If more than 50 genes/sequences are provided as input, then the associated running time can take some time. Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes. After processing you will be send an email with a link to the created phylogenetic tree.
The selection modi are exclusive: please choose either Gene selection or Species selection.
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000902', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '663', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02470' => 'bna', 'A01p16260' => 'bna', 'A02p01680' => 'bna', 'A03p16600' => 'bna', 'A03p55660' => 'bna', 'A03p64160' => 'bna', 'A03p64170' => 'bna', 'A08p31900' => 'bna', 'A09p59530' => 'bna', 'A10p08230' => 'bna', 'A10p25090' => 'bna', 'Aa31LG3G7100' => 'aar', 'Aa31LG3G7110' => 'aar', 'Aa31LG6G13160' => 'aar', 'Aa31LG7G10770' => 'aar', 'Aa31LG7G3830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2723' => 'aag', 'Actinidia08045' => 'ach', 'Actinidia08888' => 'ach', 'Actinidia18333' => 'ach', 'Actinidia19334' => 'ach', 'Actinidia25552' => 'ach', 'Actinidia26089' => 'ach', 'Actinidia30615' => 'ach', 'Actinidia30616' => 'ach', 'Actinidia33083' => 'ach', 'Actinidia35762' => 'ach', 'Ah.02g110620' => 'amhyb', 'Ah.11g046390' => 'amhyb', 'AL1G31670' => 'aly', 'AL6G23730' => 'aly', 'AL7G14740' => 'aly', 'AL7G14750' => 'aly', 'AL7G14760' => 'aly', 'AL7G28220' => 'aly', 'AL8G24940' => 'aly', 'Aqoxy3G01665' => 'aox', 'Aqoxy3G02853' => 'aox', 'Aqoxy5G01513' => 'aox', 'Aqoxy5G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8SKA4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ75LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKDA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0LJZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7REX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZP4YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWX7I5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2QKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS0L9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPCD8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q161UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC7XCF' => 'arhy', 'AT1G19100' => 'ath', 'AT4G24970' => 'ath', 'AT4G36270' => 'ath', 'AT4G36280' => 'ath', 'AT4G36290' => 'ath', 'AT5G13130' => 'ath', 'AT5G50780' => 'ath', 'ATR0582G266' => 'atr', 'ATR0661G195' => 'atr', 'ATR1152G031' => 'atr', 'Atru.chr11.2382' => 'acertr', 'Atru.chr12.2337' => 'acertr', 'Atru.chr3.744' => 'acertr', 'Atru.chr6.1870' => 'acertr', 'Atru.chr9.2515' => 'acertr', 'AUR62004120' => 'cqu', 'AUR62005667' => 'cqu', 'AUR62007634' => 'cqu', 'AUR62008186' => 'cqu', 'AUR62008187' => 'cqu', 'AUR62008188' => 'cqu', 'AUR62027954' => 'cqu', 'AUR62028766' => 'cqu', 'AUR62028767' => 'cqu', 'AUR62028768' => 'cqu', 'AUR62028886' => 'cqu', 'AUR62029563' => 'cqu', 'AUR62038832' => 'cqu', 'BcaB01g04149' => 'bca', 'BcaB03g12940' => 'bca', 'BcaB03g13090' => 'bca', 'BcaB03g14466' => 'bca', 'BcaB05g24035' => 'bca', 'BcaC01g06050' => 'bca', 'BcaC04g19148' => 'bca', 'BcaC04g20761' => 'bca', 'BcaC06g32845' => 'bca', 'BcaC07g41274' => 'bca', 'BcaC09g50827' => 'bca', 'BcaNung00741' => 'bca', 'BcaNung00742' => 'bca', 'BcaNung01859' => 'bca', 'BcaNung03985' => 'bca', 'BcaNung03989' => 'bca', 'BcaNung05661' => 'bca', 'BolC1t00257H' => 'bol', 'BolC1t01956H' => 'bol', 'BolC2t06534H' => 'bol', 'BolC3t14334H' => 'bol', 'BolC5t30451H' => 'bol', 'BolC7t45880H' => 'bol', 'BolC7t46586H' => 'bol', 'BolC8t49301H' => 'bol', 'BolC8t51837H' => 'bol', 'BolC9t56822H' => 'bol', 'BolC9t59235H' => 'bol', 'BraA01t00234Z' => 'bra', 'BraA01t01563Z' => 'bra', 'BraA02t05147Z' => 'bra', 'BraA03t10947Z' => 'bra', 'BraA03t14633Z' => 'bra', 'BraA08t35112Z' => 'bra', 'BraA09t41330Z' => 'bra', 'BraA10t44570Z' => 'bra', 'C01p02670' => 'bna', 'C01p20260' => 'bna', 'C02p05890' => 'bna', 'C03p19530' => 'bna', 'C05p17470' => 'bna', 'C07p53900' => 'bna', 'C07p61630' => 'bna', 'C08p16800' => 'bna', 'C08p42810' => 'bna', 'C09p39480' => 'bna', 'C09p63980' => 'bna', 'CAN.G1001.7' => 'can', 'CAN.G1034.55' => 'can', 'CAN.G143.7' => 'can', 'CAN.G3340.1' => 'can', 'CAN.G358.19' => 'can', 'CAN.G373.2' => 'can', 'CAN.G674.16' => 'can', 'CAN.G674.17' => 'can', 'CAN.G674.18' => 'can', 'CAN.G732.2' => 'can', 'CAN.G732.3' => 'can', 'CAN.G993.39' => 'can', 'CANSAT01G2052' => 'cansat', 'CANSAT80G0070' => 'cansat', 'CANSAT80G0483' => 'cansat', 'CANSAT80G0625' => 'cansat', 'CARHR019690' => 'chi', 'CARHR080280' => 'chi', 'CARHR152750' => 'chi', 'CARHR152760' => 'chi', 'CARHR152770' => 'chi', 'CARHR200340' => 'chi', 'CARHR232370' => 'chi', 'CARHR244670' => 'chi', 'CARHR244680' => 'chi', 'CARHR257520' => 'chi', 'Carub.0001s1872' => 'cru', 'Carub.0006s1130' => 'cru', 'Carub.0007s0396' => 'cru', 'Carub.0007s0397' => 'cru', 'Carub.0007s1608' => 'cru', 'Carub.0008s1068' => 'cru', 'Carub.0008s1077' => 'cru', 'Ca_16158_v3' => 'car', 'Ca_17571_v3' => 'car', 'Ca_21936_v3' => 'car', 'Ca_22350_v3' => 'car', 'CBR_g22445' => 'cbr', 'CBR_g26290' => 'cbr', 'Cc04_g09610' => 'ccan', 'Cc04_g12280' => 'ccan', 'Cc07_g10230' => 'ccan', 'CDE02G0093' => 'cde', 'CDE02G0701' => 'cde', 'CDE04G1050' => 'cde', 'CDE05G1833' => 'cde', 'CDE05G3058' => 'cde', 'CDE05G3380' => 'cde', 'CDE06G0536' => 'cde', 'Cfa006923' => 'cfa', 'Cfa009402' => 'cfa', 'Cfa018751' => 'cfa', 'Cfa019164' => 'cfa', 'Cfa022935' => 'cfa', 'Ciclev10019081m.g' => 'ccl', 'Ciclev10025076m.g' => 'ccl', 'Ciclev10030712m.g' => 'ccl', 'Ciclev10033760m.g' => 'ccl', 'CiPaw.05G105600' => 'cil', 'CiPaw.08G136700' => 'cil', 'CiPaw.11G003900' => 'cil', 'CiPaw.11G023700' => 'cil', 'CiPaw.12G003700' => 'cil', 'ClCG06G017100' => 'cla', 'ClCG06G018110' => 'cla', 'ClCG07G008800' => 'cla', 'ClCG07G015330' => 'cla', 'COL.COLO4_13698' => 'col', 'COL.COLO4_16659' => 'col', 'COL.COLO4_21986' => 'col', 'COL.COLO4_24049' => 'col', 'COL.COLO4_29061' => 'col', 'COL.COLO4_29075' => 'col', 'COL.COLO4_30094' => 'col', 'Cpa.g.c33689' => 'cpa', 'Cpa.g.sc108.39' => 'cpa', 'Cpa.g.sc108.41' => 'cpa', 'Cpa.g.sc1163.1' => 'cpa', 'Cpa.g.sc4.155' => 'cpa', 'Cpa.g.sc6.194' => 'cpa', 'CsaV3_1G000340' => 'csa', 'CsaV3_1G001400' => 'csa', 'CsaV3_4G002220' => 'csa', 'CsaV3_4G005370' => 'csa', 'CSS0007487' => 'camsi', 'CSS0008066' => 'camsi', 'CSS0009120' => 'camsi', 'CSS0015512' => 'camsi', 'CSS0022409' => 'camsi', 'CSS0025358' => 'camsi', 'CSS0044547' => 'camsi', 'DCAR_013057' => 'dca', 'DCAR_015058' => 'dca', 'DCAR_016027' => 'dca', 'DCAR_017327' => 'dca', 'DCAR_020743' => 'dca', 'DCAR_026157' => 'dca', 'DCAR_032339' => 'dca', 'DCAR_032340' => 'dca', 'Dinv11200' => 'din', 'Dinv11201' => 'din', 'Dinv20631' => 'din', 'Dinv23182' => 'din', 'Dinv33466' => 'din', 'Dinv33583' => 'din', 'Dinv38565' => 'din', 'Duzib068G0200' => 'dzi', 'Duzib147G0132' => 'dzi', 'Duzib147G0635' => 'dzi', 'Duzib205G1670' => 'dzi', 'Duzib251G0606' => 'dzi', 'ECA232G3336' => 'eca', 'ECA232G3763' => 'eca', 'ECA232G4845' => 'eca', 'ECA234G1607' => 'eca', 'ECA246G0932' => 'eca', 'ECA247G0781' => 'eca', 'ECA247G1932' => 'eca', 'ECA247G2079' => 'eca', 'ECA247G3338' => 'eca', 'ECA247G4115' => 'eca', 'EL10Ac3g06552' => 'bvu', 'EL10Ac5g10721' => 'bvu', 'EL10Ac5g10722' => 'bvu', 'EL10Ac5g10723' => 'bvu', 'EL10Ac5g11361' => 'bvu', 'EL10Ac6g13553' => 'bvu', 'EL10As8g23872' => 'bvu', 'Eucgr.B00250' => 'egr', 'Eucgr.B00251' => 'egr', 'Eucgr.B03533' => 'egr', 'Eucgr.I02381' => 'egr', 'Eucgr.K02700' => 'egr', 'FAN02G0174' => 'fan', 'FAN02G3146' => 'fan', 'FAN04G1672' => 'fan', 'FAN04G2273' => 'fan', 'FAN05G2791' => 'fan', 'FAN05G4035' => 'fan', 'FAN07G0834' => 'fan', 'FAN08G1198' => 'fan', 'FAN09G4182' => 'fan', 'FAN12G0496' => 'fan', 'FAN13G1027' => 'fan', 'FAN13G2951' => 'fan', 'FAN14G0705' => 'fan', 'FAN14G0720' => 'fan', 'FAN17G0201' => 'fan', 'FAN17G2665' => 'fan', 'FAN18G1456' => 'fan', 'FAN18G1525' => 'fan', 'FAN18G3500' => 'fan', 'FAN28G2670' => 'fan', 'FvH4_1g12391' => 'fve', 'FvH4_4g23220' => 'fve', 'FvH4_5g08810' => 'fve', 'FvH4_5g28960' => 'fve', 'FvH4_6g42820' => 'fve', 'FvH4_6g51110' => 'fve', 'Glyma.02G051802' => 'gma', 'Glyma.04G185300' => 'gma', 'Glyma.05G202900' => 'gma', 'Glyma.08G010300' => 'gma', 'Glyma.16G131900' => 'gma', 'Glyma.17G087900' => 'gma', 'Gohir.A07G048600' => 'ghi', 'Gohir.A11G179000' => 'ghi', 'Gohir.A12G140900' => 'ghi', 'Gohir.A12G140950' => 'ghi', 'Gohir.A12G191700' => 'ghi', 'Gohir.A13G086300' => 'ghi', 'Gohir.D07G052900' => 'ghi', 'Gohir.D11G186600' => 'ghi', 'Gohir.D12G145575' => 'ghi', 'Gohir.D12G145650' => 'ghi', 'Gohir.D12G145725' => 'ghi', 'Gohir.D12G194050' => 'ghi', 'Gohir.D13G091800' => 'ghi', 'Gorai.001G055900' => 'gra', 'Gorai.007G198400' => 'gra', 'Gorai.008G157000' => 'gra', 'Gorai.008G157100' => 'gra', 'Gorai.008G208700' => 'gra', 'Gorai.010G138700' => 'gra', 'GSVIVG01000977001' => 'vvi', 'GSVIVG01007708001' => 'vvi', 'GSVIVG01008587001' => 'vvi', 'GSVIVG01018849001' => 'vvi', 'GSVIVG01032432001' => 'vvi', 'HanXRQChr02g0034131' => 'han', 'HanXRQChr02g0035981' => 'han', 'HanXRQChr02g0035991' => 'han', 'HanXRQChr05g0155611' => 'han', 'HanXRQChr05g0155621' => 'han', 'HanXRQChr08g0236501' => 'han', 'HanXRQChr09g0261321' => 'han', 'HanXRQChr09g0272081' => 'han', 'HanXRQChr10g0310741' => 'han', 'HanXRQChr11g0325591' => 'han', 'HanXRQChr12g0385691' => 'han', 'HanXRQChr13g0387801' => 'han', 'HanXRQChr15g0463011' => 'han', 'Haze_03826' => 'cav', 'Haze_03827' => 'cav', 'Haze_07183' => 'cav', 'Haze_07537' => 'cav', 'Haze_07539' => 'cav', 'Haze_12461' => 'cav', 'Haze_16115' => 'cav', 'Haze_16808' => 'cav', 'Haze_18531' => 'cav', 'Hma1.2p1_0046F.1_g026700' => 'hma', 'Hma1.2p1_0046F.1_g026710' => 'hma', 'Hma1.2p1_0168F.1_g074340' => 'hma', 'Hma1.2p1_0266F.1_g107030' => 'hma', 'Hma1.2p1_0266F.1_g107060' => 'hma', 'Hma1.2p1_0275F.1_g110510' => 'hma', 'Hma1.2p1_0592F.1_g185490' => 'hma', 'Hma1.2p1_0592F.1_g185500' => 'hma', 'Hma1.2p1_0592F.1_g185510' => 'hma', 'Hma1.2p1_0592F.1_g185520' => 'hma', 'Hma1.2p1_0592F.1_g185530' => 'hma', 'Hma1.2p1_0818F.1_g223450' => 'hma', 'HPP92_009708' => 'vpl', 'HPP92_009793' => 'vpl', 'HPP92_009796' => 'vpl', 'HPP92_009797' => 'vpl', 'HPP92_014940' => 'vpl', 'HPP92_014988' => 'vpl', 'Hund02463' => 'sun', 'Hund02760' => 'sun', 'Hund05071' => 'sun', 'Hund10108' => 'sun', 'Hund11204' => 'sun', 'Hund14016' => 'sun', 'Hund16464' => 'sun', 'Lalb_Chr09g0333391' => 'lal', 'Lalb_Chr11g0070461' => 'lal', 'Lalb_Chr12g0201671' => 'lal', 'Lalb_Chr13g0297161' => 'lal', 'Lj1g0002823' => 'lja', 'Lj3C1074T6' => 'lonja', 'Lj4A212T28' => 'lonja', 'Lj4g0005516' => 'lja', 'Lj4g0013705' => 'lja', 'Lj4g0027865' => 'lja', 'Lj5C92G16' => 'lonja', 'Lj5C92T12' => 'lonja', 'Lj7C596T3' => 'lonja', 'Lj9A446G59' => 'lonja', 'Lj9A482G21' => 'lonja', 'Lsat_1_v5_gn_1_28261' => 'lsa', 'Lsat_1_v5_gn_1_28281' => 'lsa', 'Lsat_1_v5_gn_1_32721' => 'lsa', 'Lsat_1_v5_gn_4_151760' => 'lsa', 'Lsat_1_v5_gn_4_2120' => 'lsa', 'Lsat_1_v5_gn_4_75761' => 'lsa', 'Lsat_1_v5_gn_5_10920' => 'lsa', 'Manes.02G099900' => 'mes', 'Manes.11G096200' => 'mes', 'Manes.12G007200' => 'mes', 'Manes.14G048300' => 'mes', 'Manes.17G114700' => 'mes', 'Mapoly0002s0070' => 'mpo', 'Mapoly0029s0099' => 'mpo', 'MBI07_g24742_MAGBIO' => 'mbi', 'MBI10_g27988_MAGBIO' => 'mbi', 'MBI11_g13057_MAGBIO' => 'mbi', 'MD02G1137200' => 'mdo', 'MD06G1137200' => 'mdo', 'MD07G1122300' => 'mdo', 'MD09G1078200' => 'mdo', 'MD13G1123700' => 'mdo', 'MD14G1151900' => 'mdo', 'MD17G1030900' => 'mdo', 'MD17G1068200' => 'mdo', 'MD17G1068600' => 'mdo', 'Medtr3g077540' => 'mtr', 'Medtr4g105530' => 'mtr', 'Medtr8g076580' => 'mtr', 'Medtr8g076590' => 'mtr', 'Medtr8g096410' => 'mtr', 'MELO3C016411.2' => 'cme', 'MELO3C017780.2' => 'cme', 'MELO3C022560.2' => 'cme', 'MELO3C026187.2' => 'cme', 'MELO3C026286.2' => 'cme', 'MELO3C032854.2' => 'cme', 'Migut.H02495' => 'egut', 'Migut.I00561' => 'egut', 'Migut.K01015' => 'egut', 'Migut.K01016' => 'egut', 'Migut.L00743' => 'egut', 'Migut.L00744' => 'egut', 'Migut.L00746' => 'egut', 'Migut.L00798' => 'egut', 'Migut.L00799' => 'egut', 'Migut.N02096' => 'egut', 'MSTRG.11259' => 'ama', 'MSTRG.23142' => 'ama', 'MSTRG.2499' => 'ama', 'Nitab4.5_0000003g0730' => 'nta', 'Nitab4.5_0000137g0020' => 'nta', 'Nitab4.5_0000721g0210' => 'nta', 'Nitab4.5_0000723g0050' => 'nta', 'Nitab4.5_0000913g0070' => 'nta', 'Nitab4.5_0001332g0040' => 'nta', 'Nitab4.5_0001771g0050' => 'nta', 'Nitab4.5_0001918g0050' => 'nta', 'Nitab4.5_0002686g0030' => 'nta', 'Nitab4.5_0003156g0020' => 'nta', 'Nitab4.5_0003383g0040' => 'nta', 'Nitab4.5_0003918g0010' => 'nta', 'Nitab4.5_0006760g0010' => 'nta', 'Nn1g05981' => 'nnu', 'Nn1g06288' => 'nnu', 'Nn3g16371' => 'nnu', 'Nn3g16786' => 'nnu', 'Nn4g22232' => 'nnu', 'Oeu005144.1' => 'oeu', 'Oeu005145.1' => 'oeu', 'Oeu011348.1' => 'oeu', 'Oeu016415.1' => 'oeu', 'Oeu023501.1' => 'oeu', 'Oeu044473.1' => 'oeu', 'Oeu048892.2' => 'oeu', 'Os01g0549200' => 'osa', 'Os02g0469300' => 'osa', 'Os04g0311100' => 'osa', 'Os06g0474900' => 'osa', 'Os10g0181700' => 'osa', 'Os11g0454800' => 'osa', 'Peaxi162Scf00037g00714' => 'pax', 'Peaxi162Scf00084g01217' => 'pax', 'Peaxi162Scf00257g00217' => 'pax', 'Peaxi162Scf00516g00215' => 'pax', 'Peaxi162Scf00689g00123' => 'pax', 'PGR044G2719' => 'pgr', 'PGR083G1360' => 'pgr', 'PGR102G2849' => 'pgr', 'PGR119G2534' => 'pgr', 'PGSC0003DMG400003538' => 'stu', 'PGSC0003DMG400028138' => 'stu', 'PGSC0003DMG400031732' => 'stu', 'PGSC0003DMG400038165' => 'stu', 'Phvul.002G284600' => 'pvu', 'Phvul.003G258200' => 'pvu', 'Phvul.009G176500' => 'pvu', 'Potri.003G167201' => 'ptr', 'Potri.005G118400' => 'ptr', 'Potri.012G089000' => 'ptr', 'Potri.012G102800' => 'ptr', 'Potri.015G079400' => 'ptr', 'Potri.015G100900' => 'ptr', 'Pp3c14_9810' => 'ppa', 'Pp3c15_10450' => 'ppa', 'Pp3c20_19150' => 'ppa', 'Pp3c23_12740' => 'ppa', 'Pp3c23_6310' => 'ppa', 'Pp3c24_3720' => 'ppa', 'Pp3c27_2580' => 'ppa', 'Pp3c9_8990' => 'ppa', 'PRCOL_00002854' => 'pco', 'Prupe.1G221200' => 'ppe', 'Prupe.3G289000' => 'ppe', 'Prupe.5G147000' => 'ppe', 'Prupe.6G157300' => 'ppe', 'Prupe.7G163400' => 'ppe', 'Psat0s2177g0040' => 'psa', 'Psat3g174760' => 'psa', 'Psat3g192160' => 'psa', 'Psat4g058520' => 'psa', 'Psat4g096840' => 'psa', 'Psat7g037320' => 'psa', 'PSO017G1274' => 'pso', 'PSO017G5166' => 'pso', 'PSO063G4558' => 'pso', 'PSO170G4458' => 'pso', 'PSO170G5005' => 'pso', 'PSO210G6156' => 'pso', 'PSO210G6635' => 'pso', 'PSO210G7397' => 'pso', 'PSO210G7700' => 'pso', 'PSO455G0035' => 'pso', 'PSO455G0180' => 'pso', 'PSO478G4515' => 'pso', 'PSO832G1305' => 'pso', 'PSO832G3489' => 'pso', 'QL02p075247' => 'qlo', 'QL03p051148' => 'qlo', 'QL05p010313' => 'qlo', 'QL06p034627' => 'qlo', 'QL10p001889' => 'qlo', 'QL10p010846' => 'qlo', 'RcHm_v2.0_Chr1g0350621' => 'rch', 'RcHm_v2.0_Chr1g0350641' => 'rch', 'RcHm_v2.0_Chr2g0092891' => 'rch', 'RcHm_v2.0_Chr2g0100251' => 'rch', 'RcHm_v2.0_Chr2g0158661' => 'rch', 'RcHm_v2.0_Chr2g0172741' => 'rch', 'RcHm_v2.0_Chr4g0429571' => 'rch', 'RcHm_v2.0_Chr5g0042471' => 'rch', 'RcHm_v2.0_Chr7g0189451' => 'rch', 'Rhsim08G0052000' => 'rsi', 'Rhsim08G0174400' => 'rsi', 'Rhsim08G0193200' => 'rsi', 'Rhsim10G0214800' => 'rsi', 'Rhsim10G0214900' => 'rsi', 'Rhsim10G0215000' => 'rsi', 'Rhsim12G0022900' => 'rsi', 'Rhsim12G0177500' => 'rsi', 'Rhsim12G0177700' => 'rsi', 'Sabra03G0122600' => 'sbr', 'Sabra05G0097400' => 'sbr', 'Sabra12G0064100' => 'sbr', 'Sabra15G0121300' => 'sbr', 'SalBow2G0642' => 'sbo', 'SalBow5G2667' => 'sbo', 'SalBow5G4873' => 'sbo', 'SalBow8G2395' => 'sbo', 'Sc03g0003290' => 'sci', 'Sc10g0010130' => 'sci', 'Sc22g0003650' => 'sci', 'Sed0001603' => 'sed', 'Sed0004259' => 'sed', 'Sed0006789' => 'sed', 'Sed0011838' => 'sed', 'Sed0012964' => 'sed', 'Sed0016383' => 'sed', 'Sed0019010' => 'sed', 'Sed0020188' => 'sed', 'SEGI_04702' => 'sgi', 'SEGI_17231' => 'sgi', 'SEGI_18877' => 'sgi', 'SEGI_25196' => 'sgi', 'SEGI_25515' => 'sgi', 'SEGI_28445' => 'sgi', 'SEGI_37452' => 'sgi', 'SGA_v2.0_scaffold188G40336' => 'sas', 'SGA_v2.0_scaffold228G43247' => 'sas', 'SGA_v2.0_scaffold280G46853' => 'sas', 'SGA_v2.0_scaffold34G13808' => 'sas', 'SGA_v2.0_scaffold40G15576' => 'sas', 'SGA_v2.0_scaffold611G53188' => 'sas', 'SGA_v2.0_scaffold78G25461' => 'sas', 'SGA_v2.0_scaffold90G27888' => 'sas', 'SHI08601' => 'shi', 'SHI08606' => 'shi', 'SHI17117' => 'shi', 'SHI17119' => 'shi', 'SMO118G0201' => 'smo', 'SMO169G0247' => 'smo', 'SMO176G0006' => 'smo', 'SMO176G0015' => 'smo', 'SMO202G0006' => 'smo', 'SMO240G0050' => 'smo', 'SMO286G0009' => 'smo', 'SMO338G0033' => 'smo', 'SMO356G0533' => 'smo', 'SMO364G0382' => 'smo', 'SMO367G0166' => 'smo', 'SMO367G1098' => 'smo', 'Solyc01g009920.3' => 'sly', 'Solyc01g099300.3' => 'sly', 'Solyc02g084700.3' => 'sly', 'Solyc03g097520.3' => 'sly', 'Solyc06g071580.3' => 'sly', 'Solyc10g081760.3' => 'sly', 'Sopen01g005480' => 'spe', 'Sopen01g042850' => 'spe', 'Sopen02g029370' => 'spe', 'Sopen03g028280' => 'spe', 'Sopen06g027870' => 'spe', 'Sopen10g032270' => 'spe', 'Sp5g18180' => 'spa', 'Sp6g12880' => 'spa', 'Sp6g30850' => 'spa', 'Sp7g22960' => 'spa', 'Sp7g34010' => 'spa', 'SpUn1326_0010' => 'spa', 'TAR371G0242' => 'tar', 'TAR622G0638' => 'tar', 'TAR628G1548' => 'tar', 'TAR629G1079' => 'tar', 'TAR629G3413' => 'tar', 'THA.LOC104804249' => 'tha', 'THA.LOC104808315' => 'tha', 'THA.LOC104809238' => 'tha', 'THA.LOC104825484' => 'tha', 'Thecc.01G025500' => 'tca', 'Thecc.03G015800' => 'tca', 'Thecc.03G018000' => 'tca', 'Thecc.03G134800' => 'tca', 'Thecc.04G014700' => 'tca', 'Thhalv10006991m.g' => 'esa', 'Thhalv10012707m.g' => 'esa', 'Thhalv10015739m.g' => 'esa', 'Thhalv10024553m.g' => 'esa', 'Thhalv10024673m.g' => 'esa', 'Thhalv10029187m.g' => 'esa', 'TPR.G12971' => 'tpr', 'TPR.G29396' => 'tpr', 'TPR.G33376' => 'tpr', 'TPR.G35508' => 'tpr', 'TPR.G35516' => 'tpr', 'TPR.G37317' => 'tpr', 'TPR.G37389' => 'tpr', 'TPR.G37523' => 'tpr', 'TPR.G559' => 'tpr', 'TWI14G0070' => 'twi', 'TWI14G0729' => 'twi', 'TWI18G0596' => 'twi', 'TWI39G0780' => 'twi', 'TWI39G0850' => 'twi', 'TWI73G1052' => 'twi', 'unitig_52.g17485' => 'ugi', 'unitig_61.g26355' => 'ugi', 'vmacro01040' => 'vma', 'vmacro16731' => 'vma', 'vmacro18270' => 'vma', 'vmacro19142' => 'vma', 'vmacro19407' => 'vma', 'vmacro19408' => 'vma', 'vmacro21899' => 'vma', 'vmacro21900' => 'vma', 'vmacro21901' => 'vma', 'VMungo0251G0490' => 'vmu', 'VMungo0251G1748' => 'vmu', 'VMungo1309G0421' => 'vmu', 'Zm00001eb086500' => 'zma', 'Zm00001eb150680' => 'zma', 'Zm00001eb162330' => 'zma', 'Zm00001eb203130' => 'zma', 'Zm00001eb369480' => 'zma', 'Zm00001eb382340' => 'zma', 'Zm00001eb416360' => 'zma' ), 'gf_id' => 'HOM05D000902', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000902' ), 'data_identifier' => 'HOM05D000902', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000902', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '663', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02470' => 'bna', 'A01p16260' => 'bna', 'A02p01680' => 'bna', 'A03p16600' => 'bna', 'A03p55660' => 'bna', 'A03p64160' => 'bna', 'A03p64170' => 'bna', 'A08p31900' => 'bna', 'A09p59530' => 'bna', 'A10p08230' => 'bna', 'A10p25090' => 'bna', 'Aa31LG3G7100' => 'aar', 'Aa31LG3G7110' => 'aar', 'Aa31LG6G13160' => 'aar', 'Aa31LG7G10770' => 'aar', 'Aa31LG7G3830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2723' => 'aag', 'Actinidia08045' => 'ach', 'Actinidia08888' => 'ach', 'Actinidia18333' => 'ach', 'Actinidia19334' => 'ach', 'Actinidia25552' => 'ach', 'Actinidia26089' => 'ach', 'Actinidia30615' => 'ach', 'Actinidia30616' => 'ach', 'Actinidia33083' => 'ach', 'Actinidia35762' => 'ach', 'Ah.02g110620' => 'amhyb', 'Ah.11g046390' => 'amhyb', 'AL1G31670' => 'aly', 'AL6G23730' => 'aly', 'AL7G14740' => 'aly', 'AL7G14750' => 'aly', 'AL7G14760' => 'aly', 'AL7G28220' => 'aly', 'AL8G24940' => 'aly', 'Aqoxy3G01665' => 'aox', 'Aqoxy3G02853' => 'aox', 'Aqoxy5G01513' => 'aox', 'Aqoxy5G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8SKA4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ75LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKDA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0LJZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7REX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZP4YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWX7I5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2QKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS0L9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPCD8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q161UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC7XCF' => 'arhy', 'AT1G19100' => 'ath', 'AT4G24970' => 'ath', 'AT4G36270' => 'ath', 'AT4G36280' => 'ath', 'AT4G36290' => 'ath', 'AT5G13130' => 'ath', 'AT5G50780' => 'ath', 'ATR0582G266' => 'atr', 'ATR0661G195' => 'atr', 'ATR1152G031' => 'atr', 'Atru.chr11.2382' => 'acertr', 'Atru.chr12.2337' => 'acertr', 'Atru.chr3.744' => 'acertr', 'Atru.chr6.1870' => 'acertr', 'Atru.chr9.2515' => 'acertr', 'AUR62004120' => 'cqu', 'AUR62005667' => 'cqu', 'AUR62007634' => 'cqu', 'AUR62008186' => 'cqu', 'AUR62008187' => 'cqu', 'AUR62008188' => 'cqu', 'AUR62027954' => 'cqu', 'AUR62028766' => 'cqu', 'AUR62028767' => 'cqu', 'AUR62028768' => 'cqu', 'AUR62028886' => 'cqu', 'AUR62029563' => 'cqu', 'AUR62038832' => 'cqu', 'BcaB01g04149' => 'bca', 'BcaB03g12940' => 'bca', 'BcaB03g13090' => 'bca', 'BcaB03g14466' => 'bca', 'BcaB05g24035' => 'bca', 'BcaC01g06050' => 'bca', 'BcaC04g19148' => 'bca', 'BcaC04g20761' => 'bca', 'BcaC06g32845' => 'bca', 'BcaC07g41274' => 'bca', 'BcaC09g50827' => 'bca', 'BcaNung00741' => 'bca', 'BcaNung00742' => 'bca', 'BcaNung01859' => 'bca', 'BcaNung03985' => 'bca', 'BcaNung03989' => 'bca', 'BcaNung05661' => 'bca', 'BolC1t00257H' => 'bol', 'BolC1t01956H' => 'bol', 'BolC2t06534H' => 'bol', 'BolC3t14334H' => 'bol', 'BolC5t30451H' => 'bol', 'BolC7t45880H' => 'bol', 'BolC7t46586H' => 'bol', 'BolC8t49301H' => 'bol', 'BolC8t51837H' => 'bol', 'BolC9t56822H' => 'bol', 'BolC9t59235H' => 'bol', 'BraA01t00234Z' => 'bra', 'BraA01t01563Z' => 'bra', 'BraA02t05147Z' => 'bra', 'BraA03t10947Z' => 'bra', 'BraA03t14633Z' => 'bra', 'BraA08t35112Z' => 'bra', 'BraA09t41330Z' => 'bra', 'BraA10t44570Z' => 'bra', 'C01p02670' => 'bna', 'C01p20260' => 'bna', 'C02p05890' => 'bna', 'C03p19530' => 'bna', 'C05p17470' => 'bna', 'C07p53900' => 'bna', 'C07p61630' => 'bna', 'C08p16800' => 'bna', 'C08p42810' => 'bna', 'C09p39480' => 'bna', 'C09p63980' => 'bna', 'CAN.G1001.7' => 'can', 'CAN.G1034.55' => 'can', 'CAN.G143.7' => 'can', 'CAN.G3340.1' => 'can', 'CAN.G358.19' => 'can', 'CAN.G373.2' => 'can', 'CAN.G674.16' => 'can', 'CAN.G674.17' => 'can', 'CAN.G674.18' => 'can', 'CAN.G732.2' => 'can', 'CAN.G732.3' => 'can', 'CAN.G993.39' => 'can', 'CANSAT01G2052' => 'cansat', 'CANSAT80G0070' => 'cansat', 'CANSAT80G0483' => 'cansat', 'CANSAT80G0625' => 'cansat', 'CARHR019690' => 'chi', 'CARHR080280' => 'chi', 'CARHR152750' => 'chi', 'CARHR152760' => 'chi', 'CARHR152770' => 'chi', 'CARHR200340' => 'chi', 'CARHR232370' => 'chi', 'CARHR244670' => 'chi', 'CARHR244680' => 'chi', 'CARHR257520' => 'chi', 'Carub.0001s1872' => 'cru', 'Carub.0006s1130' => 'cru', 'Carub.0007s0396' => 'cru', 'Carub.0007s0397' => 'cru', 'Carub.0007s1608' => 'cru', 'Carub.0008s1068' => 'cru', 'Carub.0008s1077' => 'cru', 'Ca_16158_v3' => 'car', 'Ca_17571_v3' => 'car', 'Ca_21936_v3' => 'car', 'Ca_22350_v3' => 'car', 'CBR_g22445' => 'cbr', 'CBR_g26290' => 'cbr', 'Cc04_g09610' => 'ccan', 'Cc04_g12280' => 'ccan', 'Cc07_g10230' => 'ccan', 'CDE02G0093' => 'cde', 'CDE02G0701' => 'cde', 'CDE04G1050' => 'cde', 'CDE05G1833' => 'cde', 'CDE05G3058' => 'cde', 'CDE05G3380' => 'cde', 'CDE06G0536' => 'cde', 'Cfa006923' => 'cfa', 'Cfa009402' => 'cfa', 'Cfa018751' => 'cfa', 'Cfa019164' => 'cfa', 'Cfa022935' => 'cfa', 'Ciclev10019081m.g' => 'ccl', 'Ciclev10025076m.g' => 'ccl', 'Ciclev10030712m.g' => 'ccl', 'Ciclev10033760m.g' => 'ccl', 'CiPaw.05G105600' => 'cil', 'CiPaw.08G136700' => 'cil', 'CiPaw.11G003900' => 'cil', 'CiPaw.11G023700' => 'cil', 'CiPaw.12G003700' => 'cil', 'ClCG06G017100' => 'cla', 'ClCG06G018110' => 'cla', 'ClCG07G008800' => 'cla', 'ClCG07G015330' => 'cla', 'COL.COLO4_13698' => 'col', 'COL.COLO4_16659' => 'col', 'COL.COLO4_21986' => 'col', 'COL.COLO4_24049' => 'col', 'COL.COLO4_29061' => 'col', 'COL.COLO4_29075' => 'col', 'COL.COLO4_30094' => 'col', 'Cpa.g.c33689' => 'cpa', 'Cpa.g.sc108.39' => 'cpa', 'Cpa.g.sc108.41' => 'cpa', 'Cpa.g.sc1163.1' => 'cpa', 'Cpa.g.sc4.155' => 'cpa', 'Cpa.g.sc6.194' => 'cpa', 'CsaV3_1G000340' => 'csa', 'CsaV3_1G001400' => 'csa', 'CsaV3_4G002220' => 'csa', 'CsaV3_4G005370' => 'csa', 'CSS0007487' => 'camsi', 'CSS0008066' => 'camsi', 'CSS0009120' => 'camsi', 'CSS0015512' => 'camsi', 'CSS0022409' => 'camsi', 'CSS0025358' => 'camsi', 'CSS0044547' => 'camsi', 'DCAR_013057' => 'dca', 'DCAR_015058' => 'dca', 'DCAR_016027' => 'dca', 'DCAR_017327' => 'dca', 'DCAR_020743' => 'dca', 'DCAR_026157' => 'dca', 'DCAR_032339' => 'dca', 'DCAR_032340' => 'dca', 'Dinv11200' => 'din', 'Dinv11201' => 'din', 'Dinv20631' => 'din', 'Dinv23182' => 'din', 'Dinv33466' => 'din', 'Dinv33583' => 'din', 'Dinv38565' => 'din', 'Duzib068G0200' => 'dzi', 'Duzib147G0132' => 'dzi', 'Duzib147G0635' => 'dzi', 'Duzib205G1670' => 'dzi', 'Duzib251G0606' => 'dzi', 'ECA232G3336' => 'eca', 'ECA232G3763' => 'eca', 'ECA232G4845' => 'eca', 'ECA234G1607' => 'eca', 'ECA246G0932' => 'eca', 'ECA247G0781' => 'eca', 'ECA247G1932' => 'eca', 'ECA247G2079' => 'eca', 'ECA247G3338' => 'eca', 'ECA247G4115' => 'eca', 'EL10Ac3g06552' => 'bvu', 'EL10Ac5g10721' => 'bvu', 'EL10Ac5g10722' => 'bvu', 'EL10Ac5g10723' => 'bvu', 'EL10Ac5g11361' => 'bvu', 'EL10Ac6g13553' => 'bvu', 'EL10As8g23872' => 'bvu', 'Eucgr.B00250' => 'egr', 'Eucgr.B00251' => 'egr', 'Eucgr.B03533' => 'egr', 'Eucgr.I02381' => 'egr', 'Eucgr.K02700' => 'egr', 'FAN02G0174' => 'fan', 'FAN02G3146' => 'fan', 'FAN04G1672' => 'fan', 'FAN04G2273' => 'fan', 'FAN05G2791' => 'fan', 'FAN05G4035' => 'fan', 'FAN07G0834' => 'fan', 'FAN08G1198' => 'fan', 'FAN09G4182' => 'fan', 'FAN12G0496' => 'fan', 'FAN13G1027' => 'fan', 'FAN13G2951' => 'fan', 'FAN14G0705' => 'fan', 'FAN14G0720' => 'fan', 'FAN17G0201' => 'fan', 'FAN17G2665' => 'fan', 'FAN18G1456' => 'fan', 'FAN18G1525' => 'fan', 'FAN18G3500' => 'fan', 'FAN28G2670' => 'fan', 'FvH4_1g12391' => 'fve', 'FvH4_4g23220' => 'fve', 'FvH4_5g08810' => 'fve', 'FvH4_5g28960' => 'fve', 'FvH4_6g42820' => 'fve', 'FvH4_6g51110' => 'fve', 'Glyma.02G051802' => 'gma', 'Glyma.04G185300' => 'gma', 'Glyma.05G202900' => 'gma', 'Glyma.08G010300' => 'gma', 'Glyma.16G131900' => 'gma', 'Glyma.17G087900' => 'gma', 'Gohir.A07G048600' => 'ghi', 'Gohir.A11G179000' => 'ghi', 'Gohir.A12G140900' => 'ghi', 'Gohir.A12G140950' => 'ghi', 'Gohir.A12G191700' => 'ghi', 'Gohir.A13G086300' => 'ghi', 'Gohir.D07G052900' => 'ghi', 'Gohir.D11G186600' => 'ghi', 'Gohir.D12G145575' => 'ghi', 'Gohir.D12G145650' => 'ghi', 'Gohir.D12G145725' => 'ghi', 'Gohir.D12G194050' => 'ghi', 'Gohir.D13G091800' => 'ghi', 'Gorai.001G055900' => 'gra', 'Gorai.007G198400' => 'gra', 'Gorai.008G157000' => 'gra', 'Gorai.008G157100' => 'gra', 'Gorai.008G208700' => 'gra', 'Gorai.010G138700' => 'gra', 'GSVIVG01000977001' => 'vvi', 'GSVIVG01007708001' => 'vvi', 'GSVIVG01008587001' => 'vvi', 'GSVIVG01018849001' => 'vvi', 'GSVIVG01032432001' => 'vvi', 'HanXRQChr02g0034131' => 'han', 'HanXRQChr02g0035981' => 'han', 'HanXRQChr02g0035991' => 'han', 'HanXRQChr05g0155611' => 'han', 'HanXRQChr05g0155621' => 'han', 'HanXRQChr08g0236501' => 'han', 'HanXRQChr09g0261321' => 'han', 'HanXRQChr09g0272081' => 'han', 'HanXRQChr10g0310741' => 'han', 'HanXRQChr11g0325591' => 'han', 'HanXRQChr12g0385691' => 'han', 'HanXRQChr13g0387801' => 'han', 'HanXRQChr15g0463011' => 'han', 'Haze_03826' => 'cav', 'Haze_03827' => 'cav', 'Haze_07183' => 'cav', 'Haze_07537' => 'cav', 'Haze_07539' => 'cav', 'Haze_12461' => 'cav', 'Haze_16115' => 'cav', 'Haze_16808' => 'cav', 'Haze_18531' => 'cav', 'Hma1.2p1_0046F.1_g026700' => 'hma', 'Hma1.2p1_0046F.1_g026710' => 'hma', 'Hma1.2p1_0168F.1_g074340' => 'hma', 'Hma1.2p1_0266F.1_g107030' => 'hma', 'Hma1.2p1_0266F.1_g107060' => 'hma', 'Hma1.2p1_0275F.1_g110510' => 'hma', 'Hma1.2p1_0592F.1_g185490' => 'hma', 'Hma1.2p1_0592F.1_g185500' => 'hma', 'Hma1.2p1_0592F.1_g185510' => 'hma', 'Hma1.2p1_0592F.1_g185520' => 'hma', 'Hma1.2p1_0592F.1_g185530' => 'hma', 'Hma1.2p1_0818F.1_g223450' => 'hma', 'HPP92_009708' => 'vpl', 'HPP92_009793' => 'vpl', 'HPP92_009796' => 'vpl', 'HPP92_009797' => 'vpl', 'HPP92_014940' => 'vpl', 'HPP92_014988' => 'vpl', 'Hund02463' => 'sun', 'Hund02760' => 'sun', 'Hund05071' => 'sun', 'Hund10108' => 'sun', 'Hund11204' => 'sun', 'Hund14016' => 'sun', 'Hund16464' => 'sun', 'Lalb_Chr09g0333391' => 'lal', 'Lalb_Chr11g0070461' => 'lal', 'Lalb_Chr12g0201671' => 'lal', 'Lalb_Chr13g0297161' => 'lal', 'Lj1g0002823' => 'lja', 'Lj3C1074T6' => 'lonja', 'Lj4A212T28' => 'lonja', 'Lj4g0005516' => 'lja', 'Lj4g0013705' => 'lja', 'Lj4g0027865' => 'lja', 'Lj5C92G16' => 'lonja', 'Lj5C92T12' => 'lonja', 'Lj7C596T3' => 'lonja', 'Lj9A446G59' => 'lonja', 'Lj9A482G21' => 'lonja', 'Lsat_1_v5_gn_1_28261' => 'lsa', 'Lsat_1_v5_gn_1_28281' => 'lsa', 'Lsat_1_v5_gn_1_32721' => 'lsa', 'Lsat_1_v5_gn_4_151760' => 'lsa', 'Lsat_1_v5_gn_4_2120' => 'lsa', 'Lsat_1_v5_gn_4_75761' => 'lsa', 'Lsat_1_v5_gn_5_10920' => 'lsa', 'Manes.02G099900' => 'mes', 'Manes.11G096200' => 'mes', 'Manes.12G007200' => 'mes', 'Manes.14G048300' => 'mes', 'Manes.17G114700' => 'mes', 'Mapoly0002s0070' => 'mpo', 'Mapoly0029s0099' => 'mpo', 'MBI07_g24742_MAGBIO' => 'mbi', 'MBI10_g27988_MAGBIO' => 'mbi', 'MBI11_g13057_MAGBIO' => 'mbi', 'MD02G1137200' => 'mdo', 'MD06G1137200' => 'mdo', 'MD07G1122300' => 'mdo', 'MD09G1078200' => 'mdo', 'MD13G1123700' => 'mdo', 'MD14G1151900' => 'mdo', 'MD17G1030900' => 'mdo', 'MD17G1068200' => 'mdo', 'MD17G1068600' => 'mdo', 'Medtr3g077540' => 'mtr', 'Medtr4g105530' => 'mtr', 'Medtr8g076580' => 'mtr', 'Medtr8g076590' => 'mtr', 'Medtr8g096410' => 'mtr', 'MELO3C016411.2' => 'cme', 'MELO3C017780.2' => 'cme', 'MELO3C022560.2' => 'cme', 'MELO3C026187.2' => 'cme', 'MELO3C026286.2' => 'cme', 'MELO3C032854.2' => 'cme', 'Migut.H02495' => 'egut', 'Migut.I00561' => 'egut', 'Migut.K01015' => 'egut', 'Migut.K01016' => 'egut', 'Migut.L00743' => 'egut', 'Migut.L00744' => 'egut', 'Migut.L00746' => 'egut', 'Migut.L00798' => 'egut', 'Migut.L00799' => 'egut', 'Migut.N02096' => 'egut', 'MSTRG.11259' => 'ama', 'MSTRG.23142' => 'ama', 'MSTRG.2499' => 'ama', 'Nitab4.5_0000003g0730' => 'nta', 'Nitab4.5_0000137g0020' => 'nta', 'Nitab4.5_0000721g0210' => 'nta', 'Nitab4.5_0000723g0050' => 'nta', 'Nitab4.5_0000913g0070' => 'nta', 'Nitab4.5_0001332g0040' => 'nta', 'Nitab4.5_0001771g0050' => 'nta', 'Nitab4.5_0001918g0050' => 'nta', 'Nitab4.5_0002686g0030' => 'nta', 'Nitab4.5_0003156g0020' => 'nta', 'Nitab4.5_0003383g0040' => 'nta', 'Nitab4.5_0003918g0010' => 'nta', 'Nitab4.5_0006760g0010' => 'nta', 'Nn1g05981' => 'nnu', 'Nn1g06288' => 'nnu', 'Nn3g16371' => 'nnu', 'Nn3g16786' => 'nnu', 'Nn4g22232' => 'nnu', 'Oeu005144.1' => 'oeu', 'Oeu005145.1' => 'oeu', 'Oeu011348.1' => 'oeu', 'Oeu016415.1' => 'oeu', 'Oeu023501.1' => 'oeu', 'Oeu044473.1' => 'oeu', 'Oeu048892.2' => 'oeu', 'Os01g0549200' => 'osa', 'Os02g0469300' => 'osa', 'Os04g0311100' => 'osa', 'Os06g0474900' => 'osa', 'Os10g0181700' => 'osa', 'Os11g0454800' => 'osa', 'Peaxi162Scf00037g00714' => 'pax', 'Peaxi162Scf00084g01217' => 'pax', 'Peaxi162Scf00257g00217' => 'pax', 'Peaxi162Scf00516g00215' => 'pax', 'Peaxi162Scf00689g00123' => 'pax', 'PGR044G2719' => 'pgr', 'PGR083G1360' => 'pgr', 'PGR102G2849' => 'pgr', 'PGR119G2534' => 'pgr', 'PGSC0003DMG400003538' => 'stu', 'PGSC0003DMG400028138' => 'stu', 'PGSC0003DMG400031732' => 'stu', 'PGSC0003DMG400038165' => 'stu', 'Phvul.002G284600' => 'pvu', 'Phvul.003G258200' => 'pvu', 'Phvul.009G176500' => 'pvu', 'Potri.003G167201' => 'ptr', 'Potri.005G118400' => 'ptr', 'Potri.012G089000' => 'ptr', 'Potri.012G102800' => 'ptr', 'Potri.015G079400' => 'ptr', 'Potri.015G100900' => 'ptr', 'Pp3c14_9810' => 'ppa', 'Pp3c15_10450' => 'ppa', 'Pp3c20_19150' => 'ppa', 'Pp3c23_12740' => 'ppa', 'Pp3c23_6310' => 'ppa', 'Pp3c24_3720' => 'ppa', 'Pp3c27_2580' => 'ppa', 'Pp3c9_8990' => 'ppa', 'PRCOL_00002854' => 'pco', 'Prupe.1G221200' => 'ppe', 'Prupe.3G289000' => 'ppe', 'Prupe.5G147000' => 'ppe', 'Prupe.6G157300' => 'ppe', 'Prupe.7G163400' => 'ppe', 'Psat0s2177g0040' => 'psa', 'Psat3g174760' => 'psa', 'Psat3g192160' => 'psa', 'Psat4g058520' => 'psa', 'Psat4g096840' => 'psa', 'Psat7g037320' => 'psa', 'PSO017G1274' => 'pso', 'PSO017G5166' => 'pso', 'PSO063G4558' => 'pso', 'PSO170G4458' => 'pso', 'PSO170G5005' => 'pso', 'PSO210G6156' => 'pso', 'PSO210G6635' => 'pso', 'PSO210G7397' => 'pso', 'PSO210G7700' => 'pso', 'PSO455G0035' => 'pso', 'PSO455G0180' => 'pso', 'PSO478G4515' => 'pso', 'PSO832G1305' => 'pso', 'PSO832G3489' => 'pso', 'QL02p075247' => 'qlo', 'QL03p051148' => 'qlo', 'QL05p010313' => 'qlo', 'QL06p034627' => 'qlo', 'QL10p001889' => 'qlo', 'QL10p010846' => 'qlo', 'RcHm_v2.0_Chr1g0350621' => 'rch', 'RcHm_v2.0_Chr1g0350641' => 'rch', 'RcHm_v2.0_Chr2g0092891' => 'rch', 'RcHm_v2.0_Chr2g0100251' => 'rch', 'RcHm_v2.0_Chr2g0158661' => 'rch', 'RcHm_v2.0_Chr2g0172741' => 'rch', 'RcHm_v2.0_Chr4g0429571' => 'rch', 'RcHm_v2.0_Chr5g0042471' => 'rch', 'RcHm_v2.0_Chr7g0189451' => 'rch', 'Rhsim08G0052000' => 'rsi', 'Rhsim08G0174400' => 'rsi', 'Rhsim08G0193200' => 'rsi', 'Rhsim10G0214800' => 'rsi', 'Rhsim10G0214900' => 'rsi', 'Rhsim10G0215000' => 'rsi', 'Rhsim12G0022900' => 'rsi', 'Rhsim12G0177500' => 'rsi', 'Rhsim12G0177700' => 'rsi', 'Sabra03G0122600' => 'sbr', 'Sabra05G0097400' => 'sbr', 'Sabra12G0064100' => 'sbr', 'Sabra15G0121300' => 'sbr', 'SalBow2G0642' => 'sbo', 'SalBow5G2667' => 'sbo', 'SalBow5G4873' => 'sbo', 'SalBow8G2395' => 'sbo', 'Sc03g0003290' => 'sci', 'Sc10g0010130' => 'sci', 'Sc22g0003650' => 'sci', 'Sed0001603' => 'sed', 'Sed0004259' => 'sed', 'Sed0006789' => 'sed', 'Sed0011838' => 'sed', 'Sed0012964' => 'sed', 'Sed0016383' => 'sed', 'Sed0019010' => 'sed', 'Sed0020188' => 'sed', 'SEGI_04702' => 'sgi', 'SEGI_17231' => 'sgi', 'SEGI_18877' => 'sgi', 'SEGI_25196' => 'sgi', 'SEGI_25515' => 'sgi', 'SEGI_28445' => 'sgi', 'SEGI_37452' => 'sgi', 'SGA_v2.0_scaffold188G40336' => 'sas', 'SGA_v2.0_scaffold228G43247' => 'sas', 'SGA_v2.0_scaffold280G46853' => 'sas', 'SGA_v2.0_scaffold34G13808' => 'sas', 'SGA_v2.0_scaffold40G15576' => 'sas', 'SGA_v2.0_scaffold611G53188' => 'sas', 'SGA_v2.0_scaffold78G25461' => 'sas', 'SGA_v2.0_scaffold90G27888' => 'sas', 'SHI08601' => 'shi', 'SHI08606' => 'shi', 'SHI17117' => 'shi', 'SHI17119' => 'shi', 'SMO118G0201' => 'smo', 'SMO169G0247' => 'smo', 'SMO176G0006' => 'smo', 'SMO176G0015' => 'smo', 'SMO202G0006' => 'smo', 'SMO240G0050' => 'smo', 'SMO286G0009' => 'smo', 'SMO338G0033' => 'smo', 'SMO356G0533' => 'smo', 'SMO364G0382' => 'smo', 'SMO367G0166' => 'smo', 'SMO367G1098' => 'smo', 'Solyc01g009920.3' => 'sly', 'Solyc01g099300.3' => 'sly', 'Solyc02g084700.3' => 'sly', 'Solyc03g097520.3' => 'sly', 'Solyc06g071580.3' => 'sly', 'Solyc10g081760.3' => 'sly', 'Sopen01g005480' => 'spe', 'Sopen01g042850' => 'spe', 'Sopen02g029370' => 'spe', 'Sopen03g028280' => 'spe', 'Sopen06g027870' => 'spe', 'Sopen10g032270' => 'spe', 'Sp5g18180' => 'spa', 'Sp6g12880' => 'spa', 'Sp6g30850' => 'spa', 'Sp7g22960' => 'spa', 'Sp7g34010' => 'spa', 'SpUn1326_0010' => 'spa', 'TAR371G0242' => 'tar', 'TAR622G0638' => 'tar', 'TAR628G1548' => 'tar', 'TAR629G1079' => 'tar', 'TAR629G3413' => 'tar', 'THA.LOC104804249' => 'tha', 'THA.LOC104808315' => 'tha', 'THA.LOC104809238' => 'tha', 'THA.LOC104825484' => 'tha', 'Thecc.01G025500' => 'tca', 'Thecc.03G015800' => 'tca', 'Thecc.03G018000' => 'tca', 'Thecc.03G134800' => 'tca', 'Thecc.04G014700' => 'tca', 'Thhalv10006991m.g' => 'esa', 'Thhalv10012707m.g' => 'esa', 'Thhalv10015739m.g' => 'esa', 'Thhalv10024553m.g' => 'esa', 'Thhalv10024673m.g' => 'esa', 'Thhalv10029187m.g' => 'esa', 'TPR.G12971' => 'tpr', 'TPR.G29396' => 'tpr', 'TPR.G33376' => 'tpr', 'TPR.G35508' => 'tpr', 'TPR.G35516' => 'tpr', 'TPR.G37317' => 'tpr', 'TPR.G37389' => 'tpr', 'TPR.G37523' => 'tpr', 'TPR.G559' => 'tpr', 'TWI14G0070' => 'twi', 'TWI14G0729' => 'twi', 'TWI18G0596' => 'twi', 'TWI39G0780' => 'twi', 'TWI39G0850' => 'twi', 'TWI73G1052' => 'twi', 'unitig_52.g17485' => 'ugi', 'unitig_61.g26355' => 'ugi', 'vmacro01040' => 'vma', 'vmacro16731' => 'vma', 'vmacro18270' => 'vma', 'vmacro19142' => 'vma', 'vmacro19407' => 'vma', 'vmacro19408' => 'vma', 'vmacro21899' => 'vma', 'vmacro21900' => 'vma', 'vmacro21901' => 'vma', 'VMungo0251G0490' => 'vmu', 'VMungo0251G1748' => 'vmu', 'VMungo1309G0421' => 'vmu', 'Zm00001eb086500' => 'zma', 'Zm00001eb150680' => 'zma', 'Zm00001eb162330' => 'zma', 'Zm00001eb203130' => 'zma', 'Zm00001eb369480' => 'zma', 'Zm00001eb382340' => 'zma', 'Zm00001eb416360' => 'zma' ) $gf_id = 'HOM05D000902' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000902' ) $data_identifier = 'HOM05D000902' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 13, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 10, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 6, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 9, 'hma' => (int) 12, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 4, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 6, 'ppa' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 6, 'rch' => (int) 9, 'rsi' => (int) 9, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 12, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 3, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416360' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":"";
$selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":"";
$num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000902', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '663', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02470' => 'bna', 'A01p16260' => 'bna', 'A02p01680' => 'bna', 'A03p16600' => 'bna', 'A03p55660' => 'bna', 'A03p64160' => 'bna', 'A03p64170' => 'bna', 'A08p31900' => 'bna', 'A09p59530' => 'bna', 'A10p08230' => 'bna', 'A10p25090' => 'bna', 'Aa31LG3G7100' => 'aar', 'Aa31LG3G7110' => 'aar', 'Aa31LG6G13160' => 'aar', 'Aa31LG7G10770' => 'aar', 'Aa31LG7G3830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2723' => 'aag', 'Actinidia08045' => 'ach', 'Actinidia08888' => 'ach', 'Actinidia18333' => 'ach', 'Actinidia19334' => 'ach', 'Actinidia25552' => 'ach', 'Actinidia26089' => 'ach', 'Actinidia30615' => 'ach', 'Actinidia30616' => 'ach', 'Actinidia33083' => 'ach', 'Actinidia35762' => 'ach', 'Ah.02g110620' => 'amhyb', 'Ah.11g046390' => 'amhyb', 'AL1G31670' => 'aly', 'AL6G23730' => 'aly', 'AL7G14740' => 'aly', 'AL7G14750' => 'aly', 'AL7G14760' => 'aly', 'AL7G28220' => 'aly', 'AL8G24940' => 'aly', 'Aqoxy3G01665' => 'aox', 'Aqoxy3G02853' => 'aox', 'Aqoxy5G01513' => 'aox', 'Aqoxy5G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8SKA4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ75LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKDA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0LJZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7REX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZP4YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWX7I5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2QKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS0L9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPCD8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q161UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC7XCF' => 'arhy', 'AT1G19100' => 'ath', 'AT4G24970' => 'ath', 'AT4G36270' => 'ath', 'AT4G36280' => 'ath', 'AT4G36290' => 'ath', 'AT5G13130' => 'ath', 'AT5G50780' => 'ath', 'ATR0582G266' => 'atr', 'ATR0661G195' => 'atr', 'ATR1152G031' => 'atr', 'Atru.chr11.2382' => 'acertr', 'Atru.chr12.2337' => 'acertr', 'Atru.chr3.744' => 'acertr', 'Atru.chr6.1870' => 'acertr', 'Atru.chr9.2515' => 'acertr', 'AUR62004120' => 'cqu', 'AUR62005667' => 'cqu', 'AUR62007634' => 'cqu', 'AUR62008186' => 'cqu', 'AUR62008187' => 'cqu', 'AUR62008188' => 'cqu', 'AUR62027954' => 'cqu', 'AUR62028766' => 'cqu', 'AUR62028767' => 'cqu', 'AUR62028768' => 'cqu', 'AUR62028886' => 'cqu', 'AUR62029563' => 'cqu', 'AUR62038832' => 'cqu', 'BcaB01g04149' => 'bca', 'BcaB03g12940' => 'bca', 'BcaB03g13090' => 'bca', 'BcaB03g14466' => 'bca', 'BcaB05g24035' => 'bca', 'BcaC01g06050' => 'bca', 'BcaC04g19148' => 'bca', 'BcaC04g20761' => 'bca', 'BcaC06g32845' => 'bca', 'BcaC07g41274' => 'bca', 'BcaC09g50827' => 'bca', 'BcaNung00741' => 'bca', 'BcaNung00742' => 'bca', 'BcaNung01859' => 'bca', 'BcaNung03985' => 'bca', 'BcaNung03989' => 'bca', 'BcaNung05661' => 'bca', 'BolC1t00257H' => 'bol', 'BolC1t01956H' => 'bol', 'BolC2t06534H' => 'bol', 'BolC3t14334H' => 'bol', 'BolC5t30451H' => 'bol', 'BolC7t45880H' => 'bol', 'BolC7t46586H' => 'bol', 'BolC8t49301H' => 'bol', 'BolC8t51837H' => 'bol', 'BolC9t56822H' => 'bol', 'BolC9t59235H' => 'bol', 'BraA01t00234Z' => 'bra', 'BraA01t01563Z' => 'bra', 'BraA02t05147Z' => 'bra', 'BraA03t10947Z' => 'bra', 'BraA03t14633Z' => 'bra', 'BraA08t35112Z' => 'bra', 'BraA09t41330Z' => 'bra', 'BraA10t44570Z' => 'bra', 'C01p02670' => 'bna', 'C01p20260' => 'bna', 'C02p05890' => 'bna', 'C03p19530' => 'bna', 'C05p17470' => 'bna', 'C07p53900' => 'bna', 'C07p61630' => 'bna', 'C08p16800' => 'bna', 'C08p42810' => 'bna', 'C09p39480' => 'bna', 'C09p63980' => 'bna', 'CAN.G1001.7' => 'can', 'CAN.G1034.55' => 'can', 'CAN.G143.7' => 'can', 'CAN.G3340.1' => 'can', 'CAN.G358.19' => 'can', 'CAN.G373.2' => 'can', 'CAN.G674.16' => 'can', 'CAN.G674.17' => 'can', 'CAN.G674.18' => 'can', 'CAN.G732.2' => 'can', 'CAN.G732.3' => 'can', 'CAN.G993.39' => 'can', 'CANSAT01G2052' => 'cansat', 'CANSAT80G0070' => 'cansat', 'CANSAT80G0483' => 'cansat', 'CANSAT80G0625' => 'cansat', 'CARHR019690' => 'chi', 'CARHR080280' => 'chi', 'CARHR152750' => 'chi', 'CARHR152760' => 'chi', 'CARHR152770' => 'chi', 'CARHR200340' => 'chi', 'CARHR232370' => 'chi', 'CARHR244670' => 'chi', 'CARHR244680' => 'chi', 'CARHR257520' => 'chi', 'Carub.0001s1872' => 'cru', 'Carub.0006s1130' => 'cru', 'Carub.0007s0396' => 'cru', 'Carub.0007s0397' => 'cru', 'Carub.0007s1608' => 'cru', 'Carub.0008s1068' => 'cru', 'Carub.0008s1077' => 'cru', 'Ca_16158_v3' => 'car', 'Ca_17571_v3' => 'car', 'Ca_21936_v3' => 'car', 'Ca_22350_v3' => 'car', 'CBR_g22445' => 'cbr', 'CBR_g26290' => 'cbr', 'Cc04_g09610' => 'ccan', 'Cc04_g12280' => 'ccan', 'Cc07_g10230' => 'ccan', 'CDE02G0093' => 'cde', 'CDE02G0701' => 'cde', 'CDE04G1050' => 'cde', 'CDE05G1833' => 'cde', 'CDE05G3058' => 'cde', 'CDE05G3380' => 'cde', 'CDE06G0536' => 'cde', 'Cfa006923' => 'cfa', 'Cfa009402' => 'cfa', 'Cfa018751' => 'cfa', 'Cfa019164' => 'cfa', 'Cfa022935' => 'cfa', 'Ciclev10019081m.g' => 'ccl', 'Ciclev10025076m.g' => 'ccl', 'Ciclev10030712m.g' => 'ccl', 'Ciclev10033760m.g' => 'ccl', 'CiPaw.05G105600' => 'cil', 'CiPaw.08G136700' => 'cil', 'CiPaw.11G003900' => 'cil', 'CiPaw.11G023700' => 'cil', 'CiPaw.12G003700' => 'cil', 'ClCG06G017100' => 'cla', 'ClCG06G018110' => 'cla', 'ClCG07G008800' => 'cla', 'ClCG07G015330' => 'cla', 'COL.COLO4_13698' => 'col', 'COL.COLO4_16659' => 'col', 'COL.COLO4_21986' => 'col', 'COL.COLO4_24049' => 'col', 'COL.COLO4_29061' => 'col', 'COL.COLO4_29075' => 'col', 'COL.COLO4_30094' => 'col', 'Cpa.g.c33689' => 'cpa', 'Cpa.g.sc108.39' => 'cpa', 'Cpa.g.sc108.41' => 'cpa', 'Cpa.g.sc1163.1' => 'cpa', 'Cpa.g.sc4.155' => 'cpa', 'Cpa.g.sc6.194' => 'cpa', 'CsaV3_1G000340' => 'csa', 'CsaV3_1G001400' => 'csa', 'CsaV3_4G002220' => 'csa', 'CsaV3_4G005370' => 'csa', 'CSS0007487' => 'camsi', 'CSS0008066' => 'camsi', 'CSS0009120' => 'camsi', 'CSS0015512' => 'camsi', 'CSS0022409' => 'camsi', 'CSS0025358' => 'camsi', 'CSS0044547' => 'camsi', 'DCAR_013057' => 'dca', 'DCAR_015058' => 'dca', 'DCAR_016027' => 'dca', 'DCAR_017327' => 'dca', 'DCAR_020743' => 'dca', 'DCAR_026157' => 'dca', 'DCAR_032339' => 'dca', 'DCAR_032340' => 'dca', 'Dinv11200' => 'din', 'Dinv11201' => 'din', 'Dinv20631' => 'din', 'Dinv23182' => 'din', 'Dinv33466' => 'din', 'Dinv33583' => 'din', 'Dinv38565' => 'din', 'Duzib068G0200' => 'dzi', 'Duzib147G0132' => 'dzi', 'Duzib147G0635' => 'dzi', 'Duzib205G1670' => 'dzi', 'Duzib251G0606' => 'dzi', 'ECA232G3336' => 'eca', 'ECA232G3763' => 'eca', 'ECA232G4845' => 'eca', 'ECA234G1607' => 'eca', 'ECA246G0932' => 'eca', 'ECA247G0781' => 'eca', 'ECA247G1932' => 'eca', 'ECA247G2079' => 'eca', 'ECA247G3338' => 'eca', 'ECA247G4115' => 'eca', 'EL10Ac3g06552' => 'bvu', 'EL10Ac5g10721' => 'bvu', 'EL10Ac5g10722' => 'bvu', 'EL10Ac5g10723' => 'bvu', 'EL10Ac5g11361' => 'bvu', 'EL10Ac6g13553' => 'bvu', 'EL10As8g23872' => 'bvu', 'Eucgr.B00250' => 'egr', 'Eucgr.B00251' => 'egr', 'Eucgr.B03533' => 'egr', 'Eucgr.I02381' => 'egr', 'Eucgr.K02700' => 'egr', 'FAN02G0174' => 'fan', 'FAN02G3146' => 'fan', 'FAN04G1672' => 'fan', 'FAN04G2273' => 'fan', 'FAN05G2791' => 'fan', 'FAN05G4035' => 'fan', 'FAN07G0834' => 'fan', 'FAN08G1198' => 'fan', 'FAN09G4182' => 'fan', 'FAN12G0496' => 'fan', 'FAN13G1027' => 'fan', 'FAN13G2951' => 'fan', 'FAN14G0705' => 'fan', 'FAN14G0720' => 'fan', 'FAN17G0201' => 'fan', 'FAN17G2665' => 'fan', 'FAN18G1456' => 'fan', 'FAN18G1525' => 'fan', 'FAN18G3500' => 'fan', 'FAN28G2670' => 'fan', 'FvH4_1g12391' => 'fve', 'FvH4_4g23220' => 'fve', 'FvH4_5g08810' => 'fve', 'FvH4_5g28960' => 'fve', 'FvH4_6g42820' => 'fve', 'FvH4_6g51110' => 'fve', 'Glyma.02G051802' => 'gma', 'Glyma.04G185300' => 'gma', 'Glyma.05G202900' => 'gma', 'Glyma.08G010300' => 'gma', 'Glyma.16G131900' => 'gma', 'Glyma.17G087900' => 'gma', 'Gohir.A07G048600' => 'ghi', 'Gohir.A11G179000' => 'ghi', 'Gohir.A12G140900' => 'ghi', 'Gohir.A12G140950' => 'ghi', 'Gohir.A12G191700' => 'ghi', 'Gohir.A13G086300' => 'ghi', 'Gohir.D07G052900' => 'ghi', 'Gohir.D11G186600' => 'ghi', 'Gohir.D12G145575' => 'ghi', 'Gohir.D12G145650' => 'ghi', 'Gohir.D12G145725' => 'ghi', 'Gohir.D12G194050' => 'ghi', 'Gohir.D13G091800' => 'ghi', 'Gorai.001G055900' => 'gra', 'Gorai.007G198400' => 'gra', 'Gorai.008G157000' => 'gra', 'Gorai.008G157100' => 'gra', 'Gorai.008G208700' => 'gra', 'Gorai.010G138700' => 'gra', 'GSVIVG01000977001' => 'vvi', 'GSVIVG01007708001' => 'vvi', 'GSVIVG01008587001' => 'vvi', 'GSVIVG01018849001' => 'vvi', 'GSVIVG01032432001' => 'vvi', 'HanXRQChr02g0034131' => 'han', 'HanXRQChr02g0035981' => 'han', 'HanXRQChr02g0035991' => 'han', 'HanXRQChr05g0155611' => 'han', 'HanXRQChr05g0155621' => 'han', 'HanXRQChr08g0236501' => 'han', 'HanXRQChr09g0261321' => 'han', 'HanXRQChr09g0272081' => 'han', 'HanXRQChr10g0310741' => 'han', 'HanXRQChr11g0325591' => 'han', 'HanXRQChr12g0385691' => 'han', 'HanXRQChr13g0387801' => 'han', 'HanXRQChr15g0463011' => 'han', 'Haze_03826' => 'cav', 'Haze_03827' => 'cav', 'Haze_07183' => 'cav', 'Haze_07537' => 'cav', 'Haze_07539' => 'cav', 'Haze_12461' => 'cav', 'Haze_16115' => 'cav', 'Haze_16808' => 'cav', 'Haze_18531' => 'cav', 'Hma1.2p1_0046F.1_g026700' => 'hma', 'Hma1.2p1_0046F.1_g026710' => 'hma', 'Hma1.2p1_0168F.1_g074340' => 'hma', 'Hma1.2p1_0266F.1_g107030' => 'hma', 'Hma1.2p1_0266F.1_g107060' => 'hma', 'Hma1.2p1_0275F.1_g110510' => 'hma', 'Hma1.2p1_0592F.1_g185490' => 'hma', 'Hma1.2p1_0592F.1_g185500' => 'hma', 'Hma1.2p1_0592F.1_g185510' => 'hma', 'Hma1.2p1_0592F.1_g185520' => 'hma', 'Hma1.2p1_0592F.1_g185530' => 'hma', 'Hma1.2p1_0818F.1_g223450' => 'hma', 'HPP92_009708' => 'vpl', 'HPP92_009793' => 'vpl', 'HPP92_009796' => 'vpl', 'HPP92_009797' => 'vpl', 'HPP92_014940' => 'vpl', 'HPP92_014988' => 'vpl', 'Hund02463' => 'sun', 'Hund02760' => 'sun', 'Hund05071' => 'sun', 'Hund10108' => 'sun', 'Hund11204' => 'sun', 'Hund14016' => 'sun', 'Hund16464' => 'sun', 'Lalb_Chr09g0333391' => 'lal', 'Lalb_Chr11g0070461' => 'lal', 'Lalb_Chr12g0201671' => 'lal', 'Lalb_Chr13g0297161' => 'lal', 'Lj1g0002823' => 'lja', 'Lj3C1074T6' => 'lonja', 'Lj4A212T28' => 'lonja', 'Lj4g0005516' => 'lja', 'Lj4g0013705' => 'lja', 'Lj4g0027865' => 'lja', 'Lj5C92G16' => 'lonja', 'Lj5C92T12' => 'lonja', 'Lj7C596T3' => 'lonja', 'Lj9A446G59' => 'lonja', 'Lj9A482G21' => 'lonja', 'Lsat_1_v5_gn_1_28261' => 'lsa', 'Lsat_1_v5_gn_1_28281' => 'lsa', 'Lsat_1_v5_gn_1_32721' => 'lsa', 'Lsat_1_v5_gn_4_151760' => 'lsa', 'Lsat_1_v5_gn_4_2120' => 'lsa', 'Lsat_1_v5_gn_4_75761' => 'lsa', 'Lsat_1_v5_gn_5_10920' => 'lsa', 'Manes.02G099900' => 'mes', 'Manes.11G096200' => 'mes', 'Manes.12G007200' => 'mes', 'Manes.14G048300' => 'mes', 'Manes.17G114700' => 'mes', 'Mapoly0002s0070' => 'mpo', 'Mapoly0029s0099' => 'mpo', 'MBI07_g24742_MAGBIO' => 'mbi', 'MBI10_g27988_MAGBIO' => 'mbi', 'MBI11_g13057_MAGBIO' => 'mbi', 'MD02G1137200' => 'mdo', 'MD06G1137200' => 'mdo', 'MD07G1122300' => 'mdo', 'MD09G1078200' => 'mdo', 'MD13G1123700' => 'mdo', 'MD14G1151900' => 'mdo', 'MD17G1030900' => 'mdo', 'MD17G1068200' => 'mdo', 'MD17G1068600' => 'mdo', 'Medtr3g077540' => 'mtr', 'Medtr4g105530' => 'mtr', 'Medtr8g076580' => 'mtr', 'Medtr8g076590' => 'mtr', 'Medtr8g096410' => 'mtr', 'MELO3C016411.2' => 'cme', 'MELO3C017780.2' => 'cme', 'MELO3C022560.2' => 'cme', 'MELO3C026187.2' => 'cme', 'MELO3C026286.2' => 'cme', 'MELO3C032854.2' => 'cme', 'Migut.H02495' => 'egut', 'Migut.I00561' => 'egut', 'Migut.K01015' => 'egut', 'Migut.K01016' => 'egut', 'Migut.L00743' => 'egut', 'Migut.L00744' => 'egut', 'Migut.L00746' => 'egut', 'Migut.L00798' => 'egut', 'Migut.L00799' => 'egut', 'Migut.N02096' => 'egut', 'MSTRG.11259' => 'ama', 'MSTRG.23142' => 'ama', 'MSTRG.2499' => 'ama', 'Nitab4.5_0000003g0730' => 'nta', 'Nitab4.5_0000137g0020' => 'nta', 'Nitab4.5_0000721g0210' => 'nta', 'Nitab4.5_0000723g0050' => 'nta', 'Nitab4.5_0000913g0070' => 'nta', 'Nitab4.5_0001332g0040' => 'nta', 'Nitab4.5_0001771g0050' => 'nta', 'Nitab4.5_0001918g0050' => 'nta', 'Nitab4.5_0002686g0030' => 'nta', 'Nitab4.5_0003156g0020' => 'nta', 'Nitab4.5_0003383g0040' => 'nta', 'Nitab4.5_0003918g0010' => 'nta', 'Nitab4.5_0006760g0010' => 'nta', 'Nn1g05981' => 'nnu', 'Nn1g06288' => 'nnu', 'Nn3g16371' => 'nnu', 'Nn3g16786' => 'nnu', 'Nn4g22232' => 'nnu', 'Oeu005144.1' => 'oeu', 'Oeu005145.1' => 'oeu', 'Oeu011348.1' => 'oeu', 'Oeu016415.1' => 'oeu', 'Oeu023501.1' => 'oeu', 'Oeu044473.1' => 'oeu', 'Oeu048892.2' => 'oeu', 'Os01g0549200' => 'osa', 'Os02g0469300' => 'osa', 'Os04g0311100' => 'osa', 'Os06g0474900' => 'osa', 'Os10g0181700' => 'osa', 'Os11g0454800' => 'osa', 'Peaxi162Scf00037g00714' => 'pax', 'Peaxi162Scf00084g01217' => 'pax', 'Peaxi162Scf00257g00217' => 'pax', 'Peaxi162Scf00516g00215' => 'pax', 'Peaxi162Scf00689g00123' => 'pax', 'PGR044G2719' => 'pgr', 'PGR083G1360' => 'pgr', 'PGR102G2849' => 'pgr', 'PGR119G2534' => 'pgr', 'PGSC0003DMG400003538' => 'stu', 'PGSC0003DMG400028138' => 'stu', 'PGSC0003DMG400031732' => 'stu', 'PGSC0003DMG400038165' => 'stu', 'Phvul.002G284600' => 'pvu', 'Phvul.003G258200' => 'pvu', 'Phvul.009G176500' => 'pvu', 'Potri.003G167201' => 'ptr', 'Potri.005G118400' => 'ptr', 'Potri.012G089000' => 'ptr', 'Potri.012G102800' => 'ptr', 'Potri.015G079400' => 'ptr', 'Potri.015G100900' => 'ptr', 'Pp3c14_9810' => 'ppa', 'Pp3c15_10450' => 'ppa', 'Pp3c20_19150' => 'ppa', 'Pp3c23_12740' => 'ppa', 'Pp3c23_6310' => 'ppa', 'Pp3c24_3720' => 'ppa', 'Pp3c27_2580' => 'ppa', 'Pp3c9_8990' => 'ppa', 'PRCOL_00002854' => 'pco', 'Prupe.1G221200' => 'ppe', 'Prupe.3G289000' => 'ppe', 'Prupe.5G147000' => 'ppe', 'Prupe.6G157300' => 'ppe', 'Prupe.7G163400' => 'ppe', 'Psat0s2177g0040' => 'psa', 'Psat3g174760' => 'psa', 'Psat3g192160' => 'psa', 'Psat4g058520' => 'psa', 'Psat4g096840' => 'psa', 'Psat7g037320' => 'psa', 'PSO017G1274' => 'pso', 'PSO017G5166' => 'pso', 'PSO063G4558' => 'pso', 'PSO170G4458' => 'pso', 'PSO170G5005' => 'pso', 'PSO210G6156' => 'pso', 'PSO210G6635' => 'pso', 'PSO210G7397' => 'pso', 'PSO210G7700' => 'pso', 'PSO455G0035' => 'pso', 'PSO455G0180' => 'pso', 'PSO478G4515' => 'pso', 'PSO832G1305' => 'pso', 'PSO832G3489' => 'pso', 'QL02p075247' => 'qlo', 'QL03p051148' => 'qlo', 'QL05p010313' => 'qlo', 'QL06p034627' => 'qlo', 'QL10p001889' => 'qlo', 'QL10p010846' => 'qlo', 'RcHm_v2.0_Chr1g0350621' => 'rch', 'RcHm_v2.0_Chr1g0350641' => 'rch', 'RcHm_v2.0_Chr2g0092891' => 'rch', 'RcHm_v2.0_Chr2g0100251' => 'rch', 'RcHm_v2.0_Chr2g0158661' => 'rch', 'RcHm_v2.0_Chr2g0172741' => 'rch', 'RcHm_v2.0_Chr4g0429571' => 'rch', 'RcHm_v2.0_Chr5g0042471' => 'rch', 'RcHm_v2.0_Chr7g0189451' => 'rch', 'Rhsim08G0052000' => 'rsi', 'Rhsim08G0174400' => 'rsi', 'Rhsim08G0193200' => 'rsi', 'Rhsim10G0214800' => 'rsi', 'Rhsim10G0214900' => 'rsi', 'Rhsim10G0215000' => 'rsi', 'Rhsim12G0022900' => 'rsi', 'Rhsim12G0177500' => 'rsi', 'Rhsim12G0177700' => 'rsi', 'Sabra03G0122600' => 'sbr', 'Sabra05G0097400' => 'sbr', 'Sabra12G0064100' => 'sbr', 'Sabra15G0121300' => 'sbr', 'SalBow2G0642' => 'sbo', 'SalBow5G2667' => 'sbo', 'SalBow5G4873' => 'sbo', 'SalBow8G2395' => 'sbo', 'Sc03g0003290' => 'sci', 'Sc10g0010130' => 'sci', 'Sc22g0003650' => 'sci', 'Sed0001603' => 'sed', 'Sed0004259' => 'sed', 'Sed0006789' => 'sed', 'Sed0011838' => 'sed', 'Sed0012964' => 'sed', 'Sed0016383' => 'sed', 'Sed0019010' => 'sed', 'Sed0020188' => 'sed', 'SEGI_04702' => 'sgi', 'SEGI_17231' => 'sgi', 'SEGI_18877' => 'sgi', 'SEGI_25196' => 'sgi', 'SEGI_25515' => 'sgi', 'SEGI_28445' => 'sgi', 'SEGI_37452' => 'sgi', 'SGA_v2.0_scaffold188G40336' => 'sas', 'SGA_v2.0_scaffold228G43247' => 'sas', 'SGA_v2.0_scaffold280G46853' => 'sas', 'SGA_v2.0_scaffold34G13808' => 'sas', 'SGA_v2.0_scaffold40G15576' => 'sas', 'SGA_v2.0_scaffold611G53188' => 'sas', 'SGA_v2.0_scaffold78G25461' => 'sas', 'SGA_v2.0_scaffold90G27888' => 'sas', 'SHI08601' => 'shi', 'SHI08606' => 'shi', 'SHI17117' => 'shi', 'SHI17119' => 'shi', 'SMO118G0201' => 'smo', 'SMO169G0247' => 'smo', 'SMO176G0006' => 'smo', 'SMO176G0015' => 'smo', 'SMO202G0006' => 'smo', 'SMO240G0050' => 'smo', 'SMO286G0009' => 'smo', 'SMO338G0033' => 'smo', 'SMO356G0533' => 'smo', 'SMO364G0382' => 'smo', 'SMO367G0166' => 'smo', 'SMO367G1098' => 'smo', 'Solyc01g009920.3' => 'sly', 'Solyc01g099300.3' => 'sly', 'Solyc02g084700.3' => 'sly', 'Solyc03g097520.3' => 'sly', 'Solyc06g071580.3' => 'sly', 'Solyc10g081760.3' => 'sly', 'Sopen01g005480' => 'spe', 'Sopen01g042850' => 'spe', 'Sopen02g029370' => 'spe', 'Sopen03g028280' => 'spe', 'Sopen06g027870' => 'spe', 'Sopen10g032270' => 'spe', 'Sp5g18180' => 'spa', 'Sp6g12880' => 'spa', 'Sp6g30850' => 'spa', 'Sp7g22960' => 'spa', 'Sp7g34010' => 'spa', 'SpUn1326_0010' => 'spa', 'TAR371G0242' => 'tar', 'TAR622G0638' => 'tar', 'TAR628G1548' => 'tar', 'TAR629G1079' => 'tar', 'TAR629G3413' => 'tar', 'THA.LOC104804249' => 'tha', 'THA.LOC104808315' => 'tha', 'THA.LOC104809238' => 'tha', 'THA.LOC104825484' => 'tha', 'Thecc.01G025500' => 'tca', 'Thecc.03G015800' => 'tca', 'Thecc.03G018000' => 'tca', 'Thecc.03G134800' => 'tca', 'Thecc.04G014700' => 'tca', 'Thhalv10006991m.g' => 'esa', 'Thhalv10012707m.g' => 'esa', 'Thhalv10015739m.g' => 'esa', 'Thhalv10024553m.g' => 'esa', 'Thhalv10024673m.g' => 'esa', 'Thhalv10029187m.g' => 'esa', 'TPR.G12971' => 'tpr', 'TPR.G29396' => 'tpr', 'TPR.G33376' => 'tpr', 'TPR.G35508' => 'tpr', 'TPR.G35516' => 'tpr', 'TPR.G37317' => 'tpr', 'TPR.G37389' => 'tpr', 'TPR.G37523' => 'tpr', 'TPR.G559' => 'tpr', 'TWI14G0070' => 'twi', 'TWI14G0729' => 'twi', 'TWI18G0596' => 'twi', 'TWI39G0780' => 'twi', 'TWI39G0850' => 'twi', 'TWI73G1052' => 'twi', 'unitig_52.g17485' => 'ugi', 'unitig_61.g26355' => 'ugi', 'vmacro01040' => 'vma', 'vmacro16731' => 'vma', 'vmacro18270' => 'vma', 'vmacro19142' => 'vma', 'vmacro19407' => 'vma', 'vmacro19408' => 'vma', 'vmacro21899' => 'vma', 'vmacro21900' => 'vma', 'vmacro21901' => 'vma', 'VMungo0251G0490' => 'vmu', 'VMungo0251G1748' => 'vmu', 'VMungo1309G0421' => 'vmu', 'Zm00001eb086500' => 'zma', 'Zm00001eb150680' => 'zma', 'Zm00001eb162330' => 'zma', 'Zm00001eb203130' => 'zma', 'Zm00001eb369480' => 'zma', 'Zm00001eb382340' => 'zma', 'Zm00001eb416360' => 'zma' ), 'gf_id' => 'HOM05D000902', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000902' ), 'data_identifier' => 'HOM05D000902', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000902', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '663', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02470' => 'bna', 'A01p16260' => 'bna', 'A02p01680' => 'bna', 'A03p16600' => 'bna', 'A03p55660' => 'bna', 'A03p64160' => 'bna', 'A03p64170' => 'bna', 'A08p31900' => 'bna', 'A09p59530' => 'bna', 'A10p08230' => 'bna', 'A10p25090' => 'bna', 'Aa31LG3G7100' => 'aar', 'Aa31LG3G7110' => 'aar', 'Aa31LG6G13160' => 'aar', 'Aa31LG7G10770' => 'aar', 'Aa31LG7G3830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2723' => 'aag', 'Actinidia08045' => 'ach', 'Actinidia08888' => 'ach', 'Actinidia18333' => 'ach', 'Actinidia19334' => 'ach', 'Actinidia25552' => 'ach', 'Actinidia26089' => 'ach', 'Actinidia30615' => 'ach', 'Actinidia30616' => 'ach', 'Actinidia33083' => 'ach', 'Actinidia35762' => 'ach', 'Ah.02g110620' => 'amhyb', 'Ah.11g046390' => 'amhyb', 'AL1G31670' => 'aly', 'AL6G23730' => 'aly', 'AL7G14740' => 'aly', 'AL7G14750' => 'aly', 'AL7G14760' => 'aly', 'AL7G28220' => 'aly', 'AL8G24940' => 'aly', 'Aqoxy3G01665' => 'aox', 'Aqoxy3G02853' => 'aox', 'Aqoxy5G01513' => 'aox', 'Aqoxy5G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8SKA4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ75LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKDA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0LJZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7REX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZP4YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWX7I5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2QKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS0L9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPCD8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q161UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC7XCF' => 'arhy', 'AT1G19100' => 'ath', 'AT4G24970' => 'ath', 'AT4G36270' => 'ath', 'AT4G36280' => 'ath', 'AT4G36290' => 'ath', 'AT5G13130' => 'ath', 'AT5G50780' => 'ath', 'ATR0582G266' => 'atr', 'ATR0661G195' => 'atr', 'ATR1152G031' => 'atr', 'Atru.chr11.2382' => 'acertr', 'Atru.chr12.2337' => 'acertr', 'Atru.chr3.744' => 'acertr', 'Atru.chr6.1870' => 'acertr', 'Atru.chr9.2515' => 'acertr', 'AUR62004120' => 'cqu', 'AUR62005667' => 'cqu', 'AUR62007634' => 'cqu', 'AUR62008186' => 'cqu', 'AUR62008187' => 'cqu', 'AUR62008188' => 'cqu', 'AUR62027954' => 'cqu', 'AUR62028766' => 'cqu', 'AUR62028767' => 'cqu', 'AUR62028768' => 'cqu', 'AUR62028886' => 'cqu', 'AUR62029563' => 'cqu', 'AUR62038832' => 'cqu', 'BcaB01g04149' => 'bca', 'BcaB03g12940' => 'bca', 'BcaB03g13090' => 'bca', 'BcaB03g14466' => 'bca', 'BcaB05g24035' => 'bca', 'BcaC01g06050' => 'bca', 'BcaC04g19148' => 'bca', 'BcaC04g20761' => 'bca', 'BcaC06g32845' => 'bca', 'BcaC07g41274' => 'bca', 'BcaC09g50827' => 'bca', 'BcaNung00741' => 'bca', 'BcaNung00742' => 'bca', 'BcaNung01859' => 'bca', 'BcaNung03985' => 'bca', 'BcaNung03989' => 'bca', 'BcaNung05661' => 'bca', 'BolC1t00257H' => 'bol', 'BolC1t01956H' => 'bol', 'BolC2t06534H' => 'bol', 'BolC3t14334H' => 'bol', 'BolC5t30451H' => 'bol', 'BolC7t45880H' => 'bol', 'BolC7t46586H' => 'bol', 'BolC8t49301H' => 'bol', 'BolC8t51837H' => 'bol', 'BolC9t56822H' => 'bol', 'BolC9t59235H' => 'bol', 'BraA01t00234Z' => 'bra', 'BraA01t01563Z' => 'bra', 'BraA02t05147Z' => 'bra', 'BraA03t10947Z' => 'bra', 'BraA03t14633Z' => 'bra', 'BraA08t35112Z' => 'bra', 'BraA09t41330Z' => 'bra', 'BraA10t44570Z' => 'bra', 'C01p02670' => 'bna', 'C01p20260' => 'bna', 'C02p05890' => 'bna', 'C03p19530' => 'bna', 'C05p17470' => 'bna', 'C07p53900' => 'bna', 'C07p61630' => 'bna', 'C08p16800' => 'bna', 'C08p42810' => 'bna', 'C09p39480' => 'bna', 'C09p63980' => 'bna', 'CAN.G1001.7' => 'can', 'CAN.G1034.55' => 'can', 'CAN.G143.7' => 'can', 'CAN.G3340.1' => 'can', 'CAN.G358.19' => 'can', 'CAN.G373.2' => 'can', 'CAN.G674.16' => 'can', 'CAN.G674.17' => 'can', 'CAN.G674.18' => 'can', 'CAN.G732.2' => 'can', 'CAN.G732.3' => 'can', 'CAN.G993.39' => 'can', 'CANSAT01G2052' => 'cansat', 'CANSAT80G0070' => 'cansat', 'CANSAT80G0483' => 'cansat', 'CANSAT80G0625' => 'cansat', 'CARHR019690' => 'chi', 'CARHR080280' => 'chi', 'CARHR152750' => 'chi', 'CARHR152760' => 'chi', 'CARHR152770' => 'chi', 'CARHR200340' => 'chi', 'CARHR232370' => 'chi', 'CARHR244670' => 'chi', 'CARHR244680' => 'chi', 'CARHR257520' => 'chi', 'Carub.0001s1872' => 'cru', 'Carub.0006s1130' => 'cru', 'Carub.0007s0396' => 'cru', 'Carub.0007s0397' => 'cru', 'Carub.0007s1608' => 'cru', 'Carub.0008s1068' => 'cru', 'Carub.0008s1077' => 'cru', 'Ca_16158_v3' => 'car', 'Ca_17571_v3' => 'car', 'Ca_21936_v3' => 'car', 'Ca_22350_v3' => 'car', 'CBR_g22445' => 'cbr', 'CBR_g26290' => 'cbr', 'Cc04_g09610' => 'ccan', 'Cc04_g12280' => 'ccan', 'Cc07_g10230' => 'ccan', 'CDE02G0093' => 'cde', 'CDE02G0701' => 'cde', 'CDE04G1050' => 'cde', 'CDE05G1833' => 'cde', 'CDE05G3058' => 'cde', 'CDE05G3380' => 'cde', 'CDE06G0536' => 'cde', 'Cfa006923' => 'cfa', 'Cfa009402' => 'cfa', 'Cfa018751' => 'cfa', 'Cfa019164' => 'cfa', 'Cfa022935' => 'cfa', 'Ciclev10019081m.g' => 'ccl', 'Ciclev10025076m.g' => 'ccl', 'Ciclev10030712m.g' => 'ccl', 'Ciclev10033760m.g' => 'ccl', 'CiPaw.05G105600' => 'cil', 'CiPaw.08G136700' => 'cil', 'CiPaw.11G003900' => 'cil', 'CiPaw.11G023700' => 'cil', 'CiPaw.12G003700' => 'cil', 'ClCG06G017100' => 'cla', 'ClCG06G018110' => 'cla', 'ClCG07G008800' => 'cla', 'ClCG07G015330' => 'cla', 'COL.COLO4_13698' => 'col', 'COL.COLO4_16659' => 'col', 'COL.COLO4_21986' => 'col', 'COL.COLO4_24049' => 'col', 'COL.COLO4_29061' => 'col', 'COL.COLO4_29075' => 'col', 'COL.COLO4_30094' => 'col', 'Cpa.g.c33689' => 'cpa', 'Cpa.g.sc108.39' => 'cpa', 'Cpa.g.sc108.41' => 'cpa', 'Cpa.g.sc1163.1' => 'cpa', 'Cpa.g.sc4.155' => 'cpa', 'Cpa.g.sc6.194' => 'cpa', 'CsaV3_1G000340' => 'csa', 'CsaV3_1G001400' => 'csa', 'CsaV3_4G002220' => 'csa', 'CsaV3_4G005370' => 'csa', 'CSS0007487' => 'camsi', 'CSS0008066' => 'camsi', 'CSS0009120' => 'camsi', 'CSS0015512' => 'camsi', 'CSS0022409' => 'camsi', 'CSS0025358' => 'camsi', 'CSS0044547' => 'camsi', 'DCAR_013057' => 'dca', 'DCAR_015058' => 'dca', 'DCAR_016027' => 'dca', 'DCAR_017327' => 'dca', 'DCAR_020743' => 'dca', 'DCAR_026157' => 'dca', 'DCAR_032339' => 'dca', 'DCAR_032340' => 'dca', 'Dinv11200' => 'din', 'Dinv11201' => 'din', 'Dinv20631' => 'din', 'Dinv23182' => 'din', 'Dinv33466' => 'din', 'Dinv33583' => 'din', 'Dinv38565' => 'din', 'Duzib068G0200' => 'dzi', 'Duzib147G0132' => 'dzi', 'Duzib147G0635' => 'dzi', 'Duzib205G1670' => 'dzi', 'Duzib251G0606' => 'dzi', 'ECA232G3336' => 'eca', 'ECA232G3763' => 'eca', 'ECA232G4845' => 'eca', 'ECA234G1607' => 'eca', 'ECA246G0932' => 'eca', 'ECA247G0781' => 'eca', 'ECA247G1932' => 'eca', 'ECA247G2079' => 'eca', 'ECA247G3338' => 'eca', 'ECA247G4115' => 'eca', 'EL10Ac3g06552' => 'bvu', 'EL10Ac5g10721' => 'bvu', 'EL10Ac5g10722' => 'bvu', 'EL10Ac5g10723' => 'bvu', 'EL10Ac5g11361' => 'bvu', 'EL10Ac6g13553' => 'bvu', 'EL10As8g23872' => 'bvu', 'Eucgr.B00250' => 'egr', 'Eucgr.B00251' => 'egr', 'Eucgr.B03533' => 'egr', 'Eucgr.I02381' => 'egr', 'Eucgr.K02700' => 'egr', 'FAN02G0174' => 'fan', 'FAN02G3146' => 'fan', 'FAN04G1672' => 'fan', 'FAN04G2273' => 'fan', 'FAN05G2791' => 'fan', 'FAN05G4035' => 'fan', 'FAN07G0834' => 'fan', 'FAN08G1198' => 'fan', 'FAN09G4182' => 'fan', 'FAN12G0496' => 'fan', 'FAN13G1027' => 'fan', 'FAN13G2951' => 'fan', 'FAN14G0705' => 'fan', 'FAN14G0720' => 'fan', 'FAN17G0201' => 'fan', 'FAN17G2665' => 'fan', 'FAN18G1456' => 'fan', 'FAN18G1525' => 'fan', 'FAN18G3500' => 'fan', 'FAN28G2670' => 'fan', 'FvH4_1g12391' => 'fve', 'FvH4_4g23220' => 'fve', 'FvH4_5g08810' => 'fve', 'FvH4_5g28960' => 'fve', 'FvH4_6g42820' => 'fve', 'FvH4_6g51110' => 'fve', 'Glyma.02G051802' => 'gma', 'Glyma.04G185300' => 'gma', 'Glyma.05G202900' => 'gma', 'Glyma.08G010300' => 'gma', 'Glyma.16G131900' => 'gma', 'Glyma.17G087900' => 'gma', 'Gohir.A07G048600' => 'ghi', 'Gohir.A11G179000' => 'ghi', 'Gohir.A12G140900' => 'ghi', 'Gohir.A12G140950' => 'ghi', 'Gohir.A12G191700' => 'ghi', 'Gohir.A13G086300' => 'ghi', 'Gohir.D07G052900' => 'ghi', 'Gohir.D11G186600' => 'ghi', 'Gohir.D12G145575' => 'ghi', 'Gohir.D12G145650' => 'ghi', 'Gohir.D12G145725' => 'ghi', 'Gohir.D12G194050' => 'ghi', 'Gohir.D13G091800' => 'ghi', 'Gorai.001G055900' => 'gra', 'Gorai.007G198400' => 'gra', 'Gorai.008G157000' => 'gra', 'Gorai.008G157100' => 'gra', 'Gorai.008G208700' => 'gra', 'Gorai.010G138700' => 'gra', 'GSVIVG01000977001' => 'vvi', 'GSVIVG01007708001' => 'vvi', 'GSVIVG01008587001' => 'vvi', 'GSVIVG01018849001' => 'vvi', 'GSVIVG01032432001' => 'vvi', 'HanXRQChr02g0034131' => 'han', 'HanXRQChr02g0035981' => 'han', 'HanXRQChr02g0035991' => 'han', 'HanXRQChr05g0155611' => 'han', 'HanXRQChr05g0155621' => 'han', 'HanXRQChr08g0236501' => 'han', 'HanXRQChr09g0261321' => 'han', 'HanXRQChr09g0272081' => 'han', 'HanXRQChr10g0310741' => 'han', 'HanXRQChr11g0325591' => 'han', 'HanXRQChr12g0385691' => 'han', 'HanXRQChr13g0387801' => 'han', 'HanXRQChr15g0463011' => 'han', 'Haze_03826' => 'cav', 'Haze_03827' => 'cav', 'Haze_07183' => 'cav', 'Haze_07537' => 'cav', 'Haze_07539' => 'cav', 'Haze_12461' => 'cav', 'Haze_16115' => 'cav', 'Haze_16808' => 'cav', 'Haze_18531' => 'cav', 'Hma1.2p1_0046F.1_g026700' => 'hma', 'Hma1.2p1_0046F.1_g026710' => 'hma', 'Hma1.2p1_0168F.1_g074340' => 'hma', 'Hma1.2p1_0266F.1_g107030' => 'hma', 'Hma1.2p1_0266F.1_g107060' => 'hma', 'Hma1.2p1_0275F.1_g110510' => 'hma', 'Hma1.2p1_0592F.1_g185490' => 'hma', 'Hma1.2p1_0592F.1_g185500' => 'hma', 'Hma1.2p1_0592F.1_g185510' => 'hma', 'Hma1.2p1_0592F.1_g185520' => 'hma', 'Hma1.2p1_0592F.1_g185530' => 'hma', 'Hma1.2p1_0818F.1_g223450' => 'hma', 'HPP92_009708' => 'vpl', 'HPP92_009793' => 'vpl', 'HPP92_009796' => 'vpl', 'HPP92_009797' => 'vpl', 'HPP92_014940' => 'vpl', 'HPP92_014988' => 'vpl', 'Hund02463' => 'sun', 'Hund02760' => 'sun', 'Hund05071' => 'sun', 'Hund10108' => 'sun', 'Hund11204' => 'sun', 'Hund14016' => 'sun', 'Hund16464' => 'sun', 'Lalb_Chr09g0333391' => 'lal', 'Lalb_Chr11g0070461' => 'lal', 'Lalb_Chr12g0201671' => 'lal', 'Lalb_Chr13g0297161' => 'lal', 'Lj1g0002823' => 'lja', 'Lj3C1074T6' => 'lonja', 'Lj4A212T28' => 'lonja', 'Lj4g0005516' => 'lja', 'Lj4g0013705' => 'lja', 'Lj4g0027865' => 'lja', 'Lj5C92G16' => 'lonja', 'Lj5C92T12' => 'lonja', 'Lj7C596T3' => 'lonja', 'Lj9A446G59' => 'lonja', 'Lj9A482G21' => 'lonja', 'Lsat_1_v5_gn_1_28261' => 'lsa', 'Lsat_1_v5_gn_1_28281' => 'lsa', 'Lsat_1_v5_gn_1_32721' => 'lsa', 'Lsat_1_v5_gn_4_151760' => 'lsa', 'Lsat_1_v5_gn_4_2120' => 'lsa', 'Lsat_1_v5_gn_4_75761' => 'lsa', 'Lsat_1_v5_gn_5_10920' => 'lsa', 'Manes.02G099900' => 'mes', 'Manes.11G096200' => 'mes', 'Manes.12G007200' => 'mes', 'Manes.14G048300' => 'mes', 'Manes.17G114700' => 'mes', 'Mapoly0002s0070' => 'mpo', 'Mapoly0029s0099' => 'mpo', 'MBI07_g24742_MAGBIO' => 'mbi', 'MBI10_g27988_MAGBIO' => 'mbi', 'MBI11_g13057_MAGBIO' => 'mbi', 'MD02G1137200' => 'mdo', 'MD06G1137200' => 'mdo', 'MD07G1122300' => 'mdo', 'MD09G1078200' => 'mdo', 'MD13G1123700' => 'mdo', 'MD14G1151900' => 'mdo', 'MD17G1030900' => 'mdo', 'MD17G1068200' => 'mdo', 'MD17G1068600' => 'mdo', 'Medtr3g077540' => 'mtr', 'Medtr4g105530' => 'mtr', 'Medtr8g076580' => 'mtr', 'Medtr8g076590' => 'mtr', 'Medtr8g096410' => 'mtr', 'MELO3C016411.2' => 'cme', 'MELO3C017780.2' => 'cme', 'MELO3C022560.2' => 'cme', 'MELO3C026187.2' => 'cme', 'MELO3C026286.2' => 'cme', 'MELO3C032854.2' => 'cme', 'Migut.H02495' => 'egut', 'Migut.I00561' => 'egut', 'Migut.K01015' => 'egut', 'Migut.K01016' => 'egut', 'Migut.L00743' => 'egut', 'Migut.L00744' => 'egut', 'Migut.L00746' => 'egut', 'Migut.L00798' => 'egut', 'Migut.L00799' => 'egut', 'Migut.N02096' => 'egut', 'MSTRG.11259' => 'ama', 'MSTRG.23142' => 'ama', 'MSTRG.2499' => 'ama', 'Nitab4.5_0000003g0730' => 'nta', 'Nitab4.5_0000137g0020' => 'nta', 'Nitab4.5_0000721g0210' => 'nta', 'Nitab4.5_0000723g0050' => 'nta', 'Nitab4.5_0000913g0070' => 'nta', 'Nitab4.5_0001332g0040' => 'nta', 'Nitab4.5_0001771g0050' => 'nta', 'Nitab4.5_0001918g0050' => 'nta', 'Nitab4.5_0002686g0030' => 'nta', 'Nitab4.5_0003156g0020' => 'nta', 'Nitab4.5_0003383g0040' => 'nta', 'Nitab4.5_0003918g0010' => 'nta', 'Nitab4.5_0006760g0010' => 'nta', 'Nn1g05981' => 'nnu', 'Nn1g06288' => 'nnu', 'Nn3g16371' => 'nnu', 'Nn3g16786' => 'nnu', 'Nn4g22232' => 'nnu', 'Oeu005144.1' => 'oeu', 'Oeu005145.1' => 'oeu', 'Oeu011348.1' => 'oeu', 'Oeu016415.1' => 'oeu', 'Oeu023501.1' => 'oeu', 'Oeu044473.1' => 'oeu', 'Oeu048892.2' => 'oeu', 'Os01g0549200' => 'osa', 'Os02g0469300' => 'osa', 'Os04g0311100' => 'osa', 'Os06g0474900' => 'osa', 'Os10g0181700' => 'osa', 'Os11g0454800' => 'osa', 'Peaxi162Scf00037g00714' => 'pax', 'Peaxi162Scf00084g01217' => 'pax', 'Peaxi162Scf00257g00217' => 'pax', 'Peaxi162Scf00516g00215' => 'pax', 'Peaxi162Scf00689g00123' => 'pax', 'PGR044G2719' => 'pgr', 'PGR083G1360' => 'pgr', 'PGR102G2849' => 'pgr', 'PGR119G2534' => 'pgr', 'PGSC0003DMG400003538' => 'stu', 'PGSC0003DMG400028138' => 'stu', 'PGSC0003DMG400031732' => 'stu', 'PGSC0003DMG400038165' => 'stu', 'Phvul.002G284600' => 'pvu', 'Phvul.003G258200' => 'pvu', 'Phvul.009G176500' => 'pvu', 'Potri.003G167201' => 'ptr', 'Potri.005G118400' => 'ptr', 'Potri.012G089000' => 'ptr', 'Potri.012G102800' => 'ptr', 'Potri.015G079400' => 'ptr', 'Potri.015G100900' => 'ptr', 'Pp3c14_9810' => 'ppa', 'Pp3c15_10450' => 'ppa', 'Pp3c20_19150' => 'ppa', 'Pp3c23_12740' => 'ppa', 'Pp3c23_6310' => 'ppa', 'Pp3c24_3720' => 'ppa', 'Pp3c27_2580' => 'ppa', 'Pp3c9_8990' => 'ppa', 'PRCOL_00002854' => 'pco', 'Prupe.1G221200' => 'ppe', 'Prupe.3G289000' => 'ppe', 'Prupe.5G147000' => 'ppe', 'Prupe.6G157300' => 'ppe', 'Prupe.7G163400' => 'ppe', 'Psat0s2177g0040' => 'psa', 'Psat3g174760' => 'psa', 'Psat3g192160' => 'psa', 'Psat4g058520' => 'psa', 'Psat4g096840' => 'psa', 'Psat7g037320' => 'psa', 'PSO017G1274' => 'pso', 'PSO017G5166' => 'pso', 'PSO063G4558' => 'pso', 'PSO170G4458' => 'pso', 'PSO170G5005' => 'pso', 'PSO210G6156' => 'pso', 'PSO210G6635' => 'pso', 'PSO210G7397' => 'pso', 'PSO210G7700' => 'pso', 'PSO455G0035' => 'pso', 'PSO455G0180' => 'pso', 'PSO478G4515' => 'pso', 'PSO832G1305' => 'pso', 'PSO832G3489' => 'pso', 'QL02p075247' => 'qlo', 'QL03p051148' => 'qlo', 'QL05p010313' => 'qlo', 'QL06p034627' => 'qlo', 'QL10p001889' => 'qlo', 'QL10p010846' => 'qlo', 'RcHm_v2.0_Chr1g0350621' => 'rch', 'RcHm_v2.0_Chr1g0350641' => 'rch', 'RcHm_v2.0_Chr2g0092891' => 'rch', 'RcHm_v2.0_Chr2g0100251' => 'rch', 'RcHm_v2.0_Chr2g0158661' => 'rch', 'RcHm_v2.0_Chr2g0172741' => 'rch', 'RcHm_v2.0_Chr4g0429571' => 'rch', 'RcHm_v2.0_Chr5g0042471' => 'rch', 'RcHm_v2.0_Chr7g0189451' => 'rch', 'Rhsim08G0052000' => 'rsi', 'Rhsim08G0174400' => 'rsi', 'Rhsim08G0193200' => 'rsi', 'Rhsim10G0214800' => 'rsi', 'Rhsim10G0214900' => 'rsi', 'Rhsim10G0215000' => 'rsi', 'Rhsim12G0022900' => 'rsi', 'Rhsim12G0177500' => 'rsi', 'Rhsim12G0177700' => 'rsi', 'Sabra03G0122600' => 'sbr', 'Sabra05G0097400' => 'sbr', 'Sabra12G0064100' => 'sbr', 'Sabra15G0121300' => 'sbr', 'SalBow2G0642' => 'sbo', 'SalBow5G2667' => 'sbo', 'SalBow5G4873' => 'sbo', 'SalBow8G2395' => 'sbo', 'Sc03g0003290' => 'sci', 'Sc10g0010130' => 'sci', 'Sc22g0003650' => 'sci', 'Sed0001603' => 'sed', 'Sed0004259' => 'sed', 'Sed0006789' => 'sed', 'Sed0011838' => 'sed', 'Sed0012964' => 'sed', 'Sed0016383' => 'sed', 'Sed0019010' => 'sed', 'Sed0020188' => 'sed', 'SEGI_04702' => 'sgi', 'SEGI_17231' => 'sgi', 'SEGI_18877' => 'sgi', 'SEGI_25196' => 'sgi', 'SEGI_25515' => 'sgi', 'SEGI_28445' => 'sgi', 'SEGI_37452' => 'sgi', 'SGA_v2.0_scaffold188G40336' => 'sas', 'SGA_v2.0_scaffold228G43247' => 'sas', 'SGA_v2.0_scaffold280G46853' => 'sas', 'SGA_v2.0_scaffold34G13808' => 'sas', 'SGA_v2.0_scaffold40G15576' => 'sas', 'SGA_v2.0_scaffold611G53188' => 'sas', 'SGA_v2.0_scaffold78G25461' => 'sas', 'SGA_v2.0_scaffold90G27888' => 'sas', 'SHI08601' => 'shi', 'SHI08606' => 'shi', 'SHI17117' => 'shi', 'SHI17119' => 'shi', 'SMO118G0201' => 'smo', 'SMO169G0247' => 'smo', 'SMO176G0006' => 'smo', 'SMO176G0015' => 'smo', 'SMO202G0006' => 'smo', 'SMO240G0050' => 'smo', 'SMO286G0009' => 'smo', 'SMO338G0033' => 'smo', 'SMO356G0533' => 'smo', 'SMO364G0382' => 'smo', 'SMO367G0166' => 'smo', 'SMO367G1098' => 'smo', 'Solyc01g009920.3' => 'sly', 'Solyc01g099300.3' => 'sly', 'Solyc02g084700.3' => 'sly', 'Solyc03g097520.3' => 'sly', 'Solyc06g071580.3' => 'sly', 'Solyc10g081760.3' => 'sly', 'Sopen01g005480' => 'spe', 'Sopen01g042850' => 'spe', 'Sopen02g029370' => 'spe', 'Sopen03g028280' => 'spe', 'Sopen06g027870' => 'spe', 'Sopen10g032270' => 'spe', 'Sp5g18180' => 'spa', 'Sp6g12880' => 'spa', 'Sp6g30850' => 'spa', 'Sp7g22960' => 'spa', 'Sp7g34010' => 'spa', 'SpUn1326_0010' => 'spa', 'TAR371G0242' => 'tar', 'TAR622G0638' => 'tar', 'TAR628G1548' => 'tar', 'TAR629G1079' => 'tar', 'TAR629G3413' => 'tar', 'THA.LOC104804249' => 'tha', 'THA.LOC104808315' => 'tha', 'THA.LOC104809238' => 'tha', 'THA.LOC104825484' => 'tha', 'Thecc.01G025500' => 'tca', 'Thecc.03G015800' => 'tca', 'Thecc.03G018000' => 'tca', 'Thecc.03G134800' => 'tca', 'Thecc.04G014700' => 'tca', 'Thhalv10006991m.g' => 'esa', 'Thhalv10012707m.g' => 'esa', 'Thhalv10015739m.g' => 'esa', 'Thhalv10024553m.g' => 'esa', 'Thhalv10024673m.g' => 'esa', 'Thhalv10029187m.g' => 'esa', 'TPR.G12971' => 'tpr', 'TPR.G29396' => 'tpr', 'TPR.G33376' => 'tpr', 'TPR.G35508' => 'tpr', 'TPR.G35516' => 'tpr', 'TPR.G37317' => 'tpr', 'TPR.G37389' => 'tpr', 'TPR.G37523' => 'tpr', 'TPR.G559' => 'tpr', 'TWI14G0070' => 'twi', 'TWI14G0729' => 'twi', 'TWI18G0596' => 'twi', 'TWI39G0780' => 'twi', 'TWI39G0850' => 'twi', 'TWI73G1052' => 'twi', 'unitig_52.g17485' => 'ugi', 'unitig_61.g26355' => 'ugi', 'vmacro01040' => 'vma', 'vmacro16731' => 'vma', 'vmacro18270' => 'vma', 'vmacro19142' => 'vma', 'vmacro19407' => 'vma', 'vmacro19408' => 'vma', 'vmacro21899' => 'vma', 'vmacro21900' => 'vma', 'vmacro21901' => 'vma', 'VMungo0251G0490' => 'vmu', 'VMungo0251G1748' => 'vmu', 'VMungo1309G0421' => 'vmu', 'Zm00001eb086500' => 'zma', 'Zm00001eb150680' => 'zma', 'Zm00001eb162330' => 'zma', 'Zm00001eb203130' => 'zma', 'Zm00001eb369480' => 'zma', 'Zm00001eb382340' => 'zma', 'Zm00001eb416360' => 'zma' ) $gf_id = 'HOM05D000902' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000902' ) $data_identifier = 'HOM05D000902' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 13, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 10, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 6, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 9, 'hma' => (int) 12, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 4, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 6, 'ppa' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 6, 'rch' => (int) 9, 'rsi' => (int) 9, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 12, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 3, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416360' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''
include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000902', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '663', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02470' => 'bna', 'A01p16260' => 'bna', 'A02p01680' => 'bna', 'A03p16600' => 'bna', 'A03p55660' => 'bna', 'A03p64160' => 'bna', 'A03p64170' => 'bna', 'A08p31900' => 'bna', 'A09p59530' => 'bna', 'A10p08230' => 'bna', 'A10p25090' => 'bna', 'Aa31LG3G7100' => 'aar', 'Aa31LG3G7110' => 'aar', 'Aa31LG6G13160' => 'aar', 'Aa31LG7G10770' => 'aar', 'Aa31LG7G3830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2723' => 'aag', 'Actinidia08045' => 'ach', 'Actinidia08888' => 'ach', 'Actinidia18333' => 'ach', 'Actinidia19334' => 'ach', 'Actinidia25552' => 'ach', 'Actinidia26089' => 'ach', 'Actinidia30615' => 'ach', 'Actinidia30616' => 'ach', 'Actinidia33083' => 'ach', 'Actinidia35762' => 'ach', 'Ah.02g110620' => 'amhyb', 'Ah.11g046390' => 'amhyb', 'AL1G31670' => 'aly', 'AL6G23730' => 'aly', 'AL7G14740' => 'aly', 'AL7G14750' => 'aly', 'AL7G14760' => 'aly', 'AL7G28220' => 'aly', 'AL8G24940' => 'aly', 'Aqoxy3G01665' => 'aox', 'Aqoxy3G02853' => 'aox', 'Aqoxy5G01513' => 'aox', 'Aqoxy5G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8SKA4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ75LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKDA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0LJZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7REX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZP4YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWX7I5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2QKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS0L9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPCD8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q161UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC7XCF' => 'arhy', 'AT1G19100' => 'ath', 'AT4G24970' => 'ath', 'AT4G36270' => 'ath', 'AT4G36280' => 'ath', 'AT4G36290' => 'ath', 'AT5G13130' => 'ath', 'AT5G50780' => 'ath', 'ATR0582G266' => 'atr', 'ATR0661G195' => 'atr', 'ATR1152G031' => 'atr', 'Atru.chr11.2382' => 'acertr', 'Atru.chr12.2337' => 'acertr', 'Atru.chr3.744' => 'acertr', 'Atru.chr6.1870' => 'acertr', 'Atru.chr9.2515' => 'acertr', 'AUR62004120' => 'cqu', 'AUR62005667' => 'cqu', 'AUR62007634' => 'cqu', 'AUR62008186' => 'cqu', 'AUR62008187' => 'cqu', 'AUR62008188' => 'cqu', 'AUR62027954' => 'cqu', 'AUR62028766' => 'cqu', 'AUR62028767' => 'cqu', 'AUR62028768' => 'cqu', 'AUR62028886' => 'cqu', 'AUR62029563' => 'cqu', 'AUR62038832' => 'cqu', 'BcaB01g04149' => 'bca', 'BcaB03g12940' => 'bca', 'BcaB03g13090' => 'bca', 'BcaB03g14466' => 'bca', 'BcaB05g24035' => 'bca', 'BcaC01g06050' => 'bca', 'BcaC04g19148' => 'bca', 'BcaC04g20761' => 'bca', 'BcaC06g32845' => 'bca', 'BcaC07g41274' => 'bca', 'BcaC09g50827' => 'bca', 'BcaNung00741' => 'bca', 'BcaNung00742' => 'bca', 'BcaNung01859' => 'bca', 'BcaNung03985' => 'bca', 'BcaNung03989' => 'bca', 'BcaNung05661' => 'bca', 'BolC1t00257H' => 'bol', 'BolC1t01956H' => 'bol', 'BolC2t06534H' => 'bol', 'BolC3t14334H' => 'bol', 'BolC5t30451H' => 'bol', 'BolC7t45880H' => 'bol', 'BolC7t46586H' => 'bol', 'BolC8t49301H' => 'bol', 'BolC8t51837H' => 'bol', 'BolC9t56822H' => 'bol', 'BolC9t59235H' => 'bol', 'BraA01t00234Z' => 'bra', 'BraA01t01563Z' => 'bra', 'BraA02t05147Z' => 'bra', 'BraA03t10947Z' => 'bra', 'BraA03t14633Z' => 'bra', 'BraA08t35112Z' => 'bra', 'BraA09t41330Z' => 'bra', 'BraA10t44570Z' => 'bra', 'C01p02670' => 'bna', 'C01p20260' => 'bna', 'C02p05890' => 'bna', 'C03p19530' => 'bna', 'C05p17470' => 'bna', 'C07p53900' => 'bna', 'C07p61630' => 'bna', 'C08p16800' => 'bna', 'C08p42810' => 'bna', 'C09p39480' => 'bna', 'C09p63980' => 'bna', 'CAN.G1001.7' => 'can', 'CAN.G1034.55' => 'can', 'CAN.G143.7' => 'can', 'CAN.G3340.1' => 'can', 'CAN.G358.19' => 'can', 'CAN.G373.2' => 'can', 'CAN.G674.16' => 'can', 'CAN.G674.17' => 'can', 'CAN.G674.18' => 'can', 'CAN.G732.2' => 'can', 'CAN.G732.3' => 'can', 'CAN.G993.39' => 'can', 'CANSAT01G2052' => 'cansat', 'CANSAT80G0070' => 'cansat', 'CANSAT80G0483' => 'cansat', 'CANSAT80G0625' => 'cansat', 'CARHR019690' => 'chi', 'CARHR080280' => 'chi', 'CARHR152750' => 'chi', 'CARHR152760' => 'chi', 'CARHR152770' => 'chi', 'CARHR200340' => 'chi', 'CARHR232370' => 'chi', 'CARHR244670' => 'chi', 'CARHR244680' => 'chi', 'CARHR257520' => 'chi', 'Carub.0001s1872' => 'cru', 'Carub.0006s1130' => 'cru', 'Carub.0007s0396' => 'cru', 'Carub.0007s0397' => 'cru', 'Carub.0007s1608' => 'cru', 'Carub.0008s1068' => 'cru', 'Carub.0008s1077' => 'cru', 'Ca_16158_v3' => 'car', 'Ca_17571_v3' => 'car', 'Ca_21936_v3' => 'car', 'Ca_22350_v3' => 'car', 'CBR_g22445' => 'cbr', 'CBR_g26290' => 'cbr', 'Cc04_g09610' => 'ccan', 'Cc04_g12280' => 'ccan', 'Cc07_g10230' => 'ccan', 'CDE02G0093' => 'cde', 'CDE02G0701' => 'cde', 'CDE04G1050' => 'cde', 'CDE05G1833' => 'cde', 'CDE05G3058' => 'cde', 'CDE05G3380' => 'cde', 'CDE06G0536' => 'cde', 'Cfa006923' => 'cfa', 'Cfa009402' => 'cfa', 'Cfa018751' => 'cfa', 'Cfa019164' => 'cfa', 'Cfa022935' => 'cfa', 'Ciclev10019081m.g' => 'ccl', 'Ciclev10025076m.g' => 'ccl', 'Ciclev10030712m.g' => 'ccl', 'Ciclev10033760m.g' => 'ccl', 'CiPaw.05G105600' => 'cil', 'CiPaw.08G136700' => 'cil', 'CiPaw.11G003900' => 'cil', 'CiPaw.11G023700' => 'cil', 'CiPaw.12G003700' => 'cil', 'ClCG06G017100' => 'cla', 'ClCG06G018110' => 'cla', 'ClCG07G008800' => 'cla', 'ClCG07G015330' => 'cla', 'COL.COLO4_13698' => 'col', 'COL.COLO4_16659' => 'col', 'COL.COLO4_21986' => 'col', 'COL.COLO4_24049' => 'col', 'COL.COLO4_29061' => 'col', 'COL.COLO4_29075' => 'col', 'COL.COLO4_30094' => 'col', 'Cpa.g.c33689' => 'cpa', 'Cpa.g.sc108.39' => 'cpa', 'Cpa.g.sc108.41' => 'cpa', 'Cpa.g.sc1163.1' => 'cpa', 'Cpa.g.sc4.155' => 'cpa', 'Cpa.g.sc6.194' => 'cpa', 'CsaV3_1G000340' => 'csa', 'CsaV3_1G001400' => 'csa', 'CsaV3_4G002220' => 'csa', 'CsaV3_4G005370' => 'csa', 'CSS0007487' => 'camsi', 'CSS0008066' => 'camsi', 'CSS0009120' => 'camsi', 'CSS0015512' => 'camsi', 'CSS0022409' => 'camsi', 'CSS0025358' => 'camsi', 'CSS0044547' => 'camsi', 'DCAR_013057' => 'dca', 'DCAR_015058' => 'dca', 'DCAR_016027' => 'dca', 'DCAR_017327' => 'dca', 'DCAR_020743' => 'dca', 'DCAR_026157' => 'dca', 'DCAR_032339' => 'dca', 'DCAR_032340' => 'dca', 'Dinv11200' => 'din', 'Dinv11201' => 'din', 'Dinv20631' => 'din', 'Dinv23182' => 'din', 'Dinv33466' => 'din', 'Dinv33583' => 'din', 'Dinv38565' => 'din', 'Duzib068G0200' => 'dzi', 'Duzib147G0132' => 'dzi', 'Duzib147G0635' => 'dzi', 'Duzib205G1670' => 'dzi', 'Duzib251G0606' => 'dzi', 'ECA232G3336' => 'eca', 'ECA232G3763' => 'eca', 'ECA232G4845' => 'eca', 'ECA234G1607' => 'eca', 'ECA246G0932' => 'eca', 'ECA247G0781' => 'eca', 'ECA247G1932' => 'eca', 'ECA247G2079' => 'eca', 'ECA247G3338' => 'eca', 'ECA247G4115' => 'eca', 'EL10Ac3g06552' => 'bvu', 'EL10Ac5g10721' => 'bvu', 'EL10Ac5g10722' => 'bvu', 'EL10Ac5g10723' => 'bvu', 'EL10Ac5g11361' => 'bvu', 'EL10Ac6g13553' => 'bvu', 'EL10As8g23872' => 'bvu', 'Eucgr.B00250' => 'egr', 'Eucgr.B00251' => 'egr', 'Eucgr.B03533' => 'egr', 'Eucgr.I02381' => 'egr', 'Eucgr.K02700' => 'egr', 'FAN02G0174' => 'fan', 'FAN02G3146' => 'fan', 'FAN04G1672' => 'fan', 'FAN04G2273' => 'fan', 'FAN05G2791' => 'fan', 'FAN05G4035' => 'fan', 'FAN07G0834' => 'fan', 'FAN08G1198' => 'fan', 'FAN09G4182' => 'fan', 'FAN12G0496' => 'fan', 'FAN13G1027' => 'fan', 'FAN13G2951' => 'fan', 'FAN14G0705' => 'fan', 'FAN14G0720' => 'fan', 'FAN17G0201' => 'fan', 'FAN17G2665' => 'fan', 'FAN18G1456' => 'fan', 'FAN18G1525' => 'fan', 'FAN18G3500' => 'fan', 'FAN28G2670' => 'fan', 'FvH4_1g12391' => 'fve', 'FvH4_4g23220' => 'fve', 'FvH4_5g08810' => 'fve', 'FvH4_5g28960' => 'fve', 'FvH4_6g42820' => 'fve', 'FvH4_6g51110' => 'fve', 'Glyma.02G051802' => 'gma', 'Glyma.04G185300' => 'gma', 'Glyma.05G202900' => 'gma', 'Glyma.08G010300' => 'gma', 'Glyma.16G131900' => 'gma', 'Glyma.17G087900' => 'gma', 'Gohir.A07G048600' => 'ghi', 'Gohir.A11G179000' => 'ghi', 'Gohir.A12G140900' => 'ghi', 'Gohir.A12G140950' => 'ghi', 'Gohir.A12G191700' => 'ghi', 'Gohir.A13G086300' => 'ghi', 'Gohir.D07G052900' => 'ghi', 'Gohir.D11G186600' => 'ghi', 'Gohir.D12G145575' => 'ghi', 'Gohir.D12G145650' => 'ghi', 'Gohir.D12G145725' => 'ghi', 'Gohir.D12G194050' => 'ghi', 'Gohir.D13G091800' => 'ghi', 'Gorai.001G055900' => 'gra', 'Gorai.007G198400' => 'gra', 'Gorai.008G157000' => 'gra', 'Gorai.008G157100' => 'gra', 'Gorai.008G208700' => 'gra', 'Gorai.010G138700' => 'gra', 'GSVIVG01000977001' => 'vvi', 'GSVIVG01007708001' => 'vvi', 'GSVIVG01008587001' => 'vvi', 'GSVIVG01018849001' => 'vvi', 'GSVIVG01032432001' => 'vvi', 'HanXRQChr02g0034131' => 'han', 'HanXRQChr02g0035981' => 'han', 'HanXRQChr02g0035991' => 'han', 'HanXRQChr05g0155611' => 'han', 'HanXRQChr05g0155621' => 'han', 'HanXRQChr08g0236501' => 'han', 'HanXRQChr09g0261321' => 'han', 'HanXRQChr09g0272081' => 'han', 'HanXRQChr10g0310741' => 'han', 'HanXRQChr11g0325591' => 'han', 'HanXRQChr12g0385691' => 'han', 'HanXRQChr13g0387801' => 'han', 'HanXRQChr15g0463011' => 'han', 'Haze_03826' => 'cav', 'Haze_03827' => 'cav', 'Haze_07183' => 'cav', 'Haze_07537' => 'cav', 'Haze_07539' => 'cav', 'Haze_12461' => 'cav', 'Haze_16115' => 'cav', 'Haze_16808' => 'cav', 'Haze_18531' => 'cav', 'Hma1.2p1_0046F.1_g026700' => 'hma', 'Hma1.2p1_0046F.1_g026710' => 'hma', 'Hma1.2p1_0168F.1_g074340' => 'hma', 'Hma1.2p1_0266F.1_g107030' => 'hma', 'Hma1.2p1_0266F.1_g107060' => 'hma', 'Hma1.2p1_0275F.1_g110510' => 'hma', 'Hma1.2p1_0592F.1_g185490' => 'hma', 'Hma1.2p1_0592F.1_g185500' => 'hma', 'Hma1.2p1_0592F.1_g185510' => 'hma', 'Hma1.2p1_0592F.1_g185520' => 'hma', 'Hma1.2p1_0592F.1_g185530' => 'hma', 'Hma1.2p1_0818F.1_g223450' => 'hma', 'HPP92_009708' => 'vpl', 'HPP92_009793' => 'vpl', 'HPP92_009796' => 'vpl', 'HPP92_009797' => 'vpl', 'HPP92_014940' => 'vpl', 'HPP92_014988' => 'vpl', 'Hund02463' => 'sun', 'Hund02760' => 'sun', 'Hund05071' => 'sun', 'Hund10108' => 'sun', 'Hund11204' => 'sun', 'Hund14016' => 'sun', 'Hund16464' => 'sun', 'Lalb_Chr09g0333391' => 'lal', 'Lalb_Chr11g0070461' => 'lal', 'Lalb_Chr12g0201671' => 'lal', 'Lalb_Chr13g0297161' => 'lal', 'Lj1g0002823' => 'lja', 'Lj3C1074T6' => 'lonja', 'Lj4A212T28' => 'lonja', 'Lj4g0005516' => 'lja', 'Lj4g0013705' => 'lja', 'Lj4g0027865' => 'lja', 'Lj5C92G16' => 'lonja', 'Lj5C92T12' => 'lonja', 'Lj7C596T3' => 'lonja', 'Lj9A446G59' => 'lonja', 'Lj9A482G21' => 'lonja', 'Lsat_1_v5_gn_1_28261' => 'lsa', 'Lsat_1_v5_gn_1_28281' => 'lsa', 'Lsat_1_v5_gn_1_32721' => 'lsa', 'Lsat_1_v5_gn_4_151760' => 'lsa', 'Lsat_1_v5_gn_4_2120' => 'lsa', 'Lsat_1_v5_gn_4_75761' => 'lsa', 'Lsat_1_v5_gn_5_10920' => 'lsa', 'Manes.02G099900' => 'mes', 'Manes.11G096200' => 'mes', 'Manes.12G007200' => 'mes', 'Manes.14G048300' => 'mes', 'Manes.17G114700' => 'mes', 'Mapoly0002s0070' => 'mpo', 'Mapoly0029s0099' => 'mpo', 'MBI07_g24742_MAGBIO' => 'mbi', 'MBI10_g27988_MAGBIO' => 'mbi', 'MBI11_g13057_MAGBIO' => 'mbi', 'MD02G1137200' => 'mdo', 'MD06G1137200' => 'mdo', 'MD07G1122300' => 'mdo', 'MD09G1078200' => 'mdo', 'MD13G1123700' => 'mdo', 'MD14G1151900' => 'mdo', 'MD17G1030900' => 'mdo', 'MD17G1068200' => 'mdo', 'MD17G1068600' => 'mdo', 'Medtr3g077540' => 'mtr', 'Medtr4g105530' => 'mtr', 'Medtr8g076580' => 'mtr', 'Medtr8g076590' => 'mtr', 'Medtr8g096410' => 'mtr', 'MELO3C016411.2' => 'cme', 'MELO3C017780.2' => 'cme', 'MELO3C022560.2' => 'cme', 'MELO3C026187.2' => 'cme', 'MELO3C026286.2' => 'cme', 'MELO3C032854.2' => 'cme', 'Migut.H02495' => 'egut', 'Migut.I00561' => 'egut', 'Migut.K01015' => 'egut', 'Migut.K01016' => 'egut', 'Migut.L00743' => 'egut', 'Migut.L00744' => 'egut', 'Migut.L00746' => 'egut', 'Migut.L00798' => 'egut', 'Migut.L00799' => 'egut', 'Migut.N02096' => 'egut', 'MSTRG.11259' => 'ama', 'MSTRG.23142' => 'ama', 'MSTRG.2499' => 'ama', 'Nitab4.5_0000003g0730' => 'nta', 'Nitab4.5_0000137g0020' => 'nta', 'Nitab4.5_0000721g0210' => 'nta', 'Nitab4.5_0000723g0050' => 'nta', 'Nitab4.5_0000913g0070' => 'nta', 'Nitab4.5_0001332g0040' => 'nta', 'Nitab4.5_0001771g0050' => 'nta', 'Nitab4.5_0001918g0050' => 'nta', 'Nitab4.5_0002686g0030' => 'nta', 'Nitab4.5_0003156g0020' => 'nta', 'Nitab4.5_0003383g0040' => 'nta', 'Nitab4.5_0003918g0010' => 'nta', 'Nitab4.5_0006760g0010' => 'nta', 'Nn1g05981' => 'nnu', 'Nn1g06288' => 'nnu', 'Nn3g16371' => 'nnu', 'Nn3g16786' => 'nnu', 'Nn4g22232' => 'nnu', 'Oeu005144.1' => 'oeu', 'Oeu005145.1' => 'oeu', 'Oeu011348.1' => 'oeu', 'Oeu016415.1' => 'oeu', 'Oeu023501.1' => 'oeu', 'Oeu044473.1' => 'oeu', 'Oeu048892.2' => 'oeu', 'Os01g0549200' => 'osa', 'Os02g0469300' => 'osa', 'Os04g0311100' => 'osa', 'Os06g0474900' => 'osa', 'Os10g0181700' => 'osa', 'Os11g0454800' => 'osa', 'Peaxi162Scf00037g00714' => 'pax', 'Peaxi162Scf00084g01217' => 'pax', 'Peaxi162Scf00257g00217' => 'pax', 'Peaxi162Scf00516g00215' => 'pax', 'Peaxi162Scf00689g00123' => 'pax', 'PGR044G2719' => 'pgr', 'PGR083G1360' => 'pgr', 'PGR102G2849' => 'pgr', 'PGR119G2534' => 'pgr', 'PGSC0003DMG400003538' => 'stu', 'PGSC0003DMG400028138' => 'stu', 'PGSC0003DMG400031732' => 'stu', 'PGSC0003DMG400038165' => 'stu', 'Phvul.002G284600' => 'pvu', 'Phvul.003G258200' => 'pvu', 'Phvul.009G176500' => 'pvu', 'Potri.003G167201' => 'ptr', 'Potri.005G118400' => 'ptr', 'Potri.012G089000' => 'ptr', 'Potri.012G102800' => 'ptr', 'Potri.015G079400' => 'ptr', 'Potri.015G100900' => 'ptr', 'Pp3c14_9810' => 'ppa', 'Pp3c15_10450' => 'ppa', 'Pp3c20_19150' => 'ppa', 'Pp3c23_12740' => 'ppa', 'Pp3c23_6310' => 'ppa', 'Pp3c24_3720' => 'ppa', 'Pp3c27_2580' => 'ppa', 'Pp3c9_8990' => 'ppa', 'PRCOL_00002854' => 'pco', 'Prupe.1G221200' => 'ppe', 'Prupe.3G289000' => 'ppe', 'Prupe.5G147000' => 'ppe', 'Prupe.6G157300' => 'ppe', 'Prupe.7G163400' => 'ppe', 'Psat0s2177g0040' => 'psa', 'Psat3g174760' => 'psa', 'Psat3g192160' => 'psa', 'Psat4g058520' => 'psa', 'Psat4g096840' => 'psa', 'Psat7g037320' => 'psa', 'PSO017G1274' => 'pso', 'PSO017G5166' => 'pso', 'PSO063G4558' => 'pso', 'PSO170G4458' => 'pso', 'PSO170G5005' => 'pso', 'PSO210G6156' => 'pso', 'PSO210G6635' => 'pso', 'PSO210G7397' => 'pso', 'PSO210G7700' => 'pso', 'PSO455G0035' => 'pso', 'PSO455G0180' => 'pso', 'PSO478G4515' => 'pso', 'PSO832G1305' => 'pso', 'PSO832G3489' => 'pso', 'QL02p075247' => 'qlo', 'QL03p051148' => 'qlo', 'QL05p010313' => 'qlo', 'QL06p034627' => 'qlo', 'QL10p001889' => 'qlo', 'QL10p010846' => 'qlo', 'RcHm_v2.0_Chr1g0350621' => 'rch', 'RcHm_v2.0_Chr1g0350641' => 'rch', 'RcHm_v2.0_Chr2g0092891' => 'rch', 'RcHm_v2.0_Chr2g0100251' => 'rch', 'RcHm_v2.0_Chr2g0158661' => 'rch', 'RcHm_v2.0_Chr2g0172741' => 'rch', 'RcHm_v2.0_Chr4g0429571' => 'rch', 'RcHm_v2.0_Chr5g0042471' => 'rch', 'RcHm_v2.0_Chr7g0189451' => 'rch', 'Rhsim08G0052000' => 'rsi', 'Rhsim08G0174400' => 'rsi', 'Rhsim08G0193200' => 'rsi', 'Rhsim10G0214800' => 'rsi', 'Rhsim10G0214900' => 'rsi', 'Rhsim10G0215000' => 'rsi', 'Rhsim12G0022900' => 'rsi', 'Rhsim12G0177500' => 'rsi', 'Rhsim12G0177700' => 'rsi', 'Sabra03G0122600' => 'sbr', 'Sabra05G0097400' => 'sbr', 'Sabra12G0064100' => 'sbr', 'Sabra15G0121300' => 'sbr', 'SalBow2G0642' => 'sbo', 'SalBow5G2667' => 'sbo', 'SalBow5G4873' => 'sbo', 'SalBow8G2395' => 'sbo', 'Sc03g0003290' => 'sci', 'Sc10g0010130' => 'sci', 'Sc22g0003650' => 'sci', 'Sed0001603' => 'sed', 'Sed0004259' => 'sed', 'Sed0006789' => 'sed', 'Sed0011838' => 'sed', 'Sed0012964' => 'sed', 'Sed0016383' => 'sed', 'Sed0019010' => 'sed', 'Sed0020188' => 'sed', 'SEGI_04702' => 'sgi', 'SEGI_17231' => 'sgi', 'SEGI_18877' => 'sgi', 'SEGI_25196' => 'sgi', 'SEGI_25515' => 'sgi', 'SEGI_28445' => 'sgi', 'SEGI_37452' => 'sgi', 'SGA_v2.0_scaffold188G40336' => 'sas', 'SGA_v2.0_scaffold228G43247' => 'sas', 'SGA_v2.0_scaffold280G46853' => 'sas', 'SGA_v2.0_scaffold34G13808' => 'sas', 'SGA_v2.0_scaffold40G15576' => 'sas', 'SGA_v2.0_scaffold611G53188' => 'sas', 'SGA_v2.0_scaffold78G25461' => 'sas', 'SGA_v2.0_scaffold90G27888' => 'sas', 'SHI08601' => 'shi', 'SHI08606' => 'shi', 'SHI17117' => 'shi', 'SHI17119' => 'shi', 'SMO118G0201' => 'smo', 'SMO169G0247' => 'smo', 'SMO176G0006' => 'smo', 'SMO176G0015' => 'smo', 'SMO202G0006' => 'smo', 'SMO240G0050' => 'smo', 'SMO286G0009' => 'smo', 'SMO338G0033' => 'smo', 'SMO356G0533' => 'smo', 'SMO364G0382' => 'smo', 'SMO367G0166' => 'smo', 'SMO367G1098' => 'smo', 'Solyc01g009920.3' => 'sly', 'Solyc01g099300.3' => 'sly', 'Solyc02g084700.3' => 'sly', 'Solyc03g097520.3' => 'sly', 'Solyc06g071580.3' => 'sly', 'Solyc10g081760.3' => 'sly', 'Sopen01g005480' => 'spe', 'Sopen01g042850' => 'spe', 'Sopen02g029370' => 'spe', 'Sopen03g028280' => 'spe', 'Sopen06g027870' => 'spe', 'Sopen10g032270' => 'spe', 'Sp5g18180' => 'spa', 'Sp6g12880' => 'spa', 'Sp6g30850' => 'spa', 'Sp7g22960' => 'spa', 'Sp7g34010' => 'spa', 'SpUn1326_0010' => 'spa', 'TAR371G0242' => 'tar', 'TAR622G0638' => 'tar', 'TAR628G1548' => 'tar', 'TAR629G1079' => 'tar', 'TAR629G3413' => 'tar', 'THA.LOC104804249' => 'tha', 'THA.LOC104808315' => 'tha', 'THA.LOC104809238' => 'tha', 'THA.LOC104825484' => 'tha', 'Thecc.01G025500' => 'tca', 'Thecc.03G015800' => 'tca', 'Thecc.03G018000' => 'tca', 'Thecc.03G134800' => 'tca', 'Thecc.04G014700' => 'tca', 'Thhalv10006991m.g' => 'esa', 'Thhalv10012707m.g' => 'esa', 'Thhalv10015739m.g' => 'esa', 'Thhalv10024553m.g' => 'esa', 'Thhalv10024673m.g' => 'esa', 'Thhalv10029187m.g' => 'esa', 'TPR.G12971' => 'tpr', 'TPR.G29396' => 'tpr', 'TPR.G33376' => 'tpr', 'TPR.G35508' => 'tpr', 'TPR.G35516' => 'tpr', 'TPR.G37317' => 'tpr', 'TPR.G37389' => 'tpr', 'TPR.G37523' => 'tpr', 'TPR.G559' => 'tpr', 'TWI14G0070' => 'twi', 'TWI14G0729' => 'twi', 'TWI18G0596' => 'twi', 'TWI39G0780' => 'twi', 'TWI39G0850' => 'twi', 'TWI73G1052' => 'twi', 'unitig_52.g17485' => 'ugi', 'unitig_61.g26355' => 'ugi', 'vmacro01040' => 'vma', 'vmacro16731' => 'vma', 'vmacro18270' => 'vma', 'vmacro19142' => 'vma', 'vmacro19407' => 'vma', 'vmacro19408' => 'vma', 'vmacro21899' => 'vma', 'vmacro21900' => 'vma', 'vmacro21901' => 'vma', 'VMungo0251G0490' => 'vmu', 'VMungo0251G1748' => 'vmu', 'VMungo1309G0421' => 'vmu', 'Zm00001eb086500' => 'zma', 'Zm00001eb150680' => 'zma', 'Zm00001eb162330' => 'zma', 'Zm00001eb203130' => 'zma', 'Zm00001eb369480' => 'zma', 'Zm00001eb382340' => 'zma', 'Zm00001eb416360' => 'zma' ), 'gf_id' => 'HOM05D000902', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000902' ), 'data_identifier' => 'HOM05D000902', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000902', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '663', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02470' => 'bna', 'A01p16260' => 'bna', 'A02p01680' => 'bna', 'A03p16600' => 'bna', 'A03p55660' => 'bna', 'A03p64160' => 'bna', 'A03p64170' => 'bna', 'A08p31900' => 'bna', 'A09p59530' => 'bna', 'A10p08230' => 'bna', 'A10p25090' => 'bna', 'Aa31LG3G7100' => 'aar', 'Aa31LG3G7110' => 'aar', 'Aa31LG6G13160' => 'aar', 'Aa31LG7G10770' => 'aar', 'Aa31LG7G3830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2723' => 'aag', 'Actinidia08045' => 'ach', 'Actinidia08888' => 'ach', 'Actinidia18333' => 'ach', 'Actinidia19334' => 'ach', 'Actinidia25552' => 'ach', 'Actinidia26089' => 'ach', 'Actinidia30615' => 'ach', 'Actinidia30616' => 'ach', 'Actinidia33083' => 'ach', 'Actinidia35762' => 'ach', 'Ah.02g110620' => 'amhyb', 'Ah.11g046390' => 'amhyb', 'AL1G31670' => 'aly', 'AL6G23730' => 'aly', 'AL7G14740' => 'aly', 'AL7G14750' => 'aly', 'AL7G14760' => 'aly', 'AL7G28220' => 'aly', 'AL8G24940' => 'aly', 'Aqoxy3G01665' => 'aox', 'Aqoxy3G02853' => 'aox', 'Aqoxy5G01513' => 'aox', 'Aqoxy5G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8SKA4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ75LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKDA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0LJZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7REX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZP4YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWX7I5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2QKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS0L9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPCD8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q161UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC7XCF' => 'arhy', 'AT1G19100' => 'ath', 'AT4G24970' => 'ath', 'AT4G36270' => 'ath', 'AT4G36280' => 'ath', 'AT4G36290' => 'ath', 'AT5G13130' => 'ath', 'AT5G50780' => 'ath', 'ATR0582G266' => 'atr', 'ATR0661G195' => 'atr', 'ATR1152G031' => 'atr', 'Atru.chr11.2382' => 'acertr', 'Atru.chr12.2337' => 'acertr', 'Atru.chr3.744' => 'acertr', 'Atru.chr6.1870' => 'acertr', 'Atru.chr9.2515' => 'acertr', 'AUR62004120' => 'cqu', 'AUR62005667' => 'cqu', 'AUR62007634' => 'cqu', 'AUR62008186' => 'cqu', 'AUR62008187' => 'cqu', 'AUR62008188' => 'cqu', 'AUR62027954' => 'cqu', 'AUR62028766' => 'cqu', 'AUR62028767' => 'cqu', 'AUR62028768' => 'cqu', 'AUR62028886' => 'cqu', 'AUR62029563' => 'cqu', 'AUR62038832' => 'cqu', 'BcaB01g04149' => 'bca', 'BcaB03g12940' => 'bca', 'BcaB03g13090' => 'bca', 'BcaB03g14466' => 'bca', 'BcaB05g24035' => 'bca', 'BcaC01g06050' => 'bca', 'BcaC04g19148' => 'bca', 'BcaC04g20761' => 'bca', 'BcaC06g32845' => 'bca', 'BcaC07g41274' => 'bca', 'BcaC09g50827' => 'bca', 'BcaNung00741' => 'bca', 'BcaNung00742' => 'bca', 'BcaNung01859' => 'bca', 'BcaNung03985' => 'bca', 'BcaNung03989' => 'bca', 'BcaNung05661' => 'bca', 'BolC1t00257H' => 'bol', 'BolC1t01956H' => 'bol', 'BolC2t06534H' => 'bol', 'BolC3t14334H' => 'bol', 'BolC5t30451H' => 'bol', 'BolC7t45880H' => 'bol', 'BolC7t46586H' => 'bol', 'BolC8t49301H' => 'bol', 'BolC8t51837H' => 'bol', 'BolC9t56822H' => 'bol', 'BolC9t59235H' => 'bol', 'BraA01t00234Z' => 'bra', 'BraA01t01563Z' => 'bra', 'BraA02t05147Z' => 'bra', 'BraA03t10947Z' => 'bra', 'BraA03t14633Z' => 'bra', 'BraA08t35112Z' => 'bra', 'BraA09t41330Z' => 'bra', 'BraA10t44570Z' => 'bra', 'C01p02670' => 'bna', 'C01p20260' => 'bna', 'C02p05890' => 'bna', 'C03p19530' => 'bna', 'C05p17470' => 'bna', 'C07p53900' => 'bna', 'C07p61630' => 'bna', 'C08p16800' => 'bna', 'C08p42810' => 'bna', 'C09p39480' => 'bna', 'C09p63980' => 'bna', 'CAN.G1001.7' => 'can', 'CAN.G1034.55' => 'can', 'CAN.G143.7' => 'can', 'CAN.G3340.1' => 'can', 'CAN.G358.19' => 'can', 'CAN.G373.2' => 'can', 'CAN.G674.16' => 'can', 'CAN.G674.17' => 'can', 'CAN.G674.18' => 'can', 'CAN.G732.2' => 'can', 'CAN.G732.3' => 'can', 'CAN.G993.39' => 'can', 'CANSAT01G2052' => 'cansat', 'CANSAT80G0070' => 'cansat', 'CANSAT80G0483' => 'cansat', 'CANSAT80G0625' => 'cansat', 'CARHR019690' => 'chi', 'CARHR080280' => 'chi', 'CARHR152750' => 'chi', 'CARHR152760' => 'chi', 'CARHR152770' => 'chi', 'CARHR200340' => 'chi', 'CARHR232370' => 'chi', 'CARHR244670' => 'chi', 'CARHR244680' => 'chi', 'CARHR257520' => 'chi', 'Carub.0001s1872' => 'cru', 'Carub.0006s1130' => 'cru', 'Carub.0007s0396' => 'cru', 'Carub.0007s0397' => 'cru', 'Carub.0007s1608' => 'cru', 'Carub.0008s1068' => 'cru', 'Carub.0008s1077' => 'cru', 'Ca_16158_v3' => 'car', 'Ca_17571_v3' => 'car', 'Ca_21936_v3' => 'car', 'Ca_22350_v3' => 'car', 'CBR_g22445' => 'cbr', 'CBR_g26290' => 'cbr', 'Cc04_g09610' => 'ccan', 'Cc04_g12280' => 'ccan', 'Cc07_g10230' => 'ccan', 'CDE02G0093' => 'cde', 'CDE02G0701' => 'cde', 'CDE04G1050' => 'cde', 'CDE05G1833' => 'cde', 'CDE05G3058' => 'cde', 'CDE05G3380' => 'cde', 'CDE06G0536' => 'cde', 'Cfa006923' => 'cfa', 'Cfa009402' => 'cfa', 'Cfa018751' => 'cfa', 'Cfa019164' => 'cfa', 'Cfa022935' => 'cfa', 'Ciclev10019081m.g' => 'ccl', 'Ciclev10025076m.g' => 'ccl', 'Ciclev10030712m.g' => 'ccl', 'Ciclev10033760m.g' => 'ccl', 'CiPaw.05G105600' => 'cil', 'CiPaw.08G136700' => 'cil', 'CiPaw.11G003900' => 'cil', 'CiPaw.11G023700' => 'cil', 'CiPaw.12G003700' => 'cil', 'ClCG06G017100' => 'cla', 'ClCG06G018110' => 'cla', 'ClCG07G008800' => 'cla', 'ClCG07G015330' => 'cla', 'COL.COLO4_13698' => 'col', 'COL.COLO4_16659' => 'col', 'COL.COLO4_21986' => 'col', 'COL.COLO4_24049' => 'col', 'COL.COLO4_29061' => 'col', 'COL.COLO4_29075' => 'col', 'COL.COLO4_30094' => 'col', 'Cpa.g.c33689' => 'cpa', 'Cpa.g.sc108.39' => 'cpa', 'Cpa.g.sc108.41' => 'cpa', 'Cpa.g.sc1163.1' => 'cpa', 'Cpa.g.sc4.155' => 'cpa', 'Cpa.g.sc6.194' => 'cpa', 'CsaV3_1G000340' => 'csa', 'CsaV3_1G001400' => 'csa', 'CsaV3_4G002220' => 'csa', 'CsaV3_4G005370' => 'csa', 'CSS0007487' => 'camsi', 'CSS0008066' => 'camsi', 'CSS0009120' => 'camsi', 'CSS0015512' => 'camsi', 'CSS0022409' => 'camsi', 'CSS0025358' => 'camsi', 'CSS0044547' => 'camsi', 'DCAR_013057' => 'dca', 'DCAR_015058' => 'dca', 'DCAR_016027' => 'dca', 'DCAR_017327' => 'dca', 'DCAR_020743' => 'dca', 'DCAR_026157' => 'dca', 'DCAR_032339' => 'dca', 'DCAR_032340' => 'dca', 'Dinv11200' => 'din', 'Dinv11201' => 'din', 'Dinv20631' => 'din', 'Dinv23182' => 'din', 'Dinv33466' => 'din', 'Dinv33583' => 'din', 'Dinv38565' => 'din', 'Duzib068G0200' => 'dzi', 'Duzib147G0132' => 'dzi', 'Duzib147G0635' => 'dzi', 'Duzib205G1670' => 'dzi', 'Duzib251G0606' => 'dzi', 'ECA232G3336' => 'eca', 'ECA232G3763' => 'eca', 'ECA232G4845' => 'eca', 'ECA234G1607' => 'eca', 'ECA246G0932' => 'eca', 'ECA247G0781' => 'eca', 'ECA247G1932' => 'eca', 'ECA247G2079' => 'eca', 'ECA247G3338' => 'eca', 'ECA247G4115' => 'eca', 'EL10Ac3g06552' => 'bvu', 'EL10Ac5g10721' => 'bvu', 'EL10Ac5g10722' => 'bvu', 'EL10Ac5g10723' => 'bvu', 'EL10Ac5g11361' => 'bvu', 'EL10Ac6g13553' => 'bvu', 'EL10As8g23872' => 'bvu', 'Eucgr.B00250' => 'egr', 'Eucgr.B00251' => 'egr', 'Eucgr.B03533' => 'egr', 'Eucgr.I02381' => 'egr', 'Eucgr.K02700' => 'egr', 'FAN02G0174' => 'fan', 'FAN02G3146' => 'fan', 'FAN04G1672' => 'fan', 'FAN04G2273' => 'fan', 'FAN05G2791' => 'fan', 'FAN05G4035' => 'fan', 'FAN07G0834' => 'fan', 'FAN08G1198' => 'fan', 'FAN09G4182' => 'fan', 'FAN12G0496' => 'fan', 'FAN13G1027' => 'fan', 'FAN13G2951' => 'fan', 'FAN14G0705' => 'fan', 'FAN14G0720' => 'fan', 'FAN17G0201' => 'fan', 'FAN17G2665' => 'fan', 'FAN18G1456' => 'fan', 'FAN18G1525' => 'fan', 'FAN18G3500' => 'fan', 'FAN28G2670' => 'fan', 'FvH4_1g12391' => 'fve', 'FvH4_4g23220' => 'fve', 'FvH4_5g08810' => 'fve', 'FvH4_5g28960' => 'fve', 'FvH4_6g42820' => 'fve', 'FvH4_6g51110' => 'fve', 'Glyma.02G051802' => 'gma', 'Glyma.04G185300' => 'gma', 'Glyma.05G202900' => 'gma', 'Glyma.08G010300' => 'gma', 'Glyma.16G131900' => 'gma', 'Glyma.17G087900' => 'gma', 'Gohir.A07G048600' => 'ghi', 'Gohir.A11G179000' => 'ghi', 'Gohir.A12G140900' => 'ghi', 'Gohir.A12G140950' => 'ghi', 'Gohir.A12G191700' => 'ghi', 'Gohir.A13G086300' => 'ghi', 'Gohir.D07G052900' => 'ghi', 'Gohir.D11G186600' => 'ghi', 'Gohir.D12G145575' => 'ghi', 'Gohir.D12G145650' => 'ghi', 'Gohir.D12G145725' => 'ghi', 'Gohir.D12G194050' => 'ghi', 'Gohir.D13G091800' => 'ghi', 'Gorai.001G055900' => 'gra', 'Gorai.007G198400' => 'gra', 'Gorai.008G157000' => 'gra', 'Gorai.008G157100' => 'gra', 'Gorai.008G208700' => 'gra', 'Gorai.010G138700' => 'gra', 'GSVIVG01000977001' => 'vvi', 'GSVIVG01007708001' => 'vvi', 'GSVIVG01008587001' => 'vvi', 'GSVIVG01018849001' => 'vvi', 'GSVIVG01032432001' => 'vvi', 'HanXRQChr02g0034131' => 'han', 'HanXRQChr02g0035981' => 'han', 'HanXRQChr02g0035991' => 'han', 'HanXRQChr05g0155611' => 'han', 'HanXRQChr05g0155621' => 'han', 'HanXRQChr08g0236501' => 'han', 'HanXRQChr09g0261321' => 'han', 'HanXRQChr09g0272081' => 'han', 'HanXRQChr10g0310741' => 'han', 'HanXRQChr11g0325591' => 'han', 'HanXRQChr12g0385691' => 'han', 'HanXRQChr13g0387801' => 'han', 'HanXRQChr15g0463011' => 'han', 'Haze_03826' => 'cav', 'Haze_03827' => 'cav', 'Haze_07183' => 'cav', 'Haze_07537' => 'cav', 'Haze_07539' => 'cav', 'Haze_12461' => 'cav', 'Haze_16115' => 'cav', 'Haze_16808' => 'cav', 'Haze_18531' => 'cav', 'Hma1.2p1_0046F.1_g026700' => 'hma', 'Hma1.2p1_0046F.1_g026710' => 'hma', 'Hma1.2p1_0168F.1_g074340' => 'hma', 'Hma1.2p1_0266F.1_g107030' => 'hma', 'Hma1.2p1_0266F.1_g107060' => 'hma', 'Hma1.2p1_0275F.1_g110510' => 'hma', 'Hma1.2p1_0592F.1_g185490' => 'hma', 'Hma1.2p1_0592F.1_g185500' => 'hma', 'Hma1.2p1_0592F.1_g185510' => 'hma', 'Hma1.2p1_0592F.1_g185520' => 'hma', 'Hma1.2p1_0592F.1_g185530' => 'hma', 'Hma1.2p1_0818F.1_g223450' => 'hma', 'HPP92_009708' => 'vpl', 'HPP92_009793' => 'vpl', 'HPP92_009796' => 'vpl', 'HPP92_009797' => 'vpl', 'HPP92_014940' => 'vpl', 'HPP92_014988' => 'vpl', 'Hund02463' => 'sun', 'Hund02760' => 'sun', 'Hund05071' => 'sun', 'Hund10108' => 'sun', 'Hund11204' => 'sun', 'Hund14016' => 'sun', 'Hund16464' => 'sun', 'Lalb_Chr09g0333391' => 'lal', 'Lalb_Chr11g0070461' => 'lal', 'Lalb_Chr12g0201671' => 'lal', 'Lalb_Chr13g0297161' => 'lal', 'Lj1g0002823' => 'lja', 'Lj3C1074T6' => 'lonja', 'Lj4A212T28' => 'lonja', 'Lj4g0005516' => 'lja', 'Lj4g0013705' => 'lja', 'Lj4g0027865' => 'lja', 'Lj5C92G16' => 'lonja', 'Lj5C92T12' => 'lonja', 'Lj7C596T3' => 'lonja', 'Lj9A446G59' => 'lonja', 'Lj9A482G21' => 'lonja', 'Lsat_1_v5_gn_1_28261' => 'lsa', 'Lsat_1_v5_gn_1_28281' => 'lsa', 'Lsat_1_v5_gn_1_32721' => 'lsa', 'Lsat_1_v5_gn_4_151760' => 'lsa', 'Lsat_1_v5_gn_4_2120' => 'lsa', 'Lsat_1_v5_gn_4_75761' => 'lsa', 'Lsat_1_v5_gn_5_10920' => 'lsa', 'Manes.02G099900' => 'mes', 'Manes.11G096200' => 'mes', 'Manes.12G007200' => 'mes', 'Manes.14G048300' => 'mes', 'Manes.17G114700' => 'mes', 'Mapoly0002s0070' => 'mpo', 'Mapoly0029s0099' => 'mpo', 'MBI07_g24742_MAGBIO' => 'mbi', 'MBI10_g27988_MAGBIO' => 'mbi', 'MBI11_g13057_MAGBIO' => 'mbi', 'MD02G1137200' => 'mdo', 'MD06G1137200' => 'mdo', 'MD07G1122300' => 'mdo', 'MD09G1078200' => 'mdo', 'MD13G1123700' => 'mdo', 'MD14G1151900' => 'mdo', 'MD17G1030900' => 'mdo', 'MD17G1068200' => 'mdo', 'MD17G1068600' => 'mdo', 'Medtr3g077540' => 'mtr', 'Medtr4g105530' => 'mtr', 'Medtr8g076580' => 'mtr', 'Medtr8g076590' => 'mtr', 'Medtr8g096410' => 'mtr', 'MELO3C016411.2' => 'cme', 'MELO3C017780.2' => 'cme', 'MELO3C022560.2' => 'cme', 'MELO3C026187.2' => 'cme', 'MELO3C026286.2' => 'cme', 'MELO3C032854.2' => 'cme', 'Migut.H02495' => 'egut', 'Migut.I00561' => 'egut', 'Migut.K01015' => 'egut', 'Migut.K01016' => 'egut', 'Migut.L00743' => 'egut', 'Migut.L00744' => 'egut', 'Migut.L00746' => 'egut', 'Migut.L00798' => 'egut', 'Migut.L00799' => 'egut', 'Migut.N02096' => 'egut', 'MSTRG.11259' => 'ama', 'MSTRG.23142' => 'ama', 'MSTRG.2499' => 'ama', 'Nitab4.5_0000003g0730' => 'nta', 'Nitab4.5_0000137g0020' => 'nta', 'Nitab4.5_0000721g0210' => 'nta', 'Nitab4.5_0000723g0050' => 'nta', 'Nitab4.5_0000913g0070' => 'nta', 'Nitab4.5_0001332g0040' => 'nta', 'Nitab4.5_0001771g0050' => 'nta', 'Nitab4.5_0001918g0050' => 'nta', 'Nitab4.5_0002686g0030' => 'nta', 'Nitab4.5_0003156g0020' => 'nta', 'Nitab4.5_0003383g0040' => 'nta', 'Nitab4.5_0003918g0010' => 'nta', 'Nitab4.5_0006760g0010' => 'nta', 'Nn1g05981' => 'nnu', 'Nn1g06288' => 'nnu', 'Nn3g16371' => 'nnu', 'Nn3g16786' => 'nnu', 'Nn4g22232' => 'nnu', 'Oeu005144.1' => 'oeu', 'Oeu005145.1' => 'oeu', 'Oeu011348.1' => 'oeu', 'Oeu016415.1' => 'oeu', 'Oeu023501.1' => 'oeu', 'Oeu044473.1' => 'oeu', 'Oeu048892.2' => 'oeu', 'Os01g0549200' => 'osa', 'Os02g0469300' => 'osa', 'Os04g0311100' => 'osa', 'Os06g0474900' => 'osa', 'Os10g0181700' => 'osa', 'Os11g0454800' => 'osa', 'Peaxi162Scf00037g00714' => 'pax', 'Peaxi162Scf00084g01217' => 'pax', 'Peaxi162Scf00257g00217' => 'pax', 'Peaxi162Scf00516g00215' => 'pax', 'Peaxi162Scf00689g00123' => 'pax', 'PGR044G2719' => 'pgr', 'PGR083G1360' => 'pgr', 'PGR102G2849' => 'pgr', 'PGR119G2534' => 'pgr', 'PGSC0003DMG400003538' => 'stu', 'PGSC0003DMG400028138' => 'stu', 'PGSC0003DMG400031732' => 'stu', 'PGSC0003DMG400038165' => 'stu', 'Phvul.002G284600' => 'pvu', 'Phvul.003G258200' => 'pvu', 'Phvul.009G176500' => 'pvu', 'Potri.003G167201' => 'ptr', 'Potri.005G118400' => 'ptr', 'Potri.012G089000' => 'ptr', 'Potri.012G102800' => 'ptr', 'Potri.015G079400' => 'ptr', 'Potri.015G100900' => 'ptr', 'Pp3c14_9810' => 'ppa', 'Pp3c15_10450' => 'ppa', 'Pp3c20_19150' => 'ppa', 'Pp3c23_12740' => 'ppa', 'Pp3c23_6310' => 'ppa', 'Pp3c24_3720' => 'ppa', 'Pp3c27_2580' => 'ppa', 'Pp3c9_8990' => 'ppa', 'PRCOL_00002854' => 'pco', 'Prupe.1G221200' => 'ppe', 'Prupe.3G289000' => 'ppe', 'Prupe.5G147000' => 'ppe', 'Prupe.6G157300' => 'ppe', 'Prupe.7G163400' => 'ppe', 'Psat0s2177g0040' => 'psa', 'Psat3g174760' => 'psa', 'Psat3g192160' => 'psa', 'Psat4g058520' => 'psa', 'Psat4g096840' => 'psa', 'Psat7g037320' => 'psa', 'PSO017G1274' => 'pso', 'PSO017G5166' => 'pso', 'PSO063G4558' => 'pso', 'PSO170G4458' => 'pso', 'PSO170G5005' => 'pso', 'PSO210G6156' => 'pso', 'PSO210G6635' => 'pso', 'PSO210G7397' => 'pso', 'PSO210G7700' => 'pso', 'PSO455G0035' => 'pso', 'PSO455G0180' => 'pso', 'PSO478G4515' => 'pso', 'PSO832G1305' => 'pso', 'PSO832G3489' => 'pso', 'QL02p075247' => 'qlo', 'QL03p051148' => 'qlo', 'QL05p010313' => 'qlo', 'QL06p034627' => 'qlo', 'QL10p001889' => 'qlo', 'QL10p010846' => 'qlo', 'RcHm_v2.0_Chr1g0350621' => 'rch', 'RcHm_v2.0_Chr1g0350641' => 'rch', 'RcHm_v2.0_Chr2g0092891' => 'rch', 'RcHm_v2.0_Chr2g0100251' => 'rch', 'RcHm_v2.0_Chr2g0158661' => 'rch', 'RcHm_v2.0_Chr2g0172741' => 'rch', 'RcHm_v2.0_Chr4g0429571' => 'rch', 'RcHm_v2.0_Chr5g0042471' => 'rch', 'RcHm_v2.0_Chr7g0189451' => 'rch', 'Rhsim08G0052000' => 'rsi', 'Rhsim08G0174400' => 'rsi', 'Rhsim08G0193200' => 'rsi', 'Rhsim10G0214800' => 'rsi', 'Rhsim10G0214900' => 'rsi', 'Rhsim10G0215000' => 'rsi', 'Rhsim12G0022900' => 'rsi', 'Rhsim12G0177500' => 'rsi', 'Rhsim12G0177700' => 'rsi', 'Sabra03G0122600' => 'sbr', 'Sabra05G0097400' => 'sbr', 'Sabra12G0064100' => 'sbr', 'Sabra15G0121300' => 'sbr', 'SalBow2G0642' => 'sbo', 'SalBow5G2667' => 'sbo', 'SalBow5G4873' => 'sbo', 'SalBow8G2395' => 'sbo', 'Sc03g0003290' => 'sci', 'Sc10g0010130' => 'sci', 'Sc22g0003650' => 'sci', 'Sed0001603' => 'sed', 'Sed0004259' => 'sed', 'Sed0006789' => 'sed', 'Sed0011838' => 'sed', 'Sed0012964' => 'sed', 'Sed0016383' => 'sed', 'Sed0019010' => 'sed', 'Sed0020188' => 'sed', 'SEGI_04702' => 'sgi', 'SEGI_17231' => 'sgi', 'SEGI_18877' => 'sgi', 'SEGI_25196' => 'sgi', 'SEGI_25515' => 'sgi', 'SEGI_28445' => 'sgi', 'SEGI_37452' => 'sgi', 'SGA_v2.0_scaffold188G40336' => 'sas', 'SGA_v2.0_scaffold228G43247' => 'sas', 'SGA_v2.0_scaffold280G46853' => 'sas', 'SGA_v2.0_scaffold34G13808' => 'sas', 'SGA_v2.0_scaffold40G15576' => 'sas', 'SGA_v2.0_scaffold611G53188' => 'sas', 'SGA_v2.0_scaffold78G25461' => 'sas', 'SGA_v2.0_scaffold90G27888' => 'sas', 'SHI08601' => 'shi', 'SHI08606' => 'shi', 'SHI17117' => 'shi', 'SHI17119' => 'shi', 'SMO118G0201' => 'smo', 'SMO169G0247' => 'smo', 'SMO176G0006' => 'smo', 'SMO176G0015' => 'smo', 'SMO202G0006' => 'smo', 'SMO240G0050' => 'smo', 'SMO286G0009' => 'smo', 'SMO338G0033' => 'smo', 'SMO356G0533' => 'smo', 'SMO364G0382' => 'smo', 'SMO367G0166' => 'smo', 'SMO367G1098' => 'smo', 'Solyc01g009920.3' => 'sly', 'Solyc01g099300.3' => 'sly', 'Solyc02g084700.3' => 'sly', 'Solyc03g097520.3' => 'sly', 'Solyc06g071580.3' => 'sly', 'Solyc10g081760.3' => 'sly', 'Sopen01g005480' => 'spe', 'Sopen01g042850' => 'spe', 'Sopen02g029370' => 'spe', 'Sopen03g028280' => 'spe', 'Sopen06g027870' => 'spe', 'Sopen10g032270' => 'spe', 'Sp5g18180' => 'spa', 'Sp6g12880' => 'spa', 'Sp6g30850' => 'spa', 'Sp7g22960' => 'spa', 'Sp7g34010' => 'spa', 'SpUn1326_0010' => 'spa', 'TAR371G0242' => 'tar', 'TAR622G0638' => 'tar', 'TAR628G1548' => 'tar', 'TAR629G1079' => 'tar', 'TAR629G3413' => 'tar', 'THA.LOC104804249' => 'tha', 'THA.LOC104808315' => 'tha', 'THA.LOC104809238' => 'tha', 'THA.LOC104825484' => 'tha', 'Thecc.01G025500' => 'tca', 'Thecc.03G015800' => 'tca', 'Thecc.03G018000' => 'tca', 'Thecc.03G134800' => 'tca', 'Thecc.04G014700' => 'tca', 'Thhalv10006991m.g' => 'esa', 'Thhalv10012707m.g' => 'esa', 'Thhalv10015739m.g' => 'esa', 'Thhalv10024553m.g' => 'esa', 'Thhalv10024673m.g' => 'esa', 'Thhalv10029187m.g' => 'esa', 'TPR.G12971' => 'tpr', 'TPR.G29396' => 'tpr', 'TPR.G33376' => 'tpr', 'TPR.G35508' => 'tpr', 'TPR.G35516' => 'tpr', 'TPR.G37317' => 'tpr', 'TPR.G37389' => 'tpr', 'TPR.G37523' => 'tpr', 'TPR.G559' => 'tpr', 'TWI14G0070' => 'twi', 'TWI14G0729' => 'twi', 'TWI18G0596' => 'twi', 'TWI39G0780' => 'twi', 'TWI39G0850' => 'twi', 'TWI73G1052' => 'twi', 'unitig_52.g17485' => 'ugi', 'unitig_61.g26355' => 'ugi', 'vmacro01040' => 'vma', 'vmacro16731' => 'vma', 'vmacro18270' => 'vma', 'vmacro19142' => 'vma', 'vmacro19407' => 'vma', 'vmacro19408' => 'vma', 'vmacro21899' => 'vma', 'vmacro21900' => 'vma', 'vmacro21901' => 'vma', 'VMungo0251G0490' => 'vmu', 'VMungo0251G1748' => 'vmu', 'VMungo1309G0421' => 'vmu', 'Zm00001eb086500' => 'zma', 'Zm00001eb150680' => 'zma', 'Zm00001eb162330' => 'zma', 'Zm00001eb203130' => 'zma', 'Zm00001eb369480' => 'zma', 'Zm00001eb382340' => 'zma', 'Zm00001eb416360' => 'zma' ) $gf_id = 'HOM05D000902' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000902' ) $data_identifier = 'HOM05D000902' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 13, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 10, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 6, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 9, 'hma' => (int) 12, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 4, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 6, 'ppa' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 6, 'rch' => (int) 9, 'rsi' => (int) 9, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 12, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 3, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416360' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000902', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '663', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02470' => 'bna', 'A01p16260' => 'bna', 'A02p01680' => 'bna', 'A03p16600' => 'bna', 'A03p55660' => 'bna', 'A03p64160' => 'bna', 'A03p64170' => 'bna', 'A08p31900' => 'bna', 'A09p59530' => 'bna', 'A10p08230' => 'bna', 'A10p25090' => 'bna', 'Aa31LG3G7100' => 'aar', 'Aa31LG3G7110' => 'aar', 'Aa31LG6G13160' => 'aar', 'Aa31LG7G10770' => 'aar', 'Aa31LG7G3830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2723' => 'aag', 'Actinidia08045' => 'ach', 'Actinidia08888' => 'ach', 'Actinidia18333' => 'ach', 'Actinidia19334' => 'ach', 'Actinidia25552' => 'ach', 'Actinidia26089' => 'ach', 'Actinidia30615' => 'ach', 'Actinidia30616' => 'ach', 'Actinidia33083' => 'ach', 'Actinidia35762' => 'ach', 'Ah.02g110620' => 'amhyb', 'Ah.11g046390' => 'amhyb', 'AL1G31670' => 'aly', 'AL6G23730' => 'aly', 'AL7G14740' => 'aly', 'AL7G14750' => 'aly', 'AL7G14760' => 'aly', 'AL7G28220' => 'aly', 'AL8G24940' => 'aly', 'Aqoxy3G01665' => 'aox', 'Aqoxy3G02853' => 'aox', 'Aqoxy5G01513' => 'aox', 'Aqoxy5G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8SKA4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ75LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKDA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0LJZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7REX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZP4YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWX7I5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2QKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS0L9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPCD8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q161UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC7XCF' => 'arhy', 'AT1G19100' => 'ath', 'AT4G24970' => 'ath', 'AT4G36270' => 'ath', 'AT4G36280' => 'ath', 'AT4G36290' => 'ath', 'AT5G13130' => 'ath', 'AT5G50780' => 'ath', 'ATR0582G266' => 'atr', 'ATR0661G195' => 'atr', 'ATR1152G031' => 'atr', 'Atru.chr11.2382' => 'acertr', 'Atru.chr12.2337' => 'acertr', 'Atru.chr3.744' => 'acertr', 'Atru.chr6.1870' => 'acertr', 'Atru.chr9.2515' => 'acertr', 'AUR62004120' => 'cqu', 'AUR62005667' => 'cqu', 'AUR62007634' => 'cqu', 'AUR62008186' => 'cqu', 'AUR62008187' => 'cqu', 'AUR62008188' => 'cqu', 'AUR62027954' => 'cqu', 'AUR62028766' => 'cqu', 'AUR62028767' => 'cqu', 'AUR62028768' => 'cqu', 'AUR62028886' => 'cqu', 'AUR62029563' => 'cqu', 'AUR62038832' => 'cqu', 'BcaB01g04149' => 'bca', 'BcaB03g12940' => 'bca', 'BcaB03g13090' => 'bca', 'BcaB03g14466' => 'bca', 'BcaB05g24035' => 'bca', 'BcaC01g06050' => 'bca', 'BcaC04g19148' => 'bca', 'BcaC04g20761' => 'bca', 'BcaC06g32845' => 'bca', 'BcaC07g41274' => 'bca', 'BcaC09g50827' => 'bca', 'BcaNung00741' => 'bca', 'BcaNung00742' => 'bca', 'BcaNung01859' => 'bca', 'BcaNung03985' => 'bca', 'BcaNung03989' => 'bca', 'BcaNung05661' => 'bca', 'BolC1t00257H' => 'bol', 'BolC1t01956H' => 'bol', 'BolC2t06534H' => 'bol', 'BolC3t14334H' => 'bol', 'BolC5t30451H' => 'bol', 'BolC7t45880H' => 'bol', 'BolC7t46586H' => 'bol', 'BolC8t49301H' => 'bol', 'BolC8t51837H' => 'bol', 'BolC9t56822H' => 'bol', 'BolC9t59235H' => 'bol', 'BraA01t00234Z' => 'bra', 'BraA01t01563Z' => 'bra', 'BraA02t05147Z' => 'bra', 'BraA03t10947Z' => 'bra', 'BraA03t14633Z' => 'bra', 'BraA08t35112Z' => 'bra', 'BraA09t41330Z' => 'bra', 'BraA10t44570Z' => 'bra', 'C01p02670' => 'bna', 'C01p20260' => 'bna', 'C02p05890' => 'bna', 'C03p19530' => 'bna', 'C05p17470' => 'bna', 'C07p53900' => 'bna', 'C07p61630' => 'bna', 'C08p16800' => 'bna', 'C08p42810' => 'bna', 'C09p39480' => 'bna', 'C09p63980' => 'bna', 'CAN.G1001.7' => 'can', 'CAN.G1034.55' => 'can', 'CAN.G143.7' => 'can', 'CAN.G3340.1' => 'can', 'CAN.G358.19' => 'can', 'CAN.G373.2' => 'can', 'CAN.G674.16' => 'can', 'CAN.G674.17' => 'can', 'CAN.G674.18' => 'can', 'CAN.G732.2' => 'can', 'CAN.G732.3' => 'can', 'CAN.G993.39' => 'can', 'CANSAT01G2052' => 'cansat', 'CANSAT80G0070' => 'cansat', 'CANSAT80G0483' => 'cansat', 'CANSAT80G0625' => 'cansat', 'CARHR019690' => 'chi', 'CARHR080280' => 'chi', 'CARHR152750' => 'chi', 'CARHR152760' => 'chi', 'CARHR152770' => 'chi', 'CARHR200340' => 'chi', 'CARHR232370' => 'chi', 'CARHR244670' => 'chi', 'CARHR244680' => 'chi', 'CARHR257520' => 'chi', 'Carub.0001s1872' => 'cru', 'Carub.0006s1130' => 'cru', 'Carub.0007s0396' => 'cru', 'Carub.0007s0397' => 'cru', 'Carub.0007s1608' => 'cru', 'Carub.0008s1068' => 'cru', 'Carub.0008s1077' => 'cru', 'Ca_16158_v3' => 'car', 'Ca_17571_v3' => 'car', 'Ca_21936_v3' => 'car', 'Ca_22350_v3' => 'car', 'CBR_g22445' => 'cbr', 'CBR_g26290' => 'cbr', 'Cc04_g09610' => 'ccan', 'Cc04_g12280' => 'ccan', 'Cc07_g10230' => 'ccan', 'CDE02G0093' => 'cde', 'CDE02G0701' => 'cde', 'CDE04G1050' => 'cde', 'CDE05G1833' => 'cde', 'CDE05G3058' => 'cde', 'CDE05G3380' => 'cde', 'CDE06G0536' => 'cde', 'Cfa006923' => 'cfa', 'Cfa009402' => 'cfa', 'Cfa018751' => 'cfa', 'Cfa019164' => 'cfa', 'Cfa022935' => 'cfa', 'Ciclev10019081m.g' => 'ccl', 'Ciclev10025076m.g' => 'ccl', 'Ciclev10030712m.g' => 'ccl', 'Ciclev10033760m.g' => 'ccl', 'CiPaw.05G105600' => 'cil', 'CiPaw.08G136700' => 'cil', 'CiPaw.11G003900' => 'cil', 'CiPaw.11G023700' => 'cil', 'CiPaw.12G003700' => 'cil', 'ClCG06G017100' => 'cla', 'ClCG06G018110' => 'cla', 'ClCG07G008800' => 'cla', 'ClCG07G015330' => 'cla', 'COL.COLO4_13698' => 'col', 'COL.COLO4_16659' => 'col', 'COL.COLO4_21986' => 'col', 'COL.COLO4_24049' => 'col', 'COL.COLO4_29061' => 'col', 'COL.COLO4_29075' => 'col', 'COL.COLO4_30094' => 'col', 'Cpa.g.c33689' => 'cpa', 'Cpa.g.sc108.39' => 'cpa', 'Cpa.g.sc108.41' => 'cpa', 'Cpa.g.sc1163.1' => 'cpa', 'Cpa.g.sc4.155' => 'cpa', 'Cpa.g.sc6.194' => 'cpa', 'CsaV3_1G000340' => 'csa', 'CsaV3_1G001400' => 'csa', 'CsaV3_4G002220' => 'csa', 'CsaV3_4G005370' => 'csa', 'CSS0007487' => 'camsi', 'CSS0008066' => 'camsi', 'CSS0009120' => 'camsi', 'CSS0015512' => 'camsi', 'CSS0022409' => 'camsi', 'CSS0025358' => 'camsi', 'CSS0044547' => 'camsi', 'DCAR_013057' => 'dca', 'DCAR_015058' => 'dca', 'DCAR_016027' => 'dca', 'DCAR_017327' => 'dca', 'DCAR_020743' => 'dca', 'DCAR_026157' => 'dca', 'DCAR_032339' => 'dca', 'DCAR_032340' => 'dca', 'Dinv11200' => 'din', 'Dinv11201' => 'din', 'Dinv20631' => 'din', 'Dinv23182' => 'din', 'Dinv33466' => 'din', 'Dinv33583' => 'din', 'Dinv38565' => 'din', 'Duzib068G0200' => 'dzi', 'Duzib147G0132' => 'dzi', 'Duzib147G0635' => 'dzi', 'Duzib205G1670' => 'dzi', 'Duzib251G0606' => 'dzi', 'ECA232G3336' => 'eca', 'ECA232G3763' => 'eca', 'ECA232G4845' => 'eca', 'ECA234G1607' => 'eca', 'ECA246G0932' => 'eca', 'ECA247G0781' => 'eca', 'ECA247G1932' => 'eca', 'ECA247G2079' => 'eca', 'ECA247G3338' => 'eca', 'ECA247G4115' => 'eca', 'EL10Ac3g06552' => 'bvu', 'EL10Ac5g10721' => 'bvu', 'EL10Ac5g10722' => 'bvu', 'EL10Ac5g10723' => 'bvu', 'EL10Ac5g11361' => 'bvu', 'EL10Ac6g13553' => 'bvu', 'EL10As8g23872' => 'bvu', 'Eucgr.B00250' => 'egr', 'Eucgr.B00251' => 'egr', 'Eucgr.B03533' => 'egr', 'Eucgr.I02381' => 'egr', 'Eucgr.K02700' => 'egr', 'FAN02G0174' => 'fan', 'FAN02G3146' => 'fan', 'FAN04G1672' => 'fan', 'FAN04G2273' => 'fan', 'FAN05G2791' => 'fan', 'FAN05G4035' => 'fan', 'FAN07G0834' => 'fan', 'FAN08G1198' => 'fan', 'FAN09G4182' => 'fan', 'FAN12G0496' => 'fan', 'FAN13G1027' => 'fan', 'FAN13G2951' => 'fan', 'FAN14G0705' => 'fan', 'FAN14G0720' => 'fan', 'FAN17G0201' => 'fan', 'FAN17G2665' => 'fan', 'FAN18G1456' => 'fan', 'FAN18G1525' => 'fan', 'FAN18G3500' => 'fan', 'FAN28G2670' => 'fan', 'FvH4_1g12391' => 'fve', 'FvH4_4g23220' => 'fve', 'FvH4_5g08810' => 'fve', 'FvH4_5g28960' => 'fve', 'FvH4_6g42820' => 'fve', 'FvH4_6g51110' => 'fve', 'Glyma.02G051802' => 'gma', 'Glyma.04G185300' => 'gma', 'Glyma.05G202900' => 'gma', 'Glyma.08G010300' => 'gma', 'Glyma.16G131900' => 'gma', 'Glyma.17G087900' => 'gma', 'Gohir.A07G048600' => 'ghi', 'Gohir.A11G179000' => 'ghi', 'Gohir.A12G140900' => 'ghi', 'Gohir.A12G140950' => 'ghi', 'Gohir.A12G191700' => 'ghi', 'Gohir.A13G086300' => 'ghi', 'Gohir.D07G052900' => 'ghi', 'Gohir.D11G186600' => 'ghi', 'Gohir.D12G145575' => 'ghi', 'Gohir.D12G145650' => 'ghi', 'Gohir.D12G145725' => 'ghi', 'Gohir.D12G194050' => 'ghi', 'Gohir.D13G091800' => 'ghi', 'Gorai.001G055900' => 'gra', 'Gorai.007G198400' => 'gra', 'Gorai.008G157000' => 'gra', 'Gorai.008G157100' => 'gra', 'Gorai.008G208700' => 'gra', 'Gorai.010G138700' => 'gra', 'GSVIVG01000977001' => 'vvi', 'GSVIVG01007708001' => 'vvi', 'GSVIVG01008587001' => 'vvi', 'GSVIVG01018849001' => 'vvi', 'GSVIVG01032432001' => 'vvi', 'HanXRQChr02g0034131' => 'han', 'HanXRQChr02g0035981' => 'han', 'HanXRQChr02g0035991' => 'han', 'HanXRQChr05g0155611' => 'han', 'HanXRQChr05g0155621' => 'han', 'HanXRQChr08g0236501' => 'han', 'HanXRQChr09g0261321' => 'han', 'HanXRQChr09g0272081' => 'han', 'HanXRQChr10g0310741' => 'han', 'HanXRQChr11g0325591' => 'han', 'HanXRQChr12g0385691' => 'han', 'HanXRQChr13g0387801' => 'han', 'HanXRQChr15g0463011' => 'han', 'Haze_03826' => 'cav', 'Haze_03827' => 'cav', 'Haze_07183' => 'cav', 'Haze_07537' => 'cav', 'Haze_07539' => 'cav', 'Haze_12461' => 'cav', 'Haze_16115' => 'cav', 'Haze_16808' => 'cav', 'Haze_18531' => 'cav', 'Hma1.2p1_0046F.1_g026700' => 'hma', 'Hma1.2p1_0046F.1_g026710' => 'hma', 'Hma1.2p1_0168F.1_g074340' => 'hma', 'Hma1.2p1_0266F.1_g107030' => 'hma', 'Hma1.2p1_0266F.1_g107060' => 'hma', 'Hma1.2p1_0275F.1_g110510' => 'hma', 'Hma1.2p1_0592F.1_g185490' => 'hma', 'Hma1.2p1_0592F.1_g185500' => 'hma', 'Hma1.2p1_0592F.1_g185510' => 'hma', 'Hma1.2p1_0592F.1_g185520' => 'hma', 'Hma1.2p1_0592F.1_g185530' => 'hma', 'Hma1.2p1_0818F.1_g223450' => 'hma', 'HPP92_009708' => 'vpl', 'HPP92_009793' => 'vpl', 'HPP92_009796' => 'vpl', 'HPP92_009797' => 'vpl', 'HPP92_014940' => 'vpl', 'HPP92_014988' => 'vpl', 'Hund02463' => 'sun', 'Hund02760' => 'sun', 'Hund05071' => 'sun', 'Hund10108' => 'sun', 'Hund11204' => 'sun', 'Hund14016' => 'sun', 'Hund16464' => 'sun', 'Lalb_Chr09g0333391' => 'lal', 'Lalb_Chr11g0070461' => 'lal', 'Lalb_Chr12g0201671' => 'lal', 'Lalb_Chr13g0297161' => 'lal', 'Lj1g0002823' => 'lja', 'Lj3C1074T6' => 'lonja', 'Lj4A212T28' => 'lonja', 'Lj4g0005516' => 'lja', 'Lj4g0013705' => 'lja', 'Lj4g0027865' => 'lja', 'Lj5C92G16' => 'lonja', 'Lj5C92T12' => 'lonja', 'Lj7C596T3' => 'lonja', 'Lj9A446G59' => 'lonja', 'Lj9A482G21' => 'lonja', 'Lsat_1_v5_gn_1_28261' => 'lsa', 'Lsat_1_v5_gn_1_28281' => 'lsa', 'Lsat_1_v5_gn_1_32721' => 'lsa', 'Lsat_1_v5_gn_4_151760' => 'lsa', 'Lsat_1_v5_gn_4_2120' => 'lsa', 'Lsat_1_v5_gn_4_75761' => 'lsa', 'Lsat_1_v5_gn_5_10920' => 'lsa', 'Manes.02G099900' => 'mes', 'Manes.11G096200' => 'mes', 'Manes.12G007200' => 'mes', 'Manes.14G048300' => 'mes', 'Manes.17G114700' => 'mes', 'Mapoly0002s0070' => 'mpo', 'Mapoly0029s0099' => 'mpo', 'MBI07_g24742_MAGBIO' => 'mbi', 'MBI10_g27988_MAGBIO' => 'mbi', 'MBI11_g13057_MAGBIO' => 'mbi', 'MD02G1137200' => 'mdo', 'MD06G1137200' => 'mdo', 'MD07G1122300' => 'mdo', 'MD09G1078200' => 'mdo', 'MD13G1123700' => 'mdo', 'MD14G1151900' => 'mdo', 'MD17G1030900' => 'mdo', 'MD17G1068200' => 'mdo', 'MD17G1068600' => 'mdo', 'Medtr3g077540' => 'mtr', 'Medtr4g105530' => 'mtr', 'Medtr8g076580' => 'mtr', 'Medtr8g076590' => 'mtr', 'Medtr8g096410' => 'mtr', 'MELO3C016411.2' => 'cme', 'MELO3C017780.2' => 'cme', 'MELO3C022560.2' => 'cme', 'MELO3C026187.2' => 'cme', 'MELO3C026286.2' => 'cme', 'MELO3C032854.2' => 'cme', 'Migut.H02495' => 'egut', 'Migut.I00561' => 'egut', 'Migut.K01015' => 'egut', 'Migut.K01016' => 'egut', 'Migut.L00743' => 'egut', 'Migut.L00744' => 'egut', 'Migut.L00746' => 'egut', 'Migut.L00798' => 'egut', 'Migut.L00799' => 'egut', 'Migut.N02096' => 'egut', 'MSTRG.11259' => 'ama', 'MSTRG.23142' => 'ama', 'MSTRG.2499' => 'ama', 'Nitab4.5_0000003g0730' => 'nta', 'Nitab4.5_0000137g0020' => 'nta', 'Nitab4.5_0000721g0210' => 'nta', 'Nitab4.5_0000723g0050' => 'nta', 'Nitab4.5_0000913g0070' => 'nta', 'Nitab4.5_0001332g0040' => 'nta', 'Nitab4.5_0001771g0050' => 'nta', 'Nitab4.5_0001918g0050' => 'nta', 'Nitab4.5_0002686g0030' => 'nta', 'Nitab4.5_0003156g0020' => 'nta', 'Nitab4.5_0003383g0040' => 'nta', 'Nitab4.5_0003918g0010' => 'nta', 'Nitab4.5_0006760g0010' => 'nta', 'Nn1g05981' => 'nnu', 'Nn1g06288' => 'nnu', 'Nn3g16371' => 'nnu', 'Nn3g16786' => 'nnu', 'Nn4g22232' => 'nnu', 'Oeu005144.1' => 'oeu', 'Oeu005145.1' => 'oeu', 'Oeu011348.1' => 'oeu', 'Oeu016415.1' => 'oeu', 'Oeu023501.1' => 'oeu', 'Oeu044473.1' => 'oeu', 'Oeu048892.2' => 'oeu', 'Os01g0549200' => 'osa', 'Os02g0469300' => 'osa', 'Os04g0311100' => 'osa', 'Os06g0474900' => 'osa', 'Os10g0181700' => 'osa', 'Os11g0454800' => 'osa', 'Peaxi162Scf00037g00714' => 'pax', 'Peaxi162Scf00084g01217' => 'pax', 'Peaxi162Scf00257g00217' => 'pax', 'Peaxi162Scf00516g00215' => 'pax', 'Peaxi162Scf00689g00123' => 'pax', 'PGR044G2719' => 'pgr', 'PGR083G1360' => 'pgr', 'PGR102G2849' => 'pgr', 'PGR119G2534' => 'pgr', 'PGSC0003DMG400003538' => 'stu', 'PGSC0003DMG400028138' => 'stu', 'PGSC0003DMG400031732' => 'stu', 'PGSC0003DMG400038165' => 'stu', 'Phvul.002G284600' => 'pvu', 'Phvul.003G258200' => 'pvu', 'Phvul.009G176500' => 'pvu', 'Potri.003G167201' => 'ptr', 'Potri.005G118400' => 'ptr', 'Potri.012G089000' => 'ptr', 'Potri.012G102800' => 'ptr', 'Potri.015G079400' => 'ptr', 'Potri.015G100900' => 'ptr', 'Pp3c14_9810' => 'ppa', 'Pp3c15_10450' => 'ppa', 'Pp3c20_19150' => 'ppa', 'Pp3c23_12740' => 'ppa', 'Pp3c23_6310' => 'ppa', 'Pp3c24_3720' => 'ppa', 'Pp3c27_2580' => 'ppa', 'Pp3c9_8990' => 'ppa', 'PRCOL_00002854' => 'pco', 'Prupe.1G221200' => 'ppe', 'Prupe.3G289000' => 'ppe', 'Prupe.5G147000' => 'ppe', 'Prupe.6G157300' => 'ppe', 'Prupe.7G163400' => 'ppe', 'Psat0s2177g0040' => 'psa', 'Psat3g174760' => 'psa', 'Psat3g192160' => 'psa', 'Psat4g058520' => 'psa', 'Psat4g096840' => 'psa', 'Psat7g037320' => 'psa', 'PSO017G1274' => 'pso', 'PSO017G5166' => 'pso', 'PSO063G4558' => 'pso', 'PSO170G4458' => 'pso', 'PSO170G5005' => 'pso', 'PSO210G6156' => 'pso', 'PSO210G6635' => 'pso', 'PSO210G7397' => 'pso', 'PSO210G7700' => 'pso', 'PSO455G0035' => 'pso', 'PSO455G0180' => 'pso', 'PSO478G4515' => 'pso', 'PSO832G1305' => 'pso', 'PSO832G3489' => 'pso', 'QL02p075247' => 'qlo', 'QL03p051148' => 'qlo', 'QL05p010313' => 'qlo', 'QL06p034627' => 'qlo', 'QL10p001889' => 'qlo', 'QL10p010846' => 'qlo', 'RcHm_v2.0_Chr1g0350621' => 'rch', 'RcHm_v2.0_Chr1g0350641' => 'rch', 'RcHm_v2.0_Chr2g0092891' => 'rch', 'RcHm_v2.0_Chr2g0100251' => 'rch', 'RcHm_v2.0_Chr2g0158661' => 'rch', 'RcHm_v2.0_Chr2g0172741' => 'rch', 'RcHm_v2.0_Chr4g0429571' => 'rch', 'RcHm_v2.0_Chr5g0042471' => 'rch', 'RcHm_v2.0_Chr7g0189451' => 'rch', 'Rhsim08G0052000' => 'rsi', 'Rhsim08G0174400' => 'rsi', 'Rhsim08G0193200' => 'rsi', 'Rhsim10G0214800' => 'rsi', 'Rhsim10G0214900' => 'rsi', 'Rhsim10G0215000' => 'rsi', 'Rhsim12G0022900' => 'rsi', 'Rhsim12G0177500' => 'rsi', 'Rhsim12G0177700' => 'rsi', 'Sabra03G0122600' => 'sbr', 'Sabra05G0097400' => 'sbr', 'Sabra12G0064100' => 'sbr', 'Sabra15G0121300' => 'sbr', 'SalBow2G0642' => 'sbo', 'SalBow5G2667' => 'sbo', 'SalBow5G4873' => 'sbo', 'SalBow8G2395' => 'sbo', 'Sc03g0003290' => 'sci', 'Sc10g0010130' => 'sci', 'Sc22g0003650' => 'sci', 'Sed0001603' => 'sed', 'Sed0004259' => 'sed', 'Sed0006789' => 'sed', 'Sed0011838' => 'sed', 'Sed0012964' => 'sed', 'Sed0016383' => 'sed', 'Sed0019010' => 'sed', 'Sed0020188' => 'sed', 'SEGI_04702' => 'sgi', 'SEGI_17231' => 'sgi', 'SEGI_18877' => 'sgi', 'SEGI_25196' => 'sgi', 'SEGI_25515' => 'sgi', 'SEGI_28445' => 'sgi', 'SEGI_37452' => 'sgi', 'SGA_v2.0_scaffold188G40336' => 'sas', 'SGA_v2.0_scaffold228G43247' => 'sas', 'SGA_v2.0_scaffold280G46853' => 'sas', 'SGA_v2.0_scaffold34G13808' => 'sas', 'SGA_v2.0_scaffold40G15576' => 'sas', 'SGA_v2.0_scaffold611G53188' => 'sas', 'SGA_v2.0_scaffold78G25461' => 'sas', 'SGA_v2.0_scaffold90G27888' => 'sas', 'SHI08601' => 'shi', 'SHI08606' => 'shi', 'SHI17117' => 'shi', 'SHI17119' => 'shi', 'SMO118G0201' => 'smo', 'SMO169G0247' => 'smo', 'SMO176G0006' => 'smo', 'SMO176G0015' => 'smo', 'SMO202G0006' => 'smo', 'SMO240G0050' => 'smo', 'SMO286G0009' => 'smo', 'SMO338G0033' => 'smo', 'SMO356G0533' => 'smo', 'SMO364G0382' => 'smo', 'SMO367G0166' => 'smo', 'SMO367G1098' => 'smo', 'Solyc01g009920.3' => 'sly', 'Solyc01g099300.3' => 'sly', 'Solyc02g084700.3' => 'sly', 'Solyc03g097520.3' => 'sly', 'Solyc06g071580.3' => 'sly', 'Solyc10g081760.3' => 'sly', 'Sopen01g005480' => 'spe', 'Sopen01g042850' => 'spe', 'Sopen02g029370' => 'spe', 'Sopen03g028280' => 'spe', 'Sopen06g027870' => 'spe', 'Sopen10g032270' => 'spe', 'Sp5g18180' => 'spa', 'Sp6g12880' => 'spa', 'Sp6g30850' => 'spa', 'Sp7g22960' => 'spa', 'Sp7g34010' => 'spa', 'SpUn1326_0010' => 'spa', 'TAR371G0242' => 'tar', 'TAR622G0638' => 'tar', 'TAR628G1548' => 'tar', 'TAR629G1079' => 'tar', 'TAR629G3413' => 'tar', 'THA.LOC104804249' => 'tha', 'THA.LOC104808315' => 'tha', 'THA.LOC104809238' => 'tha', 'THA.LOC104825484' => 'tha', 'Thecc.01G025500' => 'tca', 'Thecc.03G015800' => 'tca', 'Thecc.03G018000' => 'tca', 'Thecc.03G134800' => 'tca', 'Thecc.04G014700' => 'tca', 'Thhalv10006991m.g' => 'esa', 'Thhalv10012707m.g' => 'esa', 'Thhalv10015739m.g' => 'esa', 'Thhalv10024553m.g' => 'esa', 'Thhalv10024673m.g' => 'esa', 'Thhalv10029187m.g' => 'esa', 'TPR.G12971' => 'tpr', 'TPR.G29396' => 'tpr', 'TPR.G33376' => 'tpr', 'TPR.G35508' => 'tpr', 'TPR.G35516' => 'tpr', 'TPR.G37317' => 'tpr', 'TPR.G37389' => 'tpr', 'TPR.G37523' => 'tpr', 'TPR.G559' => 'tpr', 'TWI14G0070' => 'twi', 'TWI14G0729' => 'twi', 'TWI18G0596' => 'twi', 'TWI39G0780' => 'twi', 'TWI39G0850' => 'twi', 'TWI73G1052' => 'twi', 'unitig_52.g17485' => 'ugi', 'unitig_61.g26355' => 'ugi', 'vmacro01040' => 'vma', 'vmacro16731' => 'vma', 'vmacro18270' => 'vma', 'vmacro19142' => 'vma', 'vmacro19407' => 'vma', 'vmacro19408' => 'vma', 'vmacro21899' => 'vma', 'vmacro21900' => 'vma', 'vmacro21901' => 'vma', 'VMungo0251G0490' => 'vmu', 'VMungo0251G1748' => 'vmu', 'VMungo1309G0421' => 'vmu', 'Zm00001eb086500' => 'zma', 'Zm00001eb150680' => 'zma', 'Zm00001eb162330' => 'zma', 'Zm00001eb203130' => 'zma', 'Zm00001eb369480' => 'zma', 'Zm00001eb382340' => 'zma', 'Zm00001eb416360' => 'zma' ), 'gf_id' => 'HOM05D000902', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000902' ), 'data_identifier' => 'HOM05D000902', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000902', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '663', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02470' => 'bna', 'A01p16260' => 'bna', 'A02p01680' => 'bna', 'A03p16600' => 'bna', 'A03p55660' => 'bna', 'A03p64160' => 'bna', 'A03p64170' => 'bna', 'A08p31900' => 'bna', 'A09p59530' => 'bna', 'A10p08230' => 'bna', 'A10p25090' => 'bna', 'Aa31LG3G7100' => 'aar', 'Aa31LG3G7110' => 'aar', 'Aa31LG6G13160' => 'aar', 'Aa31LG7G10770' => 'aar', 'Aa31LG7G3830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2723' => 'aag', 'Actinidia08045' => 'ach', 'Actinidia08888' => 'ach', 'Actinidia18333' => 'ach', 'Actinidia19334' => 'ach', 'Actinidia25552' => 'ach', 'Actinidia26089' => 'ach', 'Actinidia30615' => 'ach', 'Actinidia30616' => 'ach', 'Actinidia33083' => 'ach', 'Actinidia35762' => 'ach', 'Ah.02g110620' => 'amhyb', 'Ah.11g046390' => 'amhyb', 'AL1G31670' => 'aly', 'AL6G23730' => 'aly', 'AL7G14740' => 'aly', 'AL7G14750' => 'aly', 'AL7G14760' => 'aly', 'AL7G28220' => 'aly', 'AL8G24940' => 'aly', 'Aqoxy3G01665' => 'aox', 'Aqoxy3G02853' => 'aox', 'Aqoxy5G01513' => 'aox', 'Aqoxy5G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8SKA4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ75LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKDA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0LJZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7REX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZP4YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWX7I5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2QKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS0L9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPCD8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q161UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC7XCF' => 'arhy', 'AT1G19100' => 'ath', 'AT4G24970' => 'ath', 'AT4G36270' => 'ath', 'AT4G36280' => 'ath', 'AT4G36290' => 'ath', 'AT5G13130' => 'ath', 'AT5G50780' => 'ath', 'ATR0582G266' => 'atr', 'ATR0661G195' => 'atr', 'ATR1152G031' => 'atr', 'Atru.chr11.2382' => 'acertr', 'Atru.chr12.2337' => 'acertr', 'Atru.chr3.744' => 'acertr', 'Atru.chr6.1870' => 'acertr', 'Atru.chr9.2515' => 'acertr', 'AUR62004120' => 'cqu', 'AUR62005667' => 'cqu', 'AUR62007634' => 'cqu', 'AUR62008186' => 'cqu', 'AUR62008187' => 'cqu', 'AUR62008188' => 'cqu', 'AUR62027954' => 'cqu', 'AUR62028766' => 'cqu', 'AUR62028767' => 'cqu', 'AUR62028768' => 'cqu', 'AUR62028886' => 'cqu', 'AUR62029563' => 'cqu', 'AUR62038832' => 'cqu', 'BcaB01g04149' => 'bca', 'BcaB03g12940' => 'bca', 'BcaB03g13090' => 'bca', 'BcaB03g14466' => 'bca', 'BcaB05g24035' => 'bca', 'BcaC01g06050' => 'bca', 'BcaC04g19148' => 'bca', 'BcaC04g20761' => 'bca', 'BcaC06g32845' => 'bca', 'BcaC07g41274' => 'bca', 'BcaC09g50827' => 'bca', 'BcaNung00741' => 'bca', 'BcaNung00742' => 'bca', 'BcaNung01859' => 'bca', 'BcaNung03985' => 'bca', 'BcaNung03989' => 'bca', 'BcaNung05661' => 'bca', 'BolC1t00257H' => 'bol', 'BolC1t01956H' => 'bol', 'BolC2t06534H' => 'bol', 'BolC3t14334H' => 'bol', 'BolC5t30451H' => 'bol', 'BolC7t45880H' => 'bol', 'BolC7t46586H' => 'bol', 'BolC8t49301H' => 'bol', 'BolC8t51837H' => 'bol', 'BolC9t56822H' => 'bol', 'BolC9t59235H' => 'bol', 'BraA01t00234Z' => 'bra', 'BraA01t01563Z' => 'bra', 'BraA02t05147Z' => 'bra', 'BraA03t10947Z' => 'bra', 'BraA03t14633Z' => 'bra', 'BraA08t35112Z' => 'bra', 'BraA09t41330Z' => 'bra', 'BraA10t44570Z' => 'bra', 'C01p02670' => 'bna', 'C01p20260' => 'bna', 'C02p05890' => 'bna', 'C03p19530' => 'bna', 'C05p17470' => 'bna', 'C07p53900' => 'bna', 'C07p61630' => 'bna', 'C08p16800' => 'bna', 'C08p42810' => 'bna', 'C09p39480' => 'bna', 'C09p63980' => 'bna', 'CAN.G1001.7' => 'can', 'CAN.G1034.55' => 'can', 'CAN.G143.7' => 'can', 'CAN.G3340.1' => 'can', 'CAN.G358.19' => 'can', 'CAN.G373.2' => 'can', 'CAN.G674.16' => 'can', 'CAN.G674.17' => 'can', 'CAN.G674.18' => 'can', 'CAN.G732.2' => 'can', 'CAN.G732.3' => 'can', 'CAN.G993.39' => 'can', 'CANSAT01G2052' => 'cansat', 'CANSAT80G0070' => 'cansat', 'CANSAT80G0483' => 'cansat', 'CANSAT80G0625' => 'cansat', 'CARHR019690' => 'chi', 'CARHR080280' => 'chi', 'CARHR152750' => 'chi', 'CARHR152760' => 'chi', 'CARHR152770' => 'chi', 'CARHR200340' => 'chi', 'CARHR232370' => 'chi', 'CARHR244670' => 'chi', 'CARHR244680' => 'chi', 'CARHR257520' => 'chi', 'Carub.0001s1872' => 'cru', 'Carub.0006s1130' => 'cru', 'Carub.0007s0396' => 'cru', 'Carub.0007s0397' => 'cru', 'Carub.0007s1608' => 'cru', 'Carub.0008s1068' => 'cru', 'Carub.0008s1077' => 'cru', 'Ca_16158_v3' => 'car', 'Ca_17571_v3' => 'car', 'Ca_21936_v3' => 'car', 'Ca_22350_v3' => 'car', 'CBR_g22445' => 'cbr', 'CBR_g26290' => 'cbr', 'Cc04_g09610' => 'ccan', 'Cc04_g12280' => 'ccan', 'Cc07_g10230' => 'ccan', 'CDE02G0093' => 'cde', 'CDE02G0701' => 'cde', 'CDE04G1050' => 'cde', 'CDE05G1833' => 'cde', 'CDE05G3058' => 'cde', 'CDE05G3380' => 'cde', 'CDE06G0536' => 'cde', 'Cfa006923' => 'cfa', 'Cfa009402' => 'cfa', 'Cfa018751' => 'cfa', 'Cfa019164' => 'cfa', 'Cfa022935' => 'cfa', 'Ciclev10019081m.g' => 'ccl', 'Ciclev10025076m.g' => 'ccl', 'Ciclev10030712m.g' => 'ccl', 'Ciclev10033760m.g' => 'ccl', 'CiPaw.05G105600' => 'cil', 'CiPaw.08G136700' => 'cil', 'CiPaw.11G003900' => 'cil', 'CiPaw.11G023700' => 'cil', 'CiPaw.12G003700' => 'cil', 'ClCG06G017100' => 'cla', 'ClCG06G018110' => 'cla', 'ClCG07G008800' => 'cla', 'ClCG07G015330' => 'cla', 'COL.COLO4_13698' => 'col', 'COL.COLO4_16659' => 'col', 'COL.COLO4_21986' => 'col', 'COL.COLO4_24049' => 'col', 'COL.COLO4_29061' => 'col', 'COL.COLO4_29075' => 'col', 'COL.COLO4_30094' => 'col', 'Cpa.g.c33689' => 'cpa', 'Cpa.g.sc108.39' => 'cpa', 'Cpa.g.sc108.41' => 'cpa', 'Cpa.g.sc1163.1' => 'cpa', 'Cpa.g.sc4.155' => 'cpa', 'Cpa.g.sc6.194' => 'cpa', 'CsaV3_1G000340' => 'csa', 'CsaV3_1G001400' => 'csa', 'CsaV3_4G002220' => 'csa', 'CsaV3_4G005370' => 'csa', 'CSS0007487' => 'camsi', 'CSS0008066' => 'camsi', 'CSS0009120' => 'camsi', 'CSS0015512' => 'camsi', 'CSS0022409' => 'camsi', 'CSS0025358' => 'camsi', 'CSS0044547' => 'camsi', 'DCAR_013057' => 'dca', 'DCAR_015058' => 'dca', 'DCAR_016027' => 'dca', 'DCAR_017327' => 'dca', 'DCAR_020743' => 'dca', 'DCAR_026157' => 'dca', 'DCAR_032339' => 'dca', 'DCAR_032340' => 'dca', 'Dinv11200' => 'din', 'Dinv11201' => 'din', 'Dinv20631' => 'din', 'Dinv23182' => 'din', 'Dinv33466' => 'din', 'Dinv33583' => 'din', 'Dinv38565' => 'din', 'Duzib068G0200' => 'dzi', 'Duzib147G0132' => 'dzi', 'Duzib147G0635' => 'dzi', 'Duzib205G1670' => 'dzi', 'Duzib251G0606' => 'dzi', 'ECA232G3336' => 'eca', 'ECA232G3763' => 'eca', 'ECA232G4845' => 'eca', 'ECA234G1607' => 'eca', 'ECA246G0932' => 'eca', 'ECA247G0781' => 'eca', 'ECA247G1932' => 'eca', 'ECA247G2079' => 'eca', 'ECA247G3338' => 'eca', 'ECA247G4115' => 'eca', 'EL10Ac3g06552' => 'bvu', 'EL10Ac5g10721' => 'bvu', 'EL10Ac5g10722' => 'bvu', 'EL10Ac5g10723' => 'bvu', 'EL10Ac5g11361' => 'bvu', 'EL10Ac6g13553' => 'bvu', 'EL10As8g23872' => 'bvu', 'Eucgr.B00250' => 'egr', 'Eucgr.B00251' => 'egr', 'Eucgr.B03533' => 'egr', 'Eucgr.I02381' => 'egr', 'Eucgr.K02700' => 'egr', 'FAN02G0174' => 'fan', 'FAN02G3146' => 'fan', 'FAN04G1672' => 'fan', 'FAN04G2273' => 'fan', 'FAN05G2791' => 'fan', 'FAN05G4035' => 'fan', 'FAN07G0834' => 'fan', 'FAN08G1198' => 'fan', 'FAN09G4182' => 'fan', 'FAN12G0496' => 'fan', 'FAN13G1027' => 'fan', 'FAN13G2951' => 'fan', 'FAN14G0705' => 'fan', 'FAN14G0720' => 'fan', 'FAN17G0201' => 'fan', 'FAN17G2665' => 'fan', 'FAN18G1456' => 'fan', 'FAN18G1525' => 'fan', 'FAN18G3500' => 'fan', 'FAN28G2670' => 'fan', 'FvH4_1g12391' => 'fve', 'FvH4_4g23220' => 'fve', 'FvH4_5g08810' => 'fve', 'FvH4_5g28960' => 'fve', 'FvH4_6g42820' => 'fve', 'FvH4_6g51110' => 'fve', 'Glyma.02G051802' => 'gma', 'Glyma.04G185300' => 'gma', 'Glyma.05G202900' => 'gma', 'Glyma.08G010300' => 'gma', 'Glyma.16G131900' => 'gma', 'Glyma.17G087900' => 'gma', 'Gohir.A07G048600' => 'ghi', 'Gohir.A11G179000' => 'ghi', 'Gohir.A12G140900' => 'ghi', 'Gohir.A12G140950' => 'ghi', 'Gohir.A12G191700' => 'ghi', 'Gohir.A13G086300' => 'ghi', 'Gohir.D07G052900' => 'ghi', 'Gohir.D11G186600' => 'ghi', 'Gohir.D12G145575' => 'ghi', 'Gohir.D12G145650' => 'ghi', 'Gohir.D12G145725' => 'ghi', 'Gohir.D12G194050' => 'ghi', 'Gohir.D13G091800' => 'ghi', 'Gorai.001G055900' => 'gra', 'Gorai.007G198400' => 'gra', 'Gorai.008G157000' => 'gra', 'Gorai.008G157100' => 'gra', 'Gorai.008G208700' => 'gra', 'Gorai.010G138700' => 'gra', 'GSVIVG01000977001' => 'vvi', 'GSVIVG01007708001' => 'vvi', 'GSVIVG01008587001' => 'vvi', 'GSVIVG01018849001' => 'vvi', 'GSVIVG01032432001' => 'vvi', 'HanXRQChr02g0034131' => 'han', 'HanXRQChr02g0035981' => 'han', 'HanXRQChr02g0035991' => 'han', 'HanXRQChr05g0155611' => 'han', 'HanXRQChr05g0155621' => 'han', 'HanXRQChr08g0236501' => 'han', 'HanXRQChr09g0261321' => 'han', 'HanXRQChr09g0272081' => 'han', 'HanXRQChr10g0310741' => 'han', 'HanXRQChr11g0325591' => 'han', 'HanXRQChr12g0385691' => 'han', 'HanXRQChr13g0387801' => 'han', 'HanXRQChr15g0463011' => 'han', 'Haze_03826' => 'cav', 'Haze_03827' => 'cav', 'Haze_07183' => 'cav', 'Haze_07537' => 'cav', 'Haze_07539' => 'cav', 'Haze_12461' => 'cav', 'Haze_16115' => 'cav', 'Haze_16808' => 'cav', 'Haze_18531' => 'cav', 'Hma1.2p1_0046F.1_g026700' => 'hma', 'Hma1.2p1_0046F.1_g026710' => 'hma', 'Hma1.2p1_0168F.1_g074340' => 'hma', 'Hma1.2p1_0266F.1_g107030' => 'hma', 'Hma1.2p1_0266F.1_g107060' => 'hma', 'Hma1.2p1_0275F.1_g110510' => 'hma', 'Hma1.2p1_0592F.1_g185490' => 'hma', 'Hma1.2p1_0592F.1_g185500' => 'hma', 'Hma1.2p1_0592F.1_g185510' => 'hma', 'Hma1.2p1_0592F.1_g185520' => 'hma', 'Hma1.2p1_0592F.1_g185530' => 'hma', 'Hma1.2p1_0818F.1_g223450' => 'hma', 'HPP92_009708' => 'vpl', 'HPP92_009793' => 'vpl', 'HPP92_009796' => 'vpl', 'HPP92_009797' => 'vpl', 'HPP92_014940' => 'vpl', 'HPP92_014988' => 'vpl', 'Hund02463' => 'sun', 'Hund02760' => 'sun', 'Hund05071' => 'sun', 'Hund10108' => 'sun', 'Hund11204' => 'sun', 'Hund14016' => 'sun', 'Hund16464' => 'sun', 'Lalb_Chr09g0333391' => 'lal', 'Lalb_Chr11g0070461' => 'lal', 'Lalb_Chr12g0201671' => 'lal', 'Lalb_Chr13g0297161' => 'lal', 'Lj1g0002823' => 'lja', 'Lj3C1074T6' => 'lonja', 'Lj4A212T28' => 'lonja', 'Lj4g0005516' => 'lja', 'Lj4g0013705' => 'lja', 'Lj4g0027865' => 'lja', 'Lj5C92G16' => 'lonja', 'Lj5C92T12' => 'lonja', 'Lj7C596T3' => 'lonja', 'Lj9A446G59' => 'lonja', 'Lj9A482G21' => 'lonja', 'Lsat_1_v5_gn_1_28261' => 'lsa', 'Lsat_1_v5_gn_1_28281' => 'lsa', 'Lsat_1_v5_gn_1_32721' => 'lsa', 'Lsat_1_v5_gn_4_151760' => 'lsa', 'Lsat_1_v5_gn_4_2120' => 'lsa', 'Lsat_1_v5_gn_4_75761' => 'lsa', 'Lsat_1_v5_gn_5_10920' => 'lsa', 'Manes.02G099900' => 'mes', 'Manes.11G096200' => 'mes', 'Manes.12G007200' => 'mes', 'Manes.14G048300' => 'mes', 'Manes.17G114700' => 'mes', 'Mapoly0002s0070' => 'mpo', 'Mapoly0029s0099' => 'mpo', 'MBI07_g24742_MAGBIO' => 'mbi', 'MBI10_g27988_MAGBIO' => 'mbi', 'MBI11_g13057_MAGBIO' => 'mbi', 'MD02G1137200' => 'mdo', 'MD06G1137200' => 'mdo', 'MD07G1122300' => 'mdo', 'MD09G1078200' => 'mdo', 'MD13G1123700' => 'mdo', 'MD14G1151900' => 'mdo', 'MD17G1030900' => 'mdo', 'MD17G1068200' => 'mdo', 'MD17G1068600' => 'mdo', 'Medtr3g077540' => 'mtr', 'Medtr4g105530' => 'mtr', 'Medtr8g076580' => 'mtr', 'Medtr8g076590' => 'mtr', 'Medtr8g096410' => 'mtr', 'MELO3C016411.2' => 'cme', 'MELO3C017780.2' => 'cme', 'MELO3C022560.2' => 'cme', 'MELO3C026187.2' => 'cme', 'MELO3C026286.2' => 'cme', 'MELO3C032854.2' => 'cme', 'Migut.H02495' => 'egut', 'Migut.I00561' => 'egut', 'Migut.K01015' => 'egut', 'Migut.K01016' => 'egut', 'Migut.L00743' => 'egut', 'Migut.L00744' => 'egut', 'Migut.L00746' => 'egut', 'Migut.L00798' => 'egut', 'Migut.L00799' => 'egut', 'Migut.N02096' => 'egut', 'MSTRG.11259' => 'ama', 'MSTRG.23142' => 'ama', 'MSTRG.2499' => 'ama', 'Nitab4.5_0000003g0730' => 'nta', 'Nitab4.5_0000137g0020' => 'nta', 'Nitab4.5_0000721g0210' => 'nta', 'Nitab4.5_0000723g0050' => 'nta', 'Nitab4.5_0000913g0070' => 'nta', 'Nitab4.5_0001332g0040' => 'nta', 'Nitab4.5_0001771g0050' => 'nta', 'Nitab4.5_0001918g0050' => 'nta', 'Nitab4.5_0002686g0030' => 'nta', 'Nitab4.5_0003156g0020' => 'nta', 'Nitab4.5_0003383g0040' => 'nta', 'Nitab4.5_0003918g0010' => 'nta', 'Nitab4.5_0006760g0010' => 'nta', 'Nn1g05981' => 'nnu', 'Nn1g06288' => 'nnu', 'Nn3g16371' => 'nnu', 'Nn3g16786' => 'nnu', 'Nn4g22232' => 'nnu', 'Oeu005144.1' => 'oeu', 'Oeu005145.1' => 'oeu', 'Oeu011348.1' => 'oeu', 'Oeu016415.1' => 'oeu', 'Oeu023501.1' => 'oeu', 'Oeu044473.1' => 'oeu', 'Oeu048892.2' => 'oeu', 'Os01g0549200' => 'osa', 'Os02g0469300' => 'osa', 'Os04g0311100' => 'osa', 'Os06g0474900' => 'osa', 'Os10g0181700' => 'osa', 'Os11g0454800' => 'osa', 'Peaxi162Scf00037g00714' => 'pax', 'Peaxi162Scf00084g01217' => 'pax', 'Peaxi162Scf00257g00217' => 'pax', 'Peaxi162Scf00516g00215' => 'pax', 'Peaxi162Scf00689g00123' => 'pax', 'PGR044G2719' => 'pgr', 'PGR083G1360' => 'pgr', 'PGR102G2849' => 'pgr', 'PGR119G2534' => 'pgr', 'PGSC0003DMG400003538' => 'stu', 'PGSC0003DMG400028138' => 'stu', 'PGSC0003DMG400031732' => 'stu', 'PGSC0003DMG400038165' => 'stu', 'Phvul.002G284600' => 'pvu', 'Phvul.003G258200' => 'pvu', 'Phvul.009G176500' => 'pvu', 'Potri.003G167201' => 'ptr', 'Potri.005G118400' => 'ptr', 'Potri.012G089000' => 'ptr', 'Potri.012G102800' => 'ptr', 'Potri.015G079400' => 'ptr', 'Potri.015G100900' => 'ptr', 'Pp3c14_9810' => 'ppa', 'Pp3c15_10450' => 'ppa', 'Pp3c20_19150' => 'ppa', 'Pp3c23_12740' => 'ppa', 'Pp3c23_6310' => 'ppa', 'Pp3c24_3720' => 'ppa', 'Pp3c27_2580' => 'ppa', 'Pp3c9_8990' => 'ppa', 'PRCOL_00002854' => 'pco', 'Prupe.1G221200' => 'ppe', 'Prupe.3G289000' => 'ppe', 'Prupe.5G147000' => 'ppe', 'Prupe.6G157300' => 'ppe', 'Prupe.7G163400' => 'ppe', 'Psat0s2177g0040' => 'psa', 'Psat3g174760' => 'psa', 'Psat3g192160' => 'psa', 'Psat4g058520' => 'psa', 'Psat4g096840' => 'psa', 'Psat7g037320' => 'psa', 'PSO017G1274' => 'pso', 'PSO017G5166' => 'pso', 'PSO063G4558' => 'pso', 'PSO170G4458' => 'pso', 'PSO170G5005' => 'pso', 'PSO210G6156' => 'pso', 'PSO210G6635' => 'pso', 'PSO210G7397' => 'pso', 'PSO210G7700' => 'pso', 'PSO455G0035' => 'pso', 'PSO455G0180' => 'pso', 'PSO478G4515' => 'pso', 'PSO832G1305' => 'pso', 'PSO832G3489' => 'pso', 'QL02p075247' => 'qlo', 'QL03p051148' => 'qlo', 'QL05p010313' => 'qlo', 'QL06p034627' => 'qlo', 'QL10p001889' => 'qlo', 'QL10p010846' => 'qlo', 'RcHm_v2.0_Chr1g0350621' => 'rch', 'RcHm_v2.0_Chr1g0350641' => 'rch', 'RcHm_v2.0_Chr2g0092891' => 'rch', 'RcHm_v2.0_Chr2g0100251' => 'rch', 'RcHm_v2.0_Chr2g0158661' => 'rch', 'RcHm_v2.0_Chr2g0172741' => 'rch', 'RcHm_v2.0_Chr4g0429571' => 'rch', 'RcHm_v2.0_Chr5g0042471' => 'rch', 'RcHm_v2.0_Chr7g0189451' => 'rch', 'Rhsim08G0052000' => 'rsi', 'Rhsim08G0174400' => 'rsi', 'Rhsim08G0193200' => 'rsi', 'Rhsim10G0214800' => 'rsi', 'Rhsim10G0214900' => 'rsi', 'Rhsim10G0215000' => 'rsi', 'Rhsim12G0022900' => 'rsi', 'Rhsim12G0177500' => 'rsi', 'Rhsim12G0177700' => 'rsi', 'Sabra03G0122600' => 'sbr', 'Sabra05G0097400' => 'sbr', 'Sabra12G0064100' => 'sbr', 'Sabra15G0121300' => 'sbr', 'SalBow2G0642' => 'sbo', 'SalBow5G2667' => 'sbo', 'SalBow5G4873' => 'sbo', 'SalBow8G2395' => 'sbo', 'Sc03g0003290' => 'sci', 'Sc10g0010130' => 'sci', 'Sc22g0003650' => 'sci', 'Sed0001603' => 'sed', 'Sed0004259' => 'sed', 'Sed0006789' => 'sed', 'Sed0011838' => 'sed', 'Sed0012964' => 'sed', 'Sed0016383' => 'sed', 'Sed0019010' => 'sed', 'Sed0020188' => 'sed', 'SEGI_04702' => 'sgi', 'SEGI_17231' => 'sgi', 'SEGI_18877' => 'sgi', 'SEGI_25196' => 'sgi', 'SEGI_25515' => 'sgi', 'SEGI_28445' => 'sgi', 'SEGI_37452' => 'sgi', 'SGA_v2.0_scaffold188G40336' => 'sas', 'SGA_v2.0_scaffold228G43247' => 'sas', 'SGA_v2.0_scaffold280G46853' => 'sas', 'SGA_v2.0_scaffold34G13808' => 'sas', 'SGA_v2.0_scaffold40G15576' => 'sas', 'SGA_v2.0_scaffold611G53188' => 'sas', 'SGA_v2.0_scaffold78G25461' => 'sas', 'SGA_v2.0_scaffold90G27888' => 'sas', 'SHI08601' => 'shi', 'SHI08606' => 'shi', 'SHI17117' => 'shi', 'SHI17119' => 'shi', 'SMO118G0201' => 'smo', 'SMO169G0247' => 'smo', 'SMO176G0006' => 'smo', 'SMO176G0015' => 'smo', 'SMO202G0006' => 'smo', 'SMO240G0050' => 'smo', 'SMO286G0009' => 'smo', 'SMO338G0033' => 'smo', 'SMO356G0533' => 'smo', 'SMO364G0382' => 'smo', 'SMO367G0166' => 'smo', 'SMO367G1098' => 'smo', 'Solyc01g009920.3' => 'sly', 'Solyc01g099300.3' => 'sly', 'Solyc02g084700.3' => 'sly', 'Solyc03g097520.3' => 'sly', 'Solyc06g071580.3' => 'sly', 'Solyc10g081760.3' => 'sly', 'Sopen01g005480' => 'spe', 'Sopen01g042850' => 'spe', 'Sopen02g029370' => 'spe', 'Sopen03g028280' => 'spe', 'Sopen06g027870' => 'spe', 'Sopen10g032270' => 'spe', 'Sp5g18180' => 'spa', 'Sp6g12880' => 'spa', 'Sp6g30850' => 'spa', 'Sp7g22960' => 'spa', 'Sp7g34010' => 'spa', 'SpUn1326_0010' => 'spa', 'TAR371G0242' => 'tar', 'TAR622G0638' => 'tar', 'TAR628G1548' => 'tar', 'TAR629G1079' => 'tar', 'TAR629G3413' => 'tar', 'THA.LOC104804249' => 'tha', 'THA.LOC104808315' => 'tha', 'THA.LOC104809238' => 'tha', 'THA.LOC104825484' => 'tha', 'Thecc.01G025500' => 'tca', 'Thecc.03G015800' => 'tca', 'Thecc.03G018000' => 'tca', 'Thecc.03G134800' => 'tca', 'Thecc.04G014700' => 'tca', 'Thhalv10006991m.g' => 'esa', 'Thhalv10012707m.g' => 'esa', 'Thhalv10015739m.g' => 'esa', 'Thhalv10024553m.g' => 'esa', 'Thhalv10024673m.g' => 'esa', 'Thhalv10029187m.g' => 'esa', 'TPR.G12971' => 'tpr', 'TPR.G29396' => 'tpr', 'TPR.G33376' => 'tpr', 'TPR.G35508' => 'tpr', 'TPR.G35516' => 'tpr', 'TPR.G37317' => 'tpr', 'TPR.G37389' => 'tpr', 'TPR.G37523' => 'tpr', 'TPR.G559' => 'tpr', 'TWI14G0070' => 'twi', 'TWI14G0729' => 'twi', 'TWI18G0596' => 'twi', 'TWI39G0780' => 'twi', 'TWI39G0850' => 'twi', 'TWI73G1052' => 'twi', 'unitig_52.g17485' => 'ugi', 'unitig_61.g26355' => 'ugi', 'vmacro01040' => 'vma', 'vmacro16731' => 'vma', 'vmacro18270' => 'vma', 'vmacro19142' => 'vma', 'vmacro19407' => 'vma', 'vmacro19408' => 'vma', 'vmacro21899' => 'vma', 'vmacro21900' => 'vma', 'vmacro21901' => 'vma', 'VMungo0251G0490' => 'vmu', 'VMungo0251G1748' => 'vmu', 'VMungo1309G0421' => 'vmu', 'Zm00001eb086500' => 'zma', 'Zm00001eb150680' => 'zma', 'Zm00001eb162330' => 'zma', 'Zm00001eb203130' => 'zma', 'Zm00001eb369480' => 'zma', 'Zm00001eb382340' => 'zma', 'Zm00001eb416360' => 'zma' ) $gf_id = 'HOM05D000902' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000902' ) $data_identifier = 'HOM05D000902' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 13, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 10, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 6, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 9, 'hma' => (int) 12, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 4, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 6, 'ppa' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 6, 'rch' => (int) 9, 'rsi' => (int) 9, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 12, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 3, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416360' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000902', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '663', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02470' => 'bna', 'A01p16260' => 'bna', 'A02p01680' => 'bna', 'A03p16600' => 'bna', 'A03p55660' => 'bna', 'A03p64160' => 'bna', 'A03p64170' => 'bna', 'A08p31900' => 'bna', 'A09p59530' => 'bna', 'A10p08230' => 'bna', 'A10p25090' => 'bna', 'Aa31LG3G7100' => 'aar', 'Aa31LG3G7110' => 'aar', 'Aa31LG6G13160' => 'aar', 'Aa31LG7G10770' => 'aar', 'Aa31LG7G3830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2723' => 'aag', 'Actinidia08045' => 'ach', 'Actinidia08888' => 'ach', 'Actinidia18333' => 'ach', 'Actinidia19334' => 'ach', 'Actinidia25552' => 'ach', 'Actinidia26089' => 'ach', 'Actinidia30615' => 'ach', 'Actinidia30616' => 'ach', 'Actinidia33083' => 'ach', 'Actinidia35762' => 'ach', 'Ah.02g110620' => 'amhyb', 'Ah.11g046390' => 'amhyb', 'AL1G31670' => 'aly', 'AL6G23730' => 'aly', 'AL7G14740' => 'aly', 'AL7G14750' => 'aly', 'AL7G14760' => 'aly', 'AL7G28220' => 'aly', 'AL8G24940' => 'aly', 'Aqoxy3G01665' => 'aox', 'Aqoxy3G02853' => 'aox', 'Aqoxy5G01513' => 'aox', 'Aqoxy5G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8SKA4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ75LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKDA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0LJZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7REX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZP4YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWX7I5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2QKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS0L9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPCD8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q161UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC7XCF' => 'arhy', 'AT1G19100' => 'ath', 'AT4G24970' => 'ath', 'AT4G36270' => 'ath', 'AT4G36280' => 'ath', 'AT4G36290' => 'ath', 'AT5G13130' => 'ath', 'AT5G50780' => 'ath', 'ATR0582G266' => 'atr', 'ATR0661G195' => 'atr', 'ATR1152G031' => 'atr', 'Atru.chr11.2382' => 'acertr', 'Atru.chr12.2337' => 'acertr', 'Atru.chr3.744' => 'acertr', 'Atru.chr6.1870' => 'acertr', 'Atru.chr9.2515' => 'acertr', 'AUR62004120' => 'cqu', 'AUR62005667' => 'cqu', 'AUR62007634' => 'cqu', 'AUR62008186' => 'cqu', 'AUR62008187' => 'cqu', 'AUR62008188' => 'cqu', 'AUR62027954' => 'cqu', 'AUR62028766' => 'cqu', 'AUR62028767' => 'cqu', 'AUR62028768' => 'cqu', 'AUR62028886' => 'cqu', 'AUR62029563' => 'cqu', 'AUR62038832' => 'cqu', 'BcaB01g04149' => 'bca', 'BcaB03g12940' => 'bca', 'BcaB03g13090' => 'bca', 'BcaB03g14466' => 'bca', 'BcaB05g24035' => 'bca', 'BcaC01g06050' => 'bca', 'BcaC04g19148' => 'bca', 'BcaC04g20761' => 'bca', 'BcaC06g32845' => 'bca', 'BcaC07g41274' => 'bca', 'BcaC09g50827' => 'bca', 'BcaNung00741' => 'bca', 'BcaNung00742' => 'bca', 'BcaNung01859' => 'bca', 'BcaNung03985' => 'bca', 'BcaNung03989' => 'bca', 'BcaNung05661' => 'bca', 'BolC1t00257H' => 'bol', 'BolC1t01956H' => 'bol', 'BolC2t06534H' => 'bol', 'BolC3t14334H' => 'bol', 'BolC5t30451H' => 'bol', 'BolC7t45880H' => 'bol', 'BolC7t46586H' => 'bol', 'BolC8t49301H' => 'bol', 'BolC8t51837H' => 'bol', 'BolC9t56822H' => 'bol', 'BolC9t59235H' => 'bol', 'BraA01t00234Z' => 'bra', 'BraA01t01563Z' => 'bra', 'BraA02t05147Z' => 'bra', 'BraA03t10947Z' => 'bra', 'BraA03t14633Z' => 'bra', 'BraA08t35112Z' => 'bra', 'BraA09t41330Z' => 'bra', 'BraA10t44570Z' => 'bra', 'C01p02670' => 'bna', 'C01p20260' => 'bna', 'C02p05890' => 'bna', 'C03p19530' => 'bna', 'C05p17470' => 'bna', 'C07p53900' => 'bna', 'C07p61630' => 'bna', 'C08p16800' => 'bna', 'C08p42810' => 'bna', 'C09p39480' => 'bna', 'C09p63980' => 'bna', 'CAN.G1001.7' => 'can', 'CAN.G1034.55' => 'can', 'CAN.G143.7' => 'can', 'CAN.G3340.1' => 'can', 'CAN.G358.19' => 'can', 'CAN.G373.2' => 'can', 'CAN.G674.16' => 'can', 'CAN.G674.17' => 'can', 'CAN.G674.18' => 'can', 'CAN.G732.2' => 'can', 'CAN.G732.3' => 'can', 'CAN.G993.39' => 'can', 'CANSAT01G2052' => 'cansat', 'CANSAT80G0070' => 'cansat', 'CANSAT80G0483' => 'cansat', 'CANSAT80G0625' => 'cansat', 'CARHR019690' => 'chi', 'CARHR080280' => 'chi', 'CARHR152750' => 'chi', 'CARHR152760' => 'chi', 'CARHR152770' => 'chi', 'CARHR200340' => 'chi', 'CARHR232370' => 'chi', 'CARHR244670' => 'chi', 'CARHR244680' => 'chi', 'CARHR257520' => 'chi', 'Carub.0001s1872' => 'cru', 'Carub.0006s1130' => 'cru', 'Carub.0007s0396' => 'cru', 'Carub.0007s0397' => 'cru', 'Carub.0007s1608' => 'cru', 'Carub.0008s1068' => 'cru', 'Carub.0008s1077' => 'cru', 'Ca_16158_v3' => 'car', 'Ca_17571_v3' => 'car', 'Ca_21936_v3' => 'car', 'Ca_22350_v3' => 'car', 'CBR_g22445' => 'cbr', 'CBR_g26290' => 'cbr', 'Cc04_g09610' => 'ccan', 'Cc04_g12280' => 'ccan', 'Cc07_g10230' => 'ccan', 'CDE02G0093' => 'cde', 'CDE02G0701' => 'cde', 'CDE04G1050' => 'cde', 'CDE05G1833' => 'cde', 'CDE05G3058' => 'cde', 'CDE05G3380' => 'cde', 'CDE06G0536' => 'cde', 'Cfa006923' => 'cfa', 'Cfa009402' => 'cfa', 'Cfa018751' => 'cfa', 'Cfa019164' => 'cfa', 'Cfa022935' => 'cfa', 'Ciclev10019081m.g' => 'ccl', 'Ciclev10025076m.g' => 'ccl', 'Ciclev10030712m.g' => 'ccl', 'Ciclev10033760m.g' => 'ccl', 'CiPaw.05G105600' => 'cil', 'CiPaw.08G136700' => 'cil', 'CiPaw.11G003900' => 'cil', 'CiPaw.11G023700' => 'cil', 'CiPaw.12G003700' => 'cil', 'ClCG06G017100' => 'cla', 'ClCG06G018110' => 'cla', 'ClCG07G008800' => 'cla', 'ClCG07G015330' => 'cla', 'COL.COLO4_13698' => 'col', 'COL.COLO4_16659' => 'col', 'COL.COLO4_21986' => 'col', 'COL.COLO4_24049' => 'col', 'COL.COLO4_29061' => 'col', 'COL.COLO4_29075' => 'col', 'COL.COLO4_30094' => 'col', 'Cpa.g.c33689' => 'cpa', 'Cpa.g.sc108.39' => 'cpa', 'Cpa.g.sc108.41' => 'cpa', 'Cpa.g.sc1163.1' => 'cpa', 'Cpa.g.sc4.155' => 'cpa', 'Cpa.g.sc6.194' => 'cpa', 'CsaV3_1G000340' => 'csa', 'CsaV3_1G001400' => 'csa', 'CsaV3_4G002220' => 'csa', 'CsaV3_4G005370' => 'csa', 'CSS0007487' => 'camsi', 'CSS0008066' => 'camsi', 'CSS0009120' => 'camsi', 'CSS0015512' => 'camsi', 'CSS0022409' => 'camsi', 'CSS0025358' => 'camsi', 'CSS0044547' => 'camsi', 'DCAR_013057' => 'dca', 'DCAR_015058' => 'dca', 'DCAR_016027' => 'dca', 'DCAR_017327' => 'dca', 'DCAR_020743' => 'dca', 'DCAR_026157' => 'dca', 'DCAR_032339' => 'dca', 'DCAR_032340' => 'dca', 'Dinv11200' => 'din', 'Dinv11201' => 'din', 'Dinv20631' => 'din', 'Dinv23182' => 'din', 'Dinv33466' => 'din', 'Dinv33583' => 'din', 'Dinv38565' => 'din', 'Duzib068G0200' => 'dzi', 'Duzib147G0132' => 'dzi', 'Duzib147G0635' => 'dzi', 'Duzib205G1670' => 'dzi', 'Duzib251G0606' => 'dzi', 'ECA232G3336' => 'eca', 'ECA232G3763' => 'eca', 'ECA232G4845' => 'eca', 'ECA234G1607' => 'eca', 'ECA246G0932' => 'eca', 'ECA247G0781' => 'eca', 'ECA247G1932' => 'eca', 'ECA247G2079' => 'eca', 'ECA247G3338' => 'eca', 'ECA247G4115' => 'eca', 'EL10Ac3g06552' => 'bvu', 'EL10Ac5g10721' => 'bvu', 'EL10Ac5g10722' => 'bvu', 'EL10Ac5g10723' => 'bvu', 'EL10Ac5g11361' => 'bvu', 'EL10Ac6g13553' => 'bvu', 'EL10As8g23872' => 'bvu', 'Eucgr.B00250' => 'egr', 'Eucgr.B00251' => 'egr', 'Eucgr.B03533' => 'egr', 'Eucgr.I02381' => 'egr', 'Eucgr.K02700' => 'egr', 'FAN02G0174' => 'fan', 'FAN02G3146' => 'fan', 'FAN04G1672' => 'fan', 'FAN04G2273' => 'fan', 'FAN05G2791' => 'fan', 'FAN05G4035' => 'fan', 'FAN07G0834' => 'fan', 'FAN08G1198' => 'fan', 'FAN09G4182' => 'fan', 'FAN12G0496' => 'fan', 'FAN13G1027' => 'fan', 'FAN13G2951' => 'fan', 'FAN14G0705' => 'fan', 'FAN14G0720' => 'fan', 'FAN17G0201' => 'fan', 'FAN17G2665' => 'fan', 'FAN18G1456' => 'fan', 'FAN18G1525' => 'fan', 'FAN18G3500' => 'fan', 'FAN28G2670' => 'fan', 'FvH4_1g12391' => 'fve', 'FvH4_4g23220' => 'fve', 'FvH4_5g08810' => 'fve', 'FvH4_5g28960' => 'fve', 'FvH4_6g42820' => 'fve', 'FvH4_6g51110' => 'fve', 'Glyma.02G051802' => 'gma', 'Glyma.04G185300' => 'gma', 'Glyma.05G202900' => 'gma', 'Glyma.08G010300' => 'gma', 'Glyma.16G131900' => 'gma', 'Glyma.17G087900' => 'gma', 'Gohir.A07G048600' => 'ghi', 'Gohir.A11G179000' => 'ghi', 'Gohir.A12G140900' => 'ghi', 'Gohir.A12G140950' => 'ghi', 'Gohir.A12G191700' => 'ghi', 'Gohir.A13G086300' => 'ghi', 'Gohir.D07G052900' => 'ghi', 'Gohir.D11G186600' => 'ghi', 'Gohir.D12G145575' => 'ghi', 'Gohir.D12G145650' => 'ghi', 'Gohir.D12G145725' => 'ghi', 'Gohir.D12G194050' => 'ghi', 'Gohir.D13G091800' => 'ghi', 'Gorai.001G055900' => 'gra', 'Gorai.007G198400' => 'gra', 'Gorai.008G157000' => 'gra', 'Gorai.008G157100' => 'gra', 'Gorai.008G208700' => 'gra', 'Gorai.010G138700' => 'gra', 'GSVIVG01000977001' => 'vvi', 'GSVIVG01007708001' => 'vvi', 'GSVIVG01008587001' => 'vvi', 'GSVIVG01018849001' => 'vvi', 'GSVIVG01032432001' => 'vvi', 'HanXRQChr02g0034131' => 'han', 'HanXRQChr02g0035981' => 'han', 'HanXRQChr02g0035991' => 'han', 'HanXRQChr05g0155611' => 'han', 'HanXRQChr05g0155621' => 'han', 'HanXRQChr08g0236501' => 'han', 'HanXRQChr09g0261321' => 'han', 'HanXRQChr09g0272081' => 'han', 'HanXRQChr10g0310741' => 'han', 'HanXRQChr11g0325591' => 'han', 'HanXRQChr12g0385691' => 'han', 'HanXRQChr13g0387801' => 'han', 'HanXRQChr15g0463011' => 'han', 'Haze_03826' => 'cav', 'Haze_03827' => 'cav', 'Haze_07183' => 'cav', 'Haze_07537' => 'cav', 'Haze_07539' => 'cav', 'Haze_12461' => 'cav', 'Haze_16115' => 'cav', 'Haze_16808' => 'cav', 'Haze_18531' => 'cav', 'Hma1.2p1_0046F.1_g026700' => 'hma', 'Hma1.2p1_0046F.1_g026710' => 'hma', 'Hma1.2p1_0168F.1_g074340' => 'hma', 'Hma1.2p1_0266F.1_g107030' => 'hma', 'Hma1.2p1_0266F.1_g107060' => 'hma', 'Hma1.2p1_0275F.1_g110510' => 'hma', 'Hma1.2p1_0592F.1_g185490' => 'hma', 'Hma1.2p1_0592F.1_g185500' => 'hma', 'Hma1.2p1_0592F.1_g185510' => 'hma', 'Hma1.2p1_0592F.1_g185520' => 'hma', 'Hma1.2p1_0592F.1_g185530' => 'hma', 'Hma1.2p1_0818F.1_g223450' => 'hma', 'HPP92_009708' => 'vpl', 'HPP92_009793' => 'vpl', 'HPP92_009796' => 'vpl', 'HPP92_009797' => 'vpl', 'HPP92_014940' => 'vpl', 'HPP92_014988' => 'vpl', 'Hund02463' => 'sun', 'Hund02760' => 'sun', 'Hund05071' => 'sun', 'Hund10108' => 'sun', 'Hund11204' => 'sun', 'Hund14016' => 'sun', 'Hund16464' => 'sun', 'Lalb_Chr09g0333391' => 'lal', 'Lalb_Chr11g0070461' => 'lal', 'Lalb_Chr12g0201671' => 'lal', 'Lalb_Chr13g0297161' => 'lal', 'Lj1g0002823' => 'lja', 'Lj3C1074T6' => 'lonja', 'Lj4A212T28' => 'lonja', 'Lj4g0005516' => 'lja', 'Lj4g0013705' => 'lja', 'Lj4g0027865' => 'lja', 'Lj5C92G16' => 'lonja', 'Lj5C92T12' => 'lonja', 'Lj7C596T3' => 'lonja', 'Lj9A446G59' => 'lonja', 'Lj9A482G21' => 'lonja', 'Lsat_1_v5_gn_1_28261' => 'lsa', 'Lsat_1_v5_gn_1_28281' => 'lsa', 'Lsat_1_v5_gn_1_32721' => 'lsa', 'Lsat_1_v5_gn_4_151760' => 'lsa', 'Lsat_1_v5_gn_4_2120' => 'lsa', 'Lsat_1_v5_gn_4_75761' => 'lsa', 'Lsat_1_v5_gn_5_10920' => 'lsa', 'Manes.02G099900' => 'mes', 'Manes.11G096200' => 'mes', 'Manes.12G007200' => 'mes', 'Manes.14G048300' => 'mes', 'Manes.17G114700' => 'mes', 'Mapoly0002s0070' => 'mpo', 'Mapoly0029s0099' => 'mpo', 'MBI07_g24742_MAGBIO' => 'mbi', 'MBI10_g27988_MAGBIO' => 'mbi', 'MBI11_g13057_MAGBIO' => 'mbi', 'MD02G1137200' => 'mdo', 'MD06G1137200' => 'mdo', 'MD07G1122300' => 'mdo', 'MD09G1078200' => 'mdo', 'MD13G1123700' => 'mdo', 'MD14G1151900' => 'mdo', 'MD17G1030900' => 'mdo', 'MD17G1068200' => 'mdo', 'MD17G1068600' => 'mdo', 'Medtr3g077540' => 'mtr', 'Medtr4g105530' => 'mtr', 'Medtr8g076580' => 'mtr', 'Medtr8g076590' => 'mtr', 'Medtr8g096410' => 'mtr', 'MELO3C016411.2' => 'cme', 'MELO3C017780.2' => 'cme', 'MELO3C022560.2' => 'cme', 'MELO3C026187.2' => 'cme', 'MELO3C026286.2' => 'cme', 'MELO3C032854.2' => 'cme', 'Migut.H02495' => 'egut', 'Migut.I00561' => 'egut', 'Migut.K01015' => 'egut', 'Migut.K01016' => 'egut', 'Migut.L00743' => 'egut', 'Migut.L00744' => 'egut', 'Migut.L00746' => 'egut', 'Migut.L00798' => 'egut', 'Migut.L00799' => 'egut', 'Migut.N02096' => 'egut', 'MSTRG.11259' => 'ama', 'MSTRG.23142' => 'ama', 'MSTRG.2499' => 'ama', 'Nitab4.5_0000003g0730' => 'nta', 'Nitab4.5_0000137g0020' => 'nta', 'Nitab4.5_0000721g0210' => 'nta', 'Nitab4.5_0000723g0050' => 'nta', 'Nitab4.5_0000913g0070' => 'nta', 'Nitab4.5_0001332g0040' => 'nta', 'Nitab4.5_0001771g0050' => 'nta', 'Nitab4.5_0001918g0050' => 'nta', 'Nitab4.5_0002686g0030' => 'nta', 'Nitab4.5_0003156g0020' => 'nta', 'Nitab4.5_0003383g0040' => 'nta', 'Nitab4.5_0003918g0010' => 'nta', 'Nitab4.5_0006760g0010' => 'nta', 'Nn1g05981' => 'nnu', 'Nn1g06288' => 'nnu', 'Nn3g16371' => 'nnu', 'Nn3g16786' => 'nnu', 'Nn4g22232' => 'nnu', 'Oeu005144.1' => 'oeu', 'Oeu005145.1' => 'oeu', 'Oeu011348.1' => 'oeu', 'Oeu016415.1' => 'oeu', 'Oeu023501.1' => 'oeu', 'Oeu044473.1' => 'oeu', 'Oeu048892.2' => 'oeu', 'Os01g0549200' => 'osa', 'Os02g0469300' => 'osa', 'Os04g0311100' => 'osa', 'Os06g0474900' => 'osa', 'Os10g0181700' => 'osa', 'Os11g0454800' => 'osa', 'Peaxi162Scf00037g00714' => 'pax', 'Peaxi162Scf00084g01217' => 'pax', 'Peaxi162Scf00257g00217' => 'pax', 'Peaxi162Scf00516g00215' => 'pax', 'Peaxi162Scf00689g00123' => 'pax', 'PGR044G2719' => 'pgr', 'PGR083G1360' => 'pgr', 'PGR102G2849' => 'pgr', 'PGR119G2534' => 'pgr', 'PGSC0003DMG400003538' => 'stu', 'PGSC0003DMG400028138' => 'stu', 'PGSC0003DMG400031732' => 'stu', 'PGSC0003DMG400038165' => 'stu', 'Phvul.002G284600' => 'pvu', 'Phvul.003G258200' => 'pvu', 'Phvul.009G176500' => 'pvu', 'Potri.003G167201' => 'ptr', 'Potri.005G118400' => 'ptr', 'Potri.012G089000' => 'ptr', 'Potri.012G102800' => 'ptr', 'Potri.015G079400' => 'ptr', 'Potri.015G100900' => 'ptr', 'Pp3c14_9810' => 'ppa', 'Pp3c15_10450' => 'ppa', 'Pp3c20_19150' => 'ppa', 'Pp3c23_12740' => 'ppa', 'Pp3c23_6310' => 'ppa', 'Pp3c24_3720' => 'ppa', 'Pp3c27_2580' => 'ppa', 'Pp3c9_8990' => 'ppa', 'PRCOL_00002854' => 'pco', 'Prupe.1G221200' => 'ppe', 'Prupe.3G289000' => 'ppe', 'Prupe.5G147000' => 'ppe', 'Prupe.6G157300' => 'ppe', 'Prupe.7G163400' => 'ppe', 'Psat0s2177g0040' => 'psa', 'Psat3g174760' => 'psa', 'Psat3g192160' => 'psa', 'Psat4g058520' => 'psa', 'Psat4g096840' => 'psa', 'Psat7g037320' => 'psa', 'PSO017G1274' => 'pso', 'PSO017G5166' => 'pso', 'PSO063G4558' => 'pso', 'PSO170G4458' => 'pso', 'PSO170G5005' => 'pso', 'PSO210G6156' => 'pso', 'PSO210G6635' => 'pso', 'PSO210G7397' => 'pso', 'PSO210G7700' => 'pso', 'PSO455G0035' => 'pso', 'PSO455G0180' => 'pso', 'PSO478G4515' => 'pso', 'PSO832G1305' => 'pso', 'PSO832G3489' => 'pso', 'QL02p075247' => 'qlo', 'QL03p051148' => 'qlo', 'QL05p010313' => 'qlo', 'QL06p034627' => 'qlo', 'QL10p001889' => 'qlo', 'QL10p010846' => 'qlo', 'RcHm_v2.0_Chr1g0350621' => 'rch', 'RcHm_v2.0_Chr1g0350641' => 'rch', 'RcHm_v2.0_Chr2g0092891' => 'rch', 'RcHm_v2.0_Chr2g0100251' => 'rch', 'RcHm_v2.0_Chr2g0158661' => 'rch', 'RcHm_v2.0_Chr2g0172741' => 'rch', 'RcHm_v2.0_Chr4g0429571' => 'rch', 'RcHm_v2.0_Chr5g0042471' => 'rch', 'RcHm_v2.0_Chr7g0189451' => 'rch', 'Rhsim08G0052000' => 'rsi', 'Rhsim08G0174400' => 'rsi', 'Rhsim08G0193200' => 'rsi', 'Rhsim10G0214800' => 'rsi', 'Rhsim10G0214900' => 'rsi', 'Rhsim10G0215000' => 'rsi', 'Rhsim12G0022900' => 'rsi', 'Rhsim12G0177500' => 'rsi', 'Rhsim12G0177700' => 'rsi', 'Sabra03G0122600' => 'sbr', 'Sabra05G0097400' => 'sbr', 'Sabra12G0064100' => 'sbr', 'Sabra15G0121300' => 'sbr', 'SalBow2G0642' => 'sbo', 'SalBow5G2667' => 'sbo', 'SalBow5G4873' => 'sbo', 'SalBow8G2395' => 'sbo', 'Sc03g0003290' => 'sci', 'Sc10g0010130' => 'sci', 'Sc22g0003650' => 'sci', 'Sed0001603' => 'sed', 'Sed0004259' => 'sed', 'Sed0006789' => 'sed', 'Sed0011838' => 'sed', 'Sed0012964' => 'sed', 'Sed0016383' => 'sed', 'Sed0019010' => 'sed', 'Sed0020188' => 'sed', 'SEGI_04702' => 'sgi', 'SEGI_17231' => 'sgi', 'SEGI_18877' => 'sgi', 'SEGI_25196' => 'sgi', 'SEGI_25515' => 'sgi', 'SEGI_28445' => 'sgi', 'SEGI_37452' => 'sgi', 'SGA_v2.0_scaffold188G40336' => 'sas', 'SGA_v2.0_scaffold228G43247' => 'sas', 'SGA_v2.0_scaffold280G46853' => 'sas', 'SGA_v2.0_scaffold34G13808' => 'sas', 'SGA_v2.0_scaffold40G15576' => 'sas', 'SGA_v2.0_scaffold611G53188' => 'sas', 'SGA_v2.0_scaffold78G25461' => 'sas', 'SGA_v2.0_scaffold90G27888' => 'sas', 'SHI08601' => 'shi', 'SHI08606' => 'shi', 'SHI17117' => 'shi', 'SHI17119' => 'shi', 'SMO118G0201' => 'smo', 'SMO169G0247' => 'smo', 'SMO176G0006' => 'smo', 'SMO176G0015' => 'smo', 'SMO202G0006' => 'smo', 'SMO240G0050' => 'smo', 'SMO286G0009' => 'smo', 'SMO338G0033' => 'smo', 'SMO356G0533' => 'smo', 'SMO364G0382' => 'smo', 'SMO367G0166' => 'smo', 'SMO367G1098' => 'smo', 'Solyc01g009920.3' => 'sly', 'Solyc01g099300.3' => 'sly', 'Solyc02g084700.3' => 'sly', 'Solyc03g097520.3' => 'sly', 'Solyc06g071580.3' => 'sly', 'Solyc10g081760.3' => 'sly', 'Sopen01g005480' => 'spe', 'Sopen01g042850' => 'spe', 'Sopen02g029370' => 'spe', 'Sopen03g028280' => 'spe', 'Sopen06g027870' => 'spe', 'Sopen10g032270' => 'spe', 'Sp5g18180' => 'spa', 'Sp6g12880' => 'spa', 'Sp6g30850' => 'spa', 'Sp7g22960' => 'spa', 'Sp7g34010' => 'spa', 'SpUn1326_0010' => 'spa', 'TAR371G0242' => 'tar', 'TAR622G0638' => 'tar', 'TAR628G1548' => 'tar', 'TAR629G1079' => 'tar', 'TAR629G3413' => 'tar', 'THA.LOC104804249' => 'tha', 'THA.LOC104808315' => 'tha', 'THA.LOC104809238' => 'tha', 'THA.LOC104825484' => 'tha', 'Thecc.01G025500' => 'tca', 'Thecc.03G015800' => 'tca', 'Thecc.03G018000' => 'tca', 'Thecc.03G134800' => 'tca', 'Thecc.04G014700' => 'tca', 'Thhalv10006991m.g' => 'esa', 'Thhalv10012707m.g' => 'esa', 'Thhalv10015739m.g' => 'esa', 'Thhalv10024553m.g' => 'esa', 'Thhalv10024673m.g' => 'esa', 'Thhalv10029187m.g' => 'esa', 'TPR.G12971' => 'tpr', 'TPR.G29396' => 'tpr', 'TPR.G33376' => 'tpr', 'TPR.G35508' => 'tpr', 'TPR.G35516' => 'tpr', 'TPR.G37317' => 'tpr', 'TPR.G37389' => 'tpr', 'TPR.G37523' => 'tpr', 'TPR.G559' => 'tpr', 'TWI14G0070' => 'twi', 'TWI14G0729' => 'twi', 'TWI18G0596' => 'twi', 'TWI39G0780' => 'twi', 'TWI39G0850' => 'twi', 'TWI73G1052' => 'twi', 'unitig_52.g17485' => 'ugi', 'unitig_61.g26355' => 'ugi', 'vmacro01040' => 'vma', 'vmacro16731' => 'vma', 'vmacro18270' => 'vma', 'vmacro19142' => 'vma', 'vmacro19407' => 'vma', 'vmacro19408' => 'vma', 'vmacro21899' => 'vma', 'vmacro21900' => 'vma', 'vmacro21901' => 'vma', 'VMungo0251G0490' => 'vmu', 'VMungo0251G1748' => 'vmu', 'VMungo1309G0421' => 'vmu', 'Zm00001eb086500' => 'zma', 'Zm00001eb150680' => 'zma', 'Zm00001eb162330' => 'zma', 'Zm00001eb203130' => 'zma', 'Zm00001eb369480' => 'zma', 'Zm00001eb382340' => 'zma', 'Zm00001eb416360' => 'zma' ), 'gf_id' => 'HOM05D000902', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000902' ), 'data_identifier' => 'HOM05D000902', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000902', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '663', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02470' => 'bna', 'A01p16260' => 'bna', 'A02p01680' => 'bna', 'A03p16600' => 'bna', 'A03p55660' => 'bna', 'A03p64160' => 'bna', 'A03p64170' => 'bna', 'A08p31900' => 'bna', 'A09p59530' => 'bna', 'A10p08230' => 'bna', 'A10p25090' => 'bna', 'Aa31LG3G7100' => 'aar', 'Aa31LG3G7110' => 'aar', 'Aa31LG6G13160' => 'aar', 'Aa31LG7G10770' => 'aar', 'Aa31LG7G3830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2723' => 'aag', 'Actinidia08045' => 'ach', 'Actinidia08888' => 'ach', 'Actinidia18333' => 'ach', 'Actinidia19334' => 'ach', 'Actinidia25552' => 'ach', 'Actinidia26089' => 'ach', 'Actinidia30615' => 'ach', 'Actinidia30616' => 'ach', 'Actinidia33083' => 'ach', 'Actinidia35762' => 'ach', 'Ah.02g110620' => 'amhyb', 'Ah.11g046390' => 'amhyb', 'AL1G31670' => 'aly', 'AL6G23730' => 'aly', 'AL7G14740' => 'aly', 'AL7G14750' => 'aly', 'AL7G14760' => 'aly', 'AL7G28220' => 'aly', 'AL8G24940' => 'aly', 'Aqoxy3G01665' => 'aox', 'Aqoxy3G02853' => 'aox', 'Aqoxy5G01513' => 'aox', 'Aqoxy5G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8SKA4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ75LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKDA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0LJZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7REX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZP4YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWX7I5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2QKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS0L9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPCD8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q161UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC7XCF' => 'arhy', 'AT1G19100' => 'ath', 'AT4G24970' => 'ath', 'AT4G36270' => 'ath', 'AT4G36280' => 'ath', 'AT4G36290' => 'ath', 'AT5G13130' => 'ath', 'AT5G50780' => 'ath', 'ATR0582G266' => 'atr', 'ATR0661G195' => 'atr', 'ATR1152G031' => 'atr', 'Atru.chr11.2382' => 'acertr', 'Atru.chr12.2337' => 'acertr', 'Atru.chr3.744' => 'acertr', 'Atru.chr6.1870' => 'acertr', 'Atru.chr9.2515' => 'acertr', 'AUR62004120' => 'cqu', 'AUR62005667' => 'cqu', 'AUR62007634' => 'cqu', 'AUR62008186' => 'cqu', 'AUR62008187' => 'cqu', 'AUR62008188' => 'cqu', 'AUR62027954' => 'cqu', 'AUR62028766' => 'cqu', 'AUR62028767' => 'cqu', 'AUR62028768' => 'cqu', 'AUR62028886' => 'cqu', 'AUR62029563' => 'cqu', 'AUR62038832' => 'cqu', 'BcaB01g04149' => 'bca', 'BcaB03g12940' => 'bca', 'BcaB03g13090' => 'bca', 'BcaB03g14466' => 'bca', 'BcaB05g24035' => 'bca', 'BcaC01g06050' => 'bca', 'BcaC04g19148' => 'bca', 'BcaC04g20761' => 'bca', 'BcaC06g32845' => 'bca', 'BcaC07g41274' => 'bca', 'BcaC09g50827' => 'bca', 'BcaNung00741' => 'bca', 'BcaNung00742' => 'bca', 'BcaNung01859' => 'bca', 'BcaNung03985' => 'bca', 'BcaNung03989' => 'bca', 'BcaNung05661' => 'bca', 'BolC1t00257H' => 'bol', 'BolC1t01956H' => 'bol', 'BolC2t06534H' => 'bol', 'BolC3t14334H' => 'bol', 'BolC5t30451H' => 'bol', 'BolC7t45880H' => 'bol', 'BolC7t46586H' => 'bol', 'BolC8t49301H' => 'bol', 'BolC8t51837H' => 'bol', 'BolC9t56822H' => 'bol', 'BolC9t59235H' => 'bol', 'BraA01t00234Z' => 'bra', 'BraA01t01563Z' => 'bra', 'BraA02t05147Z' => 'bra', 'BraA03t10947Z' => 'bra', 'BraA03t14633Z' => 'bra', 'BraA08t35112Z' => 'bra', 'BraA09t41330Z' => 'bra', 'BraA10t44570Z' => 'bra', 'C01p02670' => 'bna', 'C01p20260' => 'bna', 'C02p05890' => 'bna', 'C03p19530' => 'bna', 'C05p17470' => 'bna', 'C07p53900' => 'bna', 'C07p61630' => 'bna', 'C08p16800' => 'bna', 'C08p42810' => 'bna', 'C09p39480' => 'bna', 'C09p63980' => 'bna', 'CAN.G1001.7' => 'can', 'CAN.G1034.55' => 'can', 'CAN.G143.7' => 'can', 'CAN.G3340.1' => 'can', 'CAN.G358.19' => 'can', 'CAN.G373.2' => 'can', 'CAN.G674.16' => 'can', 'CAN.G674.17' => 'can', 'CAN.G674.18' => 'can', 'CAN.G732.2' => 'can', 'CAN.G732.3' => 'can', 'CAN.G993.39' => 'can', 'CANSAT01G2052' => 'cansat', 'CANSAT80G0070' => 'cansat', 'CANSAT80G0483' => 'cansat', 'CANSAT80G0625' => 'cansat', 'CARHR019690' => 'chi', 'CARHR080280' => 'chi', 'CARHR152750' => 'chi', 'CARHR152760' => 'chi', 'CARHR152770' => 'chi', 'CARHR200340' => 'chi', 'CARHR232370' => 'chi', 'CARHR244670' => 'chi', 'CARHR244680' => 'chi', 'CARHR257520' => 'chi', 'Carub.0001s1872' => 'cru', 'Carub.0006s1130' => 'cru', 'Carub.0007s0396' => 'cru', 'Carub.0007s0397' => 'cru', 'Carub.0007s1608' => 'cru', 'Carub.0008s1068' => 'cru', 'Carub.0008s1077' => 'cru', 'Ca_16158_v3' => 'car', 'Ca_17571_v3' => 'car', 'Ca_21936_v3' => 'car', 'Ca_22350_v3' => 'car', 'CBR_g22445' => 'cbr', 'CBR_g26290' => 'cbr', 'Cc04_g09610' => 'ccan', 'Cc04_g12280' => 'ccan', 'Cc07_g10230' => 'ccan', 'CDE02G0093' => 'cde', 'CDE02G0701' => 'cde', 'CDE04G1050' => 'cde', 'CDE05G1833' => 'cde', 'CDE05G3058' => 'cde', 'CDE05G3380' => 'cde', 'CDE06G0536' => 'cde', 'Cfa006923' => 'cfa', 'Cfa009402' => 'cfa', 'Cfa018751' => 'cfa', 'Cfa019164' => 'cfa', 'Cfa022935' => 'cfa', 'Ciclev10019081m.g' => 'ccl', 'Ciclev10025076m.g' => 'ccl', 'Ciclev10030712m.g' => 'ccl', 'Ciclev10033760m.g' => 'ccl', 'CiPaw.05G105600' => 'cil', 'CiPaw.08G136700' => 'cil', 'CiPaw.11G003900' => 'cil', 'CiPaw.11G023700' => 'cil', 'CiPaw.12G003700' => 'cil', 'ClCG06G017100' => 'cla', 'ClCG06G018110' => 'cla', 'ClCG07G008800' => 'cla', 'ClCG07G015330' => 'cla', 'COL.COLO4_13698' => 'col', 'COL.COLO4_16659' => 'col', 'COL.COLO4_21986' => 'col', 'COL.COLO4_24049' => 'col', 'COL.COLO4_29061' => 'col', 'COL.COLO4_29075' => 'col', 'COL.COLO4_30094' => 'col', 'Cpa.g.c33689' => 'cpa', 'Cpa.g.sc108.39' => 'cpa', 'Cpa.g.sc108.41' => 'cpa', 'Cpa.g.sc1163.1' => 'cpa', 'Cpa.g.sc4.155' => 'cpa', 'Cpa.g.sc6.194' => 'cpa', 'CsaV3_1G000340' => 'csa', 'CsaV3_1G001400' => 'csa', 'CsaV3_4G002220' => 'csa', 'CsaV3_4G005370' => 'csa', 'CSS0007487' => 'camsi', 'CSS0008066' => 'camsi', 'CSS0009120' => 'camsi', 'CSS0015512' => 'camsi', 'CSS0022409' => 'camsi', 'CSS0025358' => 'camsi', 'CSS0044547' => 'camsi', 'DCAR_013057' => 'dca', 'DCAR_015058' => 'dca', 'DCAR_016027' => 'dca', 'DCAR_017327' => 'dca', 'DCAR_020743' => 'dca', 'DCAR_026157' => 'dca', 'DCAR_032339' => 'dca', 'DCAR_032340' => 'dca', 'Dinv11200' => 'din', 'Dinv11201' => 'din', 'Dinv20631' => 'din', 'Dinv23182' => 'din', 'Dinv33466' => 'din', 'Dinv33583' => 'din', 'Dinv38565' => 'din', 'Duzib068G0200' => 'dzi', 'Duzib147G0132' => 'dzi', 'Duzib147G0635' => 'dzi', 'Duzib205G1670' => 'dzi', 'Duzib251G0606' => 'dzi', 'ECA232G3336' => 'eca', 'ECA232G3763' => 'eca', 'ECA232G4845' => 'eca', 'ECA234G1607' => 'eca', 'ECA246G0932' => 'eca', 'ECA247G0781' => 'eca', 'ECA247G1932' => 'eca', 'ECA247G2079' => 'eca', 'ECA247G3338' => 'eca', 'ECA247G4115' => 'eca', 'EL10Ac3g06552' => 'bvu', 'EL10Ac5g10721' => 'bvu', 'EL10Ac5g10722' => 'bvu', 'EL10Ac5g10723' => 'bvu', 'EL10Ac5g11361' => 'bvu', 'EL10Ac6g13553' => 'bvu', 'EL10As8g23872' => 'bvu', 'Eucgr.B00250' => 'egr', 'Eucgr.B00251' => 'egr', 'Eucgr.B03533' => 'egr', 'Eucgr.I02381' => 'egr', 'Eucgr.K02700' => 'egr', 'FAN02G0174' => 'fan', 'FAN02G3146' => 'fan', 'FAN04G1672' => 'fan', 'FAN04G2273' => 'fan', 'FAN05G2791' => 'fan', 'FAN05G4035' => 'fan', 'FAN07G0834' => 'fan', 'FAN08G1198' => 'fan', 'FAN09G4182' => 'fan', 'FAN12G0496' => 'fan', 'FAN13G1027' => 'fan', 'FAN13G2951' => 'fan', 'FAN14G0705' => 'fan', 'FAN14G0720' => 'fan', 'FAN17G0201' => 'fan', 'FAN17G2665' => 'fan', 'FAN18G1456' => 'fan', 'FAN18G1525' => 'fan', 'FAN18G3500' => 'fan', 'FAN28G2670' => 'fan', 'FvH4_1g12391' => 'fve', 'FvH4_4g23220' => 'fve', 'FvH4_5g08810' => 'fve', 'FvH4_5g28960' => 'fve', 'FvH4_6g42820' => 'fve', 'FvH4_6g51110' => 'fve', 'Glyma.02G051802' => 'gma', 'Glyma.04G185300' => 'gma', 'Glyma.05G202900' => 'gma', 'Glyma.08G010300' => 'gma', 'Glyma.16G131900' => 'gma', 'Glyma.17G087900' => 'gma', 'Gohir.A07G048600' => 'ghi', 'Gohir.A11G179000' => 'ghi', 'Gohir.A12G140900' => 'ghi', 'Gohir.A12G140950' => 'ghi', 'Gohir.A12G191700' => 'ghi', 'Gohir.A13G086300' => 'ghi', 'Gohir.D07G052900' => 'ghi', 'Gohir.D11G186600' => 'ghi', 'Gohir.D12G145575' => 'ghi', 'Gohir.D12G145650' => 'ghi', 'Gohir.D12G145725' => 'ghi', 'Gohir.D12G194050' => 'ghi', 'Gohir.D13G091800' => 'ghi', 'Gorai.001G055900' => 'gra', 'Gorai.007G198400' => 'gra', 'Gorai.008G157000' => 'gra', 'Gorai.008G157100' => 'gra', 'Gorai.008G208700' => 'gra', 'Gorai.010G138700' => 'gra', 'GSVIVG01000977001' => 'vvi', 'GSVIVG01007708001' => 'vvi', 'GSVIVG01008587001' => 'vvi', 'GSVIVG01018849001' => 'vvi', 'GSVIVG01032432001' => 'vvi', 'HanXRQChr02g0034131' => 'han', 'HanXRQChr02g0035981' => 'han', 'HanXRQChr02g0035991' => 'han', 'HanXRQChr05g0155611' => 'han', 'HanXRQChr05g0155621' => 'han', 'HanXRQChr08g0236501' => 'han', 'HanXRQChr09g0261321' => 'han', 'HanXRQChr09g0272081' => 'han', 'HanXRQChr10g0310741' => 'han', 'HanXRQChr11g0325591' => 'han', 'HanXRQChr12g0385691' => 'han', 'HanXRQChr13g0387801' => 'han', 'HanXRQChr15g0463011' => 'han', 'Haze_03826' => 'cav', 'Haze_03827' => 'cav', 'Haze_07183' => 'cav', 'Haze_07537' => 'cav', 'Haze_07539' => 'cav', 'Haze_12461' => 'cav', 'Haze_16115' => 'cav', 'Haze_16808' => 'cav', 'Haze_18531' => 'cav', 'Hma1.2p1_0046F.1_g026700' => 'hma', 'Hma1.2p1_0046F.1_g026710' => 'hma', 'Hma1.2p1_0168F.1_g074340' => 'hma', 'Hma1.2p1_0266F.1_g107030' => 'hma', 'Hma1.2p1_0266F.1_g107060' => 'hma', 'Hma1.2p1_0275F.1_g110510' => 'hma', 'Hma1.2p1_0592F.1_g185490' => 'hma', 'Hma1.2p1_0592F.1_g185500' => 'hma', 'Hma1.2p1_0592F.1_g185510' => 'hma', 'Hma1.2p1_0592F.1_g185520' => 'hma', 'Hma1.2p1_0592F.1_g185530' => 'hma', 'Hma1.2p1_0818F.1_g223450' => 'hma', 'HPP92_009708' => 'vpl', 'HPP92_009793' => 'vpl', 'HPP92_009796' => 'vpl', 'HPP92_009797' => 'vpl', 'HPP92_014940' => 'vpl', 'HPP92_014988' => 'vpl', 'Hund02463' => 'sun', 'Hund02760' => 'sun', 'Hund05071' => 'sun', 'Hund10108' => 'sun', 'Hund11204' => 'sun', 'Hund14016' => 'sun', 'Hund16464' => 'sun', 'Lalb_Chr09g0333391' => 'lal', 'Lalb_Chr11g0070461' => 'lal', 'Lalb_Chr12g0201671' => 'lal', 'Lalb_Chr13g0297161' => 'lal', 'Lj1g0002823' => 'lja', 'Lj3C1074T6' => 'lonja', 'Lj4A212T28' => 'lonja', 'Lj4g0005516' => 'lja', 'Lj4g0013705' => 'lja', 'Lj4g0027865' => 'lja', 'Lj5C92G16' => 'lonja', 'Lj5C92T12' => 'lonja', 'Lj7C596T3' => 'lonja', 'Lj9A446G59' => 'lonja', 'Lj9A482G21' => 'lonja', 'Lsat_1_v5_gn_1_28261' => 'lsa', 'Lsat_1_v5_gn_1_28281' => 'lsa', 'Lsat_1_v5_gn_1_32721' => 'lsa', 'Lsat_1_v5_gn_4_151760' => 'lsa', 'Lsat_1_v5_gn_4_2120' => 'lsa', 'Lsat_1_v5_gn_4_75761' => 'lsa', 'Lsat_1_v5_gn_5_10920' => 'lsa', 'Manes.02G099900' => 'mes', 'Manes.11G096200' => 'mes', 'Manes.12G007200' => 'mes', 'Manes.14G048300' => 'mes', 'Manes.17G114700' => 'mes', 'Mapoly0002s0070' => 'mpo', 'Mapoly0029s0099' => 'mpo', 'MBI07_g24742_MAGBIO' => 'mbi', 'MBI10_g27988_MAGBIO' => 'mbi', 'MBI11_g13057_MAGBIO' => 'mbi', 'MD02G1137200' => 'mdo', 'MD06G1137200' => 'mdo', 'MD07G1122300' => 'mdo', 'MD09G1078200' => 'mdo', 'MD13G1123700' => 'mdo', 'MD14G1151900' => 'mdo', 'MD17G1030900' => 'mdo', 'MD17G1068200' => 'mdo', 'MD17G1068600' => 'mdo', 'Medtr3g077540' => 'mtr', 'Medtr4g105530' => 'mtr', 'Medtr8g076580' => 'mtr', 'Medtr8g076590' => 'mtr', 'Medtr8g096410' => 'mtr', 'MELO3C016411.2' => 'cme', 'MELO3C017780.2' => 'cme', 'MELO3C022560.2' => 'cme', 'MELO3C026187.2' => 'cme', 'MELO3C026286.2' => 'cme', 'MELO3C032854.2' => 'cme', 'Migut.H02495' => 'egut', 'Migut.I00561' => 'egut', 'Migut.K01015' => 'egut', 'Migut.K01016' => 'egut', 'Migut.L00743' => 'egut', 'Migut.L00744' => 'egut', 'Migut.L00746' => 'egut', 'Migut.L00798' => 'egut', 'Migut.L00799' => 'egut', 'Migut.N02096' => 'egut', 'MSTRG.11259' => 'ama', 'MSTRG.23142' => 'ama', 'MSTRG.2499' => 'ama', 'Nitab4.5_0000003g0730' => 'nta', 'Nitab4.5_0000137g0020' => 'nta', 'Nitab4.5_0000721g0210' => 'nta', 'Nitab4.5_0000723g0050' => 'nta', 'Nitab4.5_0000913g0070' => 'nta', 'Nitab4.5_0001332g0040' => 'nta', 'Nitab4.5_0001771g0050' => 'nta', 'Nitab4.5_0001918g0050' => 'nta', 'Nitab4.5_0002686g0030' => 'nta', 'Nitab4.5_0003156g0020' => 'nta', 'Nitab4.5_0003383g0040' => 'nta', 'Nitab4.5_0003918g0010' => 'nta', 'Nitab4.5_0006760g0010' => 'nta', 'Nn1g05981' => 'nnu', 'Nn1g06288' => 'nnu', 'Nn3g16371' => 'nnu', 'Nn3g16786' => 'nnu', 'Nn4g22232' => 'nnu', 'Oeu005144.1' => 'oeu', 'Oeu005145.1' => 'oeu', 'Oeu011348.1' => 'oeu', 'Oeu016415.1' => 'oeu', 'Oeu023501.1' => 'oeu', 'Oeu044473.1' => 'oeu', 'Oeu048892.2' => 'oeu', 'Os01g0549200' => 'osa', 'Os02g0469300' => 'osa', 'Os04g0311100' => 'osa', 'Os06g0474900' => 'osa', 'Os10g0181700' => 'osa', 'Os11g0454800' => 'osa', 'Peaxi162Scf00037g00714' => 'pax', 'Peaxi162Scf00084g01217' => 'pax', 'Peaxi162Scf00257g00217' => 'pax', 'Peaxi162Scf00516g00215' => 'pax', 'Peaxi162Scf00689g00123' => 'pax', 'PGR044G2719' => 'pgr', 'PGR083G1360' => 'pgr', 'PGR102G2849' => 'pgr', 'PGR119G2534' => 'pgr', 'PGSC0003DMG400003538' => 'stu', 'PGSC0003DMG400028138' => 'stu', 'PGSC0003DMG400031732' => 'stu', 'PGSC0003DMG400038165' => 'stu', 'Phvul.002G284600' => 'pvu', 'Phvul.003G258200' => 'pvu', 'Phvul.009G176500' => 'pvu', 'Potri.003G167201' => 'ptr', 'Potri.005G118400' => 'ptr', 'Potri.012G089000' => 'ptr', 'Potri.012G102800' => 'ptr', 'Potri.015G079400' => 'ptr', 'Potri.015G100900' => 'ptr', 'Pp3c14_9810' => 'ppa', 'Pp3c15_10450' => 'ppa', 'Pp3c20_19150' => 'ppa', 'Pp3c23_12740' => 'ppa', 'Pp3c23_6310' => 'ppa', 'Pp3c24_3720' => 'ppa', 'Pp3c27_2580' => 'ppa', 'Pp3c9_8990' => 'ppa', 'PRCOL_00002854' => 'pco', 'Prupe.1G221200' => 'ppe', 'Prupe.3G289000' => 'ppe', 'Prupe.5G147000' => 'ppe', 'Prupe.6G157300' => 'ppe', 'Prupe.7G163400' => 'ppe', 'Psat0s2177g0040' => 'psa', 'Psat3g174760' => 'psa', 'Psat3g192160' => 'psa', 'Psat4g058520' => 'psa', 'Psat4g096840' => 'psa', 'Psat7g037320' => 'psa', 'PSO017G1274' => 'pso', 'PSO017G5166' => 'pso', 'PSO063G4558' => 'pso', 'PSO170G4458' => 'pso', 'PSO170G5005' => 'pso', 'PSO210G6156' => 'pso', 'PSO210G6635' => 'pso', 'PSO210G7397' => 'pso', 'PSO210G7700' => 'pso', 'PSO455G0035' => 'pso', 'PSO455G0180' => 'pso', 'PSO478G4515' => 'pso', 'PSO832G1305' => 'pso', 'PSO832G3489' => 'pso', 'QL02p075247' => 'qlo', 'QL03p051148' => 'qlo', 'QL05p010313' => 'qlo', 'QL06p034627' => 'qlo', 'QL10p001889' => 'qlo', 'QL10p010846' => 'qlo', 'RcHm_v2.0_Chr1g0350621' => 'rch', 'RcHm_v2.0_Chr1g0350641' => 'rch', 'RcHm_v2.0_Chr2g0092891' => 'rch', 'RcHm_v2.0_Chr2g0100251' => 'rch', 'RcHm_v2.0_Chr2g0158661' => 'rch', 'RcHm_v2.0_Chr2g0172741' => 'rch', 'RcHm_v2.0_Chr4g0429571' => 'rch', 'RcHm_v2.0_Chr5g0042471' => 'rch', 'RcHm_v2.0_Chr7g0189451' => 'rch', 'Rhsim08G0052000' => 'rsi', 'Rhsim08G0174400' => 'rsi', 'Rhsim08G0193200' => 'rsi', 'Rhsim10G0214800' => 'rsi', 'Rhsim10G0214900' => 'rsi', 'Rhsim10G0215000' => 'rsi', 'Rhsim12G0022900' => 'rsi', 'Rhsim12G0177500' => 'rsi', 'Rhsim12G0177700' => 'rsi', 'Sabra03G0122600' => 'sbr', 'Sabra05G0097400' => 'sbr', 'Sabra12G0064100' => 'sbr', 'Sabra15G0121300' => 'sbr', 'SalBow2G0642' => 'sbo', 'SalBow5G2667' => 'sbo', 'SalBow5G4873' => 'sbo', 'SalBow8G2395' => 'sbo', 'Sc03g0003290' => 'sci', 'Sc10g0010130' => 'sci', 'Sc22g0003650' => 'sci', 'Sed0001603' => 'sed', 'Sed0004259' => 'sed', 'Sed0006789' => 'sed', 'Sed0011838' => 'sed', 'Sed0012964' => 'sed', 'Sed0016383' => 'sed', 'Sed0019010' => 'sed', 'Sed0020188' => 'sed', 'SEGI_04702' => 'sgi', 'SEGI_17231' => 'sgi', 'SEGI_18877' => 'sgi', 'SEGI_25196' => 'sgi', 'SEGI_25515' => 'sgi', 'SEGI_28445' => 'sgi', 'SEGI_37452' => 'sgi', 'SGA_v2.0_scaffold188G40336' => 'sas', 'SGA_v2.0_scaffold228G43247' => 'sas', 'SGA_v2.0_scaffold280G46853' => 'sas', 'SGA_v2.0_scaffold34G13808' => 'sas', 'SGA_v2.0_scaffold40G15576' => 'sas', 'SGA_v2.0_scaffold611G53188' => 'sas', 'SGA_v2.0_scaffold78G25461' => 'sas', 'SGA_v2.0_scaffold90G27888' => 'sas', 'SHI08601' => 'shi', 'SHI08606' => 'shi', 'SHI17117' => 'shi', 'SHI17119' => 'shi', 'SMO118G0201' => 'smo', 'SMO169G0247' => 'smo', 'SMO176G0006' => 'smo', 'SMO176G0015' => 'smo', 'SMO202G0006' => 'smo', 'SMO240G0050' => 'smo', 'SMO286G0009' => 'smo', 'SMO338G0033' => 'smo', 'SMO356G0533' => 'smo', 'SMO364G0382' => 'smo', 'SMO367G0166' => 'smo', 'SMO367G1098' => 'smo', 'Solyc01g009920.3' => 'sly', 'Solyc01g099300.3' => 'sly', 'Solyc02g084700.3' => 'sly', 'Solyc03g097520.3' => 'sly', 'Solyc06g071580.3' => 'sly', 'Solyc10g081760.3' => 'sly', 'Sopen01g005480' => 'spe', 'Sopen01g042850' => 'spe', 'Sopen02g029370' => 'spe', 'Sopen03g028280' => 'spe', 'Sopen06g027870' => 'spe', 'Sopen10g032270' => 'spe', 'Sp5g18180' => 'spa', 'Sp6g12880' => 'spa', 'Sp6g30850' => 'spa', 'Sp7g22960' => 'spa', 'Sp7g34010' => 'spa', 'SpUn1326_0010' => 'spa', 'TAR371G0242' => 'tar', 'TAR622G0638' => 'tar', 'TAR628G1548' => 'tar', 'TAR629G1079' => 'tar', 'TAR629G3413' => 'tar', 'THA.LOC104804249' => 'tha', 'THA.LOC104808315' => 'tha', 'THA.LOC104809238' => 'tha', 'THA.LOC104825484' => 'tha', 'Thecc.01G025500' => 'tca', 'Thecc.03G015800' => 'tca', 'Thecc.03G018000' => 'tca', 'Thecc.03G134800' => 'tca', 'Thecc.04G014700' => 'tca', 'Thhalv10006991m.g' => 'esa', 'Thhalv10012707m.g' => 'esa', 'Thhalv10015739m.g' => 'esa', 'Thhalv10024553m.g' => 'esa', 'Thhalv10024673m.g' => 'esa', 'Thhalv10029187m.g' => 'esa', 'TPR.G12971' => 'tpr', 'TPR.G29396' => 'tpr', 'TPR.G33376' => 'tpr', 'TPR.G35508' => 'tpr', 'TPR.G35516' => 'tpr', 'TPR.G37317' => 'tpr', 'TPR.G37389' => 'tpr', 'TPR.G37523' => 'tpr', 'TPR.G559' => 'tpr', 'TWI14G0070' => 'twi', 'TWI14G0729' => 'twi', 'TWI18G0596' => 'twi', 'TWI39G0780' => 'twi', 'TWI39G0850' => 'twi', 'TWI73G1052' => 'twi', 'unitig_52.g17485' => 'ugi', 'unitig_61.g26355' => 'ugi', 'vmacro01040' => 'vma', 'vmacro16731' => 'vma', 'vmacro18270' => 'vma', 'vmacro19142' => 'vma', 'vmacro19407' => 'vma', 'vmacro19408' => 'vma', 'vmacro21899' => 'vma', 'vmacro21900' => 'vma', 'vmacro21901' => 'vma', 'VMungo0251G0490' => 'vmu', 'VMungo0251G1748' => 'vmu', 'VMungo1309G0421' => 'vmu', 'Zm00001eb086500' => 'zma', 'Zm00001eb150680' => 'zma', 'Zm00001eb162330' => 'zma', 'Zm00001eb203130' => 'zma', 'Zm00001eb369480' => 'zma', 'Zm00001eb382340' => 'zma', 'Zm00001eb416360' => 'zma' ) $gf_id = 'HOM05D000902' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000902' ) $data_identifier = 'HOM05D000902' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 13, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 10, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 6, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 9, 'hma' => (int) 12, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 4, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 6, 'ppa' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 6, 'rch' => (int) 9, 'rsi' => (int) 9, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 12, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 3, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416360' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000902', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '663', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02470' => 'bna', 'A01p16260' => 'bna', 'A02p01680' => 'bna', 'A03p16600' => 'bna', 'A03p55660' => 'bna', 'A03p64160' => 'bna', 'A03p64170' => 'bna', 'A08p31900' => 'bna', 'A09p59530' => 'bna', 'A10p08230' => 'bna', 'A10p25090' => 'bna', 'Aa31LG3G7100' => 'aar', 'Aa31LG3G7110' => 'aar', 'Aa31LG6G13160' => 'aar', 'Aa31LG7G10770' => 'aar', 'Aa31LG7G3830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2723' => 'aag', 'Actinidia08045' => 'ach', 'Actinidia08888' => 'ach', 'Actinidia18333' => 'ach', 'Actinidia19334' => 'ach', 'Actinidia25552' => 'ach', 'Actinidia26089' => 'ach', 'Actinidia30615' => 'ach', 'Actinidia30616' => 'ach', 'Actinidia33083' => 'ach', 'Actinidia35762' => 'ach', 'Ah.02g110620' => 'amhyb', 'Ah.11g046390' => 'amhyb', 'AL1G31670' => 'aly', 'AL6G23730' => 'aly', 'AL7G14740' => 'aly', 'AL7G14750' => 'aly', 'AL7G14760' => 'aly', 'AL7G28220' => 'aly', 'AL8G24940' => 'aly', 'Aqoxy3G01665' => 'aox', 'Aqoxy3G02853' => 'aox', 'Aqoxy5G01513' => 'aox', 'Aqoxy5G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8SKA4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ75LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKDA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0LJZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7REX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZP4YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWX7I5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2QKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS0L9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPCD8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q161UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC7XCF' => 'arhy', 'AT1G19100' => 'ath', 'AT4G24970' => 'ath', 'AT4G36270' => 'ath', 'AT4G36280' => 'ath', 'AT4G36290' => 'ath', 'AT5G13130' => 'ath', 'AT5G50780' => 'ath', 'ATR0582G266' => 'atr', 'ATR0661G195' => 'atr', 'ATR1152G031' => 'atr', 'Atru.chr11.2382' => 'acertr', 'Atru.chr12.2337' => 'acertr', 'Atru.chr3.744' => 'acertr', 'Atru.chr6.1870' => 'acertr', 'Atru.chr9.2515' => 'acertr', 'AUR62004120' => 'cqu', 'AUR62005667' => 'cqu', 'AUR62007634' => 'cqu', 'AUR62008186' => 'cqu', 'AUR62008187' => 'cqu', 'AUR62008188' => 'cqu', 'AUR62027954' => 'cqu', 'AUR62028766' => 'cqu', 'AUR62028767' => 'cqu', 'AUR62028768' => 'cqu', 'AUR62028886' => 'cqu', 'AUR62029563' => 'cqu', 'AUR62038832' => 'cqu', 'BcaB01g04149' => 'bca', 'BcaB03g12940' => 'bca', 'BcaB03g13090' => 'bca', 'BcaB03g14466' => 'bca', 'BcaB05g24035' => 'bca', 'BcaC01g06050' => 'bca', 'BcaC04g19148' => 'bca', 'BcaC04g20761' => 'bca', 'BcaC06g32845' => 'bca', 'BcaC07g41274' => 'bca', 'BcaC09g50827' => 'bca', 'BcaNung00741' => 'bca', 'BcaNung00742' => 'bca', 'BcaNung01859' => 'bca', 'BcaNung03985' => 'bca', 'BcaNung03989' => 'bca', 'BcaNung05661' => 'bca', 'BolC1t00257H' => 'bol', 'BolC1t01956H' => 'bol', 'BolC2t06534H' => 'bol', 'BolC3t14334H' => 'bol', 'BolC5t30451H' => 'bol', 'BolC7t45880H' => 'bol', 'BolC7t46586H' => 'bol', 'BolC8t49301H' => 'bol', 'BolC8t51837H' => 'bol', 'BolC9t56822H' => 'bol', 'BolC9t59235H' => 'bol', 'BraA01t00234Z' => 'bra', 'BraA01t01563Z' => 'bra', 'BraA02t05147Z' => 'bra', 'BraA03t10947Z' => 'bra', 'BraA03t14633Z' => 'bra', 'BraA08t35112Z' => 'bra', 'BraA09t41330Z' => 'bra', 'BraA10t44570Z' => 'bra', 'C01p02670' => 'bna', 'C01p20260' => 'bna', 'C02p05890' => 'bna', 'C03p19530' => 'bna', 'C05p17470' => 'bna', 'C07p53900' => 'bna', 'C07p61630' => 'bna', 'C08p16800' => 'bna', 'C08p42810' => 'bna', 'C09p39480' => 'bna', 'C09p63980' => 'bna', 'CAN.G1001.7' => 'can', 'CAN.G1034.55' => 'can', 'CAN.G143.7' => 'can', 'CAN.G3340.1' => 'can', 'CAN.G358.19' => 'can', 'CAN.G373.2' => 'can', 'CAN.G674.16' => 'can', 'CAN.G674.17' => 'can', 'CAN.G674.18' => 'can', 'CAN.G732.2' => 'can', 'CAN.G732.3' => 'can', 'CAN.G993.39' => 'can', 'CANSAT01G2052' => 'cansat', 'CANSAT80G0070' => 'cansat', 'CANSAT80G0483' => 'cansat', 'CANSAT80G0625' => 'cansat', 'CARHR019690' => 'chi', 'CARHR080280' => 'chi', 'CARHR152750' => 'chi', 'CARHR152760' => 'chi', 'CARHR152770' => 'chi', 'CARHR200340' => 'chi', 'CARHR232370' => 'chi', 'CARHR244670' => 'chi', 'CARHR244680' => 'chi', 'CARHR257520' => 'chi', 'Carub.0001s1872' => 'cru', 'Carub.0006s1130' => 'cru', 'Carub.0007s0396' => 'cru', 'Carub.0007s0397' => 'cru', 'Carub.0007s1608' => 'cru', 'Carub.0008s1068' => 'cru', 'Carub.0008s1077' => 'cru', 'Ca_16158_v3' => 'car', 'Ca_17571_v3' => 'car', 'Ca_21936_v3' => 'car', 'Ca_22350_v3' => 'car', 'CBR_g22445' => 'cbr', 'CBR_g26290' => 'cbr', 'Cc04_g09610' => 'ccan', 'Cc04_g12280' => 'ccan', 'Cc07_g10230' => 'ccan', 'CDE02G0093' => 'cde', 'CDE02G0701' => 'cde', 'CDE04G1050' => 'cde', 'CDE05G1833' => 'cde', 'CDE05G3058' => 'cde', 'CDE05G3380' => 'cde', 'CDE06G0536' => 'cde', 'Cfa006923' => 'cfa', 'Cfa009402' => 'cfa', 'Cfa018751' => 'cfa', 'Cfa019164' => 'cfa', 'Cfa022935' => 'cfa', 'Ciclev10019081m.g' => 'ccl', 'Ciclev10025076m.g' => 'ccl', 'Ciclev10030712m.g' => 'ccl', 'Ciclev10033760m.g' => 'ccl', 'CiPaw.05G105600' => 'cil', 'CiPaw.08G136700' => 'cil', 'CiPaw.11G003900' => 'cil', 'CiPaw.11G023700' => 'cil', 'CiPaw.12G003700' => 'cil', 'ClCG06G017100' => 'cla', 'ClCG06G018110' => 'cla', 'ClCG07G008800' => 'cla', 'ClCG07G015330' => 'cla', 'COL.COLO4_13698' => 'col', 'COL.COLO4_16659' => 'col', 'COL.COLO4_21986' => 'col', 'COL.COLO4_24049' => 'col', 'COL.COLO4_29061' => 'col', 'COL.COLO4_29075' => 'col', 'COL.COLO4_30094' => 'col', 'Cpa.g.c33689' => 'cpa', 'Cpa.g.sc108.39' => 'cpa', 'Cpa.g.sc108.41' => 'cpa', 'Cpa.g.sc1163.1' => 'cpa', 'Cpa.g.sc4.155' => 'cpa', 'Cpa.g.sc6.194' => 'cpa', 'CsaV3_1G000340' => 'csa', 'CsaV3_1G001400' => 'csa', 'CsaV3_4G002220' => 'csa', 'CsaV3_4G005370' => 'csa', 'CSS0007487' => 'camsi', 'CSS0008066' => 'camsi', 'CSS0009120' => 'camsi', 'CSS0015512' => 'camsi', 'CSS0022409' => 'camsi', 'CSS0025358' => 'camsi', 'CSS0044547' => 'camsi', 'DCAR_013057' => 'dca', 'DCAR_015058' => 'dca', 'DCAR_016027' => 'dca', 'DCAR_017327' => 'dca', 'DCAR_020743' => 'dca', 'DCAR_026157' => 'dca', 'DCAR_032339' => 'dca', 'DCAR_032340' => 'dca', 'Dinv11200' => 'din', 'Dinv11201' => 'din', 'Dinv20631' => 'din', 'Dinv23182' => 'din', 'Dinv33466' => 'din', 'Dinv33583' => 'din', 'Dinv38565' => 'din', 'Duzib068G0200' => 'dzi', 'Duzib147G0132' => 'dzi', 'Duzib147G0635' => 'dzi', 'Duzib205G1670' => 'dzi', 'Duzib251G0606' => 'dzi', 'ECA232G3336' => 'eca', 'ECA232G3763' => 'eca', 'ECA232G4845' => 'eca', 'ECA234G1607' => 'eca', 'ECA246G0932' => 'eca', 'ECA247G0781' => 'eca', 'ECA247G1932' => 'eca', 'ECA247G2079' => 'eca', 'ECA247G3338' => 'eca', 'ECA247G4115' => 'eca', 'EL10Ac3g06552' => 'bvu', 'EL10Ac5g10721' => 'bvu', 'EL10Ac5g10722' => 'bvu', 'EL10Ac5g10723' => 'bvu', 'EL10Ac5g11361' => 'bvu', 'EL10Ac6g13553' => 'bvu', 'EL10As8g23872' => 'bvu', 'Eucgr.B00250' => 'egr', 'Eucgr.B00251' => 'egr', 'Eucgr.B03533' => 'egr', 'Eucgr.I02381' => 'egr', 'Eucgr.K02700' => 'egr', 'FAN02G0174' => 'fan', 'FAN02G3146' => 'fan', 'FAN04G1672' => 'fan', 'FAN04G2273' => 'fan', 'FAN05G2791' => 'fan', 'FAN05G4035' => 'fan', 'FAN07G0834' => 'fan', 'FAN08G1198' => 'fan', 'FAN09G4182' => 'fan', 'FAN12G0496' => 'fan', 'FAN13G1027' => 'fan', 'FAN13G2951' => 'fan', 'FAN14G0705' => 'fan', 'FAN14G0720' => 'fan', 'FAN17G0201' => 'fan', 'FAN17G2665' => 'fan', 'FAN18G1456' => 'fan', 'FAN18G1525' => 'fan', 'FAN18G3500' => 'fan', 'FAN28G2670' => 'fan', 'FvH4_1g12391' => 'fve', 'FvH4_4g23220' => 'fve', 'FvH4_5g08810' => 'fve', 'FvH4_5g28960' => 'fve', 'FvH4_6g42820' => 'fve', 'FvH4_6g51110' => 'fve', 'Glyma.02G051802' => 'gma', 'Glyma.04G185300' => 'gma', 'Glyma.05G202900' => 'gma', 'Glyma.08G010300' => 'gma', 'Glyma.16G131900' => 'gma', 'Glyma.17G087900' => 'gma', 'Gohir.A07G048600' => 'ghi', 'Gohir.A11G179000' => 'ghi', 'Gohir.A12G140900' => 'ghi', 'Gohir.A12G140950' => 'ghi', 'Gohir.A12G191700' => 'ghi', 'Gohir.A13G086300' => 'ghi', 'Gohir.D07G052900' => 'ghi', 'Gohir.D11G186600' => 'ghi', 'Gohir.D12G145575' => 'ghi', 'Gohir.D12G145650' => 'ghi', 'Gohir.D12G145725' => 'ghi', 'Gohir.D12G194050' => 'ghi', 'Gohir.D13G091800' => 'ghi', 'Gorai.001G055900' => 'gra', 'Gorai.007G198400' => 'gra', 'Gorai.008G157000' => 'gra', 'Gorai.008G157100' => 'gra', 'Gorai.008G208700' => 'gra', 'Gorai.010G138700' => 'gra', 'GSVIVG01000977001' => 'vvi', 'GSVIVG01007708001' => 'vvi', 'GSVIVG01008587001' => 'vvi', 'GSVIVG01018849001' => 'vvi', 'GSVIVG01032432001' => 'vvi', 'HanXRQChr02g0034131' => 'han', 'HanXRQChr02g0035981' => 'han', 'HanXRQChr02g0035991' => 'han', 'HanXRQChr05g0155611' => 'han', 'HanXRQChr05g0155621' => 'han', 'HanXRQChr08g0236501' => 'han', 'HanXRQChr09g0261321' => 'han', 'HanXRQChr09g0272081' => 'han', 'HanXRQChr10g0310741' => 'han', 'HanXRQChr11g0325591' => 'han', 'HanXRQChr12g0385691' => 'han', 'HanXRQChr13g0387801' => 'han', 'HanXRQChr15g0463011' => 'han', 'Haze_03826' => 'cav', 'Haze_03827' => 'cav', 'Haze_07183' => 'cav', 'Haze_07537' => 'cav', 'Haze_07539' => 'cav', 'Haze_12461' => 'cav', 'Haze_16115' => 'cav', 'Haze_16808' => 'cav', 'Haze_18531' => 'cav', 'Hma1.2p1_0046F.1_g026700' => 'hma', 'Hma1.2p1_0046F.1_g026710' => 'hma', 'Hma1.2p1_0168F.1_g074340' => 'hma', 'Hma1.2p1_0266F.1_g107030' => 'hma', 'Hma1.2p1_0266F.1_g107060' => 'hma', 'Hma1.2p1_0275F.1_g110510' => 'hma', 'Hma1.2p1_0592F.1_g185490' => 'hma', 'Hma1.2p1_0592F.1_g185500' => 'hma', 'Hma1.2p1_0592F.1_g185510' => 'hma', 'Hma1.2p1_0592F.1_g185520' => 'hma', 'Hma1.2p1_0592F.1_g185530' => 'hma', 'Hma1.2p1_0818F.1_g223450' => 'hma', 'HPP92_009708' => 'vpl', 'HPP92_009793' => 'vpl', 'HPP92_009796' => 'vpl', 'HPP92_009797' => 'vpl', 'HPP92_014940' => 'vpl', 'HPP92_014988' => 'vpl', 'Hund02463' => 'sun', 'Hund02760' => 'sun', 'Hund05071' => 'sun', 'Hund10108' => 'sun', 'Hund11204' => 'sun', 'Hund14016' => 'sun', 'Hund16464' => 'sun', 'Lalb_Chr09g0333391' => 'lal', 'Lalb_Chr11g0070461' => 'lal', 'Lalb_Chr12g0201671' => 'lal', 'Lalb_Chr13g0297161' => 'lal', 'Lj1g0002823' => 'lja', 'Lj3C1074T6' => 'lonja', 'Lj4A212T28' => 'lonja', 'Lj4g0005516' => 'lja', 'Lj4g0013705' => 'lja', 'Lj4g0027865' => 'lja', 'Lj5C92G16' => 'lonja', 'Lj5C92T12' => 'lonja', 'Lj7C596T3' => 'lonja', 'Lj9A446G59' => 'lonja', 'Lj9A482G21' => 'lonja', 'Lsat_1_v5_gn_1_28261' => 'lsa', 'Lsat_1_v5_gn_1_28281' => 'lsa', 'Lsat_1_v5_gn_1_32721' => 'lsa', 'Lsat_1_v5_gn_4_151760' => 'lsa', 'Lsat_1_v5_gn_4_2120' => 'lsa', 'Lsat_1_v5_gn_4_75761' => 'lsa', 'Lsat_1_v5_gn_5_10920' => 'lsa', 'Manes.02G099900' => 'mes', 'Manes.11G096200' => 'mes', 'Manes.12G007200' => 'mes', 'Manes.14G048300' => 'mes', 'Manes.17G114700' => 'mes', 'Mapoly0002s0070' => 'mpo', 'Mapoly0029s0099' => 'mpo', 'MBI07_g24742_MAGBIO' => 'mbi', 'MBI10_g27988_MAGBIO' => 'mbi', 'MBI11_g13057_MAGBIO' => 'mbi', 'MD02G1137200' => 'mdo', 'MD06G1137200' => 'mdo', 'MD07G1122300' => 'mdo', 'MD09G1078200' => 'mdo', 'MD13G1123700' => 'mdo', 'MD14G1151900' => 'mdo', 'MD17G1030900' => 'mdo', 'MD17G1068200' => 'mdo', 'MD17G1068600' => 'mdo', 'Medtr3g077540' => 'mtr', 'Medtr4g105530' => 'mtr', 'Medtr8g076580' => 'mtr', 'Medtr8g076590' => 'mtr', 'Medtr8g096410' => 'mtr', 'MELO3C016411.2' => 'cme', 'MELO3C017780.2' => 'cme', 'MELO3C022560.2' => 'cme', 'MELO3C026187.2' => 'cme', 'MELO3C026286.2' => 'cme', 'MELO3C032854.2' => 'cme', 'Migut.H02495' => 'egut', 'Migut.I00561' => 'egut', 'Migut.K01015' => 'egut', 'Migut.K01016' => 'egut', 'Migut.L00743' => 'egut', 'Migut.L00744' => 'egut', 'Migut.L00746' => 'egut', 'Migut.L00798' => 'egut', 'Migut.L00799' => 'egut', 'Migut.N02096' => 'egut', 'MSTRG.11259' => 'ama', 'MSTRG.23142' => 'ama', 'MSTRG.2499' => 'ama', 'Nitab4.5_0000003g0730' => 'nta', 'Nitab4.5_0000137g0020' => 'nta', 'Nitab4.5_0000721g0210' => 'nta', 'Nitab4.5_0000723g0050' => 'nta', 'Nitab4.5_0000913g0070' => 'nta', 'Nitab4.5_0001332g0040' => 'nta', 'Nitab4.5_0001771g0050' => 'nta', 'Nitab4.5_0001918g0050' => 'nta', 'Nitab4.5_0002686g0030' => 'nta', 'Nitab4.5_0003156g0020' => 'nta', 'Nitab4.5_0003383g0040' => 'nta', 'Nitab4.5_0003918g0010' => 'nta', 'Nitab4.5_0006760g0010' => 'nta', 'Nn1g05981' => 'nnu', 'Nn1g06288' => 'nnu', 'Nn3g16371' => 'nnu', 'Nn3g16786' => 'nnu', 'Nn4g22232' => 'nnu', 'Oeu005144.1' => 'oeu', 'Oeu005145.1' => 'oeu', 'Oeu011348.1' => 'oeu', 'Oeu016415.1' => 'oeu', 'Oeu023501.1' => 'oeu', 'Oeu044473.1' => 'oeu', 'Oeu048892.2' => 'oeu', 'Os01g0549200' => 'osa', 'Os02g0469300' => 'osa', 'Os04g0311100' => 'osa', 'Os06g0474900' => 'osa', 'Os10g0181700' => 'osa', 'Os11g0454800' => 'osa', 'Peaxi162Scf00037g00714' => 'pax', 'Peaxi162Scf00084g01217' => 'pax', 'Peaxi162Scf00257g00217' => 'pax', 'Peaxi162Scf00516g00215' => 'pax', 'Peaxi162Scf00689g00123' => 'pax', 'PGR044G2719' => 'pgr', 'PGR083G1360' => 'pgr', 'PGR102G2849' => 'pgr', 'PGR119G2534' => 'pgr', 'PGSC0003DMG400003538' => 'stu', 'PGSC0003DMG400028138' => 'stu', 'PGSC0003DMG400031732' => 'stu', 'PGSC0003DMG400038165' => 'stu', 'Phvul.002G284600' => 'pvu', 'Phvul.003G258200' => 'pvu', 'Phvul.009G176500' => 'pvu', 'Potri.003G167201' => 'ptr', 'Potri.005G118400' => 'ptr', 'Potri.012G089000' => 'ptr', 'Potri.012G102800' => 'ptr', 'Potri.015G079400' => 'ptr', 'Potri.015G100900' => 'ptr', 'Pp3c14_9810' => 'ppa', 'Pp3c15_10450' => 'ppa', 'Pp3c20_19150' => 'ppa', 'Pp3c23_12740' => 'ppa', 'Pp3c23_6310' => 'ppa', 'Pp3c24_3720' => 'ppa', 'Pp3c27_2580' => 'ppa', 'Pp3c9_8990' => 'ppa', 'PRCOL_00002854' => 'pco', 'Prupe.1G221200' => 'ppe', 'Prupe.3G289000' => 'ppe', 'Prupe.5G147000' => 'ppe', 'Prupe.6G157300' => 'ppe', 'Prupe.7G163400' => 'ppe', 'Psat0s2177g0040' => 'psa', 'Psat3g174760' => 'psa', 'Psat3g192160' => 'psa', 'Psat4g058520' => 'psa', 'Psat4g096840' => 'psa', 'Psat7g037320' => 'psa', 'PSO017G1274' => 'pso', 'PSO017G5166' => 'pso', 'PSO063G4558' => 'pso', 'PSO170G4458' => 'pso', 'PSO170G5005' => 'pso', 'PSO210G6156' => 'pso', 'PSO210G6635' => 'pso', 'PSO210G7397' => 'pso', 'PSO210G7700' => 'pso', 'PSO455G0035' => 'pso', 'PSO455G0180' => 'pso', 'PSO478G4515' => 'pso', 'PSO832G1305' => 'pso', 'PSO832G3489' => 'pso', 'QL02p075247' => 'qlo', 'QL03p051148' => 'qlo', 'QL05p010313' => 'qlo', 'QL06p034627' => 'qlo', 'QL10p001889' => 'qlo', 'QL10p010846' => 'qlo', 'RcHm_v2.0_Chr1g0350621' => 'rch', 'RcHm_v2.0_Chr1g0350641' => 'rch', 'RcHm_v2.0_Chr2g0092891' => 'rch', 'RcHm_v2.0_Chr2g0100251' => 'rch', 'RcHm_v2.0_Chr2g0158661' => 'rch', 'RcHm_v2.0_Chr2g0172741' => 'rch', 'RcHm_v2.0_Chr4g0429571' => 'rch', 'RcHm_v2.0_Chr5g0042471' => 'rch', 'RcHm_v2.0_Chr7g0189451' => 'rch', 'Rhsim08G0052000' => 'rsi', 'Rhsim08G0174400' => 'rsi', 'Rhsim08G0193200' => 'rsi', 'Rhsim10G0214800' => 'rsi', 'Rhsim10G0214900' => 'rsi', 'Rhsim10G0215000' => 'rsi', 'Rhsim12G0022900' => 'rsi', 'Rhsim12G0177500' => 'rsi', 'Rhsim12G0177700' => 'rsi', 'Sabra03G0122600' => 'sbr', 'Sabra05G0097400' => 'sbr', 'Sabra12G0064100' => 'sbr', 'Sabra15G0121300' => 'sbr', 'SalBow2G0642' => 'sbo', 'SalBow5G2667' => 'sbo', 'SalBow5G4873' => 'sbo', 'SalBow8G2395' => 'sbo', 'Sc03g0003290' => 'sci', 'Sc10g0010130' => 'sci', 'Sc22g0003650' => 'sci', 'Sed0001603' => 'sed', 'Sed0004259' => 'sed', 'Sed0006789' => 'sed', 'Sed0011838' => 'sed', 'Sed0012964' => 'sed', 'Sed0016383' => 'sed', 'Sed0019010' => 'sed', 'Sed0020188' => 'sed', 'SEGI_04702' => 'sgi', 'SEGI_17231' => 'sgi', 'SEGI_18877' => 'sgi', 'SEGI_25196' => 'sgi', 'SEGI_25515' => 'sgi', 'SEGI_28445' => 'sgi', 'SEGI_37452' => 'sgi', 'SGA_v2.0_scaffold188G40336' => 'sas', 'SGA_v2.0_scaffold228G43247' => 'sas', 'SGA_v2.0_scaffold280G46853' => 'sas', 'SGA_v2.0_scaffold34G13808' => 'sas', 'SGA_v2.0_scaffold40G15576' => 'sas', 'SGA_v2.0_scaffold611G53188' => 'sas', 'SGA_v2.0_scaffold78G25461' => 'sas', 'SGA_v2.0_scaffold90G27888' => 'sas', 'SHI08601' => 'shi', 'SHI08606' => 'shi', 'SHI17117' => 'shi', 'SHI17119' => 'shi', 'SMO118G0201' => 'smo', 'SMO169G0247' => 'smo', 'SMO176G0006' => 'smo', 'SMO176G0015' => 'smo', 'SMO202G0006' => 'smo', 'SMO240G0050' => 'smo', 'SMO286G0009' => 'smo', 'SMO338G0033' => 'smo', 'SMO356G0533' => 'smo', 'SMO364G0382' => 'smo', 'SMO367G0166' => 'smo', 'SMO367G1098' => 'smo', 'Solyc01g009920.3' => 'sly', 'Solyc01g099300.3' => 'sly', 'Solyc02g084700.3' => 'sly', 'Solyc03g097520.3' => 'sly', 'Solyc06g071580.3' => 'sly', 'Solyc10g081760.3' => 'sly', 'Sopen01g005480' => 'spe', 'Sopen01g042850' => 'spe', 'Sopen02g029370' => 'spe', 'Sopen03g028280' => 'spe', 'Sopen06g027870' => 'spe', 'Sopen10g032270' => 'spe', 'Sp5g18180' => 'spa', 'Sp6g12880' => 'spa', 'Sp6g30850' => 'spa', 'Sp7g22960' => 'spa', 'Sp7g34010' => 'spa', 'SpUn1326_0010' => 'spa', 'TAR371G0242' => 'tar', 'TAR622G0638' => 'tar', 'TAR628G1548' => 'tar', 'TAR629G1079' => 'tar', 'TAR629G3413' => 'tar', 'THA.LOC104804249' => 'tha', 'THA.LOC104808315' => 'tha', 'THA.LOC104809238' => 'tha', 'THA.LOC104825484' => 'tha', 'Thecc.01G025500' => 'tca', 'Thecc.03G015800' => 'tca', 'Thecc.03G018000' => 'tca', 'Thecc.03G134800' => 'tca', 'Thecc.04G014700' => 'tca', 'Thhalv10006991m.g' => 'esa', 'Thhalv10012707m.g' => 'esa', 'Thhalv10015739m.g' => 'esa', 'Thhalv10024553m.g' => 'esa', 'Thhalv10024673m.g' => 'esa', 'Thhalv10029187m.g' => 'esa', 'TPR.G12971' => 'tpr', 'TPR.G29396' => 'tpr', 'TPR.G33376' => 'tpr', 'TPR.G35508' => 'tpr', 'TPR.G35516' => 'tpr', 'TPR.G37317' => 'tpr', 'TPR.G37389' => 'tpr', 'TPR.G37523' => 'tpr', 'TPR.G559' => 'tpr', 'TWI14G0070' => 'twi', 'TWI14G0729' => 'twi', 'TWI18G0596' => 'twi', 'TWI39G0780' => 'twi', 'TWI39G0850' => 'twi', 'TWI73G1052' => 'twi', 'unitig_52.g17485' => 'ugi', 'unitig_61.g26355' => 'ugi', 'vmacro01040' => 'vma', 'vmacro16731' => 'vma', 'vmacro18270' => 'vma', 'vmacro19142' => 'vma', 'vmacro19407' => 'vma', 'vmacro19408' => 'vma', 'vmacro21899' => 'vma', 'vmacro21900' => 'vma', 'vmacro21901' => 'vma', 'VMungo0251G0490' => 'vmu', 'VMungo0251G1748' => 'vmu', 'VMungo1309G0421' => 'vmu', 'Zm00001eb086500' => 'zma', 'Zm00001eb150680' => 'zma', 'Zm00001eb162330' => 'zma', 'Zm00001eb203130' => 'zma', 'Zm00001eb369480' => 'zma', 'Zm00001eb382340' => 'zma', 'Zm00001eb416360' => 'zma' ), 'gf_id' => 'HOM05D000902', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000902' ), 'data_identifier' => 'HOM05D000902', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000902', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '663', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02470' => 'bna', 'A01p16260' => 'bna', 'A02p01680' => 'bna', 'A03p16600' => 'bna', 'A03p55660' => 'bna', 'A03p64160' => 'bna', 'A03p64170' => 'bna', 'A08p31900' => 'bna', 'A09p59530' => 'bna', 'A10p08230' => 'bna', 'A10p25090' => 'bna', 'Aa31LG3G7100' => 'aar', 'Aa31LG3G7110' => 'aar', 'Aa31LG6G13160' => 'aar', 'Aa31LG7G10770' => 'aar', 'Aa31LG7G3830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2723' => 'aag', 'Actinidia08045' => 'ach', 'Actinidia08888' => 'ach', 'Actinidia18333' => 'ach', 'Actinidia19334' => 'ach', 'Actinidia25552' => 'ach', 'Actinidia26089' => 'ach', 'Actinidia30615' => 'ach', 'Actinidia30616' => 'ach', 'Actinidia33083' => 'ach', 'Actinidia35762' => 'ach', 'Ah.02g110620' => 'amhyb', 'Ah.11g046390' => 'amhyb', 'AL1G31670' => 'aly', 'AL6G23730' => 'aly', 'AL7G14740' => 'aly', 'AL7G14750' => 'aly', 'AL7G14760' => 'aly', 'AL7G28220' => 'aly', 'AL8G24940' => 'aly', 'Aqoxy3G01665' => 'aox', 'Aqoxy3G02853' => 'aox', 'Aqoxy5G01513' => 'aox', 'Aqoxy5G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8SKA4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ75LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKDA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0LJZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7REX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZP4YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWX7I5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2QKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS0L9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPCD8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q161UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC7XCF' => 'arhy', 'AT1G19100' => 'ath', 'AT4G24970' => 'ath', 'AT4G36270' => 'ath', 'AT4G36280' => 'ath', 'AT4G36290' => 'ath', 'AT5G13130' => 'ath', 'AT5G50780' => 'ath', 'ATR0582G266' => 'atr', 'ATR0661G195' => 'atr', 'ATR1152G031' => 'atr', 'Atru.chr11.2382' => 'acertr', 'Atru.chr12.2337' => 'acertr', 'Atru.chr3.744' => 'acertr', 'Atru.chr6.1870' => 'acertr', 'Atru.chr9.2515' => 'acertr', 'AUR62004120' => 'cqu', 'AUR62005667' => 'cqu', 'AUR62007634' => 'cqu', 'AUR62008186' => 'cqu', 'AUR62008187' => 'cqu', 'AUR62008188' => 'cqu', 'AUR62027954' => 'cqu', 'AUR62028766' => 'cqu', 'AUR62028767' => 'cqu', 'AUR62028768' => 'cqu', 'AUR62028886' => 'cqu', 'AUR62029563' => 'cqu', 'AUR62038832' => 'cqu', 'BcaB01g04149' => 'bca', 'BcaB03g12940' => 'bca', 'BcaB03g13090' => 'bca', 'BcaB03g14466' => 'bca', 'BcaB05g24035' => 'bca', 'BcaC01g06050' => 'bca', 'BcaC04g19148' => 'bca', 'BcaC04g20761' => 'bca', 'BcaC06g32845' => 'bca', 'BcaC07g41274' => 'bca', 'BcaC09g50827' => 'bca', 'BcaNung00741' => 'bca', 'BcaNung00742' => 'bca', 'BcaNung01859' => 'bca', 'BcaNung03985' => 'bca', 'BcaNung03989' => 'bca', 'BcaNung05661' => 'bca', 'BolC1t00257H' => 'bol', 'BolC1t01956H' => 'bol', 'BolC2t06534H' => 'bol', 'BolC3t14334H' => 'bol', 'BolC5t30451H' => 'bol', 'BolC7t45880H' => 'bol', 'BolC7t46586H' => 'bol', 'BolC8t49301H' => 'bol', 'BolC8t51837H' => 'bol', 'BolC9t56822H' => 'bol', 'BolC9t59235H' => 'bol', 'BraA01t00234Z' => 'bra', 'BraA01t01563Z' => 'bra', 'BraA02t05147Z' => 'bra', 'BraA03t10947Z' => 'bra', 'BraA03t14633Z' => 'bra', 'BraA08t35112Z' => 'bra', 'BraA09t41330Z' => 'bra', 'BraA10t44570Z' => 'bra', 'C01p02670' => 'bna', 'C01p20260' => 'bna', 'C02p05890' => 'bna', 'C03p19530' => 'bna', 'C05p17470' => 'bna', 'C07p53900' => 'bna', 'C07p61630' => 'bna', 'C08p16800' => 'bna', 'C08p42810' => 'bna', 'C09p39480' => 'bna', 'C09p63980' => 'bna', 'CAN.G1001.7' => 'can', 'CAN.G1034.55' => 'can', 'CAN.G143.7' => 'can', 'CAN.G3340.1' => 'can', 'CAN.G358.19' => 'can', 'CAN.G373.2' => 'can', 'CAN.G674.16' => 'can', 'CAN.G674.17' => 'can', 'CAN.G674.18' => 'can', 'CAN.G732.2' => 'can', 'CAN.G732.3' => 'can', 'CAN.G993.39' => 'can', 'CANSAT01G2052' => 'cansat', 'CANSAT80G0070' => 'cansat', 'CANSAT80G0483' => 'cansat', 'CANSAT80G0625' => 'cansat', 'CARHR019690' => 'chi', 'CARHR080280' => 'chi', 'CARHR152750' => 'chi', 'CARHR152760' => 'chi', 'CARHR152770' => 'chi', 'CARHR200340' => 'chi', 'CARHR232370' => 'chi', 'CARHR244670' => 'chi', 'CARHR244680' => 'chi', 'CARHR257520' => 'chi', 'Carub.0001s1872' => 'cru', 'Carub.0006s1130' => 'cru', 'Carub.0007s0396' => 'cru', 'Carub.0007s0397' => 'cru', 'Carub.0007s1608' => 'cru', 'Carub.0008s1068' => 'cru', 'Carub.0008s1077' => 'cru', 'Ca_16158_v3' => 'car', 'Ca_17571_v3' => 'car', 'Ca_21936_v3' => 'car', 'Ca_22350_v3' => 'car', 'CBR_g22445' => 'cbr', 'CBR_g26290' => 'cbr', 'Cc04_g09610' => 'ccan', 'Cc04_g12280' => 'ccan', 'Cc07_g10230' => 'ccan', 'CDE02G0093' => 'cde', 'CDE02G0701' => 'cde', 'CDE04G1050' => 'cde', 'CDE05G1833' => 'cde', 'CDE05G3058' => 'cde', 'CDE05G3380' => 'cde', 'CDE06G0536' => 'cde', 'Cfa006923' => 'cfa', 'Cfa009402' => 'cfa', 'Cfa018751' => 'cfa', 'Cfa019164' => 'cfa', 'Cfa022935' => 'cfa', 'Ciclev10019081m.g' => 'ccl', 'Ciclev10025076m.g' => 'ccl', 'Ciclev10030712m.g' => 'ccl', 'Ciclev10033760m.g' => 'ccl', 'CiPaw.05G105600' => 'cil', 'CiPaw.08G136700' => 'cil', 'CiPaw.11G003900' => 'cil', 'CiPaw.11G023700' => 'cil', 'CiPaw.12G003700' => 'cil', 'ClCG06G017100' => 'cla', 'ClCG06G018110' => 'cla', 'ClCG07G008800' => 'cla', 'ClCG07G015330' => 'cla', 'COL.COLO4_13698' => 'col', 'COL.COLO4_16659' => 'col', 'COL.COLO4_21986' => 'col', 'COL.COLO4_24049' => 'col', 'COL.COLO4_29061' => 'col', 'COL.COLO4_29075' => 'col', 'COL.COLO4_30094' => 'col', 'Cpa.g.c33689' => 'cpa', 'Cpa.g.sc108.39' => 'cpa', 'Cpa.g.sc108.41' => 'cpa', 'Cpa.g.sc1163.1' => 'cpa', 'Cpa.g.sc4.155' => 'cpa', 'Cpa.g.sc6.194' => 'cpa', 'CsaV3_1G000340' => 'csa', 'CsaV3_1G001400' => 'csa', 'CsaV3_4G002220' => 'csa', 'CsaV3_4G005370' => 'csa', 'CSS0007487' => 'camsi', 'CSS0008066' => 'camsi', 'CSS0009120' => 'camsi', 'CSS0015512' => 'camsi', 'CSS0022409' => 'camsi', 'CSS0025358' => 'camsi', 'CSS0044547' => 'camsi', 'DCAR_013057' => 'dca', 'DCAR_015058' => 'dca', 'DCAR_016027' => 'dca', 'DCAR_017327' => 'dca', 'DCAR_020743' => 'dca', 'DCAR_026157' => 'dca', 'DCAR_032339' => 'dca', 'DCAR_032340' => 'dca', 'Dinv11200' => 'din', 'Dinv11201' => 'din', 'Dinv20631' => 'din', 'Dinv23182' => 'din', 'Dinv33466' => 'din', 'Dinv33583' => 'din', 'Dinv38565' => 'din', 'Duzib068G0200' => 'dzi', 'Duzib147G0132' => 'dzi', 'Duzib147G0635' => 'dzi', 'Duzib205G1670' => 'dzi', 'Duzib251G0606' => 'dzi', 'ECA232G3336' => 'eca', 'ECA232G3763' => 'eca', 'ECA232G4845' => 'eca', 'ECA234G1607' => 'eca', 'ECA246G0932' => 'eca', 'ECA247G0781' => 'eca', 'ECA247G1932' => 'eca', 'ECA247G2079' => 'eca', 'ECA247G3338' => 'eca', 'ECA247G4115' => 'eca', 'EL10Ac3g06552' => 'bvu', 'EL10Ac5g10721' => 'bvu', 'EL10Ac5g10722' => 'bvu', 'EL10Ac5g10723' => 'bvu', 'EL10Ac5g11361' => 'bvu', 'EL10Ac6g13553' => 'bvu', 'EL10As8g23872' => 'bvu', 'Eucgr.B00250' => 'egr', 'Eucgr.B00251' => 'egr', 'Eucgr.B03533' => 'egr', 'Eucgr.I02381' => 'egr', 'Eucgr.K02700' => 'egr', 'FAN02G0174' => 'fan', 'FAN02G3146' => 'fan', 'FAN04G1672' => 'fan', 'FAN04G2273' => 'fan', 'FAN05G2791' => 'fan', 'FAN05G4035' => 'fan', 'FAN07G0834' => 'fan', 'FAN08G1198' => 'fan', 'FAN09G4182' => 'fan', 'FAN12G0496' => 'fan', 'FAN13G1027' => 'fan', 'FAN13G2951' => 'fan', 'FAN14G0705' => 'fan', 'FAN14G0720' => 'fan', 'FAN17G0201' => 'fan', 'FAN17G2665' => 'fan', 'FAN18G1456' => 'fan', 'FAN18G1525' => 'fan', 'FAN18G3500' => 'fan', 'FAN28G2670' => 'fan', 'FvH4_1g12391' => 'fve', 'FvH4_4g23220' => 'fve', 'FvH4_5g08810' => 'fve', 'FvH4_5g28960' => 'fve', 'FvH4_6g42820' => 'fve', 'FvH4_6g51110' => 'fve', 'Glyma.02G051802' => 'gma', 'Glyma.04G185300' => 'gma', 'Glyma.05G202900' => 'gma', 'Glyma.08G010300' => 'gma', 'Glyma.16G131900' => 'gma', 'Glyma.17G087900' => 'gma', 'Gohir.A07G048600' => 'ghi', 'Gohir.A11G179000' => 'ghi', 'Gohir.A12G140900' => 'ghi', 'Gohir.A12G140950' => 'ghi', 'Gohir.A12G191700' => 'ghi', 'Gohir.A13G086300' => 'ghi', 'Gohir.D07G052900' => 'ghi', 'Gohir.D11G186600' => 'ghi', 'Gohir.D12G145575' => 'ghi', 'Gohir.D12G145650' => 'ghi', 'Gohir.D12G145725' => 'ghi', 'Gohir.D12G194050' => 'ghi', 'Gohir.D13G091800' => 'ghi', 'Gorai.001G055900' => 'gra', 'Gorai.007G198400' => 'gra', 'Gorai.008G157000' => 'gra', 'Gorai.008G157100' => 'gra', 'Gorai.008G208700' => 'gra', 'Gorai.010G138700' => 'gra', 'GSVIVG01000977001' => 'vvi', 'GSVIVG01007708001' => 'vvi', 'GSVIVG01008587001' => 'vvi', 'GSVIVG01018849001' => 'vvi', 'GSVIVG01032432001' => 'vvi', 'HanXRQChr02g0034131' => 'han', 'HanXRQChr02g0035981' => 'han', 'HanXRQChr02g0035991' => 'han', 'HanXRQChr05g0155611' => 'han', 'HanXRQChr05g0155621' => 'han', 'HanXRQChr08g0236501' => 'han', 'HanXRQChr09g0261321' => 'han', 'HanXRQChr09g0272081' => 'han', 'HanXRQChr10g0310741' => 'han', 'HanXRQChr11g0325591' => 'han', 'HanXRQChr12g0385691' => 'han', 'HanXRQChr13g0387801' => 'han', 'HanXRQChr15g0463011' => 'han', 'Haze_03826' => 'cav', 'Haze_03827' => 'cav', 'Haze_07183' => 'cav', 'Haze_07537' => 'cav', 'Haze_07539' => 'cav', 'Haze_12461' => 'cav', 'Haze_16115' => 'cav', 'Haze_16808' => 'cav', 'Haze_18531' => 'cav', 'Hma1.2p1_0046F.1_g026700' => 'hma', 'Hma1.2p1_0046F.1_g026710' => 'hma', 'Hma1.2p1_0168F.1_g074340' => 'hma', 'Hma1.2p1_0266F.1_g107030' => 'hma', 'Hma1.2p1_0266F.1_g107060' => 'hma', 'Hma1.2p1_0275F.1_g110510' => 'hma', 'Hma1.2p1_0592F.1_g185490' => 'hma', 'Hma1.2p1_0592F.1_g185500' => 'hma', 'Hma1.2p1_0592F.1_g185510' => 'hma', 'Hma1.2p1_0592F.1_g185520' => 'hma', 'Hma1.2p1_0592F.1_g185530' => 'hma', 'Hma1.2p1_0818F.1_g223450' => 'hma', 'HPP92_009708' => 'vpl', 'HPP92_009793' => 'vpl', 'HPP92_009796' => 'vpl', 'HPP92_009797' => 'vpl', 'HPP92_014940' => 'vpl', 'HPP92_014988' => 'vpl', 'Hund02463' => 'sun', 'Hund02760' => 'sun', 'Hund05071' => 'sun', 'Hund10108' => 'sun', 'Hund11204' => 'sun', 'Hund14016' => 'sun', 'Hund16464' => 'sun', 'Lalb_Chr09g0333391' => 'lal', 'Lalb_Chr11g0070461' => 'lal', 'Lalb_Chr12g0201671' => 'lal', 'Lalb_Chr13g0297161' => 'lal', 'Lj1g0002823' => 'lja', 'Lj3C1074T6' => 'lonja', 'Lj4A212T28' => 'lonja', 'Lj4g0005516' => 'lja', 'Lj4g0013705' => 'lja', 'Lj4g0027865' => 'lja', 'Lj5C92G16' => 'lonja', 'Lj5C92T12' => 'lonja', 'Lj7C596T3' => 'lonja', 'Lj9A446G59' => 'lonja', 'Lj9A482G21' => 'lonja', 'Lsat_1_v5_gn_1_28261' => 'lsa', 'Lsat_1_v5_gn_1_28281' => 'lsa', 'Lsat_1_v5_gn_1_32721' => 'lsa', 'Lsat_1_v5_gn_4_151760' => 'lsa', 'Lsat_1_v5_gn_4_2120' => 'lsa', 'Lsat_1_v5_gn_4_75761' => 'lsa', 'Lsat_1_v5_gn_5_10920' => 'lsa', 'Manes.02G099900' => 'mes', 'Manes.11G096200' => 'mes', 'Manes.12G007200' => 'mes', 'Manes.14G048300' => 'mes', 'Manes.17G114700' => 'mes', 'Mapoly0002s0070' => 'mpo', 'Mapoly0029s0099' => 'mpo', 'MBI07_g24742_MAGBIO' => 'mbi', 'MBI10_g27988_MAGBIO' => 'mbi', 'MBI11_g13057_MAGBIO' => 'mbi', 'MD02G1137200' => 'mdo', 'MD06G1137200' => 'mdo', 'MD07G1122300' => 'mdo', 'MD09G1078200' => 'mdo', 'MD13G1123700' => 'mdo', 'MD14G1151900' => 'mdo', 'MD17G1030900' => 'mdo', 'MD17G1068200' => 'mdo', 'MD17G1068600' => 'mdo', 'Medtr3g077540' => 'mtr', 'Medtr4g105530' => 'mtr', 'Medtr8g076580' => 'mtr', 'Medtr8g076590' => 'mtr', 'Medtr8g096410' => 'mtr', 'MELO3C016411.2' => 'cme', 'MELO3C017780.2' => 'cme', 'MELO3C022560.2' => 'cme', 'MELO3C026187.2' => 'cme', 'MELO3C026286.2' => 'cme', 'MELO3C032854.2' => 'cme', 'Migut.H02495' => 'egut', 'Migut.I00561' => 'egut', 'Migut.K01015' => 'egut', 'Migut.K01016' => 'egut', 'Migut.L00743' => 'egut', 'Migut.L00744' => 'egut', 'Migut.L00746' => 'egut', 'Migut.L00798' => 'egut', 'Migut.L00799' => 'egut', 'Migut.N02096' => 'egut', 'MSTRG.11259' => 'ama', 'MSTRG.23142' => 'ama', 'MSTRG.2499' => 'ama', 'Nitab4.5_0000003g0730' => 'nta', 'Nitab4.5_0000137g0020' => 'nta', 'Nitab4.5_0000721g0210' => 'nta', 'Nitab4.5_0000723g0050' => 'nta', 'Nitab4.5_0000913g0070' => 'nta', 'Nitab4.5_0001332g0040' => 'nta', 'Nitab4.5_0001771g0050' => 'nta', 'Nitab4.5_0001918g0050' => 'nta', 'Nitab4.5_0002686g0030' => 'nta', 'Nitab4.5_0003156g0020' => 'nta', 'Nitab4.5_0003383g0040' => 'nta', 'Nitab4.5_0003918g0010' => 'nta', 'Nitab4.5_0006760g0010' => 'nta', 'Nn1g05981' => 'nnu', 'Nn1g06288' => 'nnu', 'Nn3g16371' => 'nnu', 'Nn3g16786' => 'nnu', 'Nn4g22232' => 'nnu', 'Oeu005144.1' => 'oeu', 'Oeu005145.1' => 'oeu', 'Oeu011348.1' => 'oeu', 'Oeu016415.1' => 'oeu', 'Oeu023501.1' => 'oeu', 'Oeu044473.1' => 'oeu', 'Oeu048892.2' => 'oeu', 'Os01g0549200' => 'osa', 'Os02g0469300' => 'osa', 'Os04g0311100' => 'osa', 'Os06g0474900' => 'osa', 'Os10g0181700' => 'osa', 'Os11g0454800' => 'osa', 'Peaxi162Scf00037g00714' => 'pax', 'Peaxi162Scf00084g01217' => 'pax', 'Peaxi162Scf00257g00217' => 'pax', 'Peaxi162Scf00516g00215' => 'pax', 'Peaxi162Scf00689g00123' => 'pax', 'PGR044G2719' => 'pgr', 'PGR083G1360' => 'pgr', 'PGR102G2849' => 'pgr', 'PGR119G2534' => 'pgr', 'PGSC0003DMG400003538' => 'stu', 'PGSC0003DMG400028138' => 'stu', 'PGSC0003DMG400031732' => 'stu', 'PGSC0003DMG400038165' => 'stu', 'Phvul.002G284600' => 'pvu', 'Phvul.003G258200' => 'pvu', 'Phvul.009G176500' => 'pvu', 'Potri.003G167201' => 'ptr', 'Potri.005G118400' => 'ptr', 'Potri.012G089000' => 'ptr', 'Potri.012G102800' => 'ptr', 'Potri.015G079400' => 'ptr', 'Potri.015G100900' => 'ptr', 'Pp3c14_9810' => 'ppa', 'Pp3c15_10450' => 'ppa', 'Pp3c20_19150' => 'ppa', 'Pp3c23_12740' => 'ppa', 'Pp3c23_6310' => 'ppa', 'Pp3c24_3720' => 'ppa', 'Pp3c27_2580' => 'ppa', 'Pp3c9_8990' => 'ppa', 'PRCOL_00002854' => 'pco', 'Prupe.1G221200' => 'ppe', 'Prupe.3G289000' => 'ppe', 'Prupe.5G147000' => 'ppe', 'Prupe.6G157300' => 'ppe', 'Prupe.7G163400' => 'ppe', 'Psat0s2177g0040' => 'psa', 'Psat3g174760' => 'psa', 'Psat3g192160' => 'psa', 'Psat4g058520' => 'psa', 'Psat4g096840' => 'psa', 'Psat7g037320' => 'psa', 'PSO017G1274' => 'pso', 'PSO017G5166' => 'pso', 'PSO063G4558' => 'pso', 'PSO170G4458' => 'pso', 'PSO170G5005' => 'pso', 'PSO210G6156' => 'pso', 'PSO210G6635' => 'pso', 'PSO210G7397' => 'pso', 'PSO210G7700' => 'pso', 'PSO455G0035' => 'pso', 'PSO455G0180' => 'pso', 'PSO478G4515' => 'pso', 'PSO832G1305' => 'pso', 'PSO832G3489' => 'pso', 'QL02p075247' => 'qlo', 'QL03p051148' => 'qlo', 'QL05p010313' => 'qlo', 'QL06p034627' => 'qlo', 'QL10p001889' => 'qlo', 'QL10p010846' => 'qlo', 'RcHm_v2.0_Chr1g0350621' => 'rch', 'RcHm_v2.0_Chr1g0350641' => 'rch', 'RcHm_v2.0_Chr2g0092891' => 'rch', 'RcHm_v2.0_Chr2g0100251' => 'rch', 'RcHm_v2.0_Chr2g0158661' => 'rch', 'RcHm_v2.0_Chr2g0172741' => 'rch', 'RcHm_v2.0_Chr4g0429571' => 'rch', 'RcHm_v2.0_Chr5g0042471' => 'rch', 'RcHm_v2.0_Chr7g0189451' => 'rch', 'Rhsim08G0052000' => 'rsi', 'Rhsim08G0174400' => 'rsi', 'Rhsim08G0193200' => 'rsi', 'Rhsim10G0214800' => 'rsi', 'Rhsim10G0214900' => 'rsi', 'Rhsim10G0215000' => 'rsi', 'Rhsim12G0022900' => 'rsi', 'Rhsim12G0177500' => 'rsi', 'Rhsim12G0177700' => 'rsi', 'Sabra03G0122600' => 'sbr', 'Sabra05G0097400' => 'sbr', 'Sabra12G0064100' => 'sbr', 'Sabra15G0121300' => 'sbr', 'SalBow2G0642' => 'sbo', 'SalBow5G2667' => 'sbo', 'SalBow5G4873' => 'sbo', 'SalBow8G2395' => 'sbo', 'Sc03g0003290' => 'sci', 'Sc10g0010130' => 'sci', 'Sc22g0003650' => 'sci', 'Sed0001603' => 'sed', 'Sed0004259' => 'sed', 'Sed0006789' => 'sed', 'Sed0011838' => 'sed', 'Sed0012964' => 'sed', 'Sed0016383' => 'sed', 'Sed0019010' => 'sed', 'Sed0020188' => 'sed', 'SEGI_04702' => 'sgi', 'SEGI_17231' => 'sgi', 'SEGI_18877' => 'sgi', 'SEGI_25196' => 'sgi', 'SEGI_25515' => 'sgi', 'SEGI_28445' => 'sgi', 'SEGI_37452' => 'sgi', 'SGA_v2.0_scaffold188G40336' => 'sas', 'SGA_v2.0_scaffold228G43247' => 'sas', 'SGA_v2.0_scaffold280G46853' => 'sas', 'SGA_v2.0_scaffold34G13808' => 'sas', 'SGA_v2.0_scaffold40G15576' => 'sas', 'SGA_v2.0_scaffold611G53188' => 'sas', 'SGA_v2.0_scaffold78G25461' => 'sas', 'SGA_v2.0_scaffold90G27888' => 'sas', 'SHI08601' => 'shi', 'SHI08606' => 'shi', 'SHI17117' => 'shi', 'SHI17119' => 'shi', 'SMO118G0201' => 'smo', 'SMO169G0247' => 'smo', 'SMO176G0006' => 'smo', 'SMO176G0015' => 'smo', 'SMO202G0006' => 'smo', 'SMO240G0050' => 'smo', 'SMO286G0009' => 'smo', 'SMO338G0033' => 'smo', 'SMO356G0533' => 'smo', 'SMO364G0382' => 'smo', 'SMO367G0166' => 'smo', 'SMO367G1098' => 'smo', 'Solyc01g009920.3' => 'sly', 'Solyc01g099300.3' => 'sly', 'Solyc02g084700.3' => 'sly', 'Solyc03g097520.3' => 'sly', 'Solyc06g071580.3' => 'sly', 'Solyc10g081760.3' => 'sly', 'Sopen01g005480' => 'spe', 'Sopen01g042850' => 'spe', 'Sopen02g029370' => 'spe', 'Sopen03g028280' => 'spe', 'Sopen06g027870' => 'spe', 'Sopen10g032270' => 'spe', 'Sp5g18180' => 'spa', 'Sp6g12880' => 'spa', 'Sp6g30850' => 'spa', 'Sp7g22960' => 'spa', 'Sp7g34010' => 'spa', 'SpUn1326_0010' => 'spa', 'TAR371G0242' => 'tar', 'TAR622G0638' => 'tar', 'TAR628G1548' => 'tar', 'TAR629G1079' => 'tar', 'TAR629G3413' => 'tar', 'THA.LOC104804249' => 'tha', 'THA.LOC104808315' => 'tha', 'THA.LOC104809238' => 'tha', 'THA.LOC104825484' => 'tha', 'Thecc.01G025500' => 'tca', 'Thecc.03G015800' => 'tca', 'Thecc.03G018000' => 'tca', 'Thecc.03G134800' => 'tca', 'Thecc.04G014700' => 'tca', 'Thhalv10006991m.g' => 'esa', 'Thhalv10012707m.g' => 'esa', 'Thhalv10015739m.g' => 'esa', 'Thhalv10024553m.g' => 'esa', 'Thhalv10024673m.g' => 'esa', 'Thhalv10029187m.g' => 'esa', 'TPR.G12971' => 'tpr', 'TPR.G29396' => 'tpr', 'TPR.G33376' => 'tpr', 'TPR.G35508' => 'tpr', 'TPR.G35516' => 'tpr', 'TPR.G37317' => 'tpr', 'TPR.G37389' => 'tpr', 'TPR.G37523' => 'tpr', 'TPR.G559' => 'tpr', 'TWI14G0070' => 'twi', 'TWI14G0729' => 'twi', 'TWI18G0596' => 'twi', 'TWI39G0780' => 'twi', 'TWI39G0850' => 'twi', 'TWI73G1052' => 'twi', 'unitig_52.g17485' => 'ugi', 'unitig_61.g26355' => 'ugi', 'vmacro01040' => 'vma', 'vmacro16731' => 'vma', 'vmacro18270' => 'vma', 'vmacro19142' => 'vma', 'vmacro19407' => 'vma', 'vmacro19408' => 'vma', 'vmacro21899' => 'vma', 'vmacro21900' => 'vma', 'vmacro21901' => 'vma', 'VMungo0251G0490' => 'vmu', 'VMungo0251G1748' => 'vmu', 'VMungo1309G0421' => 'vmu', 'Zm00001eb086500' => 'zma', 'Zm00001eb150680' => 'zma', 'Zm00001eb162330' => 'zma', 'Zm00001eb203130' => 'zma', 'Zm00001eb369480' => 'zma', 'Zm00001eb382340' => 'zma', 'Zm00001eb416360' => 'zma' ) $gf_id = 'HOM05D000902' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000902' ) $data_identifier = 'HOM05D000902' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 13, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 10, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 6, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 9, 'hma' => (int) 12, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 4, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 6, 'ppa' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 6, 'rch' => (int) 9, 'rsi' => (int) 9, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 12, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 3, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416360' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000902', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '663', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02470' => 'bna', 'A01p16260' => 'bna', 'A02p01680' => 'bna', 'A03p16600' => 'bna', 'A03p55660' => 'bna', 'A03p64160' => 'bna', 'A03p64170' => 'bna', 'A08p31900' => 'bna', 'A09p59530' => 'bna', 'A10p08230' => 'bna', 'A10p25090' => 'bna', 'Aa31LG3G7100' => 'aar', 'Aa31LG3G7110' => 'aar', 'Aa31LG6G13160' => 'aar', 'Aa31LG7G10770' => 'aar', 'Aa31LG7G3830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2723' => 'aag', 'Actinidia08045' => 'ach', 'Actinidia08888' => 'ach', 'Actinidia18333' => 'ach', 'Actinidia19334' => 'ach', 'Actinidia25552' => 'ach', 'Actinidia26089' => 'ach', 'Actinidia30615' => 'ach', 'Actinidia30616' => 'ach', 'Actinidia33083' => 'ach', 'Actinidia35762' => 'ach', 'Ah.02g110620' => 'amhyb', 'Ah.11g046390' => 'amhyb', 'AL1G31670' => 'aly', 'AL6G23730' => 'aly', 'AL7G14740' => 'aly', 'AL7G14750' => 'aly', 'AL7G14760' => 'aly', 'AL7G28220' => 'aly', 'AL8G24940' => 'aly', 'Aqoxy3G01665' => 'aox', 'Aqoxy3G02853' => 'aox', 'Aqoxy5G01513' => 'aox', 'Aqoxy5G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8SKA4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ75LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKDA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0LJZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7REX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZP4YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWX7I5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2QKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS0L9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPCD8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q161UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC7XCF' => 'arhy', 'AT1G19100' => 'ath', 'AT4G24970' => 'ath', 'AT4G36270' => 'ath', 'AT4G36280' => 'ath', 'AT4G36290' => 'ath', 'AT5G13130' => 'ath', 'AT5G50780' => 'ath', 'ATR0582G266' => 'atr', 'ATR0661G195' => 'atr', 'ATR1152G031' => 'atr', 'Atru.chr11.2382' => 'acertr', 'Atru.chr12.2337' => 'acertr', 'Atru.chr3.744' => 'acertr', 'Atru.chr6.1870' => 'acertr', 'Atru.chr9.2515' => 'acertr', 'AUR62004120' => 'cqu', 'AUR62005667' => 'cqu', 'AUR62007634' => 'cqu', 'AUR62008186' => 'cqu', 'AUR62008187' => 'cqu', 'AUR62008188' => 'cqu', 'AUR62027954' => 'cqu', 'AUR62028766' => 'cqu', 'AUR62028767' => 'cqu', 'AUR62028768' => 'cqu', 'AUR62028886' => 'cqu', 'AUR62029563' => 'cqu', 'AUR62038832' => 'cqu', 'BcaB01g04149' => 'bca', 'BcaB03g12940' => 'bca', 'BcaB03g13090' => 'bca', 'BcaB03g14466' => 'bca', 'BcaB05g24035' => 'bca', 'BcaC01g06050' => 'bca', 'BcaC04g19148' => 'bca', 'BcaC04g20761' => 'bca', 'BcaC06g32845' => 'bca', 'BcaC07g41274' => 'bca', 'BcaC09g50827' => 'bca', 'BcaNung00741' => 'bca', 'BcaNung00742' => 'bca', 'BcaNung01859' => 'bca', 'BcaNung03985' => 'bca', 'BcaNung03989' => 'bca', 'BcaNung05661' => 'bca', 'BolC1t00257H' => 'bol', 'BolC1t01956H' => 'bol', 'BolC2t06534H' => 'bol', 'BolC3t14334H' => 'bol', 'BolC5t30451H' => 'bol', 'BolC7t45880H' => 'bol', 'BolC7t46586H' => 'bol', 'BolC8t49301H' => 'bol', 'BolC8t51837H' => 'bol', 'BolC9t56822H' => 'bol', 'BolC9t59235H' => 'bol', 'BraA01t00234Z' => 'bra', 'BraA01t01563Z' => 'bra', 'BraA02t05147Z' => 'bra', 'BraA03t10947Z' => 'bra', 'BraA03t14633Z' => 'bra', 'BraA08t35112Z' => 'bra', 'BraA09t41330Z' => 'bra', 'BraA10t44570Z' => 'bra', 'C01p02670' => 'bna', 'C01p20260' => 'bna', 'C02p05890' => 'bna', 'C03p19530' => 'bna', 'C05p17470' => 'bna', 'C07p53900' => 'bna', 'C07p61630' => 'bna', 'C08p16800' => 'bna', 'C08p42810' => 'bna', 'C09p39480' => 'bna', 'C09p63980' => 'bna', 'CAN.G1001.7' => 'can', 'CAN.G1034.55' => 'can', 'CAN.G143.7' => 'can', 'CAN.G3340.1' => 'can', 'CAN.G358.19' => 'can', 'CAN.G373.2' => 'can', 'CAN.G674.16' => 'can', 'CAN.G674.17' => 'can', 'CAN.G674.18' => 'can', 'CAN.G732.2' => 'can', 'CAN.G732.3' => 'can', 'CAN.G993.39' => 'can', 'CANSAT01G2052' => 'cansat', 'CANSAT80G0070' => 'cansat', 'CANSAT80G0483' => 'cansat', 'CANSAT80G0625' => 'cansat', 'CARHR019690' => 'chi', 'CARHR080280' => 'chi', 'CARHR152750' => 'chi', 'CARHR152760' => 'chi', 'CARHR152770' => 'chi', 'CARHR200340' => 'chi', 'CARHR232370' => 'chi', 'CARHR244670' => 'chi', 'CARHR244680' => 'chi', 'CARHR257520' => 'chi', 'Carub.0001s1872' => 'cru', 'Carub.0006s1130' => 'cru', 'Carub.0007s0396' => 'cru', 'Carub.0007s0397' => 'cru', 'Carub.0007s1608' => 'cru', 'Carub.0008s1068' => 'cru', 'Carub.0008s1077' => 'cru', 'Ca_16158_v3' => 'car', 'Ca_17571_v3' => 'car', 'Ca_21936_v3' => 'car', 'Ca_22350_v3' => 'car', 'CBR_g22445' => 'cbr', 'CBR_g26290' => 'cbr', 'Cc04_g09610' => 'ccan', 'Cc04_g12280' => 'ccan', 'Cc07_g10230' => 'ccan', 'CDE02G0093' => 'cde', 'CDE02G0701' => 'cde', 'CDE04G1050' => 'cde', 'CDE05G1833' => 'cde', 'CDE05G3058' => 'cde', 'CDE05G3380' => 'cde', 'CDE06G0536' => 'cde', 'Cfa006923' => 'cfa', 'Cfa009402' => 'cfa', 'Cfa018751' => 'cfa', 'Cfa019164' => 'cfa', 'Cfa022935' => 'cfa', 'Ciclev10019081m.g' => 'ccl', 'Ciclev10025076m.g' => 'ccl', 'Ciclev10030712m.g' => 'ccl', 'Ciclev10033760m.g' => 'ccl', 'CiPaw.05G105600' => 'cil', 'CiPaw.08G136700' => 'cil', 'CiPaw.11G003900' => 'cil', 'CiPaw.11G023700' => 'cil', 'CiPaw.12G003700' => 'cil', 'ClCG06G017100' => 'cla', 'ClCG06G018110' => 'cla', 'ClCG07G008800' => 'cla', 'ClCG07G015330' => 'cla', 'COL.COLO4_13698' => 'col', 'COL.COLO4_16659' => 'col', 'COL.COLO4_21986' => 'col', 'COL.COLO4_24049' => 'col', 'COL.COLO4_29061' => 'col', 'COL.COLO4_29075' => 'col', 'COL.COLO4_30094' => 'col', 'Cpa.g.c33689' => 'cpa', 'Cpa.g.sc108.39' => 'cpa', 'Cpa.g.sc108.41' => 'cpa', 'Cpa.g.sc1163.1' => 'cpa', 'Cpa.g.sc4.155' => 'cpa', 'Cpa.g.sc6.194' => 'cpa', 'CsaV3_1G000340' => 'csa', 'CsaV3_1G001400' => 'csa', 'CsaV3_4G002220' => 'csa', 'CsaV3_4G005370' => 'csa', 'CSS0007487' => 'camsi', 'CSS0008066' => 'camsi', 'CSS0009120' => 'camsi', 'CSS0015512' => 'camsi', 'CSS0022409' => 'camsi', 'CSS0025358' => 'camsi', 'CSS0044547' => 'camsi', 'DCAR_013057' => 'dca', 'DCAR_015058' => 'dca', 'DCAR_016027' => 'dca', 'DCAR_017327' => 'dca', 'DCAR_020743' => 'dca', 'DCAR_026157' => 'dca', 'DCAR_032339' => 'dca', 'DCAR_032340' => 'dca', 'Dinv11200' => 'din', 'Dinv11201' => 'din', 'Dinv20631' => 'din', 'Dinv23182' => 'din', 'Dinv33466' => 'din', 'Dinv33583' => 'din', 'Dinv38565' => 'din', 'Duzib068G0200' => 'dzi', 'Duzib147G0132' => 'dzi', 'Duzib147G0635' => 'dzi', 'Duzib205G1670' => 'dzi', 'Duzib251G0606' => 'dzi', 'ECA232G3336' => 'eca', 'ECA232G3763' => 'eca', 'ECA232G4845' => 'eca', 'ECA234G1607' => 'eca', 'ECA246G0932' => 'eca', 'ECA247G0781' => 'eca', 'ECA247G1932' => 'eca', 'ECA247G2079' => 'eca', 'ECA247G3338' => 'eca', 'ECA247G4115' => 'eca', 'EL10Ac3g06552' => 'bvu', 'EL10Ac5g10721' => 'bvu', 'EL10Ac5g10722' => 'bvu', 'EL10Ac5g10723' => 'bvu', 'EL10Ac5g11361' => 'bvu', 'EL10Ac6g13553' => 'bvu', 'EL10As8g23872' => 'bvu', 'Eucgr.B00250' => 'egr', 'Eucgr.B00251' => 'egr', 'Eucgr.B03533' => 'egr', 'Eucgr.I02381' => 'egr', 'Eucgr.K02700' => 'egr', 'FAN02G0174' => 'fan', 'FAN02G3146' => 'fan', 'FAN04G1672' => 'fan', 'FAN04G2273' => 'fan', 'FAN05G2791' => 'fan', 'FAN05G4035' => 'fan', 'FAN07G0834' => 'fan', 'FAN08G1198' => 'fan', 'FAN09G4182' => 'fan', 'FAN12G0496' => 'fan', 'FAN13G1027' => 'fan', 'FAN13G2951' => 'fan', 'FAN14G0705' => 'fan', 'FAN14G0720' => 'fan', 'FAN17G0201' => 'fan', 'FAN17G2665' => 'fan', 'FAN18G1456' => 'fan', 'FAN18G1525' => 'fan', 'FAN18G3500' => 'fan', 'FAN28G2670' => 'fan', 'FvH4_1g12391' => 'fve', 'FvH4_4g23220' => 'fve', 'FvH4_5g08810' => 'fve', 'FvH4_5g28960' => 'fve', 'FvH4_6g42820' => 'fve', 'FvH4_6g51110' => 'fve', 'Glyma.02G051802' => 'gma', 'Glyma.04G185300' => 'gma', 'Glyma.05G202900' => 'gma', 'Glyma.08G010300' => 'gma', 'Glyma.16G131900' => 'gma', 'Glyma.17G087900' => 'gma', 'Gohir.A07G048600' => 'ghi', 'Gohir.A11G179000' => 'ghi', 'Gohir.A12G140900' => 'ghi', 'Gohir.A12G140950' => 'ghi', 'Gohir.A12G191700' => 'ghi', 'Gohir.A13G086300' => 'ghi', 'Gohir.D07G052900' => 'ghi', 'Gohir.D11G186600' => 'ghi', 'Gohir.D12G145575' => 'ghi', 'Gohir.D12G145650' => 'ghi', 'Gohir.D12G145725' => 'ghi', 'Gohir.D12G194050' => 'ghi', 'Gohir.D13G091800' => 'ghi', 'Gorai.001G055900' => 'gra', 'Gorai.007G198400' => 'gra', 'Gorai.008G157000' => 'gra', 'Gorai.008G157100' => 'gra', 'Gorai.008G208700' => 'gra', 'Gorai.010G138700' => 'gra', 'GSVIVG01000977001' => 'vvi', 'GSVIVG01007708001' => 'vvi', 'GSVIVG01008587001' => 'vvi', 'GSVIVG01018849001' => 'vvi', 'GSVIVG01032432001' => 'vvi', 'HanXRQChr02g0034131' => 'han', 'HanXRQChr02g0035981' => 'han', 'HanXRQChr02g0035991' => 'han', 'HanXRQChr05g0155611' => 'han', 'HanXRQChr05g0155621' => 'han', 'HanXRQChr08g0236501' => 'han', 'HanXRQChr09g0261321' => 'han', 'HanXRQChr09g0272081' => 'han', 'HanXRQChr10g0310741' => 'han', 'HanXRQChr11g0325591' => 'han', 'HanXRQChr12g0385691' => 'han', 'HanXRQChr13g0387801' => 'han', 'HanXRQChr15g0463011' => 'han', 'Haze_03826' => 'cav', 'Haze_03827' => 'cav', 'Haze_07183' => 'cav', 'Haze_07537' => 'cav', 'Haze_07539' => 'cav', 'Haze_12461' => 'cav', 'Haze_16115' => 'cav', 'Haze_16808' => 'cav', 'Haze_18531' => 'cav', 'Hma1.2p1_0046F.1_g026700' => 'hma', 'Hma1.2p1_0046F.1_g026710' => 'hma', 'Hma1.2p1_0168F.1_g074340' => 'hma', 'Hma1.2p1_0266F.1_g107030' => 'hma', 'Hma1.2p1_0266F.1_g107060' => 'hma', 'Hma1.2p1_0275F.1_g110510' => 'hma', 'Hma1.2p1_0592F.1_g185490' => 'hma', 'Hma1.2p1_0592F.1_g185500' => 'hma', 'Hma1.2p1_0592F.1_g185510' => 'hma', 'Hma1.2p1_0592F.1_g185520' => 'hma', 'Hma1.2p1_0592F.1_g185530' => 'hma', 'Hma1.2p1_0818F.1_g223450' => 'hma', 'HPP92_009708' => 'vpl', 'HPP92_009793' => 'vpl', 'HPP92_009796' => 'vpl', 'HPP92_009797' => 'vpl', 'HPP92_014940' => 'vpl', 'HPP92_014988' => 'vpl', 'Hund02463' => 'sun', 'Hund02760' => 'sun', 'Hund05071' => 'sun', 'Hund10108' => 'sun', 'Hund11204' => 'sun', 'Hund14016' => 'sun', 'Hund16464' => 'sun', 'Lalb_Chr09g0333391' => 'lal', 'Lalb_Chr11g0070461' => 'lal', 'Lalb_Chr12g0201671' => 'lal', 'Lalb_Chr13g0297161' => 'lal', 'Lj1g0002823' => 'lja', 'Lj3C1074T6' => 'lonja', 'Lj4A212T28' => 'lonja', 'Lj4g0005516' => 'lja', 'Lj4g0013705' => 'lja', 'Lj4g0027865' => 'lja', 'Lj5C92G16' => 'lonja', 'Lj5C92T12' => 'lonja', 'Lj7C596T3' => 'lonja', 'Lj9A446G59' => 'lonja', 'Lj9A482G21' => 'lonja', 'Lsat_1_v5_gn_1_28261' => 'lsa', 'Lsat_1_v5_gn_1_28281' => 'lsa', 'Lsat_1_v5_gn_1_32721' => 'lsa', 'Lsat_1_v5_gn_4_151760' => 'lsa', 'Lsat_1_v5_gn_4_2120' => 'lsa', 'Lsat_1_v5_gn_4_75761' => 'lsa', 'Lsat_1_v5_gn_5_10920' => 'lsa', 'Manes.02G099900' => 'mes', 'Manes.11G096200' => 'mes', 'Manes.12G007200' => 'mes', 'Manes.14G048300' => 'mes', 'Manes.17G114700' => 'mes', 'Mapoly0002s0070' => 'mpo', 'Mapoly0029s0099' => 'mpo', 'MBI07_g24742_MAGBIO' => 'mbi', 'MBI10_g27988_MAGBIO' => 'mbi', 'MBI11_g13057_MAGBIO' => 'mbi', 'MD02G1137200' => 'mdo', 'MD06G1137200' => 'mdo', 'MD07G1122300' => 'mdo', 'MD09G1078200' => 'mdo', 'MD13G1123700' => 'mdo', 'MD14G1151900' => 'mdo', 'MD17G1030900' => 'mdo', 'MD17G1068200' => 'mdo', 'MD17G1068600' => 'mdo', 'Medtr3g077540' => 'mtr', 'Medtr4g105530' => 'mtr', 'Medtr8g076580' => 'mtr', 'Medtr8g076590' => 'mtr', 'Medtr8g096410' => 'mtr', 'MELO3C016411.2' => 'cme', 'MELO3C017780.2' => 'cme', 'MELO3C022560.2' => 'cme', 'MELO3C026187.2' => 'cme', 'MELO3C026286.2' => 'cme', 'MELO3C032854.2' => 'cme', 'Migut.H02495' => 'egut', 'Migut.I00561' => 'egut', 'Migut.K01015' => 'egut', 'Migut.K01016' => 'egut', 'Migut.L00743' => 'egut', 'Migut.L00744' => 'egut', 'Migut.L00746' => 'egut', 'Migut.L00798' => 'egut', 'Migut.L00799' => 'egut', 'Migut.N02096' => 'egut', 'MSTRG.11259' => 'ama', 'MSTRG.23142' => 'ama', 'MSTRG.2499' => 'ama', 'Nitab4.5_0000003g0730' => 'nta', 'Nitab4.5_0000137g0020' => 'nta', 'Nitab4.5_0000721g0210' => 'nta', 'Nitab4.5_0000723g0050' => 'nta', 'Nitab4.5_0000913g0070' => 'nta', 'Nitab4.5_0001332g0040' => 'nta', 'Nitab4.5_0001771g0050' => 'nta', 'Nitab4.5_0001918g0050' => 'nta', 'Nitab4.5_0002686g0030' => 'nta', 'Nitab4.5_0003156g0020' => 'nta', 'Nitab4.5_0003383g0040' => 'nta', 'Nitab4.5_0003918g0010' => 'nta', 'Nitab4.5_0006760g0010' => 'nta', 'Nn1g05981' => 'nnu', 'Nn1g06288' => 'nnu', 'Nn3g16371' => 'nnu', 'Nn3g16786' => 'nnu', 'Nn4g22232' => 'nnu', 'Oeu005144.1' => 'oeu', 'Oeu005145.1' => 'oeu', 'Oeu011348.1' => 'oeu', 'Oeu016415.1' => 'oeu', 'Oeu023501.1' => 'oeu', 'Oeu044473.1' => 'oeu', 'Oeu048892.2' => 'oeu', 'Os01g0549200' => 'osa', 'Os02g0469300' => 'osa', 'Os04g0311100' => 'osa', 'Os06g0474900' => 'osa', 'Os10g0181700' => 'osa', 'Os11g0454800' => 'osa', 'Peaxi162Scf00037g00714' => 'pax', 'Peaxi162Scf00084g01217' => 'pax', 'Peaxi162Scf00257g00217' => 'pax', 'Peaxi162Scf00516g00215' => 'pax', 'Peaxi162Scf00689g00123' => 'pax', 'PGR044G2719' => 'pgr', 'PGR083G1360' => 'pgr', 'PGR102G2849' => 'pgr', 'PGR119G2534' => 'pgr', 'PGSC0003DMG400003538' => 'stu', 'PGSC0003DMG400028138' => 'stu', 'PGSC0003DMG400031732' => 'stu', 'PGSC0003DMG400038165' => 'stu', 'Phvul.002G284600' => 'pvu', 'Phvul.003G258200' => 'pvu', 'Phvul.009G176500' => 'pvu', 'Potri.003G167201' => 'ptr', 'Potri.005G118400' => 'ptr', 'Potri.012G089000' => 'ptr', 'Potri.012G102800' => 'ptr', 'Potri.015G079400' => 'ptr', 'Potri.015G100900' => 'ptr', 'Pp3c14_9810' => 'ppa', 'Pp3c15_10450' => 'ppa', 'Pp3c20_19150' => 'ppa', 'Pp3c23_12740' => 'ppa', 'Pp3c23_6310' => 'ppa', 'Pp3c24_3720' => 'ppa', 'Pp3c27_2580' => 'ppa', 'Pp3c9_8990' => 'ppa', 'PRCOL_00002854' => 'pco', 'Prupe.1G221200' => 'ppe', 'Prupe.3G289000' => 'ppe', 'Prupe.5G147000' => 'ppe', 'Prupe.6G157300' => 'ppe', 'Prupe.7G163400' => 'ppe', 'Psat0s2177g0040' => 'psa', 'Psat3g174760' => 'psa', 'Psat3g192160' => 'psa', 'Psat4g058520' => 'psa', 'Psat4g096840' => 'psa', 'Psat7g037320' => 'psa', 'PSO017G1274' => 'pso', 'PSO017G5166' => 'pso', 'PSO063G4558' => 'pso', 'PSO170G4458' => 'pso', 'PSO170G5005' => 'pso', 'PSO210G6156' => 'pso', 'PSO210G6635' => 'pso', 'PSO210G7397' => 'pso', 'PSO210G7700' => 'pso', 'PSO455G0035' => 'pso', 'PSO455G0180' => 'pso', 'PSO478G4515' => 'pso', 'PSO832G1305' => 'pso', 'PSO832G3489' => 'pso', 'QL02p075247' => 'qlo', 'QL03p051148' => 'qlo', 'QL05p010313' => 'qlo', 'QL06p034627' => 'qlo', 'QL10p001889' => 'qlo', 'QL10p010846' => 'qlo', 'RcHm_v2.0_Chr1g0350621' => 'rch', 'RcHm_v2.0_Chr1g0350641' => 'rch', 'RcHm_v2.0_Chr2g0092891' => 'rch', 'RcHm_v2.0_Chr2g0100251' => 'rch', 'RcHm_v2.0_Chr2g0158661' => 'rch', 'RcHm_v2.0_Chr2g0172741' => 'rch', 'RcHm_v2.0_Chr4g0429571' => 'rch', 'RcHm_v2.0_Chr5g0042471' => 'rch', 'RcHm_v2.0_Chr7g0189451' => 'rch', 'Rhsim08G0052000' => 'rsi', 'Rhsim08G0174400' => 'rsi', 'Rhsim08G0193200' => 'rsi', 'Rhsim10G0214800' => 'rsi', 'Rhsim10G0214900' => 'rsi', 'Rhsim10G0215000' => 'rsi', 'Rhsim12G0022900' => 'rsi', 'Rhsim12G0177500' => 'rsi', 'Rhsim12G0177700' => 'rsi', 'Sabra03G0122600' => 'sbr', 'Sabra05G0097400' => 'sbr', 'Sabra12G0064100' => 'sbr', 'Sabra15G0121300' => 'sbr', 'SalBow2G0642' => 'sbo', 'SalBow5G2667' => 'sbo', 'SalBow5G4873' => 'sbo', 'SalBow8G2395' => 'sbo', 'Sc03g0003290' => 'sci', 'Sc10g0010130' => 'sci', 'Sc22g0003650' => 'sci', 'Sed0001603' => 'sed', 'Sed0004259' => 'sed', 'Sed0006789' => 'sed', 'Sed0011838' => 'sed', 'Sed0012964' => 'sed', 'Sed0016383' => 'sed', 'Sed0019010' => 'sed', 'Sed0020188' => 'sed', 'SEGI_04702' => 'sgi', 'SEGI_17231' => 'sgi', 'SEGI_18877' => 'sgi', 'SEGI_25196' => 'sgi', 'SEGI_25515' => 'sgi', 'SEGI_28445' => 'sgi', 'SEGI_37452' => 'sgi', 'SGA_v2.0_scaffold188G40336' => 'sas', 'SGA_v2.0_scaffold228G43247' => 'sas', 'SGA_v2.0_scaffold280G46853' => 'sas', 'SGA_v2.0_scaffold34G13808' => 'sas', 'SGA_v2.0_scaffold40G15576' => 'sas', 'SGA_v2.0_scaffold611G53188' => 'sas', 'SGA_v2.0_scaffold78G25461' => 'sas', 'SGA_v2.0_scaffold90G27888' => 'sas', 'SHI08601' => 'shi', 'SHI08606' => 'shi', 'SHI17117' => 'shi', 'SHI17119' => 'shi', 'SMO118G0201' => 'smo', 'SMO169G0247' => 'smo', 'SMO176G0006' => 'smo', 'SMO176G0015' => 'smo', 'SMO202G0006' => 'smo', 'SMO240G0050' => 'smo', 'SMO286G0009' => 'smo', 'SMO338G0033' => 'smo', 'SMO356G0533' => 'smo', 'SMO364G0382' => 'smo', 'SMO367G0166' => 'smo', 'SMO367G1098' => 'smo', 'Solyc01g009920.3' => 'sly', 'Solyc01g099300.3' => 'sly', 'Solyc02g084700.3' => 'sly', 'Solyc03g097520.3' => 'sly', 'Solyc06g071580.3' => 'sly', 'Solyc10g081760.3' => 'sly', 'Sopen01g005480' => 'spe', 'Sopen01g042850' => 'spe', 'Sopen02g029370' => 'spe', 'Sopen03g028280' => 'spe', 'Sopen06g027870' => 'spe', 'Sopen10g032270' => 'spe', 'Sp5g18180' => 'spa', 'Sp6g12880' => 'spa', 'Sp6g30850' => 'spa', 'Sp7g22960' => 'spa', 'Sp7g34010' => 'spa', 'SpUn1326_0010' => 'spa', 'TAR371G0242' => 'tar', 'TAR622G0638' => 'tar', 'TAR628G1548' => 'tar', 'TAR629G1079' => 'tar', 'TAR629G3413' => 'tar', 'THA.LOC104804249' => 'tha', 'THA.LOC104808315' => 'tha', 'THA.LOC104809238' => 'tha', 'THA.LOC104825484' => 'tha', 'Thecc.01G025500' => 'tca', 'Thecc.03G015800' => 'tca', 'Thecc.03G018000' => 'tca', 'Thecc.03G134800' => 'tca', 'Thecc.04G014700' => 'tca', 'Thhalv10006991m.g' => 'esa', 'Thhalv10012707m.g' => 'esa', 'Thhalv10015739m.g' => 'esa', 'Thhalv10024553m.g' => 'esa', 'Thhalv10024673m.g' => 'esa', 'Thhalv10029187m.g' => 'esa', 'TPR.G12971' => 'tpr', 'TPR.G29396' => 'tpr', 'TPR.G33376' => 'tpr', 'TPR.G35508' => 'tpr', 'TPR.G35516' => 'tpr', 'TPR.G37317' => 'tpr', 'TPR.G37389' => 'tpr', 'TPR.G37523' => 'tpr', 'TPR.G559' => 'tpr', 'TWI14G0070' => 'twi', 'TWI14G0729' => 'twi', 'TWI18G0596' => 'twi', 'TWI39G0780' => 'twi', 'TWI39G0850' => 'twi', 'TWI73G1052' => 'twi', 'unitig_52.g17485' => 'ugi', 'unitig_61.g26355' => 'ugi', 'vmacro01040' => 'vma', 'vmacro16731' => 'vma', 'vmacro18270' => 'vma', 'vmacro19142' => 'vma', 'vmacro19407' => 'vma', 'vmacro19408' => 'vma', 'vmacro21899' => 'vma', 'vmacro21900' => 'vma', 'vmacro21901' => 'vma', 'VMungo0251G0490' => 'vmu', 'VMungo0251G1748' => 'vmu', 'VMungo1309G0421' => 'vmu', 'Zm00001eb086500' => 'zma', 'Zm00001eb150680' => 'zma', 'Zm00001eb162330' => 'zma', 'Zm00001eb203130' => 'zma', 'Zm00001eb369480' => 'zma', 'Zm00001eb382340' => 'zma', 'Zm00001eb416360' => 'zma' ), 'gf_id' => 'HOM05D000902', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000902' ), 'data_identifier' => 'HOM05D000902', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000902', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '663', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02470' => 'bna', 'A01p16260' => 'bna', 'A02p01680' => 'bna', 'A03p16600' => 'bna', 'A03p55660' => 'bna', 'A03p64160' => 'bna', 'A03p64170' => 'bna', 'A08p31900' => 'bna', 'A09p59530' => 'bna', 'A10p08230' => 'bna', 'A10p25090' => 'bna', 'Aa31LG3G7100' => 'aar', 'Aa31LG3G7110' => 'aar', 'Aa31LG6G13160' => 'aar', 'Aa31LG7G10770' => 'aar', 'Aa31LG7G3830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2723' => 'aag', 'Actinidia08045' => 'ach', 'Actinidia08888' => 'ach', 'Actinidia18333' => 'ach', 'Actinidia19334' => 'ach', 'Actinidia25552' => 'ach', 'Actinidia26089' => 'ach', 'Actinidia30615' => 'ach', 'Actinidia30616' => 'ach', 'Actinidia33083' => 'ach', 'Actinidia35762' => 'ach', 'Ah.02g110620' => 'amhyb', 'Ah.11g046390' => 'amhyb', 'AL1G31670' => 'aly', 'AL6G23730' => 'aly', 'AL7G14740' => 'aly', 'AL7G14750' => 'aly', 'AL7G14760' => 'aly', 'AL7G28220' => 'aly', 'AL8G24940' => 'aly', 'Aqoxy3G01665' => 'aox', 'Aqoxy3G02853' => 'aox', 'Aqoxy5G01513' => 'aox', 'Aqoxy5G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8SKA4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ75LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKDA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0LJZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7REX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZP4YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWX7I5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2QKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS0L9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPCD8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q161UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC7XCF' => 'arhy', 'AT1G19100' => 'ath', 'AT4G24970' => 'ath', 'AT4G36270' => 'ath', 'AT4G36280' => 'ath', 'AT4G36290' => 'ath', 'AT5G13130' => 'ath', 'AT5G50780' => 'ath', 'ATR0582G266' => 'atr', 'ATR0661G195' => 'atr', 'ATR1152G031' => 'atr', 'Atru.chr11.2382' => 'acertr', 'Atru.chr12.2337' => 'acertr', 'Atru.chr3.744' => 'acertr', 'Atru.chr6.1870' => 'acertr', 'Atru.chr9.2515' => 'acertr', 'AUR62004120' => 'cqu', 'AUR62005667' => 'cqu', 'AUR62007634' => 'cqu', 'AUR62008186' => 'cqu', 'AUR62008187' => 'cqu', 'AUR62008188' => 'cqu', 'AUR62027954' => 'cqu', 'AUR62028766' => 'cqu', 'AUR62028767' => 'cqu', 'AUR62028768' => 'cqu', 'AUR62028886' => 'cqu', 'AUR62029563' => 'cqu', 'AUR62038832' => 'cqu', 'BcaB01g04149' => 'bca', 'BcaB03g12940' => 'bca', 'BcaB03g13090' => 'bca', 'BcaB03g14466' => 'bca', 'BcaB05g24035' => 'bca', 'BcaC01g06050' => 'bca', 'BcaC04g19148' => 'bca', 'BcaC04g20761' => 'bca', 'BcaC06g32845' => 'bca', 'BcaC07g41274' => 'bca', 'BcaC09g50827' => 'bca', 'BcaNung00741' => 'bca', 'BcaNung00742' => 'bca', 'BcaNung01859' => 'bca', 'BcaNung03985' => 'bca', 'BcaNung03989' => 'bca', 'BcaNung05661' => 'bca', 'BolC1t00257H' => 'bol', 'BolC1t01956H' => 'bol', 'BolC2t06534H' => 'bol', 'BolC3t14334H' => 'bol', 'BolC5t30451H' => 'bol', 'BolC7t45880H' => 'bol', 'BolC7t46586H' => 'bol', 'BolC8t49301H' => 'bol', 'BolC8t51837H' => 'bol', 'BolC9t56822H' => 'bol', 'BolC9t59235H' => 'bol', 'BraA01t00234Z' => 'bra', 'BraA01t01563Z' => 'bra', 'BraA02t05147Z' => 'bra', 'BraA03t10947Z' => 'bra', 'BraA03t14633Z' => 'bra', 'BraA08t35112Z' => 'bra', 'BraA09t41330Z' => 'bra', 'BraA10t44570Z' => 'bra', 'C01p02670' => 'bna', 'C01p20260' => 'bna', 'C02p05890' => 'bna', 'C03p19530' => 'bna', 'C05p17470' => 'bna', 'C07p53900' => 'bna', 'C07p61630' => 'bna', 'C08p16800' => 'bna', 'C08p42810' => 'bna', 'C09p39480' => 'bna', 'C09p63980' => 'bna', 'CAN.G1001.7' => 'can', 'CAN.G1034.55' => 'can', 'CAN.G143.7' => 'can', 'CAN.G3340.1' => 'can', 'CAN.G358.19' => 'can', 'CAN.G373.2' => 'can', 'CAN.G674.16' => 'can', 'CAN.G674.17' => 'can', 'CAN.G674.18' => 'can', 'CAN.G732.2' => 'can', 'CAN.G732.3' => 'can', 'CAN.G993.39' => 'can', 'CANSAT01G2052' => 'cansat', 'CANSAT80G0070' => 'cansat', 'CANSAT80G0483' => 'cansat', 'CANSAT80G0625' => 'cansat', 'CARHR019690' => 'chi', 'CARHR080280' => 'chi', 'CARHR152750' => 'chi', 'CARHR152760' => 'chi', 'CARHR152770' => 'chi', 'CARHR200340' => 'chi', 'CARHR232370' => 'chi', 'CARHR244670' => 'chi', 'CARHR244680' => 'chi', 'CARHR257520' => 'chi', 'Carub.0001s1872' => 'cru', 'Carub.0006s1130' => 'cru', 'Carub.0007s0396' => 'cru', 'Carub.0007s0397' => 'cru', 'Carub.0007s1608' => 'cru', 'Carub.0008s1068' => 'cru', 'Carub.0008s1077' => 'cru', 'Ca_16158_v3' => 'car', 'Ca_17571_v3' => 'car', 'Ca_21936_v3' => 'car', 'Ca_22350_v3' => 'car', 'CBR_g22445' => 'cbr', 'CBR_g26290' => 'cbr', 'Cc04_g09610' => 'ccan', 'Cc04_g12280' => 'ccan', 'Cc07_g10230' => 'ccan', 'CDE02G0093' => 'cde', 'CDE02G0701' => 'cde', 'CDE04G1050' => 'cde', 'CDE05G1833' => 'cde', 'CDE05G3058' => 'cde', 'CDE05G3380' => 'cde', 'CDE06G0536' => 'cde', 'Cfa006923' => 'cfa', 'Cfa009402' => 'cfa', 'Cfa018751' => 'cfa', 'Cfa019164' => 'cfa', 'Cfa022935' => 'cfa', 'Ciclev10019081m.g' => 'ccl', 'Ciclev10025076m.g' => 'ccl', 'Ciclev10030712m.g' => 'ccl', 'Ciclev10033760m.g' => 'ccl', 'CiPaw.05G105600' => 'cil', 'CiPaw.08G136700' => 'cil', 'CiPaw.11G003900' => 'cil', 'CiPaw.11G023700' => 'cil', 'CiPaw.12G003700' => 'cil', 'ClCG06G017100' => 'cla', 'ClCG06G018110' => 'cla', 'ClCG07G008800' => 'cla', 'ClCG07G015330' => 'cla', 'COL.COLO4_13698' => 'col', 'COL.COLO4_16659' => 'col', 'COL.COLO4_21986' => 'col', 'COL.COLO4_24049' => 'col', 'COL.COLO4_29061' => 'col', 'COL.COLO4_29075' => 'col', 'COL.COLO4_30094' => 'col', 'Cpa.g.c33689' => 'cpa', 'Cpa.g.sc108.39' => 'cpa', 'Cpa.g.sc108.41' => 'cpa', 'Cpa.g.sc1163.1' => 'cpa', 'Cpa.g.sc4.155' => 'cpa', 'Cpa.g.sc6.194' => 'cpa', 'CsaV3_1G000340' => 'csa', 'CsaV3_1G001400' => 'csa', 'CsaV3_4G002220' => 'csa', 'CsaV3_4G005370' => 'csa', 'CSS0007487' => 'camsi', 'CSS0008066' => 'camsi', 'CSS0009120' => 'camsi', 'CSS0015512' => 'camsi', 'CSS0022409' => 'camsi', 'CSS0025358' => 'camsi', 'CSS0044547' => 'camsi', 'DCAR_013057' => 'dca', 'DCAR_015058' => 'dca', 'DCAR_016027' => 'dca', 'DCAR_017327' => 'dca', 'DCAR_020743' => 'dca', 'DCAR_026157' => 'dca', 'DCAR_032339' => 'dca', 'DCAR_032340' => 'dca', 'Dinv11200' => 'din', 'Dinv11201' => 'din', 'Dinv20631' => 'din', 'Dinv23182' => 'din', 'Dinv33466' => 'din', 'Dinv33583' => 'din', 'Dinv38565' => 'din', 'Duzib068G0200' => 'dzi', 'Duzib147G0132' => 'dzi', 'Duzib147G0635' => 'dzi', 'Duzib205G1670' => 'dzi', 'Duzib251G0606' => 'dzi', 'ECA232G3336' => 'eca', 'ECA232G3763' => 'eca', 'ECA232G4845' => 'eca', 'ECA234G1607' => 'eca', 'ECA246G0932' => 'eca', 'ECA247G0781' => 'eca', 'ECA247G1932' => 'eca', 'ECA247G2079' => 'eca', 'ECA247G3338' => 'eca', 'ECA247G4115' => 'eca', 'EL10Ac3g06552' => 'bvu', 'EL10Ac5g10721' => 'bvu', 'EL10Ac5g10722' => 'bvu', 'EL10Ac5g10723' => 'bvu', 'EL10Ac5g11361' => 'bvu', 'EL10Ac6g13553' => 'bvu', 'EL10As8g23872' => 'bvu', 'Eucgr.B00250' => 'egr', 'Eucgr.B00251' => 'egr', 'Eucgr.B03533' => 'egr', 'Eucgr.I02381' => 'egr', 'Eucgr.K02700' => 'egr', 'FAN02G0174' => 'fan', 'FAN02G3146' => 'fan', 'FAN04G1672' => 'fan', 'FAN04G2273' => 'fan', 'FAN05G2791' => 'fan', 'FAN05G4035' => 'fan', 'FAN07G0834' => 'fan', 'FAN08G1198' => 'fan', 'FAN09G4182' => 'fan', 'FAN12G0496' => 'fan', 'FAN13G1027' => 'fan', 'FAN13G2951' => 'fan', 'FAN14G0705' => 'fan', 'FAN14G0720' => 'fan', 'FAN17G0201' => 'fan', 'FAN17G2665' => 'fan', 'FAN18G1456' => 'fan', 'FAN18G1525' => 'fan', 'FAN18G3500' => 'fan', 'FAN28G2670' => 'fan', 'FvH4_1g12391' => 'fve', 'FvH4_4g23220' => 'fve', 'FvH4_5g08810' => 'fve', 'FvH4_5g28960' => 'fve', 'FvH4_6g42820' => 'fve', 'FvH4_6g51110' => 'fve', 'Glyma.02G051802' => 'gma', 'Glyma.04G185300' => 'gma', 'Glyma.05G202900' => 'gma', 'Glyma.08G010300' => 'gma', 'Glyma.16G131900' => 'gma', 'Glyma.17G087900' => 'gma', 'Gohir.A07G048600' => 'ghi', 'Gohir.A11G179000' => 'ghi', 'Gohir.A12G140900' => 'ghi', 'Gohir.A12G140950' => 'ghi', 'Gohir.A12G191700' => 'ghi', 'Gohir.A13G086300' => 'ghi', 'Gohir.D07G052900' => 'ghi', 'Gohir.D11G186600' => 'ghi', 'Gohir.D12G145575' => 'ghi', 'Gohir.D12G145650' => 'ghi', 'Gohir.D12G145725' => 'ghi', 'Gohir.D12G194050' => 'ghi', 'Gohir.D13G091800' => 'ghi', 'Gorai.001G055900' => 'gra', 'Gorai.007G198400' => 'gra', 'Gorai.008G157000' => 'gra', 'Gorai.008G157100' => 'gra', 'Gorai.008G208700' => 'gra', 'Gorai.010G138700' => 'gra', 'GSVIVG01000977001' => 'vvi', 'GSVIVG01007708001' => 'vvi', 'GSVIVG01008587001' => 'vvi', 'GSVIVG01018849001' => 'vvi', 'GSVIVG01032432001' => 'vvi', 'HanXRQChr02g0034131' => 'han', 'HanXRQChr02g0035981' => 'han', 'HanXRQChr02g0035991' => 'han', 'HanXRQChr05g0155611' => 'han', 'HanXRQChr05g0155621' => 'han', 'HanXRQChr08g0236501' => 'han', 'HanXRQChr09g0261321' => 'han', 'HanXRQChr09g0272081' => 'han', 'HanXRQChr10g0310741' => 'han', 'HanXRQChr11g0325591' => 'han', 'HanXRQChr12g0385691' => 'han', 'HanXRQChr13g0387801' => 'han', 'HanXRQChr15g0463011' => 'han', 'Haze_03826' => 'cav', 'Haze_03827' => 'cav', 'Haze_07183' => 'cav', 'Haze_07537' => 'cav', 'Haze_07539' => 'cav', 'Haze_12461' => 'cav', 'Haze_16115' => 'cav', 'Haze_16808' => 'cav', 'Haze_18531' => 'cav', 'Hma1.2p1_0046F.1_g026700' => 'hma', 'Hma1.2p1_0046F.1_g026710' => 'hma', 'Hma1.2p1_0168F.1_g074340' => 'hma', 'Hma1.2p1_0266F.1_g107030' => 'hma', 'Hma1.2p1_0266F.1_g107060' => 'hma', 'Hma1.2p1_0275F.1_g110510' => 'hma', 'Hma1.2p1_0592F.1_g185490' => 'hma', 'Hma1.2p1_0592F.1_g185500' => 'hma', 'Hma1.2p1_0592F.1_g185510' => 'hma', 'Hma1.2p1_0592F.1_g185520' => 'hma', 'Hma1.2p1_0592F.1_g185530' => 'hma', 'Hma1.2p1_0818F.1_g223450' => 'hma', 'HPP92_009708' => 'vpl', 'HPP92_009793' => 'vpl', 'HPP92_009796' => 'vpl', 'HPP92_009797' => 'vpl', 'HPP92_014940' => 'vpl', 'HPP92_014988' => 'vpl', 'Hund02463' => 'sun', 'Hund02760' => 'sun', 'Hund05071' => 'sun', 'Hund10108' => 'sun', 'Hund11204' => 'sun', 'Hund14016' => 'sun', 'Hund16464' => 'sun', 'Lalb_Chr09g0333391' => 'lal', 'Lalb_Chr11g0070461' => 'lal', 'Lalb_Chr12g0201671' => 'lal', 'Lalb_Chr13g0297161' => 'lal', 'Lj1g0002823' => 'lja', 'Lj3C1074T6' => 'lonja', 'Lj4A212T28' => 'lonja', 'Lj4g0005516' => 'lja', 'Lj4g0013705' => 'lja', 'Lj4g0027865' => 'lja', 'Lj5C92G16' => 'lonja', 'Lj5C92T12' => 'lonja', 'Lj7C596T3' => 'lonja', 'Lj9A446G59' => 'lonja', 'Lj9A482G21' => 'lonja', 'Lsat_1_v5_gn_1_28261' => 'lsa', 'Lsat_1_v5_gn_1_28281' => 'lsa', 'Lsat_1_v5_gn_1_32721' => 'lsa', 'Lsat_1_v5_gn_4_151760' => 'lsa', 'Lsat_1_v5_gn_4_2120' => 'lsa', 'Lsat_1_v5_gn_4_75761' => 'lsa', 'Lsat_1_v5_gn_5_10920' => 'lsa', 'Manes.02G099900' => 'mes', 'Manes.11G096200' => 'mes', 'Manes.12G007200' => 'mes', 'Manes.14G048300' => 'mes', 'Manes.17G114700' => 'mes', 'Mapoly0002s0070' => 'mpo', 'Mapoly0029s0099' => 'mpo', 'MBI07_g24742_MAGBIO' => 'mbi', 'MBI10_g27988_MAGBIO' => 'mbi', 'MBI11_g13057_MAGBIO' => 'mbi', 'MD02G1137200' => 'mdo', 'MD06G1137200' => 'mdo', 'MD07G1122300' => 'mdo', 'MD09G1078200' => 'mdo', 'MD13G1123700' => 'mdo', 'MD14G1151900' => 'mdo', 'MD17G1030900' => 'mdo', 'MD17G1068200' => 'mdo', 'MD17G1068600' => 'mdo', 'Medtr3g077540' => 'mtr', 'Medtr4g105530' => 'mtr', 'Medtr8g076580' => 'mtr', 'Medtr8g076590' => 'mtr', 'Medtr8g096410' => 'mtr', 'MELO3C016411.2' => 'cme', 'MELO3C017780.2' => 'cme', 'MELO3C022560.2' => 'cme', 'MELO3C026187.2' => 'cme', 'MELO3C026286.2' => 'cme', 'MELO3C032854.2' => 'cme', 'Migut.H02495' => 'egut', 'Migut.I00561' => 'egut', 'Migut.K01015' => 'egut', 'Migut.K01016' => 'egut', 'Migut.L00743' => 'egut', 'Migut.L00744' => 'egut', 'Migut.L00746' => 'egut', 'Migut.L00798' => 'egut', 'Migut.L00799' => 'egut', 'Migut.N02096' => 'egut', 'MSTRG.11259' => 'ama', 'MSTRG.23142' => 'ama', 'MSTRG.2499' => 'ama', 'Nitab4.5_0000003g0730' => 'nta', 'Nitab4.5_0000137g0020' => 'nta', 'Nitab4.5_0000721g0210' => 'nta', 'Nitab4.5_0000723g0050' => 'nta', 'Nitab4.5_0000913g0070' => 'nta', 'Nitab4.5_0001332g0040' => 'nta', 'Nitab4.5_0001771g0050' => 'nta', 'Nitab4.5_0001918g0050' => 'nta', 'Nitab4.5_0002686g0030' => 'nta', 'Nitab4.5_0003156g0020' => 'nta', 'Nitab4.5_0003383g0040' => 'nta', 'Nitab4.5_0003918g0010' => 'nta', 'Nitab4.5_0006760g0010' => 'nta', 'Nn1g05981' => 'nnu', 'Nn1g06288' => 'nnu', 'Nn3g16371' => 'nnu', 'Nn3g16786' => 'nnu', 'Nn4g22232' => 'nnu', 'Oeu005144.1' => 'oeu', 'Oeu005145.1' => 'oeu', 'Oeu011348.1' => 'oeu', 'Oeu016415.1' => 'oeu', 'Oeu023501.1' => 'oeu', 'Oeu044473.1' => 'oeu', 'Oeu048892.2' => 'oeu', 'Os01g0549200' => 'osa', 'Os02g0469300' => 'osa', 'Os04g0311100' => 'osa', 'Os06g0474900' => 'osa', 'Os10g0181700' => 'osa', 'Os11g0454800' => 'osa', 'Peaxi162Scf00037g00714' => 'pax', 'Peaxi162Scf00084g01217' => 'pax', 'Peaxi162Scf00257g00217' => 'pax', 'Peaxi162Scf00516g00215' => 'pax', 'Peaxi162Scf00689g00123' => 'pax', 'PGR044G2719' => 'pgr', 'PGR083G1360' => 'pgr', 'PGR102G2849' => 'pgr', 'PGR119G2534' => 'pgr', 'PGSC0003DMG400003538' => 'stu', 'PGSC0003DMG400028138' => 'stu', 'PGSC0003DMG400031732' => 'stu', 'PGSC0003DMG400038165' => 'stu', 'Phvul.002G284600' => 'pvu', 'Phvul.003G258200' => 'pvu', 'Phvul.009G176500' => 'pvu', 'Potri.003G167201' => 'ptr', 'Potri.005G118400' => 'ptr', 'Potri.012G089000' => 'ptr', 'Potri.012G102800' => 'ptr', 'Potri.015G079400' => 'ptr', 'Potri.015G100900' => 'ptr', 'Pp3c14_9810' => 'ppa', 'Pp3c15_10450' => 'ppa', 'Pp3c20_19150' => 'ppa', 'Pp3c23_12740' => 'ppa', 'Pp3c23_6310' => 'ppa', 'Pp3c24_3720' => 'ppa', 'Pp3c27_2580' => 'ppa', 'Pp3c9_8990' => 'ppa', 'PRCOL_00002854' => 'pco', 'Prupe.1G221200' => 'ppe', 'Prupe.3G289000' => 'ppe', 'Prupe.5G147000' => 'ppe', 'Prupe.6G157300' => 'ppe', 'Prupe.7G163400' => 'ppe', 'Psat0s2177g0040' => 'psa', 'Psat3g174760' => 'psa', 'Psat3g192160' => 'psa', 'Psat4g058520' => 'psa', 'Psat4g096840' => 'psa', 'Psat7g037320' => 'psa', 'PSO017G1274' => 'pso', 'PSO017G5166' => 'pso', 'PSO063G4558' => 'pso', 'PSO170G4458' => 'pso', 'PSO170G5005' => 'pso', 'PSO210G6156' => 'pso', 'PSO210G6635' => 'pso', 'PSO210G7397' => 'pso', 'PSO210G7700' => 'pso', 'PSO455G0035' => 'pso', 'PSO455G0180' => 'pso', 'PSO478G4515' => 'pso', 'PSO832G1305' => 'pso', 'PSO832G3489' => 'pso', 'QL02p075247' => 'qlo', 'QL03p051148' => 'qlo', 'QL05p010313' => 'qlo', 'QL06p034627' => 'qlo', 'QL10p001889' => 'qlo', 'QL10p010846' => 'qlo', 'RcHm_v2.0_Chr1g0350621' => 'rch', 'RcHm_v2.0_Chr1g0350641' => 'rch', 'RcHm_v2.0_Chr2g0092891' => 'rch', 'RcHm_v2.0_Chr2g0100251' => 'rch', 'RcHm_v2.0_Chr2g0158661' => 'rch', 'RcHm_v2.0_Chr2g0172741' => 'rch', 'RcHm_v2.0_Chr4g0429571' => 'rch', 'RcHm_v2.0_Chr5g0042471' => 'rch', 'RcHm_v2.0_Chr7g0189451' => 'rch', 'Rhsim08G0052000' => 'rsi', 'Rhsim08G0174400' => 'rsi', 'Rhsim08G0193200' => 'rsi', 'Rhsim10G0214800' => 'rsi', 'Rhsim10G0214900' => 'rsi', 'Rhsim10G0215000' => 'rsi', 'Rhsim12G0022900' => 'rsi', 'Rhsim12G0177500' => 'rsi', 'Rhsim12G0177700' => 'rsi', 'Sabra03G0122600' => 'sbr', 'Sabra05G0097400' => 'sbr', 'Sabra12G0064100' => 'sbr', 'Sabra15G0121300' => 'sbr', 'SalBow2G0642' => 'sbo', 'SalBow5G2667' => 'sbo', 'SalBow5G4873' => 'sbo', 'SalBow8G2395' => 'sbo', 'Sc03g0003290' => 'sci', 'Sc10g0010130' => 'sci', 'Sc22g0003650' => 'sci', 'Sed0001603' => 'sed', 'Sed0004259' => 'sed', 'Sed0006789' => 'sed', 'Sed0011838' => 'sed', 'Sed0012964' => 'sed', 'Sed0016383' => 'sed', 'Sed0019010' => 'sed', 'Sed0020188' => 'sed', 'SEGI_04702' => 'sgi', 'SEGI_17231' => 'sgi', 'SEGI_18877' => 'sgi', 'SEGI_25196' => 'sgi', 'SEGI_25515' => 'sgi', 'SEGI_28445' => 'sgi', 'SEGI_37452' => 'sgi', 'SGA_v2.0_scaffold188G40336' => 'sas', 'SGA_v2.0_scaffold228G43247' => 'sas', 'SGA_v2.0_scaffold280G46853' => 'sas', 'SGA_v2.0_scaffold34G13808' => 'sas', 'SGA_v2.0_scaffold40G15576' => 'sas', 'SGA_v2.0_scaffold611G53188' => 'sas', 'SGA_v2.0_scaffold78G25461' => 'sas', 'SGA_v2.0_scaffold90G27888' => 'sas', 'SHI08601' => 'shi', 'SHI08606' => 'shi', 'SHI17117' => 'shi', 'SHI17119' => 'shi', 'SMO118G0201' => 'smo', 'SMO169G0247' => 'smo', 'SMO176G0006' => 'smo', 'SMO176G0015' => 'smo', 'SMO202G0006' => 'smo', 'SMO240G0050' => 'smo', 'SMO286G0009' => 'smo', 'SMO338G0033' => 'smo', 'SMO356G0533' => 'smo', 'SMO364G0382' => 'smo', 'SMO367G0166' => 'smo', 'SMO367G1098' => 'smo', 'Solyc01g009920.3' => 'sly', 'Solyc01g099300.3' => 'sly', 'Solyc02g084700.3' => 'sly', 'Solyc03g097520.3' => 'sly', 'Solyc06g071580.3' => 'sly', 'Solyc10g081760.3' => 'sly', 'Sopen01g005480' => 'spe', 'Sopen01g042850' => 'spe', 'Sopen02g029370' => 'spe', 'Sopen03g028280' => 'spe', 'Sopen06g027870' => 'spe', 'Sopen10g032270' => 'spe', 'Sp5g18180' => 'spa', 'Sp6g12880' => 'spa', 'Sp6g30850' => 'spa', 'Sp7g22960' => 'spa', 'Sp7g34010' => 'spa', 'SpUn1326_0010' => 'spa', 'TAR371G0242' => 'tar', 'TAR622G0638' => 'tar', 'TAR628G1548' => 'tar', 'TAR629G1079' => 'tar', 'TAR629G3413' => 'tar', 'THA.LOC104804249' => 'tha', 'THA.LOC104808315' => 'tha', 'THA.LOC104809238' => 'tha', 'THA.LOC104825484' => 'tha', 'Thecc.01G025500' => 'tca', 'Thecc.03G015800' => 'tca', 'Thecc.03G018000' => 'tca', 'Thecc.03G134800' => 'tca', 'Thecc.04G014700' => 'tca', 'Thhalv10006991m.g' => 'esa', 'Thhalv10012707m.g' => 'esa', 'Thhalv10015739m.g' => 'esa', 'Thhalv10024553m.g' => 'esa', 'Thhalv10024673m.g' => 'esa', 'Thhalv10029187m.g' => 'esa', 'TPR.G12971' => 'tpr', 'TPR.G29396' => 'tpr', 'TPR.G33376' => 'tpr', 'TPR.G35508' => 'tpr', 'TPR.G35516' => 'tpr', 'TPR.G37317' => 'tpr', 'TPR.G37389' => 'tpr', 'TPR.G37523' => 'tpr', 'TPR.G559' => 'tpr', 'TWI14G0070' => 'twi', 'TWI14G0729' => 'twi', 'TWI18G0596' => 'twi', 'TWI39G0780' => 'twi', 'TWI39G0850' => 'twi', 'TWI73G1052' => 'twi', 'unitig_52.g17485' => 'ugi', 'unitig_61.g26355' => 'ugi', 'vmacro01040' => 'vma', 'vmacro16731' => 'vma', 'vmacro18270' => 'vma', 'vmacro19142' => 'vma', 'vmacro19407' => 'vma', 'vmacro19408' => 'vma', 'vmacro21899' => 'vma', 'vmacro21900' => 'vma', 'vmacro21901' => 'vma', 'VMungo0251G0490' => 'vmu', 'VMungo0251G1748' => 'vmu', 'VMungo1309G0421' => 'vmu', 'Zm00001eb086500' => 'zma', 'Zm00001eb150680' => 'zma', 'Zm00001eb162330' => 'zma', 'Zm00001eb203130' => 'zma', 'Zm00001eb369480' => 'zma', 'Zm00001eb382340' => 'zma', 'Zm00001eb416360' => 'zma' ) $gf_id = 'HOM05D000902' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000902' ) $data_identifier = 'HOM05D000902' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 13, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 10, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 6, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 9, 'hma' => (int) 12, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 4, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 6, 'ppa' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 6, 'rch' => (int) 9, 'rsi' => (int) 9, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 12, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 3, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416360' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000902', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '663', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02470' => 'bna', 'A01p16260' => 'bna', 'A02p01680' => 'bna', 'A03p16600' => 'bna', 'A03p55660' => 'bna', 'A03p64160' => 'bna', 'A03p64170' => 'bna', 'A08p31900' => 'bna', 'A09p59530' => 'bna', 'A10p08230' => 'bna', 'A10p25090' => 'bna', 'Aa31LG3G7100' => 'aar', 'Aa31LG3G7110' => 'aar', 'Aa31LG6G13160' => 'aar', 'Aa31LG7G10770' => 'aar', 'Aa31LG7G3830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2723' => 'aag', 'Actinidia08045' => 'ach', 'Actinidia08888' => 'ach', 'Actinidia18333' => 'ach', 'Actinidia19334' => 'ach', 'Actinidia25552' => 'ach', 'Actinidia26089' => 'ach', 'Actinidia30615' => 'ach', 'Actinidia30616' => 'ach', 'Actinidia33083' => 'ach', 'Actinidia35762' => 'ach', 'Ah.02g110620' => 'amhyb', 'Ah.11g046390' => 'amhyb', 'AL1G31670' => 'aly', 'AL6G23730' => 'aly', 'AL7G14740' => 'aly', 'AL7G14750' => 'aly', 'AL7G14760' => 'aly', 'AL7G28220' => 'aly', 'AL8G24940' => 'aly', 'Aqoxy3G01665' => 'aox', 'Aqoxy3G02853' => 'aox', 'Aqoxy5G01513' => 'aox', 'Aqoxy5G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8SKA4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ75LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKDA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0LJZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7REX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZP4YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWX7I5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2QKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS0L9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPCD8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q161UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC7XCF' => 'arhy', 'AT1G19100' => 'ath', 'AT4G24970' => 'ath', 'AT4G36270' => 'ath', 'AT4G36280' => 'ath', 'AT4G36290' => 'ath', 'AT5G13130' => 'ath', 'AT5G50780' => 'ath', 'ATR0582G266' => 'atr', 'ATR0661G195' => 'atr', 'ATR1152G031' => 'atr', 'Atru.chr11.2382' => 'acertr', 'Atru.chr12.2337' => 'acertr', 'Atru.chr3.744' => 'acertr', 'Atru.chr6.1870' => 'acertr', 'Atru.chr9.2515' => 'acertr', 'AUR62004120' => 'cqu', 'AUR62005667' => 'cqu', 'AUR62007634' => 'cqu', 'AUR62008186' => 'cqu', 'AUR62008187' => 'cqu', 'AUR62008188' => 'cqu', 'AUR62027954' => 'cqu', 'AUR62028766' => 'cqu', 'AUR62028767' => 'cqu', 'AUR62028768' => 'cqu', 'AUR62028886' => 'cqu', 'AUR62029563' => 'cqu', 'AUR62038832' => 'cqu', 'BcaB01g04149' => 'bca', 'BcaB03g12940' => 'bca', 'BcaB03g13090' => 'bca', 'BcaB03g14466' => 'bca', 'BcaB05g24035' => 'bca', 'BcaC01g06050' => 'bca', 'BcaC04g19148' => 'bca', 'BcaC04g20761' => 'bca', 'BcaC06g32845' => 'bca', 'BcaC07g41274' => 'bca', 'BcaC09g50827' => 'bca', 'BcaNung00741' => 'bca', 'BcaNung00742' => 'bca', 'BcaNung01859' => 'bca', 'BcaNung03985' => 'bca', 'BcaNung03989' => 'bca', 'BcaNung05661' => 'bca', 'BolC1t00257H' => 'bol', 'BolC1t01956H' => 'bol', 'BolC2t06534H' => 'bol', 'BolC3t14334H' => 'bol', 'BolC5t30451H' => 'bol', 'BolC7t45880H' => 'bol', 'BolC7t46586H' => 'bol', 'BolC8t49301H' => 'bol', 'BolC8t51837H' => 'bol', 'BolC9t56822H' => 'bol', 'BolC9t59235H' => 'bol', 'BraA01t00234Z' => 'bra', 'BraA01t01563Z' => 'bra', 'BraA02t05147Z' => 'bra', 'BraA03t10947Z' => 'bra', 'BraA03t14633Z' => 'bra', 'BraA08t35112Z' => 'bra', 'BraA09t41330Z' => 'bra', 'BraA10t44570Z' => 'bra', 'C01p02670' => 'bna', 'C01p20260' => 'bna', 'C02p05890' => 'bna', 'C03p19530' => 'bna', 'C05p17470' => 'bna', 'C07p53900' => 'bna', 'C07p61630' => 'bna', 'C08p16800' => 'bna', 'C08p42810' => 'bna', 'C09p39480' => 'bna', 'C09p63980' => 'bna', 'CAN.G1001.7' => 'can', 'CAN.G1034.55' => 'can', 'CAN.G143.7' => 'can', 'CAN.G3340.1' => 'can', 'CAN.G358.19' => 'can', 'CAN.G373.2' => 'can', 'CAN.G674.16' => 'can', 'CAN.G674.17' => 'can', 'CAN.G674.18' => 'can', 'CAN.G732.2' => 'can', 'CAN.G732.3' => 'can', 'CAN.G993.39' => 'can', 'CANSAT01G2052' => 'cansat', 'CANSAT80G0070' => 'cansat', 'CANSAT80G0483' => 'cansat', 'CANSAT80G0625' => 'cansat', 'CARHR019690' => 'chi', 'CARHR080280' => 'chi', 'CARHR152750' => 'chi', 'CARHR152760' => 'chi', 'CARHR152770' => 'chi', 'CARHR200340' => 'chi', 'CARHR232370' => 'chi', 'CARHR244670' => 'chi', 'CARHR244680' => 'chi', 'CARHR257520' => 'chi', 'Carub.0001s1872' => 'cru', 'Carub.0006s1130' => 'cru', 'Carub.0007s0396' => 'cru', 'Carub.0007s0397' => 'cru', 'Carub.0007s1608' => 'cru', 'Carub.0008s1068' => 'cru', 'Carub.0008s1077' => 'cru', 'Ca_16158_v3' => 'car', 'Ca_17571_v3' => 'car', 'Ca_21936_v3' => 'car', 'Ca_22350_v3' => 'car', 'CBR_g22445' => 'cbr', 'CBR_g26290' => 'cbr', 'Cc04_g09610' => 'ccan', 'Cc04_g12280' => 'ccan', 'Cc07_g10230' => 'ccan', 'CDE02G0093' => 'cde', 'CDE02G0701' => 'cde', 'CDE04G1050' => 'cde', 'CDE05G1833' => 'cde', 'CDE05G3058' => 'cde', 'CDE05G3380' => 'cde', 'CDE06G0536' => 'cde', 'Cfa006923' => 'cfa', 'Cfa009402' => 'cfa', 'Cfa018751' => 'cfa', 'Cfa019164' => 'cfa', 'Cfa022935' => 'cfa', 'Ciclev10019081m.g' => 'ccl', 'Ciclev10025076m.g' => 'ccl', 'Ciclev10030712m.g' => 'ccl', 'Ciclev10033760m.g' => 'ccl', 'CiPaw.05G105600' => 'cil', 'CiPaw.08G136700' => 'cil', 'CiPaw.11G003900' => 'cil', 'CiPaw.11G023700' => 'cil', 'CiPaw.12G003700' => 'cil', 'ClCG06G017100' => 'cla', 'ClCG06G018110' => 'cla', 'ClCG07G008800' => 'cla', 'ClCG07G015330' => 'cla', 'COL.COLO4_13698' => 'col', 'COL.COLO4_16659' => 'col', 'COL.COLO4_21986' => 'col', 'COL.COLO4_24049' => 'col', 'COL.COLO4_29061' => 'col', 'COL.COLO4_29075' => 'col', 'COL.COLO4_30094' => 'col', 'Cpa.g.c33689' => 'cpa', 'Cpa.g.sc108.39' => 'cpa', 'Cpa.g.sc108.41' => 'cpa', 'Cpa.g.sc1163.1' => 'cpa', 'Cpa.g.sc4.155' => 'cpa', 'Cpa.g.sc6.194' => 'cpa', 'CsaV3_1G000340' => 'csa', 'CsaV3_1G001400' => 'csa', 'CsaV3_4G002220' => 'csa', 'CsaV3_4G005370' => 'csa', 'CSS0007487' => 'camsi', 'CSS0008066' => 'camsi', 'CSS0009120' => 'camsi', 'CSS0015512' => 'camsi', 'CSS0022409' => 'camsi', 'CSS0025358' => 'camsi', 'CSS0044547' => 'camsi', 'DCAR_013057' => 'dca', 'DCAR_015058' => 'dca', 'DCAR_016027' => 'dca', 'DCAR_017327' => 'dca', 'DCAR_020743' => 'dca', 'DCAR_026157' => 'dca', 'DCAR_032339' => 'dca', 'DCAR_032340' => 'dca', 'Dinv11200' => 'din', 'Dinv11201' => 'din', 'Dinv20631' => 'din', 'Dinv23182' => 'din', 'Dinv33466' => 'din', 'Dinv33583' => 'din', 'Dinv38565' => 'din', 'Duzib068G0200' => 'dzi', 'Duzib147G0132' => 'dzi', 'Duzib147G0635' => 'dzi', 'Duzib205G1670' => 'dzi', 'Duzib251G0606' => 'dzi', 'ECA232G3336' => 'eca', 'ECA232G3763' => 'eca', 'ECA232G4845' => 'eca', 'ECA234G1607' => 'eca', 'ECA246G0932' => 'eca', 'ECA247G0781' => 'eca', 'ECA247G1932' => 'eca', 'ECA247G2079' => 'eca', 'ECA247G3338' => 'eca', 'ECA247G4115' => 'eca', 'EL10Ac3g06552' => 'bvu', 'EL10Ac5g10721' => 'bvu', 'EL10Ac5g10722' => 'bvu', 'EL10Ac5g10723' => 'bvu', 'EL10Ac5g11361' => 'bvu', 'EL10Ac6g13553' => 'bvu', 'EL10As8g23872' => 'bvu', 'Eucgr.B00250' => 'egr', 'Eucgr.B00251' => 'egr', 'Eucgr.B03533' => 'egr', 'Eucgr.I02381' => 'egr', 'Eucgr.K02700' => 'egr', 'FAN02G0174' => 'fan', 'FAN02G3146' => 'fan', 'FAN04G1672' => 'fan', 'FAN04G2273' => 'fan', 'FAN05G2791' => 'fan', 'FAN05G4035' => 'fan', 'FAN07G0834' => 'fan', 'FAN08G1198' => 'fan', 'FAN09G4182' => 'fan', 'FAN12G0496' => 'fan', 'FAN13G1027' => 'fan', 'FAN13G2951' => 'fan', 'FAN14G0705' => 'fan', 'FAN14G0720' => 'fan', 'FAN17G0201' => 'fan', 'FAN17G2665' => 'fan', 'FAN18G1456' => 'fan', 'FAN18G1525' => 'fan', 'FAN18G3500' => 'fan', 'FAN28G2670' => 'fan', 'FvH4_1g12391' => 'fve', 'FvH4_4g23220' => 'fve', 'FvH4_5g08810' => 'fve', 'FvH4_5g28960' => 'fve', 'FvH4_6g42820' => 'fve', 'FvH4_6g51110' => 'fve', 'Glyma.02G051802' => 'gma', 'Glyma.04G185300' => 'gma', 'Glyma.05G202900' => 'gma', 'Glyma.08G010300' => 'gma', 'Glyma.16G131900' => 'gma', 'Glyma.17G087900' => 'gma', 'Gohir.A07G048600' => 'ghi', 'Gohir.A11G179000' => 'ghi', 'Gohir.A12G140900' => 'ghi', 'Gohir.A12G140950' => 'ghi', 'Gohir.A12G191700' => 'ghi', 'Gohir.A13G086300' => 'ghi', 'Gohir.D07G052900' => 'ghi', 'Gohir.D11G186600' => 'ghi', 'Gohir.D12G145575' => 'ghi', 'Gohir.D12G145650' => 'ghi', 'Gohir.D12G145725' => 'ghi', 'Gohir.D12G194050' => 'ghi', 'Gohir.D13G091800' => 'ghi', 'Gorai.001G055900' => 'gra', 'Gorai.007G198400' => 'gra', 'Gorai.008G157000' => 'gra', 'Gorai.008G157100' => 'gra', 'Gorai.008G208700' => 'gra', 'Gorai.010G138700' => 'gra', 'GSVIVG01000977001' => 'vvi', 'GSVIVG01007708001' => 'vvi', 'GSVIVG01008587001' => 'vvi', 'GSVIVG01018849001' => 'vvi', 'GSVIVG01032432001' => 'vvi', 'HanXRQChr02g0034131' => 'han', 'HanXRQChr02g0035981' => 'han', 'HanXRQChr02g0035991' => 'han', 'HanXRQChr05g0155611' => 'han', 'HanXRQChr05g0155621' => 'han', 'HanXRQChr08g0236501' => 'han', 'HanXRQChr09g0261321' => 'han', 'HanXRQChr09g0272081' => 'han', 'HanXRQChr10g0310741' => 'han', 'HanXRQChr11g0325591' => 'han', 'HanXRQChr12g0385691' => 'han', 'HanXRQChr13g0387801' => 'han', 'HanXRQChr15g0463011' => 'han', 'Haze_03826' => 'cav', 'Haze_03827' => 'cav', 'Haze_07183' => 'cav', 'Haze_07537' => 'cav', 'Haze_07539' => 'cav', 'Haze_12461' => 'cav', 'Haze_16115' => 'cav', 'Haze_16808' => 'cav', 'Haze_18531' => 'cav', 'Hma1.2p1_0046F.1_g026700' => 'hma', 'Hma1.2p1_0046F.1_g026710' => 'hma', 'Hma1.2p1_0168F.1_g074340' => 'hma', 'Hma1.2p1_0266F.1_g107030' => 'hma', 'Hma1.2p1_0266F.1_g107060' => 'hma', 'Hma1.2p1_0275F.1_g110510' => 'hma', 'Hma1.2p1_0592F.1_g185490' => 'hma', 'Hma1.2p1_0592F.1_g185500' => 'hma', 'Hma1.2p1_0592F.1_g185510' => 'hma', 'Hma1.2p1_0592F.1_g185520' => 'hma', 'Hma1.2p1_0592F.1_g185530' => 'hma', 'Hma1.2p1_0818F.1_g223450' => 'hma', 'HPP92_009708' => 'vpl', 'HPP92_009793' => 'vpl', 'HPP92_009796' => 'vpl', 'HPP92_009797' => 'vpl', 'HPP92_014940' => 'vpl', 'HPP92_014988' => 'vpl', 'Hund02463' => 'sun', 'Hund02760' => 'sun', 'Hund05071' => 'sun', 'Hund10108' => 'sun', 'Hund11204' => 'sun', 'Hund14016' => 'sun', 'Hund16464' => 'sun', 'Lalb_Chr09g0333391' => 'lal', 'Lalb_Chr11g0070461' => 'lal', 'Lalb_Chr12g0201671' => 'lal', 'Lalb_Chr13g0297161' => 'lal', 'Lj1g0002823' => 'lja', 'Lj3C1074T6' => 'lonja', 'Lj4A212T28' => 'lonja', 'Lj4g0005516' => 'lja', 'Lj4g0013705' => 'lja', 'Lj4g0027865' => 'lja', 'Lj5C92G16' => 'lonja', 'Lj5C92T12' => 'lonja', 'Lj7C596T3' => 'lonja', 'Lj9A446G59' => 'lonja', 'Lj9A482G21' => 'lonja', 'Lsat_1_v5_gn_1_28261' => 'lsa', 'Lsat_1_v5_gn_1_28281' => 'lsa', 'Lsat_1_v5_gn_1_32721' => 'lsa', 'Lsat_1_v5_gn_4_151760' => 'lsa', 'Lsat_1_v5_gn_4_2120' => 'lsa', 'Lsat_1_v5_gn_4_75761' => 'lsa', 'Lsat_1_v5_gn_5_10920' => 'lsa', 'Manes.02G099900' => 'mes', 'Manes.11G096200' => 'mes', 'Manes.12G007200' => 'mes', 'Manes.14G048300' => 'mes', 'Manes.17G114700' => 'mes', 'Mapoly0002s0070' => 'mpo', 'Mapoly0029s0099' => 'mpo', 'MBI07_g24742_MAGBIO' => 'mbi', 'MBI10_g27988_MAGBIO' => 'mbi', 'MBI11_g13057_MAGBIO' => 'mbi', 'MD02G1137200' => 'mdo', 'MD06G1137200' => 'mdo', 'MD07G1122300' => 'mdo', 'MD09G1078200' => 'mdo', 'MD13G1123700' => 'mdo', 'MD14G1151900' => 'mdo', 'MD17G1030900' => 'mdo', 'MD17G1068200' => 'mdo', 'MD17G1068600' => 'mdo', 'Medtr3g077540' => 'mtr', 'Medtr4g105530' => 'mtr', 'Medtr8g076580' => 'mtr', 'Medtr8g076590' => 'mtr', 'Medtr8g096410' => 'mtr', 'MELO3C016411.2' => 'cme', 'MELO3C017780.2' => 'cme', 'MELO3C022560.2' => 'cme', 'MELO3C026187.2' => 'cme', 'MELO3C026286.2' => 'cme', 'MELO3C032854.2' => 'cme', 'Migut.H02495' => 'egut', 'Migut.I00561' => 'egut', 'Migut.K01015' => 'egut', 'Migut.K01016' => 'egut', 'Migut.L00743' => 'egut', 'Migut.L00744' => 'egut', 'Migut.L00746' => 'egut', 'Migut.L00798' => 'egut', 'Migut.L00799' => 'egut', 'Migut.N02096' => 'egut', 'MSTRG.11259' => 'ama', 'MSTRG.23142' => 'ama', 'MSTRG.2499' => 'ama', 'Nitab4.5_0000003g0730' => 'nta', 'Nitab4.5_0000137g0020' => 'nta', 'Nitab4.5_0000721g0210' => 'nta', 'Nitab4.5_0000723g0050' => 'nta', 'Nitab4.5_0000913g0070' => 'nta', 'Nitab4.5_0001332g0040' => 'nta', 'Nitab4.5_0001771g0050' => 'nta', 'Nitab4.5_0001918g0050' => 'nta', 'Nitab4.5_0002686g0030' => 'nta', 'Nitab4.5_0003156g0020' => 'nta', 'Nitab4.5_0003383g0040' => 'nta', 'Nitab4.5_0003918g0010' => 'nta', 'Nitab4.5_0006760g0010' => 'nta', 'Nn1g05981' => 'nnu', 'Nn1g06288' => 'nnu', 'Nn3g16371' => 'nnu', 'Nn3g16786' => 'nnu', 'Nn4g22232' => 'nnu', 'Oeu005144.1' => 'oeu', 'Oeu005145.1' => 'oeu', 'Oeu011348.1' => 'oeu', 'Oeu016415.1' => 'oeu', 'Oeu023501.1' => 'oeu', 'Oeu044473.1' => 'oeu', 'Oeu048892.2' => 'oeu', 'Os01g0549200' => 'osa', 'Os02g0469300' => 'osa', 'Os04g0311100' => 'osa', 'Os06g0474900' => 'osa', 'Os10g0181700' => 'osa', 'Os11g0454800' => 'osa', 'Peaxi162Scf00037g00714' => 'pax', 'Peaxi162Scf00084g01217' => 'pax', 'Peaxi162Scf00257g00217' => 'pax', 'Peaxi162Scf00516g00215' => 'pax', 'Peaxi162Scf00689g00123' => 'pax', 'PGR044G2719' => 'pgr', 'PGR083G1360' => 'pgr', 'PGR102G2849' => 'pgr', 'PGR119G2534' => 'pgr', 'PGSC0003DMG400003538' => 'stu', 'PGSC0003DMG400028138' => 'stu', 'PGSC0003DMG400031732' => 'stu', 'PGSC0003DMG400038165' => 'stu', 'Phvul.002G284600' => 'pvu', 'Phvul.003G258200' => 'pvu', 'Phvul.009G176500' => 'pvu', 'Potri.003G167201' => 'ptr', 'Potri.005G118400' => 'ptr', 'Potri.012G089000' => 'ptr', 'Potri.012G102800' => 'ptr', 'Potri.015G079400' => 'ptr', 'Potri.015G100900' => 'ptr', 'Pp3c14_9810' => 'ppa', 'Pp3c15_10450' => 'ppa', 'Pp3c20_19150' => 'ppa', 'Pp3c23_12740' => 'ppa', 'Pp3c23_6310' => 'ppa', 'Pp3c24_3720' => 'ppa', 'Pp3c27_2580' => 'ppa', 'Pp3c9_8990' => 'ppa', 'PRCOL_00002854' => 'pco', 'Prupe.1G221200' => 'ppe', 'Prupe.3G289000' => 'ppe', 'Prupe.5G147000' => 'ppe', 'Prupe.6G157300' => 'ppe', 'Prupe.7G163400' => 'ppe', 'Psat0s2177g0040' => 'psa', 'Psat3g174760' => 'psa', 'Psat3g192160' => 'psa', 'Psat4g058520' => 'psa', 'Psat4g096840' => 'psa', 'Psat7g037320' => 'psa', 'PSO017G1274' => 'pso', 'PSO017G5166' => 'pso', 'PSO063G4558' => 'pso', 'PSO170G4458' => 'pso', 'PSO170G5005' => 'pso', 'PSO210G6156' => 'pso', 'PSO210G6635' => 'pso', 'PSO210G7397' => 'pso', 'PSO210G7700' => 'pso', 'PSO455G0035' => 'pso', 'PSO455G0180' => 'pso', 'PSO478G4515' => 'pso', 'PSO832G1305' => 'pso', 'PSO832G3489' => 'pso', 'QL02p075247' => 'qlo', 'QL03p051148' => 'qlo', 'QL05p010313' => 'qlo', 'QL06p034627' => 'qlo', 'QL10p001889' => 'qlo', 'QL10p010846' => 'qlo', 'RcHm_v2.0_Chr1g0350621' => 'rch', 'RcHm_v2.0_Chr1g0350641' => 'rch', 'RcHm_v2.0_Chr2g0092891' => 'rch', 'RcHm_v2.0_Chr2g0100251' => 'rch', 'RcHm_v2.0_Chr2g0158661' => 'rch', 'RcHm_v2.0_Chr2g0172741' => 'rch', 'RcHm_v2.0_Chr4g0429571' => 'rch', 'RcHm_v2.0_Chr5g0042471' => 'rch', 'RcHm_v2.0_Chr7g0189451' => 'rch', 'Rhsim08G0052000' => 'rsi', 'Rhsim08G0174400' => 'rsi', 'Rhsim08G0193200' => 'rsi', 'Rhsim10G0214800' => 'rsi', 'Rhsim10G0214900' => 'rsi', 'Rhsim10G0215000' => 'rsi', 'Rhsim12G0022900' => 'rsi', 'Rhsim12G0177500' => 'rsi', 'Rhsim12G0177700' => 'rsi', 'Sabra03G0122600' => 'sbr', 'Sabra05G0097400' => 'sbr', 'Sabra12G0064100' => 'sbr', 'Sabra15G0121300' => 'sbr', 'SalBow2G0642' => 'sbo', 'SalBow5G2667' => 'sbo', 'SalBow5G4873' => 'sbo', 'SalBow8G2395' => 'sbo', 'Sc03g0003290' => 'sci', 'Sc10g0010130' => 'sci', 'Sc22g0003650' => 'sci', 'Sed0001603' => 'sed', 'Sed0004259' => 'sed', 'Sed0006789' => 'sed', 'Sed0011838' => 'sed', 'Sed0012964' => 'sed', 'Sed0016383' => 'sed', 'Sed0019010' => 'sed', 'Sed0020188' => 'sed', 'SEGI_04702' => 'sgi', 'SEGI_17231' => 'sgi', 'SEGI_18877' => 'sgi', 'SEGI_25196' => 'sgi', 'SEGI_25515' => 'sgi', 'SEGI_28445' => 'sgi', 'SEGI_37452' => 'sgi', 'SGA_v2.0_scaffold188G40336' => 'sas', 'SGA_v2.0_scaffold228G43247' => 'sas', 'SGA_v2.0_scaffold280G46853' => 'sas', 'SGA_v2.0_scaffold34G13808' => 'sas', 'SGA_v2.0_scaffold40G15576' => 'sas', 'SGA_v2.0_scaffold611G53188' => 'sas', 'SGA_v2.0_scaffold78G25461' => 'sas', 'SGA_v2.0_scaffold90G27888' => 'sas', 'SHI08601' => 'shi', 'SHI08606' => 'shi', 'SHI17117' => 'shi', 'SHI17119' => 'shi', 'SMO118G0201' => 'smo', 'SMO169G0247' => 'smo', 'SMO176G0006' => 'smo', 'SMO176G0015' => 'smo', 'SMO202G0006' => 'smo', 'SMO240G0050' => 'smo', 'SMO286G0009' => 'smo', 'SMO338G0033' => 'smo', 'SMO356G0533' => 'smo', 'SMO364G0382' => 'smo', 'SMO367G0166' => 'smo', 'SMO367G1098' => 'smo', 'Solyc01g009920.3' => 'sly', 'Solyc01g099300.3' => 'sly', 'Solyc02g084700.3' => 'sly', 'Solyc03g097520.3' => 'sly', 'Solyc06g071580.3' => 'sly', 'Solyc10g081760.3' => 'sly', 'Sopen01g005480' => 'spe', 'Sopen01g042850' => 'spe', 'Sopen02g029370' => 'spe', 'Sopen03g028280' => 'spe', 'Sopen06g027870' => 'spe', 'Sopen10g032270' => 'spe', 'Sp5g18180' => 'spa', 'Sp6g12880' => 'spa', 'Sp6g30850' => 'spa', 'Sp7g22960' => 'spa', 'Sp7g34010' => 'spa', 'SpUn1326_0010' => 'spa', 'TAR371G0242' => 'tar', 'TAR622G0638' => 'tar', 'TAR628G1548' => 'tar', 'TAR629G1079' => 'tar', 'TAR629G3413' => 'tar', 'THA.LOC104804249' => 'tha', 'THA.LOC104808315' => 'tha', 'THA.LOC104809238' => 'tha', 'THA.LOC104825484' => 'tha', 'Thecc.01G025500' => 'tca', 'Thecc.03G015800' => 'tca', 'Thecc.03G018000' => 'tca', 'Thecc.03G134800' => 'tca', 'Thecc.04G014700' => 'tca', 'Thhalv10006991m.g' => 'esa', 'Thhalv10012707m.g' => 'esa', 'Thhalv10015739m.g' => 'esa', 'Thhalv10024553m.g' => 'esa', 'Thhalv10024673m.g' => 'esa', 'Thhalv10029187m.g' => 'esa', 'TPR.G12971' => 'tpr', 'TPR.G29396' => 'tpr', 'TPR.G33376' => 'tpr', 'TPR.G35508' => 'tpr', 'TPR.G35516' => 'tpr', 'TPR.G37317' => 'tpr', 'TPR.G37389' => 'tpr', 'TPR.G37523' => 'tpr', 'TPR.G559' => 'tpr', 'TWI14G0070' => 'twi', 'TWI14G0729' => 'twi', 'TWI18G0596' => 'twi', 'TWI39G0780' => 'twi', 'TWI39G0850' => 'twi', 'TWI73G1052' => 'twi', 'unitig_52.g17485' => 'ugi', 'unitig_61.g26355' => 'ugi', 'vmacro01040' => 'vma', 'vmacro16731' => 'vma', 'vmacro18270' => 'vma', 'vmacro19142' => 'vma', 'vmacro19407' => 'vma', 'vmacro19408' => 'vma', 'vmacro21899' => 'vma', 'vmacro21900' => 'vma', 'vmacro21901' => 'vma', 'VMungo0251G0490' => 'vmu', 'VMungo0251G1748' => 'vmu', 'VMungo1309G0421' => 'vmu', 'Zm00001eb086500' => 'zma', 'Zm00001eb150680' => 'zma', 'Zm00001eb162330' => 'zma', 'Zm00001eb203130' => 'zma', 'Zm00001eb369480' => 'zma', 'Zm00001eb382340' => 'zma', 'Zm00001eb416360' => 'zma' ), 'gf_id' => 'HOM05D000902', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000902' ), 'data_identifier' => 'HOM05D000902', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000902', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '663', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02470' => 'bna', 'A01p16260' => 'bna', 'A02p01680' => 'bna', 'A03p16600' => 'bna', 'A03p55660' => 'bna', 'A03p64160' => 'bna', 'A03p64170' => 'bna', 'A08p31900' => 'bna', 'A09p59530' => 'bna', 'A10p08230' => 'bna', 'A10p25090' => 'bna', 'Aa31LG3G7100' => 'aar', 'Aa31LG3G7110' => 'aar', 'Aa31LG6G13160' => 'aar', 'Aa31LG7G10770' => 'aar', 'Aa31LG7G3830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2723' => 'aag', 'Actinidia08045' => 'ach', 'Actinidia08888' => 'ach', 'Actinidia18333' => 'ach', 'Actinidia19334' => 'ach', 'Actinidia25552' => 'ach', 'Actinidia26089' => 'ach', 'Actinidia30615' => 'ach', 'Actinidia30616' => 'ach', 'Actinidia33083' => 'ach', 'Actinidia35762' => 'ach', 'Ah.02g110620' => 'amhyb', 'Ah.11g046390' => 'amhyb', 'AL1G31670' => 'aly', 'AL6G23730' => 'aly', 'AL7G14740' => 'aly', 'AL7G14750' => 'aly', 'AL7G14760' => 'aly', 'AL7G28220' => 'aly', 'AL8G24940' => 'aly', 'Aqoxy3G01665' => 'aox', 'Aqoxy3G02853' => 'aox', 'Aqoxy5G01513' => 'aox', 'Aqoxy5G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8SKA4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ75LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKDA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0LJZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7REX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZP4YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWX7I5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2QKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS0L9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPCD8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q161UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC7XCF' => 'arhy', 'AT1G19100' => 'ath', 'AT4G24970' => 'ath', 'AT4G36270' => 'ath', 'AT4G36280' => 'ath', 'AT4G36290' => 'ath', 'AT5G13130' => 'ath', 'AT5G50780' => 'ath', 'ATR0582G266' => 'atr', 'ATR0661G195' => 'atr', 'ATR1152G031' => 'atr', 'Atru.chr11.2382' => 'acertr', 'Atru.chr12.2337' => 'acertr', 'Atru.chr3.744' => 'acertr', 'Atru.chr6.1870' => 'acertr', 'Atru.chr9.2515' => 'acertr', 'AUR62004120' => 'cqu', 'AUR62005667' => 'cqu', 'AUR62007634' => 'cqu', 'AUR62008186' => 'cqu', 'AUR62008187' => 'cqu', 'AUR62008188' => 'cqu', 'AUR62027954' => 'cqu', 'AUR62028766' => 'cqu', 'AUR62028767' => 'cqu', 'AUR62028768' => 'cqu', 'AUR62028886' => 'cqu', 'AUR62029563' => 'cqu', 'AUR62038832' => 'cqu', 'BcaB01g04149' => 'bca', 'BcaB03g12940' => 'bca', 'BcaB03g13090' => 'bca', 'BcaB03g14466' => 'bca', 'BcaB05g24035' => 'bca', 'BcaC01g06050' => 'bca', 'BcaC04g19148' => 'bca', 'BcaC04g20761' => 'bca', 'BcaC06g32845' => 'bca', 'BcaC07g41274' => 'bca', 'BcaC09g50827' => 'bca', 'BcaNung00741' => 'bca', 'BcaNung00742' => 'bca', 'BcaNung01859' => 'bca', 'BcaNung03985' => 'bca', 'BcaNung03989' => 'bca', 'BcaNung05661' => 'bca', 'BolC1t00257H' => 'bol', 'BolC1t01956H' => 'bol', 'BolC2t06534H' => 'bol', 'BolC3t14334H' => 'bol', 'BolC5t30451H' => 'bol', 'BolC7t45880H' => 'bol', 'BolC7t46586H' => 'bol', 'BolC8t49301H' => 'bol', 'BolC8t51837H' => 'bol', 'BolC9t56822H' => 'bol', 'BolC9t59235H' => 'bol', 'BraA01t00234Z' => 'bra', 'BraA01t01563Z' => 'bra', 'BraA02t05147Z' => 'bra', 'BraA03t10947Z' => 'bra', 'BraA03t14633Z' => 'bra', 'BraA08t35112Z' => 'bra', 'BraA09t41330Z' => 'bra', 'BraA10t44570Z' => 'bra', 'C01p02670' => 'bna', 'C01p20260' => 'bna', 'C02p05890' => 'bna', 'C03p19530' => 'bna', 'C05p17470' => 'bna', 'C07p53900' => 'bna', 'C07p61630' => 'bna', 'C08p16800' => 'bna', 'C08p42810' => 'bna', 'C09p39480' => 'bna', 'C09p63980' => 'bna', 'CAN.G1001.7' => 'can', 'CAN.G1034.55' => 'can', 'CAN.G143.7' => 'can', 'CAN.G3340.1' => 'can', 'CAN.G358.19' => 'can', 'CAN.G373.2' => 'can', 'CAN.G674.16' => 'can', 'CAN.G674.17' => 'can', 'CAN.G674.18' => 'can', 'CAN.G732.2' => 'can', 'CAN.G732.3' => 'can', 'CAN.G993.39' => 'can', 'CANSAT01G2052' => 'cansat', 'CANSAT80G0070' => 'cansat', 'CANSAT80G0483' => 'cansat', 'CANSAT80G0625' => 'cansat', 'CARHR019690' => 'chi', 'CARHR080280' => 'chi', 'CARHR152750' => 'chi', 'CARHR152760' => 'chi', 'CARHR152770' => 'chi', 'CARHR200340' => 'chi', 'CARHR232370' => 'chi', 'CARHR244670' => 'chi', 'CARHR244680' => 'chi', 'CARHR257520' => 'chi', 'Carub.0001s1872' => 'cru', 'Carub.0006s1130' => 'cru', 'Carub.0007s0396' => 'cru', 'Carub.0007s0397' => 'cru', 'Carub.0007s1608' => 'cru', 'Carub.0008s1068' => 'cru', 'Carub.0008s1077' => 'cru', 'Ca_16158_v3' => 'car', 'Ca_17571_v3' => 'car', 'Ca_21936_v3' => 'car', 'Ca_22350_v3' => 'car', 'CBR_g22445' => 'cbr', 'CBR_g26290' => 'cbr', 'Cc04_g09610' => 'ccan', 'Cc04_g12280' => 'ccan', 'Cc07_g10230' => 'ccan', 'CDE02G0093' => 'cde', 'CDE02G0701' => 'cde', 'CDE04G1050' => 'cde', 'CDE05G1833' => 'cde', 'CDE05G3058' => 'cde', 'CDE05G3380' => 'cde', 'CDE06G0536' => 'cde', 'Cfa006923' => 'cfa', 'Cfa009402' => 'cfa', 'Cfa018751' => 'cfa', 'Cfa019164' => 'cfa', 'Cfa022935' => 'cfa', 'Ciclev10019081m.g' => 'ccl', 'Ciclev10025076m.g' => 'ccl', 'Ciclev10030712m.g' => 'ccl', 'Ciclev10033760m.g' => 'ccl', 'CiPaw.05G105600' => 'cil', 'CiPaw.08G136700' => 'cil', 'CiPaw.11G003900' => 'cil', 'CiPaw.11G023700' => 'cil', 'CiPaw.12G003700' => 'cil', 'ClCG06G017100' => 'cla', 'ClCG06G018110' => 'cla', 'ClCG07G008800' => 'cla', 'ClCG07G015330' => 'cla', 'COL.COLO4_13698' => 'col', 'COL.COLO4_16659' => 'col', 'COL.COLO4_21986' => 'col', 'COL.COLO4_24049' => 'col', 'COL.COLO4_29061' => 'col', 'COL.COLO4_29075' => 'col', 'COL.COLO4_30094' => 'col', 'Cpa.g.c33689' => 'cpa', 'Cpa.g.sc108.39' => 'cpa', 'Cpa.g.sc108.41' => 'cpa', 'Cpa.g.sc1163.1' => 'cpa', 'Cpa.g.sc4.155' => 'cpa', 'Cpa.g.sc6.194' => 'cpa', 'CsaV3_1G000340' => 'csa', 'CsaV3_1G001400' => 'csa', 'CsaV3_4G002220' => 'csa', 'CsaV3_4G005370' => 'csa', 'CSS0007487' => 'camsi', 'CSS0008066' => 'camsi', 'CSS0009120' => 'camsi', 'CSS0015512' => 'camsi', 'CSS0022409' => 'camsi', 'CSS0025358' => 'camsi', 'CSS0044547' => 'camsi', 'DCAR_013057' => 'dca', 'DCAR_015058' => 'dca', 'DCAR_016027' => 'dca', 'DCAR_017327' => 'dca', 'DCAR_020743' => 'dca', 'DCAR_026157' => 'dca', 'DCAR_032339' => 'dca', 'DCAR_032340' => 'dca', 'Dinv11200' => 'din', 'Dinv11201' => 'din', 'Dinv20631' => 'din', 'Dinv23182' => 'din', 'Dinv33466' => 'din', 'Dinv33583' => 'din', 'Dinv38565' => 'din', 'Duzib068G0200' => 'dzi', 'Duzib147G0132' => 'dzi', 'Duzib147G0635' => 'dzi', 'Duzib205G1670' => 'dzi', 'Duzib251G0606' => 'dzi', 'ECA232G3336' => 'eca', 'ECA232G3763' => 'eca', 'ECA232G4845' => 'eca', 'ECA234G1607' => 'eca', 'ECA246G0932' => 'eca', 'ECA247G0781' => 'eca', 'ECA247G1932' => 'eca', 'ECA247G2079' => 'eca', 'ECA247G3338' => 'eca', 'ECA247G4115' => 'eca', 'EL10Ac3g06552' => 'bvu', 'EL10Ac5g10721' => 'bvu', 'EL10Ac5g10722' => 'bvu', 'EL10Ac5g10723' => 'bvu', 'EL10Ac5g11361' => 'bvu', 'EL10Ac6g13553' => 'bvu', 'EL10As8g23872' => 'bvu', 'Eucgr.B00250' => 'egr', 'Eucgr.B00251' => 'egr', 'Eucgr.B03533' => 'egr', 'Eucgr.I02381' => 'egr', 'Eucgr.K02700' => 'egr', 'FAN02G0174' => 'fan', 'FAN02G3146' => 'fan', 'FAN04G1672' => 'fan', 'FAN04G2273' => 'fan', 'FAN05G2791' => 'fan', 'FAN05G4035' => 'fan', 'FAN07G0834' => 'fan', 'FAN08G1198' => 'fan', 'FAN09G4182' => 'fan', 'FAN12G0496' => 'fan', 'FAN13G1027' => 'fan', 'FAN13G2951' => 'fan', 'FAN14G0705' => 'fan', 'FAN14G0720' => 'fan', 'FAN17G0201' => 'fan', 'FAN17G2665' => 'fan', 'FAN18G1456' => 'fan', 'FAN18G1525' => 'fan', 'FAN18G3500' => 'fan', 'FAN28G2670' => 'fan', 'FvH4_1g12391' => 'fve', 'FvH4_4g23220' => 'fve', 'FvH4_5g08810' => 'fve', 'FvH4_5g28960' => 'fve', 'FvH4_6g42820' => 'fve', 'FvH4_6g51110' => 'fve', 'Glyma.02G051802' => 'gma', 'Glyma.04G185300' => 'gma', 'Glyma.05G202900' => 'gma', 'Glyma.08G010300' => 'gma', 'Glyma.16G131900' => 'gma', 'Glyma.17G087900' => 'gma', 'Gohir.A07G048600' => 'ghi', 'Gohir.A11G179000' => 'ghi', 'Gohir.A12G140900' => 'ghi', 'Gohir.A12G140950' => 'ghi', 'Gohir.A12G191700' => 'ghi', 'Gohir.A13G086300' => 'ghi', 'Gohir.D07G052900' => 'ghi', 'Gohir.D11G186600' => 'ghi', 'Gohir.D12G145575' => 'ghi', 'Gohir.D12G145650' => 'ghi', 'Gohir.D12G145725' => 'ghi', 'Gohir.D12G194050' => 'ghi', 'Gohir.D13G091800' => 'ghi', 'Gorai.001G055900' => 'gra', 'Gorai.007G198400' => 'gra', 'Gorai.008G157000' => 'gra', 'Gorai.008G157100' => 'gra', 'Gorai.008G208700' => 'gra', 'Gorai.010G138700' => 'gra', 'GSVIVG01000977001' => 'vvi', 'GSVIVG01007708001' => 'vvi', 'GSVIVG01008587001' => 'vvi', 'GSVIVG01018849001' => 'vvi', 'GSVIVG01032432001' => 'vvi', 'HanXRQChr02g0034131' => 'han', 'HanXRQChr02g0035981' => 'han', 'HanXRQChr02g0035991' => 'han', 'HanXRQChr05g0155611' => 'han', 'HanXRQChr05g0155621' => 'han', 'HanXRQChr08g0236501' => 'han', 'HanXRQChr09g0261321' => 'han', 'HanXRQChr09g0272081' => 'han', 'HanXRQChr10g0310741' => 'han', 'HanXRQChr11g0325591' => 'han', 'HanXRQChr12g0385691' => 'han', 'HanXRQChr13g0387801' => 'han', 'HanXRQChr15g0463011' => 'han', 'Haze_03826' => 'cav', 'Haze_03827' => 'cav', 'Haze_07183' => 'cav', 'Haze_07537' => 'cav', 'Haze_07539' => 'cav', 'Haze_12461' => 'cav', 'Haze_16115' => 'cav', 'Haze_16808' => 'cav', 'Haze_18531' => 'cav', 'Hma1.2p1_0046F.1_g026700' => 'hma', 'Hma1.2p1_0046F.1_g026710' => 'hma', 'Hma1.2p1_0168F.1_g074340' => 'hma', 'Hma1.2p1_0266F.1_g107030' => 'hma', 'Hma1.2p1_0266F.1_g107060' => 'hma', 'Hma1.2p1_0275F.1_g110510' => 'hma', 'Hma1.2p1_0592F.1_g185490' => 'hma', 'Hma1.2p1_0592F.1_g185500' => 'hma', 'Hma1.2p1_0592F.1_g185510' => 'hma', 'Hma1.2p1_0592F.1_g185520' => 'hma', 'Hma1.2p1_0592F.1_g185530' => 'hma', 'Hma1.2p1_0818F.1_g223450' => 'hma', 'HPP92_009708' => 'vpl', 'HPP92_009793' => 'vpl', 'HPP92_009796' => 'vpl', 'HPP92_009797' => 'vpl', 'HPP92_014940' => 'vpl', 'HPP92_014988' => 'vpl', 'Hund02463' => 'sun', 'Hund02760' => 'sun', 'Hund05071' => 'sun', 'Hund10108' => 'sun', 'Hund11204' => 'sun', 'Hund14016' => 'sun', 'Hund16464' => 'sun', 'Lalb_Chr09g0333391' => 'lal', 'Lalb_Chr11g0070461' => 'lal', 'Lalb_Chr12g0201671' => 'lal', 'Lalb_Chr13g0297161' => 'lal', 'Lj1g0002823' => 'lja', 'Lj3C1074T6' => 'lonja', 'Lj4A212T28' => 'lonja', 'Lj4g0005516' => 'lja', 'Lj4g0013705' => 'lja', 'Lj4g0027865' => 'lja', 'Lj5C92G16' => 'lonja', 'Lj5C92T12' => 'lonja', 'Lj7C596T3' => 'lonja', 'Lj9A446G59' => 'lonja', 'Lj9A482G21' => 'lonja', 'Lsat_1_v5_gn_1_28261' => 'lsa', 'Lsat_1_v5_gn_1_28281' => 'lsa', 'Lsat_1_v5_gn_1_32721' => 'lsa', 'Lsat_1_v5_gn_4_151760' => 'lsa', 'Lsat_1_v5_gn_4_2120' => 'lsa', 'Lsat_1_v5_gn_4_75761' => 'lsa', 'Lsat_1_v5_gn_5_10920' => 'lsa', 'Manes.02G099900' => 'mes', 'Manes.11G096200' => 'mes', 'Manes.12G007200' => 'mes', 'Manes.14G048300' => 'mes', 'Manes.17G114700' => 'mes', 'Mapoly0002s0070' => 'mpo', 'Mapoly0029s0099' => 'mpo', 'MBI07_g24742_MAGBIO' => 'mbi', 'MBI10_g27988_MAGBIO' => 'mbi', 'MBI11_g13057_MAGBIO' => 'mbi', 'MD02G1137200' => 'mdo', 'MD06G1137200' => 'mdo', 'MD07G1122300' => 'mdo', 'MD09G1078200' => 'mdo', 'MD13G1123700' => 'mdo', 'MD14G1151900' => 'mdo', 'MD17G1030900' => 'mdo', 'MD17G1068200' => 'mdo', 'MD17G1068600' => 'mdo', 'Medtr3g077540' => 'mtr', 'Medtr4g105530' => 'mtr', 'Medtr8g076580' => 'mtr', 'Medtr8g076590' => 'mtr', 'Medtr8g096410' => 'mtr', 'MELO3C016411.2' => 'cme', 'MELO3C017780.2' => 'cme', 'MELO3C022560.2' => 'cme', 'MELO3C026187.2' => 'cme', 'MELO3C026286.2' => 'cme', 'MELO3C032854.2' => 'cme', 'Migut.H02495' => 'egut', 'Migut.I00561' => 'egut', 'Migut.K01015' => 'egut', 'Migut.K01016' => 'egut', 'Migut.L00743' => 'egut', 'Migut.L00744' => 'egut', 'Migut.L00746' => 'egut', 'Migut.L00798' => 'egut', 'Migut.L00799' => 'egut', 'Migut.N02096' => 'egut', 'MSTRG.11259' => 'ama', 'MSTRG.23142' => 'ama', 'MSTRG.2499' => 'ama', 'Nitab4.5_0000003g0730' => 'nta', 'Nitab4.5_0000137g0020' => 'nta', 'Nitab4.5_0000721g0210' => 'nta', 'Nitab4.5_0000723g0050' => 'nta', 'Nitab4.5_0000913g0070' => 'nta', 'Nitab4.5_0001332g0040' => 'nta', 'Nitab4.5_0001771g0050' => 'nta', 'Nitab4.5_0001918g0050' => 'nta', 'Nitab4.5_0002686g0030' => 'nta', 'Nitab4.5_0003156g0020' => 'nta', 'Nitab4.5_0003383g0040' => 'nta', 'Nitab4.5_0003918g0010' => 'nta', 'Nitab4.5_0006760g0010' => 'nta', 'Nn1g05981' => 'nnu', 'Nn1g06288' => 'nnu', 'Nn3g16371' => 'nnu', 'Nn3g16786' => 'nnu', 'Nn4g22232' => 'nnu', 'Oeu005144.1' => 'oeu', 'Oeu005145.1' => 'oeu', 'Oeu011348.1' => 'oeu', 'Oeu016415.1' => 'oeu', 'Oeu023501.1' => 'oeu', 'Oeu044473.1' => 'oeu', 'Oeu048892.2' => 'oeu', 'Os01g0549200' => 'osa', 'Os02g0469300' => 'osa', 'Os04g0311100' => 'osa', 'Os06g0474900' => 'osa', 'Os10g0181700' => 'osa', 'Os11g0454800' => 'osa', 'Peaxi162Scf00037g00714' => 'pax', 'Peaxi162Scf00084g01217' => 'pax', 'Peaxi162Scf00257g00217' => 'pax', 'Peaxi162Scf00516g00215' => 'pax', 'Peaxi162Scf00689g00123' => 'pax', 'PGR044G2719' => 'pgr', 'PGR083G1360' => 'pgr', 'PGR102G2849' => 'pgr', 'PGR119G2534' => 'pgr', 'PGSC0003DMG400003538' => 'stu', 'PGSC0003DMG400028138' => 'stu', 'PGSC0003DMG400031732' => 'stu', 'PGSC0003DMG400038165' => 'stu', 'Phvul.002G284600' => 'pvu', 'Phvul.003G258200' => 'pvu', 'Phvul.009G176500' => 'pvu', 'Potri.003G167201' => 'ptr', 'Potri.005G118400' => 'ptr', 'Potri.012G089000' => 'ptr', 'Potri.012G102800' => 'ptr', 'Potri.015G079400' => 'ptr', 'Potri.015G100900' => 'ptr', 'Pp3c14_9810' => 'ppa', 'Pp3c15_10450' => 'ppa', 'Pp3c20_19150' => 'ppa', 'Pp3c23_12740' => 'ppa', 'Pp3c23_6310' => 'ppa', 'Pp3c24_3720' => 'ppa', 'Pp3c27_2580' => 'ppa', 'Pp3c9_8990' => 'ppa', 'PRCOL_00002854' => 'pco', 'Prupe.1G221200' => 'ppe', 'Prupe.3G289000' => 'ppe', 'Prupe.5G147000' => 'ppe', 'Prupe.6G157300' => 'ppe', 'Prupe.7G163400' => 'ppe', 'Psat0s2177g0040' => 'psa', 'Psat3g174760' => 'psa', 'Psat3g192160' => 'psa', 'Psat4g058520' => 'psa', 'Psat4g096840' => 'psa', 'Psat7g037320' => 'psa', 'PSO017G1274' => 'pso', 'PSO017G5166' => 'pso', 'PSO063G4558' => 'pso', 'PSO170G4458' => 'pso', 'PSO170G5005' => 'pso', 'PSO210G6156' => 'pso', 'PSO210G6635' => 'pso', 'PSO210G7397' => 'pso', 'PSO210G7700' => 'pso', 'PSO455G0035' => 'pso', 'PSO455G0180' => 'pso', 'PSO478G4515' => 'pso', 'PSO832G1305' => 'pso', 'PSO832G3489' => 'pso', 'QL02p075247' => 'qlo', 'QL03p051148' => 'qlo', 'QL05p010313' => 'qlo', 'QL06p034627' => 'qlo', 'QL10p001889' => 'qlo', 'QL10p010846' => 'qlo', 'RcHm_v2.0_Chr1g0350621' => 'rch', 'RcHm_v2.0_Chr1g0350641' => 'rch', 'RcHm_v2.0_Chr2g0092891' => 'rch', 'RcHm_v2.0_Chr2g0100251' => 'rch', 'RcHm_v2.0_Chr2g0158661' => 'rch', 'RcHm_v2.0_Chr2g0172741' => 'rch', 'RcHm_v2.0_Chr4g0429571' => 'rch', 'RcHm_v2.0_Chr5g0042471' => 'rch', 'RcHm_v2.0_Chr7g0189451' => 'rch', 'Rhsim08G0052000' => 'rsi', 'Rhsim08G0174400' => 'rsi', 'Rhsim08G0193200' => 'rsi', 'Rhsim10G0214800' => 'rsi', 'Rhsim10G0214900' => 'rsi', 'Rhsim10G0215000' => 'rsi', 'Rhsim12G0022900' => 'rsi', 'Rhsim12G0177500' => 'rsi', 'Rhsim12G0177700' => 'rsi', 'Sabra03G0122600' => 'sbr', 'Sabra05G0097400' => 'sbr', 'Sabra12G0064100' => 'sbr', 'Sabra15G0121300' => 'sbr', 'SalBow2G0642' => 'sbo', 'SalBow5G2667' => 'sbo', 'SalBow5G4873' => 'sbo', 'SalBow8G2395' => 'sbo', 'Sc03g0003290' => 'sci', 'Sc10g0010130' => 'sci', 'Sc22g0003650' => 'sci', 'Sed0001603' => 'sed', 'Sed0004259' => 'sed', 'Sed0006789' => 'sed', 'Sed0011838' => 'sed', 'Sed0012964' => 'sed', 'Sed0016383' => 'sed', 'Sed0019010' => 'sed', 'Sed0020188' => 'sed', 'SEGI_04702' => 'sgi', 'SEGI_17231' => 'sgi', 'SEGI_18877' => 'sgi', 'SEGI_25196' => 'sgi', 'SEGI_25515' => 'sgi', 'SEGI_28445' => 'sgi', 'SEGI_37452' => 'sgi', 'SGA_v2.0_scaffold188G40336' => 'sas', 'SGA_v2.0_scaffold228G43247' => 'sas', 'SGA_v2.0_scaffold280G46853' => 'sas', 'SGA_v2.0_scaffold34G13808' => 'sas', 'SGA_v2.0_scaffold40G15576' => 'sas', 'SGA_v2.0_scaffold611G53188' => 'sas', 'SGA_v2.0_scaffold78G25461' => 'sas', 'SGA_v2.0_scaffold90G27888' => 'sas', 'SHI08601' => 'shi', 'SHI08606' => 'shi', 'SHI17117' => 'shi', 'SHI17119' => 'shi', 'SMO118G0201' => 'smo', 'SMO169G0247' => 'smo', 'SMO176G0006' => 'smo', 'SMO176G0015' => 'smo', 'SMO202G0006' => 'smo', 'SMO240G0050' => 'smo', 'SMO286G0009' => 'smo', 'SMO338G0033' => 'smo', 'SMO356G0533' => 'smo', 'SMO364G0382' => 'smo', 'SMO367G0166' => 'smo', 'SMO367G1098' => 'smo', 'Solyc01g009920.3' => 'sly', 'Solyc01g099300.3' => 'sly', 'Solyc02g084700.3' => 'sly', 'Solyc03g097520.3' => 'sly', 'Solyc06g071580.3' => 'sly', 'Solyc10g081760.3' => 'sly', 'Sopen01g005480' => 'spe', 'Sopen01g042850' => 'spe', 'Sopen02g029370' => 'spe', 'Sopen03g028280' => 'spe', 'Sopen06g027870' => 'spe', 'Sopen10g032270' => 'spe', 'Sp5g18180' => 'spa', 'Sp6g12880' => 'spa', 'Sp6g30850' => 'spa', 'Sp7g22960' => 'spa', 'Sp7g34010' => 'spa', 'SpUn1326_0010' => 'spa', 'TAR371G0242' => 'tar', 'TAR622G0638' => 'tar', 'TAR628G1548' => 'tar', 'TAR629G1079' => 'tar', 'TAR629G3413' => 'tar', 'THA.LOC104804249' => 'tha', 'THA.LOC104808315' => 'tha', 'THA.LOC104809238' => 'tha', 'THA.LOC104825484' => 'tha', 'Thecc.01G025500' => 'tca', 'Thecc.03G015800' => 'tca', 'Thecc.03G018000' => 'tca', 'Thecc.03G134800' => 'tca', 'Thecc.04G014700' => 'tca', 'Thhalv10006991m.g' => 'esa', 'Thhalv10012707m.g' => 'esa', 'Thhalv10015739m.g' => 'esa', 'Thhalv10024553m.g' => 'esa', 'Thhalv10024673m.g' => 'esa', 'Thhalv10029187m.g' => 'esa', 'TPR.G12971' => 'tpr', 'TPR.G29396' => 'tpr', 'TPR.G33376' => 'tpr', 'TPR.G35508' => 'tpr', 'TPR.G35516' => 'tpr', 'TPR.G37317' => 'tpr', 'TPR.G37389' => 'tpr', 'TPR.G37523' => 'tpr', 'TPR.G559' => 'tpr', 'TWI14G0070' => 'twi', 'TWI14G0729' => 'twi', 'TWI18G0596' => 'twi', 'TWI39G0780' => 'twi', 'TWI39G0850' => 'twi', 'TWI73G1052' => 'twi', 'unitig_52.g17485' => 'ugi', 'unitig_61.g26355' => 'ugi', 'vmacro01040' => 'vma', 'vmacro16731' => 'vma', 'vmacro18270' => 'vma', 'vmacro19142' => 'vma', 'vmacro19407' => 'vma', 'vmacro19408' => 'vma', 'vmacro21899' => 'vma', 'vmacro21900' => 'vma', 'vmacro21901' => 'vma', 'VMungo0251G0490' => 'vmu', 'VMungo0251G1748' => 'vmu', 'VMungo1309G0421' => 'vmu', 'Zm00001eb086500' => 'zma', 'Zm00001eb150680' => 'zma', 'Zm00001eb162330' => 'zma', 'Zm00001eb203130' => 'zma', 'Zm00001eb369480' => 'zma', 'Zm00001eb382340' => 'zma', 'Zm00001eb416360' => 'zma' ) $gf_id = 'HOM05D000902' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000902' ) $data_identifier = 'HOM05D000902' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 13, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 10, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 6, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 9, 'hma' => (int) 12, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 4, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 6, 'ppa' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 6, 'rch' => (int) 9, 'rsi' => (int) 9, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 12, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 3, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416360' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000902', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '663', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02470' => 'bna', 'A01p16260' => 'bna', 'A02p01680' => 'bna', 'A03p16600' => 'bna', 'A03p55660' => 'bna', 'A03p64160' => 'bna', 'A03p64170' => 'bna', 'A08p31900' => 'bna', 'A09p59530' => 'bna', 'A10p08230' => 'bna', 'A10p25090' => 'bna', 'Aa31LG3G7100' => 'aar', 'Aa31LG3G7110' => 'aar', 'Aa31LG6G13160' => 'aar', 'Aa31LG7G10770' => 'aar', 'Aa31LG7G3830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2723' => 'aag', 'Actinidia08045' => 'ach', 'Actinidia08888' => 'ach', 'Actinidia18333' => 'ach', 'Actinidia19334' => 'ach', 'Actinidia25552' => 'ach', 'Actinidia26089' => 'ach', 'Actinidia30615' => 'ach', 'Actinidia30616' => 'ach', 'Actinidia33083' => 'ach', 'Actinidia35762' => 'ach', 'Ah.02g110620' => 'amhyb', 'Ah.11g046390' => 'amhyb', 'AL1G31670' => 'aly', 'AL6G23730' => 'aly', 'AL7G14740' => 'aly', 'AL7G14750' => 'aly', 'AL7G14760' => 'aly', 'AL7G28220' => 'aly', 'AL8G24940' => 'aly', 'Aqoxy3G01665' => 'aox', 'Aqoxy3G02853' => 'aox', 'Aqoxy5G01513' => 'aox', 'Aqoxy5G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8SKA4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ75LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKDA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0LJZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7REX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZP4YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWX7I5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2QKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS0L9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPCD8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q161UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC7XCF' => 'arhy', 'AT1G19100' => 'ath', 'AT4G24970' => 'ath', 'AT4G36270' => 'ath', 'AT4G36280' => 'ath', 'AT4G36290' => 'ath', 'AT5G13130' => 'ath', 'AT5G50780' => 'ath', 'ATR0582G266' => 'atr', 'ATR0661G195' => 'atr', 'ATR1152G031' => 'atr', 'Atru.chr11.2382' => 'acertr', 'Atru.chr12.2337' => 'acertr', 'Atru.chr3.744' => 'acertr', 'Atru.chr6.1870' => 'acertr', 'Atru.chr9.2515' => 'acertr', 'AUR62004120' => 'cqu', 'AUR62005667' => 'cqu', 'AUR62007634' => 'cqu', 'AUR62008186' => 'cqu', 'AUR62008187' => 'cqu', 'AUR62008188' => 'cqu', 'AUR62027954' => 'cqu', 'AUR62028766' => 'cqu', 'AUR62028767' => 'cqu', 'AUR62028768' => 'cqu', 'AUR62028886' => 'cqu', 'AUR62029563' => 'cqu', 'AUR62038832' => 'cqu', 'BcaB01g04149' => 'bca', 'BcaB03g12940' => 'bca', 'BcaB03g13090' => 'bca', 'BcaB03g14466' => 'bca', 'BcaB05g24035' => 'bca', 'BcaC01g06050' => 'bca', 'BcaC04g19148' => 'bca', 'BcaC04g20761' => 'bca', 'BcaC06g32845' => 'bca', 'BcaC07g41274' => 'bca', 'BcaC09g50827' => 'bca', 'BcaNung00741' => 'bca', 'BcaNung00742' => 'bca', 'BcaNung01859' => 'bca', 'BcaNung03985' => 'bca', 'BcaNung03989' => 'bca', 'BcaNung05661' => 'bca', 'BolC1t00257H' => 'bol', 'BolC1t01956H' => 'bol', 'BolC2t06534H' => 'bol', 'BolC3t14334H' => 'bol', 'BolC5t30451H' => 'bol', 'BolC7t45880H' => 'bol', 'BolC7t46586H' => 'bol', 'BolC8t49301H' => 'bol', 'BolC8t51837H' => 'bol', 'BolC9t56822H' => 'bol', 'BolC9t59235H' => 'bol', 'BraA01t00234Z' => 'bra', 'BraA01t01563Z' => 'bra', 'BraA02t05147Z' => 'bra', 'BraA03t10947Z' => 'bra', 'BraA03t14633Z' => 'bra', 'BraA08t35112Z' => 'bra', 'BraA09t41330Z' => 'bra', 'BraA10t44570Z' => 'bra', 'C01p02670' => 'bna', 'C01p20260' => 'bna', 'C02p05890' => 'bna', 'C03p19530' => 'bna', 'C05p17470' => 'bna', 'C07p53900' => 'bna', 'C07p61630' => 'bna', 'C08p16800' => 'bna', 'C08p42810' => 'bna', 'C09p39480' => 'bna', 'C09p63980' => 'bna', 'CAN.G1001.7' => 'can', 'CAN.G1034.55' => 'can', 'CAN.G143.7' => 'can', 'CAN.G3340.1' => 'can', 'CAN.G358.19' => 'can', 'CAN.G373.2' => 'can', 'CAN.G674.16' => 'can', 'CAN.G674.17' => 'can', 'CAN.G674.18' => 'can', 'CAN.G732.2' => 'can', 'CAN.G732.3' => 'can', 'CAN.G993.39' => 'can', 'CANSAT01G2052' => 'cansat', 'CANSAT80G0070' => 'cansat', 'CANSAT80G0483' => 'cansat', 'CANSAT80G0625' => 'cansat', 'CARHR019690' => 'chi', 'CARHR080280' => 'chi', 'CARHR152750' => 'chi', 'CARHR152760' => 'chi', 'CARHR152770' => 'chi', 'CARHR200340' => 'chi', 'CARHR232370' => 'chi', 'CARHR244670' => 'chi', 'CARHR244680' => 'chi', 'CARHR257520' => 'chi', 'Carub.0001s1872' => 'cru', 'Carub.0006s1130' => 'cru', 'Carub.0007s0396' => 'cru', 'Carub.0007s0397' => 'cru', 'Carub.0007s1608' => 'cru', 'Carub.0008s1068' => 'cru', 'Carub.0008s1077' => 'cru', 'Ca_16158_v3' => 'car', 'Ca_17571_v3' => 'car', 'Ca_21936_v3' => 'car', 'Ca_22350_v3' => 'car', 'CBR_g22445' => 'cbr', 'CBR_g26290' => 'cbr', 'Cc04_g09610' => 'ccan', 'Cc04_g12280' => 'ccan', 'Cc07_g10230' => 'ccan', 'CDE02G0093' => 'cde', 'CDE02G0701' => 'cde', 'CDE04G1050' => 'cde', 'CDE05G1833' => 'cde', 'CDE05G3058' => 'cde', 'CDE05G3380' => 'cde', 'CDE06G0536' => 'cde', 'Cfa006923' => 'cfa', 'Cfa009402' => 'cfa', 'Cfa018751' => 'cfa', 'Cfa019164' => 'cfa', 'Cfa022935' => 'cfa', 'Ciclev10019081m.g' => 'ccl', 'Ciclev10025076m.g' => 'ccl', 'Ciclev10030712m.g' => 'ccl', 'Ciclev10033760m.g' => 'ccl', 'CiPaw.05G105600' => 'cil', 'CiPaw.08G136700' => 'cil', 'CiPaw.11G003900' => 'cil', 'CiPaw.11G023700' => 'cil', 'CiPaw.12G003700' => 'cil', 'ClCG06G017100' => 'cla', 'ClCG06G018110' => 'cla', 'ClCG07G008800' => 'cla', 'ClCG07G015330' => 'cla', 'COL.COLO4_13698' => 'col', 'COL.COLO4_16659' => 'col', 'COL.COLO4_21986' => 'col', 'COL.COLO4_24049' => 'col', 'COL.COLO4_29061' => 'col', 'COL.COLO4_29075' => 'col', 'COL.COLO4_30094' => 'col', 'Cpa.g.c33689' => 'cpa', 'Cpa.g.sc108.39' => 'cpa', 'Cpa.g.sc108.41' => 'cpa', 'Cpa.g.sc1163.1' => 'cpa', 'Cpa.g.sc4.155' => 'cpa', 'Cpa.g.sc6.194' => 'cpa', 'CsaV3_1G000340' => 'csa', 'CsaV3_1G001400' => 'csa', 'CsaV3_4G002220' => 'csa', 'CsaV3_4G005370' => 'csa', 'CSS0007487' => 'camsi', 'CSS0008066' => 'camsi', 'CSS0009120' => 'camsi', 'CSS0015512' => 'camsi', 'CSS0022409' => 'camsi', 'CSS0025358' => 'camsi', 'CSS0044547' => 'camsi', 'DCAR_013057' => 'dca', 'DCAR_015058' => 'dca', 'DCAR_016027' => 'dca', 'DCAR_017327' => 'dca', 'DCAR_020743' => 'dca', 'DCAR_026157' => 'dca', 'DCAR_032339' => 'dca', 'DCAR_032340' => 'dca', 'Dinv11200' => 'din', 'Dinv11201' => 'din', 'Dinv20631' => 'din', 'Dinv23182' => 'din', 'Dinv33466' => 'din', 'Dinv33583' => 'din', 'Dinv38565' => 'din', 'Duzib068G0200' => 'dzi', 'Duzib147G0132' => 'dzi', 'Duzib147G0635' => 'dzi', 'Duzib205G1670' => 'dzi', 'Duzib251G0606' => 'dzi', 'ECA232G3336' => 'eca', 'ECA232G3763' => 'eca', 'ECA232G4845' => 'eca', 'ECA234G1607' => 'eca', 'ECA246G0932' => 'eca', 'ECA247G0781' => 'eca', 'ECA247G1932' => 'eca', 'ECA247G2079' => 'eca', 'ECA247G3338' => 'eca', 'ECA247G4115' => 'eca', 'EL10Ac3g06552' => 'bvu', 'EL10Ac5g10721' => 'bvu', 'EL10Ac5g10722' => 'bvu', 'EL10Ac5g10723' => 'bvu', 'EL10Ac5g11361' => 'bvu', 'EL10Ac6g13553' => 'bvu', 'EL10As8g23872' => 'bvu', 'Eucgr.B00250' => 'egr', 'Eucgr.B00251' => 'egr', 'Eucgr.B03533' => 'egr', 'Eucgr.I02381' => 'egr', 'Eucgr.K02700' => 'egr', 'FAN02G0174' => 'fan', 'FAN02G3146' => 'fan', 'FAN04G1672' => 'fan', 'FAN04G2273' => 'fan', 'FAN05G2791' => 'fan', 'FAN05G4035' => 'fan', 'FAN07G0834' => 'fan', 'FAN08G1198' => 'fan', 'FAN09G4182' => 'fan', 'FAN12G0496' => 'fan', 'FAN13G1027' => 'fan', 'FAN13G2951' => 'fan', 'FAN14G0705' => 'fan', 'FAN14G0720' => 'fan', 'FAN17G0201' => 'fan', 'FAN17G2665' => 'fan', 'FAN18G1456' => 'fan', 'FAN18G1525' => 'fan', 'FAN18G3500' => 'fan', 'FAN28G2670' => 'fan', 'FvH4_1g12391' => 'fve', 'FvH4_4g23220' => 'fve', 'FvH4_5g08810' => 'fve', 'FvH4_5g28960' => 'fve', 'FvH4_6g42820' => 'fve', 'FvH4_6g51110' => 'fve', 'Glyma.02G051802' => 'gma', 'Glyma.04G185300' => 'gma', 'Glyma.05G202900' => 'gma', 'Glyma.08G010300' => 'gma', 'Glyma.16G131900' => 'gma', 'Glyma.17G087900' => 'gma', 'Gohir.A07G048600' => 'ghi', 'Gohir.A11G179000' => 'ghi', 'Gohir.A12G140900' => 'ghi', 'Gohir.A12G140950' => 'ghi', 'Gohir.A12G191700' => 'ghi', 'Gohir.A13G086300' => 'ghi', 'Gohir.D07G052900' => 'ghi', 'Gohir.D11G186600' => 'ghi', 'Gohir.D12G145575' => 'ghi', 'Gohir.D12G145650' => 'ghi', 'Gohir.D12G145725' => 'ghi', 'Gohir.D12G194050' => 'ghi', 'Gohir.D13G091800' => 'ghi', 'Gorai.001G055900' => 'gra', 'Gorai.007G198400' => 'gra', 'Gorai.008G157000' => 'gra', 'Gorai.008G157100' => 'gra', 'Gorai.008G208700' => 'gra', 'Gorai.010G138700' => 'gra', 'GSVIVG01000977001' => 'vvi', 'GSVIVG01007708001' => 'vvi', 'GSVIVG01008587001' => 'vvi', 'GSVIVG01018849001' => 'vvi', 'GSVIVG01032432001' => 'vvi', 'HanXRQChr02g0034131' => 'han', 'HanXRQChr02g0035981' => 'han', 'HanXRQChr02g0035991' => 'han', 'HanXRQChr05g0155611' => 'han', 'HanXRQChr05g0155621' => 'han', 'HanXRQChr08g0236501' => 'han', 'HanXRQChr09g0261321' => 'han', 'HanXRQChr09g0272081' => 'han', 'HanXRQChr10g0310741' => 'han', 'HanXRQChr11g0325591' => 'han', 'HanXRQChr12g0385691' => 'han', 'HanXRQChr13g0387801' => 'han', 'HanXRQChr15g0463011' => 'han', 'Haze_03826' => 'cav', 'Haze_03827' => 'cav', 'Haze_07183' => 'cav', 'Haze_07537' => 'cav', 'Haze_07539' => 'cav', 'Haze_12461' => 'cav', 'Haze_16115' => 'cav', 'Haze_16808' => 'cav', 'Haze_18531' => 'cav', 'Hma1.2p1_0046F.1_g026700' => 'hma', 'Hma1.2p1_0046F.1_g026710' => 'hma', 'Hma1.2p1_0168F.1_g074340' => 'hma', 'Hma1.2p1_0266F.1_g107030' => 'hma', 'Hma1.2p1_0266F.1_g107060' => 'hma', 'Hma1.2p1_0275F.1_g110510' => 'hma', 'Hma1.2p1_0592F.1_g185490' => 'hma', 'Hma1.2p1_0592F.1_g185500' => 'hma', 'Hma1.2p1_0592F.1_g185510' => 'hma', 'Hma1.2p1_0592F.1_g185520' => 'hma', 'Hma1.2p1_0592F.1_g185530' => 'hma', 'Hma1.2p1_0818F.1_g223450' => 'hma', 'HPP92_009708' => 'vpl', 'HPP92_009793' => 'vpl', 'HPP92_009796' => 'vpl', 'HPP92_009797' => 'vpl', 'HPP92_014940' => 'vpl', 'HPP92_014988' => 'vpl', 'Hund02463' => 'sun', 'Hund02760' => 'sun', 'Hund05071' => 'sun', 'Hund10108' => 'sun', 'Hund11204' => 'sun', 'Hund14016' => 'sun', 'Hund16464' => 'sun', 'Lalb_Chr09g0333391' => 'lal', 'Lalb_Chr11g0070461' => 'lal', 'Lalb_Chr12g0201671' => 'lal', 'Lalb_Chr13g0297161' => 'lal', 'Lj1g0002823' => 'lja', 'Lj3C1074T6' => 'lonja', 'Lj4A212T28' => 'lonja', 'Lj4g0005516' => 'lja', 'Lj4g0013705' => 'lja', 'Lj4g0027865' => 'lja', 'Lj5C92G16' => 'lonja', 'Lj5C92T12' => 'lonja', 'Lj7C596T3' => 'lonja', 'Lj9A446G59' => 'lonja', 'Lj9A482G21' => 'lonja', 'Lsat_1_v5_gn_1_28261' => 'lsa', 'Lsat_1_v5_gn_1_28281' => 'lsa', 'Lsat_1_v5_gn_1_32721' => 'lsa', 'Lsat_1_v5_gn_4_151760' => 'lsa', 'Lsat_1_v5_gn_4_2120' => 'lsa', 'Lsat_1_v5_gn_4_75761' => 'lsa', 'Lsat_1_v5_gn_5_10920' => 'lsa', 'Manes.02G099900' => 'mes', 'Manes.11G096200' => 'mes', 'Manes.12G007200' => 'mes', 'Manes.14G048300' => 'mes', 'Manes.17G114700' => 'mes', 'Mapoly0002s0070' => 'mpo', 'Mapoly0029s0099' => 'mpo', 'MBI07_g24742_MAGBIO' => 'mbi', 'MBI10_g27988_MAGBIO' => 'mbi', 'MBI11_g13057_MAGBIO' => 'mbi', 'MD02G1137200' => 'mdo', 'MD06G1137200' => 'mdo', 'MD07G1122300' => 'mdo', 'MD09G1078200' => 'mdo', 'MD13G1123700' => 'mdo', 'MD14G1151900' => 'mdo', 'MD17G1030900' => 'mdo', 'MD17G1068200' => 'mdo', 'MD17G1068600' => 'mdo', 'Medtr3g077540' => 'mtr', 'Medtr4g105530' => 'mtr', 'Medtr8g076580' => 'mtr', 'Medtr8g076590' => 'mtr', 'Medtr8g096410' => 'mtr', 'MELO3C016411.2' => 'cme', 'MELO3C017780.2' => 'cme', 'MELO3C022560.2' => 'cme', 'MELO3C026187.2' => 'cme', 'MELO3C026286.2' => 'cme', 'MELO3C032854.2' => 'cme', 'Migut.H02495' => 'egut', 'Migut.I00561' => 'egut', 'Migut.K01015' => 'egut', 'Migut.K01016' => 'egut', 'Migut.L00743' => 'egut', 'Migut.L00744' => 'egut', 'Migut.L00746' => 'egut', 'Migut.L00798' => 'egut', 'Migut.L00799' => 'egut', 'Migut.N02096' => 'egut', 'MSTRG.11259' => 'ama', 'MSTRG.23142' => 'ama', 'MSTRG.2499' => 'ama', 'Nitab4.5_0000003g0730' => 'nta', 'Nitab4.5_0000137g0020' => 'nta', 'Nitab4.5_0000721g0210' => 'nta', 'Nitab4.5_0000723g0050' => 'nta', 'Nitab4.5_0000913g0070' => 'nta', 'Nitab4.5_0001332g0040' => 'nta', 'Nitab4.5_0001771g0050' => 'nta', 'Nitab4.5_0001918g0050' => 'nta', 'Nitab4.5_0002686g0030' => 'nta', 'Nitab4.5_0003156g0020' => 'nta', 'Nitab4.5_0003383g0040' => 'nta', 'Nitab4.5_0003918g0010' => 'nta', 'Nitab4.5_0006760g0010' => 'nta', 'Nn1g05981' => 'nnu', 'Nn1g06288' => 'nnu', 'Nn3g16371' => 'nnu', 'Nn3g16786' => 'nnu', 'Nn4g22232' => 'nnu', 'Oeu005144.1' => 'oeu', 'Oeu005145.1' => 'oeu', 'Oeu011348.1' => 'oeu', 'Oeu016415.1' => 'oeu', 'Oeu023501.1' => 'oeu', 'Oeu044473.1' => 'oeu', 'Oeu048892.2' => 'oeu', 'Os01g0549200' => 'osa', 'Os02g0469300' => 'osa', 'Os04g0311100' => 'osa', 'Os06g0474900' => 'osa', 'Os10g0181700' => 'osa', 'Os11g0454800' => 'osa', 'Peaxi162Scf00037g00714' => 'pax', 'Peaxi162Scf00084g01217' => 'pax', 'Peaxi162Scf00257g00217' => 'pax', 'Peaxi162Scf00516g00215' => 'pax', 'Peaxi162Scf00689g00123' => 'pax', 'PGR044G2719' => 'pgr', 'PGR083G1360' => 'pgr', 'PGR102G2849' => 'pgr', 'PGR119G2534' => 'pgr', 'PGSC0003DMG400003538' => 'stu', 'PGSC0003DMG400028138' => 'stu', 'PGSC0003DMG400031732' => 'stu', 'PGSC0003DMG400038165' => 'stu', 'Phvul.002G284600' => 'pvu', 'Phvul.003G258200' => 'pvu', 'Phvul.009G176500' => 'pvu', 'Potri.003G167201' => 'ptr', 'Potri.005G118400' => 'ptr', 'Potri.012G089000' => 'ptr', 'Potri.012G102800' => 'ptr', 'Potri.015G079400' => 'ptr', 'Potri.015G100900' => 'ptr', 'Pp3c14_9810' => 'ppa', 'Pp3c15_10450' => 'ppa', 'Pp3c20_19150' => 'ppa', 'Pp3c23_12740' => 'ppa', 'Pp3c23_6310' => 'ppa', 'Pp3c24_3720' => 'ppa', 'Pp3c27_2580' => 'ppa', 'Pp3c9_8990' => 'ppa', 'PRCOL_00002854' => 'pco', 'Prupe.1G221200' => 'ppe', 'Prupe.3G289000' => 'ppe', 'Prupe.5G147000' => 'ppe', 'Prupe.6G157300' => 'ppe', 'Prupe.7G163400' => 'ppe', 'Psat0s2177g0040' => 'psa', 'Psat3g174760' => 'psa', 'Psat3g192160' => 'psa', 'Psat4g058520' => 'psa', 'Psat4g096840' => 'psa', 'Psat7g037320' => 'psa', 'PSO017G1274' => 'pso', 'PSO017G5166' => 'pso', 'PSO063G4558' => 'pso', 'PSO170G4458' => 'pso', 'PSO170G5005' => 'pso', 'PSO210G6156' => 'pso', 'PSO210G6635' => 'pso', 'PSO210G7397' => 'pso', 'PSO210G7700' => 'pso', 'PSO455G0035' => 'pso', 'PSO455G0180' => 'pso', 'PSO478G4515' => 'pso', 'PSO832G1305' => 'pso', 'PSO832G3489' => 'pso', 'QL02p075247' => 'qlo', 'QL03p051148' => 'qlo', 'QL05p010313' => 'qlo', 'QL06p034627' => 'qlo', 'QL10p001889' => 'qlo', 'QL10p010846' => 'qlo', 'RcHm_v2.0_Chr1g0350621' => 'rch', 'RcHm_v2.0_Chr1g0350641' => 'rch', 'RcHm_v2.0_Chr2g0092891' => 'rch', 'RcHm_v2.0_Chr2g0100251' => 'rch', 'RcHm_v2.0_Chr2g0158661' => 'rch', 'RcHm_v2.0_Chr2g0172741' => 'rch', 'RcHm_v2.0_Chr4g0429571' => 'rch', 'RcHm_v2.0_Chr5g0042471' => 'rch', 'RcHm_v2.0_Chr7g0189451' => 'rch', 'Rhsim08G0052000' => 'rsi', 'Rhsim08G0174400' => 'rsi', 'Rhsim08G0193200' => 'rsi', 'Rhsim10G0214800' => 'rsi', 'Rhsim10G0214900' => 'rsi', 'Rhsim10G0215000' => 'rsi', 'Rhsim12G0022900' => 'rsi', 'Rhsim12G0177500' => 'rsi', 'Rhsim12G0177700' => 'rsi', 'Sabra03G0122600' => 'sbr', 'Sabra05G0097400' => 'sbr', 'Sabra12G0064100' => 'sbr', 'Sabra15G0121300' => 'sbr', 'SalBow2G0642' => 'sbo', 'SalBow5G2667' => 'sbo', 'SalBow5G4873' => 'sbo', 'SalBow8G2395' => 'sbo', 'Sc03g0003290' => 'sci', 'Sc10g0010130' => 'sci', 'Sc22g0003650' => 'sci', 'Sed0001603' => 'sed', 'Sed0004259' => 'sed', 'Sed0006789' => 'sed', 'Sed0011838' => 'sed', 'Sed0012964' => 'sed', 'Sed0016383' => 'sed', 'Sed0019010' => 'sed', 'Sed0020188' => 'sed', 'SEGI_04702' => 'sgi', 'SEGI_17231' => 'sgi', 'SEGI_18877' => 'sgi', 'SEGI_25196' => 'sgi', 'SEGI_25515' => 'sgi', 'SEGI_28445' => 'sgi', 'SEGI_37452' => 'sgi', 'SGA_v2.0_scaffold188G40336' => 'sas', 'SGA_v2.0_scaffold228G43247' => 'sas', 'SGA_v2.0_scaffold280G46853' => 'sas', 'SGA_v2.0_scaffold34G13808' => 'sas', 'SGA_v2.0_scaffold40G15576' => 'sas', 'SGA_v2.0_scaffold611G53188' => 'sas', 'SGA_v2.0_scaffold78G25461' => 'sas', 'SGA_v2.0_scaffold90G27888' => 'sas', 'SHI08601' => 'shi', 'SHI08606' => 'shi', 'SHI17117' => 'shi', 'SHI17119' => 'shi', 'SMO118G0201' => 'smo', 'SMO169G0247' => 'smo', 'SMO176G0006' => 'smo', 'SMO176G0015' => 'smo', 'SMO202G0006' => 'smo', 'SMO240G0050' => 'smo', 'SMO286G0009' => 'smo', 'SMO338G0033' => 'smo', 'SMO356G0533' => 'smo', 'SMO364G0382' => 'smo', 'SMO367G0166' => 'smo', 'SMO367G1098' => 'smo', 'Solyc01g009920.3' => 'sly', 'Solyc01g099300.3' => 'sly', 'Solyc02g084700.3' => 'sly', 'Solyc03g097520.3' => 'sly', 'Solyc06g071580.3' => 'sly', 'Solyc10g081760.3' => 'sly', 'Sopen01g005480' => 'spe', 'Sopen01g042850' => 'spe', 'Sopen02g029370' => 'spe', 'Sopen03g028280' => 'spe', 'Sopen06g027870' => 'spe', 'Sopen10g032270' => 'spe', 'Sp5g18180' => 'spa', 'Sp6g12880' => 'spa', 'Sp6g30850' => 'spa', 'Sp7g22960' => 'spa', 'Sp7g34010' => 'spa', 'SpUn1326_0010' => 'spa', 'TAR371G0242' => 'tar', 'TAR622G0638' => 'tar', 'TAR628G1548' => 'tar', 'TAR629G1079' => 'tar', 'TAR629G3413' => 'tar', 'THA.LOC104804249' => 'tha', 'THA.LOC104808315' => 'tha', 'THA.LOC104809238' => 'tha', 'THA.LOC104825484' => 'tha', 'Thecc.01G025500' => 'tca', 'Thecc.03G015800' => 'tca', 'Thecc.03G018000' => 'tca', 'Thecc.03G134800' => 'tca', 'Thecc.04G014700' => 'tca', 'Thhalv10006991m.g' => 'esa', 'Thhalv10012707m.g' => 'esa', 'Thhalv10015739m.g' => 'esa', 'Thhalv10024553m.g' => 'esa', 'Thhalv10024673m.g' => 'esa', 'Thhalv10029187m.g' => 'esa', 'TPR.G12971' => 'tpr', 'TPR.G29396' => 'tpr', 'TPR.G33376' => 'tpr', 'TPR.G35508' => 'tpr', 'TPR.G35516' => 'tpr', 'TPR.G37317' => 'tpr', 'TPR.G37389' => 'tpr', 'TPR.G37523' => 'tpr', 'TPR.G559' => 'tpr', 'TWI14G0070' => 'twi', 'TWI14G0729' => 'twi', 'TWI18G0596' => 'twi', 'TWI39G0780' => 'twi', 'TWI39G0850' => 'twi', 'TWI73G1052' => 'twi', 'unitig_52.g17485' => 'ugi', 'unitig_61.g26355' => 'ugi', 'vmacro01040' => 'vma', 'vmacro16731' => 'vma', 'vmacro18270' => 'vma', 'vmacro19142' => 'vma', 'vmacro19407' => 'vma', 'vmacro19408' => 'vma', 'vmacro21899' => 'vma', 'vmacro21900' => 'vma', 'vmacro21901' => 'vma', 'VMungo0251G0490' => 'vmu', 'VMungo0251G1748' => 'vmu', 'VMungo1309G0421' => 'vmu', 'Zm00001eb086500' => 'zma', 'Zm00001eb150680' => 'zma', 'Zm00001eb162330' => 'zma', 'Zm00001eb203130' => 'zma', 'Zm00001eb369480' => 'zma', 'Zm00001eb382340' => 'zma', 'Zm00001eb416360' => 'zma' ), 'gf_id' => 'HOM05D000902', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000902' ), 'data_identifier' => 'HOM05D000902', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000902', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '663', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02470' => 'bna', 'A01p16260' => 'bna', 'A02p01680' => 'bna', 'A03p16600' => 'bna', 'A03p55660' => 'bna', 'A03p64160' => 'bna', 'A03p64170' => 'bna', 'A08p31900' => 'bna', 'A09p59530' => 'bna', 'A10p08230' => 'bna', 'A10p25090' => 'bna', 'Aa31LG3G7100' => 'aar', 'Aa31LG3G7110' => 'aar', 'Aa31LG6G13160' => 'aar', 'Aa31LG7G10770' => 'aar', 'Aa31LG7G3830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2723' => 'aag', 'Actinidia08045' => 'ach', 'Actinidia08888' => 'ach', 'Actinidia18333' => 'ach', 'Actinidia19334' => 'ach', 'Actinidia25552' => 'ach', 'Actinidia26089' => 'ach', 'Actinidia30615' => 'ach', 'Actinidia30616' => 'ach', 'Actinidia33083' => 'ach', 'Actinidia35762' => 'ach', 'Ah.02g110620' => 'amhyb', 'Ah.11g046390' => 'amhyb', 'AL1G31670' => 'aly', 'AL6G23730' => 'aly', 'AL7G14740' => 'aly', 'AL7G14750' => 'aly', 'AL7G14760' => 'aly', 'AL7G28220' => 'aly', 'AL8G24940' => 'aly', 'Aqoxy3G01665' => 'aox', 'Aqoxy3G02853' => 'aox', 'Aqoxy5G01513' => 'aox', 'Aqoxy5G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8SKA4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ75LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKDA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0LJZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7REX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZP4YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWX7I5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2QKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS0L9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPCD8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q161UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC7XCF' => 'arhy', 'AT1G19100' => 'ath', 'AT4G24970' => 'ath', 'AT4G36270' => 'ath', 'AT4G36280' => 'ath', 'AT4G36290' => 'ath', 'AT5G13130' => 'ath', 'AT5G50780' => 'ath', 'ATR0582G266' => 'atr', 'ATR0661G195' => 'atr', 'ATR1152G031' => 'atr', 'Atru.chr11.2382' => 'acertr', 'Atru.chr12.2337' => 'acertr', 'Atru.chr3.744' => 'acertr', 'Atru.chr6.1870' => 'acertr', 'Atru.chr9.2515' => 'acertr', 'AUR62004120' => 'cqu', 'AUR62005667' => 'cqu', 'AUR62007634' => 'cqu', 'AUR62008186' => 'cqu', 'AUR62008187' => 'cqu', 'AUR62008188' => 'cqu', 'AUR62027954' => 'cqu', 'AUR62028766' => 'cqu', 'AUR62028767' => 'cqu', 'AUR62028768' => 'cqu', 'AUR62028886' => 'cqu', 'AUR62029563' => 'cqu', 'AUR62038832' => 'cqu', 'BcaB01g04149' => 'bca', 'BcaB03g12940' => 'bca', 'BcaB03g13090' => 'bca', 'BcaB03g14466' => 'bca', 'BcaB05g24035' => 'bca', 'BcaC01g06050' => 'bca', 'BcaC04g19148' => 'bca', 'BcaC04g20761' => 'bca', 'BcaC06g32845' => 'bca', 'BcaC07g41274' => 'bca', 'BcaC09g50827' => 'bca', 'BcaNung00741' => 'bca', 'BcaNung00742' => 'bca', 'BcaNung01859' => 'bca', 'BcaNung03985' => 'bca', 'BcaNung03989' => 'bca', 'BcaNung05661' => 'bca', 'BolC1t00257H' => 'bol', 'BolC1t01956H' => 'bol', 'BolC2t06534H' => 'bol', 'BolC3t14334H' => 'bol', 'BolC5t30451H' => 'bol', 'BolC7t45880H' => 'bol', 'BolC7t46586H' => 'bol', 'BolC8t49301H' => 'bol', 'BolC8t51837H' => 'bol', 'BolC9t56822H' => 'bol', 'BolC9t59235H' => 'bol', 'BraA01t00234Z' => 'bra', 'BraA01t01563Z' => 'bra', 'BraA02t05147Z' => 'bra', 'BraA03t10947Z' => 'bra', 'BraA03t14633Z' => 'bra', 'BraA08t35112Z' => 'bra', 'BraA09t41330Z' => 'bra', 'BraA10t44570Z' => 'bra', 'C01p02670' => 'bna', 'C01p20260' => 'bna', 'C02p05890' => 'bna', 'C03p19530' => 'bna', 'C05p17470' => 'bna', 'C07p53900' => 'bna', 'C07p61630' => 'bna', 'C08p16800' => 'bna', 'C08p42810' => 'bna', 'C09p39480' => 'bna', 'C09p63980' => 'bna', 'CAN.G1001.7' => 'can', 'CAN.G1034.55' => 'can', 'CAN.G143.7' => 'can', 'CAN.G3340.1' => 'can', 'CAN.G358.19' => 'can', 'CAN.G373.2' => 'can', 'CAN.G674.16' => 'can', 'CAN.G674.17' => 'can', 'CAN.G674.18' => 'can', 'CAN.G732.2' => 'can', 'CAN.G732.3' => 'can', 'CAN.G993.39' => 'can', 'CANSAT01G2052' => 'cansat', 'CANSAT80G0070' => 'cansat', 'CANSAT80G0483' => 'cansat', 'CANSAT80G0625' => 'cansat', 'CARHR019690' => 'chi', 'CARHR080280' => 'chi', 'CARHR152750' => 'chi', 'CARHR152760' => 'chi', 'CARHR152770' => 'chi', 'CARHR200340' => 'chi', 'CARHR232370' => 'chi', 'CARHR244670' => 'chi', 'CARHR244680' => 'chi', 'CARHR257520' => 'chi', 'Carub.0001s1872' => 'cru', 'Carub.0006s1130' => 'cru', 'Carub.0007s0396' => 'cru', 'Carub.0007s0397' => 'cru', 'Carub.0007s1608' => 'cru', 'Carub.0008s1068' => 'cru', 'Carub.0008s1077' => 'cru', 'Ca_16158_v3' => 'car', 'Ca_17571_v3' => 'car', 'Ca_21936_v3' => 'car', 'Ca_22350_v3' => 'car', 'CBR_g22445' => 'cbr', 'CBR_g26290' => 'cbr', 'Cc04_g09610' => 'ccan', 'Cc04_g12280' => 'ccan', 'Cc07_g10230' => 'ccan', 'CDE02G0093' => 'cde', 'CDE02G0701' => 'cde', 'CDE04G1050' => 'cde', 'CDE05G1833' => 'cde', 'CDE05G3058' => 'cde', 'CDE05G3380' => 'cde', 'CDE06G0536' => 'cde', 'Cfa006923' => 'cfa', 'Cfa009402' => 'cfa', 'Cfa018751' => 'cfa', 'Cfa019164' => 'cfa', 'Cfa022935' => 'cfa', 'Ciclev10019081m.g' => 'ccl', 'Ciclev10025076m.g' => 'ccl', 'Ciclev10030712m.g' => 'ccl', 'Ciclev10033760m.g' => 'ccl', 'CiPaw.05G105600' => 'cil', 'CiPaw.08G136700' => 'cil', 'CiPaw.11G003900' => 'cil', 'CiPaw.11G023700' => 'cil', 'CiPaw.12G003700' => 'cil', 'ClCG06G017100' => 'cla', 'ClCG06G018110' => 'cla', 'ClCG07G008800' => 'cla', 'ClCG07G015330' => 'cla', 'COL.COLO4_13698' => 'col', 'COL.COLO4_16659' => 'col', 'COL.COLO4_21986' => 'col', 'COL.COLO4_24049' => 'col', 'COL.COLO4_29061' => 'col', 'COL.COLO4_29075' => 'col', 'COL.COLO4_30094' => 'col', 'Cpa.g.c33689' => 'cpa', 'Cpa.g.sc108.39' => 'cpa', 'Cpa.g.sc108.41' => 'cpa', 'Cpa.g.sc1163.1' => 'cpa', 'Cpa.g.sc4.155' => 'cpa', 'Cpa.g.sc6.194' => 'cpa', 'CsaV3_1G000340' => 'csa', 'CsaV3_1G001400' => 'csa', 'CsaV3_4G002220' => 'csa', 'CsaV3_4G005370' => 'csa', 'CSS0007487' => 'camsi', 'CSS0008066' => 'camsi', 'CSS0009120' => 'camsi', 'CSS0015512' => 'camsi', 'CSS0022409' => 'camsi', 'CSS0025358' => 'camsi', 'CSS0044547' => 'camsi', 'DCAR_013057' => 'dca', 'DCAR_015058' => 'dca', 'DCAR_016027' => 'dca', 'DCAR_017327' => 'dca', 'DCAR_020743' => 'dca', 'DCAR_026157' => 'dca', 'DCAR_032339' => 'dca', 'DCAR_032340' => 'dca', 'Dinv11200' => 'din', 'Dinv11201' => 'din', 'Dinv20631' => 'din', 'Dinv23182' => 'din', 'Dinv33466' => 'din', 'Dinv33583' => 'din', 'Dinv38565' => 'din', 'Duzib068G0200' => 'dzi', 'Duzib147G0132' => 'dzi', 'Duzib147G0635' => 'dzi', 'Duzib205G1670' => 'dzi', 'Duzib251G0606' => 'dzi', 'ECA232G3336' => 'eca', 'ECA232G3763' => 'eca', 'ECA232G4845' => 'eca', 'ECA234G1607' => 'eca', 'ECA246G0932' => 'eca', 'ECA247G0781' => 'eca', 'ECA247G1932' => 'eca', 'ECA247G2079' => 'eca', 'ECA247G3338' => 'eca', 'ECA247G4115' => 'eca', 'EL10Ac3g06552' => 'bvu', 'EL10Ac5g10721' => 'bvu', 'EL10Ac5g10722' => 'bvu', 'EL10Ac5g10723' => 'bvu', 'EL10Ac5g11361' => 'bvu', 'EL10Ac6g13553' => 'bvu', 'EL10As8g23872' => 'bvu', 'Eucgr.B00250' => 'egr', 'Eucgr.B00251' => 'egr', 'Eucgr.B03533' => 'egr', 'Eucgr.I02381' => 'egr', 'Eucgr.K02700' => 'egr', 'FAN02G0174' => 'fan', 'FAN02G3146' => 'fan', 'FAN04G1672' => 'fan', 'FAN04G2273' => 'fan', 'FAN05G2791' => 'fan', 'FAN05G4035' => 'fan', 'FAN07G0834' => 'fan', 'FAN08G1198' => 'fan', 'FAN09G4182' => 'fan', 'FAN12G0496' => 'fan', 'FAN13G1027' => 'fan', 'FAN13G2951' => 'fan', 'FAN14G0705' => 'fan', 'FAN14G0720' => 'fan', 'FAN17G0201' => 'fan', 'FAN17G2665' => 'fan', 'FAN18G1456' => 'fan', 'FAN18G1525' => 'fan', 'FAN18G3500' => 'fan', 'FAN28G2670' => 'fan', 'FvH4_1g12391' => 'fve', 'FvH4_4g23220' => 'fve', 'FvH4_5g08810' => 'fve', 'FvH4_5g28960' => 'fve', 'FvH4_6g42820' => 'fve', 'FvH4_6g51110' => 'fve', 'Glyma.02G051802' => 'gma', 'Glyma.04G185300' => 'gma', 'Glyma.05G202900' => 'gma', 'Glyma.08G010300' => 'gma', 'Glyma.16G131900' => 'gma', 'Glyma.17G087900' => 'gma', 'Gohir.A07G048600' => 'ghi', 'Gohir.A11G179000' => 'ghi', 'Gohir.A12G140900' => 'ghi', 'Gohir.A12G140950' => 'ghi', 'Gohir.A12G191700' => 'ghi', 'Gohir.A13G086300' => 'ghi', 'Gohir.D07G052900' => 'ghi', 'Gohir.D11G186600' => 'ghi', 'Gohir.D12G145575' => 'ghi', 'Gohir.D12G145650' => 'ghi', 'Gohir.D12G145725' => 'ghi', 'Gohir.D12G194050' => 'ghi', 'Gohir.D13G091800' => 'ghi', 'Gorai.001G055900' => 'gra', 'Gorai.007G198400' => 'gra', 'Gorai.008G157000' => 'gra', 'Gorai.008G157100' => 'gra', 'Gorai.008G208700' => 'gra', 'Gorai.010G138700' => 'gra', 'GSVIVG01000977001' => 'vvi', 'GSVIVG01007708001' => 'vvi', 'GSVIVG01008587001' => 'vvi', 'GSVIVG01018849001' => 'vvi', 'GSVIVG01032432001' => 'vvi', 'HanXRQChr02g0034131' => 'han', 'HanXRQChr02g0035981' => 'han', 'HanXRQChr02g0035991' => 'han', 'HanXRQChr05g0155611' => 'han', 'HanXRQChr05g0155621' => 'han', 'HanXRQChr08g0236501' => 'han', 'HanXRQChr09g0261321' => 'han', 'HanXRQChr09g0272081' => 'han', 'HanXRQChr10g0310741' => 'han', 'HanXRQChr11g0325591' => 'han', 'HanXRQChr12g0385691' => 'han', 'HanXRQChr13g0387801' => 'han', 'HanXRQChr15g0463011' => 'han', 'Haze_03826' => 'cav', 'Haze_03827' => 'cav', 'Haze_07183' => 'cav', 'Haze_07537' => 'cav', 'Haze_07539' => 'cav', 'Haze_12461' => 'cav', 'Haze_16115' => 'cav', 'Haze_16808' => 'cav', 'Haze_18531' => 'cav', 'Hma1.2p1_0046F.1_g026700' => 'hma', 'Hma1.2p1_0046F.1_g026710' => 'hma', 'Hma1.2p1_0168F.1_g074340' => 'hma', 'Hma1.2p1_0266F.1_g107030' => 'hma', 'Hma1.2p1_0266F.1_g107060' => 'hma', 'Hma1.2p1_0275F.1_g110510' => 'hma', 'Hma1.2p1_0592F.1_g185490' => 'hma', 'Hma1.2p1_0592F.1_g185500' => 'hma', 'Hma1.2p1_0592F.1_g185510' => 'hma', 'Hma1.2p1_0592F.1_g185520' => 'hma', 'Hma1.2p1_0592F.1_g185530' => 'hma', 'Hma1.2p1_0818F.1_g223450' => 'hma', 'HPP92_009708' => 'vpl', 'HPP92_009793' => 'vpl', 'HPP92_009796' => 'vpl', 'HPP92_009797' => 'vpl', 'HPP92_014940' => 'vpl', 'HPP92_014988' => 'vpl', 'Hund02463' => 'sun', 'Hund02760' => 'sun', 'Hund05071' => 'sun', 'Hund10108' => 'sun', 'Hund11204' => 'sun', 'Hund14016' => 'sun', 'Hund16464' => 'sun', 'Lalb_Chr09g0333391' => 'lal', 'Lalb_Chr11g0070461' => 'lal', 'Lalb_Chr12g0201671' => 'lal', 'Lalb_Chr13g0297161' => 'lal', 'Lj1g0002823' => 'lja', 'Lj3C1074T6' => 'lonja', 'Lj4A212T28' => 'lonja', 'Lj4g0005516' => 'lja', 'Lj4g0013705' => 'lja', 'Lj4g0027865' => 'lja', 'Lj5C92G16' => 'lonja', 'Lj5C92T12' => 'lonja', 'Lj7C596T3' => 'lonja', 'Lj9A446G59' => 'lonja', 'Lj9A482G21' => 'lonja', 'Lsat_1_v5_gn_1_28261' => 'lsa', 'Lsat_1_v5_gn_1_28281' => 'lsa', 'Lsat_1_v5_gn_1_32721' => 'lsa', 'Lsat_1_v5_gn_4_151760' => 'lsa', 'Lsat_1_v5_gn_4_2120' => 'lsa', 'Lsat_1_v5_gn_4_75761' => 'lsa', 'Lsat_1_v5_gn_5_10920' => 'lsa', 'Manes.02G099900' => 'mes', 'Manes.11G096200' => 'mes', 'Manes.12G007200' => 'mes', 'Manes.14G048300' => 'mes', 'Manes.17G114700' => 'mes', 'Mapoly0002s0070' => 'mpo', 'Mapoly0029s0099' => 'mpo', 'MBI07_g24742_MAGBIO' => 'mbi', 'MBI10_g27988_MAGBIO' => 'mbi', 'MBI11_g13057_MAGBIO' => 'mbi', 'MD02G1137200' => 'mdo', 'MD06G1137200' => 'mdo', 'MD07G1122300' => 'mdo', 'MD09G1078200' => 'mdo', 'MD13G1123700' => 'mdo', 'MD14G1151900' => 'mdo', 'MD17G1030900' => 'mdo', 'MD17G1068200' => 'mdo', 'MD17G1068600' => 'mdo', 'Medtr3g077540' => 'mtr', 'Medtr4g105530' => 'mtr', 'Medtr8g076580' => 'mtr', 'Medtr8g076590' => 'mtr', 'Medtr8g096410' => 'mtr', 'MELO3C016411.2' => 'cme', 'MELO3C017780.2' => 'cme', 'MELO3C022560.2' => 'cme', 'MELO3C026187.2' => 'cme', 'MELO3C026286.2' => 'cme', 'MELO3C032854.2' => 'cme', 'Migut.H02495' => 'egut', 'Migut.I00561' => 'egut', 'Migut.K01015' => 'egut', 'Migut.K01016' => 'egut', 'Migut.L00743' => 'egut', 'Migut.L00744' => 'egut', 'Migut.L00746' => 'egut', 'Migut.L00798' => 'egut', 'Migut.L00799' => 'egut', 'Migut.N02096' => 'egut', 'MSTRG.11259' => 'ama', 'MSTRG.23142' => 'ama', 'MSTRG.2499' => 'ama', 'Nitab4.5_0000003g0730' => 'nta', 'Nitab4.5_0000137g0020' => 'nta', 'Nitab4.5_0000721g0210' => 'nta', 'Nitab4.5_0000723g0050' => 'nta', 'Nitab4.5_0000913g0070' => 'nta', 'Nitab4.5_0001332g0040' => 'nta', 'Nitab4.5_0001771g0050' => 'nta', 'Nitab4.5_0001918g0050' => 'nta', 'Nitab4.5_0002686g0030' => 'nta', 'Nitab4.5_0003156g0020' => 'nta', 'Nitab4.5_0003383g0040' => 'nta', 'Nitab4.5_0003918g0010' => 'nta', 'Nitab4.5_0006760g0010' => 'nta', 'Nn1g05981' => 'nnu', 'Nn1g06288' => 'nnu', 'Nn3g16371' => 'nnu', 'Nn3g16786' => 'nnu', 'Nn4g22232' => 'nnu', 'Oeu005144.1' => 'oeu', 'Oeu005145.1' => 'oeu', 'Oeu011348.1' => 'oeu', 'Oeu016415.1' => 'oeu', 'Oeu023501.1' => 'oeu', 'Oeu044473.1' => 'oeu', 'Oeu048892.2' => 'oeu', 'Os01g0549200' => 'osa', 'Os02g0469300' => 'osa', 'Os04g0311100' => 'osa', 'Os06g0474900' => 'osa', 'Os10g0181700' => 'osa', 'Os11g0454800' => 'osa', 'Peaxi162Scf00037g00714' => 'pax', 'Peaxi162Scf00084g01217' => 'pax', 'Peaxi162Scf00257g00217' => 'pax', 'Peaxi162Scf00516g00215' => 'pax', 'Peaxi162Scf00689g00123' => 'pax', 'PGR044G2719' => 'pgr', 'PGR083G1360' => 'pgr', 'PGR102G2849' => 'pgr', 'PGR119G2534' => 'pgr', 'PGSC0003DMG400003538' => 'stu', 'PGSC0003DMG400028138' => 'stu', 'PGSC0003DMG400031732' => 'stu', 'PGSC0003DMG400038165' => 'stu', 'Phvul.002G284600' => 'pvu', 'Phvul.003G258200' => 'pvu', 'Phvul.009G176500' => 'pvu', 'Potri.003G167201' => 'ptr', 'Potri.005G118400' => 'ptr', 'Potri.012G089000' => 'ptr', 'Potri.012G102800' => 'ptr', 'Potri.015G079400' => 'ptr', 'Potri.015G100900' => 'ptr', 'Pp3c14_9810' => 'ppa', 'Pp3c15_10450' => 'ppa', 'Pp3c20_19150' => 'ppa', 'Pp3c23_12740' => 'ppa', 'Pp3c23_6310' => 'ppa', 'Pp3c24_3720' => 'ppa', 'Pp3c27_2580' => 'ppa', 'Pp3c9_8990' => 'ppa', 'PRCOL_00002854' => 'pco', 'Prupe.1G221200' => 'ppe', 'Prupe.3G289000' => 'ppe', 'Prupe.5G147000' => 'ppe', 'Prupe.6G157300' => 'ppe', 'Prupe.7G163400' => 'ppe', 'Psat0s2177g0040' => 'psa', 'Psat3g174760' => 'psa', 'Psat3g192160' => 'psa', 'Psat4g058520' => 'psa', 'Psat4g096840' => 'psa', 'Psat7g037320' => 'psa', 'PSO017G1274' => 'pso', 'PSO017G5166' => 'pso', 'PSO063G4558' => 'pso', 'PSO170G4458' => 'pso', 'PSO170G5005' => 'pso', 'PSO210G6156' => 'pso', 'PSO210G6635' => 'pso', 'PSO210G7397' => 'pso', 'PSO210G7700' => 'pso', 'PSO455G0035' => 'pso', 'PSO455G0180' => 'pso', 'PSO478G4515' => 'pso', 'PSO832G1305' => 'pso', 'PSO832G3489' => 'pso', 'QL02p075247' => 'qlo', 'QL03p051148' => 'qlo', 'QL05p010313' => 'qlo', 'QL06p034627' => 'qlo', 'QL10p001889' => 'qlo', 'QL10p010846' => 'qlo', 'RcHm_v2.0_Chr1g0350621' => 'rch', 'RcHm_v2.0_Chr1g0350641' => 'rch', 'RcHm_v2.0_Chr2g0092891' => 'rch', 'RcHm_v2.0_Chr2g0100251' => 'rch', 'RcHm_v2.0_Chr2g0158661' => 'rch', 'RcHm_v2.0_Chr2g0172741' => 'rch', 'RcHm_v2.0_Chr4g0429571' => 'rch', 'RcHm_v2.0_Chr5g0042471' => 'rch', 'RcHm_v2.0_Chr7g0189451' => 'rch', 'Rhsim08G0052000' => 'rsi', 'Rhsim08G0174400' => 'rsi', 'Rhsim08G0193200' => 'rsi', 'Rhsim10G0214800' => 'rsi', 'Rhsim10G0214900' => 'rsi', 'Rhsim10G0215000' => 'rsi', 'Rhsim12G0022900' => 'rsi', 'Rhsim12G0177500' => 'rsi', 'Rhsim12G0177700' => 'rsi', 'Sabra03G0122600' => 'sbr', 'Sabra05G0097400' => 'sbr', 'Sabra12G0064100' => 'sbr', 'Sabra15G0121300' => 'sbr', 'SalBow2G0642' => 'sbo', 'SalBow5G2667' => 'sbo', 'SalBow5G4873' => 'sbo', 'SalBow8G2395' => 'sbo', 'Sc03g0003290' => 'sci', 'Sc10g0010130' => 'sci', 'Sc22g0003650' => 'sci', 'Sed0001603' => 'sed', 'Sed0004259' => 'sed', 'Sed0006789' => 'sed', 'Sed0011838' => 'sed', 'Sed0012964' => 'sed', 'Sed0016383' => 'sed', 'Sed0019010' => 'sed', 'Sed0020188' => 'sed', 'SEGI_04702' => 'sgi', 'SEGI_17231' => 'sgi', 'SEGI_18877' => 'sgi', 'SEGI_25196' => 'sgi', 'SEGI_25515' => 'sgi', 'SEGI_28445' => 'sgi', 'SEGI_37452' => 'sgi', 'SGA_v2.0_scaffold188G40336' => 'sas', 'SGA_v2.0_scaffold228G43247' => 'sas', 'SGA_v2.0_scaffold280G46853' => 'sas', 'SGA_v2.0_scaffold34G13808' => 'sas', 'SGA_v2.0_scaffold40G15576' => 'sas', 'SGA_v2.0_scaffold611G53188' => 'sas', 'SGA_v2.0_scaffold78G25461' => 'sas', 'SGA_v2.0_scaffold90G27888' => 'sas', 'SHI08601' => 'shi', 'SHI08606' => 'shi', 'SHI17117' => 'shi', 'SHI17119' => 'shi', 'SMO118G0201' => 'smo', 'SMO169G0247' => 'smo', 'SMO176G0006' => 'smo', 'SMO176G0015' => 'smo', 'SMO202G0006' => 'smo', 'SMO240G0050' => 'smo', 'SMO286G0009' => 'smo', 'SMO338G0033' => 'smo', 'SMO356G0533' => 'smo', 'SMO364G0382' => 'smo', 'SMO367G0166' => 'smo', 'SMO367G1098' => 'smo', 'Solyc01g009920.3' => 'sly', 'Solyc01g099300.3' => 'sly', 'Solyc02g084700.3' => 'sly', 'Solyc03g097520.3' => 'sly', 'Solyc06g071580.3' => 'sly', 'Solyc10g081760.3' => 'sly', 'Sopen01g005480' => 'spe', 'Sopen01g042850' => 'spe', 'Sopen02g029370' => 'spe', 'Sopen03g028280' => 'spe', 'Sopen06g027870' => 'spe', 'Sopen10g032270' => 'spe', 'Sp5g18180' => 'spa', 'Sp6g12880' => 'spa', 'Sp6g30850' => 'spa', 'Sp7g22960' => 'spa', 'Sp7g34010' => 'spa', 'SpUn1326_0010' => 'spa', 'TAR371G0242' => 'tar', 'TAR622G0638' => 'tar', 'TAR628G1548' => 'tar', 'TAR629G1079' => 'tar', 'TAR629G3413' => 'tar', 'THA.LOC104804249' => 'tha', 'THA.LOC104808315' => 'tha', 'THA.LOC104809238' => 'tha', 'THA.LOC104825484' => 'tha', 'Thecc.01G025500' => 'tca', 'Thecc.03G015800' => 'tca', 'Thecc.03G018000' => 'tca', 'Thecc.03G134800' => 'tca', 'Thecc.04G014700' => 'tca', 'Thhalv10006991m.g' => 'esa', 'Thhalv10012707m.g' => 'esa', 'Thhalv10015739m.g' => 'esa', 'Thhalv10024553m.g' => 'esa', 'Thhalv10024673m.g' => 'esa', 'Thhalv10029187m.g' => 'esa', 'TPR.G12971' => 'tpr', 'TPR.G29396' => 'tpr', 'TPR.G33376' => 'tpr', 'TPR.G35508' => 'tpr', 'TPR.G35516' => 'tpr', 'TPR.G37317' => 'tpr', 'TPR.G37389' => 'tpr', 'TPR.G37523' => 'tpr', 'TPR.G559' => 'tpr', 'TWI14G0070' => 'twi', 'TWI14G0729' => 'twi', 'TWI18G0596' => 'twi', 'TWI39G0780' => 'twi', 'TWI39G0850' => 'twi', 'TWI73G1052' => 'twi', 'unitig_52.g17485' => 'ugi', 'unitig_61.g26355' => 'ugi', 'vmacro01040' => 'vma', 'vmacro16731' => 'vma', 'vmacro18270' => 'vma', 'vmacro19142' => 'vma', 'vmacro19407' => 'vma', 'vmacro19408' => 'vma', 'vmacro21899' => 'vma', 'vmacro21900' => 'vma', 'vmacro21901' => 'vma', 'VMungo0251G0490' => 'vmu', 'VMungo0251G1748' => 'vmu', 'VMungo1309G0421' => 'vmu', 'Zm00001eb086500' => 'zma', 'Zm00001eb150680' => 'zma', 'Zm00001eb162330' => 'zma', 'Zm00001eb203130' => 'zma', 'Zm00001eb369480' => 'zma', 'Zm00001eb382340' => 'zma', 'Zm00001eb416360' => 'zma' ) $gf_id = 'HOM05D000902' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000902' ) $data_identifier = 'HOM05D000902' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 13, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 10, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 6, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 9, 'hma' => (int) 12, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 4, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 6, 'ppa' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 6, 'rch' => (int) 9, 'rsi' => (int) 9, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 12, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 3, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416360' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000902', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '663', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02470' => 'bna', 'A01p16260' => 'bna', 'A02p01680' => 'bna', 'A03p16600' => 'bna', 'A03p55660' => 'bna', 'A03p64160' => 'bna', 'A03p64170' => 'bna', 'A08p31900' => 'bna', 'A09p59530' => 'bna', 'A10p08230' => 'bna', 'A10p25090' => 'bna', 'Aa31LG3G7100' => 'aar', 'Aa31LG3G7110' => 'aar', 'Aa31LG6G13160' => 'aar', 'Aa31LG7G10770' => 'aar', 'Aa31LG7G3830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2723' => 'aag', 'Actinidia08045' => 'ach', 'Actinidia08888' => 'ach', 'Actinidia18333' => 'ach', 'Actinidia19334' => 'ach', 'Actinidia25552' => 'ach', 'Actinidia26089' => 'ach', 'Actinidia30615' => 'ach', 'Actinidia30616' => 'ach', 'Actinidia33083' => 'ach', 'Actinidia35762' => 'ach', 'Ah.02g110620' => 'amhyb', 'Ah.11g046390' => 'amhyb', 'AL1G31670' => 'aly', 'AL6G23730' => 'aly', 'AL7G14740' => 'aly', 'AL7G14750' => 'aly', 'AL7G14760' => 'aly', 'AL7G28220' => 'aly', 'AL8G24940' => 'aly', 'Aqoxy3G01665' => 'aox', 'Aqoxy3G02853' => 'aox', 'Aqoxy5G01513' => 'aox', 'Aqoxy5G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8SKA4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ75LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKDA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0LJZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7REX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZP4YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWX7I5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2QKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS0L9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPCD8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q161UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC7XCF' => 'arhy', 'AT1G19100' => 'ath', 'AT4G24970' => 'ath', 'AT4G36270' => 'ath', 'AT4G36280' => 'ath', 'AT4G36290' => 'ath', 'AT5G13130' => 'ath', 'AT5G50780' => 'ath', 'ATR0582G266' => 'atr', 'ATR0661G195' => 'atr', 'ATR1152G031' => 'atr', 'Atru.chr11.2382' => 'acertr', 'Atru.chr12.2337' => 'acertr', 'Atru.chr3.744' => 'acertr', 'Atru.chr6.1870' => 'acertr', 'Atru.chr9.2515' => 'acertr', 'AUR62004120' => 'cqu', 'AUR62005667' => 'cqu', 'AUR62007634' => 'cqu', 'AUR62008186' => 'cqu', 'AUR62008187' => 'cqu', 'AUR62008188' => 'cqu', 'AUR62027954' => 'cqu', 'AUR62028766' => 'cqu', 'AUR62028767' => 'cqu', 'AUR62028768' => 'cqu', 'AUR62028886' => 'cqu', 'AUR62029563' => 'cqu', 'AUR62038832' => 'cqu', 'BcaB01g04149' => 'bca', 'BcaB03g12940' => 'bca', 'BcaB03g13090' => 'bca', 'BcaB03g14466' => 'bca', 'BcaB05g24035' => 'bca', 'BcaC01g06050' => 'bca', 'BcaC04g19148' => 'bca', 'BcaC04g20761' => 'bca', 'BcaC06g32845' => 'bca', 'BcaC07g41274' => 'bca', 'BcaC09g50827' => 'bca', 'BcaNung00741' => 'bca', 'BcaNung00742' => 'bca', 'BcaNung01859' => 'bca', 'BcaNung03985' => 'bca', 'BcaNung03989' => 'bca', 'BcaNung05661' => 'bca', 'BolC1t00257H' => 'bol', 'BolC1t01956H' => 'bol', 'BolC2t06534H' => 'bol', 'BolC3t14334H' => 'bol', 'BolC5t30451H' => 'bol', 'BolC7t45880H' => 'bol', 'BolC7t46586H' => 'bol', 'BolC8t49301H' => 'bol', 'BolC8t51837H' => 'bol', 'BolC9t56822H' => 'bol', 'BolC9t59235H' => 'bol', 'BraA01t00234Z' => 'bra', 'BraA01t01563Z' => 'bra', 'BraA02t05147Z' => 'bra', 'BraA03t10947Z' => 'bra', 'BraA03t14633Z' => 'bra', 'BraA08t35112Z' => 'bra', 'BraA09t41330Z' => 'bra', 'BraA10t44570Z' => 'bra', 'C01p02670' => 'bna', 'C01p20260' => 'bna', 'C02p05890' => 'bna', 'C03p19530' => 'bna', 'C05p17470' => 'bna', 'C07p53900' => 'bna', 'C07p61630' => 'bna', 'C08p16800' => 'bna', 'C08p42810' => 'bna', 'C09p39480' => 'bna', 'C09p63980' => 'bna', 'CAN.G1001.7' => 'can', 'CAN.G1034.55' => 'can', 'CAN.G143.7' => 'can', 'CAN.G3340.1' => 'can', 'CAN.G358.19' => 'can', 'CAN.G373.2' => 'can', 'CAN.G674.16' => 'can', 'CAN.G674.17' => 'can', 'CAN.G674.18' => 'can', 'CAN.G732.2' => 'can', 'CAN.G732.3' => 'can', 'CAN.G993.39' => 'can', 'CANSAT01G2052' => 'cansat', 'CANSAT80G0070' => 'cansat', 'CANSAT80G0483' => 'cansat', 'CANSAT80G0625' => 'cansat', 'CARHR019690' => 'chi', 'CARHR080280' => 'chi', 'CARHR152750' => 'chi', 'CARHR152760' => 'chi', 'CARHR152770' => 'chi', 'CARHR200340' => 'chi', 'CARHR232370' => 'chi', 'CARHR244670' => 'chi', 'CARHR244680' => 'chi', 'CARHR257520' => 'chi', 'Carub.0001s1872' => 'cru', 'Carub.0006s1130' => 'cru', 'Carub.0007s0396' => 'cru', 'Carub.0007s0397' => 'cru', 'Carub.0007s1608' => 'cru', 'Carub.0008s1068' => 'cru', 'Carub.0008s1077' => 'cru', 'Ca_16158_v3' => 'car', 'Ca_17571_v3' => 'car', 'Ca_21936_v3' => 'car', 'Ca_22350_v3' => 'car', 'CBR_g22445' => 'cbr', 'CBR_g26290' => 'cbr', 'Cc04_g09610' => 'ccan', 'Cc04_g12280' => 'ccan', 'Cc07_g10230' => 'ccan', 'CDE02G0093' => 'cde', 'CDE02G0701' => 'cde', 'CDE04G1050' => 'cde', 'CDE05G1833' => 'cde', 'CDE05G3058' => 'cde', 'CDE05G3380' => 'cde', 'CDE06G0536' => 'cde', 'Cfa006923' => 'cfa', 'Cfa009402' => 'cfa', 'Cfa018751' => 'cfa', 'Cfa019164' => 'cfa', 'Cfa022935' => 'cfa', 'Ciclev10019081m.g' => 'ccl', 'Ciclev10025076m.g' => 'ccl', 'Ciclev10030712m.g' => 'ccl', 'Ciclev10033760m.g' => 'ccl', 'CiPaw.05G105600' => 'cil', 'CiPaw.08G136700' => 'cil', 'CiPaw.11G003900' => 'cil', 'CiPaw.11G023700' => 'cil', 'CiPaw.12G003700' => 'cil', 'ClCG06G017100' => 'cla', 'ClCG06G018110' => 'cla', 'ClCG07G008800' => 'cla', 'ClCG07G015330' => 'cla', 'COL.COLO4_13698' => 'col', 'COL.COLO4_16659' => 'col', 'COL.COLO4_21986' => 'col', 'COL.COLO4_24049' => 'col', 'COL.COLO4_29061' => 'col', 'COL.COLO4_29075' => 'col', 'COL.COLO4_30094' => 'col', 'Cpa.g.c33689' => 'cpa', 'Cpa.g.sc108.39' => 'cpa', 'Cpa.g.sc108.41' => 'cpa', 'Cpa.g.sc1163.1' => 'cpa', 'Cpa.g.sc4.155' => 'cpa', 'Cpa.g.sc6.194' => 'cpa', 'CsaV3_1G000340' => 'csa', 'CsaV3_1G001400' => 'csa', 'CsaV3_4G002220' => 'csa', 'CsaV3_4G005370' => 'csa', 'CSS0007487' => 'camsi', 'CSS0008066' => 'camsi', 'CSS0009120' => 'camsi', 'CSS0015512' => 'camsi', 'CSS0022409' => 'camsi', 'CSS0025358' => 'camsi', 'CSS0044547' => 'camsi', 'DCAR_013057' => 'dca', 'DCAR_015058' => 'dca', 'DCAR_016027' => 'dca', 'DCAR_017327' => 'dca', 'DCAR_020743' => 'dca', 'DCAR_026157' => 'dca', 'DCAR_032339' => 'dca', 'DCAR_032340' => 'dca', 'Dinv11200' => 'din', 'Dinv11201' => 'din', 'Dinv20631' => 'din', 'Dinv23182' => 'din', 'Dinv33466' => 'din', 'Dinv33583' => 'din', 'Dinv38565' => 'din', 'Duzib068G0200' => 'dzi', 'Duzib147G0132' => 'dzi', 'Duzib147G0635' => 'dzi', 'Duzib205G1670' => 'dzi', 'Duzib251G0606' => 'dzi', 'ECA232G3336' => 'eca', 'ECA232G3763' => 'eca', 'ECA232G4845' => 'eca', 'ECA234G1607' => 'eca', 'ECA246G0932' => 'eca', 'ECA247G0781' => 'eca', 'ECA247G1932' => 'eca', 'ECA247G2079' => 'eca', 'ECA247G3338' => 'eca', 'ECA247G4115' => 'eca', 'EL10Ac3g06552' => 'bvu', 'EL10Ac5g10721' => 'bvu', 'EL10Ac5g10722' => 'bvu', 'EL10Ac5g10723' => 'bvu', 'EL10Ac5g11361' => 'bvu', 'EL10Ac6g13553' => 'bvu', 'EL10As8g23872' => 'bvu', 'Eucgr.B00250' => 'egr', 'Eucgr.B00251' => 'egr', 'Eucgr.B03533' => 'egr', 'Eucgr.I02381' => 'egr', 'Eucgr.K02700' => 'egr', 'FAN02G0174' => 'fan', 'FAN02G3146' => 'fan', 'FAN04G1672' => 'fan', 'FAN04G2273' => 'fan', 'FAN05G2791' => 'fan', 'FAN05G4035' => 'fan', 'FAN07G0834' => 'fan', 'FAN08G1198' => 'fan', 'FAN09G4182' => 'fan', 'FAN12G0496' => 'fan', 'FAN13G1027' => 'fan', 'FAN13G2951' => 'fan', 'FAN14G0705' => 'fan', 'FAN14G0720' => 'fan', 'FAN17G0201' => 'fan', 'FAN17G2665' => 'fan', 'FAN18G1456' => 'fan', 'FAN18G1525' => 'fan', 'FAN18G3500' => 'fan', 'FAN28G2670' => 'fan', 'FvH4_1g12391' => 'fve', 'FvH4_4g23220' => 'fve', 'FvH4_5g08810' => 'fve', 'FvH4_5g28960' => 'fve', 'FvH4_6g42820' => 'fve', 'FvH4_6g51110' => 'fve', 'Glyma.02G051802' => 'gma', 'Glyma.04G185300' => 'gma', 'Glyma.05G202900' => 'gma', 'Glyma.08G010300' => 'gma', 'Glyma.16G131900' => 'gma', 'Glyma.17G087900' => 'gma', 'Gohir.A07G048600' => 'ghi', 'Gohir.A11G179000' => 'ghi', 'Gohir.A12G140900' => 'ghi', 'Gohir.A12G140950' => 'ghi', 'Gohir.A12G191700' => 'ghi', 'Gohir.A13G086300' => 'ghi', 'Gohir.D07G052900' => 'ghi', 'Gohir.D11G186600' => 'ghi', 'Gohir.D12G145575' => 'ghi', 'Gohir.D12G145650' => 'ghi', 'Gohir.D12G145725' => 'ghi', 'Gohir.D12G194050' => 'ghi', 'Gohir.D13G091800' => 'ghi', 'Gorai.001G055900' => 'gra', 'Gorai.007G198400' => 'gra', 'Gorai.008G157000' => 'gra', 'Gorai.008G157100' => 'gra', 'Gorai.008G208700' => 'gra', 'Gorai.010G138700' => 'gra', 'GSVIVG01000977001' => 'vvi', 'GSVIVG01007708001' => 'vvi', 'GSVIVG01008587001' => 'vvi', 'GSVIVG01018849001' => 'vvi', 'GSVIVG01032432001' => 'vvi', 'HanXRQChr02g0034131' => 'han', 'HanXRQChr02g0035981' => 'han', 'HanXRQChr02g0035991' => 'han', 'HanXRQChr05g0155611' => 'han', 'HanXRQChr05g0155621' => 'han', 'HanXRQChr08g0236501' => 'han', 'HanXRQChr09g0261321' => 'han', 'HanXRQChr09g0272081' => 'han', 'HanXRQChr10g0310741' => 'han', 'HanXRQChr11g0325591' => 'han', 'HanXRQChr12g0385691' => 'han', 'HanXRQChr13g0387801' => 'han', 'HanXRQChr15g0463011' => 'han', 'Haze_03826' => 'cav', 'Haze_03827' => 'cav', 'Haze_07183' => 'cav', 'Haze_07537' => 'cav', 'Haze_07539' => 'cav', 'Haze_12461' => 'cav', 'Haze_16115' => 'cav', 'Haze_16808' => 'cav', 'Haze_18531' => 'cav', 'Hma1.2p1_0046F.1_g026700' => 'hma', 'Hma1.2p1_0046F.1_g026710' => 'hma', 'Hma1.2p1_0168F.1_g074340' => 'hma', 'Hma1.2p1_0266F.1_g107030' => 'hma', 'Hma1.2p1_0266F.1_g107060' => 'hma', 'Hma1.2p1_0275F.1_g110510' => 'hma', 'Hma1.2p1_0592F.1_g185490' => 'hma', 'Hma1.2p1_0592F.1_g185500' => 'hma', 'Hma1.2p1_0592F.1_g185510' => 'hma', 'Hma1.2p1_0592F.1_g185520' => 'hma', 'Hma1.2p1_0592F.1_g185530' => 'hma', 'Hma1.2p1_0818F.1_g223450' => 'hma', 'HPP92_009708' => 'vpl', 'HPP92_009793' => 'vpl', 'HPP92_009796' => 'vpl', 'HPP92_009797' => 'vpl', 'HPP92_014940' => 'vpl', 'HPP92_014988' => 'vpl', 'Hund02463' => 'sun', 'Hund02760' => 'sun', 'Hund05071' => 'sun', 'Hund10108' => 'sun', 'Hund11204' => 'sun', 'Hund14016' => 'sun', 'Hund16464' => 'sun', 'Lalb_Chr09g0333391' => 'lal', 'Lalb_Chr11g0070461' => 'lal', 'Lalb_Chr12g0201671' => 'lal', 'Lalb_Chr13g0297161' => 'lal', 'Lj1g0002823' => 'lja', 'Lj3C1074T6' => 'lonja', 'Lj4A212T28' => 'lonja', 'Lj4g0005516' => 'lja', 'Lj4g0013705' => 'lja', 'Lj4g0027865' => 'lja', 'Lj5C92G16' => 'lonja', 'Lj5C92T12' => 'lonja', 'Lj7C596T3' => 'lonja', 'Lj9A446G59' => 'lonja', 'Lj9A482G21' => 'lonja', 'Lsat_1_v5_gn_1_28261' => 'lsa', 'Lsat_1_v5_gn_1_28281' => 'lsa', 'Lsat_1_v5_gn_1_32721' => 'lsa', 'Lsat_1_v5_gn_4_151760' => 'lsa', 'Lsat_1_v5_gn_4_2120' => 'lsa', 'Lsat_1_v5_gn_4_75761' => 'lsa', 'Lsat_1_v5_gn_5_10920' => 'lsa', 'Manes.02G099900' => 'mes', 'Manes.11G096200' => 'mes', 'Manes.12G007200' => 'mes', 'Manes.14G048300' => 'mes', 'Manes.17G114700' => 'mes', 'Mapoly0002s0070' => 'mpo', 'Mapoly0029s0099' => 'mpo', 'MBI07_g24742_MAGBIO' => 'mbi', 'MBI10_g27988_MAGBIO' => 'mbi', 'MBI11_g13057_MAGBIO' => 'mbi', 'MD02G1137200' => 'mdo', 'MD06G1137200' => 'mdo', 'MD07G1122300' => 'mdo', 'MD09G1078200' => 'mdo', 'MD13G1123700' => 'mdo', 'MD14G1151900' => 'mdo', 'MD17G1030900' => 'mdo', 'MD17G1068200' => 'mdo', 'MD17G1068600' => 'mdo', 'Medtr3g077540' => 'mtr', 'Medtr4g105530' => 'mtr', 'Medtr8g076580' => 'mtr', 'Medtr8g076590' => 'mtr', 'Medtr8g096410' => 'mtr', 'MELO3C016411.2' => 'cme', 'MELO3C017780.2' => 'cme', 'MELO3C022560.2' => 'cme', 'MELO3C026187.2' => 'cme', 'MELO3C026286.2' => 'cme', 'MELO3C032854.2' => 'cme', 'Migut.H02495' => 'egut', 'Migut.I00561' => 'egut', 'Migut.K01015' => 'egut', 'Migut.K01016' => 'egut', 'Migut.L00743' => 'egut', 'Migut.L00744' => 'egut', 'Migut.L00746' => 'egut', 'Migut.L00798' => 'egut', 'Migut.L00799' => 'egut', 'Migut.N02096' => 'egut', 'MSTRG.11259' => 'ama', 'MSTRG.23142' => 'ama', 'MSTRG.2499' => 'ama', 'Nitab4.5_0000003g0730' => 'nta', 'Nitab4.5_0000137g0020' => 'nta', 'Nitab4.5_0000721g0210' => 'nta', 'Nitab4.5_0000723g0050' => 'nta', 'Nitab4.5_0000913g0070' => 'nta', 'Nitab4.5_0001332g0040' => 'nta', 'Nitab4.5_0001771g0050' => 'nta', 'Nitab4.5_0001918g0050' => 'nta', 'Nitab4.5_0002686g0030' => 'nta', 'Nitab4.5_0003156g0020' => 'nta', 'Nitab4.5_0003383g0040' => 'nta', 'Nitab4.5_0003918g0010' => 'nta', 'Nitab4.5_0006760g0010' => 'nta', 'Nn1g05981' => 'nnu', 'Nn1g06288' => 'nnu', 'Nn3g16371' => 'nnu', 'Nn3g16786' => 'nnu', 'Nn4g22232' => 'nnu', 'Oeu005144.1' => 'oeu', 'Oeu005145.1' => 'oeu', 'Oeu011348.1' => 'oeu', 'Oeu016415.1' => 'oeu', 'Oeu023501.1' => 'oeu', 'Oeu044473.1' => 'oeu', 'Oeu048892.2' => 'oeu', 'Os01g0549200' => 'osa', 'Os02g0469300' => 'osa', 'Os04g0311100' => 'osa', 'Os06g0474900' => 'osa', 'Os10g0181700' => 'osa', 'Os11g0454800' => 'osa', 'Peaxi162Scf00037g00714' => 'pax', 'Peaxi162Scf00084g01217' => 'pax', 'Peaxi162Scf00257g00217' => 'pax', 'Peaxi162Scf00516g00215' => 'pax', 'Peaxi162Scf00689g00123' => 'pax', 'PGR044G2719' => 'pgr', 'PGR083G1360' => 'pgr', 'PGR102G2849' => 'pgr', 'PGR119G2534' => 'pgr', 'PGSC0003DMG400003538' => 'stu', 'PGSC0003DMG400028138' => 'stu', 'PGSC0003DMG400031732' => 'stu', 'PGSC0003DMG400038165' => 'stu', 'Phvul.002G284600' => 'pvu', 'Phvul.003G258200' => 'pvu', 'Phvul.009G176500' => 'pvu', 'Potri.003G167201' => 'ptr', 'Potri.005G118400' => 'ptr', 'Potri.012G089000' => 'ptr', 'Potri.012G102800' => 'ptr', 'Potri.015G079400' => 'ptr', 'Potri.015G100900' => 'ptr', 'Pp3c14_9810' => 'ppa', 'Pp3c15_10450' => 'ppa', 'Pp3c20_19150' => 'ppa', 'Pp3c23_12740' => 'ppa', 'Pp3c23_6310' => 'ppa', 'Pp3c24_3720' => 'ppa', 'Pp3c27_2580' => 'ppa', 'Pp3c9_8990' => 'ppa', 'PRCOL_00002854' => 'pco', 'Prupe.1G221200' => 'ppe', 'Prupe.3G289000' => 'ppe', 'Prupe.5G147000' => 'ppe', 'Prupe.6G157300' => 'ppe', 'Prupe.7G163400' => 'ppe', 'Psat0s2177g0040' => 'psa', 'Psat3g174760' => 'psa', 'Psat3g192160' => 'psa', 'Psat4g058520' => 'psa', 'Psat4g096840' => 'psa', 'Psat7g037320' => 'psa', 'PSO017G1274' => 'pso', 'PSO017G5166' => 'pso', 'PSO063G4558' => 'pso', 'PSO170G4458' => 'pso', 'PSO170G5005' => 'pso', 'PSO210G6156' => 'pso', 'PSO210G6635' => 'pso', 'PSO210G7397' => 'pso', 'PSO210G7700' => 'pso', 'PSO455G0035' => 'pso', 'PSO455G0180' => 'pso', 'PSO478G4515' => 'pso', 'PSO832G1305' => 'pso', 'PSO832G3489' => 'pso', 'QL02p075247' => 'qlo', 'QL03p051148' => 'qlo', 'QL05p010313' => 'qlo', 'QL06p034627' => 'qlo', 'QL10p001889' => 'qlo', 'QL10p010846' => 'qlo', 'RcHm_v2.0_Chr1g0350621' => 'rch', 'RcHm_v2.0_Chr1g0350641' => 'rch', 'RcHm_v2.0_Chr2g0092891' => 'rch', 'RcHm_v2.0_Chr2g0100251' => 'rch', 'RcHm_v2.0_Chr2g0158661' => 'rch', 'RcHm_v2.0_Chr2g0172741' => 'rch', 'RcHm_v2.0_Chr4g0429571' => 'rch', 'RcHm_v2.0_Chr5g0042471' => 'rch', 'RcHm_v2.0_Chr7g0189451' => 'rch', 'Rhsim08G0052000' => 'rsi', 'Rhsim08G0174400' => 'rsi', 'Rhsim08G0193200' => 'rsi', 'Rhsim10G0214800' => 'rsi', 'Rhsim10G0214900' => 'rsi', 'Rhsim10G0215000' => 'rsi', 'Rhsim12G0022900' => 'rsi', 'Rhsim12G0177500' => 'rsi', 'Rhsim12G0177700' => 'rsi', 'Sabra03G0122600' => 'sbr', 'Sabra05G0097400' => 'sbr', 'Sabra12G0064100' => 'sbr', 'Sabra15G0121300' => 'sbr', 'SalBow2G0642' => 'sbo', 'SalBow5G2667' => 'sbo', 'SalBow5G4873' => 'sbo', 'SalBow8G2395' => 'sbo', 'Sc03g0003290' => 'sci', 'Sc10g0010130' => 'sci', 'Sc22g0003650' => 'sci', 'Sed0001603' => 'sed', 'Sed0004259' => 'sed', 'Sed0006789' => 'sed', 'Sed0011838' => 'sed', 'Sed0012964' => 'sed', 'Sed0016383' => 'sed', 'Sed0019010' => 'sed', 'Sed0020188' => 'sed', 'SEGI_04702' => 'sgi', 'SEGI_17231' => 'sgi', 'SEGI_18877' => 'sgi', 'SEGI_25196' => 'sgi', 'SEGI_25515' => 'sgi', 'SEGI_28445' => 'sgi', 'SEGI_37452' => 'sgi', 'SGA_v2.0_scaffold188G40336' => 'sas', 'SGA_v2.0_scaffold228G43247' => 'sas', 'SGA_v2.0_scaffold280G46853' => 'sas', 'SGA_v2.0_scaffold34G13808' => 'sas', 'SGA_v2.0_scaffold40G15576' => 'sas', 'SGA_v2.0_scaffold611G53188' => 'sas', 'SGA_v2.0_scaffold78G25461' => 'sas', 'SGA_v2.0_scaffold90G27888' => 'sas', 'SHI08601' => 'shi', 'SHI08606' => 'shi', 'SHI17117' => 'shi', 'SHI17119' => 'shi', 'SMO118G0201' => 'smo', 'SMO169G0247' => 'smo', 'SMO176G0006' => 'smo', 'SMO176G0015' => 'smo', 'SMO202G0006' => 'smo', 'SMO240G0050' => 'smo', 'SMO286G0009' => 'smo', 'SMO338G0033' => 'smo', 'SMO356G0533' => 'smo', 'SMO364G0382' => 'smo', 'SMO367G0166' => 'smo', 'SMO367G1098' => 'smo', 'Solyc01g009920.3' => 'sly', 'Solyc01g099300.3' => 'sly', 'Solyc02g084700.3' => 'sly', 'Solyc03g097520.3' => 'sly', 'Solyc06g071580.3' => 'sly', 'Solyc10g081760.3' => 'sly', 'Sopen01g005480' => 'spe', 'Sopen01g042850' => 'spe', 'Sopen02g029370' => 'spe', 'Sopen03g028280' => 'spe', 'Sopen06g027870' => 'spe', 'Sopen10g032270' => 'spe', 'Sp5g18180' => 'spa', 'Sp6g12880' => 'spa', 'Sp6g30850' => 'spa', 'Sp7g22960' => 'spa', 'Sp7g34010' => 'spa', 'SpUn1326_0010' => 'spa', 'TAR371G0242' => 'tar', 'TAR622G0638' => 'tar', 'TAR628G1548' => 'tar', 'TAR629G1079' => 'tar', 'TAR629G3413' => 'tar', 'THA.LOC104804249' => 'tha', 'THA.LOC104808315' => 'tha', 'THA.LOC104809238' => 'tha', 'THA.LOC104825484' => 'tha', 'Thecc.01G025500' => 'tca', 'Thecc.03G015800' => 'tca', 'Thecc.03G018000' => 'tca', 'Thecc.03G134800' => 'tca', 'Thecc.04G014700' => 'tca', 'Thhalv10006991m.g' => 'esa', 'Thhalv10012707m.g' => 'esa', 'Thhalv10015739m.g' => 'esa', 'Thhalv10024553m.g' => 'esa', 'Thhalv10024673m.g' => 'esa', 'Thhalv10029187m.g' => 'esa', 'TPR.G12971' => 'tpr', 'TPR.G29396' => 'tpr', 'TPR.G33376' => 'tpr', 'TPR.G35508' => 'tpr', 'TPR.G35516' => 'tpr', 'TPR.G37317' => 'tpr', 'TPR.G37389' => 'tpr', 'TPR.G37523' => 'tpr', 'TPR.G559' => 'tpr', 'TWI14G0070' => 'twi', 'TWI14G0729' => 'twi', 'TWI18G0596' => 'twi', 'TWI39G0780' => 'twi', 'TWI39G0850' => 'twi', 'TWI73G1052' => 'twi', 'unitig_52.g17485' => 'ugi', 'unitig_61.g26355' => 'ugi', 'vmacro01040' => 'vma', 'vmacro16731' => 'vma', 'vmacro18270' => 'vma', 'vmacro19142' => 'vma', 'vmacro19407' => 'vma', 'vmacro19408' => 'vma', 'vmacro21899' => 'vma', 'vmacro21900' => 'vma', 'vmacro21901' => 'vma', 'VMungo0251G0490' => 'vmu', 'VMungo0251G1748' => 'vmu', 'VMungo1309G0421' => 'vmu', 'Zm00001eb086500' => 'zma', 'Zm00001eb150680' => 'zma', 'Zm00001eb162330' => 'zma', 'Zm00001eb203130' => 'zma', 'Zm00001eb369480' => 'zma', 'Zm00001eb382340' => 'zma', 'Zm00001eb416360' => 'zma' ), 'gf_id' => 'HOM05D000902', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000902' ), 'data_identifier' => 'HOM05D000902', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000902', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '663', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02470' => 'bna', 'A01p16260' => 'bna', 'A02p01680' => 'bna', 'A03p16600' => 'bna', 'A03p55660' => 'bna', 'A03p64160' => 'bna', 'A03p64170' => 'bna', 'A08p31900' => 'bna', 'A09p59530' => 'bna', 'A10p08230' => 'bna', 'A10p25090' => 'bna', 'Aa31LG3G7100' => 'aar', 'Aa31LG3G7110' => 'aar', 'Aa31LG6G13160' => 'aar', 'Aa31LG7G10770' => 'aar', 'Aa31LG7G3830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2723' => 'aag', 'Actinidia08045' => 'ach', 'Actinidia08888' => 'ach', 'Actinidia18333' => 'ach', 'Actinidia19334' => 'ach', 'Actinidia25552' => 'ach', 'Actinidia26089' => 'ach', 'Actinidia30615' => 'ach', 'Actinidia30616' => 'ach', 'Actinidia33083' => 'ach', 'Actinidia35762' => 'ach', 'Ah.02g110620' => 'amhyb', 'Ah.11g046390' => 'amhyb', 'AL1G31670' => 'aly', 'AL6G23730' => 'aly', 'AL7G14740' => 'aly', 'AL7G14750' => 'aly', 'AL7G14760' => 'aly', 'AL7G28220' => 'aly', 'AL8G24940' => 'aly', 'Aqoxy3G01665' => 'aox', 'Aqoxy3G02853' => 'aox', 'Aqoxy5G01513' => 'aox', 'Aqoxy5G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8SKA4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ75LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKDA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0LJZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7REX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZP4YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWX7I5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2QKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS0L9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPCD8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q161UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC7XCF' => 'arhy', 'AT1G19100' => 'ath', 'AT4G24970' => 'ath', 'AT4G36270' => 'ath', 'AT4G36280' => 'ath', 'AT4G36290' => 'ath', 'AT5G13130' => 'ath', 'AT5G50780' => 'ath', 'ATR0582G266' => 'atr', 'ATR0661G195' => 'atr', 'ATR1152G031' => 'atr', 'Atru.chr11.2382' => 'acertr', 'Atru.chr12.2337' => 'acertr', 'Atru.chr3.744' => 'acertr', 'Atru.chr6.1870' => 'acertr', 'Atru.chr9.2515' => 'acertr', 'AUR62004120' => 'cqu', 'AUR62005667' => 'cqu', 'AUR62007634' => 'cqu', 'AUR62008186' => 'cqu', 'AUR62008187' => 'cqu', 'AUR62008188' => 'cqu', 'AUR62027954' => 'cqu', 'AUR62028766' => 'cqu', 'AUR62028767' => 'cqu', 'AUR62028768' => 'cqu', 'AUR62028886' => 'cqu', 'AUR62029563' => 'cqu', 'AUR62038832' => 'cqu', 'BcaB01g04149' => 'bca', 'BcaB03g12940' => 'bca', 'BcaB03g13090' => 'bca', 'BcaB03g14466' => 'bca', 'BcaB05g24035' => 'bca', 'BcaC01g06050' => 'bca', 'BcaC04g19148' => 'bca', 'BcaC04g20761' => 'bca', 'BcaC06g32845' => 'bca', 'BcaC07g41274' => 'bca', 'BcaC09g50827' => 'bca', 'BcaNung00741' => 'bca', 'BcaNung00742' => 'bca', 'BcaNung01859' => 'bca', 'BcaNung03985' => 'bca', 'BcaNung03989' => 'bca', 'BcaNung05661' => 'bca', 'BolC1t00257H' => 'bol', 'BolC1t01956H' => 'bol', 'BolC2t06534H' => 'bol', 'BolC3t14334H' => 'bol', 'BolC5t30451H' => 'bol', 'BolC7t45880H' => 'bol', 'BolC7t46586H' => 'bol', 'BolC8t49301H' => 'bol', 'BolC8t51837H' => 'bol', 'BolC9t56822H' => 'bol', 'BolC9t59235H' => 'bol', 'BraA01t00234Z' => 'bra', 'BraA01t01563Z' => 'bra', 'BraA02t05147Z' => 'bra', 'BraA03t10947Z' => 'bra', 'BraA03t14633Z' => 'bra', 'BraA08t35112Z' => 'bra', 'BraA09t41330Z' => 'bra', 'BraA10t44570Z' => 'bra', 'C01p02670' => 'bna', 'C01p20260' => 'bna', 'C02p05890' => 'bna', 'C03p19530' => 'bna', 'C05p17470' => 'bna', 'C07p53900' => 'bna', 'C07p61630' => 'bna', 'C08p16800' => 'bna', 'C08p42810' => 'bna', 'C09p39480' => 'bna', 'C09p63980' => 'bna', 'CAN.G1001.7' => 'can', 'CAN.G1034.55' => 'can', 'CAN.G143.7' => 'can', 'CAN.G3340.1' => 'can', 'CAN.G358.19' => 'can', 'CAN.G373.2' => 'can', 'CAN.G674.16' => 'can', 'CAN.G674.17' => 'can', 'CAN.G674.18' => 'can', 'CAN.G732.2' => 'can', 'CAN.G732.3' => 'can', 'CAN.G993.39' => 'can', 'CANSAT01G2052' => 'cansat', 'CANSAT80G0070' => 'cansat', 'CANSAT80G0483' => 'cansat', 'CANSAT80G0625' => 'cansat', 'CARHR019690' => 'chi', 'CARHR080280' => 'chi', 'CARHR152750' => 'chi', 'CARHR152760' => 'chi', 'CARHR152770' => 'chi', 'CARHR200340' => 'chi', 'CARHR232370' => 'chi', 'CARHR244670' => 'chi', 'CARHR244680' => 'chi', 'CARHR257520' => 'chi', 'Carub.0001s1872' => 'cru', 'Carub.0006s1130' => 'cru', 'Carub.0007s0396' => 'cru', 'Carub.0007s0397' => 'cru', 'Carub.0007s1608' => 'cru', 'Carub.0008s1068' => 'cru', 'Carub.0008s1077' => 'cru', 'Ca_16158_v3' => 'car', 'Ca_17571_v3' => 'car', 'Ca_21936_v3' => 'car', 'Ca_22350_v3' => 'car', 'CBR_g22445' => 'cbr', 'CBR_g26290' => 'cbr', 'Cc04_g09610' => 'ccan', 'Cc04_g12280' => 'ccan', 'Cc07_g10230' => 'ccan', 'CDE02G0093' => 'cde', 'CDE02G0701' => 'cde', 'CDE04G1050' => 'cde', 'CDE05G1833' => 'cde', 'CDE05G3058' => 'cde', 'CDE05G3380' => 'cde', 'CDE06G0536' => 'cde', 'Cfa006923' => 'cfa', 'Cfa009402' => 'cfa', 'Cfa018751' => 'cfa', 'Cfa019164' => 'cfa', 'Cfa022935' => 'cfa', 'Ciclev10019081m.g' => 'ccl', 'Ciclev10025076m.g' => 'ccl', 'Ciclev10030712m.g' => 'ccl', 'Ciclev10033760m.g' => 'ccl', 'CiPaw.05G105600' => 'cil', 'CiPaw.08G136700' => 'cil', 'CiPaw.11G003900' => 'cil', 'CiPaw.11G023700' => 'cil', 'CiPaw.12G003700' => 'cil', 'ClCG06G017100' => 'cla', 'ClCG06G018110' => 'cla', 'ClCG07G008800' => 'cla', 'ClCG07G015330' => 'cla', 'COL.COLO4_13698' => 'col', 'COL.COLO4_16659' => 'col', 'COL.COLO4_21986' => 'col', 'COL.COLO4_24049' => 'col', 'COL.COLO4_29061' => 'col', 'COL.COLO4_29075' => 'col', 'COL.COLO4_30094' => 'col', 'Cpa.g.c33689' => 'cpa', 'Cpa.g.sc108.39' => 'cpa', 'Cpa.g.sc108.41' => 'cpa', 'Cpa.g.sc1163.1' => 'cpa', 'Cpa.g.sc4.155' => 'cpa', 'Cpa.g.sc6.194' => 'cpa', 'CsaV3_1G000340' => 'csa', 'CsaV3_1G001400' => 'csa', 'CsaV3_4G002220' => 'csa', 'CsaV3_4G005370' => 'csa', 'CSS0007487' => 'camsi', 'CSS0008066' => 'camsi', 'CSS0009120' => 'camsi', 'CSS0015512' => 'camsi', 'CSS0022409' => 'camsi', 'CSS0025358' => 'camsi', 'CSS0044547' => 'camsi', 'DCAR_013057' => 'dca', 'DCAR_015058' => 'dca', 'DCAR_016027' => 'dca', 'DCAR_017327' => 'dca', 'DCAR_020743' => 'dca', 'DCAR_026157' => 'dca', 'DCAR_032339' => 'dca', 'DCAR_032340' => 'dca', 'Dinv11200' => 'din', 'Dinv11201' => 'din', 'Dinv20631' => 'din', 'Dinv23182' => 'din', 'Dinv33466' => 'din', 'Dinv33583' => 'din', 'Dinv38565' => 'din', 'Duzib068G0200' => 'dzi', 'Duzib147G0132' => 'dzi', 'Duzib147G0635' => 'dzi', 'Duzib205G1670' => 'dzi', 'Duzib251G0606' => 'dzi', 'ECA232G3336' => 'eca', 'ECA232G3763' => 'eca', 'ECA232G4845' => 'eca', 'ECA234G1607' => 'eca', 'ECA246G0932' => 'eca', 'ECA247G0781' => 'eca', 'ECA247G1932' => 'eca', 'ECA247G2079' => 'eca', 'ECA247G3338' => 'eca', 'ECA247G4115' => 'eca', 'EL10Ac3g06552' => 'bvu', 'EL10Ac5g10721' => 'bvu', 'EL10Ac5g10722' => 'bvu', 'EL10Ac5g10723' => 'bvu', 'EL10Ac5g11361' => 'bvu', 'EL10Ac6g13553' => 'bvu', 'EL10As8g23872' => 'bvu', 'Eucgr.B00250' => 'egr', 'Eucgr.B00251' => 'egr', 'Eucgr.B03533' => 'egr', 'Eucgr.I02381' => 'egr', 'Eucgr.K02700' => 'egr', 'FAN02G0174' => 'fan', 'FAN02G3146' => 'fan', 'FAN04G1672' => 'fan', 'FAN04G2273' => 'fan', 'FAN05G2791' => 'fan', 'FAN05G4035' => 'fan', 'FAN07G0834' => 'fan', 'FAN08G1198' => 'fan', 'FAN09G4182' => 'fan', 'FAN12G0496' => 'fan', 'FAN13G1027' => 'fan', 'FAN13G2951' => 'fan', 'FAN14G0705' => 'fan', 'FAN14G0720' => 'fan', 'FAN17G0201' => 'fan', 'FAN17G2665' => 'fan', 'FAN18G1456' => 'fan', 'FAN18G1525' => 'fan', 'FAN18G3500' => 'fan', 'FAN28G2670' => 'fan', 'FvH4_1g12391' => 'fve', 'FvH4_4g23220' => 'fve', 'FvH4_5g08810' => 'fve', 'FvH4_5g28960' => 'fve', 'FvH4_6g42820' => 'fve', 'FvH4_6g51110' => 'fve', 'Glyma.02G051802' => 'gma', 'Glyma.04G185300' => 'gma', 'Glyma.05G202900' => 'gma', 'Glyma.08G010300' => 'gma', 'Glyma.16G131900' => 'gma', 'Glyma.17G087900' => 'gma', 'Gohir.A07G048600' => 'ghi', 'Gohir.A11G179000' => 'ghi', 'Gohir.A12G140900' => 'ghi', 'Gohir.A12G140950' => 'ghi', 'Gohir.A12G191700' => 'ghi', 'Gohir.A13G086300' => 'ghi', 'Gohir.D07G052900' => 'ghi', 'Gohir.D11G186600' => 'ghi', 'Gohir.D12G145575' => 'ghi', 'Gohir.D12G145650' => 'ghi', 'Gohir.D12G145725' => 'ghi', 'Gohir.D12G194050' => 'ghi', 'Gohir.D13G091800' => 'ghi', 'Gorai.001G055900' => 'gra', 'Gorai.007G198400' => 'gra', 'Gorai.008G157000' => 'gra', 'Gorai.008G157100' => 'gra', 'Gorai.008G208700' => 'gra', 'Gorai.010G138700' => 'gra', 'GSVIVG01000977001' => 'vvi', 'GSVIVG01007708001' => 'vvi', 'GSVIVG01008587001' => 'vvi', 'GSVIVG01018849001' => 'vvi', 'GSVIVG01032432001' => 'vvi', 'HanXRQChr02g0034131' => 'han', 'HanXRQChr02g0035981' => 'han', 'HanXRQChr02g0035991' => 'han', 'HanXRQChr05g0155611' => 'han', 'HanXRQChr05g0155621' => 'han', 'HanXRQChr08g0236501' => 'han', 'HanXRQChr09g0261321' => 'han', 'HanXRQChr09g0272081' => 'han', 'HanXRQChr10g0310741' => 'han', 'HanXRQChr11g0325591' => 'han', 'HanXRQChr12g0385691' => 'han', 'HanXRQChr13g0387801' => 'han', 'HanXRQChr15g0463011' => 'han', 'Haze_03826' => 'cav', 'Haze_03827' => 'cav', 'Haze_07183' => 'cav', 'Haze_07537' => 'cav', 'Haze_07539' => 'cav', 'Haze_12461' => 'cav', 'Haze_16115' => 'cav', 'Haze_16808' => 'cav', 'Haze_18531' => 'cav', 'Hma1.2p1_0046F.1_g026700' => 'hma', 'Hma1.2p1_0046F.1_g026710' => 'hma', 'Hma1.2p1_0168F.1_g074340' => 'hma', 'Hma1.2p1_0266F.1_g107030' => 'hma', 'Hma1.2p1_0266F.1_g107060' => 'hma', 'Hma1.2p1_0275F.1_g110510' => 'hma', 'Hma1.2p1_0592F.1_g185490' => 'hma', 'Hma1.2p1_0592F.1_g185500' => 'hma', 'Hma1.2p1_0592F.1_g185510' => 'hma', 'Hma1.2p1_0592F.1_g185520' => 'hma', 'Hma1.2p1_0592F.1_g185530' => 'hma', 'Hma1.2p1_0818F.1_g223450' => 'hma', 'HPP92_009708' => 'vpl', 'HPP92_009793' => 'vpl', 'HPP92_009796' => 'vpl', 'HPP92_009797' => 'vpl', 'HPP92_014940' => 'vpl', 'HPP92_014988' => 'vpl', 'Hund02463' => 'sun', 'Hund02760' => 'sun', 'Hund05071' => 'sun', 'Hund10108' => 'sun', 'Hund11204' => 'sun', 'Hund14016' => 'sun', 'Hund16464' => 'sun', 'Lalb_Chr09g0333391' => 'lal', 'Lalb_Chr11g0070461' => 'lal', 'Lalb_Chr12g0201671' => 'lal', 'Lalb_Chr13g0297161' => 'lal', 'Lj1g0002823' => 'lja', 'Lj3C1074T6' => 'lonja', 'Lj4A212T28' => 'lonja', 'Lj4g0005516' => 'lja', 'Lj4g0013705' => 'lja', 'Lj4g0027865' => 'lja', 'Lj5C92G16' => 'lonja', 'Lj5C92T12' => 'lonja', 'Lj7C596T3' => 'lonja', 'Lj9A446G59' => 'lonja', 'Lj9A482G21' => 'lonja', 'Lsat_1_v5_gn_1_28261' => 'lsa', 'Lsat_1_v5_gn_1_28281' => 'lsa', 'Lsat_1_v5_gn_1_32721' => 'lsa', 'Lsat_1_v5_gn_4_151760' => 'lsa', 'Lsat_1_v5_gn_4_2120' => 'lsa', 'Lsat_1_v5_gn_4_75761' => 'lsa', 'Lsat_1_v5_gn_5_10920' => 'lsa', 'Manes.02G099900' => 'mes', 'Manes.11G096200' => 'mes', 'Manes.12G007200' => 'mes', 'Manes.14G048300' => 'mes', 'Manes.17G114700' => 'mes', 'Mapoly0002s0070' => 'mpo', 'Mapoly0029s0099' => 'mpo', 'MBI07_g24742_MAGBIO' => 'mbi', 'MBI10_g27988_MAGBIO' => 'mbi', 'MBI11_g13057_MAGBIO' => 'mbi', 'MD02G1137200' => 'mdo', 'MD06G1137200' => 'mdo', 'MD07G1122300' => 'mdo', 'MD09G1078200' => 'mdo', 'MD13G1123700' => 'mdo', 'MD14G1151900' => 'mdo', 'MD17G1030900' => 'mdo', 'MD17G1068200' => 'mdo', 'MD17G1068600' => 'mdo', 'Medtr3g077540' => 'mtr', 'Medtr4g105530' => 'mtr', 'Medtr8g076580' => 'mtr', 'Medtr8g076590' => 'mtr', 'Medtr8g096410' => 'mtr', 'MELO3C016411.2' => 'cme', 'MELO3C017780.2' => 'cme', 'MELO3C022560.2' => 'cme', 'MELO3C026187.2' => 'cme', 'MELO3C026286.2' => 'cme', 'MELO3C032854.2' => 'cme', 'Migut.H02495' => 'egut', 'Migut.I00561' => 'egut', 'Migut.K01015' => 'egut', 'Migut.K01016' => 'egut', 'Migut.L00743' => 'egut', 'Migut.L00744' => 'egut', 'Migut.L00746' => 'egut', 'Migut.L00798' => 'egut', 'Migut.L00799' => 'egut', 'Migut.N02096' => 'egut', 'MSTRG.11259' => 'ama', 'MSTRG.23142' => 'ama', 'MSTRG.2499' => 'ama', 'Nitab4.5_0000003g0730' => 'nta', 'Nitab4.5_0000137g0020' => 'nta', 'Nitab4.5_0000721g0210' => 'nta', 'Nitab4.5_0000723g0050' => 'nta', 'Nitab4.5_0000913g0070' => 'nta', 'Nitab4.5_0001332g0040' => 'nta', 'Nitab4.5_0001771g0050' => 'nta', 'Nitab4.5_0001918g0050' => 'nta', 'Nitab4.5_0002686g0030' => 'nta', 'Nitab4.5_0003156g0020' => 'nta', 'Nitab4.5_0003383g0040' => 'nta', 'Nitab4.5_0003918g0010' => 'nta', 'Nitab4.5_0006760g0010' => 'nta', 'Nn1g05981' => 'nnu', 'Nn1g06288' => 'nnu', 'Nn3g16371' => 'nnu', 'Nn3g16786' => 'nnu', 'Nn4g22232' => 'nnu', 'Oeu005144.1' => 'oeu', 'Oeu005145.1' => 'oeu', 'Oeu011348.1' => 'oeu', 'Oeu016415.1' => 'oeu', 'Oeu023501.1' => 'oeu', 'Oeu044473.1' => 'oeu', 'Oeu048892.2' => 'oeu', 'Os01g0549200' => 'osa', 'Os02g0469300' => 'osa', 'Os04g0311100' => 'osa', 'Os06g0474900' => 'osa', 'Os10g0181700' => 'osa', 'Os11g0454800' => 'osa', 'Peaxi162Scf00037g00714' => 'pax', 'Peaxi162Scf00084g01217' => 'pax', 'Peaxi162Scf00257g00217' => 'pax', 'Peaxi162Scf00516g00215' => 'pax', 'Peaxi162Scf00689g00123' => 'pax', 'PGR044G2719' => 'pgr', 'PGR083G1360' => 'pgr', 'PGR102G2849' => 'pgr', 'PGR119G2534' => 'pgr', 'PGSC0003DMG400003538' => 'stu', 'PGSC0003DMG400028138' => 'stu', 'PGSC0003DMG400031732' => 'stu', 'PGSC0003DMG400038165' => 'stu', 'Phvul.002G284600' => 'pvu', 'Phvul.003G258200' => 'pvu', 'Phvul.009G176500' => 'pvu', 'Potri.003G167201' => 'ptr', 'Potri.005G118400' => 'ptr', 'Potri.012G089000' => 'ptr', 'Potri.012G102800' => 'ptr', 'Potri.015G079400' => 'ptr', 'Potri.015G100900' => 'ptr', 'Pp3c14_9810' => 'ppa', 'Pp3c15_10450' => 'ppa', 'Pp3c20_19150' => 'ppa', 'Pp3c23_12740' => 'ppa', 'Pp3c23_6310' => 'ppa', 'Pp3c24_3720' => 'ppa', 'Pp3c27_2580' => 'ppa', 'Pp3c9_8990' => 'ppa', 'PRCOL_00002854' => 'pco', 'Prupe.1G221200' => 'ppe', 'Prupe.3G289000' => 'ppe', 'Prupe.5G147000' => 'ppe', 'Prupe.6G157300' => 'ppe', 'Prupe.7G163400' => 'ppe', 'Psat0s2177g0040' => 'psa', 'Psat3g174760' => 'psa', 'Psat3g192160' => 'psa', 'Psat4g058520' => 'psa', 'Psat4g096840' => 'psa', 'Psat7g037320' => 'psa', 'PSO017G1274' => 'pso', 'PSO017G5166' => 'pso', 'PSO063G4558' => 'pso', 'PSO170G4458' => 'pso', 'PSO170G5005' => 'pso', 'PSO210G6156' => 'pso', 'PSO210G6635' => 'pso', 'PSO210G7397' => 'pso', 'PSO210G7700' => 'pso', 'PSO455G0035' => 'pso', 'PSO455G0180' => 'pso', 'PSO478G4515' => 'pso', 'PSO832G1305' => 'pso', 'PSO832G3489' => 'pso', 'QL02p075247' => 'qlo', 'QL03p051148' => 'qlo', 'QL05p010313' => 'qlo', 'QL06p034627' => 'qlo', 'QL10p001889' => 'qlo', 'QL10p010846' => 'qlo', 'RcHm_v2.0_Chr1g0350621' => 'rch', 'RcHm_v2.0_Chr1g0350641' => 'rch', 'RcHm_v2.0_Chr2g0092891' => 'rch', 'RcHm_v2.0_Chr2g0100251' => 'rch', 'RcHm_v2.0_Chr2g0158661' => 'rch', 'RcHm_v2.0_Chr2g0172741' => 'rch', 'RcHm_v2.0_Chr4g0429571' => 'rch', 'RcHm_v2.0_Chr5g0042471' => 'rch', 'RcHm_v2.0_Chr7g0189451' => 'rch', 'Rhsim08G0052000' => 'rsi', 'Rhsim08G0174400' => 'rsi', 'Rhsim08G0193200' => 'rsi', 'Rhsim10G0214800' => 'rsi', 'Rhsim10G0214900' => 'rsi', 'Rhsim10G0215000' => 'rsi', 'Rhsim12G0022900' => 'rsi', 'Rhsim12G0177500' => 'rsi', 'Rhsim12G0177700' => 'rsi', 'Sabra03G0122600' => 'sbr', 'Sabra05G0097400' => 'sbr', 'Sabra12G0064100' => 'sbr', 'Sabra15G0121300' => 'sbr', 'SalBow2G0642' => 'sbo', 'SalBow5G2667' => 'sbo', 'SalBow5G4873' => 'sbo', 'SalBow8G2395' => 'sbo', 'Sc03g0003290' => 'sci', 'Sc10g0010130' => 'sci', 'Sc22g0003650' => 'sci', 'Sed0001603' => 'sed', 'Sed0004259' => 'sed', 'Sed0006789' => 'sed', 'Sed0011838' => 'sed', 'Sed0012964' => 'sed', 'Sed0016383' => 'sed', 'Sed0019010' => 'sed', 'Sed0020188' => 'sed', 'SEGI_04702' => 'sgi', 'SEGI_17231' => 'sgi', 'SEGI_18877' => 'sgi', 'SEGI_25196' => 'sgi', 'SEGI_25515' => 'sgi', 'SEGI_28445' => 'sgi', 'SEGI_37452' => 'sgi', 'SGA_v2.0_scaffold188G40336' => 'sas', 'SGA_v2.0_scaffold228G43247' => 'sas', 'SGA_v2.0_scaffold280G46853' => 'sas', 'SGA_v2.0_scaffold34G13808' => 'sas', 'SGA_v2.0_scaffold40G15576' => 'sas', 'SGA_v2.0_scaffold611G53188' => 'sas', 'SGA_v2.0_scaffold78G25461' => 'sas', 'SGA_v2.0_scaffold90G27888' => 'sas', 'SHI08601' => 'shi', 'SHI08606' => 'shi', 'SHI17117' => 'shi', 'SHI17119' => 'shi', 'SMO118G0201' => 'smo', 'SMO169G0247' => 'smo', 'SMO176G0006' => 'smo', 'SMO176G0015' => 'smo', 'SMO202G0006' => 'smo', 'SMO240G0050' => 'smo', 'SMO286G0009' => 'smo', 'SMO338G0033' => 'smo', 'SMO356G0533' => 'smo', 'SMO364G0382' => 'smo', 'SMO367G0166' => 'smo', 'SMO367G1098' => 'smo', 'Solyc01g009920.3' => 'sly', 'Solyc01g099300.3' => 'sly', 'Solyc02g084700.3' => 'sly', 'Solyc03g097520.3' => 'sly', 'Solyc06g071580.3' => 'sly', 'Solyc10g081760.3' => 'sly', 'Sopen01g005480' => 'spe', 'Sopen01g042850' => 'spe', 'Sopen02g029370' => 'spe', 'Sopen03g028280' => 'spe', 'Sopen06g027870' => 'spe', 'Sopen10g032270' => 'spe', 'Sp5g18180' => 'spa', 'Sp6g12880' => 'spa', 'Sp6g30850' => 'spa', 'Sp7g22960' => 'spa', 'Sp7g34010' => 'spa', 'SpUn1326_0010' => 'spa', 'TAR371G0242' => 'tar', 'TAR622G0638' => 'tar', 'TAR628G1548' => 'tar', 'TAR629G1079' => 'tar', 'TAR629G3413' => 'tar', 'THA.LOC104804249' => 'tha', 'THA.LOC104808315' => 'tha', 'THA.LOC104809238' => 'tha', 'THA.LOC104825484' => 'tha', 'Thecc.01G025500' => 'tca', 'Thecc.03G015800' => 'tca', 'Thecc.03G018000' => 'tca', 'Thecc.03G134800' => 'tca', 'Thecc.04G014700' => 'tca', 'Thhalv10006991m.g' => 'esa', 'Thhalv10012707m.g' => 'esa', 'Thhalv10015739m.g' => 'esa', 'Thhalv10024553m.g' => 'esa', 'Thhalv10024673m.g' => 'esa', 'Thhalv10029187m.g' => 'esa', 'TPR.G12971' => 'tpr', 'TPR.G29396' => 'tpr', 'TPR.G33376' => 'tpr', 'TPR.G35508' => 'tpr', 'TPR.G35516' => 'tpr', 'TPR.G37317' => 'tpr', 'TPR.G37389' => 'tpr', 'TPR.G37523' => 'tpr', 'TPR.G559' => 'tpr', 'TWI14G0070' => 'twi', 'TWI14G0729' => 'twi', 'TWI18G0596' => 'twi', 'TWI39G0780' => 'twi', 'TWI39G0850' => 'twi', 'TWI73G1052' => 'twi', 'unitig_52.g17485' => 'ugi', 'unitig_61.g26355' => 'ugi', 'vmacro01040' => 'vma', 'vmacro16731' => 'vma', 'vmacro18270' => 'vma', 'vmacro19142' => 'vma', 'vmacro19407' => 'vma', 'vmacro19408' => 'vma', 'vmacro21899' => 'vma', 'vmacro21900' => 'vma', 'vmacro21901' => 'vma', 'VMungo0251G0490' => 'vmu', 'VMungo0251G1748' => 'vmu', 'VMungo1309G0421' => 'vmu', 'Zm00001eb086500' => 'zma', 'Zm00001eb150680' => 'zma', 'Zm00001eb162330' => 'zma', 'Zm00001eb203130' => 'zma', 'Zm00001eb369480' => 'zma', 'Zm00001eb382340' => 'zma', 'Zm00001eb416360' => 'zma' ) $gf_id = 'HOM05D000902' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000902' ) $data_identifier = 'HOM05D000902' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 13, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 10, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 6, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 9, 'hma' => (int) 12, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 4, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 6, 'ppa' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 6, 'rch' => (int) 9, 'rsi' => (int) 9, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 12, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 3, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416360' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000902', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '663', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02470' => 'bna', 'A01p16260' => 'bna', 'A02p01680' => 'bna', 'A03p16600' => 'bna', 'A03p55660' => 'bna', 'A03p64160' => 'bna', 'A03p64170' => 'bna', 'A08p31900' => 'bna', 'A09p59530' => 'bna', 'A10p08230' => 'bna', 'A10p25090' => 'bna', 'Aa31LG3G7100' => 'aar', 'Aa31LG3G7110' => 'aar', 'Aa31LG6G13160' => 'aar', 'Aa31LG7G10770' => 'aar', 'Aa31LG7G3830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2723' => 'aag', 'Actinidia08045' => 'ach', 'Actinidia08888' => 'ach', 'Actinidia18333' => 'ach', 'Actinidia19334' => 'ach', 'Actinidia25552' => 'ach', 'Actinidia26089' => 'ach', 'Actinidia30615' => 'ach', 'Actinidia30616' => 'ach', 'Actinidia33083' => 'ach', 'Actinidia35762' => 'ach', 'Ah.02g110620' => 'amhyb', 'Ah.11g046390' => 'amhyb', 'AL1G31670' => 'aly', 'AL6G23730' => 'aly', 'AL7G14740' => 'aly', 'AL7G14750' => 'aly', 'AL7G14760' => 'aly', 'AL7G28220' => 'aly', 'AL8G24940' => 'aly', 'Aqoxy3G01665' => 'aox', 'Aqoxy3G02853' => 'aox', 'Aqoxy5G01513' => 'aox', 'Aqoxy5G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8SKA4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ75LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKDA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0LJZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7REX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZP4YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWX7I5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2QKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS0L9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPCD8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q161UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC7XCF' => 'arhy', 'AT1G19100' => 'ath', 'AT4G24970' => 'ath', 'AT4G36270' => 'ath', 'AT4G36280' => 'ath', 'AT4G36290' => 'ath', 'AT5G13130' => 'ath', 'AT5G50780' => 'ath', 'ATR0582G266' => 'atr', 'ATR0661G195' => 'atr', 'ATR1152G031' => 'atr', 'Atru.chr11.2382' => 'acertr', 'Atru.chr12.2337' => 'acertr', 'Atru.chr3.744' => 'acertr', 'Atru.chr6.1870' => 'acertr', 'Atru.chr9.2515' => 'acertr', 'AUR62004120' => 'cqu', 'AUR62005667' => 'cqu', 'AUR62007634' => 'cqu', 'AUR62008186' => 'cqu', 'AUR62008187' => 'cqu', 'AUR62008188' => 'cqu', 'AUR62027954' => 'cqu', 'AUR62028766' => 'cqu', 'AUR62028767' => 'cqu', 'AUR62028768' => 'cqu', 'AUR62028886' => 'cqu', 'AUR62029563' => 'cqu', 'AUR62038832' => 'cqu', 'BcaB01g04149' => 'bca', 'BcaB03g12940' => 'bca', 'BcaB03g13090' => 'bca', 'BcaB03g14466' => 'bca', 'BcaB05g24035' => 'bca', 'BcaC01g06050' => 'bca', 'BcaC04g19148' => 'bca', 'BcaC04g20761' => 'bca', 'BcaC06g32845' => 'bca', 'BcaC07g41274' => 'bca', 'BcaC09g50827' => 'bca', 'BcaNung00741' => 'bca', 'BcaNung00742' => 'bca', 'BcaNung01859' => 'bca', 'BcaNung03985' => 'bca', 'BcaNung03989' => 'bca', 'BcaNung05661' => 'bca', 'BolC1t00257H' => 'bol', 'BolC1t01956H' => 'bol', 'BolC2t06534H' => 'bol', 'BolC3t14334H' => 'bol', 'BolC5t30451H' => 'bol', 'BolC7t45880H' => 'bol', 'BolC7t46586H' => 'bol', 'BolC8t49301H' => 'bol', 'BolC8t51837H' => 'bol', 'BolC9t56822H' => 'bol', 'BolC9t59235H' => 'bol', 'BraA01t00234Z' => 'bra', 'BraA01t01563Z' => 'bra', 'BraA02t05147Z' => 'bra', 'BraA03t10947Z' => 'bra', 'BraA03t14633Z' => 'bra', 'BraA08t35112Z' => 'bra', 'BraA09t41330Z' => 'bra', 'BraA10t44570Z' => 'bra', 'C01p02670' => 'bna', 'C01p20260' => 'bna', 'C02p05890' => 'bna', 'C03p19530' => 'bna', 'C05p17470' => 'bna', 'C07p53900' => 'bna', 'C07p61630' => 'bna', 'C08p16800' => 'bna', 'C08p42810' => 'bna', 'C09p39480' => 'bna', 'C09p63980' => 'bna', 'CAN.G1001.7' => 'can', 'CAN.G1034.55' => 'can', 'CAN.G143.7' => 'can', 'CAN.G3340.1' => 'can', 'CAN.G358.19' => 'can', 'CAN.G373.2' => 'can', 'CAN.G674.16' => 'can', 'CAN.G674.17' => 'can', 'CAN.G674.18' => 'can', 'CAN.G732.2' => 'can', 'CAN.G732.3' => 'can', 'CAN.G993.39' => 'can', 'CANSAT01G2052' => 'cansat', 'CANSAT80G0070' => 'cansat', 'CANSAT80G0483' => 'cansat', 'CANSAT80G0625' => 'cansat', 'CARHR019690' => 'chi', 'CARHR080280' => 'chi', 'CARHR152750' => 'chi', 'CARHR152760' => 'chi', 'CARHR152770' => 'chi', 'CARHR200340' => 'chi', 'CARHR232370' => 'chi', 'CARHR244670' => 'chi', 'CARHR244680' => 'chi', 'CARHR257520' => 'chi', 'Carub.0001s1872' => 'cru', 'Carub.0006s1130' => 'cru', 'Carub.0007s0396' => 'cru', 'Carub.0007s0397' => 'cru', 'Carub.0007s1608' => 'cru', 'Carub.0008s1068' => 'cru', 'Carub.0008s1077' => 'cru', 'Ca_16158_v3' => 'car', 'Ca_17571_v3' => 'car', 'Ca_21936_v3' => 'car', 'Ca_22350_v3' => 'car', 'CBR_g22445' => 'cbr', 'CBR_g26290' => 'cbr', 'Cc04_g09610' => 'ccan', 'Cc04_g12280' => 'ccan', 'Cc07_g10230' => 'ccan', 'CDE02G0093' => 'cde', 'CDE02G0701' => 'cde', 'CDE04G1050' => 'cde', 'CDE05G1833' => 'cde', 'CDE05G3058' => 'cde', 'CDE05G3380' => 'cde', 'CDE06G0536' => 'cde', 'Cfa006923' => 'cfa', 'Cfa009402' => 'cfa', 'Cfa018751' => 'cfa', 'Cfa019164' => 'cfa', 'Cfa022935' => 'cfa', 'Ciclev10019081m.g' => 'ccl', 'Ciclev10025076m.g' => 'ccl', 'Ciclev10030712m.g' => 'ccl', 'Ciclev10033760m.g' => 'ccl', 'CiPaw.05G105600' => 'cil', 'CiPaw.08G136700' => 'cil', 'CiPaw.11G003900' => 'cil', 'CiPaw.11G023700' => 'cil', 'CiPaw.12G003700' => 'cil', 'ClCG06G017100' => 'cla', 'ClCG06G018110' => 'cla', 'ClCG07G008800' => 'cla', 'ClCG07G015330' => 'cla', 'COL.COLO4_13698' => 'col', 'COL.COLO4_16659' => 'col', 'COL.COLO4_21986' => 'col', 'COL.COLO4_24049' => 'col', 'COL.COLO4_29061' => 'col', 'COL.COLO4_29075' => 'col', 'COL.COLO4_30094' => 'col', 'Cpa.g.c33689' => 'cpa', 'Cpa.g.sc108.39' => 'cpa', 'Cpa.g.sc108.41' => 'cpa', 'Cpa.g.sc1163.1' => 'cpa', 'Cpa.g.sc4.155' => 'cpa', 'Cpa.g.sc6.194' => 'cpa', 'CsaV3_1G000340' => 'csa', 'CsaV3_1G001400' => 'csa', 'CsaV3_4G002220' => 'csa', 'CsaV3_4G005370' => 'csa', 'CSS0007487' => 'camsi', 'CSS0008066' => 'camsi', 'CSS0009120' => 'camsi', 'CSS0015512' => 'camsi', 'CSS0022409' => 'camsi', 'CSS0025358' => 'camsi', 'CSS0044547' => 'camsi', 'DCAR_013057' => 'dca', 'DCAR_015058' => 'dca', 'DCAR_016027' => 'dca', 'DCAR_017327' => 'dca', 'DCAR_020743' => 'dca', 'DCAR_026157' => 'dca', 'DCAR_032339' => 'dca', 'DCAR_032340' => 'dca', 'Dinv11200' => 'din', 'Dinv11201' => 'din', 'Dinv20631' => 'din', 'Dinv23182' => 'din', 'Dinv33466' => 'din', 'Dinv33583' => 'din', 'Dinv38565' => 'din', 'Duzib068G0200' => 'dzi', 'Duzib147G0132' => 'dzi', 'Duzib147G0635' => 'dzi', 'Duzib205G1670' => 'dzi', 'Duzib251G0606' => 'dzi', 'ECA232G3336' => 'eca', 'ECA232G3763' => 'eca', 'ECA232G4845' => 'eca', 'ECA234G1607' => 'eca', 'ECA246G0932' => 'eca', 'ECA247G0781' => 'eca', 'ECA247G1932' => 'eca', 'ECA247G2079' => 'eca', 'ECA247G3338' => 'eca', 'ECA247G4115' => 'eca', 'EL10Ac3g06552' => 'bvu', 'EL10Ac5g10721' => 'bvu', 'EL10Ac5g10722' => 'bvu', 'EL10Ac5g10723' => 'bvu', 'EL10Ac5g11361' => 'bvu', 'EL10Ac6g13553' => 'bvu', 'EL10As8g23872' => 'bvu', 'Eucgr.B00250' => 'egr', 'Eucgr.B00251' => 'egr', 'Eucgr.B03533' => 'egr', 'Eucgr.I02381' => 'egr', 'Eucgr.K02700' => 'egr', 'FAN02G0174' => 'fan', 'FAN02G3146' => 'fan', 'FAN04G1672' => 'fan', 'FAN04G2273' => 'fan', 'FAN05G2791' => 'fan', 'FAN05G4035' => 'fan', 'FAN07G0834' => 'fan', 'FAN08G1198' => 'fan', 'FAN09G4182' => 'fan', 'FAN12G0496' => 'fan', 'FAN13G1027' => 'fan', 'FAN13G2951' => 'fan', 'FAN14G0705' => 'fan', 'FAN14G0720' => 'fan', 'FAN17G0201' => 'fan', 'FAN17G2665' => 'fan', 'FAN18G1456' => 'fan', 'FAN18G1525' => 'fan', 'FAN18G3500' => 'fan', 'FAN28G2670' => 'fan', 'FvH4_1g12391' => 'fve', 'FvH4_4g23220' => 'fve', 'FvH4_5g08810' => 'fve', 'FvH4_5g28960' => 'fve', 'FvH4_6g42820' => 'fve', 'FvH4_6g51110' => 'fve', 'Glyma.02G051802' => 'gma', 'Glyma.04G185300' => 'gma', 'Glyma.05G202900' => 'gma', 'Glyma.08G010300' => 'gma', 'Glyma.16G131900' => 'gma', 'Glyma.17G087900' => 'gma', 'Gohir.A07G048600' => 'ghi', 'Gohir.A11G179000' => 'ghi', 'Gohir.A12G140900' => 'ghi', 'Gohir.A12G140950' => 'ghi', 'Gohir.A12G191700' => 'ghi', 'Gohir.A13G086300' => 'ghi', 'Gohir.D07G052900' => 'ghi', 'Gohir.D11G186600' => 'ghi', 'Gohir.D12G145575' => 'ghi', 'Gohir.D12G145650' => 'ghi', 'Gohir.D12G145725' => 'ghi', 'Gohir.D12G194050' => 'ghi', 'Gohir.D13G091800' => 'ghi', 'Gorai.001G055900' => 'gra', 'Gorai.007G198400' => 'gra', 'Gorai.008G157000' => 'gra', 'Gorai.008G157100' => 'gra', 'Gorai.008G208700' => 'gra', 'Gorai.010G138700' => 'gra', 'GSVIVG01000977001' => 'vvi', 'GSVIVG01007708001' => 'vvi', 'GSVIVG01008587001' => 'vvi', 'GSVIVG01018849001' => 'vvi', 'GSVIVG01032432001' => 'vvi', 'HanXRQChr02g0034131' => 'han', 'HanXRQChr02g0035981' => 'han', 'HanXRQChr02g0035991' => 'han', 'HanXRQChr05g0155611' => 'han', 'HanXRQChr05g0155621' => 'han', 'HanXRQChr08g0236501' => 'han', 'HanXRQChr09g0261321' => 'han', 'HanXRQChr09g0272081' => 'han', 'HanXRQChr10g0310741' => 'han', 'HanXRQChr11g0325591' => 'han', 'HanXRQChr12g0385691' => 'han', 'HanXRQChr13g0387801' => 'han', 'HanXRQChr15g0463011' => 'han', 'Haze_03826' => 'cav', 'Haze_03827' => 'cav', 'Haze_07183' => 'cav', 'Haze_07537' => 'cav', 'Haze_07539' => 'cav', 'Haze_12461' => 'cav', 'Haze_16115' => 'cav', 'Haze_16808' => 'cav', 'Haze_18531' => 'cav', 'Hma1.2p1_0046F.1_g026700' => 'hma', 'Hma1.2p1_0046F.1_g026710' => 'hma', 'Hma1.2p1_0168F.1_g074340' => 'hma', 'Hma1.2p1_0266F.1_g107030' => 'hma', 'Hma1.2p1_0266F.1_g107060' => 'hma', 'Hma1.2p1_0275F.1_g110510' => 'hma', 'Hma1.2p1_0592F.1_g185490' => 'hma', 'Hma1.2p1_0592F.1_g185500' => 'hma', 'Hma1.2p1_0592F.1_g185510' => 'hma', 'Hma1.2p1_0592F.1_g185520' => 'hma', 'Hma1.2p1_0592F.1_g185530' => 'hma', 'Hma1.2p1_0818F.1_g223450' => 'hma', 'HPP92_009708' => 'vpl', 'HPP92_009793' => 'vpl', 'HPP92_009796' => 'vpl', 'HPP92_009797' => 'vpl', 'HPP92_014940' => 'vpl', 'HPP92_014988' => 'vpl', 'Hund02463' => 'sun', 'Hund02760' => 'sun', 'Hund05071' => 'sun', 'Hund10108' => 'sun', 'Hund11204' => 'sun', 'Hund14016' => 'sun', 'Hund16464' => 'sun', 'Lalb_Chr09g0333391' => 'lal', 'Lalb_Chr11g0070461' => 'lal', 'Lalb_Chr12g0201671' => 'lal', 'Lalb_Chr13g0297161' => 'lal', 'Lj1g0002823' => 'lja', 'Lj3C1074T6' => 'lonja', 'Lj4A212T28' => 'lonja', 'Lj4g0005516' => 'lja', 'Lj4g0013705' => 'lja', 'Lj4g0027865' => 'lja', 'Lj5C92G16' => 'lonja', 'Lj5C92T12' => 'lonja', 'Lj7C596T3' => 'lonja', 'Lj9A446G59' => 'lonja', 'Lj9A482G21' => 'lonja', 'Lsat_1_v5_gn_1_28261' => 'lsa', 'Lsat_1_v5_gn_1_28281' => 'lsa', 'Lsat_1_v5_gn_1_32721' => 'lsa', 'Lsat_1_v5_gn_4_151760' => 'lsa', 'Lsat_1_v5_gn_4_2120' => 'lsa', 'Lsat_1_v5_gn_4_75761' => 'lsa', 'Lsat_1_v5_gn_5_10920' => 'lsa', 'Manes.02G099900' => 'mes', 'Manes.11G096200' => 'mes', 'Manes.12G007200' => 'mes', 'Manes.14G048300' => 'mes', 'Manes.17G114700' => 'mes', 'Mapoly0002s0070' => 'mpo', 'Mapoly0029s0099' => 'mpo', 'MBI07_g24742_MAGBIO' => 'mbi', 'MBI10_g27988_MAGBIO' => 'mbi', 'MBI11_g13057_MAGBIO' => 'mbi', 'MD02G1137200' => 'mdo', 'MD06G1137200' => 'mdo', 'MD07G1122300' => 'mdo', 'MD09G1078200' => 'mdo', 'MD13G1123700' => 'mdo', 'MD14G1151900' => 'mdo', 'MD17G1030900' => 'mdo', 'MD17G1068200' => 'mdo', 'MD17G1068600' => 'mdo', 'Medtr3g077540' => 'mtr', 'Medtr4g105530' => 'mtr', 'Medtr8g076580' => 'mtr', 'Medtr8g076590' => 'mtr', 'Medtr8g096410' => 'mtr', 'MELO3C016411.2' => 'cme', 'MELO3C017780.2' => 'cme', 'MELO3C022560.2' => 'cme', 'MELO3C026187.2' => 'cme', 'MELO3C026286.2' => 'cme', 'MELO3C032854.2' => 'cme', 'Migut.H02495' => 'egut', 'Migut.I00561' => 'egut', 'Migut.K01015' => 'egut', 'Migut.K01016' => 'egut', 'Migut.L00743' => 'egut', 'Migut.L00744' => 'egut', 'Migut.L00746' => 'egut', 'Migut.L00798' => 'egut', 'Migut.L00799' => 'egut', 'Migut.N02096' => 'egut', 'MSTRG.11259' => 'ama', 'MSTRG.23142' => 'ama', 'MSTRG.2499' => 'ama', 'Nitab4.5_0000003g0730' => 'nta', 'Nitab4.5_0000137g0020' => 'nta', 'Nitab4.5_0000721g0210' => 'nta', 'Nitab4.5_0000723g0050' => 'nta', 'Nitab4.5_0000913g0070' => 'nta', 'Nitab4.5_0001332g0040' => 'nta', 'Nitab4.5_0001771g0050' => 'nta', 'Nitab4.5_0001918g0050' => 'nta', 'Nitab4.5_0002686g0030' => 'nta', 'Nitab4.5_0003156g0020' => 'nta', 'Nitab4.5_0003383g0040' => 'nta', 'Nitab4.5_0003918g0010' => 'nta', 'Nitab4.5_0006760g0010' => 'nta', 'Nn1g05981' => 'nnu', 'Nn1g06288' => 'nnu', 'Nn3g16371' => 'nnu', 'Nn3g16786' => 'nnu', 'Nn4g22232' => 'nnu', 'Oeu005144.1' => 'oeu', 'Oeu005145.1' => 'oeu', 'Oeu011348.1' => 'oeu', 'Oeu016415.1' => 'oeu', 'Oeu023501.1' => 'oeu', 'Oeu044473.1' => 'oeu', 'Oeu048892.2' => 'oeu', 'Os01g0549200' => 'osa', 'Os02g0469300' => 'osa', 'Os04g0311100' => 'osa', 'Os06g0474900' => 'osa', 'Os10g0181700' => 'osa', 'Os11g0454800' => 'osa', 'Peaxi162Scf00037g00714' => 'pax', 'Peaxi162Scf00084g01217' => 'pax', 'Peaxi162Scf00257g00217' => 'pax', 'Peaxi162Scf00516g00215' => 'pax', 'Peaxi162Scf00689g00123' => 'pax', 'PGR044G2719' => 'pgr', 'PGR083G1360' => 'pgr', 'PGR102G2849' => 'pgr', 'PGR119G2534' => 'pgr', 'PGSC0003DMG400003538' => 'stu', 'PGSC0003DMG400028138' => 'stu', 'PGSC0003DMG400031732' => 'stu', 'PGSC0003DMG400038165' => 'stu', 'Phvul.002G284600' => 'pvu', 'Phvul.003G258200' => 'pvu', 'Phvul.009G176500' => 'pvu', 'Potri.003G167201' => 'ptr', 'Potri.005G118400' => 'ptr', 'Potri.012G089000' => 'ptr', 'Potri.012G102800' => 'ptr', 'Potri.015G079400' => 'ptr', 'Potri.015G100900' => 'ptr', 'Pp3c14_9810' => 'ppa', 'Pp3c15_10450' => 'ppa', 'Pp3c20_19150' => 'ppa', 'Pp3c23_12740' => 'ppa', 'Pp3c23_6310' => 'ppa', 'Pp3c24_3720' => 'ppa', 'Pp3c27_2580' => 'ppa', 'Pp3c9_8990' => 'ppa', 'PRCOL_00002854' => 'pco', 'Prupe.1G221200' => 'ppe', 'Prupe.3G289000' => 'ppe', 'Prupe.5G147000' => 'ppe', 'Prupe.6G157300' => 'ppe', 'Prupe.7G163400' => 'ppe', 'Psat0s2177g0040' => 'psa', 'Psat3g174760' => 'psa', 'Psat3g192160' => 'psa', 'Psat4g058520' => 'psa', 'Psat4g096840' => 'psa', 'Psat7g037320' => 'psa', 'PSO017G1274' => 'pso', 'PSO017G5166' => 'pso', 'PSO063G4558' => 'pso', 'PSO170G4458' => 'pso', 'PSO170G5005' => 'pso', 'PSO210G6156' => 'pso', 'PSO210G6635' => 'pso', 'PSO210G7397' => 'pso', 'PSO210G7700' => 'pso', 'PSO455G0035' => 'pso', 'PSO455G0180' => 'pso', 'PSO478G4515' => 'pso', 'PSO832G1305' => 'pso', 'PSO832G3489' => 'pso', 'QL02p075247' => 'qlo', 'QL03p051148' => 'qlo', 'QL05p010313' => 'qlo', 'QL06p034627' => 'qlo', 'QL10p001889' => 'qlo', 'QL10p010846' => 'qlo', 'RcHm_v2.0_Chr1g0350621' => 'rch', 'RcHm_v2.0_Chr1g0350641' => 'rch', 'RcHm_v2.0_Chr2g0092891' => 'rch', 'RcHm_v2.0_Chr2g0100251' => 'rch', 'RcHm_v2.0_Chr2g0158661' => 'rch', 'RcHm_v2.0_Chr2g0172741' => 'rch', 'RcHm_v2.0_Chr4g0429571' => 'rch', 'RcHm_v2.0_Chr5g0042471' => 'rch', 'RcHm_v2.0_Chr7g0189451' => 'rch', 'Rhsim08G0052000' => 'rsi', 'Rhsim08G0174400' => 'rsi', 'Rhsim08G0193200' => 'rsi', 'Rhsim10G0214800' => 'rsi', 'Rhsim10G0214900' => 'rsi', 'Rhsim10G0215000' => 'rsi', 'Rhsim12G0022900' => 'rsi', 'Rhsim12G0177500' => 'rsi', 'Rhsim12G0177700' => 'rsi', 'Sabra03G0122600' => 'sbr', 'Sabra05G0097400' => 'sbr', 'Sabra12G0064100' => 'sbr', 'Sabra15G0121300' => 'sbr', 'SalBow2G0642' => 'sbo', 'SalBow5G2667' => 'sbo', 'SalBow5G4873' => 'sbo', 'SalBow8G2395' => 'sbo', 'Sc03g0003290' => 'sci', 'Sc10g0010130' => 'sci', 'Sc22g0003650' => 'sci', 'Sed0001603' => 'sed', 'Sed0004259' => 'sed', 'Sed0006789' => 'sed', 'Sed0011838' => 'sed', 'Sed0012964' => 'sed', 'Sed0016383' => 'sed', 'Sed0019010' => 'sed', 'Sed0020188' => 'sed', 'SEGI_04702' => 'sgi', 'SEGI_17231' => 'sgi', 'SEGI_18877' => 'sgi', 'SEGI_25196' => 'sgi', 'SEGI_25515' => 'sgi', 'SEGI_28445' => 'sgi', 'SEGI_37452' => 'sgi', 'SGA_v2.0_scaffold188G40336' => 'sas', 'SGA_v2.0_scaffold228G43247' => 'sas', 'SGA_v2.0_scaffold280G46853' => 'sas', 'SGA_v2.0_scaffold34G13808' => 'sas', 'SGA_v2.0_scaffold40G15576' => 'sas', 'SGA_v2.0_scaffold611G53188' => 'sas', 'SGA_v2.0_scaffold78G25461' => 'sas', 'SGA_v2.0_scaffold90G27888' => 'sas', 'SHI08601' => 'shi', 'SHI08606' => 'shi', 'SHI17117' => 'shi', 'SHI17119' => 'shi', 'SMO118G0201' => 'smo', 'SMO169G0247' => 'smo', 'SMO176G0006' => 'smo', 'SMO176G0015' => 'smo', 'SMO202G0006' => 'smo', 'SMO240G0050' => 'smo', 'SMO286G0009' => 'smo', 'SMO338G0033' => 'smo', 'SMO356G0533' => 'smo', 'SMO364G0382' => 'smo', 'SMO367G0166' => 'smo', 'SMO367G1098' => 'smo', 'Solyc01g009920.3' => 'sly', 'Solyc01g099300.3' => 'sly', 'Solyc02g084700.3' => 'sly', 'Solyc03g097520.3' => 'sly', 'Solyc06g071580.3' => 'sly', 'Solyc10g081760.3' => 'sly', 'Sopen01g005480' => 'spe', 'Sopen01g042850' => 'spe', 'Sopen02g029370' => 'spe', 'Sopen03g028280' => 'spe', 'Sopen06g027870' => 'spe', 'Sopen10g032270' => 'spe', 'Sp5g18180' => 'spa', 'Sp6g12880' => 'spa', 'Sp6g30850' => 'spa', 'Sp7g22960' => 'spa', 'Sp7g34010' => 'spa', 'SpUn1326_0010' => 'spa', 'TAR371G0242' => 'tar', 'TAR622G0638' => 'tar', 'TAR628G1548' => 'tar', 'TAR629G1079' => 'tar', 'TAR629G3413' => 'tar', 'THA.LOC104804249' => 'tha', 'THA.LOC104808315' => 'tha', 'THA.LOC104809238' => 'tha', 'THA.LOC104825484' => 'tha', 'Thecc.01G025500' => 'tca', 'Thecc.03G015800' => 'tca', 'Thecc.03G018000' => 'tca', 'Thecc.03G134800' => 'tca', 'Thecc.04G014700' => 'tca', 'Thhalv10006991m.g' => 'esa', 'Thhalv10012707m.g' => 'esa', 'Thhalv10015739m.g' => 'esa', 'Thhalv10024553m.g' => 'esa', 'Thhalv10024673m.g' => 'esa', 'Thhalv10029187m.g' => 'esa', 'TPR.G12971' => 'tpr', 'TPR.G29396' => 'tpr', 'TPR.G33376' => 'tpr', 'TPR.G35508' => 'tpr', 'TPR.G35516' => 'tpr', 'TPR.G37317' => 'tpr', 'TPR.G37389' => 'tpr', 'TPR.G37523' => 'tpr', 'TPR.G559' => 'tpr', 'TWI14G0070' => 'twi', 'TWI14G0729' => 'twi', 'TWI18G0596' => 'twi', 'TWI39G0780' => 'twi', 'TWI39G0850' => 'twi', 'TWI73G1052' => 'twi', 'unitig_52.g17485' => 'ugi', 'unitig_61.g26355' => 'ugi', 'vmacro01040' => 'vma', 'vmacro16731' => 'vma', 'vmacro18270' => 'vma', 'vmacro19142' => 'vma', 'vmacro19407' => 'vma', 'vmacro19408' => 'vma', 'vmacro21899' => 'vma', 'vmacro21900' => 'vma', 'vmacro21901' => 'vma', 'VMungo0251G0490' => 'vmu', 'VMungo0251G1748' => 'vmu', 'VMungo1309G0421' => 'vmu', 'Zm00001eb086500' => 'zma', 'Zm00001eb150680' => 'zma', 'Zm00001eb162330' => 'zma', 'Zm00001eb203130' => 'zma', 'Zm00001eb369480' => 'zma', 'Zm00001eb382340' => 'zma', 'Zm00001eb416360' => 'zma' ), 'gf_id' => 'HOM05D000902', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000902' ), 'data_identifier' => 'HOM05D000902', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000902', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '663', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02470' => 'bna', 'A01p16260' => 'bna', 'A02p01680' => 'bna', 'A03p16600' => 'bna', 'A03p55660' => 'bna', 'A03p64160' => 'bna', 'A03p64170' => 'bna', 'A08p31900' => 'bna', 'A09p59530' => 'bna', 'A10p08230' => 'bna', 'A10p25090' => 'bna', 'Aa31LG3G7100' => 'aar', 'Aa31LG3G7110' => 'aar', 'Aa31LG6G13160' => 'aar', 'Aa31LG7G10770' => 'aar', 'Aa31LG7G3830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2723' => 'aag', 'Actinidia08045' => 'ach', 'Actinidia08888' => 'ach', 'Actinidia18333' => 'ach', 'Actinidia19334' => 'ach', 'Actinidia25552' => 'ach', 'Actinidia26089' => 'ach', 'Actinidia30615' => 'ach', 'Actinidia30616' => 'ach', 'Actinidia33083' => 'ach', 'Actinidia35762' => 'ach', 'Ah.02g110620' => 'amhyb', 'Ah.11g046390' => 'amhyb', 'AL1G31670' => 'aly', 'AL6G23730' => 'aly', 'AL7G14740' => 'aly', 'AL7G14750' => 'aly', 'AL7G14760' => 'aly', 'AL7G28220' => 'aly', 'AL8G24940' => 'aly', 'Aqoxy3G01665' => 'aox', 'Aqoxy3G02853' => 'aox', 'Aqoxy5G01513' => 'aox', 'Aqoxy5G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8SKA4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ75LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKDA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0LJZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7REX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZP4YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWX7I5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2QKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS0L9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPCD8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q161UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC7XCF' => 'arhy', 'AT1G19100' => 'ath', 'AT4G24970' => 'ath', 'AT4G36270' => 'ath', 'AT4G36280' => 'ath', 'AT4G36290' => 'ath', 'AT5G13130' => 'ath', 'AT5G50780' => 'ath', 'ATR0582G266' => 'atr', 'ATR0661G195' => 'atr', 'ATR1152G031' => 'atr', 'Atru.chr11.2382' => 'acertr', 'Atru.chr12.2337' => 'acertr', 'Atru.chr3.744' => 'acertr', 'Atru.chr6.1870' => 'acertr', 'Atru.chr9.2515' => 'acertr', 'AUR62004120' => 'cqu', 'AUR62005667' => 'cqu', 'AUR62007634' => 'cqu', 'AUR62008186' => 'cqu', 'AUR62008187' => 'cqu', 'AUR62008188' => 'cqu', 'AUR62027954' => 'cqu', 'AUR62028766' => 'cqu', 'AUR62028767' => 'cqu', 'AUR62028768' => 'cqu', 'AUR62028886' => 'cqu', 'AUR62029563' => 'cqu', 'AUR62038832' => 'cqu', 'BcaB01g04149' => 'bca', 'BcaB03g12940' => 'bca', 'BcaB03g13090' => 'bca', 'BcaB03g14466' => 'bca', 'BcaB05g24035' => 'bca', 'BcaC01g06050' => 'bca', 'BcaC04g19148' => 'bca', 'BcaC04g20761' => 'bca', 'BcaC06g32845' => 'bca', 'BcaC07g41274' => 'bca', 'BcaC09g50827' => 'bca', 'BcaNung00741' => 'bca', 'BcaNung00742' => 'bca', 'BcaNung01859' => 'bca', 'BcaNung03985' => 'bca', 'BcaNung03989' => 'bca', 'BcaNung05661' => 'bca', 'BolC1t00257H' => 'bol', 'BolC1t01956H' => 'bol', 'BolC2t06534H' => 'bol', 'BolC3t14334H' => 'bol', 'BolC5t30451H' => 'bol', 'BolC7t45880H' => 'bol', 'BolC7t46586H' => 'bol', 'BolC8t49301H' => 'bol', 'BolC8t51837H' => 'bol', 'BolC9t56822H' => 'bol', 'BolC9t59235H' => 'bol', 'BraA01t00234Z' => 'bra', 'BraA01t01563Z' => 'bra', 'BraA02t05147Z' => 'bra', 'BraA03t10947Z' => 'bra', 'BraA03t14633Z' => 'bra', 'BraA08t35112Z' => 'bra', 'BraA09t41330Z' => 'bra', 'BraA10t44570Z' => 'bra', 'C01p02670' => 'bna', 'C01p20260' => 'bna', 'C02p05890' => 'bna', 'C03p19530' => 'bna', 'C05p17470' => 'bna', 'C07p53900' => 'bna', 'C07p61630' => 'bna', 'C08p16800' => 'bna', 'C08p42810' => 'bna', 'C09p39480' => 'bna', 'C09p63980' => 'bna', 'CAN.G1001.7' => 'can', 'CAN.G1034.55' => 'can', 'CAN.G143.7' => 'can', 'CAN.G3340.1' => 'can', 'CAN.G358.19' => 'can', 'CAN.G373.2' => 'can', 'CAN.G674.16' => 'can', 'CAN.G674.17' => 'can', 'CAN.G674.18' => 'can', 'CAN.G732.2' => 'can', 'CAN.G732.3' => 'can', 'CAN.G993.39' => 'can', 'CANSAT01G2052' => 'cansat', 'CANSAT80G0070' => 'cansat', 'CANSAT80G0483' => 'cansat', 'CANSAT80G0625' => 'cansat', 'CARHR019690' => 'chi', 'CARHR080280' => 'chi', 'CARHR152750' => 'chi', 'CARHR152760' => 'chi', 'CARHR152770' => 'chi', 'CARHR200340' => 'chi', 'CARHR232370' => 'chi', 'CARHR244670' => 'chi', 'CARHR244680' => 'chi', 'CARHR257520' => 'chi', 'Carub.0001s1872' => 'cru', 'Carub.0006s1130' => 'cru', 'Carub.0007s0396' => 'cru', 'Carub.0007s0397' => 'cru', 'Carub.0007s1608' => 'cru', 'Carub.0008s1068' => 'cru', 'Carub.0008s1077' => 'cru', 'Ca_16158_v3' => 'car', 'Ca_17571_v3' => 'car', 'Ca_21936_v3' => 'car', 'Ca_22350_v3' => 'car', 'CBR_g22445' => 'cbr', 'CBR_g26290' => 'cbr', 'Cc04_g09610' => 'ccan', 'Cc04_g12280' => 'ccan', 'Cc07_g10230' => 'ccan', 'CDE02G0093' => 'cde', 'CDE02G0701' => 'cde', 'CDE04G1050' => 'cde', 'CDE05G1833' => 'cde', 'CDE05G3058' => 'cde', 'CDE05G3380' => 'cde', 'CDE06G0536' => 'cde', 'Cfa006923' => 'cfa', 'Cfa009402' => 'cfa', 'Cfa018751' => 'cfa', 'Cfa019164' => 'cfa', 'Cfa022935' => 'cfa', 'Ciclev10019081m.g' => 'ccl', 'Ciclev10025076m.g' => 'ccl', 'Ciclev10030712m.g' => 'ccl', 'Ciclev10033760m.g' => 'ccl', 'CiPaw.05G105600' => 'cil', 'CiPaw.08G136700' => 'cil', 'CiPaw.11G003900' => 'cil', 'CiPaw.11G023700' => 'cil', 'CiPaw.12G003700' => 'cil', 'ClCG06G017100' => 'cla', 'ClCG06G018110' => 'cla', 'ClCG07G008800' => 'cla', 'ClCG07G015330' => 'cla', 'COL.COLO4_13698' => 'col', 'COL.COLO4_16659' => 'col', 'COL.COLO4_21986' => 'col', 'COL.COLO4_24049' => 'col', 'COL.COLO4_29061' => 'col', 'COL.COLO4_29075' => 'col', 'COL.COLO4_30094' => 'col', 'Cpa.g.c33689' => 'cpa', 'Cpa.g.sc108.39' => 'cpa', 'Cpa.g.sc108.41' => 'cpa', 'Cpa.g.sc1163.1' => 'cpa', 'Cpa.g.sc4.155' => 'cpa', 'Cpa.g.sc6.194' => 'cpa', 'CsaV3_1G000340' => 'csa', 'CsaV3_1G001400' => 'csa', 'CsaV3_4G002220' => 'csa', 'CsaV3_4G005370' => 'csa', 'CSS0007487' => 'camsi', 'CSS0008066' => 'camsi', 'CSS0009120' => 'camsi', 'CSS0015512' => 'camsi', 'CSS0022409' => 'camsi', 'CSS0025358' => 'camsi', 'CSS0044547' => 'camsi', 'DCAR_013057' => 'dca', 'DCAR_015058' => 'dca', 'DCAR_016027' => 'dca', 'DCAR_017327' => 'dca', 'DCAR_020743' => 'dca', 'DCAR_026157' => 'dca', 'DCAR_032339' => 'dca', 'DCAR_032340' => 'dca', 'Dinv11200' => 'din', 'Dinv11201' => 'din', 'Dinv20631' => 'din', 'Dinv23182' => 'din', 'Dinv33466' => 'din', 'Dinv33583' => 'din', 'Dinv38565' => 'din', 'Duzib068G0200' => 'dzi', 'Duzib147G0132' => 'dzi', 'Duzib147G0635' => 'dzi', 'Duzib205G1670' => 'dzi', 'Duzib251G0606' => 'dzi', 'ECA232G3336' => 'eca', 'ECA232G3763' => 'eca', 'ECA232G4845' => 'eca', 'ECA234G1607' => 'eca', 'ECA246G0932' => 'eca', 'ECA247G0781' => 'eca', 'ECA247G1932' => 'eca', 'ECA247G2079' => 'eca', 'ECA247G3338' => 'eca', 'ECA247G4115' => 'eca', 'EL10Ac3g06552' => 'bvu', 'EL10Ac5g10721' => 'bvu', 'EL10Ac5g10722' => 'bvu', 'EL10Ac5g10723' => 'bvu', 'EL10Ac5g11361' => 'bvu', 'EL10Ac6g13553' => 'bvu', 'EL10As8g23872' => 'bvu', 'Eucgr.B00250' => 'egr', 'Eucgr.B00251' => 'egr', 'Eucgr.B03533' => 'egr', 'Eucgr.I02381' => 'egr', 'Eucgr.K02700' => 'egr', 'FAN02G0174' => 'fan', 'FAN02G3146' => 'fan', 'FAN04G1672' => 'fan', 'FAN04G2273' => 'fan', 'FAN05G2791' => 'fan', 'FAN05G4035' => 'fan', 'FAN07G0834' => 'fan', 'FAN08G1198' => 'fan', 'FAN09G4182' => 'fan', 'FAN12G0496' => 'fan', 'FAN13G1027' => 'fan', 'FAN13G2951' => 'fan', 'FAN14G0705' => 'fan', 'FAN14G0720' => 'fan', 'FAN17G0201' => 'fan', 'FAN17G2665' => 'fan', 'FAN18G1456' => 'fan', 'FAN18G1525' => 'fan', 'FAN18G3500' => 'fan', 'FAN28G2670' => 'fan', 'FvH4_1g12391' => 'fve', 'FvH4_4g23220' => 'fve', 'FvH4_5g08810' => 'fve', 'FvH4_5g28960' => 'fve', 'FvH4_6g42820' => 'fve', 'FvH4_6g51110' => 'fve', 'Glyma.02G051802' => 'gma', 'Glyma.04G185300' => 'gma', 'Glyma.05G202900' => 'gma', 'Glyma.08G010300' => 'gma', 'Glyma.16G131900' => 'gma', 'Glyma.17G087900' => 'gma', 'Gohir.A07G048600' => 'ghi', 'Gohir.A11G179000' => 'ghi', 'Gohir.A12G140900' => 'ghi', 'Gohir.A12G140950' => 'ghi', 'Gohir.A12G191700' => 'ghi', 'Gohir.A13G086300' => 'ghi', 'Gohir.D07G052900' => 'ghi', 'Gohir.D11G186600' => 'ghi', 'Gohir.D12G145575' => 'ghi', 'Gohir.D12G145650' => 'ghi', 'Gohir.D12G145725' => 'ghi', 'Gohir.D12G194050' => 'ghi', 'Gohir.D13G091800' => 'ghi', 'Gorai.001G055900' => 'gra', 'Gorai.007G198400' => 'gra', 'Gorai.008G157000' => 'gra', 'Gorai.008G157100' => 'gra', 'Gorai.008G208700' => 'gra', 'Gorai.010G138700' => 'gra', 'GSVIVG01000977001' => 'vvi', 'GSVIVG01007708001' => 'vvi', 'GSVIVG01008587001' => 'vvi', 'GSVIVG01018849001' => 'vvi', 'GSVIVG01032432001' => 'vvi', 'HanXRQChr02g0034131' => 'han', 'HanXRQChr02g0035981' => 'han', 'HanXRQChr02g0035991' => 'han', 'HanXRQChr05g0155611' => 'han', 'HanXRQChr05g0155621' => 'han', 'HanXRQChr08g0236501' => 'han', 'HanXRQChr09g0261321' => 'han', 'HanXRQChr09g0272081' => 'han', 'HanXRQChr10g0310741' => 'han', 'HanXRQChr11g0325591' => 'han', 'HanXRQChr12g0385691' => 'han', 'HanXRQChr13g0387801' => 'han', 'HanXRQChr15g0463011' => 'han', 'Haze_03826' => 'cav', 'Haze_03827' => 'cav', 'Haze_07183' => 'cav', 'Haze_07537' => 'cav', 'Haze_07539' => 'cav', 'Haze_12461' => 'cav', 'Haze_16115' => 'cav', 'Haze_16808' => 'cav', 'Haze_18531' => 'cav', 'Hma1.2p1_0046F.1_g026700' => 'hma', 'Hma1.2p1_0046F.1_g026710' => 'hma', 'Hma1.2p1_0168F.1_g074340' => 'hma', 'Hma1.2p1_0266F.1_g107030' => 'hma', 'Hma1.2p1_0266F.1_g107060' => 'hma', 'Hma1.2p1_0275F.1_g110510' => 'hma', 'Hma1.2p1_0592F.1_g185490' => 'hma', 'Hma1.2p1_0592F.1_g185500' => 'hma', 'Hma1.2p1_0592F.1_g185510' => 'hma', 'Hma1.2p1_0592F.1_g185520' => 'hma', 'Hma1.2p1_0592F.1_g185530' => 'hma', 'Hma1.2p1_0818F.1_g223450' => 'hma', 'HPP92_009708' => 'vpl', 'HPP92_009793' => 'vpl', 'HPP92_009796' => 'vpl', 'HPP92_009797' => 'vpl', 'HPP92_014940' => 'vpl', 'HPP92_014988' => 'vpl', 'Hund02463' => 'sun', 'Hund02760' => 'sun', 'Hund05071' => 'sun', 'Hund10108' => 'sun', 'Hund11204' => 'sun', 'Hund14016' => 'sun', 'Hund16464' => 'sun', 'Lalb_Chr09g0333391' => 'lal', 'Lalb_Chr11g0070461' => 'lal', 'Lalb_Chr12g0201671' => 'lal', 'Lalb_Chr13g0297161' => 'lal', 'Lj1g0002823' => 'lja', 'Lj3C1074T6' => 'lonja', 'Lj4A212T28' => 'lonja', 'Lj4g0005516' => 'lja', 'Lj4g0013705' => 'lja', 'Lj4g0027865' => 'lja', 'Lj5C92G16' => 'lonja', 'Lj5C92T12' => 'lonja', 'Lj7C596T3' => 'lonja', 'Lj9A446G59' => 'lonja', 'Lj9A482G21' => 'lonja', 'Lsat_1_v5_gn_1_28261' => 'lsa', 'Lsat_1_v5_gn_1_28281' => 'lsa', 'Lsat_1_v5_gn_1_32721' => 'lsa', 'Lsat_1_v5_gn_4_151760' => 'lsa', 'Lsat_1_v5_gn_4_2120' => 'lsa', 'Lsat_1_v5_gn_4_75761' => 'lsa', 'Lsat_1_v5_gn_5_10920' => 'lsa', 'Manes.02G099900' => 'mes', 'Manes.11G096200' => 'mes', 'Manes.12G007200' => 'mes', 'Manes.14G048300' => 'mes', 'Manes.17G114700' => 'mes', 'Mapoly0002s0070' => 'mpo', 'Mapoly0029s0099' => 'mpo', 'MBI07_g24742_MAGBIO' => 'mbi', 'MBI10_g27988_MAGBIO' => 'mbi', 'MBI11_g13057_MAGBIO' => 'mbi', 'MD02G1137200' => 'mdo', 'MD06G1137200' => 'mdo', 'MD07G1122300' => 'mdo', 'MD09G1078200' => 'mdo', 'MD13G1123700' => 'mdo', 'MD14G1151900' => 'mdo', 'MD17G1030900' => 'mdo', 'MD17G1068200' => 'mdo', 'MD17G1068600' => 'mdo', 'Medtr3g077540' => 'mtr', 'Medtr4g105530' => 'mtr', 'Medtr8g076580' => 'mtr', 'Medtr8g076590' => 'mtr', 'Medtr8g096410' => 'mtr', 'MELO3C016411.2' => 'cme', 'MELO3C017780.2' => 'cme', 'MELO3C022560.2' => 'cme', 'MELO3C026187.2' => 'cme', 'MELO3C026286.2' => 'cme', 'MELO3C032854.2' => 'cme', 'Migut.H02495' => 'egut', 'Migut.I00561' => 'egut', 'Migut.K01015' => 'egut', 'Migut.K01016' => 'egut', 'Migut.L00743' => 'egut', 'Migut.L00744' => 'egut', 'Migut.L00746' => 'egut', 'Migut.L00798' => 'egut', 'Migut.L00799' => 'egut', 'Migut.N02096' => 'egut', 'MSTRG.11259' => 'ama', 'MSTRG.23142' => 'ama', 'MSTRG.2499' => 'ama', 'Nitab4.5_0000003g0730' => 'nta', 'Nitab4.5_0000137g0020' => 'nta', 'Nitab4.5_0000721g0210' => 'nta', 'Nitab4.5_0000723g0050' => 'nta', 'Nitab4.5_0000913g0070' => 'nta', 'Nitab4.5_0001332g0040' => 'nta', 'Nitab4.5_0001771g0050' => 'nta', 'Nitab4.5_0001918g0050' => 'nta', 'Nitab4.5_0002686g0030' => 'nta', 'Nitab4.5_0003156g0020' => 'nta', 'Nitab4.5_0003383g0040' => 'nta', 'Nitab4.5_0003918g0010' => 'nta', 'Nitab4.5_0006760g0010' => 'nta', 'Nn1g05981' => 'nnu', 'Nn1g06288' => 'nnu', 'Nn3g16371' => 'nnu', 'Nn3g16786' => 'nnu', 'Nn4g22232' => 'nnu', 'Oeu005144.1' => 'oeu', 'Oeu005145.1' => 'oeu', 'Oeu011348.1' => 'oeu', 'Oeu016415.1' => 'oeu', 'Oeu023501.1' => 'oeu', 'Oeu044473.1' => 'oeu', 'Oeu048892.2' => 'oeu', 'Os01g0549200' => 'osa', 'Os02g0469300' => 'osa', 'Os04g0311100' => 'osa', 'Os06g0474900' => 'osa', 'Os10g0181700' => 'osa', 'Os11g0454800' => 'osa', 'Peaxi162Scf00037g00714' => 'pax', 'Peaxi162Scf00084g01217' => 'pax', 'Peaxi162Scf00257g00217' => 'pax', 'Peaxi162Scf00516g00215' => 'pax', 'Peaxi162Scf00689g00123' => 'pax', 'PGR044G2719' => 'pgr', 'PGR083G1360' => 'pgr', 'PGR102G2849' => 'pgr', 'PGR119G2534' => 'pgr', 'PGSC0003DMG400003538' => 'stu', 'PGSC0003DMG400028138' => 'stu', 'PGSC0003DMG400031732' => 'stu', 'PGSC0003DMG400038165' => 'stu', 'Phvul.002G284600' => 'pvu', 'Phvul.003G258200' => 'pvu', 'Phvul.009G176500' => 'pvu', 'Potri.003G167201' => 'ptr', 'Potri.005G118400' => 'ptr', 'Potri.012G089000' => 'ptr', 'Potri.012G102800' => 'ptr', 'Potri.015G079400' => 'ptr', 'Potri.015G100900' => 'ptr', 'Pp3c14_9810' => 'ppa', 'Pp3c15_10450' => 'ppa', 'Pp3c20_19150' => 'ppa', 'Pp3c23_12740' => 'ppa', 'Pp3c23_6310' => 'ppa', 'Pp3c24_3720' => 'ppa', 'Pp3c27_2580' => 'ppa', 'Pp3c9_8990' => 'ppa', 'PRCOL_00002854' => 'pco', 'Prupe.1G221200' => 'ppe', 'Prupe.3G289000' => 'ppe', 'Prupe.5G147000' => 'ppe', 'Prupe.6G157300' => 'ppe', 'Prupe.7G163400' => 'ppe', 'Psat0s2177g0040' => 'psa', 'Psat3g174760' => 'psa', 'Psat3g192160' => 'psa', 'Psat4g058520' => 'psa', 'Psat4g096840' => 'psa', 'Psat7g037320' => 'psa', 'PSO017G1274' => 'pso', 'PSO017G5166' => 'pso', 'PSO063G4558' => 'pso', 'PSO170G4458' => 'pso', 'PSO170G5005' => 'pso', 'PSO210G6156' => 'pso', 'PSO210G6635' => 'pso', 'PSO210G7397' => 'pso', 'PSO210G7700' => 'pso', 'PSO455G0035' => 'pso', 'PSO455G0180' => 'pso', 'PSO478G4515' => 'pso', 'PSO832G1305' => 'pso', 'PSO832G3489' => 'pso', 'QL02p075247' => 'qlo', 'QL03p051148' => 'qlo', 'QL05p010313' => 'qlo', 'QL06p034627' => 'qlo', 'QL10p001889' => 'qlo', 'QL10p010846' => 'qlo', 'RcHm_v2.0_Chr1g0350621' => 'rch', 'RcHm_v2.0_Chr1g0350641' => 'rch', 'RcHm_v2.0_Chr2g0092891' => 'rch', 'RcHm_v2.0_Chr2g0100251' => 'rch', 'RcHm_v2.0_Chr2g0158661' => 'rch', 'RcHm_v2.0_Chr2g0172741' => 'rch', 'RcHm_v2.0_Chr4g0429571' => 'rch', 'RcHm_v2.0_Chr5g0042471' => 'rch', 'RcHm_v2.0_Chr7g0189451' => 'rch', 'Rhsim08G0052000' => 'rsi', 'Rhsim08G0174400' => 'rsi', 'Rhsim08G0193200' => 'rsi', 'Rhsim10G0214800' => 'rsi', 'Rhsim10G0214900' => 'rsi', 'Rhsim10G0215000' => 'rsi', 'Rhsim12G0022900' => 'rsi', 'Rhsim12G0177500' => 'rsi', 'Rhsim12G0177700' => 'rsi', 'Sabra03G0122600' => 'sbr', 'Sabra05G0097400' => 'sbr', 'Sabra12G0064100' => 'sbr', 'Sabra15G0121300' => 'sbr', 'SalBow2G0642' => 'sbo', 'SalBow5G2667' => 'sbo', 'SalBow5G4873' => 'sbo', 'SalBow8G2395' => 'sbo', 'Sc03g0003290' => 'sci', 'Sc10g0010130' => 'sci', 'Sc22g0003650' => 'sci', 'Sed0001603' => 'sed', 'Sed0004259' => 'sed', 'Sed0006789' => 'sed', 'Sed0011838' => 'sed', 'Sed0012964' => 'sed', 'Sed0016383' => 'sed', 'Sed0019010' => 'sed', 'Sed0020188' => 'sed', 'SEGI_04702' => 'sgi', 'SEGI_17231' => 'sgi', 'SEGI_18877' => 'sgi', 'SEGI_25196' => 'sgi', 'SEGI_25515' => 'sgi', 'SEGI_28445' => 'sgi', 'SEGI_37452' => 'sgi', 'SGA_v2.0_scaffold188G40336' => 'sas', 'SGA_v2.0_scaffold228G43247' => 'sas', 'SGA_v2.0_scaffold280G46853' => 'sas', 'SGA_v2.0_scaffold34G13808' => 'sas', 'SGA_v2.0_scaffold40G15576' => 'sas', 'SGA_v2.0_scaffold611G53188' => 'sas', 'SGA_v2.0_scaffold78G25461' => 'sas', 'SGA_v2.0_scaffold90G27888' => 'sas', 'SHI08601' => 'shi', 'SHI08606' => 'shi', 'SHI17117' => 'shi', 'SHI17119' => 'shi', 'SMO118G0201' => 'smo', 'SMO169G0247' => 'smo', 'SMO176G0006' => 'smo', 'SMO176G0015' => 'smo', 'SMO202G0006' => 'smo', 'SMO240G0050' => 'smo', 'SMO286G0009' => 'smo', 'SMO338G0033' => 'smo', 'SMO356G0533' => 'smo', 'SMO364G0382' => 'smo', 'SMO367G0166' => 'smo', 'SMO367G1098' => 'smo', 'Solyc01g009920.3' => 'sly', 'Solyc01g099300.3' => 'sly', 'Solyc02g084700.3' => 'sly', 'Solyc03g097520.3' => 'sly', 'Solyc06g071580.3' => 'sly', 'Solyc10g081760.3' => 'sly', 'Sopen01g005480' => 'spe', 'Sopen01g042850' => 'spe', 'Sopen02g029370' => 'spe', 'Sopen03g028280' => 'spe', 'Sopen06g027870' => 'spe', 'Sopen10g032270' => 'spe', 'Sp5g18180' => 'spa', 'Sp6g12880' => 'spa', 'Sp6g30850' => 'spa', 'Sp7g22960' => 'spa', 'Sp7g34010' => 'spa', 'SpUn1326_0010' => 'spa', 'TAR371G0242' => 'tar', 'TAR622G0638' => 'tar', 'TAR628G1548' => 'tar', 'TAR629G1079' => 'tar', 'TAR629G3413' => 'tar', 'THA.LOC104804249' => 'tha', 'THA.LOC104808315' => 'tha', 'THA.LOC104809238' => 'tha', 'THA.LOC104825484' => 'tha', 'Thecc.01G025500' => 'tca', 'Thecc.03G015800' => 'tca', 'Thecc.03G018000' => 'tca', 'Thecc.03G134800' => 'tca', 'Thecc.04G014700' => 'tca', 'Thhalv10006991m.g' => 'esa', 'Thhalv10012707m.g' => 'esa', 'Thhalv10015739m.g' => 'esa', 'Thhalv10024553m.g' => 'esa', 'Thhalv10024673m.g' => 'esa', 'Thhalv10029187m.g' => 'esa', 'TPR.G12971' => 'tpr', 'TPR.G29396' => 'tpr', 'TPR.G33376' => 'tpr', 'TPR.G35508' => 'tpr', 'TPR.G35516' => 'tpr', 'TPR.G37317' => 'tpr', 'TPR.G37389' => 'tpr', 'TPR.G37523' => 'tpr', 'TPR.G559' => 'tpr', 'TWI14G0070' => 'twi', 'TWI14G0729' => 'twi', 'TWI18G0596' => 'twi', 'TWI39G0780' => 'twi', 'TWI39G0850' => 'twi', 'TWI73G1052' => 'twi', 'unitig_52.g17485' => 'ugi', 'unitig_61.g26355' => 'ugi', 'vmacro01040' => 'vma', 'vmacro16731' => 'vma', 'vmacro18270' => 'vma', 'vmacro19142' => 'vma', 'vmacro19407' => 'vma', 'vmacro19408' => 'vma', 'vmacro21899' => 'vma', 'vmacro21900' => 'vma', 'vmacro21901' => 'vma', 'VMungo0251G0490' => 'vmu', 'VMungo0251G1748' => 'vmu', 'VMungo1309G0421' => 'vmu', 'Zm00001eb086500' => 'zma', 'Zm00001eb150680' => 'zma', 'Zm00001eb162330' => 'zma', 'Zm00001eb203130' => 'zma', 'Zm00001eb369480' => 'zma', 'Zm00001eb382340' => 'zma', 'Zm00001eb416360' => 'zma' ) $gf_id = 'HOM05D000902' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000902' ) $data_identifier = 'HOM05D000902' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 13, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 10, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 6, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 9, 'hma' => (int) 12, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 4, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 6, 'ppa' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 6, 'rch' => (int) 9, 'rsi' => (int) 9, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 12, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 3, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416360' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000902', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '663', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02470' => 'bna', 'A01p16260' => 'bna', 'A02p01680' => 'bna', 'A03p16600' => 'bna', 'A03p55660' => 'bna', 'A03p64160' => 'bna', 'A03p64170' => 'bna', 'A08p31900' => 'bna', 'A09p59530' => 'bna', 'A10p08230' => 'bna', 'A10p25090' => 'bna', 'Aa31LG3G7100' => 'aar', 'Aa31LG3G7110' => 'aar', 'Aa31LG6G13160' => 'aar', 'Aa31LG7G10770' => 'aar', 'Aa31LG7G3830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2723' => 'aag', 'Actinidia08045' => 'ach', 'Actinidia08888' => 'ach', 'Actinidia18333' => 'ach', 'Actinidia19334' => 'ach', 'Actinidia25552' => 'ach', 'Actinidia26089' => 'ach', 'Actinidia30615' => 'ach', 'Actinidia30616' => 'ach', 'Actinidia33083' => 'ach', 'Actinidia35762' => 'ach', 'Ah.02g110620' => 'amhyb', 'Ah.11g046390' => 'amhyb', 'AL1G31670' => 'aly', 'AL6G23730' => 'aly', 'AL7G14740' => 'aly', 'AL7G14750' => 'aly', 'AL7G14760' => 'aly', 'AL7G28220' => 'aly', 'AL8G24940' => 'aly', 'Aqoxy3G01665' => 'aox', 'Aqoxy3G02853' => 'aox', 'Aqoxy5G01513' => 'aox', 'Aqoxy5G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8SKA4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ75LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKDA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0LJZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7REX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZP4YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWX7I5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2QKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS0L9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPCD8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q161UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC7XCF' => 'arhy', 'AT1G19100' => 'ath', 'AT4G24970' => 'ath', 'AT4G36270' => 'ath', 'AT4G36280' => 'ath', 'AT4G36290' => 'ath', 'AT5G13130' => 'ath', 'AT5G50780' => 'ath', 'ATR0582G266' => 'atr', 'ATR0661G195' => 'atr', 'ATR1152G031' => 'atr', 'Atru.chr11.2382' => 'acertr', 'Atru.chr12.2337' => 'acertr', 'Atru.chr3.744' => 'acertr', 'Atru.chr6.1870' => 'acertr', 'Atru.chr9.2515' => 'acertr', 'AUR62004120' => 'cqu', 'AUR62005667' => 'cqu', 'AUR62007634' => 'cqu', 'AUR62008186' => 'cqu', 'AUR62008187' => 'cqu', 'AUR62008188' => 'cqu', 'AUR62027954' => 'cqu', 'AUR62028766' => 'cqu', 'AUR62028767' => 'cqu', 'AUR62028768' => 'cqu', 'AUR62028886' => 'cqu', 'AUR62029563' => 'cqu', 'AUR62038832' => 'cqu', 'BcaB01g04149' => 'bca', 'BcaB03g12940' => 'bca', 'BcaB03g13090' => 'bca', 'BcaB03g14466' => 'bca', 'BcaB05g24035' => 'bca', 'BcaC01g06050' => 'bca', 'BcaC04g19148' => 'bca', 'BcaC04g20761' => 'bca', 'BcaC06g32845' => 'bca', 'BcaC07g41274' => 'bca', 'BcaC09g50827' => 'bca', 'BcaNung00741' => 'bca', 'BcaNung00742' => 'bca', 'BcaNung01859' => 'bca', 'BcaNung03985' => 'bca', 'BcaNung03989' => 'bca', 'BcaNung05661' => 'bca', 'BolC1t00257H' => 'bol', 'BolC1t01956H' => 'bol', 'BolC2t06534H' => 'bol', 'BolC3t14334H' => 'bol', 'BolC5t30451H' => 'bol', 'BolC7t45880H' => 'bol', 'BolC7t46586H' => 'bol', 'BolC8t49301H' => 'bol', 'BolC8t51837H' => 'bol', 'BolC9t56822H' => 'bol', 'BolC9t59235H' => 'bol', 'BraA01t00234Z' => 'bra', 'BraA01t01563Z' => 'bra', 'BraA02t05147Z' => 'bra', 'BraA03t10947Z' => 'bra', 'BraA03t14633Z' => 'bra', 'BraA08t35112Z' => 'bra', 'BraA09t41330Z' => 'bra', 'BraA10t44570Z' => 'bra', 'C01p02670' => 'bna', 'C01p20260' => 'bna', 'C02p05890' => 'bna', 'C03p19530' => 'bna', 'C05p17470' => 'bna', 'C07p53900' => 'bna', 'C07p61630' => 'bna', 'C08p16800' => 'bna', 'C08p42810' => 'bna', 'C09p39480' => 'bna', 'C09p63980' => 'bna', 'CAN.G1001.7' => 'can', 'CAN.G1034.55' => 'can', 'CAN.G143.7' => 'can', 'CAN.G3340.1' => 'can', 'CAN.G358.19' => 'can', 'CAN.G373.2' => 'can', 'CAN.G674.16' => 'can', 'CAN.G674.17' => 'can', 'CAN.G674.18' => 'can', 'CAN.G732.2' => 'can', 'CAN.G732.3' => 'can', 'CAN.G993.39' => 'can', 'CANSAT01G2052' => 'cansat', 'CANSAT80G0070' => 'cansat', 'CANSAT80G0483' => 'cansat', 'CANSAT80G0625' => 'cansat', 'CARHR019690' => 'chi', 'CARHR080280' => 'chi', 'CARHR152750' => 'chi', 'CARHR152760' => 'chi', 'CARHR152770' => 'chi', 'CARHR200340' => 'chi', 'CARHR232370' => 'chi', 'CARHR244670' => 'chi', 'CARHR244680' => 'chi', 'CARHR257520' => 'chi', 'Carub.0001s1872' => 'cru', 'Carub.0006s1130' => 'cru', 'Carub.0007s0396' => 'cru', 'Carub.0007s0397' => 'cru', 'Carub.0007s1608' => 'cru', 'Carub.0008s1068' => 'cru', 'Carub.0008s1077' => 'cru', 'Ca_16158_v3' => 'car', 'Ca_17571_v3' => 'car', 'Ca_21936_v3' => 'car', 'Ca_22350_v3' => 'car', 'CBR_g22445' => 'cbr', 'CBR_g26290' => 'cbr', 'Cc04_g09610' => 'ccan', 'Cc04_g12280' => 'ccan', 'Cc07_g10230' => 'ccan', 'CDE02G0093' => 'cde', 'CDE02G0701' => 'cde', 'CDE04G1050' => 'cde', 'CDE05G1833' => 'cde', 'CDE05G3058' => 'cde', 'CDE05G3380' => 'cde', 'CDE06G0536' => 'cde', 'Cfa006923' => 'cfa', 'Cfa009402' => 'cfa', 'Cfa018751' => 'cfa', 'Cfa019164' => 'cfa', 'Cfa022935' => 'cfa', 'Ciclev10019081m.g' => 'ccl', 'Ciclev10025076m.g' => 'ccl', 'Ciclev10030712m.g' => 'ccl', 'Ciclev10033760m.g' => 'ccl', 'CiPaw.05G105600' => 'cil', 'CiPaw.08G136700' => 'cil', 'CiPaw.11G003900' => 'cil', 'CiPaw.11G023700' => 'cil', 'CiPaw.12G003700' => 'cil', 'ClCG06G017100' => 'cla', 'ClCG06G018110' => 'cla', 'ClCG07G008800' => 'cla', 'ClCG07G015330' => 'cla', 'COL.COLO4_13698' => 'col', 'COL.COLO4_16659' => 'col', 'COL.COLO4_21986' => 'col', 'COL.COLO4_24049' => 'col', 'COL.COLO4_29061' => 'col', 'COL.COLO4_29075' => 'col', 'COL.COLO4_30094' => 'col', 'Cpa.g.c33689' => 'cpa', 'Cpa.g.sc108.39' => 'cpa', 'Cpa.g.sc108.41' => 'cpa', 'Cpa.g.sc1163.1' => 'cpa', 'Cpa.g.sc4.155' => 'cpa', 'Cpa.g.sc6.194' => 'cpa', 'CsaV3_1G000340' => 'csa', 'CsaV3_1G001400' => 'csa', 'CsaV3_4G002220' => 'csa', 'CsaV3_4G005370' => 'csa', 'CSS0007487' => 'camsi', 'CSS0008066' => 'camsi', 'CSS0009120' => 'camsi', 'CSS0015512' => 'camsi', 'CSS0022409' => 'camsi', 'CSS0025358' => 'camsi', 'CSS0044547' => 'camsi', 'DCAR_013057' => 'dca', 'DCAR_015058' => 'dca', 'DCAR_016027' => 'dca', 'DCAR_017327' => 'dca', 'DCAR_020743' => 'dca', 'DCAR_026157' => 'dca', 'DCAR_032339' => 'dca', 'DCAR_032340' => 'dca', 'Dinv11200' => 'din', 'Dinv11201' => 'din', 'Dinv20631' => 'din', 'Dinv23182' => 'din', 'Dinv33466' => 'din', 'Dinv33583' => 'din', 'Dinv38565' => 'din', 'Duzib068G0200' => 'dzi', 'Duzib147G0132' => 'dzi', 'Duzib147G0635' => 'dzi', 'Duzib205G1670' => 'dzi', 'Duzib251G0606' => 'dzi', 'ECA232G3336' => 'eca', 'ECA232G3763' => 'eca', 'ECA232G4845' => 'eca', 'ECA234G1607' => 'eca', 'ECA246G0932' => 'eca', 'ECA247G0781' => 'eca', 'ECA247G1932' => 'eca', 'ECA247G2079' => 'eca', 'ECA247G3338' => 'eca', 'ECA247G4115' => 'eca', 'EL10Ac3g06552' => 'bvu', 'EL10Ac5g10721' => 'bvu', 'EL10Ac5g10722' => 'bvu', 'EL10Ac5g10723' => 'bvu', 'EL10Ac5g11361' => 'bvu', 'EL10Ac6g13553' => 'bvu', 'EL10As8g23872' => 'bvu', 'Eucgr.B00250' => 'egr', 'Eucgr.B00251' => 'egr', 'Eucgr.B03533' => 'egr', 'Eucgr.I02381' => 'egr', 'Eucgr.K02700' => 'egr', 'FAN02G0174' => 'fan', 'FAN02G3146' => 'fan', 'FAN04G1672' => 'fan', 'FAN04G2273' => 'fan', 'FAN05G2791' => 'fan', 'FAN05G4035' => 'fan', 'FAN07G0834' => 'fan', 'FAN08G1198' => 'fan', 'FAN09G4182' => 'fan', 'FAN12G0496' => 'fan', 'FAN13G1027' => 'fan', 'FAN13G2951' => 'fan', 'FAN14G0705' => 'fan', 'FAN14G0720' => 'fan', 'FAN17G0201' => 'fan', 'FAN17G2665' => 'fan', 'FAN18G1456' => 'fan', 'FAN18G1525' => 'fan', 'FAN18G3500' => 'fan', 'FAN28G2670' => 'fan', 'FvH4_1g12391' => 'fve', 'FvH4_4g23220' => 'fve', 'FvH4_5g08810' => 'fve', 'FvH4_5g28960' => 'fve', 'FvH4_6g42820' => 'fve', 'FvH4_6g51110' => 'fve', 'Glyma.02G051802' => 'gma', 'Glyma.04G185300' => 'gma', 'Glyma.05G202900' => 'gma', 'Glyma.08G010300' => 'gma', 'Glyma.16G131900' => 'gma', 'Glyma.17G087900' => 'gma', 'Gohir.A07G048600' => 'ghi', 'Gohir.A11G179000' => 'ghi', 'Gohir.A12G140900' => 'ghi', 'Gohir.A12G140950' => 'ghi', 'Gohir.A12G191700' => 'ghi', 'Gohir.A13G086300' => 'ghi', 'Gohir.D07G052900' => 'ghi', 'Gohir.D11G186600' => 'ghi', 'Gohir.D12G145575' => 'ghi', 'Gohir.D12G145650' => 'ghi', 'Gohir.D12G145725' => 'ghi', 'Gohir.D12G194050' => 'ghi', 'Gohir.D13G091800' => 'ghi', 'Gorai.001G055900' => 'gra', 'Gorai.007G198400' => 'gra', 'Gorai.008G157000' => 'gra', 'Gorai.008G157100' => 'gra', 'Gorai.008G208700' => 'gra', 'Gorai.010G138700' => 'gra', 'GSVIVG01000977001' => 'vvi', 'GSVIVG01007708001' => 'vvi', 'GSVIVG01008587001' => 'vvi', 'GSVIVG01018849001' => 'vvi', 'GSVIVG01032432001' => 'vvi', 'HanXRQChr02g0034131' => 'han', 'HanXRQChr02g0035981' => 'han', 'HanXRQChr02g0035991' => 'han', 'HanXRQChr05g0155611' => 'han', 'HanXRQChr05g0155621' => 'han', 'HanXRQChr08g0236501' => 'han', 'HanXRQChr09g0261321' => 'han', 'HanXRQChr09g0272081' => 'han', 'HanXRQChr10g0310741' => 'han', 'HanXRQChr11g0325591' => 'han', 'HanXRQChr12g0385691' => 'han', 'HanXRQChr13g0387801' => 'han', 'HanXRQChr15g0463011' => 'han', 'Haze_03826' => 'cav', 'Haze_03827' => 'cav', 'Haze_07183' => 'cav', 'Haze_07537' => 'cav', 'Haze_07539' => 'cav', 'Haze_12461' => 'cav', 'Haze_16115' => 'cav', 'Haze_16808' => 'cav', 'Haze_18531' => 'cav', 'Hma1.2p1_0046F.1_g026700' => 'hma', 'Hma1.2p1_0046F.1_g026710' => 'hma', 'Hma1.2p1_0168F.1_g074340' => 'hma', 'Hma1.2p1_0266F.1_g107030' => 'hma', 'Hma1.2p1_0266F.1_g107060' => 'hma', 'Hma1.2p1_0275F.1_g110510' => 'hma', 'Hma1.2p1_0592F.1_g185490' => 'hma', 'Hma1.2p1_0592F.1_g185500' => 'hma', 'Hma1.2p1_0592F.1_g185510' => 'hma', 'Hma1.2p1_0592F.1_g185520' => 'hma', 'Hma1.2p1_0592F.1_g185530' => 'hma', 'Hma1.2p1_0818F.1_g223450' => 'hma', 'HPP92_009708' => 'vpl', 'HPP92_009793' => 'vpl', 'HPP92_009796' => 'vpl', 'HPP92_009797' => 'vpl', 'HPP92_014940' => 'vpl', 'HPP92_014988' => 'vpl', 'Hund02463' => 'sun', 'Hund02760' => 'sun', 'Hund05071' => 'sun', 'Hund10108' => 'sun', 'Hund11204' => 'sun', 'Hund14016' => 'sun', 'Hund16464' => 'sun', 'Lalb_Chr09g0333391' => 'lal', 'Lalb_Chr11g0070461' => 'lal', 'Lalb_Chr12g0201671' => 'lal', 'Lalb_Chr13g0297161' => 'lal', 'Lj1g0002823' => 'lja', 'Lj3C1074T6' => 'lonja', 'Lj4A212T28' => 'lonja', 'Lj4g0005516' => 'lja', 'Lj4g0013705' => 'lja', 'Lj4g0027865' => 'lja', 'Lj5C92G16' => 'lonja', 'Lj5C92T12' => 'lonja', 'Lj7C596T3' => 'lonja', 'Lj9A446G59' => 'lonja', 'Lj9A482G21' => 'lonja', 'Lsat_1_v5_gn_1_28261' => 'lsa', 'Lsat_1_v5_gn_1_28281' => 'lsa', 'Lsat_1_v5_gn_1_32721' => 'lsa', 'Lsat_1_v5_gn_4_151760' => 'lsa', 'Lsat_1_v5_gn_4_2120' => 'lsa', 'Lsat_1_v5_gn_4_75761' => 'lsa', 'Lsat_1_v5_gn_5_10920' => 'lsa', 'Manes.02G099900' => 'mes', 'Manes.11G096200' => 'mes', 'Manes.12G007200' => 'mes', 'Manes.14G048300' => 'mes', 'Manes.17G114700' => 'mes', 'Mapoly0002s0070' => 'mpo', 'Mapoly0029s0099' => 'mpo', 'MBI07_g24742_MAGBIO' => 'mbi', 'MBI10_g27988_MAGBIO' => 'mbi', 'MBI11_g13057_MAGBIO' => 'mbi', 'MD02G1137200' => 'mdo', 'MD06G1137200' => 'mdo', 'MD07G1122300' => 'mdo', 'MD09G1078200' => 'mdo', 'MD13G1123700' => 'mdo', 'MD14G1151900' => 'mdo', 'MD17G1030900' => 'mdo', 'MD17G1068200' => 'mdo', 'MD17G1068600' => 'mdo', 'Medtr3g077540' => 'mtr', 'Medtr4g105530' => 'mtr', 'Medtr8g076580' => 'mtr', 'Medtr8g076590' => 'mtr', 'Medtr8g096410' => 'mtr', 'MELO3C016411.2' => 'cme', 'MELO3C017780.2' => 'cme', 'MELO3C022560.2' => 'cme', 'MELO3C026187.2' => 'cme', 'MELO3C026286.2' => 'cme', 'MELO3C032854.2' => 'cme', 'Migut.H02495' => 'egut', 'Migut.I00561' => 'egut', 'Migut.K01015' => 'egut', 'Migut.K01016' => 'egut', 'Migut.L00743' => 'egut', 'Migut.L00744' => 'egut', 'Migut.L00746' => 'egut', 'Migut.L00798' => 'egut', 'Migut.L00799' => 'egut', 'Migut.N02096' => 'egut', 'MSTRG.11259' => 'ama', 'MSTRG.23142' => 'ama', 'MSTRG.2499' => 'ama', 'Nitab4.5_0000003g0730' => 'nta', 'Nitab4.5_0000137g0020' => 'nta', 'Nitab4.5_0000721g0210' => 'nta', 'Nitab4.5_0000723g0050' => 'nta', 'Nitab4.5_0000913g0070' => 'nta', 'Nitab4.5_0001332g0040' => 'nta', 'Nitab4.5_0001771g0050' => 'nta', 'Nitab4.5_0001918g0050' => 'nta', 'Nitab4.5_0002686g0030' => 'nta', 'Nitab4.5_0003156g0020' => 'nta', 'Nitab4.5_0003383g0040' => 'nta', 'Nitab4.5_0003918g0010' => 'nta', 'Nitab4.5_0006760g0010' => 'nta', 'Nn1g05981' => 'nnu', 'Nn1g06288' => 'nnu', 'Nn3g16371' => 'nnu', 'Nn3g16786' => 'nnu', 'Nn4g22232' => 'nnu', 'Oeu005144.1' => 'oeu', 'Oeu005145.1' => 'oeu', 'Oeu011348.1' => 'oeu', 'Oeu016415.1' => 'oeu', 'Oeu023501.1' => 'oeu', 'Oeu044473.1' => 'oeu', 'Oeu048892.2' => 'oeu', 'Os01g0549200' => 'osa', 'Os02g0469300' => 'osa', 'Os04g0311100' => 'osa', 'Os06g0474900' => 'osa', 'Os10g0181700' => 'osa', 'Os11g0454800' => 'osa', 'Peaxi162Scf00037g00714' => 'pax', 'Peaxi162Scf00084g01217' => 'pax', 'Peaxi162Scf00257g00217' => 'pax', 'Peaxi162Scf00516g00215' => 'pax', 'Peaxi162Scf00689g00123' => 'pax', 'PGR044G2719' => 'pgr', 'PGR083G1360' => 'pgr', 'PGR102G2849' => 'pgr', 'PGR119G2534' => 'pgr', 'PGSC0003DMG400003538' => 'stu', 'PGSC0003DMG400028138' => 'stu', 'PGSC0003DMG400031732' => 'stu', 'PGSC0003DMG400038165' => 'stu', 'Phvul.002G284600' => 'pvu', 'Phvul.003G258200' => 'pvu', 'Phvul.009G176500' => 'pvu', 'Potri.003G167201' => 'ptr', 'Potri.005G118400' => 'ptr', 'Potri.012G089000' => 'ptr', 'Potri.012G102800' => 'ptr', 'Potri.015G079400' => 'ptr', 'Potri.015G100900' => 'ptr', 'Pp3c14_9810' => 'ppa', 'Pp3c15_10450' => 'ppa', 'Pp3c20_19150' => 'ppa', 'Pp3c23_12740' => 'ppa', 'Pp3c23_6310' => 'ppa', 'Pp3c24_3720' => 'ppa', 'Pp3c27_2580' => 'ppa', 'Pp3c9_8990' => 'ppa', 'PRCOL_00002854' => 'pco', 'Prupe.1G221200' => 'ppe', 'Prupe.3G289000' => 'ppe', 'Prupe.5G147000' => 'ppe', 'Prupe.6G157300' => 'ppe', 'Prupe.7G163400' => 'ppe', 'Psat0s2177g0040' => 'psa', 'Psat3g174760' => 'psa', 'Psat3g192160' => 'psa', 'Psat4g058520' => 'psa', 'Psat4g096840' => 'psa', 'Psat7g037320' => 'psa', 'PSO017G1274' => 'pso', 'PSO017G5166' => 'pso', 'PSO063G4558' => 'pso', 'PSO170G4458' => 'pso', 'PSO170G5005' => 'pso', 'PSO210G6156' => 'pso', 'PSO210G6635' => 'pso', 'PSO210G7397' => 'pso', 'PSO210G7700' => 'pso', 'PSO455G0035' => 'pso', 'PSO455G0180' => 'pso', 'PSO478G4515' => 'pso', 'PSO832G1305' => 'pso', 'PSO832G3489' => 'pso', 'QL02p075247' => 'qlo', 'QL03p051148' => 'qlo', 'QL05p010313' => 'qlo', 'QL06p034627' => 'qlo', 'QL10p001889' => 'qlo', 'QL10p010846' => 'qlo', 'RcHm_v2.0_Chr1g0350621' => 'rch', 'RcHm_v2.0_Chr1g0350641' => 'rch', 'RcHm_v2.0_Chr2g0092891' => 'rch', 'RcHm_v2.0_Chr2g0100251' => 'rch', 'RcHm_v2.0_Chr2g0158661' => 'rch', 'RcHm_v2.0_Chr2g0172741' => 'rch', 'RcHm_v2.0_Chr4g0429571' => 'rch', 'RcHm_v2.0_Chr5g0042471' => 'rch', 'RcHm_v2.0_Chr7g0189451' => 'rch', 'Rhsim08G0052000' => 'rsi', 'Rhsim08G0174400' => 'rsi', 'Rhsim08G0193200' => 'rsi', 'Rhsim10G0214800' => 'rsi', 'Rhsim10G0214900' => 'rsi', 'Rhsim10G0215000' => 'rsi', 'Rhsim12G0022900' => 'rsi', 'Rhsim12G0177500' => 'rsi', 'Rhsim12G0177700' => 'rsi', 'Sabra03G0122600' => 'sbr', 'Sabra05G0097400' => 'sbr', 'Sabra12G0064100' => 'sbr', 'Sabra15G0121300' => 'sbr', 'SalBow2G0642' => 'sbo', 'SalBow5G2667' => 'sbo', 'SalBow5G4873' => 'sbo', 'SalBow8G2395' => 'sbo', 'Sc03g0003290' => 'sci', 'Sc10g0010130' => 'sci', 'Sc22g0003650' => 'sci', 'Sed0001603' => 'sed', 'Sed0004259' => 'sed', 'Sed0006789' => 'sed', 'Sed0011838' => 'sed', 'Sed0012964' => 'sed', 'Sed0016383' => 'sed', 'Sed0019010' => 'sed', 'Sed0020188' => 'sed', 'SEGI_04702' => 'sgi', 'SEGI_17231' => 'sgi', 'SEGI_18877' => 'sgi', 'SEGI_25196' => 'sgi', 'SEGI_25515' => 'sgi', 'SEGI_28445' => 'sgi', 'SEGI_37452' => 'sgi', 'SGA_v2.0_scaffold188G40336' => 'sas', 'SGA_v2.0_scaffold228G43247' => 'sas', 'SGA_v2.0_scaffold280G46853' => 'sas', 'SGA_v2.0_scaffold34G13808' => 'sas', 'SGA_v2.0_scaffold40G15576' => 'sas', 'SGA_v2.0_scaffold611G53188' => 'sas', 'SGA_v2.0_scaffold78G25461' => 'sas', 'SGA_v2.0_scaffold90G27888' => 'sas', 'SHI08601' => 'shi', 'SHI08606' => 'shi', 'SHI17117' => 'shi', 'SHI17119' => 'shi', 'SMO118G0201' => 'smo', 'SMO169G0247' => 'smo', 'SMO176G0006' => 'smo', 'SMO176G0015' => 'smo', 'SMO202G0006' => 'smo', 'SMO240G0050' => 'smo', 'SMO286G0009' => 'smo', 'SMO338G0033' => 'smo', 'SMO356G0533' => 'smo', 'SMO364G0382' => 'smo', 'SMO367G0166' => 'smo', 'SMO367G1098' => 'smo', 'Solyc01g009920.3' => 'sly', 'Solyc01g099300.3' => 'sly', 'Solyc02g084700.3' => 'sly', 'Solyc03g097520.3' => 'sly', 'Solyc06g071580.3' => 'sly', 'Solyc10g081760.3' => 'sly', 'Sopen01g005480' => 'spe', 'Sopen01g042850' => 'spe', 'Sopen02g029370' => 'spe', 'Sopen03g028280' => 'spe', 'Sopen06g027870' => 'spe', 'Sopen10g032270' => 'spe', 'Sp5g18180' => 'spa', 'Sp6g12880' => 'spa', 'Sp6g30850' => 'spa', 'Sp7g22960' => 'spa', 'Sp7g34010' => 'spa', 'SpUn1326_0010' => 'spa', 'TAR371G0242' => 'tar', 'TAR622G0638' => 'tar', 'TAR628G1548' => 'tar', 'TAR629G1079' => 'tar', 'TAR629G3413' => 'tar', 'THA.LOC104804249' => 'tha', 'THA.LOC104808315' => 'tha', 'THA.LOC104809238' => 'tha', 'THA.LOC104825484' => 'tha', 'Thecc.01G025500' => 'tca', 'Thecc.03G015800' => 'tca', 'Thecc.03G018000' => 'tca', 'Thecc.03G134800' => 'tca', 'Thecc.04G014700' => 'tca', 'Thhalv10006991m.g' => 'esa', 'Thhalv10012707m.g' => 'esa', 'Thhalv10015739m.g' => 'esa', 'Thhalv10024553m.g' => 'esa', 'Thhalv10024673m.g' => 'esa', 'Thhalv10029187m.g' => 'esa', 'TPR.G12971' => 'tpr', 'TPR.G29396' => 'tpr', 'TPR.G33376' => 'tpr', 'TPR.G35508' => 'tpr', 'TPR.G35516' => 'tpr', 'TPR.G37317' => 'tpr', 'TPR.G37389' => 'tpr', 'TPR.G37523' => 'tpr', 'TPR.G559' => 'tpr', 'TWI14G0070' => 'twi', 'TWI14G0729' => 'twi', 'TWI18G0596' => 'twi', 'TWI39G0780' => 'twi', 'TWI39G0850' => 'twi', 'TWI73G1052' => 'twi', 'unitig_52.g17485' => 'ugi', 'unitig_61.g26355' => 'ugi', 'vmacro01040' => 'vma', 'vmacro16731' => 'vma', 'vmacro18270' => 'vma', 'vmacro19142' => 'vma', 'vmacro19407' => 'vma', 'vmacro19408' => 'vma', 'vmacro21899' => 'vma', 'vmacro21900' => 'vma', 'vmacro21901' => 'vma', 'VMungo0251G0490' => 'vmu', 'VMungo0251G1748' => 'vmu', 'VMungo1309G0421' => 'vmu', 'Zm00001eb086500' => 'zma', 'Zm00001eb150680' => 'zma', 'Zm00001eb162330' => 'zma', 'Zm00001eb203130' => 'zma', 'Zm00001eb369480' => 'zma', 'Zm00001eb382340' => 'zma', 'Zm00001eb416360' => 'zma' ), 'gf_id' => 'HOM05D000902', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000902' ), 'data_identifier' => 'HOM05D000902', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000902', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '663', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02470' => 'bna', 'A01p16260' => 'bna', 'A02p01680' => 'bna', 'A03p16600' => 'bna', 'A03p55660' => 'bna', 'A03p64160' => 'bna', 'A03p64170' => 'bna', 'A08p31900' => 'bna', 'A09p59530' => 'bna', 'A10p08230' => 'bna', 'A10p25090' => 'bna', 'Aa31LG3G7100' => 'aar', 'Aa31LG3G7110' => 'aar', 'Aa31LG6G13160' => 'aar', 'Aa31LG7G10770' => 'aar', 'Aa31LG7G3830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2723' => 'aag', 'Actinidia08045' => 'ach', 'Actinidia08888' => 'ach', 'Actinidia18333' => 'ach', 'Actinidia19334' => 'ach', 'Actinidia25552' => 'ach', 'Actinidia26089' => 'ach', 'Actinidia30615' => 'ach', 'Actinidia30616' => 'ach', 'Actinidia33083' => 'ach', 'Actinidia35762' => 'ach', 'Ah.02g110620' => 'amhyb', 'Ah.11g046390' => 'amhyb', 'AL1G31670' => 'aly', 'AL6G23730' => 'aly', 'AL7G14740' => 'aly', 'AL7G14750' => 'aly', 'AL7G14760' => 'aly', 'AL7G28220' => 'aly', 'AL8G24940' => 'aly', 'Aqoxy3G01665' => 'aox', 'Aqoxy3G02853' => 'aox', 'Aqoxy5G01513' => 'aox', 'Aqoxy5G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8SKA4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ75LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKDA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0LJZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7REX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZP4YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWX7I5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2QKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS0L9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPCD8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q161UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC7XCF' => 'arhy', 'AT1G19100' => 'ath', 'AT4G24970' => 'ath', 'AT4G36270' => 'ath', 'AT4G36280' => 'ath', 'AT4G36290' => 'ath', 'AT5G13130' => 'ath', 'AT5G50780' => 'ath', 'ATR0582G266' => 'atr', 'ATR0661G195' => 'atr', 'ATR1152G031' => 'atr', 'Atru.chr11.2382' => 'acertr', 'Atru.chr12.2337' => 'acertr', 'Atru.chr3.744' => 'acertr', 'Atru.chr6.1870' => 'acertr', 'Atru.chr9.2515' => 'acertr', 'AUR62004120' => 'cqu', 'AUR62005667' => 'cqu', 'AUR62007634' => 'cqu', 'AUR62008186' => 'cqu', 'AUR62008187' => 'cqu', 'AUR62008188' => 'cqu', 'AUR62027954' => 'cqu', 'AUR62028766' => 'cqu', 'AUR62028767' => 'cqu', 'AUR62028768' => 'cqu', 'AUR62028886' => 'cqu', 'AUR62029563' => 'cqu', 'AUR62038832' => 'cqu', 'BcaB01g04149' => 'bca', 'BcaB03g12940' => 'bca', 'BcaB03g13090' => 'bca', 'BcaB03g14466' => 'bca', 'BcaB05g24035' => 'bca', 'BcaC01g06050' => 'bca', 'BcaC04g19148' => 'bca', 'BcaC04g20761' => 'bca', 'BcaC06g32845' => 'bca', 'BcaC07g41274' => 'bca', 'BcaC09g50827' => 'bca', 'BcaNung00741' => 'bca', 'BcaNung00742' => 'bca', 'BcaNung01859' => 'bca', 'BcaNung03985' => 'bca', 'BcaNung03989' => 'bca', 'BcaNung05661' => 'bca', 'BolC1t00257H' => 'bol', 'BolC1t01956H' => 'bol', 'BolC2t06534H' => 'bol', 'BolC3t14334H' => 'bol', 'BolC5t30451H' => 'bol', 'BolC7t45880H' => 'bol', 'BolC7t46586H' => 'bol', 'BolC8t49301H' => 'bol', 'BolC8t51837H' => 'bol', 'BolC9t56822H' => 'bol', 'BolC9t59235H' => 'bol', 'BraA01t00234Z' => 'bra', 'BraA01t01563Z' => 'bra', 'BraA02t05147Z' => 'bra', 'BraA03t10947Z' => 'bra', 'BraA03t14633Z' => 'bra', 'BraA08t35112Z' => 'bra', 'BraA09t41330Z' => 'bra', 'BraA10t44570Z' => 'bra', 'C01p02670' => 'bna', 'C01p20260' => 'bna', 'C02p05890' => 'bna', 'C03p19530' => 'bna', 'C05p17470' => 'bna', 'C07p53900' => 'bna', 'C07p61630' => 'bna', 'C08p16800' => 'bna', 'C08p42810' => 'bna', 'C09p39480' => 'bna', 'C09p63980' => 'bna', 'CAN.G1001.7' => 'can', 'CAN.G1034.55' => 'can', 'CAN.G143.7' => 'can', 'CAN.G3340.1' => 'can', 'CAN.G358.19' => 'can', 'CAN.G373.2' => 'can', 'CAN.G674.16' => 'can', 'CAN.G674.17' => 'can', 'CAN.G674.18' => 'can', 'CAN.G732.2' => 'can', 'CAN.G732.3' => 'can', 'CAN.G993.39' => 'can', 'CANSAT01G2052' => 'cansat', 'CANSAT80G0070' => 'cansat', 'CANSAT80G0483' => 'cansat', 'CANSAT80G0625' => 'cansat', 'CARHR019690' => 'chi', 'CARHR080280' => 'chi', 'CARHR152750' => 'chi', 'CARHR152760' => 'chi', 'CARHR152770' => 'chi', 'CARHR200340' => 'chi', 'CARHR232370' => 'chi', 'CARHR244670' => 'chi', 'CARHR244680' => 'chi', 'CARHR257520' => 'chi', 'Carub.0001s1872' => 'cru', 'Carub.0006s1130' => 'cru', 'Carub.0007s0396' => 'cru', 'Carub.0007s0397' => 'cru', 'Carub.0007s1608' => 'cru', 'Carub.0008s1068' => 'cru', 'Carub.0008s1077' => 'cru', 'Ca_16158_v3' => 'car', 'Ca_17571_v3' => 'car', 'Ca_21936_v3' => 'car', 'Ca_22350_v3' => 'car', 'CBR_g22445' => 'cbr', 'CBR_g26290' => 'cbr', 'Cc04_g09610' => 'ccan', 'Cc04_g12280' => 'ccan', 'Cc07_g10230' => 'ccan', 'CDE02G0093' => 'cde', 'CDE02G0701' => 'cde', 'CDE04G1050' => 'cde', 'CDE05G1833' => 'cde', 'CDE05G3058' => 'cde', 'CDE05G3380' => 'cde', 'CDE06G0536' => 'cde', 'Cfa006923' => 'cfa', 'Cfa009402' => 'cfa', 'Cfa018751' => 'cfa', 'Cfa019164' => 'cfa', 'Cfa022935' => 'cfa', 'Ciclev10019081m.g' => 'ccl', 'Ciclev10025076m.g' => 'ccl', 'Ciclev10030712m.g' => 'ccl', 'Ciclev10033760m.g' => 'ccl', 'CiPaw.05G105600' => 'cil', 'CiPaw.08G136700' => 'cil', 'CiPaw.11G003900' => 'cil', 'CiPaw.11G023700' => 'cil', 'CiPaw.12G003700' => 'cil', 'ClCG06G017100' => 'cla', 'ClCG06G018110' => 'cla', 'ClCG07G008800' => 'cla', 'ClCG07G015330' => 'cla', 'COL.COLO4_13698' => 'col', 'COL.COLO4_16659' => 'col', 'COL.COLO4_21986' => 'col', 'COL.COLO4_24049' => 'col', 'COL.COLO4_29061' => 'col', 'COL.COLO4_29075' => 'col', 'COL.COLO4_30094' => 'col', 'Cpa.g.c33689' => 'cpa', 'Cpa.g.sc108.39' => 'cpa', 'Cpa.g.sc108.41' => 'cpa', 'Cpa.g.sc1163.1' => 'cpa', 'Cpa.g.sc4.155' => 'cpa', 'Cpa.g.sc6.194' => 'cpa', 'CsaV3_1G000340' => 'csa', 'CsaV3_1G001400' => 'csa', 'CsaV3_4G002220' => 'csa', 'CsaV3_4G005370' => 'csa', 'CSS0007487' => 'camsi', 'CSS0008066' => 'camsi', 'CSS0009120' => 'camsi', 'CSS0015512' => 'camsi', 'CSS0022409' => 'camsi', 'CSS0025358' => 'camsi', 'CSS0044547' => 'camsi', 'DCAR_013057' => 'dca', 'DCAR_015058' => 'dca', 'DCAR_016027' => 'dca', 'DCAR_017327' => 'dca', 'DCAR_020743' => 'dca', 'DCAR_026157' => 'dca', 'DCAR_032339' => 'dca', 'DCAR_032340' => 'dca', 'Dinv11200' => 'din', 'Dinv11201' => 'din', 'Dinv20631' => 'din', 'Dinv23182' => 'din', 'Dinv33466' => 'din', 'Dinv33583' => 'din', 'Dinv38565' => 'din', 'Duzib068G0200' => 'dzi', 'Duzib147G0132' => 'dzi', 'Duzib147G0635' => 'dzi', 'Duzib205G1670' => 'dzi', 'Duzib251G0606' => 'dzi', 'ECA232G3336' => 'eca', 'ECA232G3763' => 'eca', 'ECA232G4845' => 'eca', 'ECA234G1607' => 'eca', 'ECA246G0932' => 'eca', 'ECA247G0781' => 'eca', 'ECA247G1932' => 'eca', 'ECA247G2079' => 'eca', 'ECA247G3338' => 'eca', 'ECA247G4115' => 'eca', 'EL10Ac3g06552' => 'bvu', 'EL10Ac5g10721' => 'bvu', 'EL10Ac5g10722' => 'bvu', 'EL10Ac5g10723' => 'bvu', 'EL10Ac5g11361' => 'bvu', 'EL10Ac6g13553' => 'bvu', 'EL10As8g23872' => 'bvu', 'Eucgr.B00250' => 'egr', 'Eucgr.B00251' => 'egr', 'Eucgr.B03533' => 'egr', 'Eucgr.I02381' => 'egr', 'Eucgr.K02700' => 'egr', 'FAN02G0174' => 'fan', 'FAN02G3146' => 'fan', 'FAN04G1672' => 'fan', 'FAN04G2273' => 'fan', 'FAN05G2791' => 'fan', 'FAN05G4035' => 'fan', 'FAN07G0834' => 'fan', 'FAN08G1198' => 'fan', 'FAN09G4182' => 'fan', 'FAN12G0496' => 'fan', 'FAN13G1027' => 'fan', 'FAN13G2951' => 'fan', 'FAN14G0705' => 'fan', 'FAN14G0720' => 'fan', 'FAN17G0201' => 'fan', 'FAN17G2665' => 'fan', 'FAN18G1456' => 'fan', 'FAN18G1525' => 'fan', 'FAN18G3500' => 'fan', 'FAN28G2670' => 'fan', 'FvH4_1g12391' => 'fve', 'FvH4_4g23220' => 'fve', 'FvH4_5g08810' => 'fve', 'FvH4_5g28960' => 'fve', 'FvH4_6g42820' => 'fve', 'FvH4_6g51110' => 'fve', 'Glyma.02G051802' => 'gma', 'Glyma.04G185300' => 'gma', 'Glyma.05G202900' => 'gma', 'Glyma.08G010300' => 'gma', 'Glyma.16G131900' => 'gma', 'Glyma.17G087900' => 'gma', 'Gohir.A07G048600' => 'ghi', 'Gohir.A11G179000' => 'ghi', 'Gohir.A12G140900' => 'ghi', 'Gohir.A12G140950' => 'ghi', 'Gohir.A12G191700' => 'ghi', 'Gohir.A13G086300' => 'ghi', 'Gohir.D07G052900' => 'ghi', 'Gohir.D11G186600' => 'ghi', 'Gohir.D12G145575' => 'ghi', 'Gohir.D12G145650' => 'ghi', 'Gohir.D12G145725' => 'ghi', 'Gohir.D12G194050' => 'ghi', 'Gohir.D13G091800' => 'ghi', 'Gorai.001G055900' => 'gra', 'Gorai.007G198400' => 'gra', 'Gorai.008G157000' => 'gra', 'Gorai.008G157100' => 'gra', 'Gorai.008G208700' => 'gra', 'Gorai.010G138700' => 'gra', 'GSVIVG01000977001' => 'vvi', 'GSVIVG01007708001' => 'vvi', 'GSVIVG01008587001' => 'vvi', 'GSVIVG01018849001' => 'vvi', 'GSVIVG01032432001' => 'vvi', 'HanXRQChr02g0034131' => 'han', 'HanXRQChr02g0035981' => 'han', 'HanXRQChr02g0035991' => 'han', 'HanXRQChr05g0155611' => 'han', 'HanXRQChr05g0155621' => 'han', 'HanXRQChr08g0236501' => 'han', 'HanXRQChr09g0261321' => 'han', 'HanXRQChr09g0272081' => 'han', 'HanXRQChr10g0310741' => 'han', 'HanXRQChr11g0325591' => 'han', 'HanXRQChr12g0385691' => 'han', 'HanXRQChr13g0387801' => 'han', 'HanXRQChr15g0463011' => 'han', 'Haze_03826' => 'cav', 'Haze_03827' => 'cav', 'Haze_07183' => 'cav', 'Haze_07537' => 'cav', 'Haze_07539' => 'cav', 'Haze_12461' => 'cav', 'Haze_16115' => 'cav', 'Haze_16808' => 'cav', 'Haze_18531' => 'cav', 'Hma1.2p1_0046F.1_g026700' => 'hma', 'Hma1.2p1_0046F.1_g026710' => 'hma', 'Hma1.2p1_0168F.1_g074340' => 'hma', 'Hma1.2p1_0266F.1_g107030' => 'hma', 'Hma1.2p1_0266F.1_g107060' => 'hma', 'Hma1.2p1_0275F.1_g110510' => 'hma', 'Hma1.2p1_0592F.1_g185490' => 'hma', 'Hma1.2p1_0592F.1_g185500' => 'hma', 'Hma1.2p1_0592F.1_g185510' => 'hma', 'Hma1.2p1_0592F.1_g185520' => 'hma', 'Hma1.2p1_0592F.1_g185530' => 'hma', 'Hma1.2p1_0818F.1_g223450' => 'hma', 'HPP92_009708' => 'vpl', 'HPP92_009793' => 'vpl', 'HPP92_009796' => 'vpl', 'HPP92_009797' => 'vpl', 'HPP92_014940' => 'vpl', 'HPP92_014988' => 'vpl', 'Hund02463' => 'sun', 'Hund02760' => 'sun', 'Hund05071' => 'sun', 'Hund10108' => 'sun', 'Hund11204' => 'sun', 'Hund14016' => 'sun', 'Hund16464' => 'sun', 'Lalb_Chr09g0333391' => 'lal', 'Lalb_Chr11g0070461' => 'lal', 'Lalb_Chr12g0201671' => 'lal', 'Lalb_Chr13g0297161' => 'lal', 'Lj1g0002823' => 'lja', 'Lj3C1074T6' => 'lonja', 'Lj4A212T28' => 'lonja', 'Lj4g0005516' => 'lja', 'Lj4g0013705' => 'lja', 'Lj4g0027865' => 'lja', 'Lj5C92G16' => 'lonja', 'Lj5C92T12' => 'lonja', 'Lj7C596T3' => 'lonja', 'Lj9A446G59' => 'lonja', 'Lj9A482G21' => 'lonja', 'Lsat_1_v5_gn_1_28261' => 'lsa', 'Lsat_1_v5_gn_1_28281' => 'lsa', 'Lsat_1_v5_gn_1_32721' => 'lsa', 'Lsat_1_v5_gn_4_151760' => 'lsa', 'Lsat_1_v5_gn_4_2120' => 'lsa', 'Lsat_1_v5_gn_4_75761' => 'lsa', 'Lsat_1_v5_gn_5_10920' => 'lsa', 'Manes.02G099900' => 'mes', 'Manes.11G096200' => 'mes', 'Manes.12G007200' => 'mes', 'Manes.14G048300' => 'mes', 'Manes.17G114700' => 'mes', 'Mapoly0002s0070' => 'mpo', 'Mapoly0029s0099' => 'mpo', 'MBI07_g24742_MAGBIO' => 'mbi', 'MBI10_g27988_MAGBIO' => 'mbi', 'MBI11_g13057_MAGBIO' => 'mbi', 'MD02G1137200' => 'mdo', 'MD06G1137200' => 'mdo', 'MD07G1122300' => 'mdo', 'MD09G1078200' => 'mdo', 'MD13G1123700' => 'mdo', 'MD14G1151900' => 'mdo', 'MD17G1030900' => 'mdo', 'MD17G1068200' => 'mdo', 'MD17G1068600' => 'mdo', 'Medtr3g077540' => 'mtr', 'Medtr4g105530' => 'mtr', 'Medtr8g076580' => 'mtr', 'Medtr8g076590' => 'mtr', 'Medtr8g096410' => 'mtr', 'MELO3C016411.2' => 'cme', 'MELO3C017780.2' => 'cme', 'MELO3C022560.2' => 'cme', 'MELO3C026187.2' => 'cme', 'MELO3C026286.2' => 'cme', 'MELO3C032854.2' => 'cme', 'Migut.H02495' => 'egut', 'Migut.I00561' => 'egut', 'Migut.K01015' => 'egut', 'Migut.K01016' => 'egut', 'Migut.L00743' => 'egut', 'Migut.L00744' => 'egut', 'Migut.L00746' => 'egut', 'Migut.L00798' => 'egut', 'Migut.L00799' => 'egut', 'Migut.N02096' => 'egut', 'MSTRG.11259' => 'ama', 'MSTRG.23142' => 'ama', 'MSTRG.2499' => 'ama', 'Nitab4.5_0000003g0730' => 'nta', 'Nitab4.5_0000137g0020' => 'nta', 'Nitab4.5_0000721g0210' => 'nta', 'Nitab4.5_0000723g0050' => 'nta', 'Nitab4.5_0000913g0070' => 'nta', 'Nitab4.5_0001332g0040' => 'nta', 'Nitab4.5_0001771g0050' => 'nta', 'Nitab4.5_0001918g0050' => 'nta', 'Nitab4.5_0002686g0030' => 'nta', 'Nitab4.5_0003156g0020' => 'nta', 'Nitab4.5_0003383g0040' => 'nta', 'Nitab4.5_0003918g0010' => 'nta', 'Nitab4.5_0006760g0010' => 'nta', 'Nn1g05981' => 'nnu', 'Nn1g06288' => 'nnu', 'Nn3g16371' => 'nnu', 'Nn3g16786' => 'nnu', 'Nn4g22232' => 'nnu', 'Oeu005144.1' => 'oeu', 'Oeu005145.1' => 'oeu', 'Oeu011348.1' => 'oeu', 'Oeu016415.1' => 'oeu', 'Oeu023501.1' => 'oeu', 'Oeu044473.1' => 'oeu', 'Oeu048892.2' => 'oeu', 'Os01g0549200' => 'osa', 'Os02g0469300' => 'osa', 'Os04g0311100' => 'osa', 'Os06g0474900' => 'osa', 'Os10g0181700' => 'osa', 'Os11g0454800' => 'osa', 'Peaxi162Scf00037g00714' => 'pax', 'Peaxi162Scf00084g01217' => 'pax', 'Peaxi162Scf00257g00217' => 'pax', 'Peaxi162Scf00516g00215' => 'pax', 'Peaxi162Scf00689g00123' => 'pax', 'PGR044G2719' => 'pgr', 'PGR083G1360' => 'pgr', 'PGR102G2849' => 'pgr', 'PGR119G2534' => 'pgr', 'PGSC0003DMG400003538' => 'stu', 'PGSC0003DMG400028138' => 'stu', 'PGSC0003DMG400031732' => 'stu', 'PGSC0003DMG400038165' => 'stu', 'Phvul.002G284600' => 'pvu', 'Phvul.003G258200' => 'pvu', 'Phvul.009G176500' => 'pvu', 'Potri.003G167201' => 'ptr', 'Potri.005G118400' => 'ptr', 'Potri.012G089000' => 'ptr', 'Potri.012G102800' => 'ptr', 'Potri.015G079400' => 'ptr', 'Potri.015G100900' => 'ptr', 'Pp3c14_9810' => 'ppa', 'Pp3c15_10450' => 'ppa', 'Pp3c20_19150' => 'ppa', 'Pp3c23_12740' => 'ppa', 'Pp3c23_6310' => 'ppa', 'Pp3c24_3720' => 'ppa', 'Pp3c27_2580' => 'ppa', 'Pp3c9_8990' => 'ppa', 'PRCOL_00002854' => 'pco', 'Prupe.1G221200' => 'ppe', 'Prupe.3G289000' => 'ppe', 'Prupe.5G147000' => 'ppe', 'Prupe.6G157300' => 'ppe', 'Prupe.7G163400' => 'ppe', 'Psat0s2177g0040' => 'psa', 'Psat3g174760' => 'psa', 'Psat3g192160' => 'psa', 'Psat4g058520' => 'psa', 'Psat4g096840' => 'psa', 'Psat7g037320' => 'psa', 'PSO017G1274' => 'pso', 'PSO017G5166' => 'pso', 'PSO063G4558' => 'pso', 'PSO170G4458' => 'pso', 'PSO170G5005' => 'pso', 'PSO210G6156' => 'pso', 'PSO210G6635' => 'pso', 'PSO210G7397' => 'pso', 'PSO210G7700' => 'pso', 'PSO455G0035' => 'pso', 'PSO455G0180' => 'pso', 'PSO478G4515' => 'pso', 'PSO832G1305' => 'pso', 'PSO832G3489' => 'pso', 'QL02p075247' => 'qlo', 'QL03p051148' => 'qlo', 'QL05p010313' => 'qlo', 'QL06p034627' => 'qlo', 'QL10p001889' => 'qlo', 'QL10p010846' => 'qlo', 'RcHm_v2.0_Chr1g0350621' => 'rch', 'RcHm_v2.0_Chr1g0350641' => 'rch', 'RcHm_v2.0_Chr2g0092891' => 'rch', 'RcHm_v2.0_Chr2g0100251' => 'rch', 'RcHm_v2.0_Chr2g0158661' => 'rch', 'RcHm_v2.0_Chr2g0172741' => 'rch', 'RcHm_v2.0_Chr4g0429571' => 'rch', 'RcHm_v2.0_Chr5g0042471' => 'rch', 'RcHm_v2.0_Chr7g0189451' => 'rch', 'Rhsim08G0052000' => 'rsi', 'Rhsim08G0174400' => 'rsi', 'Rhsim08G0193200' => 'rsi', 'Rhsim10G0214800' => 'rsi', 'Rhsim10G0214900' => 'rsi', 'Rhsim10G0215000' => 'rsi', 'Rhsim12G0022900' => 'rsi', 'Rhsim12G0177500' => 'rsi', 'Rhsim12G0177700' => 'rsi', 'Sabra03G0122600' => 'sbr', 'Sabra05G0097400' => 'sbr', 'Sabra12G0064100' => 'sbr', 'Sabra15G0121300' => 'sbr', 'SalBow2G0642' => 'sbo', 'SalBow5G2667' => 'sbo', 'SalBow5G4873' => 'sbo', 'SalBow8G2395' => 'sbo', 'Sc03g0003290' => 'sci', 'Sc10g0010130' => 'sci', 'Sc22g0003650' => 'sci', 'Sed0001603' => 'sed', 'Sed0004259' => 'sed', 'Sed0006789' => 'sed', 'Sed0011838' => 'sed', 'Sed0012964' => 'sed', 'Sed0016383' => 'sed', 'Sed0019010' => 'sed', 'Sed0020188' => 'sed', 'SEGI_04702' => 'sgi', 'SEGI_17231' => 'sgi', 'SEGI_18877' => 'sgi', 'SEGI_25196' => 'sgi', 'SEGI_25515' => 'sgi', 'SEGI_28445' => 'sgi', 'SEGI_37452' => 'sgi', 'SGA_v2.0_scaffold188G40336' => 'sas', 'SGA_v2.0_scaffold228G43247' => 'sas', 'SGA_v2.0_scaffold280G46853' => 'sas', 'SGA_v2.0_scaffold34G13808' => 'sas', 'SGA_v2.0_scaffold40G15576' => 'sas', 'SGA_v2.0_scaffold611G53188' => 'sas', 'SGA_v2.0_scaffold78G25461' => 'sas', 'SGA_v2.0_scaffold90G27888' => 'sas', 'SHI08601' => 'shi', 'SHI08606' => 'shi', 'SHI17117' => 'shi', 'SHI17119' => 'shi', 'SMO118G0201' => 'smo', 'SMO169G0247' => 'smo', 'SMO176G0006' => 'smo', 'SMO176G0015' => 'smo', 'SMO202G0006' => 'smo', 'SMO240G0050' => 'smo', 'SMO286G0009' => 'smo', 'SMO338G0033' => 'smo', 'SMO356G0533' => 'smo', 'SMO364G0382' => 'smo', 'SMO367G0166' => 'smo', 'SMO367G1098' => 'smo', 'Solyc01g009920.3' => 'sly', 'Solyc01g099300.3' => 'sly', 'Solyc02g084700.3' => 'sly', 'Solyc03g097520.3' => 'sly', 'Solyc06g071580.3' => 'sly', 'Solyc10g081760.3' => 'sly', 'Sopen01g005480' => 'spe', 'Sopen01g042850' => 'spe', 'Sopen02g029370' => 'spe', 'Sopen03g028280' => 'spe', 'Sopen06g027870' => 'spe', 'Sopen10g032270' => 'spe', 'Sp5g18180' => 'spa', 'Sp6g12880' => 'spa', 'Sp6g30850' => 'spa', 'Sp7g22960' => 'spa', 'Sp7g34010' => 'spa', 'SpUn1326_0010' => 'spa', 'TAR371G0242' => 'tar', 'TAR622G0638' => 'tar', 'TAR628G1548' => 'tar', 'TAR629G1079' => 'tar', 'TAR629G3413' => 'tar', 'THA.LOC104804249' => 'tha', 'THA.LOC104808315' => 'tha', 'THA.LOC104809238' => 'tha', 'THA.LOC104825484' => 'tha', 'Thecc.01G025500' => 'tca', 'Thecc.03G015800' => 'tca', 'Thecc.03G018000' => 'tca', 'Thecc.03G134800' => 'tca', 'Thecc.04G014700' => 'tca', 'Thhalv10006991m.g' => 'esa', 'Thhalv10012707m.g' => 'esa', 'Thhalv10015739m.g' => 'esa', 'Thhalv10024553m.g' => 'esa', 'Thhalv10024673m.g' => 'esa', 'Thhalv10029187m.g' => 'esa', 'TPR.G12971' => 'tpr', 'TPR.G29396' => 'tpr', 'TPR.G33376' => 'tpr', 'TPR.G35508' => 'tpr', 'TPR.G35516' => 'tpr', 'TPR.G37317' => 'tpr', 'TPR.G37389' => 'tpr', 'TPR.G37523' => 'tpr', 'TPR.G559' => 'tpr', 'TWI14G0070' => 'twi', 'TWI14G0729' => 'twi', 'TWI18G0596' => 'twi', 'TWI39G0780' => 'twi', 'TWI39G0850' => 'twi', 'TWI73G1052' => 'twi', 'unitig_52.g17485' => 'ugi', 'unitig_61.g26355' => 'ugi', 'vmacro01040' => 'vma', 'vmacro16731' => 'vma', 'vmacro18270' => 'vma', 'vmacro19142' => 'vma', 'vmacro19407' => 'vma', 'vmacro19408' => 'vma', 'vmacro21899' => 'vma', 'vmacro21900' => 'vma', 'vmacro21901' => 'vma', 'VMungo0251G0490' => 'vmu', 'VMungo0251G1748' => 'vmu', 'VMungo1309G0421' => 'vmu', 'Zm00001eb086500' => 'zma', 'Zm00001eb150680' => 'zma', 'Zm00001eb162330' => 'zma', 'Zm00001eb203130' => 'zma', 'Zm00001eb369480' => 'zma', 'Zm00001eb382340' => 'zma', 'Zm00001eb416360' => 'zma' ) $gf_id = 'HOM05D000902' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000902' ) $data_identifier = 'HOM05D000902' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 13, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 10, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 6, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 9, 'hma' => (int) 12, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 4, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 6, 'ppa' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 6, 'rch' => (int) 9, 'rsi' => (int) 9, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 12, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 3, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416360' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000902', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '663', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02470' => 'bna', 'A01p16260' => 'bna', 'A02p01680' => 'bna', 'A03p16600' => 'bna', 'A03p55660' => 'bna', 'A03p64160' => 'bna', 'A03p64170' => 'bna', 'A08p31900' => 'bna', 'A09p59530' => 'bna', 'A10p08230' => 'bna', 'A10p25090' => 'bna', 'Aa31LG3G7100' => 'aar', 'Aa31LG3G7110' => 'aar', 'Aa31LG6G13160' => 'aar', 'Aa31LG7G10770' => 'aar', 'Aa31LG7G3830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2723' => 'aag', 'Actinidia08045' => 'ach', 'Actinidia08888' => 'ach', 'Actinidia18333' => 'ach', 'Actinidia19334' => 'ach', 'Actinidia25552' => 'ach', 'Actinidia26089' => 'ach', 'Actinidia30615' => 'ach', 'Actinidia30616' => 'ach', 'Actinidia33083' => 'ach', 'Actinidia35762' => 'ach', 'Ah.02g110620' => 'amhyb', 'Ah.11g046390' => 'amhyb', 'AL1G31670' => 'aly', 'AL6G23730' => 'aly', 'AL7G14740' => 'aly', 'AL7G14750' => 'aly', 'AL7G14760' => 'aly', 'AL7G28220' => 'aly', 'AL8G24940' => 'aly', 'Aqoxy3G01665' => 'aox', 'Aqoxy3G02853' => 'aox', 'Aqoxy5G01513' => 'aox', 'Aqoxy5G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8SKA4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ75LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKDA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0LJZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7REX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZP4YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWX7I5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2QKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS0L9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPCD8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q161UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC7XCF' => 'arhy', 'AT1G19100' => 'ath', 'AT4G24970' => 'ath', 'AT4G36270' => 'ath', 'AT4G36280' => 'ath', 'AT4G36290' => 'ath', 'AT5G13130' => 'ath', 'AT5G50780' => 'ath', 'ATR0582G266' => 'atr', 'ATR0661G195' => 'atr', 'ATR1152G031' => 'atr', 'Atru.chr11.2382' => 'acertr', 'Atru.chr12.2337' => 'acertr', 'Atru.chr3.744' => 'acertr', 'Atru.chr6.1870' => 'acertr', 'Atru.chr9.2515' => 'acertr', 'AUR62004120' => 'cqu', 'AUR62005667' => 'cqu', 'AUR62007634' => 'cqu', 'AUR62008186' => 'cqu', 'AUR62008187' => 'cqu', 'AUR62008188' => 'cqu', 'AUR62027954' => 'cqu', 'AUR62028766' => 'cqu', 'AUR62028767' => 'cqu', 'AUR62028768' => 'cqu', 'AUR62028886' => 'cqu', 'AUR62029563' => 'cqu', 'AUR62038832' => 'cqu', 'BcaB01g04149' => 'bca', 'BcaB03g12940' => 'bca', 'BcaB03g13090' => 'bca', 'BcaB03g14466' => 'bca', 'BcaB05g24035' => 'bca', 'BcaC01g06050' => 'bca', 'BcaC04g19148' => 'bca', 'BcaC04g20761' => 'bca', 'BcaC06g32845' => 'bca', 'BcaC07g41274' => 'bca', 'BcaC09g50827' => 'bca', 'BcaNung00741' => 'bca', 'BcaNung00742' => 'bca', 'BcaNung01859' => 'bca', 'BcaNung03985' => 'bca', 'BcaNung03989' => 'bca', 'BcaNung05661' => 'bca', 'BolC1t00257H' => 'bol', 'BolC1t01956H' => 'bol', 'BolC2t06534H' => 'bol', 'BolC3t14334H' => 'bol', 'BolC5t30451H' => 'bol', 'BolC7t45880H' => 'bol', 'BolC7t46586H' => 'bol', 'BolC8t49301H' => 'bol', 'BolC8t51837H' => 'bol', 'BolC9t56822H' => 'bol', 'BolC9t59235H' => 'bol', 'BraA01t00234Z' => 'bra', 'BraA01t01563Z' => 'bra', 'BraA02t05147Z' => 'bra', 'BraA03t10947Z' => 'bra', 'BraA03t14633Z' => 'bra', 'BraA08t35112Z' => 'bra', 'BraA09t41330Z' => 'bra', 'BraA10t44570Z' => 'bra', 'C01p02670' => 'bna', 'C01p20260' => 'bna', 'C02p05890' => 'bna', 'C03p19530' => 'bna', 'C05p17470' => 'bna', 'C07p53900' => 'bna', 'C07p61630' => 'bna', 'C08p16800' => 'bna', 'C08p42810' => 'bna', 'C09p39480' => 'bna', 'C09p63980' => 'bna', 'CAN.G1001.7' => 'can', 'CAN.G1034.55' => 'can', 'CAN.G143.7' => 'can', 'CAN.G3340.1' => 'can', 'CAN.G358.19' => 'can', 'CAN.G373.2' => 'can', 'CAN.G674.16' => 'can', 'CAN.G674.17' => 'can', 'CAN.G674.18' => 'can', 'CAN.G732.2' => 'can', 'CAN.G732.3' => 'can', 'CAN.G993.39' => 'can', 'CANSAT01G2052' => 'cansat', 'CANSAT80G0070' => 'cansat', 'CANSAT80G0483' => 'cansat', 'CANSAT80G0625' => 'cansat', 'CARHR019690' => 'chi', 'CARHR080280' => 'chi', 'CARHR152750' => 'chi', 'CARHR152760' => 'chi', 'CARHR152770' => 'chi', 'CARHR200340' => 'chi', 'CARHR232370' => 'chi', 'CARHR244670' => 'chi', 'CARHR244680' => 'chi', 'CARHR257520' => 'chi', 'Carub.0001s1872' => 'cru', 'Carub.0006s1130' => 'cru', 'Carub.0007s0396' => 'cru', 'Carub.0007s0397' => 'cru', 'Carub.0007s1608' => 'cru', 'Carub.0008s1068' => 'cru', 'Carub.0008s1077' => 'cru', 'Ca_16158_v3' => 'car', 'Ca_17571_v3' => 'car', 'Ca_21936_v3' => 'car', 'Ca_22350_v3' => 'car', 'CBR_g22445' => 'cbr', 'CBR_g26290' => 'cbr', 'Cc04_g09610' => 'ccan', 'Cc04_g12280' => 'ccan', 'Cc07_g10230' => 'ccan', 'CDE02G0093' => 'cde', 'CDE02G0701' => 'cde', 'CDE04G1050' => 'cde', 'CDE05G1833' => 'cde', 'CDE05G3058' => 'cde', 'CDE05G3380' => 'cde', 'CDE06G0536' => 'cde', 'Cfa006923' => 'cfa', 'Cfa009402' => 'cfa', 'Cfa018751' => 'cfa', 'Cfa019164' => 'cfa', 'Cfa022935' => 'cfa', 'Ciclev10019081m.g' => 'ccl', 'Ciclev10025076m.g' => 'ccl', 'Ciclev10030712m.g' => 'ccl', 'Ciclev10033760m.g' => 'ccl', 'CiPaw.05G105600' => 'cil', 'CiPaw.08G136700' => 'cil', 'CiPaw.11G003900' => 'cil', 'CiPaw.11G023700' => 'cil', 'CiPaw.12G003700' => 'cil', 'ClCG06G017100' => 'cla', 'ClCG06G018110' => 'cla', 'ClCG07G008800' => 'cla', 'ClCG07G015330' => 'cla', 'COL.COLO4_13698' => 'col', 'COL.COLO4_16659' => 'col', 'COL.COLO4_21986' => 'col', 'COL.COLO4_24049' => 'col', 'COL.COLO4_29061' => 'col', 'COL.COLO4_29075' => 'col', 'COL.COLO4_30094' => 'col', 'Cpa.g.c33689' => 'cpa', 'Cpa.g.sc108.39' => 'cpa', 'Cpa.g.sc108.41' => 'cpa', 'Cpa.g.sc1163.1' => 'cpa', 'Cpa.g.sc4.155' => 'cpa', 'Cpa.g.sc6.194' => 'cpa', 'CsaV3_1G000340' => 'csa', 'CsaV3_1G001400' => 'csa', 'CsaV3_4G002220' => 'csa', 'CsaV3_4G005370' => 'csa', 'CSS0007487' => 'camsi', 'CSS0008066' => 'camsi', 'CSS0009120' => 'camsi', 'CSS0015512' => 'camsi', 'CSS0022409' => 'camsi', 'CSS0025358' => 'camsi', 'CSS0044547' => 'camsi', 'DCAR_013057' => 'dca', 'DCAR_015058' => 'dca', 'DCAR_016027' => 'dca', 'DCAR_017327' => 'dca', 'DCAR_020743' => 'dca', 'DCAR_026157' => 'dca', 'DCAR_032339' => 'dca', 'DCAR_032340' => 'dca', 'Dinv11200' => 'din', 'Dinv11201' => 'din', 'Dinv20631' => 'din', 'Dinv23182' => 'din', 'Dinv33466' => 'din', 'Dinv33583' => 'din', 'Dinv38565' => 'din', 'Duzib068G0200' => 'dzi', 'Duzib147G0132' => 'dzi', 'Duzib147G0635' => 'dzi', 'Duzib205G1670' => 'dzi', 'Duzib251G0606' => 'dzi', 'ECA232G3336' => 'eca', 'ECA232G3763' => 'eca', 'ECA232G4845' => 'eca', 'ECA234G1607' => 'eca', 'ECA246G0932' => 'eca', 'ECA247G0781' => 'eca', 'ECA247G1932' => 'eca', 'ECA247G2079' => 'eca', 'ECA247G3338' => 'eca', 'ECA247G4115' => 'eca', 'EL10Ac3g06552' => 'bvu', 'EL10Ac5g10721' => 'bvu', 'EL10Ac5g10722' => 'bvu', 'EL10Ac5g10723' => 'bvu', 'EL10Ac5g11361' => 'bvu', 'EL10Ac6g13553' => 'bvu', 'EL10As8g23872' => 'bvu', 'Eucgr.B00250' => 'egr', 'Eucgr.B00251' => 'egr', 'Eucgr.B03533' => 'egr', 'Eucgr.I02381' => 'egr', 'Eucgr.K02700' => 'egr', 'FAN02G0174' => 'fan', 'FAN02G3146' => 'fan', 'FAN04G1672' => 'fan', 'FAN04G2273' => 'fan', 'FAN05G2791' => 'fan', 'FAN05G4035' => 'fan', 'FAN07G0834' => 'fan', 'FAN08G1198' => 'fan', 'FAN09G4182' => 'fan', 'FAN12G0496' => 'fan', 'FAN13G1027' => 'fan', 'FAN13G2951' => 'fan', 'FAN14G0705' => 'fan', 'FAN14G0720' => 'fan', 'FAN17G0201' => 'fan', 'FAN17G2665' => 'fan', 'FAN18G1456' => 'fan', 'FAN18G1525' => 'fan', 'FAN18G3500' => 'fan', 'FAN28G2670' => 'fan', 'FvH4_1g12391' => 'fve', 'FvH4_4g23220' => 'fve', 'FvH4_5g08810' => 'fve', 'FvH4_5g28960' => 'fve', 'FvH4_6g42820' => 'fve', 'FvH4_6g51110' => 'fve', 'Glyma.02G051802' => 'gma', 'Glyma.04G185300' => 'gma', 'Glyma.05G202900' => 'gma', 'Glyma.08G010300' => 'gma', 'Glyma.16G131900' => 'gma', 'Glyma.17G087900' => 'gma', 'Gohir.A07G048600' => 'ghi', 'Gohir.A11G179000' => 'ghi', 'Gohir.A12G140900' => 'ghi', 'Gohir.A12G140950' => 'ghi', 'Gohir.A12G191700' => 'ghi', 'Gohir.A13G086300' => 'ghi', 'Gohir.D07G052900' => 'ghi', 'Gohir.D11G186600' => 'ghi', 'Gohir.D12G145575' => 'ghi', 'Gohir.D12G145650' => 'ghi', 'Gohir.D12G145725' => 'ghi', 'Gohir.D12G194050' => 'ghi', 'Gohir.D13G091800' => 'ghi', 'Gorai.001G055900' => 'gra', 'Gorai.007G198400' => 'gra', 'Gorai.008G157000' => 'gra', 'Gorai.008G157100' => 'gra', 'Gorai.008G208700' => 'gra', 'Gorai.010G138700' => 'gra', 'GSVIVG01000977001' => 'vvi', 'GSVIVG01007708001' => 'vvi', 'GSVIVG01008587001' => 'vvi', 'GSVIVG01018849001' => 'vvi', 'GSVIVG01032432001' => 'vvi', 'HanXRQChr02g0034131' => 'han', 'HanXRQChr02g0035981' => 'han', 'HanXRQChr02g0035991' => 'han', 'HanXRQChr05g0155611' => 'han', 'HanXRQChr05g0155621' => 'han', 'HanXRQChr08g0236501' => 'han', 'HanXRQChr09g0261321' => 'han', 'HanXRQChr09g0272081' => 'han', 'HanXRQChr10g0310741' => 'han', 'HanXRQChr11g0325591' => 'han', 'HanXRQChr12g0385691' => 'han', 'HanXRQChr13g0387801' => 'han', 'HanXRQChr15g0463011' => 'han', 'Haze_03826' => 'cav', 'Haze_03827' => 'cav', 'Haze_07183' => 'cav', 'Haze_07537' => 'cav', 'Haze_07539' => 'cav', 'Haze_12461' => 'cav', 'Haze_16115' => 'cav', 'Haze_16808' => 'cav', 'Haze_18531' => 'cav', 'Hma1.2p1_0046F.1_g026700' => 'hma', 'Hma1.2p1_0046F.1_g026710' => 'hma', 'Hma1.2p1_0168F.1_g074340' => 'hma', 'Hma1.2p1_0266F.1_g107030' => 'hma', 'Hma1.2p1_0266F.1_g107060' => 'hma', 'Hma1.2p1_0275F.1_g110510' => 'hma', 'Hma1.2p1_0592F.1_g185490' => 'hma', 'Hma1.2p1_0592F.1_g185500' => 'hma', 'Hma1.2p1_0592F.1_g185510' => 'hma', 'Hma1.2p1_0592F.1_g185520' => 'hma', 'Hma1.2p1_0592F.1_g185530' => 'hma', 'Hma1.2p1_0818F.1_g223450' => 'hma', 'HPP92_009708' => 'vpl', 'HPP92_009793' => 'vpl', 'HPP92_009796' => 'vpl', 'HPP92_009797' => 'vpl', 'HPP92_014940' => 'vpl', 'HPP92_014988' => 'vpl', 'Hund02463' => 'sun', 'Hund02760' => 'sun', 'Hund05071' => 'sun', 'Hund10108' => 'sun', 'Hund11204' => 'sun', 'Hund14016' => 'sun', 'Hund16464' => 'sun', 'Lalb_Chr09g0333391' => 'lal', 'Lalb_Chr11g0070461' => 'lal', 'Lalb_Chr12g0201671' => 'lal', 'Lalb_Chr13g0297161' => 'lal', 'Lj1g0002823' => 'lja', 'Lj3C1074T6' => 'lonja', 'Lj4A212T28' => 'lonja', 'Lj4g0005516' => 'lja', 'Lj4g0013705' => 'lja', 'Lj4g0027865' => 'lja', 'Lj5C92G16' => 'lonja', 'Lj5C92T12' => 'lonja', 'Lj7C596T3' => 'lonja', 'Lj9A446G59' => 'lonja', 'Lj9A482G21' => 'lonja', 'Lsat_1_v5_gn_1_28261' => 'lsa', 'Lsat_1_v5_gn_1_28281' => 'lsa', 'Lsat_1_v5_gn_1_32721' => 'lsa', 'Lsat_1_v5_gn_4_151760' => 'lsa', 'Lsat_1_v5_gn_4_2120' => 'lsa', 'Lsat_1_v5_gn_4_75761' => 'lsa', 'Lsat_1_v5_gn_5_10920' => 'lsa', 'Manes.02G099900' => 'mes', 'Manes.11G096200' => 'mes', 'Manes.12G007200' => 'mes', 'Manes.14G048300' => 'mes', 'Manes.17G114700' => 'mes', 'Mapoly0002s0070' => 'mpo', 'Mapoly0029s0099' => 'mpo', 'MBI07_g24742_MAGBIO' => 'mbi', 'MBI10_g27988_MAGBIO' => 'mbi', 'MBI11_g13057_MAGBIO' => 'mbi', 'MD02G1137200' => 'mdo', 'MD06G1137200' => 'mdo', 'MD07G1122300' => 'mdo', 'MD09G1078200' => 'mdo', 'MD13G1123700' => 'mdo', 'MD14G1151900' => 'mdo', 'MD17G1030900' => 'mdo', 'MD17G1068200' => 'mdo', 'MD17G1068600' => 'mdo', 'Medtr3g077540' => 'mtr', 'Medtr4g105530' => 'mtr', 'Medtr8g076580' => 'mtr', 'Medtr8g076590' => 'mtr', 'Medtr8g096410' => 'mtr', 'MELO3C016411.2' => 'cme', 'MELO3C017780.2' => 'cme', 'MELO3C022560.2' => 'cme', 'MELO3C026187.2' => 'cme', 'MELO3C026286.2' => 'cme', 'MELO3C032854.2' => 'cme', 'Migut.H02495' => 'egut', 'Migut.I00561' => 'egut', 'Migut.K01015' => 'egut', 'Migut.K01016' => 'egut', 'Migut.L00743' => 'egut', 'Migut.L00744' => 'egut', 'Migut.L00746' => 'egut', 'Migut.L00798' => 'egut', 'Migut.L00799' => 'egut', 'Migut.N02096' => 'egut', 'MSTRG.11259' => 'ama', 'MSTRG.23142' => 'ama', 'MSTRG.2499' => 'ama', 'Nitab4.5_0000003g0730' => 'nta', 'Nitab4.5_0000137g0020' => 'nta', 'Nitab4.5_0000721g0210' => 'nta', 'Nitab4.5_0000723g0050' => 'nta', 'Nitab4.5_0000913g0070' => 'nta', 'Nitab4.5_0001332g0040' => 'nta', 'Nitab4.5_0001771g0050' => 'nta', 'Nitab4.5_0001918g0050' => 'nta', 'Nitab4.5_0002686g0030' => 'nta', 'Nitab4.5_0003156g0020' => 'nta', 'Nitab4.5_0003383g0040' => 'nta', 'Nitab4.5_0003918g0010' => 'nta', 'Nitab4.5_0006760g0010' => 'nta', 'Nn1g05981' => 'nnu', 'Nn1g06288' => 'nnu', 'Nn3g16371' => 'nnu', 'Nn3g16786' => 'nnu', 'Nn4g22232' => 'nnu', 'Oeu005144.1' => 'oeu', 'Oeu005145.1' => 'oeu', 'Oeu011348.1' => 'oeu', 'Oeu016415.1' => 'oeu', 'Oeu023501.1' => 'oeu', 'Oeu044473.1' => 'oeu', 'Oeu048892.2' => 'oeu', 'Os01g0549200' => 'osa', 'Os02g0469300' => 'osa', 'Os04g0311100' => 'osa', 'Os06g0474900' => 'osa', 'Os10g0181700' => 'osa', 'Os11g0454800' => 'osa', 'Peaxi162Scf00037g00714' => 'pax', 'Peaxi162Scf00084g01217' => 'pax', 'Peaxi162Scf00257g00217' => 'pax', 'Peaxi162Scf00516g00215' => 'pax', 'Peaxi162Scf00689g00123' => 'pax', 'PGR044G2719' => 'pgr', 'PGR083G1360' => 'pgr', 'PGR102G2849' => 'pgr', 'PGR119G2534' => 'pgr', 'PGSC0003DMG400003538' => 'stu', 'PGSC0003DMG400028138' => 'stu', 'PGSC0003DMG400031732' => 'stu', 'PGSC0003DMG400038165' => 'stu', 'Phvul.002G284600' => 'pvu', 'Phvul.003G258200' => 'pvu', 'Phvul.009G176500' => 'pvu', 'Potri.003G167201' => 'ptr', 'Potri.005G118400' => 'ptr', 'Potri.012G089000' => 'ptr', 'Potri.012G102800' => 'ptr', 'Potri.015G079400' => 'ptr', 'Potri.015G100900' => 'ptr', 'Pp3c14_9810' => 'ppa', 'Pp3c15_10450' => 'ppa', 'Pp3c20_19150' => 'ppa', 'Pp3c23_12740' => 'ppa', 'Pp3c23_6310' => 'ppa', 'Pp3c24_3720' => 'ppa', 'Pp3c27_2580' => 'ppa', 'Pp3c9_8990' => 'ppa', 'PRCOL_00002854' => 'pco', 'Prupe.1G221200' => 'ppe', 'Prupe.3G289000' => 'ppe', 'Prupe.5G147000' => 'ppe', 'Prupe.6G157300' => 'ppe', 'Prupe.7G163400' => 'ppe', 'Psat0s2177g0040' => 'psa', 'Psat3g174760' => 'psa', 'Psat3g192160' => 'psa', 'Psat4g058520' => 'psa', 'Psat4g096840' => 'psa', 'Psat7g037320' => 'psa', 'PSO017G1274' => 'pso', 'PSO017G5166' => 'pso', 'PSO063G4558' => 'pso', 'PSO170G4458' => 'pso', 'PSO170G5005' => 'pso', 'PSO210G6156' => 'pso', 'PSO210G6635' => 'pso', 'PSO210G7397' => 'pso', 'PSO210G7700' => 'pso', 'PSO455G0035' => 'pso', 'PSO455G0180' => 'pso', 'PSO478G4515' => 'pso', 'PSO832G1305' => 'pso', 'PSO832G3489' => 'pso', 'QL02p075247' => 'qlo', 'QL03p051148' => 'qlo', 'QL05p010313' => 'qlo', 'QL06p034627' => 'qlo', 'QL10p001889' => 'qlo', 'QL10p010846' => 'qlo', 'RcHm_v2.0_Chr1g0350621' => 'rch', 'RcHm_v2.0_Chr1g0350641' => 'rch', 'RcHm_v2.0_Chr2g0092891' => 'rch', 'RcHm_v2.0_Chr2g0100251' => 'rch', 'RcHm_v2.0_Chr2g0158661' => 'rch', 'RcHm_v2.0_Chr2g0172741' => 'rch', 'RcHm_v2.0_Chr4g0429571' => 'rch', 'RcHm_v2.0_Chr5g0042471' => 'rch', 'RcHm_v2.0_Chr7g0189451' => 'rch', 'Rhsim08G0052000' => 'rsi', 'Rhsim08G0174400' => 'rsi', 'Rhsim08G0193200' => 'rsi', 'Rhsim10G0214800' => 'rsi', 'Rhsim10G0214900' => 'rsi', 'Rhsim10G0215000' => 'rsi', 'Rhsim12G0022900' => 'rsi', 'Rhsim12G0177500' => 'rsi', 'Rhsim12G0177700' => 'rsi', 'Sabra03G0122600' => 'sbr', 'Sabra05G0097400' => 'sbr', 'Sabra12G0064100' => 'sbr', 'Sabra15G0121300' => 'sbr', 'SalBow2G0642' => 'sbo', 'SalBow5G2667' => 'sbo', 'SalBow5G4873' => 'sbo', 'SalBow8G2395' => 'sbo', 'Sc03g0003290' => 'sci', 'Sc10g0010130' => 'sci', 'Sc22g0003650' => 'sci', 'Sed0001603' => 'sed', 'Sed0004259' => 'sed', 'Sed0006789' => 'sed', 'Sed0011838' => 'sed', 'Sed0012964' => 'sed', 'Sed0016383' => 'sed', 'Sed0019010' => 'sed', 'Sed0020188' => 'sed', 'SEGI_04702' => 'sgi', 'SEGI_17231' => 'sgi', 'SEGI_18877' => 'sgi', 'SEGI_25196' => 'sgi', 'SEGI_25515' => 'sgi', 'SEGI_28445' => 'sgi', 'SEGI_37452' => 'sgi', 'SGA_v2.0_scaffold188G40336' => 'sas', 'SGA_v2.0_scaffold228G43247' => 'sas', 'SGA_v2.0_scaffold280G46853' => 'sas', 'SGA_v2.0_scaffold34G13808' => 'sas', 'SGA_v2.0_scaffold40G15576' => 'sas', 'SGA_v2.0_scaffold611G53188' => 'sas', 'SGA_v2.0_scaffold78G25461' => 'sas', 'SGA_v2.0_scaffold90G27888' => 'sas', 'SHI08601' => 'shi', 'SHI08606' => 'shi', 'SHI17117' => 'shi', 'SHI17119' => 'shi', 'SMO118G0201' => 'smo', 'SMO169G0247' => 'smo', 'SMO176G0006' => 'smo', 'SMO176G0015' => 'smo', 'SMO202G0006' => 'smo', 'SMO240G0050' => 'smo', 'SMO286G0009' => 'smo', 'SMO338G0033' => 'smo', 'SMO356G0533' => 'smo', 'SMO364G0382' => 'smo', 'SMO367G0166' => 'smo', 'SMO367G1098' => 'smo', 'Solyc01g009920.3' => 'sly', 'Solyc01g099300.3' => 'sly', 'Solyc02g084700.3' => 'sly', 'Solyc03g097520.3' => 'sly', 'Solyc06g071580.3' => 'sly', 'Solyc10g081760.3' => 'sly', 'Sopen01g005480' => 'spe', 'Sopen01g042850' => 'spe', 'Sopen02g029370' => 'spe', 'Sopen03g028280' => 'spe', 'Sopen06g027870' => 'spe', 'Sopen10g032270' => 'spe', 'Sp5g18180' => 'spa', 'Sp6g12880' => 'spa', 'Sp6g30850' => 'spa', 'Sp7g22960' => 'spa', 'Sp7g34010' => 'spa', 'SpUn1326_0010' => 'spa', 'TAR371G0242' => 'tar', 'TAR622G0638' => 'tar', 'TAR628G1548' => 'tar', 'TAR629G1079' => 'tar', 'TAR629G3413' => 'tar', 'THA.LOC104804249' => 'tha', 'THA.LOC104808315' => 'tha', 'THA.LOC104809238' => 'tha', 'THA.LOC104825484' => 'tha', 'Thecc.01G025500' => 'tca', 'Thecc.03G015800' => 'tca', 'Thecc.03G018000' => 'tca', 'Thecc.03G134800' => 'tca', 'Thecc.04G014700' => 'tca', 'Thhalv10006991m.g' => 'esa', 'Thhalv10012707m.g' => 'esa', 'Thhalv10015739m.g' => 'esa', 'Thhalv10024553m.g' => 'esa', 'Thhalv10024673m.g' => 'esa', 'Thhalv10029187m.g' => 'esa', 'TPR.G12971' => 'tpr', 'TPR.G29396' => 'tpr', 'TPR.G33376' => 'tpr', 'TPR.G35508' => 'tpr', 'TPR.G35516' => 'tpr', 'TPR.G37317' => 'tpr', 'TPR.G37389' => 'tpr', 'TPR.G37523' => 'tpr', 'TPR.G559' => 'tpr', 'TWI14G0070' => 'twi', 'TWI14G0729' => 'twi', 'TWI18G0596' => 'twi', 'TWI39G0780' => 'twi', 'TWI39G0850' => 'twi', 'TWI73G1052' => 'twi', 'unitig_52.g17485' => 'ugi', 'unitig_61.g26355' => 'ugi', 'vmacro01040' => 'vma', 'vmacro16731' => 'vma', 'vmacro18270' => 'vma', 'vmacro19142' => 'vma', 'vmacro19407' => 'vma', 'vmacro19408' => 'vma', 'vmacro21899' => 'vma', 'vmacro21900' => 'vma', 'vmacro21901' => 'vma', 'VMungo0251G0490' => 'vmu', 'VMungo0251G1748' => 'vmu', 'VMungo1309G0421' => 'vmu', 'Zm00001eb086500' => 'zma', 'Zm00001eb150680' => 'zma', 'Zm00001eb162330' => 'zma', 'Zm00001eb203130' => 'zma', 'Zm00001eb369480' => 'zma', 'Zm00001eb382340' => 'zma', 'Zm00001eb416360' => 'zma' ), 'gf_id' => 'HOM05D000902', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000902' ), 'data_identifier' => 'HOM05D000902', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000902', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '663', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02470' => 'bna', 'A01p16260' => 'bna', 'A02p01680' => 'bna', 'A03p16600' => 'bna', 'A03p55660' => 'bna', 'A03p64160' => 'bna', 'A03p64170' => 'bna', 'A08p31900' => 'bna', 'A09p59530' => 'bna', 'A10p08230' => 'bna', 'A10p25090' => 'bna', 'Aa31LG3G7100' => 'aar', 'Aa31LG3G7110' => 'aar', 'Aa31LG6G13160' => 'aar', 'Aa31LG7G10770' => 'aar', 'Aa31LG7G3830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2723' => 'aag', 'Actinidia08045' => 'ach', 'Actinidia08888' => 'ach', 'Actinidia18333' => 'ach', 'Actinidia19334' => 'ach', 'Actinidia25552' => 'ach', 'Actinidia26089' => 'ach', 'Actinidia30615' => 'ach', 'Actinidia30616' => 'ach', 'Actinidia33083' => 'ach', 'Actinidia35762' => 'ach', 'Ah.02g110620' => 'amhyb', 'Ah.11g046390' => 'amhyb', 'AL1G31670' => 'aly', 'AL6G23730' => 'aly', 'AL7G14740' => 'aly', 'AL7G14750' => 'aly', 'AL7G14760' => 'aly', 'AL7G28220' => 'aly', 'AL8G24940' => 'aly', 'Aqoxy3G01665' => 'aox', 'Aqoxy3G02853' => 'aox', 'Aqoxy5G01513' => 'aox', 'Aqoxy5G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8SKA4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ75LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKDA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0LJZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7REX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZP4YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWX7I5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2QKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS0L9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPCD8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q161UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC7XCF' => 'arhy', 'AT1G19100' => 'ath', 'AT4G24970' => 'ath', 'AT4G36270' => 'ath', 'AT4G36280' => 'ath', 'AT4G36290' => 'ath', 'AT5G13130' => 'ath', 'AT5G50780' => 'ath', 'ATR0582G266' => 'atr', 'ATR0661G195' => 'atr', 'ATR1152G031' => 'atr', 'Atru.chr11.2382' => 'acertr', 'Atru.chr12.2337' => 'acertr', 'Atru.chr3.744' => 'acertr', 'Atru.chr6.1870' => 'acertr', 'Atru.chr9.2515' => 'acertr', 'AUR62004120' => 'cqu', 'AUR62005667' => 'cqu', 'AUR62007634' => 'cqu', 'AUR62008186' => 'cqu', 'AUR62008187' => 'cqu', 'AUR62008188' => 'cqu', 'AUR62027954' => 'cqu', 'AUR62028766' => 'cqu', 'AUR62028767' => 'cqu', 'AUR62028768' => 'cqu', 'AUR62028886' => 'cqu', 'AUR62029563' => 'cqu', 'AUR62038832' => 'cqu', 'BcaB01g04149' => 'bca', 'BcaB03g12940' => 'bca', 'BcaB03g13090' => 'bca', 'BcaB03g14466' => 'bca', 'BcaB05g24035' => 'bca', 'BcaC01g06050' => 'bca', 'BcaC04g19148' => 'bca', 'BcaC04g20761' => 'bca', 'BcaC06g32845' => 'bca', 'BcaC07g41274' => 'bca', 'BcaC09g50827' => 'bca', 'BcaNung00741' => 'bca', 'BcaNung00742' => 'bca', 'BcaNung01859' => 'bca', 'BcaNung03985' => 'bca', 'BcaNung03989' => 'bca', 'BcaNung05661' => 'bca', 'BolC1t00257H' => 'bol', 'BolC1t01956H' => 'bol', 'BolC2t06534H' => 'bol', 'BolC3t14334H' => 'bol', 'BolC5t30451H' => 'bol', 'BolC7t45880H' => 'bol', 'BolC7t46586H' => 'bol', 'BolC8t49301H' => 'bol', 'BolC8t51837H' => 'bol', 'BolC9t56822H' => 'bol', 'BolC9t59235H' => 'bol', 'BraA01t00234Z' => 'bra', 'BraA01t01563Z' => 'bra', 'BraA02t05147Z' => 'bra', 'BraA03t10947Z' => 'bra', 'BraA03t14633Z' => 'bra', 'BraA08t35112Z' => 'bra', 'BraA09t41330Z' => 'bra', 'BraA10t44570Z' => 'bra', 'C01p02670' => 'bna', 'C01p20260' => 'bna', 'C02p05890' => 'bna', 'C03p19530' => 'bna', 'C05p17470' => 'bna', 'C07p53900' => 'bna', 'C07p61630' => 'bna', 'C08p16800' => 'bna', 'C08p42810' => 'bna', 'C09p39480' => 'bna', 'C09p63980' => 'bna', 'CAN.G1001.7' => 'can', 'CAN.G1034.55' => 'can', 'CAN.G143.7' => 'can', 'CAN.G3340.1' => 'can', 'CAN.G358.19' => 'can', 'CAN.G373.2' => 'can', 'CAN.G674.16' => 'can', 'CAN.G674.17' => 'can', 'CAN.G674.18' => 'can', 'CAN.G732.2' => 'can', 'CAN.G732.3' => 'can', 'CAN.G993.39' => 'can', 'CANSAT01G2052' => 'cansat', 'CANSAT80G0070' => 'cansat', 'CANSAT80G0483' => 'cansat', 'CANSAT80G0625' => 'cansat', 'CARHR019690' => 'chi', 'CARHR080280' => 'chi', 'CARHR152750' => 'chi', 'CARHR152760' => 'chi', 'CARHR152770' => 'chi', 'CARHR200340' => 'chi', 'CARHR232370' => 'chi', 'CARHR244670' => 'chi', 'CARHR244680' => 'chi', 'CARHR257520' => 'chi', 'Carub.0001s1872' => 'cru', 'Carub.0006s1130' => 'cru', 'Carub.0007s0396' => 'cru', 'Carub.0007s0397' => 'cru', 'Carub.0007s1608' => 'cru', 'Carub.0008s1068' => 'cru', 'Carub.0008s1077' => 'cru', 'Ca_16158_v3' => 'car', 'Ca_17571_v3' => 'car', 'Ca_21936_v3' => 'car', 'Ca_22350_v3' => 'car', 'CBR_g22445' => 'cbr', 'CBR_g26290' => 'cbr', 'Cc04_g09610' => 'ccan', 'Cc04_g12280' => 'ccan', 'Cc07_g10230' => 'ccan', 'CDE02G0093' => 'cde', 'CDE02G0701' => 'cde', 'CDE04G1050' => 'cde', 'CDE05G1833' => 'cde', 'CDE05G3058' => 'cde', 'CDE05G3380' => 'cde', 'CDE06G0536' => 'cde', 'Cfa006923' => 'cfa', 'Cfa009402' => 'cfa', 'Cfa018751' => 'cfa', 'Cfa019164' => 'cfa', 'Cfa022935' => 'cfa', 'Ciclev10019081m.g' => 'ccl', 'Ciclev10025076m.g' => 'ccl', 'Ciclev10030712m.g' => 'ccl', 'Ciclev10033760m.g' => 'ccl', 'CiPaw.05G105600' => 'cil', 'CiPaw.08G136700' => 'cil', 'CiPaw.11G003900' => 'cil', 'CiPaw.11G023700' => 'cil', 'CiPaw.12G003700' => 'cil', 'ClCG06G017100' => 'cla', 'ClCG06G018110' => 'cla', 'ClCG07G008800' => 'cla', 'ClCG07G015330' => 'cla', 'COL.COLO4_13698' => 'col', 'COL.COLO4_16659' => 'col', 'COL.COLO4_21986' => 'col', 'COL.COLO4_24049' => 'col', 'COL.COLO4_29061' => 'col', 'COL.COLO4_29075' => 'col', 'COL.COLO4_30094' => 'col', 'Cpa.g.c33689' => 'cpa', 'Cpa.g.sc108.39' => 'cpa', 'Cpa.g.sc108.41' => 'cpa', 'Cpa.g.sc1163.1' => 'cpa', 'Cpa.g.sc4.155' => 'cpa', 'Cpa.g.sc6.194' => 'cpa', 'CsaV3_1G000340' => 'csa', 'CsaV3_1G001400' => 'csa', 'CsaV3_4G002220' => 'csa', 'CsaV3_4G005370' => 'csa', 'CSS0007487' => 'camsi', 'CSS0008066' => 'camsi', 'CSS0009120' => 'camsi', 'CSS0015512' => 'camsi', 'CSS0022409' => 'camsi', 'CSS0025358' => 'camsi', 'CSS0044547' => 'camsi', 'DCAR_013057' => 'dca', 'DCAR_015058' => 'dca', 'DCAR_016027' => 'dca', 'DCAR_017327' => 'dca', 'DCAR_020743' => 'dca', 'DCAR_026157' => 'dca', 'DCAR_032339' => 'dca', 'DCAR_032340' => 'dca', 'Dinv11200' => 'din', 'Dinv11201' => 'din', 'Dinv20631' => 'din', 'Dinv23182' => 'din', 'Dinv33466' => 'din', 'Dinv33583' => 'din', 'Dinv38565' => 'din', 'Duzib068G0200' => 'dzi', 'Duzib147G0132' => 'dzi', 'Duzib147G0635' => 'dzi', 'Duzib205G1670' => 'dzi', 'Duzib251G0606' => 'dzi', 'ECA232G3336' => 'eca', 'ECA232G3763' => 'eca', 'ECA232G4845' => 'eca', 'ECA234G1607' => 'eca', 'ECA246G0932' => 'eca', 'ECA247G0781' => 'eca', 'ECA247G1932' => 'eca', 'ECA247G2079' => 'eca', 'ECA247G3338' => 'eca', 'ECA247G4115' => 'eca', 'EL10Ac3g06552' => 'bvu', 'EL10Ac5g10721' => 'bvu', 'EL10Ac5g10722' => 'bvu', 'EL10Ac5g10723' => 'bvu', 'EL10Ac5g11361' => 'bvu', 'EL10Ac6g13553' => 'bvu', 'EL10As8g23872' => 'bvu', 'Eucgr.B00250' => 'egr', 'Eucgr.B00251' => 'egr', 'Eucgr.B03533' => 'egr', 'Eucgr.I02381' => 'egr', 'Eucgr.K02700' => 'egr', 'FAN02G0174' => 'fan', 'FAN02G3146' => 'fan', 'FAN04G1672' => 'fan', 'FAN04G2273' => 'fan', 'FAN05G2791' => 'fan', 'FAN05G4035' => 'fan', 'FAN07G0834' => 'fan', 'FAN08G1198' => 'fan', 'FAN09G4182' => 'fan', 'FAN12G0496' => 'fan', 'FAN13G1027' => 'fan', 'FAN13G2951' => 'fan', 'FAN14G0705' => 'fan', 'FAN14G0720' => 'fan', 'FAN17G0201' => 'fan', 'FAN17G2665' => 'fan', 'FAN18G1456' => 'fan', 'FAN18G1525' => 'fan', 'FAN18G3500' => 'fan', 'FAN28G2670' => 'fan', 'FvH4_1g12391' => 'fve', 'FvH4_4g23220' => 'fve', 'FvH4_5g08810' => 'fve', 'FvH4_5g28960' => 'fve', 'FvH4_6g42820' => 'fve', 'FvH4_6g51110' => 'fve', 'Glyma.02G051802' => 'gma', 'Glyma.04G185300' => 'gma', 'Glyma.05G202900' => 'gma', 'Glyma.08G010300' => 'gma', 'Glyma.16G131900' => 'gma', 'Glyma.17G087900' => 'gma', 'Gohir.A07G048600' => 'ghi', 'Gohir.A11G179000' => 'ghi', 'Gohir.A12G140900' => 'ghi', 'Gohir.A12G140950' => 'ghi', 'Gohir.A12G191700' => 'ghi', 'Gohir.A13G086300' => 'ghi', 'Gohir.D07G052900' => 'ghi', 'Gohir.D11G186600' => 'ghi', 'Gohir.D12G145575' => 'ghi', 'Gohir.D12G145650' => 'ghi', 'Gohir.D12G145725' => 'ghi', 'Gohir.D12G194050' => 'ghi', 'Gohir.D13G091800' => 'ghi', 'Gorai.001G055900' => 'gra', 'Gorai.007G198400' => 'gra', 'Gorai.008G157000' => 'gra', 'Gorai.008G157100' => 'gra', 'Gorai.008G208700' => 'gra', 'Gorai.010G138700' => 'gra', 'GSVIVG01000977001' => 'vvi', 'GSVIVG01007708001' => 'vvi', 'GSVIVG01008587001' => 'vvi', 'GSVIVG01018849001' => 'vvi', 'GSVIVG01032432001' => 'vvi', 'HanXRQChr02g0034131' => 'han', 'HanXRQChr02g0035981' => 'han', 'HanXRQChr02g0035991' => 'han', 'HanXRQChr05g0155611' => 'han', 'HanXRQChr05g0155621' => 'han', 'HanXRQChr08g0236501' => 'han', 'HanXRQChr09g0261321' => 'han', 'HanXRQChr09g0272081' => 'han', 'HanXRQChr10g0310741' => 'han', 'HanXRQChr11g0325591' => 'han', 'HanXRQChr12g0385691' => 'han', 'HanXRQChr13g0387801' => 'han', 'HanXRQChr15g0463011' => 'han', 'Haze_03826' => 'cav', 'Haze_03827' => 'cav', 'Haze_07183' => 'cav', 'Haze_07537' => 'cav', 'Haze_07539' => 'cav', 'Haze_12461' => 'cav', 'Haze_16115' => 'cav', 'Haze_16808' => 'cav', 'Haze_18531' => 'cav', 'Hma1.2p1_0046F.1_g026700' => 'hma', 'Hma1.2p1_0046F.1_g026710' => 'hma', 'Hma1.2p1_0168F.1_g074340' => 'hma', 'Hma1.2p1_0266F.1_g107030' => 'hma', 'Hma1.2p1_0266F.1_g107060' => 'hma', 'Hma1.2p1_0275F.1_g110510' => 'hma', 'Hma1.2p1_0592F.1_g185490' => 'hma', 'Hma1.2p1_0592F.1_g185500' => 'hma', 'Hma1.2p1_0592F.1_g185510' => 'hma', 'Hma1.2p1_0592F.1_g185520' => 'hma', 'Hma1.2p1_0592F.1_g185530' => 'hma', 'Hma1.2p1_0818F.1_g223450' => 'hma', 'HPP92_009708' => 'vpl', 'HPP92_009793' => 'vpl', 'HPP92_009796' => 'vpl', 'HPP92_009797' => 'vpl', 'HPP92_014940' => 'vpl', 'HPP92_014988' => 'vpl', 'Hund02463' => 'sun', 'Hund02760' => 'sun', 'Hund05071' => 'sun', 'Hund10108' => 'sun', 'Hund11204' => 'sun', 'Hund14016' => 'sun', 'Hund16464' => 'sun', 'Lalb_Chr09g0333391' => 'lal', 'Lalb_Chr11g0070461' => 'lal', 'Lalb_Chr12g0201671' => 'lal', 'Lalb_Chr13g0297161' => 'lal', 'Lj1g0002823' => 'lja', 'Lj3C1074T6' => 'lonja', 'Lj4A212T28' => 'lonja', 'Lj4g0005516' => 'lja', 'Lj4g0013705' => 'lja', 'Lj4g0027865' => 'lja', 'Lj5C92G16' => 'lonja', 'Lj5C92T12' => 'lonja', 'Lj7C596T3' => 'lonja', 'Lj9A446G59' => 'lonja', 'Lj9A482G21' => 'lonja', 'Lsat_1_v5_gn_1_28261' => 'lsa', 'Lsat_1_v5_gn_1_28281' => 'lsa', 'Lsat_1_v5_gn_1_32721' => 'lsa', 'Lsat_1_v5_gn_4_151760' => 'lsa', 'Lsat_1_v5_gn_4_2120' => 'lsa', 'Lsat_1_v5_gn_4_75761' => 'lsa', 'Lsat_1_v5_gn_5_10920' => 'lsa', 'Manes.02G099900' => 'mes', 'Manes.11G096200' => 'mes', 'Manes.12G007200' => 'mes', 'Manes.14G048300' => 'mes', 'Manes.17G114700' => 'mes', 'Mapoly0002s0070' => 'mpo', 'Mapoly0029s0099' => 'mpo', 'MBI07_g24742_MAGBIO' => 'mbi', 'MBI10_g27988_MAGBIO' => 'mbi', 'MBI11_g13057_MAGBIO' => 'mbi', 'MD02G1137200' => 'mdo', 'MD06G1137200' => 'mdo', 'MD07G1122300' => 'mdo', 'MD09G1078200' => 'mdo', 'MD13G1123700' => 'mdo', 'MD14G1151900' => 'mdo', 'MD17G1030900' => 'mdo', 'MD17G1068200' => 'mdo', 'MD17G1068600' => 'mdo', 'Medtr3g077540' => 'mtr', 'Medtr4g105530' => 'mtr', 'Medtr8g076580' => 'mtr', 'Medtr8g076590' => 'mtr', 'Medtr8g096410' => 'mtr', 'MELO3C016411.2' => 'cme', 'MELO3C017780.2' => 'cme', 'MELO3C022560.2' => 'cme', 'MELO3C026187.2' => 'cme', 'MELO3C026286.2' => 'cme', 'MELO3C032854.2' => 'cme', 'Migut.H02495' => 'egut', 'Migut.I00561' => 'egut', 'Migut.K01015' => 'egut', 'Migut.K01016' => 'egut', 'Migut.L00743' => 'egut', 'Migut.L00744' => 'egut', 'Migut.L00746' => 'egut', 'Migut.L00798' => 'egut', 'Migut.L00799' => 'egut', 'Migut.N02096' => 'egut', 'MSTRG.11259' => 'ama', 'MSTRG.23142' => 'ama', 'MSTRG.2499' => 'ama', 'Nitab4.5_0000003g0730' => 'nta', 'Nitab4.5_0000137g0020' => 'nta', 'Nitab4.5_0000721g0210' => 'nta', 'Nitab4.5_0000723g0050' => 'nta', 'Nitab4.5_0000913g0070' => 'nta', 'Nitab4.5_0001332g0040' => 'nta', 'Nitab4.5_0001771g0050' => 'nta', 'Nitab4.5_0001918g0050' => 'nta', 'Nitab4.5_0002686g0030' => 'nta', 'Nitab4.5_0003156g0020' => 'nta', 'Nitab4.5_0003383g0040' => 'nta', 'Nitab4.5_0003918g0010' => 'nta', 'Nitab4.5_0006760g0010' => 'nta', 'Nn1g05981' => 'nnu', 'Nn1g06288' => 'nnu', 'Nn3g16371' => 'nnu', 'Nn3g16786' => 'nnu', 'Nn4g22232' => 'nnu', 'Oeu005144.1' => 'oeu', 'Oeu005145.1' => 'oeu', 'Oeu011348.1' => 'oeu', 'Oeu016415.1' => 'oeu', 'Oeu023501.1' => 'oeu', 'Oeu044473.1' => 'oeu', 'Oeu048892.2' => 'oeu', 'Os01g0549200' => 'osa', 'Os02g0469300' => 'osa', 'Os04g0311100' => 'osa', 'Os06g0474900' => 'osa', 'Os10g0181700' => 'osa', 'Os11g0454800' => 'osa', 'Peaxi162Scf00037g00714' => 'pax', 'Peaxi162Scf00084g01217' => 'pax', 'Peaxi162Scf00257g00217' => 'pax', 'Peaxi162Scf00516g00215' => 'pax', 'Peaxi162Scf00689g00123' => 'pax', 'PGR044G2719' => 'pgr', 'PGR083G1360' => 'pgr', 'PGR102G2849' => 'pgr', 'PGR119G2534' => 'pgr', 'PGSC0003DMG400003538' => 'stu', 'PGSC0003DMG400028138' => 'stu', 'PGSC0003DMG400031732' => 'stu', 'PGSC0003DMG400038165' => 'stu', 'Phvul.002G284600' => 'pvu', 'Phvul.003G258200' => 'pvu', 'Phvul.009G176500' => 'pvu', 'Potri.003G167201' => 'ptr', 'Potri.005G118400' => 'ptr', 'Potri.012G089000' => 'ptr', 'Potri.012G102800' => 'ptr', 'Potri.015G079400' => 'ptr', 'Potri.015G100900' => 'ptr', 'Pp3c14_9810' => 'ppa', 'Pp3c15_10450' => 'ppa', 'Pp3c20_19150' => 'ppa', 'Pp3c23_12740' => 'ppa', 'Pp3c23_6310' => 'ppa', 'Pp3c24_3720' => 'ppa', 'Pp3c27_2580' => 'ppa', 'Pp3c9_8990' => 'ppa', 'PRCOL_00002854' => 'pco', 'Prupe.1G221200' => 'ppe', 'Prupe.3G289000' => 'ppe', 'Prupe.5G147000' => 'ppe', 'Prupe.6G157300' => 'ppe', 'Prupe.7G163400' => 'ppe', 'Psat0s2177g0040' => 'psa', 'Psat3g174760' => 'psa', 'Psat3g192160' => 'psa', 'Psat4g058520' => 'psa', 'Psat4g096840' => 'psa', 'Psat7g037320' => 'psa', 'PSO017G1274' => 'pso', 'PSO017G5166' => 'pso', 'PSO063G4558' => 'pso', 'PSO170G4458' => 'pso', 'PSO170G5005' => 'pso', 'PSO210G6156' => 'pso', 'PSO210G6635' => 'pso', 'PSO210G7397' => 'pso', 'PSO210G7700' => 'pso', 'PSO455G0035' => 'pso', 'PSO455G0180' => 'pso', 'PSO478G4515' => 'pso', 'PSO832G1305' => 'pso', 'PSO832G3489' => 'pso', 'QL02p075247' => 'qlo', 'QL03p051148' => 'qlo', 'QL05p010313' => 'qlo', 'QL06p034627' => 'qlo', 'QL10p001889' => 'qlo', 'QL10p010846' => 'qlo', 'RcHm_v2.0_Chr1g0350621' => 'rch', 'RcHm_v2.0_Chr1g0350641' => 'rch', 'RcHm_v2.0_Chr2g0092891' => 'rch', 'RcHm_v2.0_Chr2g0100251' => 'rch', 'RcHm_v2.0_Chr2g0158661' => 'rch', 'RcHm_v2.0_Chr2g0172741' => 'rch', 'RcHm_v2.0_Chr4g0429571' => 'rch', 'RcHm_v2.0_Chr5g0042471' => 'rch', 'RcHm_v2.0_Chr7g0189451' => 'rch', 'Rhsim08G0052000' => 'rsi', 'Rhsim08G0174400' => 'rsi', 'Rhsim08G0193200' => 'rsi', 'Rhsim10G0214800' => 'rsi', 'Rhsim10G0214900' => 'rsi', 'Rhsim10G0215000' => 'rsi', 'Rhsim12G0022900' => 'rsi', 'Rhsim12G0177500' => 'rsi', 'Rhsim12G0177700' => 'rsi', 'Sabra03G0122600' => 'sbr', 'Sabra05G0097400' => 'sbr', 'Sabra12G0064100' => 'sbr', 'Sabra15G0121300' => 'sbr', 'SalBow2G0642' => 'sbo', 'SalBow5G2667' => 'sbo', 'SalBow5G4873' => 'sbo', 'SalBow8G2395' => 'sbo', 'Sc03g0003290' => 'sci', 'Sc10g0010130' => 'sci', 'Sc22g0003650' => 'sci', 'Sed0001603' => 'sed', 'Sed0004259' => 'sed', 'Sed0006789' => 'sed', 'Sed0011838' => 'sed', 'Sed0012964' => 'sed', 'Sed0016383' => 'sed', 'Sed0019010' => 'sed', 'Sed0020188' => 'sed', 'SEGI_04702' => 'sgi', 'SEGI_17231' => 'sgi', 'SEGI_18877' => 'sgi', 'SEGI_25196' => 'sgi', 'SEGI_25515' => 'sgi', 'SEGI_28445' => 'sgi', 'SEGI_37452' => 'sgi', 'SGA_v2.0_scaffold188G40336' => 'sas', 'SGA_v2.0_scaffold228G43247' => 'sas', 'SGA_v2.0_scaffold280G46853' => 'sas', 'SGA_v2.0_scaffold34G13808' => 'sas', 'SGA_v2.0_scaffold40G15576' => 'sas', 'SGA_v2.0_scaffold611G53188' => 'sas', 'SGA_v2.0_scaffold78G25461' => 'sas', 'SGA_v2.0_scaffold90G27888' => 'sas', 'SHI08601' => 'shi', 'SHI08606' => 'shi', 'SHI17117' => 'shi', 'SHI17119' => 'shi', 'SMO118G0201' => 'smo', 'SMO169G0247' => 'smo', 'SMO176G0006' => 'smo', 'SMO176G0015' => 'smo', 'SMO202G0006' => 'smo', 'SMO240G0050' => 'smo', 'SMO286G0009' => 'smo', 'SMO338G0033' => 'smo', 'SMO356G0533' => 'smo', 'SMO364G0382' => 'smo', 'SMO367G0166' => 'smo', 'SMO367G1098' => 'smo', 'Solyc01g009920.3' => 'sly', 'Solyc01g099300.3' => 'sly', 'Solyc02g084700.3' => 'sly', 'Solyc03g097520.3' => 'sly', 'Solyc06g071580.3' => 'sly', 'Solyc10g081760.3' => 'sly', 'Sopen01g005480' => 'spe', 'Sopen01g042850' => 'spe', 'Sopen02g029370' => 'spe', 'Sopen03g028280' => 'spe', 'Sopen06g027870' => 'spe', 'Sopen10g032270' => 'spe', 'Sp5g18180' => 'spa', 'Sp6g12880' => 'spa', 'Sp6g30850' => 'spa', 'Sp7g22960' => 'spa', 'Sp7g34010' => 'spa', 'SpUn1326_0010' => 'spa', 'TAR371G0242' => 'tar', 'TAR622G0638' => 'tar', 'TAR628G1548' => 'tar', 'TAR629G1079' => 'tar', 'TAR629G3413' => 'tar', 'THA.LOC104804249' => 'tha', 'THA.LOC104808315' => 'tha', 'THA.LOC104809238' => 'tha', 'THA.LOC104825484' => 'tha', 'Thecc.01G025500' => 'tca', 'Thecc.03G015800' => 'tca', 'Thecc.03G018000' => 'tca', 'Thecc.03G134800' => 'tca', 'Thecc.04G014700' => 'tca', 'Thhalv10006991m.g' => 'esa', 'Thhalv10012707m.g' => 'esa', 'Thhalv10015739m.g' => 'esa', 'Thhalv10024553m.g' => 'esa', 'Thhalv10024673m.g' => 'esa', 'Thhalv10029187m.g' => 'esa', 'TPR.G12971' => 'tpr', 'TPR.G29396' => 'tpr', 'TPR.G33376' => 'tpr', 'TPR.G35508' => 'tpr', 'TPR.G35516' => 'tpr', 'TPR.G37317' => 'tpr', 'TPR.G37389' => 'tpr', 'TPR.G37523' => 'tpr', 'TPR.G559' => 'tpr', 'TWI14G0070' => 'twi', 'TWI14G0729' => 'twi', 'TWI18G0596' => 'twi', 'TWI39G0780' => 'twi', 'TWI39G0850' => 'twi', 'TWI73G1052' => 'twi', 'unitig_52.g17485' => 'ugi', 'unitig_61.g26355' => 'ugi', 'vmacro01040' => 'vma', 'vmacro16731' => 'vma', 'vmacro18270' => 'vma', 'vmacro19142' => 'vma', 'vmacro19407' => 'vma', 'vmacro19408' => 'vma', 'vmacro21899' => 'vma', 'vmacro21900' => 'vma', 'vmacro21901' => 'vma', 'VMungo0251G0490' => 'vmu', 'VMungo0251G1748' => 'vmu', 'VMungo1309G0421' => 'vmu', 'Zm00001eb086500' => 'zma', 'Zm00001eb150680' => 'zma', 'Zm00001eb162330' => 'zma', 'Zm00001eb203130' => 'zma', 'Zm00001eb369480' => 'zma', 'Zm00001eb382340' => 'zma', 'Zm00001eb416360' => 'zma' ) $gf_id = 'HOM05D000902' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000902' ) $data_identifier = 'HOM05D000902' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 13, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 10, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 6, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 9, 'hma' => (int) 12, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 4, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 6, 'ppa' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 6, 'rch' => (int) 9, 'rsi' => (int) 9, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 12, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 3, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416360' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000902', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '663', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02470' => 'bna', 'A01p16260' => 'bna', 'A02p01680' => 'bna', 'A03p16600' => 'bna', 'A03p55660' => 'bna', 'A03p64160' => 'bna', 'A03p64170' => 'bna', 'A08p31900' => 'bna', 'A09p59530' => 'bna', 'A10p08230' => 'bna', 'A10p25090' => 'bna', 'Aa31LG3G7100' => 'aar', 'Aa31LG3G7110' => 'aar', 'Aa31LG6G13160' => 'aar', 'Aa31LG7G10770' => 'aar', 'Aa31LG7G3830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2723' => 'aag', 'Actinidia08045' => 'ach', 'Actinidia08888' => 'ach', 'Actinidia18333' => 'ach', 'Actinidia19334' => 'ach', 'Actinidia25552' => 'ach', 'Actinidia26089' => 'ach', 'Actinidia30615' => 'ach', 'Actinidia30616' => 'ach', 'Actinidia33083' => 'ach', 'Actinidia35762' => 'ach', 'Ah.02g110620' => 'amhyb', 'Ah.11g046390' => 'amhyb', 'AL1G31670' => 'aly', 'AL6G23730' => 'aly', 'AL7G14740' => 'aly', 'AL7G14750' => 'aly', 'AL7G14760' => 'aly', 'AL7G28220' => 'aly', 'AL8G24940' => 'aly', 'Aqoxy3G01665' => 'aox', 'Aqoxy3G02853' => 'aox', 'Aqoxy5G01513' => 'aox', 'Aqoxy5G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8SKA4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ75LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKDA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0LJZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7REX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZP4YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWX7I5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2QKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS0L9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPCD8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q161UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC7XCF' => 'arhy', 'AT1G19100' => 'ath', 'AT4G24970' => 'ath', 'AT4G36270' => 'ath', 'AT4G36280' => 'ath', 'AT4G36290' => 'ath', 'AT5G13130' => 'ath', 'AT5G50780' => 'ath', 'ATR0582G266' => 'atr', 'ATR0661G195' => 'atr', 'ATR1152G031' => 'atr', 'Atru.chr11.2382' => 'acertr', 'Atru.chr12.2337' => 'acertr', 'Atru.chr3.744' => 'acertr', 'Atru.chr6.1870' => 'acertr', 'Atru.chr9.2515' => 'acertr', 'AUR62004120' => 'cqu', 'AUR62005667' => 'cqu', 'AUR62007634' => 'cqu', 'AUR62008186' => 'cqu', 'AUR62008187' => 'cqu', 'AUR62008188' => 'cqu', 'AUR62027954' => 'cqu', 'AUR62028766' => 'cqu', 'AUR62028767' => 'cqu', 'AUR62028768' => 'cqu', 'AUR62028886' => 'cqu', 'AUR62029563' => 'cqu', 'AUR62038832' => 'cqu', 'BcaB01g04149' => 'bca', 'BcaB03g12940' => 'bca', 'BcaB03g13090' => 'bca', 'BcaB03g14466' => 'bca', 'BcaB05g24035' => 'bca', 'BcaC01g06050' => 'bca', 'BcaC04g19148' => 'bca', 'BcaC04g20761' => 'bca', 'BcaC06g32845' => 'bca', 'BcaC07g41274' => 'bca', 'BcaC09g50827' => 'bca', 'BcaNung00741' => 'bca', 'BcaNung00742' => 'bca', 'BcaNung01859' => 'bca', 'BcaNung03985' => 'bca', 'BcaNung03989' => 'bca', 'BcaNung05661' => 'bca', 'BolC1t00257H' => 'bol', 'BolC1t01956H' => 'bol', 'BolC2t06534H' => 'bol', 'BolC3t14334H' => 'bol', 'BolC5t30451H' => 'bol', 'BolC7t45880H' => 'bol', 'BolC7t46586H' => 'bol', 'BolC8t49301H' => 'bol', 'BolC8t51837H' => 'bol', 'BolC9t56822H' => 'bol', 'BolC9t59235H' => 'bol', 'BraA01t00234Z' => 'bra', 'BraA01t01563Z' => 'bra', 'BraA02t05147Z' => 'bra', 'BraA03t10947Z' => 'bra', 'BraA03t14633Z' => 'bra', 'BraA08t35112Z' => 'bra', 'BraA09t41330Z' => 'bra', 'BraA10t44570Z' => 'bra', 'C01p02670' => 'bna', 'C01p20260' => 'bna', 'C02p05890' => 'bna', 'C03p19530' => 'bna', 'C05p17470' => 'bna', 'C07p53900' => 'bna', 'C07p61630' => 'bna', 'C08p16800' => 'bna', 'C08p42810' => 'bna', 'C09p39480' => 'bna', 'C09p63980' => 'bna', 'CAN.G1001.7' => 'can', 'CAN.G1034.55' => 'can', 'CAN.G143.7' => 'can', 'CAN.G3340.1' => 'can', 'CAN.G358.19' => 'can', 'CAN.G373.2' => 'can', 'CAN.G674.16' => 'can', 'CAN.G674.17' => 'can', 'CAN.G674.18' => 'can', 'CAN.G732.2' => 'can', 'CAN.G732.3' => 'can', 'CAN.G993.39' => 'can', 'CANSAT01G2052' => 'cansat', 'CANSAT80G0070' => 'cansat', 'CANSAT80G0483' => 'cansat', 'CANSAT80G0625' => 'cansat', 'CARHR019690' => 'chi', 'CARHR080280' => 'chi', 'CARHR152750' => 'chi', 'CARHR152760' => 'chi', 'CARHR152770' => 'chi', 'CARHR200340' => 'chi', 'CARHR232370' => 'chi', 'CARHR244670' => 'chi', 'CARHR244680' => 'chi', 'CARHR257520' => 'chi', 'Carub.0001s1872' => 'cru', 'Carub.0006s1130' => 'cru', 'Carub.0007s0396' => 'cru', 'Carub.0007s0397' => 'cru', 'Carub.0007s1608' => 'cru', 'Carub.0008s1068' => 'cru', 'Carub.0008s1077' => 'cru', 'Ca_16158_v3' => 'car', 'Ca_17571_v3' => 'car', 'Ca_21936_v3' => 'car', 'Ca_22350_v3' => 'car', 'CBR_g22445' => 'cbr', 'CBR_g26290' => 'cbr', 'Cc04_g09610' => 'ccan', 'Cc04_g12280' => 'ccan', 'Cc07_g10230' => 'ccan', 'CDE02G0093' => 'cde', 'CDE02G0701' => 'cde', 'CDE04G1050' => 'cde', 'CDE05G1833' => 'cde', 'CDE05G3058' => 'cde', 'CDE05G3380' => 'cde', 'CDE06G0536' => 'cde', 'Cfa006923' => 'cfa', 'Cfa009402' => 'cfa', 'Cfa018751' => 'cfa', 'Cfa019164' => 'cfa', 'Cfa022935' => 'cfa', 'Ciclev10019081m.g' => 'ccl', 'Ciclev10025076m.g' => 'ccl', 'Ciclev10030712m.g' => 'ccl', 'Ciclev10033760m.g' => 'ccl', 'CiPaw.05G105600' => 'cil', 'CiPaw.08G136700' => 'cil', 'CiPaw.11G003900' => 'cil', 'CiPaw.11G023700' => 'cil', 'CiPaw.12G003700' => 'cil', 'ClCG06G017100' => 'cla', 'ClCG06G018110' => 'cla', 'ClCG07G008800' => 'cla', 'ClCG07G015330' => 'cla', 'COL.COLO4_13698' => 'col', 'COL.COLO4_16659' => 'col', 'COL.COLO4_21986' => 'col', 'COL.COLO4_24049' => 'col', 'COL.COLO4_29061' => 'col', 'COL.COLO4_29075' => 'col', 'COL.COLO4_30094' => 'col', 'Cpa.g.c33689' => 'cpa', 'Cpa.g.sc108.39' => 'cpa', 'Cpa.g.sc108.41' => 'cpa', 'Cpa.g.sc1163.1' => 'cpa', 'Cpa.g.sc4.155' => 'cpa', 'Cpa.g.sc6.194' => 'cpa', 'CsaV3_1G000340' => 'csa', 'CsaV3_1G001400' => 'csa', 'CsaV3_4G002220' => 'csa', 'CsaV3_4G005370' => 'csa', 'CSS0007487' => 'camsi', 'CSS0008066' => 'camsi', 'CSS0009120' => 'camsi', 'CSS0015512' => 'camsi', 'CSS0022409' => 'camsi', 'CSS0025358' => 'camsi', 'CSS0044547' => 'camsi', 'DCAR_013057' => 'dca', 'DCAR_015058' => 'dca', 'DCAR_016027' => 'dca', 'DCAR_017327' => 'dca', 'DCAR_020743' => 'dca', 'DCAR_026157' => 'dca', 'DCAR_032339' => 'dca', 'DCAR_032340' => 'dca', 'Dinv11200' => 'din', 'Dinv11201' => 'din', 'Dinv20631' => 'din', 'Dinv23182' => 'din', 'Dinv33466' => 'din', 'Dinv33583' => 'din', 'Dinv38565' => 'din', 'Duzib068G0200' => 'dzi', 'Duzib147G0132' => 'dzi', 'Duzib147G0635' => 'dzi', 'Duzib205G1670' => 'dzi', 'Duzib251G0606' => 'dzi', 'ECA232G3336' => 'eca', 'ECA232G3763' => 'eca', 'ECA232G4845' => 'eca', 'ECA234G1607' => 'eca', 'ECA246G0932' => 'eca', 'ECA247G0781' => 'eca', 'ECA247G1932' => 'eca', 'ECA247G2079' => 'eca', 'ECA247G3338' => 'eca', 'ECA247G4115' => 'eca', 'EL10Ac3g06552' => 'bvu', 'EL10Ac5g10721' => 'bvu', 'EL10Ac5g10722' => 'bvu', 'EL10Ac5g10723' => 'bvu', 'EL10Ac5g11361' => 'bvu', 'EL10Ac6g13553' => 'bvu', 'EL10As8g23872' => 'bvu', 'Eucgr.B00250' => 'egr', 'Eucgr.B00251' => 'egr', 'Eucgr.B03533' => 'egr', 'Eucgr.I02381' => 'egr', 'Eucgr.K02700' => 'egr', 'FAN02G0174' => 'fan', 'FAN02G3146' => 'fan', 'FAN04G1672' => 'fan', 'FAN04G2273' => 'fan', 'FAN05G2791' => 'fan', 'FAN05G4035' => 'fan', 'FAN07G0834' => 'fan', 'FAN08G1198' => 'fan', 'FAN09G4182' => 'fan', 'FAN12G0496' => 'fan', 'FAN13G1027' => 'fan', 'FAN13G2951' => 'fan', 'FAN14G0705' => 'fan', 'FAN14G0720' => 'fan', 'FAN17G0201' => 'fan', 'FAN17G2665' => 'fan', 'FAN18G1456' => 'fan', 'FAN18G1525' => 'fan', 'FAN18G3500' => 'fan', 'FAN28G2670' => 'fan', 'FvH4_1g12391' => 'fve', 'FvH4_4g23220' => 'fve', 'FvH4_5g08810' => 'fve', 'FvH4_5g28960' => 'fve', 'FvH4_6g42820' => 'fve', 'FvH4_6g51110' => 'fve', 'Glyma.02G051802' => 'gma', 'Glyma.04G185300' => 'gma', 'Glyma.05G202900' => 'gma', 'Glyma.08G010300' => 'gma', 'Glyma.16G131900' => 'gma', 'Glyma.17G087900' => 'gma', 'Gohir.A07G048600' => 'ghi', 'Gohir.A11G179000' => 'ghi', 'Gohir.A12G140900' => 'ghi', 'Gohir.A12G140950' => 'ghi', 'Gohir.A12G191700' => 'ghi', 'Gohir.A13G086300' => 'ghi', 'Gohir.D07G052900' => 'ghi', 'Gohir.D11G186600' => 'ghi', 'Gohir.D12G145575' => 'ghi', 'Gohir.D12G145650' => 'ghi', 'Gohir.D12G145725' => 'ghi', 'Gohir.D12G194050' => 'ghi', 'Gohir.D13G091800' => 'ghi', 'Gorai.001G055900' => 'gra', 'Gorai.007G198400' => 'gra', 'Gorai.008G157000' => 'gra', 'Gorai.008G157100' => 'gra', 'Gorai.008G208700' => 'gra', 'Gorai.010G138700' => 'gra', 'GSVIVG01000977001' => 'vvi', 'GSVIVG01007708001' => 'vvi', 'GSVIVG01008587001' => 'vvi', 'GSVIVG01018849001' => 'vvi', 'GSVIVG01032432001' => 'vvi', 'HanXRQChr02g0034131' => 'han', 'HanXRQChr02g0035981' => 'han', 'HanXRQChr02g0035991' => 'han', 'HanXRQChr05g0155611' => 'han', 'HanXRQChr05g0155621' => 'han', 'HanXRQChr08g0236501' => 'han', 'HanXRQChr09g0261321' => 'han', 'HanXRQChr09g0272081' => 'han', 'HanXRQChr10g0310741' => 'han', 'HanXRQChr11g0325591' => 'han', 'HanXRQChr12g0385691' => 'han', 'HanXRQChr13g0387801' => 'han', 'HanXRQChr15g0463011' => 'han', 'Haze_03826' => 'cav', 'Haze_03827' => 'cav', 'Haze_07183' => 'cav', 'Haze_07537' => 'cav', 'Haze_07539' => 'cav', 'Haze_12461' => 'cav', 'Haze_16115' => 'cav', 'Haze_16808' => 'cav', 'Haze_18531' => 'cav', 'Hma1.2p1_0046F.1_g026700' => 'hma', 'Hma1.2p1_0046F.1_g026710' => 'hma', 'Hma1.2p1_0168F.1_g074340' => 'hma', 'Hma1.2p1_0266F.1_g107030' => 'hma', 'Hma1.2p1_0266F.1_g107060' => 'hma', 'Hma1.2p1_0275F.1_g110510' => 'hma', 'Hma1.2p1_0592F.1_g185490' => 'hma', 'Hma1.2p1_0592F.1_g185500' => 'hma', 'Hma1.2p1_0592F.1_g185510' => 'hma', 'Hma1.2p1_0592F.1_g185520' => 'hma', 'Hma1.2p1_0592F.1_g185530' => 'hma', 'Hma1.2p1_0818F.1_g223450' => 'hma', 'HPP92_009708' => 'vpl', 'HPP92_009793' => 'vpl', 'HPP92_009796' => 'vpl', 'HPP92_009797' => 'vpl', 'HPP92_014940' => 'vpl', 'HPP92_014988' => 'vpl', 'Hund02463' => 'sun', 'Hund02760' => 'sun', 'Hund05071' => 'sun', 'Hund10108' => 'sun', 'Hund11204' => 'sun', 'Hund14016' => 'sun', 'Hund16464' => 'sun', 'Lalb_Chr09g0333391' => 'lal', 'Lalb_Chr11g0070461' => 'lal', 'Lalb_Chr12g0201671' => 'lal', 'Lalb_Chr13g0297161' => 'lal', 'Lj1g0002823' => 'lja', 'Lj3C1074T6' => 'lonja', 'Lj4A212T28' => 'lonja', 'Lj4g0005516' => 'lja', 'Lj4g0013705' => 'lja', 'Lj4g0027865' => 'lja', 'Lj5C92G16' => 'lonja', 'Lj5C92T12' => 'lonja', 'Lj7C596T3' => 'lonja', 'Lj9A446G59' => 'lonja', 'Lj9A482G21' => 'lonja', 'Lsat_1_v5_gn_1_28261' => 'lsa', 'Lsat_1_v5_gn_1_28281' => 'lsa', 'Lsat_1_v5_gn_1_32721' => 'lsa', 'Lsat_1_v5_gn_4_151760' => 'lsa', 'Lsat_1_v5_gn_4_2120' => 'lsa', 'Lsat_1_v5_gn_4_75761' => 'lsa', 'Lsat_1_v5_gn_5_10920' => 'lsa', 'Manes.02G099900' => 'mes', 'Manes.11G096200' => 'mes', 'Manes.12G007200' => 'mes', 'Manes.14G048300' => 'mes', 'Manes.17G114700' => 'mes', 'Mapoly0002s0070' => 'mpo', 'Mapoly0029s0099' => 'mpo', 'MBI07_g24742_MAGBIO' => 'mbi', 'MBI10_g27988_MAGBIO' => 'mbi', 'MBI11_g13057_MAGBIO' => 'mbi', 'MD02G1137200' => 'mdo', 'MD06G1137200' => 'mdo', 'MD07G1122300' => 'mdo', 'MD09G1078200' => 'mdo', 'MD13G1123700' => 'mdo', 'MD14G1151900' => 'mdo', 'MD17G1030900' => 'mdo', 'MD17G1068200' => 'mdo', 'MD17G1068600' => 'mdo', 'Medtr3g077540' => 'mtr', 'Medtr4g105530' => 'mtr', 'Medtr8g076580' => 'mtr', 'Medtr8g076590' => 'mtr', 'Medtr8g096410' => 'mtr', 'MELO3C016411.2' => 'cme', 'MELO3C017780.2' => 'cme', 'MELO3C022560.2' => 'cme', 'MELO3C026187.2' => 'cme', 'MELO3C026286.2' => 'cme', 'MELO3C032854.2' => 'cme', 'Migut.H02495' => 'egut', 'Migut.I00561' => 'egut', 'Migut.K01015' => 'egut', 'Migut.K01016' => 'egut', 'Migut.L00743' => 'egut', 'Migut.L00744' => 'egut', 'Migut.L00746' => 'egut', 'Migut.L00798' => 'egut', 'Migut.L00799' => 'egut', 'Migut.N02096' => 'egut', 'MSTRG.11259' => 'ama', 'MSTRG.23142' => 'ama', 'MSTRG.2499' => 'ama', 'Nitab4.5_0000003g0730' => 'nta', 'Nitab4.5_0000137g0020' => 'nta', 'Nitab4.5_0000721g0210' => 'nta', 'Nitab4.5_0000723g0050' => 'nta', 'Nitab4.5_0000913g0070' => 'nta', 'Nitab4.5_0001332g0040' => 'nta', 'Nitab4.5_0001771g0050' => 'nta', 'Nitab4.5_0001918g0050' => 'nta', 'Nitab4.5_0002686g0030' => 'nta', 'Nitab4.5_0003156g0020' => 'nta', 'Nitab4.5_0003383g0040' => 'nta', 'Nitab4.5_0003918g0010' => 'nta', 'Nitab4.5_0006760g0010' => 'nta', 'Nn1g05981' => 'nnu', 'Nn1g06288' => 'nnu', 'Nn3g16371' => 'nnu', 'Nn3g16786' => 'nnu', 'Nn4g22232' => 'nnu', 'Oeu005144.1' => 'oeu', 'Oeu005145.1' => 'oeu', 'Oeu011348.1' => 'oeu', 'Oeu016415.1' => 'oeu', 'Oeu023501.1' => 'oeu', 'Oeu044473.1' => 'oeu', 'Oeu048892.2' => 'oeu', 'Os01g0549200' => 'osa', 'Os02g0469300' => 'osa', 'Os04g0311100' => 'osa', 'Os06g0474900' => 'osa', 'Os10g0181700' => 'osa', 'Os11g0454800' => 'osa', 'Peaxi162Scf00037g00714' => 'pax', 'Peaxi162Scf00084g01217' => 'pax', 'Peaxi162Scf00257g00217' => 'pax', 'Peaxi162Scf00516g00215' => 'pax', 'Peaxi162Scf00689g00123' => 'pax', 'PGR044G2719' => 'pgr', 'PGR083G1360' => 'pgr', 'PGR102G2849' => 'pgr', 'PGR119G2534' => 'pgr', 'PGSC0003DMG400003538' => 'stu', 'PGSC0003DMG400028138' => 'stu', 'PGSC0003DMG400031732' => 'stu', 'PGSC0003DMG400038165' => 'stu', 'Phvul.002G284600' => 'pvu', 'Phvul.003G258200' => 'pvu', 'Phvul.009G176500' => 'pvu', 'Potri.003G167201' => 'ptr', 'Potri.005G118400' => 'ptr', 'Potri.012G089000' => 'ptr', 'Potri.012G102800' => 'ptr', 'Potri.015G079400' => 'ptr', 'Potri.015G100900' => 'ptr', 'Pp3c14_9810' => 'ppa', 'Pp3c15_10450' => 'ppa', 'Pp3c20_19150' => 'ppa', 'Pp3c23_12740' => 'ppa', 'Pp3c23_6310' => 'ppa', 'Pp3c24_3720' => 'ppa', 'Pp3c27_2580' => 'ppa', 'Pp3c9_8990' => 'ppa', 'PRCOL_00002854' => 'pco', 'Prupe.1G221200' => 'ppe', 'Prupe.3G289000' => 'ppe', 'Prupe.5G147000' => 'ppe', 'Prupe.6G157300' => 'ppe', 'Prupe.7G163400' => 'ppe', 'Psat0s2177g0040' => 'psa', 'Psat3g174760' => 'psa', 'Psat3g192160' => 'psa', 'Psat4g058520' => 'psa', 'Psat4g096840' => 'psa', 'Psat7g037320' => 'psa', 'PSO017G1274' => 'pso', 'PSO017G5166' => 'pso', 'PSO063G4558' => 'pso', 'PSO170G4458' => 'pso', 'PSO170G5005' => 'pso', 'PSO210G6156' => 'pso', 'PSO210G6635' => 'pso', 'PSO210G7397' => 'pso', 'PSO210G7700' => 'pso', 'PSO455G0035' => 'pso', 'PSO455G0180' => 'pso', 'PSO478G4515' => 'pso', 'PSO832G1305' => 'pso', 'PSO832G3489' => 'pso', 'QL02p075247' => 'qlo', 'QL03p051148' => 'qlo', 'QL05p010313' => 'qlo', 'QL06p034627' => 'qlo', 'QL10p001889' => 'qlo', 'QL10p010846' => 'qlo', 'RcHm_v2.0_Chr1g0350621' => 'rch', 'RcHm_v2.0_Chr1g0350641' => 'rch', 'RcHm_v2.0_Chr2g0092891' => 'rch', 'RcHm_v2.0_Chr2g0100251' => 'rch', 'RcHm_v2.0_Chr2g0158661' => 'rch', 'RcHm_v2.0_Chr2g0172741' => 'rch', 'RcHm_v2.0_Chr4g0429571' => 'rch', 'RcHm_v2.0_Chr5g0042471' => 'rch', 'RcHm_v2.0_Chr7g0189451' => 'rch', 'Rhsim08G0052000' => 'rsi', 'Rhsim08G0174400' => 'rsi', 'Rhsim08G0193200' => 'rsi', 'Rhsim10G0214800' => 'rsi', 'Rhsim10G0214900' => 'rsi', 'Rhsim10G0215000' => 'rsi', 'Rhsim12G0022900' => 'rsi', 'Rhsim12G0177500' => 'rsi', 'Rhsim12G0177700' => 'rsi', 'Sabra03G0122600' => 'sbr', 'Sabra05G0097400' => 'sbr', 'Sabra12G0064100' => 'sbr', 'Sabra15G0121300' => 'sbr', 'SalBow2G0642' => 'sbo', 'SalBow5G2667' => 'sbo', 'SalBow5G4873' => 'sbo', 'SalBow8G2395' => 'sbo', 'Sc03g0003290' => 'sci', 'Sc10g0010130' => 'sci', 'Sc22g0003650' => 'sci', 'Sed0001603' => 'sed', 'Sed0004259' => 'sed', 'Sed0006789' => 'sed', 'Sed0011838' => 'sed', 'Sed0012964' => 'sed', 'Sed0016383' => 'sed', 'Sed0019010' => 'sed', 'Sed0020188' => 'sed', 'SEGI_04702' => 'sgi', 'SEGI_17231' => 'sgi', 'SEGI_18877' => 'sgi', 'SEGI_25196' => 'sgi', 'SEGI_25515' => 'sgi', 'SEGI_28445' => 'sgi', 'SEGI_37452' => 'sgi', 'SGA_v2.0_scaffold188G40336' => 'sas', 'SGA_v2.0_scaffold228G43247' => 'sas', 'SGA_v2.0_scaffold280G46853' => 'sas', 'SGA_v2.0_scaffold34G13808' => 'sas', 'SGA_v2.0_scaffold40G15576' => 'sas', 'SGA_v2.0_scaffold611G53188' => 'sas', 'SGA_v2.0_scaffold78G25461' => 'sas', 'SGA_v2.0_scaffold90G27888' => 'sas', 'SHI08601' => 'shi', 'SHI08606' => 'shi', 'SHI17117' => 'shi', 'SHI17119' => 'shi', 'SMO118G0201' => 'smo', 'SMO169G0247' => 'smo', 'SMO176G0006' => 'smo', 'SMO176G0015' => 'smo', 'SMO202G0006' => 'smo', 'SMO240G0050' => 'smo', 'SMO286G0009' => 'smo', 'SMO338G0033' => 'smo', 'SMO356G0533' => 'smo', 'SMO364G0382' => 'smo', 'SMO367G0166' => 'smo', 'SMO367G1098' => 'smo', 'Solyc01g009920.3' => 'sly', 'Solyc01g099300.3' => 'sly', 'Solyc02g084700.3' => 'sly', 'Solyc03g097520.3' => 'sly', 'Solyc06g071580.3' => 'sly', 'Solyc10g081760.3' => 'sly', 'Sopen01g005480' => 'spe', 'Sopen01g042850' => 'spe', 'Sopen02g029370' => 'spe', 'Sopen03g028280' => 'spe', 'Sopen06g027870' => 'spe', 'Sopen10g032270' => 'spe', 'Sp5g18180' => 'spa', 'Sp6g12880' => 'spa', 'Sp6g30850' => 'spa', 'Sp7g22960' => 'spa', 'Sp7g34010' => 'spa', 'SpUn1326_0010' => 'spa', 'TAR371G0242' => 'tar', 'TAR622G0638' => 'tar', 'TAR628G1548' => 'tar', 'TAR629G1079' => 'tar', 'TAR629G3413' => 'tar', 'THA.LOC104804249' => 'tha', 'THA.LOC104808315' => 'tha', 'THA.LOC104809238' => 'tha', 'THA.LOC104825484' => 'tha', 'Thecc.01G025500' => 'tca', 'Thecc.03G015800' => 'tca', 'Thecc.03G018000' => 'tca', 'Thecc.03G134800' => 'tca', 'Thecc.04G014700' => 'tca', 'Thhalv10006991m.g' => 'esa', 'Thhalv10012707m.g' => 'esa', 'Thhalv10015739m.g' => 'esa', 'Thhalv10024553m.g' => 'esa', 'Thhalv10024673m.g' => 'esa', 'Thhalv10029187m.g' => 'esa', 'TPR.G12971' => 'tpr', 'TPR.G29396' => 'tpr', 'TPR.G33376' => 'tpr', 'TPR.G35508' => 'tpr', 'TPR.G35516' => 'tpr', 'TPR.G37317' => 'tpr', 'TPR.G37389' => 'tpr', 'TPR.G37523' => 'tpr', 'TPR.G559' => 'tpr', 'TWI14G0070' => 'twi', 'TWI14G0729' => 'twi', 'TWI18G0596' => 'twi', 'TWI39G0780' => 'twi', 'TWI39G0850' => 'twi', 'TWI73G1052' => 'twi', 'unitig_52.g17485' => 'ugi', 'unitig_61.g26355' => 'ugi', 'vmacro01040' => 'vma', 'vmacro16731' => 'vma', 'vmacro18270' => 'vma', 'vmacro19142' => 'vma', 'vmacro19407' => 'vma', 'vmacro19408' => 'vma', 'vmacro21899' => 'vma', 'vmacro21900' => 'vma', 'vmacro21901' => 'vma', 'VMungo0251G0490' => 'vmu', 'VMungo0251G1748' => 'vmu', 'VMungo1309G0421' => 'vmu', 'Zm00001eb086500' => 'zma', 'Zm00001eb150680' => 'zma', 'Zm00001eb162330' => 'zma', 'Zm00001eb203130' => 'zma', 'Zm00001eb369480' => 'zma', 'Zm00001eb382340' => 'zma', 'Zm00001eb416360' => 'zma' ), 'gf_id' => 'HOM05D000902', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000902' ), 'data_identifier' => 'HOM05D000902', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000902', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '663', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02470' => 'bna', 'A01p16260' => 'bna', 'A02p01680' => 'bna', 'A03p16600' => 'bna', 'A03p55660' => 'bna', 'A03p64160' => 'bna', 'A03p64170' => 'bna', 'A08p31900' => 'bna', 'A09p59530' => 'bna', 'A10p08230' => 'bna', 'A10p25090' => 'bna', 'Aa31LG3G7100' => 'aar', 'Aa31LG3G7110' => 'aar', 'Aa31LG6G13160' => 'aar', 'Aa31LG7G10770' => 'aar', 'Aa31LG7G3830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2723' => 'aag', 'Actinidia08045' => 'ach', 'Actinidia08888' => 'ach', 'Actinidia18333' => 'ach', 'Actinidia19334' => 'ach', 'Actinidia25552' => 'ach', 'Actinidia26089' => 'ach', 'Actinidia30615' => 'ach', 'Actinidia30616' => 'ach', 'Actinidia33083' => 'ach', 'Actinidia35762' => 'ach', 'Ah.02g110620' => 'amhyb', 'Ah.11g046390' => 'amhyb', 'AL1G31670' => 'aly', 'AL6G23730' => 'aly', 'AL7G14740' => 'aly', 'AL7G14750' => 'aly', 'AL7G14760' => 'aly', 'AL7G28220' => 'aly', 'AL8G24940' => 'aly', 'Aqoxy3G01665' => 'aox', 'Aqoxy3G02853' => 'aox', 'Aqoxy5G01513' => 'aox', 'Aqoxy5G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8SKA4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ75LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKDA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0LJZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7REX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZP4YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWX7I5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2QKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS0L9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPCD8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q161UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC7XCF' => 'arhy', 'AT1G19100' => 'ath', 'AT4G24970' => 'ath', 'AT4G36270' => 'ath', 'AT4G36280' => 'ath', 'AT4G36290' => 'ath', 'AT5G13130' => 'ath', 'AT5G50780' => 'ath', 'ATR0582G266' => 'atr', 'ATR0661G195' => 'atr', 'ATR1152G031' => 'atr', 'Atru.chr11.2382' => 'acertr', 'Atru.chr12.2337' => 'acertr', 'Atru.chr3.744' => 'acertr', 'Atru.chr6.1870' => 'acertr', 'Atru.chr9.2515' => 'acertr', 'AUR62004120' => 'cqu', 'AUR62005667' => 'cqu', 'AUR62007634' => 'cqu', 'AUR62008186' => 'cqu', 'AUR62008187' => 'cqu', 'AUR62008188' => 'cqu', 'AUR62027954' => 'cqu', 'AUR62028766' => 'cqu', 'AUR62028767' => 'cqu', 'AUR62028768' => 'cqu', 'AUR62028886' => 'cqu', 'AUR62029563' => 'cqu', 'AUR62038832' => 'cqu', 'BcaB01g04149' => 'bca', 'BcaB03g12940' => 'bca', 'BcaB03g13090' => 'bca', 'BcaB03g14466' => 'bca', 'BcaB05g24035' => 'bca', 'BcaC01g06050' => 'bca', 'BcaC04g19148' => 'bca', 'BcaC04g20761' => 'bca', 'BcaC06g32845' => 'bca', 'BcaC07g41274' => 'bca', 'BcaC09g50827' => 'bca', 'BcaNung00741' => 'bca', 'BcaNung00742' => 'bca', 'BcaNung01859' => 'bca', 'BcaNung03985' => 'bca', 'BcaNung03989' => 'bca', 'BcaNung05661' => 'bca', 'BolC1t00257H' => 'bol', 'BolC1t01956H' => 'bol', 'BolC2t06534H' => 'bol', 'BolC3t14334H' => 'bol', 'BolC5t30451H' => 'bol', 'BolC7t45880H' => 'bol', 'BolC7t46586H' => 'bol', 'BolC8t49301H' => 'bol', 'BolC8t51837H' => 'bol', 'BolC9t56822H' => 'bol', 'BolC9t59235H' => 'bol', 'BraA01t00234Z' => 'bra', 'BraA01t01563Z' => 'bra', 'BraA02t05147Z' => 'bra', 'BraA03t10947Z' => 'bra', 'BraA03t14633Z' => 'bra', 'BraA08t35112Z' => 'bra', 'BraA09t41330Z' => 'bra', 'BraA10t44570Z' => 'bra', 'C01p02670' => 'bna', 'C01p20260' => 'bna', 'C02p05890' => 'bna', 'C03p19530' => 'bna', 'C05p17470' => 'bna', 'C07p53900' => 'bna', 'C07p61630' => 'bna', 'C08p16800' => 'bna', 'C08p42810' => 'bna', 'C09p39480' => 'bna', 'C09p63980' => 'bna', 'CAN.G1001.7' => 'can', 'CAN.G1034.55' => 'can', 'CAN.G143.7' => 'can', 'CAN.G3340.1' => 'can', 'CAN.G358.19' => 'can', 'CAN.G373.2' => 'can', 'CAN.G674.16' => 'can', 'CAN.G674.17' => 'can', 'CAN.G674.18' => 'can', 'CAN.G732.2' => 'can', 'CAN.G732.3' => 'can', 'CAN.G993.39' => 'can', 'CANSAT01G2052' => 'cansat', 'CANSAT80G0070' => 'cansat', 'CANSAT80G0483' => 'cansat', 'CANSAT80G0625' => 'cansat', 'CARHR019690' => 'chi', 'CARHR080280' => 'chi', 'CARHR152750' => 'chi', 'CARHR152760' => 'chi', 'CARHR152770' => 'chi', 'CARHR200340' => 'chi', 'CARHR232370' => 'chi', 'CARHR244670' => 'chi', 'CARHR244680' => 'chi', 'CARHR257520' => 'chi', 'Carub.0001s1872' => 'cru', 'Carub.0006s1130' => 'cru', 'Carub.0007s0396' => 'cru', 'Carub.0007s0397' => 'cru', 'Carub.0007s1608' => 'cru', 'Carub.0008s1068' => 'cru', 'Carub.0008s1077' => 'cru', 'Ca_16158_v3' => 'car', 'Ca_17571_v3' => 'car', 'Ca_21936_v3' => 'car', 'Ca_22350_v3' => 'car', 'CBR_g22445' => 'cbr', 'CBR_g26290' => 'cbr', 'Cc04_g09610' => 'ccan', 'Cc04_g12280' => 'ccan', 'Cc07_g10230' => 'ccan', 'CDE02G0093' => 'cde', 'CDE02G0701' => 'cde', 'CDE04G1050' => 'cde', 'CDE05G1833' => 'cde', 'CDE05G3058' => 'cde', 'CDE05G3380' => 'cde', 'CDE06G0536' => 'cde', 'Cfa006923' => 'cfa', 'Cfa009402' => 'cfa', 'Cfa018751' => 'cfa', 'Cfa019164' => 'cfa', 'Cfa022935' => 'cfa', 'Ciclev10019081m.g' => 'ccl', 'Ciclev10025076m.g' => 'ccl', 'Ciclev10030712m.g' => 'ccl', 'Ciclev10033760m.g' => 'ccl', 'CiPaw.05G105600' => 'cil', 'CiPaw.08G136700' => 'cil', 'CiPaw.11G003900' => 'cil', 'CiPaw.11G023700' => 'cil', 'CiPaw.12G003700' => 'cil', 'ClCG06G017100' => 'cla', 'ClCG06G018110' => 'cla', 'ClCG07G008800' => 'cla', 'ClCG07G015330' => 'cla', 'COL.COLO4_13698' => 'col', 'COL.COLO4_16659' => 'col', 'COL.COLO4_21986' => 'col', 'COL.COLO4_24049' => 'col', 'COL.COLO4_29061' => 'col', 'COL.COLO4_29075' => 'col', 'COL.COLO4_30094' => 'col', 'Cpa.g.c33689' => 'cpa', 'Cpa.g.sc108.39' => 'cpa', 'Cpa.g.sc108.41' => 'cpa', 'Cpa.g.sc1163.1' => 'cpa', 'Cpa.g.sc4.155' => 'cpa', 'Cpa.g.sc6.194' => 'cpa', 'CsaV3_1G000340' => 'csa', 'CsaV3_1G001400' => 'csa', 'CsaV3_4G002220' => 'csa', 'CsaV3_4G005370' => 'csa', 'CSS0007487' => 'camsi', 'CSS0008066' => 'camsi', 'CSS0009120' => 'camsi', 'CSS0015512' => 'camsi', 'CSS0022409' => 'camsi', 'CSS0025358' => 'camsi', 'CSS0044547' => 'camsi', 'DCAR_013057' => 'dca', 'DCAR_015058' => 'dca', 'DCAR_016027' => 'dca', 'DCAR_017327' => 'dca', 'DCAR_020743' => 'dca', 'DCAR_026157' => 'dca', 'DCAR_032339' => 'dca', 'DCAR_032340' => 'dca', 'Dinv11200' => 'din', 'Dinv11201' => 'din', 'Dinv20631' => 'din', 'Dinv23182' => 'din', 'Dinv33466' => 'din', 'Dinv33583' => 'din', 'Dinv38565' => 'din', 'Duzib068G0200' => 'dzi', 'Duzib147G0132' => 'dzi', 'Duzib147G0635' => 'dzi', 'Duzib205G1670' => 'dzi', 'Duzib251G0606' => 'dzi', 'ECA232G3336' => 'eca', 'ECA232G3763' => 'eca', 'ECA232G4845' => 'eca', 'ECA234G1607' => 'eca', 'ECA246G0932' => 'eca', 'ECA247G0781' => 'eca', 'ECA247G1932' => 'eca', 'ECA247G2079' => 'eca', 'ECA247G3338' => 'eca', 'ECA247G4115' => 'eca', 'EL10Ac3g06552' => 'bvu', 'EL10Ac5g10721' => 'bvu', 'EL10Ac5g10722' => 'bvu', 'EL10Ac5g10723' => 'bvu', 'EL10Ac5g11361' => 'bvu', 'EL10Ac6g13553' => 'bvu', 'EL10As8g23872' => 'bvu', 'Eucgr.B00250' => 'egr', 'Eucgr.B00251' => 'egr', 'Eucgr.B03533' => 'egr', 'Eucgr.I02381' => 'egr', 'Eucgr.K02700' => 'egr', 'FAN02G0174' => 'fan', 'FAN02G3146' => 'fan', 'FAN04G1672' => 'fan', 'FAN04G2273' => 'fan', 'FAN05G2791' => 'fan', 'FAN05G4035' => 'fan', 'FAN07G0834' => 'fan', 'FAN08G1198' => 'fan', 'FAN09G4182' => 'fan', 'FAN12G0496' => 'fan', 'FAN13G1027' => 'fan', 'FAN13G2951' => 'fan', 'FAN14G0705' => 'fan', 'FAN14G0720' => 'fan', 'FAN17G0201' => 'fan', 'FAN17G2665' => 'fan', 'FAN18G1456' => 'fan', 'FAN18G1525' => 'fan', 'FAN18G3500' => 'fan', 'FAN28G2670' => 'fan', 'FvH4_1g12391' => 'fve', 'FvH4_4g23220' => 'fve', 'FvH4_5g08810' => 'fve', 'FvH4_5g28960' => 'fve', 'FvH4_6g42820' => 'fve', 'FvH4_6g51110' => 'fve', 'Glyma.02G051802' => 'gma', 'Glyma.04G185300' => 'gma', 'Glyma.05G202900' => 'gma', 'Glyma.08G010300' => 'gma', 'Glyma.16G131900' => 'gma', 'Glyma.17G087900' => 'gma', 'Gohir.A07G048600' => 'ghi', 'Gohir.A11G179000' => 'ghi', 'Gohir.A12G140900' => 'ghi', 'Gohir.A12G140950' => 'ghi', 'Gohir.A12G191700' => 'ghi', 'Gohir.A13G086300' => 'ghi', 'Gohir.D07G052900' => 'ghi', 'Gohir.D11G186600' => 'ghi', 'Gohir.D12G145575' => 'ghi', 'Gohir.D12G145650' => 'ghi', 'Gohir.D12G145725' => 'ghi', 'Gohir.D12G194050' => 'ghi', 'Gohir.D13G091800' => 'ghi', 'Gorai.001G055900' => 'gra', 'Gorai.007G198400' => 'gra', 'Gorai.008G157000' => 'gra', 'Gorai.008G157100' => 'gra', 'Gorai.008G208700' => 'gra', 'Gorai.010G138700' => 'gra', 'GSVIVG01000977001' => 'vvi', 'GSVIVG01007708001' => 'vvi', 'GSVIVG01008587001' => 'vvi', 'GSVIVG01018849001' => 'vvi', 'GSVIVG01032432001' => 'vvi', 'HanXRQChr02g0034131' => 'han', 'HanXRQChr02g0035981' => 'han', 'HanXRQChr02g0035991' => 'han', 'HanXRQChr05g0155611' => 'han', 'HanXRQChr05g0155621' => 'han', 'HanXRQChr08g0236501' => 'han', 'HanXRQChr09g0261321' => 'han', 'HanXRQChr09g0272081' => 'han', 'HanXRQChr10g0310741' => 'han', 'HanXRQChr11g0325591' => 'han', 'HanXRQChr12g0385691' => 'han', 'HanXRQChr13g0387801' => 'han', 'HanXRQChr15g0463011' => 'han', 'Haze_03826' => 'cav', 'Haze_03827' => 'cav', 'Haze_07183' => 'cav', 'Haze_07537' => 'cav', 'Haze_07539' => 'cav', 'Haze_12461' => 'cav', 'Haze_16115' => 'cav', 'Haze_16808' => 'cav', 'Haze_18531' => 'cav', 'Hma1.2p1_0046F.1_g026700' => 'hma', 'Hma1.2p1_0046F.1_g026710' => 'hma', 'Hma1.2p1_0168F.1_g074340' => 'hma', 'Hma1.2p1_0266F.1_g107030' => 'hma', 'Hma1.2p1_0266F.1_g107060' => 'hma', 'Hma1.2p1_0275F.1_g110510' => 'hma', 'Hma1.2p1_0592F.1_g185490' => 'hma', 'Hma1.2p1_0592F.1_g185500' => 'hma', 'Hma1.2p1_0592F.1_g185510' => 'hma', 'Hma1.2p1_0592F.1_g185520' => 'hma', 'Hma1.2p1_0592F.1_g185530' => 'hma', 'Hma1.2p1_0818F.1_g223450' => 'hma', 'HPP92_009708' => 'vpl', 'HPP92_009793' => 'vpl', 'HPP92_009796' => 'vpl', 'HPP92_009797' => 'vpl', 'HPP92_014940' => 'vpl', 'HPP92_014988' => 'vpl', 'Hund02463' => 'sun', 'Hund02760' => 'sun', 'Hund05071' => 'sun', 'Hund10108' => 'sun', 'Hund11204' => 'sun', 'Hund14016' => 'sun', 'Hund16464' => 'sun', 'Lalb_Chr09g0333391' => 'lal', 'Lalb_Chr11g0070461' => 'lal', 'Lalb_Chr12g0201671' => 'lal', 'Lalb_Chr13g0297161' => 'lal', 'Lj1g0002823' => 'lja', 'Lj3C1074T6' => 'lonja', 'Lj4A212T28' => 'lonja', 'Lj4g0005516' => 'lja', 'Lj4g0013705' => 'lja', 'Lj4g0027865' => 'lja', 'Lj5C92G16' => 'lonja', 'Lj5C92T12' => 'lonja', 'Lj7C596T3' => 'lonja', 'Lj9A446G59' => 'lonja', 'Lj9A482G21' => 'lonja', 'Lsat_1_v5_gn_1_28261' => 'lsa', 'Lsat_1_v5_gn_1_28281' => 'lsa', 'Lsat_1_v5_gn_1_32721' => 'lsa', 'Lsat_1_v5_gn_4_151760' => 'lsa', 'Lsat_1_v5_gn_4_2120' => 'lsa', 'Lsat_1_v5_gn_4_75761' => 'lsa', 'Lsat_1_v5_gn_5_10920' => 'lsa', 'Manes.02G099900' => 'mes', 'Manes.11G096200' => 'mes', 'Manes.12G007200' => 'mes', 'Manes.14G048300' => 'mes', 'Manes.17G114700' => 'mes', 'Mapoly0002s0070' => 'mpo', 'Mapoly0029s0099' => 'mpo', 'MBI07_g24742_MAGBIO' => 'mbi', 'MBI10_g27988_MAGBIO' => 'mbi', 'MBI11_g13057_MAGBIO' => 'mbi', 'MD02G1137200' => 'mdo', 'MD06G1137200' => 'mdo', 'MD07G1122300' => 'mdo', 'MD09G1078200' => 'mdo', 'MD13G1123700' => 'mdo', 'MD14G1151900' => 'mdo', 'MD17G1030900' => 'mdo', 'MD17G1068200' => 'mdo', 'MD17G1068600' => 'mdo', 'Medtr3g077540' => 'mtr', 'Medtr4g105530' => 'mtr', 'Medtr8g076580' => 'mtr', 'Medtr8g076590' => 'mtr', 'Medtr8g096410' => 'mtr', 'MELO3C016411.2' => 'cme', 'MELO3C017780.2' => 'cme', 'MELO3C022560.2' => 'cme', 'MELO3C026187.2' => 'cme', 'MELO3C026286.2' => 'cme', 'MELO3C032854.2' => 'cme', 'Migut.H02495' => 'egut', 'Migut.I00561' => 'egut', 'Migut.K01015' => 'egut', 'Migut.K01016' => 'egut', 'Migut.L00743' => 'egut', 'Migut.L00744' => 'egut', 'Migut.L00746' => 'egut', 'Migut.L00798' => 'egut', 'Migut.L00799' => 'egut', 'Migut.N02096' => 'egut', 'MSTRG.11259' => 'ama', 'MSTRG.23142' => 'ama', 'MSTRG.2499' => 'ama', 'Nitab4.5_0000003g0730' => 'nta', 'Nitab4.5_0000137g0020' => 'nta', 'Nitab4.5_0000721g0210' => 'nta', 'Nitab4.5_0000723g0050' => 'nta', 'Nitab4.5_0000913g0070' => 'nta', 'Nitab4.5_0001332g0040' => 'nta', 'Nitab4.5_0001771g0050' => 'nta', 'Nitab4.5_0001918g0050' => 'nta', 'Nitab4.5_0002686g0030' => 'nta', 'Nitab4.5_0003156g0020' => 'nta', 'Nitab4.5_0003383g0040' => 'nta', 'Nitab4.5_0003918g0010' => 'nta', 'Nitab4.5_0006760g0010' => 'nta', 'Nn1g05981' => 'nnu', 'Nn1g06288' => 'nnu', 'Nn3g16371' => 'nnu', 'Nn3g16786' => 'nnu', 'Nn4g22232' => 'nnu', 'Oeu005144.1' => 'oeu', 'Oeu005145.1' => 'oeu', 'Oeu011348.1' => 'oeu', 'Oeu016415.1' => 'oeu', 'Oeu023501.1' => 'oeu', 'Oeu044473.1' => 'oeu', 'Oeu048892.2' => 'oeu', 'Os01g0549200' => 'osa', 'Os02g0469300' => 'osa', 'Os04g0311100' => 'osa', 'Os06g0474900' => 'osa', 'Os10g0181700' => 'osa', 'Os11g0454800' => 'osa', 'Peaxi162Scf00037g00714' => 'pax', 'Peaxi162Scf00084g01217' => 'pax', 'Peaxi162Scf00257g00217' => 'pax', 'Peaxi162Scf00516g00215' => 'pax', 'Peaxi162Scf00689g00123' => 'pax', 'PGR044G2719' => 'pgr', 'PGR083G1360' => 'pgr', 'PGR102G2849' => 'pgr', 'PGR119G2534' => 'pgr', 'PGSC0003DMG400003538' => 'stu', 'PGSC0003DMG400028138' => 'stu', 'PGSC0003DMG400031732' => 'stu', 'PGSC0003DMG400038165' => 'stu', 'Phvul.002G284600' => 'pvu', 'Phvul.003G258200' => 'pvu', 'Phvul.009G176500' => 'pvu', 'Potri.003G167201' => 'ptr', 'Potri.005G118400' => 'ptr', 'Potri.012G089000' => 'ptr', 'Potri.012G102800' => 'ptr', 'Potri.015G079400' => 'ptr', 'Potri.015G100900' => 'ptr', 'Pp3c14_9810' => 'ppa', 'Pp3c15_10450' => 'ppa', 'Pp3c20_19150' => 'ppa', 'Pp3c23_12740' => 'ppa', 'Pp3c23_6310' => 'ppa', 'Pp3c24_3720' => 'ppa', 'Pp3c27_2580' => 'ppa', 'Pp3c9_8990' => 'ppa', 'PRCOL_00002854' => 'pco', 'Prupe.1G221200' => 'ppe', 'Prupe.3G289000' => 'ppe', 'Prupe.5G147000' => 'ppe', 'Prupe.6G157300' => 'ppe', 'Prupe.7G163400' => 'ppe', 'Psat0s2177g0040' => 'psa', 'Psat3g174760' => 'psa', 'Psat3g192160' => 'psa', 'Psat4g058520' => 'psa', 'Psat4g096840' => 'psa', 'Psat7g037320' => 'psa', 'PSO017G1274' => 'pso', 'PSO017G5166' => 'pso', 'PSO063G4558' => 'pso', 'PSO170G4458' => 'pso', 'PSO170G5005' => 'pso', 'PSO210G6156' => 'pso', 'PSO210G6635' => 'pso', 'PSO210G7397' => 'pso', 'PSO210G7700' => 'pso', 'PSO455G0035' => 'pso', 'PSO455G0180' => 'pso', 'PSO478G4515' => 'pso', 'PSO832G1305' => 'pso', 'PSO832G3489' => 'pso', 'QL02p075247' => 'qlo', 'QL03p051148' => 'qlo', 'QL05p010313' => 'qlo', 'QL06p034627' => 'qlo', 'QL10p001889' => 'qlo', 'QL10p010846' => 'qlo', 'RcHm_v2.0_Chr1g0350621' => 'rch', 'RcHm_v2.0_Chr1g0350641' => 'rch', 'RcHm_v2.0_Chr2g0092891' => 'rch', 'RcHm_v2.0_Chr2g0100251' => 'rch', 'RcHm_v2.0_Chr2g0158661' => 'rch', 'RcHm_v2.0_Chr2g0172741' => 'rch', 'RcHm_v2.0_Chr4g0429571' => 'rch', 'RcHm_v2.0_Chr5g0042471' => 'rch', 'RcHm_v2.0_Chr7g0189451' => 'rch', 'Rhsim08G0052000' => 'rsi', 'Rhsim08G0174400' => 'rsi', 'Rhsim08G0193200' => 'rsi', 'Rhsim10G0214800' => 'rsi', 'Rhsim10G0214900' => 'rsi', 'Rhsim10G0215000' => 'rsi', 'Rhsim12G0022900' => 'rsi', 'Rhsim12G0177500' => 'rsi', 'Rhsim12G0177700' => 'rsi', 'Sabra03G0122600' => 'sbr', 'Sabra05G0097400' => 'sbr', 'Sabra12G0064100' => 'sbr', 'Sabra15G0121300' => 'sbr', 'SalBow2G0642' => 'sbo', 'SalBow5G2667' => 'sbo', 'SalBow5G4873' => 'sbo', 'SalBow8G2395' => 'sbo', 'Sc03g0003290' => 'sci', 'Sc10g0010130' => 'sci', 'Sc22g0003650' => 'sci', 'Sed0001603' => 'sed', 'Sed0004259' => 'sed', 'Sed0006789' => 'sed', 'Sed0011838' => 'sed', 'Sed0012964' => 'sed', 'Sed0016383' => 'sed', 'Sed0019010' => 'sed', 'Sed0020188' => 'sed', 'SEGI_04702' => 'sgi', 'SEGI_17231' => 'sgi', 'SEGI_18877' => 'sgi', 'SEGI_25196' => 'sgi', 'SEGI_25515' => 'sgi', 'SEGI_28445' => 'sgi', 'SEGI_37452' => 'sgi', 'SGA_v2.0_scaffold188G40336' => 'sas', 'SGA_v2.0_scaffold228G43247' => 'sas', 'SGA_v2.0_scaffold280G46853' => 'sas', 'SGA_v2.0_scaffold34G13808' => 'sas', 'SGA_v2.0_scaffold40G15576' => 'sas', 'SGA_v2.0_scaffold611G53188' => 'sas', 'SGA_v2.0_scaffold78G25461' => 'sas', 'SGA_v2.0_scaffold90G27888' => 'sas', 'SHI08601' => 'shi', 'SHI08606' => 'shi', 'SHI17117' => 'shi', 'SHI17119' => 'shi', 'SMO118G0201' => 'smo', 'SMO169G0247' => 'smo', 'SMO176G0006' => 'smo', 'SMO176G0015' => 'smo', 'SMO202G0006' => 'smo', 'SMO240G0050' => 'smo', 'SMO286G0009' => 'smo', 'SMO338G0033' => 'smo', 'SMO356G0533' => 'smo', 'SMO364G0382' => 'smo', 'SMO367G0166' => 'smo', 'SMO367G1098' => 'smo', 'Solyc01g009920.3' => 'sly', 'Solyc01g099300.3' => 'sly', 'Solyc02g084700.3' => 'sly', 'Solyc03g097520.3' => 'sly', 'Solyc06g071580.3' => 'sly', 'Solyc10g081760.3' => 'sly', 'Sopen01g005480' => 'spe', 'Sopen01g042850' => 'spe', 'Sopen02g029370' => 'spe', 'Sopen03g028280' => 'spe', 'Sopen06g027870' => 'spe', 'Sopen10g032270' => 'spe', 'Sp5g18180' => 'spa', 'Sp6g12880' => 'spa', 'Sp6g30850' => 'spa', 'Sp7g22960' => 'spa', 'Sp7g34010' => 'spa', 'SpUn1326_0010' => 'spa', 'TAR371G0242' => 'tar', 'TAR622G0638' => 'tar', 'TAR628G1548' => 'tar', 'TAR629G1079' => 'tar', 'TAR629G3413' => 'tar', 'THA.LOC104804249' => 'tha', 'THA.LOC104808315' => 'tha', 'THA.LOC104809238' => 'tha', 'THA.LOC104825484' => 'tha', 'Thecc.01G025500' => 'tca', 'Thecc.03G015800' => 'tca', 'Thecc.03G018000' => 'tca', 'Thecc.03G134800' => 'tca', 'Thecc.04G014700' => 'tca', 'Thhalv10006991m.g' => 'esa', 'Thhalv10012707m.g' => 'esa', 'Thhalv10015739m.g' => 'esa', 'Thhalv10024553m.g' => 'esa', 'Thhalv10024673m.g' => 'esa', 'Thhalv10029187m.g' => 'esa', 'TPR.G12971' => 'tpr', 'TPR.G29396' => 'tpr', 'TPR.G33376' => 'tpr', 'TPR.G35508' => 'tpr', 'TPR.G35516' => 'tpr', 'TPR.G37317' => 'tpr', 'TPR.G37389' => 'tpr', 'TPR.G37523' => 'tpr', 'TPR.G559' => 'tpr', 'TWI14G0070' => 'twi', 'TWI14G0729' => 'twi', 'TWI18G0596' => 'twi', 'TWI39G0780' => 'twi', 'TWI39G0850' => 'twi', 'TWI73G1052' => 'twi', 'unitig_52.g17485' => 'ugi', 'unitig_61.g26355' => 'ugi', 'vmacro01040' => 'vma', 'vmacro16731' => 'vma', 'vmacro18270' => 'vma', 'vmacro19142' => 'vma', 'vmacro19407' => 'vma', 'vmacro19408' => 'vma', 'vmacro21899' => 'vma', 'vmacro21900' => 'vma', 'vmacro21901' => 'vma', 'VMungo0251G0490' => 'vmu', 'VMungo0251G1748' => 'vmu', 'VMungo1309G0421' => 'vmu', 'Zm00001eb086500' => 'zma', 'Zm00001eb150680' => 'zma', 'Zm00001eb162330' => 'zma', 'Zm00001eb203130' => 'zma', 'Zm00001eb369480' => 'zma', 'Zm00001eb382340' => 'zma', 'Zm00001eb416360' => 'zma' ) $gf_id = 'HOM05D000902' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000902' ) $data_identifier = 'HOM05D000902' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 13, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 10, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 6, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 9, 'hma' => (int) 12, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 4, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 6, 'ppa' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 6, 'rch' => (int) 9, 'rsi' => (int) 9, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 12, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 3, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416360' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000902', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '663', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02470' => 'bna', 'A01p16260' => 'bna', 'A02p01680' => 'bna', 'A03p16600' => 'bna', 'A03p55660' => 'bna', 'A03p64160' => 'bna', 'A03p64170' => 'bna', 'A08p31900' => 'bna', 'A09p59530' => 'bna', 'A10p08230' => 'bna', 'A10p25090' => 'bna', 'Aa31LG3G7100' => 'aar', 'Aa31LG3G7110' => 'aar', 'Aa31LG6G13160' => 'aar', 'Aa31LG7G10770' => 'aar', 'Aa31LG7G3830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2723' => 'aag', 'Actinidia08045' => 'ach', 'Actinidia08888' => 'ach', 'Actinidia18333' => 'ach', 'Actinidia19334' => 'ach', 'Actinidia25552' => 'ach', 'Actinidia26089' => 'ach', 'Actinidia30615' => 'ach', 'Actinidia30616' => 'ach', 'Actinidia33083' => 'ach', 'Actinidia35762' => 'ach', 'Ah.02g110620' => 'amhyb', 'Ah.11g046390' => 'amhyb', 'AL1G31670' => 'aly', 'AL6G23730' => 'aly', 'AL7G14740' => 'aly', 'AL7G14750' => 'aly', 'AL7G14760' => 'aly', 'AL7G28220' => 'aly', 'AL8G24940' => 'aly', 'Aqoxy3G01665' => 'aox', 'Aqoxy3G02853' => 'aox', 'Aqoxy5G01513' => 'aox', 'Aqoxy5G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8SKA4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ75LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKDA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0LJZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7REX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZP4YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWX7I5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2QKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS0L9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPCD8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q161UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC7XCF' => 'arhy', 'AT1G19100' => 'ath', 'AT4G24970' => 'ath', 'AT4G36270' => 'ath', 'AT4G36280' => 'ath', 'AT4G36290' => 'ath', 'AT5G13130' => 'ath', 'AT5G50780' => 'ath', 'ATR0582G266' => 'atr', 'ATR0661G195' => 'atr', 'ATR1152G031' => 'atr', 'Atru.chr11.2382' => 'acertr', 'Atru.chr12.2337' => 'acertr', 'Atru.chr3.744' => 'acertr', 'Atru.chr6.1870' => 'acertr', 'Atru.chr9.2515' => 'acertr', 'AUR62004120' => 'cqu', 'AUR62005667' => 'cqu', 'AUR62007634' => 'cqu', 'AUR62008186' => 'cqu', 'AUR62008187' => 'cqu', 'AUR62008188' => 'cqu', 'AUR62027954' => 'cqu', 'AUR62028766' => 'cqu', 'AUR62028767' => 'cqu', 'AUR62028768' => 'cqu', 'AUR62028886' => 'cqu', 'AUR62029563' => 'cqu', 'AUR62038832' => 'cqu', 'BcaB01g04149' => 'bca', 'BcaB03g12940' => 'bca', 'BcaB03g13090' => 'bca', 'BcaB03g14466' => 'bca', 'BcaB05g24035' => 'bca', 'BcaC01g06050' => 'bca', 'BcaC04g19148' => 'bca', 'BcaC04g20761' => 'bca', 'BcaC06g32845' => 'bca', 'BcaC07g41274' => 'bca', 'BcaC09g50827' => 'bca', 'BcaNung00741' => 'bca', 'BcaNung00742' => 'bca', 'BcaNung01859' => 'bca', 'BcaNung03985' => 'bca', 'BcaNung03989' => 'bca', 'BcaNung05661' => 'bca', 'BolC1t00257H' => 'bol', 'BolC1t01956H' => 'bol', 'BolC2t06534H' => 'bol', 'BolC3t14334H' => 'bol', 'BolC5t30451H' => 'bol', 'BolC7t45880H' => 'bol', 'BolC7t46586H' => 'bol', 'BolC8t49301H' => 'bol', 'BolC8t51837H' => 'bol', 'BolC9t56822H' => 'bol', 'BolC9t59235H' => 'bol', 'BraA01t00234Z' => 'bra', 'BraA01t01563Z' => 'bra', 'BraA02t05147Z' => 'bra', 'BraA03t10947Z' => 'bra', 'BraA03t14633Z' => 'bra', 'BraA08t35112Z' => 'bra', 'BraA09t41330Z' => 'bra', 'BraA10t44570Z' => 'bra', 'C01p02670' => 'bna', 'C01p20260' => 'bna', 'C02p05890' => 'bna', 'C03p19530' => 'bna', 'C05p17470' => 'bna', 'C07p53900' => 'bna', 'C07p61630' => 'bna', 'C08p16800' => 'bna', 'C08p42810' => 'bna', 'C09p39480' => 'bna', 'C09p63980' => 'bna', 'CAN.G1001.7' => 'can', 'CAN.G1034.55' => 'can', 'CAN.G143.7' => 'can', 'CAN.G3340.1' => 'can', 'CAN.G358.19' => 'can', 'CAN.G373.2' => 'can', 'CAN.G674.16' => 'can', 'CAN.G674.17' => 'can', 'CAN.G674.18' => 'can', 'CAN.G732.2' => 'can', 'CAN.G732.3' => 'can', 'CAN.G993.39' => 'can', 'CANSAT01G2052' => 'cansat', 'CANSAT80G0070' => 'cansat', 'CANSAT80G0483' => 'cansat', 'CANSAT80G0625' => 'cansat', 'CARHR019690' => 'chi', 'CARHR080280' => 'chi', 'CARHR152750' => 'chi', 'CARHR152760' => 'chi', 'CARHR152770' => 'chi', 'CARHR200340' => 'chi', 'CARHR232370' => 'chi', 'CARHR244670' => 'chi', 'CARHR244680' => 'chi', 'CARHR257520' => 'chi', 'Carub.0001s1872' => 'cru', 'Carub.0006s1130' => 'cru', 'Carub.0007s0396' => 'cru', 'Carub.0007s0397' => 'cru', 'Carub.0007s1608' => 'cru', 'Carub.0008s1068' => 'cru', 'Carub.0008s1077' => 'cru', 'Ca_16158_v3' => 'car', 'Ca_17571_v3' => 'car', 'Ca_21936_v3' => 'car', 'Ca_22350_v3' => 'car', 'CBR_g22445' => 'cbr', 'CBR_g26290' => 'cbr', 'Cc04_g09610' => 'ccan', 'Cc04_g12280' => 'ccan', 'Cc07_g10230' => 'ccan', 'CDE02G0093' => 'cde', 'CDE02G0701' => 'cde', 'CDE04G1050' => 'cde', 'CDE05G1833' => 'cde', 'CDE05G3058' => 'cde', 'CDE05G3380' => 'cde', 'CDE06G0536' => 'cde', 'Cfa006923' => 'cfa', 'Cfa009402' => 'cfa', 'Cfa018751' => 'cfa', 'Cfa019164' => 'cfa', 'Cfa022935' => 'cfa', 'Ciclev10019081m.g' => 'ccl', 'Ciclev10025076m.g' => 'ccl', 'Ciclev10030712m.g' => 'ccl', 'Ciclev10033760m.g' => 'ccl', 'CiPaw.05G105600' => 'cil', 'CiPaw.08G136700' => 'cil', 'CiPaw.11G003900' => 'cil', 'CiPaw.11G023700' => 'cil', 'CiPaw.12G003700' => 'cil', 'ClCG06G017100' => 'cla', 'ClCG06G018110' => 'cla', 'ClCG07G008800' => 'cla', 'ClCG07G015330' => 'cla', 'COL.COLO4_13698' => 'col', 'COL.COLO4_16659' => 'col', 'COL.COLO4_21986' => 'col', 'COL.COLO4_24049' => 'col', 'COL.COLO4_29061' => 'col', 'COL.COLO4_29075' => 'col', 'COL.COLO4_30094' => 'col', 'Cpa.g.c33689' => 'cpa', 'Cpa.g.sc108.39' => 'cpa', 'Cpa.g.sc108.41' => 'cpa', 'Cpa.g.sc1163.1' => 'cpa', 'Cpa.g.sc4.155' => 'cpa', 'Cpa.g.sc6.194' => 'cpa', 'CsaV3_1G000340' => 'csa', 'CsaV3_1G001400' => 'csa', 'CsaV3_4G002220' => 'csa', 'CsaV3_4G005370' => 'csa', 'CSS0007487' => 'camsi', 'CSS0008066' => 'camsi', 'CSS0009120' => 'camsi', 'CSS0015512' => 'camsi', 'CSS0022409' => 'camsi', 'CSS0025358' => 'camsi', 'CSS0044547' => 'camsi', 'DCAR_013057' => 'dca', 'DCAR_015058' => 'dca', 'DCAR_016027' => 'dca', 'DCAR_017327' => 'dca', 'DCAR_020743' => 'dca', 'DCAR_026157' => 'dca', 'DCAR_032339' => 'dca', 'DCAR_032340' => 'dca', 'Dinv11200' => 'din', 'Dinv11201' => 'din', 'Dinv20631' => 'din', 'Dinv23182' => 'din', 'Dinv33466' => 'din', 'Dinv33583' => 'din', 'Dinv38565' => 'din', 'Duzib068G0200' => 'dzi', 'Duzib147G0132' => 'dzi', 'Duzib147G0635' => 'dzi', 'Duzib205G1670' => 'dzi', 'Duzib251G0606' => 'dzi', 'ECA232G3336' => 'eca', 'ECA232G3763' => 'eca', 'ECA232G4845' => 'eca', 'ECA234G1607' => 'eca', 'ECA246G0932' => 'eca', 'ECA247G0781' => 'eca', 'ECA247G1932' => 'eca', 'ECA247G2079' => 'eca', 'ECA247G3338' => 'eca', 'ECA247G4115' => 'eca', 'EL10Ac3g06552' => 'bvu', 'EL10Ac5g10721' => 'bvu', 'EL10Ac5g10722' => 'bvu', 'EL10Ac5g10723' => 'bvu', 'EL10Ac5g11361' => 'bvu', 'EL10Ac6g13553' => 'bvu', 'EL10As8g23872' => 'bvu', 'Eucgr.B00250' => 'egr', 'Eucgr.B00251' => 'egr', 'Eucgr.B03533' => 'egr', 'Eucgr.I02381' => 'egr', 'Eucgr.K02700' => 'egr', 'FAN02G0174' => 'fan', 'FAN02G3146' => 'fan', 'FAN04G1672' => 'fan', 'FAN04G2273' => 'fan', 'FAN05G2791' => 'fan', 'FAN05G4035' => 'fan', 'FAN07G0834' => 'fan', 'FAN08G1198' => 'fan', 'FAN09G4182' => 'fan', 'FAN12G0496' => 'fan', 'FAN13G1027' => 'fan', 'FAN13G2951' => 'fan', 'FAN14G0705' => 'fan', 'FAN14G0720' => 'fan', 'FAN17G0201' => 'fan', 'FAN17G2665' => 'fan', 'FAN18G1456' => 'fan', 'FAN18G1525' => 'fan', 'FAN18G3500' => 'fan', 'FAN28G2670' => 'fan', 'FvH4_1g12391' => 'fve', 'FvH4_4g23220' => 'fve', 'FvH4_5g08810' => 'fve', 'FvH4_5g28960' => 'fve', 'FvH4_6g42820' => 'fve', 'FvH4_6g51110' => 'fve', 'Glyma.02G051802' => 'gma', 'Glyma.04G185300' => 'gma', 'Glyma.05G202900' => 'gma', 'Glyma.08G010300' => 'gma', 'Glyma.16G131900' => 'gma', 'Glyma.17G087900' => 'gma', 'Gohir.A07G048600' => 'ghi', 'Gohir.A11G179000' => 'ghi', 'Gohir.A12G140900' => 'ghi', 'Gohir.A12G140950' => 'ghi', 'Gohir.A12G191700' => 'ghi', 'Gohir.A13G086300' => 'ghi', 'Gohir.D07G052900' => 'ghi', 'Gohir.D11G186600' => 'ghi', 'Gohir.D12G145575' => 'ghi', 'Gohir.D12G145650' => 'ghi', 'Gohir.D12G145725' => 'ghi', 'Gohir.D12G194050' => 'ghi', 'Gohir.D13G091800' => 'ghi', 'Gorai.001G055900' => 'gra', 'Gorai.007G198400' => 'gra', 'Gorai.008G157000' => 'gra', 'Gorai.008G157100' => 'gra', 'Gorai.008G208700' => 'gra', 'Gorai.010G138700' => 'gra', 'GSVIVG01000977001' => 'vvi', 'GSVIVG01007708001' => 'vvi', 'GSVIVG01008587001' => 'vvi', 'GSVIVG01018849001' => 'vvi', 'GSVIVG01032432001' => 'vvi', 'HanXRQChr02g0034131' => 'han', 'HanXRQChr02g0035981' => 'han', 'HanXRQChr02g0035991' => 'han', 'HanXRQChr05g0155611' => 'han', 'HanXRQChr05g0155621' => 'han', 'HanXRQChr08g0236501' => 'han', 'HanXRQChr09g0261321' => 'han', 'HanXRQChr09g0272081' => 'han', 'HanXRQChr10g0310741' => 'han', 'HanXRQChr11g0325591' => 'han', 'HanXRQChr12g0385691' => 'han', 'HanXRQChr13g0387801' => 'han', 'HanXRQChr15g0463011' => 'han', 'Haze_03826' => 'cav', 'Haze_03827' => 'cav', 'Haze_07183' => 'cav', 'Haze_07537' => 'cav', 'Haze_07539' => 'cav', 'Haze_12461' => 'cav', 'Haze_16115' => 'cav', 'Haze_16808' => 'cav', 'Haze_18531' => 'cav', 'Hma1.2p1_0046F.1_g026700' => 'hma', 'Hma1.2p1_0046F.1_g026710' => 'hma', 'Hma1.2p1_0168F.1_g074340' => 'hma', 'Hma1.2p1_0266F.1_g107030' => 'hma', 'Hma1.2p1_0266F.1_g107060' => 'hma', 'Hma1.2p1_0275F.1_g110510' => 'hma', 'Hma1.2p1_0592F.1_g185490' => 'hma', 'Hma1.2p1_0592F.1_g185500' => 'hma', 'Hma1.2p1_0592F.1_g185510' => 'hma', 'Hma1.2p1_0592F.1_g185520' => 'hma', 'Hma1.2p1_0592F.1_g185530' => 'hma', 'Hma1.2p1_0818F.1_g223450' => 'hma', 'HPP92_009708' => 'vpl', 'HPP92_009793' => 'vpl', 'HPP92_009796' => 'vpl', 'HPP92_009797' => 'vpl', 'HPP92_014940' => 'vpl', 'HPP92_014988' => 'vpl', 'Hund02463' => 'sun', 'Hund02760' => 'sun', 'Hund05071' => 'sun', 'Hund10108' => 'sun', 'Hund11204' => 'sun', 'Hund14016' => 'sun', 'Hund16464' => 'sun', 'Lalb_Chr09g0333391' => 'lal', 'Lalb_Chr11g0070461' => 'lal', 'Lalb_Chr12g0201671' => 'lal', 'Lalb_Chr13g0297161' => 'lal', 'Lj1g0002823' => 'lja', 'Lj3C1074T6' => 'lonja', 'Lj4A212T28' => 'lonja', 'Lj4g0005516' => 'lja', 'Lj4g0013705' => 'lja', 'Lj4g0027865' => 'lja', 'Lj5C92G16' => 'lonja', 'Lj5C92T12' => 'lonja', 'Lj7C596T3' => 'lonja', 'Lj9A446G59' => 'lonja', 'Lj9A482G21' => 'lonja', 'Lsat_1_v5_gn_1_28261' => 'lsa', 'Lsat_1_v5_gn_1_28281' => 'lsa', 'Lsat_1_v5_gn_1_32721' => 'lsa', 'Lsat_1_v5_gn_4_151760' => 'lsa', 'Lsat_1_v5_gn_4_2120' => 'lsa', 'Lsat_1_v5_gn_4_75761' => 'lsa', 'Lsat_1_v5_gn_5_10920' => 'lsa', 'Manes.02G099900' => 'mes', 'Manes.11G096200' => 'mes', 'Manes.12G007200' => 'mes', 'Manes.14G048300' => 'mes', 'Manes.17G114700' => 'mes', 'Mapoly0002s0070' => 'mpo', 'Mapoly0029s0099' => 'mpo', 'MBI07_g24742_MAGBIO' => 'mbi', 'MBI10_g27988_MAGBIO' => 'mbi', 'MBI11_g13057_MAGBIO' => 'mbi', 'MD02G1137200' => 'mdo', 'MD06G1137200' => 'mdo', 'MD07G1122300' => 'mdo', 'MD09G1078200' => 'mdo', 'MD13G1123700' => 'mdo', 'MD14G1151900' => 'mdo', 'MD17G1030900' => 'mdo', 'MD17G1068200' => 'mdo', 'MD17G1068600' => 'mdo', 'Medtr3g077540' => 'mtr', 'Medtr4g105530' => 'mtr', 'Medtr8g076580' => 'mtr', 'Medtr8g076590' => 'mtr', 'Medtr8g096410' => 'mtr', 'MELO3C016411.2' => 'cme', 'MELO3C017780.2' => 'cme', 'MELO3C022560.2' => 'cme', 'MELO3C026187.2' => 'cme', 'MELO3C026286.2' => 'cme', 'MELO3C032854.2' => 'cme', 'Migut.H02495' => 'egut', 'Migut.I00561' => 'egut', 'Migut.K01015' => 'egut', 'Migut.K01016' => 'egut', 'Migut.L00743' => 'egut', 'Migut.L00744' => 'egut', 'Migut.L00746' => 'egut', 'Migut.L00798' => 'egut', 'Migut.L00799' => 'egut', 'Migut.N02096' => 'egut', 'MSTRG.11259' => 'ama', 'MSTRG.23142' => 'ama', 'MSTRG.2499' => 'ama', 'Nitab4.5_0000003g0730' => 'nta', 'Nitab4.5_0000137g0020' => 'nta', 'Nitab4.5_0000721g0210' => 'nta', 'Nitab4.5_0000723g0050' => 'nta', 'Nitab4.5_0000913g0070' => 'nta', 'Nitab4.5_0001332g0040' => 'nta', 'Nitab4.5_0001771g0050' => 'nta', 'Nitab4.5_0001918g0050' => 'nta', 'Nitab4.5_0002686g0030' => 'nta', 'Nitab4.5_0003156g0020' => 'nta', 'Nitab4.5_0003383g0040' => 'nta', 'Nitab4.5_0003918g0010' => 'nta', 'Nitab4.5_0006760g0010' => 'nta', 'Nn1g05981' => 'nnu', 'Nn1g06288' => 'nnu', 'Nn3g16371' => 'nnu', 'Nn3g16786' => 'nnu', 'Nn4g22232' => 'nnu', 'Oeu005144.1' => 'oeu', 'Oeu005145.1' => 'oeu', 'Oeu011348.1' => 'oeu', 'Oeu016415.1' => 'oeu', 'Oeu023501.1' => 'oeu', 'Oeu044473.1' => 'oeu', 'Oeu048892.2' => 'oeu', 'Os01g0549200' => 'osa', 'Os02g0469300' => 'osa', 'Os04g0311100' => 'osa', 'Os06g0474900' => 'osa', 'Os10g0181700' => 'osa', 'Os11g0454800' => 'osa', 'Peaxi162Scf00037g00714' => 'pax', 'Peaxi162Scf00084g01217' => 'pax', 'Peaxi162Scf00257g00217' => 'pax', 'Peaxi162Scf00516g00215' => 'pax', 'Peaxi162Scf00689g00123' => 'pax', 'PGR044G2719' => 'pgr', 'PGR083G1360' => 'pgr', 'PGR102G2849' => 'pgr', 'PGR119G2534' => 'pgr', 'PGSC0003DMG400003538' => 'stu', 'PGSC0003DMG400028138' => 'stu', 'PGSC0003DMG400031732' => 'stu', 'PGSC0003DMG400038165' => 'stu', 'Phvul.002G284600' => 'pvu', 'Phvul.003G258200' => 'pvu', 'Phvul.009G176500' => 'pvu', 'Potri.003G167201' => 'ptr', 'Potri.005G118400' => 'ptr', 'Potri.012G089000' => 'ptr', 'Potri.012G102800' => 'ptr', 'Potri.015G079400' => 'ptr', 'Potri.015G100900' => 'ptr', 'Pp3c14_9810' => 'ppa', 'Pp3c15_10450' => 'ppa', 'Pp3c20_19150' => 'ppa', 'Pp3c23_12740' => 'ppa', 'Pp3c23_6310' => 'ppa', 'Pp3c24_3720' => 'ppa', 'Pp3c27_2580' => 'ppa', 'Pp3c9_8990' => 'ppa', 'PRCOL_00002854' => 'pco', 'Prupe.1G221200' => 'ppe', 'Prupe.3G289000' => 'ppe', 'Prupe.5G147000' => 'ppe', 'Prupe.6G157300' => 'ppe', 'Prupe.7G163400' => 'ppe', 'Psat0s2177g0040' => 'psa', 'Psat3g174760' => 'psa', 'Psat3g192160' => 'psa', 'Psat4g058520' => 'psa', 'Psat4g096840' => 'psa', 'Psat7g037320' => 'psa', 'PSO017G1274' => 'pso', 'PSO017G5166' => 'pso', 'PSO063G4558' => 'pso', 'PSO170G4458' => 'pso', 'PSO170G5005' => 'pso', 'PSO210G6156' => 'pso', 'PSO210G6635' => 'pso', 'PSO210G7397' => 'pso', 'PSO210G7700' => 'pso', 'PSO455G0035' => 'pso', 'PSO455G0180' => 'pso', 'PSO478G4515' => 'pso', 'PSO832G1305' => 'pso', 'PSO832G3489' => 'pso', 'QL02p075247' => 'qlo', 'QL03p051148' => 'qlo', 'QL05p010313' => 'qlo', 'QL06p034627' => 'qlo', 'QL10p001889' => 'qlo', 'QL10p010846' => 'qlo', 'RcHm_v2.0_Chr1g0350621' => 'rch', 'RcHm_v2.0_Chr1g0350641' => 'rch', 'RcHm_v2.0_Chr2g0092891' => 'rch', 'RcHm_v2.0_Chr2g0100251' => 'rch', 'RcHm_v2.0_Chr2g0158661' => 'rch', 'RcHm_v2.0_Chr2g0172741' => 'rch', 'RcHm_v2.0_Chr4g0429571' => 'rch', 'RcHm_v2.0_Chr5g0042471' => 'rch', 'RcHm_v2.0_Chr7g0189451' => 'rch', 'Rhsim08G0052000' => 'rsi', 'Rhsim08G0174400' => 'rsi', 'Rhsim08G0193200' => 'rsi', 'Rhsim10G0214800' => 'rsi', 'Rhsim10G0214900' => 'rsi', 'Rhsim10G0215000' => 'rsi', 'Rhsim12G0022900' => 'rsi', 'Rhsim12G0177500' => 'rsi', 'Rhsim12G0177700' => 'rsi', 'Sabra03G0122600' => 'sbr', 'Sabra05G0097400' => 'sbr', 'Sabra12G0064100' => 'sbr', 'Sabra15G0121300' => 'sbr', 'SalBow2G0642' => 'sbo', 'SalBow5G2667' => 'sbo', 'SalBow5G4873' => 'sbo', 'SalBow8G2395' => 'sbo', 'Sc03g0003290' => 'sci', 'Sc10g0010130' => 'sci', 'Sc22g0003650' => 'sci', 'Sed0001603' => 'sed', 'Sed0004259' => 'sed', 'Sed0006789' => 'sed', 'Sed0011838' => 'sed', 'Sed0012964' => 'sed', 'Sed0016383' => 'sed', 'Sed0019010' => 'sed', 'Sed0020188' => 'sed', 'SEGI_04702' => 'sgi', 'SEGI_17231' => 'sgi', 'SEGI_18877' => 'sgi', 'SEGI_25196' => 'sgi', 'SEGI_25515' => 'sgi', 'SEGI_28445' => 'sgi', 'SEGI_37452' => 'sgi', 'SGA_v2.0_scaffold188G40336' => 'sas', 'SGA_v2.0_scaffold228G43247' => 'sas', 'SGA_v2.0_scaffold280G46853' => 'sas', 'SGA_v2.0_scaffold34G13808' => 'sas', 'SGA_v2.0_scaffold40G15576' => 'sas', 'SGA_v2.0_scaffold611G53188' => 'sas', 'SGA_v2.0_scaffold78G25461' => 'sas', 'SGA_v2.0_scaffold90G27888' => 'sas', 'SHI08601' => 'shi', 'SHI08606' => 'shi', 'SHI17117' => 'shi', 'SHI17119' => 'shi', 'SMO118G0201' => 'smo', 'SMO169G0247' => 'smo', 'SMO176G0006' => 'smo', 'SMO176G0015' => 'smo', 'SMO202G0006' => 'smo', 'SMO240G0050' => 'smo', 'SMO286G0009' => 'smo', 'SMO338G0033' => 'smo', 'SMO356G0533' => 'smo', 'SMO364G0382' => 'smo', 'SMO367G0166' => 'smo', 'SMO367G1098' => 'smo', 'Solyc01g009920.3' => 'sly', 'Solyc01g099300.3' => 'sly', 'Solyc02g084700.3' => 'sly', 'Solyc03g097520.3' => 'sly', 'Solyc06g071580.3' => 'sly', 'Solyc10g081760.3' => 'sly', 'Sopen01g005480' => 'spe', 'Sopen01g042850' => 'spe', 'Sopen02g029370' => 'spe', 'Sopen03g028280' => 'spe', 'Sopen06g027870' => 'spe', 'Sopen10g032270' => 'spe', 'Sp5g18180' => 'spa', 'Sp6g12880' => 'spa', 'Sp6g30850' => 'spa', 'Sp7g22960' => 'spa', 'Sp7g34010' => 'spa', 'SpUn1326_0010' => 'spa', 'TAR371G0242' => 'tar', 'TAR622G0638' => 'tar', 'TAR628G1548' => 'tar', 'TAR629G1079' => 'tar', 'TAR629G3413' => 'tar', 'THA.LOC104804249' => 'tha', 'THA.LOC104808315' => 'tha', 'THA.LOC104809238' => 'tha', 'THA.LOC104825484' => 'tha', 'Thecc.01G025500' => 'tca', 'Thecc.03G015800' => 'tca', 'Thecc.03G018000' => 'tca', 'Thecc.03G134800' => 'tca', 'Thecc.04G014700' => 'tca', 'Thhalv10006991m.g' => 'esa', 'Thhalv10012707m.g' => 'esa', 'Thhalv10015739m.g' => 'esa', 'Thhalv10024553m.g' => 'esa', 'Thhalv10024673m.g' => 'esa', 'Thhalv10029187m.g' => 'esa', 'TPR.G12971' => 'tpr', 'TPR.G29396' => 'tpr', 'TPR.G33376' => 'tpr', 'TPR.G35508' => 'tpr', 'TPR.G35516' => 'tpr', 'TPR.G37317' => 'tpr', 'TPR.G37389' => 'tpr', 'TPR.G37523' => 'tpr', 'TPR.G559' => 'tpr', 'TWI14G0070' => 'twi', 'TWI14G0729' => 'twi', 'TWI18G0596' => 'twi', 'TWI39G0780' => 'twi', 'TWI39G0850' => 'twi', 'TWI73G1052' => 'twi', 'unitig_52.g17485' => 'ugi', 'unitig_61.g26355' => 'ugi', 'vmacro01040' => 'vma', 'vmacro16731' => 'vma', 'vmacro18270' => 'vma', 'vmacro19142' => 'vma', 'vmacro19407' => 'vma', 'vmacro19408' => 'vma', 'vmacro21899' => 'vma', 'vmacro21900' => 'vma', 'vmacro21901' => 'vma', 'VMungo0251G0490' => 'vmu', 'VMungo0251G1748' => 'vmu', 'VMungo1309G0421' => 'vmu', 'Zm00001eb086500' => 'zma', 'Zm00001eb150680' => 'zma', 'Zm00001eb162330' => 'zma', 'Zm00001eb203130' => 'zma', 'Zm00001eb369480' => 'zma', 'Zm00001eb382340' => 'zma', 'Zm00001eb416360' => 'zma' ), 'gf_id' => 'HOM05D000902', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000902' ), 'data_identifier' => 'HOM05D000902', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000902', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '663', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02470' => 'bna', 'A01p16260' => 'bna', 'A02p01680' => 'bna', 'A03p16600' => 'bna', 'A03p55660' => 'bna', 'A03p64160' => 'bna', 'A03p64170' => 'bna', 'A08p31900' => 'bna', 'A09p59530' => 'bna', 'A10p08230' => 'bna', 'A10p25090' => 'bna', 'Aa31LG3G7100' => 'aar', 'Aa31LG3G7110' => 'aar', 'Aa31LG6G13160' => 'aar', 'Aa31LG7G10770' => 'aar', 'Aa31LG7G3830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2723' => 'aag', 'Actinidia08045' => 'ach', 'Actinidia08888' => 'ach', 'Actinidia18333' => 'ach', 'Actinidia19334' => 'ach', 'Actinidia25552' => 'ach', 'Actinidia26089' => 'ach', 'Actinidia30615' => 'ach', 'Actinidia30616' => 'ach', 'Actinidia33083' => 'ach', 'Actinidia35762' => 'ach', 'Ah.02g110620' => 'amhyb', 'Ah.11g046390' => 'amhyb', 'AL1G31670' => 'aly', 'AL6G23730' => 'aly', 'AL7G14740' => 'aly', 'AL7G14750' => 'aly', 'AL7G14760' => 'aly', 'AL7G28220' => 'aly', 'AL8G24940' => 'aly', 'Aqoxy3G01665' => 'aox', 'Aqoxy3G02853' => 'aox', 'Aqoxy5G01513' => 'aox', 'Aqoxy5G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8SKA4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ75LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKDA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0LJZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7REX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZP4YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWX7I5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2QKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS0L9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPCD8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q161UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC7XCF' => 'arhy', 'AT1G19100' => 'ath', 'AT4G24970' => 'ath', 'AT4G36270' => 'ath', 'AT4G36280' => 'ath', 'AT4G36290' => 'ath', 'AT5G13130' => 'ath', 'AT5G50780' => 'ath', 'ATR0582G266' => 'atr', 'ATR0661G195' => 'atr', 'ATR1152G031' => 'atr', 'Atru.chr11.2382' => 'acertr', 'Atru.chr12.2337' => 'acertr', 'Atru.chr3.744' => 'acertr', 'Atru.chr6.1870' => 'acertr', 'Atru.chr9.2515' => 'acertr', 'AUR62004120' => 'cqu', 'AUR62005667' => 'cqu', 'AUR62007634' => 'cqu', 'AUR62008186' => 'cqu', 'AUR62008187' => 'cqu', 'AUR62008188' => 'cqu', 'AUR62027954' => 'cqu', 'AUR62028766' => 'cqu', 'AUR62028767' => 'cqu', 'AUR62028768' => 'cqu', 'AUR62028886' => 'cqu', 'AUR62029563' => 'cqu', 'AUR62038832' => 'cqu', 'BcaB01g04149' => 'bca', 'BcaB03g12940' => 'bca', 'BcaB03g13090' => 'bca', 'BcaB03g14466' => 'bca', 'BcaB05g24035' => 'bca', 'BcaC01g06050' => 'bca', 'BcaC04g19148' => 'bca', 'BcaC04g20761' => 'bca', 'BcaC06g32845' => 'bca', 'BcaC07g41274' => 'bca', 'BcaC09g50827' => 'bca', 'BcaNung00741' => 'bca', 'BcaNung00742' => 'bca', 'BcaNung01859' => 'bca', 'BcaNung03985' => 'bca', 'BcaNung03989' => 'bca', 'BcaNung05661' => 'bca', 'BolC1t00257H' => 'bol', 'BolC1t01956H' => 'bol', 'BolC2t06534H' => 'bol', 'BolC3t14334H' => 'bol', 'BolC5t30451H' => 'bol', 'BolC7t45880H' => 'bol', 'BolC7t46586H' => 'bol', 'BolC8t49301H' => 'bol', 'BolC8t51837H' => 'bol', 'BolC9t56822H' => 'bol', 'BolC9t59235H' => 'bol', 'BraA01t00234Z' => 'bra', 'BraA01t01563Z' => 'bra', 'BraA02t05147Z' => 'bra', 'BraA03t10947Z' => 'bra', 'BraA03t14633Z' => 'bra', 'BraA08t35112Z' => 'bra', 'BraA09t41330Z' => 'bra', 'BraA10t44570Z' => 'bra', 'C01p02670' => 'bna', 'C01p20260' => 'bna', 'C02p05890' => 'bna', 'C03p19530' => 'bna', 'C05p17470' => 'bna', 'C07p53900' => 'bna', 'C07p61630' => 'bna', 'C08p16800' => 'bna', 'C08p42810' => 'bna', 'C09p39480' => 'bna', 'C09p63980' => 'bna', 'CAN.G1001.7' => 'can', 'CAN.G1034.55' => 'can', 'CAN.G143.7' => 'can', 'CAN.G3340.1' => 'can', 'CAN.G358.19' => 'can', 'CAN.G373.2' => 'can', 'CAN.G674.16' => 'can', 'CAN.G674.17' => 'can', 'CAN.G674.18' => 'can', 'CAN.G732.2' => 'can', 'CAN.G732.3' => 'can', 'CAN.G993.39' => 'can', 'CANSAT01G2052' => 'cansat', 'CANSAT80G0070' => 'cansat', 'CANSAT80G0483' => 'cansat', 'CANSAT80G0625' => 'cansat', 'CARHR019690' => 'chi', 'CARHR080280' => 'chi', 'CARHR152750' => 'chi', 'CARHR152760' => 'chi', 'CARHR152770' => 'chi', 'CARHR200340' => 'chi', 'CARHR232370' => 'chi', 'CARHR244670' => 'chi', 'CARHR244680' => 'chi', 'CARHR257520' => 'chi', 'Carub.0001s1872' => 'cru', 'Carub.0006s1130' => 'cru', 'Carub.0007s0396' => 'cru', 'Carub.0007s0397' => 'cru', 'Carub.0007s1608' => 'cru', 'Carub.0008s1068' => 'cru', 'Carub.0008s1077' => 'cru', 'Ca_16158_v3' => 'car', 'Ca_17571_v3' => 'car', 'Ca_21936_v3' => 'car', 'Ca_22350_v3' => 'car', 'CBR_g22445' => 'cbr', 'CBR_g26290' => 'cbr', 'Cc04_g09610' => 'ccan', 'Cc04_g12280' => 'ccan', 'Cc07_g10230' => 'ccan', 'CDE02G0093' => 'cde', 'CDE02G0701' => 'cde', 'CDE04G1050' => 'cde', 'CDE05G1833' => 'cde', 'CDE05G3058' => 'cde', 'CDE05G3380' => 'cde', 'CDE06G0536' => 'cde', 'Cfa006923' => 'cfa', 'Cfa009402' => 'cfa', 'Cfa018751' => 'cfa', 'Cfa019164' => 'cfa', 'Cfa022935' => 'cfa', 'Ciclev10019081m.g' => 'ccl', 'Ciclev10025076m.g' => 'ccl', 'Ciclev10030712m.g' => 'ccl', 'Ciclev10033760m.g' => 'ccl', 'CiPaw.05G105600' => 'cil', 'CiPaw.08G136700' => 'cil', 'CiPaw.11G003900' => 'cil', 'CiPaw.11G023700' => 'cil', 'CiPaw.12G003700' => 'cil', 'ClCG06G017100' => 'cla', 'ClCG06G018110' => 'cla', 'ClCG07G008800' => 'cla', 'ClCG07G015330' => 'cla', 'COL.COLO4_13698' => 'col', 'COL.COLO4_16659' => 'col', 'COL.COLO4_21986' => 'col', 'COL.COLO4_24049' => 'col', 'COL.COLO4_29061' => 'col', 'COL.COLO4_29075' => 'col', 'COL.COLO4_30094' => 'col', 'Cpa.g.c33689' => 'cpa', 'Cpa.g.sc108.39' => 'cpa', 'Cpa.g.sc108.41' => 'cpa', 'Cpa.g.sc1163.1' => 'cpa', 'Cpa.g.sc4.155' => 'cpa', 'Cpa.g.sc6.194' => 'cpa', 'CsaV3_1G000340' => 'csa', 'CsaV3_1G001400' => 'csa', 'CsaV3_4G002220' => 'csa', 'CsaV3_4G005370' => 'csa', 'CSS0007487' => 'camsi', 'CSS0008066' => 'camsi', 'CSS0009120' => 'camsi', 'CSS0015512' => 'camsi', 'CSS0022409' => 'camsi', 'CSS0025358' => 'camsi', 'CSS0044547' => 'camsi', 'DCAR_013057' => 'dca', 'DCAR_015058' => 'dca', 'DCAR_016027' => 'dca', 'DCAR_017327' => 'dca', 'DCAR_020743' => 'dca', 'DCAR_026157' => 'dca', 'DCAR_032339' => 'dca', 'DCAR_032340' => 'dca', 'Dinv11200' => 'din', 'Dinv11201' => 'din', 'Dinv20631' => 'din', 'Dinv23182' => 'din', 'Dinv33466' => 'din', 'Dinv33583' => 'din', 'Dinv38565' => 'din', 'Duzib068G0200' => 'dzi', 'Duzib147G0132' => 'dzi', 'Duzib147G0635' => 'dzi', 'Duzib205G1670' => 'dzi', 'Duzib251G0606' => 'dzi', 'ECA232G3336' => 'eca', 'ECA232G3763' => 'eca', 'ECA232G4845' => 'eca', 'ECA234G1607' => 'eca', 'ECA246G0932' => 'eca', 'ECA247G0781' => 'eca', 'ECA247G1932' => 'eca', 'ECA247G2079' => 'eca', 'ECA247G3338' => 'eca', 'ECA247G4115' => 'eca', 'EL10Ac3g06552' => 'bvu', 'EL10Ac5g10721' => 'bvu', 'EL10Ac5g10722' => 'bvu', 'EL10Ac5g10723' => 'bvu', 'EL10Ac5g11361' => 'bvu', 'EL10Ac6g13553' => 'bvu', 'EL10As8g23872' => 'bvu', 'Eucgr.B00250' => 'egr', 'Eucgr.B00251' => 'egr', 'Eucgr.B03533' => 'egr', 'Eucgr.I02381' => 'egr', 'Eucgr.K02700' => 'egr', 'FAN02G0174' => 'fan', 'FAN02G3146' => 'fan', 'FAN04G1672' => 'fan', 'FAN04G2273' => 'fan', 'FAN05G2791' => 'fan', 'FAN05G4035' => 'fan', 'FAN07G0834' => 'fan', 'FAN08G1198' => 'fan', 'FAN09G4182' => 'fan', 'FAN12G0496' => 'fan', 'FAN13G1027' => 'fan', 'FAN13G2951' => 'fan', 'FAN14G0705' => 'fan', 'FAN14G0720' => 'fan', 'FAN17G0201' => 'fan', 'FAN17G2665' => 'fan', 'FAN18G1456' => 'fan', 'FAN18G1525' => 'fan', 'FAN18G3500' => 'fan', 'FAN28G2670' => 'fan', 'FvH4_1g12391' => 'fve', 'FvH4_4g23220' => 'fve', 'FvH4_5g08810' => 'fve', 'FvH4_5g28960' => 'fve', 'FvH4_6g42820' => 'fve', 'FvH4_6g51110' => 'fve', 'Glyma.02G051802' => 'gma', 'Glyma.04G185300' => 'gma', 'Glyma.05G202900' => 'gma', 'Glyma.08G010300' => 'gma', 'Glyma.16G131900' => 'gma', 'Glyma.17G087900' => 'gma', 'Gohir.A07G048600' => 'ghi', 'Gohir.A11G179000' => 'ghi', 'Gohir.A12G140900' => 'ghi', 'Gohir.A12G140950' => 'ghi', 'Gohir.A12G191700' => 'ghi', 'Gohir.A13G086300' => 'ghi', 'Gohir.D07G052900' => 'ghi', 'Gohir.D11G186600' => 'ghi', 'Gohir.D12G145575' => 'ghi', 'Gohir.D12G145650' => 'ghi', 'Gohir.D12G145725' => 'ghi', 'Gohir.D12G194050' => 'ghi', 'Gohir.D13G091800' => 'ghi', 'Gorai.001G055900' => 'gra', 'Gorai.007G198400' => 'gra', 'Gorai.008G157000' => 'gra', 'Gorai.008G157100' => 'gra', 'Gorai.008G208700' => 'gra', 'Gorai.010G138700' => 'gra', 'GSVIVG01000977001' => 'vvi', 'GSVIVG01007708001' => 'vvi', 'GSVIVG01008587001' => 'vvi', 'GSVIVG01018849001' => 'vvi', 'GSVIVG01032432001' => 'vvi', 'HanXRQChr02g0034131' => 'han', 'HanXRQChr02g0035981' => 'han', 'HanXRQChr02g0035991' => 'han', 'HanXRQChr05g0155611' => 'han', 'HanXRQChr05g0155621' => 'han', 'HanXRQChr08g0236501' => 'han', 'HanXRQChr09g0261321' => 'han', 'HanXRQChr09g0272081' => 'han', 'HanXRQChr10g0310741' => 'han', 'HanXRQChr11g0325591' => 'han', 'HanXRQChr12g0385691' => 'han', 'HanXRQChr13g0387801' => 'han', 'HanXRQChr15g0463011' => 'han', 'Haze_03826' => 'cav', 'Haze_03827' => 'cav', 'Haze_07183' => 'cav', 'Haze_07537' => 'cav', 'Haze_07539' => 'cav', 'Haze_12461' => 'cav', 'Haze_16115' => 'cav', 'Haze_16808' => 'cav', 'Haze_18531' => 'cav', 'Hma1.2p1_0046F.1_g026700' => 'hma', 'Hma1.2p1_0046F.1_g026710' => 'hma', 'Hma1.2p1_0168F.1_g074340' => 'hma', 'Hma1.2p1_0266F.1_g107030' => 'hma', 'Hma1.2p1_0266F.1_g107060' => 'hma', 'Hma1.2p1_0275F.1_g110510' => 'hma', 'Hma1.2p1_0592F.1_g185490' => 'hma', 'Hma1.2p1_0592F.1_g185500' => 'hma', 'Hma1.2p1_0592F.1_g185510' => 'hma', 'Hma1.2p1_0592F.1_g185520' => 'hma', 'Hma1.2p1_0592F.1_g185530' => 'hma', 'Hma1.2p1_0818F.1_g223450' => 'hma', 'HPP92_009708' => 'vpl', 'HPP92_009793' => 'vpl', 'HPP92_009796' => 'vpl', 'HPP92_009797' => 'vpl', 'HPP92_014940' => 'vpl', 'HPP92_014988' => 'vpl', 'Hund02463' => 'sun', 'Hund02760' => 'sun', 'Hund05071' => 'sun', 'Hund10108' => 'sun', 'Hund11204' => 'sun', 'Hund14016' => 'sun', 'Hund16464' => 'sun', 'Lalb_Chr09g0333391' => 'lal', 'Lalb_Chr11g0070461' => 'lal', 'Lalb_Chr12g0201671' => 'lal', 'Lalb_Chr13g0297161' => 'lal', 'Lj1g0002823' => 'lja', 'Lj3C1074T6' => 'lonja', 'Lj4A212T28' => 'lonja', 'Lj4g0005516' => 'lja', 'Lj4g0013705' => 'lja', 'Lj4g0027865' => 'lja', 'Lj5C92G16' => 'lonja', 'Lj5C92T12' => 'lonja', 'Lj7C596T3' => 'lonja', 'Lj9A446G59' => 'lonja', 'Lj9A482G21' => 'lonja', 'Lsat_1_v5_gn_1_28261' => 'lsa', 'Lsat_1_v5_gn_1_28281' => 'lsa', 'Lsat_1_v5_gn_1_32721' => 'lsa', 'Lsat_1_v5_gn_4_151760' => 'lsa', 'Lsat_1_v5_gn_4_2120' => 'lsa', 'Lsat_1_v5_gn_4_75761' => 'lsa', 'Lsat_1_v5_gn_5_10920' => 'lsa', 'Manes.02G099900' => 'mes', 'Manes.11G096200' => 'mes', 'Manes.12G007200' => 'mes', 'Manes.14G048300' => 'mes', 'Manes.17G114700' => 'mes', 'Mapoly0002s0070' => 'mpo', 'Mapoly0029s0099' => 'mpo', 'MBI07_g24742_MAGBIO' => 'mbi', 'MBI10_g27988_MAGBIO' => 'mbi', 'MBI11_g13057_MAGBIO' => 'mbi', 'MD02G1137200' => 'mdo', 'MD06G1137200' => 'mdo', 'MD07G1122300' => 'mdo', 'MD09G1078200' => 'mdo', 'MD13G1123700' => 'mdo', 'MD14G1151900' => 'mdo', 'MD17G1030900' => 'mdo', 'MD17G1068200' => 'mdo', 'MD17G1068600' => 'mdo', 'Medtr3g077540' => 'mtr', 'Medtr4g105530' => 'mtr', 'Medtr8g076580' => 'mtr', 'Medtr8g076590' => 'mtr', 'Medtr8g096410' => 'mtr', 'MELO3C016411.2' => 'cme', 'MELO3C017780.2' => 'cme', 'MELO3C022560.2' => 'cme', 'MELO3C026187.2' => 'cme', 'MELO3C026286.2' => 'cme', 'MELO3C032854.2' => 'cme', 'Migut.H02495' => 'egut', 'Migut.I00561' => 'egut', 'Migut.K01015' => 'egut', 'Migut.K01016' => 'egut', 'Migut.L00743' => 'egut', 'Migut.L00744' => 'egut', 'Migut.L00746' => 'egut', 'Migut.L00798' => 'egut', 'Migut.L00799' => 'egut', 'Migut.N02096' => 'egut', 'MSTRG.11259' => 'ama', 'MSTRG.23142' => 'ama', 'MSTRG.2499' => 'ama', 'Nitab4.5_0000003g0730' => 'nta', 'Nitab4.5_0000137g0020' => 'nta', 'Nitab4.5_0000721g0210' => 'nta', 'Nitab4.5_0000723g0050' => 'nta', 'Nitab4.5_0000913g0070' => 'nta', 'Nitab4.5_0001332g0040' => 'nta', 'Nitab4.5_0001771g0050' => 'nta', 'Nitab4.5_0001918g0050' => 'nta', 'Nitab4.5_0002686g0030' => 'nta', 'Nitab4.5_0003156g0020' => 'nta', 'Nitab4.5_0003383g0040' => 'nta', 'Nitab4.5_0003918g0010' => 'nta', 'Nitab4.5_0006760g0010' => 'nta', 'Nn1g05981' => 'nnu', 'Nn1g06288' => 'nnu', 'Nn3g16371' => 'nnu', 'Nn3g16786' => 'nnu', 'Nn4g22232' => 'nnu', 'Oeu005144.1' => 'oeu', 'Oeu005145.1' => 'oeu', 'Oeu011348.1' => 'oeu', 'Oeu016415.1' => 'oeu', 'Oeu023501.1' => 'oeu', 'Oeu044473.1' => 'oeu', 'Oeu048892.2' => 'oeu', 'Os01g0549200' => 'osa', 'Os02g0469300' => 'osa', 'Os04g0311100' => 'osa', 'Os06g0474900' => 'osa', 'Os10g0181700' => 'osa', 'Os11g0454800' => 'osa', 'Peaxi162Scf00037g00714' => 'pax', 'Peaxi162Scf00084g01217' => 'pax', 'Peaxi162Scf00257g00217' => 'pax', 'Peaxi162Scf00516g00215' => 'pax', 'Peaxi162Scf00689g00123' => 'pax', 'PGR044G2719' => 'pgr', 'PGR083G1360' => 'pgr', 'PGR102G2849' => 'pgr', 'PGR119G2534' => 'pgr', 'PGSC0003DMG400003538' => 'stu', 'PGSC0003DMG400028138' => 'stu', 'PGSC0003DMG400031732' => 'stu', 'PGSC0003DMG400038165' => 'stu', 'Phvul.002G284600' => 'pvu', 'Phvul.003G258200' => 'pvu', 'Phvul.009G176500' => 'pvu', 'Potri.003G167201' => 'ptr', 'Potri.005G118400' => 'ptr', 'Potri.012G089000' => 'ptr', 'Potri.012G102800' => 'ptr', 'Potri.015G079400' => 'ptr', 'Potri.015G100900' => 'ptr', 'Pp3c14_9810' => 'ppa', 'Pp3c15_10450' => 'ppa', 'Pp3c20_19150' => 'ppa', 'Pp3c23_12740' => 'ppa', 'Pp3c23_6310' => 'ppa', 'Pp3c24_3720' => 'ppa', 'Pp3c27_2580' => 'ppa', 'Pp3c9_8990' => 'ppa', 'PRCOL_00002854' => 'pco', 'Prupe.1G221200' => 'ppe', 'Prupe.3G289000' => 'ppe', 'Prupe.5G147000' => 'ppe', 'Prupe.6G157300' => 'ppe', 'Prupe.7G163400' => 'ppe', 'Psat0s2177g0040' => 'psa', 'Psat3g174760' => 'psa', 'Psat3g192160' => 'psa', 'Psat4g058520' => 'psa', 'Psat4g096840' => 'psa', 'Psat7g037320' => 'psa', 'PSO017G1274' => 'pso', 'PSO017G5166' => 'pso', 'PSO063G4558' => 'pso', 'PSO170G4458' => 'pso', 'PSO170G5005' => 'pso', 'PSO210G6156' => 'pso', 'PSO210G6635' => 'pso', 'PSO210G7397' => 'pso', 'PSO210G7700' => 'pso', 'PSO455G0035' => 'pso', 'PSO455G0180' => 'pso', 'PSO478G4515' => 'pso', 'PSO832G1305' => 'pso', 'PSO832G3489' => 'pso', 'QL02p075247' => 'qlo', 'QL03p051148' => 'qlo', 'QL05p010313' => 'qlo', 'QL06p034627' => 'qlo', 'QL10p001889' => 'qlo', 'QL10p010846' => 'qlo', 'RcHm_v2.0_Chr1g0350621' => 'rch', 'RcHm_v2.0_Chr1g0350641' => 'rch', 'RcHm_v2.0_Chr2g0092891' => 'rch', 'RcHm_v2.0_Chr2g0100251' => 'rch', 'RcHm_v2.0_Chr2g0158661' => 'rch', 'RcHm_v2.0_Chr2g0172741' => 'rch', 'RcHm_v2.0_Chr4g0429571' => 'rch', 'RcHm_v2.0_Chr5g0042471' => 'rch', 'RcHm_v2.0_Chr7g0189451' => 'rch', 'Rhsim08G0052000' => 'rsi', 'Rhsim08G0174400' => 'rsi', 'Rhsim08G0193200' => 'rsi', 'Rhsim10G0214800' => 'rsi', 'Rhsim10G0214900' => 'rsi', 'Rhsim10G0215000' => 'rsi', 'Rhsim12G0022900' => 'rsi', 'Rhsim12G0177500' => 'rsi', 'Rhsim12G0177700' => 'rsi', 'Sabra03G0122600' => 'sbr', 'Sabra05G0097400' => 'sbr', 'Sabra12G0064100' => 'sbr', 'Sabra15G0121300' => 'sbr', 'SalBow2G0642' => 'sbo', 'SalBow5G2667' => 'sbo', 'SalBow5G4873' => 'sbo', 'SalBow8G2395' => 'sbo', 'Sc03g0003290' => 'sci', 'Sc10g0010130' => 'sci', 'Sc22g0003650' => 'sci', 'Sed0001603' => 'sed', 'Sed0004259' => 'sed', 'Sed0006789' => 'sed', 'Sed0011838' => 'sed', 'Sed0012964' => 'sed', 'Sed0016383' => 'sed', 'Sed0019010' => 'sed', 'Sed0020188' => 'sed', 'SEGI_04702' => 'sgi', 'SEGI_17231' => 'sgi', 'SEGI_18877' => 'sgi', 'SEGI_25196' => 'sgi', 'SEGI_25515' => 'sgi', 'SEGI_28445' => 'sgi', 'SEGI_37452' => 'sgi', 'SGA_v2.0_scaffold188G40336' => 'sas', 'SGA_v2.0_scaffold228G43247' => 'sas', 'SGA_v2.0_scaffold280G46853' => 'sas', 'SGA_v2.0_scaffold34G13808' => 'sas', 'SGA_v2.0_scaffold40G15576' => 'sas', 'SGA_v2.0_scaffold611G53188' => 'sas', 'SGA_v2.0_scaffold78G25461' => 'sas', 'SGA_v2.0_scaffold90G27888' => 'sas', 'SHI08601' => 'shi', 'SHI08606' => 'shi', 'SHI17117' => 'shi', 'SHI17119' => 'shi', 'SMO118G0201' => 'smo', 'SMO169G0247' => 'smo', 'SMO176G0006' => 'smo', 'SMO176G0015' => 'smo', 'SMO202G0006' => 'smo', 'SMO240G0050' => 'smo', 'SMO286G0009' => 'smo', 'SMO338G0033' => 'smo', 'SMO356G0533' => 'smo', 'SMO364G0382' => 'smo', 'SMO367G0166' => 'smo', 'SMO367G1098' => 'smo', 'Solyc01g009920.3' => 'sly', 'Solyc01g099300.3' => 'sly', 'Solyc02g084700.3' => 'sly', 'Solyc03g097520.3' => 'sly', 'Solyc06g071580.3' => 'sly', 'Solyc10g081760.3' => 'sly', 'Sopen01g005480' => 'spe', 'Sopen01g042850' => 'spe', 'Sopen02g029370' => 'spe', 'Sopen03g028280' => 'spe', 'Sopen06g027870' => 'spe', 'Sopen10g032270' => 'spe', 'Sp5g18180' => 'spa', 'Sp6g12880' => 'spa', 'Sp6g30850' => 'spa', 'Sp7g22960' => 'spa', 'Sp7g34010' => 'spa', 'SpUn1326_0010' => 'spa', 'TAR371G0242' => 'tar', 'TAR622G0638' => 'tar', 'TAR628G1548' => 'tar', 'TAR629G1079' => 'tar', 'TAR629G3413' => 'tar', 'THA.LOC104804249' => 'tha', 'THA.LOC104808315' => 'tha', 'THA.LOC104809238' => 'tha', 'THA.LOC104825484' => 'tha', 'Thecc.01G025500' => 'tca', 'Thecc.03G015800' => 'tca', 'Thecc.03G018000' => 'tca', 'Thecc.03G134800' => 'tca', 'Thecc.04G014700' => 'tca', 'Thhalv10006991m.g' => 'esa', 'Thhalv10012707m.g' => 'esa', 'Thhalv10015739m.g' => 'esa', 'Thhalv10024553m.g' => 'esa', 'Thhalv10024673m.g' => 'esa', 'Thhalv10029187m.g' => 'esa', 'TPR.G12971' => 'tpr', 'TPR.G29396' => 'tpr', 'TPR.G33376' => 'tpr', 'TPR.G35508' => 'tpr', 'TPR.G35516' => 'tpr', 'TPR.G37317' => 'tpr', 'TPR.G37389' => 'tpr', 'TPR.G37523' => 'tpr', 'TPR.G559' => 'tpr', 'TWI14G0070' => 'twi', 'TWI14G0729' => 'twi', 'TWI18G0596' => 'twi', 'TWI39G0780' => 'twi', 'TWI39G0850' => 'twi', 'TWI73G1052' => 'twi', 'unitig_52.g17485' => 'ugi', 'unitig_61.g26355' => 'ugi', 'vmacro01040' => 'vma', 'vmacro16731' => 'vma', 'vmacro18270' => 'vma', 'vmacro19142' => 'vma', 'vmacro19407' => 'vma', 'vmacro19408' => 'vma', 'vmacro21899' => 'vma', 'vmacro21900' => 'vma', 'vmacro21901' => 'vma', 'VMungo0251G0490' => 'vmu', 'VMungo0251G1748' => 'vmu', 'VMungo1309G0421' => 'vmu', 'Zm00001eb086500' => 'zma', 'Zm00001eb150680' => 'zma', 'Zm00001eb162330' => 'zma', 'Zm00001eb203130' => 'zma', 'Zm00001eb369480' => 'zma', 'Zm00001eb382340' => 'zma', 'Zm00001eb416360' => 'zma' ) $gf_id = 'HOM05D000902' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000902' ) $data_identifier = 'HOM05D000902' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 13, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 10, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 6, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 9, 'hma' => (int) 12, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 4, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 6, 'ppa' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 6, 'rch' => (int) 9, 'rsi' => (int) 9, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 12, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 3, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416360' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000902', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '663', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02470' => 'bna', 'A01p16260' => 'bna', 'A02p01680' => 'bna', 'A03p16600' => 'bna', 'A03p55660' => 'bna', 'A03p64160' => 'bna', 'A03p64170' => 'bna', 'A08p31900' => 'bna', 'A09p59530' => 'bna', 'A10p08230' => 'bna', 'A10p25090' => 'bna', 'Aa31LG3G7100' => 'aar', 'Aa31LG3G7110' => 'aar', 'Aa31LG6G13160' => 'aar', 'Aa31LG7G10770' => 'aar', 'Aa31LG7G3830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2723' => 'aag', 'Actinidia08045' => 'ach', 'Actinidia08888' => 'ach', 'Actinidia18333' => 'ach', 'Actinidia19334' => 'ach', 'Actinidia25552' => 'ach', 'Actinidia26089' => 'ach', 'Actinidia30615' => 'ach', 'Actinidia30616' => 'ach', 'Actinidia33083' => 'ach', 'Actinidia35762' => 'ach', 'Ah.02g110620' => 'amhyb', 'Ah.11g046390' => 'amhyb', 'AL1G31670' => 'aly', 'AL6G23730' => 'aly', 'AL7G14740' => 'aly', 'AL7G14750' => 'aly', 'AL7G14760' => 'aly', 'AL7G28220' => 'aly', 'AL8G24940' => 'aly', 'Aqoxy3G01665' => 'aox', 'Aqoxy3G02853' => 'aox', 'Aqoxy5G01513' => 'aox', 'Aqoxy5G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8SKA4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ75LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKDA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0LJZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7REX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZP4YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWX7I5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2QKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS0L9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPCD8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q161UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC7XCF' => 'arhy', 'AT1G19100' => 'ath', 'AT4G24970' => 'ath', 'AT4G36270' => 'ath', 'AT4G36280' => 'ath', 'AT4G36290' => 'ath', 'AT5G13130' => 'ath', 'AT5G50780' => 'ath', 'ATR0582G266' => 'atr', 'ATR0661G195' => 'atr', 'ATR1152G031' => 'atr', 'Atru.chr11.2382' => 'acertr', 'Atru.chr12.2337' => 'acertr', 'Atru.chr3.744' => 'acertr', 'Atru.chr6.1870' => 'acertr', 'Atru.chr9.2515' => 'acertr', 'AUR62004120' => 'cqu', 'AUR62005667' => 'cqu', 'AUR62007634' => 'cqu', 'AUR62008186' => 'cqu', 'AUR62008187' => 'cqu', 'AUR62008188' => 'cqu', 'AUR62027954' => 'cqu', 'AUR62028766' => 'cqu', 'AUR62028767' => 'cqu', 'AUR62028768' => 'cqu', 'AUR62028886' => 'cqu', 'AUR62029563' => 'cqu', 'AUR62038832' => 'cqu', 'BcaB01g04149' => 'bca', 'BcaB03g12940' => 'bca', 'BcaB03g13090' => 'bca', 'BcaB03g14466' => 'bca', 'BcaB05g24035' => 'bca', 'BcaC01g06050' => 'bca', 'BcaC04g19148' => 'bca', 'BcaC04g20761' => 'bca', 'BcaC06g32845' => 'bca', 'BcaC07g41274' => 'bca', 'BcaC09g50827' => 'bca', 'BcaNung00741' => 'bca', 'BcaNung00742' => 'bca', 'BcaNung01859' => 'bca', 'BcaNung03985' => 'bca', 'BcaNung03989' => 'bca', 'BcaNung05661' => 'bca', 'BolC1t00257H' => 'bol', 'BolC1t01956H' => 'bol', 'BolC2t06534H' => 'bol', 'BolC3t14334H' => 'bol', 'BolC5t30451H' => 'bol', 'BolC7t45880H' => 'bol', 'BolC7t46586H' => 'bol', 'BolC8t49301H' => 'bol', 'BolC8t51837H' => 'bol', 'BolC9t56822H' => 'bol', 'BolC9t59235H' => 'bol', 'BraA01t00234Z' => 'bra', 'BraA01t01563Z' => 'bra', 'BraA02t05147Z' => 'bra', 'BraA03t10947Z' => 'bra', 'BraA03t14633Z' => 'bra', 'BraA08t35112Z' => 'bra', 'BraA09t41330Z' => 'bra', 'BraA10t44570Z' => 'bra', 'C01p02670' => 'bna', 'C01p20260' => 'bna', 'C02p05890' => 'bna', 'C03p19530' => 'bna', 'C05p17470' => 'bna', 'C07p53900' => 'bna', 'C07p61630' => 'bna', 'C08p16800' => 'bna', 'C08p42810' => 'bna', 'C09p39480' => 'bna', 'C09p63980' => 'bna', 'CAN.G1001.7' => 'can', 'CAN.G1034.55' => 'can', 'CAN.G143.7' => 'can', 'CAN.G3340.1' => 'can', 'CAN.G358.19' => 'can', 'CAN.G373.2' => 'can', 'CAN.G674.16' => 'can', 'CAN.G674.17' => 'can', 'CAN.G674.18' => 'can', 'CAN.G732.2' => 'can', 'CAN.G732.3' => 'can', 'CAN.G993.39' => 'can', 'CANSAT01G2052' => 'cansat', 'CANSAT80G0070' => 'cansat', 'CANSAT80G0483' => 'cansat', 'CANSAT80G0625' => 'cansat', 'CARHR019690' => 'chi', 'CARHR080280' => 'chi', 'CARHR152750' => 'chi', 'CARHR152760' => 'chi', 'CARHR152770' => 'chi', 'CARHR200340' => 'chi', 'CARHR232370' => 'chi', 'CARHR244670' => 'chi', 'CARHR244680' => 'chi', 'CARHR257520' => 'chi', 'Carub.0001s1872' => 'cru', 'Carub.0006s1130' => 'cru', 'Carub.0007s0396' => 'cru', 'Carub.0007s0397' => 'cru', 'Carub.0007s1608' => 'cru', 'Carub.0008s1068' => 'cru', 'Carub.0008s1077' => 'cru', 'Ca_16158_v3' => 'car', 'Ca_17571_v3' => 'car', 'Ca_21936_v3' => 'car', 'Ca_22350_v3' => 'car', 'CBR_g22445' => 'cbr', 'CBR_g26290' => 'cbr', 'Cc04_g09610' => 'ccan', 'Cc04_g12280' => 'ccan', 'Cc07_g10230' => 'ccan', 'CDE02G0093' => 'cde', 'CDE02G0701' => 'cde', 'CDE04G1050' => 'cde', 'CDE05G1833' => 'cde', 'CDE05G3058' => 'cde', 'CDE05G3380' => 'cde', 'CDE06G0536' => 'cde', 'Cfa006923' => 'cfa', 'Cfa009402' => 'cfa', 'Cfa018751' => 'cfa', 'Cfa019164' => 'cfa', 'Cfa022935' => 'cfa', 'Ciclev10019081m.g' => 'ccl', 'Ciclev10025076m.g' => 'ccl', 'Ciclev10030712m.g' => 'ccl', 'Ciclev10033760m.g' => 'ccl', 'CiPaw.05G105600' => 'cil', 'CiPaw.08G136700' => 'cil', 'CiPaw.11G003900' => 'cil', 'CiPaw.11G023700' => 'cil', 'CiPaw.12G003700' => 'cil', 'ClCG06G017100' => 'cla', 'ClCG06G018110' => 'cla', 'ClCG07G008800' => 'cla', 'ClCG07G015330' => 'cla', 'COL.COLO4_13698' => 'col', 'COL.COLO4_16659' => 'col', 'COL.COLO4_21986' => 'col', 'COL.COLO4_24049' => 'col', 'COL.COLO4_29061' => 'col', 'COL.COLO4_29075' => 'col', 'COL.COLO4_30094' => 'col', 'Cpa.g.c33689' => 'cpa', 'Cpa.g.sc108.39' => 'cpa', 'Cpa.g.sc108.41' => 'cpa', 'Cpa.g.sc1163.1' => 'cpa', 'Cpa.g.sc4.155' => 'cpa', 'Cpa.g.sc6.194' => 'cpa', 'CsaV3_1G000340' => 'csa', 'CsaV3_1G001400' => 'csa', 'CsaV3_4G002220' => 'csa', 'CsaV3_4G005370' => 'csa', 'CSS0007487' => 'camsi', 'CSS0008066' => 'camsi', 'CSS0009120' => 'camsi', 'CSS0015512' => 'camsi', 'CSS0022409' => 'camsi', 'CSS0025358' => 'camsi', 'CSS0044547' => 'camsi', 'DCAR_013057' => 'dca', 'DCAR_015058' => 'dca', 'DCAR_016027' => 'dca', 'DCAR_017327' => 'dca', 'DCAR_020743' => 'dca', 'DCAR_026157' => 'dca', 'DCAR_032339' => 'dca', 'DCAR_032340' => 'dca', 'Dinv11200' => 'din', 'Dinv11201' => 'din', 'Dinv20631' => 'din', 'Dinv23182' => 'din', 'Dinv33466' => 'din', 'Dinv33583' => 'din', 'Dinv38565' => 'din', 'Duzib068G0200' => 'dzi', 'Duzib147G0132' => 'dzi', 'Duzib147G0635' => 'dzi', 'Duzib205G1670' => 'dzi', 'Duzib251G0606' => 'dzi', 'ECA232G3336' => 'eca', 'ECA232G3763' => 'eca', 'ECA232G4845' => 'eca', 'ECA234G1607' => 'eca', 'ECA246G0932' => 'eca', 'ECA247G0781' => 'eca', 'ECA247G1932' => 'eca', 'ECA247G2079' => 'eca', 'ECA247G3338' => 'eca', 'ECA247G4115' => 'eca', 'EL10Ac3g06552' => 'bvu', 'EL10Ac5g10721' => 'bvu', 'EL10Ac5g10722' => 'bvu', 'EL10Ac5g10723' => 'bvu', 'EL10Ac5g11361' => 'bvu', 'EL10Ac6g13553' => 'bvu', 'EL10As8g23872' => 'bvu', 'Eucgr.B00250' => 'egr', 'Eucgr.B00251' => 'egr', 'Eucgr.B03533' => 'egr', 'Eucgr.I02381' => 'egr', 'Eucgr.K02700' => 'egr', 'FAN02G0174' => 'fan', 'FAN02G3146' => 'fan', 'FAN04G1672' => 'fan', 'FAN04G2273' => 'fan', 'FAN05G2791' => 'fan', 'FAN05G4035' => 'fan', 'FAN07G0834' => 'fan', 'FAN08G1198' => 'fan', 'FAN09G4182' => 'fan', 'FAN12G0496' => 'fan', 'FAN13G1027' => 'fan', 'FAN13G2951' => 'fan', 'FAN14G0705' => 'fan', 'FAN14G0720' => 'fan', 'FAN17G0201' => 'fan', 'FAN17G2665' => 'fan', 'FAN18G1456' => 'fan', 'FAN18G1525' => 'fan', 'FAN18G3500' => 'fan', 'FAN28G2670' => 'fan', 'FvH4_1g12391' => 'fve', 'FvH4_4g23220' => 'fve', 'FvH4_5g08810' => 'fve', 'FvH4_5g28960' => 'fve', 'FvH4_6g42820' => 'fve', 'FvH4_6g51110' => 'fve', 'Glyma.02G051802' => 'gma', 'Glyma.04G185300' => 'gma', 'Glyma.05G202900' => 'gma', 'Glyma.08G010300' => 'gma', 'Glyma.16G131900' => 'gma', 'Glyma.17G087900' => 'gma', 'Gohir.A07G048600' => 'ghi', 'Gohir.A11G179000' => 'ghi', 'Gohir.A12G140900' => 'ghi', 'Gohir.A12G140950' => 'ghi', 'Gohir.A12G191700' => 'ghi', 'Gohir.A13G086300' => 'ghi', 'Gohir.D07G052900' => 'ghi', 'Gohir.D11G186600' => 'ghi', 'Gohir.D12G145575' => 'ghi', 'Gohir.D12G145650' => 'ghi', 'Gohir.D12G145725' => 'ghi', 'Gohir.D12G194050' => 'ghi', 'Gohir.D13G091800' => 'ghi', 'Gorai.001G055900' => 'gra', 'Gorai.007G198400' => 'gra', 'Gorai.008G157000' => 'gra', 'Gorai.008G157100' => 'gra', 'Gorai.008G208700' => 'gra', 'Gorai.010G138700' => 'gra', 'GSVIVG01000977001' => 'vvi', 'GSVIVG01007708001' => 'vvi', 'GSVIVG01008587001' => 'vvi', 'GSVIVG01018849001' => 'vvi', 'GSVIVG01032432001' => 'vvi', 'HanXRQChr02g0034131' => 'han', 'HanXRQChr02g0035981' => 'han', 'HanXRQChr02g0035991' => 'han', 'HanXRQChr05g0155611' => 'han', 'HanXRQChr05g0155621' => 'han', 'HanXRQChr08g0236501' => 'han', 'HanXRQChr09g0261321' => 'han', 'HanXRQChr09g0272081' => 'han', 'HanXRQChr10g0310741' => 'han', 'HanXRQChr11g0325591' => 'han', 'HanXRQChr12g0385691' => 'han', 'HanXRQChr13g0387801' => 'han', 'HanXRQChr15g0463011' => 'han', 'Haze_03826' => 'cav', 'Haze_03827' => 'cav', 'Haze_07183' => 'cav', 'Haze_07537' => 'cav', 'Haze_07539' => 'cav', 'Haze_12461' => 'cav', 'Haze_16115' => 'cav', 'Haze_16808' => 'cav', 'Haze_18531' => 'cav', 'Hma1.2p1_0046F.1_g026700' => 'hma', 'Hma1.2p1_0046F.1_g026710' => 'hma', 'Hma1.2p1_0168F.1_g074340' => 'hma', 'Hma1.2p1_0266F.1_g107030' => 'hma', 'Hma1.2p1_0266F.1_g107060' => 'hma', 'Hma1.2p1_0275F.1_g110510' => 'hma', 'Hma1.2p1_0592F.1_g185490' => 'hma', 'Hma1.2p1_0592F.1_g185500' => 'hma', 'Hma1.2p1_0592F.1_g185510' => 'hma', 'Hma1.2p1_0592F.1_g185520' => 'hma', 'Hma1.2p1_0592F.1_g185530' => 'hma', 'Hma1.2p1_0818F.1_g223450' => 'hma', 'HPP92_009708' => 'vpl', 'HPP92_009793' => 'vpl', 'HPP92_009796' => 'vpl', 'HPP92_009797' => 'vpl', 'HPP92_014940' => 'vpl', 'HPP92_014988' => 'vpl', 'Hund02463' => 'sun', 'Hund02760' => 'sun', 'Hund05071' => 'sun', 'Hund10108' => 'sun', 'Hund11204' => 'sun', 'Hund14016' => 'sun', 'Hund16464' => 'sun', 'Lalb_Chr09g0333391' => 'lal', 'Lalb_Chr11g0070461' => 'lal', 'Lalb_Chr12g0201671' => 'lal', 'Lalb_Chr13g0297161' => 'lal', 'Lj1g0002823' => 'lja', 'Lj3C1074T6' => 'lonja', 'Lj4A212T28' => 'lonja', 'Lj4g0005516' => 'lja', 'Lj4g0013705' => 'lja', 'Lj4g0027865' => 'lja', 'Lj5C92G16' => 'lonja', 'Lj5C92T12' => 'lonja', 'Lj7C596T3' => 'lonja', 'Lj9A446G59' => 'lonja', 'Lj9A482G21' => 'lonja', 'Lsat_1_v5_gn_1_28261' => 'lsa', 'Lsat_1_v5_gn_1_28281' => 'lsa', 'Lsat_1_v5_gn_1_32721' => 'lsa', 'Lsat_1_v5_gn_4_151760' => 'lsa', 'Lsat_1_v5_gn_4_2120' => 'lsa', 'Lsat_1_v5_gn_4_75761' => 'lsa', 'Lsat_1_v5_gn_5_10920' => 'lsa', 'Manes.02G099900' => 'mes', 'Manes.11G096200' => 'mes', 'Manes.12G007200' => 'mes', 'Manes.14G048300' => 'mes', 'Manes.17G114700' => 'mes', 'Mapoly0002s0070' => 'mpo', 'Mapoly0029s0099' => 'mpo', 'MBI07_g24742_MAGBIO' => 'mbi', 'MBI10_g27988_MAGBIO' => 'mbi', 'MBI11_g13057_MAGBIO' => 'mbi', 'MD02G1137200' => 'mdo', 'MD06G1137200' => 'mdo', 'MD07G1122300' => 'mdo', 'MD09G1078200' => 'mdo', 'MD13G1123700' => 'mdo', 'MD14G1151900' => 'mdo', 'MD17G1030900' => 'mdo', 'MD17G1068200' => 'mdo', 'MD17G1068600' => 'mdo', 'Medtr3g077540' => 'mtr', 'Medtr4g105530' => 'mtr', 'Medtr8g076580' => 'mtr', 'Medtr8g076590' => 'mtr', 'Medtr8g096410' => 'mtr', 'MELO3C016411.2' => 'cme', 'MELO3C017780.2' => 'cme', 'MELO3C022560.2' => 'cme', 'MELO3C026187.2' => 'cme', 'MELO3C026286.2' => 'cme', 'MELO3C032854.2' => 'cme', 'Migut.H02495' => 'egut', 'Migut.I00561' => 'egut', 'Migut.K01015' => 'egut', 'Migut.K01016' => 'egut', 'Migut.L00743' => 'egut', 'Migut.L00744' => 'egut', 'Migut.L00746' => 'egut', 'Migut.L00798' => 'egut', 'Migut.L00799' => 'egut', 'Migut.N02096' => 'egut', 'MSTRG.11259' => 'ama', 'MSTRG.23142' => 'ama', 'MSTRG.2499' => 'ama', 'Nitab4.5_0000003g0730' => 'nta', 'Nitab4.5_0000137g0020' => 'nta', 'Nitab4.5_0000721g0210' => 'nta', 'Nitab4.5_0000723g0050' => 'nta', 'Nitab4.5_0000913g0070' => 'nta', 'Nitab4.5_0001332g0040' => 'nta', 'Nitab4.5_0001771g0050' => 'nta', 'Nitab4.5_0001918g0050' => 'nta', 'Nitab4.5_0002686g0030' => 'nta', 'Nitab4.5_0003156g0020' => 'nta', 'Nitab4.5_0003383g0040' => 'nta', 'Nitab4.5_0003918g0010' => 'nta', 'Nitab4.5_0006760g0010' => 'nta', 'Nn1g05981' => 'nnu', 'Nn1g06288' => 'nnu', 'Nn3g16371' => 'nnu', 'Nn3g16786' => 'nnu', 'Nn4g22232' => 'nnu', 'Oeu005144.1' => 'oeu', 'Oeu005145.1' => 'oeu', 'Oeu011348.1' => 'oeu', 'Oeu016415.1' => 'oeu', 'Oeu023501.1' => 'oeu', 'Oeu044473.1' => 'oeu', 'Oeu048892.2' => 'oeu', 'Os01g0549200' => 'osa', 'Os02g0469300' => 'osa', 'Os04g0311100' => 'osa', 'Os06g0474900' => 'osa', 'Os10g0181700' => 'osa', 'Os11g0454800' => 'osa', 'Peaxi162Scf00037g00714' => 'pax', 'Peaxi162Scf00084g01217' => 'pax', 'Peaxi162Scf00257g00217' => 'pax', 'Peaxi162Scf00516g00215' => 'pax', 'Peaxi162Scf00689g00123' => 'pax', 'PGR044G2719' => 'pgr', 'PGR083G1360' => 'pgr', 'PGR102G2849' => 'pgr', 'PGR119G2534' => 'pgr', 'PGSC0003DMG400003538' => 'stu', 'PGSC0003DMG400028138' => 'stu', 'PGSC0003DMG400031732' => 'stu', 'PGSC0003DMG400038165' => 'stu', 'Phvul.002G284600' => 'pvu', 'Phvul.003G258200' => 'pvu', 'Phvul.009G176500' => 'pvu', 'Potri.003G167201' => 'ptr', 'Potri.005G118400' => 'ptr', 'Potri.012G089000' => 'ptr', 'Potri.012G102800' => 'ptr', 'Potri.015G079400' => 'ptr', 'Potri.015G100900' => 'ptr', 'Pp3c14_9810' => 'ppa', 'Pp3c15_10450' => 'ppa', 'Pp3c20_19150' => 'ppa', 'Pp3c23_12740' => 'ppa', 'Pp3c23_6310' => 'ppa', 'Pp3c24_3720' => 'ppa', 'Pp3c27_2580' => 'ppa', 'Pp3c9_8990' => 'ppa', 'PRCOL_00002854' => 'pco', 'Prupe.1G221200' => 'ppe', 'Prupe.3G289000' => 'ppe', 'Prupe.5G147000' => 'ppe', 'Prupe.6G157300' => 'ppe', 'Prupe.7G163400' => 'ppe', 'Psat0s2177g0040' => 'psa', 'Psat3g174760' => 'psa', 'Psat3g192160' => 'psa', 'Psat4g058520' => 'psa', 'Psat4g096840' => 'psa', 'Psat7g037320' => 'psa', 'PSO017G1274' => 'pso', 'PSO017G5166' => 'pso', 'PSO063G4558' => 'pso', 'PSO170G4458' => 'pso', 'PSO170G5005' => 'pso', 'PSO210G6156' => 'pso', 'PSO210G6635' => 'pso', 'PSO210G7397' => 'pso', 'PSO210G7700' => 'pso', 'PSO455G0035' => 'pso', 'PSO455G0180' => 'pso', 'PSO478G4515' => 'pso', 'PSO832G1305' => 'pso', 'PSO832G3489' => 'pso', 'QL02p075247' => 'qlo', 'QL03p051148' => 'qlo', 'QL05p010313' => 'qlo', 'QL06p034627' => 'qlo', 'QL10p001889' => 'qlo', 'QL10p010846' => 'qlo', 'RcHm_v2.0_Chr1g0350621' => 'rch', 'RcHm_v2.0_Chr1g0350641' => 'rch', 'RcHm_v2.0_Chr2g0092891' => 'rch', 'RcHm_v2.0_Chr2g0100251' => 'rch', 'RcHm_v2.0_Chr2g0158661' => 'rch', 'RcHm_v2.0_Chr2g0172741' => 'rch', 'RcHm_v2.0_Chr4g0429571' => 'rch', 'RcHm_v2.0_Chr5g0042471' => 'rch', 'RcHm_v2.0_Chr7g0189451' => 'rch', 'Rhsim08G0052000' => 'rsi', 'Rhsim08G0174400' => 'rsi', 'Rhsim08G0193200' => 'rsi', 'Rhsim10G0214800' => 'rsi', 'Rhsim10G0214900' => 'rsi', 'Rhsim10G0215000' => 'rsi', 'Rhsim12G0022900' => 'rsi', 'Rhsim12G0177500' => 'rsi', 'Rhsim12G0177700' => 'rsi', 'Sabra03G0122600' => 'sbr', 'Sabra05G0097400' => 'sbr', 'Sabra12G0064100' => 'sbr', 'Sabra15G0121300' => 'sbr', 'SalBow2G0642' => 'sbo', 'SalBow5G2667' => 'sbo', 'SalBow5G4873' => 'sbo', 'SalBow8G2395' => 'sbo', 'Sc03g0003290' => 'sci', 'Sc10g0010130' => 'sci', 'Sc22g0003650' => 'sci', 'Sed0001603' => 'sed', 'Sed0004259' => 'sed', 'Sed0006789' => 'sed', 'Sed0011838' => 'sed', 'Sed0012964' => 'sed', 'Sed0016383' => 'sed', 'Sed0019010' => 'sed', 'Sed0020188' => 'sed', 'SEGI_04702' => 'sgi', 'SEGI_17231' => 'sgi', 'SEGI_18877' => 'sgi', 'SEGI_25196' => 'sgi', 'SEGI_25515' => 'sgi', 'SEGI_28445' => 'sgi', 'SEGI_37452' => 'sgi', 'SGA_v2.0_scaffold188G40336' => 'sas', 'SGA_v2.0_scaffold228G43247' => 'sas', 'SGA_v2.0_scaffold280G46853' => 'sas', 'SGA_v2.0_scaffold34G13808' => 'sas', 'SGA_v2.0_scaffold40G15576' => 'sas', 'SGA_v2.0_scaffold611G53188' => 'sas', 'SGA_v2.0_scaffold78G25461' => 'sas', 'SGA_v2.0_scaffold90G27888' => 'sas', 'SHI08601' => 'shi', 'SHI08606' => 'shi', 'SHI17117' => 'shi', 'SHI17119' => 'shi', 'SMO118G0201' => 'smo', 'SMO169G0247' => 'smo', 'SMO176G0006' => 'smo', 'SMO176G0015' => 'smo', 'SMO202G0006' => 'smo', 'SMO240G0050' => 'smo', 'SMO286G0009' => 'smo', 'SMO338G0033' => 'smo', 'SMO356G0533' => 'smo', 'SMO364G0382' => 'smo', 'SMO367G0166' => 'smo', 'SMO367G1098' => 'smo', 'Solyc01g009920.3' => 'sly', 'Solyc01g099300.3' => 'sly', 'Solyc02g084700.3' => 'sly', 'Solyc03g097520.3' => 'sly', 'Solyc06g071580.3' => 'sly', 'Solyc10g081760.3' => 'sly', 'Sopen01g005480' => 'spe', 'Sopen01g042850' => 'spe', 'Sopen02g029370' => 'spe', 'Sopen03g028280' => 'spe', 'Sopen06g027870' => 'spe', 'Sopen10g032270' => 'spe', 'Sp5g18180' => 'spa', 'Sp6g12880' => 'spa', 'Sp6g30850' => 'spa', 'Sp7g22960' => 'spa', 'Sp7g34010' => 'spa', 'SpUn1326_0010' => 'spa', 'TAR371G0242' => 'tar', 'TAR622G0638' => 'tar', 'TAR628G1548' => 'tar', 'TAR629G1079' => 'tar', 'TAR629G3413' => 'tar', 'THA.LOC104804249' => 'tha', 'THA.LOC104808315' => 'tha', 'THA.LOC104809238' => 'tha', 'THA.LOC104825484' => 'tha', 'Thecc.01G025500' => 'tca', 'Thecc.03G015800' => 'tca', 'Thecc.03G018000' => 'tca', 'Thecc.03G134800' => 'tca', 'Thecc.04G014700' => 'tca', 'Thhalv10006991m.g' => 'esa', 'Thhalv10012707m.g' => 'esa', 'Thhalv10015739m.g' => 'esa', 'Thhalv10024553m.g' => 'esa', 'Thhalv10024673m.g' => 'esa', 'Thhalv10029187m.g' => 'esa', 'TPR.G12971' => 'tpr', 'TPR.G29396' => 'tpr', 'TPR.G33376' => 'tpr', 'TPR.G35508' => 'tpr', 'TPR.G35516' => 'tpr', 'TPR.G37317' => 'tpr', 'TPR.G37389' => 'tpr', 'TPR.G37523' => 'tpr', 'TPR.G559' => 'tpr', 'TWI14G0070' => 'twi', 'TWI14G0729' => 'twi', 'TWI18G0596' => 'twi', 'TWI39G0780' => 'twi', 'TWI39G0850' => 'twi', 'TWI73G1052' => 'twi', 'unitig_52.g17485' => 'ugi', 'unitig_61.g26355' => 'ugi', 'vmacro01040' => 'vma', 'vmacro16731' => 'vma', 'vmacro18270' => 'vma', 'vmacro19142' => 'vma', 'vmacro19407' => 'vma', 'vmacro19408' => 'vma', 'vmacro21899' => 'vma', 'vmacro21900' => 'vma', 'vmacro21901' => 'vma', 'VMungo0251G0490' => 'vmu', 'VMungo0251G1748' => 'vmu', 'VMungo1309G0421' => 'vmu', 'Zm00001eb086500' => 'zma', 'Zm00001eb150680' => 'zma', 'Zm00001eb162330' => 'zma', 'Zm00001eb203130' => 'zma', 'Zm00001eb369480' => 'zma', 'Zm00001eb382340' => 'zma', 'Zm00001eb416360' => 'zma' ), 'gf_id' => 'HOM05D000902', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000902' ), 'data_identifier' => 'HOM05D000902', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000902', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '663', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02470' => 'bna', 'A01p16260' => 'bna', 'A02p01680' => 'bna', 'A03p16600' => 'bna', 'A03p55660' => 'bna', 'A03p64160' => 'bna', 'A03p64170' => 'bna', 'A08p31900' => 'bna', 'A09p59530' => 'bna', 'A10p08230' => 'bna', 'A10p25090' => 'bna', 'Aa31LG3G7100' => 'aar', 'Aa31LG3G7110' => 'aar', 'Aa31LG6G13160' => 'aar', 'Aa31LG7G10770' => 'aar', 'Aa31LG7G3830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2723' => 'aag', 'Actinidia08045' => 'ach', 'Actinidia08888' => 'ach', 'Actinidia18333' => 'ach', 'Actinidia19334' => 'ach', 'Actinidia25552' => 'ach', 'Actinidia26089' => 'ach', 'Actinidia30615' => 'ach', 'Actinidia30616' => 'ach', 'Actinidia33083' => 'ach', 'Actinidia35762' => 'ach', 'Ah.02g110620' => 'amhyb', 'Ah.11g046390' => 'amhyb', 'AL1G31670' => 'aly', 'AL6G23730' => 'aly', 'AL7G14740' => 'aly', 'AL7G14750' => 'aly', 'AL7G14760' => 'aly', 'AL7G28220' => 'aly', 'AL8G24940' => 'aly', 'Aqoxy3G01665' => 'aox', 'Aqoxy3G02853' => 'aox', 'Aqoxy5G01513' => 'aox', 'Aqoxy5G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8SKA4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ75LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKDA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0LJZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7REX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZP4YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWX7I5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2QKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS0L9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPCD8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q161UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC7XCF' => 'arhy', 'AT1G19100' => 'ath', 'AT4G24970' => 'ath', 'AT4G36270' => 'ath', 'AT4G36280' => 'ath', 'AT4G36290' => 'ath', 'AT5G13130' => 'ath', 'AT5G50780' => 'ath', 'ATR0582G266' => 'atr', 'ATR0661G195' => 'atr', 'ATR1152G031' => 'atr', 'Atru.chr11.2382' => 'acertr', 'Atru.chr12.2337' => 'acertr', 'Atru.chr3.744' => 'acertr', 'Atru.chr6.1870' => 'acertr', 'Atru.chr9.2515' => 'acertr', 'AUR62004120' => 'cqu', 'AUR62005667' => 'cqu', 'AUR62007634' => 'cqu', 'AUR62008186' => 'cqu', 'AUR62008187' => 'cqu', 'AUR62008188' => 'cqu', 'AUR62027954' => 'cqu', 'AUR62028766' => 'cqu', 'AUR62028767' => 'cqu', 'AUR62028768' => 'cqu', 'AUR62028886' => 'cqu', 'AUR62029563' => 'cqu', 'AUR62038832' => 'cqu', 'BcaB01g04149' => 'bca', 'BcaB03g12940' => 'bca', 'BcaB03g13090' => 'bca', 'BcaB03g14466' => 'bca', 'BcaB05g24035' => 'bca', 'BcaC01g06050' => 'bca', 'BcaC04g19148' => 'bca', 'BcaC04g20761' => 'bca', 'BcaC06g32845' => 'bca', 'BcaC07g41274' => 'bca', 'BcaC09g50827' => 'bca', 'BcaNung00741' => 'bca', 'BcaNung00742' => 'bca', 'BcaNung01859' => 'bca', 'BcaNung03985' => 'bca', 'BcaNung03989' => 'bca', 'BcaNung05661' => 'bca', 'BolC1t00257H' => 'bol', 'BolC1t01956H' => 'bol', 'BolC2t06534H' => 'bol', 'BolC3t14334H' => 'bol', 'BolC5t30451H' => 'bol', 'BolC7t45880H' => 'bol', 'BolC7t46586H' => 'bol', 'BolC8t49301H' => 'bol', 'BolC8t51837H' => 'bol', 'BolC9t56822H' => 'bol', 'BolC9t59235H' => 'bol', 'BraA01t00234Z' => 'bra', 'BraA01t01563Z' => 'bra', 'BraA02t05147Z' => 'bra', 'BraA03t10947Z' => 'bra', 'BraA03t14633Z' => 'bra', 'BraA08t35112Z' => 'bra', 'BraA09t41330Z' => 'bra', 'BraA10t44570Z' => 'bra', 'C01p02670' => 'bna', 'C01p20260' => 'bna', 'C02p05890' => 'bna', 'C03p19530' => 'bna', 'C05p17470' => 'bna', 'C07p53900' => 'bna', 'C07p61630' => 'bna', 'C08p16800' => 'bna', 'C08p42810' => 'bna', 'C09p39480' => 'bna', 'C09p63980' => 'bna', 'CAN.G1001.7' => 'can', 'CAN.G1034.55' => 'can', 'CAN.G143.7' => 'can', 'CAN.G3340.1' => 'can', 'CAN.G358.19' => 'can', 'CAN.G373.2' => 'can', 'CAN.G674.16' => 'can', 'CAN.G674.17' => 'can', 'CAN.G674.18' => 'can', 'CAN.G732.2' => 'can', 'CAN.G732.3' => 'can', 'CAN.G993.39' => 'can', 'CANSAT01G2052' => 'cansat', 'CANSAT80G0070' => 'cansat', 'CANSAT80G0483' => 'cansat', 'CANSAT80G0625' => 'cansat', 'CARHR019690' => 'chi', 'CARHR080280' => 'chi', 'CARHR152750' => 'chi', 'CARHR152760' => 'chi', 'CARHR152770' => 'chi', 'CARHR200340' => 'chi', 'CARHR232370' => 'chi', 'CARHR244670' => 'chi', 'CARHR244680' => 'chi', 'CARHR257520' => 'chi', 'Carub.0001s1872' => 'cru', 'Carub.0006s1130' => 'cru', 'Carub.0007s0396' => 'cru', 'Carub.0007s0397' => 'cru', 'Carub.0007s1608' => 'cru', 'Carub.0008s1068' => 'cru', 'Carub.0008s1077' => 'cru', 'Ca_16158_v3' => 'car', 'Ca_17571_v3' => 'car', 'Ca_21936_v3' => 'car', 'Ca_22350_v3' => 'car', 'CBR_g22445' => 'cbr', 'CBR_g26290' => 'cbr', 'Cc04_g09610' => 'ccan', 'Cc04_g12280' => 'ccan', 'Cc07_g10230' => 'ccan', 'CDE02G0093' => 'cde', 'CDE02G0701' => 'cde', 'CDE04G1050' => 'cde', 'CDE05G1833' => 'cde', 'CDE05G3058' => 'cde', 'CDE05G3380' => 'cde', 'CDE06G0536' => 'cde', 'Cfa006923' => 'cfa', 'Cfa009402' => 'cfa', 'Cfa018751' => 'cfa', 'Cfa019164' => 'cfa', 'Cfa022935' => 'cfa', 'Ciclev10019081m.g' => 'ccl', 'Ciclev10025076m.g' => 'ccl', 'Ciclev10030712m.g' => 'ccl', 'Ciclev10033760m.g' => 'ccl', 'CiPaw.05G105600' => 'cil', 'CiPaw.08G136700' => 'cil', 'CiPaw.11G003900' => 'cil', 'CiPaw.11G023700' => 'cil', 'CiPaw.12G003700' => 'cil', 'ClCG06G017100' => 'cla', 'ClCG06G018110' => 'cla', 'ClCG07G008800' => 'cla', 'ClCG07G015330' => 'cla', 'COL.COLO4_13698' => 'col', 'COL.COLO4_16659' => 'col', 'COL.COLO4_21986' => 'col', 'COL.COLO4_24049' => 'col', 'COL.COLO4_29061' => 'col', 'COL.COLO4_29075' => 'col', 'COL.COLO4_30094' => 'col', 'Cpa.g.c33689' => 'cpa', 'Cpa.g.sc108.39' => 'cpa', 'Cpa.g.sc108.41' => 'cpa', 'Cpa.g.sc1163.1' => 'cpa', 'Cpa.g.sc4.155' => 'cpa', 'Cpa.g.sc6.194' => 'cpa', 'CsaV3_1G000340' => 'csa', 'CsaV3_1G001400' => 'csa', 'CsaV3_4G002220' => 'csa', 'CsaV3_4G005370' => 'csa', 'CSS0007487' => 'camsi', 'CSS0008066' => 'camsi', 'CSS0009120' => 'camsi', 'CSS0015512' => 'camsi', 'CSS0022409' => 'camsi', 'CSS0025358' => 'camsi', 'CSS0044547' => 'camsi', 'DCAR_013057' => 'dca', 'DCAR_015058' => 'dca', 'DCAR_016027' => 'dca', 'DCAR_017327' => 'dca', 'DCAR_020743' => 'dca', 'DCAR_026157' => 'dca', 'DCAR_032339' => 'dca', 'DCAR_032340' => 'dca', 'Dinv11200' => 'din', 'Dinv11201' => 'din', 'Dinv20631' => 'din', 'Dinv23182' => 'din', 'Dinv33466' => 'din', 'Dinv33583' => 'din', 'Dinv38565' => 'din', 'Duzib068G0200' => 'dzi', 'Duzib147G0132' => 'dzi', 'Duzib147G0635' => 'dzi', 'Duzib205G1670' => 'dzi', 'Duzib251G0606' => 'dzi', 'ECA232G3336' => 'eca', 'ECA232G3763' => 'eca', 'ECA232G4845' => 'eca', 'ECA234G1607' => 'eca', 'ECA246G0932' => 'eca', 'ECA247G0781' => 'eca', 'ECA247G1932' => 'eca', 'ECA247G2079' => 'eca', 'ECA247G3338' => 'eca', 'ECA247G4115' => 'eca', 'EL10Ac3g06552' => 'bvu', 'EL10Ac5g10721' => 'bvu', 'EL10Ac5g10722' => 'bvu', 'EL10Ac5g10723' => 'bvu', 'EL10Ac5g11361' => 'bvu', 'EL10Ac6g13553' => 'bvu', 'EL10As8g23872' => 'bvu', 'Eucgr.B00250' => 'egr', 'Eucgr.B00251' => 'egr', 'Eucgr.B03533' => 'egr', 'Eucgr.I02381' => 'egr', 'Eucgr.K02700' => 'egr', 'FAN02G0174' => 'fan', 'FAN02G3146' => 'fan', 'FAN04G1672' => 'fan', 'FAN04G2273' => 'fan', 'FAN05G2791' => 'fan', 'FAN05G4035' => 'fan', 'FAN07G0834' => 'fan', 'FAN08G1198' => 'fan', 'FAN09G4182' => 'fan', 'FAN12G0496' => 'fan', 'FAN13G1027' => 'fan', 'FAN13G2951' => 'fan', 'FAN14G0705' => 'fan', 'FAN14G0720' => 'fan', 'FAN17G0201' => 'fan', 'FAN17G2665' => 'fan', 'FAN18G1456' => 'fan', 'FAN18G1525' => 'fan', 'FAN18G3500' => 'fan', 'FAN28G2670' => 'fan', 'FvH4_1g12391' => 'fve', 'FvH4_4g23220' => 'fve', 'FvH4_5g08810' => 'fve', 'FvH4_5g28960' => 'fve', 'FvH4_6g42820' => 'fve', 'FvH4_6g51110' => 'fve', 'Glyma.02G051802' => 'gma', 'Glyma.04G185300' => 'gma', 'Glyma.05G202900' => 'gma', 'Glyma.08G010300' => 'gma', 'Glyma.16G131900' => 'gma', 'Glyma.17G087900' => 'gma', 'Gohir.A07G048600' => 'ghi', 'Gohir.A11G179000' => 'ghi', 'Gohir.A12G140900' => 'ghi', 'Gohir.A12G140950' => 'ghi', 'Gohir.A12G191700' => 'ghi', 'Gohir.A13G086300' => 'ghi', 'Gohir.D07G052900' => 'ghi', 'Gohir.D11G186600' => 'ghi', 'Gohir.D12G145575' => 'ghi', 'Gohir.D12G145650' => 'ghi', 'Gohir.D12G145725' => 'ghi', 'Gohir.D12G194050' => 'ghi', 'Gohir.D13G091800' => 'ghi', 'Gorai.001G055900' => 'gra', 'Gorai.007G198400' => 'gra', 'Gorai.008G157000' => 'gra', 'Gorai.008G157100' => 'gra', 'Gorai.008G208700' => 'gra', 'Gorai.010G138700' => 'gra', 'GSVIVG01000977001' => 'vvi', 'GSVIVG01007708001' => 'vvi', 'GSVIVG01008587001' => 'vvi', 'GSVIVG01018849001' => 'vvi', 'GSVIVG01032432001' => 'vvi', 'HanXRQChr02g0034131' => 'han', 'HanXRQChr02g0035981' => 'han', 'HanXRQChr02g0035991' => 'han', 'HanXRQChr05g0155611' => 'han', 'HanXRQChr05g0155621' => 'han', 'HanXRQChr08g0236501' => 'han', 'HanXRQChr09g0261321' => 'han', 'HanXRQChr09g0272081' => 'han', 'HanXRQChr10g0310741' => 'han', 'HanXRQChr11g0325591' => 'han', 'HanXRQChr12g0385691' => 'han', 'HanXRQChr13g0387801' => 'han', 'HanXRQChr15g0463011' => 'han', 'Haze_03826' => 'cav', 'Haze_03827' => 'cav', 'Haze_07183' => 'cav', 'Haze_07537' => 'cav', 'Haze_07539' => 'cav', 'Haze_12461' => 'cav', 'Haze_16115' => 'cav', 'Haze_16808' => 'cav', 'Haze_18531' => 'cav', 'Hma1.2p1_0046F.1_g026700' => 'hma', 'Hma1.2p1_0046F.1_g026710' => 'hma', 'Hma1.2p1_0168F.1_g074340' => 'hma', 'Hma1.2p1_0266F.1_g107030' => 'hma', 'Hma1.2p1_0266F.1_g107060' => 'hma', 'Hma1.2p1_0275F.1_g110510' => 'hma', 'Hma1.2p1_0592F.1_g185490' => 'hma', 'Hma1.2p1_0592F.1_g185500' => 'hma', 'Hma1.2p1_0592F.1_g185510' => 'hma', 'Hma1.2p1_0592F.1_g185520' => 'hma', 'Hma1.2p1_0592F.1_g185530' => 'hma', 'Hma1.2p1_0818F.1_g223450' => 'hma', 'HPP92_009708' => 'vpl', 'HPP92_009793' => 'vpl', 'HPP92_009796' => 'vpl', 'HPP92_009797' => 'vpl', 'HPP92_014940' => 'vpl', 'HPP92_014988' => 'vpl', 'Hund02463' => 'sun', 'Hund02760' => 'sun', 'Hund05071' => 'sun', 'Hund10108' => 'sun', 'Hund11204' => 'sun', 'Hund14016' => 'sun', 'Hund16464' => 'sun', 'Lalb_Chr09g0333391' => 'lal', 'Lalb_Chr11g0070461' => 'lal', 'Lalb_Chr12g0201671' => 'lal', 'Lalb_Chr13g0297161' => 'lal', 'Lj1g0002823' => 'lja', 'Lj3C1074T6' => 'lonja', 'Lj4A212T28' => 'lonja', 'Lj4g0005516' => 'lja', 'Lj4g0013705' => 'lja', 'Lj4g0027865' => 'lja', 'Lj5C92G16' => 'lonja', 'Lj5C92T12' => 'lonja', 'Lj7C596T3' => 'lonja', 'Lj9A446G59' => 'lonja', 'Lj9A482G21' => 'lonja', 'Lsat_1_v5_gn_1_28261' => 'lsa', 'Lsat_1_v5_gn_1_28281' => 'lsa', 'Lsat_1_v5_gn_1_32721' => 'lsa', 'Lsat_1_v5_gn_4_151760' => 'lsa', 'Lsat_1_v5_gn_4_2120' => 'lsa', 'Lsat_1_v5_gn_4_75761' => 'lsa', 'Lsat_1_v5_gn_5_10920' => 'lsa', 'Manes.02G099900' => 'mes', 'Manes.11G096200' => 'mes', 'Manes.12G007200' => 'mes', 'Manes.14G048300' => 'mes', 'Manes.17G114700' => 'mes', 'Mapoly0002s0070' => 'mpo', 'Mapoly0029s0099' => 'mpo', 'MBI07_g24742_MAGBIO' => 'mbi', 'MBI10_g27988_MAGBIO' => 'mbi', 'MBI11_g13057_MAGBIO' => 'mbi', 'MD02G1137200' => 'mdo', 'MD06G1137200' => 'mdo', 'MD07G1122300' => 'mdo', 'MD09G1078200' => 'mdo', 'MD13G1123700' => 'mdo', 'MD14G1151900' => 'mdo', 'MD17G1030900' => 'mdo', 'MD17G1068200' => 'mdo', 'MD17G1068600' => 'mdo', 'Medtr3g077540' => 'mtr', 'Medtr4g105530' => 'mtr', 'Medtr8g076580' => 'mtr', 'Medtr8g076590' => 'mtr', 'Medtr8g096410' => 'mtr', 'MELO3C016411.2' => 'cme', 'MELO3C017780.2' => 'cme', 'MELO3C022560.2' => 'cme', 'MELO3C026187.2' => 'cme', 'MELO3C026286.2' => 'cme', 'MELO3C032854.2' => 'cme', 'Migut.H02495' => 'egut', 'Migut.I00561' => 'egut', 'Migut.K01015' => 'egut', 'Migut.K01016' => 'egut', 'Migut.L00743' => 'egut', 'Migut.L00744' => 'egut', 'Migut.L00746' => 'egut', 'Migut.L00798' => 'egut', 'Migut.L00799' => 'egut', 'Migut.N02096' => 'egut', 'MSTRG.11259' => 'ama', 'MSTRG.23142' => 'ama', 'MSTRG.2499' => 'ama', 'Nitab4.5_0000003g0730' => 'nta', 'Nitab4.5_0000137g0020' => 'nta', 'Nitab4.5_0000721g0210' => 'nta', 'Nitab4.5_0000723g0050' => 'nta', 'Nitab4.5_0000913g0070' => 'nta', 'Nitab4.5_0001332g0040' => 'nta', 'Nitab4.5_0001771g0050' => 'nta', 'Nitab4.5_0001918g0050' => 'nta', 'Nitab4.5_0002686g0030' => 'nta', 'Nitab4.5_0003156g0020' => 'nta', 'Nitab4.5_0003383g0040' => 'nta', 'Nitab4.5_0003918g0010' => 'nta', 'Nitab4.5_0006760g0010' => 'nta', 'Nn1g05981' => 'nnu', 'Nn1g06288' => 'nnu', 'Nn3g16371' => 'nnu', 'Nn3g16786' => 'nnu', 'Nn4g22232' => 'nnu', 'Oeu005144.1' => 'oeu', 'Oeu005145.1' => 'oeu', 'Oeu011348.1' => 'oeu', 'Oeu016415.1' => 'oeu', 'Oeu023501.1' => 'oeu', 'Oeu044473.1' => 'oeu', 'Oeu048892.2' => 'oeu', 'Os01g0549200' => 'osa', 'Os02g0469300' => 'osa', 'Os04g0311100' => 'osa', 'Os06g0474900' => 'osa', 'Os10g0181700' => 'osa', 'Os11g0454800' => 'osa', 'Peaxi162Scf00037g00714' => 'pax', 'Peaxi162Scf00084g01217' => 'pax', 'Peaxi162Scf00257g00217' => 'pax', 'Peaxi162Scf00516g00215' => 'pax', 'Peaxi162Scf00689g00123' => 'pax', 'PGR044G2719' => 'pgr', 'PGR083G1360' => 'pgr', 'PGR102G2849' => 'pgr', 'PGR119G2534' => 'pgr', 'PGSC0003DMG400003538' => 'stu', 'PGSC0003DMG400028138' => 'stu', 'PGSC0003DMG400031732' => 'stu', 'PGSC0003DMG400038165' => 'stu', 'Phvul.002G284600' => 'pvu', 'Phvul.003G258200' => 'pvu', 'Phvul.009G176500' => 'pvu', 'Potri.003G167201' => 'ptr', 'Potri.005G118400' => 'ptr', 'Potri.012G089000' => 'ptr', 'Potri.012G102800' => 'ptr', 'Potri.015G079400' => 'ptr', 'Potri.015G100900' => 'ptr', 'Pp3c14_9810' => 'ppa', 'Pp3c15_10450' => 'ppa', 'Pp3c20_19150' => 'ppa', 'Pp3c23_12740' => 'ppa', 'Pp3c23_6310' => 'ppa', 'Pp3c24_3720' => 'ppa', 'Pp3c27_2580' => 'ppa', 'Pp3c9_8990' => 'ppa', 'PRCOL_00002854' => 'pco', 'Prupe.1G221200' => 'ppe', 'Prupe.3G289000' => 'ppe', 'Prupe.5G147000' => 'ppe', 'Prupe.6G157300' => 'ppe', 'Prupe.7G163400' => 'ppe', 'Psat0s2177g0040' => 'psa', 'Psat3g174760' => 'psa', 'Psat3g192160' => 'psa', 'Psat4g058520' => 'psa', 'Psat4g096840' => 'psa', 'Psat7g037320' => 'psa', 'PSO017G1274' => 'pso', 'PSO017G5166' => 'pso', 'PSO063G4558' => 'pso', 'PSO170G4458' => 'pso', 'PSO170G5005' => 'pso', 'PSO210G6156' => 'pso', 'PSO210G6635' => 'pso', 'PSO210G7397' => 'pso', 'PSO210G7700' => 'pso', 'PSO455G0035' => 'pso', 'PSO455G0180' => 'pso', 'PSO478G4515' => 'pso', 'PSO832G1305' => 'pso', 'PSO832G3489' => 'pso', 'QL02p075247' => 'qlo', 'QL03p051148' => 'qlo', 'QL05p010313' => 'qlo', 'QL06p034627' => 'qlo', 'QL10p001889' => 'qlo', 'QL10p010846' => 'qlo', 'RcHm_v2.0_Chr1g0350621' => 'rch', 'RcHm_v2.0_Chr1g0350641' => 'rch', 'RcHm_v2.0_Chr2g0092891' => 'rch', 'RcHm_v2.0_Chr2g0100251' => 'rch', 'RcHm_v2.0_Chr2g0158661' => 'rch', 'RcHm_v2.0_Chr2g0172741' => 'rch', 'RcHm_v2.0_Chr4g0429571' => 'rch', 'RcHm_v2.0_Chr5g0042471' => 'rch', 'RcHm_v2.0_Chr7g0189451' => 'rch', 'Rhsim08G0052000' => 'rsi', 'Rhsim08G0174400' => 'rsi', 'Rhsim08G0193200' => 'rsi', 'Rhsim10G0214800' => 'rsi', 'Rhsim10G0214900' => 'rsi', 'Rhsim10G0215000' => 'rsi', 'Rhsim12G0022900' => 'rsi', 'Rhsim12G0177500' => 'rsi', 'Rhsim12G0177700' => 'rsi', 'Sabra03G0122600' => 'sbr', 'Sabra05G0097400' => 'sbr', 'Sabra12G0064100' => 'sbr', 'Sabra15G0121300' => 'sbr', 'SalBow2G0642' => 'sbo', 'SalBow5G2667' => 'sbo', 'SalBow5G4873' => 'sbo', 'SalBow8G2395' => 'sbo', 'Sc03g0003290' => 'sci', 'Sc10g0010130' => 'sci', 'Sc22g0003650' => 'sci', 'Sed0001603' => 'sed', 'Sed0004259' => 'sed', 'Sed0006789' => 'sed', 'Sed0011838' => 'sed', 'Sed0012964' => 'sed', 'Sed0016383' => 'sed', 'Sed0019010' => 'sed', 'Sed0020188' => 'sed', 'SEGI_04702' => 'sgi', 'SEGI_17231' => 'sgi', 'SEGI_18877' => 'sgi', 'SEGI_25196' => 'sgi', 'SEGI_25515' => 'sgi', 'SEGI_28445' => 'sgi', 'SEGI_37452' => 'sgi', 'SGA_v2.0_scaffold188G40336' => 'sas', 'SGA_v2.0_scaffold228G43247' => 'sas', 'SGA_v2.0_scaffold280G46853' => 'sas', 'SGA_v2.0_scaffold34G13808' => 'sas', 'SGA_v2.0_scaffold40G15576' => 'sas', 'SGA_v2.0_scaffold611G53188' => 'sas', 'SGA_v2.0_scaffold78G25461' => 'sas', 'SGA_v2.0_scaffold90G27888' => 'sas', 'SHI08601' => 'shi', 'SHI08606' => 'shi', 'SHI17117' => 'shi', 'SHI17119' => 'shi', 'SMO118G0201' => 'smo', 'SMO169G0247' => 'smo', 'SMO176G0006' => 'smo', 'SMO176G0015' => 'smo', 'SMO202G0006' => 'smo', 'SMO240G0050' => 'smo', 'SMO286G0009' => 'smo', 'SMO338G0033' => 'smo', 'SMO356G0533' => 'smo', 'SMO364G0382' => 'smo', 'SMO367G0166' => 'smo', 'SMO367G1098' => 'smo', 'Solyc01g009920.3' => 'sly', 'Solyc01g099300.3' => 'sly', 'Solyc02g084700.3' => 'sly', 'Solyc03g097520.3' => 'sly', 'Solyc06g071580.3' => 'sly', 'Solyc10g081760.3' => 'sly', 'Sopen01g005480' => 'spe', 'Sopen01g042850' => 'spe', 'Sopen02g029370' => 'spe', 'Sopen03g028280' => 'spe', 'Sopen06g027870' => 'spe', 'Sopen10g032270' => 'spe', 'Sp5g18180' => 'spa', 'Sp6g12880' => 'spa', 'Sp6g30850' => 'spa', 'Sp7g22960' => 'spa', 'Sp7g34010' => 'spa', 'SpUn1326_0010' => 'spa', 'TAR371G0242' => 'tar', 'TAR622G0638' => 'tar', 'TAR628G1548' => 'tar', 'TAR629G1079' => 'tar', 'TAR629G3413' => 'tar', 'THA.LOC104804249' => 'tha', 'THA.LOC104808315' => 'tha', 'THA.LOC104809238' => 'tha', 'THA.LOC104825484' => 'tha', 'Thecc.01G025500' => 'tca', 'Thecc.03G015800' => 'tca', 'Thecc.03G018000' => 'tca', 'Thecc.03G134800' => 'tca', 'Thecc.04G014700' => 'tca', 'Thhalv10006991m.g' => 'esa', 'Thhalv10012707m.g' => 'esa', 'Thhalv10015739m.g' => 'esa', 'Thhalv10024553m.g' => 'esa', 'Thhalv10024673m.g' => 'esa', 'Thhalv10029187m.g' => 'esa', 'TPR.G12971' => 'tpr', 'TPR.G29396' => 'tpr', 'TPR.G33376' => 'tpr', 'TPR.G35508' => 'tpr', 'TPR.G35516' => 'tpr', 'TPR.G37317' => 'tpr', 'TPR.G37389' => 'tpr', 'TPR.G37523' => 'tpr', 'TPR.G559' => 'tpr', 'TWI14G0070' => 'twi', 'TWI14G0729' => 'twi', 'TWI18G0596' => 'twi', 'TWI39G0780' => 'twi', 'TWI39G0850' => 'twi', 'TWI73G1052' => 'twi', 'unitig_52.g17485' => 'ugi', 'unitig_61.g26355' => 'ugi', 'vmacro01040' => 'vma', 'vmacro16731' => 'vma', 'vmacro18270' => 'vma', 'vmacro19142' => 'vma', 'vmacro19407' => 'vma', 'vmacro19408' => 'vma', 'vmacro21899' => 'vma', 'vmacro21900' => 'vma', 'vmacro21901' => 'vma', 'VMungo0251G0490' => 'vmu', 'VMungo0251G1748' => 'vmu', 'VMungo1309G0421' => 'vmu', 'Zm00001eb086500' => 'zma', 'Zm00001eb150680' => 'zma', 'Zm00001eb162330' => 'zma', 'Zm00001eb203130' => 'zma', 'Zm00001eb369480' => 'zma', 'Zm00001eb382340' => 'zma', 'Zm00001eb416360' => 'zma' ) $gf_id = 'HOM05D000902' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000902' ) $data_identifier = 'HOM05D000902' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 13, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 10, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 6, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 9, 'hma' => (int) 12, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 4, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 6, 'ppa' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 6, 'rch' => (int) 9, 'rsi' => (int) 9, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 12, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 3, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416360' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000902', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '663', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02470' => 'bna', 'A01p16260' => 'bna', 'A02p01680' => 'bna', 'A03p16600' => 'bna', 'A03p55660' => 'bna', 'A03p64160' => 'bna', 'A03p64170' => 'bna', 'A08p31900' => 'bna', 'A09p59530' => 'bna', 'A10p08230' => 'bna', 'A10p25090' => 'bna', 'Aa31LG3G7100' => 'aar', 'Aa31LG3G7110' => 'aar', 'Aa31LG6G13160' => 'aar', 'Aa31LG7G10770' => 'aar', 'Aa31LG7G3830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2723' => 'aag', 'Actinidia08045' => 'ach', 'Actinidia08888' => 'ach', 'Actinidia18333' => 'ach', 'Actinidia19334' => 'ach', 'Actinidia25552' => 'ach', 'Actinidia26089' => 'ach', 'Actinidia30615' => 'ach', 'Actinidia30616' => 'ach', 'Actinidia33083' => 'ach', 'Actinidia35762' => 'ach', 'Ah.02g110620' => 'amhyb', 'Ah.11g046390' => 'amhyb', 'AL1G31670' => 'aly', 'AL6G23730' => 'aly', 'AL7G14740' => 'aly', 'AL7G14750' => 'aly', 'AL7G14760' => 'aly', 'AL7G28220' => 'aly', 'AL8G24940' => 'aly', 'Aqoxy3G01665' => 'aox', 'Aqoxy3G02853' => 'aox', 'Aqoxy5G01513' => 'aox', 'Aqoxy5G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8SKA4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ75LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKDA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0LJZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7REX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZP4YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWX7I5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2QKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS0L9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPCD8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q161UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC7XCF' => 'arhy', 'AT1G19100' => 'ath', 'AT4G24970' => 'ath', 'AT4G36270' => 'ath', 'AT4G36280' => 'ath', 'AT4G36290' => 'ath', 'AT5G13130' => 'ath', 'AT5G50780' => 'ath', 'ATR0582G266' => 'atr', 'ATR0661G195' => 'atr', 'ATR1152G031' => 'atr', 'Atru.chr11.2382' => 'acertr', 'Atru.chr12.2337' => 'acertr', 'Atru.chr3.744' => 'acertr', 'Atru.chr6.1870' => 'acertr', 'Atru.chr9.2515' => 'acertr', 'AUR62004120' => 'cqu', 'AUR62005667' => 'cqu', 'AUR62007634' => 'cqu', 'AUR62008186' => 'cqu', 'AUR62008187' => 'cqu', 'AUR62008188' => 'cqu', 'AUR62027954' => 'cqu', 'AUR62028766' => 'cqu', 'AUR62028767' => 'cqu', 'AUR62028768' => 'cqu', 'AUR62028886' => 'cqu', 'AUR62029563' => 'cqu', 'AUR62038832' => 'cqu', 'BcaB01g04149' => 'bca', 'BcaB03g12940' => 'bca', 'BcaB03g13090' => 'bca', 'BcaB03g14466' => 'bca', 'BcaB05g24035' => 'bca', 'BcaC01g06050' => 'bca', 'BcaC04g19148' => 'bca', 'BcaC04g20761' => 'bca', 'BcaC06g32845' => 'bca', 'BcaC07g41274' => 'bca', 'BcaC09g50827' => 'bca', 'BcaNung00741' => 'bca', 'BcaNung00742' => 'bca', 'BcaNung01859' => 'bca', 'BcaNung03985' => 'bca', 'BcaNung03989' => 'bca', 'BcaNung05661' => 'bca', 'BolC1t00257H' => 'bol', 'BolC1t01956H' => 'bol', 'BolC2t06534H' => 'bol', 'BolC3t14334H' => 'bol', 'BolC5t30451H' => 'bol', 'BolC7t45880H' => 'bol', 'BolC7t46586H' => 'bol', 'BolC8t49301H' => 'bol', 'BolC8t51837H' => 'bol', 'BolC9t56822H' => 'bol', 'BolC9t59235H' => 'bol', 'BraA01t00234Z' => 'bra', 'BraA01t01563Z' => 'bra', 'BraA02t05147Z' => 'bra', 'BraA03t10947Z' => 'bra', 'BraA03t14633Z' => 'bra', 'BraA08t35112Z' => 'bra', 'BraA09t41330Z' => 'bra', 'BraA10t44570Z' => 'bra', 'C01p02670' => 'bna', 'C01p20260' => 'bna', 'C02p05890' => 'bna', 'C03p19530' => 'bna', 'C05p17470' => 'bna', 'C07p53900' => 'bna', 'C07p61630' => 'bna', 'C08p16800' => 'bna', 'C08p42810' => 'bna', 'C09p39480' => 'bna', 'C09p63980' => 'bna', 'CAN.G1001.7' => 'can', 'CAN.G1034.55' => 'can', 'CAN.G143.7' => 'can', 'CAN.G3340.1' => 'can', 'CAN.G358.19' => 'can', 'CAN.G373.2' => 'can', 'CAN.G674.16' => 'can', 'CAN.G674.17' => 'can', 'CAN.G674.18' => 'can', 'CAN.G732.2' => 'can', 'CAN.G732.3' => 'can', 'CAN.G993.39' => 'can', 'CANSAT01G2052' => 'cansat', 'CANSAT80G0070' => 'cansat', 'CANSAT80G0483' => 'cansat', 'CANSAT80G0625' => 'cansat', 'CARHR019690' => 'chi', 'CARHR080280' => 'chi', 'CARHR152750' => 'chi', 'CARHR152760' => 'chi', 'CARHR152770' => 'chi', 'CARHR200340' => 'chi', 'CARHR232370' => 'chi', 'CARHR244670' => 'chi', 'CARHR244680' => 'chi', 'CARHR257520' => 'chi', 'Carub.0001s1872' => 'cru', 'Carub.0006s1130' => 'cru', 'Carub.0007s0396' => 'cru', 'Carub.0007s0397' => 'cru', 'Carub.0007s1608' => 'cru', 'Carub.0008s1068' => 'cru', 'Carub.0008s1077' => 'cru', 'Ca_16158_v3' => 'car', 'Ca_17571_v3' => 'car', 'Ca_21936_v3' => 'car', 'Ca_22350_v3' => 'car', 'CBR_g22445' => 'cbr', 'CBR_g26290' => 'cbr', 'Cc04_g09610' => 'ccan', 'Cc04_g12280' => 'ccan', 'Cc07_g10230' => 'ccan', 'CDE02G0093' => 'cde', 'CDE02G0701' => 'cde', 'CDE04G1050' => 'cde', 'CDE05G1833' => 'cde', 'CDE05G3058' => 'cde', 'CDE05G3380' => 'cde', 'CDE06G0536' => 'cde', 'Cfa006923' => 'cfa', 'Cfa009402' => 'cfa', 'Cfa018751' => 'cfa', 'Cfa019164' => 'cfa', 'Cfa022935' => 'cfa', 'Ciclev10019081m.g' => 'ccl', 'Ciclev10025076m.g' => 'ccl', 'Ciclev10030712m.g' => 'ccl', 'Ciclev10033760m.g' => 'ccl', 'CiPaw.05G105600' => 'cil', 'CiPaw.08G136700' => 'cil', 'CiPaw.11G003900' => 'cil', 'CiPaw.11G023700' => 'cil', 'CiPaw.12G003700' => 'cil', 'ClCG06G017100' => 'cla', 'ClCG06G018110' => 'cla', 'ClCG07G008800' => 'cla', 'ClCG07G015330' => 'cla', 'COL.COLO4_13698' => 'col', 'COL.COLO4_16659' => 'col', 'COL.COLO4_21986' => 'col', 'COL.COLO4_24049' => 'col', 'COL.COLO4_29061' => 'col', 'COL.COLO4_29075' => 'col', 'COL.COLO4_30094' => 'col', 'Cpa.g.c33689' => 'cpa', 'Cpa.g.sc108.39' => 'cpa', 'Cpa.g.sc108.41' => 'cpa', 'Cpa.g.sc1163.1' => 'cpa', 'Cpa.g.sc4.155' => 'cpa', 'Cpa.g.sc6.194' => 'cpa', 'CsaV3_1G000340' => 'csa', 'CsaV3_1G001400' => 'csa', 'CsaV3_4G002220' => 'csa', 'CsaV3_4G005370' => 'csa', 'CSS0007487' => 'camsi', 'CSS0008066' => 'camsi', 'CSS0009120' => 'camsi', 'CSS0015512' => 'camsi', 'CSS0022409' => 'camsi', 'CSS0025358' => 'camsi', 'CSS0044547' => 'camsi', 'DCAR_013057' => 'dca', 'DCAR_015058' => 'dca', 'DCAR_016027' => 'dca', 'DCAR_017327' => 'dca', 'DCAR_020743' => 'dca', 'DCAR_026157' => 'dca', 'DCAR_032339' => 'dca', 'DCAR_032340' => 'dca', 'Dinv11200' => 'din', 'Dinv11201' => 'din', 'Dinv20631' => 'din', 'Dinv23182' => 'din', 'Dinv33466' => 'din', 'Dinv33583' => 'din', 'Dinv38565' => 'din', 'Duzib068G0200' => 'dzi', 'Duzib147G0132' => 'dzi', 'Duzib147G0635' => 'dzi', 'Duzib205G1670' => 'dzi', 'Duzib251G0606' => 'dzi', 'ECA232G3336' => 'eca', 'ECA232G3763' => 'eca', 'ECA232G4845' => 'eca', 'ECA234G1607' => 'eca', 'ECA246G0932' => 'eca', 'ECA247G0781' => 'eca', 'ECA247G1932' => 'eca', 'ECA247G2079' => 'eca', 'ECA247G3338' => 'eca', 'ECA247G4115' => 'eca', 'EL10Ac3g06552' => 'bvu', 'EL10Ac5g10721' => 'bvu', 'EL10Ac5g10722' => 'bvu', 'EL10Ac5g10723' => 'bvu', 'EL10Ac5g11361' => 'bvu', 'EL10Ac6g13553' => 'bvu', 'EL10As8g23872' => 'bvu', 'Eucgr.B00250' => 'egr', 'Eucgr.B00251' => 'egr', 'Eucgr.B03533' => 'egr', 'Eucgr.I02381' => 'egr', 'Eucgr.K02700' => 'egr', 'FAN02G0174' => 'fan', 'FAN02G3146' => 'fan', 'FAN04G1672' => 'fan', 'FAN04G2273' => 'fan', 'FAN05G2791' => 'fan', 'FAN05G4035' => 'fan', 'FAN07G0834' => 'fan', 'FAN08G1198' => 'fan', 'FAN09G4182' => 'fan', 'FAN12G0496' => 'fan', 'FAN13G1027' => 'fan', 'FAN13G2951' => 'fan', 'FAN14G0705' => 'fan', 'FAN14G0720' => 'fan', 'FAN17G0201' => 'fan', 'FAN17G2665' => 'fan', 'FAN18G1456' => 'fan', 'FAN18G1525' => 'fan', 'FAN18G3500' => 'fan', 'FAN28G2670' => 'fan', 'FvH4_1g12391' => 'fve', 'FvH4_4g23220' => 'fve', 'FvH4_5g08810' => 'fve', 'FvH4_5g28960' => 'fve', 'FvH4_6g42820' => 'fve', 'FvH4_6g51110' => 'fve', 'Glyma.02G051802' => 'gma', 'Glyma.04G185300' => 'gma', 'Glyma.05G202900' => 'gma', 'Glyma.08G010300' => 'gma', 'Glyma.16G131900' => 'gma', 'Glyma.17G087900' => 'gma', 'Gohir.A07G048600' => 'ghi', 'Gohir.A11G179000' => 'ghi', 'Gohir.A12G140900' => 'ghi', 'Gohir.A12G140950' => 'ghi', 'Gohir.A12G191700' => 'ghi', 'Gohir.A13G086300' => 'ghi', 'Gohir.D07G052900' => 'ghi', 'Gohir.D11G186600' => 'ghi', 'Gohir.D12G145575' => 'ghi', 'Gohir.D12G145650' => 'ghi', 'Gohir.D12G145725' => 'ghi', 'Gohir.D12G194050' => 'ghi', 'Gohir.D13G091800' => 'ghi', 'Gorai.001G055900' => 'gra', 'Gorai.007G198400' => 'gra', 'Gorai.008G157000' => 'gra', 'Gorai.008G157100' => 'gra', 'Gorai.008G208700' => 'gra', 'Gorai.010G138700' => 'gra', 'GSVIVG01000977001' => 'vvi', 'GSVIVG01007708001' => 'vvi', 'GSVIVG01008587001' => 'vvi', 'GSVIVG01018849001' => 'vvi', 'GSVIVG01032432001' => 'vvi', 'HanXRQChr02g0034131' => 'han', 'HanXRQChr02g0035981' => 'han', 'HanXRQChr02g0035991' => 'han', 'HanXRQChr05g0155611' => 'han', 'HanXRQChr05g0155621' => 'han', 'HanXRQChr08g0236501' => 'han', 'HanXRQChr09g0261321' => 'han', 'HanXRQChr09g0272081' => 'han', 'HanXRQChr10g0310741' => 'han', 'HanXRQChr11g0325591' => 'han', 'HanXRQChr12g0385691' => 'han', 'HanXRQChr13g0387801' => 'han', 'HanXRQChr15g0463011' => 'han', 'Haze_03826' => 'cav', 'Haze_03827' => 'cav', 'Haze_07183' => 'cav', 'Haze_07537' => 'cav', 'Haze_07539' => 'cav', 'Haze_12461' => 'cav', 'Haze_16115' => 'cav', 'Haze_16808' => 'cav', 'Haze_18531' => 'cav', 'Hma1.2p1_0046F.1_g026700' => 'hma', 'Hma1.2p1_0046F.1_g026710' => 'hma', 'Hma1.2p1_0168F.1_g074340' => 'hma', 'Hma1.2p1_0266F.1_g107030' => 'hma', 'Hma1.2p1_0266F.1_g107060' => 'hma', 'Hma1.2p1_0275F.1_g110510' => 'hma', 'Hma1.2p1_0592F.1_g185490' => 'hma', 'Hma1.2p1_0592F.1_g185500' => 'hma', 'Hma1.2p1_0592F.1_g185510' => 'hma', 'Hma1.2p1_0592F.1_g185520' => 'hma', 'Hma1.2p1_0592F.1_g185530' => 'hma', 'Hma1.2p1_0818F.1_g223450' => 'hma', 'HPP92_009708' => 'vpl', 'HPP92_009793' => 'vpl', 'HPP92_009796' => 'vpl', 'HPP92_009797' => 'vpl', 'HPP92_014940' => 'vpl', 'HPP92_014988' => 'vpl', 'Hund02463' => 'sun', 'Hund02760' => 'sun', 'Hund05071' => 'sun', 'Hund10108' => 'sun', 'Hund11204' => 'sun', 'Hund14016' => 'sun', 'Hund16464' => 'sun', 'Lalb_Chr09g0333391' => 'lal', 'Lalb_Chr11g0070461' => 'lal', 'Lalb_Chr12g0201671' => 'lal', 'Lalb_Chr13g0297161' => 'lal', 'Lj1g0002823' => 'lja', 'Lj3C1074T6' => 'lonja', 'Lj4A212T28' => 'lonja', 'Lj4g0005516' => 'lja', 'Lj4g0013705' => 'lja', 'Lj4g0027865' => 'lja', 'Lj5C92G16' => 'lonja', 'Lj5C92T12' => 'lonja', 'Lj7C596T3' => 'lonja', 'Lj9A446G59' => 'lonja', 'Lj9A482G21' => 'lonja', 'Lsat_1_v5_gn_1_28261' => 'lsa', 'Lsat_1_v5_gn_1_28281' => 'lsa', 'Lsat_1_v5_gn_1_32721' => 'lsa', 'Lsat_1_v5_gn_4_151760' => 'lsa', 'Lsat_1_v5_gn_4_2120' => 'lsa', 'Lsat_1_v5_gn_4_75761' => 'lsa', 'Lsat_1_v5_gn_5_10920' => 'lsa', 'Manes.02G099900' => 'mes', 'Manes.11G096200' => 'mes', 'Manes.12G007200' => 'mes', 'Manes.14G048300' => 'mes', 'Manes.17G114700' => 'mes', 'Mapoly0002s0070' => 'mpo', 'Mapoly0029s0099' => 'mpo', 'MBI07_g24742_MAGBIO' => 'mbi', 'MBI10_g27988_MAGBIO' => 'mbi', 'MBI11_g13057_MAGBIO' => 'mbi', 'MD02G1137200' => 'mdo', 'MD06G1137200' => 'mdo', 'MD07G1122300' => 'mdo', 'MD09G1078200' => 'mdo', 'MD13G1123700' => 'mdo', 'MD14G1151900' => 'mdo', 'MD17G1030900' => 'mdo', 'MD17G1068200' => 'mdo', 'MD17G1068600' => 'mdo', 'Medtr3g077540' => 'mtr', 'Medtr4g105530' => 'mtr', 'Medtr8g076580' => 'mtr', 'Medtr8g076590' => 'mtr', 'Medtr8g096410' => 'mtr', 'MELO3C016411.2' => 'cme', 'MELO3C017780.2' => 'cme', 'MELO3C022560.2' => 'cme', 'MELO3C026187.2' => 'cme', 'MELO3C026286.2' => 'cme', 'MELO3C032854.2' => 'cme', 'Migut.H02495' => 'egut', 'Migut.I00561' => 'egut', 'Migut.K01015' => 'egut', 'Migut.K01016' => 'egut', 'Migut.L00743' => 'egut', 'Migut.L00744' => 'egut', 'Migut.L00746' => 'egut', 'Migut.L00798' => 'egut', 'Migut.L00799' => 'egut', 'Migut.N02096' => 'egut', 'MSTRG.11259' => 'ama', 'MSTRG.23142' => 'ama', 'MSTRG.2499' => 'ama', 'Nitab4.5_0000003g0730' => 'nta', 'Nitab4.5_0000137g0020' => 'nta', 'Nitab4.5_0000721g0210' => 'nta', 'Nitab4.5_0000723g0050' => 'nta', 'Nitab4.5_0000913g0070' => 'nta', 'Nitab4.5_0001332g0040' => 'nta', 'Nitab4.5_0001771g0050' => 'nta', 'Nitab4.5_0001918g0050' => 'nta', 'Nitab4.5_0002686g0030' => 'nta', 'Nitab4.5_0003156g0020' => 'nta', 'Nitab4.5_0003383g0040' => 'nta', 'Nitab4.5_0003918g0010' => 'nta', 'Nitab4.5_0006760g0010' => 'nta', 'Nn1g05981' => 'nnu', 'Nn1g06288' => 'nnu', 'Nn3g16371' => 'nnu', 'Nn3g16786' => 'nnu', 'Nn4g22232' => 'nnu', 'Oeu005144.1' => 'oeu', 'Oeu005145.1' => 'oeu', 'Oeu011348.1' => 'oeu', 'Oeu016415.1' => 'oeu', 'Oeu023501.1' => 'oeu', 'Oeu044473.1' => 'oeu', 'Oeu048892.2' => 'oeu', 'Os01g0549200' => 'osa', 'Os02g0469300' => 'osa', 'Os04g0311100' => 'osa', 'Os06g0474900' => 'osa', 'Os10g0181700' => 'osa', 'Os11g0454800' => 'osa', 'Peaxi162Scf00037g00714' => 'pax', 'Peaxi162Scf00084g01217' => 'pax', 'Peaxi162Scf00257g00217' => 'pax', 'Peaxi162Scf00516g00215' => 'pax', 'Peaxi162Scf00689g00123' => 'pax', 'PGR044G2719' => 'pgr', 'PGR083G1360' => 'pgr', 'PGR102G2849' => 'pgr', 'PGR119G2534' => 'pgr', 'PGSC0003DMG400003538' => 'stu', 'PGSC0003DMG400028138' => 'stu', 'PGSC0003DMG400031732' => 'stu', 'PGSC0003DMG400038165' => 'stu', 'Phvul.002G284600' => 'pvu', 'Phvul.003G258200' => 'pvu', 'Phvul.009G176500' => 'pvu', 'Potri.003G167201' => 'ptr', 'Potri.005G118400' => 'ptr', 'Potri.012G089000' => 'ptr', 'Potri.012G102800' => 'ptr', 'Potri.015G079400' => 'ptr', 'Potri.015G100900' => 'ptr', 'Pp3c14_9810' => 'ppa', 'Pp3c15_10450' => 'ppa', 'Pp3c20_19150' => 'ppa', 'Pp3c23_12740' => 'ppa', 'Pp3c23_6310' => 'ppa', 'Pp3c24_3720' => 'ppa', 'Pp3c27_2580' => 'ppa', 'Pp3c9_8990' => 'ppa', 'PRCOL_00002854' => 'pco', 'Prupe.1G221200' => 'ppe', 'Prupe.3G289000' => 'ppe', 'Prupe.5G147000' => 'ppe', 'Prupe.6G157300' => 'ppe', 'Prupe.7G163400' => 'ppe', 'Psat0s2177g0040' => 'psa', 'Psat3g174760' => 'psa', 'Psat3g192160' => 'psa', 'Psat4g058520' => 'psa', 'Psat4g096840' => 'psa', 'Psat7g037320' => 'psa', 'PSO017G1274' => 'pso', 'PSO017G5166' => 'pso', 'PSO063G4558' => 'pso', 'PSO170G4458' => 'pso', 'PSO170G5005' => 'pso', 'PSO210G6156' => 'pso', 'PSO210G6635' => 'pso', 'PSO210G7397' => 'pso', 'PSO210G7700' => 'pso', 'PSO455G0035' => 'pso', 'PSO455G0180' => 'pso', 'PSO478G4515' => 'pso', 'PSO832G1305' => 'pso', 'PSO832G3489' => 'pso', 'QL02p075247' => 'qlo', 'QL03p051148' => 'qlo', 'QL05p010313' => 'qlo', 'QL06p034627' => 'qlo', 'QL10p001889' => 'qlo', 'QL10p010846' => 'qlo', 'RcHm_v2.0_Chr1g0350621' => 'rch', 'RcHm_v2.0_Chr1g0350641' => 'rch', 'RcHm_v2.0_Chr2g0092891' => 'rch', 'RcHm_v2.0_Chr2g0100251' => 'rch', 'RcHm_v2.0_Chr2g0158661' => 'rch', 'RcHm_v2.0_Chr2g0172741' => 'rch', 'RcHm_v2.0_Chr4g0429571' => 'rch', 'RcHm_v2.0_Chr5g0042471' => 'rch', 'RcHm_v2.0_Chr7g0189451' => 'rch', 'Rhsim08G0052000' => 'rsi', 'Rhsim08G0174400' => 'rsi', 'Rhsim08G0193200' => 'rsi', 'Rhsim10G0214800' => 'rsi', 'Rhsim10G0214900' => 'rsi', 'Rhsim10G0215000' => 'rsi', 'Rhsim12G0022900' => 'rsi', 'Rhsim12G0177500' => 'rsi', 'Rhsim12G0177700' => 'rsi', 'Sabra03G0122600' => 'sbr', 'Sabra05G0097400' => 'sbr', 'Sabra12G0064100' => 'sbr', 'Sabra15G0121300' => 'sbr', 'SalBow2G0642' => 'sbo', 'SalBow5G2667' => 'sbo', 'SalBow5G4873' => 'sbo', 'SalBow8G2395' => 'sbo', 'Sc03g0003290' => 'sci', 'Sc10g0010130' => 'sci', 'Sc22g0003650' => 'sci', 'Sed0001603' => 'sed', 'Sed0004259' => 'sed', 'Sed0006789' => 'sed', 'Sed0011838' => 'sed', 'Sed0012964' => 'sed', 'Sed0016383' => 'sed', 'Sed0019010' => 'sed', 'Sed0020188' => 'sed', 'SEGI_04702' => 'sgi', 'SEGI_17231' => 'sgi', 'SEGI_18877' => 'sgi', 'SEGI_25196' => 'sgi', 'SEGI_25515' => 'sgi', 'SEGI_28445' => 'sgi', 'SEGI_37452' => 'sgi', 'SGA_v2.0_scaffold188G40336' => 'sas', 'SGA_v2.0_scaffold228G43247' => 'sas', 'SGA_v2.0_scaffold280G46853' => 'sas', 'SGA_v2.0_scaffold34G13808' => 'sas', 'SGA_v2.0_scaffold40G15576' => 'sas', 'SGA_v2.0_scaffold611G53188' => 'sas', 'SGA_v2.0_scaffold78G25461' => 'sas', 'SGA_v2.0_scaffold90G27888' => 'sas', 'SHI08601' => 'shi', 'SHI08606' => 'shi', 'SHI17117' => 'shi', 'SHI17119' => 'shi', 'SMO118G0201' => 'smo', 'SMO169G0247' => 'smo', 'SMO176G0006' => 'smo', 'SMO176G0015' => 'smo', 'SMO202G0006' => 'smo', 'SMO240G0050' => 'smo', 'SMO286G0009' => 'smo', 'SMO338G0033' => 'smo', 'SMO356G0533' => 'smo', 'SMO364G0382' => 'smo', 'SMO367G0166' => 'smo', 'SMO367G1098' => 'smo', 'Solyc01g009920.3' => 'sly', 'Solyc01g099300.3' => 'sly', 'Solyc02g084700.3' => 'sly', 'Solyc03g097520.3' => 'sly', 'Solyc06g071580.3' => 'sly', 'Solyc10g081760.3' => 'sly', 'Sopen01g005480' => 'spe', 'Sopen01g042850' => 'spe', 'Sopen02g029370' => 'spe', 'Sopen03g028280' => 'spe', 'Sopen06g027870' => 'spe', 'Sopen10g032270' => 'spe', 'Sp5g18180' => 'spa', 'Sp6g12880' => 'spa', 'Sp6g30850' => 'spa', 'Sp7g22960' => 'spa', 'Sp7g34010' => 'spa', 'SpUn1326_0010' => 'spa', 'TAR371G0242' => 'tar', 'TAR622G0638' => 'tar', 'TAR628G1548' => 'tar', 'TAR629G1079' => 'tar', 'TAR629G3413' => 'tar', 'THA.LOC104804249' => 'tha', 'THA.LOC104808315' => 'tha', 'THA.LOC104809238' => 'tha', 'THA.LOC104825484' => 'tha', 'Thecc.01G025500' => 'tca', 'Thecc.03G015800' => 'tca', 'Thecc.03G018000' => 'tca', 'Thecc.03G134800' => 'tca', 'Thecc.04G014700' => 'tca', 'Thhalv10006991m.g' => 'esa', 'Thhalv10012707m.g' => 'esa', 'Thhalv10015739m.g' => 'esa', 'Thhalv10024553m.g' => 'esa', 'Thhalv10024673m.g' => 'esa', 'Thhalv10029187m.g' => 'esa', 'TPR.G12971' => 'tpr', 'TPR.G29396' => 'tpr', 'TPR.G33376' => 'tpr', 'TPR.G35508' => 'tpr', 'TPR.G35516' => 'tpr', 'TPR.G37317' => 'tpr', 'TPR.G37389' => 'tpr', 'TPR.G37523' => 'tpr', 'TPR.G559' => 'tpr', 'TWI14G0070' => 'twi', 'TWI14G0729' => 'twi', 'TWI18G0596' => 'twi', 'TWI39G0780' => 'twi', 'TWI39G0850' => 'twi', 'TWI73G1052' => 'twi', 'unitig_52.g17485' => 'ugi', 'unitig_61.g26355' => 'ugi', 'vmacro01040' => 'vma', 'vmacro16731' => 'vma', 'vmacro18270' => 'vma', 'vmacro19142' => 'vma', 'vmacro19407' => 'vma', 'vmacro19408' => 'vma', 'vmacro21899' => 'vma', 'vmacro21900' => 'vma', 'vmacro21901' => 'vma', 'VMungo0251G0490' => 'vmu', 'VMungo0251G1748' => 'vmu', 'VMungo1309G0421' => 'vmu', 'Zm00001eb086500' => 'zma', 'Zm00001eb150680' => 'zma', 'Zm00001eb162330' => 'zma', 'Zm00001eb203130' => 'zma', 'Zm00001eb369480' => 'zma', 'Zm00001eb382340' => 'zma', 'Zm00001eb416360' => 'zma' ), 'gf_id' => 'HOM05D000902', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000902' ), 'data_identifier' => 'HOM05D000902', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000902', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '663', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02470' => 'bna', 'A01p16260' => 'bna', 'A02p01680' => 'bna', 'A03p16600' => 'bna', 'A03p55660' => 'bna', 'A03p64160' => 'bna', 'A03p64170' => 'bna', 'A08p31900' => 'bna', 'A09p59530' => 'bna', 'A10p08230' => 'bna', 'A10p25090' => 'bna', 'Aa31LG3G7100' => 'aar', 'Aa31LG3G7110' => 'aar', 'Aa31LG6G13160' => 'aar', 'Aa31LG7G10770' => 'aar', 'Aa31LG7G3830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2723' => 'aag', 'Actinidia08045' => 'ach', 'Actinidia08888' => 'ach', 'Actinidia18333' => 'ach', 'Actinidia19334' => 'ach', 'Actinidia25552' => 'ach', 'Actinidia26089' => 'ach', 'Actinidia30615' => 'ach', 'Actinidia30616' => 'ach', 'Actinidia33083' => 'ach', 'Actinidia35762' => 'ach', 'Ah.02g110620' => 'amhyb', 'Ah.11g046390' => 'amhyb', 'AL1G31670' => 'aly', 'AL6G23730' => 'aly', 'AL7G14740' => 'aly', 'AL7G14750' => 'aly', 'AL7G14760' => 'aly', 'AL7G28220' => 'aly', 'AL8G24940' => 'aly', 'Aqoxy3G01665' => 'aox', 'Aqoxy3G02853' => 'aox', 'Aqoxy5G01513' => 'aox', 'Aqoxy5G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8SKA4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ75LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKDA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0LJZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7REX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZP4YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWX7I5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2QKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS0L9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPCD8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q161UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC7XCF' => 'arhy', 'AT1G19100' => 'ath', 'AT4G24970' => 'ath', 'AT4G36270' => 'ath', 'AT4G36280' => 'ath', 'AT4G36290' => 'ath', 'AT5G13130' => 'ath', 'AT5G50780' => 'ath', 'ATR0582G266' => 'atr', 'ATR0661G195' => 'atr', 'ATR1152G031' => 'atr', 'Atru.chr11.2382' => 'acertr', 'Atru.chr12.2337' => 'acertr', 'Atru.chr3.744' => 'acertr', 'Atru.chr6.1870' => 'acertr', 'Atru.chr9.2515' => 'acertr', 'AUR62004120' => 'cqu', 'AUR62005667' => 'cqu', 'AUR62007634' => 'cqu', 'AUR62008186' => 'cqu', 'AUR62008187' => 'cqu', 'AUR62008188' => 'cqu', 'AUR62027954' => 'cqu', 'AUR62028766' => 'cqu', 'AUR62028767' => 'cqu', 'AUR62028768' => 'cqu', 'AUR62028886' => 'cqu', 'AUR62029563' => 'cqu', 'AUR62038832' => 'cqu', 'BcaB01g04149' => 'bca', 'BcaB03g12940' => 'bca', 'BcaB03g13090' => 'bca', 'BcaB03g14466' => 'bca', 'BcaB05g24035' => 'bca', 'BcaC01g06050' => 'bca', 'BcaC04g19148' => 'bca', 'BcaC04g20761' => 'bca', 'BcaC06g32845' => 'bca', 'BcaC07g41274' => 'bca', 'BcaC09g50827' => 'bca', 'BcaNung00741' => 'bca', 'BcaNung00742' => 'bca', 'BcaNung01859' => 'bca', 'BcaNung03985' => 'bca', 'BcaNung03989' => 'bca', 'BcaNung05661' => 'bca', 'BolC1t00257H' => 'bol', 'BolC1t01956H' => 'bol', 'BolC2t06534H' => 'bol', 'BolC3t14334H' => 'bol', 'BolC5t30451H' => 'bol', 'BolC7t45880H' => 'bol', 'BolC7t46586H' => 'bol', 'BolC8t49301H' => 'bol', 'BolC8t51837H' => 'bol', 'BolC9t56822H' => 'bol', 'BolC9t59235H' => 'bol', 'BraA01t00234Z' => 'bra', 'BraA01t01563Z' => 'bra', 'BraA02t05147Z' => 'bra', 'BraA03t10947Z' => 'bra', 'BraA03t14633Z' => 'bra', 'BraA08t35112Z' => 'bra', 'BraA09t41330Z' => 'bra', 'BraA10t44570Z' => 'bra', 'C01p02670' => 'bna', 'C01p20260' => 'bna', 'C02p05890' => 'bna', 'C03p19530' => 'bna', 'C05p17470' => 'bna', 'C07p53900' => 'bna', 'C07p61630' => 'bna', 'C08p16800' => 'bna', 'C08p42810' => 'bna', 'C09p39480' => 'bna', 'C09p63980' => 'bna', 'CAN.G1001.7' => 'can', 'CAN.G1034.55' => 'can', 'CAN.G143.7' => 'can', 'CAN.G3340.1' => 'can', 'CAN.G358.19' => 'can', 'CAN.G373.2' => 'can', 'CAN.G674.16' => 'can', 'CAN.G674.17' => 'can', 'CAN.G674.18' => 'can', 'CAN.G732.2' => 'can', 'CAN.G732.3' => 'can', 'CAN.G993.39' => 'can', 'CANSAT01G2052' => 'cansat', 'CANSAT80G0070' => 'cansat', 'CANSAT80G0483' => 'cansat', 'CANSAT80G0625' => 'cansat', 'CARHR019690' => 'chi', 'CARHR080280' => 'chi', 'CARHR152750' => 'chi', 'CARHR152760' => 'chi', 'CARHR152770' => 'chi', 'CARHR200340' => 'chi', 'CARHR232370' => 'chi', 'CARHR244670' => 'chi', 'CARHR244680' => 'chi', 'CARHR257520' => 'chi', 'Carub.0001s1872' => 'cru', 'Carub.0006s1130' => 'cru', 'Carub.0007s0396' => 'cru', 'Carub.0007s0397' => 'cru', 'Carub.0007s1608' => 'cru', 'Carub.0008s1068' => 'cru', 'Carub.0008s1077' => 'cru', 'Ca_16158_v3' => 'car', 'Ca_17571_v3' => 'car', 'Ca_21936_v3' => 'car', 'Ca_22350_v3' => 'car', 'CBR_g22445' => 'cbr', 'CBR_g26290' => 'cbr', 'Cc04_g09610' => 'ccan', 'Cc04_g12280' => 'ccan', 'Cc07_g10230' => 'ccan', 'CDE02G0093' => 'cde', 'CDE02G0701' => 'cde', 'CDE04G1050' => 'cde', 'CDE05G1833' => 'cde', 'CDE05G3058' => 'cde', 'CDE05G3380' => 'cde', 'CDE06G0536' => 'cde', 'Cfa006923' => 'cfa', 'Cfa009402' => 'cfa', 'Cfa018751' => 'cfa', 'Cfa019164' => 'cfa', 'Cfa022935' => 'cfa', 'Ciclev10019081m.g' => 'ccl', 'Ciclev10025076m.g' => 'ccl', 'Ciclev10030712m.g' => 'ccl', 'Ciclev10033760m.g' => 'ccl', 'CiPaw.05G105600' => 'cil', 'CiPaw.08G136700' => 'cil', 'CiPaw.11G003900' => 'cil', 'CiPaw.11G023700' => 'cil', 'CiPaw.12G003700' => 'cil', 'ClCG06G017100' => 'cla', 'ClCG06G018110' => 'cla', 'ClCG07G008800' => 'cla', 'ClCG07G015330' => 'cla', 'COL.COLO4_13698' => 'col', 'COL.COLO4_16659' => 'col', 'COL.COLO4_21986' => 'col', 'COL.COLO4_24049' => 'col', 'COL.COLO4_29061' => 'col', 'COL.COLO4_29075' => 'col', 'COL.COLO4_30094' => 'col', 'Cpa.g.c33689' => 'cpa', 'Cpa.g.sc108.39' => 'cpa', 'Cpa.g.sc108.41' => 'cpa', 'Cpa.g.sc1163.1' => 'cpa', 'Cpa.g.sc4.155' => 'cpa', 'Cpa.g.sc6.194' => 'cpa', 'CsaV3_1G000340' => 'csa', 'CsaV3_1G001400' => 'csa', 'CsaV3_4G002220' => 'csa', 'CsaV3_4G005370' => 'csa', 'CSS0007487' => 'camsi', 'CSS0008066' => 'camsi', 'CSS0009120' => 'camsi', 'CSS0015512' => 'camsi', 'CSS0022409' => 'camsi', 'CSS0025358' => 'camsi', 'CSS0044547' => 'camsi', 'DCAR_013057' => 'dca', 'DCAR_015058' => 'dca', 'DCAR_016027' => 'dca', 'DCAR_017327' => 'dca', 'DCAR_020743' => 'dca', 'DCAR_026157' => 'dca', 'DCAR_032339' => 'dca', 'DCAR_032340' => 'dca', 'Dinv11200' => 'din', 'Dinv11201' => 'din', 'Dinv20631' => 'din', 'Dinv23182' => 'din', 'Dinv33466' => 'din', 'Dinv33583' => 'din', 'Dinv38565' => 'din', 'Duzib068G0200' => 'dzi', 'Duzib147G0132' => 'dzi', 'Duzib147G0635' => 'dzi', 'Duzib205G1670' => 'dzi', 'Duzib251G0606' => 'dzi', 'ECA232G3336' => 'eca', 'ECA232G3763' => 'eca', 'ECA232G4845' => 'eca', 'ECA234G1607' => 'eca', 'ECA246G0932' => 'eca', 'ECA247G0781' => 'eca', 'ECA247G1932' => 'eca', 'ECA247G2079' => 'eca', 'ECA247G3338' => 'eca', 'ECA247G4115' => 'eca', 'EL10Ac3g06552' => 'bvu', 'EL10Ac5g10721' => 'bvu', 'EL10Ac5g10722' => 'bvu', 'EL10Ac5g10723' => 'bvu', 'EL10Ac5g11361' => 'bvu', 'EL10Ac6g13553' => 'bvu', 'EL10As8g23872' => 'bvu', 'Eucgr.B00250' => 'egr', 'Eucgr.B00251' => 'egr', 'Eucgr.B03533' => 'egr', 'Eucgr.I02381' => 'egr', 'Eucgr.K02700' => 'egr', 'FAN02G0174' => 'fan', 'FAN02G3146' => 'fan', 'FAN04G1672' => 'fan', 'FAN04G2273' => 'fan', 'FAN05G2791' => 'fan', 'FAN05G4035' => 'fan', 'FAN07G0834' => 'fan', 'FAN08G1198' => 'fan', 'FAN09G4182' => 'fan', 'FAN12G0496' => 'fan', 'FAN13G1027' => 'fan', 'FAN13G2951' => 'fan', 'FAN14G0705' => 'fan', 'FAN14G0720' => 'fan', 'FAN17G0201' => 'fan', 'FAN17G2665' => 'fan', 'FAN18G1456' => 'fan', 'FAN18G1525' => 'fan', 'FAN18G3500' => 'fan', 'FAN28G2670' => 'fan', 'FvH4_1g12391' => 'fve', 'FvH4_4g23220' => 'fve', 'FvH4_5g08810' => 'fve', 'FvH4_5g28960' => 'fve', 'FvH4_6g42820' => 'fve', 'FvH4_6g51110' => 'fve', 'Glyma.02G051802' => 'gma', 'Glyma.04G185300' => 'gma', 'Glyma.05G202900' => 'gma', 'Glyma.08G010300' => 'gma', 'Glyma.16G131900' => 'gma', 'Glyma.17G087900' => 'gma', 'Gohir.A07G048600' => 'ghi', 'Gohir.A11G179000' => 'ghi', 'Gohir.A12G140900' => 'ghi', 'Gohir.A12G140950' => 'ghi', 'Gohir.A12G191700' => 'ghi', 'Gohir.A13G086300' => 'ghi', 'Gohir.D07G052900' => 'ghi', 'Gohir.D11G186600' => 'ghi', 'Gohir.D12G145575' => 'ghi', 'Gohir.D12G145650' => 'ghi', 'Gohir.D12G145725' => 'ghi', 'Gohir.D12G194050' => 'ghi', 'Gohir.D13G091800' => 'ghi', 'Gorai.001G055900' => 'gra', 'Gorai.007G198400' => 'gra', 'Gorai.008G157000' => 'gra', 'Gorai.008G157100' => 'gra', 'Gorai.008G208700' => 'gra', 'Gorai.010G138700' => 'gra', 'GSVIVG01000977001' => 'vvi', 'GSVIVG01007708001' => 'vvi', 'GSVIVG01008587001' => 'vvi', 'GSVIVG01018849001' => 'vvi', 'GSVIVG01032432001' => 'vvi', 'HanXRQChr02g0034131' => 'han', 'HanXRQChr02g0035981' => 'han', 'HanXRQChr02g0035991' => 'han', 'HanXRQChr05g0155611' => 'han', 'HanXRQChr05g0155621' => 'han', 'HanXRQChr08g0236501' => 'han', 'HanXRQChr09g0261321' => 'han', 'HanXRQChr09g0272081' => 'han', 'HanXRQChr10g0310741' => 'han', 'HanXRQChr11g0325591' => 'han', 'HanXRQChr12g0385691' => 'han', 'HanXRQChr13g0387801' => 'han', 'HanXRQChr15g0463011' => 'han', 'Haze_03826' => 'cav', 'Haze_03827' => 'cav', 'Haze_07183' => 'cav', 'Haze_07537' => 'cav', 'Haze_07539' => 'cav', 'Haze_12461' => 'cav', 'Haze_16115' => 'cav', 'Haze_16808' => 'cav', 'Haze_18531' => 'cav', 'Hma1.2p1_0046F.1_g026700' => 'hma', 'Hma1.2p1_0046F.1_g026710' => 'hma', 'Hma1.2p1_0168F.1_g074340' => 'hma', 'Hma1.2p1_0266F.1_g107030' => 'hma', 'Hma1.2p1_0266F.1_g107060' => 'hma', 'Hma1.2p1_0275F.1_g110510' => 'hma', 'Hma1.2p1_0592F.1_g185490' => 'hma', 'Hma1.2p1_0592F.1_g185500' => 'hma', 'Hma1.2p1_0592F.1_g185510' => 'hma', 'Hma1.2p1_0592F.1_g185520' => 'hma', 'Hma1.2p1_0592F.1_g185530' => 'hma', 'Hma1.2p1_0818F.1_g223450' => 'hma', 'HPP92_009708' => 'vpl', 'HPP92_009793' => 'vpl', 'HPP92_009796' => 'vpl', 'HPP92_009797' => 'vpl', 'HPP92_014940' => 'vpl', 'HPP92_014988' => 'vpl', 'Hund02463' => 'sun', 'Hund02760' => 'sun', 'Hund05071' => 'sun', 'Hund10108' => 'sun', 'Hund11204' => 'sun', 'Hund14016' => 'sun', 'Hund16464' => 'sun', 'Lalb_Chr09g0333391' => 'lal', 'Lalb_Chr11g0070461' => 'lal', 'Lalb_Chr12g0201671' => 'lal', 'Lalb_Chr13g0297161' => 'lal', 'Lj1g0002823' => 'lja', 'Lj3C1074T6' => 'lonja', 'Lj4A212T28' => 'lonja', 'Lj4g0005516' => 'lja', 'Lj4g0013705' => 'lja', 'Lj4g0027865' => 'lja', 'Lj5C92G16' => 'lonja', 'Lj5C92T12' => 'lonja', 'Lj7C596T3' => 'lonja', 'Lj9A446G59' => 'lonja', 'Lj9A482G21' => 'lonja', 'Lsat_1_v5_gn_1_28261' => 'lsa', 'Lsat_1_v5_gn_1_28281' => 'lsa', 'Lsat_1_v5_gn_1_32721' => 'lsa', 'Lsat_1_v5_gn_4_151760' => 'lsa', 'Lsat_1_v5_gn_4_2120' => 'lsa', 'Lsat_1_v5_gn_4_75761' => 'lsa', 'Lsat_1_v5_gn_5_10920' => 'lsa', 'Manes.02G099900' => 'mes', 'Manes.11G096200' => 'mes', 'Manes.12G007200' => 'mes', 'Manes.14G048300' => 'mes', 'Manes.17G114700' => 'mes', 'Mapoly0002s0070' => 'mpo', 'Mapoly0029s0099' => 'mpo', 'MBI07_g24742_MAGBIO' => 'mbi', 'MBI10_g27988_MAGBIO' => 'mbi', 'MBI11_g13057_MAGBIO' => 'mbi', 'MD02G1137200' => 'mdo', 'MD06G1137200' => 'mdo', 'MD07G1122300' => 'mdo', 'MD09G1078200' => 'mdo', 'MD13G1123700' => 'mdo', 'MD14G1151900' => 'mdo', 'MD17G1030900' => 'mdo', 'MD17G1068200' => 'mdo', 'MD17G1068600' => 'mdo', 'Medtr3g077540' => 'mtr', 'Medtr4g105530' => 'mtr', 'Medtr8g076580' => 'mtr', 'Medtr8g076590' => 'mtr', 'Medtr8g096410' => 'mtr', 'MELO3C016411.2' => 'cme', 'MELO3C017780.2' => 'cme', 'MELO3C022560.2' => 'cme', 'MELO3C026187.2' => 'cme', 'MELO3C026286.2' => 'cme', 'MELO3C032854.2' => 'cme', 'Migut.H02495' => 'egut', 'Migut.I00561' => 'egut', 'Migut.K01015' => 'egut', 'Migut.K01016' => 'egut', 'Migut.L00743' => 'egut', 'Migut.L00744' => 'egut', 'Migut.L00746' => 'egut', 'Migut.L00798' => 'egut', 'Migut.L00799' => 'egut', 'Migut.N02096' => 'egut', 'MSTRG.11259' => 'ama', 'MSTRG.23142' => 'ama', 'MSTRG.2499' => 'ama', 'Nitab4.5_0000003g0730' => 'nta', 'Nitab4.5_0000137g0020' => 'nta', 'Nitab4.5_0000721g0210' => 'nta', 'Nitab4.5_0000723g0050' => 'nta', 'Nitab4.5_0000913g0070' => 'nta', 'Nitab4.5_0001332g0040' => 'nta', 'Nitab4.5_0001771g0050' => 'nta', 'Nitab4.5_0001918g0050' => 'nta', 'Nitab4.5_0002686g0030' => 'nta', 'Nitab4.5_0003156g0020' => 'nta', 'Nitab4.5_0003383g0040' => 'nta', 'Nitab4.5_0003918g0010' => 'nta', 'Nitab4.5_0006760g0010' => 'nta', 'Nn1g05981' => 'nnu', 'Nn1g06288' => 'nnu', 'Nn3g16371' => 'nnu', 'Nn3g16786' => 'nnu', 'Nn4g22232' => 'nnu', 'Oeu005144.1' => 'oeu', 'Oeu005145.1' => 'oeu', 'Oeu011348.1' => 'oeu', 'Oeu016415.1' => 'oeu', 'Oeu023501.1' => 'oeu', 'Oeu044473.1' => 'oeu', 'Oeu048892.2' => 'oeu', 'Os01g0549200' => 'osa', 'Os02g0469300' => 'osa', 'Os04g0311100' => 'osa', 'Os06g0474900' => 'osa', 'Os10g0181700' => 'osa', 'Os11g0454800' => 'osa', 'Peaxi162Scf00037g00714' => 'pax', 'Peaxi162Scf00084g01217' => 'pax', 'Peaxi162Scf00257g00217' => 'pax', 'Peaxi162Scf00516g00215' => 'pax', 'Peaxi162Scf00689g00123' => 'pax', 'PGR044G2719' => 'pgr', 'PGR083G1360' => 'pgr', 'PGR102G2849' => 'pgr', 'PGR119G2534' => 'pgr', 'PGSC0003DMG400003538' => 'stu', 'PGSC0003DMG400028138' => 'stu', 'PGSC0003DMG400031732' => 'stu', 'PGSC0003DMG400038165' => 'stu', 'Phvul.002G284600' => 'pvu', 'Phvul.003G258200' => 'pvu', 'Phvul.009G176500' => 'pvu', 'Potri.003G167201' => 'ptr', 'Potri.005G118400' => 'ptr', 'Potri.012G089000' => 'ptr', 'Potri.012G102800' => 'ptr', 'Potri.015G079400' => 'ptr', 'Potri.015G100900' => 'ptr', 'Pp3c14_9810' => 'ppa', 'Pp3c15_10450' => 'ppa', 'Pp3c20_19150' => 'ppa', 'Pp3c23_12740' => 'ppa', 'Pp3c23_6310' => 'ppa', 'Pp3c24_3720' => 'ppa', 'Pp3c27_2580' => 'ppa', 'Pp3c9_8990' => 'ppa', 'PRCOL_00002854' => 'pco', 'Prupe.1G221200' => 'ppe', 'Prupe.3G289000' => 'ppe', 'Prupe.5G147000' => 'ppe', 'Prupe.6G157300' => 'ppe', 'Prupe.7G163400' => 'ppe', 'Psat0s2177g0040' => 'psa', 'Psat3g174760' => 'psa', 'Psat3g192160' => 'psa', 'Psat4g058520' => 'psa', 'Psat4g096840' => 'psa', 'Psat7g037320' => 'psa', 'PSO017G1274' => 'pso', 'PSO017G5166' => 'pso', 'PSO063G4558' => 'pso', 'PSO170G4458' => 'pso', 'PSO170G5005' => 'pso', 'PSO210G6156' => 'pso', 'PSO210G6635' => 'pso', 'PSO210G7397' => 'pso', 'PSO210G7700' => 'pso', 'PSO455G0035' => 'pso', 'PSO455G0180' => 'pso', 'PSO478G4515' => 'pso', 'PSO832G1305' => 'pso', 'PSO832G3489' => 'pso', 'QL02p075247' => 'qlo', 'QL03p051148' => 'qlo', 'QL05p010313' => 'qlo', 'QL06p034627' => 'qlo', 'QL10p001889' => 'qlo', 'QL10p010846' => 'qlo', 'RcHm_v2.0_Chr1g0350621' => 'rch', 'RcHm_v2.0_Chr1g0350641' => 'rch', 'RcHm_v2.0_Chr2g0092891' => 'rch', 'RcHm_v2.0_Chr2g0100251' => 'rch', 'RcHm_v2.0_Chr2g0158661' => 'rch', 'RcHm_v2.0_Chr2g0172741' => 'rch', 'RcHm_v2.0_Chr4g0429571' => 'rch', 'RcHm_v2.0_Chr5g0042471' => 'rch', 'RcHm_v2.0_Chr7g0189451' => 'rch', 'Rhsim08G0052000' => 'rsi', 'Rhsim08G0174400' => 'rsi', 'Rhsim08G0193200' => 'rsi', 'Rhsim10G0214800' => 'rsi', 'Rhsim10G0214900' => 'rsi', 'Rhsim10G0215000' => 'rsi', 'Rhsim12G0022900' => 'rsi', 'Rhsim12G0177500' => 'rsi', 'Rhsim12G0177700' => 'rsi', 'Sabra03G0122600' => 'sbr', 'Sabra05G0097400' => 'sbr', 'Sabra12G0064100' => 'sbr', 'Sabra15G0121300' => 'sbr', 'SalBow2G0642' => 'sbo', 'SalBow5G2667' => 'sbo', 'SalBow5G4873' => 'sbo', 'SalBow8G2395' => 'sbo', 'Sc03g0003290' => 'sci', 'Sc10g0010130' => 'sci', 'Sc22g0003650' => 'sci', 'Sed0001603' => 'sed', 'Sed0004259' => 'sed', 'Sed0006789' => 'sed', 'Sed0011838' => 'sed', 'Sed0012964' => 'sed', 'Sed0016383' => 'sed', 'Sed0019010' => 'sed', 'Sed0020188' => 'sed', 'SEGI_04702' => 'sgi', 'SEGI_17231' => 'sgi', 'SEGI_18877' => 'sgi', 'SEGI_25196' => 'sgi', 'SEGI_25515' => 'sgi', 'SEGI_28445' => 'sgi', 'SEGI_37452' => 'sgi', 'SGA_v2.0_scaffold188G40336' => 'sas', 'SGA_v2.0_scaffold228G43247' => 'sas', 'SGA_v2.0_scaffold280G46853' => 'sas', 'SGA_v2.0_scaffold34G13808' => 'sas', 'SGA_v2.0_scaffold40G15576' => 'sas', 'SGA_v2.0_scaffold611G53188' => 'sas', 'SGA_v2.0_scaffold78G25461' => 'sas', 'SGA_v2.0_scaffold90G27888' => 'sas', 'SHI08601' => 'shi', 'SHI08606' => 'shi', 'SHI17117' => 'shi', 'SHI17119' => 'shi', 'SMO118G0201' => 'smo', 'SMO169G0247' => 'smo', 'SMO176G0006' => 'smo', 'SMO176G0015' => 'smo', 'SMO202G0006' => 'smo', 'SMO240G0050' => 'smo', 'SMO286G0009' => 'smo', 'SMO338G0033' => 'smo', 'SMO356G0533' => 'smo', 'SMO364G0382' => 'smo', 'SMO367G0166' => 'smo', 'SMO367G1098' => 'smo', 'Solyc01g009920.3' => 'sly', 'Solyc01g099300.3' => 'sly', 'Solyc02g084700.3' => 'sly', 'Solyc03g097520.3' => 'sly', 'Solyc06g071580.3' => 'sly', 'Solyc10g081760.3' => 'sly', 'Sopen01g005480' => 'spe', 'Sopen01g042850' => 'spe', 'Sopen02g029370' => 'spe', 'Sopen03g028280' => 'spe', 'Sopen06g027870' => 'spe', 'Sopen10g032270' => 'spe', 'Sp5g18180' => 'spa', 'Sp6g12880' => 'spa', 'Sp6g30850' => 'spa', 'Sp7g22960' => 'spa', 'Sp7g34010' => 'spa', 'SpUn1326_0010' => 'spa', 'TAR371G0242' => 'tar', 'TAR622G0638' => 'tar', 'TAR628G1548' => 'tar', 'TAR629G1079' => 'tar', 'TAR629G3413' => 'tar', 'THA.LOC104804249' => 'tha', 'THA.LOC104808315' => 'tha', 'THA.LOC104809238' => 'tha', 'THA.LOC104825484' => 'tha', 'Thecc.01G025500' => 'tca', 'Thecc.03G015800' => 'tca', 'Thecc.03G018000' => 'tca', 'Thecc.03G134800' => 'tca', 'Thecc.04G014700' => 'tca', 'Thhalv10006991m.g' => 'esa', 'Thhalv10012707m.g' => 'esa', 'Thhalv10015739m.g' => 'esa', 'Thhalv10024553m.g' => 'esa', 'Thhalv10024673m.g' => 'esa', 'Thhalv10029187m.g' => 'esa', 'TPR.G12971' => 'tpr', 'TPR.G29396' => 'tpr', 'TPR.G33376' => 'tpr', 'TPR.G35508' => 'tpr', 'TPR.G35516' => 'tpr', 'TPR.G37317' => 'tpr', 'TPR.G37389' => 'tpr', 'TPR.G37523' => 'tpr', 'TPR.G559' => 'tpr', 'TWI14G0070' => 'twi', 'TWI14G0729' => 'twi', 'TWI18G0596' => 'twi', 'TWI39G0780' => 'twi', 'TWI39G0850' => 'twi', 'TWI73G1052' => 'twi', 'unitig_52.g17485' => 'ugi', 'unitig_61.g26355' => 'ugi', 'vmacro01040' => 'vma', 'vmacro16731' => 'vma', 'vmacro18270' => 'vma', 'vmacro19142' => 'vma', 'vmacro19407' => 'vma', 'vmacro19408' => 'vma', 'vmacro21899' => 'vma', 'vmacro21900' => 'vma', 'vmacro21901' => 'vma', 'VMungo0251G0490' => 'vmu', 'VMungo0251G1748' => 'vmu', 'VMungo1309G0421' => 'vmu', 'Zm00001eb086500' => 'zma', 'Zm00001eb150680' => 'zma', 'Zm00001eb162330' => 'zma', 'Zm00001eb203130' => 'zma', 'Zm00001eb369480' => 'zma', 'Zm00001eb382340' => 'zma', 'Zm00001eb416360' => 'zma' ) $gf_id = 'HOM05D000902' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000902' ) $data_identifier = 'HOM05D000902' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 13, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 10, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 6, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 9, 'hma' => (int) 12, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 4, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 6, 'ppa' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 6, 'rch' => (int) 9, 'rsi' => (int) 9, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 12, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 3, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416360' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000902', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '663', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02470' => 'bna', 'A01p16260' => 'bna', 'A02p01680' => 'bna', 'A03p16600' => 'bna', 'A03p55660' => 'bna', 'A03p64160' => 'bna', 'A03p64170' => 'bna', 'A08p31900' => 'bna', 'A09p59530' => 'bna', 'A10p08230' => 'bna', 'A10p25090' => 'bna', 'Aa31LG3G7100' => 'aar', 'Aa31LG3G7110' => 'aar', 'Aa31LG6G13160' => 'aar', 'Aa31LG7G10770' => 'aar', 'Aa31LG7G3830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2723' => 'aag', 'Actinidia08045' => 'ach', 'Actinidia08888' => 'ach', 'Actinidia18333' => 'ach', 'Actinidia19334' => 'ach', 'Actinidia25552' => 'ach', 'Actinidia26089' => 'ach', 'Actinidia30615' => 'ach', 'Actinidia30616' => 'ach', 'Actinidia33083' => 'ach', 'Actinidia35762' => 'ach', 'Ah.02g110620' => 'amhyb', 'Ah.11g046390' => 'amhyb', 'AL1G31670' => 'aly', 'AL6G23730' => 'aly', 'AL7G14740' => 'aly', 'AL7G14750' => 'aly', 'AL7G14760' => 'aly', 'AL7G28220' => 'aly', 'AL8G24940' => 'aly', 'Aqoxy3G01665' => 'aox', 'Aqoxy3G02853' => 'aox', 'Aqoxy5G01513' => 'aox', 'Aqoxy5G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8SKA4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ75LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKDA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0LJZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7REX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZP4YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWX7I5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2QKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS0L9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPCD8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q161UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC7XCF' => 'arhy', 'AT1G19100' => 'ath', 'AT4G24970' => 'ath', 'AT4G36270' => 'ath', 'AT4G36280' => 'ath', 'AT4G36290' => 'ath', 'AT5G13130' => 'ath', 'AT5G50780' => 'ath', 'ATR0582G266' => 'atr', 'ATR0661G195' => 'atr', 'ATR1152G031' => 'atr', 'Atru.chr11.2382' => 'acertr', 'Atru.chr12.2337' => 'acertr', 'Atru.chr3.744' => 'acertr', 'Atru.chr6.1870' => 'acertr', 'Atru.chr9.2515' => 'acertr', 'AUR62004120' => 'cqu', 'AUR62005667' => 'cqu', 'AUR62007634' => 'cqu', 'AUR62008186' => 'cqu', 'AUR62008187' => 'cqu', 'AUR62008188' => 'cqu', 'AUR62027954' => 'cqu', 'AUR62028766' => 'cqu', 'AUR62028767' => 'cqu', 'AUR62028768' => 'cqu', 'AUR62028886' => 'cqu', 'AUR62029563' => 'cqu', 'AUR62038832' => 'cqu', 'BcaB01g04149' => 'bca', 'BcaB03g12940' => 'bca', 'BcaB03g13090' => 'bca', 'BcaB03g14466' => 'bca', 'BcaB05g24035' => 'bca', 'BcaC01g06050' => 'bca', 'BcaC04g19148' => 'bca', 'BcaC04g20761' => 'bca', 'BcaC06g32845' => 'bca', 'BcaC07g41274' => 'bca', 'BcaC09g50827' => 'bca', 'BcaNung00741' => 'bca', 'BcaNung00742' => 'bca', 'BcaNung01859' => 'bca', 'BcaNung03985' => 'bca', 'BcaNung03989' => 'bca', 'BcaNung05661' => 'bca', 'BolC1t00257H' => 'bol', 'BolC1t01956H' => 'bol', 'BolC2t06534H' => 'bol', 'BolC3t14334H' => 'bol', 'BolC5t30451H' => 'bol', 'BolC7t45880H' => 'bol', 'BolC7t46586H' => 'bol', 'BolC8t49301H' => 'bol', 'BolC8t51837H' => 'bol', 'BolC9t56822H' => 'bol', 'BolC9t59235H' => 'bol', 'BraA01t00234Z' => 'bra', 'BraA01t01563Z' => 'bra', 'BraA02t05147Z' => 'bra', 'BraA03t10947Z' => 'bra', 'BraA03t14633Z' => 'bra', 'BraA08t35112Z' => 'bra', 'BraA09t41330Z' => 'bra', 'BraA10t44570Z' => 'bra', 'C01p02670' => 'bna', 'C01p20260' => 'bna', 'C02p05890' => 'bna', 'C03p19530' => 'bna', 'C05p17470' => 'bna', 'C07p53900' => 'bna', 'C07p61630' => 'bna', 'C08p16800' => 'bna', 'C08p42810' => 'bna', 'C09p39480' => 'bna', 'C09p63980' => 'bna', 'CAN.G1001.7' => 'can', 'CAN.G1034.55' => 'can', 'CAN.G143.7' => 'can', 'CAN.G3340.1' => 'can', 'CAN.G358.19' => 'can', 'CAN.G373.2' => 'can', 'CAN.G674.16' => 'can', 'CAN.G674.17' => 'can', 'CAN.G674.18' => 'can', 'CAN.G732.2' => 'can', 'CAN.G732.3' => 'can', 'CAN.G993.39' => 'can', 'CANSAT01G2052' => 'cansat', 'CANSAT80G0070' => 'cansat', 'CANSAT80G0483' => 'cansat', 'CANSAT80G0625' => 'cansat', 'CARHR019690' => 'chi', 'CARHR080280' => 'chi', 'CARHR152750' => 'chi', 'CARHR152760' => 'chi', 'CARHR152770' => 'chi', 'CARHR200340' => 'chi', 'CARHR232370' => 'chi', 'CARHR244670' => 'chi', 'CARHR244680' => 'chi', 'CARHR257520' => 'chi', 'Carub.0001s1872' => 'cru', 'Carub.0006s1130' => 'cru', 'Carub.0007s0396' => 'cru', 'Carub.0007s0397' => 'cru', 'Carub.0007s1608' => 'cru', 'Carub.0008s1068' => 'cru', 'Carub.0008s1077' => 'cru', 'Ca_16158_v3' => 'car', 'Ca_17571_v3' => 'car', 'Ca_21936_v3' => 'car', 'Ca_22350_v3' => 'car', 'CBR_g22445' => 'cbr', 'CBR_g26290' => 'cbr', 'Cc04_g09610' => 'ccan', 'Cc04_g12280' => 'ccan', 'Cc07_g10230' => 'ccan', 'CDE02G0093' => 'cde', 'CDE02G0701' => 'cde', 'CDE04G1050' => 'cde', 'CDE05G1833' => 'cde', 'CDE05G3058' => 'cde', 'CDE05G3380' => 'cde', 'CDE06G0536' => 'cde', 'Cfa006923' => 'cfa', 'Cfa009402' => 'cfa', 'Cfa018751' => 'cfa', 'Cfa019164' => 'cfa', 'Cfa022935' => 'cfa', 'Ciclev10019081m.g' => 'ccl', 'Ciclev10025076m.g' => 'ccl', 'Ciclev10030712m.g' => 'ccl', 'Ciclev10033760m.g' => 'ccl', 'CiPaw.05G105600' => 'cil', 'CiPaw.08G136700' => 'cil', 'CiPaw.11G003900' => 'cil', 'CiPaw.11G023700' => 'cil', 'CiPaw.12G003700' => 'cil', 'ClCG06G017100' => 'cla', 'ClCG06G018110' => 'cla', 'ClCG07G008800' => 'cla', 'ClCG07G015330' => 'cla', 'COL.COLO4_13698' => 'col', 'COL.COLO4_16659' => 'col', 'COL.COLO4_21986' => 'col', 'COL.COLO4_24049' => 'col', 'COL.COLO4_29061' => 'col', 'COL.COLO4_29075' => 'col', 'COL.COLO4_30094' => 'col', 'Cpa.g.c33689' => 'cpa', 'Cpa.g.sc108.39' => 'cpa', 'Cpa.g.sc108.41' => 'cpa', 'Cpa.g.sc1163.1' => 'cpa', 'Cpa.g.sc4.155' => 'cpa', 'Cpa.g.sc6.194' => 'cpa', 'CsaV3_1G000340' => 'csa', 'CsaV3_1G001400' => 'csa', 'CsaV3_4G002220' => 'csa', 'CsaV3_4G005370' => 'csa', 'CSS0007487' => 'camsi', 'CSS0008066' => 'camsi', 'CSS0009120' => 'camsi', 'CSS0015512' => 'camsi', 'CSS0022409' => 'camsi', 'CSS0025358' => 'camsi', 'CSS0044547' => 'camsi', 'DCAR_013057' => 'dca', 'DCAR_015058' => 'dca', 'DCAR_016027' => 'dca', 'DCAR_017327' => 'dca', 'DCAR_020743' => 'dca', 'DCAR_026157' => 'dca', 'DCAR_032339' => 'dca', 'DCAR_032340' => 'dca', 'Dinv11200' => 'din', 'Dinv11201' => 'din', 'Dinv20631' => 'din', 'Dinv23182' => 'din', 'Dinv33466' => 'din', 'Dinv33583' => 'din', 'Dinv38565' => 'din', 'Duzib068G0200' => 'dzi', 'Duzib147G0132' => 'dzi', 'Duzib147G0635' => 'dzi', 'Duzib205G1670' => 'dzi', 'Duzib251G0606' => 'dzi', 'ECA232G3336' => 'eca', 'ECA232G3763' => 'eca', 'ECA232G4845' => 'eca', 'ECA234G1607' => 'eca', 'ECA246G0932' => 'eca', 'ECA247G0781' => 'eca', 'ECA247G1932' => 'eca', 'ECA247G2079' => 'eca', 'ECA247G3338' => 'eca', 'ECA247G4115' => 'eca', 'EL10Ac3g06552' => 'bvu', 'EL10Ac5g10721' => 'bvu', 'EL10Ac5g10722' => 'bvu', 'EL10Ac5g10723' => 'bvu', 'EL10Ac5g11361' => 'bvu', 'EL10Ac6g13553' => 'bvu', 'EL10As8g23872' => 'bvu', 'Eucgr.B00250' => 'egr', 'Eucgr.B00251' => 'egr', 'Eucgr.B03533' => 'egr', 'Eucgr.I02381' => 'egr', 'Eucgr.K02700' => 'egr', 'FAN02G0174' => 'fan', 'FAN02G3146' => 'fan', 'FAN04G1672' => 'fan', 'FAN04G2273' => 'fan', 'FAN05G2791' => 'fan', 'FAN05G4035' => 'fan', 'FAN07G0834' => 'fan', 'FAN08G1198' => 'fan', 'FAN09G4182' => 'fan', 'FAN12G0496' => 'fan', 'FAN13G1027' => 'fan', 'FAN13G2951' => 'fan', 'FAN14G0705' => 'fan', 'FAN14G0720' => 'fan', 'FAN17G0201' => 'fan', 'FAN17G2665' => 'fan', 'FAN18G1456' => 'fan', 'FAN18G1525' => 'fan', 'FAN18G3500' => 'fan', 'FAN28G2670' => 'fan', 'FvH4_1g12391' => 'fve', 'FvH4_4g23220' => 'fve', 'FvH4_5g08810' => 'fve', 'FvH4_5g28960' => 'fve', 'FvH4_6g42820' => 'fve', 'FvH4_6g51110' => 'fve', 'Glyma.02G051802' => 'gma', 'Glyma.04G185300' => 'gma', 'Glyma.05G202900' => 'gma', 'Glyma.08G010300' => 'gma', 'Glyma.16G131900' => 'gma', 'Glyma.17G087900' => 'gma', 'Gohir.A07G048600' => 'ghi', 'Gohir.A11G179000' => 'ghi', 'Gohir.A12G140900' => 'ghi', 'Gohir.A12G140950' => 'ghi', 'Gohir.A12G191700' => 'ghi', 'Gohir.A13G086300' => 'ghi', 'Gohir.D07G052900' => 'ghi', 'Gohir.D11G186600' => 'ghi', 'Gohir.D12G145575' => 'ghi', 'Gohir.D12G145650' => 'ghi', 'Gohir.D12G145725' => 'ghi', 'Gohir.D12G194050' => 'ghi', 'Gohir.D13G091800' => 'ghi', 'Gorai.001G055900' => 'gra', 'Gorai.007G198400' => 'gra', 'Gorai.008G157000' => 'gra', 'Gorai.008G157100' => 'gra', 'Gorai.008G208700' => 'gra', 'Gorai.010G138700' => 'gra', 'GSVIVG01000977001' => 'vvi', 'GSVIVG01007708001' => 'vvi', 'GSVIVG01008587001' => 'vvi', 'GSVIVG01018849001' => 'vvi', 'GSVIVG01032432001' => 'vvi', 'HanXRQChr02g0034131' => 'han', 'HanXRQChr02g0035981' => 'han', 'HanXRQChr02g0035991' => 'han', 'HanXRQChr05g0155611' => 'han', 'HanXRQChr05g0155621' => 'han', 'HanXRQChr08g0236501' => 'han', 'HanXRQChr09g0261321' => 'han', 'HanXRQChr09g0272081' => 'han', 'HanXRQChr10g0310741' => 'han', 'HanXRQChr11g0325591' => 'han', 'HanXRQChr12g0385691' => 'han', 'HanXRQChr13g0387801' => 'han', 'HanXRQChr15g0463011' => 'han', 'Haze_03826' => 'cav', 'Haze_03827' => 'cav', 'Haze_07183' => 'cav', 'Haze_07537' => 'cav', 'Haze_07539' => 'cav', 'Haze_12461' => 'cav', 'Haze_16115' => 'cav', 'Haze_16808' => 'cav', 'Haze_18531' => 'cav', 'Hma1.2p1_0046F.1_g026700' => 'hma', 'Hma1.2p1_0046F.1_g026710' => 'hma', 'Hma1.2p1_0168F.1_g074340' => 'hma', 'Hma1.2p1_0266F.1_g107030' => 'hma', 'Hma1.2p1_0266F.1_g107060' => 'hma', 'Hma1.2p1_0275F.1_g110510' => 'hma', 'Hma1.2p1_0592F.1_g185490' => 'hma', 'Hma1.2p1_0592F.1_g185500' => 'hma', 'Hma1.2p1_0592F.1_g185510' => 'hma', 'Hma1.2p1_0592F.1_g185520' => 'hma', 'Hma1.2p1_0592F.1_g185530' => 'hma', 'Hma1.2p1_0818F.1_g223450' => 'hma', 'HPP92_009708' => 'vpl', 'HPP92_009793' => 'vpl', 'HPP92_009796' => 'vpl', 'HPP92_009797' => 'vpl', 'HPP92_014940' => 'vpl', 'HPP92_014988' => 'vpl', 'Hund02463' => 'sun', 'Hund02760' => 'sun', 'Hund05071' => 'sun', 'Hund10108' => 'sun', 'Hund11204' => 'sun', 'Hund14016' => 'sun', 'Hund16464' => 'sun', 'Lalb_Chr09g0333391' => 'lal', 'Lalb_Chr11g0070461' => 'lal', 'Lalb_Chr12g0201671' => 'lal', 'Lalb_Chr13g0297161' => 'lal', 'Lj1g0002823' => 'lja', 'Lj3C1074T6' => 'lonja', 'Lj4A212T28' => 'lonja', 'Lj4g0005516' => 'lja', 'Lj4g0013705' => 'lja', 'Lj4g0027865' => 'lja', 'Lj5C92G16' => 'lonja', 'Lj5C92T12' => 'lonja', 'Lj7C596T3' => 'lonja', 'Lj9A446G59' => 'lonja', 'Lj9A482G21' => 'lonja', 'Lsat_1_v5_gn_1_28261' => 'lsa', 'Lsat_1_v5_gn_1_28281' => 'lsa', 'Lsat_1_v5_gn_1_32721' => 'lsa', 'Lsat_1_v5_gn_4_151760' => 'lsa', 'Lsat_1_v5_gn_4_2120' => 'lsa', 'Lsat_1_v5_gn_4_75761' => 'lsa', 'Lsat_1_v5_gn_5_10920' => 'lsa', 'Manes.02G099900' => 'mes', 'Manes.11G096200' => 'mes', 'Manes.12G007200' => 'mes', 'Manes.14G048300' => 'mes', 'Manes.17G114700' => 'mes', 'Mapoly0002s0070' => 'mpo', 'Mapoly0029s0099' => 'mpo', 'MBI07_g24742_MAGBIO' => 'mbi', 'MBI10_g27988_MAGBIO' => 'mbi', 'MBI11_g13057_MAGBIO' => 'mbi', 'MD02G1137200' => 'mdo', 'MD06G1137200' => 'mdo', 'MD07G1122300' => 'mdo', 'MD09G1078200' => 'mdo', 'MD13G1123700' => 'mdo', 'MD14G1151900' => 'mdo', 'MD17G1030900' => 'mdo', 'MD17G1068200' => 'mdo', 'MD17G1068600' => 'mdo', 'Medtr3g077540' => 'mtr', 'Medtr4g105530' => 'mtr', 'Medtr8g076580' => 'mtr', 'Medtr8g076590' => 'mtr', 'Medtr8g096410' => 'mtr', 'MELO3C016411.2' => 'cme', 'MELO3C017780.2' => 'cme', 'MELO3C022560.2' => 'cme', 'MELO3C026187.2' => 'cme', 'MELO3C026286.2' => 'cme', 'MELO3C032854.2' => 'cme', 'Migut.H02495' => 'egut', 'Migut.I00561' => 'egut', 'Migut.K01015' => 'egut', 'Migut.K01016' => 'egut', 'Migut.L00743' => 'egut', 'Migut.L00744' => 'egut', 'Migut.L00746' => 'egut', 'Migut.L00798' => 'egut', 'Migut.L00799' => 'egut', 'Migut.N02096' => 'egut', 'MSTRG.11259' => 'ama', 'MSTRG.23142' => 'ama', 'MSTRG.2499' => 'ama', 'Nitab4.5_0000003g0730' => 'nta', 'Nitab4.5_0000137g0020' => 'nta', 'Nitab4.5_0000721g0210' => 'nta', 'Nitab4.5_0000723g0050' => 'nta', 'Nitab4.5_0000913g0070' => 'nta', 'Nitab4.5_0001332g0040' => 'nta', 'Nitab4.5_0001771g0050' => 'nta', 'Nitab4.5_0001918g0050' => 'nta', 'Nitab4.5_0002686g0030' => 'nta', 'Nitab4.5_0003156g0020' => 'nta', 'Nitab4.5_0003383g0040' => 'nta', 'Nitab4.5_0003918g0010' => 'nta', 'Nitab4.5_0006760g0010' => 'nta', 'Nn1g05981' => 'nnu', 'Nn1g06288' => 'nnu', 'Nn3g16371' => 'nnu', 'Nn3g16786' => 'nnu', 'Nn4g22232' => 'nnu', 'Oeu005144.1' => 'oeu', 'Oeu005145.1' => 'oeu', 'Oeu011348.1' => 'oeu', 'Oeu016415.1' => 'oeu', 'Oeu023501.1' => 'oeu', 'Oeu044473.1' => 'oeu', 'Oeu048892.2' => 'oeu', 'Os01g0549200' => 'osa', 'Os02g0469300' => 'osa', 'Os04g0311100' => 'osa', 'Os06g0474900' => 'osa', 'Os10g0181700' => 'osa', 'Os11g0454800' => 'osa', 'Peaxi162Scf00037g00714' => 'pax', 'Peaxi162Scf00084g01217' => 'pax', 'Peaxi162Scf00257g00217' => 'pax', 'Peaxi162Scf00516g00215' => 'pax', 'Peaxi162Scf00689g00123' => 'pax', 'PGR044G2719' => 'pgr', 'PGR083G1360' => 'pgr', 'PGR102G2849' => 'pgr', 'PGR119G2534' => 'pgr', 'PGSC0003DMG400003538' => 'stu', 'PGSC0003DMG400028138' => 'stu', 'PGSC0003DMG400031732' => 'stu', 'PGSC0003DMG400038165' => 'stu', 'Phvul.002G284600' => 'pvu', 'Phvul.003G258200' => 'pvu', 'Phvul.009G176500' => 'pvu', 'Potri.003G167201' => 'ptr', 'Potri.005G118400' => 'ptr', 'Potri.012G089000' => 'ptr', 'Potri.012G102800' => 'ptr', 'Potri.015G079400' => 'ptr', 'Potri.015G100900' => 'ptr', 'Pp3c14_9810' => 'ppa', 'Pp3c15_10450' => 'ppa', 'Pp3c20_19150' => 'ppa', 'Pp3c23_12740' => 'ppa', 'Pp3c23_6310' => 'ppa', 'Pp3c24_3720' => 'ppa', 'Pp3c27_2580' => 'ppa', 'Pp3c9_8990' => 'ppa', 'PRCOL_00002854' => 'pco', 'Prupe.1G221200' => 'ppe', 'Prupe.3G289000' => 'ppe', 'Prupe.5G147000' => 'ppe', 'Prupe.6G157300' => 'ppe', 'Prupe.7G163400' => 'ppe', 'Psat0s2177g0040' => 'psa', 'Psat3g174760' => 'psa', 'Psat3g192160' => 'psa', 'Psat4g058520' => 'psa', 'Psat4g096840' => 'psa', 'Psat7g037320' => 'psa', 'PSO017G1274' => 'pso', 'PSO017G5166' => 'pso', 'PSO063G4558' => 'pso', 'PSO170G4458' => 'pso', 'PSO170G5005' => 'pso', 'PSO210G6156' => 'pso', 'PSO210G6635' => 'pso', 'PSO210G7397' => 'pso', 'PSO210G7700' => 'pso', 'PSO455G0035' => 'pso', 'PSO455G0180' => 'pso', 'PSO478G4515' => 'pso', 'PSO832G1305' => 'pso', 'PSO832G3489' => 'pso', 'QL02p075247' => 'qlo', 'QL03p051148' => 'qlo', 'QL05p010313' => 'qlo', 'QL06p034627' => 'qlo', 'QL10p001889' => 'qlo', 'QL10p010846' => 'qlo', 'RcHm_v2.0_Chr1g0350621' => 'rch', 'RcHm_v2.0_Chr1g0350641' => 'rch', 'RcHm_v2.0_Chr2g0092891' => 'rch', 'RcHm_v2.0_Chr2g0100251' => 'rch', 'RcHm_v2.0_Chr2g0158661' => 'rch', 'RcHm_v2.0_Chr2g0172741' => 'rch', 'RcHm_v2.0_Chr4g0429571' => 'rch', 'RcHm_v2.0_Chr5g0042471' => 'rch', 'RcHm_v2.0_Chr7g0189451' => 'rch', 'Rhsim08G0052000' => 'rsi', 'Rhsim08G0174400' => 'rsi', 'Rhsim08G0193200' => 'rsi', 'Rhsim10G0214800' => 'rsi', 'Rhsim10G0214900' => 'rsi', 'Rhsim10G0215000' => 'rsi', 'Rhsim12G0022900' => 'rsi', 'Rhsim12G0177500' => 'rsi', 'Rhsim12G0177700' => 'rsi', 'Sabra03G0122600' => 'sbr', 'Sabra05G0097400' => 'sbr', 'Sabra12G0064100' => 'sbr', 'Sabra15G0121300' => 'sbr', 'SalBow2G0642' => 'sbo', 'SalBow5G2667' => 'sbo', 'SalBow5G4873' => 'sbo', 'SalBow8G2395' => 'sbo', 'Sc03g0003290' => 'sci', 'Sc10g0010130' => 'sci', 'Sc22g0003650' => 'sci', 'Sed0001603' => 'sed', 'Sed0004259' => 'sed', 'Sed0006789' => 'sed', 'Sed0011838' => 'sed', 'Sed0012964' => 'sed', 'Sed0016383' => 'sed', 'Sed0019010' => 'sed', 'Sed0020188' => 'sed', 'SEGI_04702' => 'sgi', 'SEGI_17231' => 'sgi', 'SEGI_18877' => 'sgi', 'SEGI_25196' => 'sgi', 'SEGI_25515' => 'sgi', 'SEGI_28445' => 'sgi', 'SEGI_37452' => 'sgi', 'SGA_v2.0_scaffold188G40336' => 'sas', 'SGA_v2.0_scaffold228G43247' => 'sas', 'SGA_v2.0_scaffold280G46853' => 'sas', 'SGA_v2.0_scaffold34G13808' => 'sas', 'SGA_v2.0_scaffold40G15576' => 'sas', 'SGA_v2.0_scaffold611G53188' => 'sas', 'SGA_v2.0_scaffold78G25461' => 'sas', 'SGA_v2.0_scaffold90G27888' => 'sas', 'SHI08601' => 'shi', 'SHI08606' => 'shi', 'SHI17117' => 'shi', 'SHI17119' => 'shi', 'SMO118G0201' => 'smo', 'SMO169G0247' => 'smo', 'SMO176G0006' => 'smo', 'SMO176G0015' => 'smo', 'SMO202G0006' => 'smo', 'SMO240G0050' => 'smo', 'SMO286G0009' => 'smo', 'SMO338G0033' => 'smo', 'SMO356G0533' => 'smo', 'SMO364G0382' => 'smo', 'SMO367G0166' => 'smo', 'SMO367G1098' => 'smo', 'Solyc01g009920.3' => 'sly', 'Solyc01g099300.3' => 'sly', 'Solyc02g084700.3' => 'sly', 'Solyc03g097520.3' => 'sly', 'Solyc06g071580.3' => 'sly', 'Solyc10g081760.3' => 'sly', 'Sopen01g005480' => 'spe', 'Sopen01g042850' => 'spe', 'Sopen02g029370' => 'spe', 'Sopen03g028280' => 'spe', 'Sopen06g027870' => 'spe', 'Sopen10g032270' => 'spe', 'Sp5g18180' => 'spa', 'Sp6g12880' => 'spa', 'Sp6g30850' => 'spa', 'Sp7g22960' => 'spa', 'Sp7g34010' => 'spa', 'SpUn1326_0010' => 'spa', 'TAR371G0242' => 'tar', 'TAR622G0638' => 'tar', 'TAR628G1548' => 'tar', 'TAR629G1079' => 'tar', 'TAR629G3413' => 'tar', 'THA.LOC104804249' => 'tha', 'THA.LOC104808315' => 'tha', 'THA.LOC104809238' => 'tha', 'THA.LOC104825484' => 'tha', 'Thecc.01G025500' => 'tca', 'Thecc.03G015800' => 'tca', 'Thecc.03G018000' => 'tca', 'Thecc.03G134800' => 'tca', 'Thecc.04G014700' => 'tca', 'Thhalv10006991m.g' => 'esa', 'Thhalv10012707m.g' => 'esa', 'Thhalv10015739m.g' => 'esa', 'Thhalv10024553m.g' => 'esa', 'Thhalv10024673m.g' => 'esa', 'Thhalv10029187m.g' => 'esa', 'TPR.G12971' => 'tpr', 'TPR.G29396' => 'tpr', 'TPR.G33376' => 'tpr', 'TPR.G35508' => 'tpr', 'TPR.G35516' => 'tpr', 'TPR.G37317' => 'tpr', 'TPR.G37389' => 'tpr', 'TPR.G37523' => 'tpr', 'TPR.G559' => 'tpr', 'TWI14G0070' => 'twi', 'TWI14G0729' => 'twi', 'TWI18G0596' => 'twi', 'TWI39G0780' => 'twi', 'TWI39G0850' => 'twi', 'TWI73G1052' => 'twi', 'unitig_52.g17485' => 'ugi', 'unitig_61.g26355' => 'ugi', 'vmacro01040' => 'vma', 'vmacro16731' => 'vma', 'vmacro18270' => 'vma', 'vmacro19142' => 'vma', 'vmacro19407' => 'vma', 'vmacro19408' => 'vma', 'vmacro21899' => 'vma', 'vmacro21900' => 'vma', 'vmacro21901' => 'vma', 'VMungo0251G0490' => 'vmu', 'VMungo0251G1748' => 'vmu', 'VMungo1309G0421' => 'vmu', 'Zm00001eb086500' => 'zma', 'Zm00001eb150680' => 'zma', 'Zm00001eb162330' => 'zma', 'Zm00001eb203130' => 'zma', 'Zm00001eb369480' => 'zma', 'Zm00001eb382340' => 'zma', 'Zm00001eb416360' => 'zma' ), 'gf_id' => 'HOM05D000902', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000902' ), 'data_identifier' => 'HOM05D000902', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000902', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '663', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02470' => 'bna', 'A01p16260' => 'bna', 'A02p01680' => 'bna', 'A03p16600' => 'bna', 'A03p55660' => 'bna', 'A03p64160' => 'bna', 'A03p64170' => 'bna', 'A08p31900' => 'bna', 'A09p59530' => 'bna', 'A10p08230' => 'bna', 'A10p25090' => 'bna', 'Aa31LG3G7100' => 'aar', 'Aa31LG3G7110' => 'aar', 'Aa31LG6G13160' => 'aar', 'Aa31LG7G10770' => 'aar', 'Aa31LG7G3830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2723' => 'aag', 'Actinidia08045' => 'ach', 'Actinidia08888' => 'ach', 'Actinidia18333' => 'ach', 'Actinidia19334' => 'ach', 'Actinidia25552' => 'ach', 'Actinidia26089' => 'ach', 'Actinidia30615' => 'ach', 'Actinidia30616' => 'ach', 'Actinidia33083' => 'ach', 'Actinidia35762' => 'ach', 'Ah.02g110620' => 'amhyb', 'Ah.11g046390' => 'amhyb', 'AL1G31670' => 'aly', 'AL6G23730' => 'aly', 'AL7G14740' => 'aly', 'AL7G14750' => 'aly', 'AL7G14760' => 'aly', 'AL7G28220' => 'aly', 'AL8G24940' => 'aly', 'Aqoxy3G01665' => 'aox', 'Aqoxy3G02853' => 'aox', 'Aqoxy5G01513' => 'aox', 'Aqoxy5G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8SKA4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ75LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKDA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0LJZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7REX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZP4YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWX7I5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2QKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS0L9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPCD8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q161UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC7XCF' => 'arhy', 'AT1G19100' => 'ath', 'AT4G24970' => 'ath', 'AT4G36270' => 'ath', 'AT4G36280' => 'ath', 'AT4G36290' => 'ath', 'AT5G13130' => 'ath', 'AT5G50780' => 'ath', 'ATR0582G266' => 'atr', 'ATR0661G195' => 'atr', 'ATR1152G031' => 'atr', 'Atru.chr11.2382' => 'acertr', 'Atru.chr12.2337' => 'acertr', 'Atru.chr3.744' => 'acertr', 'Atru.chr6.1870' => 'acertr', 'Atru.chr9.2515' => 'acertr', 'AUR62004120' => 'cqu', 'AUR62005667' => 'cqu', 'AUR62007634' => 'cqu', 'AUR62008186' => 'cqu', 'AUR62008187' => 'cqu', 'AUR62008188' => 'cqu', 'AUR62027954' => 'cqu', 'AUR62028766' => 'cqu', 'AUR62028767' => 'cqu', 'AUR62028768' => 'cqu', 'AUR62028886' => 'cqu', 'AUR62029563' => 'cqu', 'AUR62038832' => 'cqu', 'BcaB01g04149' => 'bca', 'BcaB03g12940' => 'bca', 'BcaB03g13090' => 'bca', 'BcaB03g14466' => 'bca', 'BcaB05g24035' => 'bca', 'BcaC01g06050' => 'bca', 'BcaC04g19148' => 'bca', 'BcaC04g20761' => 'bca', 'BcaC06g32845' => 'bca', 'BcaC07g41274' => 'bca', 'BcaC09g50827' => 'bca', 'BcaNung00741' => 'bca', 'BcaNung00742' => 'bca', 'BcaNung01859' => 'bca', 'BcaNung03985' => 'bca', 'BcaNung03989' => 'bca', 'BcaNung05661' => 'bca', 'BolC1t00257H' => 'bol', 'BolC1t01956H' => 'bol', 'BolC2t06534H' => 'bol', 'BolC3t14334H' => 'bol', 'BolC5t30451H' => 'bol', 'BolC7t45880H' => 'bol', 'BolC7t46586H' => 'bol', 'BolC8t49301H' => 'bol', 'BolC8t51837H' => 'bol', 'BolC9t56822H' => 'bol', 'BolC9t59235H' => 'bol', 'BraA01t00234Z' => 'bra', 'BraA01t01563Z' => 'bra', 'BraA02t05147Z' => 'bra', 'BraA03t10947Z' => 'bra', 'BraA03t14633Z' => 'bra', 'BraA08t35112Z' => 'bra', 'BraA09t41330Z' => 'bra', 'BraA10t44570Z' => 'bra', 'C01p02670' => 'bna', 'C01p20260' => 'bna', 'C02p05890' => 'bna', 'C03p19530' => 'bna', 'C05p17470' => 'bna', 'C07p53900' => 'bna', 'C07p61630' => 'bna', 'C08p16800' => 'bna', 'C08p42810' => 'bna', 'C09p39480' => 'bna', 'C09p63980' => 'bna', 'CAN.G1001.7' => 'can', 'CAN.G1034.55' => 'can', 'CAN.G143.7' => 'can', 'CAN.G3340.1' => 'can', 'CAN.G358.19' => 'can', 'CAN.G373.2' => 'can', 'CAN.G674.16' => 'can', 'CAN.G674.17' => 'can', 'CAN.G674.18' => 'can', 'CAN.G732.2' => 'can', 'CAN.G732.3' => 'can', 'CAN.G993.39' => 'can', 'CANSAT01G2052' => 'cansat', 'CANSAT80G0070' => 'cansat', 'CANSAT80G0483' => 'cansat', 'CANSAT80G0625' => 'cansat', 'CARHR019690' => 'chi', 'CARHR080280' => 'chi', 'CARHR152750' => 'chi', 'CARHR152760' => 'chi', 'CARHR152770' => 'chi', 'CARHR200340' => 'chi', 'CARHR232370' => 'chi', 'CARHR244670' => 'chi', 'CARHR244680' => 'chi', 'CARHR257520' => 'chi', 'Carub.0001s1872' => 'cru', 'Carub.0006s1130' => 'cru', 'Carub.0007s0396' => 'cru', 'Carub.0007s0397' => 'cru', 'Carub.0007s1608' => 'cru', 'Carub.0008s1068' => 'cru', 'Carub.0008s1077' => 'cru', 'Ca_16158_v3' => 'car', 'Ca_17571_v3' => 'car', 'Ca_21936_v3' => 'car', 'Ca_22350_v3' => 'car', 'CBR_g22445' => 'cbr', 'CBR_g26290' => 'cbr', 'Cc04_g09610' => 'ccan', 'Cc04_g12280' => 'ccan', 'Cc07_g10230' => 'ccan', 'CDE02G0093' => 'cde', 'CDE02G0701' => 'cde', 'CDE04G1050' => 'cde', 'CDE05G1833' => 'cde', 'CDE05G3058' => 'cde', 'CDE05G3380' => 'cde', 'CDE06G0536' => 'cde', 'Cfa006923' => 'cfa', 'Cfa009402' => 'cfa', 'Cfa018751' => 'cfa', 'Cfa019164' => 'cfa', 'Cfa022935' => 'cfa', 'Ciclev10019081m.g' => 'ccl', 'Ciclev10025076m.g' => 'ccl', 'Ciclev10030712m.g' => 'ccl', 'Ciclev10033760m.g' => 'ccl', 'CiPaw.05G105600' => 'cil', 'CiPaw.08G136700' => 'cil', 'CiPaw.11G003900' => 'cil', 'CiPaw.11G023700' => 'cil', 'CiPaw.12G003700' => 'cil', 'ClCG06G017100' => 'cla', 'ClCG06G018110' => 'cla', 'ClCG07G008800' => 'cla', 'ClCG07G015330' => 'cla', 'COL.COLO4_13698' => 'col', 'COL.COLO4_16659' => 'col', 'COL.COLO4_21986' => 'col', 'COL.COLO4_24049' => 'col', 'COL.COLO4_29061' => 'col', 'COL.COLO4_29075' => 'col', 'COL.COLO4_30094' => 'col', 'Cpa.g.c33689' => 'cpa', 'Cpa.g.sc108.39' => 'cpa', 'Cpa.g.sc108.41' => 'cpa', 'Cpa.g.sc1163.1' => 'cpa', 'Cpa.g.sc4.155' => 'cpa', 'Cpa.g.sc6.194' => 'cpa', 'CsaV3_1G000340' => 'csa', 'CsaV3_1G001400' => 'csa', 'CsaV3_4G002220' => 'csa', 'CsaV3_4G005370' => 'csa', 'CSS0007487' => 'camsi', 'CSS0008066' => 'camsi', 'CSS0009120' => 'camsi', 'CSS0015512' => 'camsi', 'CSS0022409' => 'camsi', 'CSS0025358' => 'camsi', 'CSS0044547' => 'camsi', 'DCAR_013057' => 'dca', 'DCAR_015058' => 'dca', 'DCAR_016027' => 'dca', 'DCAR_017327' => 'dca', 'DCAR_020743' => 'dca', 'DCAR_026157' => 'dca', 'DCAR_032339' => 'dca', 'DCAR_032340' => 'dca', 'Dinv11200' => 'din', 'Dinv11201' => 'din', 'Dinv20631' => 'din', 'Dinv23182' => 'din', 'Dinv33466' => 'din', 'Dinv33583' => 'din', 'Dinv38565' => 'din', 'Duzib068G0200' => 'dzi', 'Duzib147G0132' => 'dzi', 'Duzib147G0635' => 'dzi', 'Duzib205G1670' => 'dzi', 'Duzib251G0606' => 'dzi', 'ECA232G3336' => 'eca', 'ECA232G3763' => 'eca', 'ECA232G4845' => 'eca', 'ECA234G1607' => 'eca', 'ECA246G0932' => 'eca', 'ECA247G0781' => 'eca', 'ECA247G1932' => 'eca', 'ECA247G2079' => 'eca', 'ECA247G3338' => 'eca', 'ECA247G4115' => 'eca', 'EL10Ac3g06552' => 'bvu', 'EL10Ac5g10721' => 'bvu', 'EL10Ac5g10722' => 'bvu', 'EL10Ac5g10723' => 'bvu', 'EL10Ac5g11361' => 'bvu', 'EL10Ac6g13553' => 'bvu', 'EL10As8g23872' => 'bvu', 'Eucgr.B00250' => 'egr', 'Eucgr.B00251' => 'egr', 'Eucgr.B03533' => 'egr', 'Eucgr.I02381' => 'egr', 'Eucgr.K02700' => 'egr', 'FAN02G0174' => 'fan', 'FAN02G3146' => 'fan', 'FAN04G1672' => 'fan', 'FAN04G2273' => 'fan', 'FAN05G2791' => 'fan', 'FAN05G4035' => 'fan', 'FAN07G0834' => 'fan', 'FAN08G1198' => 'fan', 'FAN09G4182' => 'fan', 'FAN12G0496' => 'fan', 'FAN13G1027' => 'fan', 'FAN13G2951' => 'fan', 'FAN14G0705' => 'fan', 'FAN14G0720' => 'fan', 'FAN17G0201' => 'fan', 'FAN17G2665' => 'fan', 'FAN18G1456' => 'fan', 'FAN18G1525' => 'fan', 'FAN18G3500' => 'fan', 'FAN28G2670' => 'fan', 'FvH4_1g12391' => 'fve', 'FvH4_4g23220' => 'fve', 'FvH4_5g08810' => 'fve', 'FvH4_5g28960' => 'fve', 'FvH4_6g42820' => 'fve', 'FvH4_6g51110' => 'fve', 'Glyma.02G051802' => 'gma', 'Glyma.04G185300' => 'gma', 'Glyma.05G202900' => 'gma', 'Glyma.08G010300' => 'gma', 'Glyma.16G131900' => 'gma', 'Glyma.17G087900' => 'gma', 'Gohir.A07G048600' => 'ghi', 'Gohir.A11G179000' => 'ghi', 'Gohir.A12G140900' => 'ghi', 'Gohir.A12G140950' => 'ghi', 'Gohir.A12G191700' => 'ghi', 'Gohir.A13G086300' => 'ghi', 'Gohir.D07G052900' => 'ghi', 'Gohir.D11G186600' => 'ghi', 'Gohir.D12G145575' => 'ghi', 'Gohir.D12G145650' => 'ghi', 'Gohir.D12G145725' => 'ghi', 'Gohir.D12G194050' => 'ghi', 'Gohir.D13G091800' => 'ghi', 'Gorai.001G055900' => 'gra', 'Gorai.007G198400' => 'gra', 'Gorai.008G157000' => 'gra', 'Gorai.008G157100' => 'gra', 'Gorai.008G208700' => 'gra', 'Gorai.010G138700' => 'gra', 'GSVIVG01000977001' => 'vvi', 'GSVIVG01007708001' => 'vvi', 'GSVIVG01008587001' => 'vvi', 'GSVIVG01018849001' => 'vvi', 'GSVIVG01032432001' => 'vvi', 'HanXRQChr02g0034131' => 'han', 'HanXRQChr02g0035981' => 'han', 'HanXRQChr02g0035991' => 'han', 'HanXRQChr05g0155611' => 'han', 'HanXRQChr05g0155621' => 'han', 'HanXRQChr08g0236501' => 'han', 'HanXRQChr09g0261321' => 'han', 'HanXRQChr09g0272081' => 'han', 'HanXRQChr10g0310741' => 'han', 'HanXRQChr11g0325591' => 'han', 'HanXRQChr12g0385691' => 'han', 'HanXRQChr13g0387801' => 'han', 'HanXRQChr15g0463011' => 'han', 'Haze_03826' => 'cav', 'Haze_03827' => 'cav', 'Haze_07183' => 'cav', 'Haze_07537' => 'cav', 'Haze_07539' => 'cav', 'Haze_12461' => 'cav', 'Haze_16115' => 'cav', 'Haze_16808' => 'cav', 'Haze_18531' => 'cav', 'Hma1.2p1_0046F.1_g026700' => 'hma', 'Hma1.2p1_0046F.1_g026710' => 'hma', 'Hma1.2p1_0168F.1_g074340' => 'hma', 'Hma1.2p1_0266F.1_g107030' => 'hma', 'Hma1.2p1_0266F.1_g107060' => 'hma', 'Hma1.2p1_0275F.1_g110510' => 'hma', 'Hma1.2p1_0592F.1_g185490' => 'hma', 'Hma1.2p1_0592F.1_g185500' => 'hma', 'Hma1.2p1_0592F.1_g185510' => 'hma', 'Hma1.2p1_0592F.1_g185520' => 'hma', 'Hma1.2p1_0592F.1_g185530' => 'hma', 'Hma1.2p1_0818F.1_g223450' => 'hma', 'HPP92_009708' => 'vpl', 'HPP92_009793' => 'vpl', 'HPP92_009796' => 'vpl', 'HPP92_009797' => 'vpl', 'HPP92_014940' => 'vpl', 'HPP92_014988' => 'vpl', 'Hund02463' => 'sun', 'Hund02760' => 'sun', 'Hund05071' => 'sun', 'Hund10108' => 'sun', 'Hund11204' => 'sun', 'Hund14016' => 'sun', 'Hund16464' => 'sun', 'Lalb_Chr09g0333391' => 'lal', 'Lalb_Chr11g0070461' => 'lal', 'Lalb_Chr12g0201671' => 'lal', 'Lalb_Chr13g0297161' => 'lal', 'Lj1g0002823' => 'lja', 'Lj3C1074T6' => 'lonja', 'Lj4A212T28' => 'lonja', 'Lj4g0005516' => 'lja', 'Lj4g0013705' => 'lja', 'Lj4g0027865' => 'lja', 'Lj5C92G16' => 'lonja', 'Lj5C92T12' => 'lonja', 'Lj7C596T3' => 'lonja', 'Lj9A446G59' => 'lonja', 'Lj9A482G21' => 'lonja', 'Lsat_1_v5_gn_1_28261' => 'lsa', 'Lsat_1_v5_gn_1_28281' => 'lsa', 'Lsat_1_v5_gn_1_32721' => 'lsa', 'Lsat_1_v5_gn_4_151760' => 'lsa', 'Lsat_1_v5_gn_4_2120' => 'lsa', 'Lsat_1_v5_gn_4_75761' => 'lsa', 'Lsat_1_v5_gn_5_10920' => 'lsa', 'Manes.02G099900' => 'mes', 'Manes.11G096200' => 'mes', 'Manes.12G007200' => 'mes', 'Manes.14G048300' => 'mes', 'Manes.17G114700' => 'mes', 'Mapoly0002s0070' => 'mpo', 'Mapoly0029s0099' => 'mpo', 'MBI07_g24742_MAGBIO' => 'mbi', 'MBI10_g27988_MAGBIO' => 'mbi', 'MBI11_g13057_MAGBIO' => 'mbi', 'MD02G1137200' => 'mdo', 'MD06G1137200' => 'mdo', 'MD07G1122300' => 'mdo', 'MD09G1078200' => 'mdo', 'MD13G1123700' => 'mdo', 'MD14G1151900' => 'mdo', 'MD17G1030900' => 'mdo', 'MD17G1068200' => 'mdo', 'MD17G1068600' => 'mdo', 'Medtr3g077540' => 'mtr', 'Medtr4g105530' => 'mtr', 'Medtr8g076580' => 'mtr', 'Medtr8g076590' => 'mtr', 'Medtr8g096410' => 'mtr', 'MELO3C016411.2' => 'cme', 'MELO3C017780.2' => 'cme', 'MELO3C022560.2' => 'cme', 'MELO3C026187.2' => 'cme', 'MELO3C026286.2' => 'cme', 'MELO3C032854.2' => 'cme', 'Migut.H02495' => 'egut', 'Migut.I00561' => 'egut', 'Migut.K01015' => 'egut', 'Migut.K01016' => 'egut', 'Migut.L00743' => 'egut', 'Migut.L00744' => 'egut', 'Migut.L00746' => 'egut', 'Migut.L00798' => 'egut', 'Migut.L00799' => 'egut', 'Migut.N02096' => 'egut', 'MSTRG.11259' => 'ama', 'MSTRG.23142' => 'ama', 'MSTRG.2499' => 'ama', 'Nitab4.5_0000003g0730' => 'nta', 'Nitab4.5_0000137g0020' => 'nta', 'Nitab4.5_0000721g0210' => 'nta', 'Nitab4.5_0000723g0050' => 'nta', 'Nitab4.5_0000913g0070' => 'nta', 'Nitab4.5_0001332g0040' => 'nta', 'Nitab4.5_0001771g0050' => 'nta', 'Nitab4.5_0001918g0050' => 'nta', 'Nitab4.5_0002686g0030' => 'nta', 'Nitab4.5_0003156g0020' => 'nta', 'Nitab4.5_0003383g0040' => 'nta', 'Nitab4.5_0003918g0010' => 'nta', 'Nitab4.5_0006760g0010' => 'nta', 'Nn1g05981' => 'nnu', 'Nn1g06288' => 'nnu', 'Nn3g16371' => 'nnu', 'Nn3g16786' => 'nnu', 'Nn4g22232' => 'nnu', 'Oeu005144.1' => 'oeu', 'Oeu005145.1' => 'oeu', 'Oeu011348.1' => 'oeu', 'Oeu016415.1' => 'oeu', 'Oeu023501.1' => 'oeu', 'Oeu044473.1' => 'oeu', 'Oeu048892.2' => 'oeu', 'Os01g0549200' => 'osa', 'Os02g0469300' => 'osa', 'Os04g0311100' => 'osa', 'Os06g0474900' => 'osa', 'Os10g0181700' => 'osa', 'Os11g0454800' => 'osa', 'Peaxi162Scf00037g00714' => 'pax', 'Peaxi162Scf00084g01217' => 'pax', 'Peaxi162Scf00257g00217' => 'pax', 'Peaxi162Scf00516g00215' => 'pax', 'Peaxi162Scf00689g00123' => 'pax', 'PGR044G2719' => 'pgr', 'PGR083G1360' => 'pgr', 'PGR102G2849' => 'pgr', 'PGR119G2534' => 'pgr', 'PGSC0003DMG400003538' => 'stu', 'PGSC0003DMG400028138' => 'stu', 'PGSC0003DMG400031732' => 'stu', 'PGSC0003DMG400038165' => 'stu', 'Phvul.002G284600' => 'pvu', 'Phvul.003G258200' => 'pvu', 'Phvul.009G176500' => 'pvu', 'Potri.003G167201' => 'ptr', 'Potri.005G118400' => 'ptr', 'Potri.012G089000' => 'ptr', 'Potri.012G102800' => 'ptr', 'Potri.015G079400' => 'ptr', 'Potri.015G100900' => 'ptr', 'Pp3c14_9810' => 'ppa', 'Pp3c15_10450' => 'ppa', 'Pp3c20_19150' => 'ppa', 'Pp3c23_12740' => 'ppa', 'Pp3c23_6310' => 'ppa', 'Pp3c24_3720' => 'ppa', 'Pp3c27_2580' => 'ppa', 'Pp3c9_8990' => 'ppa', 'PRCOL_00002854' => 'pco', 'Prupe.1G221200' => 'ppe', 'Prupe.3G289000' => 'ppe', 'Prupe.5G147000' => 'ppe', 'Prupe.6G157300' => 'ppe', 'Prupe.7G163400' => 'ppe', 'Psat0s2177g0040' => 'psa', 'Psat3g174760' => 'psa', 'Psat3g192160' => 'psa', 'Psat4g058520' => 'psa', 'Psat4g096840' => 'psa', 'Psat7g037320' => 'psa', 'PSO017G1274' => 'pso', 'PSO017G5166' => 'pso', 'PSO063G4558' => 'pso', 'PSO170G4458' => 'pso', 'PSO170G5005' => 'pso', 'PSO210G6156' => 'pso', 'PSO210G6635' => 'pso', 'PSO210G7397' => 'pso', 'PSO210G7700' => 'pso', 'PSO455G0035' => 'pso', 'PSO455G0180' => 'pso', 'PSO478G4515' => 'pso', 'PSO832G1305' => 'pso', 'PSO832G3489' => 'pso', 'QL02p075247' => 'qlo', 'QL03p051148' => 'qlo', 'QL05p010313' => 'qlo', 'QL06p034627' => 'qlo', 'QL10p001889' => 'qlo', 'QL10p010846' => 'qlo', 'RcHm_v2.0_Chr1g0350621' => 'rch', 'RcHm_v2.0_Chr1g0350641' => 'rch', 'RcHm_v2.0_Chr2g0092891' => 'rch', 'RcHm_v2.0_Chr2g0100251' => 'rch', 'RcHm_v2.0_Chr2g0158661' => 'rch', 'RcHm_v2.0_Chr2g0172741' => 'rch', 'RcHm_v2.0_Chr4g0429571' => 'rch', 'RcHm_v2.0_Chr5g0042471' => 'rch', 'RcHm_v2.0_Chr7g0189451' => 'rch', 'Rhsim08G0052000' => 'rsi', 'Rhsim08G0174400' => 'rsi', 'Rhsim08G0193200' => 'rsi', 'Rhsim10G0214800' => 'rsi', 'Rhsim10G0214900' => 'rsi', 'Rhsim10G0215000' => 'rsi', 'Rhsim12G0022900' => 'rsi', 'Rhsim12G0177500' => 'rsi', 'Rhsim12G0177700' => 'rsi', 'Sabra03G0122600' => 'sbr', 'Sabra05G0097400' => 'sbr', 'Sabra12G0064100' => 'sbr', 'Sabra15G0121300' => 'sbr', 'SalBow2G0642' => 'sbo', 'SalBow5G2667' => 'sbo', 'SalBow5G4873' => 'sbo', 'SalBow8G2395' => 'sbo', 'Sc03g0003290' => 'sci', 'Sc10g0010130' => 'sci', 'Sc22g0003650' => 'sci', 'Sed0001603' => 'sed', 'Sed0004259' => 'sed', 'Sed0006789' => 'sed', 'Sed0011838' => 'sed', 'Sed0012964' => 'sed', 'Sed0016383' => 'sed', 'Sed0019010' => 'sed', 'Sed0020188' => 'sed', 'SEGI_04702' => 'sgi', 'SEGI_17231' => 'sgi', 'SEGI_18877' => 'sgi', 'SEGI_25196' => 'sgi', 'SEGI_25515' => 'sgi', 'SEGI_28445' => 'sgi', 'SEGI_37452' => 'sgi', 'SGA_v2.0_scaffold188G40336' => 'sas', 'SGA_v2.0_scaffold228G43247' => 'sas', 'SGA_v2.0_scaffold280G46853' => 'sas', 'SGA_v2.0_scaffold34G13808' => 'sas', 'SGA_v2.0_scaffold40G15576' => 'sas', 'SGA_v2.0_scaffold611G53188' => 'sas', 'SGA_v2.0_scaffold78G25461' => 'sas', 'SGA_v2.0_scaffold90G27888' => 'sas', 'SHI08601' => 'shi', 'SHI08606' => 'shi', 'SHI17117' => 'shi', 'SHI17119' => 'shi', 'SMO118G0201' => 'smo', 'SMO169G0247' => 'smo', 'SMO176G0006' => 'smo', 'SMO176G0015' => 'smo', 'SMO202G0006' => 'smo', 'SMO240G0050' => 'smo', 'SMO286G0009' => 'smo', 'SMO338G0033' => 'smo', 'SMO356G0533' => 'smo', 'SMO364G0382' => 'smo', 'SMO367G0166' => 'smo', 'SMO367G1098' => 'smo', 'Solyc01g009920.3' => 'sly', 'Solyc01g099300.3' => 'sly', 'Solyc02g084700.3' => 'sly', 'Solyc03g097520.3' => 'sly', 'Solyc06g071580.3' => 'sly', 'Solyc10g081760.3' => 'sly', 'Sopen01g005480' => 'spe', 'Sopen01g042850' => 'spe', 'Sopen02g029370' => 'spe', 'Sopen03g028280' => 'spe', 'Sopen06g027870' => 'spe', 'Sopen10g032270' => 'spe', 'Sp5g18180' => 'spa', 'Sp6g12880' => 'spa', 'Sp6g30850' => 'spa', 'Sp7g22960' => 'spa', 'Sp7g34010' => 'spa', 'SpUn1326_0010' => 'spa', 'TAR371G0242' => 'tar', 'TAR622G0638' => 'tar', 'TAR628G1548' => 'tar', 'TAR629G1079' => 'tar', 'TAR629G3413' => 'tar', 'THA.LOC104804249' => 'tha', 'THA.LOC104808315' => 'tha', 'THA.LOC104809238' => 'tha', 'THA.LOC104825484' => 'tha', 'Thecc.01G025500' => 'tca', 'Thecc.03G015800' => 'tca', 'Thecc.03G018000' => 'tca', 'Thecc.03G134800' => 'tca', 'Thecc.04G014700' => 'tca', 'Thhalv10006991m.g' => 'esa', 'Thhalv10012707m.g' => 'esa', 'Thhalv10015739m.g' => 'esa', 'Thhalv10024553m.g' => 'esa', 'Thhalv10024673m.g' => 'esa', 'Thhalv10029187m.g' => 'esa', 'TPR.G12971' => 'tpr', 'TPR.G29396' => 'tpr', 'TPR.G33376' => 'tpr', 'TPR.G35508' => 'tpr', 'TPR.G35516' => 'tpr', 'TPR.G37317' => 'tpr', 'TPR.G37389' => 'tpr', 'TPR.G37523' => 'tpr', 'TPR.G559' => 'tpr', 'TWI14G0070' => 'twi', 'TWI14G0729' => 'twi', 'TWI18G0596' => 'twi', 'TWI39G0780' => 'twi', 'TWI39G0850' => 'twi', 'TWI73G1052' => 'twi', 'unitig_52.g17485' => 'ugi', 'unitig_61.g26355' => 'ugi', 'vmacro01040' => 'vma', 'vmacro16731' => 'vma', 'vmacro18270' => 'vma', 'vmacro19142' => 'vma', 'vmacro19407' => 'vma', 'vmacro19408' => 'vma', 'vmacro21899' => 'vma', 'vmacro21900' => 'vma', 'vmacro21901' => 'vma', 'VMungo0251G0490' => 'vmu', 'VMungo0251G1748' => 'vmu', 'VMungo1309G0421' => 'vmu', 'Zm00001eb086500' => 'zma', 'Zm00001eb150680' => 'zma', 'Zm00001eb162330' => 'zma', 'Zm00001eb203130' => 'zma', 'Zm00001eb369480' => 'zma', 'Zm00001eb382340' => 'zma', 'Zm00001eb416360' => 'zma' ) $gf_id = 'HOM05D000902' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000902' ) $data_identifier = 'HOM05D000902' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 13, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 10, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 6, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 9, 'hma' => (int) 12, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 4, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 6, 'ppa' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 6, 'rch' => (int) 9, 'rsi' => (int) 9, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 12, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 3, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416360' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000902', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '663', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02470' => 'bna', 'A01p16260' => 'bna', 'A02p01680' => 'bna', 'A03p16600' => 'bna', 'A03p55660' => 'bna', 'A03p64160' => 'bna', 'A03p64170' => 'bna', 'A08p31900' => 'bna', 'A09p59530' => 'bna', 'A10p08230' => 'bna', 'A10p25090' => 'bna', 'Aa31LG3G7100' => 'aar', 'Aa31LG3G7110' => 'aar', 'Aa31LG6G13160' => 'aar', 'Aa31LG7G10770' => 'aar', 'Aa31LG7G3830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2723' => 'aag', 'Actinidia08045' => 'ach', 'Actinidia08888' => 'ach', 'Actinidia18333' => 'ach', 'Actinidia19334' => 'ach', 'Actinidia25552' => 'ach', 'Actinidia26089' => 'ach', 'Actinidia30615' => 'ach', 'Actinidia30616' => 'ach', 'Actinidia33083' => 'ach', 'Actinidia35762' => 'ach', 'Ah.02g110620' => 'amhyb', 'Ah.11g046390' => 'amhyb', 'AL1G31670' => 'aly', 'AL6G23730' => 'aly', 'AL7G14740' => 'aly', 'AL7G14750' => 'aly', 'AL7G14760' => 'aly', 'AL7G28220' => 'aly', 'AL8G24940' => 'aly', 'Aqoxy3G01665' => 'aox', 'Aqoxy3G02853' => 'aox', 'Aqoxy5G01513' => 'aox', 'Aqoxy5G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8SKA4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ75LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKDA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0LJZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7REX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZP4YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWX7I5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2QKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS0L9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPCD8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q161UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC7XCF' => 'arhy', 'AT1G19100' => 'ath', 'AT4G24970' => 'ath', 'AT4G36270' => 'ath', 'AT4G36280' => 'ath', 'AT4G36290' => 'ath', 'AT5G13130' => 'ath', 'AT5G50780' => 'ath', 'ATR0582G266' => 'atr', 'ATR0661G195' => 'atr', 'ATR1152G031' => 'atr', 'Atru.chr11.2382' => 'acertr', 'Atru.chr12.2337' => 'acertr', 'Atru.chr3.744' => 'acertr', 'Atru.chr6.1870' => 'acertr', 'Atru.chr9.2515' => 'acertr', 'AUR62004120' => 'cqu', 'AUR62005667' => 'cqu', 'AUR62007634' => 'cqu', 'AUR62008186' => 'cqu', 'AUR62008187' => 'cqu', 'AUR62008188' => 'cqu', 'AUR62027954' => 'cqu', 'AUR62028766' => 'cqu', 'AUR62028767' => 'cqu', 'AUR62028768' => 'cqu', 'AUR62028886' => 'cqu', 'AUR62029563' => 'cqu', 'AUR62038832' => 'cqu', 'BcaB01g04149' => 'bca', 'BcaB03g12940' => 'bca', 'BcaB03g13090' => 'bca', 'BcaB03g14466' => 'bca', 'BcaB05g24035' => 'bca', 'BcaC01g06050' => 'bca', 'BcaC04g19148' => 'bca', 'BcaC04g20761' => 'bca', 'BcaC06g32845' => 'bca', 'BcaC07g41274' => 'bca', 'BcaC09g50827' => 'bca', 'BcaNung00741' => 'bca', 'BcaNung00742' => 'bca', 'BcaNung01859' => 'bca', 'BcaNung03985' => 'bca', 'BcaNung03989' => 'bca', 'BcaNung05661' => 'bca', 'BolC1t00257H' => 'bol', 'BolC1t01956H' => 'bol', 'BolC2t06534H' => 'bol', 'BolC3t14334H' => 'bol', 'BolC5t30451H' => 'bol', 'BolC7t45880H' => 'bol', 'BolC7t46586H' => 'bol', 'BolC8t49301H' => 'bol', 'BolC8t51837H' => 'bol', 'BolC9t56822H' => 'bol', 'BolC9t59235H' => 'bol', 'BraA01t00234Z' => 'bra', 'BraA01t01563Z' => 'bra', 'BraA02t05147Z' => 'bra', 'BraA03t10947Z' => 'bra', 'BraA03t14633Z' => 'bra', 'BraA08t35112Z' => 'bra', 'BraA09t41330Z' => 'bra', 'BraA10t44570Z' => 'bra', 'C01p02670' => 'bna', 'C01p20260' => 'bna', 'C02p05890' => 'bna', 'C03p19530' => 'bna', 'C05p17470' => 'bna', 'C07p53900' => 'bna', 'C07p61630' => 'bna', 'C08p16800' => 'bna', 'C08p42810' => 'bna', 'C09p39480' => 'bna', 'C09p63980' => 'bna', 'CAN.G1001.7' => 'can', 'CAN.G1034.55' => 'can', 'CAN.G143.7' => 'can', 'CAN.G3340.1' => 'can', 'CAN.G358.19' => 'can', 'CAN.G373.2' => 'can', 'CAN.G674.16' => 'can', 'CAN.G674.17' => 'can', 'CAN.G674.18' => 'can', 'CAN.G732.2' => 'can', 'CAN.G732.3' => 'can', 'CAN.G993.39' => 'can', 'CANSAT01G2052' => 'cansat', 'CANSAT80G0070' => 'cansat', 'CANSAT80G0483' => 'cansat', 'CANSAT80G0625' => 'cansat', 'CARHR019690' => 'chi', 'CARHR080280' => 'chi', 'CARHR152750' => 'chi', 'CARHR152760' => 'chi', 'CARHR152770' => 'chi', 'CARHR200340' => 'chi', 'CARHR232370' => 'chi', 'CARHR244670' => 'chi', 'CARHR244680' => 'chi', 'CARHR257520' => 'chi', 'Carub.0001s1872' => 'cru', 'Carub.0006s1130' => 'cru', 'Carub.0007s0396' => 'cru', 'Carub.0007s0397' => 'cru', 'Carub.0007s1608' => 'cru', 'Carub.0008s1068' => 'cru', 'Carub.0008s1077' => 'cru', 'Ca_16158_v3' => 'car', 'Ca_17571_v3' => 'car', 'Ca_21936_v3' => 'car', 'Ca_22350_v3' => 'car', 'CBR_g22445' => 'cbr', 'CBR_g26290' => 'cbr', 'Cc04_g09610' => 'ccan', 'Cc04_g12280' => 'ccan', 'Cc07_g10230' => 'ccan', 'CDE02G0093' => 'cde', 'CDE02G0701' => 'cde', 'CDE04G1050' => 'cde', 'CDE05G1833' => 'cde', 'CDE05G3058' => 'cde', 'CDE05G3380' => 'cde', 'CDE06G0536' => 'cde', 'Cfa006923' => 'cfa', 'Cfa009402' => 'cfa', 'Cfa018751' => 'cfa', 'Cfa019164' => 'cfa', 'Cfa022935' => 'cfa', 'Ciclev10019081m.g' => 'ccl', 'Ciclev10025076m.g' => 'ccl', 'Ciclev10030712m.g' => 'ccl', 'Ciclev10033760m.g' => 'ccl', 'CiPaw.05G105600' => 'cil', 'CiPaw.08G136700' => 'cil', 'CiPaw.11G003900' => 'cil', 'CiPaw.11G023700' => 'cil', 'CiPaw.12G003700' => 'cil', 'ClCG06G017100' => 'cla', 'ClCG06G018110' => 'cla', 'ClCG07G008800' => 'cla', 'ClCG07G015330' => 'cla', 'COL.COLO4_13698' => 'col', 'COL.COLO4_16659' => 'col', 'COL.COLO4_21986' => 'col', 'COL.COLO4_24049' => 'col', 'COL.COLO4_29061' => 'col', 'COL.COLO4_29075' => 'col', 'COL.COLO4_30094' => 'col', 'Cpa.g.c33689' => 'cpa', 'Cpa.g.sc108.39' => 'cpa', 'Cpa.g.sc108.41' => 'cpa', 'Cpa.g.sc1163.1' => 'cpa', 'Cpa.g.sc4.155' => 'cpa', 'Cpa.g.sc6.194' => 'cpa', 'CsaV3_1G000340' => 'csa', 'CsaV3_1G001400' => 'csa', 'CsaV3_4G002220' => 'csa', 'CsaV3_4G005370' => 'csa', 'CSS0007487' => 'camsi', 'CSS0008066' => 'camsi', 'CSS0009120' => 'camsi', 'CSS0015512' => 'camsi', 'CSS0022409' => 'camsi', 'CSS0025358' => 'camsi', 'CSS0044547' => 'camsi', 'DCAR_013057' => 'dca', 'DCAR_015058' => 'dca', 'DCAR_016027' => 'dca', 'DCAR_017327' => 'dca', 'DCAR_020743' => 'dca', 'DCAR_026157' => 'dca', 'DCAR_032339' => 'dca', 'DCAR_032340' => 'dca', 'Dinv11200' => 'din', 'Dinv11201' => 'din', 'Dinv20631' => 'din', 'Dinv23182' => 'din', 'Dinv33466' => 'din', 'Dinv33583' => 'din', 'Dinv38565' => 'din', 'Duzib068G0200' => 'dzi', 'Duzib147G0132' => 'dzi', 'Duzib147G0635' => 'dzi', 'Duzib205G1670' => 'dzi', 'Duzib251G0606' => 'dzi', 'ECA232G3336' => 'eca', 'ECA232G3763' => 'eca', 'ECA232G4845' => 'eca', 'ECA234G1607' => 'eca', 'ECA246G0932' => 'eca', 'ECA247G0781' => 'eca', 'ECA247G1932' => 'eca', 'ECA247G2079' => 'eca', 'ECA247G3338' => 'eca', 'ECA247G4115' => 'eca', 'EL10Ac3g06552' => 'bvu', 'EL10Ac5g10721' => 'bvu', 'EL10Ac5g10722' => 'bvu', 'EL10Ac5g10723' => 'bvu', 'EL10Ac5g11361' => 'bvu', 'EL10Ac6g13553' => 'bvu', 'EL10As8g23872' => 'bvu', 'Eucgr.B00250' => 'egr', 'Eucgr.B00251' => 'egr', 'Eucgr.B03533' => 'egr', 'Eucgr.I02381' => 'egr', 'Eucgr.K02700' => 'egr', 'FAN02G0174' => 'fan', 'FAN02G3146' => 'fan', 'FAN04G1672' => 'fan', 'FAN04G2273' => 'fan', 'FAN05G2791' => 'fan', 'FAN05G4035' => 'fan', 'FAN07G0834' => 'fan', 'FAN08G1198' => 'fan', 'FAN09G4182' => 'fan', 'FAN12G0496' => 'fan', 'FAN13G1027' => 'fan', 'FAN13G2951' => 'fan', 'FAN14G0705' => 'fan', 'FAN14G0720' => 'fan', 'FAN17G0201' => 'fan', 'FAN17G2665' => 'fan', 'FAN18G1456' => 'fan', 'FAN18G1525' => 'fan', 'FAN18G3500' => 'fan', 'FAN28G2670' => 'fan', 'FvH4_1g12391' => 'fve', 'FvH4_4g23220' => 'fve', 'FvH4_5g08810' => 'fve', 'FvH4_5g28960' => 'fve', 'FvH4_6g42820' => 'fve', 'FvH4_6g51110' => 'fve', 'Glyma.02G051802' => 'gma', 'Glyma.04G185300' => 'gma', 'Glyma.05G202900' => 'gma', 'Glyma.08G010300' => 'gma', 'Glyma.16G131900' => 'gma', 'Glyma.17G087900' => 'gma', 'Gohir.A07G048600' => 'ghi', 'Gohir.A11G179000' => 'ghi', 'Gohir.A12G140900' => 'ghi', 'Gohir.A12G140950' => 'ghi', 'Gohir.A12G191700' => 'ghi', 'Gohir.A13G086300' => 'ghi', 'Gohir.D07G052900' => 'ghi', 'Gohir.D11G186600' => 'ghi', 'Gohir.D12G145575' => 'ghi', 'Gohir.D12G145650' => 'ghi', 'Gohir.D12G145725' => 'ghi', 'Gohir.D12G194050' => 'ghi', 'Gohir.D13G091800' => 'ghi', 'Gorai.001G055900' => 'gra', 'Gorai.007G198400' => 'gra', 'Gorai.008G157000' => 'gra', 'Gorai.008G157100' => 'gra', 'Gorai.008G208700' => 'gra', 'Gorai.010G138700' => 'gra', 'GSVIVG01000977001' => 'vvi', 'GSVIVG01007708001' => 'vvi', 'GSVIVG01008587001' => 'vvi', 'GSVIVG01018849001' => 'vvi', 'GSVIVG01032432001' => 'vvi', 'HanXRQChr02g0034131' => 'han', 'HanXRQChr02g0035981' => 'han', 'HanXRQChr02g0035991' => 'han', 'HanXRQChr05g0155611' => 'han', 'HanXRQChr05g0155621' => 'han', 'HanXRQChr08g0236501' => 'han', 'HanXRQChr09g0261321' => 'han', 'HanXRQChr09g0272081' => 'han', 'HanXRQChr10g0310741' => 'han', 'HanXRQChr11g0325591' => 'han', 'HanXRQChr12g0385691' => 'han', 'HanXRQChr13g0387801' => 'han', 'HanXRQChr15g0463011' => 'han', 'Haze_03826' => 'cav', 'Haze_03827' => 'cav', 'Haze_07183' => 'cav', 'Haze_07537' => 'cav', 'Haze_07539' => 'cav', 'Haze_12461' => 'cav', 'Haze_16115' => 'cav', 'Haze_16808' => 'cav', 'Haze_18531' => 'cav', 'Hma1.2p1_0046F.1_g026700' => 'hma', 'Hma1.2p1_0046F.1_g026710' => 'hma', 'Hma1.2p1_0168F.1_g074340' => 'hma', 'Hma1.2p1_0266F.1_g107030' => 'hma', 'Hma1.2p1_0266F.1_g107060' => 'hma', 'Hma1.2p1_0275F.1_g110510' => 'hma', 'Hma1.2p1_0592F.1_g185490' => 'hma', 'Hma1.2p1_0592F.1_g185500' => 'hma', 'Hma1.2p1_0592F.1_g185510' => 'hma', 'Hma1.2p1_0592F.1_g185520' => 'hma', 'Hma1.2p1_0592F.1_g185530' => 'hma', 'Hma1.2p1_0818F.1_g223450' => 'hma', 'HPP92_009708' => 'vpl', 'HPP92_009793' => 'vpl', 'HPP92_009796' => 'vpl', 'HPP92_009797' => 'vpl', 'HPP92_014940' => 'vpl', 'HPP92_014988' => 'vpl', 'Hund02463' => 'sun', 'Hund02760' => 'sun', 'Hund05071' => 'sun', 'Hund10108' => 'sun', 'Hund11204' => 'sun', 'Hund14016' => 'sun', 'Hund16464' => 'sun', 'Lalb_Chr09g0333391' => 'lal', 'Lalb_Chr11g0070461' => 'lal', 'Lalb_Chr12g0201671' => 'lal', 'Lalb_Chr13g0297161' => 'lal', 'Lj1g0002823' => 'lja', 'Lj3C1074T6' => 'lonja', 'Lj4A212T28' => 'lonja', 'Lj4g0005516' => 'lja', 'Lj4g0013705' => 'lja', 'Lj4g0027865' => 'lja', 'Lj5C92G16' => 'lonja', 'Lj5C92T12' => 'lonja', 'Lj7C596T3' => 'lonja', 'Lj9A446G59' => 'lonja', 'Lj9A482G21' => 'lonja', 'Lsat_1_v5_gn_1_28261' => 'lsa', 'Lsat_1_v5_gn_1_28281' => 'lsa', 'Lsat_1_v5_gn_1_32721' => 'lsa', 'Lsat_1_v5_gn_4_151760' => 'lsa', 'Lsat_1_v5_gn_4_2120' => 'lsa', 'Lsat_1_v5_gn_4_75761' => 'lsa', 'Lsat_1_v5_gn_5_10920' => 'lsa', 'Manes.02G099900' => 'mes', 'Manes.11G096200' => 'mes', 'Manes.12G007200' => 'mes', 'Manes.14G048300' => 'mes', 'Manes.17G114700' => 'mes', 'Mapoly0002s0070' => 'mpo', 'Mapoly0029s0099' => 'mpo', 'MBI07_g24742_MAGBIO' => 'mbi', 'MBI10_g27988_MAGBIO' => 'mbi', 'MBI11_g13057_MAGBIO' => 'mbi', 'MD02G1137200' => 'mdo', 'MD06G1137200' => 'mdo', 'MD07G1122300' => 'mdo', 'MD09G1078200' => 'mdo', 'MD13G1123700' => 'mdo', 'MD14G1151900' => 'mdo', 'MD17G1030900' => 'mdo', 'MD17G1068200' => 'mdo', 'MD17G1068600' => 'mdo', 'Medtr3g077540' => 'mtr', 'Medtr4g105530' => 'mtr', 'Medtr8g076580' => 'mtr', 'Medtr8g076590' => 'mtr', 'Medtr8g096410' => 'mtr', 'MELO3C016411.2' => 'cme', 'MELO3C017780.2' => 'cme', 'MELO3C022560.2' => 'cme', 'MELO3C026187.2' => 'cme', 'MELO3C026286.2' => 'cme', 'MELO3C032854.2' => 'cme', 'Migut.H02495' => 'egut', 'Migut.I00561' => 'egut', 'Migut.K01015' => 'egut', 'Migut.K01016' => 'egut', 'Migut.L00743' => 'egut', 'Migut.L00744' => 'egut', 'Migut.L00746' => 'egut', 'Migut.L00798' => 'egut', 'Migut.L00799' => 'egut', 'Migut.N02096' => 'egut', 'MSTRG.11259' => 'ama', 'MSTRG.23142' => 'ama', 'MSTRG.2499' => 'ama', 'Nitab4.5_0000003g0730' => 'nta', 'Nitab4.5_0000137g0020' => 'nta', 'Nitab4.5_0000721g0210' => 'nta', 'Nitab4.5_0000723g0050' => 'nta', 'Nitab4.5_0000913g0070' => 'nta', 'Nitab4.5_0001332g0040' => 'nta', 'Nitab4.5_0001771g0050' => 'nta', 'Nitab4.5_0001918g0050' => 'nta', 'Nitab4.5_0002686g0030' => 'nta', 'Nitab4.5_0003156g0020' => 'nta', 'Nitab4.5_0003383g0040' => 'nta', 'Nitab4.5_0003918g0010' => 'nta', 'Nitab4.5_0006760g0010' => 'nta', 'Nn1g05981' => 'nnu', 'Nn1g06288' => 'nnu', 'Nn3g16371' => 'nnu', 'Nn3g16786' => 'nnu', 'Nn4g22232' => 'nnu', 'Oeu005144.1' => 'oeu', 'Oeu005145.1' => 'oeu', 'Oeu011348.1' => 'oeu', 'Oeu016415.1' => 'oeu', 'Oeu023501.1' => 'oeu', 'Oeu044473.1' => 'oeu', 'Oeu048892.2' => 'oeu', 'Os01g0549200' => 'osa', 'Os02g0469300' => 'osa', 'Os04g0311100' => 'osa', 'Os06g0474900' => 'osa', 'Os10g0181700' => 'osa', 'Os11g0454800' => 'osa', 'Peaxi162Scf00037g00714' => 'pax', 'Peaxi162Scf00084g01217' => 'pax', 'Peaxi162Scf00257g00217' => 'pax', 'Peaxi162Scf00516g00215' => 'pax', 'Peaxi162Scf00689g00123' => 'pax', 'PGR044G2719' => 'pgr', 'PGR083G1360' => 'pgr', 'PGR102G2849' => 'pgr', 'PGR119G2534' => 'pgr', 'PGSC0003DMG400003538' => 'stu', 'PGSC0003DMG400028138' => 'stu', 'PGSC0003DMG400031732' => 'stu', 'PGSC0003DMG400038165' => 'stu', 'Phvul.002G284600' => 'pvu', 'Phvul.003G258200' => 'pvu', 'Phvul.009G176500' => 'pvu', 'Potri.003G167201' => 'ptr', 'Potri.005G118400' => 'ptr', 'Potri.012G089000' => 'ptr', 'Potri.012G102800' => 'ptr', 'Potri.015G079400' => 'ptr', 'Potri.015G100900' => 'ptr', 'Pp3c14_9810' => 'ppa', 'Pp3c15_10450' => 'ppa', 'Pp3c20_19150' => 'ppa', 'Pp3c23_12740' => 'ppa', 'Pp3c23_6310' => 'ppa', 'Pp3c24_3720' => 'ppa', 'Pp3c27_2580' => 'ppa', 'Pp3c9_8990' => 'ppa', 'PRCOL_00002854' => 'pco', 'Prupe.1G221200' => 'ppe', 'Prupe.3G289000' => 'ppe', 'Prupe.5G147000' => 'ppe', 'Prupe.6G157300' => 'ppe', 'Prupe.7G163400' => 'ppe', 'Psat0s2177g0040' => 'psa', 'Psat3g174760' => 'psa', 'Psat3g192160' => 'psa', 'Psat4g058520' => 'psa', 'Psat4g096840' => 'psa', 'Psat7g037320' => 'psa', 'PSO017G1274' => 'pso', 'PSO017G5166' => 'pso', 'PSO063G4558' => 'pso', 'PSO170G4458' => 'pso', 'PSO170G5005' => 'pso', 'PSO210G6156' => 'pso', 'PSO210G6635' => 'pso', 'PSO210G7397' => 'pso', 'PSO210G7700' => 'pso', 'PSO455G0035' => 'pso', 'PSO455G0180' => 'pso', 'PSO478G4515' => 'pso', 'PSO832G1305' => 'pso', 'PSO832G3489' => 'pso', 'QL02p075247' => 'qlo', 'QL03p051148' => 'qlo', 'QL05p010313' => 'qlo', 'QL06p034627' => 'qlo', 'QL10p001889' => 'qlo', 'QL10p010846' => 'qlo', 'RcHm_v2.0_Chr1g0350621' => 'rch', 'RcHm_v2.0_Chr1g0350641' => 'rch', 'RcHm_v2.0_Chr2g0092891' => 'rch', 'RcHm_v2.0_Chr2g0100251' => 'rch', 'RcHm_v2.0_Chr2g0158661' => 'rch', 'RcHm_v2.0_Chr2g0172741' => 'rch', 'RcHm_v2.0_Chr4g0429571' => 'rch', 'RcHm_v2.0_Chr5g0042471' => 'rch', 'RcHm_v2.0_Chr7g0189451' => 'rch', 'Rhsim08G0052000' => 'rsi', 'Rhsim08G0174400' => 'rsi', 'Rhsim08G0193200' => 'rsi', 'Rhsim10G0214800' => 'rsi', 'Rhsim10G0214900' => 'rsi', 'Rhsim10G0215000' => 'rsi', 'Rhsim12G0022900' => 'rsi', 'Rhsim12G0177500' => 'rsi', 'Rhsim12G0177700' => 'rsi', 'Sabra03G0122600' => 'sbr', 'Sabra05G0097400' => 'sbr', 'Sabra12G0064100' => 'sbr', 'Sabra15G0121300' => 'sbr', 'SalBow2G0642' => 'sbo', 'SalBow5G2667' => 'sbo', 'SalBow5G4873' => 'sbo', 'SalBow8G2395' => 'sbo', 'Sc03g0003290' => 'sci', 'Sc10g0010130' => 'sci', 'Sc22g0003650' => 'sci', 'Sed0001603' => 'sed', 'Sed0004259' => 'sed', 'Sed0006789' => 'sed', 'Sed0011838' => 'sed', 'Sed0012964' => 'sed', 'Sed0016383' => 'sed', 'Sed0019010' => 'sed', 'Sed0020188' => 'sed', 'SEGI_04702' => 'sgi', 'SEGI_17231' => 'sgi', 'SEGI_18877' => 'sgi', 'SEGI_25196' => 'sgi', 'SEGI_25515' => 'sgi', 'SEGI_28445' => 'sgi', 'SEGI_37452' => 'sgi', 'SGA_v2.0_scaffold188G40336' => 'sas', 'SGA_v2.0_scaffold228G43247' => 'sas', 'SGA_v2.0_scaffold280G46853' => 'sas', 'SGA_v2.0_scaffold34G13808' => 'sas', 'SGA_v2.0_scaffold40G15576' => 'sas', 'SGA_v2.0_scaffold611G53188' => 'sas', 'SGA_v2.0_scaffold78G25461' => 'sas', 'SGA_v2.0_scaffold90G27888' => 'sas', 'SHI08601' => 'shi', 'SHI08606' => 'shi', 'SHI17117' => 'shi', 'SHI17119' => 'shi', 'SMO118G0201' => 'smo', 'SMO169G0247' => 'smo', 'SMO176G0006' => 'smo', 'SMO176G0015' => 'smo', 'SMO202G0006' => 'smo', 'SMO240G0050' => 'smo', 'SMO286G0009' => 'smo', 'SMO338G0033' => 'smo', 'SMO356G0533' => 'smo', 'SMO364G0382' => 'smo', 'SMO367G0166' => 'smo', 'SMO367G1098' => 'smo', 'Solyc01g009920.3' => 'sly', 'Solyc01g099300.3' => 'sly', 'Solyc02g084700.3' => 'sly', 'Solyc03g097520.3' => 'sly', 'Solyc06g071580.3' => 'sly', 'Solyc10g081760.3' => 'sly', 'Sopen01g005480' => 'spe', 'Sopen01g042850' => 'spe', 'Sopen02g029370' => 'spe', 'Sopen03g028280' => 'spe', 'Sopen06g027870' => 'spe', 'Sopen10g032270' => 'spe', 'Sp5g18180' => 'spa', 'Sp6g12880' => 'spa', 'Sp6g30850' => 'spa', 'Sp7g22960' => 'spa', 'Sp7g34010' => 'spa', 'SpUn1326_0010' => 'spa', 'TAR371G0242' => 'tar', 'TAR622G0638' => 'tar', 'TAR628G1548' => 'tar', 'TAR629G1079' => 'tar', 'TAR629G3413' => 'tar', 'THA.LOC104804249' => 'tha', 'THA.LOC104808315' => 'tha', 'THA.LOC104809238' => 'tha', 'THA.LOC104825484' => 'tha', 'Thecc.01G025500' => 'tca', 'Thecc.03G015800' => 'tca', 'Thecc.03G018000' => 'tca', 'Thecc.03G134800' => 'tca', 'Thecc.04G014700' => 'tca', 'Thhalv10006991m.g' => 'esa', 'Thhalv10012707m.g' => 'esa', 'Thhalv10015739m.g' => 'esa', 'Thhalv10024553m.g' => 'esa', 'Thhalv10024673m.g' => 'esa', 'Thhalv10029187m.g' => 'esa', 'TPR.G12971' => 'tpr', 'TPR.G29396' => 'tpr', 'TPR.G33376' => 'tpr', 'TPR.G35508' => 'tpr', 'TPR.G35516' => 'tpr', 'TPR.G37317' => 'tpr', 'TPR.G37389' => 'tpr', 'TPR.G37523' => 'tpr', 'TPR.G559' => 'tpr', 'TWI14G0070' => 'twi', 'TWI14G0729' => 'twi', 'TWI18G0596' => 'twi', 'TWI39G0780' => 'twi', 'TWI39G0850' => 'twi', 'TWI73G1052' => 'twi', 'unitig_52.g17485' => 'ugi', 'unitig_61.g26355' => 'ugi', 'vmacro01040' => 'vma', 'vmacro16731' => 'vma', 'vmacro18270' => 'vma', 'vmacro19142' => 'vma', 'vmacro19407' => 'vma', 'vmacro19408' => 'vma', 'vmacro21899' => 'vma', 'vmacro21900' => 'vma', 'vmacro21901' => 'vma', 'VMungo0251G0490' => 'vmu', 'VMungo0251G1748' => 'vmu', 'VMungo1309G0421' => 'vmu', 'Zm00001eb086500' => 'zma', 'Zm00001eb150680' => 'zma', 'Zm00001eb162330' => 'zma', 'Zm00001eb203130' => 'zma', 'Zm00001eb369480' => 'zma', 'Zm00001eb382340' => 'zma', 'Zm00001eb416360' => 'zma' ), 'gf_id' => 'HOM05D000902', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000902' ), 'data_identifier' => 'HOM05D000902', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000902', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '663', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02470' => 'bna', 'A01p16260' => 'bna', 'A02p01680' => 'bna', 'A03p16600' => 'bna', 'A03p55660' => 'bna', 'A03p64160' => 'bna', 'A03p64170' => 'bna', 'A08p31900' => 'bna', 'A09p59530' => 'bna', 'A10p08230' => 'bna', 'A10p25090' => 'bna', 'Aa31LG3G7100' => 'aar', 'Aa31LG3G7110' => 'aar', 'Aa31LG6G13160' => 'aar', 'Aa31LG7G10770' => 'aar', 'Aa31LG7G3830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2723' => 'aag', 'Actinidia08045' => 'ach', 'Actinidia08888' => 'ach', 'Actinidia18333' => 'ach', 'Actinidia19334' => 'ach', 'Actinidia25552' => 'ach', 'Actinidia26089' => 'ach', 'Actinidia30615' => 'ach', 'Actinidia30616' => 'ach', 'Actinidia33083' => 'ach', 'Actinidia35762' => 'ach', 'Ah.02g110620' => 'amhyb', 'Ah.11g046390' => 'amhyb', 'AL1G31670' => 'aly', 'AL6G23730' => 'aly', 'AL7G14740' => 'aly', 'AL7G14750' => 'aly', 'AL7G14760' => 'aly', 'AL7G28220' => 'aly', 'AL8G24940' => 'aly', 'Aqoxy3G01665' => 'aox', 'Aqoxy3G02853' => 'aox', 'Aqoxy5G01513' => 'aox', 'Aqoxy5G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8SKA4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ75LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKDA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0LJZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7REX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZP4YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWX7I5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2QKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS0L9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPCD8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q161UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC7XCF' => 'arhy', 'AT1G19100' => 'ath', 'AT4G24970' => 'ath', 'AT4G36270' => 'ath', 'AT4G36280' => 'ath', 'AT4G36290' => 'ath', 'AT5G13130' => 'ath', 'AT5G50780' => 'ath', 'ATR0582G266' => 'atr', 'ATR0661G195' => 'atr', 'ATR1152G031' => 'atr', 'Atru.chr11.2382' => 'acertr', 'Atru.chr12.2337' => 'acertr', 'Atru.chr3.744' => 'acertr', 'Atru.chr6.1870' => 'acertr', 'Atru.chr9.2515' => 'acertr', 'AUR62004120' => 'cqu', 'AUR62005667' => 'cqu', 'AUR62007634' => 'cqu', 'AUR62008186' => 'cqu', 'AUR62008187' => 'cqu', 'AUR62008188' => 'cqu', 'AUR62027954' => 'cqu', 'AUR62028766' => 'cqu', 'AUR62028767' => 'cqu', 'AUR62028768' => 'cqu', 'AUR62028886' => 'cqu', 'AUR62029563' => 'cqu', 'AUR62038832' => 'cqu', 'BcaB01g04149' => 'bca', 'BcaB03g12940' => 'bca', 'BcaB03g13090' => 'bca', 'BcaB03g14466' => 'bca', 'BcaB05g24035' => 'bca', 'BcaC01g06050' => 'bca', 'BcaC04g19148' => 'bca', 'BcaC04g20761' => 'bca', 'BcaC06g32845' => 'bca', 'BcaC07g41274' => 'bca', 'BcaC09g50827' => 'bca', 'BcaNung00741' => 'bca', 'BcaNung00742' => 'bca', 'BcaNung01859' => 'bca', 'BcaNung03985' => 'bca', 'BcaNung03989' => 'bca', 'BcaNung05661' => 'bca', 'BolC1t00257H' => 'bol', 'BolC1t01956H' => 'bol', 'BolC2t06534H' => 'bol', 'BolC3t14334H' => 'bol', 'BolC5t30451H' => 'bol', 'BolC7t45880H' => 'bol', 'BolC7t46586H' => 'bol', 'BolC8t49301H' => 'bol', 'BolC8t51837H' => 'bol', 'BolC9t56822H' => 'bol', 'BolC9t59235H' => 'bol', 'BraA01t00234Z' => 'bra', 'BraA01t01563Z' => 'bra', 'BraA02t05147Z' => 'bra', 'BraA03t10947Z' => 'bra', 'BraA03t14633Z' => 'bra', 'BraA08t35112Z' => 'bra', 'BraA09t41330Z' => 'bra', 'BraA10t44570Z' => 'bra', 'C01p02670' => 'bna', 'C01p20260' => 'bna', 'C02p05890' => 'bna', 'C03p19530' => 'bna', 'C05p17470' => 'bna', 'C07p53900' => 'bna', 'C07p61630' => 'bna', 'C08p16800' => 'bna', 'C08p42810' => 'bna', 'C09p39480' => 'bna', 'C09p63980' => 'bna', 'CAN.G1001.7' => 'can', 'CAN.G1034.55' => 'can', 'CAN.G143.7' => 'can', 'CAN.G3340.1' => 'can', 'CAN.G358.19' => 'can', 'CAN.G373.2' => 'can', 'CAN.G674.16' => 'can', 'CAN.G674.17' => 'can', 'CAN.G674.18' => 'can', 'CAN.G732.2' => 'can', 'CAN.G732.3' => 'can', 'CAN.G993.39' => 'can', 'CANSAT01G2052' => 'cansat', 'CANSAT80G0070' => 'cansat', 'CANSAT80G0483' => 'cansat', 'CANSAT80G0625' => 'cansat', 'CARHR019690' => 'chi', 'CARHR080280' => 'chi', 'CARHR152750' => 'chi', 'CARHR152760' => 'chi', 'CARHR152770' => 'chi', 'CARHR200340' => 'chi', 'CARHR232370' => 'chi', 'CARHR244670' => 'chi', 'CARHR244680' => 'chi', 'CARHR257520' => 'chi', 'Carub.0001s1872' => 'cru', 'Carub.0006s1130' => 'cru', 'Carub.0007s0396' => 'cru', 'Carub.0007s0397' => 'cru', 'Carub.0007s1608' => 'cru', 'Carub.0008s1068' => 'cru', 'Carub.0008s1077' => 'cru', 'Ca_16158_v3' => 'car', 'Ca_17571_v3' => 'car', 'Ca_21936_v3' => 'car', 'Ca_22350_v3' => 'car', 'CBR_g22445' => 'cbr', 'CBR_g26290' => 'cbr', 'Cc04_g09610' => 'ccan', 'Cc04_g12280' => 'ccan', 'Cc07_g10230' => 'ccan', 'CDE02G0093' => 'cde', 'CDE02G0701' => 'cde', 'CDE04G1050' => 'cde', 'CDE05G1833' => 'cde', 'CDE05G3058' => 'cde', 'CDE05G3380' => 'cde', 'CDE06G0536' => 'cde', 'Cfa006923' => 'cfa', 'Cfa009402' => 'cfa', 'Cfa018751' => 'cfa', 'Cfa019164' => 'cfa', 'Cfa022935' => 'cfa', 'Ciclev10019081m.g' => 'ccl', 'Ciclev10025076m.g' => 'ccl', 'Ciclev10030712m.g' => 'ccl', 'Ciclev10033760m.g' => 'ccl', 'CiPaw.05G105600' => 'cil', 'CiPaw.08G136700' => 'cil', 'CiPaw.11G003900' => 'cil', 'CiPaw.11G023700' => 'cil', 'CiPaw.12G003700' => 'cil', 'ClCG06G017100' => 'cla', 'ClCG06G018110' => 'cla', 'ClCG07G008800' => 'cla', 'ClCG07G015330' => 'cla', 'COL.COLO4_13698' => 'col', 'COL.COLO4_16659' => 'col', 'COL.COLO4_21986' => 'col', 'COL.COLO4_24049' => 'col', 'COL.COLO4_29061' => 'col', 'COL.COLO4_29075' => 'col', 'COL.COLO4_30094' => 'col', 'Cpa.g.c33689' => 'cpa', 'Cpa.g.sc108.39' => 'cpa', 'Cpa.g.sc108.41' => 'cpa', 'Cpa.g.sc1163.1' => 'cpa', 'Cpa.g.sc4.155' => 'cpa', 'Cpa.g.sc6.194' => 'cpa', 'CsaV3_1G000340' => 'csa', 'CsaV3_1G001400' => 'csa', 'CsaV3_4G002220' => 'csa', 'CsaV3_4G005370' => 'csa', 'CSS0007487' => 'camsi', 'CSS0008066' => 'camsi', 'CSS0009120' => 'camsi', 'CSS0015512' => 'camsi', 'CSS0022409' => 'camsi', 'CSS0025358' => 'camsi', 'CSS0044547' => 'camsi', 'DCAR_013057' => 'dca', 'DCAR_015058' => 'dca', 'DCAR_016027' => 'dca', 'DCAR_017327' => 'dca', 'DCAR_020743' => 'dca', 'DCAR_026157' => 'dca', 'DCAR_032339' => 'dca', 'DCAR_032340' => 'dca', 'Dinv11200' => 'din', 'Dinv11201' => 'din', 'Dinv20631' => 'din', 'Dinv23182' => 'din', 'Dinv33466' => 'din', 'Dinv33583' => 'din', 'Dinv38565' => 'din', 'Duzib068G0200' => 'dzi', 'Duzib147G0132' => 'dzi', 'Duzib147G0635' => 'dzi', 'Duzib205G1670' => 'dzi', 'Duzib251G0606' => 'dzi', 'ECA232G3336' => 'eca', 'ECA232G3763' => 'eca', 'ECA232G4845' => 'eca', 'ECA234G1607' => 'eca', 'ECA246G0932' => 'eca', 'ECA247G0781' => 'eca', 'ECA247G1932' => 'eca', 'ECA247G2079' => 'eca', 'ECA247G3338' => 'eca', 'ECA247G4115' => 'eca', 'EL10Ac3g06552' => 'bvu', 'EL10Ac5g10721' => 'bvu', 'EL10Ac5g10722' => 'bvu', 'EL10Ac5g10723' => 'bvu', 'EL10Ac5g11361' => 'bvu', 'EL10Ac6g13553' => 'bvu', 'EL10As8g23872' => 'bvu', 'Eucgr.B00250' => 'egr', 'Eucgr.B00251' => 'egr', 'Eucgr.B03533' => 'egr', 'Eucgr.I02381' => 'egr', 'Eucgr.K02700' => 'egr', 'FAN02G0174' => 'fan', 'FAN02G3146' => 'fan', 'FAN04G1672' => 'fan', 'FAN04G2273' => 'fan', 'FAN05G2791' => 'fan', 'FAN05G4035' => 'fan', 'FAN07G0834' => 'fan', 'FAN08G1198' => 'fan', 'FAN09G4182' => 'fan', 'FAN12G0496' => 'fan', 'FAN13G1027' => 'fan', 'FAN13G2951' => 'fan', 'FAN14G0705' => 'fan', 'FAN14G0720' => 'fan', 'FAN17G0201' => 'fan', 'FAN17G2665' => 'fan', 'FAN18G1456' => 'fan', 'FAN18G1525' => 'fan', 'FAN18G3500' => 'fan', 'FAN28G2670' => 'fan', 'FvH4_1g12391' => 'fve', 'FvH4_4g23220' => 'fve', 'FvH4_5g08810' => 'fve', 'FvH4_5g28960' => 'fve', 'FvH4_6g42820' => 'fve', 'FvH4_6g51110' => 'fve', 'Glyma.02G051802' => 'gma', 'Glyma.04G185300' => 'gma', 'Glyma.05G202900' => 'gma', 'Glyma.08G010300' => 'gma', 'Glyma.16G131900' => 'gma', 'Glyma.17G087900' => 'gma', 'Gohir.A07G048600' => 'ghi', 'Gohir.A11G179000' => 'ghi', 'Gohir.A12G140900' => 'ghi', 'Gohir.A12G140950' => 'ghi', 'Gohir.A12G191700' => 'ghi', 'Gohir.A13G086300' => 'ghi', 'Gohir.D07G052900' => 'ghi', 'Gohir.D11G186600' => 'ghi', 'Gohir.D12G145575' => 'ghi', 'Gohir.D12G145650' => 'ghi', 'Gohir.D12G145725' => 'ghi', 'Gohir.D12G194050' => 'ghi', 'Gohir.D13G091800' => 'ghi', 'Gorai.001G055900' => 'gra', 'Gorai.007G198400' => 'gra', 'Gorai.008G157000' => 'gra', 'Gorai.008G157100' => 'gra', 'Gorai.008G208700' => 'gra', 'Gorai.010G138700' => 'gra', 'GSVIVG01000977001' => 'vvi', 'GSVIVG01007708001' => 'vvi', 'GSVIVG01008587001' => 'vvi', 'GSVIVG01018849001' => 'vvi', 'GSVIVG01032432001' => 'vvi', 'HanXRQChr02g0034131' => 'han', 'HanXRQChr02g0035981' => 'han', 'HanXRQChr02g0035991' => 'han', 'HanXRQChr05g0155611' => 'han', 'HanXRQChr05g0155621' => 'han', 'HanXRQChr08g0236501' => 'han', 'HanXRQChr09g0261321' => 'han', 'HanXRQChr09g0272081' => 'han', 'HanXRQChr10g0310741' => 'han', 'HanXRQChr11g0325591' => 'han', 'HanXRQChr12g0385691' => 'han', 'HanXRQChr13g0387801' => 'han', 'HanXRQChr15g0463011' => 'han', 'Haze_03826' => 'cav', 'Haze_03827' => 'cav', 'Haze_07183' => 'cav', 'Haze_07537' => 'cav', 'Haze_07539' => 'cav', 'Haze_12461' => 'cav', 'Haze_16115' => 'cav', 'Haze_16808' => 'cav', 'Haze_18531' => 'cav', 'Hma1.2p1_0046F.1_g026700' => 'hma', 'Hma1.2p1_0046F.1_g026710' => 'hma', 'Hma1.2p1_0168F.1_g074340' => 'hma', 'Hma1.2p1_0266F.1_g107030' => 'hma', 'Hma1.2p1_0266F.1_g107060' => 'hma', 'Hma1.2p1_0275F.1_g110510' => 'hma', 'Hma1.2p1_0592F.1_g185490' => 'hma', 'Hma1.2p1_0592F.1_g185500' => 'hma', 'Hma1.2p1_0592F.1_g185510' => 'hma', 'Hma1.2p1_0592F.1_g185520' => 'hma', 'Hma1.2p1_0592F.1_g185530' => 'hma', 'Hma1.2p1_0818F.1_g223450' => 'hma', 'HPP92_009708' => 'vpl', 'HPP92_009793' => 'vpl', 'HPP92_009796' => 'vpl', 'HPP92_009797' => 'vpl', 'HPP92_014940' => 'vpl', 'HPP92_014988' => 'vpl', 'Hund02463' => 'sun', 'Hund02760' => 'sun', 'Hund05071' => 'sun', 'Hund10108' => 'sun', 'Hund11204' => 'sun', 'Hund14016' => 'sun', 'Hund16464' => 'sun', 'Lalb_Chr09g0333391' => 'lal', 'Lalb_Chr11g0070461' => 'lal', 'Lalb_Chr12g0201671' => 'lal', 'Lalb_Chr13g0297161' => 'lal', 'Lj1g0002823' => 'lja', 'Lj3C1074T6' => 'lonja', 'Lj4A212T28' => 'lonja', 'Lj4g0005516' => 'lja', 'Lj4g0013705' => 'lja', 'Lj4g0027865' => 'lja', 'Lj5C92G16' => 'lonja', 'Lj5C92T12' => 'lonja', 'Lj7C596T3' => 'lonja', 'Lj9A446G59' => 'lonja', 'Lj9A482G21' => 'lonja', 'Lsat_1_v5_gn_1_28261' => 'lsa', 'Lsat_1_v5_gn_1_28281' => 'lsa', 'Lsat_1_v5_gn_1_32721' => 'lsa', 'Lsat_1_v5_gn_4_151760' => 'lsa', 'Lsat_1_v5_gn_4_2120' => 'lsa', 'Lsat_1_v5_gn_4_75761' => 'lsa', 'Lsat_1_v5_gn_5_10920' => 'lsa', 'Manes.02G099900' => 'mes', 'Manes.11G096200' => 'mes', 'Manes.12G007200' => 'mes', 'Manes.14G048300' => 'mes', 'Manes.17G114700' => 'mes', 'Mapoly0002s0070' => 'mpo', 'Mapoly0029s0099' => 'mpo', 'MBI07_g24742_MAGBIO' => 'mbi', 'MBI10_g27988_MAGBIO' => 'mbi', 'MBI11_g13057_MAGBIO' => 'mbi', 'MD02G1137200' => 'mdo', 'MD06G1137200' => 'mdo', 'MD07G1122300' => 'mdo', 'MD09G1078200' => 'mdo', 'MD13G1123700' => 'mdo', 'MD14G1151900' => 'mdo', 'MD17G1030900' => 'mdo', 'MD17G1068200' => 'mdo', 'MD17G1068600' => 'mdo', 'Medtr3g077540' => 'mtr', 'Medtr4g105530' => 'mtr', 'Medtr8g076580' => 'mtr', 'Medtr8g076590' => 'mtr', 'Medtr8g096410' => 'mtr', 'MELO3C016411.2' => 'cme', 'MELO3C017780.2' => 'cme', 'MELO3C022560.2' => 'cme', 'MELO3C026187.2' => 'cme', 'MELO3C026286.2' => 'cme', 'MELO3C032854.2' => 'cme', 'Migut.H02495' => 'egut', 'Migut.I00561' => 'egut', 'Migut.K01015' => 'egut', 'Migut.K01016' => 'egut', 'Migut.L00743' => 'egut', 'Migut.L00744' => 'egut', 'Migut.L00746' => 'egut', 'Migut.L00798' => 'egut', 'Migut.L00799' => 'egut', 'Migut.N02096' => 'egut', 'MSTRG.11259' => 'ama', 'MSTRG.23142' => 'ama', 'MSTRG.2499' => 'ama', 'Nitab4.5_0000003g0730' => 'nta', 'Nitab4.5_0000137g0020' => 'nta', 'Nitab4.5_0000721g0210' => 'nta', 'Nitab4.5_0000723g0050' => 'nta', 'Nitab4.5_0000913g0070' => 'nta', 'Nitab4.5_0001332g0040' => 'nta', 'Nitab4.5_0001771g0050' => 'nta', 'Nitab4.5_0001918g0050' => 'nta', 'Nitab4.5_0002686g0030' => 'nta', 'Nitab4.5_0003156g0020' => 'nta', 'Nitab4.5_0003383g0040' => 'nta', 'Nitab4.5_0003918g0010' => 'nta', 'Nitab4.5_0006760g0010' => 'nta', 'Nn1g05981' => 'nnu', 'Nn1g06288' => 'nnu', 'Nn3g16371' => 'nnu', 'Nn3g16786' => 'nnu', 'Nn4g22232' => 'nnu', 'Oeu005144.1' => 'oeu', 'Oeu005145.1' => 'oeu', 'Oeu011348.1' => 'oeu', 'Oeu016415.1' => 'oeu', 'Oeu023501.1' => 'oeu', 'Oeu044473.1' => 'oeu', 'Oeu048892.2' => 'oeu', 'Os01g0549200' => 'osa', 'Os02g0469300' => 'osa', 'Os04g0311100' => 'osa', 'Os06g0474900' => 'osa', 'Os10g0181700' => 'osa', 'Os11g0454800' => 'osa', 'Peaxi162Scf00037g00714' => 'pax', 'Peaxi162Scf00084g01217' => 'pax', 'Peaxi162Scf00257g00217' => 'pax', 'Peaxi162Scf00516g00215' => 'pax', 'Peaxi162Scf00689g00123' => 'pax', 'PGR044G2719' => 'pgr', 'PGR083G1360' => 'pgr', 'PGR102G2849' => 'pgr', 'PGR119G2534' => 'pgr', 'PGSC0003DMG400003538' => 'stu', 'PGSC0003DMG400028138' => 'stu', 'PGSC0003DMG400031732' => 'stu', 'PGSC0003DMG400038165' => 'stu', 'Phvul.002G284600' => 'pvu', 'Phvul.003G258200' => 'pvu', 'Phvul.009G176500' => 'pvu', 'Potri.003G167201' => 'ptr', 'Potri.005G118400' => 'ptr', 'Potri.012G089000' => 'ptr', 'Potri.012G102800' => 'ptr', 'Potri.015G079400' => 'ptr', 'Potri.015G100900' => 'ptr', 'Pp3c14_9810' => 'ppa', 'Pp3c15_10450' => 'ppa', 'Pp3c20_19150' => 'ppa', 'Pp3c23_12740' => 'ppa', 'Pp3c23_6310' => 'ppa', 'Pp3c24_3720' => 'ppa', 'Pp3c27_2580' => 'ppa', 'Pp3c9_8990' => 'ppa', 'PRCOL_00002854' => 'pco', 'Prupe.1G221200' => 'ppe', 'Prupe.3G289000' => 'ppe', 'Prupe.5G147000' => 'ppe', 'Prupe.6G157300' => 'ppe', 'Prupe.7G163400' => 'ppe', 'Psat0s2177g0040' => 'psa', 'Psat3g174760' => 'psa', 'Psat3g192160' => 'psa', 'Psat4g058520' => 'psa', 'Psat4g096840' => 'psa', 'Psat7g037320' => 'psa', 'PSO017G1274' => 'pso', 'PSO017G5166' => 'pso', 'PSO063G4558' => 'pso', 'PSO170G4458' => 'pso', 'PSO170G5005' => 'pso', 'PSO210G6156' => 'pso', 'PSO210G6635' => 'pso', 'PSO210G7397' => 'pso', 'PSO210G7700' => 'pso', 'PSO455G0035' => 'pso', 'PSO455G0180' => 'pso', 'PSO478G4515' => 'pso', 'PSO832G1305' => 'pso', 'PSO832G3489' => 'pso', 'QL02p075247' => 'qlo', 'QL03p051148' => 'qlo', 'QL05p010313' => 'qlo', 'QL06p034627' => 'qlo', 'QL10p001889' => 'qlo', 'QL10p010846' => 'qlo', 'RcHm_v2.0_Chr1g0350621' => 'rch', 'RcHm_v2.0_Chr1g0350641' => 'rch', 'RcHm_v2.0_Chr2g0092891' => 'rch', 'RcHm_v2.0_Chr2g0100251' => 'rch', 'RcHm_v2.0_Chr2g0158661' => 'rch', 'RcHm_v2.0_Chr2g0172741' => 'rch', 'RcHm_v2.0_Chr4g0429571' => 'rch', 'RcHm_v2.0_Chr5g0042471' => 'rch', 'RcHm_v2.0_Chr7g0189451' => 'rch', 'Rhsim08G0052000' => 'rsi', 'Rhsim08G0174400' => 'rsi', 'Rhsim08G0193200' => 'rsi', 'Rhsim10G0214800' => 'rsi', 'Rhsim10G0214900' => 'rsi', 'Rhsim10G0215000' => 'rsi', 'Rhsim12G0022900' => 'rsi', 'Rhsim12G0177500' => 'rsi', 'Rhsim12G0177700' => 'rsi', 'Sabra03G0122600' => 'sbr', 'Sabra05G0097400' => 'sbr', 'Sabra12G0064100' => 'sbr', 'Sabra15G0121300' => 'sbr', 'SalBow2G0642' => 'sbo', 'SalBow5G2667' => 'sbo', 'SalBow5G4873' => 'sbo', 'SalBow8G2395' => 'sbo', 'Sc03g0003290' => 'sci', 'Sc10g0010130' => 'sci', 'Sc22g0003650' => 'sci', 'Sed0001603' => 'sed', 'Sed0004259' => 'sed', 'Sed0006789' => 'sed', 'Sed0011838' => 'sed', 'Sed0012964' => 'sed', 'Sed0016383' => 'sed', 'Sed0019010' => 'sed', 'Sed0020188' => 'sed', 'SEGI_04702' => 'sgi', 'SEGI_17231' => 'sgi', 'SEGI_18877' => 'sgi', 'SEGI_25196' => 'sgi', 'SEGI_25515' => 'sgi', 'SEGI_28445' => 'sgi', 'SEGI_37452' => 'sgi', 'SGA_v2.0_scaffold188G40336' => 'sas', 'SGA_v2.0_scaffold228G43247' => 'sas', 'SGA_v2.0_scaffold280G46853' => 'sas', 'SGA_v2.0_scaffold34G13808' => 'sas', 'SGA_v2.0_scaffold40G15576' => 'sas', 'SGA_v2.0_scaffold611G53188' => 'sas', 'SGA_v2.0_scaffold78G25461' => 'sas', 'SGA_v2.0_scaffold90G27888' => 'sas', 'SHI08601' => 'shi', 'SHI08606' => 'shi', 'SHI17117' => 'shi', 'SHI17119' => 'shi', 'SMO118G0201' => 'smo', 'SMO169G0247' => 'smo', 'SMO176G0006' => 'smo', 'SMO176G0015' => 'smo', 'SMO202G0006' => 'smo', 'SMO240G0050' => 'smo', 'SMO286G0009' => 'smo', 'SMO338G0033' => 'smo', 'SMO356G0533' => 'smo', 'SMO364G0382' => 'smo', 'SMO367G0166' => 'smo', 'SMO367G1098' => 'smo', 'Solyc01g009920.3' => 'sly', 'Solyc01g099300.3' => 'sly', 'Solyc02g084700.3' => 'sly', 'Solyc03g097520.3' => 'sly', 'Solyc06g071580.3' => 'sly', 'Solyc10g081760.3' => 'sly', 'Sopen01g005480' => 'spe', 'Sopen01g042850' => 'spe', 'Sopen02g029370' => 'spe', 'Sopen03g028280' => 'spe', 'Sopen06g027870' => 'spe', 'Sopen10g032270' => 'spe', 'Sp5g18180' => 'spa', 'Sp6g12880' => 'spa', 'Sp6g30850' => 'spa', 'Sp7g22960' => 'spa', 'Sp7g34010' => 'spa', 'SpUn1326_0010' => 'spa', 'TAR371G0242' => 'tar', 'TAR622G0638' => 'tar', 'TAR628G1548' => 'tar', 'TAR629G1079' => 'tar', 'TAR629G3413' => 'tar', 'THA.LOC104804249' => 'tha', 'THA.LOC104808315' => 'tha', 'THA.LOC104809238' => 'tha', 'THA.LOC104825484' => 'tha', 'Thecc.01G025500' => 'tca', 'Thecc.03G015800' => 'tca', 'Thecc.03G018000' => 'tca', 'Thecc.03G134800' => 'tca', 'Thecc.04G014700' => 'tca', 'Thhalv10006991m.g' => 'esa', 'Thhalv10012707m.g' => 'esa', 'Thhalv10015739m.g' => 'esa', 'Thhalv10024553m.g' => 'esa', 'Thhalv10024673m.g' => 'esa', 'Thhalv10029187m.g' => 'esa', 'TPR.G12971' => 'tpr', 'TPR.G29396' => 'tpr', 'TPR.G33376' => 'tpr', 'TPR.G35508' => 'tpr', 'TPR.G35516' => 'tpr', 'TPR.G37317' => 'tpr', 'TPR.G37389' => 'tpr', 'TPR.G37523' => 'tpr', 'TPR.G559' => 'tpr', 'TWI14G0070' => 'twi', 'TWI14G0729' => 'twi', 'TWI18G0596' => 'twi', 'TWI39G0780' => 'twi', 'TWI39G0850' => 'twi', 'TWI73G1052' => 'twi', 'unitig_52.g17485' => 'ugi', 'unitig_61.g26355' => 'ugi', 'vmacro01040' => 'vma', 'vmacro16731' => 'vma', 'vmacro18270' => 'vma', 'vmacro19142' => 'vma', 'vmacro19407' => 'vma', 'vmacro19408' => 'vma', 'vmacro21899' => 'vma', 'vmacro21900' => 'vma', 'vmacro21901' => 'vma', 'VMungo0251G0490' => 'vmu', 'VMungo0251G1748' => 'vmu', 'VMungo1309G0421' => 'vmu', 'Zm00001eb086500' => 'zma', 'Zm00001eb150680' => 'zma', 'Zm00001eb162330' => 'zma', 'Zm00001eb203130' => 'zma', 'Zm00001eb369480' => 'zma', 'Zm00001eb382340' => 'zma', 'Zm00001eb416360' => 'zma' ) $gf_id = 'HOM05D000902' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000902' ) $data_identifier = 'HOM05D000902' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 13, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 10, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 6, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 9, 'hma' => (int) 12, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 4, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 6, 'ppa' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 6, 'rch' => (int) 9, 'rsi' => (int) 9, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 12, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 3, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416360' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000902', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '663', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02470' => 'bna', 'A01p16260' => 'bna', 'A02p01680' => 'bna', 'A03p16600' => 'bna', 'A03p55660' => 'bna', 'A03p64160' => 'bna', 'A03p64170' => 'bna', 'A08p31900' => 'bna', 'A09p59530' => 'bna', 'A10p08230' => 'bna', 'A10p25090' => 'bna', 'Aa31LG3G7100' => 'aar', 'Aa31LG3G7110' => 'aar', 'Aa31LG6G13160' => 'aar', 'Aa31LG7G10770' => 'aar', 'Aa31LG7G3830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2723' => 'aag', 'Actinidia08045' => 'ach', 'Actinidia08888' => 'ach', 'Actinidia18333' => 'ach', 'Actinidia19334' => 'ach', 'Actinidia25552' => 'ach', 'Actinidia26089' => 'ach', 'Actinidia30615' => 'ach', 'Actinidia30616' => 'ach', 'Actinidia33083' => 'ach', 'Actinidia35762' => 'ach', 'Ah.02g110620' => 'amhyb', 'Ah.11g046390' => 'amhyb', 'AL1G31670' => 'aly', 'AL6G23730' => 'aly', 'AL7G14740' => 'aly', 'AL7G14750' => 'aly', 'AL7G14760' => 'aly', 'AL7G28220' => 'aly', 'AL8G24940' => 'aly', 'Aqoxy3G01665' => 'aox', 'Aqoxy3G02853' => 'aox', 'Aqoxy5G01513' => 'aox', 'Aqoxy5G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8SKA4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ75LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKDA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0LJZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7REX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZP4YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWX7I5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2QKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS0L9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPCD8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q161UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC7XCF' => 'arhy', 'AT1G19100' => 'ath', 'AT4G24970' => 'ath', 'AT4G36270' => 'ath', 'AT4G36280' => 'ath', 'AT4G36290' => 'ath', 'AT5G13130' => 'ath', 'AT5G50780' => 'ath', 'ATR0582G266' => 'atr', 'ATR0661G195' => 'atr', 'ATR1152G031' => 'atr', 'Atru.chr11.2382' => 'acertr', 'Atru.chr12.2337' => 'acertr', 'Atru.chr3.744' => 'acertr', 'Atru.chr6.1870' => 'acertr', 'Atru.chr9.2515' => 'acertr', 'AUR62004120' => 'cqu', 'AUR62005667' => 'cqu', 'AUR62007634' => 'cqu', 'AUR62008186' => 'cqu', 'AUR62008187' => 'cqu', 'AUR62008188' => 'cqu', 'AUR62027954' => 'cqu', 'AUR62028766' => 'cqu', 'AUR62028767' => 'cqu', 'AUR62028768' => 'cqu', 'AUR62028886' => 'cqu', 'AUR62029563' => 'cqu', 'AUR62038832' => 'cqu', 'BcaB01g04149' => 'bca', 'BcaB03g12940' => 'bca', 'BcaB03g13090' => 'bca', 'BcaB03g14466' => 'bca', 'BcaB05g24035' => 'bca', 'BcaC01g06050' => 'bca', 'BcaC04g19148' => 'bca', 'BcaC04g20761' => 'bca', 'BcaC06g32845' => 'bca', 'BcaC07g41274' => 'bca', 'BcaC09g50827' => 'bca', 'BcaNung00741' => 'bca', 'BcaNung00742' => 'bca', 'BcaNung01859' => 'bca', 'BcaNung03985' => 'bca', 'BcaNung03989' => 'bca', 'BcaNung05661' => 'bca', 'BolC1t00257H' => 'bol', 'BolC1t01956H' => 'bol', 'BolC2t06534H' => 'bol', 'BolC3t14334H' => 'bol', 'BolC5t30451H' => 'bol', 'BolC7t45880H' => 'bol', 'BolC7t46586H' => 'bol', 'BolC8t49301H' => 'bol', 'BolC8t51837H' => 'bol', 'BolC9t56822H' => 'bol', 'BolC9t59235H' => 'bol', 'BraA01t00234Z' => 'bra', 'BraA01t01563Z' => 'bra', 'BraA02t05147Z' => 'bra', 'BraA03t10947Z' => 'bra', 'BraA03t14633Z' => 'bra', 'BraA08t35112Z' => 'bra', 'BraA09t41330Z' => 'bra', 'BraA10t44570Z' => 'bra', 'C01p02670' => 'bna', 'C01p20260' => 'bna', 'C02p05890' => 'bna', 'C03p19530' => 'bna', 'C05p17470' => 'bna', 'C07p53900' => 'bna', 'C07p61630' => 'bna', 'C08p16800' => 'bna', 'C08p42810' => 'bna', 'C09p39480' => 'bna', 'C09p63980' => 'bna', 'CAN.G1001.7' => 'can', 'CAN.G1034.55' => 'can', 'CAN.G143.7' => 'can', 'CAN.G3340.1' => 'can', 'CAN.G358.19' => 'can', 'CAN.G373.2' => 'can', 'CAN.G674.16' => 'can', 'CAN.G674.17' => 'can', 'CAN.G674.18' => 'can', 'CAN.G732.2' => 'can', 'CAN.G732.3' => 'can', 'CAN.G993.39' => 'can', 'CANSAT01G2052' => 'cansat', 'CANSAT80G0070' => 'cansat', 'CANSAT80G0483' => 'cansat', 'CANSAT80G0625' => 'cansat', 'CARHR019690' => 'chi', 'CARHR080280' => 'chi', 'CARHR152750' => 'chi', 'CARHR152760' => 'chi', 'CARHR152770' => 'chi', 'CARHR200340' => 'chi', 'CARHR232370' => 'chi', 'CARHR244670' => 'chi', 'CARHR244680' => 'chi', 'CARHR257520' => 'chi', 'Carub.0001s1872' => 'cru', 'Carub.0006s1130' => 'cru', 'Carub.0007s0396' => 'cru', 'Carub.0007s0397' => 'cru', 'Carub.0007s1608' => 'cru', 'Carub.0008s1068' => 'cru', 'Carub.0008s1077' => 'cru', 'Ca_16158_v3' => 'car', 'Ca_17571_v3' => 'car', 'Ca_21936_v3' => 'car', 'Ca_22350_v3' => 'car', 'CBR_g22445' => 'cbr', 'CBR_g26290' => 'cbr', 'Cc04_g09610' => 'ccan', 'Cc04_g12280' => 'ccan', 'Cc07_g10230' => 'ccan', 'CDE02G0093' => 'cde', 'CDE02G0701' => 'cde', 'CDE04G1050' => 'cde', 'CDE05G1833' => 'cde', 'CDE05G3058' => 'cde', 'CDE05G3380' => 'cde', 'CDE06G0536' => 'cde', 'Cfa006923' => 'cfa', 'Cfa009402' => 'cfa', 'Cfa018751' => 'cfa', 'Cfa019164' => 'cfa', 'Cfa022935' => 'cfa', 'Ciclev10019081m.g' => 'ccl', 'Ciclev10025076m.g' => 'ccl', 'Ciclev10030712m.g' => 'ccl', 'Ciclev10033760m.g' => 'ccl', 'CiPaw.05G105600' => 'cil', 'CiPaw.08G136700' => 'cil', 'CiPaw.11G003900' => 'cil', 'CiPaw.11G023700' => 'cil', 'CiPaw.12G003700' => 'cil', 'ClCG06G017100' => 'cla', 'ClCG06G018110' => 'cla', 'ClCG07G008800' => 'cla', 'ClCG07G015330' => 'cla', 'COL.COLO4_13698' => 'col', 'COL.COLO4_16659' => 'col', 'COL.COLO4_21986' => 'col', 'COL.COLO4_24049' => 'col', 'COL.COLO4_29061' => 'col', 'COL.COLO4_29075' => 'col', 'COL.COLO4_30094' => 'col', 'Cpa.g.c33689' => 'cpa', 'Cpa.g.sc108.39' => 'cpa', 'Cpa.g.sc108.41' => 'cpa', 'Cpa.g.sc1163.1' => 'cpa', 'Cpa.g.sc4.155' => 'cpa', 'Cpa.g.sc6.194' => 'cpa', 'CsaV3_1G000340' => 'csa', 'CsaV3_1G001400' => 'csa', 'CsaV3_4G002220' => 'csa', 'CsaV3_4G005370' => 'csa', 'CSS0007487' => 'camsi', 'CSS0008066' => 'camsi', 'CSS0009120' => 'camsi', 'CSS0015512' => 'camsi', 'CSS0022409' => 'camsi', 'CSS0025358' => 'camsi', 'CSS0044547' => 'camsi', 'DCAR_013057' => 'dca', 'DCAR_015058' => 'dca', 'DCAR_016027' => 'dca', 'DCAR_017327' => 'dca', 'DCAR_020743' => 'dca', 'DCAR_026157' => 'dca', 'DCAR_032339' => 'dca', 'DCAR_032340' => 'dca', 'Dinv11200' => 'din', 'Dinv11201' => 'din', 'Dinv20631' => 'din', 'Dinv23182' => 'din', 'Dinv33466' => 'din', 'Dinv33583' => 'din', 'Dinv38565' => 'din', 'Duzib068G0200' => 'dzi', 'Duzib147G0132' => 'dzi', 'Duzib147G0635' => 'dzi', 'Duzib205G1670' => 'dzi', 'Duzib251G0606' => 'dzi', 'ECA232G3336' => 'eca', 'ECA232G3763' => 'eca', 'ECA232G4845' => 'eca', 'ECA234G1607' => 'eca', 'ECA246G0932' => 'eca', 'ECA247G0781' => 'eca', 'ECA247G1932' => 'eca', 'ECA247G2079' => 'eca', 'ECA247G3338' => 'eca', 'ECA247G4115' => 'eca', 'EL10Ac3g06552' => 'bvu', 'EL10Ac5g10721' => 'bvu', 'EL10Ac5g10722' => 'bvu', 'EL10Ac5g10723' => 'bvu', 'EL10Ac5g11361' => 'bvu', 'EL10Ac6g13553' => 'bvu', 'EL10As8g23872' => 'bvu', 'Eucgr.B00250' => 'egr', 'Eucgr.B00251' => 'egr', 'Eucgr.B03533' => 'egr', 'Eucgr.I02381' => 'egr', 'Eucgr.K02700' => 'egr', 'FAN02G0174' => 'fan', 'FAN02G3146' => 'fan', 'FAN04G1672' => 'fan', 'FAN04G2273' => 'fan', 'FAN05G2791' => 'fan', 'FAN05G4035' => 'fan', 'FAN07G0834' => 'fan', 'FAN08G1198' => 'fan', 'FAN09G4182' => 'fan', 'FAN12G0496' => 'fan', 'FAN13G1027' => 'fan', 'FAN13G2951' => 'fan', 'FAN14G0705' => 'fan', 'FAN14G0720' => 'fan', 'FAN17G0201' => 'fan', 'FAN17G2665' => 'fan', 'FAN18G1456' => 'fan', 'FAN18G1525' => 'fan', 'FAN18G3500' => 'fan', 'FAN28G2670' => 'fan', 'FvH4_1g12391' => 'fve', 'FvH4_4g23220' => 'fve', 'FvH4_5g08810' => 'fve', 'FvH4_5g28960' => 'fve', 'FvH4_6g42820' => 'fve', 'FvH4_6g51110' => 'fve', 'Glyma.02G051802' => 'gma', 'Glyma.04G185300' => 'gma', 'Glyma.05G202900' => 'gma', 'Glyma.08G010300' => 'gma', 'Glyma.16G131900' => 'gma', 'Glyma.17G087900' => 'gma', 'Gohir.A07G048600' => 'ghi', 'Gohir.A11G179000' => 'ghi', 'Gohir.A12G140900' => 'ghi', 'Gohir.A12G140950' => 'ghi', 'Gohir.A12G191700' => 'ghi', 'Gohir.A13G086300' => 'ghi', 'Gohir.D07G052900' => 'ghi', 'Gohir.D11G186600' => 'ghi', 'Gohir.D12G145575' => 'ghi', 'Gohir.D12G145650' => 'ghi', 'Gohir.D12G145725' => 'ghi', 'Gohir.D12G194050' => 'ghi', 'Gohir.D13G091800' => 'ghi', 'Gorai.001G055900' => 'gra', 'Gorai.007G198400' => 'gra', 'Gorai.008G157000' => 'gra', 'Gorai.008G157100' => 'gra', 'Gorai.008G208700' => 'gra', 'Gorai.010G138700' => 'gra', 'GSVIVG01000977001' => 'vvi', 'GSVIVG01007708001' => 'vvi', 'GSVIVG01008587001' => 'vvi', 'GSVIVG01018849001' => 'vvi', 'GSVIVG01032432001' => 'vvi', 'HanXRQChr02g0034131' => 'han', 'HanXRQChr02g0035981' => 'han', 'HanXRQChr02g0035991' => 'han', 'HanXRQChr05g0155611' => 'han', 'HanXRQChr05g0155621' => 'han', 'HanXRQChr08g0236501' => 'han', 'HanXRQChr09g0261321' => 'han', 'HanXRQChr09g0272081' => 'han', 'HanXRQChr10g0310741' => 'han', 'HanXRQChr11g0325591' => 'han', 'HanXRQChr12g0385691' => 'han', 'HanXRQChr13g0387801' => 'han', 'HanXRQChr15g0463011' => 'han', 'Haze_03826' => 'cav', 'Haze_03827' => 'cav', 'Haze_07183' => 'cav', 'Haze_07537' => 'cav', 'Haze_07539' => 'cav', 'Haze_12461' => 'cav', 'Haze_16115' => 'cav', 'Haze_16808' => 'cav', 'Haze_18531' => 'cav', 'Hma1.2p1_0046F.1_g026700' => 'hma', 'Hma1.2p1_0046F.1_g026710' => 'hma', 'Hma1.2p1_0168F.1_g074340' => 'hma', 'Hma1.2p1_0266F.1_g107030' => 'hma', 'Hma1.2p1_0266F.1_g107060' => 'hma', 'Hma1.2p1_0275F.1_g110510' => 'hma', 'Hma1.2p1_0592F.1_g185490' => 'hma', 'Hma1.2p1_0592F.1_g185500' => 'hma', 'Hma1.2p1_0592F.1_g185510' => 'hma', 'Hma1.2p1_0592F.1_g185520' => 'hma', 'Hma1.2p1_0592F.1_g185530' => 'hma', 'Hma1.2p1_0818F.1_g223450' => 'hma', 'HPP92_009708' => 'vpl', 'HPP92_009793' => 'vpl', 'HPP92_009796' => 'vpl', 'HPP92_009797' => 'vpl', 'HPP92_014940' => 'vpl', 'HPP92_014988' => 'vpl', 'Hund02463' => 'sun', 'Hund02760' => 'sun', 'Hund05071' => 'sun', 'Hund10108' => 'sun', 'Hund11204' => 'sun', 'Hund14016' => 'sun', 'Hund16464' => 'sun', 'Lalb_Chr09g0333391' => 'lal', 'Lalb_Chr11g0070461' => 'lal', 'Lalb_Chr12g0201671' => 'lal', 'Lalb_Chr13g0297161' => 'lal', 'Lj1g0002823' => 'lja', 'Lj3C1074T6' => 'lonja', 'Lj4A212T28' => 'lonja', 'Lj4g0005516' => 'lja', 'Lj4g0013705' => 'lja', 'Lj4g0027865' => 'lja', 'Lj5C92G16' => 'lonja', 'Lj5C92T12' => 'lonja', 'Lj7C596T3' => 'lonja', 'Lj9A446G59' => 'lonja', 'Lj9A482G21' => 'lonja', 'Lsat_1_v5_gn_1_28261' => 'lsa', 'Lsat_1_v5_gn_1_28281' => 'lsa', 'Lsat_1_v5_gn_1_32721' => 'lsa', 'Lsat_1_v5_gn_4_151760' => 'lsa', 'Lsat_1_v5_gn_4_2120' => 'lsa', 'Lsat_1_v5_gn_4_75761' => 'lsa', 'Lsat_1_v5_gn_5_10920' => 'lsa', 'Manes.02G099900' => 'mes', 'Manes.11G096200' => 'mes', 'Manes.12G007200' => 'mes', 'Manes.14G048300' => 'mes', 'Manes.17G114700' => 'mes', 'Mapoly0002s0070' => 'mpo', 'Mapoly0029s0099' => 'mpo', 'MBI07_g24742_MAGBIO' => 'mbi', 'MBI10_g27988_MAGBIO' => 'mbi', 'MBI11_g13057_MAGBIO' => 'mbi', 'MD02G1137200' => 'mdo', 'MD06G1137200' => 'mdo', 'MD07G1122300' => 'mdo', 'MD09G1078200' => 'mdo', 'MD13G1123700' => 'mdo', 'MD14G1151900' => 'mdo', 'MD17G1030900' => 'mdo', 'MD17G1068200' => 'mdo', 'MD17G1068600' => 'mdo', 'Medtr3g077540' => 'mtr', 'Medtr4g105530' => 'mtr', 'Medtr8g076580' => 'mtr', 'Medtr8g076590' => 'mtr', 'Medtr8g096410' => 'mtr', 'MELO3C016411.2' => 'cme', 'MELO3C017780.2' => 'cme', 'MELO3C022560.2' => 'cme', 'MELO3C026187.2' => 'cme', 'MELO3C026286.2' => 'cme', 'MELO3C032854.2' => 'cme', 'Migut.H02495' => 'egut', 'Migut.I00561' => 'egut', 'Migut.K01015' => 'egut', 'Migut.K01016' => 'egut', 'Migut.L00743' => 'egut', 'Migut.L00744' => 'egut', 'Migut.L00746' => 'egut', 'Migut.L00798' => 'egut', 'Migut.L00799' => 'egut', 'Migut.N02096' => 'egut', 'MSTRG.11259' => 'ama', 'MSTRG.23142' => 'ama', 'MSTRG.2499' => 'ama', 'Nitab4.5_0000003g0730' => 'nta', 'Nitab4.5_0000137g0020' => 'nta', 'Nitab4.5_0000721g0210' => 'nta', 'Nitab4.5_0000723g0050' => 'nta', 'Nitab4.5_0000913g0070' => 'nta', 'Nitab4.5_0001332g0040' => 'nta', 'Nitab4.5_0001771g0050' => 'nta', 'Nitab4.5_0001918g0050' => 'nta', 'Nitab4.5_0002686g0030' => 'nta', 'Nitab4.5_0003156g0020' => 'nta', 'Nitab4.5_0003383g0040' => 'nta', 'Nitab4.5_0003918g0010' => 'nta', 'Nitab4.5_0006760g0010' => 'nta', 'Nn1g05981' => 'nnu', 'Nn1g06288' => 'nnu', 'Nn3g16371' => 'nnu', 'Nn3g16786' => 'nnu', 'Nn4g22232' => 'nnu', 'Oeu005144.1' => 'oeu', 'Oeu005145.1' => 'oeu', 'Oeu011348.1' => 'oeu', 'Oeu016415.1' => 'oeu', 'Oeu023501.1' => 'oeu', 'Oeu044473.1' => 'oeu', 'Oeu048892.2' => 'oeu', 'Os01g0549200' => 'osa', 'Os02g0469300' => 'osa', 'Os04g0311100' => 'osa', 'Os06g0474900' => 'osa', 'Os10g0181700' => 'osa', 'Os11g0454800' => 'osa', 'Peaxi162Scf00037g00714' => 'pax', 'Peaxi162Scf00084g01217' => 'pax', 'Peaxi162Scf00257g00217' => 'pax', 'Peaxi162Scf00516g00215' => 'pax', 'Peaxi162Scf00689g00123' => 'pax', 'PGR044G2719' => 'pgr', 'PGR083G1360' => 'pgr', 'PGR102G2849' => 'pgr', 'PGR119G2534' => 'pgr', 'PGSC0003DMG400003538' => 'stu', 'PGSC0003DMG400028138' => 'stu', 'PGSC0003DMG400031732' => 'stu', 'PGSC0003DMG400038165' => 'stu', 'Phvul.002G284600' => 'pvu', 'Phvul.003G258200' => 'pvu', 'Phvul.009G176500' => 'pvu', 'Potri.003G167201' => 'ptr', 'Potri.005G118400' => 'ptr', 'Potri.012G089000' => 'ptr', 'Potri.012G102800' => 'ptr', 'Potri.015G079400' => 'ptr', 'Potri.015G100900' => 'ptr', 'Pp3c14_9810' => 'ppa', 'Pp3c15_10450' => 'ppa', 'Pp3c20_19150' => 'ppa', 'Pp3c23_12740' => 'ppa', 'Pp3c23_6310' => 'ppa', 'Pp3c24_3720' => 'ppa', 'Pp3c27_2580' => 'ppa', 'Pp3c9_8990' => 'ppa', 'PRCOL_00002854' => 'pco', 'Prupe.1G221200' => 'ppe', 'Prupe.3G289000' => 'ppe', 'Prupe.5G147000' => 'ppe', 'Prupe.6G157300' => 'ppe', 'Prupe.7G163400' => 'ppe', 'Psat0s2177g0040' => 'psa', 'Psat3g174760' => 'psa', 'Psat3g192160' => 'psa', 'Psat4g058520' => 'psa', 'Psat4g096840' => 'psa', 'Psat7g037320' => 'psa', 'PSO017G1274' => 'pso', 'PSO017G5166' => 'pso', 'PSO063G4558' => 'pso', 'PSO170G4458' => 'pso', 'PSO170G5005' => 'pso', 'PSO210G6156' => 'pso', 'PSO210G6635' => 'pso', 'PSO210G7397' => 'pso', 'PSO210G7700' => 'pso', 'PSO455G0035' => 'pso', 'PSO455G0180' => 'pso', 'PSO478G4515' => 'pso', 'PSO832G1305' => 'pso', 'PSO832G3489' => 'pso', 'QL02p075247' => 'qlo', 'QL03p051148' => 'qlo', 'QL05p010313' => 'qlo', 'QL06p034627' => 'qlo', 'QL10p001889' => 'qlo', 'QL10p010846' => 'qlo', 'RcHm_v2.0_Chr1g0350621' => 'rch', 'RcHm_v2.0_Chr1g0350641' => 'rch', 'RcHm_v2.0_Chr2g0092891' => 'rch', 'RcHm_v2.0_Chr2g0100251' => 'rch', 'RcHm_v2.0_Chr2g0158661' => 'rch', 'RcHm_v2.0_Chr2g0172741' => 'rch', 'RcHm_v2.0_Chr4g0429571' => 'rch', 'RcHm_v2.0_Chr5g0042471' => 'rch', 'RcHm_v2.0_Chr7g0189451' => 'rch', 'Rhsim08G0052000' => 'rsi', 'Rhsim08G0174400' => 'rsi', 'Rhsim08G0193200' => 'rsi', 'Rhsim10G0214800' => 'rsi', 'Rhsim10G0214900' => 'rsi', 'Rhsim10G0215000' => 'rsi', 'Rhsim12G0022900' => 'rsi', 'Rhsim12G0177500' => 'rsi', 'Rhsim12G0177700' => 'rsi', 'Sabra03G0122600' => 'sbr', 'Sabra05G0097400' => 'sbr', 'Sabra12G0064100' => 'sbr', 'Sabra15G0121300' => 'sbr', 'SalBow2G0642' => 'sbo', 'SalBow5G2667' => 'sbo', 'SalBow5G4873' => 'sbo', 'SalBow8G2395' => 'sbo', 'Sc03g0003290' => 'sci', 'Sc10g0010130' => 'sci', 'Sc22g0003650' => 'sci', 'Sed0001603' => 'sed', 'Sed0004259' => 'sed', 'Sed0006789' => 'sed', 'Sed0011838' => 'sed', 'Sed0012964' => 'sed', 'Sed0016383' => 'sed', 'Sed0019010' => 'sed', 'Sed0020188' => 'sed', 'SEGI_04702' => 'sgi', 'SEGI_17231' => 'sgi', 'SEGI_18877' => 'sgi', 'SEGI_25196' => 'sgi', 'SEGI_25515' => 'sgi', 'SEGI_28445' => 'sgi', 'SEGI_37452' => 'sgi', 'SGA_v2.0_scaffold188G40336' => 'sas', 'SGA_v2.0_scaffold228G43247' => 'sas', 'SGA_v2.0_scaffold280G46853' => 'sas', 'SGA_v2.0_scaffold34G13808' => 'sas', 'SGA_v2.0_scaffold40G15576' => 'sas', 'SGA_v2.0_scaffold611G53188' => 'sas', 'SGA_v2.0_scaffold78G25461' => 'sas', 'SGA_v2.0_scaffold90G27888' => 'sas', 'SHI08601' => 'shi', 'SHI08606' => 'shi', 'SHI17117' => 'shi', 'SHI17119' => 'shi', 'SMO118G0201' => 'smo', 'SMO169G0247' => 'smo', 'SMO176G0006' => 'smo', 'SMO176G0015' => 'smo', 'SMO202G0006' => 'smo', 'SMO240G0050' => 'smo', 'SMO286G0009' => 'smo', 'SMO338G0033' => 'smo', 'SMO356G0533' => 'smo', 'SMO364G0382' => 'smo', 'SMO367G0166' => 'smo', 'SMO367G1098' => 'smo', 'Solyc01g009920.3' => 'sly', 'Solyc01g099300.3' => 'sly', 'Solyc02g084700.3' => 'sly', 'Solyc03g097520.3' => 'sly', 'Solyc06g071580.3' => 'sly', 'Solyc10g081760.3' => 'sly', 'Sopen01g005480' => 'spe', 'Sopen01g042850' => 'spe', 'Sopen02g029370' => 'spe', 'Sopen03g028280' => 'spe', 'Sopen06g027870' => 'spe', 'Sopen10g032270' => 'spe', 'Sp5g18180' => 'spa', 'Sp6g12880' => 'spa', 'Sp6g30850' => 'spa', 'Sp7g22960' => 'spa', 'Sp7g34010' => 'spa', 'SpUn1326_0010' => 'spa', 'TAR371G0242' => 'tar', 'TAR622G0638' => 'tar', 'TAR628G1548' => 'tar', 'TAR629G1079' => 'tar', 'TAR629G3413' => 'tar', 'THA.LOC104804249' => 'tha', 'THA.LOC104808315' => 'tha', 'THA.LOC104809238' => 'tha', 'THA.LOC104825484' => 'tha', 'Thecc.01G025500' => 'tca', 'Thecc.03G015800' => 'tca', 'Thecc.03G018000' => 'tca', 'Thecc.03G134800' => 'tca', 'Thecc.04G014700' => 'tca', 'Thhalv10006991m.g' => 'esa', 'Thhalv10012707m.g' => 'esa', 'Thhalv10015739m.g' => 'esa', 'Thhalv10024553m.g' => 'esa', 'Thhalv10024673m.g' => 'esa', 'Thhalv10029187m.g' => 'esa', 'TPR.G12971' => 'tpr', 'TPR.G29396' => 'tpr', 'TPR.G33376' => 'tpr', 'TPR.G35508' => 'tpr', 'TPR.G35516' => 'tpr', 'TPR.G37317' => 'tpr', 'TPR.G37389' => 'tpr', 'TPR.G37523' => 'tpr', 'TPR.G559' => 'tpr', 'TWI14G0070' => 'twi', 'TWI14G0729' => 'twi', 'TWI18G0596' => 'twi', 'TWI39G0780' => 'twi', 'TWI39G0850' => 'twi', 'TWI73G1052' => 'twi', 'unitig_52.g17485' => 'ugi', 'unitig_61.g26355' => 'ugi', 'vmacro01040' => 'vma', 'vmacro16731' => 'vma', 'vmacro18270' => 'vma', 'vmacro19142' => 'vma', 'vmacro19407' => 'vma', 'vmacro19408' => 'vma', 'vmacro21899' => 'vma', 'vmacro21900' => 'vma', 'vmacro21901' => 'vma', 'VMungo0251G0490' => 'vmu', 'VMungo0251G1748' => 'vmu', 'VMungo1309G0421' => 'vmu', 'Zm00001eb086500' => 'zma', 'Zm00001eb150680' => 'zma', 'Zm00001eb162330' => 'zma', 'Zm00001eb203130' => 'zma', 'Zm00001eb369480' => 'zma', 'Zm00001eb382340' => 'zma', 'Zm00001eb416360' => 'zma' ), 'gf_id' => 'HOM05D000902', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000902' ), 'data_identifier' => 'HOM05D000902', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000902', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '663', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02470' => 'bna', 'A01p16260' => 'bna', 'A02p01680' => 'bna', 'A03p16600' => 'bna', 'A03p55660' => 'bna', 'A03p64160' => 'bna', 'A03p64170' => 'bna', 'A08p31900' => 'bna', 'A09p59530' => 'bna', 'A10p08230' => 'bna', 'A10p25090' => 'bna', 'Aa31LG3G7100' => 'aar', 'Aa31LG3G7110' => 'aar', 'Aa31LG6G13160' => 'aar', 'Aa31LG7G10770' => 'aar', 'Aa31LG7G3830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2723' => 'aag', 'Actinidia08045' => 'ach', 'Actinidia08888' => 'ach', 'Actinidia18333' => 'ach', 'Actinidia19334' => 'ach', 'Actinidia25552' => 'ach', 'Actinidia26089' => 'ach', 'Actinidia30615' => 'ach', 'Actinidia30616' => 'ach', 'Actinidia33083' => 'ach', 'Actinidia35762' => 'ach', 'Ah.02g110620' => 'amhyb', 'Ah.11g046390' => 'amhyb', 'AL1G31670' => 'aly', 'AL6G23730' => 'aly', 'AL7G14740' => 'aly', 'AL7G14750' => 'aly', 'AL7G14760' => 'aly', 'AL7G28220' => 'aly', 'AL8G24940' => 'aly', 'Aqoxy3G01665' => 'aox', 'Aqoxy3G02853' => 'aox', 'Aqoxy5G01513' => 'aox', 'Aqoxy5G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8SKA4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ75LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKDA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0LJZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7REX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZP4YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWX7I5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2QKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS0L9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPCD8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q161UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC7XCF' => 'arhy', 'AT1G19100' => 'ath', 'AT4G24970' => 'ath', 'AT4G36270' => 'ath', 'AT4G36280' => 'ath', 'AT4G36290' => 'ath', 'AT5G13130' => 'ath', 'AT5G50780' => 'ath', 'ATR0582G266' => 'atr', 'ATR0661G195' => 'atr', 'ATR1152G031' => 'atr', 'Atru.chr11.2382' => 'acertr', 'Atru.chr12.2337' => 'acertr', 'Atru.chr3.744' => 'acertr', 'Atru.chr6.1870' => 'acertr', 'Atru.chr9.2515' => 'acertr', 'AUR62004120' => 'cqu', 'AUR62005667' => 'cqu', 'AUR62007634' => 'cqu', 'AUR62008186' => 'cqu', 'AUR62008187' => 'cqu', 'AUR62008188' => 'cqu', 'AUR62027954' => 'cqu', 'AUR62028766' => 'cqu', 'AUR62028767' => 'cqu', 'AUR62028768' => 'cqu', 'AUR62028886' => 'cqu', 'AUR62029563' => 'cqu', 'AUR62038832' => 'cqu', 'BcaB01g04149' => 'bca', 'BcaB03g12940' => 'bca', 'BcaB03g13090' => 'bca', 'BcaB03g14466' => 'bca', 'BcaB05g24035' => 'bca', 'BcaC01g06050' => 'bca', 'BcaC04g19148' => 'bca', 'BcaC04g20761' => 'bca', 'BcaC06g32845' => 'bca', 'BcaC07g41274' => 'bca', 'BcaC09g50827' => 'bca', 'BcaNung00741' => 'bca', 'BcaNung00742' => 'bca', 'BcaNung01859' => 'bca', 'BcaNung03985' => 'bca', 'BcaNung03989' => 'bca', 'BcaNung05661' => 'bca', 'BolC1t00257H' => 'bol', 'BolC1t01956H' => 'bol', 'BolC2t06534H' => 'bol', 'BolC3t14334H' => 'bol', 'BolC5t30451H' => 'bol', 'BolC7t45880H' => 'bol', 'BolC7t46586H' => 'bol', 'BolC8t49301H' => 'bol', 'BolC8t51837H' => 'bol', 'BolC9t56822H' => 'bol', 'BolC9t59235H' => 'bol', 'BraA01t00234Z' => 'bra', 'BraA01t01563Z' => 'bra', 'BraA02t05147Z' => 'bra', 'BraA03t10947Z' => 'bra', 'BraA03t14633Z' => 'bra', 'BraA08t35112Z' => 'bra', 'BraA09t41330Z' => 'bra', 'BraA10t44570Z' => 'bra', 'C01p02670' => 'bna', 'C01p20260' => 'bna', 'C02p05890' => 'bna', 'C03p19530' => 'bna', 'C05p17470' => 'bna', 'C07p53900' => 'bna', 'C07p61630' => 'bna', 'C08p16800' => 'bna', 'C08p42810' => 'bna', 'C09p39480' => 'bna', 'C09p63980' => 'bna', 'CAN.G1001.7' => 'can', 'CAN.G1034.55' => 'can', 'CAN.G143.7' => 'can', 'CAN.G3340.1' => 'can', 'CAN.G358.19' => 'can', 'CAN.G373.2' => 'can', 'CAN.G674.16' => 'can', 'CAN.G674.17' => 'can', 'CAN.G674.18' => 'can', 'CAN.G732.2' => 'can', 'CAN.G732.3' => 'can', 'CAN.G993.39' => 'can', 'CANSAT01G2052' => 'cansat', 'CANSAT80G0070' => 'cansat', 'CANSAT80G0483' => 'cansat', 'CANSAT80G0625' => 'cansat', 'CARHR019690' => 'chi', 'CARHR080280' => 'chi', 'CARHR152750' => 'chi', 'CARHR152760' => 'chi', 'CARHR152770' => 'chi', 'CARHR200340' => 'chi', 'CARHR232370' => 'chi', 'CARHR244670' => 'chi', 'CARHR244680' => 'chi', 'CARHR257520' => 'chi', 'Carub.0001s1872' => 'cru', 'Carub.0006s1130' => 'cru', 'Carub.0007s0396' => 'cru', 'Carub.0007s0397' => 'cru', 'Carub.0007s1608' => 'cru', 'Carub.0008s1068' => 'cru', 'Carub.0008s1077' => 'cru', 'Ca_16158_v3' => 'car', 'Ca_17571_v3' => 'car', 'Ca_21936_v3' => 'car', 'Ca_22350_v3' => 'car', 'CBR_g22445' => 'cbr', 'CBR_g26290' => 'cbr', 'Cc04_g09610' => 'ccan', 'Cc04_g12280' => 'ccan', 'Cc07_g10230' => 'ccan', 'CDE02G0093' => 'cde', 'CDE02G0701' => 'cde', 'CDE04G1050' => 'cde', 'CDE05G1833' => 'cde', 'CDE05G3058' => 'cde', 'CDE05G3380' => 'cde', 'CDE06G0536' => 'cde', 'Cfa006923' => 'cfa', 'Cfa009402' => 'cfa', 'Cfa018751' => 'cfa', 'Cfa019164' => 'cfa', 'Cfa022935' => 'cfa', 'Ciclev10019081m.g' => 'ccl', 'Ciclev10025076m.g' => 'ccl', 'Ciclev10030712m.g' => 'ccl', 'Ciclev10033760m.g' => 'ccl', 'CiPaw.05G105600' => 'cil', 'CiPaw.08G136700' => 'cil', 'CiPaw.11G003900' => 'cil', 'CiPaw.11G023700' => 'cil', 'CiPaw.12G003700' => 'cil', 'ClCG06G017100' => 'cla', 'ClCG06G018110' => 'cla', 'ClCG07G008800' => 'cla', 'ClCG07G015330' => 'cla', 'COL.COLO4_13698' => 'col', 'COL.COLO4_16659' => 'col', 'COL.COLO4_21986' => 'col', 'COL.COLO4_24049' => 'col', 'COL.COLO4_29061' => 'col', 'COL.COLO4_29075' => 'col', 'COL.COLO4_30094' => 'col', 'Cpa.g.c33689' => 'cpa', 'Cpa.g.sc108.39' => 'cpa', 'Cpa.g.sc108.41' => 'cpa', 'Cpa.g.sc1163.1' => 'cpa', 'Cpa.g.sc4.155' => 'cpa', 'Cpa.g.sc6.194' => 'cpa', 'CsaV3_1G000340' => 'csa', 'CsaV3_1G001400' => 'csa', 'CsaV3_4G002220' => 'csa', 'CsaV3_4G005370' => 'csa', 'CSS0007487' => 'camsi', 'CSS0008066' => 'camsi', 'CSS0009120' => 'camsi', 'CSS0015512' => 'camsi', 'CSS0022409' => 'camsi', 'CSS0025358' => 'camsi', 'CSS0044547' => 'camsi', 'DCAR_013057' => 'dca', 'DCAR_015058' => 'dca', 'DCAR_016027' => 'dca', 'DCAR_017327' => 'dca', 'DCAR_020743' => 'dca', 'DCAR_026157' => 'dca', 'DCAR_032339' => 'dca', 'DCAR_032340' => 'dca', 'Dinv11200' => 'din', 'Dinv11201' => 'din', 'Dinv20631' => 'din', 'Dinv23182' => 'din', 'Dinv33466' => 'din', 'Dinv33583' => 'din', 'Dinv38565' => 'din', 'Duzib068G0200' => 'dzi', 'Duzib147G0132' => 'dzi', 'Duzib147G0635' => 'dzi', 'Duzib205G1670' => 'dzi', 'Duzib251G0606' => 'dzi', 'ECA232G3336' => 'eca', 'ECA232G3763' => 'eca', 'ECA232G4845' => 'eca', 'ECA234G1607' => 'eca', 'ECA246G0932' => 'eca', 'ECA247G0781' => 'eca', 'ECA247G1932' => 'eca', 'ECA247G2079' => 'eca', 'ECA247G3338' => 'eca', 'ECA247G4115' => 'eca', 'EL10Ac3g06552' => 'bvu', 'EL10Ac5g10721' => 'bvu', 'EL10Ac5g10722' => 'bvu', 'EL10Ac5g10723' => 'bvu', 'EL10Ac5g11361' => 'bvu', 'EL10Ac6g13553' => 'bvu', 'EL10As8g23872' => 'bvu', 'Eucgr.B00250' => 'egr', 'Eucgr.B00251' => 'egr', 'Eucgr.B03533' => 'egr', 'Eucgr.I02381' => 'egr', 'Eucgr.K02700' => 'egr', 'FAN02G0174' => 'fan', 'FAN02G3146' => 'fan', 'FAN04G1672' => 'fan', 'FAN04G2273' => 'fan', 'FAN05G2791' => 'fan', 'FAN05G4035' => 'fan', 'FAN07G0834' => 'fan', 'FAN08G1198' => 'fan', 'FAN09G4182' => 'fan', 'FAN12G0496' => 'fan', 'FAN13G1027' => 'fan', 'FAN13G2951' => 'fan', 'FAN14G0705' => 'fan', 'FAN14G0720' => 'fan', 'FAN17G0201' => 'fan', 'FAN17G2665' => 'fan', 'FAN18G1456' => 'fan', 'FAN18G1525' => 'fan', 'FAN18G3500' => 'fan', 'FAN28G2670' => 'fan', 'FvH4_1g12391' => 'fve', 'FvH4_4g23220' => 'fve', 'FvH4_5g08810' => 'fve', 'FvH4_5g28960' => 'fve', 'FvH4_6g42820' => 'fve', 'FvH4_6g51110' => 'fve', 'Glyma.02G051802' => 'gma', 'Glyma.04G185300' => 'gma', 'Glyma.05G202900' => 'gma', 'Glyma.08G010300' => 'gma', 'Glyma.16G131900' => 'gma', 'Glyma.17G087900' => 'gma', 'Gohir.A07G048600' => 'ghi', 'Gohir.A11G179000' => 'ghi', 'Gohir.A12G140900' => 'ghi', 'Gohir.A12G140950' => 'ghi', 'Gohir.A12G191700' => 'ghi', 'Gohir.A13G086300' => 'ghi', 'Gohir.D07G052900' => 'ghi', 'Gohir.D11G186600' => 'ghi', 'Gohir.D12G145575' => 'ghi', 'Gohir.D12G145650' => 'ghi', 'Gohir.D12G145725' => 'ghi', 'Gohir.D12G194050' => 'ghi', 'Gohir.D13G091800' => 'ghi', 'Gorai.001G055900' => 'gra', 'Gorai.007G198400' => 'gra', 'Gorai.008G157000' => 'gra', 'Gorai.008G157100' => 'gra', 'Gorai.008G208700' => 'gra', 'Gorai.010G138700' => 'gra', 'GSVIVG01000977001' => 'vvi', 'GSVIVG01007708001' => 'vvi', 'GSVIVG01008587001' => 'vvi', 'GSVIVG01018849001' => 'vvi', 'GSVIVG01032432001' => 'vvi', 'HanXRQChr02g0034131' => 'han', 'HanXRQChr02g0035981' => 'han', 'HanXRQChr02g0035991' => 'han', 'HanXRQChr05g0155611' => 'han', 'HanXRQChr05g0155621' => 'han', 'HanXRQChr08g0236501' => 'han', 'HanXRQChr09g0261321' => 'han', 'HanXRQChr09g0272081' => 'han', 'HanXRQChr10g0310741' => 'han', 'HanXRQChr11g0325591' => 'han', 'HanXRQChr12g0385691' => 'han', 'HanXRQChr13g0387801' => 'han', 'HanXRQChr15g0463011' => 'han', 'Haze_03826' => 'cav', 'Haze_03827' => 'cav', 'Haze_07183' => 'cav', 'Haze_07537' => 'cav', 'Haze_07539' => 'cav', 'Haze_12461' => 'cav', 'Haze_16115' => 'cav', 'Haze_16808' => 'cav', 'Haze_18531' => 'cav', 'Hma1.2p1_0046F.1_g026700' => 'hma', 'Hma1.2p1_0046F.1_g026710' => 'hma', 'Hma1.2p1_0168F.1_g074340' => 'hma', 'Hma1.2p1_0266F.1_g107030' => 'hma', 'Hma1.2p1_0266F.1_g107060' => 'hma', 'Hma1.2p1_0275F.1_g110510' => 'hma', 'Hma1.2p1_0592F.1_g185490' => 'hma', 'Hma1.2p1_0592F.1_g185500' => 'hma', 'Hma1.2p1_0592F.1_g185510' => 'hma', 'Hma1.2p1_0592F.1_g185520' => 'hma', 'Hma1.2p1_0592F.1_g185530' => 'hma', 'Hma1.2p1_0818F.1_g223450' => 'hma', 'HPP92_009708' => 'vpl', 'HPP92_009793' => 'vpl', 'HPP92_009796' => 'vpl', 'HPP92_009797' => 'vpl', 'HPP92_014940' => 'vpl', 'HPP92_014988' => 'vpl', 'Hund02463' => 'sun', 'Hund02760' => 'sun', 'Hund05071' => 'sun', 'Hund10108' => 'sun', 'Hund11204' => 'sun', 'Hund14016' => 'sun', 'Hund16464' => 'sun', 'Lalb_Chr09g0333391' => 'lal', 'Lalb_Chr11g0070461' => 'lal', 'Lalb_Chr12g0201671' => 'lal', 'Lalb_Chr13g0297161' => 'lal', 'Lj1g0002823' => 'lja', 'Lj3C1074T6' => 'lonja', 'Lj4A212T28' => 'lonja', 'Lj4g0005516' => 'lja', 'Lj4g0013705' => 'lja', 'Lj4g0027865' => 'lja', 'Lj5C92G16' => 'lonja', 'Lj5C92T12' => 'lonja', 'Lj7C596T3' => 'lonja', 'Lj9A446G59' => 'lonja', 'Lj9A482G21' => 'lonja', 'Lsat_1_v5_gn_1_28261' => 'lsa', 'Lsat_1_v5_gn_1_28281' => 'lsa', 'Lsat_1_v5_gn_1_32721' => 'lsa', 'Lsat_1_v5_gn_4_151760' => 'lsa', 'Lsat_1_v5_gn_4_2120' => 'lsa', 'Lsat_1_v5_gn_4_75761' => 'lsa', 'Lsat_1_v5_gn_5_10920' => 'lsa', 'Manes.02G099900' => 'mes', 'Manes.11G096200' => 'mes', 'Manes.12G007200' => 'mes', 'Manes.14G048300' => 'mes', 'Manes.17G114700' => 'mes', 'Mapoly0002s0070' => 'mpo', 'Mapoly0029s0099' => 'mpo', 'MBI07_g24742_MAGBIO' => 'mbi', 'MBI10_g27988_MAGBIO' => 'mbi', 'MBI11_g13057_MAGBIO' => 'mbi', 'MD02G1137200' => 'mdo', 'MD06G1137200' => 'mdo', 'MD07G1122300' => 'mdo', 'MD09G1078200' => 'mdo', 'MD13G1123700' => 'mdo', 'MD14G1151900' => 'mdo', 'MD17G1030900' => 'mdo', 'MD17G1068200' => 'mdo', 'MD17G1068600' => 'mdo', 'Medtr3g077540' => 'mtr', 'Medtr4g105530' => 'mtr', 'Medtr8g076580' => 'mtr', 'Medtr8g076590' => 'mtr', 'Medtr8g096410' => 'mtr', 'MELO3C016411.2' => 'cme', 'MELO3C017780.2' => 'cme', 'MELO3C022560.2' => 'cme', 'MELO3C026187.2' => 'cme', 'MELO3C026286.2' => 'cme', 'MELO3C032854.2' => 'cme', 'Migut.H02495' => 'egut', 'Migut.I00561' => 'egut', 'Migut.K01015' => 'egut', 'Migut.K01016' => 'egut', 'Migut.L00743' => 'egut', 'Migut.L00744' => 'egut', 'Migut.L00746' => 'egut', 'Migut.L00798' => 'egut', 'Migut.L00799' => 'egut', 'Migut.N02096' => 'egut', 'MSTRG.11259' => 'ama', 'MSTRG.23142' => 'ama', 'MSTRG.2499' => 'ama', 'Nitab4.5_0000003g0730' => 'nta', 'Nitab4.5_0000137g0020' => 'nta', 'Nitab4.5_0000721g0210' => 'nta', 'Nitab4.5_0000723g0050' => 'nta', 'Nitab4.5_0000913g0070' => 'nta', 'Nitab4.5_0001332g0040' => 'nta', 'Nitab4.5_0001771g0050' => 'nta', 'Nitab4.5_0001918g0050' => 'nta', 'Nitab4.5_0002686g0030' => 'nta', 'Nitab4.5_0003156g0020' => 'nta', 'Nitab4.5_0003383g0040' => 'nta', 'Nitab4.5_0003918g0010' => 'nta', 'Nitab4.5_0006760g0010' => 'nta', 'Nn1g05981' => 'nnu', 'Nn1g06288' => 'nnu', 'Nn3g16371' => 'nnu', 'Nn3g16786' => 'nnu', 'Nn4g22232' => 'nnu', 'Oeu005144.1' => 'oeu', 'Oeu005145.1' => 'oeu', 'Oeu011348.1' => 'oeu', 'Oeu016415.1' => 'oeu', 'Oeu023501.1' => 'oeu', 'Oeu044473.1' => 'oeu', 'Oeu048892.2' => 'oeu', 'Os01g0549200' => 'osa', 'Os02g0469300' => 'osa', 'Os04g0311100' => 'osa', 'Os06g0474900' => 'osa', 'Os10g0181700' => 'osa', 'Os11g0454800' => 'osa', 'Peaxi162Scf00037g00714' => 'pax', 'Peaxi162Scf00084g01217' => 'pax', 'Peaxi162Scf00257g00217' => 'pax', 'Peaxi162Scf00516g00215' => 'pax', 'Peaxi162Scf00689g00123' => 'pax', 'PGR044G2719' => 'pgr', 'PGR083G1360' => 'pgr', 'PGR102G2849' => 'pgr', 'PGR119G2534' => 'pgr', 'PGSC0003DMG400003538' => 'stu', 'PGSC0003DMG400028138' => 'stu', 'PGSC0003DMG400031732' => 'stu', 'PGSC0003DMG400038165' => 'stu', 'Phvul.002G284600' => 'pvu', 'Phvul.003G258200' => 'pvu', 'Phvul.009G176500' => 'pvu', 'Potri.003G167201' => 'ptr', 'Potri.005G118400' => 'ptr', 'Potri.012G089000' => 'ptr', 'Potri.012G102800' => 'ptr', 'Potri.015G079400' => 'ptr', 'Potri.015G100900' => 'ptr', 'Pp3c14_9810' => 'ppa', 'Pp3c15_10450' => 'ppa', 'Pp3c20_19150' => 'ppa', 'Pp3c23_12740' => 'ppa', 'Pp3c23_6310' => 'ppa', 'Pp3c24_3720' => 'ppa', 'Pp3c27_2580' => 'ppa', 'Pp3c9_8990' => 'ppa', 'PRCOL_00002854' => 'pco', 'Prupe.1G221200' => 'ppe', 'Prupe.3G289000' => 'ppe', 'Prupe.5G147000' => 'ppe', 'Prupe.6G157300' => 'ppe', 'Prupe.7G163400' => 'ppe', 'Psat0s2177g0040' => 'psa', 'Psat3g174760' => 'psa', 'Psat3g192160' => 'psa', 'Psat4g058520' => 'psa', 'Psat4g096840' => 'psa', 'Psat7g037320' => 'psa', 'PSO017G1274' => 'pso', 'PSO017G5166' => 'pso', 'PSO063G4558' => 'pso', 'PSO170G4458' => 'pso', 'PSO170G5005' => 'pso', 'PSO210G6156' => 'pso', 'PSO210G6635' => 'pso', 'PSO210G7397' => 'pso', 'PSO210G7700' => 'pso', 'PSO455G0035' => 'pso', 'PSO455G0180' => 'pso', 'PSO478G4515' => 'pso', 'PSO832G1305' => 'pso', 'PSO832G3489' => 'pso', 'QL02p075247' => 'qlo', 'QL03p051148' => 'qlo', 'QL05p010313' => 'qlo', 'QL06p034627' => 'qlo', 'QL10p001889' => 'qlo', 'QL10p010846' => 'qlo', 'RcHm_v2.0_Chr1g0350621' => 'rch', 'RcHm_v2.0_Chr1g0350641' => 'rch', 'RcHm_v2.0_Chr2g0092891' => 'rch', 'RcHm_v2.0_Chr2g0100251' => 'rch', 'RcHm_v2.0_Chr2g0158661' => 'rch', 'RcHm_v2.0_Chr2g0172741' => 'rch', 'RcHm_v2.0_Chr4g0429571' => 'rch', 'RcHm_v2.0_Chr5g0042471' => 'rch', 'RcHm_v2.0_Chr7g0189451' => 'rch', 'Rhsim08G0052000' => 'rsi', 'Rhsim08G0174400' => 'rsi', 'Rhsim08G0193200' => 'rsi', 'Rhsim10G0214800' => 'rsi', 'Rhsim10G0214900' => 'rsi', 'Rhsim10G0215000' => 'rsi', 'Rhsim12G0022900' => 'rsi', 'Rhsim12G0177500' => 'rsi', 'Rhsim12G0177700' => 'rsi', 'Sabra03G0122600' => 'sbr', 'Sabra05G0097400' => 'sbr', 'Sabra12G0064100' => 'sbr', 'Sabra15G0121300' => 'sbr', 'SalBow2G0642' => 'sbo', 'SalBow5G2667' => 'sbo', 'SalBow5G4873' => 'sbo', 'SalBow8G2395' => 'sbo', 'Sc03g0003290' => 'sci', 'Sc10g0010130' => 'sci', 'Sc22g0003650' => 'sci', 'Sed0001603' => 'sed', 'Sed0004259' => 'sed', 'Sed0006789' => 'sed', 'Sed0011838' => 'sed', 'Sed0012964' => 'sed', 'Sed0016383' => 'sed', 'Sed0019010' => 'sed', 'Sed0020188' => 'sed', 'SEGI_04702' => 'sgi', 'SEGI_17231' => 'sgi', 'SEGI_18877' => 'sgi', 'SEGI_25196' => 'sgi', 'SEGI_25515' => 'sgi', 'SEGI_28445' => 'sgi', 'SEGI_37452' => 'sgi', 'SGA_v2.0_scaffold188G40336' => 'sas', 'SGA_v2.0_scaffold228G43247' => 'sas', 'SGA_v2.0_scaffold280G46853' => 'sas', 'SGA_v2.0_scaffold34G13808' => 'sas', 'SGA_v2.0_scaffold40G15576' => 'sas', 'SGA_v2.0_scaffold611G53188' => 'sas', 'SGA_v2.0_scaffold78G25461' => 'sas', 'SGA_v2.0_scaffold90G27888' => 'sas', 'SHI08601' => 'shi', 'SHI08606' => 'shi', 'SHI17117' => 'shi', 'SHI17119' => 'shi', 'SMO118G0201' => 'smo', 'SMO169G0247' => 'smo', 'SMO176G0006' => 'smo', 'SMO176G0015' => 'smo', 'SMO202G0006' => 'smo', 'SMO240G0050' => 'smo', 'SMO286G0009' => 'smo', 'SMO338G0033' => 'smo', 'SMO356G0533' => 'smo', 'SMO364G0382' => 'smo', 'SMO367G0166' => 'smo', 'SMO367G1098' => 'smo', 'Solyc01g009920.3' => 'sly', 'Solyc01g099300.3' => 'sly', 'Solyc02g084700.3' => 'sly', 'Solyc03g097520.3' => 'sly', 'Solyc06g071580.3' => 'sly', 'Solyc10g081760.3' => 'sly', 'Sopen01g005480' => 'spe', 'Sopen01g042850' => 'spe', 'Sopen02g029370' => 'spe', 'Sopen03g028280' => 'spe', 'Sopen06g027870' => 'spe', 'Sopen10g032270' => 'spe', 'Sp5g18180' => 'spa', 'Sp6g12880' => 'spa', 'Sp6g30850' => 'spa', 'Sp7g22960' => 'spa', 'Sp7g34010' => 'spa', 'SpUn1326_0010' => 'spa', 'TAR371G0242' => 'tar', 'TAR622G0638' => 'tar', 'TAR628G1548' => 'tar', 'TAR629G1079' => 'tar', 'TAR629G3413' => 'tar', 'THA.LOC104804249' => 'tha', 'THA.LOC104808315' => 'tha', 'THA.LOC104809238' => 'tha', 'THA.LOC104825484' => 'tha', 'Thecc.01G025500' => 'tca', 'Thecc.03G015800' => 'tca', 'Thecc.03G018000' => 'tca', 'Thecc.03G134800' => 'tca', 'Thecc.04G014700' => 'tca', 'Thhalv10006991m.g' => 'esa', 'Thhalv10012707m.g' => 'esa', 'Thhalv10015739m.g' => 'esa', 'Thhalv10024553m.g' => 'esa', 'Thhalv10024673m.g' => 'esa', 'Thhalv10029187m.g' => 'esa', 'TPR.G12971' => 'tpr', 'TPR.G29396' => 'tpr', 'TPR.G33376' => 'tpr', 'TPR.G35508' => 'tpr', 'TPR.G35516' => 'tpr', 'TPR.G37317' => 'tpr', 'TPR.G37389' => 'tpr', 'TPR.G37523' => 'tpr', 'TPR.G559' => 'tpr', 'TWI14G0070' => 'twi', 'TWI14G0729' => 'twi', 'TWI18G0596' => 'twi', 'TWI39G0780' => 'twi', 'TWI39G0850' => 'twi', 'TWI73G1052' => 'twi', 'unitig_52.g17485' => 'ugi', 'unitig_61.g26355' => 'ugi', 'vmacro01040' => 'vma', 'vmacro16731' => 'vma', 'vmacro18270' => 'vma', 'vmacro19142' => 'vma', 'vmacro19407' => 'vma', 'vmacro19408' => 'vma', 'vmacro21899' => 'vma', 'vmacro21900' => 'vma', 'vmacro21901' => 'vma', 'VMungo0251G0490' => 'vmu', 'VMungo0251G1748' => 'vmu', 'VMungo1309G0421' => 'vmu', 'Zm00001eb086500' => 'zma', 'Zm00001eb150680' => 'zma', 'Zm00001eb162330' => 'zma', 'Zm00001eb203130' => 'zma', 'Zm00001eb369480' => 'zma', 'Zm00001eb382340' => 'zma', 'Zm00001eb416360' => 'zma' ) $gf_id = 'HOM05D000902' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000902' ) $data_identifier = 'HOM05D000902' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 13, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 10, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 6, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 9, 'hma' => (int) 12, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 4, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 6, 'ppa' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 6, 'rch' => (int) 9, 'rsi' => (int) 9, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 12, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 3, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416360' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000902', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '663', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02470' => 'bna', 'A01p16260' => 'bna', 'A02p01680' => 'bna', 'A03p16600' => 'bna', 'A03p55660' => 'bna', 'A03p64160' => 'bna', 'A03p64170' => 'bna', 'A08p31900' => 'bna', 'A09p59530' => 'bna', 'A10p08230' => 'bna', 'A10p25090' => 'bna', 'Aa31LG3G7100' => 'aar', 'Aa31LG3G7110' => 'aar', 'Aa31LG6G13160' => 'aar', 'Aa31LG7G10770' => 'aar', 'Aa31LG7G3830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2723' => 'aag', 'Actinidia08045' => 'ach', 'Actinidia08888' => 'ach', 'Actinidia18333' => 'ach', 'Actinidia19334' => 'ach', 'Actinidia25552' => 'ach', 'Actinidia26089' => 'ach', 'Actinidia30615' => 'ach', 'Actinidia30616' => 'ach', 'Actinidia33083' => 'ach', 'Actinidia35762' => 'ach', 'Ah.02g110620' => 'amhyb', 'Ah.11g046390' => 'amhyb', 'AL1G31670' => 'aly', 'AL6G23730' => 'aly', 'AL7G14740' => 'aly', 'AL7G14750' => 'aly', 'AL7G14760' => 'aly', 'AL7G28220' => 'aly', 'AL8G24940' => 'aly', 'Aqoxy3G01665' => 'aox', 'Aqoxy3G02853' => 'aox', 'Aqoxy5G01513' => 'aox', 'Aqoxy5G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8SKA4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ75LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKDA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0LJZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7REX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZP4YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWX7I5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2QKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS0L9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPCD8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q161UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC7XCF' => 'arhy', 'AT1G19100' => 'ath', 'AT4G24970' => 'ath', 'AT4G36270' => 'ath', 'AT4G36280' => 'ath', 'AT4G36290' => 'ath', 'AT5G13130' => 'ath', 'AT5G50780' => 'ath', 'ATR0582G266' => 'atr', 'ATR0661G195' => 'atr', 'ATR1152G031' => 'atr', 'Atru.chr11.2382' => 'acertr', 'Atru.chr12.2337' => 'acertr', 'Atru.chr3.744' => 'acertr', 'Atru.chr6.1870' => 'acertr', 'Atru.chr9.2515' => 'acertr', 'AUR62004120' => 'cqu', 'AUR62005667' => 'cqu', 'AUR62007634' => 'cqu', 'AUR62008186' => 'cqu', 'AUR62008187' => 'cqu', 'AUR62008188' => 'cqu', 'AUR62027954' => 'cqu', 'AUR62028766' => 'cqu', 'AUR62028767' => 'cqu', 'AUR62028768' => 'cqu', 'AUR62028886' => 'cqu', 'AUR62029563' => 'cqu', 'AUR62038832' => 'cqu', 'BcaB01g04149' => 'bca', 'BcaB03g12940' => 'bca', 'BcaB03g13090' => 'bca', 'BcaB03g14466' => 'bca', 'BcaB05g24035' => 'bca', 'BcaC01g06050' => 'bca', 'BcaC04g19148' => 'bca', 'BcaC04g20761' => 'bca', 'BcaC06g32845' => 'bca', 'BcaC07g41274' => 'bca', 'BcaC09g50827' => 'bca', 'BcaNung00741' => 'bca', 'BcaNung00742' => 'bca', 'BcaNung01859' => 'bca', 'BcaNung03985' => 'bca', 'BcaNung03989' => 'bca', 'BcaNung05661' => 'bca', 'BolC1t00257H' => 'bol', 'BolC1t01956H' => 'bol', 'BolC2t06534H' => 'bol', 'BolC3t14334H' => 'bol', 'BolC5t30451H' => 'bol', 'BolC7t45880H' => 'bol', 'BolC7t46586H' => 'bol', 'BolC8t49301H' => 'bol', 'BolC8t51837H' => 'bol', 'BolC9t56822H' => 'bol', 'BolC9t59235H' => 'bol', 'BraA01t00234Z' => 'bra', 'BraA01t01563Z' => 'bra', 'BraA02t05147Z' => 'bra', 'BraA03t10947Z' => 'bra', 'BraA03t14633Z' => 'bra', 'BraA08t35112Z' => 'bra', 'BraA09t41330Z' => 'bra', 'BraA10t44570Z' => 'bra', 'C01p02670' => 'bna', 'C01p20260' => 'bna', 'C02p05890' => 'bna', 'C03p19530' => 'bna', 'C05p17470' => 'bna', 'C07p53900' => 'bna', 'C07p61630' => 'bna', 'C08p16800' => 'bna', 'C08p42810' => 'bna', 'C09p39480' => 'bna', 'C09p63980' => 'bna', 'CAN.G1001.7' => 'can', 'CAN.G1034.55' => 'can', 'CAN.G143.7' => 'can', 'CAN.G3340.1' => 'can', 'CAN.G358.19' => 'can', 'CAN.G373.2' => 'can', 'CAN.G674.16' => 'can', 'CAN.G674.17' => 'can', 'CAN.G674.18' => 'can', 'CAN.G732.2' => 'can', 'CAN.G732.3' => 'can', 'CAN.G993.39' => 'can', 'CANSAT01G2052' => 'cansat', 'CANSAT80G0070' => 'cansat', 'CANSAT80G0483' => 'cansat', 'CANSAT80G0625' => 'cansat', 'CARHR019690' => 'chi', 'CARHR080280' => 'chi', 'CARHR152750' => 'chi', 'CARHR152760' => 'chi', 'CARHR152770' => 'chi', 'CARHR200340' => 'chi', 'CARHR232370' => 'chi', 'CARHR244670' => 'chi', 'CARHR244680' => 'chi', 'CARHR257520' => 'chi', 'Carub.0001s1872' => 'cru', 'Carub.0006s1130' => 'cru', 'Carub.0007s0396' => 'cru', 'Carub.0007s0397' => 'cru', 'Carub.0007s1608' => 'cru', 'Carub.0008s1068' => 'cru', 'Carub.0008s1077' => 'cru', 'Ca_16158_v3' => 'car', 'Ca_17571_v3' => 'car', 'Ca_21936_v3' => 'car', 'Ca_22350_v3' => 'car', 'CBR_g22445' => 'cbr', 'CBR_g26290' => 'cbr', 'Cc04_g09610' => 'ccan', 'Cc04_g12280' => 'ccan', 'Cc07_g10230' => 'ccan', 'CDE02G0093' => 'cde', 'CDE02G0701' => 'cde', 'CDE04G1050' => 'cde', 'CDE05G1833' => 'cde', 'CDE05G3058' => 'cde', 'CDE05G3380' => 'cde', 'CDE06G0536' => 'cde', 'Cfa006923' => 'cfa', 'Cfa009402' => 'cfa', 'Cfa018751' => 'cfa', 'Cfa019164' => 'cfa', 'Cfa022935' => 'cfa', 'Ciclev10019081m.g' => 'ccl', 'Ciclev10025076m.g' => 'ccl', 'Ciclev10030712m.g' => 'ccl', 'Ciclev10033760m.g' => 'ccl', 'CiPaw.05G105600' => 'cil', 'CiPaw.08G136700' => 'cil', 'CiPaw.11G003900' => 'cil', 'CiPaw.11G023700' => 'cil', 'CiPaw.12G003700' => 'cil', 'ClCG06G017100' => 'cla', 'ClCG06G018110' => 'cla', 'ClCG07G008800' => 'cla', 'ClCG07G015330' => 'cla', 'COL.COLO4_13698' => 'col', 'COL.COLO4_16659' => 'col', 'COL.COLO4_21986' => 'col', 'COL.COLO4_24049' => 'col', 'COL.COLO4_29061' => 'col', 'COL.COLO4_29075' => 'col', 'COL.COLO4_30094' => 'col', 'Cpa.g.c33689' => 'cpa', 'Cpa.g.sc108.39' => 'cpa', 'Cpa.g.sc108.41' => 'cpa', 'Cpa.g.sc1163.1' => 'cpa', 'Cpa.g.sc4.155' => 'cpa', 'Cpa.g.sc6.194' => 'cpa', 'CsaV3_1G000340' => 'csa', 'CsaV3_1G001400' => 'csa', 'CsaV3_4G002220' => 'csa', 'CsaV3_4G005370' => 'csa', 'CSS0007487' => 'camsi', 'CSS0008066' => 'camsi', 'CSS0009120' => 'camsi', 'CSS0015512' => 'camsi', 'CSS0022409' => 'camsi', 'CSS0025358' => 'camsi', 'CSS0044547' => 'camsi', 'DCAR_013057' => 'dca', 'DCAR_015058' => 'dca', 'DCAR_016027' => 'dca', 'DCAR_017327' => 'dca', 'DCAR_020743' => 'dca', 'DCAR_026157' => 'dca', 'DCAR_032339' => 'dca', 'DCAR_032340' => 'dca', 'Dinv11200' => 'din', 'Dinv11201' => 'din', 'Dinv20631' => 'din', 'Dinv23182' => 'din', 'Dinv33466' => 'din', 'Dinv33583' => 'din', 'Dinv38565' => 'din', 'Duzib068G0200' => 'dzi', 'Duzib147G0132' => 'dzi', 'Duzib147G0635' => 'dzi', 'Duzib205G1670' => 'dzi', 'Duzib251G0606' => 'dzi', 'ECA232G3336' => 'eca', 'ECA232G3763' => 'eca', 'ECA232G4845' => 'eca', 'ECA234G1607' => 'eca', 'ECA246G0932' => 'eca', 'ECA247G0781' => 'eca', 'ECA247G1932' => 'eca', 'ECA247G2079' => 'eca', 'ECA247G3338' => 'eca', 'ECA247G4115' => 'eca', 'EL10Ac3g06552' => 'bvu', 'EL10Ac5g10721' => 'bvu', 'EL10Ac5g10722' => 'bvu', 'EL10Ac5g10723' => 'bvu', 'EL10Ac5g11361' => 'bvu', 'EL10Ac6g13553' => 'bvu', 'EL10As8g23872' => 'bvu', 'Eucgr.B00250' => 'egr', 'Eucgr.B00251' => 'egr', 'Eucgr.B03533' => 'egr', 'Eucgr.I02381' => 'egr', 'Eucgr.K02700' => 'egr', 'FAN02G0174' => 'fan', 'FAN02G3146' => 'fan', 'FAN04G1672' => 'fan', 'FAN04G2273' => 'fan', 'FAN05G2791' => 'fan', 'FAN05G4035' => 'fan', 'FAN07G0834' => 'fan', 'FAN08G1198' => 'fan', 'FAN09G4182' => 'fan', 'FAN12G0496' => 'fan', 'FAN13G1027' => 'fan', 'FAN13G2951' => 'fan', 'FAN14G0705' => 'fan', 'FAN14G0720' => 'fan', 'FAN17G0201' => 'fan', 'FAN17G2665' => 'fan', 'FAN18G1456' => 'fan', 'FAN18G1525' => 'fan', 'FAN18G3500' => 'fan', 'FAN28G2670' => 'fan', 'FvH4_1g12391' => 'fve', 'FvH4_4g23220' => 'fve', 'FvH4_5g08810' => 'fve', 'FvH4_5g28960' => 'fve', 'FvH4_6g42820' => 'fve', 'FvH4_6g51110' => 'fve', 'Glyma.02G051802' => 'gma', 'Glyma.04G185300' => 'gma', 'Glyma.05G202900' => 'gma', 'Glyma.08G010300' => 'gma', 'Glyma.16G131900' => 'gma', 'Glyma.17G087900' => 'gma', 'Gohir.A07G048600' => 'ghi', 'Gohir.A11G179000' => 'ghi', 'Gohir.A12G140900' => 'ghi', 'Gohir.A12G140950' => 'ghi', 'Gohir.A12G191700' => 'ghi', 'Gohir.A13G086300' => 'ghi', 'Gohir.D07G052900' => 'ghi', 'Gohir.D11G186600' => 'ghi', 'Gohir.D12G145575' => 'ghi', 'Gohir.D12G145650' => 'ghi', 'Gohir.D12G145725' => 'ghi', 'Gohir.D12G194050' => 'ghi', 'Gohir.D13G091800' => 'ghi', 'Gorai.001G055900' => 'gra', 'Gorai.007G198400' => 'gra', 'Gorai.008G157000' => 'gra', 'Gorai.008G157100' => 'gra', 'Gorai.008G208700' => 'gra', 'Gorai.010G138700' => 'gra', 'GSVIVG01000977001' => 'vvi', 'GSVIVG01007708001' => 'vvi', 'GSVIVG01008587001' => 'vvi', 'GSVIVG01018849001' => 'vvi', 'GSVIVG01032432001' => 'vvi', 'HanXRQChr02g0034131' => 'han', 'HanXRQChr02g0035981' => 'han', 'HanXRQChr02g0035991' => 'han', 'HanXRQChr05g0155611' => 'han', 'HanXRQChr05g0155621' => 'han', 'HanXRQChr08g0236501' => 'han', 'HanXRQChr09g0261321' => 'han', 'HanXRQChr09g0272081' => 'han', 'HanXRQChr10g0310741' => 'han', 'HanXRQChr11g0325591' => 'han', 'HanXRQChr12g0385691' => 'han', 'HanXRQChr13g0387801' => 'han', 'HanXRQChr15g0463011' => 'han', 'Haze_03826' => 'cav', 'Haze_03827' => 'cav', 'Haze_07183' => 'cav', 'Haze_07537' => 'cav', 'Haze_07539' => 'cav', 'Haze_12461' => 'cav', 'Haze_16115' => 'cav', 'Haze_16808' => 'cav', 'Haze_18531' => 'cav', 'Hma1.2p1_0046F.1_g026700' => 'hma', 'Hma1.2p1_0046F.1_g026710' => 'hma', 'Hma1.2p1_0168F.1_g074340' => 'hma', 'Hma1.2p1_0266F.1_g107030' => 'hma', 'Hma1.2p1_0266F.1_g107060' => 'hma', 'Hma1.2p1_0275F.1_g110510' => 'hma', 'Hma1.2p1_0592F.1_g185490' => 'hma', 'Hma1.2p1_0592F.1_g185500' => 'hma', 'Hma1.2p1_0592F.1_g185510' => 'hma', 'Hma1.2p1_0592F.1_g185520' => 'hma', 'Hma1.2p1_0592F.1_g185530' => 'hma', 'Hma1.2p1_0818F.1_g223450' => 'hma', 'HPP92_009708' => 'vpl', 'HPP92_009793' => 'vpl', 'HPP92_009796' => 'vpl', 'HPP92_009797' => 'vpl', 'HPP92_014940' => 'vpl', 'HPP92_014988' => 'vpl', 'Hund02463' => 'sun', 'Hund02760' => 'sun', 'Hund05071' => 'sun', 'Hund10108' => 'sun', 'Hund11204' => 'sun', 'Hund14016' => 'sun', 'Hund16464' => 'sun', 'Lalb_Chr09g0333391' => 'lal', 'Lalb_Chr11g0070461' => 'lal', 'Lalb_Chr12g0201671' => 'lal', 'Lalb_Chr13g0297161' => 'lal', 'Lj1g0002823' => 'lja', 'Lj3C1074T6' => 'lonja', 'Lj4A212T28' => 'lonja', 'Lj4g0005516' => 'lja', 'Lj4g0013705' => 'lja', 'Lj4g0027865' => 'lja', 'Lj5C92G16' => 'lonja', 'Lj5C92T12' => 'lonja', 'Lj7C596T3' => 'lonja', 'Lj9A446G59' => 'lonja', 'Lj9A482G21' => 'lonja', 'Lsat_1_v5_gn_1_28261' => 'lsa', 'Lsat_1_v5_gn_1_28281' => 'lsa', 'Lsat_1_v5_gn_1_32721' => 'lsa', 'Lsat_1_v5_gn_4_151760' => 'lsa', 'Lsat_1_v5_gn_4_2120' => 'lsa', 'Lsat_1_v5_gn_4_75761' => 'lsa', 'Lsat_1_v5_gn_5_10920' => 'lsa', 'Manes.02G099900' => 'mes', 'Manes.11G096200' => 'mes', 'Manes.12G007200' => 'mes', 'Manes.14G048300' => 'mes', 'Manes.17G114700' => 'mes', 'Mapoly0002s0070' => 'mpo', 'Mapoly0029s0099' => 'mpo', 'MBI07_g24742_MAGBIO' => 'mbi', 'MBI10_g27988_MAGBIO' => 'mbi', 'MBI11_g13057_MAGBIO' => 'mbi', 'MD02G1137200' => 'mdo', 'MD06G1137200' => 'mdo', 'MD07G1122300' => 'mdo', 'MD09G1078200' => 'mdo', 'MD13G1123700' => 'mdo', 'MD14G1151900' => 'mdo', 'MD17G1030900' => 'mdo', 'MD17G1068200' => 'mdo', 'MD17G1068600' => 'mdo', 'Medtr3g077540' => 'mtr', 'Medtr4g105530' => 'mtr', 'Medtr8g076580' => 'mtr', 'Medtr8g076590' => 'mtr', 'Medtr8g096410' => 'mtr', 'MELO3C016411.2' => 'cme', 'MELO3C017780.2' => 'cme', 'MELO3C022560.2' => 'cme', 'MELO3C026187.2' => 'cme', 'MELO3C026286.2' => 'cme', 'MELO3C032854.2' => 'cme', 'Migut.H02495' => 'egut', 'Migut.I00561' => 'egut', 'Migut.K01015' => 'egut', 'Migut.K01016' => 'egut', 'Migut.L00743' => 'egut', 'Migut.L00744' => 'egut', 'Migut.L00746' => 'egut', 'Migut.L00798' => 'egut', 'Migut.L00799' => 'egut', 'Migut.N02096' => 'egut', 'MSTRG.11259' => 'ama', 'MSTRG.23142' => 'ama', 'MSTRG.2499' => 'ama', 'Nitab4.5_0000003g0730' => 'nta', 'Nitab4.5_0000137g0020' => 'nta', 'Nitab4.5_0000721g0210' => 'nta', 'Nitab4.5_0000723g0050' => 'nta', 'Nitab4.5_0000913g0070' => 'nta', 'Nitab4.5_0001332g0040' => 'nta', 'Nitab4.5_0001771g0050' => 'nta', 'Nitab4.5_0001918g0050' => 'nta', 'Nitab4.5_0002686g0030' => 'nta', 'Nitab4.5_0003156g0020' => 'nta', 'Nitab4.5_0003383g0040' => 'nta', 'Nitab4.5_0003918g0010' => 'nta', 'Nitab4.5_0006760g0010' => 'nta', 'Nn1g05981' => 'nnu', 'Nn1g06288' => 'nnu', 'Nn3g16371' => 'nnu', 'Nn3g16786' => 'nnu', 'Nn4g22232' => 'nnu', 'Oeu005144.1' => 'oeu', 'Oeu005145.1' => 'oeu', 'Oeu011348.1' => 'oeu', 'Oeu016415.1' => 'oeu', 'Oeu023501.1' => 'oeu', 'Oeu044473.1' => 'oeu', 'Oeu048892.2' => 'oeu', 'Os01g0549200' => 'osa', 'Os02g0469300' => 'osa', 'Os04g0311100' => 'osa', 'Os06g0474900' => 'osa', 'Os10g0181700' => 'osa', 'Os11g0454800' => 'osa', 'Peaxi162Scf00037g00714' => 'pax', 'Peaxi162Scf00084g01217' => 'pax', 'Peaxi162Scf00257g00217' => 'pax', 'Peaxi162Scf00516g00215' => 'pax', 'Peaxi162Scf00689g00123' => 'pax', 'PGR044G2719' => 'pgr', 'PGR083G1360' => 'pgr', 'PGR102G2849' => 'pgr', 'PGR119G2534' => 'pgr', 'PGSC0003DMG400003538' => 'stu', 'PGSC0003DMG400028138' => 'stu', 'PGSC0003DMG400031732' => 'stu', 'PGSC0003DMG400038165' => 'stu', 'Phvul.002G284600' => 'pvu', 'Phvul.003G258200' => 'pvu', 'Phvul.009G176500' => 'pvu', 'Potri.003G167201' => 'ptr', 'Potri.005G118400' => 'ptr', 'Potri.012G089000' => 'ptr', 'Potri.012G102800' => 'ptr', 'Potri.015G079400' => 'ptr', 'Potri.015G100900' => 'ptr', 'Pp3c14_9810' => 'ppa', 'Pp3c15_10450' => 'ppa', 'Pp3c20_19150' => 'ppa', 'Pp3c23_12740' => 'ppa', 'Pp3c23_6310' => 'ppa', 'Pp3c24_3720' => 'ppa', 'Pp3c27_2580' => 'ppa', 'Pp3c9_8990' => 'ppa', 'PRCOL_00002854' => 'pco', 'Prupe.1G221200' => 'ppe', 'Prupe.3G289000' => 'ppe', 'Prupe.5G147000' => 'ppe', 'Prupe.6G157300' => 'ppe', 'Prupe.7G163400' => 'ppe', 'Psat0s2177g0040' => 'psa', 'Psat3g174760' => 'psa', 'Psat3g192160' => 'psa', 'Psat4g058520' => 'psa', 'Psat4g096840' => 'psa', 'Psat7g037320' => 'psa', 'PSO017G1274' => 'pso', 'PSO017G5166' => 'pso', 'PSO063G4558' => 'pso', 'PSO170G4458' => 'pso', 'PSO170G5005' => 'pso', 'PSO210G6156' => 'pso', 'PSO210G6635' => 'pso', 'PSO210G7397' => 'pso', 'PSO210G7700' => 'pso', 'PSO455G0035' => 'pso', 'PSO455G0180' => 'pso', 'PSO478G4515' => 'pso', 'PSO832G1305' => 'pso', 'PSO832G3489' => 'pso', 'QL02p075247' => 'qlo', 'QL03p051148' => 'qlo', 'QL05p010313' => 'qlo', 'QL06p034627' => 'qlo', 'QL10p001889' => 'qlo', 'QL10p010846' => 'qlo', 'RcHm_v2.0_Chr1g0350621' => 'rch', 'RcHm_v2.0_Chr1g0350641' => 'rch', 'RcHm_v2.0_Chr2g0092891' => 'rch', 'RcHm_v2.0_Chr2g0100251' => 'rch', 'RcHm_v2.0_Chr2g0158661' => 'rch', 'RcHm_v2.0_Chr2g0172741' => 'rch', 'RcHm_v2.0_Chr4g0429571' => 'rch', 'RcHm_v2.0_Chr5g0042471' => 'rch', 'RcHm_v2.0_Chr7g0189451' => 'rch', 'Rhsim08G0052000' => 'rsi', 'Rhsim08G0174400' => 'rsi', 'Rhsim08G0193200' => 'rsi', 'Rhsim10G0214800' => 'rsi', 'Rhsim10G0214900' => 'rsi', 'Rhsim10G0215000' => 'rsi', 'Rhsim12G0022900' => 'rsi', 'Rhsim12G0177500' => 'rsi', 'Rhsim12G0177700' => 'rsi', 'Sabra03G0122600' => 'sbr', 'Sabra05G0097400' => 'sbr', 'Sabra12G0064100' => 'sbr', 'Sabra15G0121300' => 'sbr', 'SalBow2G0642' => 'sbo', 'SalBow5G2667' => 'sbo', 'SalBow5G4873' => 'sbo', 'SalBow8G2395' => 'sbo', 'Sc03g0003290' => 'sci', 'Sc10g0010130' => 'sci', 'Sc22g0003650' => 'sci', 'Sed0001603' => 'sed', 'Sed0004259' => 'sed', 'Sed0006789' => 'sed', 'Sed0011838' => 'sed', 'Sed0012964' => 'sed', 'Sed0016383' => 'sed', 'Sed0019010' => 'sed', 'Sed0020188' => 'sed', 'SEGI_04702' => 'sgi', 'SEGI_17231' => 'sgi', 'SEGI_18877' => 'sgi', 'SEGI_25196' => 'sgi', 'SEGI_25515' => 'sgi', 'SEGI_28445' => 'sgi', 'SEGI_37452' => 'sgi', 'SGA_v2.0_scaffold188G40336' => 'sas', 'SGA_v2.0_scaffold228G43247' => 'sas', 'SGA_v2.0_scaffold280G46853' => 'sas', 'SGA_v2.0_scaffold34G13808' => 'sas', 'SGA_v2.0_scaffold40G15576' => 'sas', 'SGA_v2.0_scaffold611G53188' => 'sas', 'SGA_v2.0_scaffold78G25461' => 'sas', 'SGA_v2.0_scaffold90G27888' => 'sas', 'SHI08601' => 'shi', 'SHI08606' => 'shi', 'SHI17117' => 'shi', 'SHI17119' => 'shi', 'SMO118G0201' => 'smo', 'SMO169G0247' => 'smo', 'SMO176G0006' => 'smo', 'SMO176G0015' => 'smo', 'SMO202G0006' => 'smo', 'SMO240G0050' => 'smo', 'SMO286G0009' => 'smo', 'SMO338G0033' => 'smo', 'SMO356G0533' => 'smo', 'SMO364G0382' => 'smo', 'SMO367G0166' => 'smo', 'SMO367G1098' => 'smo', 'Solyc01g009920.3' => 'sly', 'Solyc01g099300.3' => 'sly', 'Solyc02g084700.3' => 'sly', 'Solyc03g097520.3' => 'sly', 'Solyc06g071580.3' => 'sly', 'Solyc10g081760.3' => 'sly', 'Sopen01g005480' => 'spe', 'Sopen01g042850' => 'spe', 'Sopen02g029370' => 'spe', 'Sopen03g028280' => 'spe', 'Sopen06g027870' => 'spe', 'Sopen10g032270' => 'spe', 'Sp5g18180' => 'spa', 'Sp6g12880' => 'spa', 'Sp6g30850' => 'spa', 'Sp7g22960' => 'spa', 'Sp7g34010' => 'spa', 'SpUn1326_0010' => 'spa', 'TAR371G0242' => 'tar', 'TAR622G0638' => 'tar', 'TAR628G1548' => 'tar', 'TAR629G1079' => 'tar', 'TAR629G3413' => 'tar', 'THA.LOC104804249' => 'tha', 'THA.LOC104808315' => 'tha', 'THA.LOC104809238' => 'tha', 'THA.LOC104825484' => 'tha', 'Thecc.01G025500' => 'tca', 'Thecc.03G015800' => 'tca', 'Thecc.03G018000' => 'tca', 'Thecc.03G134800' => 'tca', 'Thecc.04G014700' => 'tca', 'Thhalv10006991m.g' => 'esa', 'Thhalv10012707m.g' => 'esa', 'Thhalv10015739m.g' => 'esa', 'Thhalv10024553m.g' => 'esa', 'Thhalv10024673m.g' => 'esa', 'Thhalv10029187m.g' => 'esa', 'TPR.G12971' => 'tpr', 'TPR.G29396' => 'tpr', 'TPR.G33376' => 'tpr', 'TPR.G35508' => 'tpr', 'TPR.G35516' => 'tpr', 'TPR.G37317' => 'tpr', 'TPR.G37389' => 'tpr', 'TPR.G37523' => 'tpr', 'TPR.G559' => 'tpr', 'TWI14G0070' => 'twi', 'TWI14G0729' => 'twi', 'TWI18G0596' => 'twi', 'TWI39G0780' => 'twi', 'TWI39G0850' => 'twi', 'TWI73G1052' => 'twi', 'unitig_52.g17485' => 'ugi', 'unitig_61.g26355' => 'ugi', 'vmacro01040' => 'vma', 'vmacro16731' => 'vma', 'vmacro18270' => 'vma', 'vmacro19142' => 'vma', 'vmacro19407' => 'vma', 'vmacro19408' => 'vma', 'vmacro21899' => 'vma', 'vmacro21900' => 'vma', 'vmacro21901' => 'vma', 'VMungo0251G0490' => 'vmu', 'VMungo0251G1748' => 'vmu', 'VMungo1309G0421' => 'vmu', 'Zm00001eb086500' => 'zma', 'Zm00001eb150680' => 'zma', 'Zm00001eb162330' => 'zma', 'Zm00001eb203130' => 'zma', 'Zm00001eb369480' => 'zma', 'Zm00001eb382340' => 'zma', 'Zm00001eb416360' => 'zma' ), 'gf_id' => 'HOM05D000902', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000902' ), 'data_identifier' => 'HOM05D000902', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000902', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '663', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02470' => 'bna', 'A01p16260' => 'bna', 'A02p01680' => 'bna', 'A03p16600' => 'bna', 'A03p55660' => 'bna', 'A03p64160' => 'bna', 'A03p64170' => 'bna', 'A08p31900' => 'bna', 'A09p59530' => 'bna', 'A10p08230' => 'bna', 'A10p25090' => 'bna', 'Aa31LG3G7100' => 'aar', 'Aa31LG3G7110' => 'aar', 'Aa31LG6G13160' => 'aar', 'Aa31LG7G10770' => 'aar', 'Aa31LG7G3830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2723' => 'aag', 'Actinidia08045' => 'ach', 'Actinidia08888' => 'ach', 'Actinidia18333' => 'ach', 'Actinidia19334' => 'ach', 'Actinidia25552' => 'ach', 'Actinidia26089' => 'ach', 'Actinidia30615' => 'ach', 'Actinidia30616' => 'ach', 'Actinidia33083' => 'ach', 'Actinidia35762' => 'ach', 'Ah.02g110620' => 'amhyb', 'Ah.11g046390' => 'amhyb', 'AL1G31670' => 'aly', 'AL6G23730' => 'aly', 'AL7G14740' => 'aly', 'AL7G14750' => 'aly', 'AL7G14760' => 'aly', 'AL7G28220' => 'aly', 'AL8G24940' => 'aly', 'Aqoxy3G01665' => 'aox', 'Aqoxy3G02853' => 'aox', 'Aqoxy5G01513' => 'aox', 'Aqoxy5G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8SKA4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ75LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKDA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0LJZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7REX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZP4YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWX7I5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2QKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS0L9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPCD8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q161UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC7XCF' => 'arhy', 'AT1G19100' => 'ath', 'AT4G24970' => 'ath', 'AT4G36270' => 'ath', 'AT4G36280' => 'ath', 'AT4G36290' => 'ath', 'AT5G13130' => 'ath', 'AT5G50780' => 'ath', 'ATR0582G266' => 'atr', 'ATR0661G195' => 'atr', 'ATR1152G031' => 'atr', 'Atru.chr11.2382' => 'acertr', 'Atru.chr12.2337' => 'acertr', 'Atru.chr3.744' => 'acertr', 'Atru.chr6.1870' => 'acertr', 'Atru.chr9.2515' => 'acertr', 'AUR62004120' => 'cqu', 'AUR62005667' => 'cqu', 'AUR62007634' => 'cqu', 'AUR62008186' => 'cqu', 'AUR62008187' => 'cqu', 'AUR62008188' => 'cqu', 'AUR62027954' => 'cqu', 'AUR62028766' => 'cqu', 'AUR62028767' => 'cqu', 'AUR62028768' => 'cqu', 'AUR62028886' => 'cqu', 'AUR62029563' => 'cqu', 'AUR62038832' => 'cqu', 'BcaB01g04149' => 'bca', 'BcaB03g12940' => 'bca', 'BcaB03g13090' => 'bca', 'BcaB03g14466' => 'bca', 'BcaB05g24035' => 'bca', 'BcaC01g06050' => 'bca', 'BcaC04g19148' => 'bca', 'BcaC04g20761' => 'bca', 'BcaC06g32845' => 'bca', 'BcaC07g41274' => 'bca', 'BcaC09g50827' => 'bca', 'BcaNung00741' => 'bca', 'BcaNung00742' => 'bca', 'BcaNung01859' => 'bca', 'BcaNung03985' => 'bca', 'BcaNung03989' => 'bca', 'BcaNung05661' => 'bca', 'BolC1t00257H' => 'bol', 'BolC1t01956H' => 'bol', 'BolC2t06534H' => 'bol', 'BolC3t14334H' => 'bol', 'BolC5t30451H' => 'bol', 'BolC7t45880H' => 'bol', 'BolC7t46586H' => 'bol', 'BolC8t49301H' => 'bol', 'BolC8t51837H' => 'bol', 'BolC9t56822H' => 'bol', 'BolC9t59235H' => 'bol', 'BraA01t00234Z' => 'bra', 'BraA01t01563Z' => 'bra', 'BraA02t05147Z' => 'bra', 'BraA03t10947Z' => 'bra', 'BraA03t14633Z' => 'bra', 'BraA08t35112Z' => 'bra', 'BraA09t41330Z' => 'bra', 'BraA10t44570Z' => 'bra', 'C01p02670' => 'bna', 'C01p20260' => 'bna', 'C02p05890' => 'bna', 'C03p19530' => 'bna', 'C05p17470' => 'bna', 'C07p53900' => 'bna', 'C07p61630' => 'bna', 'C08p16800' => 'bna', 'C08p42810' => 'bna', 'C09p39480' => 'bna', 'C09p63980' => 'bna', 'CAN.G1001.7' => 'can', 'CAN.G1034.55' => 'can', 'CAN.G143.7' => 'can', 'CAN.G3340.1' => 'can', 'CAN.G358.19' => 'can', 'CAN.G373.2' => 'can', 'CAN.G674.16' => 'can', 'CAN.G674.17' => 'can', 'CAN.G674.18' => 'can', 'CAN.G732.2' => 'can', 'CAN.G732.3' => 'can', 'CAN.G993.39' => 'can', 'CANSAT01G2052' => 'cansat', 'CANSAT80G0070' => 'cansat', 'CANSAT80G0483' => 'cansat', 'CANSAT80G0625' => 'cansat', 'CARHR019690' => 'chi', 'CARHR080280' => 'chi', 'CARHR152750' => 'chi', 'CARHR152760' => 'chi', 'CARHR152770' => 'chi', 'CARHR200340' => 'chi', 'CARHR232370' => 'chi', 'CARHR244670' => 'chi', 'CARHR244680' => 'chi', 'CARHR257520' => 'chi', 'Carub.0001s1872' => 'cru', 'Carub.0006s1130' => 'cru', 'Carub.0007s0396' => 'cru', 'Carub.0007s0397' => 'cru', 'Carub.0007s1608' => 'cru', 'Carub.0008s1068' => 'cru', 'Carub.0008s1077' => 'cru', 'Ca_16158_v3' => 'car', 'Ca_17571_v3' => 'car', 'Ca_21936_v3' => 'car', 'Ca_22350_v3' => 'car', 'CBR_g22445' => 'cbr', 'CBR_g26290' => 'cbr', 'Cc04_g09610' => 'ccan', 'Cc04_g12280' => 'ccan', 'Cc07_g10230' => 'ccan', 'CDE02G0093' => 'cde', 'CDE02G0701' => 'cde', 'CDE04G1050' => 'cde', 'CDE05G1833' => 'cde', 'CDE05G3058' => 'cde', 'CDE05G3380' => 'cde', 'CDE06G0536' => 'cde', 'Cfa006923' => 'cfa', 'Cfa009402' => 'cfa', 'Cfa018751' => 'cfa', 'Cfa019164' => 'cfa', 'Cfa022935' => 'cfa', 'Ciclev10019081m.g' => 'ccl', 'Ciclev10025076m.g' => 'ccl', 'Ciclev10030712m.g' => 'ccl', 'Ciclev10033760m.g' => 'ccl', 'CiPaw.05G105600' => 'cil', 'CiPaw.08G136700' => 'cil', 'CiPaw.11G003900' => 'cil', 'CiPaw.11G023700' => 'cil', 'CiPaw.12G003700' => 'cil', 'ClCG06G017100' => 'cla', 'ClCG06G018110' => 'cla', 'ClCG07G008800' => 'cla', 'ClCG07G015330' => 'cla', 'COL.COLO4_13698' => 'col', 'COL.COLO4_16659' => 'col', 'COL.COLO4_21986' => 'col', 'COL.COLO4_24049' => 'col', 'COL.COLO4_29061' => 'col', 'COL.COLO4_29075' => 'col', 'COL.COLO4_30094' => 'col', 'Cpa.g.c33689' => 'cpa', 'Cpa.g.sc108.39' => 'cpa', 'Cpa.g.sc108.41' => 'cpa', 'Cpa.g.sc1163.1' => 'cpa', 'Cpa.g.sc4.155' => 'cpa', 'Cpa.g.sc6.194' => 'cpa', 'CsaV3_1G000340' => 'csa', 'CsaV3_1G001400' => 'csa', 'CsaV3_4G002220' => 'csa', 'CsaV3_4G005370' => 'csa', 'CSS0007487' => 'camsi', 'CSS0008066' => 'camsi', 'CSS0009120' => 'camsi', 'CSS0015512' => 'camsi', 'CSS0022409' => 'camsi', 'CSS0025358' => 'camsi', 'CSS0044547' => 'camsi', 'DCAR_013057' => 'dca', 'DCAR_015058' => 'dca', 'DCAR_016027' => 'dca', 'DCAR_017327' => 'dca', 'DCAR_020743' => 'dca', 'DCAR_026157' => 'dca', 'DCAR_032339' => 'dca', 'DCAR_032340' => 'dca', 'Dinv11200' => 'din', 'Dinv11201' => 'din', 'Dinv20631' => 'din', 'Dinv23182' => 'din', 'Dinv33466' => 'din', 'Dinv33583' => 'din', 'Dinv38565' => 'din', 'Duzib068G0200' => 'dzi', 'Duzib147G0132' => 'dzi', 'Duzib147G0635' => 'dzi', 'Duzib205G1670' => 'dzi', 'Duzib251G0606' => 'dzi', 'ECA232G3336' => 'eca', 'ECA232G3763' => 'eca', 'ECA232G4845' => 'eca', 'ECA234G1607' => 'eca', 'ECA246G0932' => 'eca', 'ECA247G0781' => 'eca', 'ECA247G1932' => 'eca', 'ECA247G2079' => 'eca', 'ECA247G3338' => 'eca', 'ECA247G4115' => 'eca', 'EL10Ac3g06552' => 'bvu', 'EL10Ac5g10721' => 'bvu', 'EL10Ac5g10722' => 'bvu', 'EL10Ac5g10723' => 'bvu', 'EL10Ac5g11361' => 'bvu', 'EL10Ac6g13553' => 'bvu', 'EL10As8g23872' => 'bvu', 'Eucgr.B00250' => 'egr', 'Eucgr.B00251' => 'egr', 'Eucgr.B03533' => 'egr', 'Eucgr.I02381' => 'egr', 'Eucgr.K02700' => 'egr', 'FAN02G0174' => 'fan', 'FAN02G3146' => 'fan', 'FAN04G1672' => 'fan', 'FAN04G2273' => 'fan', 'FAN05G2791' => 'fan', 'FAN05G4035' => 'fan', 'FAN07G0834' => 'fan', 'FAN08G1198' => 'fan', 'FAN09G4182' => 'fan', 'FAN12G0496' => 'fan', 'FAN13G1027' => 'fan', 'FAN13G2951' => 'fan', 'FAN14G0705' => 'fan', 'FAN14G0720' => 'fan', 'FAN17G0201' => 'fan', 'FAN17G2665' => 'fan', 'FAN18G1456' => 'fan', 'FAN18G1525' => 'fan', 'FAN18G3500' => 'fan', 'FAN28G2670' => 'fan', 'FvH4_1g12391' => 'fve', 'FvH4_4g23220' => 'fve', 'FvH4_5g08810' => 'fve', 'FvH4_5g28960' => 'fve', 'FvH4_6g42820' => 'fve', 'FvH4_6g51110' => 'fve', 'Glyma.02G051802' => 'gma', 'Glyma.04G185300' => 'gma', 'Glyma.05G202900' => 'gma', 'Glyma.08G010300' => 'gma', 'Glyma.16G131900' => 'gma', 'Glyma.17G087900' => 'gma', 'Gohir.A07G048600' => 'ghi', 'Gohir.A11G179000' => 'ghi', 'Gohir.A12G140900' => 'ghi', 'Gohir.A12G140950' => 'ghi', 'Gohir.A12G191700' => 'ghi', 'Gohir.A13G086300' => 'ghi', 'Gohir.D07G052900' => 'ghi', 'Gohir.D11G186600' => 'ghi', 'Gohir.D12G145575' => 'ghi', 'Gohir.D12G145650' => 'ghi', 'Gohir.D12G145725' => 'ghi', 'Gohir.D12G194050' => 'ghi', 'Gohir.D13G091800' => 'ghi', 'Gorai.001G055900' => 'gra', 'Gorai.007G198400' => 'gra', 'Gorai.008G157000' => 'gra', 'Gorai.008G157100' => 'gra', 'Gorai.008G208700' => 'gra', 'Gorai.010G138700' => 'gra', 'GSVIVG01000977001' => 'vvi', 'GSVIVG01007708001' => 'vvi', 'GSVIVG01008587001' => 'vvi', 'GSVIVG01018849001' => 'vvi', 'GSVIVG01032432001' => 'vvi', 'HanXRQChr02g0034131' => 'han', 'HanXRQChr02g0035981' => 'han', 'HanXRQChr02g0035991' => 'han', 'HanXRQChr05g0155611' => 'han', 'HanXRQChr05g0155621' => 'han', 'HanXRQChr08g0236501' => 'han', 'HanXRQChr09g0261321' => 'han', 'HanXRQChr09g0272081' => 'han', 'HanXRQChr10g0310741' => 'han', 'HanXRQChr11g0325591' => 'han', 'HanXRQChr12g0385691' => 'han', 'HanXRQChr13g0387801' => 'han', 'HanXRQChr15g0463011' => 'han', 'Haze_03826' => 'cav', 'Haze_03827' => 'cav', 'Haze_07183' => 'cav', 'Haze_07537' => 'cav', 'Haze_07539' => 'cav', 'Haze_12461' => 'cav', 'Haze_16115' => 'cav', 'Haze_16808' => 'cav', 'Haze_18531' => 'cav', 'Hma1.2p1_0046F.1_g026700' => 'hma', 'Hma1.2p1_0046F.1_g026710' => 'hma', 'Hma1.2p1_0168F.1_g074340' => 'hma', 'Hma1.2p1_0266F.1_g107030' => 'hma', 'Hma1.2p1_0266F.1_g107060' => 'hma', 'Hma1.2p1_0275F.1_g110510' => 'hma', 'Hma1.2p1_0592F.1_g185490' => 'hma', 'Hma1.2p1_0592F.1_g185500' => 'hma', 'Hma1.2p1_0592F.1_g185510' => 'hma', 'Hma1.2p1_0592F.1_g185520' => 'hma', 'Hma1.2p1_0592F.1_g185530' => 'hma', 'Hma1.2p1_0818F.1_g223450' => 'hma', 'HPP92_009708' => 'vpl', 'HPP92_009793' => 'vpl', 'HPP92_009796' => 'vpl', 'HPP92_009797' => 'vpl', 'HPP92_014940' => 'vpl', 'HPP92_014988' => 'vpl', 'Hund02463' => 'sun', 'Hund02760' => 'sun', 'Hund05071' => 'sun', 'Hund10108' => 'sun', 'Hund11204' => 'sun', 'Hund14016' => 'sun', 'Hund16464' => 'sun', 'Lalb_Chr09g0333391' => 'lal', 'Lalb_Chr11g0070461' => 'lal', 'Lalb_Chr12g0201671' => 'lal', 'Lalb_Chr13g0297161' => 'lal', 'Lj1g0002823' => 'lja', 'Lj3C1074T6' => 'lonja', 'Lj4A212T28' => 'lonja', 'Lj4g0005516' => 'lja', 'Lj4g0013705' => 'lja', 'Lj4g0027865' => 'lja', 'Lj5C92G16' => 'lonja', 'Lj5C92T12' => 'lonja', 'Lj7C596T3' => 'lonja', 'Lj9A446G59' => 'lonja', 'Lj9A482G21' => 'lonja', 'Lsat_1_v5_gn_1_28261' => 'lsa', 'Lsat_1_v5_gn_1_28281' => 'lsa', 'Lsat_1_v5_gn_1_32721' => 'lsa', 'Lsat_1_v5_gn_4_151760' => 'lsa', 'Lsat_1_v5_gn_4_2120' => 'lsa', 'Lsat_1_v5_gn_4_75761' => 'lsa', 'Lsat_1_v5_gn_5_10920' => 'lsa', 'Manes.02G099900' => 'mes', 'Manes.11G096200' => 'mes', 'Manes.12G007200' => 'mes', 'Manes.14G048300' => 'mes', 'Manes.17G114700' => 'mes', 'Mapoly0002s0070' => 'mpo', 'Mapoly0029s0099' => 'mpo', 'MBI07_g24742_MAGBIO' => 'mbi', 'MBI10_g27988_MAGBIO' => 'mbi', 'MBI11_g13057_MAGBIO' => 'mbi', 'MD02G1137200' => 'mdo', 'MD06G1137200' => 'mdo', 'MD07G1122300' => 'mdo', 'MD09G1078200' => 'mdo', 'MD13G1123700' => 'mdo', 'MD14G1151900' => 'mdo', 'MD17G1030900' => 'mdo', 'MD17G1068200' => 'mdo', 'MD17G1068600' => 'mdo', 'Medtr3g077540' => 'mtr', 'Medtr4g105530' => 'mtr', 'Medtr8g076580' => 'mtr', 'Medtr8g076590' => 'mtr', 'Medtr8g096410' => 'mtr', 'MELO3C016411.2' => 'cme', 'MELO3C017780.2' => 'cme', 'MELO3C022560.2' => 'cme', 'MELO3C026187.2' => 'cme', 'MELO3C026286.2' => 'cme', 'MELO3C032854.2' => 'cme', 'Migut.H02495' => 'egut', 'Migut.I00561' => 'egut', 'Migut.K01015' => 'egut', 'Migut.K01016' => 'egut', 'Migut.L00743' => 'egut', 'Migut.L00744' => 'egut', 'Migut.L00746' => 'egut', 'Migut.L00798' => 'egut', 'Migut.L00799' => 'egut', 'Migut.N02096' => 'egut', 'MSTRG.11259' => 'ama', 'MSTRG.23142' => 'ama', 'MSTRG.2499' => 'ama', 'Nitab4.5_0000003g0730' => 'nta', 'Nitab4.5_0000137g0020' => 'nta', 'Nitab4.5_0000721g0210' => 'nta', 'Nitab4.5_0000723g0050' => 'nta', 'Nitab4.5_0000913g0070' => 'nta', 'Nitab4.5_0001332g0040' => 'nta', 'Nitab4.5_0001771g0050' => 'nta', 'Nitab4.5_0001918g0050' => 'nta', 'Nitab4.5_0002686g0030' => 'nta', 'Nitab4.5_0003156g0020' => 'nta', 'Nitab4.5_0003383g0040' => 'nta', 'Nitab4.5_0003918g0010' => 'nta', 'Nitab4.5_0006760g0010' => 'nta', 'Nn1g05981' => 'nnu', 'Nn1g06288' => 'nnu', 'Nn3g16371' => 'nnu', 'Nn3g16786' => 'nnu', 'Nn4g22232' => 'nnu', 'Oeu005144.1' => 'oeu', 'Oeu005145.1' => 'oeu', 'Oeu011348.1' => 'oeu', 'Oeu016415.1' => 'oeu', 'Oeu023501.1' => 'oeu', 'Oeu044473.1' => 'oeu', 'Oeu048892.2' => 'oeu', 'Os01g0549200' => 'osa', 'Os02g0469300' => 'osa', 'Os04g0311100' => 'osa', 'Os06g0474900' => 'osa', 'Os10g0181700' => 'osa', 'Os11g0454800' => 'osa', 'Peaxi162Scf00037g00714' => 'pax', 'Peaxi162Scf00084g01217' => 'pax', 'Peaxi162Scf00257g00217' => 'pax', 'Peaxi162Scf00516g00215' => 'pax', 'Peaxi162Scf00689g00123' => 'pax', 'PGR044G2719' => 'pgr', 'PGR083G1360' => 'pgr', 'PGR102G2849' => 'pgr', 'PGR119G2534' => 'pgr', 'PGSC0003DMG400003538' => 'stu', 'PGSC0003DMG400028138' => 'stu', 'PGSC0003DMG400031732' => 'stu', 'PGSC0003DMG400038165' => 'stu', 'Phvul.002G284600' => 'pvu', 'Phvul.003G258200' => 'pvu', 'Phvul.009G176500' => 'pvu', 'Potri.003G167201' => 'ptr', 'Potri.005G118400' => 'ptr', 'Potri.012G089000' => 'ptr', 'Potri.012G102800' => 'ptr', 'Potri.015G079400' => 'ptr', 'Potri.015G100900' => 'ptr', 'Pp3c14_9810' => 'ppa', 'Pp3c15_10450' => 'ppa', 'Pp3c20_19150' => 'ppa', 'Pp3c23_12740' => 'ppa', 'Pp3c23_6310' => 'ppa', 'Pp3c24_3720' => 'ppa', 'Pp3c27_2580' => 'ppa', 'Pp3c9_8990' => 'ppa', 'PRCOL_00002854' => 'pco', 'Prupe.1G221200' => 'ppe', 'Prupe.3G289000' => 'ppe', 'Prupe.5G147000' => 'ppe', 'Prupe.6G157300' => 'ppe', 'Prupe.7G163400' => 'ppe', 'Psat0s2177g0040' => 'psa', 'Psat3g174760' => 'psa', 'Psat3g192160' => 'psa', 'Psat4g058520' => 'psa', 'Psat4g096840' => 'psa', 'Psat7g037320' => 'psa', 'PSO017G1274' => 'pso', 'PSO017G5166' => 'pso', 'PSO063G4558' => 'pso', 'PSO170G4458' => 'pso', 'PSO170G5005' => 'pso', 'PSO210G6156' => 'pso', 'PSO210G6635' => 'pso', 'PSO210G7397' => 'pso', 'PSO210G7700' => 'pso', 'PSO455G0035' => 'pso', 'PSO455G0180' => 'pso', 'PSO478G4515' => 'pso', 'PSO832G1305' => 'pso', 'PSO832G3489' => 'pso', 'QL02p075247' => 'qlo', 'QL03p051148' => 'qlo', 'QL05p010313' => 'qlo', 'QL06p034627' => 'qlo', 'QL10p001889' => 'qlo', 'QL10p010846' => 'qlo', 'RcHm_v2.0_Chr1g0350621' => 'rch', 'RcHm_v2.0_Chr1g0350641' => 'rch', 'RcHm_v2.0_Chr2g0092891' => 'rch', 'RcHm_v2.0_Chr2g0100251' => 'rch', 'RcHm_v2.0_Chr2g0158661' => 'rch', 'RcHm_v2.0_Chr2g0172741' => 'rch', 'RcHm_v2.0_Chr4g0429571' => 'rch', 'RcHm_v2.0_Chr5g0042471' => 'rch', 'RcHm_v2.0_Chr7g0189451' => 'rch', 'Rhsim08G0052000' => 'rsi', 'Rhsim08G0174400' => 'rsi', 'Rhsim08G0193200' => 'rsi', 'Rhsim10G0214800' => 'rsi', 'Rhsim10G0214900' => 'rsi', 'Rhsim10G0215000' => 'rsi', 'Rhsim12G0022900' => 'rsi', 'Rhsim12G0177500' => 'rsi', 'Rhsim12G0177700' => 'rsi', 'Sabra03G0122600' => 'sbr', 'Sabra05G0097400' => 'sbr', 'Sabra12G0064100' => 'sbr', 'Sabra15G0121300' => 'sbr', 'SalBow2G0642' => 'sbo', 'SalBow5G2667' => 'sbo', 'SalBow5G4873' => 'sbo', 'SalBow8G2395' => 'sbo', 'Sc03g0003290' => 'sci', 'Sc10g0010130' => 'sci', 'Sc22g0003650' => 'sci', 'Sed0001603' => 'sed', 'Sed0004259' => 'sed', 'Sed0006789' => 'sed', 'Sed0011838' => 'sed', 'Sed0012964' => 'sed', 'Sed0016383' => 'sed', 'Sed0019010' => 'sed', 'Sed0020188' => 'sed', 'SEGI_04702' => 'sgi', 'SEGI_17231' => 'sgi', 'SEGI_18877' => 'sgi', 'SEGI_25196' => 'sgi', 'SEGI_25515' => 'sgi', 'SEGI_28445' => 'sgi', 'SEGI_37452' => 'sgi', 'SGA_v2.0_scaffold188G40336' => 'sas', 'SGA_v2.0_scaffold228G43247' => 'sas', 'SGA_v2.0_scaffold280G46853' => 'sas', 'SGA_v2.0_scaffold34G13808' => 'sas', 'SGA_v2.0_scaffold40G15576' => 'sas', 'SGA_v2.0_scaffold611G53188' => 'sas', 'SGA_v2.0_scaffold78G25461' => 'sas', 'SGA_v2.0_scaffold90G27888' => 'sas', 'SHI08601' => 'shi', 'SHI08606' => 'shi', 'SHI17117' => 'shi', 'SHI17119' => 'shi', 'SMO118G0201' => 'smo', 'SMO169G0247' => 'smo', 'SMO176G0006' => 'smo', 'SMO176G0015' => 'smo', 'SMO202G0006' => 'smo', 'SMO240G0050' => 'smo', 'SMO286G0009' => 'smo', 'SMO338G0033' => 'smo', 'SMO356G0533' => 'smo', 'SMO364G0382' => 'smo', 'SMO367G0166' => 'smo', 'SMO367G1098' => 'smo', 'Solyc01g009920.3' => 'sly', 'Solyc01g099300.3' => 'sly', 'Solyc02g084700.3' => 'sly', 'Solyc03g097520.3' => 'sly', 'Solyc06g071580.3' => 'sly', 'Solyc10g081760.3' => 'sly', 'Sopen01g005480' => 'spe', 'Sopen01g042850' => 'spe', 'Sopen02g029370' => 'spe', 'Sopen03g028280' => 'spe', 'Sopen06g027870' => 'spe', 'Sopen10g032270' => 'spe', 'Sp5g18180' => 'spa', 'Sp6g12880' => 'spa', 'Sp6g30850' => 'spa', 'Sp7g22960' => 'spa', 'Sp7g34010' => 'spa', 'SpUn1326_0010' => 'spa', 'TAR371G0242' => 'tar', 'TAR622G0638' => 'tar', 'TAR628G1548' => 'tar', 'TAR629G1079' => 'tar', 'TAR629G3413' => 'tar', 'THA.LOC104804249' => 'tha', 'THA.LOC104808315' => 'tha', 'THA.LOC104809238' => 'tha', 'THA.LOC104825484' => 'tha', 'Thecc.01G025500' => 'tca', 'Thecc.03G015800' => 'tca', 'Thecc.03G018000' => 'tca', 'Thecc.03G134800' => 'tca', 'Thecc.04G014700' => 'tca', 'Thhalv10006991m.g' => 'esa', 'Thhalv10012707m.g' => 'esa', 'Thhalv10015739m.g' => 'esa', 'Thhalv10024553m.g' => 'esa', 'Thhalv10024673m.g' => 'esa', 'Thhalv10029187m.g' => 'esa', 'TPR.G12971' => 'tpr', 'TPR.G29396' => 'tpr', 'TPR.G33376' => 'tpr', 'TPR.G35508' => 'tpr', 'TPR.G35516' => 'tpr', 'TPR.G37317' => 'tpr', 'TPR.G37389' => 'tpr', 'TPR.G37523' => 'tpr', 'TPR.G559' => 'tpr', 'TWI14G0070' => 'twi', 'TWI14G0729' => 'twi', 'TWI18G0596' => 'twi', 'TWI39G0780' => 'twi', 'TWI39G0850' => 'twi', 'TWI73G1052' => 'twi', 'unitig_52.g17485' => 'ugi', 'unitig_61.g26355' => 'ugi', 'vmacro01040' => 'vma', 'vmacro16731' => 'vma', 'vmacro18270' => 'vma', 'vmacro19142' => 'vma', 'vmacro19407' => 'vma', 'vmacro19408' => 'vma', 'vmacro21899' => 'vma', 'vmacro21900' => 'vma', 'vmacro21901' => 'vma', 'VMungo0251G0490' => 'vmu', 'VMungo0251G1748' => 'vmu', 'VMungo1309G0421' => 'vmu', 'Zm00001eb086500' => 'zma', 'Zm00001eb150680' => 'zma', 'Zm00001eb162330' => 'zma', 'Zm00001eb203130' => 'zma', 'Zm00001eb369480' => 'zma', 'Zm00001eb382340' => 'zma', 'Zm00001eb416360' => 'zma' ) $gf_id = 'HOM05D000902' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000902' ) $data_identifier = 'HOM05D000902' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 13, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 10, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 6, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 9, 'hma' => (int) 12, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 4, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 6, 'ppa' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 6, 'rch' => (int) 9, 'rsi' => (int) 9, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 12, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 3, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416360' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000902', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '663', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02470' => 'bna', 'A01p16260' => 'bna', 'A02p01680' => 'bna', 'A03p16600' => 'bna', 'A03p55660' => 'bna', 'A03p64160' => 'bna', 'A03p64170' => 'bna', 'A08p31900' => 'bna', 'A09p59530' => 'bna', 'A10p08230' => 'bna', 'A10p25090' => 'bna', 'Aa31LG3G7100' => 'aar', 'Aa31LG3G7110' => 'aar', 'Aa31LG6G13160' => 'aar', 'Aa31LG7G10770' => 'aar', 'Aa31LG7G3830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2723' => 'aag', 'Actinidia08045' => 'ach', 'Actinidia08888' => 'ach', 'Actinidia18333' => 'ach', 'Actinidia19334' => 'ach', 'Actinidia25552' => 'ach', 'Actinidia26089' => 'ach', 'Actinidia30615' => 'ach', 'Actinidia30616' => 'ach', 'Actinidia33083' => 'ach', 'Actinidia35762' => 'ach', 'Ah.02g110620' => 'amhyb', 'Ah.11g046390' => 'amhyb', 'AL1G31670' => 'aly', 'AL6G23730' => 'aly', 'AL7G14740' => 'aly', 'AL7G14750' => 'aly', 'AL7G14760' => 'aly', 'AL7G28220' => 'aly', 'AL8G24940' => 'aly', 'Aqoxy3G01665' => 'aox', 'Aqoxy3G02853' => 'aox', 'Aqoxy5G01513' => 'aox', 'Aqoxy5G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8SKA4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ75LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKDA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0LJZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7REX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZP4YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWX7I5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2QKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS0L9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPCD8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q161UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC7XCF' => 'arhy', 'AT1G19100' => 'ath', 'AT4G24970' => 'ath', 'AT4G36270' => 'ath', 'AT4G36280' => 'ath', 'AT4G36290' => 'ath', 'AT5G13130' => 'ath', 'AT5G50780' => 'ath', 'ATR0582G266' => 'atr', 'ATR0661G195' => 'atr', 'ATR1152G031' => 'atr', 'Atru.chr11.2382' => 'acertr', 'Atru.chr12.2337' => 'acertr', 'Atru.chr3.744' => 'acertr', 'Atru.chr6.1870' => 'acertr', 'Atru.chr9.2515' => 'acertr', 'AUR62004120' => 'cqu', 'AUR62005667' => 'cqu', 'AUR62007634' => 'cqu', 'AUR62008186' => 'cqu', 'AUR62008187' => 'cqu', 'AUR62008188' => 'cqu', 'AUR62027954' => 'cqu', 'AUR62028766' => 'cqu', 'AUR62028767' => 'cqu', 'AUR62028768' => 'cqu', 'AUR62028886' => 'cqu', 'AUR62029563' => 'cqu', 'AUR62038832' => 'cqu', 'BcaB01g04149' => 'bca', 'BcaB03g12940' => 'bca', 'BcaB03g13090' => 'bca', 'BcaB03g14466' => 'bca', 'BcaB05g24035' => 'bca', 'BcaC01g06050' => 'bca', 'BcaC04g19148' => 'bca', 'BcaC04g20761' => 'bca', 'BcaC06g32845' => 'bca', 'BcaC07g41274' => 'bca', 'BcaC09g50827' => 'bca', 'BcaNung00741' => 'bca', 'BcaNung00742' => 'bca', 'BcaNung01859' => 'bca', 'BcaNung03985' => 'bca', 'BcaNung03989' => 'bca', 'BcaNung05661' => 'bca', 'BolC1t00257H' => 'bol', 'BolC1t01956H' => 'bol', 'BolC2t06534H' => 'bol', 'BolC3t14334H' => 'bol', 'BolC5t30451H' => 'bol', 'BolC7t45880H' => 'bol', 'BolC7t46586H' => 'bol', 'BolC8t49301H' => 'bol', 'BolC8t51837H' => 'bol', 'BolC9t56822H' => 'bol', 'BolC9t59235H' => 'bol', 'BraA01t00234Z' => 'bra', 'BraA01t01563Z' => 'bra', 'BraA02t05147Z' => 'bra', 'BraA03t10947Z' => 'bra', 'BraA03t14633Z' => 'bra', 'BraA08t35112Z' => 'bra', 'BraA09t41330Z' => 'bra', 'BraA10t44570Z' => 'bra', 'C01p02670' => 'bna', 'C01p20260' => 'bna', 'C02p05890' => 'bna', 'C03p19530' => 'bna', 'C05p17470' => 'bna', 'C07p53900' => 'bna', 'C07p61630' => 'bna', 'C08p16800' => 'bna', 'C08p42810' => 'bna', 'C09p39480' => 'bna', 'C09p63980' => 'bna', 'CAN.G1001.7' => 'can', 'CAN.G1034.55' => 'can', 'CAN.G143.7' => 'can', 'CAN.G3340.1' => 'can', 'CAN.G358.19' => 'can', 'CAN.G373.2' => 'can', 'CAN.G674.16' => 'can', 'CAN.G674.17' => 'can', 'CAN.G674.18' => 'can', 'CAN.G732.2' => 'can', 'CAN.G732.3' => 'can', 'CAN.G993.39' => 'can', 'CANSAT01G2052' => 'cansat', 'CANSAT80G0070' => 'cansat', 'CANSAT80G0483' => 'cansat', 'CANSAT80G0625' => 'cansat', 'CARHR019690' => 'chi', 'CARHR080280' => 'chi', 'CARHR152750' => 'chi', 'CARHR152760' => 'chi', 'CARHR152770' => 'chi', 'CARHR200340' => 'chi', 'CARHR232370' => 'chi', 'CARHR244670' => 'chi', 'CARHR244680' => 'chi', 'CARHR257520' => 'chi', 'Carub.0001s1872' => 'cru', 'Carub.0006s1130' => 'cru', 'Carub.0007s0396' => 'cru', 'Carub.0007s0397' => 'cru', 'Carub.0007s1608' => 'cru', 'Carub.0008s1068' => 'cru', 'Carub.0008s1077' => 'cru', 'Ca_16158_v3' => 'car', 'Ca_17571_v3' => 'car', 'Ca_21936_v3' => 'car', 'Ca_22350_v3' => 'car', 'CBR_g22445' => 'cbr', 'CBR_g26290' => 'cbr', 'Cc04_g09610' => 'ccan', 'Cc04_g12280' => 'ccan', 'Cc07_g10230' => 'ccan', 'CDE02G0093' => 'cde', 'CDE02G0701' => 'cde', 'CDE04G1050' => 'cde', 'CDE05G1833' => 'cde', 'CDE05G3058' => 'cde', 'CDE05G3380' => 'cde', 'CDE06G0536' => 'cde', 'Cfa006923' => 'cfa', 'Cfa009402' => 'cfa', 'Cfa018751' => 'cfa', 'Cfa019164' => 'cfa', 'Cfa022935' => 'cfa', 'Ciclev10019081m.g' => 'ccl', 'Ciclev10025076m.g' => 'ccl', 'Ciclev10030712m.g' => 'ccl', 'Ciclev10033760m.g' => 'ccl', 'CiPaw.05G105600' => 'cil', 'CiPaw.08G136700' => 'cil', 'CiPaw.11G003900' => 'cil', 'CiPaw.11G023700' => 'cil', 'CiPaw.12G003700' => 'cil', 'ClCG06G017100' => 'cla', 'ClCG06G018110' => 'cla', 'ClCG07G008800' => 'cla', 'ClCG07G015330' => 'cla', 'COL.COLO4_13698' => 'col', 'COL.COLO4_16659' => 'col', 'COL.COLO4_21986' => 'col', 'COL.COLO4_24049' => 'col', 'COL.COLO4_29061' => 'col', 'COL.COLO4_29075' => 'col', 'COL.COLO4_30094' => 'col', 'Cpa.g.c33689' => 'cpa', 'Cpa.g.sc108.39' => 'cpa', 'Cpa.g.sc108.41' => 'cpa', 'Cpa.g.sc1163.1' => 'cpa', 'Cpa.g.sc4.155' => 'cpa', 'Cpa.g.sc6.194' => 'cpa', 'CsaV3_1G000340' => 'csa', 'CsaV3_1G001400' => 'csa', 'CsaV3_4G002220' => 'csa', 'CsaV3_4G005370' => 'csa', 'CSS0007487' => 'camsi', 'CSS0008066' => 'camsi', 'CSS0009120' => 'camsi', 'CSS0015512' => 'camsi', 'CSS0022409' => 'camsi', 'CSS0025358' => 'camsi', 'CSS0044547' => 'camsi', 'DCAR_013057' => 'dca', 'DCAR_015058' => 'dca', 'DCAR_016027' => 'dca', 'DCAR_017327' => 'dca', 'DCAR_020743' => 'dca', 'DCAR_026157' => 'dca', 'DCAR_032339' => 'dca', 'DCAR_032340' => 'dca', 'Dinv11200' => 'din', 'Dinv11201' => 'din', 'Dinv20631' => 'din', 'Dinv23182' => 'din', 'Dinv33466' => 'din', 'Dinv33583' => 'din', 'Dinv38565' => 'din', 'Duzib068G0200' => 'dzi', 'Duzib147G0132' => 'dzi', 'Duzib147G0635' => 'dzi', 'Duzib205G1670' => 'dzi', 'Duzib251G0606' => 'dzi', 'ECA232G3336' => 'eca', 'ECA232G3763' => 'eca', 'ECA232G4845' => 'eca', 'ECA234G1607' => 'eca', 'ECA246G0932' => 'eca', 'ECA247G0781' => 'eca', 'ECA247G1932' => 'eca', 'ECA247G2079' => 'eca', 'ECA247G3338' => 'eca', 'ECA247G4115' => 'eca', 'EL10Ac3g06552' => 'bvu', 'EL10Ac5g10721' => 'bvu', 'EL10Ac5g10722' => 'bvu', 'EL10Ac5g10723' => 'bvu', 'EL10Ac5g11361' => 'bvu', 'EL10Ac6g13553' => 'bvu', 'EL10As8g23872' => 'bvu', 'Eucgr.B00250' => 'egr', 'Eucgr.B00251' => 'egr', 'Eucgr.B03533' => 'egr', 'Eucgr.I02381' => 'egr', 'Eucgr.K02700' => 'egr', 'FAN02G0174' => 'fan', 'FAN02G3146' => 'fan', 'FAN04G1672' => 'fan', 'FAN04G2273' => 'fan', 'FAN05G2791' => 'fan', 'FAN05G4035' => 'fan', 'FAN07G0834' => 'fan', 'FAN08G1198' => 'fan', 'FAN09G4182' => 'fan', 'FAN12G0496' => 'fan', 'FAN13G1027' => 'fan', 'FAN13G2951' => 'fan', 'FAN14G0705' => 'fan', 'FAN14G0720' => 'fan', 'FAN17G0201' => 'fan', 'FAN17G2665' => 'fan', 'FAN18G1456' => 'fan', 'FAN18G1525' => 'fan', 'FAN18G3500' => 'fan', 'FAN28G2670' => 'fan', 'FvH4_1g12391' => 'fve', 'FvH4_4g23220' => 'fve', 'FvH4_5g08810' => 'fve', 'FvH4_5g28960' => 'fve', 'FvH4_6g42820' => 'fve', 'FvH4_6g51110' => 'fve', 'Glyma.02G051802' => 'gma', 'Glyma.04G185300' => 'gma', 'Glyma.05G202900' => 'gma', 'Glyma.08G010300' => 'gma', 'Glyma.16G131900' => 'gma', 'Glyma.17G087900' => 'gma', 'Gohir.A07G048600' => 'ghi', 'Gohir.A11G179000' => 'ghi', 'Gohir.A12G140900' => 'ghi', 'Gohir.A12G140950' => 'ghi', 'Gohir.A12G191700' => 'ghi', 'Gohir.A13G086300' => 'ghi', 'Gohir.D07G052900' => 'ghi', 'Gohir.D11G186600' => 'ghi', 'Gohir.D12G145575' => 'ghi', 'Gohir.D12G145650' => 'ghi', 'Gohir.D12G145725' => 'ghi', 'Gohir.D12G194050' => 'ghi', 'Gohir.D13G091800' => 'ghi', 'Gorai.001G055900' => 'gra', 'Gorai.007G198400' => 'gra', 'Gorai.008G157000' => 'gra', 'Gorai.008G157100' => 'gra', 'Gorai.008G208700' => 'gra', 'Gorai.010G138700' => 'gra', 'GSVIVG01000977001' => 'vvi', 'GSVIVG01007708001' => 'vvi', 'GSVIVG01008587001' => 'vvi', 'GSVIVG01018849001' => 'vvi', 'GSVIVG01032432001' => 'vvi', 'HanXRQChr02g0034131' => 'han', 'HanXRQChr02g0035981' => 'han', 'HanXRQChr02g0035991' => 'han', 'HanXRQChr05g0155611' => 'han', 'HanXRQChr05g0155621' => 'han', 'HanXRQChr08g0236501' => 'han', 'HanXRQChr09g0261321' => 'han', 'HanXRQChr09g0272081' => 'han', 'HanXRQChr10g0310741' => 'han', 'HanXRQChr11g0325591' => 'han', 'HanXRQChr12g0385691' => 'han', 'HanXRQChr13g0387801' => 'han', 'HanXRQChr15g0463011' => 'han', 'Haze_03826' => 'cav', 'Haze_03827' => 'cav', 'Haze_07183' => 'cav', 'Haze_07537' => 'cav', 'Haze_07539' => 'cav', 'Haze_12461' => 'cav', 'Haze_16115' => 'cav', 'Haze_16808' => 'cav', 'Haze_18531' => 'cav', 'Hma1.2p1_0046F.1_g026700' => 'hma', 'Hma1.2p1_0046F.1_g026710' => 'hma', 'Hma1.2p1_0168F.1_g074340' => 'hma', 'Hma1.2p1_0266F.1_g107030' => 'hma', 'Hma1.2p1_0266F.1_g107060' => 'hma', 'Hma1.2p1_0275F.1_g110510' => 'hma', 'Hma1.2p1_0592F.1_g185490' => 'hma', 'Hma1.2p1_0592F.1_g185500' => 'hma', 'Hma1.2p1_0592F.1_g185510' => 'hma', 'Hma1.2p1_0592F.1_g185520' => 'hma', 'Hma1.2p1_0592F.1_g185530' => 'hma', 'Hma1.2p1_0818F.1_g223450' => 'hma', 'HPP92_009708' => 'vpl', 'HPP92_009793' => 'vpl', 'HPP92_009796' => 'vpl', 'HPP92_009797' => 'vpl', 'HPP92_014940' => 'vpl', 'HPP92_014988' => 'vpl', 'Hund02463' => 'sun', 'Hund02760' => 'sun', 'Hund05071' => 'sun', 'Hund10108' => 'sun', 'Hund11204' => 'sun', 'Hund14016' => 'sun', 'Hund16464' => 'sun', 'Lalb_Chr09g0333391' => 'lal', 'Lalb_Chr11g0070461' => 'lal', 'Lalb_Chr12g0201671' => 'lal', 'Lalb_Chr13g0297161' => 'lal', 'Lj1g0002823' => 'lja', 'Lj3C1074T6' => 'lonja', 'Lj4A212T28' => 'lonja', 'Lj4g0005516' => 'lja', 'Lj4g0013705' => 'lja', 'Lj4g0027865' => 'lja', 'Lj5C92G16' => 'lonja', 'Lj5C92T12' => 'lonja', 'Lj7C596T3' => 'lonja', 'Lj9A446G59' => 'lonja', 'Lj9A482G21' => 'lonja', 'Lsat_1_v5_gn_1_28261' => 'lsa', 'Lsat_1_v5_gn_1_28281' => 'lsa', 'Lsat_1_v5_gn_1_32721' => 'lsa', 'Lsat_1_v5_gn_4_151760' => 'lsa', 'Lsat_1_v5_gn_4_2120' => 'lsa', 'Lsat_1_v5_gn_4_75761' => 'lsa', 'Lsat_1_v5_gn_5_10920' => 'lsa', 'Manes.02G099900' => 'mes', 'Manes.11G096200' => 'mes', 'Manes.12G007200' => 'mes', 'Manes.14G048300' => 'mes', 'Manes.17G114700' => 'mes', 'Mapoly0002s0070' => 'mpo', 'Mapoly0029s0099' => 'mpo', 'MBI07_g24742_MAGBIO' => 'mbi', 'MBI10_g27988_MAGBIO' => 'mbi', 'MBI11_g13057_MAGBIO' => 'mbi', 'MD02G1137200' => 'mdo', 'MD06G1137200' => 'mdo', 'MD07G1122300' => 'mdo', 'MD09G1078200' => 'mdo', 'MD13G1123700' => 'mdo', 'MD14G1151900' => 'mdo', 'MD17G1030900' => 'mdo', 'MD17G1068200' => 'mdo', 'MD17G1068600' => 'mdo', 'Medtr3g077540' => 'mtr', 'Medtr4g105530' => 'mtr', 'Medtr8g076580' => 'mtr', 'Medtr8g076590' => 'mtr', 'Medtr8g096410' => 'mtr', 'MELO3C016411.2' => 'cme', 'MELO3C017780.2' => 'cme', 'MELO3C022560.2' => 'cme', 'MELO3C026187.2' => 'cme', 'MELO3C026286.2' => 'cme', 'MELO3C032854.2' => 'cme', 'Migut.H02495' => 'egut', 'Migut.I00561' => 'egut', 'Migut.K01015' => 'egut', 'Migut.K01016' => 'egut', 'Migut.L00743' => 'egut', 'Migut.L00744' => 'egut', 'Migut.L00746' => 'egut', 'Migut.L00798' => 'egut', 'Migut.L00799' => 'egut', 'Migut.N02096' => 'egut', 'MSTRG.11259' => 'ama', 'MSTRG.23142' => 'ama', 'MSTRG.2499' => 'ama', 'Nitab4.5_0000003g0730' => 'nta', 'Nitab4.5_0000137g0020' => 'nta', 'Nitab4.5_0000721g0210' => 'nta', 'Nitab4.5_0000723g0050' => 'nta', 'Nitab4.5_0000913g0070' => 'nta', 'Nitab4.5_0001332g0040' => 'nta', 'Nitab4.5_0001771g0050' => 'nta', 'Nitab4.5_0001918g0050' => 'nta', 'Nitab4.5_0002686g0030' => 'nta', 'Nitab4.5_0003156g0020' => 'nta', 'Nitab4.5_0003383g0040' => 'nta', 'Nitab4.5_0003918g0010' => 'nta', 'Nitab4.5_0006760g0010' => 'nta', 'Nn1g05981' => 'nnu', 'Nn1g06288' => 'nnu', 'Nn3g16371' => 'nnu', 'Nn3g16786' => 'nnu', 'Nn4g22232' => 'nnu', 'Oeu005144.1' => 'oeu', 'Oeu005145.1' => 'oeu', 'Oeu011348.1' => 'oeu', 'Oeu016415.1' => 'oeu', 'Oeu023501.1' => 'oeu', 'Oeu044473.1' => 'oeu', 'Oeu048892.2' => 'oeu', 'Os01g0549200' => 'osa', 'Os02g0469300' => 'osa', 'Os04g0311100' => 'osa', 'Os06g0474900' => 'osa', 'Os10g0181700' => 'osa', 'Os11g0454800' => 'osa', 'Peaxi162Scf00037g00714' => 'pax', 'Peaxi162Scf00084g01217' => 'pax', 'Peaxi162Scf00257g00217' => 'pax', 'Peaxi162Scf00516g00215' => 'pax', 'Peaxi162Scf00689g00123' => 'pax', 'PGR044G2719' => 'pgr', 'PGR083G1360' => 'pgr', 'PGR102G2849' => 'pgr', 'PGR119G2534' => 'pgr', 'PGSC0003DMG400003538' => 'stu', 'PGSC0003DMG400028138' => 'stu', 'PGSC0003DMG400031732' => 'stu', 'PGSC0003DMG400038165' => 'stu', 'Phvul.002G284600' => 'pvu', 'Phvul.003G258200' => 'pvu', 'Phvul.009G176500' => 'pvu', 'Potri.003G167201' => 'ptr', 'Potri.005G118400' => 'ptr', 'Potri.012G089000' => 'ptr', 'Potri.012G102800' => 'ptr', 'Potri.015G079400' => 'ptr', 'Potri.015G100900' => 'ptr', 'Pp3c14_9810' => 'ppa', 'Pp3c15_10450' => 'ppa', 'Pp3c20_19150' => 'ppa', 'Pp3c23_12740' => 'ppa', 'Pp3c23_6310' => 'ppa', 'Pp3c24_3720' => 'ppa', 'Pp3c27_2580' => 'ppa', 'Pp3c9_8990' => 'ppa', 'PRCOL_00002854' => 'pco', 'Prupe.1G221200' => 'ppe', 'Prupe.3G289000' => 'ppe', 'Prupe.5G147000' => 'ppe', 'Prupe.6G157300' => 'ppe', 'Prupe.7G163400' => 'ppe', 'Psat0s2177g0040' => 'psa', 'Psat3g174760' => 'psa', 'Psat3g192160' => 'psa', 'Psat4g058520' => 'psa', 'Psat4g096840' => 'psa', 'Psat7g037320' => 'psa', 'PSO017G1274' => 'pso', 'PSO017G5166' => 'pso', 'PSO063G4558' => 'pso', 'PSO170G4458' => 'pso', 'PSO170G5005' => 'pso', 'PSO210G6156' => 'pso', 'PSO210G6635' => 'pso', 'PSO210G7397' => 'pso', 'PSO210G7700' => 'pso', 'PSO455G0035' => 'pso', 'PSO455G0180' => 'pso', 'PSO478G4515' => 'pso', 'PSO832G1305' => 'pso', 'PSO832G3489' => 'pso', 'QL02p075247' => 'qlo', 'QL03p051148' => 'qlo', 'QL05p010313' => 'qlo', 'QL06p034627' => 'qlo', 'QL10p001889' => 'qlo', 'QL10p010846' => 'qlo', 'RcHm_v2.0_Chr1g0350621' => 'rch', 'RcHm_v2.0_Chr1g0350641' => 'rch', 'RcHm_v2.0_Chr2g0092891' => 'rch', 'RcHm_v2.0_Chr2g0100251' => 'rch', 'RcHm_v2.0_Chr2g0158661' => 'rch', 'RcHm_v2.0_Chr2g0172741' => 'rch', 'RcHm_v2.0_Chr4g0429571' => 'rch', 'RcHm_v2.0_Chr5g0042471' => 'rch', 'RcHm_v2.0_Chr7g0189451' => 'rch', 'Rhsim08G0052000' => 'rsi', 'Rhsim08G0174400' => 'rsi', 'Rhsim08G0193200' => 'rsi', 'Rhsim10G0214800' => 'rsi', 'Rhsim10G0214900' => 'rsi', 'Rhsim10G0215000' => 'rsi', 'Rhsim12G0022900' => 'rsi', 'Rhsim12G0177500' => 'rsi', 'Rhsim12G0177700' => 'rsi', 'Sabra03G0122600' => 'sbr', 'Sabra05G0097400' => 'sbr', 'Sabra12G0064100' => 'sbr', 'Sabra15G0121300' => 'sbr', 'SalBow2G0642' => 'sbo', 'SalBow5G2667' => 'sbo', 'SalBow5G4873' => 'sbo', 'SalBow8G2395' => 'sbo', 'Sc03g0003290' => 'sci', 'Sc10g0010130' => 'sci', 'Sc22g0003650' => 'sci', 'Sed0001603' => 'sed', 'Sed0004259' => 'sed', 'Sed0006789' => 'sed', 'Sed0011838' => 'sed', 'Sed0012964' => 'sed', 'Sed0016383' => 'sed', 'Sed0019010' => 'sed', 'Sed0020188' => 'sed', 'SEGI_04702' => 'sgi', 'SEGI_17231' => 'sgi', 'SEGI_18877' => 'sgi', 'SEGI_25196' => 'sgi', 'SEGI_25515' => 'sgi', 'SEGI_28445' => 'sgi', 'SEGI_37452' => 'sgi', 'SGA_v2.0_scaffold188G40336' => 'sas', 'SGA_v2.0_scaffold228G43247' => 'sas', 'SGA_v2.0_scaffold280G46853' => 'sas', 'SGA_v2.0_scaffold34G13808' => 'sas', 'SGA_v2.0_scaffold40G15576' => 'sas', 'SGA_v2.0_scaffold611G53188' => 'sas', 'SGA_v2.0_scaffold78G25461' => 'sas', 'SGA_v2.0_scaffold90G27888' => 'sas', 'SHI08601' => 'shi', 'SHI08606' => 'shi', 'SHI17117' => 'shi', 'SHI17119' => 'shi', 'SMO118G0201' => 'smo', 'SMO169G0247' => 'smo', 'SMO176G0006' => 'smo', 'SMO176G0015' => 'smo', 'SMO202G0006' => 'smo', 'SMO240G0050' => 'smo', 'SMO286G0009' => 'smo', 'SMO338G0033' => 'smo', 'SMO356G0533' => 'smo', 'SMO364G0382' => 'smo', 'SMO367G0166' => 'smo', 'SMO367G1098' => 'smo', 'Solyc01g009920.3' => 'sly', 'Solyc01g099300.3' => 'sly', 'Solyc02g084700.3' => 'sly', 'Solyc03g097520.3' => 'sly', 'Solyc06g071580.3' => 'sly', 'Solyc10g081760.3' => 'sly', 'Sopen01g005480' => 'spe', 'Sopen01g042850' => 'spe', 'Sopen02g029370' => 'spe', 'Sopen03g028280' => 'spe', 'Sopen06g027870' => 'spe', 'Sopen10g032270' => 'spe', 'Sp5g18180' => 'spa', 'Sp6g12880' => 'spa', 'Sp6g30850' => 'spa', 'Sp7g22960' => 'spa', 'Sp7g34010' => 'spa', 'SpUn1326_0010' => 'spa', 'TAR371G0242' => 'tar', 'TAR622G0638' => 'tar', 'TAR628G1548' => 'tar', 'TAR629G1079' => 'tar', 'TAR629G3413' => 'tar', 'THA.LOC104804249' => 'tha', 'THA.LOC104808315' => 'tha', 'THA.LOC104809238' => 'tha', 'THA.LOC104825484' => 'tha', 'Thecc.01G025500' => 'tca', 'Thecc.03G015800' => 'tca', 'Thecc.03G018000' => 'tca', 'Thecc.03G134800' => 'tca', 'Thecc.04G014700' => 'tca', 'Thhalv10006991m.g' => 'esa', 'Thhalv10012707m.g' => 'esa', 'Thhalv10015739m.g' => 'esa', 'Thhalv10024553m.g' => 'esa', 'Thhalv10024673m.g' => 'esa', 'Thhalv10029187m.g' => 'esa', 'TPR.G12971' => 'tpr', 'TPR.G29396' => 'tpr', 'TPR.G33376' => 'tpr', 'TPR.G35508' => 'tpr', 'TPR.G35516' => 'tpr', 'TPR.G37317' => 'tpr', 'TPR.G37389' => 'tpr', 'TPR.G37523' => 'tpr', 'TPR.G559' => 'tpr', 'TWI14G0070' => 'twi', 'TWI14G0729' => 'twi', 'TWI18G0596' => 'twi', 'TWI39G0780' => 'twi', 'TWI39G0850' => 'twi', 'TWI73G1052' => 'twi', 'unitig_52.g17485' => 'ugi', 'unitig_61.g26355' => 'ugi', 'vmacro01040' => 'vma', 'vmacro16731' => 'vma', 'vmacro18270' => 'vma', 'vmacro19142' => 'vma', 'vmacro19407' => 'vma', 'vmacro19408' => 'vma', 'vmacro21899' => 'vma', 'vmacro21900' => 'vma', 'vmacro21901' => 'vma', 'VMungo0251G0490' => 'vmu', 'VMungo0251G1748' => 'vmu', 'VMungo1309G0421' => 'vmu', 'Zm00001eb086500' => 'zma', 'Zm00001eb150680' => 'zma', 'Zm00001eb162330' => 'zma', 'Zm00001eb203130' => 'zma', 'Zm00001eb369480' => 'zma', 'Zm00001eb382340' => 'zma', 'Zm00001eb416360' => 'zma' ), 'gf_id' => 'HOM05D000902', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000902' ), 'data_identifier' => 'HOM05D000902', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000902', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '663', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02470' => 'bna', 'A01p16260' => 'bna', 'A02p01680' => 'bna', 'A03p16600' => 'bna', 'A03p55660' => 'bna', 'A03p64160' => 'bna', 'A03p64170' => 'bna', 'A08p31900' => 'bna', 'A09p59530' => 'bna', 'A10p08230' => 'bna', 'A10p25090' => 'bna', 'Aa31LG3G7100' => 'aar', 'Aa31LG3G7110' => 'aar', 'Aa31LG6G13160' => 'aar', 'Aa31LG7G10770' => 'aar', 'Aa31LG7G3830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2723' => 'aag', 'Actinidia08045' => 'ach', 'Actinidia08888' => 'ach', 'Actinidia18333' => 'ach', 'Actinidia19334' => 'ach', 'Actinidia25552' => 'ach', 'Actinidia26089' => 'ach', 'Actinidia30615' => 'ach', 'Actinidia30616' => 'ach', 'Actinidia33083' => 'ach', 'Actinidia35762' => 'ach', 'Ah.02g110620' => 'amhyb', 'Ah.11g046390' => 'amhyb', 'AL1G31670' => 'aly', 'AL6G23730' => 'aly', 'AL7G14740' => 'aly', 'AL7G14750' => 'aly', 'AL7G14760' => 'aly', 'AL7G28220' => 'aly', 'AL8G24940' => 'aly', 'Aqoxy3G01665' => 'aox', 'Aqoxy3G02853' => 'aox', 'Aqoxy5G01513' => 'aox', 'Aqoxy5G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8SKA4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ75LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKDA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0LJZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7REX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZP4YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWX7I5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2QKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS0L9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPCD8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q161UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC7XCF' => 'arhy', 'AT1G19100' => 'ath', 'AT4G24970' => 'ath', 'AT4G36270' => 'ath', 'AT4G36280' => 'ath', 'AT4G36290' => 'ath', 'AT5G13130' => 'ath', 'AT5G50780' => 'ath', 'ATR0582G266' => 'atr', 'ATR0661G195' => 'atr', 'ATR1152G031' => 'atr', 'Atru.chr11.2382' => 'acertr', 'Atru.chr12.2337' => 'acertr', 'Atru.chr3.744' => 'acertr', 'Atru.chr6.1870' => 'acertr', 'Atru.chr9.2515' => 'acertr', 'AUR62004120' => 'cqu', 'AUR62005667' => 'cqu', 'AUR62007634' => 'cqu', 'AUR62008186' => 'cqu', 'AUR62008187' => 'cqu', 'AUR62008188' => 'cqu', 'AUR62027954' => 'cqu', 'AUR62028766' => 'cqu', 'AUR62028767' => 'cqu', 'AUR62028768' => 'cqu', 'AUR62028886' => 'cqu', 'AUR62029563' => 'cqu', 'AUR62038832' => 'cqu', 'BcaB01g04149' => 'bca', 'BcaB03g12940' => 'bca', 'BcaB03g13090' => 'bca', 'BcaB03g14466' => 'bca', 'BcaB05g24035' => 'bca', 'BcaC01g06050' => 'bca', 'BcaC04g19148' => 'bca', 'BcaC04g20761' => 'bca', 'BcaC06g32845' => 'bca', 'BcaC07g41274' => 'bca', 'BcaC09g50827' => 'bca', 'BcaNung00741' => 'bca', 'BcaNung00742' => 'bca', 'BcaNung01859' => 'bca', 'BcaNung03985' => 'bca', 'BcaNung03989' => 'bca', 'BcaNung05661' => 'bca', 'BolC1t00257H' => 'bol', 'BolC1t01956H' => 'bol', 'BolC2t06534H' => 'bol', 'BolC3t14334H' => 'bol', 'BolC5t30451H' => 'bol', 'BolC7t45880H' => 'bol', 'BolC7t46586H' => 'bol', 'BolC8t49301H' => 'bol', 'BolC8t51837H' => 'bol', 'BolC9t56822H' => 'bol', 'BolC9t59235H' => 'bol', 'BraA01t00234Z' => 'bra', 'BraA01t01563Z' => 'bra', 'BraA02t05147Z' => 'bra', 'BraA03t10947Z' => 'bra', 'BraA03t14633Z' => 'bra', 'BraA08t35112Z' => 'bra', 'BraA09t41330Z' => 'bra', 'BraA10t44570Z' => 'bra', 'C01p02670' => 'bna', 'C01p20260' => 'bna', 'C02p05890' => 'bna', 'C03p19530' => 'bna', 'C05p17470' => 'bna', 'C07p53900' => 'bna', 'C07p61630' => 'bna', 'C08p16800' => 'bna', 'C08p42810' => 'bna', 'C09p39480' => 'bna', 'C09p63980' => 'bna', 'CAN.G1001.7' => 'can', 'CAN.G1034.55' => 'can', 'CAN.G143.7' => 'can', 'CAN.G3340.1' => 'can', 'CAN.G358.19' => 'can', 'CAN.G373.2' => 'can', 'CAN.G674.16' => 'can', 'CAN.G674.17' => 'can', 'CAN.G674.18' => 'can', 'CAN.G732.2' => 'can', 'CAN.G732.3' => 'can', 'CAN.G993.39' => 'can', 'CANSAT01G2052' => 'cansat', 'CANSAT80G0070' => 'cansat', 'CANSAT80G0483' => 'cansat', 'CANSAT80G0625' => 'cansat', 'CARHR019690' => 'chi', 'CARHR080280' => 'chi', 'CARHR152750' => 'chi', 'CARHR152760' => 'chi', 'CARHR152770' => 'chi', 'CARHR200340' => 'chi', 'CARHR232370' => 'chi', 'CARHR244670' => 'chi', 'CARHR244680' => 'chi', 'CARHR257520' => 'chi', 'Carub.0001s1872' => 'cru', 'Carub.0006s1130' => 'cru', 'Carub.0007s0396' => 'cru', 'Carub.0007s0397' => 'cru', 'Carub.0007s1608' => 'cru', 'Carub.0008s1068' => 'cru', 'Carub.0008s1077' => 'cru', 'Ca_16158_v3' => 'car', 'Ca_17571_v3' => 'car', 'Ca_21936_v3' => 'car', 'Ca_22350_v3' => 'car', 'CBR_g22445' => 'cbr', 'CBR_g26290' => 'cbr', 'Cc04_g09610' => 'ccan', 'Cc04_g12280' => 'ccan', 'Cc07_g10230' => 'ccan', 'CDE02G0093' => 'cde', 'CDE02G0701' => 'cde', 'CDE04G1050' => 'cde', 'CDE05G1833' => 'cde', 'CDE05G3058' => 'cde', 'CDE05G3380' => 'cde', 'CDE06G0536' => 'cde', 'Cfa006923' => 'cfa', 'Cfa009402' => 'cfa', 'Cfa018751' => 'cfa', 'Cfa019164' => 'cfa', 'Cfa022935' => 'cfa', 'Ciclev10019081m.g' => 'ccl', 'Ciclev10025076m.g' => 'ccl', 'Ciclev10030712m.g' => 'ccl', 'Ciclev10033760m.g' => 'ccl', 'CiPaw.05G105600' => 'cil', 'CiPaw.08G136700' => 'cil', 'CiPaw.11G003900' => 'cil', 'CiPaw.11G023700' => 'cil', 'CiPaw.12G003700' => 'cil', 'ClCG06G017100' => 'cla', 'ClCG06G018110' => 'cla', 'ClCG07G008800' => 'cla', 'ClCG07G015330' => 'cla', 'COL.COLO4_13698' => 'col', 'COL.COLO4_16659' => 'col', 'COL.COLO4_21986' => 'col', 'COL.COLO4_24049' => 'col', 'COL.COLO4_29061' => 'col', 'COL.COLO4_29075' => 'col', 'COL.COLO4_30094' => 'col', 'Cpa.g.c33689' => 'cpa', 'Cpa.g.sc108.39' => 'cpa', 'Cpa.g.sc108.41' => 'cpa', 'Cpa.g.sc1163.1' => 'cpa', 'Cpa.g.sc4.155' => 'cpa', 'Cpa.g.sc6.194' => 'cpa', 'CsaV3_1G000340' => 'csa', 'CsaV3_1G001400' => 'csa', 'CsaV3_4G002220' => 'csa', 'CsaV3_4G005370' => 'csa', 'CSS0007487' => 'camsi', 'CSS0008066' => 'camsi', 'CSS0009120' => 'camsi', 'CSS0015512' => 'camsi', 'CSS0022409' => 'camsi', 'CSS0025358' => 'camsi', 'CSS0044547' => 'camsi', 'DCAR_013057' => 'dca', 'DCAR_015058' => 'dca', 'DCAR_016027' => 'dca', 'DCAR_017327' => 'dca', 'DCAR_020743' => 'dca', 'DCAR_026157' => 'dca', 'DCAR_032339' => 'dca', 'DCAR_032340' => 'dca', 'Dinv11200' => 'din', 'Dinv11201' => 'din', 'Dinv20631' => 'din', 'Dinv23182' => 'din', 'Dinv33466' => 'din', 'Dinv33583' => 'din', 'Dinv38565' => 'din', 'Duzib068G0200' => 'dzi', 'Duzib147G0132' => 'dzi', 'Duzib147G0635' => 'dzi', 'Duzib205G1670' => 'dzi', 'Duzib251G0606' => 'dzi', 'ECA232G3336' => 'eca', 'ECA232G3763' => 'eca', 'ECA232G4845' => 'eca', 'ECA234G1607' => 'eca', 'ECA246G0932' => 'eca', 'ECA247G0781' => 'eca', 'ECA247G1932' => 'eca', 'ECA247G2079' => 'eca', 'ECA247G3338' => 'eca', 'ECA247G4115' => 'eca', 'EL10Ac3g06552' => 'bvu', 'EL10Ac5g10721' => 'bvu', 'EL10Ac5g10722' => 'bvu', 'EL10Ac5g10723' => 'bvu', 'EL10Ac5g11361' => 'bvu', 'EL10Ac6g13553' => 'bvu', 'EL10As8g23872' => 'bvu', 'Eucgr.B00250' => 'egr', 'Eucgr.B00251' => 'egr', 'Eucgr.B03533' => 'egr', 'Eucgr.I02381' => 'egr', 'Eucgr.K02700' => 'egr', 'FAN02G0174' => 'fan', 'FAN02G3146' => 'fan', 'FAN04G1672' => 'fan', 'FAN04G2273' => 'fan', 'FAN05G2791' => 'fan', 'FAN05G4035' => 'fan', 'FAN07G0834' => 'fan', 'FAN08G1198' => 'fan', 'FAN09G4182' => 'fan', 'FAN12G0496' => 'fan', 'FAN13G1027' => 'fan', 'FAN13G2951' => 'fan', 'FAN14G0705' => 'fan', 'FAN14G0720' => 'fan', 'FAN17G0201' => 'fan', 'FAN17G2665' => 'fan', 'FAN18G1456' => 'fan', 'FAN18G1525' => 'fan', 'FAN18G3500' => 'fan', 'FAN28G2670' => 'fan', 'FvH4_1g12391' => 'fve', 'FvH4_4g23220' => 'fve', 'FvH4_5g08810' => 'fve', 'FvH4_5g28960' => 'fve', 'FvH4_6g42820' => 'fve', 'FvH4_6g51110' => 'fve', 'Glyma.02G051802' => 'gma', 'Glyma.04G185300' => 'gma', 'Glyma.05G202900' => 'gma', 'Glyma.08G010300' => 'gma', 'Glyma.16G131900' => 'gma', 'Glyma.17G087900' => 'gma', 'Gohir.A07G048600' => 'ghi', 'Gohir.A11G179000' => 'ghi', 'Gohir.A12G140900' => 'ghi', 'Gohir.A12G140950' => 'ghi', 'Gohir.A12G191700' => 'ghi', 'Gohir.A13G086300' => 'ghi', 'Gohir.D07G052900' => 'ghi', 'Gohir.D11G186600' => 'ghi', 'Gohir.D12G145575' => 'ghi', 'Gohir.D12G145650' => 'ghi', 'Gohir.D12G145725' => 'ghi', 'Gohir.D12G194050' => 'ghi', 'Gohir.D13G091800' => 'ghi', 'Gorai.001G055900' => 'gra', 'Gorai.007G198400' => 'gra', 'Gorai.008G157000' => 'gra', 'Gorai.008G157100' => 'gra', 'Gorai.008G208700' => 'gra', 'Gorai.010G138700' => 'gra', 'GSVIVG01000977001' => 'vvi', 'GSVIVG01007708001' => 'vvi', 'GSVIVG01008587001' => 'vvi', 'GSVIVG01018849001' => 'vvi', 'GSVIVG01032432001' => 'vvi', 'HanXRQChr02g0034131' => 'han', 'HanXRQChr02g0035981' => 'han', 'HanXRQChr02g0035991' => 'han', 'HanXRQChr05g0155611' => 'han', 'HanXRQChr05g0155621' => 'han', 'HanXRQChr08g0236501' => 'han', 'HanXRQChr09g0261321' => 'han', 'HanXRQChr09g0272081' => 'han', 'HanXRQChr10g0310741' => 'han', 'HanXRQChr11g0325591' => 'han', 'HanXRQChr12g0385691' => 'han', 'HanXRQChr13g0387801' => 'han', 'HanXRQChr15g0463011' => 'han', 'Haze_03826' => 'cav', 'Haze_03827' => 'cav', 'Haze_07183' => 'cav', 'Haze_07537' => 'cav', 'Haze_07539' => 'cav', 'Haze_12461' => 'cav', 'Haze_16115' => 'cav', 'Haze_16808' => 'cav', 'Haze_18531' => 'cav', 'Hma1.2p1_0046F.1_g026700' => 'hma', 'Hma1.2p1_0046F.1_g026710' => 'hma', 'Hma1.2p1_0168F.1_g074340' => 'hma', 'Hma1.2p1_0266F.1_g107030' => 'hma', 'Hma1.2p1_0266F.1_g107060' => 'hma', 'Hma1.2p1_0275F.1_g110510' => 'hma', 'Hma1.2p1_0592F.1_g185490' => 'hma', 'Hma1.2p1_0592F.1_g185500' => 'hma', 'Hma1.2p1_0592F.1_g185510' => 'hma', 'Hma1.2p1_0592F.1_g185520' => 'hma', 'Hma1.2p1_0592F.1_g185530' => 'hma', 'Hma1.2p1_0818F.1_g223450' => 'hma', 'HPP92_009708' => 'vpl', 'HPP92_009793' => 'vpl', 'HPP92_009796' => 'vpl', 'HPP92_009797' => 'vpl', 'HPP92_014940' => 'vpl', 'HPP92_014988' => 'vpl', 'Hund02463' => 'sun', 'Hund02760' => 'sun', 'Hund05071' => 'sun', 'Hund10108' => 'sun', 'Hund11204' => 'sun', 'Hund14016' => 'sun', 'Hund16464' => 'sun', 'Lalb_Chr09g0333391' => 'lal', 'Lalb_Chr11g0070461' => 'lal', 'Lalb_Chr12g0201671' => 'lal', 'Lalb_Chr13g0297161' => 'lal', 'Lj1g0002823' => 'lja', 'Lj3C1074T6' => 'lonja', 'Lj4A212T28' => 'lonja', 'Lj4g0005516' => 'lja', 'Lj4g0013705' => 'lja', 'Lj4g0027865' => 'lja', 'Lj5C92G16' => 'lonja', 'Lj5C92T12' => 'lonja', 'Lj7C596T3' => 'lonja', 'Lj9A446G59' => 'lonja', 'Lj9A482G21' => 'lonja', 'Lsat_1_v5_gn_1_28261' => 'lsa', 'Lsat_1_v5_gn_1_28281' => 'lsa', 'Lsat_1_v5_gn_1_32721' => 'lsa', 'Lsat_1_v5_gn_4_151760' => 'lsa', 'Lsat_1_v5_gn_4_2120' => 'lsa', 'Lsat_1_v5_gn_4_75761' => 'lsa', 'Lsat_1_v5_gn_5_10920' => 'lsa', 'Manes.02G099900' => 'mes', 'Manes.11G096200' => 'mes', 'Manes.12G007200' => 'mes', 'Manes.14G048300' => 'mes', 'Manes.17G114700' => 'mes', 'Mapoly0002s0070' => 'mpo', 'Mapoly0029s0099' => 'mpo', 'MBI07_g24742_MAGBIO' => 'mbi', 'MBI10_g27988_MAGBIO' => 'mbi', 'MBI11_g13057_MAGBIO' => 'mbi', 'MD02G1137200' => 'mdo', 'MD06G1137200' => 'mdo', 'MD07G1122300' => 'mdo', 'MD09G1078200' => 'mdo', 'MD13G1123700' => 'mdo', 'MD14G1151900' => 'mdo', 'MD17G1030900' => 'mdo', 'MD17G1068200' => 'mdo', 'MD17G1068600' => 'mdo', 'Medtr3g077540' => 'mtr', 'Medtr4g105530' => 'mtr', 'Medtr8g076580' => 'mtr', 'Medtr8g076590' => 'mtr', 'Medtr8g096410' => 'mtr', 'MELO3C016411.2' => 'cme', 'MELO3C017780.2' => 'cme', 'MELO3C022560.2' => 'cme', 'MELO3C026187.2' => 'cme', 'MELO3C026286.2' => 'cme', 'MELO3C032854.2' => 'cme', 'Migut.H02495' => 'egut', 'Migut.I00561' => 'egut', 'Migut.K01015' => 'egut', 'Migut.K01016' => 'egut', 'Migut.L00743' => 'egut', 'Migut.L00744' => 'egut', 'Migut.L00746' => 'egut', 'Migut.L00798' => 'egut', 'Migut.L00799' => 'egut', 'Migut.N02096' => 'egut', 'MSTRG.11259' => 'ama', 'MSTRG.23142' => 'ama', 'MSTRG.2499' => 'ama', 'Nitab4.5_0000003g0730' => 'nta', 'Nitab4.5_0000137g0020' => 'nta', 'Nitab4.5_0000721g0210' => 'nta', 'Nitab4.5_0000723g0050' => 'nta', 'Nitab4.5_0000913g0070' => 'nta', 'Nitab4.5_0001332g0040' => 'nta', 'Nitab4.5_0001771g0050' => 'nta', 'Nitab4.5_0001918g0050' => 'nta', 'Nitab4.5_0002686g0030' => 'nta', 'Nitab4.5_0003156g0020' => 'nta', 'Nitab4.5_0003383g0040' => 'nta', 'Nitab4.5_0003918g0010' => 'nta', 'Nitab4.5_0006760g0010' => 'nta', 'Nn1g05981' => 'nnu', 'Nn1g06288' => 'nnu', 'Nn3g16371' => 'nnu', 'Nn3g16786' => 'nnu', 'Nn4g22232' => 'nnu', 'Oeu005144.1' => 'oeu', 'Oeu005145.1' => 'oeu', 'Oeu011348.1' => 'oeu', 'Oeu016415.1' => 'oeu', 'Oeu023501.1' => 'oeu', 'Oeu044473.1' => 'oeu', 'Oeu048892.2' => 'oeu', 'Os01g0549200' => 'osa', 'Os02g0469300' => 'osa', 'Os04g0311100' => 'osa', 'Os06g0474900' => 'osa', 'Os10g0181700' => 'osa', 'Os11g0454800' => 'osa', 'Peaxi162Scf00037g00714' => 'pax', 'Peaxi162Scf00084g01217' => 'pax', 'Peaxi162Scf00257g00217' => 'pax', 'Peaxi162Scf00516g00215' => 'pax', 'Peaxi162Scf00689g00123' => 'pax', 'PGR044G2719' => 'pgr', 'PGR083G1360' => 'pgr', 'PGR102G2849' => 'pgr', 'PGR119G2534' => 'pgr', 'PGSC0003DMG400003538' => 'stu', 'PGSC0003DMG400028138' => 'stu', 'PGSC0003DMG400031732' => 'stu', 'PGSC0003DMG400038165' => 'stu', 'Phvul.002G284600' => 'pvu', 'Phvul.003G258200' => 'pvu', 'Phvul.009G176500' => 'pvu', 'Potri.003G167201' => 'ptr', 'Potri.005G118400' => 'ptr', 'Potri.012G089000' => 'ptr', 'Potri.012G102800' => 'ptr', 'Potri.015G079400' => 'ptr', 'Potri.015G100900' => 'ptr', 'Pp3c14_9810' => 'ppa', 'Pp3c15_10450' => 'ppa', 'Pp3c20_19150' => 'ppa', 'Pp3c23_12740' => 'ppa', 'Pp3c23_6310' => 'ppa', 'Pp3c24_3720' => 'ppa', 'Pp3c27_2580' => 'ppa', 'Pp3c9_8990' => 'ppa', 'PRCOL_00002854' => 'pco', 'Prupe.1G221200' => 'ppe', 'Prupe.3G289000' => 'ppe', 'Prupe.5G147000' => 'ppe', 'Prupe.6G157300' => 'ppe', 'Prupe.7G163400' => 'ppe', 'Psat0s2177g0040' => 'psa', 'Psat3g174760' => 'psa', 'Psat3g192160' => 'psa', 'Psat4g058520' => 'psa', 'Psat4g096840' => 'psa', 'Psat7g037320' => 'psa', 'PSO017G1274' => 'pso', 'PSO017G5166' => 'pso', 'PSO063G4558' => 'pso', 'PSO170G4458' => 'pso', 'PSO170G5005' => 'pso', 'PSO210G6156' => 'pso', 'PSO210G6635' => 'pso', 'PSO210G7397' => 'pso', 'PSO210G7700' => 'pso', 'PSO455G0035' => 'pso', 'PSO455G0180' => 'pso', 'PSO478G4515' => 'pso', 'PSO832G1305' => 'pso', 'PSO832G3489' => 'pso', 'QL02p075247' => 'qlo', 'QL03p051148' => 'qlo', 'QL05p010313' => 'qlo', 'QL06p034627' => 'qlo', 'QL10p001889' => 'qlo', 'QL10p010846' => 'qlo', 'RcHm_v2.0_Chr1g0350621' => 'rch', 'RcHm_v2.0_Chr1g0350641' => 'rch', 'RcHm_v2.0_Chr2g0092891' => 'rch', 'RcHm_v2.0_Chr2g0100251' => 'rch', 'RcHm_v2.0_Chr2g0158661' => 'rch', 'RcHm_v2.0_Chr2g0172741' => 'rch', 'RcHm_v2.0_Chr4g0429571' => 'rch', 'RcHm_v2.0_Chr5g0042471' => 'rch', 'RcHm_v2.0_Chr7g0189451' => 'rch', 'Rhsim08G0052000' => 'rsi', 'Rhsim08G0174400' => 'rsi', 'Rhsim08G0193200' => 'rsi', 'Rhsim10G0214800' => 'rsi', 'Rhsim10G0214900' => 'rsi', 'Rhsim10G0215000' => 'rsi', 'Rhsim12G0022900' => 'rsi', 'Rhsim12G0177500' => 'rsi', 'Rhsim12G0177700' => 'rsi', 'Sabra03G0122600' => 'sbr', 'Sabra05G0097400' => 'sbr', 'Sabra12G0064100' => 'sbr', 'Sabra15G0121300' => 'sbr', 'SalBow2G0642' => 'sbo', 'SalBow5G2667' => 'sbo', 'SalBow5G4873' => 'sbo', 'SalBow8G2395' => 'sbo', 'Sc03g0003290' => 'sci', 'Sc10g0010130' => 'sci', 'Sc22g0003650' => 'sci', 'Sed0001603' => 'sed', 'Sed0004259' => 'sed', 'Sed0006789' => 'sed', 'Sed0011838' => 'sed', 'Sed0012964' => 'sed', 'Sed0016383' => 'sed', 'Sed0019010' => 'sed', 'Sed0020188' => 'sed', 'SEGI_04702' => 'sgi', 'SEGI_17231' => 'sgi', 'SEGI_18877' => 'sgi', 'SEGI_25196' => 'sgi', 'SEGI_25515' => 'sgi', 'SEGI_28445' => 'sgi', 'SEGI_37452' => 'sgi', 'SGA_v2.0_scaffold188G40336' => 'sas', 'SGA_v2.0_scaffold228G43247' => 'sas', 'SGA_v2.0_scaffold280G46853' => 'sas', 'SGA_v2.0_scaffold34G13808' => 'sas', 'SGA_v2.0_scaffold40G15576' => 'sas', 'SGA_v2.0_scaffold611G53188' => 'sas', 'SGA_v2.0_scaffold78G25461' => 'sas', 'SGA_v2.0_scaffold90G27888' => 'sas', 'SHI08601' => 'shi', 'SHI08606' => 'shi', 'SHI17117' => 'shi', 'SHI17119' => 'shi', 'SMO118G0201' => 'smo', 'SMO169G0247' => 'smo', 'SMO176G0006' => 'smo', 'SMO176G0015' => 'smo', 'SMO202G0006' => 'smo', 'SMO240G0050' => 'smo', 'SMO286G0009' => 'smo', 'SMO338G0033' => 'smo', 'SMO356G0533' => 'smo', 'SMO364G0382' => 'smo', 'SMO367G0166' => 'smo', 'SMO367G1098' => 'smo', 'Solyc01g009920.3' => 'sly', 'Solyc01g099300.3' => 'sly', 'Solyc02g084700.3' => 'sly', 'Solyc03g097520.3' => 'sly', 'Solyc06g071580.3' => 'sly', 'Solyc10g081760.3' => 'sly', 'Sopen01g005480' => 'spe', 'Sopen01g042850' => 'spe', 'Sopen02g029370' => 'spe', 'Sopen03g028280' => 'spe', 'Sopen06g027870' => 'spe', 'Sopen10g032270' => 'spe', 'Sp5g18180' => 'spa', 'Sp6g12880' => 'spa', 'Sp6g30850' => 'spa', 'Sp7g22960' => 'spa', 'Sp7g34010' => 'spa', 'SpUn1326_0010' => 'spa', 'TAR371G0242' => 'tar', 'TAR622G0638' => 'tar', 'TAR628G1548' => 'tar', 'TAR629G1079' => 'tar', 'TAR629G3413' => 'tar', 'THA.LOC104804249' => 'tha', 'THA.LOC104808315' => 'tha', 'THA.LOC104809238' => 'tha', 'THA.LOC104825484' => 'tha', 'Thecc.01G025500' => 'tca', 'Thecc.03G015800' => 'tca', 'Thecc.03G018000' => 'tca', 'Thecc.03G134800' => 'tca', 'Thecc.04G014700' => 'tca', 'Thhalv10006991m.g' => 'esa', 'Thhalv10012707m.g' => 'esa', 'Thhalv10015739m.g' => 'esa', 'Thhalv10024553m.g' => 'esa', 'Thhalv10024673m.g' => 'esa', 'Thhalv10029187m.g' => 'esa', 'TPR.G12971' => 'tpr', 'TPR.G29396' => 'tpr', 'TPR.G33376' => 'tpr', 'TPR.G35508' => 'tpr', 'TPR.G35516' => 'tpr', 'TPR.G37317' => 'tpr', 'TPR.G37389' => 'tpr', 'TPR.G37523' => 'tpr', 'TPR.G559' => 'tpr', 'TWI14G0070' => 'twi', 'TWI14G0729' => 'twi', 'TWI18G0596' => 'twi', 'TWI39G0780' => 'twi', 'TWI39G0850' => 'twi', 'TWI73G1052' => 'twi', 'unitig_52.g17485' => 'ugi', 'unitig_61.g26355' => 'ugi', 'vmacro01040' => 'vma', 'vmacro16731' => 'vma', 'vmacro18270' => 'vma', 'vmacro19142' => 'vma', 'vmacro19407' => 'vma', 'vmacro19408' => 'vma', 'vmacro21899' => 'vma', 'vmacro21900' => 'vma', 'vmacro21901' => 'vma', 'VMungo0251G0490' => 'vmu', 'VMungo0251G1748' => 'vmu', 'VMungo1309G0421' => 'vmu', 'Zm00001eb086500' => 'zma', 'Zm00001eb150680' => 'zma', 'Zm00001eb162330' => 'zma', 'Zm00001eb203130' => 'zma', 'Zm00001eb369480' => 'zma', 'Zm00001eb382340' => 'zma', 'Zm00001eb416360' => 'zma' ) $gf_id = 'HOM05D000902' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000902' ) $data_identifier = 'HOM05D000902' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 13, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 10, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 6, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 9, 'hma' => (int) 12, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 4, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 6, 'ppa' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 6, 'rch' => (int) 9, 'rsi' => (int) 9, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 12, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 3, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416360' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000902', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '663', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02470' => 'bna', 'A01p16260' => 'bna', 'A02p01680' => 'bna', 'A03p16600' => 'bna', 'A03p55660' => 'bna', 'A03p64160' => 'bna', 'A03p64170' => 'bna', 'A08p31900' => 'bna', 'A09p59530' => 'bna', 'A10p08230' => 'bna', 'A10p25090' => 'bna', 'Aa31LG3G7100' => 'aar', 'Aa31LG3G7110' => 'aar', 'Aa31LG6G13160' => 'aar', 'Aa31LG7G10770' => 'aar', 'Aa31LG7G3830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2723' => 'aag', 'Actinidia08045' => 'ach', 'Actinidia08888' => 'ach', 'Actinidia18333' => 'ach', 'Actinidia19334' => 'ach', 'Actinidia25552' => 'ach', 'Actinidia26089' => 'ach', 'Actinidia30615' => 'ach', 'Actinidia30616' => 'ach', 'Actinidia33083' => 'ach', 'Actinidia35762' => 'ach', 'Ah.02g110620' => 'amhyb', 'Ah.11g046390' => 'amhyb', 'AL1G31670' => 'aly', 'AL6G23730' => 'aly', 'AL7G14740' => 'aly', 'AL7G14750' => 'aly', 'AL7G14760' => 'aly', 'AL7G28220' => 'aly', 'AL8G24940' => 'aly', 'Aqoxy3G01665' => 'aox', 'Aqoxy3G02853' => 'aox', 'Aqoxy5G01513' => 'aox', 'Aqoxy5G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8SKA4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ75LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKDA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0LJZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7REX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZP4YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWX7I5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2QKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS0L9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPCD8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q161UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC7XCF' => 'arhy', 'AT1G19100' => 'ath', 'AT4G24970' => 'ath', 'AT4G36270' => 'ath', 'AT4G36280' => 'ath', 'AT4G36290' => 'ath', 'AT5G13130' => 'ath', 'AT5G50780' => 'ath', 'ATR0582G266' => 'atr', 'ATR0661G195' => 'atr', 'ATR1152G031' => 'atr', 'Atru.chr11.2382' => 'acertr', 'Atru.chr12.2337' => 'acertr', 'Atru.chr3.744' => 'acertr', 'Atru.chr6.1870' => 'acertr', 'Atru.chr9.2515' => 'acertr', 'AUR62004120' => 'cqu', 'AUR62005667' => 'cqu', 'AUR62007634' => 'cqu', 'AUR62008186' => 'cqu', 'AUR62008187' => 'cqu', 'AUR62008188' => 'cqu', 'AUR62027954' => 'cqu', 'AUR62028766' => 'cqu', 'AUR62028767' => 'cqu', 'AUR62028768' => 'cqu', 'AUR62028886' => 'cqu', 'AUR62029563' => 'cqu', 'AUR62038832' => 'cqu', 'BcaB01g04149' => 'bca', 'BcaB03g12940' => 'bca', 'BcaB03g13090' => 'bca', 'BcaB03g14466' => 'bca', 'BcaB05g24035' => 'bca', 'BcaC01g06050' => 'bca', 'BcaC04g19148' => 'bca', 'BcaC04g20761' => 'bca', 'BcaC06g32845' => 'bca', 'BcaC07g41274' => 'bca', 'BcaC09g50827' => 'bca', 'BcaNung00741' => 'bca', 'BcaNung00742' => 'bca', 'BcaNung01859' => 'bca', 'BcaNung03985' => 'bca', 'BcaNung03989' => 'bca', 'BcaNung05661' => 'bca', 'BolC1t00257H' => 'bol', 'BolC1t01956H' => 'bol', 'BolC2t06534H' => 'bol', 'BolC3t14334H' => 'bol', 'BolC5t30451H' => 'bol', 'BolC7t45880H' => 'bol', 'BolC7t46586H' => 'bol', 'BolC8t49301H' => 'bol', 'BolC8t51837H' => 'bol', 'BolC9t56822H' => 'bol', 'BolC9t59235H' => 'bol', 'BraA01t00234Z' => 'bra', 'BraA01t01563Z' => 'bra', 'BraA02t05147Z' => 'bra', 'BraA03t10947Z' => 'bra', 'BraA03t14633Z' => 'bra', 'BraA08t35112Z' => 'bra', 'BraA09t41330Z' => 'bra', 'BraA10t44570Z' => 'bra', 'C01p02670' => 'bna', 'C01p20260' => 'bna', 'C02p05890' => 'bna', 'C03p19530' => 'bna', 'C05p17470' => 'bna', 'C07p53900' => 'bna', 'C07p61630' => 'bna', 'C08p16800' => 'bna', 'C08p42810' => 'bna', 'C09p39480' => 'bna', 'C09p63980' => 'bna', 'CAN.G1001.7' => 'can', 'CAN.G1034.55' => 'can', 'CAN.G143.7' => 'can', 'CAN.G3340.1' => 'can', 'CAN.G358.19' => 'can', 'CAN.G373.2' => 'can', 'CAN.G674.16' => 'can', 'CAN.G674.17' => 'can', 'CAN.G674.18' => 'can', 'CAN.G732.2' => 'can', 'CAN.G732.3' => 'can', 'CAN.G993.39' => 'can', 'CANSAT01G2052' => 'cansat', 'CANSAT80G0070' => 'cansat', 'CANSAT80G0483' => 'cansat', 'CANSAT80G0625' => 'cansat', 'CARHR019690' => 'chi', 'CARHR080280' => 'chi', 'CARHR152750' => 'chi', 'CARHR152760' => 'chi', 'CARHR152770' => 'chi', 'CARHR200340' => 'chi', 'CARHR232370' => 'chi', 'CARHR244670' => 'chi', 'CARHR244680' => 'chi', 'CARHR257520' => 'chi', 'Carub.0001s1872' => 'cru', 'Carub.0006s1130' => 'cru', 'Carub.0007s0396' => 'cru', 'Carub.0007s0397' => 'cru', 'Carub.0007s1608' => 'cru', 'Carub.0008s1068' => 'cru', 'Carub.0008s1077' => 'cru', 'Ca_16158_v3' => 'car', 'Ca_17571_v3' => 'car', 'Ca_21936_v3' => 'car', 'Ca_22350_v3' => 'car', 'CBR_g22445' => 'cbr', 'CBR_g26290' => 'cbr', 'Cc04_g09610' => 'ccan', 'Cc04_g12280' => 'ccan', 'Cc07_g10230' => 'ccan', 'CDE02G0093' => 'cde', 'CDE02G0701' => 'cde', 'CDE04G1050' => 'cde', 'CDE05G1833' => 'cde', 'CDE05G3058' => 'cde', 'CDE05G3380' => 'cde', 'CDE06G0536' => 'cde', 'Cfa006923' => 'cfa', 'Cfa009402' => 'cfa', 'Cfa018751' => 'cfa', 'Cfa019164' => 'cfa', 'Cfa022935' => 'cfa', 'Ciclev10019081m.g' => 'ccl', 'Ciclev10025076m.g' => 'ccl', 'Ciclev10030712m.g' => 'ccl', 'Ciclev10033760m.g' => 'ccl', 'CiPaw.05G105600' => 'cil', 'CiPaw.08G136700' => 'cil', 'CiPaw.11G003900' => 'cil', 'CiPaw.11G023700' => 'cil', 'CiPaw.12G003700' => 'cil', 'ClCG06G017100' => 'cla', 'ClCG06G018110' => 'cla', 'ClCG07G008800' => 'cla', 'ClCG07G015330' => 'cla', 'COL.COLO4_13698' => 'col', 'COL.COLO4_16659' => 'col', 'COL.COLO4_21986' => 'col', 'COL.COLO4_24049' => 'col', 'COL.COLO4_29061' => 'col', 'COL.COLO4_29075' => 'col', 'COL.COLO4_30094' => 'col', 'Cpa.g.c33689' => 'cpa', 'Cpa.g.sc108.39' => 'cpa', 'Cpa.g.sc108.41' => 'cpa', 'Cpa.g.sc1163.1' => 'cpa', 'Cpa.g.sc4.155' => 'cpa', 'Cpa.g.sc6.194' => 'cpa', 'CsaV3_1G000340' => 'csa', 'CsaV3_1G001400' => 'csa', 'CsaV3_4G002220' => 'csa', 'CsaV3_4G005370' => 'csa', 'CSS0007487' => 'camsi', 'CSS0008066' => 'camsi', 'CSS0009120' => 'camsi', 'CSS0015512' => 'camsi', 'CSS0022409' => 'camsi', 'CSS0025358' => 'camsi', 'CSS0044547' => 'camsi', 'DCAR_013057' => 'dca', 'DCAR_015058' => 'dca', 'DCAR_016027' => 'dca', 'DCAR_017327' => 'dca', 'DCAR_020743' => 'dca', 'DCAR_026157' => 'dca', 'DCAR_032339' => 'dca', 'DCAR_032340' => 'dca', 'Dinv11200' => 'din', 'Dinv11201' => 'din', 'Dinv20631' => 'din', 'Dinv23182' => 'din', 'Dinv33466' => 'din', 'Dinv33583' => 'din', 'Dinv38565' => 'din', 'Duzib068G0200' => 'dzi', 'Duzib147G0132' => 'dzi', 'Duzib147G0635' => 'dzi', 'Duzib205G1670' => 'dzi', 'Duzib251G0606' => 'dzi', 'ECA232G3336' => 'eca', 'ECA232G3763' => 'eca', 'ECA232G4845' => 'eca', 'ECA234G1607' => 'eca', 'ECA246G0932' => 'eca', 'ECA247G0781' => 'eca', 'ECA247G1932' => 'eca', 'ECA247G2079' => 'eca', 'ECA247G3338' => 'eca', 'ECA247G4115' => 'eca', 'EL10Ac3g06552' => 'bvu', 'EL10Ac5g10721' => 'bvu', 'EL10Ac5g10722' => 'bvu', 'EL10Ac5g10723' => 'bvu', 'EL10Ac5g11361' => 'bvu', 'EL10Ac6g13553' => 'bvu', 'EL10As8g23872' => 'bvu', 'Eucgr.B00250' => 'egr', 'Eucgr.B00251' => 'egr', 'Eucgr.B03533' => 'egr', 'Eucgr.I02381' => 'egr', 'Eucgr.K02700' => 'egr', 'FAN02G0174' => 'fan', 'FAN02G3146' => 'fan', 'FAN04G1672' => 'fan', 'FAN04G2273' => 'fan', 'FAN05G2791' => 'fan', 'FAN05G4035' => 'fan', 'FAN07G0834' => 'fan', 'FAN08G1198' => 'fan', 'FAN09G4182' => 'fan', 'FAN12G0496' => 'fan', 'FAN13G1027' => 'fan', 'FAN13G2951' => 'fan', 'FAN14G0705' => 'fan', 'FAN14G0720' => 'fan', 'FAN17G0201' => 'fan', 'FAN17G2665' => 'fan', 'FAN18G1456' => 'fan', 'FAN18G1525' => 'fan', 'FAN18G3500' => 'fan', 'FAN28G2670' => 'fan', 'FvH4_1g12391' => 'fve', 'FvH4_4g23220' => 'fve', 'FvH4_5g08810' => 'fve', 'FvH4_5g28960' => 'fve', 'FvH4_6g42820' => 'fve', 'FvH4_6g51110' => 'fve', 'Glyma.02G051802' => 'gma', 'Glyma.04G185300' => 'gma', 'Glyma.05G202900' => 'gma', 'Glyma.08G010300' => 'gma', 'Glyma.16G131900' => 'gma', 'Glyma.17G087900' => 'gma', 'Gohir.A07G048600' => 'ghi', 'Gohir.A11G179000' => 'ghi', 'Gohir.A12G140900' => 'ghi', 'Gohir.A12G140950' => 'ghi', 'Gohir.A12G191700' => 'ghi', 'Gohir.A13G086300' => 'ghi', 'Gohir.D07G052900' => 'ghi', 'Gohir.D11G186600' => 'ghi', 'Gohir.D12G145575' => 'ghi', 'Gohir.D12G145650' => 'ghi', 'Gohir.D12G145725' => 'ghi', 'Gohir.D12G194050' => 'ghi', 'Gohir.D13G091800' => 'ghi', 'Gorai.001G055900' => 'gra', 'Gorai.007G198400' => 'gra', 'Gorai.008G157000' => 'gra', 'Gorai.008G157100' => 'gra', 'Gorai.008G208700' => 'gra', 'Gorai.010G138700' => 'gra', 'GSVIVG01000977001' => 'vvi', 'GSVIVG01007708001' => 'vvi', 'GSVIVG01008587001' => 'vvi', 'GSVIVG01018849001' => 'vvi', 'GSVIVG01032432001' => 'vvi', 'HanXRQChr02g0034131' => 'han', 'HanXRQChr02g0035981' => 'han', 'HanXRQChr02g0035991' => 'han', 'HanXRQChr05g0155611' => 'han', 'HanXRQChr05g0155621' => 'han', 'HanXRQChr08g0236501' => 'han', 'HanXRQChr09g0261321' => 'han', 'HanXRQChr09g0272081' => 'han', 'HanXRQChr10g0310741' => 'han', 'HanXRQChr11g0325591' => 'han', 'HanXRQChr12g0385691' => 'han', 'HanXRQChr13g0387801' => 'han', 'HanXRQChr15g0463011' => 'han', 'Haze_03826' => 'cav', 'Haze_03827' => 'cav', 'Haze_07183' => 'cav', 'Haze_07537' => 'cav', 'Haze_07539' => 'cav', 'Haze_12461' => 'cav', 'Haze_16115' => 'cav', 'Haze_16808' => 'cav', 'Haze_18531' => 'cav', 'Hma1.2p1_0046F.1_g026700' => 'hma', 'Hma1.2p1_0046F.1_g026710' => 'hma', 'Hma1.2p1_0168F.1_g074340' => 'hma', 'Hma1.2p1_0266F.1_g107030' => 'hma', 'Hma1.2p1_0266F.1_g107060' => 'hma', 'Hma1.2p1_0275F.1_g110510' => 'hma', 'Hma1.2p1_0592F.1_g185490' => 'hma', 'Hma1.2p1_0592F.1_g185500' => 'hma', 'Hma1.2p1_0592F.1_g185510' => 'hma', 'Hma1.2p1_0592F.1_g185520' => 'hma', 'Hma1.2p1_0592F.1_g185530' => 'hma', 'Hma1.2p1_0818F.1_g223450' => 'hma', 'HPP92_009708' => 'vpl', 'HPP92_009793' => 'vpl', 'HPP92_009796' => 'vpl', 'HPP92_009797' => 'vpl', 'HPP92_014940' => 'vpl', 'HPP92_014988' => 'vpl', 'Hund02463' => 'sun', 'Hund02760' => 'sun', 'Hund05071' => 'sun', 'Hund10108' => 'sun', 'Hund11204' => 'sun', 'Hund14016' => 'sun', 'Hund16464' => 'sun', 'Lalb_Chr09g0333391' => 'lal', 'Lalb_Chr11g0070461' => 'lal', 'Lalb_Chr12g0201671' => 'lal', 'Lalb_Chr13g0297161' => 'lal', 'Lj1g0002823' => 'lja', 'Lj3C1074T6' => 'lonja', 'Lj4A212T28' => 'lonja', 'Lj4g0005516' => 'lja', 'Lj4g0013705' => 'lja', 'Lj4g0027865' => 'lja', 'Lj5C92G16' => 'lonja', 'Lj5C92T12' => 'lonja', 'Lj7C596T3' => 'lonja', 'Lj9A446G59' => 'lonja', 'Lj9A482G21' => 'lonja', 'Lsat_1_v5_gn_1_28261' => 'lsa', 'Lsat_1_v5_gn_1_28281' => 'lsa', 'Lsat_1_v5_gn_1_32721' => 'lsa', 'Lsat_1_v5_gn_4_151760' => 'lsa', 'Lsat_1_v5_gn_4_2120' => 'lsa', 'Lsat_1_v5_gn_4_75761' => 'lsa', 'Lsat_1_v5_gn_5_10920' => 'lsa', 'Manes.02G099900' => 'mes', 'Manes.11G096200' => 'mes', 'Manes.12G007200' => 'mes', 'Manes.14G048300' => 'mes', 'Manes.17G114700' => 'mes', 'Mapoly0002s0070' => 'mpo', 'Mapoly0029s0099' => 'mpo', 'MBI07_g24742_MAGBIO' => 'mbi', 'MBI10_g27988_MAGBIO' => 'mbi', 'MBI11_g13057_MAGBIO' => 'mbi', 'MD02G1137200' => 'mdo', 'MD06G1137200' => 'mdo', 'MD07G1122300' => 'mdo', 'MD09G1078200' => 'mdo', 'MD13G1123700' => 'mdo', 'MD14G1151900' => 'mdo', 'MD17G1030900' => 'mdo', 'MD17G1068200' => 'mdo', 'MD17G1068600' => 'mdo', 'Medtr3g077540' => 'mtr', 'Medtr4g105530' => 'mtr', 'Medtr8g076580' => 'mtr', 'Medtr8g076590' => 'mtr', 'Medtr8g096410' => 'mtr', 'MELO3C016411.2' => 'cme', 'MELO3C017780.2' => 'cme', 'MELO3C022560.2' => 'cme', 'MELO3C026187.2' => 'cme', 'MELO3C026286.2' => 'cme', 'MELO3C032854.2' => 'cme', 'Migut.H02495' => 'egut', 'Migut.I00561' => 'egut', 'Migut.K01015' => 'egut', 'Migut.K01016' => 'egut', 'Migut.L00743' => 'egut', 'Migut.L00744' => 'egut', 'Migut.L00746' => 'egut', 'Migut.L00798' => 'egut', 'Migut.L00799' => 'egut', 'Migut.N02096' => 'egut', 'MSTRG.11259' => 'ama', 'MSTRG.23142' => 'ama', 'MSTRG.2499' => 'ama', 'Nitab4.5_0000003g0730' => 'nta', 'Nitab4.5_0000137g0020' => 'nta', 'Nitab4.5_0000721g0210' => 'nta', 'Nitab4.5_0000723g0050' => 'nta', 'Nitab4.5_0000913g0070' => 'nta', 'Nitab4.5_0001332g0040' => 'nta', 'Nitab4.5_0001771g0050' => 'nta', 'Nitab4.5_0001918g0050' => 'nta', 'Nitab4.5_0002686g0030' => 'nta', 'Nitab4.5_0003156g0020' => 'nta', 'Nitab4.5_0003383g0040' => 'nta', 'Nitab4.5_0003918g0010' => 'nta', 'Nitab4.5_0006760g0010' => 'nta', 'Nn1g05981' => 'nnu', 'Nn1g06288' => 'nnu', 'Nn3g16371' => 'nnu', 'Nn3g16786' => 'nnu', 'Nn4g22232' => 'nnu', 'Oeu005144.1' => 'oeu', 'Oeu005145.1' => 'oeu', 'Oeu011348.1' => 'oeu', 'Oeu016415.1' => 'oeu', 'Oeu023501.1' => 'oeu', 'Oeu044473.1' => 'oeu', 'Oeu048892.2' => 'oeu', 'Os01g0549200' => 'osa', 'Os02g0469300' => 'osa', 'Os04g0311100' => 'osa', 'Os06g0474900' => 'osa', 'Os10g0181700' => 'osa', 'Os11g0454800' => 'osa', 'Peaxi162Scf00037g00714' => 'pax', 'Peaxi162Scf00084g01217' => 'pax', 'Peaxi162Scf00257g00217' => 'pax', 'Peaxi162Scf00516g00215' => 'pax', 'Peaxi162Scf00689g00123' => 'pax', 'PGR044G2719' => 'pgr', 'PGR083G1360' => 'pgr', 'PGR102G2849' => 'pgr', 'PGR119G2534' => 'pgr', 'PGSC0003DMG400003538' => 'stu', 'PGSC0003DMG400028138' => 'stu', 'PGSC0003DMG400031732' => 'stu', 'PGSC0003DMG400038165' => 'stu', 'Phvul.002G284600' => 'pvu', 'Phvul.003G258200' => 'pvu', 'Phvul.009G176500' => 'pvu', 'Potri.003G167201' => 'ptr', 'Potri.005G118400' => 'ptr', 'Potri.012G089000' => 'ptr', 'Potri.012G102800' => 'ptr', 'Potri.015G079400' => 'ptr', 'Potri.015G100900' => 'ptr', 'Pp3c14_9810' => 'ppa', 'Pp3c15_10450' => 'ppa', 'Pp3c20_19150' => 'ppa', 'Pp3c23_12740' => 'ppa', 'Pp3c23_6310' => 'ppa', 'Pp3c24_3720' => 'ppa', 'Pp3c27_2580' => 'ppa', 'Pp3c9_8990' => 'ppa', 'PRCOL_00002854' => 'pco', 'Prupe.1G221200' => 'ppe', 'Prupe.3G289000' => 'ppe', 'Prupe.5G147000' => 'ppe', 'Prupe.6G157300' => 'ppe', 'Prupe.7G163400' => 'ppe', 'Psat0s2177g0040' => 'psa', 'Psat3g174760' => 'psa', 'Psat3g192160' => 'psa', 'Psat4g058520' => 'psa', 'Psat4g096840' => 'psa', 'Psat7g037320' => 'psa', 'PSO017G1274' => 'pso', 'PSO017G5166' => 'pso', 'PSO063G4558' => 'pso', 'PSO170G4458' => 'pso', 'PSO170G5005' => 'pso', 'PSO210G6156' => 'pso', 'PSO210G6635' => 'pso', 'PSO210G7397' => 'pso', 'PSO210G7700' => 'pso', 'PSO455G0035' => 'pso', 'PSO455G0180' => 'pso', 'PSO478G4515' => 'pso', 'PSO832G1305' => 'pso', 'PSO832G3489' => 'pso', 'QL02p075247' => 'qlo', 'QL03p051148' => 'qlo', 'QL05p010313' => 'qlo', 'QL06p034627' => 'qlo', 'QL10p001889' => 'qlo', 'QL10p010846' => 'qlo', 'RcHm_v2.0_Chr1g0350621' => 'rch', 'RcHm_v2.0_Chr1g0350641' => 'rch', 'RcHm_v2.0_Chr2g0092891' => 'rch', 'RcHm_v2.0_Chr2g0100251' => 'rch', 'RcHm_v2.0_Chr2g0158661' => 'rch', 'RcHm_v2.0_Chr2g0172741' => 'rch', 'RcHm_v2.0_Chr4g0429571' => 'rch', 'RcHm_v2.0_Chr5g0042471' => 'rch', 'RcHm_v2.0_Chr7g0189451' => 'rch', 'Rhsim08G0052000' => 'rsi', 'Rhsim08G0174400' => 'rsi', 'Rhsim08G0193200' => 'rsi', 'Rhsim10G0214800' => 'rsi', 'Rhsim10G0214900' => 'rsi', 'Rhsim10G0215000' => 'rsi', 'Rhsim12G0022900' => 'rsi', 'Rhsim12G0177500' => 'rsi', 'Rhsim12G0177700' => 'rsi', 'Sabra03G0122600' => 'sbr', 'Sabra05G0097400' => 'sbr', 'Sabra12G0064100' => 'sbr', 'Sabra15G0121300' => 'sbr', 'SalBow2G0642' => 'sbo', 'SalBow5G2667' => 'sbo', 'SalBow5G4873' => 'sbo', 'SalBow8G2395' => 'sbo', 'Sc03g0003290' => 'sci', 'Sc10g0010130' => 'sci', 'Sc22g0003650' => 'sci', 'Sed0001603' => 'sed', 'Sed0004259' => 'sed', 'Sed0006789' => 'sed', 'Sed0011838' => 'sed', 'Sed0012964' => 'sed', 'Sed0016383' => 'sed', 'Sed0019010' => 'sed', 'Sed0020188' => 'sed', 'SEGI_04702' => 'sgi', 'SEGI_17231' => 'sgi', 'SEGI_18877' => 'sgi', 'SEGI_25196' => 'sgi', 'SEGI_25515' => 'sgi', 'SEGI_28445' => 'sgi', 'SEGI_37452' => 'sgi', 'SGA_v2.0_scaffold188G40336' => 'sas', 'SGA_v2.0_scaffold228G43247' => 'sas', 'SGA_v2.0_scaffold280G46853' => 'sas', 'SGA_v2.0_scaffold34G13808' => 'sas', 'SGA_v2.0_scaffold40G15576' => 'sas', 'SGA_v2.0_scaffold611G53188' => 'sas', 'SGA_v2.0_scaffold78G25461' => 'sas', 'SGA_v2.0_scaffold90G27888' => 'sas', 'SHI08601' => 'shi', 'SHI08606' => 'shi', 'SHI17117' => 'shi', 'SHI17119' => 'shi', 'SMO118G0201' => 'smo', 'SMO169G0247' => 'smo', 'SMO176G0006' => 'smo', 'SMO176G0015' => 'smo', 'SMO202G0006' => 'smo', 'SMO240G0050' => 'smo', 'SMO286G0009' => 'smo', 'SMO338G0033' => 'smo', 'SMO356G0533' => 'smo', 'SMO364G0382' => 'smo', 'SMO367G0166' => 'smo', 'SMO367G1098' => 'smo', 'Solyc01g009920.3' => 'sly', 'Solyc01g099300.3' => 'sly', 'Solyc02g084700.3' => 'sly', 'Solyc03g097520.3' => 'sly', 'Solyc06g071580.3' => 'sly', 'Solyc10g081760.3' => 'sly', 'Sopen01g005480' => 'spe', 'Sopen01g042850' => 'spe', 'Sopen02g029370' => 'spe', 'Sopen03g028280' => 'spe', 'Sopen06g027870' => 'spe', 'Sopen10g032270' => 'spe', 'Sp5g18180' => 'spa', 'Sp6g12880' => 'spa', 'Sp6g30850' => 'spa', 'Sp7g22960' => 'spa', 'Sp7g34010' => 'spa', 'SpUn1326_0010' => 'spa', 'TAR371G0242' => 'tar', 'TAR622G0638' => 'tar', 'TAR628G1548' => 'tar', 'TAR629G1079' => 'tar', 'TAR629G3413' => 'tar', 'THA.LOC104804249' => 'tha', 'THA.LOC104808315' => 'tha', 'THA.LOC104809238' => 'tha', 'THA.LOC104825484' => 'tha', 'Thecc.01G025500' => 'tca', 'Thecc.03G015800' => 'tca', 'Thecc.03G018000' => 'tca', 'Thecc.03G134800' => 'tca', 'Thecc.04G014700' => 'tca', 'Thhalv10006991m.g' => 'esa', 'Thhalv10012707m.g' => 'esa', 'Thhalv10015739m.g' => 'esa', 'Thhalv10024553m.g' => 'esa', 'Thhalv10024673m.g' => 'esa', 'Thhalv10029187m.g' => 'esa', 'TPR.G12971' => 'tpr', 'TPR.G29396' => 'tpr', 'TPR.G33376' => 'tpr', 'TPR.G35508' => 'tpr', 'TPR.G35516' => 'tpr', 'TPR.G37317' => 'tpr', 'TPR.G37389' => 'tpr', 'TPR.G37523' => 'tpr', 'TPR.G559' => 'tpr', 'TWI14G0070' => 'twi', 'TWI14G0729' => 'twi', 'TWI18G0596' => 'twi', 'TWI39G0780' => 'twi', 'TWI39G0850' => 'twi', 'TWI73G1052' => 'twi', 'unitig_52.g17485' => 'ugi', 'unitig_61.g26355' => 'ugi', 'vmacro01040' => 'vma', 'vmacro16731' => 'vma', 'vmacro18270' => 'vma', 'vmacro19142' => 'vma', 'vmacro19407' => 'vma', 'vmacro19408' => 'vma', 'vmacro21899' => 'vma', 'vmacro21900' => 'vma', 'vmacro21901' => 'vma', 'VMungo0251G0490' => 'vmu', 'VMungo0251G1748' => 'vmu', 'VMungo1309G0421' => 'vmu', 'Zm00001eb086500' => 'zma', 'Zm00001eb150680' => 'zma', 'Zm00001eb162330' => 'zma', 'Zm00001eb203130' => 'zma', 'Zm00001eb369480' => 'zma', 'Zm00001eb382340' => 'zma', 'Zm00001eb416360' => 'zma' ), 'gf_id' => 'HOM05D000902', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000902' ), 'data_identifier' => 'HOM05D000902', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000902', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '663', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02470' => 'bna', 'A01p16260' => 'bna', 'A02p01680' => 'bna', 'A03p16600' => 'bna', 'A03p55660' => 'bna', 'A03p64160' => 'bna', 'A03p64170' => 'bna', 'A08p31900' => 'bna', 'A09p59530' => 'bna', 'A10p08230' => 'bna', 'A10p25090' => 'bna', 'Aa31LG3G7100' => 'aar', 'Aa31LG3G7110' => 'aar', 'Aa31LG6G13160' => 'aar', 'Aa31LG7G10770' => 'aar', 'Aa31LG7G3830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2723' => 'aag', 'Actinidia08045' => 'ach', 'Actinidia08888' => 'ach', 'Actinidia18333' => 'ach', 'Actinidia19334' => 'ach', 'Actinidia25552' => 'ach', 'Actinidia26089' => 'ach', 'Actinidia30615' => 'ach', 'Actinidia30616' => 'ach', 'Actinidia33083' => 'ach', 'Actinidia35762' => 'ach', 'Ah.02g110620' => 'amhyb', 'Ah.11g046390' => 'amhyb', 'AL1G31670' => 'aly', 'AL6G23730' => 'aly', 'AL7G14740' => 'aly', 'AL7G14750' => 'aly', 'AL7G14760' => 'aly', 'AL7G28220' => 'aly', 'AL8G24940' => 'aly', 'Aqoxy3G01665' => 'aox', 'Aqoxy3G02853' => 'aox', 'Aqoxy5G01513' => 'aox', 'Aqoxy5G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8SKA4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ75LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKDA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0LJZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7REX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZP4YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWX7I5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2QKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS0L9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPCD8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q161UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC7XCF' => 'arhy', 'AT1G19100' => 'ath', 'AT4G24970' => 'ath', 'AT4G36270' => 'ath', 'AT4G36280' => 'ath', 'AT4G36290' => 'ath', 'AT5G13130' => 'ath', 'AT5G50780' => 'ath', 'ATR0582G266' => 'atr', 'ATR0661G195' => 'atr', 'ATR1152G031' => 'atr', 'Atru.chr11.2382' => 'acertr', 'Atru.chr12.2337' => 'acertr', 'Atru.chr3.744' => 'acertr', 'Atru.chr6.1870' => 'acertr', 'Atru.chr9.2515' => 'acertr', 'AUR62004120' => 'cqu', 'AUR62005667' => 'cqu', 'AUR62007634' => 'cqu', 'AUR62008186' => 'cqu', 'AUR62008187' => 'cqu', 'AUR62008188' => 'cqu', 'AUR62027954' => 'cqu', 'AUR62028766' => 'cqu', 'AUR62028767' => 'cqu', 'AUR62028768' => 'cqu', 'AUR62028886' => 'cqu', 'AUR62029563' => 'cqu', 'AUR62038832' => 'cqu', 'BcaB01g04149' => 'bca', 'BcaB03g12940' => 'bca', 'BcaB03g13090' => 'bca', 'BcaB03g14466' => 'bca', 'BcaB05g24035' => 'bca', 'BcaC01g06050' => 'bca', 'BcaC04g19148' => 'bca', 'BcaC04g20761' => 'bca', 'BcaC06g32845' => 'bca', 'BcaC07g41274' => 'bca', 'BcaC09g50827' => 'bca', 'BcaNung00741' => 'bca', 'BcaNung00742' => 'bca', 'BcaNung01859' => 'bca', 'BcaNung03985' => 'bca', 'BcaNung03989' => 'bca', 'BcaNung05661' => 'bca', 'BolC1t00257H' => 'bol', 'BolC1t01956H' => 'bol', 'BolC2t06534H' => 'bol', 'BolC3t14334H' => 'bol', 'BolC5t30451H' => 'bol', 'BolC7t45880H' => 'bol', 'BolC7t46586H' => 'bol', 'BolC8t49301H' => 'bol', 'BolC8t51837H' => 'bol', 'BolC9t56822H' => 'bol', 'BolC9t59235H' => 'bol', 'BraA01t00234Z' => 'bra', 'BraA01t01563Z' => 'bra', 'BraA02t05147Z' => 'bra', 'BraA03t10947Z' => 'bra', 'BraA03t14633Z' => 'bra', 'BraA08t35112Z' => 'bra', 'BraA09t41330Z' => 'bra', 'BraA10t44570Z' => 'bra', 'C01p02670' => 'bna', 'C01p20260' => 'bna', 'C02p05890' => 'bna', 'C03p19530' => 'bna', 'C05p17470' => 'bna', 'C07p53900' => 'bna', 'C07p61630' => 'bna', 'C08p16800' => 'bna', 'C08p42810' => 'bna', 'C09p39480' => 'bna', 'C09p63980' => 'bna', 'CAN.G1001.7' => 'can', 'CAN.G1034.55' => 'can', 'CAN.G143.7' => 'can', 'CAN.G3340.1' => 'can', 'CAN.G358.19' => 'can', 'CAN.G373.2' => 'can', 'CAN.G674.16' => 'can', 'CAN.G674.17' => 'can', 'CAN.G674.18' => 'can', 'CAN.G732.2' => 'can', 'CAN.G732.3' => 'can', 'CAN.G993.39' => 'can', 'CANSAT01G2052' => 'cansat', 'CANSAT80G0070' => 'cansat', 'CANSAT80G0483' => 'cansat', 'CANSAT80G0625' => 'cansat', 'CARHR019690' => 'chi', 'CARHR080280' => 'chi', 'CARHR152750' => 'chi', 'CARHR152760' => 'chi', 'CARHR152770' => 'chi', 'CARHR200340' => 'chi', 'CARHR232370' => 'chi', 'CARHR244670' => 'chi', 'CARHR244680' => 'chi', 'CARHR257520' => 'chi', 'Carub.0001s1872' => 'cru', 'Carub.0006s1130' => 'cru', 'Carub.0007s0396' => 'cru', 'Carub.0007s0397' => 'cru', 'Carub.0007s1608' => 'cru', 'Carub.0008s1068' => 'cru', 'Carub.0008s1077' => 'cru', 'Ca_16158_v3' => 'car', 'Ca_17571_v3' => 'car', 'Ca_21936_v3' => 'car', 'Ca_22350_v3' => 'car', 'CBR_g22445' => 'cbr', 'CBR_g26290' => 'cbr', 'Cc04_g09610' => 'ccan', 'Cc04_g12280' => 'ccan', 'Cc07_g10230' => 'ccan', 'CDE02G0093' => 'cde', 'CDE02G0701' => 'cde', 'CDE04G1050' => 'cde', 'CDE05G1833' => 'cde', 'CDE05G3058' => 'cde', 'CDE05G3380' => 'cde', 'CDE06G0536' => 'cde', 'Cfa006923' => 'cfa', 'Cfa009402' => 'cfa', 'Cfa018751' => 'cfa', 'Cfa019164' => 'cfa', 'Cfa022935' => 'cfa', 'Ciclev10019081m.g' => 'ccl', 'Ciclev10025076m.g' => 'ccl', 'Ciclev10030712m.g' => 'ccl', 'Ciclev10033760m.g' => 'ccl', 'CiPaw.05G105600' => 'cil', 'CiPaw.08G136700' => 'cil', 'CiPaw.11G003900' => 'cil', 'CiPaw.11G023700' => 'cil', 'CiPaw.12G003700' => 'cil', 'ClCG06G017100' => 'cla', 'ClCG06G018110' => 'cla', 'ClCG07G008800' => 'cla', 'ClCG07G015330' => 'cla', 'COL.COLO4_13698' => 'col', 'COL.COLO4_16659' => 'col', 'COL.COLO4_21986' => 'col', 'COL.COLO4_24049' => 'col', 'COL.COLO4_29061' => 'col', 'COL.COLO4_29075' => 'col', 'COL.COLO4_30094' => 'col', 'Cpa.g.c33689' => 'cpa', 'Cpa.g.sc108.39' => 'cpa', 'Cpa.g.sc108.41' => 'cpa', 'Cpa.g.sc1163.1' => 'cpa', 'Cpa.g.sc4.155' => 'cpa', 'Cpa.g.sc6.194' => 'cpa', 'CsaV3_1G000340' => 'csa', 'CsaV3_1G001400' => 'csa', 'CsaV3_4G002220' => 'csa', 'CsaV3_4G005370' => 'csa', 'CSS0007487' => 'camsi', 'CSS0008066' => 'camsi', 'CSS0009120' => 'camsi', 'CSS0015512' => 'camsi', 'CSS0022409' => 'camsi', 'CSS0025358' => 'camsi', 'CSS0044547' => 'camsi', 'DCAR_013057' => 'dca', 'DCAR_015058' => 'dca', 'DCAR_016027' => 'dca', 'DCAR_017327' => 'dca', 'DCAR_020743' => 'dca', 'DCAR_026157' => 'dca', 'DCAR_032339' => 'dca', 'DCAR_032340' => 'dca', 'Dinv11200' => 'din', 'Dinv11201' => 'din', 'Dinv20631' => 'din', 'Dinv23182' => 'din', 'Dinv33466' => 'din', 'Dinv33583' => 'din', 'Dinv38565' => 'din', 'Duzib068G0200' => 'dzi', 'Duzib147G0132' => 'dzi', 'Duzib147G0635' => 'dzi', 'Duzib205G1670' => 'dzi', 'Duzib251G0606' => 'dzi', 'ECA232G3336' => 'eca', 'ECA232G3763' => 'eca', 'ECA232G4845' => 'eca', 'ECA234G1607' => 'eca', 'ECA246G0932' => 'eca', 'ECA247G0781' => 'eca', 'ECA247G1932' => 'eca', 'ECA247G2079' => 'eca', 'ECA247G3338' => 'eca', 'ECA247G4115' => 'eca', 'EL10Ac3g06552' => 'bvu', 'EL10Ac5g10721' => 'bvu', 'EL10Ac5g10722' => 'bvu', 'EL10Ac5g10723' => 'bvu', 'EL10Ac5g11361' => 'bvu', 'EL10Ac6g13553' => 'bvu', 'EL10As8g23872' => 'bvu', 'Eucgr.B00250' => 'egr', 'Eucgr.B00251' => 'egr', 'Eucgr.B03533' => 'egr', 'Eucgr.I02381' => 'egr', 'Eucgr.K02700' => 'egr', 'FAN02G0174' => 'fan', 'FAN02G3146' => 'fan', 'FAN04G1672' => 'fan', 'FAN04G2273' => 'fan', 'FAN05G2791' => 'fan', 'FAN05G4035' => 'fan', 'FAN07G0834' => 'fan', 'FAN08G1198' => 'fan', 'FAN09G4182' => 'fan', 'FAN12G0496' => 'fan', 'FAN13G1027' => 'fan', 'FAN13G2951' => 'fan', 'FAN14G0705' => 'fan', 'FAN14G0720' => 'fan', 'FAN17G0201' => 'fan', 'FAN17G2665' => 'fan', 'FAN18G1456' => 'fan', 'FAN18G1525' => 'fan', 'FAN18G3500' => 'fan', 'FAN28G2670' => 'fan', 'FvH4_1g12391' => 'fve', 'FvH4_4g23220' => 'fve', 'FvH4_5g08810' => 'fve', 'FvH4_5g28960' => 'fve', 'FvH4_6g42820' => 'fve', 'FvH4_6g51110' => 'fve', 'Glyma.02G051802' => 'gma', 'Glyma.04G185300' => 'gma', 'Glyma.05G202900' => 'gma', 'Glyma.08G010300' => 'gma', 'Glyma.16G131900' => 'gma', 'Glyma.17G087900' => 'gma', 'Gohir.A07G048600' => 'ghi', 'Gohir.A11G179000' => 'ghi', 'Gohir.A12G140900' => 'ghi', 'Gohir.A12G140950' => 'ghi', 'Gohir.A12G191700' => 'ghi', 'Gohir.A13G086300' => 'ghi', 'Gohir.D07G052900' => 'ghi', 'Gohir.D11G186600' => 'ghi', 'Gohir.D12G145575' => 'ghi', 'Gohir.D12G145650' => 'ghi', 'Gohir.D12G145725' => 'ghi', 'Gohir.D12G194050' => 'ghi', 'Gohir.D13G091800' => 'ghi', 'Gorai.001G055900' => 'gra', 'Gorai.007G198400' => 'gra', 'Gorai.008G157000' => 'gra', 'Gorai.008G157100' => 'gra', 'Gorai.008G208700' => 'gra', 'Gorai.010G138700' => 'gra', 'GSVIVG01000977001' => 'vvi', 'GSVIVG01007708001' => 'vvi', 'GSVIVG01008587001' => 'vvi', 'GSVIVG01018849001' => 'vvi', 'GSVIVG01032432001' => 'vvi', 'HanXRQChr02g0034131' => 'han', 'HanXRQChr02g0035981' => 'han', 'HanXRQChr02g0035991' => 'han', 'HanXRQChr05g0155611' => 'han', 'HanXRQChr05g0155621' => 'han', 'HanXRQChr08g0236501' => 'han', 'HanXRQChr09g0261321' => 'han', 'HanXRQChr09g0272081' => 'han', 'HanXRQChr10g0310741' => 'han', 'HanXRQChr11g0325591' => 'han', 'HanXRQChr12g0385691' => 'han', 'HanXRQChr13g0387801' => 'han', 'HanXRQChr15g0463011' => 'han', 'Haze_03826' => 'cav', 'Haze_03827' => 'cav', 'Haze_07183' => 'cav', 'Haze_07537' => 'cav', 'Haze_07539' => 'cav', 'Haze_12461' => 'cav', 'Haze_16115' => 'cav', 'Haze_16808' => 'cav', 'Haze_18531' => 'cav', 'Hma1.2p1_0046F.1_g026700' => 'hma', 'Hma1.2p1_0046F.1_g026710' => 'hma', 'Hma1.2p1_0168F.1_g074340' => 'hma', 'Hma1.2p1_0266F.1_g107030' => 'hma', 'Hma1.2p1_0266F.1_g107060' => 'hma', 'Hma1.2p1_0275F.1_g110510' => 'hma', 'Hma1.2p1_0592F.1_g185490' => 'hma', 'Hma1.2p1_0592F.1_g185500' => 'hma', 'Hma1.2p1_0592F.1_g185510' => 'hma', 'Hma1.2p1_0592F.1_g185520' => 'hma', 'Hma1.2p1_0592F.1_g185530' => 'hma', 'Hma1.2p1_0818F.1_g223450' => 'hma', 'HPP92_009708' => 'vpl', 'HPP92_009793' => 'vpl', 'HPP92_009796' => 'vpl', 'HPP92_009797' => 'vpl', 'HPP92_014940' => 'vpl', 'HPP92_014988' => 'vpl', 'Hund02463' => 'sun', 'Hund02760' => 'sun', 'Hund05071' => 'sun', 'Hund10108' => 'sun', 'Hund11204' => 'sun', 'Hund14016' => 'sun', 'Hund16464' => 'sun', 'Lalb_Chr09g0333391' => 'lal', 'Lalb_Chr11g0070461' => 'lal', 'Lalb_Chr12g0201671' => 'lal', 'Lalb_Chr13g0297161' => 'lal', 'Lj1g0002823' => 'lja', 'Lj3C1074T6' => 'lonja', 'Lj4A212T28' => 'lonja', 'Lj4g0005516' => 'lja', 'Lj4g0013705' => 'lja', 'Lj4g0027865' => 'lja', 'Lj5C92G16' => 'lonja', 'Lj5C92T12' => 'lonja', 'Lj7C596T3' => 'lonja', 'Lj9A446G59' => 'lonja', 'Lj9A482G21' => 'lonja', 'Lsat_1_v5_gn_1_28261' => 'lsa', 'Lsat_1_v5_gn_1_28281' => 'lsa', 'Lsat_1_v5_gn_1_32721' => 'lsa', 'Lsat_1_v5_gn_4_151760' => 'lsa', 'Lsat_1_v5_gn_4_2120' => 'lsa', 'Lsat_1_v5_gn_4_75761' => 'lsa', 'Lsat_1_v5_gn_5_10920' => 'lsa', 'Manes.02G099900' => 'mes', 'Manes.11G096200' => 'mes', 'Manes.12G007200' => 'mes', 'Manes.14G048300' => 'mes', 'Manes.17G114700' => 'mes', 'Mapoly0002s0070' => 'mpo', 'Mapoly0029s0099' => 'mpo', 'MBI07_g24742_MAGBIO' => 'mbi', 'MBI10_g27988_MAGBIO' => 'mbi', 'MBI11_g13057_MAGBIO' => 'mbi', 'MD02G1137200' => 'mdo', 'MD06G1137200' => 'mdo', 'MD07G1122300' => 'mdo', 'MD09G1078200' => 'mdo', 'MD13G1123700' => 'mdo', 'MD14G1151900' => 'mdo', 'MD17G1030900' => 'mdo', 'MD17G1068200' => 'mdo', 'MD17G1068600' => 'mdo', 'Medtr3g077540' => 'mtr', 'Medtr4g105530' => 'mtr', 'Medtr8g076580' => 'mtr', 'Medtr8g076590' => 'mtr', 'Medtr8g096410' => 'mtr', 'MELO3C016411.2' => 'cme', 'MELO3C017780.2' => 'cme', 'MELO3C022560.2' => 'cme', 'MELO3C026187.2' => 'cme', 'MELO3C026286.2' => 'cme', 'MELO3C032854.2' => 'cme', 'Migut.H02495' => 'egut', 'Migut.I00561' => 'egut', 'Migut.K01015' => 'egut', 'Migut.K01016' => 'egut', 'Migut.L00743' => 'egut', 'Migut.L00744' => 'egut', 'Migut.L00746' => 'egut', 'Migut.L00798' => 'egut', 'Migut.L00799' => 'egut', 'Migut.N02096' => 'egut', 'MSTRG.11259' => 'ama', 'MSTRG.23142' => 'ama', 'MSTRG.2499' => 'ama', 'Nitab4.5_0000003g0730' => 'nta', 'Nitab4.5_0000137g0020' => 'nta', 'Nitab4.5_0000721g0210' => 'nta', 'Nitab4.5_0000723g0050' => 'nta', 'Nitab4.5_0000913g0070' => 'nta', 'Nitab4.5_0001332g0040' => 'nta', 'Nitab4.5_0001771g0050' => 'nta', 'Nitab4.5_0001918g0050' => 'nta', 'Nitab4.5_0002686g0030' => 'nta', 'Nitab4.5_0003156g0020' => 'nta', 'Nitab4.5_0003383g0040' => 'nta', 'Nitab4.5_0003918g0010' => 'nta', 'Nitab4.5_0006760g0010' => 'nta', 'Nn1g05981' => 'nnu', 'Nn1g06288' => 'nnu', 'Nn3g16371' => 'nnu', 'Nn3g16786' => 'nnu', 'Nn4g22232' => 'nnu', 'Oeu005144.1' => 'oeu', 'Oeu005145.1' => 'oeu', 'Oeu011348.1' => 'oeu', 'Oeu016415.1' => 'oeu', 'Oeu023501.1' => 'oeu', 'Oeu044473.1' => 'oeu', 'Oeu048892.2' => 'oeu', 'Os01g0549200' => 'osa', 'Os02g0469300' => 'osa', 'Os04g0311100' => 'osa', 'Os06g0474900' => 'osa', 'Os10g0181700' => 'osa', 'Os11g0454800' => 'osa', 'Peaxi162Scf00037g00714' => 'pax', 'Peaxi162Scf00084g01217' => 'pax', 'Peaxi162Scf00257g00217' => 'pax', 'Peaxi162Scf00516g00215' => 'pax', 'Peaxi162Scf00689g00123' => 'pax', 'PGR044G2719' => 'pgr', 'PGR083G1360' => 'pgr', 'PGR102G2849' => 'pgr', 'PGR119G2534' => 'pgr', 'PGSC0003DMG400003538' => 'stu', 'PGSC0003DMG400028138' => 'stu', 'PGSC0003DMG400031732' => 'stu', 'PGSC0003DMG400038165' => 'stu', 'Phvul.002G284600' => 'pvu', 'Phvul.003G258200' => 'pvu', 'Phvul.009G176500' => 'pvu', 'Potri.003G167201' => 'ptr', 'Potri.005G118400' => 'ptr', 'Potri.012G089000' => 'ptr', 'Potri.012G102800' => 'ptr', 'Potri.015G079400' => 'ptr', 'Potri.015G100900' => 'ptr', 'Pp3c14_9810' => 'ppa', 'Pp3c15_10450' => 'ppa', 'Pp3c20_19150' => 'ppa', 'Pp3c23_12740' => 'ppa', 'Pp3c23_6310' => 'ppa', 'Pp3c24_3720' => 'ppa', 'Pp3c27_2580' => 'ppa', 'Pp3c9_8990' => 'ppa', 'PRCOL_00002854' => 'pco', 'Prupe.1G221200' => 'ppe', 'Prupe.3G289000' => 'ppe', 'Prupe.5G147000' => 'ppe', 'Prupe.6G157300' => 'ppe', 'Prupe.7G163400' => 'ppe', 'Psat0s2177g0040' => 'psa', 'Psat3g174760' => 'psa', 'Psat3g192160' => 'psa', 'Psat4g058520' => 'psa', 'Psat4g096840' => 'psa', 'Psat7g037320' => 'psa', 'PSO017G1274' => 'pso', 'PSO017G5166' => 'pso', 'PSO063G4558' => 'pso', 'PSO170G4458' => 'pso', 'PSO170G5005' => 'pso', 'PSO210G6156' => 'pso', 'PSO210G6635' => 'pso', 'PSO210G7397' => 'pso', 'PSO210G7700' => 'pso', 'PSO455G0035' => 'pso', 'PSO455G0180' => 'pso', 'PSO478G4515' => 'pso', 'PSO832G1305' => 'pso', 'PSO832G3489' => 'pso', 'QL02p075247' => 'qlo', 'QL03p051148' => 'qlo', 'QL05p010313' => 'qlo', 'QL06p034627' => 'qlo', 'QL10p001889' => 'qlo', 'QL10p010846' => 'qlo', 'RcHm_v2.0_Chr1g0350621' => 'rch', 'RcHm_v2.0_Chr1g0350641' => 'rch', 'RcHm_v2.0_Chr2g0092891' => 'rch', 'RcHm_v2.0_Chr2g0100251' => 'rch', 'RcHm_v2.0_Chr2g0158661' => 'rch', 'RcHm_v2.0_Chr2g0172741' => 'rch', 'RcHm_v2.0_Chr4g0429571' => 'rch', 'RcHm_v2.0_Chr5g0042471' => 'rch', 'RcHm_v2.0_Chr7g0189451' => 'rch', 'Rhsim08G0052000' => 'rsi', 'Rhsim08G0174400' => 'rsi', 'Rhsim08G0193200' => 'rsi', 'Rhsim10G0214800' => 'rsi', 'Rhsim10G0214900' => 'rsi', 'Rhsim10G0215000' => 'rsi', 'Rhsim12G0022900' => 'rsi', 'Rhsim12G0177500' => 'rsi', 'Rhsim12G0177700' => 'rsi', 'Sabra03G0122600' => 'sbr', 'Sabra05G0097400' => 'sbr', 'Sabra12G0064100' => 'sbr', 'Sabra15G0121300' => 'sbr', 'SalBow2G0642' => 'sbo', 'SalBow5G2667' => 'sbo', 'SalBow5G4873' => 'sbo', 'SalBow8G2395' => 'sbo', 'Sc03g0003290' => 'sci', 'Sc10g0010130' => 'sci', 'Sc22g0003650' => 'sci', 'Sed0001603' => 'sed', 'Sed0004259' => 'sed', 'Sed0006789' => 'sed', 'Sed0011838' => 'sed', 'Sed0012964' => 'sed', 'Sed0016383' => 'sed', 'Sed0019010' => 'sed', 'Sed0020188' => 'sed', 'SEGI_04702' => 'sgi', 'SEGI_17231' => 'sgi', 'SEGI_18877' => 'sgi', 'SEGI_25196' => 'sgi', 'SEGI_25515' => 'sgi', 'SEGI_28445' => 'sgi', 'SEGI_37452' => 'sgi', 'SGA_v2.0_scaffold188G40336' => 'sas', 'SGA_v2.0_scaffold228G43247' => 'sas', 'SGA_v2.0_scaffold280G46853' => 'sas', 'SGA_v2.0_scaffold34G13808' => 'sas', 'SGA_v2.0_scaffold40G15576' => 'sas', 'SGA_v2.0_scaffold611G53188' => 'sas', 'SGA_v2.0_scaffold78G25461' => 'sas', 'SGA_v2.0_scaffold90G27888' => 'sas', 'SHI08601' => 'shi', 'SHI08606' => 'shi', 'SHI17117' => 'shi', 'SHI17119' => 'shi', 'SMO118G0201' => 'smo', 'SMO169G0247' => 'smo', 'SMO176G0006' => 'smo', 'SMO176G0015' => 'smo', 'SMO202G0006' => 'smo', 'SMO240G0050' => 'smo', 'SMO286G0009' => 'smo', 'SMO338G0033' => 'smo', 'SMO356G0533' => 'smo', 'SMO364G0382' => 'smo', 'SMO367G0166' => 'smo', 'SMO367G1098' => 'smo', 'Solyc01g009920.3' => 'sly', 'Solyc01g099300.3' => 'sly', 'Solyc02g084700.3' => 'sly', 'Solyc03g097520.3' => 'sly', 'Solyc06g071580.3' => 'sly', 'Solyc10g081760.3' => 'sly', 'Sopen01g005480' => 'spe', 'Sopen01g042850' => 'spe', 'Sopen02g029370' => 'spe', 'Sopen03g028280' => 'spe', 'Sopen06g027870' => 'spe', 'Sopen10g032270' => 'spe', 'Sp5g18180' => 'spa', 'Sp6g12880' => 'spa', 'Sp6g30850' => 'spa', 'Sp7g22960' => 'spa', 'Sp7g34010' => 'spa', 'SpUn1326_0010' => 'spa', 'TAR371G0242' => 'tar', 'TAR622G0638' => 'tar', 'TAR628G1548' => 'tar', 'TAR629G1079' => 'tar', 'TAR629G3413' => 'tar', 'THA.LOC104804249' => 'tha', 'THA.LOC104808315' => 'tha', 'THA.LOC104809238' => 'tha', 'THA.LOC104825484' => 'tha', 'Thecc.01G025500' => 'tca', 'Thecc.03G015800' => 'tca', 'Thecc.03G018000' => 'tca', 'Thecc.03G134800' => 'tca', 'Thecc.04G014700' => 'tca', 'Thhalv10006991m.g' => 'esa', 'Thhalv10012707m.g' => 'esa', 'Thhalv10015739m.g' => 'esa', 'Thhalv10024553m.g' => 'esa', 'Thhalv10024673m.g' => 'esa', 'Thhalv10029187m.g' => 'esa', 'TPR.G12971' => 'tpr', 'TPR.G29396' => 'tpr', 'TPR.G33376' => 'tpr', 'TPR.G35508' => 'tpr', 'TPR.G35516' => 'tpr', 'TPR.G37317' => 'tpr', 'TPR.G37389' => 'tpr', 'TPR.G37523' => 'tpr', 'TPR.G559' => 'tpr', 'TWI14G0070' => 'twi', 'TWI14G0729' => 'twi', 'TWI18G0596' => 'twi', 'TWI39G0780' => 'twi', 'TWI39G0850' => 'twi', 'TWI73G1052' => 'twi', 'unitig_52.g17485' => 'ugi', 'unitig_61.g26355' => 'ugi', 'vmacro01040' => 'vma', 'vmacro16731' => 'vma', 'vmacro18270' => 'vma', 'vmacro19142' => 'vma', 'vmacro19407' => 'vma', 'vmacro19408' => 'vma', 'vmacro21899' => 'vma', 'vmacro21900' => 'vma', 'vmacro21901' => 'vma', 'VMungo0251G0490' => 'vmu', 'VMungo0251G1748' => 'vmu', 'VMungo1309G0421' => 'vmu', 'Zm00001eb086500' => 'zma', 'Zm00001eb150680' => 'zma', 'Zm00001eb162330' => 'zma', 'Zm00001eb203130' => 'zma', 'Zm00001eb369480' => 'zma', 'Zm00001eb382340' => 'zma', 'Zm00001eb416360' => 'zma' ) $gf_id = 'HOM05D000902' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000902' ) $data_identifier = 'HOM05D000902' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 13, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 10, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 6, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 9, 'hma' => (int) 12, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 4, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 6, 'ppa' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 6, 'rch' => (int) 9, 'rsi' => (int) 9, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 12, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 3, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416360' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000902', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '663', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02470' => 'bna', 'A01p16260' => 'bna', 'A02p01680' => 'bna', 'A03p16600' => 'bna', 'A03p55660' => 'bna', 'A03p64160' => 'bna', 'A03p64170' => 'bna', 'A08p31900' => 'bna', 'A09p59530' => 'bna', 'A10p08230' => 'bna', 'A10p25090' => 'bna', 'Aa31LG3G7100' => 'aar', 'Aa31LG3G7110' => 'aar', 'Aa31LG6G13160' => 'aar', 'Aa31LG7G10770' => 'aar', 'Aa31LG7G3830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2723' => 'aag', 'Actinidia08045' => 'ach', 'Actinidia08888' => 'ach', 'Actinidia18333' => 'ach', 'Actinidia19334' => 'ach', 'Actinidia25552' => 'ach', 'Actinidia26089' => 'ach', 'Actinidia30615' => 'ach', 'Actinidia30616' => 'ach', 'Actinidia33083' => 'ach', 'Actinidia35762' => 'ach', 'Ah.02g110620' => 'amhyb', 'Ah.11g046390' => 'amhyb', 'AL1G31670' => 'aly', 'AL6G23730' => 'aly', 'AL7G14740' => 'aly', 'AL7G14750' => 'aly', 'AL7G14760' => 'aly', 'AL7G28220' => 'aly', 'AL8G24940' => 'aly', 'Aqoxy3G01665' => 'aox', 'Aqoxy3G02853' => 'aox', 'Aqoxy5G01513' => 'aox', 'Aqoxy5G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8SKA4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ75LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKDA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0LJZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7REX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZP4YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWX7I5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2QKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS0L9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPCD8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q161UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC7XCF' => 'arhy', 'AT1G19100' => 'ath', 'AT4G24970' => 'ath', 'AT4G36270' => 'ath', 'AT4G36280' => 'ath', 'AT4G36290' => 'ath', 'AT5G13130' => 'ath', 'AT5G50780' => 'ath', 'ATR0582G266' => 'atr', 'ATR0661G195' => 'atr', 'ATR1152G031' => 'atr', 'Atru.chr11.2382' => 'acertr', 'Atru.chr12.2337' => 'acertr', 'Atru.chr3.744' => 'acertr', 'Atru.chr6.1870' => 'acertr', 'Atru.chr9.2515' => 'acertr', 'AUR62004120' => 'cqu', 'AUR62005667' => 'cqu', 'AUR62007634' => 'cqu', 'AUR62008186' => 'cqu', 'AUR62008187' => 'cqu', 'AUR62008188' => 'cqu', 'AUR62027954' => 'cqu', 'AUR62028766' => 'cqu', 'AUR62028767' => 'cqu', 'AUR62028768' => 'cqu', 'AUR62028886' => 'cqu', 'AUR62029563' => 'cqu', 'AUR62038832' => 'cqu', 'BcaB01g04149' => 'bca', 'BcaB03g12940' => 'bca', 'BcaB03g13090' => 'bca', 'BcaB03g14466' => 'bca', 'BcaB05g24035' => 'bca', 'BcaC01g06050' => 'bca', 'BcaC04g19148' => 'bca', 'BcaC04g20761' => 'bca', 'BcaC06g32845' => 'bca', 'BcaC07g41274' => 'bca', 'BcaC09g50827' => 'bca', 'BcaNung00741' => 'bca', 'BcaNung00742' => 'bca', 'BcaNung01859' => 'bca', 'BcaNung03985' => 'bca', 'BcaNung03989' => 'bca', 'BcaNung05661' => 'bca', 'BolC1t00257H' => 'bol', 'BolC1t01956H' => 'bol', 'BolC2t06534H' => 'bol', 'BolC3t14334H' => 'bol', 'BolC5t30451H' => 'bol', 'BolC7t45880H' => 'bol', 'BolC7t46586H' => 'bol', 'BolC8t49301H' => 'bol', 'BolC8t51837H' => 'bol', 'BolC9t56822H' => 'bol', 'BolC9t59235H' => 'bol', 'BraA01t00234Z' => 'bra', 'BraA01t01563Z' => 'bra', 'BraA02t05147Z' => 'bra', 'BraA03t10947Z' => 'bra', 'BraA03t14633Z' => 'bra', 'BraA08t35112Z' => 'bra', 'BraA09t41330Z' => 'bra', 'BraA10t44570Z' => 'bra', 'C01p02670' => 'bna', 'C01p20260' => 'bna', 'C02p05890' => 'bna', 'C03p19530' => 'bna', 'C05p17470' => 'bna', 'C07p53900' => 'bna', 'C07p61630' => 'bna', 'C08p16800' => 'bna', 'C08p42810' => 'bna', 'C09p39480' => 'bna', 'C09p63980' => 'bna', 'CAN.G1001.7' => 'can', 'CAN.G1034.55' => 'can', 'CAN.G143.7' => 'can', 'CAN.G3340.1' => 'can', 'CAN.G358.19' => 'can', 'CAN.G373.2' => 'can', 'CAN.G674.16' => 'can', 'CAN.G674.17' => 'can', 'CAN.G674.18' => 'can', 'CAN.G732.2' => 'can', 'CAN.G732.3' => 'can', 'CAN.G993.39' => 'can', 'CANSAT01G2052' => 'cansat', 'CANSAT80G0070' => 'cansat', 'CANSAT80G0483' => 'cansat', 'CANSAT80G0625' => 'cansat', 'CARHR019690' => 'chi', 'CARHR080280' => 'chi', 'CARHR152750' => 'chi', 'CARHR152760' => 'chi', 'CARHR152770' => 'chi', 'CARHR200340' => 'chi', 'CARHR232370' => 'chi', 'CARHR244670' => 'chi', 'CARHR244680' => 'chi', 'CARHR257520' => 'chi', 'Carub.0001s1872' => 'cru', 'Carub.0006s1130' => 'cru', 'Carub.0007s0396' => 'cru', 'Carub.0007s0397' => 'cru', 'Carub.0007s1608' => 'cru', 'Carub.0008s1068' => 'cru', 'Carub.0008s1077' => 'cru', 'Ca_16158_v3' => 'car', 'Ca_17571_v3' => 'car', 'Ca_21936_v3' => 'car', 'Ca_22350_v3' => 'car', 'CBR_g22445' => 'cbr', 'CBR_g26290' => 'cbr', 'Cc04_g09610' => 'ccan', 'Cc04_g12280' => 'ccan', 'Cc07_g10230' => 'ccan', 'CDE02G0093' => 'cde', 'CDE02G0701' => 'cde', 'CDE04G1050' => 'cde', 'CDE05G1833' => 'cde', 'CDE05G3058' => 'cde', 'CDE05G3380' => 'cde', 'CDE06G0536' => 'cde', 'Cfa006923' => 'cfa', 'Cfa009402' => 'cfa', 'Cfa018751' => 'cfa', 'Cfa019164' => 'cfa', 'Cfa022935' => 'cfa', 'Ciclev10019081m.g' => 'ccl', 'Ciclev10025076m.g' => 'ccl', 'Ciclev10030712m.g' => 'ccl', 'Ciclev10033760m.g' => 'ccl', 'CiPaw.05G105600' => 'cil', 'CiPaw.08G136700' => 'cil', 'CiPaw.11G003900' => 'cil', 'CiPaw.11G023700' => 'cil', 'CiPaw.12G003700' => 'cil', 'ClCG06G017100' => 'cla', 'ClCG06G018110' => 'cla', 'ClCG07G008800' => 'cla', 'ClCG07G015330' => 'cla', 'COL.COLO4_13698' => 'col', 'COL.COLO4_16659' => 'col', 'COL.COLO4_21986' => 'col', 'COL.COLO4_24049' => 'col', 'COL.COLO4_29061' => 'col', 'COL.COLO4_29075' => 'col', 'COL.COLO4_30094' => 'col', 'Cpa.g.c33689' => 'cpa', 'Cpa.g.sc108.39' => 'cpa', 'Cpa.g.sc108.41' => 'cpa', 'Cpa.g.sc1163.1' => 'cpa', 'Cpa.g.sc4.155' => 'cpa', 'Cpa.g.sc6.194' => 'cpa', 'CsaV3_1G000340' => 'csa', 'CsaV3_1G001400' => 'csa', 'CsaV3_4G002220' => 'csa', 'CsaV3_4G005370' => 'csa', 'CSS0007487' => 'camsi', 'CSS0008066' => 'camsi', 'CSS0009120' => 'camsi', 'CSS0015512' => 'camsi', 'CSS0022409' => 'camsi', 'CSS0025358' => 'camsi', 'CSS0044547' => 'camsi', 'DCAR_013057' => 'dca', 'DCAR_015058' => 'dca', 'DCAR_016027' => 'dca', 'DCAR_017327' => 'dca', 'DCAR_020743' => 'dca', 'DCAR_026157' => 'dca', 'DCAR_032339' => 'dca', 'DCAR_032340' => 'dca', 'Dinv11200' => 'din', 'Dinv11201' => 'din', 'Dinv20631' => 'din', 'Dinv23182' => 'din', 'Dinv33466' => 'din', 'Dinv33583' => 'din', 'Dinv38565' => 'din', 'Duzib068G0200' => 'dzi', 'Duzib147G0132' => 'dzi', 'Duzib147G0635' => 'dzi', 'Duzib205G1670' => 'dzi', 'Duzib251G0606' => 'dzi', 'ECA232G3336' => 'eca', 'ECA232G3763' => 'eca', 'ECA232G4845' => 'eca', 'ECA234G1607' => 'eca', 'ECA246G0932' => 'eca', 'ECA247G0781' => 'eca', 'ECA247G1932' => 'eca', 'ECA247G2079' => 'eca', 'ECA247G3338' => 'eca', 'ECA247G4115' => 'eca', 'EL10Ac3g06552' => 'bvu', 'EL10Ac5g10721' => 'bvu', 'EL10Ac5g10722' => 'bvu', 'EL10Ac5g10723' => 'bvu', 'EL10Ac5g11361' => 'bvu', 'EL10Ac6g13553' => 'bvu', 'EL10As8g23872' => 'bvu', 'Eucgr.B00250' => 'egr', 'Eucgr.B00251' => 'egr', 'Eucgr.B03533' => 'egr', 'Eucgr.I02381' => 'egr', 'Eucgr.K02700' => 'egr', 'FAN02G0174' => 'fan', 'FAN02G3146' => 'fan', 'FAN04G1672' => 'fan', 'FAN04G2273' => 'fan', 'FAN05G2791' => 'fan', 'FAN05G4035' => 'fan', 'FAN07G0834' => 'fan', 'FAN08G1198' => 'fan', 'FAN09G4182' => 'fan', 'FAN12G0496' => 'fan', 'FAN13G1027' => 'fan', 'FAN13G2951' => 'fan', 'FAN14G0705' => 'fan', 'FAN14G0720' => 'fan', 'FAN17G0201' => 'fan', 'FAN17G2665' => 'fan', 'FAN18G1456' => 'fan', 'FAN18G1525' => 'fan', 'FAN18G3500' => 'fan', 'FAN28G2670' => 'fan', 'FvH4_1g12391' => 'fve', 'FvH4_4g23220' => 'fve', 'FvH4_5g08810' => 'fve', 'FvH4_5g28960' => 'fve', 'FvH4_6g42820' => 'fve', 'FvH4_6g51110' => 'fve', 'Glyma.02G051802' => 'gma', 'Glyma.04G185300' => 'gma', 'Glyma.05G202900' => 'gma', 'Glyma.08G010300' => 'gma', 'Glyma.16G131900' => 'gma', 'Glyma.17G087900' => 'gma', 'Gohir.A07G048600' => 'ghi', 'Gohir.A11G179000' => 'ghi', 'Gohir.A12G140900' => 'ghi', 'Gohir.A12G140950' => 'ghi', 'Gohir.A12G191700' => 'ghi', 'Gohir.A13G086300' => 'ghi', 'Gohir.D07G052900' => 'ghi', 'Gohir.D11G186600' => 'ghi', 'Gohir.D12G145575' => 'ghi', 'Gohir.D12G145650' => 'ghi', 'Gohir.D12G145725' => 'ghi', 'Gohir.D12G194050' => 'ghi', 'Gohir.D13G091800' => 'ghi', 'Gorai.001G055900' => 'gra', 'Gorai.007G198400' => 'gra', 'Gorai.008G157000' => 'gra', 'Gorai.008G157100' => 'gra', 'Gorai.008G208700' => 'gra', 'Gorai.010G138700' => 'gra', 'GSVIVG01000977001' => 'vvi', 'GSVIVG01007708001' => 'vvi', 'GSVIVG01008587001' => 'vvi', 'GSVIVG01018849001' => 'vvi', 'GSVIVG01032432001' => 'vvi', 'HanXRQChr02g0034131' => 'han', 'HanXRQChr02g0035981' => 'han', 'HanXRQChr02g0035991' => 'han', 'HanXRQChr05g0155611' => 'han', 'HanXRQChr05g0155621' => 'han', 'HanXRQChr08g0236501' => 'han', 'HanXRQChr09g0261321' => 'han', 'HanXRQChr09g0272081' => 'han', 'HanXRQChr10g0310741' => 'han', 'HanXRQChr11g0325591' => 'han', 'HanXRQChr12g0385691' => 'han', 'HanXRQChr13g0387801' => 'han', 'HanXRQChr15g0463011' => 'han', 'Haze_03826' => 'cav', 'Haze_03827' => 'cav', 'Haze_07183' => 'cav', 'Haze_07537' => 'cav', 'Haze_07539' => 'cav', 'Haze_12461' => 'cav', 'Haze_16115' => 'cav', 'Haze_16808' => 'cav', 'Haze_18531' => 'cav', 'Hma1.2p1_0046F.1_g026700' => 'hma', 'Hma1.2p1_0046F.1_g026710' => 'hma', 'Hma1.2p1_0168F.1_g074340' => 'hma', 'Hma1.2p1_0266F.1_g107030' => 'hma', 'Hma1.2p1_0266F.1_g107060' => 'hma', 'Hma1.2p1_0275F.1_g110510' => 'hma', 'Hma1.2p1_0592F.1_g185490' => 'hma', 'Hma1.2p1_0592F.1_g185500' => 'hma', 'Hma1.2p1_0592F.1_g185510' => 'hma', 'Hma1.2p1_0592F.1_g185520' => 'hma', 'Hma1.2p1_0592F.1_g185530' => 'hma', 'Hma1.2p1_0818F.1_g223450' => 'hma', 'HPP92_009708' => 'vpl', 'HPP92_009793' => 'vpl', 'HPP92_009796' => 'vpl', 'HPP92_009797' => 'vpl', 'HPP92_014940' => 'vpl', 'HPP92_014988' => 'vpl', 'Hund02463' => 'sun', 'Hund02760' => 'sun', 'Hund05071' => 'sun', 'Hund10108' => 'sun', 'Hund11204' => 'sun', 'Hund14016' => 'sun', 'Hund16464' => 'sun', 'Lalb_Chr09g0333391' => 'lal', 'Lalb_Chr11g0070461' => 'lal', 'Lalb_Chr12g0201671' => 'lal', 'Lalb_Chr13g0297161' => 'lal', 'Lj1g0002823' => 'lja', 'Lj3C1074T6' => 'lonja', 'Lj4A212T28' => 'lonja', 'Lj4g0005516' => 'lja', 'Lj4g0013705' => 'lja', 'Lj4g0027865' => 'lja', 'Lj5C92G16' => 'lonja', 'Lj5C92T12' => 'lonja', 'Lj7C596T3' => 'lonja', 'Lj9A446G59' => 'lonja', 'Lj9A482G21' => 'lonja', 'Lsat_1_v5_gn_1_28261' => 'lsa', 'Lsat_1_v5_gn_1_28281' => 'lsa', 'Lsat_1_v5_gn_1_32721' => 'lsa', 'Lsat_1_v5_gn_4_151760' => 'lsa', 'Lsat_1_v5_gn_4_2120' => 'lsa', 'Lsat_1_v5_gn_4_75761' => 'lsa', 'Lsat_1_v5_gn_5_10920' => 'lsa', 'Manes.02G099900' => 'mes', 'Manes.11G096200' => 'mes', 'Manes.12G007200' => 'mes', 'Manes.14G048300' => 'mes', 'Manes.17G114700' => 'mes', 'Mapoly0002s0070' => 'mpo', 'Mapoly0029s0099' => 'mpo', 'MBI07_g24742_MAGBIO' => 'mbi', 'MBI10_g27988_MAGBIO' => 'mbi', 'MBI11_g13057_MAGBIO' => 'mbi', 'MD02G1137200' => 'mdo', 'MD06G1137200' => 'mdo', 'MD07G1122300' => 'mdo', 'MD09G1078200' => 'mdo', 'MD13G1123700' => 'mdo', 'MD14G1151900' => 'mdo', 'MD17G1030900' => 'mdo', 'MD17G1068200' => 'mdo', 'MD17G1068600' => 'mdo', 'Medtr3g077540' => 'mtr', 'Medtr4g105530' => 'mtr', 'Medtr8g076580' => 'mtr', 'Medtr8g076590' => 'mtr', 'Medtr8g096410' => 'mtr', 'MELO3C016411.2' => 'cme', 'MELO3C017780.2' => 'cme', 'MELO3C022560.2' => 'cme', 'MELO3C026187.2' => 'cme', 'MELO3C026286.2' => 'cme', 'MELO3C032854.2' => 'cme', 'Migut.H02495' => 'egut', 'Migut.I00561' => 'egut', 'Migut.K01015' => 'egut', 'Migut.K01016' => 'egut', 'Migut.L00743' => 'egut', 'Migut.L00744' => 'egut', 'Migut.L00746' => 'egut', 'Migut.L00798' => 'egut', 'Migut.L00799' => 'egut', 'Migut.N02096' => 'egut', 'MSTRG.11259' => 'ama', 'MSTRG.23142' => 'ama', 'MSTRG.2499' => 'ama', 'Nitab4.5_0000003g0730' => 'nta', 'Nitab4.5_0000137g0020' => 'nta', 'Nitab4.5_0000721g0210' => 'nta', 'Nitab4.5_0000723g0050' => 'nta', 'Nitab4.5_0000913g0070' => 'nta', 'Nitab4.5_0001332g0040' => 'nta', 'Nitab4.5_0001771g0050' => 'nta', 'Nitab4.5_0001918g0050' => 'nta', 'Nitab4.5_0002686g0030' => 'nta', 'Nitab4.5_0003156g0020' => 'nta', 'Nitab4.5_0003383g0040' => 'nta', 'Nitab4.5_0003918g0010' => 'nta', 'Nitab4.5_0006760g0010' => 'nta', 'Nn1g05981' => 'nnu', 'Nn1g06288' => 'nnu', 'Nn3g16371' => 'nnu', 'Nn3g16786' => 'nnu', 'Nn4g22232' => 'nnu', 'Oeu005144.1' => 'oeu', 'Oeu005145.1' => 'oeu', 'Oeu011348.1' => 'oeu', 'Oeu016415.1' => 'oeu', 'Oeu023501.1' => 'oeu', 'Oeu044473.1' => 'oeu', 'Oeu048892.2' => 'oeu', 'Os01g0549200' => 'osa', 'Os02g0469300' => 'osa', 'Os04g0311100' => 'osa', 'Os06g0474900' => 'osa', 'Os10g0181700' => 'osa', 'Os11g0454800' => 'osa', 'Peaxi162Scf00037g00714' => 'pax', 'Peaxi162Scf00084g01217' => 'pax', 'Peaxi162Scf00257g00217' => 'pax', 'Peaxi162Scf00516g00215' => 'pax', 'Peaxi162Scf00689g00123' => 'pax', 'PGR044G2719' => 'pgr', 'PGR083G1360' => 'pgr', 'PGR102G2849' => 'pgr', 'PGR119G2534' => 'pgr', 'PGSC0003DMG400003538' => 'stu', 'PGSC0003DMG400028138' => 'stu', 'PGSC0003DMG400031732' => 'stu', 'PGSC0003DMG400038165' => 'stu', 'Phvul.002G284600' => 'pvu', 'Phvul.003G258200' => 'pvu', 'Phvul.009G176500' => 'pvu', 'Potri.003G167201' => 'ptr', 'Potri.005G118400' => 'ptr', 'Potri.012G089000' => 'ptr', 'Potri.012G102800' => 'ptr', 'Potri.015G079400' => 'ptr', 'Potri.015G100900' => 'ptr', 'Pp3c14_9810' => 'ppa', 'Pp3c15_10450' => 'ppa', 'Pp3c20_19150' => 'ppa', 'Pp3c23_12740' => 'ppa', 'Pp3c23_6310' => 'ppa', 'Pp3c24_3720' => 'ppa', 'Pp3c27_2580' => 'ppa', 'Pp3c9_8990' => 'ppa', 'PRCOL_00002854' => 'pco', 'Prupe.1G221200' => 'ppe', 'Prupe.3G289000' => 'ppe', 'Prupe.5G147000' => 'ppe', 'Prupe.6G157300' => 'ppe', 'Prupe.7G163400' => 'ppe', 'Psat0s2177g0040' => 'psa', 'Psat3g174760' => 'psa', 'Psat3g192160' => 'psa', 'Psat4g058520' => 'psa', 'Psat4g096840' => 'psa', 'Psat7g037320' => 'psa', 'PSO017G1274' => 'pso', 'PSO017G5166' => 'pso', 'PSO063G4558' => 'pso', 'PSO170G4458' => 'pso', 'PSO170G5005' => 'pso', 'PSO210G6156' => 'pso', 'PSO210G6635' => 'pso', 'PSO210G7397' => 'pso', 'PSO210G7700' => 'pso', 'PSO455G0035' => 'pso', 'PSO455G0180' => 'pso', 'PSO478G4515' => 'pso', 'PSO832G1305' => 'pso', 'PSO832G3489' => 'pso', 'QL02p075247' => 'qlo', 'QL03p051148' => 'qlo', 'QL05p010313' => 'qlo', 'QL06p034627' => 'qlo', 'QL10p001889' => 'qlo', 'QL10p010846' => 'qlo', 'RcHm_v2.0_Chr1g0350621' => 'rch', 'RcHm_v2.0_Chr1g0350641' => 'rch', 'RcHm_v2.0_Chr2g0092891' => 'rch', 'RcHm_v2.0_Chr2g0100251' => 'rch', 'RcHm_v2.0_Chr2g0158661' => 'rch', 'RcHm_v2.0_Chr2g0172741' => 'rch', 'RcHm_v2.0_Chr4g0429571' => 'rch', 'RcHm_v2.0_Chr5g0042471' => 'rch', 'RcHm_v2.0_Chr7g0189451' => 'rch', 'Rhsim08G0052000' => 'rsi', 'Rhsim08G0174400' => 'rsi', 'Rhsim08G0193200' => 'rsi', 'Rhsim10G0214800' => 'rsi', 'Rhsim10G0214900' => 'rsi', 'Rhsim10G0215000' => 'rsi', 'Rhsim12G0022900' => 'rsi', 'Rhsim12G0177500' => 'rsi', 'Rhsim12G0177700' => 'rsi', 'Sabra03G0122600' => 'sbr', 'Sabra05G0097400' => 'sbr', 'Sabra12G0064100' => 'sbr', 'Sabra15G0121300' => 'sbr', 'SalBow2G0642' => 'sbo', 'SalBow5G2667' => 'sbo', 'SalBow5G4873' => 'sbo', 'SalBow8G2395' => 'sbo', 'Sc03g0003290' => 'sci', 'Sc10g0010130' => 'sci', 'Sc22g0003650' => 'sci', 'Sed0001603' => 'sed', 'Sed0004259' => 'sed', 'Sed0006789' => 'sed', 'Sed0011838' => 'sed', 'Sed0012964' => 'sed', 'Sed0016383' => 'sed', 'Sed0019010' => 'sed', 'Sed0020188' => 'sed', 'SEGI_04702' => 'sgi', 'SEGI_17231' => 'sgi', 'SEGI_18877' => 'sgi', 'SEGI_25196' => 'sgi', 'SEGI_25515' => 'sgi', 'SEGI_28445' => 'sgi', 'SEGI_37452' => 'sgi', 'SGA_v2.0_scaffold188G40336' => 'sas', 'SGA_v2.0_scaffold228G43247' => 'sas', 'SGA_v2.0_scaffold280G46853' => 'sas', 'SGA_v2.0_scaffold34G13808' => 'sas', 'SGA_v2.0_scaffold40G15576' => 'sas', 'SGA_v2.0_scaffold611G53188' => 'sas', 'SGA_v2.0_scaffold78G25461' => 'sas', 'SGA_v2.0_scaffold90G27888' => 'sas', 'SHI08601' => 'shi', 'SHI08606' => 'shi', 'SHI17117' => 'shi', 'SHI17119' => 'shi', 'SMO118G0201' => 'smo', 'SMO169G0247' => 'smo', 'SMO176G0006' => 'smo', 'SMO176G0015' => 'smo', 'SMO202G0006' => 'smo', 'SMO240G0050' => 'smo', 'SMO286G0009' => 'smo', 'SMO338G0033' => 'smo', 'SMO356G0533' => 'smo', 'SMO364G0382' => 'smo', 'SMO367G0166' => 'smo', 'SMO367G1098' => 'smo', 'Solyc01g009920.3' => 'sly', 'Solyc01g099300.3' => 'sly', 'Solyc02g084700.3' => 'sly', 'Solyc03g097520.3' => 'sly', 'Solyc06g071580.3' => 'sly', 'Solyc10g081760.3' => 'sly', 'Sopen01g005480' => 'spe', 'Sopen01g042850' => 'spe', 'Sopen02g029370' => 'spe', 'Sopen03g028280' => 'spe', 'Sopen06g027870' => 'spe', 'Sopen10g032270' => 'spe', 'Sp5g18180' => 'spa', 'Sp6g12880' => 'spa', 'Sp6g30850' => 'spa', 'Sp7g22960' => 'spa', 'Sp7g34010' => 'spa', 'SpUn1326_0010' => 'spa', 'TAR371G0242' => 'tar', 'TAR622G0638' => 'tar', 'TAR628G1548' => 'tar', 'TAR629G1079' => 'tar', 'TAR629G3413' => 'tar', 'THA.LOC104804249' => 'tha', 'THA.LOC104808315' => 'tha', 'THA.LOC104809238' => 'tha', 'THA.LOC104825484' => 'tha', 'Thecc.01G025500' => 'tca', 'Thecc.03G015800' => 'tca', 'Thecc.03G018000' => 'tca', 'Thecc.03G134800' => 'tca', 'Thecc.04G014700' => 'tca', 'Thhalv10006991m.g' => 'esa', 'Thhalv10012707m.g' => 'esa', 'Thhalv10015739m.g' => 'esa', 'Thhalv10024553m.g' => 'esa', 'Thhalv10024673m.g' => 'esa', 'Thhalv10029187m.g' => 'esa', 'TPR.G12971' => 'tpr', 'TPR.G29396' => 'tpr', 'TPR.G33376' => 'tpr', 'TPR.G35508' => 'tpr', 'TPR.G35516' => 'tpr', 'TPR.G37317' => 'tpr', 'TPR.G37389' => 'tpr', 'TPR.G37523' => 'tpr', 'TPR.G559' => 'tpr', 'TWI14G0070' => 'twi', 'TWI14G0729' => 'twi', 'TWI18G0596' => 'twi', 'TWI39G0780' => 'twi', 'TWI39G0850' => 'twi', 'TWI73G1052' => 'twi', 'unitig_52.g17485' => 'ugi', 'unitig_61.g26355' => 'ugi', 'vmacro01040' => 'vma', 'vmacro16731' => 'vma', 'vmacro18270' => 'vma', 'vmacro19142' => 'vma', 'vmacro19407' => 'vma', 'vmacro19408' => 'vma', 'vmacro21899' => 'vma', 'vmacro21900' => 'vma', 'vmacro21901' => 'vma', 'VMungo0251G0490' => 'vmu', 'VMungo0251G1748' => 'vmu', 'VMungo1309G0421' => 'vmu', 'Zm00001eb086500' => 'zma', 'Zm00001eb150680' => 'zma', 'Zm00001eb162330' => 'zma', 'Zm00001eb203130' => 'zma', 'Zm00001eb369480' => 'zma', 'Zm00001eb382340' => 'zma', 'Zm00001eb416360' => 'zma' ), 'gf_id' => 'HOM05D000902', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000902' ), 'data_identifier' => 'HOM05D000902', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000902', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '663', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02470' => 'bna', 'A01p16260' => 'bna', 'A02p01680' => 'bna', 'A03p16600' => 'bna', 'A03p55660' => 'bna', 'A03p64160' => 'bna', 'A03p64170' => 'bna', 'A08p31900' => 'bna', 'A09p59530' => 'bna', 'A10p08230' => 'bna', 'A10p25090' => 'bna', 'Aa31LG3G7100' => 'aar', 'Aa31LG3G7110' => 'aar', 'Aa31LG6G13160' => 'aar', 'Aa31LG7G10770' => 'aar', 'Aa31LG7G3830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2723' => 'aag', 'Actinidia08045' => 'ach', 'Actinidia08888' => 'ach', 'Actinidia18333' => 'ach', 'Actinidia19334' => 'ach', 'Actinidia25552' => 'ach', 'Actinidia26089' => 'ach', 'Actinidia30615' => 'ach', 'Actinidia30616' => 'ach', 'Actinidia33083' => 'ach', 'Actinidia35762' => 'ach', 'Ah.02g110620' => 'amhyb', 'Ah.11g046390' => 'amhyb', 'AL1G31670' => 'aly', 'AL6G23730' => 'aly', 'AL7G14740' => 'aly', 'AL7G14750' => 'aly', 'AL7G14760' => 'aly', 'AL7G28220' => 'aly', 'AL8G24940' => 'aly', 'Aqoxy3G01665' => 'aox', 'Aqoxy3G02853' => 'aox', 'Aqoxy5G01513' => 'aox', 'Aqoxy5G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8SKA4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ75LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKDA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0LJZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7REX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZP4YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWX7I5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2QKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS0L9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPCD8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q161UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC7XCF' => 'arhy', 'AT1G19100' => 'ath', 'AT4G24970' => 'ath', 'AT4G36270' => 'ath', 'AT4G36280' => 'ath', 'AT4G36290' => 'ath', 'AT5G13130' => 'ath', 'AT5G50780' => 'ath', 'ATR0582G266' => 'atr', 'ATR0661G195' => 'atr', 'ATR1152G031' => 'atr', 'Atru.chr11.2382' => 'acertr', 'Atru.chr12.2337' => 'acertr', 'Atru.chr3.744' => 'acertr', 'Atru.chr6.1870' => 'acertr', 'Atru.chr9.2515' => 'acertr', 'AUR62004120' => 'cqu', 'AUR62005667' => 'cqu', 'AUR62007634' => 'cqu', 'AUR62008186' => 'cqu', 'AUR62008187' => 'cqu', 'AUR62008188' => 'cqu', 'AUR62027954' => 'cqu', 'AUR62028766' => 'cqu', 'AUR62028767' => 'cqu', 'AUR62028768' => 'cqu', 'AUR62028886' => 'cqu', 'AUR62029563' => 'cqu', 'AUR62038832' => 'cqu', 'BcaB01g04149' => 'bca', 'BcaB03g12940' => 'bca', 'BcaB03g13090' => 'bca', 'BcaB03g14466' => 'bca', 'BcaB05g24035' => 'bca', 'BcaC01g06050' => 'bca', 'BcaC04g19148' => 'bca', 'BcaC04g20761' => 'bca', 'BcaC06g32845' => 'bca', 'BcaC07g41274' => 'bca', 'BcaC09g50827' => 'bca', 'BcaNung00741' => 'bca', 'BcaNung00742' => 'bca', 'BcaNung01859' => 'bca', 'BcaNung03985' => 'bca', 'BcaNung03989' => 'bca', 'BcaNung05661' => 'bca', 'BolC1t00257H' => 'bol', 'BolC1t01956H' => 'bol', 'BolC2t06534H' => 'bol', 'BolC3t14334H' => 'bol', 'BolC5t30451H' => 'bol', 'BolC7t45880H' => 'bol', 'BolC7t46586H' => 'bol', 'BolC8t49301H' => 'bol', 'BolC8t51837H' => 'bol', 'BolC9t56822H' => 'bol', 'BolC9t59235H' => 'bol', 'BraA01t00234Z' => 'bra', 'BraA01t01563Z' => 'bra', 'BraA02t05147Z' => 'bra', 'BraA03t10947Z' => 'bra', 'BraA03t14633Z' => 'bra', 'BraA08t35112Z' => 'bra', 'BraA09t41330Z' => 'bra', 'BraA10t44570Z' => 'bra', 'C01p02670' => 'bna', 'C01p20260' => 'bna', 'C02p05890' => 'bna', 'C03p19530' => 'bna', 'C05p17470' => 'bna', 'C07p53900' => 'bna', 'C07p61630' => 'bna', 'C08p16800' => 'bna', 'C08p42810' => 'bna', 'C09p39480' => 'bna', 'C09p63980' => 'bna', 'CAN.G1001.7' => 'can', 'CAN.G1034.55' => 'can', 'CAN.G143.7' => 'can', 'CAN.G3340.1' => 'can', 'CAN.G358.19' => 'can', 'CAN.G373.2' => 'can', 'CAN.G674.16' => 'can', 'CAN.G674.17' => 'can', 'CAN.G674.18' => 'can', 'CAN.G732.2' => 'can', 'CAN.G732.3' => 'can', 'CAN.G993.39' => 'can', 'CANSAT01G2052' => 'cansat', 'CANSAT80G0070' => 'cansat', 'CANSAT80G0483' => 'cansat', 'CANSAT80G0625' => 'cansat', 'CARHR019690' => 'chi', 'CARHR080280' => 'chi', 'CARHR152750' => 'chi', 'CARHR152760' => 'chi', 'CARHR152770' => 'chi', 'CARHR200340' => 'chi', 'CARHR232370' => 'chi', 'CARHR244670' => 'chi', 'CARHR244680' => 'chi', 'CARHR257520' => 'chi', 'Carub.0001s1872' => 'cru', 'Carub.0006s1130' => 'cru', 'Carub.0007s0396' => 'cru', 'Carub.0007s0397' => 'cru', 'Carub.0007s1608' => 'cru', 'Carub.0008s1068' => 'cru', 'Carub.0008s1077' => 'cru', 'Ca_16158_v3' => 'car', 'Ca_17571_v3' => 'car', 'Ca_21936_v3' => 'car', 'Ca_22350_v3' => 'car', 'CBR_g22445' => 'cbr', 'CBR_g26290' => 'cbr', 'Cc04_g09610' => 'ccan', 'Cc04_g12280' => 'ccan', 'Cc07_g10230' => 'ccan', 'CDE02G0093' => 'cde', 'CDE02G0701' => 'cde', 'CDE04G1050' => 'cde', 'CDE05G1833' => 'cde', 'CDE05G3058' => 'cde', 'CDE05G3380' => 'cde', 'CDE06G0536' => 'cde', 'Cfa006923' => 'cfa', 'Cfa009402' => 'cfa', 'Cfa018751' => 'cfa', 'Cfa019164' => 'cfa', 'Cfa022935' => 'cfa', 'Ciclev10019081m.g' => 'ccl', 'Ciclev10025076m.g' => 'ccl', 'Ciclev10030712m.g' => 'ccl', 'Ciclev10033760m.g' => 'ccl', 'CiPaw.05G105600' => 'cil', 'CiPaw.08G136700' => 'cil', 'CiPaw.11G003900' => 'cil', 'CiPaw.11G023700' => 'cil', 'CiPaw.12G003700' => 'cil', 'ClCG06G017100' => 'cla', 'ClCG06G018110' => 'cla', 'ClCG07G008800' => 'cla', 'ClCG07G015330' => 'cla', 'COL.COLO4_13698' => 'col', 'COL.COLO4_16659' => 'col', 'COL.COLO4_21986' => 'col', 'COL.COLO4_24049' => 'col', 'COL.COLO4_29061' => 'col', 'COL.COLO4_29075' => 'col', 'COL.COLO4_30094' => 'col', 'Cpa.g.c33689' => 'cpa', 'Cpa.g.sc108.39' => 'cpa', 'Cpa.g.sc108.41' => 'cpa', 'Cpa.g.sc1163.1' => 'cpa', 'Cpa.g.sc4.155' => 'cpa', 'Cpa.g.sc6.194' => 'cpa', 'CsaV3_1G000340' => 'csa', 'CsaV3_1G001400' => 'csa', 'CsaV3_4G002220' => 'csa', 'CsaV3_4G005370' => 'csa', 'CSS0007487' => 'camsi', 'CSS0008066' => 'camsi', 'CSS0009120' => 'camsi', 'CSS0015512' => 'camsi', 'CSS0022409' => 'camsi', 'CSS0025358' => 'camsi', 'CSS0044547' => 'camsi', 'DCAR_013057' => 'dca', 'DCAR_015058' => 'dca', 'DCAR_016027' => 'dca', 'DCAR_017327' => 'dca', 'DCAR_020743' => 'dca', 'DCAR_026157' => 'dca', 'DCAR_032339' => 'dca', 'DCAR_032340' => 'dca', 'Dinv11200' => 'din', 'Dinv11201' => 'din', 'Dinv20631' => 'din', 'Dinv23182' => 'din', 'Dinv33466' => 'din', 'Dinv33583' => 'din', 'Dinv38565' => 'din', 'Duzib068G0200' => 'dzi', 'Duzib147G0132' => 'dzi', 'Duzib147G0635' => 'dzi', 'Duzib205G1670' => 'dzi', 'Duzib251G0606' => 'dzi', 'ECA232G3336' => 'eca', 'ECA232G3763' => 'eca', 'ECA232G4845' => 'eca', 'ECA234G1607' => 'eca', 'ECA246G0932' => 'eca', 'ECA247G0781' => 'eca', 'ECA247G1932' => 'eca', 'ECA247G2079' => 'eca', 'ECA247G3338' => 'eca', 'ECA247G4115' => 'eca', 'EL10Ac3g06552' => 'bvu', 'EL10Ac5g10721' => 'bvu', 'EL10Ac5g10722' => 'bvu', 'EL10Ac5g10723' => 'bvu', 'EL10Ac5g11361' => 'bvu', 'EL10Ac6g13553' => 'bvu', 'EL10As8g23872' => 'bvu', 'Eucgr.B00250' => 'egr', 'Eucgr.B00251' => 'egr', 'Eucgr.B03533' => 'egr', 'Eucgr.I02381' => 'egr', 'Eucgr.K02700' => 'egr', 'FAN02G0174' => 'fan', 'FAN02G3146' => 'fan', 'FAN04G1672' => 'fan', 'FAN04G2273' => 'fan', 'FAN05G2791' => 'fan', 'FAN05G4035' => 'fan', 'FAN07G0834' => 'fan', 'FAN08G1198' => 'fan', 'FAN09G4182' => 'fan', 'FAN12G0496' => 'fan', 'FAN13G1027' => 'fan', 'FAN13G2951' => 'fan', 'FAN14G0705' => 'fan', 'FAN14G0720' => 'fan', 'FAN17G0201' => 'fan', 'FAN17G2665' => 'fan', 'FAN18G1456' => 'fan', 'FAN18G1525' => 'fan', 'FAN18G3500' => 'fan', 'FAN28G2670' => 'fan', 'FvH4_1g12391' => 'fve', 'FvH4_4g23220' => 'fve', 'FvH4_5g08810' => 'fve', 'FvH4_5g28960' => 'fve', 'FvH4_6g42820' => 'fve', 'FvH4_6g51110' => 'fve', 'Glyma.02G051802' => 'gma', 'Glyma.04G185300' => 'gma', 'Glyma.05G202900' => 'gma', 'Glyma.08G010300' => 'gma', 'Glyma.16G131900' => 'gma', 'Glyma.17G087900' => 'gma', 'Gohir.A07G048600' => 'ghi', 'Gohir.A11G179000' => 'ghi', 'Gohir.A12G140900' => 'ghi', 'Gohir.A12G140950' => 'ghi', 'Gohir.A12G191700' => 'ghi', 'Gohir.A13G086300' => 'ghi', 'Gohir.D07G052900' => 'ghi', 'Gohir.D11G186600' => 'ghi', 'Gohir.D12G145575' => 'ghi', 'Gohir.D12G145650' => 'ghi', 'Gohir.D12G145725' => 'ghi', 'Gohir.D12G194050' => 'ghi', 'Gohir.D13G091800' => 'ghi', 'Gorai.001G055900' => 'gra', 'Gorai.007G198400' => 'gra', 'Gorai.008G157000' => 'gra', 'Gorai.008G157100' => 'gra', 'Gorai.008G208700' => 'gra', 'Gorai.010G138700' => 'gra', 'GSVIVG01000977001' => 'vvi', 'GSVIVG01007708001' => 'vvi', 'GSVIVG01008587001' => 'vvi', 'GSVIVG01018849001' => 'vvi', 'GSVIVG01032432001' => 'vvi', 'HanXRQChr02g0034131' => 'han', 'HanXRQChr02g0035981' => 'han', 'HanXRQChr02g0035991' => 'han', 'HanXRQChr05g0155611' => 'han', 'HanXRQChr05g0155621' => 'han', 'HanXRQChr08g0236501' => 'han', 'HanXRQChr09g0261321' => 'han', 'HanXRQChr09g0272081' => 'han', 'HanXRQChr10g0310741' => 'han', 'HanXRQChr11g0325591' => 'han', 'HanXRQChr12g0385691' => 'han', 'HanXRQChr13g0387801' => 'han', 'HanXRQChr15g0463011' => 'han', 'Haze_03826' => 'cav', 'Haze_03827' => 'cav', 'Haze_07183' => 'cav', 'Haze_07537' => 'cav', 'Haze_07539' => 'cav', 'Haze_12461' => 'cav', 'Haze_16115' => 'cav', 'Haze_16808' => 'cav', 'Haze_18531' => 'cav', 'Hma1.2p1_0046F.1_g026700' => 'hma', 'Hma1.2p1_0046F.1_g026710' => 'hma', 'Hma1.2p1_0168F.1_g074340' => 'hma', 'Hma1.2p1_0266F.1_g107030' => 'hma', 'Hma1.2p1_0266F.1_g107060' => 'hma', 'Hma1.2p1_0275F.1_g110510' => 'hma', 'Hma1.2p1_0592F.1_g185490' => 'hma', 'Hma1.2p1_0592F.1_g185500' => 'hma', 'Hma1.2p1_0592F.1_g185510' => 'hma', 'Hma1.2p1_0592F.1_g185520' => 'hma', 'Hma1.2p1_0592F.1_g185530' => 'hma', 'Hma1.2p1_0818F.1_g223450' => 'hma', 'HPP92_009708' => 'vpl', 'HPP92_009793' => 'vpl', 'HPP92_009796' => 'vpl', 'HPP92_009797' => 'vpl', 'HPP92_014940' => 'vpl', 'HPP92_014988' => 'vpl', 'Hund02463' => 'sun', 'Hund02760' => 'sun', 'Hund05071' => 'sun', 'Hund10108' => 'sun', 'Hund11204' => 'sun', 'Hund14016' => 'sun', 'Hund16464' => 'sun', 'Lalb_Chr09g0333391' => 'lal', 'Lalb_Chr11g0070461' => 'lal', 'Lalb_Chr12g0201671' => 'lal', 'Lalb_Chr13g0297161' => 'lal', 'Lj1g0002823' => 'lja', 'Lj3C1074T6' => 'lonja', 'Lj4A212T28' => 'lonja', 'Lj4g0005516' => 'lja', 'Lj4g0013705' => 'lja', 'Lj4g0027865' => 'lja', 'Lj5C92G16' => 'lonja', 'Lj5C92T12' => 'lonja', 'Lj7C596T3' => 'lonja', 'Lj9A446G59' => 'lonja', 'Lj9A482G21' => 'lonja', 'Lsat_1_v5_gn_1_28261' => 'lsa', 'Lsat_1_v5_gn_1_28281' => 'lsa', 'Lsat_1_v5_gn_1_32721' => 'lsa', 'Lsat_1_v5_gn_4_151760' => 'lsa', 'Lsat_1_v5_gn_4_2120' => 'lsa', 'Lsat_1_v5_gn_4_75761' => 'lsa', 'Lsat_1_v5_gn_5_10920' => 'lsa', 'Manes.02G099900' => 'mes', 'Manes.11G096200' => 'mes', 'Manes.12G007200' => 'mes', 'Manes.14G048300' => 'mes', 'Manes.17G114700' => 'mes', 'Mapoly0002s0070' => 'mpo', 'Mapoly0029s0099' => 'mpo', 'MBI07_g24742_MAGBIO' => 'mbi', 'MBI10_g27988_MAGBIO' => 'mbi', 'MBI11_g13057_MAGBIO' => 'mbi', 'MD02G1137200' => 'mdo', 'MD06G1137200' => 'mdo', 'MD07G1122300' => 'mdo', 'MD09G1078200' => 'mdo', 'MD13G1123700' => 'mdo', 'MD14G1151900' => 'mdo', 'MD17G1030900' => 'mdo', 'MD17G1068200' => 'mdo', 'MD17G1068600' => 'mdo', 'Medtr3g077540' => 'mtr', 'Medtr4g105530' => 'mtr', 'Medtr8g076580' => 'mtr', 'Medtr8g076590' => 'mtr', 'Medtr8g096410' => 'mtr', 'MELO3C016411.2' => 'cme', 'MELO3C017780.2' => 'cme', 'MELO3C022560.2' => 'cme', 'MELO3C026187.2' => 'cme', 'MELO3C026286.2' => 'cme', 'MELO3C032854.2' => 'cme', 'Migut.H02495' => 'egut', 'Migut.I00561' => 'egut', 'Migut.K01015' => 'egut', 'Migut.K01016' => 'egut', 'Migut.L00743' => 'egut', 'Migut.L00744' => 'egut', 'Migut.L00746' => 'egut', 'Migut.L00798' => 'egut', 'Migut.L00799' => 'egut', 'Migut.N02096' => 'egut', 'MSTRG.11259' => 'ama', 'MSTRG.23142' => 'ama', 'MSTRG.2499' => 'ama', 'Nitab4.5_0000003g0730' => 'nta', 'Nitab4.5_0000137g0020' => 'nta', 'Nitab4.5_0000721g0210' => 'nta', 'Nitab4.5_0000723g0050' => 'nta', 'Nitab4.5_0000913g0070' => 'nta', 'Nitab4.5_0001332g0040' => 'nta', 'Nitab4.5_0001771g0050' => 'nta', 'Nitab4.5_0001918g0050' => 'nta', 'Nitab4.5_0002686g0030' => 'nta', 'Nitab4.5_0003156g0020' => 'nta', 'Nitab4.5_0003383g0040' => 'nta', 'Nitab4.5_0003918g0010' => 'nta', 'Nitab4.5_0006760g0010' => 'nta', 'Nn1g05981' => 'nnu', 'Nn1g06288' => 'nnu', 'Nn3g16371' => 'nnu', 'Nn3g16786' => 'nnu', 'Nn4g22232' => 'nnu', 'Oeu005144.1' => 'oeu', 'Oeu005145.1' => 'oeu', 'Oeu011348.1' => 'oeu', 'Oeu016415.1' => 'oeu', 'Oeu023501.1' => 'oeu', 'Oeu044473.1' => 'oeu', 'Oeu048892.2' => 'oeu', 'Os01g0549200' => 'osa', 'Os02g0469300' => 'osa', 'Os04g0311100' => 'osa', 'Os06g0474900' => 'osa', 'Os10g0181700' => 'osa', 'Os11g0454800' => 'osa', 'Peaxi162Scf00037g00714' => 'pax', 'Peaxi162Scf00084g01217' => 'pax', 'Peaxi162Scf00257g00217' => 'pax', 'Peaxi162Scf00516g00215' => 'pax', 'Peaxi162Scf00689g00123' => 'pax', 'PGR044G2719' => 'pgr', 'PGR083G1360' => 'pgr', 'PGR102G2849' => 'pgr', 'PGR119G2534' => 'pgr', 'PGSC0003DMG400003538' => 'stu', 'PGSC0003DMG400028138' => 'stu', 'PGSC0003DMG400031732' => 'stu', 'PGSC0003DMG400038165' => 'stu', 'Phvul.002G284600' => 'pvu', 'Phvul.003G258200' => 'pvu', 'Phvul.009G176500' => 'pvu', 'Potri.003G167201' => 'ptr', 'Potri.005G118400' => 'ptr', 'Potri.012G089000' => 'ptr', 'Potri.012G102800' => 'ptr', 'Potri.015G079400' => 'ptr', 'Potri.015G100900' => 'ptr', 'Pp3c14_9810' => 'ppa', 'Pp3c15_10450' => 'ppa', 'Pp3c20_19150' => 'ppa', 'Pp3c23_12740' => 'ppa', 'Pp3c23_6310' => 'ppa', 'Pp3c24_3720' => 'ppa', 'Pp3c27_2580' => 'ppa', 'Pp3c9_8990' => 'ppa', 'PRCOL_00002854' => 'pco', 'Prupe.1G221200' => 'ppe', 'Prupe.3G289000' => 'ppe', 'Prupe.5G147000' => 'ppe', 'Prupe.6G157300' => 'ppe', 'Prupe.7G163400' => 'ppe', 'Psat0s2177g0040' => 'psa', 'Psat3g174760' => 'psa', 'Psat3g192160' => 'psa', 'Psat4g058520' => 'psa', 'Psat4g096840' => 'psa', 'Psat7g037320' => 'psa', 'PSO017G1274' => 'pso', 'PSO017G5166' => 'pso', 'PSO063G4558' => 'pso', 'PSO170G4458' => 'pso', 'PSO170G5005' => 'pso', 'PSO210G6156' => 'pso', 'PSO210G6635' => 'pso', 'PSO210G7397' => 'pso', 'PSO210G7700' => 'pso', 'PSO455G0035' => 'pso', 'PSO455G0180' => 'pso', 'PSO478G4515' => 'pso', 'PSO832G1305' => 'pso', 'PSO832G3489' => 'pso', 'QL02p075247' => 'qlo', 'QL03p051148' => 'qlo', 'QL05p010313' => 'qlo', 'QL06p034627' => 'qlo', 'QL10p001889' => 'qlo', 'QL10p010846' => 'qlo', 'RcHm_v2.0_Chr1g0350621' => 'rch', 'RcHm_v2.0_Chr1g0350641' => 'rch', 'RcHm_v2.0_Chr2g0092891' => 'rch', 'RcHm_v2.0_Chr2g0100251' => 'rch', 'RcHm_v2.0_Chr2g0158661' => 'rch', 'RcHm_v2.0_Chr2g0172741' => 'rch', 'RcHm_v2.0_Chr4g0429571' => 'rch', 'RcHm_v2.0_Chr5g0042471' => 'rch', 'RcHm_v2.0_Chr7g0189451' => 'rch', 'Rhsim08G0052000' => 'rsi', 'Rhsim08G0174400' => 'rsi', 'Rhsim08G0193200' => 'rsi', 'Rhsim10G0214800' => 'rsi', 'Rhsim10G0214900' => 'rsi', 'Rhsim10G0215000' => 'rsi', 'Rhsim12G0022900' => 'rsi', 'Rhsim12G0177500' => 'rsi', 'Rhsim12G0177700' => 'rsi', 'Sabra03G0122600' => 'sbr', 'Sabra05G0097400' => 'sbr', 'Sabra12G0064100' => 'sbr', 'Sabra15G0121300' => 'sbr', 'SalBow2G0642' => 'sbo', 'SalBow5G2667' => 'sbo', 'SalBow5G4873' => 'sbo', 'SalBow8G2395' => 'sbo', 'Sc03g0003290' => 'sci', 'Sc10g0010130' => 'sci', 'Sc22g0003650' => 'sci', 'Sed0001603' => 'sed', 'Sed0004259' => 'sed', 'Sed0006789' => 'sed', 'Sed0011838' => 'sed', 'Sed0012964' => 'sed', 'Sed0016383' => 'sed', 'Sed0019010' => 'sed', 'Sed0020188' => 'sed', 'SEGI_04702' => 'sgi', 'SEGI_17231' => 'sgi', 'SEGI_18877' => 'sgi', 'SEGI_25196' => 'sgi', 'SEGI_25515' => 'sgi', 'SEGI_28445' => 'sgi', 'SEGI_37452' => 'sgi', 'SGA_v2.0_scaffold188G40336' => 'sas', 'SGA_v2.0_scaffold228G43247' => 'sas', 'SGA_v2.0_scaffold280G46853' => 'sas', 'SGA_v2.0_scaffold34G13808' => 'sas', 'SGA_v2.0_scaffold40G15576' => 'sas', 'SGA_v2.0_scaffold611G53188' => 'sas', 'SGA_v2.0_scaffold78G25461' => 'sas', 'SGA_v2.0_scaffold90G27888' => 'sas', 'SHI08601' => 'shi', 'SHI08606' => 'shi', 'SHI17117' => 'shi', 'SHI17119' => 'shi', 'SMO118G0201' => 'smo', 'SMO169G0247' => 'smo', 'SMO176G0006' => 'smo', 'SMO176G0015' => 'smo', 'SMO202G0006' => 'smo', 'SMO240G0050' => 'smo', 'SMO286G0009' => 'smo', 'SMO338G0033' => 'smo', 'SMO356G0533' => 'smo', 'SMO364G0382' => 'smo', 'SMO367G0166' => 'smo', 'SMO367G1098' => 'smo', 'Solyc01g009920.3' => 'sly', 'Solyc01g099300.3' => 'sly', 'Solyc02g084700.3' => 'sly', 'Solyc03g097520.3' => 'sly', 'Solyc06g071580.3' => 'sly', 'Solyc10g081760.3' => 'sly', 'Sopen01g005480' => 'spe', 'Sopen01g042850' => 'spe', 'Sopen02g029370' => 'spe', 'Sopen03g028280' => 'spe', 'Sopen06g027870' => 'spe', 'Sopen10g032270' => 'spe', 'Sp5g18180' => 'spa', 'Sp6g12880' => 'spa', 'Sp6g30850' => 'spa', 'Sp7g22960' => 'spa', 'Sp7g34010' => 'spa', 'SpUn1326_0010' => 'spa', 'TAR371G0242' => 'tar', 'TAR622G0638' => 'tar', 'TAR628G1548' => 'tar', 'TAR629G1079' => 'tar', 'TAR629G3413' => 'tar', 'THA.LOC104804249' => 'tha', 'THA.LOC104808315' => 'tha', 'THA.LOC104809238' => 'tha', 'THA.LOC104825484' => 'tha', 'Thecc.01G025500' => 'tca', 'Thecc.03G015800' => 'tca', 'Thecc.03G018000' => 'tca', 'Thecc.03G134800' => 'tca', 'Thecc.04G014700' => 'tca', 'Thhalv10006991m.g' => 'esa', 'Thhalv10012707m.g' => 'esa', 'Thhalv10015739m.g' => 'esa', 'Thhalv10024553m.g' => 'esa', 'Thhalv10024673m.g' => 'esa', 'Thhalv10029187m.g' => 'esa', 'TPR.G12971' => 'tpr', 'TPR.G29396' => 'tpr', 'TPR.G33376' => 'tpr', 'TPR.G35508' => 'tpr', 'TPR.G35516' => 'tpr', 'TPR.G37317' => 'tpr', 'TPR.G37389' => 'tpr', 'TPR.G37523' => 'tpr', 'TPR.G559' => 'tpr', 'TWI14G0070' => 'twi', 'TWI14G0729' => 'twi', 'TWI18G0596' => 'twi', 'TWI39G0780' => 'twi', 'TWI39G0850' => 'twi', 'TWI73G1052' => 'twi', 'unitig_52.g17485' => 'ugi', 'unitig_61.g26355' => 'ugi', 'vmacro01040' => 'vma', 'vmacro16731' => 'vma', 'vmacro18270' => 'vma', 'vmacro19142' => 'vma', 'vmacro19407' => 'vma', 'vmacro19408' => 'vma', 'vmacro21899' => 'vma', 'vmacro21900' => 'vma', 'vmacro21901' => 'vma', 'VMungo0251G0490' => 'vmu', 'VMungo0251G1748' => 'vmu', 'VMungo1309G0421' => 'vmu', 'Zm00001eb086500' => 'zma', 'Zm00001eb150680' => 'zma', 'Zm00001eb162330' => 'zma', 'Zm00001eb203130' => 'zma', 'Zm00001eb369480' => 'zma', 'Zm00001eb382340' => 'zma', 'Zm00001eb416360' => 'zma' ) $gf_id = 'HOM05D000902' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000902' ) $data_identifier = 'HOM05D000902' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 13, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 10, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 6, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 9, 'hma' => (int) 12, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 4, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 6, 'ppa' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 6, 'rch' => (int) 9, 'rsi' => (int) 9, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 12, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 3, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416360' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000902', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '663', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02470' => 'bna', 'A01p16260' => 'bna', 'A02p01680' => 'bna', 'A03p16600' => 'bna', 'A03p55660' => 'bna', 'A03p64160' => 'bna', 'A03p64170' => 'bna', 'A08p31900' => 'bna', 'A09p59530' => 'bna', 'A10p08230' => 'bna', 'A10p25090' => 'bna', 'Aa31LG3G7100' => 'aar', 'Aa31LG3G7110' => 'aar', 'Aa31LG6G13160' => 'aar', 'Aa31LG7G10770' => 'aar', 'Aa31LG7G3830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2723' => 'aag', 'Actinidia08045' => 'ach', 'Actinidia08888' => 'ach', 'Actinidia18333' => 'ach', 'Actinidia19334' => 'ach', 'Actinidia25552' => 'ach', 'Actinidia26089' => 'ach', 'Actinidia30615' => 'ach', 'Actinidia30616' => 'ach', 'Actinidia33083' => 'ach', 'Actinidia35762' => 'ach', 'Ah.02g110620' => 'amhyb', 'Ah.11g046390' => 'amhyb', 'AL1G31670' => 'aly', 'AL6G23730' => 'aly', 'AL7G14740' => 'aly', 'AL7G14750' => 'aly', 'AL7G14760' => 'aly', 'AL7G28220' => 'aly', 'AL8G24940' => 'aly', 'Aqoxy3G01665' => 'aox', 'Aqoxy3G02853' => 'aox', 'Aqoxy5G01513' => 'aox', 'Aqoxy5G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8SKA4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ75LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKDA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0LJZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7REX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZP4YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWX7I5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2QKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS0L9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPCD8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q161UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC7XCF' => 'arhy', 'AT1G19100' => 'ath', 'AT4G24970' => 'ath', 'AT4G36270' => 'ath', 'AT4G36280' => 'ath', 'AT4G36290' => 'ath', 'AT5G13130' => 'ath', 'AT5G50780' => 'ath', 'ATR0582G266' => 'atr', 'ATR0661G195' => 'atr', 'ATR1152G031' => 'atr', 'Atru.chr11.2382' => 'acertr', 'Atru.chr12.2337' => 'acertr', 'Atru.chr3.744' => 'acertr', 'Atru.chr6.1870' => 'acertr', 'Atru.chr9.2515' => 'acertr', 'AUR62004120' => 'cqu', 'AUR62005667' => 'cqu', 'AUR62007634' => 'cqu', 'AUR62008186' => 'cqu', 'AUR62008187' => 'cqu', 'AUR62008188' => 'cqu', 'AUR62027954' => 'cqu', 'AUR62028766' => 'cqu', 'AUR62028767' => 'cqu', 'AUR62028768' => 'cqu', 'AUR62028886' => 'cqu', 'AUR62029563' => 'cqu', 'AUR62038832' => 'cqu', 'BcaB01g04149' => 'bca', 'BcaB03g12940' => 'bca', 'BcaB03g13090' => 'bca', 'BcaB03g14466' => 'bca', 'BcaB05g24035' => 'bca', 'BcaC01g06050' => 'bca', 'BcaC04g19148' => 'bca', 'BcaC04g20761' => 'bca', 'BcaC06g32845' => 'bca', 'BcaC07g41274' => 'bca', 'BcaC09g50827' => 'bca', 'BcaNung00741' => 'bca', 'BcaNung00742' => 'bca', 'BcaNung01859' => 'bca', 'BcaNung03985' => 'bca', 'BcaNung03989' => 'bca', 'BcaNung05661' => 'bca', 'BolC1t00257H' => 'bol', 'BolC1t01956H' => 'bol', 'BolC2t06534H' => 'bol', 'BolC3t14334H' => 'bol', 'BolC5t30451H' => 'bol', 'BolC7t45880H' => 'bol', 'BolC7t46586H' => 'bol', 'BolC8t49301H' => 'bol', 'BolC8t51837H' => 'bol', 'BolC9t56822H' => 'bol', 'BolC9t59235H' => 'bol', 'BraA01t00234Z' => 'bra', 'BraA01t01563Z' => 'bra', 'BraA02t05147Z' => 'bra', 'BraA03t10947Z' => 'bra', 'BraA03t14633Z' => 'bra', 'BraA08t35112Z' => 'bra', 'BraA09t41330Z' => 'bra', 'BraA10t44570Z' => 'bra', 'C01p02670' => 'bna', 'C01p20260' => 'bna', 'C02p05890' => 'bna', 'C03p19530' => 'bna', 'C05p17470' => 'bna', 'C07p53900' => 'bna', 'C07p61630' => 'bna', 'C08p16800' => 'bna', 'C08p42810' => 'bna', 'C09p39480' => 'bna', 'C09p63980' => 'bna', 'CAN.G1001.7' => 'can', 'CAN.G1034.55' => 'can', 'CAN.G143.7' => 'can', 'CAN.G3340.1' => 'can', 'CAN.G358.19' => 'can', 'CAN.G373.2' => 'can', 'CAN.G674.16' => 'can', 'CAN.G674.17' => 'can', 'CAN.G674.18' => 'can', 'CAN.G732.2' => 'can', 'CAN.G732.3' => 'can', 'CAN.G993.39' => 'can', 'CANSAT01G2052' => 'cansat', 'CANSAT80G0070' => 'cansat', 'CANSAT80G0483' => 'cansat', 'CANSAT80G0625' => 'cansat', 'CARHR019690' => 'chi', 'CARHR080280' => 'chi', 'CARHR152750' => 'chi', 'CARHR152760' => 'chi', 'CARHR152770' => 'chi', 'CARHR200340' => 'chi', 'CARHR232370' => 'chi', 'CARHR244670' => 'chi', 'CARHR244680' => 'chi', 'CARHR257520' => 'chi', 'Carub.0001s1872' => 'cru', 'Carub.0006s1130' => 'cru', 'Carub.0007s0396' => 'cru', 'Carub.0007s0397' => 'cru', 'Carub.0007s1608' => 'cru', 'Carub.0008s1068' => 'cru', 'Carub.0008s1077' => 'cru', 'Ca_16158_v3' => 'car', 'Ca_17571_v3' => 'car', 'Ca_21936_v3' => 'car', 'Ca_22350_v3' => 'car', 'CBR_g22445' => 'cbr', 'CBR_g26290' => 'cbr', 'Cc04_g09610' => 'ccan', 'Cc04_g12280' => 'ccan', 'Cc07_g10230' => 'ccan', 'CDE02G0093' => 'cde', 'CDE02G0701' => 'cde', 'CDE04G1050' => 'cde', 'CDE05G1833' => 'cde', 'CDE05G3058' => 'cde', 'CDE05G3380' => 'cde', 'CDE06G0536' => 'cde', 'Cfa006923' => 'cfa', 'Cfa009402' => 'cfa', 'Cfa018751' => 'cfa', 'Cfa019164' => 'cfa', 'Cfa022935' => 'cfa', 'Ciclev10019081m.g' => 'ccl', 'Ciclev10025076m.g' => 'ccl', 'Ciclev10030712m.g' => 'ccl', 'Ciclev10033760m.g' => 'ccl', 'CiPaw.05G105600' => 'cil', 'CiPaw.08G136700' => 'cil', 'CiPaw.11G003900' => 'cil', 'CiPaw.11G023700' => 'cil', 'CiPaw.12G003700' => 'cil', 'ClCG06G017100' => 'cla', 'ClCG06G018110' => 'cla', 'ClCG07G008800' => 'cla', 'ClCG07G015330' => 'cla', 'COL.COLO4_13698' => 'col', 'COL.COLO4_16659' => 'col', 'COL.COLO4_21986' => 'col', 'COL.COLO4_24049' => 'col', 'COL.COLO4_29061' => 'col', 'COL.COLO4_29075' => 'col', 'COL.COLO4_30094' => 'col', 'Cpa.g.c33689' => 'cpa', 'Cpa.g.sc108.39' => 'cpa', 'Cpa.g.sc108.41' => 'cpa', 'Cpa.g.sc1163.1' => 'cpa', 'Cpa.g.sc4.155' => 'cpa', 'Cpa.g.sc6.194' => 'cpa', 'CsaV3_1G000340' => 'csa', 'CsaV3_1G001400' => 'csa', 'CsaV3_4G002220' => 'csa', 'CsaV3_4G005370' => 'csa', 'CSS0007487' => 'camsi', 'CSS0008066' => 'camsi', 'CSS0009120' => 'camsi', 'CSS0015512' => 'camsi', 'CSS0022409' => 'camsi', 'CSS0025358' => 'camsi', 'CSS0044547' => 'camsi', 'DCAR_013057' => 'dca', 'DCAR_015058' => 'dca', 'DCAR_016027' => 'dca', 'DCAR_017327' => 'dca', 'DCAR_020743' => 'dca', 'DCAR_026157' => 'dca', 'DCAR_032339' => 'dca', 'DCAR_032340' => 'dca', 'Dinv11200' => 'din', 'Dinv11201' => 'din', 'Dinv20631' => 'din', 'Dinv23182' => 'din', 'Dinv33466' => 'din', 'Dinv33583' => 'din', 'Dinv38565' => 'din', 'Duzib068G0200' => 'dzi', 'Duzib147G0132' => 'dzi', 'Duzib147G0635' => 'dzi', 'Duzib205G1670' => 'dzi', 'Duzib251G0606' => 'dzi', 'ECA232G3336' => 'eca', 'ECA232G3763' => 'eca', 'ECA232G4845' => 'eca', 'ECA234G1607' => 'eca', 'ECA246G0932' => 'eca', 'ECA247G0781' => 'eca', 'ECA247G1932' => 'eca', 'ECA247G2079' => 'eca', 'ECA247G3338' => 'eca', 'ECA247G4115' => 'eca', 'EL10Ac3g06552' => 'bvu', 'EL10Ac5g10721' => 'bvu', 'EL10Ac5g10722' => 'bvu', 'EL10Ac5g10723' => 'bvu', 'EL10Ac5g11361' => 'bvu', 'EL10Ac6g13553' => 'bvu', 'EL10As8g23872' => 'bvu', 'Eucgr.B00250' => 'egr', 'Eucgr.B00251' => 'egr', 'Eucgr.B03533' => 'egr', 'Eucgr.I02381' => 'egr', 'Eucgr.K02700' => 'egr', 'FAN02G0174' => 'fan', 'FAN02G3146' => 'fan', 'FAN04G1672' => 'fan', 'FAN04G2273' => 'fan', 'FAN05G2791' => 'fan', 'FAN05G4035' => 'fan', 'FAN07G0834' => 'fan', 'FAN08G1198' => 'fan', 'FAN09G4182' => 'fan', 'FAN12G0496' => 'fan', 'FAN13G1027' => 'fan', 'FAN13G2951' => 'fan', 'FAN14G0705' => 'fan', 'FAN14G0720' => 'fan', 'FAN17G0201' => 'fan', 'FAN17G2665' => 'fan', 'FAN18G1456' => 'fan', 'FAN18G1525' => 'fan', 'FAN18G3500' => 'fan', 'FAN28G2670' => 'fan', 'FvH4_1g12391' => 'fve', 'FvH4_4g23220' => 'fve', 'FvH4_5g08810' => 'fve', 'FvH4_5g28960' => 'fve', 'FvH4_6g42820' => 'fve', 'FvH4_6g51110' => 'fve', 'Glyma.02G051802' => 'gma', 'Glyma.04G185300' => 'gma', 'Glyma.05G202900' => 'gma', 'Glyma.08G010300' => 'gma', 'Glyma.16G131900' => 'gma', 'Glyma.17G087900' => 'gma', 'Gohir.A07G048600' => 'ghi', 'Gohir.A11G179000' => 'ghi', 'Gohir.A12G140900' => 'ghi', 'Gohir.A12G140950' => 'ghi', 'Gohir.A12G191700' => 'ghi', 'Gohir.A13G086300' => 'ghi', 'Gohir.D07G052900' => 'ghi', 'Gohir.D11G186600' => 'ghi', 'Gohir.D12G145575' => 'ghi', 'Gohir.D12G145650' => 'ghi', 'Gohir.D12G145725' => 'ghi', 'Gohir.D12G194050' => 'ghi', 'Gohir.D13G091800' => 'ghi', 'Gorai.001G055900' => 'gra', 'Gorai.007G198400' => 'gra', 'Gorai.008G157000' => 'gra', 'Gorai.008G157100' => 'gra', 'Gorai.008G208700' => 'gra', 'Gorai.010G138700' => 'gra', 'GSVIVG01000977001' => 'vvi', 'GSVIVG01007708001' => 'vvi', 'GSVIVG01008587001' => 'vvi', 'GSVIVG01018849001' => 'vvi', 'GSVIVG01032432001' => 'vvi', 'HanXRQChr02g0034131' => 'han', 'HanXRQChr02g0035981' => 'han', 'HanXRQChr02g0035991' => 'han', 'HanXRQChr05g0155611' => 'han', 'HanXRQChr05g0155621' => 'han', 'HanXRQChr08g0236501' => 'han', 'HanXRQChr09g0261321' => 'han', 'HanXRQChr09g0272081' => 'han', 'HanXRQChr10g0310741' => 'han', 'HanXRQChr11g0325591' => 'han', 'HanXRQChr12g0385691' => 'han', 'HanXRQChr13g0387801' => 'han', 'HanXRQChr15g0463011' => 'han', 'Haze_03826' => 'cav', 'Haze_03827' => 'cav', 'Haze_07183' => 'cav', 'Haze_07537' => 'cav', 'Haze_07539' => 'cav', 'Haze_12461' => 'cav', 'Haze_16115' => 'cav', 'Haze_16808' => 'cav', 'Haze_18531' => 'cav', 'Hma1.2p1_0046F.1_g026700' => 'hma', 'Hma1.2p1_0046F.1_g026710' => 'hma', 'Hma1.2p1_0168F.1_g074340' => 'hma', 'Hma1.2p1_0266F.1_g107030' => 'hma', 'Hma1.2p1_0266F.1_g107060' => 'hma', 'Hma1.2p1_0275F.1_g110510' => 'hma', 'Hma1.2p1_0592F.1_g185490' => 'hma', 'Hma1.2p1_0592F.1_g185500' => 'hma', 'Hma1.2p1_0592F.1_g185510' => 'hma', 'Hma1.2p1_0592F.1_g185520' => 'hma', 'Hma1.2p1_0592F.1_g185530' => 'hma', 'Hma1.2p1_0818F.1_g223450' => 'hma', 'HPP92_009708' => 'vpl', 'HPP92_009793' => 'vpl', 'HPP92_009796' => 'vpl', 'HPP92_009797' => 'vpl', 'HPP92_014940' => 'vpl', 'HPP92_014988' => 'vpl', 'Hund02463' => 'sun', 'Hund02760' => 'sun', 'Hund05071' => 'sun', 'Hund10108' => 'sun', 'Hund11204' => 'sun', 'Hund14016' => 'sun', 'Hund16464' => 'sun', 'Lalb_Chr09g0333391' => 'lal', 'Lalb_Chr11g0070461' => 'lal', 'Lalb_Chr12g0201671' => 'lal', 'Lalb_Chr13g0297161' => 'lal', 'Lj1g0002823' => 'lja', 'Lj3C1074T6' => 'lonja', 'Lj4A212T28' => 'lonja', 'Lj4g0005516' => 'lja', 'Lj4g0013705' => 'lja', 'Lj4g0027865' => 'lja', 'Lj5C92G16' => 'lonja', 'Lj5C92T12' => 'lonja', 'Lj7C596T3' => 'lonja', 'Lj9A446G59' => 'lonja', 'Lj9A482G21' => 'lonja', 'Lsat_1_v5_gn_1_28261' => 'lsa', 'Lsat_1_v5_gn_1_28281' => 'lsa', 'Lsat_1_v5_gn_1_32721' => 'lsa', 'Lsat_1_v5_gn_4_151760' => 'lsa', 'Lsat_1_v5_gn_4_2120' => 'lsa', 'Lsat_1_v5_gn_4_75761' => 'lsa', 'Lsat_1_v5_gn_5_10920' => 'lsa', 'Manes.02G099900' => 'mes', 'Manes.11G096200' => 'mes', 'Manes.12G007200' => 'mes', 'Manes.14G048300' => 'mes', 'Manes.17G114700' => 'mes', 'Mapoly0002s0070' => 'mpo', 'Mapoly0029s0099' => 'mpo', 'MBI07_g24742_MAGBIO' => 'mbi', 'MBI10_g27988_MAGBIO' => 'mbi', 'MBI11_g13057_MAGBIO' => 'mbi', 'MD02G1137200' => 'mdo', 'MD06G1137200' => 'mdo', 'MD07G1122300' => 'mdo', 'MD09G1078200' => 'mdo', 'MD13G1123700' => 'mdo', 'MD14G1151900' => 'mdo', 'MD17G1030900' => 'mdo', 'MD17G1068200' => 'mdo', 'MD17G1068600' => 'mdo', 'Medtr3g077540' => 'mtr', 'Medtr4g105530' => 'mtr', 'Medtr8g076580' => 'mtr', 'Medtr8g076590' => 'mtr', 'Medtr8g096410' => 'mtr', 'MELO3C016411.2' => 'cme', 'MELO3C017780.2' => 'cme', 'MELO3C022560.2' => 'cme', 'MELO3C026187.2' => 'cme', 'MELO3C026286.2' => 'cme', 'MELO3C032854.2' => 'cme', 'Migut.H02495' => 'egut', 'Migut.I00561' => 'egut', 'Migut.K01015' => 'egut', 'Migut.K01016' => 'egut', 'Migut.L00743' => 'egut', 'Migut.L00744' => 'egut', 'Migut.L00746' => 'egut', 'Migut.L00798' => 'egut', 'Migut.L00799' => 'egut', 'Migut.N02096' => 'egut', 'MSTRG.11259' => 'ama', 'MSTRG.23142' => 'ama', 'MSTRG.2499' => 'ama', 'Nitab4.5_0000003g0730' => 'nta', 'Nitab4.5_0000137g0020' => 'nta', 'Nitab4.5_0000721g0210' => 'nta', 'Nitab4.5_0000723g0050' => 'nta', 'Nitab4.5_0000913g0070' => 'nta', 'Nitab4.5_0001332g0040' => 'nta', 'Nitab4.5_0001771g0050' => 'nta', 'Nitab4.5_0001918g0050' => 'nta', 'Nitab4.5_0002686g0030' => 'nta', 'Nitab4.5_0003156g0020' => 'nta', 'Nitab4.5_0003383g0040' => 'nta', 'Nitab4.5_0003918g0010' => 'nta', 'Nitab4.5_0006760g0010' => 'nta', 'Nn1g05981' => 'nnu', 'Nn1g06288' => 'nnu', 'Nn3g16371' => 'nnu', 'Nn3g16786' => 'nnu', 'Nn4g22232' => 'nnu', 'Oeu005144.1' => 'oeu', 'Oeu005145.1' => 'oeu', 'Oeu011348.1' => 'oeu', 'Oeu016415.1' => 'oeu', 'Oeu023501.1' => 'oeu', 'Oeu044473.1' => 'oeu', 'Oeu048892.2' => 'oeu', 'Os01g0549200' => 'osa', 'Os02g0469300' => 'osa', 'Os04g0311100' => 'osa', 'Os06g0474900' => 'osa', 'Os10g0181700' => 'osa', 'Os11g0454800' => 'osa', 'Peaxi162Scf00037g00714' => 'pax', 'Peaxi162Scf00084g01217' => 'pax', 'Peaxi162Scf00257g00217' => 'pax', 'Peaxi162Scf00516g00215' => 'pax', 'Peaxi162Scf00689g00123' => 'pax', 'PGR044G2719' => 'pgr', 'PGR083G1360' => 'pgr', 'PGR102G2849' => 'pgr', 'PGR119G2534' => 'pgr', 'PGSC0003DMG400003538' => 'stu', 'PGSC0003DMG400028138' => 'stu', 'PGSC0003DMG400031732' => 'stu', 'PGSC0003DMG400038165' => 'stu', 'Phvul.002G284600' => 'pvu', 'Phvul.003G258200' => 'pvu', 'Phvul.009G176500' => 'pvu', 'Potri.003G167201' => 'ptr', 'Potri.005G118400' => 'ptr', 'Potri.012G089000' => 'ptr', 'Potri.012G102800' => 'ptr', 'Potri.015G079400' => 'ptr', 'Potri.015G100900' => 'ptr', 'Pp3c14_9810' => 'ppa', 'Pp3c15_10450' => 'ppa', 'Pp3c20_19150' => 'ppa', 'Pp3c23_12740' => 'ppa', 'Pp3c23_6310' => 'ppa', 'Pp3c24_3720' => 'ppa', 'Pp3c27_2580' => 'ppa', 'Pp3c9_8990' => 'ppa', 'PRCOL_00002854' => 'pco', 'Prupe.1G221200' => 'ppe', 'Prupe.3G289000' => 'ppe', 'Prupe.5G147000' => 'ppe', 'Prupe.6G157300' => 'ppe', 'Prupe.7G163400' => 'ppe', 'Psat0s2177g0040' => 'psa', 'Psat3g174760' => 'psa', 'Psat3g192160' => 'psa', 'Psat4g058520' => 'psa', 'Psat4g096840' => 'psa', 'Psat7g037320' => 'psa', 'PSO017G1274' => 'pso', 'PSO017G5166' => 'pso', 'PSO063G4558' => 'pso', 'PSO170G4458' => 'pso', 'PSO170G5005' => 'pso', 'PSO210G6156' => 'pso', 'PSO210G6635' => 'pso', 'PSO210G7397' => 'pso', 'PSO210G7700' => 'pso', 'PSO455G0035' => 'pso', 'PSO455G0180' => 'pso', 'PSO478G4515' => 'pso', 'PSO832G1305' => 'pso', 'PSO832G3489' => 'pso', 'QL02p075247' => 'qlo', 'QL03p051148' => 'qlo', 'QL05p010313' => 'qlo', 'QL06p034627' => 'qlo', 'QL10p001889' => 'qlo', 'QL10p010846' => 'qlo', 'RcHm_v2.0_Chr1g0350621' => 'rch', 'RcHm_v2.0_Chr1g0350641' => 'rch', 'RcHm_v2.0_Chr2g0092891' => 'rch', 'RcHm_v2.0_Chr2g0100251' => 'rch', 'RcHm_v2.0_Chr2g0158661' => 'rch', 'RcHm_v2.0_Chr2g0172741' => 'rch', 'RcHm_v2.0_Chr4g0429571' => 'rch', 'RcHm_v2.0_Chr5g0042471' => 'rch', 'RcHm_v2.0_Chr7g0189451' => 'rch', 'Rhsim08G0052000' => 'rsi', 'Rhsim08G0174400' => 'rsi', 'Rhsim08G0193200' => 'rsi', 'Rhsim10G0214800' => 'rsi', 'Rhsim10G0214900' => 'rsi', 'Rhsim10G0215000' => 'rsi', 'Rhsim12G0022900' => 'rsi', 'Rhsim12G0177500' => 'rsi', 'Rhsim12G0177700' => 'rsi', 'Sabra03G0122600' => 'sbr', 'Sabra05G0097400' => 'sbr', 'Sabra12G0064100' => 'sbr', 'Sabra15G0121300' => 'sbr', 'SalBow2G0642' => 'sbo', 'SalBow5G2667' => 'sbo', 'SalBow5G4873' => 'sbo', 'SalBow8G2395' => 'sbo', 'Sc03g0003290' => 'sci', 'Sc10g0010130' => 'sci', 'Sc22g0003650' => 'sci', 'Sed0001603' => 'sed', 'Sed0004259' => 'sed', 'Sed0006789' => 'sed', 'Sed0011838' => 'sed', 'Sed0012964' => 'sed', 'Sed0016383' => 'sed', 'Sed0019010' => 'sed', 'Sed0020188' => 'sed', 'SEGI_04702' => 'sgi', 'SEGI_17231' => 'sgi', 'SEGI_18877' => 'sgi', 'SEGI_25196' => 'sgi', 'SEGI_25515' => 'sgi', 'SEGI_28445' => 'sgi', 'SEGI_37452' => 'sgi', 'SGA_v2.0_scaffold188G40336' => 'sas', 'SGA_v2.0_scaffold228G43247' => 'sas', 'SGA_v2.0_scaffold280G46853' => 'sas', 'SGA_v2.0_scaffold34G13808' => 'sas', 'SGA_v2.0_scaffold40G15576' => 'sas', 'SGA_v2.0_scaffold611G53188' => 'sas', 'SGA_v2.0_scaffold78G25461' => 'sas', 'SGA_v2.0_scaffold90G27888' => 'sas', 'SHI08601' => 'shi', 'SHI08606' => 'shi', 'SHI17117' => 'shi', 'SHI17119' => 'shi', 'SMO118G0201' => 'smo', 'SMO169G0247' => 'smo', 'SMO176G0006' => 'smo', 'SMO176G0015' => 'smo', 'SMO202G0006' => 'smo', 'SMO240G0050' => 'smo', 'SMO286G0009' => 'smo', 'SMO338G0033' => 'smo', 'SMO356G0533' => 'smo', 'SMO364G0382' => 'smo', 'SMO367G0166' => 'smo', 'SMO367G1098' => 'smo', 'Solyc01g009920.3' => 'sly', 'Solyc01g099300.3' => 'sly', 'Solyc02g084700.3' => 'sly', 'Solyc03g097520.3' => 'sly', 'Solyc06g071580.3' => 'sly', 'Solyc10g081760.3' => 'sly', 'Sopen01g005480' => 'spe', 'Sopen01g042850' => 'spe', 'Sopen02g029370' => 'spe', 'Sopen03g028280' => 'spe', 'Sopen06g027870' => 'spe', 'Sopen10g032270' => 'spe', 'Sp5g18180' => 'spa', 'Sp6g12880' => 'spa', 'Sp6g30850' => 'spa', 'Sp7g22960' => 'spa', 'Sp7g34010' => 'spa', 'SpUn1326_0010' => 'spa', 'TAR371G0242' => 'tar', 'TAR622G0638' => 'tar', 'TAR628G1548' => 'tar', 'TAR629G1079' => 'tar', 'TAR629G3413' => 'tar', 'THA.LOC104804249' => 'tha', 'THA.LOC104808315' => 'tha', 'THA.LOC104809238' => 'tha', 'THA.LOC104825484' => 'tha', 'Thecc.01G025500' => 'tca', 'Thecc.03G015800' => 'tca', 'Thecc.03G018000' => 'tca', 'Thecc.03G134800' => 'tca', 'Thecc.04G014700' => 'tca', 'Thhalv10006991m.g' => 'esa', 'Thhalv10012707m.g' => 'esa', 'Thhalv10015739m.g' => 'esa', 'Thhalv10024553m.g' => 'esa', 'Thhalv10024673m.g' => 'esa', 'Thhalv10029187m.g' => 'esa', 'TPR.G12971' => 'tpr', 'TPR.G29396' => 'tpr', 'TPR.G33376' => 'tpr', 'TPR.G35508' => 'tpr', 'TPR.G35516' => 'tpr', 'TPR.G37317' => 'tpr', 'TPR.G37389' => 'tpr', 'TPR.G37523' => 'tpr', 'TPR.G559' => 'tpr', 'TWI14G0070' => 'twi', 'TWI14G0729' => 'twi', 'TWI18G0596' => 'twi', 'TWI39G0780' => 'twi', 'TWI39G0850' => 'twi', 'TWI73G1052' => 'twi', 'unitig_52.g17485' => 'ugi', 'unitig_61.g26355' => 'ugi', 'vmacro01040' => 'vma', 'vmacro16731' => 'vma', 'vmacro18270' => 'vma', 'vmacro19142' => 'vma', 'vmacro19407' => 'vma', 'vmacro19408' => 'vma', 'vmacro21899' => 'vma', 'vmacro21900' => 'vma', 'vmacro21901' => 'vma', 'VMungo0251G0490' => 'vmu', 'VMungo0251G1748' => 'vmu', 'VMungo1309G0421' => 'vmu', 'Zm00001eb086500' => 'zma', 'Zm00001eb150680' => 'zma', 'Zm00001eb162330' => 'zma', 'Zm00001eb203130' => 'zma', 'Zm00001eb369480' => 'zma', 'Zm00001eb382340' => 'zma', 'Zm00001eb416360' => 'zma' ), 'gf_id' => 'HOM05D000902', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000902' ), 'data_identifier' => 'HOM05D000902', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000902', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '663', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02470' => 'bna', 'A01p16260' => 'bna', 'A02p01680' => 'bna', 'A03p16600' => 'bna', 'A03p55660' => 'bna', 'A03p64160' => 'bna', 'A03p64170' => 'bna', 'A08p31900' => 'bna', 'A09p59530' => 'bna', 'A10p08230' => 'bna', 'A10p25090' => 'bna', 'Aa31LG3G7100' => 'aar', 'Aa31LG3G7110' => 'aar', 'Aa31LG6G13160' => 'aar', 'Aa31LG7G10770' => 'aar', 'Aa31LG7G3830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2723' => 'aag', 'Actinidia08045' => 'ach', 'Actinidia08888' => 'ach', 'Actinidia18333' => 'ach', 'Actinidia19334' => 'ach', 'Actinidia25552' => 'ach', 'Actinidia26089' => 'ach', 'Actinidia30615' => 'ach', 'Actinidia30616' => 'ach', 'Actinidia33083' => 'ach', 'Actinidia35762' => 'ach', 'Ah.02g110620' => 'amhyb', 'Ah.11g046390' => 'amhyb', 'AL1G31670' => 'aly', 'AL6G23730' => 'aly', 'AL7G14740' => 'aly', 'AL7G14750' => 'aly', 'AL7G14760' => 'aly', 'AL7G28220' => 'aly', 'AL8G24940' => 'aly', 'Aqoxy3G01665' => 'aox', 'Aqoxy3G02853' => 'aox', 'Aqoxy5G01513' => 'aox', 'Aqoxy5G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8SKA4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ75LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKDA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0LJZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7REX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZP4YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWX7I5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2QKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS0L9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPCD8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q161UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC7XCF' => 'arhy', 'AT1G19100' => 'ath', 'AT4G24970' => 'ath', 'AT4G36270' => 'ath', 'AT4G36280' => 'ath', 'AT4G36290' => 'ath', 'AT5G13130' => 'ath', 'AT5G50780' => 'ath', 'ATR0582G266' => 'atr', 'ATR0661G195' => 'atr', 'ATR1152G031' => 'atr', 'Atru.chr11.2382' => 'acertr', 'Atru.chr12.2337' => 'acertr', 'Atru.chr3.744' => 'acertr', 'Atru.chr6.1870' => 'acertr', 'Atru.chr9.2515' => 'acertr', 'AUR62004120' => 'cqu', 'AUR62005667' => 'cqu', 'AUR62007634' => 'cqu', 'AUR62008186' => 'cqu', 'AUR62008187' => 'cqu', 'AUR62008188' => 'cqu', 'AUR62027954' => 'cqu', 'AUR62028766' => 'cqu', 'AUR62028767' => 'cqu', 'AUR62028768' => 'cqu', 'AUR62028886' => 'cqu', 'AUR62029563' => 'cqu', 'AUR62038832' => 'cqu', 'BcaB01g04149' => 'bca', 'BcaB03g12940' => 'bca', 'BcaB03g13090' => 'bca', 'BcaB03g14466' => 'bca', 'BcaB05g24035' => 'bca', 'BcaC01g06050' => 'bca', 'BcaC04g19148' => 'bca', 'BcaC04g20761' => 'bca', 'BcaC06g32845' => 'bca', 'BcaC07g41274' => 'bca', 'BcaC09g50827' => 'bca', 'BcaNung00741' => 'bca', 'BcaNung00742' => 'bca', 'BcaNung01859' => 'bca', 'BcaNung03985' => 'bca', 'BcaNung03989' => 'bca', 'BcaNung05661' => 'bca', 'BolC1t00257H' => 'bol', 'BolC1t01956H' => 'bol', 'BolC2t06534H' => 'bol', 'BolC3t14334H' => 'bol', 'BolC5t30451H' => 'bol', 'BolC7t45880H' => 'bol', 'BolC7t46586H' => 'bol', 'BolC8t49301H' => 'bol', 'BolC8t51837H' => 'bol', 'BolC9t56822H' => 'bol', 'BolC9t59235H' => 'bol', 'BraA01t00234Z' => 'bra', 'BraA01t01563Z' => 'bra', 'BraA02t05147Z' => 'bra', 'BraA03t10947Z' => 'bra', 'BraA03t14633Z' => 'bra', 'BraA08t35112Z' => 'bra', 'BraA09t41330Z' => 'bra', 'BraA10t44570Z' => 'bra', 'C01p02670' => 'bna', 'C01p20260' => 'bna', 'C02p05890' => 'bna', 'C03p19530' => 'bna', 'C05p17470' => 'bna', 'C07p53900' => 'bna', 'C07p61630' => 'bna', 'C08p16800' => 'bna', 'C08p42810' => 'bna', 'C09p39480' => 'bna', 'C09p63980' => 'bna', 'CAN.G1001.7' => 'can', 'CAN.G1034.55' => 'can', 'CAN.G143.7' => 'can', 'CAN.G3340.1' => 'can', 'CAN.G358.19' => 'can', 'CAN.G373.2' => 'can', 'CAN.G674.16' => 'can', 'CAN.G674.17' => 'can', 'CAN.G674.18' => 'can', 'CAN.G732.2' => 'can', 'CAN.G732.3' => 'can', 'CAN.G993.39' => 'can', 'CANSAT01G2052' => 'cansat', 'CANSAT80G0070' => 'cansat', 'CANSAT80G0483' => 'cansat', 'CANSAT80G0625' => 'cansat', 'CARHR019690' => 'chi', 'CARHR080280' => 'chi', 'CARHR152750' => 'chi', 'CARHR152760' => 'chi', 'CARHR152770' => 'chi', 'CARHR200340' => 'chi', 'CARHR232370' => 'chi', 'CARHR244670' => 'chi', 'CARHR244680' => 'chi', 'CARHR257520' => 'chi', 'Carub.0001s1872' => 'cru', 'Carub.0006s1130' => 'cru', 'Carub.0007s0396' => 'cru', 'Carub.0007s0397' => 'cru', 'Carub.0007s1608' => 'cru', 'Carub.0008s1068' => 'cru', 'Carub.0008s1077' => 'cru', 'Ca_16158_v3' => 'car', 'Ca_17571_v3' => 'car', 'Ca_21936_v3' => 'car', 'Ca_22350_v3' => 'car', 'CBR_g22445' => 'cbr', 'CBR_g26290' => 'cbr', 'Cc04_g09610' => 'ccan', 'Cc04_g12280' => 'ccan', 'Cc07_g10230' => 'ccan', 'CDE02G0093' => 'cde', 'CDE02G0701' => 'cde', 'CDE04G1050' => 'cde', 'CDE05G1833' => 'cde', 'CDE05G3058' => 'cde', 'CDE05G3380' => 'cde', 'CDE06G0536' => 'cde', 'Cfa006923' => 'cfa', 'Cfa009402' => 'cfa', 'Cfa018751' => 'cfa', 'Cfa019164' => 'cfa', 'Cfa022935' => 'cfa', 'Ciclev10019081m.g' => 'ccl', 'Ciclev10025076m.g' => 'ccl', 'Ciclev10030712m.g' => 'ccl', 'Ciclev10033760m.g' => 'ccl', 'CiPaw.05G105600' => 'cil', 'CiPaw.08G136700' => 'cil', 'CiPaw.11G003900' => 'cil', 'CiPaw.11G023700' => 'cil', 'CiPaw.12G003700' => 'cil', 'ClCG06G017100' => 'cla', 'ClCG06G018110' => 'cla', 'ClCG07G008800' => 'cla', 'ClCG07G015330' => 'cla', 'COL.COLO4_13698' => 'col', 'COL.COLO4_16659' => 'col', 'COL.COLO4_21986' => 'col', 'COL.COLO4_24049' => 'col', 'COL.COLO4_29061' => 'col', 'COL.COLO4_29075' => 'col', 'COL.COLO4_30094' => 'col', 'Cpa.g.c33689' => 'cpa', 'Cpa.g.sc108.39' => 'cpa', 'Cpa.g.sc108.41' => 'cpa', 'Cpa.g.sc1163.1' => 'cpa', 'Cpa.g.sc4.155' => 'cpa', 'Cpa.g.sc6.194' => 'cpa', 'CsaV3_1G000340' => 'csa', 'CsaV3_1G001400' => 'csa', 'CsaV3_4G002220' => 'csa', 'CsaV3_4G005370' => 'csa', 'CSS0007487' => 'camsi', 'CSS0008066' => 'camsi', 'CSS0009120' => 'camsi', 'CSS0015512' => 'camsi', 'CSS0022409' => 'camsi', 'CSS0025358' => 'camsi', 'CSS0044547' => 'camsi', 'DCAR_013057' => 'dca', 'DCAR_015058' => 'dca', 'DCAR_016027' => 'dca', 'DCAR_017327' => 'dca', 'DCAR_020743' => 'dca', 'DCAR_026157' => 'dca', 'DCAR_032339' => 'dca', 'DCAR_032340' => 'dca', 'Dinv11200' => 'din', 'Dinv11201' => 'din', 'Dinv20631' => 'din', 'Dinv23182' => 'din', 'Dinv33466' => 'din', 'Dinv33583' => 'din', 'Dinv38565' => 'din', 'Duzib068G0200' => 'dzi', 'Duzib147G0132' => 'dzi', 'Duzib147G0635' => 'dzi', 'Duzib205G1670' => 'dzi', 'Duzib251G0606' => 'dzi', 'ECA232G3336' => 'eca', 'ECA232G3763' => 'eca', 'ECA232G4845' => 'eca', 'ECA234G1607' => 'eca', 'ECA246G0932' => 'eca', 'ECA247G0781' => 'eca', 'ECA247G1932' => 'eca', 'ECA247G2079' => 'eca', 'ECA247G3338' => 'eca', 'ECA247G4115' => 'eca', 'EL10Ac3g06552' => 'bvu', 'EL10Ac5g10721' => 'bvu', 'EL10Ac5g10722' => 'bvu', 'EL10Ac5g10723' => 'bvu', 'EL10Ac5g11361' => 'bvu', 'EL10Ac6g13553' => 'bvu', 'EL10As8g23872' => 'bvu', 'Eucgr.B00250' => 'egr', 'Eucgr.B00251' => 'egr', 'Eucgr.B03533' => 'egr', 'Eucgr.I02381' => 'egr', 'Eucgr.K02700' => 'egr', 'FAN02G0174' => 'fan', 'FAN02G3146' => 'fan', 'FAN04G1672' => 'fan', 'FAN04G2273' => 'fan', 'FAN05G2791' => 'fan', 'FAN05G4035' => 'fan', 'FAN07G0834' => 'fan', 'FAN08G1198' => 'fan', 'FAN09G4182' => 'fan', 'FAN12G0496' => 'fan', 'FAN13G1027' => 'fan', 'FAN13G2951' => 'fan', 'FAN14G0705' => 'fan', 'FAN14G0720' => 'fan', 'FAN17G0201' => 'fan', 'FAN17G2665' => 'fan', 'FAN18G1456' => 'fan', 'FAN18G1525' => 'fan', 'FAN18G3500' => 'fan', 'FAN28G2670' => 'fan', 'FvH4_1g12391' => 'fve', 'FvH4_4g23220' => 'fve', 'FvH4_5g08810' => 'fve', 'FvH4_5g28960' => 'fve', 'FvH4_6g42820' => 'fve', 'FvH4_6g51110' => 'fve', 'Glyma.02G051802' => 'gma', 'Glyma.04G185300' => 'gma', 'Glyma.05G202900' => 'gma', 'Glyma.08G010300' => 'gma', 'Glyma.16G131900' => 'gma', 'Glyma.17G087900' => 'gma', 'Gohir.A07G048600' => 'ghi', 'Gohir.A11G179000' => 'ghi', 'Gohir.A12G140900' => 'ghi', 'Gohir.A12G140950' => 'ghi', 'Gohir.A12G191700' => 'ghi', 'Gohir.A13G086300' => 'ghi', 'Gohir.D07G052900' => 'ghi', 'Gohir.D11G186600' => 'ghi', 'Gohir.D12G145575' => 'ghi', 'Gohir.D12G145650' => 'ghi', 'Gohir.D12G145725' => 'ghi', 'Gohir.D12G194050' => 'ghi', 'Gohir.D13G091800' => 'ghi', 'Gorai.001G055900' => 'gra', 'Gorai.007G198400' => 'gra', 'Gorai.008G157000' => 'gra', 'Gorai.008G157100' => 'gra', 'Gorai.008G208700' => 'gra', 'Gorai.010G138700' => 'gra', 'GSVIVG01000977001' => 'vvi', 'GSVIVG01007708001' => 'vvi', 'GSVIVG01008587001' => 'vvi', 'GSVIVG01018849001' => 'vvi', 'GSVIVG01032432001' => 'vvi', 'HanXRQChr02g0034131' => 'han', 'HanXRQChr02g0035981' => 'han', 'HanXRQChr02g0035991' => 'han', 'HanXRQChr05g0155611' => 'han', 'HanXRQChr05g0155621' => 'han', 'HanXRQChr08g0236501' => 'han', 'HanXRQChr09g0261321' => 'han', 'HanXRQChr09g0272081' => 'han', 'HanXRQChr10g0310741' => 'han', 'HanXRQChr11g0325591' => 'han', 'HanXRQChr12g0385691' => 'han', 'HanXRQChr13g0387801' => 'han', 'HanXRQChr15g0463011' => 'han', 'Haze_03826' => 'cav', 'Haze_03827' => 'cav', 'Haze_07183' => 'cav', 'Haze_07537' => 'cav', 'Haze_07539' => 'cav', 'Haze_12461' => 'cav', 'Haze_16115' => 'cav', 'Haze_16808' => 'cav', 'Haze_18531' => 'cav', 'Hma1.2p1_0046F.1_g026700' => 'hma', 'Hma1.2p1_0046F.1_g026710' => 'hma', 'Hma1.2p1_0168F.1_g074340' => 'hma', 'Hma1.2p1_0266F.1_g107030' => 'hma', 'Hma1.2p1_0266F.1_g107060' => 'hma', 'Hma1.2p1_0275F.1_g110510' => 'hma', 'Hma1.2p1_0592F.1_g185490' => 'hma', 'Hma1.2p1_0592F.1_g185500' => 'hma', 'Hma1.2p1_0592F.1_g185510' => 'hma', 'Hma1.2p1_0592F.1_g185520' => 'hma', 'Hma1.2p1_0592F.1_g185530' => 'hma', 'Hma1.2p1_0818F.1_g223450' => 'hma', 'HPP92_009708' => 'vpl', 'HPP92_009793' => 'vpl', 'HPP92_009796' => 'vpl', 'HPP92_009797' => 'vpl', 'HPP92_014940' => 'vpl', 'HPP92_014988' => 'vpl', 'Hund02463' => 'sun', 'Hund02760' => 'sun', 'Hund05071' => 'sun', 'Hund10108' => 'sun', 'Hund11204' => 'sun', 'Hund14016' => 'sun', 'Hund16464' => 'sun', 'Lalb_Chr09g0333391' => 'lal', 'Lalb_Chr11g0070461' => 'lal', 'Lalb_Chr12g0201671' => 'lal', 'Lalb_Chr13g0297161' => 'lal', 'Lj1g0002823' => 'lja', 'Lj3C1074T6' => 'lonja', 'Lj4A212T28' => 'lonja', 'Lj4g0005516' => 'lja', 'Lj4g0013705' => 'lja', 'Lj4g0027865' => 'lja', 'Lj5C92G16' => 'lonja', 'Lj5C92T12' => 'lonja', 'Lj7C596T3' => 'lonja', 'Lj9A446G59' => 'lonja', 'Lj9A482G21' => 'lonja', 'Lsat_1_v5_gn_1_28261' => 'lsa', 'Lsat_1_v5_gn_1_28281' => 'lsa', 'Lsat_1_v5_gn_1_32721' => 'lsa', 'Lsat_1_v5_gn_4_151760' => 'lsa', 'Lsat_1_v5_gn_4_2120' => 'lsa', 'Lsat_1_v5_gn_4_75761' => 'lsa', 'Lsat_1_v5_gn_5_10920' => 'lsa', 'Manes.02G099900' => 'mes', 'Manes.11G096200' => 'mes', 'Manes.12G007200' => 'mes', 'Manes.14G048300' => 'mes', 'Manes.17G114700' => 'mes', 'Mapoly0002s0070' => 'mpo', 'Mapoly0029s0099' => 'mpo', 'MBI07_g24742_MAGBIO' => 'mbi', 'MBI10_g27988_MAGBIO' => 'mbi', 'MBI11_g13057_MAGBIO' => 'mbi', 'MD02G1137200' => 'mdo', 'MD06G1137200' => 'mdo', 'MD07G1122300' => 'mdo', 'MD09G1078200' => 'mdo', 'MD13G1123700' => 'mdo', 'MD14G1151900' => 'mdo', 'MD17G1030900' => 'mdo', 'MD17G1068200' => 'mdo', 'MD17G1068600' => 'mdo', 'Medtr3g077540' => 'mtr', 'Medtr4g105530' => 'mtr', 'Medtr8g076580' => 'mtr', 'Medtr8g076590' => 'mtr', 'Medtr8g096410' => 'mtr', 'MELO3C016411.2' => 'cme', 'MELO3C017780.2' => 'cme', 'MELO3C022560.2' => 'cme', 'MELO3C026187.2' => 'cme', 'MELO3C026286.2' => 'cme', 'MELO3C032854.2' => 'cme', 'Migut.H02495' => 'egut', 'Migut.I00561' => 'egut', 'Migut.K01015' => 'egut', 'Migut.K01016' => 'egut', 'Migut.L00743' => 'egut', 'Migut.L00744' => 'egut', 'Migut.L00746' => 'egut', 'Migut.L00798' => 'egut', 'Migut.L00799' => 'egut', 'Migut.N02096' => 'egut', 'MSTRG.11259' => 'ama', 'MSTRG.23142' => 'ama', 'MSTRG.2499' => 'ama', 'Nitab4.5_0000003g0730' => 'nta', 'Nitab4.5_0000137g0020' => 'nta', 'Nitab4.5_0000721g0210' => 'nta', 'Nitab4.5_0000723g0050' => 'nta', 'Nitab4.5_0000913g0070' => 'nta', 'Nitab4.5_0001332g0040' => 'nta', 'Nitab4.5_0001771g0050' => 'nta', 'Nitab4.5_0001918g0050' => 'nta', 'Nitab4.5_0002686g0030' => 'nta', 'Nitab4.5_0003156g0020' => 'nta', 'Nitab4.5_0003383g0040' => 'nta', 'Nitab4.5_0003918g0010' => 'nta', 'Nitab4.5_0006760g0010' => 'nta', 'Nn1g05981' => 'nnu', 'Nn1g06288' => 'nnu', 'Nn3g16371' => 'nnu', 'Nn3g16786' => 'nnu', 'Nn4g22232' => 'nnu', 'Oeu005144.1' => 'oeu', 'Oeu005145.1' => 'oeu', 'Oeu011348.1' => 'oeu', 'Oeu016415.1' => 'oeu', 'Oeu023501.1' => 'oeu', 'Oeu044473.1' => 'oeu', 'Oeu048892.2' => 'oeu', 'Os01g0549200' => 'osa', 'Os02g0469300' => 'osa', 'Os04g0311100' => 'osa', 'Os06g0474900' => 'osa', 'Os10g0181700' => 'osa', 'Os11g0454800' => 'osa', 'Peaxi162Scf00037g00714' => 'pax', 'Peaxi162Scf00084g01217' => 'pax', 'Peaxi162Scf00257g00217' => 'pax', 'Peaxi162Scf00516g00215' => 'pax', 'Peaxi162Scf00689g00123' => 'pax', 'PGR044G2719' => 'pgr', 'PGR083G1360' => 'pgr', 'PGR102G2849' => 'pgr', 'PGR119G2534' => 'pgr', 'PGSC0003DMG400003538' => 'stu', 'PGSC0003DMG400028138' => 'stu', 'PGSC0003DMG400031732' => 'stu', 'PGSC0003DMG400038165' => 'stu', 'Phvul.002G284600' => 'pvu', 'Phvul.003G258200' => 'pvu', 'Phvul.009G176500' => 'pvu', 'Potri.003G167201' => 'ptr', 'Potri.005G118400' => 'ptr', 'Potri.012G089000' => 'ptr', 'Potri.012G102800' => 'ptr', 'Potri.015G079400' => 'ptr', 'Potri.015G100900' => 'ptr', 'Pp3c14_9810' => 'ppa', 'Pp3c15_10450' => 'ppa', 'Pp3c20_19150' => 'ppa', 'Pp3c23_12740' => 'ppa', 'Pp3c23_6310' => 'ppa', 'Pp3c24_3720' => 'ppa', 'Pp3c27_2580' => 'ppa', 'Pp3c9_8990' => 'ppa', 'PRCOL_00002854' => 'pco', 'Prupe.1G221200' => 'ppe', 'Prupe.3G289000' => 'ppe', 'Prupe.5G147000' => 'ppe', 'Prupe.6G157300' => 'ppe', 'Prupe.7G163400' => 'ppe', 'Psat0s2177g0040' => 'psa', 'Psat3g174760' => 'psa', 'Psat3g192160' => 'psa', 'Psat4g058520' => 'psa', 'Psat4g096840' => 'psa', 'Psat7g037320' => 'psa', 'PSO017G1274' => 'pso', 'PSO017G5166' => 'pso', 'PSO063G4558' => 'pso', 'PSO170G4458' => 'pso', 'PSO170G5005' => 'pso', 'PSO210G6156' => 'pso', 'PSO210G6635' => 'pso', 'PSO210G7397' => 'pso', 'PSO210G7700' => 'pso', 'PSO455G0035' => 'pso', 'PSO455G0180' => 'pso', 'PSO478G4515' => 'pso', 'PSO832G1305' => 'pso', 'PSO832G3489' => 'pso', 'QL02p075247' => 'qlo', 'QL03p051148' => 'qlo', 'QL05p010313' => 'qlo', 'QL06p034627' => 'qlo', 'QL10p001889' => 'qlo', 'QL10p010846' => 'qlo', 'RcHm_v2.0_Chr1g0350621' => 'rch', 'RcHm_v2.0_Chr1g0350641' => 'rch', 'RcHm_v2.0_Chr2g0092891' => 'rch', 'RcHm_v2.0_Chr2g0100251' => 'rch', 'RcHm_v2.0_Chr2g0158661' => 'rch', 'RcHm_v2.0_Chr2g0172741' => 'rch', 'RcHm_v2.0_Chr4g0429571' => 'rch', 'RcHm_v2.0_Chr5g0042471' => 'rch', 'RcHm_v2.0_Chr7g0189451' => 'rch', 'Rhsim08G0052000' => 'rsi', 'Rhsim08G0174400' => 'rsi', 'Rhsim08G0193200' => 'rsi', 'Rhsim10G0214800' => 'rsi', 'Rhsim10G0214900' => 'rsi', 'Rhsim10G0215000' => 'rsi', 'Rhsim12G0022900' => 'rsi', 'Rhsim12G0177500' => 'rsi', 'Rhsim12G0177700' => 'rsi', 'Sabra03G0122600' => 'sbr', 'Sabra05G0097400' => 'sbr', 'Sabra12G0064100' => 'sbr', 'Sabra15G0121300' => 'sbr', 'SalBow2G0642' => 'sbo', 'SalBow5G2667' => 'sbo', 'SalBow5G4873' => 'sbo', 'SalBow8G2395' => 'sbo', 'Sc03g0003290' => 'sci', 'Sc10g0010130' => 'sci', 'Sc22g0003650' => 'sci', 'Sed0001603' => 'sed', 'Sed0004259' => 'sed', 'Sed0006789' => 'sed', 'Sed0011838' => 'sed', 'Sed0012964' => 'sed', 'Sed0016383' => 'sed', 'Sed0019010' => 'sed', 'Sed0020188' => 'sed', 'SEGI_04702' => 'sgi', 'SEGI_17231' => 'sgi', 'SEGI_18877' => 'sgi', 'SEGI_25196' => 'sgi', 'SEGI_25515' => 'sgi', 'SEGI_28445' => 'sgi', 'SEGI_37452' => 'sgi', 'SGA_v2.0_scaffold188G40336' => 'sas', 'SGA_v2.0_scaffold228G43247' => 'sas', 'SGA_v2.0_scaffold280G46853' => 'sas', 'SGA_v2.0_scaffold34G13808' => 'sas', 'SGA_v2.0_scaffold40G15576' => 'sas', 'SGA_v2.0_scaffold611G53188' => 'sas', 'SGA_v2.0_scaffold78G25461' => 'sas', 'SGA_v2.0_scaffold90G27888' => 'sas', 'SHI08601' => 'shi', 'SHI08606' => 'shi', 'SHI17117' => 'shi', 'SHI17119' => 'shi', 'SMO118G0201' => 'smo', 'SMO169G0247' => 'smo', 'SMO176G0006' => 'smo', 'SMO176G0015' => 'smo', 'SMO202G0006' => 'smo', 'SMO240G0050' => 'smo', 'SMO286G0009' => 'smo', 'SMO338G0033' => 'smo', 'SMO356G0533' => 'smo', 'SMO364G0382' => 'smo', 'SMO367G0166' => 'smo', 'SMO367G1098' => 'smo', 'Solyc01g009920.3' => 'sly', 'Solyc01g099300.3' => 'sly', 'Solyc02g084700.3' => 'sly', 'Solyc03g097520.3' => 'sly', 'Solyc06g071580.3' => 'sly', 'Solyc10g081760.3' => 'sly', 'Sopen01g005480' => 'spe', 'Sopen01g042850' => 'spe', 'Sopen02g029370' => 'spe', 'Sopen03g028280' => 'spe', 'Sopen06g027870' => 'spe', 'Sopen10g032270' => 'spe', 'Sp5g18180' => 'spa', 'Sp6g12880' => 'spa', 'Sp6g30850' => 'spa', 'Sp7g22960' => 'spa', 'Sp7g34010' => 'spa', 'SpUn1326_0010' => 'spa', 'TAR371G0242' => 'tar', 'TAR622G0638' => 'tar', 'TAR628G1548' => 'tar', 'TAR629G1079' => 'tar', 'TAR629G3413' => 'tar', 'THA.LOC104804249' => 'tha', 'THA.LOC104808315' => 'tha', 'THA.LOC104809238' => 'tha', 'THA.LOC104825484' => 'tha', 'Thecc.01G025500' => 'tca', 'Thecc.03G015800' => 'tca', 'Thecc.03G018000' => 'tca', 'Thecc.03G134800' => 'tca', 'Thecc.04G014700' => 'tca', 'Thhalv10006991m.g' => 'esa', 'Thhalv10012707m.g' => 'esa', 'Thhalv10015739m.g' => 'esa', 'Thhalv10024553m.g' => 'esa', 'Thhalv10024673m.g' => 'esa', 'Thhalv10029187m.g' => 'esa', 'TPR.G12971' => 'tpr', 'TPR.G29396' => 'tpr', 'TPR.G33376' => 'tpr', 'TPR.G35508' => 'tpr', 'TPR.G35516' => 'tpr', 'TPR.G37317' => 'tpr', 'TPR.G37389' => 'tpr', 'TPR.G37523' => 'tpr', 'TPR.G559' => 'tpr', 'TWI14G0070' => 'twi', 'TWI14G0729' => 'twi', 'TWI18G0596' => 'twi', 'TWI39G0780' => 'twi', 'TWI39G0850' => 'twi', 'TWI73G1052' => 'twi', 'unitig_52.g17485' => 'ugi', 'unitig_61.g26355' => 'ugi', 'vmacro01040' => 'vma', 'vmacro16731' => 'vma', 'vmacro18270' => 'vma', 'vmacro19142' => 'vma', 'vmacro19407' => 'vma', 'vmacro19408' => 'vma', 'vmacro21899' => 'vma', 'vmacro21900' => 'vma', 'vmacro21901' => 'vma', 'VMungo0251G0490' => 'vmu', 'VMungo0251G1748' => 'vmu', 'VMungo1309G0421' => 'vmu', 'Zm00001eb086500' => 'zma', 'Zm00001eb150680' => 'zma', 'Zm00001eb162330' => 'zma', 'Zm00001eb203130' => 'zma', 'Zm00001eb369480' => 'zma', 'Zm00001eb382340' => 'zma', 'Zm00001eb416360' => 'zma' ) $gf_id = 'HOM05D000902' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000902' ) $data_identifier = 'HOM05D000902' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 13, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 10, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 6, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 9, 'hma' => (int) 12, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 4, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 6, 'ppa' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 6, 'rch' => (int) 9, 'rsi' => (int) 9, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 12, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 3, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416360' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000902', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '663', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02470' => 'bna', 'A01p16260' => 'bna', 'A02p01680' => 'bna', 'A03p16600' => 'bna', 'A03p55660' => 'bna', 'A03p64160' => 'bna', 'A03p64170' => 'bna', 'A08p31900' => 'bna', 'A09p59530' => 'bna', 'A10p08230' => 'bna', 'A10p25090' => 'bna', 'Aa31LG3G7100' => 'aar', 'Aa31LG3G7110' => 'aar', 'Aa31LG6G13160' => 'aar', 'Aa31LG7G10770' => 'aar', 'Aa31LG7G3830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2723' => 'aag', 'Actinidia08045' => 'ach', 'Actinidia08888' => 'ach', 'Actinidia18333' => 'ach', 'Actinidia19334' => 'ach', 'Actinidia25552' => 'ach', 'Actinidia26089' => 'ach', 'Actinidia30615' => 'ach', 'Actinidia30616' => 'ach', 'Actinidia33083' => 'ach', 'Actinidia35762' => 'ach', 'Ah.02g110620' => 'amhyb', 'Ah.11g046390' => 'amhyb', 'AL1G31670' => 'aly', 'AL6G23730' => 'aly', 'AL7G14740' => 'aly', 'AL7G14750' => 'aly', 'AL7G14760' => 'aly', 'AL7G28220' => 'aly', 'AL8G24940' => 'aly', 'Aqoxy3G01665' => 'aox', 'Aqoxy3G02853' => 'aox', 'Aqoxy5G01513' => 'aox', 'Aqoxy5G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8SKA4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ75LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKDA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0LJZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7REX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZP4YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWX7I5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2QKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS0L9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPCD8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q161UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC7XCF' => 'arhy', 'AT1G19100' => 'ath', 'AT4G24970' => 'ath', 'AT4G36270' => 'ath', 'AT4G36280' => 'ath', 'AT4G36290' => 'ath', 'AT5G13130' => 'ath', 'AT5G50780' => 'ath', 'ATR0582G266' => 'atr', 'ATR0661G195' => 'atr', 'ATR1152G031' => 'atr', 'Atru.chr11.2382' => 'acertr', 'Atru.chr12.2337' => 'acertr', 'Atru.chr3.744' => 'acertr', 'Atru.chr6.1870' => 'acertr', 'Atru.chr9.2515' => 'acertr', 'AUR62004120' => 'cqu', 'AUR62005667' => 'cqu', 'AUR62007634' => 'cqu', 'AUR62008186' => 'cqu', 'AUR62008187' => 'cqu', 'AUR62008188' => 'cqu', 'AUR62027954' => 'cqu', 'AUR62028766' => 'cqu', 'AUR62028767' => 'cqu', 'AUR62028768' => 'cqu', 'AUR62028886' => 'cqu', 'AUR62029563' => 'cqu', 'AUR62038832' => 'cqu', 'BcaB01g04149' => 'bca', 'BcaB03g12940' => 'bca', 'BcaB03g13090' => 'bca', 'BcaB03g14466' => 'bca', 'BcaB05g24035' => 'bca', 'BcaC01g06050' => 'bca', 'BcaC04g19148' => 'bca', 'BcaC04g20761' => 'bca', 'BcaC06g32845' => 'bca', 'BcaC07g41274' => 'bca', 'BcaC09g50827' => 'bca', 'BcaNung00741' => 'bca', 'BcaNung00742' => 'bca', 'BcaNung01859' => 'bca', 'BcaNung03985' => 'bca', 'BcaNung03989' => 'bca', 'BcaNung05661' => 'bca', 'BolC1t00257H' => 'bol', 'BolC1t01956H' => 'bol', 'BolC2t06534H' => 'bol', 'BolC3t14334H' => 'bol', 'BolC5t30451H' => 'bol', 'BolC7t45880H' => 'bol', 'BolC7t46586H' => 'bol', 'BolC8t49301H' => 'bol', 'BolC8t51837H' => 'bol', 'BolC9t56822H' => 'bol', 'BolC9t59235H' => 'bol', 'BraA01t00234Z' => 'bra', 'BraA01t01563Z' => 'bra', 'BraA02t05147Z' => 'bra', 'BraA03t10947Z' => 'bra', 'BraA03t14633Z' => 'bra', 'BraA08t35112Z' => 'bra', 'BraA09t41330Z' => 'bra', 'BraA10t44570Z' => 'bra', 'C01p02670' => 'bna', 'C01p20260' => 'bna', 'C02p05890' => 'bna', 'C03p19530' => 'bna', 'C05p17470' => 'bna', 'C07p53900' => 'bna', 'C07p61630' => 'bna', 'C08p16800' => 'bna', 'C08p42810' => 'bna', 'C09p39480' => 'bna', 'C09p63980' => 'bna', 'CAN.G1001.7' => 'can', 'CAN.G1034.55' => 'can', 'CAN.G143.7' => 'can', 'CAN.G3340.1' => 'can', 'CAN.G358.19' => 'can', 'CAN.G373.2' => 'can', 'CAN.G674.16' => 'can', 'CAN.G674.17' => 'can', 'CAN.G674.18' => 'can', 'CAN.G732.2' => 'can', 'CAN.G732.3' => 'can', 'CAN.G993.39' => 'can', 'CANSAT01G2052' => 'cansat', 'CANSAT80G0070' => 'cansat', 'CANSAT80G0483' => 'cansat', 'CANSAT80G0625' => 'cansat', 'CARHR019690' => 'chi', 'CARHR080280' => 'chi', 'CARHR152750' => 'chi', 'CARHR152760' => 'chi', 'CARHR152770' => 'chi', 'CARHR200340' => 'chi', 'CARHR232370' => 'chi', 'CARHR244670' => 'chi', 'CARHR244680' => 'chi', 'CARHR257520' => 'chi', 'Carub.0001s1872' => 'cru', 'Carub.0006s1130' => 'cru', 'Carub.0007s0396' => 'cru', 'Carub.0007s0397' => 'cru', 'Carub.0007s1608' => 'cru', 'Carub.0008s1068' => 'cru', 'Carub.0008s1077' => 'cru', 'Ca_16158_v3' => 'car', 'Ca_17571_v3' => 'car', 'Ca_21936_v3' => 'car', 'Ca_22350_v3' => 'car', 'CBR_g22445' => 'cbr', 'CBR_g26290' => 'cbr', 'Cc04_g09610' => 'ccan', 'Cc04_g12280' => 'ccan', 'Cc07_g10230' => 'ccan', 'CDE02G0093' => 'cde', 'CDE02G0701' => 'cde', 'CDE04G1050' => 'cde', 'CDE05G1833' => 'cde', 'CDE05G3058' => 'cde', 'CDE05G3380' => 'cde', 'CDE06G0536' => 'cde', 'Cfa006923' => 'cfa', 'Cfa009402' => 'cfa', 'Cfa018751' => 'cfa', 'Cfa019164' => 'cfa', 'Cfa022935' => 'cfa', 'Ciclev10019081m.g' => 'ccl', 'Ciclev10025076m.g' => 'ccl', 'Ciclev10030712m.g' => 'ccl', 'Ciclev10033760m.g' => 'ccl', 'CiPaw.05G105600' => 'cil', 'CiPaw.08G136700' => 'cil', 'CiPaw.11G003900' => 'cil', 'CiPaw.11G023700' => 'cil', 'CiPaw.12G003700' => 'cil', 'ClCG06G017100' => 'cla', 'ClCG06G018110' => 'cla', 'ClCG07G008800' => 'cla', 'ClCG07G015330' => 'cla', 'COL.COLO4_13698' => 'col', 'COL.COLO4_16659' => 'col', 'COL.COLO4_21986' => 'col', 'COL.COLO4_24049' => 'col', 'COL.COLO4_29061' => 'col', 'COL.COLO4_29075' => 'col', 'COL.COLO4_30094' => 'col', 'Cpa.g.c33689' => 'cpa', 'Cpa.g.sc108.39' => 'cpa', 'Cpa.g.sc108.41' => 'cpa', 'Cpa.g.sc1163.1' => 'cpa', 'Cpa.g.sc4.155' => 'cpa', 'Cpa.g.sc6.194' => 'cpa', 'CsaV3_1G000340' => 'csa', 'CsaV3_1G001400' => 'csa', 'CsaV3_4G002220' => 'csa', 'CsaV3_4G005370' => 'csa', 'CSS0007487' => 'camsi', 'CSS0008066' => 'camsi', 'CSS0009120' => 'camsi', 'CSS0015512' => 'camsi', 'CSS0022409' => 'camsi', 'CSS0025358' => 'camsi', 'CSS0044547' => 'camsi', 'DCAR_013057' => 'dca', 'DCAR_015058' => 'dca', 'DCAR_016027' => 'dca', 'DCAR_017327' => 'dca', 'DCAR_020743' => 'dca', 'DCAR_026157' => 'dca', 'DCAR_032339' => 'dca', 'DCAR_032340' => 'dca', 'Dinv11200' => 'din', 'Dinv11201' => 'din', 'Dinv20631' => 'din', 'Dinv23182' => 'din', 'Dinv33466' => 'din', 'Dinv33583' => 'din', 'Dinv38565' => 'din', 'Duzib068G0200' => 'dzi', 'Duzib147G0132' => 'dzi', 'Duzib147G0635' => 'dzi', 'Duzib205G1670' => 'dzi', 'Duzib251G0606' => 'dzi', 'ECA232G3336' => 'eca', 'ECA232G3763' => 'eca', 'ECA232G4845' => 'eca', 'ECA234G1607' => 'eca', 'ECA246G0932' => 'eca', 'ECA247G0781' => 'eca', 'ECA247G1932' => 'eca', 'ECA247G2079' => 'eca', 'ECA247G3338' => 'eca', 'ECA247G4115' => 'eca', 'EL10Ac3g06552' => 'bvu', 'EL10Ac5g10721' => 'bvu', 'EL10Ac5g10722' => 'bvu', 'EL10Ac5g10723' => 'bvu', 'EL10Ac5g11361' => 'bvu', 'EL10Ac6g13553' => 'bvu', 'EL10As8g23872' => 'bvu', 'Eucgr.B00250' => 'egr', 'Eucgr.B00251' => 'egr', 'Eucgr.B03533' => 'egr', 'Eucgr.I02381' => 'egr', 'Eucgr.K02700' => 'egr', 'FAN02G0174' => 'fan', 'FAN02G3146' => 'fan', 'FAN04G1672' => 'fan', 'FAN04G2273' => 'fan', 'FAN05G2791' => 'fan', 'FAN05G4035' => 'fan', 'FAN07G0834' => 'fan', 'FAN08G1198' => 'fan', 'FAN09G4182' => 'fan', 'FAN12G0496' => 'fan', 'FAN13G1027' => 'fan', 'FAN13G2951' => 'fan', 'FAN14G0705' => 'fan', 'FAN14G0720' => 'fan', 'FAN17G0201' => 'fan', 'FAN17G2665' => 'fan', 'FAN18G1456' => 'fan', 'FAN18G1525' => 'fan', 'FAN18G3500' => 'fan', 'FAN28G2670' => 'fan', 'FvH4_1g12391' => 'fve', 'FvH4_4g23220' => 'fve', 'FvH4_5g08810' => 'fve', 'FvH4_5g28960' => 'fve', 'FvH4_6g42820' => 'fve', 'FvH4_6g51110' => 'fve', 'Glyma.02G051802' => 'gma', 'Glyma.04G185300' => 'gma', 'Glyma.05G202900' => 'gma', 'Glyma.08G010300' => 'gma', 'Glyma.16G131900' => 'gma', 'Glyma.17G087900' => 'gma', 'Gohir.A07G048600' => 'ghi', 'Gohir.A11G179000' => 'ghi', 'Gohir.A12G140900' => 'ghi', 'Gohir.A12G140950' => 'ghi', 'Gohir.A12G191700' => 'ghi', 'Gohir.A13G086300' => 'ghi', 'Gohir.D07G052900' => 'ghi', 'Gohir.D11G186600' => 'ghi', 'Gohir.D12G145575' => 'ghi', 'Gohir.D12G145650' => 'ghi', 'Gohir.D12G145725' => 'ghi', 'Gohir.D12G194050' => 'ghi', 'Gohir.D13G091800' => 'ghi', 'Gorai.001G055900' => 'gra', 'Gorai.007G198400' => 'gra', 'Gorai.008G157000' => 'gra', 'Gorai.008G157100' => 'gra', 'Gorai.008G208700' => 'gra', 'Gorai.010G138700' => 'gra', 'GSVIVG01000977001' => 'vvi', 'GSVIVG01007708001' => 'vvi', 'GSVIVG01008587001' => 'vvi', 'GSVIVG01018849001' => 'vvi', 'GSVIVG01032432001' => 'vvi', 'HanXRQChr02g0034131' => 'han', 'HanXRQChr02g0035981' => 'han', 'HanXRQChr02g0035991' => 'han', 'HanXRQChr05g0155611' => 'han', 'HanXRQChr05g0155621' => 'han', 'HanXRQChr08g0236501' => 'han', 'HanXRQChr09g0261321' => 'han', 'HanXRQChr09g0272081' => 'han', 'HanXRQChr10g0310741' => 'han', 'HanXRQChr11g0325591' => 'han', 'HanXRQChr12g0385691' => 'han', 'HanXRQChr13g0387801' => 'han', 'HanXRQChr15g0463011' => 'han', 'Haze_03826' => 'cav', 'Haze_03827' => 'cav', 'Haze_07183' => 'cav', 'Haze_07537' => 'cav', 'Haze_07539' => 'cav', 'Haze_12461' => 'cav', 'Haze_16115' => 'cav', 'Haze_16808' => 'cav', 'Haze_18531' => 'cav', 'Hma1.2p1_0046F.1_g026700' => 'hma', 'Hma1.2p1_0046F.1_g026710' => 'hma', 'Hma1.2p1_0168F.1_g074340' => 'hma', 'Hma1.2p1_0266F.1_g107030' => 'hma', 'Hma1.2p1_0266F.1_g107060' => 'hma', 'Hma1.2p1_0275F.1_g110510' => 'hma', 'Hma1.2p1_0592F.1_g185490' => 'hma', 'Hma1.2p1_0592F.1_g185500' => 'hma', 'Hma1.2p1_0592F.1_g185510' => 'hma', 'Hma1.2p1_0592F.1_g185520' => 'hma', 'Hma1.2p1_0592F.1_g185530' => 'hma', 'Hma1.2p1_0818F.1_g223450' => 'hma', 'HPP92_009708' => 'vpl', 'HPP92_009793' => 'vpl', 'HPP92_009796' => 'vpl', 'HPP92_009797' => 'vpl', 'HPP92_014940' => 'vpl', 'HPP92_014988' => 'vpl', 'Hund02463' => 'sun', 'Hund02760' => 'sun', 'Hund05071' => 'sun', 'Hund10108' => 'sun', 'Hund11204' => 'sun', 'Hund14016' => 'sun', 'Hund16464' => 'sun', 'Lalb_Chr09g0333391' => 'lal', 'Lalb_Chr11g0070461' => 'lal', 'Lalb_Chr12g0201671' => 'lal', 'Lalb_Chr13g0297161' => 'lal', 'Lj1g0002823' => 'lja', 'Lj3C1074T6' => 'lonja', 'Lj4A212T28' => 'lonja', 'Lj4g0005516' => 'lja', 'Lj4g0013705' => 'lja', 'Lj4g0027865' => 'lja', 'Lj5C92G16' => 'lonja', 'Lj5C92T12' => 'lonja', 'Lj7C596T3' => 'lonja', 'Lj9A446G59' => 'lonja', 'Lj9A482G21' => 'lonja', 'Lsat_1_v5_gn_1_28261' => 'lsa', 'Lsat_1_v5_gn_1_28281' => 'lsa', 'Lsat_1_v5_gn_1_32721' => 'lsa', 'Lsat_1_v5_gn_4_151760' => 'lsa', 'Lsat_1_v5_gn_4_2120' => 'lsa', 'Lsat_1_v5_gn_4_75761' => 'lsa', 'Lsat_1_v5_gn_5_10920' => 'lsa', 'Manes.02G099900' => 'mes', 'Manes.11G096200' => 'mes', 'Manes.12G007200' => 'mes', 'Manes.14G048300' => 'mes', 'Manes.17G114700' => 'mes', 'Mapoly0002s0070' => 'mpo', 'Mapoly0029s0099' => 'mpo', 'MBI07_g24742_MAGBIO' => 'mbi', 'MBI10_g27988_MAGBIO' => 'mbi', 'MBI11_g13057_MAGBIO' => 'mbi', 'MD02G1137200' => 'mdo', 'MD06G1137200' => 'mdo', 'MD07G1122300' => 'mdo', 'MD09G1078200' => 'mdo', 'MD13G1123700' => 'mdo', 'MD14G1151900' => 'mdo', 'MD17G1030900' => 'mdo', 'MD17G1068200' => 'mdo', 'MD17G1068600' => 'mdo', 'Medtr3g077540' => 'mtr', 'Medtr4g105530' => 'mtr', 'Medtr8g076580' => 'mtr', 'Medtr8g076590' => 'mtr', 'Medtr8g096410' => 'mtr', 'MELO3C016411.2' => 'cme', 'MELO3C017780.2' => 'cme', 'MELO3C022560.2' => 'cme', 'MELO3C026187.2' => 'cme', 'MELO3C026286.2' => 'cme', 'MELO3C032854.2' => 'cme', 'Migut.H02495' => 'egut', 'Migut.I00561' => 'egut', 'Migut.K01015' => 'egut', 'Migut.K01016' => 'egut', 'Migut.L00743' => 'egut', 'Migut.L00744' => 'egut', 'Migut.L00746' => 'egut', 'Migut.L00798' => 'egut', 'Migut.L00799' => 'egut', 'Migut.N02096' => 'egut', 'MSTRG.11259' => 'ama', 'MSTRG.23142' => 'ama', 'MSTRG.2499' => 'ama', 'Nitab4.5_0000003g0730' => 'nta', 'Nitab4.5_0000137g0020' => 'nta', 'Nitab4.5_0000721g0210' => 'nta', 'Nitab4.5_0000723g0050' => 'nta', 'Nitab4.5_0000913g0070' => 'nta', 'Nitab4.5_0001332g0040' => 'nta', 'Nitab4.5_0001771g0050' => 'nta', 'Nitab4.5_0001918g0050' => 'nta', 'Nitab4.5_0002686g0030' => 'nta', 'Nitab4.5_0003156g0020' => 'nta', 'Nitab4.5_0003383g0040' => 'nta', 'Nitab4.5_0003918g0010' => 'nta', 'Nitab4.5_0006760g0010' => 'nta', 'Nn1g05981' => 'nnu', 'Nn1g06288' => 'nnu', 'Nn3g16371' => 'nnu', 'Nn3g16786' => 'nnu', 'Nn4g22232' => 'nnu', 'Oeu005144.1' => 'oeu', 'Oeu005145.1' => 'oeu', 'Oeu011348.1' => 'oeu', 'Oeu016415.1' => 'oeu', 'Oeu023501.1' => 'oeu', 'Oeu044473.1' => 'oeu', 'Oeu048892.2' => 'oeu', 'Os01g0549200' => 'osa', 'Os02g0469300' => 'osa', 'Os04g0311100' => 'osa', 'Os06g0474900' => 'osa', 'Os10g0181700' => 'osa', 'Os11g0454800' => 'osa', 'Peaxi162Scf00037g00714' => 'pax', 'Peaxi162Scf00084g01217' => 'pax', 'Peaxi162Scf00257g00217' => 'pax', 'Peaxi162Scf00516g00215' => 'pax', 'Peaxi162Scf00689g00123' => 'pax', 'PGR044G2719' => 'pgr', 'PGR083G1360' => 'pgr', 'PGR102G2849' => 'pgr', 'PGR119G2534' => 'pgr', 'PGSC0003DMG400003538' => 'stu', 'PGSC0003DMG400028138' => 'stu', 'PGSC0003DMG400031732' => 'stu', 'PGSC0003DMG400038165' => 'stu', 'Phvul.002G284600' => 'pvu', 'Phvul.003G258200' => 'pvu', 'Phvul.009G176500' => 'pvu', 'Potri.003G167201' => 'ptr', 'Potri.005G118400' => 'ptr', 'Potri.012G089000' => 'ptr', 'Potri.012G102800' => 'ptr', 'Potri.015G079400' => 'ptr', 'Potri.015G100900' => 'ptr', 'Pp3c14_9810' => 'ppa', 'Pp3c15_10450' => 'ppa', 'Pp3c20_19150' => 'ppa', 'Pp3c23_12740' => 'ppa', 'Pp3c23_6310' => 'ppa', 'Pp3c24_3720' => 'ppa', 'Pp3c27_2580' => 'ppa', 'Pp3c9_8990' => 'ppa', 'PRCOL_00002854' => 'pco', 'Prupe.1G221200' => 'ppe', 'Prupe.3G289000' => 'ppe', 'Prupe.5G147000' => 'ppe', 'Prupe.6G157300' => 'ppe', 'Prupe.7G163400' => 'ppe', 'Psat0s2177g0040' => 'psa', 'Psat3g174760' => 'psa', 'Psat3g192160' => 'psa', 'Psat4g058520' => 'psa', 'Psat4g096840' => 'psa', 'Psat7g037320' => 'psa', 'PSO017G1274' => 'pso', 'PSO017G5166' => 'pso', 'PSO063G4558' => 'pso', 'PSO170G4458' => 'pso', 'PSO170G5005' => 'pso', 'PSO210G6156' => 'pso', 'PSO210G6635' => 'pso', 'PSO210G7397' => 'pso', 'PSO210G7700' => 'pso', 'PSO455G0035' => 'pso', 'PSO455G0180' => 'pso', 'PSO478G4515' => 'pso', 'PSO832G1305' => 'pso', 'PSO832G3489' => 'pso', 'QL02p075247' => 'qlo', 'QL03p051148' => 'qlo', 'QL05p010313' => 'qlo', 'QL06p034627' => 'qlo', 'QL10p001889' => 'qlo', 'QL10p010846' => 'qlo', 'RcHm_v2.0_Chr1g0350621' => 'rch', 'RcHm_v2.0_Chr1g0350641' => 'rch', 'RcHm_v2.0_Chr2g0092891' => 'rch', 'RcHm_v2.0_Chr2g0100251' => 'rch', 'RcHm_v2.0_Chr2g0158661' => 'rch', 'RcHm_v2.0_Chr2g0172741' => 'rch', 'RcHm_v2.0_Chr4g0429571' => 'rch', 'RcHm_v2.0_Chr5g0042471' => 'rch', 'RcHm_v2.0_Chr7g0189451' => 'rch', 'Rhsim08G0052000' => 'rsi', 'Rhsim08G0174400' => 'rsi', 'Rhsim08G0193200' => 'rsi', 'Rhsim10G0214800' => 'rsi', 'Rhsim10G0214900' => 'rsi', 'Rhsim10G0215000' => 'rsi', 'Rhsim12G0022900' => 'rsi', 'Rhsim12G0177500' => 'rsi', 'Rhsim12G0177700' => 'rsi', 'Sabra03G0122600' => 'sbr', 'Sabra05G0097400' => 'sbr', 'Sabra12G0064100' => 'sbr', 'Sabra15G0121300' => 'sbr', 'SalBow2G0642' => 'sbo', 'SalBow5G2667' => 'sbo', 'SalBow5G4873' => 'sbo', 'SalBow8G2395' => 'sbo', 'Sc03g0003290' => 'sci', 'Sc10g0010130' => 'sci', 'Sc22g0003650' => 'sci', 'Sed0001603' => 'sed', 'Sed0004259' => 'sed', 'Sed0006789' => 'sed', 'Sed0011838' => 'sed', 'Sed0012964' => 'sed', 'Sed0016383' => 'sed', 'Sed0019010' => 'sed', 'Sed0020188' => 'sed', 'SEGI_04702' => 'sgi', 'SEGI_17231' => 'sgi', 'SEGI_18877' => 'sgi', 'SEGI_25196' => 'sgi', 'SEGI_25515' => 'sgi', 'SEGI_28445' => 'sgi', 'SEGI_37452' => 'sgi', 'SGA_v2.0_scaffold188G40336' => 'sas', 'SGA_v2.0_scaffold228G43247' => 'sas', 'SGA_v2.0_scaffold280G46853' => 'sas', 'SGA_v2.0_scaffold34G13808' => 'sas', 'SGA_v2.0_scaffold40G15576' => 'sas', 'SGA_v2.0_scaffold611G53188' => 'sas', 'SGA_v2.0_scaffold78G25461' => 'sas', 'SGA_v2.0_scaffold90G27888' => 'sas', 'SHI08601' => 'shi', 'SHI08606' => 'shi', 'SHI17117' => 'shi', 'SHI17119' => 'shi', 'SMO118G0201' => 'smo', 'SMO169G0247' => 'smo', 'SMO176G0006' => 'smo', 'SMO176G0015' => 'smo', 'SMO202G0006' => 'smo', 'SMO240G0050' => 'smo', 'SMO286G0009' => 'smo', 'SMO338G0033' => 'smo', 'SMO356G0533' => 'smo', 'SMO364G0382' => 'smo', 'SMO367G0166' => 'smo', 'SMO367G1098' => 'smo', 'Solyc01g009920.3' => 'sly', 'Solyc01g099300.3' => 'sly', 'Solyc02g084700.3' => 'sly', 'Solyc03g097520.3' => 'sly', 'Solyc06g071580.3' => 'sly', 'Solyc10g081760.3' => 'sly', 'Sopen01g005480' => 'spe', 'Sopen01g042850' => 'spe', 'Sopen02g029370' => 'spe', 'Sopen03g028280' => 'spe', 'Sopen06g027870' => 'spe', 'Sopen10g032270' => 'spe', 'Sp5g18180' => 'spa', 'Sp6g12880' => 'spa', 'Sp6g30850' => 'spa', 'Sp7g22960' => 'spa', 'Sp7g34010' => 'spa', 'SpUn1326_0010' => 'spa', 'TAR371G0242' => 'tar', 'TAR622G0638' => 'tar', 'TAR628G1548' => 'tar', 'TAR629G1079' => 'tar', 'TAR629G3413' => 'tar', 'THA.LOC104804249' => 'tha', 'THA.LOC104808315' => 'tha', 'THA.LOC104809238' => 'tha', 'THA.LOC104825484' => 'tha', 'Thecc.01G025500' => 'tca', 'Thecc.03G015800' => 'tca', 'Thecc.03G018000' => 'tca', 'Thecc.03G134800' => 'tca', 'Thecc.04G014700' => 'tca', 'Thhalv10006991m.g' => 'esa', 'Thhalv10012707m.g' => 'esa', 'Thhalv10015739m.g' => 'esa', 'Thhalv10024553m.g' => 'esa', 'Thhalv10024673m.g' => 'esa', 'Thhalv10029187m.g' => 'esa', 'TPR.G12971' => 'tpr', 'TPR.G29396' => 'tpr', 'TPR.G33376' => 'tpr', 'TPR.G35508' => 'tpr', 'TPR.G35516' => 'tpr', 'TPR.G37317' => 'tpr', 'TPR.G37389' => 'tpr', 'TPR.G37523' => 'tpr', 'TPR.G559' => 'tpr', 'TWI14G0070' => 'twi', 'TWI14G0729' => 'twi', 'TWI18G0596' => 'twi', 'TWI39G0780' => 'twi', 'TWI39G0850' => 'twi', 'TWI73G1052' => 'twi', 'unitig_52.g17485' => 'ugi', 'unitig_61.g26355' => 'ugi', 'vmacro01040' => 'vma', 'vmacro16731' => 'vma', 'vmacro18270' => 'vma', 'vmacro19142' => 'vma', 'vmacro19407' => 'vma', 'vmacro19408' => 'vma', 'vmacro21899' => 'vma', 'vmacro21900' => 'vma', 'vmacro21901' => 'vma', 'VMungo0251G0490' => 'vmu', 'VMungo0251G1748' => 'vmu', 'VMungo1309G0421' => 'vmu', 'Zm00001eb086500' => 'zma', 'Zm00001eb150680' => 'zma', 'Zm00001eb162330' => 'zma', 'Zm00001eb203130' => 'zma', 'Zm00001eb369480' => 'zma', 'Zm00001eb382340' => 'zma', 'Zm00001eb416360' => 'zma' ), 'gf_id' => 'HOM05D000902', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000902' ), 'data_identifier' => 'HOM05D000902', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000902', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '663', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02470' => 'bna', 'A01p16260' => 'bna', 'A02p01680' => 'bna', 'A03p16600' => 'bna', 'A03p55660' => 'bna', 'A03p64160' => 'bna', 'A03p64170' => 'bna', 'A08p31900' => 'bna', 'A09p59530' => 'bna', 'A10p08230' => 'bna', 'A10p25090' => 'bna', 'Aa31LG3G7100' => 'aar', 'Aa31LG3G7110' => 'aar', 'Aa31LG6G13160' => 'aar', 'Aa31LG7G10770' => 'aar', 'Aa31LG7G3830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2723' => 'aag', 'Actinidia08045' => 'ach', 'Actinidia08888' => 'ach', 'Actinidia18333' => 'ach', 'Actinidia19334' => 'ach', 'Actinidia25552' => 'ach', 'Actinidia26089' => 'ach', 'Actinidia30615' => 'ach', 'Actinidia30616' => 'ach', 'Actinidia33083' => 'ach', 'Actinidia35762' => 'ach', 'Ah.02g110620' => 'amhyb', 'Ah.11g046390' => 'amhyb', 'AL1G31670' => 'aly', 'AL6G23730' => 'aly', 'AL7G14740' => 'aly', 'AL7G14750' => 'aly', 'AL7G14760' => 'aly', 'AL7G28220' => 'aly', 'AL8G24940' => 'aly', 'Aqoxy3G01665' => 'aox', 'Aqoxy3G02853' => 'aox', 'Aqoxy5G01513' => 'aox', 'Aqoxy5G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8SKA4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ75LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKDA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0LJZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7REX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZP4YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWX7I5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2QKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS0L9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPCD8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q161UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC7XCF' => 'arhy', 'AT1G19100' => 'ath', 'AT4G24970' => 'ath', 'AT4G36270' => 'ath', 'AT4G36280' => 'ath', 'AT4G36290' => 'ath', 'AT5G13130' => 'ath', 'AT5G50780' => 'ath', 'ATR0582G266' => 'atr', 'ATR0661G195' => 'atr', 'ATR1152G031' => 'atr', 'Atru.chr11.2382' => 'acertr', 'Atru.chr12.2337' => 'acertr', 'Atru.chr3.744' => 'acertr', 'Atru.chr6.1870' => 'acertr', 'Atru.chr9.2515' => 'acertr', 'AUR62004120' => 'cqu', 'AUR62005667' => 'cqu', 'AUR62007634' => 'cqu', 'AUR62008186' => 'cqu', 'AUR62008187' => 'cqu', 'AUR62008188' => 'cqu', 'AUR62027954' => 'cqu', 'AUR62028766' => 'cqu', 'AUR62028767' => 'cqu', 'AUR62028768' => 'cqu', 'AUR62028886' => 'cqu', 'AUR62029563' => 'cqu', 'AUR62038832' => 'cqu', 'BcaB01g04149' => 'bca', 'BcaB03g12940' => 'bca', 'BcaB03g13090' => 'bca', 'BcaB03g14466' => 'bca', 'BcaB05g24035' => 'bca', 'BcaC01g06050' => 'bca', 'BcaC04g19148' => 'bca', 'BcaC04g20761' => 'bca', 'BcaC06g32845' => 'bca', 'BcaC07g41274' => 'bca', 'BcaC09g50827' => 'bca', 'BcaNung00741' => 'bca', 'BcaNung00742' => 'bca', 'BcaNung01859' => 'bca', 'BcaNung03985' => 'bca', 'BcaNung03989' => 'bca', 'BcaNung05661' => 'bca', 'BolC1t00257H' => 'bol', 'BolC1t01956H' => 'bol', 'BolC2t06534H' => 'bol', 'BolC3t14334H' => 'bol', 'BolC5t30451H' => 'bol', 'BolC7t45880H' => 'bol', 'BolC7t46586H' => 'bol', 'BolC8t49301H' => 'bol', 'BolC8t51837H' => 'bol', 'BolC9t56822H' => 'bol', 'BolC9t59235H' => 'bol', 'BraA01t00234Z' => 'bra', 'BraA01t01563Z' => 'bra', 'BraA02t05147Z' => 'bra', 'BraA03t10947Z' => 'bra', 'BraA03t14633Z' => 'bra', 'BraA08t35112Z' => 'bra', 'BraA09t41330Z' => 'bra', 'BraA10t44570Z' => 'bra', 'C01p02670' => 'bna', 'C01p20260' => 'bna', 'C02p05890' => 'bna', 'C03p19530' => 'bna', 'C05p17470' => 'bna', 'C07p53900' => 'bna', 'C07p61630' => 'bna', 'C08p16800' => 'bna', 'C08p42810' => 'bna', 'C09p39480' => 'bna', 'C09p63980' => 'bna', 'CAN.G1001.7' => 'can', 'CAN.G1034.55' => 'can', 'CAN.G143.7' => 'can', 'CAN.G3340.1' => 'can', 'CAN.G358.19' => 'can', 'CAN.G373.2' => 'can', 'CAN.G674.16' => 'can', 'CAN.G674.17' => 'can', 'CAN.G674.18' => 'can', 'CAN.G732.2' => 'can', 'CAN.G732.3' => 'can', 'CAN.G993.39' => 'can', 'CANSAT01G2052' => 'cansat', 'CANSAT80G0070' => 'cansat', 'CANSAT80G0483' => 'cansat', 'CANSAT80G0625' => 'cansat', 'CARHR019690' => 'chi', 'CARHR080280' => 'chi', 'CARHR152750' => 'chi', 'CARHR152760' => 'chi', 'CARHR152770' => 'chi', 'CARHR200340' => 'chi', 'CARHR232370' => 'chi', 'CARHR244670' => 'chi', 'CARHR244680' => 'chi', 'CARHR257520' => 'chi', 'Carub.0001s1872' => 'cru', 'Carub.0006s1130' => 'cru', 'Carub.0007s0396' => 'cru', 'Carub.0007s0397' => 'cru', 'Carub.0007s1608' => 'cru', 'Carub.0008s1068' => 'cru', 'Carub.0008s1077' => 'cru', 'Ca_16158_v3' => 'car', 'Ca_17571_v3' => 'car', 'Ca_21936_v3' => 'car', 'Ca_22350_v3' => 'car', 'CBR_g22445' => 'cbr', 'CBR_g26290' => 'cbr', 'Cc04_g09610' => 'ccan', 'Cc04_g12280' => 'ccan', 'Cc07_g10230' => 'ccan', 'CDE02G0093' => 'cde', 'CDE02G0701' => 'cde', 'CDE04G1050' => 'cde', 'CDE05G1833' => 'cde', 'CDE05G3058' => 'cde', 'CDE05G3380' => 'cde', 'CDE06G0536' => 'cde', 'Cfa006923' => 'cfa', 'Cfa009402' => 'cfa', 'Cfa018751' => 'cfa', 'Cfa019164' => 'cfa', 'Cfa022935' => 'cfa', 'Ciclev10019081m.g' => 'ccl', 'Ciclev10025076m.g' => 'ccl', 'Ciclev10030712m.g' => 'ccl', 'Ciclev10033760m.g' => 'ccl', 'CiPaw.05G105600' => 'cil', 'CiPaw.08G136700' => 'cil', 'CiPaw.11G003900' => 'cil', 'CiPaw.11G023700' => 'cil', 'CiPaw.12G003700' => 'cil', 'ClCG06G017100' => 'cla', 'ClCG06G018110' => 'cla', 'ClCG07G008800' => 'cla', 'ClCG07G015330' => 'cla', 'COL.COLO4_13698' => 'col', 'COL.COLO4_16659' => 'col', 'COL.COLO4_21986' => 'col', 'COL.COLO4_24049' => 'col', 'COL.COLO4_29061' => 'col', 'COL.COLO4_29075' => 'col', 'COL.COLO4_30094' => 'col', 'Cpa.g.c33689' => 'cpa', 'Cpa.g.sc108.39' => 'cpa', 'Cpa.g.sc108.41' => 'cpa', 'Cpa.g.sc1163.1' => 'cpa', 'Cpa.g.sc4.155' => 'cpa', 'Cpa.g.sc6.194' => 'cpa', 'CsaV3_1G000340' => 'csa', 'CsaV3_1G001400' => 'csa', 'CsaV3_4G002220' => 'csa', 'CsaV3_4G005370' => 'csa', 'CSS0007487' => 'camsi', 'CSS0008066' => 'camsi', 'CSS0009120' => 'camsi', 'CSS0015512' => 'camsi', 'CSS0022409' => 'camsi', 'CSS0025358' => 'camsi', 'CSS0044547' => 'camsi', 'DCAR_013057' => 'dca', 'DCAR_015058' => 'dca', 'DCAR_016027' => 'dca', 'DCAR_017327' => 'dca', 'DCAR_020743' => 'dca', 'DCAR_026157' => 'dca', 'DCAR_032339' => 'dca', 'DCAR_032340' => 'dca', 'Dinv11200' => 'din', 'Dinv11201' => 'din', 'Dinv20631' => 'din', 'Dinv23182' => 'din', 'Dinv33466' => 'din', 'Dinv33583' => 'din', 'Dinv38565' => 'din', 'Duzib068G0200' => 'dzi', 'Duzib147G0132' => 'dzi', 'Duzib147G0635' => 'dzi', 'Duzib205G1670' => 'dzi', 'Duzib251G0606' => 'dzi', 'ECA232G3336' => 'eca', 'ECA232G3763' => 'eca', 'ECA232G4845' => 'eca', 'ECA234G1607' => 'eca', 'ECA246G0932' => 'eca', 'ECA247G0781' => 'eca', 'ECA247G1932' => 'eca', 'ECA247G2079' => 'eca', 'ECA247G3338' => 'eca', 'ECA247G4115' => 'eca', 'EL10Ac3g06552' => 'bvu', 'EL10Ac5g10721' => 'bvu', 'EL10Ac5g10722' => 'bvu', 'EL10Ac5g10723' => 'bvu', 'EL10Ac5g11361' => 'bvu', 'EL10Ac6g13553' => 'bvu', 'EL10As8g23872' => 'bvu', 'Eucgr.B00250' => 'egr', 'Eucgr.B00251' => 'egr', 'Eucgr.B03533' => 'egr', 'Eucgr.I02381' => 'egr', 'Eucgr.K02700' => 'egr', 'FAN02G0174' => 'fan', 'FAN02G3146' => 'fan', 'FAN04G1672' => 'fan', 'FAN04G2273' => 'fan', 'FAN05G2791' => 'fan', 'FAN05G4035' => 'fan', 'FAN07G0834' => 'fan', 'FAN08G1198' => 'fan', 'FAN09G4182' => 'fan', 'FAN12G0496' => 'fan', 'FAN13G1027' => 'fan', 'FAN13G2951' => 'fan', 'FAN14G0705' => 'fan', 'FAN14G0720' => 'fan', 'FAN17G0201' => 'fan', 'FAN17G2665' => 'fan', 'FAN18G1456' => 'fan', 'FAN18G1525' => 'fan', 'FAN18G3500' => 'fan', 'FAN28G2670' => 'fan', 'FvH4_1g12391' => 'fve', 'FvH4_4g23220' => 'fve', 'FvH4_5g08810' => 'fve', 'FvH4_5g28960' => 'fve', 'FvH4_6g42820' => 'fve', 'FvH4_6g51110' => 'fve', 'Glyma.02G051802' => 'gma', 'Glyma.04G185300' => 'gma', 'Glyma.05G202900' => 'gma', 'Glyma.08G010300' => 'gma', 'Glyma.16G131900' => 'gma', 'Glyma.17G087900' => 'gma', 'Gohir.A07G048600' => 'ghi', 'Gohir.A11G179000' => 'ghi', 'Gohir.A12G140900' => 'ghi', 'Gohir.A12G140950' => 'ghi', 'Gohir.A12G191700' => 'ghi', 'Gohir.A13G086300' => 'ghi', 'Gohir.D07G052900' => 'ghi', 'Gohir.D11G186600' => 'ghi', 'Gohir.D12G145575' => 'ghi', 'Gohir.D12G145650' => 'ghi', 'Gohir.D12G145725' => 'ghi', 'Gohir.D12G194050' => 'ghi', 'Gohir.D13G091800' => 'ghi', 'Gorai.001G055900' => 'gra', 'Gorai.007G198400' => 'gra', 'Gorai.008G157000' => 'gra', 'Gorai.008G157100' => 'gra', 'Gorai.008G208700' => 'gra', 'Gorai.010G138700' => 'gra', 'GSVIVG01000977001' => 'vvi', 'GSVIVG01007708001' => 'vvi', 'GSVIVG01008587001' => 'vvi', 'GSVIVG01018849001' => 'vvi', 'GSVIVG01032432001' => 'vvi', 'HanXRQChr02g0034131' => 'han', 'HanXRQChr02g0035981' => 'han', 'HanXRQChr02g0035991' => 'han', 'HanXRQChr05g0155611' => 'han', 'HanXRQChr05g0155621' => 'han', 'HanXRQChr08g0236501' => 'han', 'HanXRQChr09g0261321' => 'han', 'HanXRQChr09g0272081' => 'han', 'HanXRQChr10g0310741' => 'han', 'HanXRQChr11g0325591' => 'han', 'HanXRQChr12g0385691' => 'han', 'HanXRQChr13g0387801' => 'han', 'HanXRQChr15g0463011' => 'han', 'Haze_03826' => 'cav', 'Haze_03827' => 'cav', 'Haze_07183' => 'cav', 'Haze_07537' => 'cav', 'Haze_07539' => 'cav', 'Haze_12461' => 'cav', 'Haze_16115' => 'cav', 'Haze_16808' => 'cav', 'Haze_18531' => 'cav', 'Hma1.2p1_0046F.1_g026700' => 'hma', 'Hma1.2p1_0046F.1_g026710' => 'hma', 'Hma1.2p1_0168F.1_g074340' => 'hma', 'Hma1.2p1_0266F.1_g107030' => 'hma', 'Hma1.2p1_0266F.1_g107060' => 'hma', 'Hma1.2p1_0275F.1_g110510' => 'hma', 'Hma1.2p1_0592F.1_g185490' => 'hma', 'Hma1.2p1_0592F.1_g185500' => 'hma', 'Hma1.2p1_0592F.1_g185510' => 'hma', 'Hma1.2p1_0592F.1_g185520' => 'hma', 'Hma1.2p1_0592F.1_g185530' => 'hma', 'Hma1.2p1_0818F.1_g223450' => 'hma', 'HPP92_009708' => 'vpl', 'HPP92_009793' => 'vpl', 'HPP92_009796' => 'vpl', 'HPP92_009797' => 'vpl', 'HPP92_014940' => 'vpl', 'HPP92_014988' => 'vpl', 'Hund02463' => 'sun', 'Hund02760' => 'sun', 'Hund05071' => 'sun', 'Hund10108' => 'sun', 'Hund11204' => 'sun', 'Hund14016' => 'sun', 'Hund16464' => 'sun', 'Lalb_Chr09g0333391' => 'lal', 'Lalb_Chr11g0070461' => 'lal', 'Lalb_Chr12g0201671' => 'lal', 'Lalb_Chr13g0297161' => 'lal', 'Lj1g0002823' => 'lja', 'Lj3C1074T6' => 'lonja', 'Lj4A212T28' => 'lonja', 'Lj4g0005516' => 'lja', 'Lj4g0013705' => 'lja', 'Lj4g0027865' => 'lja', 'Lj5C92G16' => 'lonja', 'Lj5C92T12' => 'lonja', 'Lj7C596T3' => 'lonja', 'Lj9A446G59' => 'lonja', 'Lj9A482G21' => 'lonja', 'Lsat_1_v5_gn_1_28261' => 'lsa', 'Lsat_1_v5_gn_1_28281' => 'lsa', 'Lsat_1_v5_gn_1_32721' => 'lsa', 'Lsat_1_v5_gn_4_151760' => 'lsa', 'Lsat_1_v5_gn_4_2120' => 'lsa', 'Lsat_1_v5_gn_4_75761' => 'lsa', 'Lsat_1_v5_gn_5_10920' => 'lsa', 'Manes.02G099900' => 'mes', 'Manes.11G096200' => 'mes', 'Manes.12G007200' => 'mes', 'Manes.14G048300' => 'mes', 'Manes.17G114700' => 'mes', 'Mapoly0002s0070' => 'mpo', 'Mapoly0029s0099' => 'mpo', 'MBI07_g24742_MAGBIO' => 'mbi', 'MBI10_g27988_MAGBIO' => 'mbi', 'MBI11_g13057_MAGBIO' => 'mbi', 'MD02G1137200' => 'mdo', 'MD06G1137200' => 'mdo', 'MD07G1122300' => 'mdo', 'MD09G1078200' => 'mdo', 'MD13G1123700' => 'mdo', 'MD14G1151900' => 'mdo', 'MD17G1030900' => 'mdo', 'MD17G1068200' => 'mdo', 'MD17G1068600' => 'mdo', 'Medtr3g077540' => 'mtr', 'Medtr4g105530' => 'mtr', 'Medtr8g076580' => 'mtr', 'Medtr8g076590' => 'mtr', 'Medtr8g096410' => 'mtr', 'MELO3C016411.2' => 'cme', 'MELO3C017780.2' => 'cme', 'MELO3C022560.2' => 'cme', 'MELO3C026187.2' => 'cme', 'MELO3C026286.2' => 'cme', 'MELO3C032854.2' => 'cme', 'Migut.H02495' => 'egut', 'Migut.I00561' => 'egut', 'Migut.K01015' => 'egut', 'Migut.K01016' => 'egut', 'Migut.L00743' => 'egut', 'Migut.L00744' => 'egut', 'Migut.L00746' => 'egut', 'Migut.L00798' => 'egut', 'Migut.L00799' => 'egut', 'Migut.N02096' => 'egut', 'MSTRG.11259' => 'ama', 'MSTRG.23142' => 'ama', 'MSTRG.2499' => 'ama', 'Nitab4.5_0000003g0730' => 'nta', 'Nitab4.5_0000137g0020' => 'nta', 'Nitab4.5_0000721g0210' => 'nta', 'Nitab4.5_0000723g0050' => 'nta', 'Nitab4.5_0000913g0070' => 'nta', 'Nitab4.5_0001332g0040' => 'nta', 'Nitab4.5_0001771g0050' => 'nta', 'Nitab4.5_0001918g0050' => 'nta', 'Nitab4.5_0002686g0030' => 'nta', 'Nitab4.5_0003156g0020' => 'nta', 'Nitab4.5_0003383g0040' => 'nta', 'Nitab4.5_0003918g0010' => 'nta', 'Nitab4.5_0006760g0010' => 'nta', 'Nn1g05981' => 'nnu', 'Nn1g06288' => 'nnu', 'Nn3g16371' => 'nnu', 'Nn3g16786' => 'nnu', 'Nn4g22232' => 'nnu', 'Oeu005144.1' => 'oeu', 'Oeu005145.1' => 'oeu', 'Oeu011348.1' => 'oeu', 'Oeu016415.1' => 'oeu', 'Oeu023501.1' => 'oeu', 'Oeu044473.1' => 'oeu', 'Oeu048892.2' => 'oeu', 'Os01g0549200' => 'osa', 'Os02g0469300' => 'osa', 'Os04g0311100' => 'osa', 'Os06g0474900' => 'osa', 'Os10g0181700' => 'osa', 'Os11g0454800' => 'osa', 'Peaxi162Scf00037g00714' => 'pax', 'Peaxi162Scf00084g01217' => 'pax', 'Peaxi162Scf00257g00217' => 'pax', 'Peaxi162Scf00516g00215' => 'pax', 'Peaxi162Scf00689g00123' => 'pax', 'PGR044G2719' => 'pgr', 'PGR083G1360' => 'pgr', 'PGR102G2849' => 'pgr', 'PGR119G2534' => 'pgr', 'PGSC0003DMG400003538' => 'stu', 'PGSC0003DMG400028138' => 'stu', 'PGSC0003DMG400031732' => 'stu', 'PGSC0003DMG400038165' => 'stu', 'Phvul.002G284600' => 'pvu', 'Phvul.003G258200' => 'pvu', 'Phvul.009G176500' => 'pvu', 'Potri.003G167201' => 'ptr', 'Potri.005G118400' => 'ptr', 'Potri.012G089000' => 'ptr', 'Potri.012G102800' => 'ptr', 'Potri.015G079400' => 'ptr', 'Potri.015G100900' => 'ptr', 'Pp3c14_9810' => 'ppa', 'Pp3c15_10450' => 'ppa', 'Pp3c20_19150' => 'ppa', 'Pp3c23_12740' => 'ppa', 'Pp3c23_6310' => 'ppa', 'Pp3c24_3720' => 'ppa', 'Pp3c27_2580' => 'ppa', 'Pp3c9_8990' => 'ppa', 'PRCOL_00002854' => 'pco', 'Prupe.1G221200' => 'ppe', 'Prupe.3G289000' => 'ppe', 'Prupe.5G147000' => 'ppe', 'Prupe.6G157300' => 'ppe', 'Prupe.7G163400' => 'ppe', 'Psat0s2177g0040' => 'psa', 'Psat3g174760' => 'psa', 'Psat3g192160' => 'psa', 'Psat4g058520' => 'psa', 'Psat4g096840' => 'psa', 'Psat7g037320' => 'psa', 'PSO017G1274' => 'pso', 'PSO017G5166' => 'pso', 'PSO063G4558' => 'pso', 'PSO170G4458' => 'pso', 'PSO170G5005' => 'pso', 'PSO210G6156' => 'pso', 'PSO210G6635' => 'pso', 'PSO210G7397' => 'pso', 'PSO210G7700' => 'pso', 'PSO455G0035' => 'pso', 'PSO455G0180' => 'pso', 'PSO478G4515' => 'pso', 'PSO832G1305' => 'pso', 'PSO832G3489' => 'pso', 'QL02p075247' => 'qlo', 'QL03p051148' => 'qlo', 'QL05p010313' => 'qlo', 'QL06p034627' => 'qlo', 'QL10p001889' => 'qlo', 'QL10p010846' => 'qlo', 'RcHm_v2.0_Chr1g0350621' => 'rch', 'RcHm_v2.0_Chr1g0350641' => 'rch', 'RcHm_v2.0_Chr2g0092891' => 'rch', 'RcHm_v2.0_Chr2g0100251' => 'rch', 'RcHm_v2.0_Chr2g0158661' => 'rch', 'RcHm_v2.0_Chr2g0172741' => 'rch', 'RcHm_v2.0_Chr4g0429571' => 'rch', 'RcHm_v2.0_Chr5g0042471' => 'rch', 'RcHm_v2.0_Chr7g0189451' => 'rch', 'Rhsim08G0052000' => 'rsi', 'Rhsim08G0174400' => 'rsi', 'Rhsim08G0193200' => 'rsi', 'Rhsim10G0214800' => 'rsi', 'Rhsim10G0214900' => 'rsi', 'Rhsim10G0215000' => 'rsi', 'Rhsim12G0022900' => 'rsi', 'Rhsim12G0177500' => 'rsi', 'Rhsim12G0177700' => 'rsi', 'Sabra03G0122600' => 'sbr', 'Sabra05G0097400' => 'sbr', 'Sabra12G0064100' => 'sbr', 'Sabra15G0121300' => 'sbr', 'SalBow2G0642' => 'sbo', 'SalBow5G2667' => 'sbo', 'SalBow5G4873' => 'sbo', 'SalBow8G2395' => 'sbo', 'Sc03g0003290' => 'sci', 'Sc10g0010130' => 'sci', 'Sc22g0003650' => 'sci', 'Sed0001603' => 'sed', 'Sed0004259' => 'sed', 'Sed0006789' => 'sed', 'Sed0011838' => 'sed', 'Sed0012964' => 'sed', 'Sed0016383' => 'sed', 'Sed0019010' => 'sed', 'Sed0020188' => 'sed', 'SEGI_04702' => 'sgi', 'SEGI_17231' => 'sgi', 'SEGI_18877' => 'sgi', 'SEGI_25196' => 'sgi', 'SEGI_25515' => 'sgi', 'SEGI_28445' => 'sgi', 'SEGI_37452' => 'sgi', 'SGA_v2.0_scaffold188G40336' => 'sas', 'SGA_v2.0_scaffold228G43247' => 'sas', 'SGA_v2.0_scaffold280G46853' => 'sas', 'SGA_v2.0_scaffold34G13808' => 'sas', 'SGA_v2.0_scaffold40G15576' => 'sas', 'SGA_v2.0_scaffold611G53188' => 'sas', 'SGA_v2.0_scaffold78G25461' => 'sas', 'SGA_v2.0_scaffold90G27888' => 'sas', 'SHI08601' => 'shi', 'SHI08606' => 'shi', 'SHI17117' => 'shi', 'SHI17119' => 'shi', 'SMO118G0201' => 'smo', 'SMO169G0247' => 'smo', 'SMO176G0006' => 'smo', 'SMO176G0015' => 'smo', 'SMO202G0006' => 'smo', 'SMO240G0050' => 'smo', 'SMO286G0009' => 'smo', 'SMO338G0033' => 'smo', 'SMO356G0533' => 'smo', 'SMO364G0382' => 'smo', 'SMO367G0166' => 'smo', 'SMO367G1098' => 'smo', 'Solyc01g009920.3' => 'sly', 'Solyc01g099300.3' => 'sly', 'Solyc02g084700.3' => 'sly', 'Solyc03g097520.3' => 'sly', 'Solyc06g071580.3' => 'sly', 'Solyc10g081760.3' => 'sly', 'Sopen01g005480' => 'spe', 'Sopen01g042850' => 'spe', 'Sopen02g029370' => 'spe', 'Sopen03g028280' => 'spe', 'Sopen06g027870' => 'spe', 'Sopen10g032270' => 'spe', 'Sp5g18180' => 'spa', 'Sp6g12880' => 'spa', 'Sp6g30850' => 'spa', 'Sp7g22960' => 'spa', 'Sp7g34010' => 'spa', 'SpUn1326_0010' => 'spa', 'TAR371G0242' => 'tar', 'TAR622G0638' => 'tar', 'TAR628G1548' => 'tar', 'TAR629G1079' => 'tar', 'TAR629G3413' => 'tar', 'THA.LOC104804249' => 'tha', 'THA.LOC104808315' => 'tha', 'THA.LOC104809238' => 'tha', 'THA.LOC104825484' => 'tha', 'Thecc.01G025500' => 'tca', 'Thecc.03G015800' => 'tca', 'Thecc.03G018000' => 'tca', 'Thecc.03G134800' => 'tca', 'Thecc.04G014700' => 'tca', 'Thhalv10006991m.g' => 'esa', 'Thhalv10012707m.g' => 'esa', 'Thhalv10015739m.g' => 'esa', 'Thhalv10024553m.g' => 'esa', 'Thhalv10024673m.g' => 'esa', 'Thhalv10029187m.g' => 'esa', 'TPR.G12971' => 'tpr', 'TPR.G29396' => 'tpr', 'TPR.G33376' => 'tpr', 'TPR.G35508' => 'tpr', 'TPR.G35516' => 'tpr', 'TPR.G37317' => 'tpr', 'TPR.G37389' => 'tpr', 'TPR.G37523' => 'tpr', 'TPR.G559' => 'tpr', 'TWI14G0070' => 'twi', 'TWI14G0729' => 'twi', 'TWI18G0596' => 'twi', 'TWI39G0780' => 'twi', 'TWI39G0850' => 'twi', 'TWI73G1052' => 'twi', 'unitig_52.g17485' => 'ugi', 'unitig_61.g26355' => 'ugi', 'vmacro01040' => 'vma', 'vmacro16731' => 'vma', 'vmacro18270' => 'vma', 'vmacro19142' => 'vma', 'vmacro19407' => 'vma', 'vmacro19408' => 'vma', 'vmacro21899' => 'vma', 'vmacro21900' => 'vma', 'vmacro21901' => 'vma', 'VMungo0251G0490' => 'vmu', 'VMungo0251G1748' => 'vmu', 'VMungo1309G0421' => 'vmu', 'Zm00001eb086500' => 'zma', 'Zm00001eb150680' => 'zma', 'Zm00001eb162330' => 'zma', 'Zm00001eb203130' => 'zma', 'Zm00001eb369480' => 'zma', 'Zm00001eb382340' => 'zma', 'Zm00001eb416360' => 'zma' ) $gf_id = 'HOM05D000902' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000902' ) $data_identifier = 'HOM05D000902' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 13, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 10, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 6, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 9, 'hma' => (int) 12, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 4, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 6, 'ppa' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 6, 'rch' => (int) 9, 'rsi' => (int) 9, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 12, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 3, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416360' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000902', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '663', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02470' => 'bna', 'A01p16260' => 'bna', 'A02p01680' => 'bna', 'A03p16600' => 'bna', 'A03p55660' => 'bna', 'A03p64160' => 'bna', 'A03p64170' => 'bna', 'A08p31900' => 'bna', 'A09p59530' => 'bna', 'A10p08230' => 'bna', 'A10p25090' => 'bna', 'Aa31LG3G7100' => 'aar', 'Aa31LG3G7110' => 'aar', 'Aa31LG6G13160' => 'aar', 'Aa31LG7G10770' => 'aar', 'Aa31LG7G3830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2723' => 'aag', 'Actinidia08045' => 'ach', 'Actinidia08888' => 'ach', 'Actinidia18333' => 'ach', 'Actinidia19334' => 'ach', 'Actinidia25552' => 'ach', 'Actinidia26089' => 'ach', 'Actinidia30615' => 'ach', 'Actinidia30616' => 'ach', 'Actinidia33083' => 'ach', 'Actinidia35762' => 'ach', 'Ah.02g110620' => 'amhyb', 'Ah.11g046390' => 'amhyb', 'AL1G31670' => 'aly', 'AL6G23730' => 'aly', 'AL7G14740' => 'aly', 'AL7G14750' => 'aly', 'AL7G14760' => 'aly', 'AL7G28220' => 'aly', 'AL8G24940' => 'aly', 'Aqoxy3G01665' => 'aox', 'Aqoxy3G02853' => 'aox', 'Aqoxy5G01513' => 'aox', 'Aqoxy5G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8SKA4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ75LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKDA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0LJZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7REX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZP4YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWX7I5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2QKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS0L9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPCD8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q161UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC7XCF' => 'arhy', 'AT1G19100' => 'ath', 'AT4G24970' => 'ath', 'AT4G36270' => 'ath', 'AT4G36280' => 'ath', 'AT4G36290' => 'ath', 'AT5G13130' => 'ath', 'AT5G50780' => 'ath', 'ATR0582G266' => 'atr', 'ATR0661G195' => 'atr', 'ATR1152G031' => 'atr', 'Atru.chr11.2382' => 'acertr', 'Atru.chr12.2337' => 'acertr', 'Atru.chr3.744' => 'acertr', 'Atru.chr6.1870' => 'acertr', 'Atru.chr9.2515' => 'acertr', 'AUR62004120' => 'cqu', 'AUR62005667' => 'cqu', 'AUR62007634' => 'cqu', 'AUR62008186' => 'cqu', 'AUR62008187' => 'cqu', 'AUR62008188' => 'cqu', 'AUR62027954' => 'cqu', 'AUR62028766' => 'cqu', 'AUR62028767' => 'cqu', 'AUR62028768' => 'cqu', 'AUR62028886' => 'cqu', 'AUR62029563' => 'cqu', 'AUR62038832' => 'cqu', 'BcaB01g04149' => 'bca', 'BcaB03g12940' => 'bca', 'BcaB03g13090' => 'bca', 'BcaB03g14466' => 'bca', 'BcaB05g24035' => 'bca', 'BcaC01g06050' => 'bca', 'BcaC04g19148' => 'bca', 'BcaC04g20761' => 'bca', 'BcaC06g32845' => 'bca', 'BcaC07g41274' => 'bca', 'BcaC09g50827' => 'bca', 'BcaNung00741' => 'bca', 'BcaNung00742' => 'bca', 'BcaNung01859' => 'bca', 'BcaNung03985' => 'bca', 'BcaNung03989' => 'bca', 'BcaNung05661' => 'bca', 'BolC1t00257H' => 'bol', 'BolC1t01956H' => 'bol', 'BolC2t06534H' => 'bol', 'BolC3t14334H' => 'bol', 'BolC5t30451H' => 'bol', 'BolC7t45880H' => 'bol', 'BolC7t46586H' => 'bol', 'BolC8t49301H' => 'bol', 'BolC8t51837H' => 'bol', 'BolC9t56822H' => 'bol', 'BolC9t59235H' => 'bol', 'BraA01t00234Z' => 'bra', 'BraA01t01563Z' => 'bra', 'BraA02t05147Z' => 'bra', 'BraA03t10947Z' => 'bra', 'BraA03t14633Z' => 'bra', 'BraA08t35112Z' => 'bra', 'BraA09t41330Z' => 'bra', 'BraA10t44570Z' => 'bra', 'C01p02670' => 'bna', 'C01p20260' => 'bna', 'C02p05890' => 'bna', 'C03p19530' => 'bna', 'C05p17470' => 'bna', 'C07p53900' => 'bna', 'C07p61630' => 'bna', 'C08p16800' => 'bna', 'C08p42810' => 'bna', 'C09p39480' => 'bna', 'C09p63980' => 'bna', 'CAN.G1001.7' => 'can', 'CAN.G1034.55' => 'can', 'CAN.G143.7' => 'can', 'CAN.G3340.1' => 'can', 'CAN.G358.19' => 'can', 'CAN.G373.2' => 'can', 'CAN.G674.16' => 'can', 'CAN.G674.17' => 'can', 'CAN.G674.18' => 'can', 'CAN.G732.2' => 'can', 'CAN.G732.3' => 'can', 'CAN.G993.39' => 'can', 'CANSAT01G2052' => 'cansat', 'CANSAT80G0070' => 'cansat', 'CANSAT80G0483' => 'cansat', 'CANSAT80G0625' => 'cansat', 'CARHR019690' => 'chi', 'CARHR080280' => 'chi', 'CARHR152750' => 'chi', 'CARHR152760' => 'chi', 'CARHR152770' => 'chi', 'CARHR200340' => 'chi', 'CARHR232370' => 'chi', 'CARHR244670' => 'chi', 'CARHR244680' => 'chi', 'CARHR257520' => 'chi', 'Carub.0001s1872' => 'cru', 'Carub.0006s1130' => 'cru', 'Carub.0007s0396' => 'cru', 'Carub.0007s0397' => 'cru', 'Carub.0007s1608' => 'cru', 'Carub.0008s1068' => 'cru', 'Carub.0008s1077' => 'cru', 'Ca_16158_v3' => 'car', 'Ca_17571_v3' => 'car', 'Ca_21936_v3' => 'car', 'Ca_22350_v3' => 'car', 'CBR_g22445' => 'cbr', 'CBR_g26290' => 'cbr', 'Cc04_g09610' => 'ccan', 'Cc04_g12280' => 'ccan', 'Cc07_g10230' => 'ccan', 'CDE02G0093' => 'cde', 'CDE02G0701' => 'cde', 'CDE04G1050' => 'cde', 'CDE05G1833' => 'cde', 'CDE05G3058' => 'cde', 'CDE05G3380' => 'cde', 'CDE06G0536' => 'cde', 'Cfa006923' => 'cfa', 'Cfa009402' => 'cfa', 'Cfa018751' => 'cfa', 'Cfa019164' => 'cfa', 'Cfa022935' => 'cfa', 'Ciclev10019081m.g' => 'ccl', 'Ciclev10025076m.g' => 'ccl', 'Ciclev10030712m.g' => 'ccl', 'Ciclev10033760m.g' => 'ccl', 'CiPaw.05G105600' => 'cil', 'CiPaw.08G136700' => 'cil', 'CiPaw.11G003900' => 'cil', 'CiPaw.11G023700' => 'cil', 'CiPaw.12G003700' => 'cil', 'ClCG06G017100' => 'cla', 'ClCG06G018110' => 'cla', 'ClCG07G008800' => 'cla', 'ClCG07G015330' => 'cla', 'COL.COLO4_13698' => 'col', 'COL.COLO4_16659' => 'col', 'COL.COLO4_21986' => 'col', 'COL.COLO4_24049' => 'col', 'COL.COLO4_29061' => 'col', 'COL.COLO4_29075' => 'col', 'COL.COLO4_30094' => 'col', 'Cpa.g.c33689' => 'cpa', 'Cpa.g.sc108.39' => 'cpa', 'Cpa.g.sc108.41' => 'cpa', 'Cpa.g.sc1163.1' => 'cpa', 'Cpa.g.sc4.155' => 'cpa', 'Cpa.g.sc6.194' => 'cpa', 'CsaV3_1G000340' => 'csa', 'CsaV3_1G001400' => 'csa', 'CsaV3_4G002220' => 'csa', 'CsaV3_4G005370' => 'csa', 'CSS0007487' => 'camsi', 'CSS0008066' => 'camsi', 'CSS0009120' => 'camsi', 'CSS0015512' => 'camsi', 'CSS0022409' => 'camsi', 'CSS0025358' => 'camsi', 'CSS0044547' => 'camsi', 'DCAR_013057' => 'dca', 'DCAR_015058' => 'dca', 'DCAR_016027' => 'dca', 'DCAR_017327' => 'dca', 'DCAR_020743' => 'dca', 'DCAR_026157' => 'dca', 'DCAR_032339' => 'dca', 'DCAR_032340' => 'dca', 'Dinv11200' => 'din', 'Dinv11201' => 'din', 'Dinv20631' => 'din', 'Dinv23182' => 'din', 'Dinv33466' => 'din', 'Dinv33583' => 'din', 'Dinv38565' => 'din', 'Duzib068G0200' => 'dzi', 'Duzib147G0132' => 'dzi', 'Duzib147G0635' => 'dzi', 'Duzib205G1670' => 'dzi', 'Duzib251G0606' => 'dzi', 'ECA232G3336' => 'eca', 'ECA232G3763' => 'eca', 'ECA232G4845' => 'eca', 'ECA234G1607' => 'eca', 'ECA246G0932' => 'eca', 'ECA247G0781' => 'eca', 'ECA247G1932' => 'eca', 'ECA247G2079' => 'eca', 'ECA247G3338' => 'eca', 'ECA247G4115' => 'eca', 'EL10Ac3g06552' => 'bvu', 'EL10Ac5g10721' => 'bvu', 'EL10Ac5g10722' => 'bvu', 'EL10Ac5g10723' => 'bvu', 'EL10Ac5g11361' => 'bvu', 'EL10Ac6g13553' => 'bvu', 'EL10As8g23872' => 'bvu', 'Eucgr.B00250' => 'egr', 'Eucgr.B00251' => 'egr', 'Eucgr.B03533' => 'egr', 'Eucgr.I02381' => 'egr', 'Eucgr.K02700' => 'egr', 'FAN02G0174' => 'fan', 'FAN02G3146' => 'fan', 'FAN04G1672' => 'fan', 'FAN04G2273' => 'fan', 'FAN05G2791' => 'fan', 'FAN05G4035' => 'fan', 'FAN07G0834' => 'fan', 'FAN08G1198' => 'fan', 'FAN09G4182' => 'fan', 'FAN12G0496' => 'fan', 'FAN13G1027' => 'fan', 'FAN13G2951' => 'fan', 'FAN14G0705' => 'fan', 'FAN14G0720' => 'fan', 'FAN17G0201' => 'fan', 'FAN17G2665' => 'fan', 'FAN18G1456' => 'fan', 'FAN18G1525' => 'fan', 'FAN18G3500' => 'fan', 'FAN28G2670' => 'fan', 'FvH4_1g12391' => 'fve', 'FvH4_4g23220' => 'fve', 'FvH4_5g08810' => 'fve', 'FvH4_5g28960' => 'fve', 'FvH4_6g42820' => 'fve', 'FvH4_6g51110' => 'fve', 'Glyma.02G051802' => 'gma', 'Glyma.04G185300' => 'gma', 'Glyma.05G202900' => 'gma', 'Glyma.08G010300' => 'gma', 'Glyma.16G131900' => 'gma', 'Glyma.17G087900' => 'gma', 'Gohir.A07G048600' => 'ghi', 'Gohir.A11G179000' => 'ghi', 'Gohir.A12G140900' => 'ghi', 'Gohir.A12G140950' => 'ghi', 'Gohir.A12G191700' => 'ghi', 'Gohir.A13G086300' => 'ghi', 'Gohir.D07G052900' => 'ghi', 'Gohir.D11G186600' => 'ghi', 'Gohir.D12G145575' => 'ghi', 'Gohir.D12G145650' => 'ghi', 'Gohir.D12G145725' => 'ghi', 'Gohir.D12G194050' => 'ghi', 'Gohir.D13G091800' => 'ghi', 'Gorai.001G055900' => 'gra', 'Gorai.007G198400' => 'gra', 'Gorai.008G157000' => 'gra', 'Gorai.008G157100' => 'gra', 'Gorai.008G208700' => 'gra', 'Gorai.010G138700' => 'gra', 'GSVIVG01000977001' => 'vvi', 'GSVIVG01007708001' => 'vvi', 'GSVIVG01008587001' => 'vvi', 'GSVIVG01018849001' => 'vvi', 'GSVIVG01032432001' => 'vvi', 'HanXRQChr02g0034131' => 'han', 'HanXRQChr02g0035981' => 'han', 'HanXRQChr02g0035991' => 'han', 'HanXRQChr05g0155611' => 'han', 'HanXRQChr05g0155621' => 'han', 'HanXRQChr08g0236501' => 'han', 'HanXRQChr09g0261321' => 'han', 'HanXRQChr09g0272081' => 'han', 'HanXRQChr10g0310741' => 'han', 'HanXRQChr11g0325591' => 'han', 'HanXRQChr12g0385691' => 'han', 'HanXRQChr13g0387801' => 'han', 'HanXRQChr15g0463011' => 'han', 'Haze_03826' => 'cav', 'Haze_03827' => 'cav', 'Haze_07183' => 'cav', 'Haze_07537' => 'cav', 'Haze_07539' => 'cav', 'Haze_12461' => 'cav', 'Haze_16115' => 'cav', 'Haze_16808' => 'cav', 'Haze_18531' => 'cav', 'Hma1.2p1_0046F.1_g026700' => 'hma', 'Hma1.2p1_0046F.1_g026710' => 'hma', 'Hma1.2p1_0168F.1_g074340' => 'hma', 'Hma1.2p1_0266F.1_g107030' => 'hma', 'Hma1.2p1_0266F.1_g107060' => 'hma', 'Hma1.2p1_0275F.1_g110510' => 'hma', 'Hma1.2p1_0592F.1_g185490' => 'hma', 'Hma1.2p1_0592F.1_g185500' => 'hma', 'Hma1.2p1_0592F.1_g185510' => 'hma', 'Hma1.2p1_0592F.1_g185520' => 'hma', 'Hma1.2p1_0592F.1_g185530' => 'hma', 'Hma1.2p1_0818F.1_g223450' => 'hma', 'HPP92_009708' => 'vpl', 'HPP92_009793' => 'vpl', 'HPP92_009796' => 'vpl', 'HPP92_009797' => 'vpl', 'HPP92_014940' => 'vpl', 'HPP92_014988' => 'vpl', 'Hund02463' => 'sun', 'Hund02760' => 'sun', 'Hund05071' => 'sun', 'Hund10108' => 'sun', 'Hund11204' => 'sun', 'Hund14016' => 'sun', 'Hund16464' => 'sun', 'Lalb_Chr09g0333391' => 'lal', 'Lalb_Chr11g0070461' => 'lal', 'Lalb_Chr12g0201671' => 'lal', 'Lalb_Chr13g0297161' => 'lal', 'Lj1g0002823' => 'lja', 'Lj3C1074T6' => 'lonja', 'Lj4A212T28' => 'lonja', 'Lj4g0005516' => 'lja', 'Lj4g0013705' => 'lja', 'Lj4g0027865' => 'lja', 'Lj5C92G16' => 'lonja', 'Lj5C92T12' => 'lonja', 'Lj7C596T3' => 'lonja', 'Lj9A446G59' => 'lonja', 'Lj9A482G21' => 'lonja', 'Lsat_1_v5_gn_1_28261' => 'lsa', 'Lsat_1_v5_gn_1_28281' => 'lsa', 'Lsat_1_v5_gn_1_32721' => 'lsa', 'Lsat_1_v5_gn_4_151760' => 'lsa', 'Lsat_1_v5_gn_4_2120' => 'lsa', 'Lsat_1_v5_gn_4_75761' => 'lsa', 'Lsat_1_v5_gn_5_10920' => 'lsa', 'Manes.02G099900' => 'mes', 'Manes.11G096200' => 'mes', 'Manes.12G007200' => 'mes', 'Manes.14G048300' => 'mes', 'Manes.17G114700' => 'mes', 'Mapoly0002s0070' => 'mpo', 'Mapoly0029s0099' => 'mpo', 'MBI07_g24742_MAGBIO' => 'mbi', 'MBI10_g27988_MAGBIO' => 'mbi', 'MBI11_g13057_MAGBIO' => 'mbi', 'MD02G1137200' => 'mdo', 'MD06G1137200' => 'mdo', 'MD07G1122300' => 'mdo', 'MD09G1078200' => 'mdo', 'MD13G1123700' => 'mdo', 'MD14G1151900' => 'mdo', 'MD17G1030900' => 'mdo', 'MD17G1068200' => 'mdo', 'MD17G1068600' => 'mdo', 'Medtr3g077540' => 'mtr', 'Medtr4g105530' => 'mtr', 'Medtr8g076580' => 'mtr', 'Medtr8g076590' => 'mtr', 'Medtr8g096410' => 'mtr', 'MELO3C016411.2' => 'cme', 'MELO3C017780.2' => 'cme', 'MELO3C022560.2' => 'cme', 'MELO3C026187.2' => 'cme', 'MELO3C026286.2' => 'cme', 'MELO3C032854.2' => 'cme', 'Migut.H02495' => 'egut', 'Migut.I00561' => 'egut', 'Migut.K01015' => 'egut', 'Migut.K01016' => 'egut', 'Migut.L00743' => 'egut', 'Migut.L00744' => 'egut', 'Migut.L00746' => 'egut', 'Migut.L00798' => 'egut', 'Migut.L00799' => 'egut', 'Migut.N02096' => 'egut', 'MSTRG.11259' => 'ama', 'MSTRG.23142' => 'ama', 'MSTRG.2499' => 'ama', 'Nitab4.5_0000003g0730' => 'nta', 'Nitab4.5_0000137g0020' => 'nta', 'Nitab4.5_0000721g0210' => 'nta', 'Nitab4.5_0000723g0050' => 'nta', 'Nitab4.5_0000913g0070' => 'nta', 'Nitab4.5_0001332g0040' => 'nta', 'Nitab4.5_0001771g0050' => 'nta', 'Nitab4.5_0001918g0050' => 'nta', 'Nitab4.5_0002686g0030' => 'nta', 'Nitab4.5_0003156g0020' => 'nta', 'Nitab4.5_0003383g0040' => 'nta', 'Nitab4.5_0003918g0010' => 'nta', 'Nitab4.5_0006760g0010' => 'nta', 'Nn1g05981' => 'nnu', 'Nn1g06288' => 'nnu', 'Nn3g16371' => 'nnu', 'Nn3g16786' => 'nnu', 'Nn4g22232' => 'nnu', 'Oeu005144.1' => 'oeu', 'Oeu005145.1' => 'oeu', 'Oeu011348.1' => 'oeu', 'Oeu016415.1' => 'oeu', 'Oeu023501.1' => 'oeu', 'Oeu044473.1' => 'oeu', 'Oeu048892.2' => 'oeu', 'Os01g0549200' => 'osa', 'Os02g0469300' => 'osa', 'Os04g0311100' => 'osa', 'Os06g0474900' => 'osa', 'Os10g0181700' => 'osa', 'Os11g0454800' => 'osa', 'Peaxi162Scf00037g00714' => 'pax', 'Peaxi162Scf00084g01217' => 'pax', 'Peaxi162Scf00257g00217' => 'pax', 'Peaxi162Scf00516g00215' => 'pax', 'Peaxi162Scf00689g00123' => 'pax', 'PGR044G2719' => 'pgr', 'PGR083G1360' => 'pgr', 'PGR102G2849' => 'pgr', 'PGR119G2534' => 'pgr', 'PGSC0003DMG400003538' => 'stu', 'PGSC0003DMG400028138' => 'stu', 'PGSC0003DMG400031732' => 'stu', 'PGSC0003DMG400038165' => 'stu', 'Phvul.002G284600' => 'pvu', 'Phvul.003G258200' => 'pvu', 'Phvul.009G176500' => 'pvu', 'Potri.003G167201' => 'ptr', 'Potri.005G118400' => 'ptr', 'Potri.012G089000' => 'ptr', 'Potri.012G102800' => 'ptr', 'Potri.015G079400' => 'ptr', 'Potri.015G100900' => 'ptr', 'Pp3c14_9810' => 'ppa', 'Pp3c15_10450' => 'ppa', 'Pp3c20_19150' => 'ppa', 'Pp3c23_12740' => 'ppa', 'Pp3c23_6310' => 'ppa', 'Pp3c24_3720' => 'ppa', 'Pp3c27_2580' => 'ppa', 'Pp3c9_8990' => 'ppa', 'PRCOL_00002854' => 'pco', 'Prupe.1G221200' => 'ppe', 'Prupe.3G289000' => 'ppe', 'Prupe.5G147000' => 'ppe', 'Prupe.6G157300' => 'ppe', 'Prupe.7G163400' => 'ppe', 'Psat0s2177g0040' => 'psa', 'Psat3g174760' => 'psa', 'Psat3g192160' => 'psa', 'Psat4g058520' => 'psa', 'Psat4g096840' => 'psa', 'Psat7g037320' => 'psa', 'PSO017G1274' => 'pso', 'PSO017G5166' => 'pso', 'PSO063G4558' => 'pso', 'PSO170G4458' => 'pso', 'PSO170G5005' => 'pso', 'PSO210G6156' => 'pso', 'PSO210G6635' => 'pso', 'PSO210G7397' => 'pso', 'PSO210G7700' => 'pso', 'PSO455G0035' => 'pso', 'PSO455G0180' => 'pso', 'PSO478G4515' => 'pso', 'PSO832G1305' => 'pso', 'PSO832G3489' => 'pso', 'QL02p075247' => 'qlo', 'QL03p051148' => 'qlo', 'QL05p010313' => 'qlo', 'QL06p034627' => 'qlo', 'QL10p001889' => 'qlo', 'QL10p010846' => 'qlo', 'RcHm_v2.0_Chr1g0350621' => 'rch', 'RcHm_v2.0_Chr1g0350641' => 'rch', 'RcHm_v2.0_Chr2g0092891' => 'rch', 'RcHm_v2.0_Chr2g0100251' => 'rch', 'RcHm_v2.0_Chr2g0158661' => 'rch', 'RcHm_v2.0_Chr2g0172741' => 'rch', 'RcHm_v2.0_Chr4g0429571' => 'rch', 'RcHm_v2.0_Chr5g0042471' => 'rch', 'RcHm_v2.0_Chr7g0189451' => 'rch', 'Rhsim08G0052000' => 'rsi', 'Rhsim08G0174400' => 'rsi', 'Rhsim08G0193200' => 'rsi', 'Rhsim10G0214800' => 'rsi', 'Rhsim10G0214900' => 'rsi', 'Rhsim10G0215000' => 'rsi', 'Rhsim12G0022900' => 'rsi', 'Rhsim12G0177500' => 'rsi', 'Rhsim12G0177700' => 'rsi', 'Sabra03G0122600' => 'sbr', 'Sabra05G0097400' => 'sbr', 'Sabra12G0064100' => 'sbr', 'Sabra15G0121300' => 'sbr', 'SalBow2G0642' => 'sbo', 'SalBow5G2667' => 'sbo', 'SalBow5G4873' => 'sbo', 'SalBow8G2395' => 'sbo', 'Sc03g0003290' => 'sci', 'Sc10g0010130' => 'sci', 'Sc22g0003650' => 'sci', 'Sed0001603' => 'sed', 'Sed0004259' => 'sed', 'Sed0006789' => 'sed', 'Sed0011838' => 'sed', 'Sed0012964' => 'sed', 'Sed0016383' => 'sed', 'Sed0019010' => 'sed', 'Sed0020188' => 'sed', 'SEGI_04702' => 'sgi', 'SEGI_17231' => 'sgi', 'SEGI_18877' => 'sgi', 'SEGI_25196' => 'sgi', 'SEGI_25515' => 'sgi', 'SEGI_28445' => 'sgi', 'SEGI_37452' => 'sgi', 'SGA_v2.0_scaffold188G40336' => 'sas', 'SGA_v2.0_scaffold228G43247' => 'sas', 'SGA_v2.0_scaffold280G46853' => 'sas', 'SGA_v2.0_scaffold34G13808' => 'sas', 'SGA_v2.0_scaffold40G15576' => 'sas', 'SGA_v2.0_scaffold611G53188' => 'sas', 'SGA_v2.0_scaffold78G25461' => 'sas', 'SGA_v2.0_scaffold90G27888' => 'sas', 'SHI08601' => 'shi', 'SHI08606' => 'shi', 'SHI17117' => 'shi', 'SHI17119' => 'shi', 'SMO118G0201' => 'smo', 'SMO169G0247' => 'smo', 'SMO176G0006' => 'smo', 'SMO176G0015' => 'smo', 'SMO202G0006' => 'smo', 'SMO240G0050' => 'smo', 'SMO286G0009' => 'smo', 'SMO338G0033' => 'smo', 'SMO356G0533' => 'smo', 'SMO364G0382' => 'smo', 'SMO367G0166' => 'smo', 'SMO367G1098' => 'smo', 'Solyc01g009920.3' => 'sly', 'Solyc01g099300.3' => 'sly', 'Solyc02g084700.3' => 'sly', 'Solyc03g097520.3' => 'sly', 'Solyc06g071580.3' => 'sly', 'Solyc10g081760.3' => 'sly', 'Sopen01g005480' => 'spe', 'Sopen01g042850' => 'spe', 'Sopen02g029370' => 'spe', 'Sopen03g028280' => 'spe', 'Sopen06g027870' => 'spe', 'Sopen10g032270' => 'spe', 'Sp5g18180' => 'spa', 'Sp6g12880' => 'spa', 'Sp6g30850' => 'spa', 'Sp7g22960' => 'spa', 'Sp7g34010' => 'spa', 'SpUn1326_0010' => 'spa', 'TAR371G0242' => 'tar', 'TAR622G0638' => 'tar', 'TAR628G1548' => 'tar', 'TAR629G1079' => 'tar', 'TAR629G3413' => 'tar', 'THA.LOC104804249' => 'tha', 'THA.LOC104808315' => 'tha', 'THA.LOC104809238' => 'tha', 'THA.LOC104825484' => 'tha', 'Thecc.01G025500' => 'tca', 'Thecc.03G015800' => 'tca', 'Thecc.03G018000' => 'tca', 'Thecc.03G134800' => 'tca', 'Thecc.04G014700' => 'tca', 'Thhalv10006991m.g' => 'esa', 'Thhalv10012707m.g' => 'esa', 'Thhalv10015739m.g' => 'esa', 'Thhalv10024553m.g' => 'esa', 'Thhalv10024673m.g' => 'esa', 'Thhalv10029187m.g' => 'esa', 'TPR.G12971' => 'tpr', 'TPR.G29396' => 'tpr', 'TPR.G33376' => 'tpr', 'TPR.G35508' => 'tpr', 'TPR.G35516' => 'tpr', 'TPR.G37317' => 'tpr', 'TPR.G37389' => 'tpr', 'TPR.G37523' => 'tpr', 'TPR.G559' => 'tpr', 'TWI14G0070' => 'twi', 'TWI14G0729' => 'twi', 'TWI18G0596' => 'twi', 'TWI39G0780' => 'twi', 'TWI39G0850' => 'twi', 'TWI73G1052' => 'twi', 'unitig_52.g17485' => 'ugi', 'unitig_61.g26355' => 'ugi', 'vmacro01040' => 'vma', 'vmacro16731' => 'vma', 'vmacro18270' => 'vma', 'vmacro19142' => 'vma', 'vmacro19407' => 'vma', 'vmacro19408' => 'vma', 'vmacro21899' => 'vma', 'vmacro21900' => 'vma', 'vmacro21901' => 'vma', 'VMungo0251G0490' => 'vmu', 'VMungo0251G1748' => 'vmu', 'VMungo1309G0421' => 'vmu', 'Zm00001eb086500' => 'zma', 'Zm00001eb150680' => 'zma', 'Zm00001eb162330' => 'zma', 'Zm00001eb203130' => 'zma', 'Zm00001eb369480' => 'zma', 'Zm00001eb382340' => 'zma', 'Zm00001eb416360' => 'zma' ), 'gf_id' => 'HOM05D000902', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000902' ), 'data_identifier' => 'HOM05D000902', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000902', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '663', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02470' => 'bna', 'A01p16260' => 'bna', 'A02p01680' => 'bna', 'A03p16600' => 'bna', 'A03p55660' => 'bna', 'A03p64160' => 'bna', 'A03p64170' => 'bna', 'A08p31900' => 'bna', 'A09p59530' => 'bna', 'A10p08230' => 'bna', 'A10p25090' => 'bna', 'Aa31LG3G7100' => 'aar', 'Aa31LG3G7110' => 'aar', 'Aa31LG6G13160' => 'aar', 'Aa31LG7G10770' => 'aar', 'Aa31LG7G3830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2723' => 'aag', 'Actinidia08045' => 'ach', 'Actinidia08888' => 'ach', 'Actinidia18333' => 'ach', 'Actinidia19334' => 'ach', 'Actinidia25552' => 'ach', 'Actinidia26089' => 'ach', 'Actinidia30615' => 'ach', 'Actinidia30616' => 'ach', 'Actinidia33083' => 'ach', 'Actinidia35762' => 'ach', 'Ah.02g110620' => 'amhyb', 'Ah.11g046390' => 'amhyb', 'AL1G31670' => 'aly', 'AL6G23730' => 'aly', 'AL7G14740' => 'aly', 'AL7G14750' => 'aly', 'AL7G14760' => 'aly', 'AL7G28220' => 'aly', 'AL8G24940' => 'aly', 'Aqoxy3G01665' => 'aox', 'Aqoxy3G02853' => 'aox', 'Aqoxy5G01513' => 'aox', 'Aqoxy5G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8SKA4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ75LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKDA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0LJZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7REX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZP4YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWX7I5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2QKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS0L9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPCD8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q161UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC7XCF' => 'arhy', 'AT1G19100' => 'ath', 'AT4G24970' => 'ath', 'AT4G36270' => 'ath', 'AT4G36280' => 'ath', 'AT4G36290' => 'ath', 'AT5G13130' => 'ath', 'AT5G50780' => 'ath', 'ATR0582G266' => 'atr', 'ATR0661G195' => 'atr', 'ATR1152G031' => 'atr', 'Atru.chr11.2382' => 'acertr', 'Atru.chr12.2337' => 'acertr', 'Atru.chr3.744' => 'acertr', 'Atru.chr6.1870' => 'acertr', 'Atru.chr9.2515' => 'acertr', 'AUR62004120' => 'cqu', 'AUR62005667' => 'cqu', 'AUR62007634' => 'cqu', 'AUR62008186' => 'cqu', 'AUR62008187' => 'cqu', 'AUR62008188' => 'cqu', 'AUR62027954' => 'cqu', 'AUR62028766' => 'cqu', 'AUR62028767' => 'cqu', 'AUR62028768' => 'cqu', 'AUR62028886' => 'cqu', 'AUR62029563' => 'cqu', 'AUR62038832' => 'cqu', 'BcaB01g04149' => 'bca', 'BcaB03g12940' => 'bca', 'BcaB03g13090' => 'bca', 'BcaB03g14466' => 'bca', 'BcaB05g24035' => 'bca', 'BcaC01g06050' => 'bca', 'BcaC04g19148' => 'bca', 'BcaC04g20761' => 'bca', 'BcaC06g32845' => 'bca', 'BcaC07g41274' => 'bca', 'BcaC09g50827' => 'bca', 'BcaNung00741' => 'bca', 'BcaNung00742' => 'bca', 'BcaNung01859' => 'bca', 'BcaNung03985' => 'bca', 'BcaNung03989' => 'bca', 'BcaNung05661' => 'bca', 'BolC1t00257H' => 'bol', 'BolC1t01956H' => 'bol', 'BolC2t06534H' => 'bol', 'BolC3t14334H' => 'bol', 'BolC5t30451H' => 'bol', 'BolC7t45880H' => 'bol', 'BolC7t46586H' => 'bol', 'BolC8t49301H' => 'bol', 'BolC8t51837H' => 'bol', 'BolC9t56822H' => 'bol', 'BolC9t59235H' => 'bol', 'BraA01t00234Z' => 'bra', 'BraA01t01563Z' => 'bra', 'BraA02t05147Z' => 'bra', 'BraA03t10947Z' => 'bra', 'BraA03t14633Z' => 'bra', 'BraA08t35112Z' => 'bra', 'BraA09t41330Z' => 'bra', 'BraA10t44570Z' => 'bra', 'C01p02670' => 'bna', 'C01p20260' => 'bna', 'C02p05890' => 'bna', 'C03p19530' => 'bna', 'C05p17470' => 'bna', 'C07p53900' => 'bna', 'C07p61630' => 'bna', 'C08p16800' => 'bna', 'C08p42810' => 'bna', 'C09p39480' => 'bna', 'C09p63980' => 'bna', 'CAN.G1001.7' => 'can', 'CAN.G1034.55' => 'can', 'CAN.G143.7' => 'can', 'CAN.G3340.1' => 'can', 'CAN.G358.19' => 'can', 'CAN.G373.2' => 'can', 'CAN.G674.16' => 'can', 'CAN.G674.17' => 'can', 'CAN.G674.18' => 'can', 'CAN.G732.2' => 'can', 'CAN.G732.3' => 'can', 'CAN.G993.39' => 'can', 'CANSAT01G2052' => 'cansat', 'CANSAT80G0070' => 'cansat', 'CANSAT80G0483' => 'cansat', 'CANSAT80G0625' => 'cansat', 'CARHR019690' => 'chi', 'CARHR080280' => 'chi', 'CARHR152750' => 'chi', 'CARHR152760' => 'chi', 'CARHR152770' => 'chi', 'CARHR200340' => 'chi', 'CARHR232370' => 'chi', 'CARHR244670' => 'chi', 'CARHR244680' => 'chi', 'CARHR257520' => 'chi', 'Carub.0001s1872' => 'cru', 'Carub.0006s1130' => 'cru', 'Carub.0007s0396' => 'cru', 'Carub.0007s0397' => 'cru', 'Carub.0007s1608' => 'cru', 'Carub.0008s1068' => 'cru', 'Carub.0008s1077' => 'cru', 'Ca_16158_v3' => 'car', 'Ca_17571_v3' => 'car', 'Ca_21936_v3' => 'car', 'Ca_22350_v3' => 'car', 'CBR_g22445' => 'cbr', 'CBR_g26290' => 'cbr', 'Cc04_g09610' => 'ccan', 'Cc04_g12280' => 'ccan', 'Cc07_g10230' => 'ccan', 'CDE02G0093' => 'cde', 'CDE02G0701' => 'cde', 'CDE04G1050' => 'cde', 'CDE05G1833' => 'cde', 'CDE05G3058' => 'cde', 'CDE05G3380' => 'cde', 'CDE06G0536' => 'cde', 'Cfa006923' => 'cfa', 'Cfa009402' => 'cfa', 'Cfa018751' => 'cfa', 'Cfa019164' => 'cfa', 'Cfa022935' => 'cfa', 'Ciclev10019081m.g' => 'ccl', 'Ciclev10025076m.g' => 'ccl', 'Ciclev10030712m.g' => 'ccl', 'Ciclev10033760m.g' => 'ccl', 'CiPaw.05G105600' => 'cil', 'CiPaw.08G136700' => 'cil', 'CiPaw.11G003900' => 'cil', 'CiPaw.11G023700' => 'cil', 'CiPaw.12G003700' => 'cil', 'ClCG06G017100' => 'cla', 'ClCG06G018110' => 'cla', 'ClCG07G008800' => 'cla', 'ClCG07G015330' => 'cla', 'COL.COLO4_13698' => 'col', 'COL.COLO4_16659' => 'col', 'COL.COLO4_21986' => 'col', 'COL.COLO4_24049' => 'col', 'COL.COLO4_29061' => 'col', 'COL.COLO4_29075' => 'col', 'COL.COLO4_30094' => 'col', 'Cpa.g.c33689' => 'cpa', 'Cpa.g.sc108.39' => 'cpa', 'Cpa.g.sc108.41' => 'cpa', 'Cpa.g.sc1163.1' => 'cpa', 'Cpa.g.sc4.155' => 'cpa', 'Cpa.g.sc6.194' => 'cpa', 'CsaV3_1G000340' => 'csa', 'CsaV3_1G001400' => 'csa', 'CsaV3_4G002220' => 'csa', 'CsaV3_4G005370' => 'csa', 'CSS0007487' => 'camsi', 'CSS0008066' => 'camsi', 'CSS0009120' => 'camsi', 'CSS0015512' => 'camsi', 'CSS0022409' => 'camsi', 'CSS0025358' => 'camsi', 'CSS0044547' => 'camsi', 'DCAR_013057' => 'dca', 'DCAR_015058' => 'dca', 'DCAR_016027' => 'dca', 'DCAR_017327' => 'dca', 'DCAR_020743' => 'dca', 'DCAR_026157' => 'dca', 'DCAR_032339' => 'dca', 'DCAR_032340' => 'dca', 'Dinv11200' => 'din', 'Dinv11201' => 'din', 'Dinv20631' => 'din', 'Dinv23182' => 'din', 'Dinv33466' => 'din', 'Dinv33583' => 'din', 'Dinv38565' => 'din', 'Duzib068G0200' => 'dzi', 'Duzib147G0132' => 'dzi', 'Duzib147G0635' => 'dzi', 'Duzib205G1670' => 'dzi', 'Duzib251G0606' => 'dzi', 'ECA232G3336' => 'eca', 'ECA232G3763' => 'eca', 'ECA232G4845' => 'eca', 'ECA234G1607' => 'eca', 'ECA246G0932' => 'eca', 'ECA247G0781' => 'eca', 'ECA247G1932' => 'eca', 'ECA247G2079' => 'eca', 'ECA247G3338' => 'eca', 'ECA247G4115' => 'eca', 'EL10Ac3g06552' => 'bvu', 'EL10Ac5g10721' => 'bvu', 'EL10Ac5g10722' => 'bvu', 'EL10Ac5g10723' => 'bvu', 'EL10Ac5g11361' => 'bvu', 'EL10Ac6g13553' => 'bvu', 'EL10As8g23872' => 'bvu', 'Eucgr.B00250' => 'egr', 'Eucgr.B00251' => 'egr', 'Eucgr.B03533' => 'egr', 'Eucgr.I02381' => 'egr', 'Eucgr.K02700' => 'egr', 'FAN02G0174' => 'fan', 'FAN02G3146' => 'fan', 'FAN04G1672' => 'fan', 'FAN04G2273' => 'fan', 'FAN05G2791' => 'fan', 'FAN05G4035' => 'fan', 'FAN07G0834' => 'fan', 'FAN08G1198' => 'fan', 'FAN09G4182' => 'fan', 'FAN12G0496' => 'fan', 'FAN13G1027' => 'fan', 'FAN13G2951' => 'fan', 'FAN14G0705' => 'fan', 'FAN14G0720' => 'fan', 'FAN17G0201' => 'fan', 'FAN17G2665' => 'fan', 'FAN18G1456' => 'fan', 'FAN18G1525' => 'fan', 'FAN18G3500' => 'fan', 'FAN28G2670' => 'fan', 'FvH4_1g12391' => 'fve', 'FvH4_4g23220' => 'fve', 'FvH4_5g08810' => 'fve', 'FvH4_5g28960' => 'fve', 'FvH4_6g42820' => 'fve', 'FvH4_6g51110' => 'fve', 'Glyma.02G051802' => 'gma', 'Glyma.04G185300' => 'gma', 'Glyma.05G202900' => 'gma', 'Glyma.08G010300' => 'gma', 'Glyma.16G131900' => 'gma', 'Glyma.17G087900' => 'gma', 'Gohir.A07G048600' => 'ghi', 'Gohir.A11G179000' => 'ghi', 'Gohir.A12G140900' => 'ghi', 'Gohir.A12G140950' => 'ghi', 'Gohir.A12G191700' => 'ghi', 'Gohir.A13G086300' => 'ghi', 'Gohir.D07G052900' => 'ghi', 'Gohir.D11G186600' => 'ghi', 'Gohir.D12G145575' => 'ghi', 'Gohir.D12G145650' => 'ghi', 'Gohir.D12G145725' => 'ghi', 'Gohir.D12G194050' => 'ghi', 'Gohir.D13G091800' => 'ghi', 'Gorai.001G055900' => 'gra', 'Gorai.007G198400' => 'gra', 'Gorai.008G157000' => 'gra', 'Gorai.008G157100' => 'gra', 'Gorai.008G208700' => 'gra', 'Gorai.010G138700' => 'gra', 'GSVIVG01000977001' => 'vvi', 'GSVIVG01007708001' => 'vvi', 'GSVIVG01008587001' => 'vvi', 'GSVIVG01018849001' => 'vvi', 'GSVIVG01032432001' => 'vvi', 'HanXRQChr02g0034131' => 'han', 'HanXRQChr02g0035981' => 'han', 'HanXRQChr02g0035991' => 'han', 'HanXRQChr05g0155611' => 'han', 'HanXRQChr05g0155621' => 'han', 'HanXRQChr08g0236501' => 'han', 'HanXRQChr09g0261321' => 'han', 'HanXRQChr09g0272081' => 'han', 'HanXRQChr10g0310741' => 'han', 'HanXRQChr11g0325591' => 'han', 'HanXRQChr12g0385691' => 'han', 'HanXRQChr13g0387801' => 'han', 'HanXRQChr15g0463011' => 'han', 'Haze_03826' => 'cav', 'Haze_03827' => 'cav', 'Haze_07183' => 'cav', 'Haze_07537' => 'cav', 'Haze_07539' => 'cav', 'Haze_12461' => 'cav', 'Haze_16115' => 'cav', 'Haze_16808' => 'cav', 'Haze_18531' => 'cav', 'Hma1.2p1_0046F.1_g026700' => 'hma', 'Hma1.2p1_0046F.1_g026710' => 'hma', 'Hma1.2p1_0168F.1_g074340' => 'hma', 'Hma1.2p1_0266F.1_g107030' => 'hma', 'Hma1.2p1_0266F.1_g107060' => 'hma', 'Hma1.2p1_0275F.1_g110510' => 'hma', 'Hma1.2p1_0592F.1_g185490' => 'hma', 'Hma1.2p1_0592F.1_g185500' => 'hma', 'Hma1.2p1_0592F.1_g185510' => 'hma', 'Hma1.2p1_0592F.1_g185520' => 'hma', 'Hma1.2p1_0592F.1_g185530' => 'hma', 'Hma1.2p1_0818F.1_g223450' => 'hma', 'HPP92_009708' => 'vpl', 'HPP92_009793' => 'vpl', 'HPP92_009796' => 'vpl', 'HPP92_009797' => 'vpl', 'HPP92_014940' => 'vpl', 'HPP92_014988' => 'vpl', 'Hund02463' => 'sun', 'Hund02760' => 'sun', 'Hund05071' => 'sun', 'Hund10108' => 'sun', 'Hund11204' => 'sun', 'Hund14016' => 'sun', 'Hund16464' => 'sun', 'Lalb_Chr09g0333391' => 'lal', 'Lalb_Chr11g0070461' => 'lal', 'Lalb_Chr12g0201671' => 'lal', 'Lalb_Chr13g0297161' => 'lal', 'Lj1g0002823' => 'lja', 'Lj3C1074T6' => 'lonja', 'Lj4A212T28' => 'lonja', 'Lj4g0005516' => 'lja', 'Lj4g0013705' => 'lja', 'Lj4g0027865' => 'lja', 'Lj5C92G16' => 'lonja', 'Lj5C92T12' => 'lonja', 'Lj7C596T3' => 'lonja', 'Lj9A446G59' => 'lonja', 'Lj9A482G21' => 'lonja', 'Lsat_1_v5_gn_1_28261' => 'lsa', 'Lsat_1_v5_gn_1_28281' => 'lsa', 'Lsat_1_v5_gn_1_32721' => 'lsa', 'Lsat_1_v5_gn_4_151760' => 'lsa', 'Lsat_1_v5_gn_4_2120' => 'lsa', 'Lsat_1_v5_gn_4_75761' => 'lsa', 'Lsat_1_v5_gn_5_10920' => 'lsa', 'Manes.02G099900' => 'mes', 'Manes.11G096200' => 'mes', 'Manes.12G007200' => 'mes', 'Manes.14G048300' => 'mes', 'Manes.17G114700' => 'mes', 'Mapoly0002s0070' => 'mpo', 'Mapoly0029s0099' => 'mpo', 'MBI07_g24742_MAGBIO' => 'mbi', 'MBI10_g27988_MAGBIO' => 'mbi', 'MBI11_g13057_MAGBIO' => 'mbi', 'MD02G1137200' => 'mdo', 'MD06G1137200' => 'mdo', 'MD07G1122300' => 'mdo', 'MD09G1078200' => 'mdo', 'MD13G1123700' => 'mdo', 'MD14G1151900' => 'mdo', 'MD17G1030900' => 'mdo', 'MD17G1068200' => 'mdo', 'MD17G1068600' => 'mdo', 'Medtr3g077540' => 'mtr', 'Medtr4g105530' => 'mtr', 'Medtr8g076580' => 'mtr', 'Medtr8g076590' => 'mtr', 'Medtr8g096410' => 'mtr', 'MELO3C016411.2' => 'cme', 'MELO3C017780.2' => 'cme', 'MELO3C022560.2' => 'cme', 'MELO3C026187.2' => 'cme', 'MELO3C026286.2' => 'cme', 'MELO3C032854.2' => 'cme', 'Migut.H02495' => 'egut', 'Migut.I00561' => 'egut', 'Migut.K01015' => 'egut', 'Migut.K01016' => 'egut', 'Migut.L00743' => 'egut', 'Migut.L00744' => 'egut', 'Migut.L00746' => 'egut', 'Migut.L00798' => 'egut', 'Migut.L00799' => 'egut', 'Migut.N02096' => 'egut', 'MSTRG.11259' => 'ama', 'MSTRG.23142' => 'ama', 'MSTRG.2499' => 'ama', 'Nitab4.5_0000003g0730' => 'nta', 'Nitab4.5_0000137g0020' => 'nta', 'Nitab4.5_0000721g0210' => 'nta', 'Nitab4.5_0000723g0050' => 'nta', 'Nitab4.5_0000913g0070' => 'nta', 'Nitab4.5_0001332g0040' => 'nta', 'Nitab4.5_0001771g0050' => 'nta', 'Nitab4.5_0001918g0050' => 'nta', 'Nitab4.5_0002686g0030' => 'nta', 'Nitab4.5_0003156g0020' => 'nta', 'Nitab4.5_0003383g0040' => 'nta', 'Nitab4.5_0003918g0010' => 'nta', 'Nitab4.5_0006760g0010' => 'nta', 'Nn1g05981' => 'nnu', 'Nn1g06288' => 'nnu', 'Nn3g16371' => 'nnu', 'Nn3g16786' => 'nnu', 'Nn4g22232' => 'nnu', 'Oeu005144.1' => 'oeu', 'Oeu005145.1' => 'oeu', 'Oeu011348.1' => 'oeu', 'Oeu016415.1' => 'oeu', 'Oeu023501.1' => 'oeu', 'Oeu044473.1' => 'oeu', 'Oeu048892.2' => 'oeu', 'Os01g0549200' => 'osa', 'Os02g0469300' => 'osa', 'Os04g0311100' => 'osa', 'Os06g0474900' => 'osa', 'Os10g0181700' => 'osa', 'Os11g0454800' => 'osa', 'Peaxi162Scf00037g00714' => 'pax', 'Peaxi162Scf00084g01217' => 'pax', 'Peaxi162Scf00257g00217' => 'pax', 'Peaxi162Scf00516g00215' => 'pax', 'Peaxi162Scf00689g00123' => 'pax', 'PGR044G2719' => 'pgr', 'PGR083G1360' => 'pgr', 'PGR102G2849' => 'pgr', 'PGR119G2534' => 'pgr', 'PGSC0003DMG400003538' => 'stu', 'PGSC0003DMG400028138' => 'stu', 'PGSC0003DMG400031732' => 'stu', 'PGSC0003DMG400038165' => 'stu', 'Phvul.002G284600' => 'pvu', 'Phvul.003G258200' => 'pvu', 'Phvul.009G176500' => 'pvu', 'Potri.003G167201' => 'ptr', 'Potri.005G118400' => 'ptr', 'Potri.012G089000' => 'ptr', 'Potri.012G102800' => 'ptr', 'Potri.015G079400' => 'ptr', 'Potri.015G100900' => 'ptr', 'Pp3c14_9810' => 'ppa', 'Pp3c15_10450' => 'ppa', 'Pp3c20_19150' => 'ppa', 'Pp3c23_12740' => 'ppa', 'Pp3c23_6310' => 'ppa', 'Pp3c24_3720' => 'ppa', 'Pp3c27_2580' => 'ppa', 'Pp3c9_8990' => 'ppa', 'PRCOL_00002854' => 'pco', 'Prupe.1G221200' => 'ppe', 'Prupe.3G289000' => 'ppe', 'Prupe.5G147000' => 'ppe', 'Prupe.6G157300' => 'ppe', 'Prupe.7G163400' => 'ppe', 'Psat0s2177g0040' => 'psa', 'Psat3g174760' => 'psa', 'Psat3g192160' => 'psa', 'Psat4g058520' => 'psa', 'Psat4g096840' => 'psa', 'Psat7g037320' => 'psa', 'PSO017G1274' => 'pso', 'PSO017G5166' => 'pso', 'PSO063G4558' => 'pso', 'PSO170G4458' => 'pso', 'PSO170G5005' => 'pso', 'PSO210G6156' => 'pso', 'PSO210G6635' => 'pso', 'PSO210G7397' => 'pso', 'PSO210G7700' => 'pso', 'PSO455G0035' => 'pso', 'PSO455G0180' => 'pso', 'PSO478G4515' => 'pso', 'PSO832G1305' => 'pso', 'PSO832G3489' => 'pso', 'QL02p075247' => 'qlo', 'QL03p051148' => 'qlo', 'QL05p010313' => 'qlo', 'QL06p034627' => 'qlo', 'QL10p001889' => 'qlo', 'QL10p010846' => 'qlo', 'RcHm_v2.0_Chr1g0350621' => 'rch', 'RcHm_v2.0_Chr1g0350641' => 'rch', 'RcHm_v2.0_Chr2g0092891' => 'rch', 'RcHm_v2.0_Chr2g0100251' => 'rch', 'RcHm_v2.0_Chr2g0158661' => 'rch', 'RcHm_v2.0_Chr2g0172741' => 'rch', 'RcHm_v2.0_Chr4g0429571' => 'rch', 'RcHm_v2.0_Chr5g0042471' => 'rch', 'RcHm_v2.0_Chr7g0189451' => 'rch', 'Rhsim08G0052000' => 'rsi', 'Rhsim08G0174400' => 'rsi', 'Rhsim08G0193200' => 'rsi', 'Rhsim10G0214800' => 'rsi', 'Rhsim10G0214900' => 'rsi', 'Rhsim10G0215000' => 'rsi', 'Rhsim12G0022900' => 'rsi', 'Rhsim12G0177500' => 'rsi', 'Rhsim12G0177700' => 'rsi', 'Sabra03G0122600' => 'sbr', 'Sabra05G0097400' => 'sbr', 'Sabra12G0064100' => 'sbr', 'Sabra15G0121300' => 'sbr', 'SalBow2G0642' => 'sbo', 'SalBow5G2667' => 'sbo', 'SalBow5G4873' => 'sbo', 'SalBow8G2395' => 'sbo', 'Sc03g0003290' => 'sci', 'Sc10g0010130' => 'sci', 'Sc22g0003650' => 'sci', 'Sed0001603' => 'sed', 'Sed0004259' => 'sed', 'Sed0006789' => 'sed', 'Sed0011838' => 'sed', 'Sed0012964' => 'sed', 'Sed0016383' => 'sed', 'Sed0019010' => 'sed', 'Sed0020188' => 'sed', 'SEGI_04702' => 'sgi', 'SEGI_17231' => 'sgi', 'SEGI_18877' => 'sgi', 'SEGI_25196' => 'sgi', 'SEGI_25515' => 'sgi', 'SEGI_28445' => 'sgi', 'SEGI_37452' => 'sgi', 'SGA_v2.0_scaffold188G40336' => 'sas', 'SGA_v2.0_scaffold228G43247' => 'sas', 'SGA_v2.0_scaffold280G46853' => 'sas', 'SGA_v2.0_scaffold34G13808' => 'sas', 'SGA_v2.0_scaffold40G15576' => 'sas', 'SGA_v2.0_scaffold611G53188' => 'sas', 'SGA_v2.0_scaffold78G25461' => 'sas', 'SGA_v2.0_scaffold90G27888' => 'sas', 'SHI08601' => 'shi', 'SHI08606' => 'shi', 'SHI17117' => 'shi', 'SHI17119' => 'shi', 'SMO118G0201' => 'smo', 'SMO169G0247' => 'smo', 'SMO176G0006' => 'smo', 'SMO176G0015' => 'smo', 'SMO202G0006' => 'smo', 'SMO240G0050' => 'smo', 'SMO286G0009' => 'smo', 'SMO338G0033' => 'smo', 'SMO356G0533' => 'smo', 'SMO364G0382' => 'smo', 'SMO367G0166' => 'smo', 'SMO367G1098' => 'smo', 'Solyc01g009920.3' => 'sly', 'Solyc01g099300.3' => 'sly', 'Solyc02g084700.3' => 'sly', 'Solyc03g097520.3' => 'sly', 'Solyc06g071580.3' => 'sly', 'Solyc10g081760.3' => 'sly', 'Sopen01g005480' => 'spe', 'Sopen01g042850' => 'spe', 'Sopen02g029370' => 'spe', 'Sopen03g028280' => 'spe', 'Sopen06g027870' => 'spe', 'Sopen10g032270' => 'spe', 'Sp5g18180' => 'spa', 'Sp6g12880' => 'spa', 'Sp6g30850' => 'spa', 'Sp7g22960' => 'spa', 'Sp7g34010' => 'spa', 'SpUn1326_0010' => 'spa', 'TAR371G0242' => 'tar', 'TAR622G0638' => 'tar', 'TAR628G1548' => 'tar', 'TAR629G1079' => 'tar', 'TAR629G3413' => 'tar', 'THA.LOC104804249' => 'tha', 'THA.LOC104808315' => 'tha', 'THA.LOC104809238' => 'tha', 'THA.LOC104825484' => 'tha', 'Thecc.01G025500' => 'tca', 'Thecc.03G015800' => 'tca', 'Thecc.03G018000' => 'tca', 'Thecc.03G134800' => 'tca', 'Thecc.04G014700' => 'tca', 'Thhalv10006991m.g' => 'esa', 'Thhalv10012707m.g' => 'esa', 'Thhalv10015739m.g' => 'esa', 'Thhalv10024553m.g' => 'esa', 'Thhalv10024673m.g' => 'esa', 'Thhalv10029187m.g' => 'esa', 'TPR.G12971' => 'tpr', 'TPR.G29396' => 'tpr', 'TPR.G33376' => 'tpr', 'TPR.G35508' => 'tpr', 'TPR.G35516' => 'tpr', 'TPR.G37317' => 'tpr', 'TPR.G37389' => 'tpr', 'TPR.G37523' => 'tpr', 'TPR.G559' => 'tpr', 'TWI14G0070' => 'twi', 'TWI14G0729' => 'twi', 'TWI18G0596' => 'twi', 'TWI39G0780' => 'twi', 'TWI39G0850' => 'twi', 'TWI73G1052' => 'twi', 'unitig_52.g17485' => 'ugi', 'unitig_61.g26355' => 'ugi', 'vmacro01040' => 'vma', 'vmacro16731' => 'vma', 'vmacro18270' => 'vma', 'vmacro19142' => 'vma', 'vmacro19407' => 'vma', 'vmacro19408' => 'vma', 'vmacro21899' => 'vma', 'vmacro21900' => 'vma', 'vmacro21901' => 'vma', 'VMungo0251G0490' => 'vmu', 'VMungo0251G1748' => 'vmu', 'VMungo1309G0421' => 'vmu', 'Zm00001eb086500' => 'zma', 'Zm00001eb150680' => 'zma', 'Zm00001eb162330' => 'zma', 'Zm00001eb203130' => 'zma', 'Zm00001eb369480' => 'zma', 'Zm00001eb382340' => 'zma', 'Zm00001eb416360' => 'zma' ) $gf_id = 'HOM05D000902' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000902' ) $data_identifier = 'HOM05D000902' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 13, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 10, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 6, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 9, 'hma' => (int) 12, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 4, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 6, 'ppa' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 6, 'rch' => (int) 9, 'rsi' => (int) 9, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 12, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 3, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416360' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000902', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '663', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02470' => 'bna', 'A01p16260' => 'bna', 'A02p01680' => 'bna', 'A03p16600' => 'bna', 'A03p55660' => 'bna', 'A03p64160' => 'bna', 'A03p64170' => 'bna', 'A08p31900' => 'bna', 'A09p59530' => 'bna', 'A10p08230' => 'bna', 'A10p25090' => 'bna', 'Aa31LG3G7100' => 'aar', 'Aa31LG3G7110' => 'aar', 'Aa31LG6G13160' => 'aar', 'Aa31LG7G10770' => 'aar', 'Aa31LG7G3830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2723' => 'aag', 'Actinidia08045' => 'ach', 'Actinidia08888' => 'ach', 'Actinidia18333' => 'ach', 'Actinidia19334' => 'ach', 'Actinidia25552' => 'ach', 'Actinidia26089' => 'ach', 'Actinidia30615' => 'ach', 'Actinidia30616' => 'ach', 'Actinidia33083' => 'ach', 'Actinidia35762' => 'ach', 'Ah.02g110620' => 'amhyb', 'Ah.11g046390' => 'amhyb', 'AL1G31670' => 'aly', 'AL6G23730' => 'aly', 'AL7G14740' => 'aly', 'AL7G14750' => 'aly', 'AL7G14760' => 'aly', 'AL7G28220' => 'aly', 'AL8G24940' => 'aly', 'Aqoxy3G01665' => 'aox', 'Aqoxy3G02853' => 'aox', 'Aqoxy5G01513' => 'aox', 'Aqoxy5G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8SKA4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ75LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKDA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0LJZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7REX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZP4YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWX7I5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2QKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS0L9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPCD8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q161UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC7XCF' => 'arhy', 'AT1G19100' => 'ath', 'AT4G24970' => 'ath', 'AT4G36270' => 'ath', 'AT4G36280' => 'ath', 'AT4G36290' => 'ath', 'AT5G13130' => 'ath', 'AT5G50780' => 'ath', 'ATR0582G266' => 'atr', 'ATR0661G195' => 'atr', 'ATR1152G031' => 'atr', 'Atru.chr11.2382' => 'acertr', 'Atru.chr12.2337' => 'acertr', 'Atru.chr3.744' => 'acertr', 'Atru.chr6.1870' => 'acertr', 'Atru.chr9.2515' => 'acertr', 'AUR62004120' => 'cqu', 'AUR62005667' => 'cqu', 'AUR62007634' => 'cqu', 'AUR62008186' => 'cqu', 'AUR62008187' => 'cqu', 'AUR62008188' => 'cqu', 'AUR62027954' => 'cqu', 'AUR62028766' => 'cqu', 'AUR62028767' => 'cqu', 'AUR62028768' => 'cqu', 'AUR62028886' => 'cqu', 'AUR62029563' => 'cqu', 'AUR62038832' => 'cqu', 'BcaB01g04149' => 'bca', 'BcaB03g12940' => 'bca', 'BcaB03g13090' => 'bca', 'BcaB03g14466' => 'bca', 'BcaB05g24035' => 'bca', 'BcaC01g06050' => 'bca', 'BcaC04g19148' => 'bca', 'BcaC04g20761' => 'bca', 'BcaC06g32845' => 'bca', 'BcaC07g41274' => 'bca', 'BcaC09g50827' => 'bca', 'BcaNung00741' => 'bca', 'BcaNung00742' => 'bca', 'BcaNung01859' => 'bca', 'BcaNung03985' => 'bca', 'BcaNung03989' => 'bca', 'BcaNung05661' => 'bca', 'BolC1t00257H' => 'bol', 'BolC1t01956H' => 'bol', 'BolC2t06534H' => 'bol', 'BolC3t14334H' => 'bol', 'BolC5t30451H' => 'bol', 'BolC7t45880H' => 'bol', 'BolC7t46586H' => 'bol', 'BolC8t49301H' => 'bol', 'BolC8t51837H' => 'bol', 'BolC9t56822H' => 'bol', 'BolC9t59235H' => 'bol', 'BraA01t00234Z' => 'bra', 'BraA01t01563Z' => 'bra', 'BraA02t05147Z' => 'bra', 'BraA03t10947Z' => 'bra', 'BraA03t14633Z' => 'bra', 'BraA08t35112Z' => 'bra', 'BraA09t41330Z' => 'bra', 'BraA10t44570Z' => 'bra', 'C01p02670' => 'bna', 'C01p20260' => 'bna', 'C02p05890' => 'bna', 'C03p19530' => 'bna', 'C05p17470' => 'bna', 'C07p53900' => 'bna', 'C07p61630' => 'bna', 'C08p16800' => 'bna', 'C08p42810' => 'bna', 'C09p39480' => 'bna', 'C09p63980' => 'bna', 'CAN.G1001.7' => 'can', 'CAN.G1034.55' => 'can', 'CAN.G143.7' => 'can', 'CAN.G3340.1' => 'can', 'CAN.G358.19' => 'can', 'CAN.G373.2' => 'can', 'CAN.G674.16' => 'can', 'CAN.G674.17' => 'can', 'CAN.G674.18' => 'can', 'CAN.G732.2' => 'can', 'CAN.G732.3' => 'can', 'CAN.G993.39' => 'can', 'CANSAT01G2052' => 'cansat', 'CANSAT80G0070' => 'cansat', 'CANSAT80G0483' => 'cansat', 'CANSAT80G0625' => 'cansat', 'CARHR019690' => 'chi', 'CARHR080280' => 'chi', 'CARHR152750' => 'chi', 'CARHR152760' => 'chi', 'CARHR152770' => 'chi', 'CARHR200340' => 'chi', 'CARHR232370' => 'chi', 'CARHR244670' => 'chi', 'CARHR244680' => 'chi', 'CARHR257520' => 'chi', 'Carub.0001s1872' => 'cru', 'Carub.0006s1130' => 'cru', 'Carub.0007s0396' => 'cru', 'Carub.0007s0397' => 'cru', 'Carub.0007s1608' => 'cru', 'Carub.0008s1068' => 'cru', 'Carub.0008s1077' => 'cru', 'Ca_16158_v3' => 'car', 'Ca_17571_v3' => 'car', 'Ca_21936_v3' => 'car', 'Ca_22350_v3' => 'car', 'CBR_g22445' => 'cbr', 'CBR_g26290' => 'cbr', 'Cc04_g09610' => 'ccan', 'Cc04_g12280' => 'ccan', 'Cc07_g10230' => 'ccan', 'CDE02G0093' => 'cde', 'CDE02G0701' => 'cde', 'CDE04G1050' => 'cde', 'CDE05G1833' => 'cde', 'CDE05G3058' => 'cde', 'CDE05G3380' => 'cde', 'CDE06G0536' => 'cde', 'Cfa006923' => 'cfa', 'Cfa009402' => 'cfa', 'Cfa018751' => 'cfa', 'Cfa019164' => 'cfa', 'Cfa022935' => 'cfa', 'Ciclev10019081m.g' => 'ccl', 'Ciclev10025076m.g' => 'ccl', 'Ciclev10030712m.g' => 'ccl', 'Ciclev10033760m.g' => 'ccl', 'CiPaw.05G105600' => 'cil', 'CiPaw.08G136700' => 'cil', 'CiPaw.11G003900' => 'cil', 'CiPaw.11G023700' => 'cil', 'CiPaw.12G003700' => 'cil', 'ClCG06G017100' => 'cla', 'ClCG06G018110' => 'cla', 'ClCG07G008800' => 'cla', 'ClCG07G015330' => 'cla', 'COL.COLO4_13698' => 'col', 'COL.COLO4_16659' => 'col', 'COL.COLO4_21986' => 'col', 'COL.COLO4_24049' => 'col', 'COL.COLO4_29061' => 'col', 'COL.COLO4_29075' => 'col', 'COL.COLO4_30094' => 'col', 'Cpa.g.c33689' => 'cpa', 'Cpa.g.sc108.39' => 'cpa', 'Cpa.g.sc108.41' => 'cpa', 'Cpa.g.sc1163.1' => 'cpa', 'Cpa.g.sc4.155' => 'cpa', 'Cpa.g.sc6.194' => 'cpa', 'CsaV3_1G000340' => 'csa', 'CsaV3_1G001400' => 'csa', 'CsaV3_4G002220' => 'csa', 'CsaV3_4G005370' => 'csa', 'CSS0007487' => 'camsi', 'CSS0008066' => 'camsi', 'CSS0009120' => 'camsi', 'CSS0015512' => 'camsi', 'CSS0022409' => 'camsi', 'CSS0025358' => 'camsi', 'CSS0044547' => 'camsi', 'DCAR_013057' => 'dca', 'DCAR_015058' => 'dca', 'DCAR_016027' => 'dca', 'DCAR_017327' => 'dca', 'DCAR_020743' => 'dca', 'DCAR_026157' => 'dca', 'DCAR_032339' => 'dca', 'DCAR_032340' => 'dca', 'Dinv11200' => 'din', 'Dinv11201' => 'din', 'Dinv20631' => 'din', 'Dinv23182' => 'din', 'Dinv33466' => 'din', 'Dinv33583' => 'din', 'Dinv38565' => 'din', 'Duzib068G0200' => 'dzi', 'Duzib147G0132' => 'dzi', 'Duzib147G0635' => 'dzi', 'Duzib205G1670' => 'dzi', 'Duzib251G0606' => 'dzi', 'ECA232G3336' => 'eca', 'ECA232G3763' => 'eca', 'ECA232G4845' => 'eca', 'ECA234G1607' => 'eca', 'ECA246G0932' => 'eca', 'ECA247G0781' => 'eca', 'ECA247G1932' => 'eca', 'ECA247G2079' => 'eca', 'ECA247G3338' => 'eca', 'ECA247G4115' => 'eca', 'EL10Ac3g06552' => 'bvu', 'EL10Ac5g10721' => 'bvu', 'EL10Ac5g10722' => 'bvu', 'EL10Ac5g10723' => 'bvu', 'EL10Ac5g11361' => 'bvu', 'EL10Ac6g13553' => 'bvu', 'EL10As8g23872' => 'bvu', 'Eucgr.B00250' => 'egr', 'Eucgr.B00251' => 'egr', 'Eucgr.B03533' => 'egr', 'Eucgr.I02381' => 'egr', 'Eucgr.K02700' => 'egr', 'FAN02G0174' => 'fan', 'FAN02G3146' => 'fan', 'FAN04G1672' => 'fan', 'FAN04G2273' => 'fan', 'FAN05G2791' => 'fan', 'FAN05G4035' => 'fan', 'FAN07G0834' => 'fan', 'FAN08G1198' => 'fan', 'FAN09G4182' => 'fan', 'FAN12G0496' => 'fan', 'FAN13G1027' => 'fan', 'FAN13G2951' => 'fan', 'FAN14G0705' => 'fan', 'FAN14G0720' => 'fan', 'FAN17G0201' => 'fan', 'FAN17G2665' => 'fan', 'FAN18G1456' => 'fan', 'FAN18G1525' => 'fan', 'FAN18G3500' => 'fan', 'FAN28G2670' => 'fan', 'FvH4_1g12391' => 'fve', 'FvH4_4g23220' => 'fve', 'FvH4_5g08810' => 'fve', 'FvH4_5g28960' => 'fve', 'FvH4_6g42820' => 'fve', 'FvH4_6g51110' => 'fve', 'Glyma.02G051802' => 'gma', 'Glyma.04G185300' => 'gma', 'Glyma.05G202900' => 'gma', 'Glyma.08G010300' => 'gma', 'Glyma.16G131900' => 'gma', 'Glyma.17G087900' => 'gma', 'Gohir.A07G048600' => 'ghi', 'Gohir.A11G179000' => 'ghi', 'Gohir.A12G140900' => 'ghi', 'Gohir.A12G140950' => 'ghi', 'Gohir.A12G191700' => 'ghi', 'Gohir.A13G086300' => 'ghi', 'Gohir.D07G052900' => 'ghi', 'Gohir.D11G186600' => 'ghi', 'Gohir.D12G145575' => 'ghi', 'Gohir.D12G145650' => 'ghi', 'Gohir.D12G145725' => 'ghi', 'Gohir.D12G194050' => 'ghi', 'Gohir.D13G091800' => 'ghi', 'Gorai.001G055900' => 'gra', 'Gorai.007G198400' => 'gra', 'Gorai.008G157000' => 'gra', 'Gorai.008G157100' => 'gra', 'Gorai.008G208700' => 'gra', 'Gorai.010G138700' => 'gra', 'GSVIVG01000977001' => 'vvi', 'GSVIVG01007708001' => 'vvi', 'GSVIVG01008587001' => 'vvi', 'GSVIVG01018849001' => 'vvi', 'GSVIVG01032432001' => 'vvi', 'HanXRQChr02g0034131' => 'han', 'HanXRQChr02g0035981' => 'han', 'HanXRQChr02g0035991' => 'han', 'HanXRQChr05g0155611' => 'han', 'HanXRQChr05g0155621' => 'han', 'HanXRQChr08g0236501' => 'han', 'HanXRQChr09g0261321' => 'han', 'HanXRQChr09g0272081' => 'han', 'HanXRQChr10g0310741' => 'han', 'HanXRQChr11g0325591' => 'han', 'HanXRQChr12g0385691' => 'han', 'HanXRQChr13g0387801' => 'han', 'HanXRQChr15g0463011' => 'han', 'Haze_03826' => 'cav', 'Haze_03827' => 'cav', 'Haze_07183' => 'cav', 'Haze_07537' => 'cav', 'Haze_07539' => 'cav', 'Haze_12461' => 'cav', 'Haze_16115' => 'cav', 'Haze_16808' => 'cav', 'Haze_18531' => 'cav', 'Hma1.2p1_0046F.1_g026700' => 'hma', 'Hma1.2p1_0046F.1_g026710' => 'hma', 'Hma1.2p1_0168F.1_g074340' => 'hma', 'Hma1.2p1_0266F.1_g107030' => 'hma', 'Hma1.2p1_0266F.1_g107060' => 'hma', 'Hma1.2p1_0275F.1_g110510' => 'hma', 'Hma1.2p1_0592F.1_g185490' => 'hma', 'Hma1.2p1_0592F.1_g185500' => 'hma', 'Hma1.2p1_0592F.1_g185510' => 'hma', 'Hma1.2p1_0592F.1_g185520' => 'hma', 'Hma1.2p1_0592F.1_g185530' => 'hma', 'Hma1.2p1_0818F.1_g223450' => 'hma', 'HPP92_009708' => 'vpl', 'HPP92_009793' => 'vpl', 'HPP92_009796' => 'vpl', 'HPP92_009797' => 'vpl', 'HPP92_014940' => 'vpl', 'HPP92_014988' => 'vpl', 'Hund02463' => 'sun', 'Hund02760' => 'sun', 'Hund05071' => 'sun', 'Hund10108' => 'sun', 'Hund11204' => 'sun', 'Hund14016' => 'sun', 'Hund16464' => 'sun', 'Lalb_Chr09g0333391' => 'lal', 'Lalb_Chr11g0070461' => 'lal', 'Lalb_Chr12g0201671' => 'lal', 'Lalb_Chr13g0297161' => 'lal', 'Lj1g0002823' => 'lja', 'Lj3C1074T6' => 'lonja', 'Lj4A212T28' => 'lonja', 'Lj4g0005516' => 'lja', 'Lj4g0013705' => 'lja', 'Lj4g0027865' => 'lja', 'Lj5C92G16' => 'lonja', 'Lj5C92T12' => 'lonja', 'Lj7C596T3' => 'lonja', 'Lj9A446G59' => 'lonja', 'Lj9A482G21' => 'lonja', 'Lsat_1_v5_gn_1_28261' => 'lsa', 'Lsat_1_v5_gn_1_28281' => 'lsa', 'Lsat_1_v5_gn_1_32721' => 'lsa', 'Lsat_1_v5_gn_4_151760' => 'lsa', 'Lsat_1_v5_gn_4_2120' => 'lsa', 'Lsat_1_v5_gn_4_75761' => 'lsa', 'Lsat_1_v5_gn_5_10920' => 'lsa', 'Manes.02G099900' => 'mes', 'Manes.11G096200' => 'mes', 'Manes.12G007200' => 'mes', 'Manes.14G048300' => 'mes', 'Manes.17G114700' => 'mes', 'Mapoly0002s0070' => 'mpo', 'Mapoly0029s0099' => 'mpo', 'MBI07_g24742_MAGBIO' => 'mbi', 'MBI10_g27988_MAGBIO' => 'mbi', 'MBI11_g13057_MAGBIO' => 'mbi', 'MD02G1137200' => 'mdo', 'MD06G1137200' => 'mdo', 'MD07G1122300' => 'mdo', 'MD09G1078200' => 'mdo', 'MD13G1123700' => 'mdo', 'MD14G1151900' => 'mdo', 'MD17G1030900' => 'mdo', 'MD17G1068200' => 'mdo', 'MD17G1068600' => 'mdo', 'Medtr3g077540' => 'mtr', 'Medtr4g105530' => 'mtr', 'Medtr8g076580' => 'mtr', 'Medtr8g076590' => 'mtr', 'Medtr8g096410' => 'mtr', 'MELO3C016411.2' => 'cme', 'MELO3C017780.2' => 'cme', 'MELO3C022560.2' => 'cme', 'MELO3C026187.2' => 'cme', 'MELO3C026286.2' => 'cme', 'MELO3C032854.2' => 'cme', 'Migut.H02495' => 'egut', 'Migut.I00561' => 'egut', 'Migut.K01015' => 'egut', 'Migut.K01016' => 'egut', 'Migut.L00743' => 'egut', 'Migut.L00744' => 'egut', 'Migut.L00746' => 'egut', 'Migut.L00798' => 'egut', 'Migut.L00799' => 'egut', 'Migut.N02096' => 'egut', 'MSTRG.11259' => 'ama', 'MSTRG.23142' => 'ama', 'MSTRG.2499' => 'ama', 'Nitab4.5_0000003g0730' => 'nta', 'Nitab4.5_0000137g0020' => 'nta', 'Nitab4.5_0000721g0210' => 'nta', 'Nitab4.5_0000723g0050' => 'nta', 'Nitab4.5_0000913g0070' => 'nta', 'Nitab4.5_0001332g0040' => 'nta', 'Nitab4.5_0001771g0050' => 'nta', 'Nitab4.5_0001918g0050' => 'nta', 'Nitab4.5_0002686g0030' => 'nta', 'Nitab4.5_0003156g0020' => 'nta', 'Nitab4.5_0003383g0040' => 'nta', 'Nitab4.5_0003918g0010' => 'nta', 'Nitab4.5_0006760g0010' => 'nta', 'Nn1g05981' => 'nnu', 'Nn1g06288' => 'nnu', 'Nn3g16371' => 'nnu', 'Nn3g16786' => 'nnu', 'Nn4g22232' => 'nnu', 'Oeu005144.1' => 'oeu', 'Oeu005145.1' => 'oeu', 'Oeu011348.1' => 'oeu', 'Oeu016415.1' => 'oeu', 'Oeu023501.1' => 'oeu', 'Oeu044473.1' => 'oeu', 'Oeu048892.2' => 'oeu', 'Os01g0549200' => 'osa', 'Os02g0469300' => 'osa', 'Os04g0311100' => 'osa', 'Os06g0474900' => 'osa', 'Os10g0181700' => 'osa', 'Os11g0454800' => 'osa', 'Peaxi162Scf00037g00714' => 'pax', 'Peaxi162Scf00084g01217' => 'pax', 'Peaxi162Scf00257g00217' => 'pax', 'Peaxi162Scf00516g00215' => 'pax', 'Peaxi162Scf00689g00123' => 'pax', 'PGR044G2719' => 'pgr', 'PGR083G1360' => 'pgr', 'PGR102G2849' => 'pgr', 'PGR119G2534' => 'pgr', 'PGSC0003DMG400003538' => 'stu', 'PGSC0003DMG400028138' => 'stu', 'PGSC0003DMG400031732' => 'stu', 'PGSC0003DMG400038165' => 'stu', 'Phvul.002G284600' => 'pvu', 'Phvul.003G258200' => 'pvu', 'Phvul.009G176500' => 'pvu', 'Potri.003G167201' => 'ptr', 'Potri.005G118400' => 'ptr', 'Potri.012G089000' => 'ptr', 'Potri.012G102800' => 'ptr', 'Potri.015G079400' => 'ptr', 'Potri.015G100900' => 'ptr', 'Pp3c14_9810' => 'ppa', 'Pp3c15_10450' => 'ppa', 'Pp3c20_19150' => 'ppa', 'Pp3c23_12740' => 'ppa', 'Pp3c23_6310' => 'ppa', 'Pp3c24_3720' => 'ppa', 'Pp3c27_2580' => 'ppa', 'Pp3c9_8990' => 'ppa', 'PRCOL_00002854' => 'pco', 'Prupe.1G221200' => 'ppe', 'Prupe.3G289000' => 'ppe', 'Prupe.5G147000' => 'ppe', 'Prupe.6G157300' => 'ppe', 'Prupe.7G163400' => 'ppe', 'Psat0s2177g0040' => 'psa', 'Psat3g174760' => 'psa', 'Psat3g192160' => 'psa', 'Psat4g058520' => 'psa', 'Psat4g096840' => 'psa', 'Psat7g037320' => 'psa', 'PSO017G1274' => 'pso', 'PSO017G5166' => 'pso', 'PSO063G4558' => 'pso', 'PSO170G4458' => 'pso', 'PSO170G5005' => 'pso', 'PSO210G6156' => 'pso', 'PSO210G6635' => 'pso', 'PSO210G7397' => 'pso', 'PSO210G7700' => 'pso', 'PSO455G0035' => 'pso', 'PSO455G0180' => 'pso', 'PSO478G4515' => 'pso', 'PSO832G1305' => 'pso', 'PSO832G3489' => 'pso', 'QL02p075247' => 'qlo', 'QL03p051148' => 'qlo', 'QL05p010313' => 'qlo', 'QL06p034627' => 'qlo', 'QL10p001889' => 'qlo', 'QL10p010846' => 'qlo', 'RcHm_v2.0_Chr1g0350621' => 'rch', 'RcHm_v2.0_Chr1g0350641' => 'rch', 'RcHm_v2.0_Chr2g0092891' => 'rch', 'RcHm_v2.0_Chr2g0100251' => 'rch', 'RcHm_v2.0_Chr2g0158661' => 'rch', 'RcHm_v2.0_Chr2g0172741' => 'rch', 'RcHm_v2.0_Chr4g0429571' => 'rch', 'RcHm_v2.0_Chr5g0042471' => 'rch', 'RcHm_v2.0_Chr7g0189451' => 'rch', 'Rhsim08G0052000' => 'rsi', 'Rhsim08G0174400' => 'rsi', 'Rhsim08G0193200' => 'rsi', 'Rhsim10G0214800' => 'rsi', 'Rhsim10G0214900' => 'rsi', 'Rhsim10G0215000' => 'rsi', 'Rhsim12G0022900' => 'rsi', 'Rhsim12G0177500' => 'rsi', 'Rhsim12G0177700' => 'rsi', 'Sabra03G0122600' => 'sbr', 'Sabra05G0097400' => 'sbr', 'Sabra12G0064100' => 'sbr', 'Sabra15G0121300' => 'sbr', 'SalBow2G0642' => 'sbo', 'SalBow5G2667' => 'sbo', 'SalBow5G4873' => 'sbo', 'SalBow8G2395' => 'sbo', 'Sc03g0003290' => 'sci', 'Sc10g0010130' => 'sci', 'Sc22g0003650' => 'sci', 'Sed0001603' => 'sed', 'Sed0004259' => 'sed', 'Sed0006789' => 'sed', 'Sed0011838' => 'sed', 'Sed0012964' => 'sed', 'Sed0016383' => 'sed', 'Sed0019010' => 'sed', 'Sed0020188' => 'sed', 'SEGI_04702' => 'sgi', 'SEGI_17231' => 'sgi', 'SEGI_18877' => 'sgi', 'SEGI_25196' => 'sgi', 'SEGI_25515' => 'sgi', 'SEGI_28445' => 'sgi', 'SEGI_37452' => 'sgi', 'SGA_v2.0_scaffold188G40336' => 'sas', 'SGA_v2.0_scaffold228G43247' => 'sas', 'SGA_v2.0_scaffold280G46853' => 'sas', 'SGA_v2.0_scaffold34G13808' => 'sas', 'SGA_v2.0_scaffold40G15576' => 'sas', 'SGA_v2.0_scaffold611G53188' => 'sas', 'SGA_v2.0_scaffold78G25461' => 'sas', 'SGA_v2.0_scaffold90G27888' => 'sas', 'SHI08601' => 'shi', 'SHI08606' => 'shi', 'SHI17117' => 'shi', 'SHI17119' => 'shi', 'SMO118G0201' => 'smo', 'SMO169G0247' => 'smo', 'SMO176G0006' => 'smo', 'SMO176G0015' => 'smo', 'SMO202G0006' => 'smo', 'SMO240G0050' => 'smo', 'SMO286G0009' => 'smo', 'SMO338G0033' => 'smo', 'SMO356G0533' => 'smo', 'SMO364G0382' => 'smo', 'SMO367G0166' => 'smo', 'SMO367G1098' => 'smo', 'Solyc01g009920.3' => 'sly', 'Solyc01g099300.3' => 'sly', 'Solyc02g084700.3' => 'sly', 'Solyc03g097520.3' => 'sly', 'Solyc06g071580.3' => 'sly', 'Solyc10g081760.3' => 'sly', 'Sopen01g005480' => 'spe', 'Sopen01g042850' => 'spe', 'Sopen02g029370' => 'spe', 'Sopen03g028280' => 'spe', 'Sopen06g027870' => 'spe', 'Sopen10g032270' => 'spe', 'Sp5g18180' => 'spa', 'Sp6g12880' => 'spa', 'Sp6g30850' => 'spa', 'Sp7g22960' => 'spa', 'Sp7g34010' => 'spa', 'SpUn1326_0010' => 'spa', 'TAR371G0242' => 'tar', 'TAR622G0638' => 'tar', 'TAR628G1548' => 'tar', 'TAR629G1079' => 'tar', 'TAR629G3413' => 'tar', 'THA.LOC104804249' => 'tha', 'THA.LOC104808315' => 'tha', 'THA.LOC104809238' => 'tha', 'THA.LOC104825484' => 'tha', 'Thecc.01G025500' => 'tca', 'Thecc.03G015800' => 'tca', 'Thecc.03G018000' => 'tca', 'Thecc.03G134800' => 'tca', 'Thecc.04G014700' => 'tca', 'Thhalv10006991m.g' => 'esa', 'Thhalv10012707m.g' => 'esa', 'Thhalv10015739m.g' => 'esa', 'Thhalv10024553m.g' => 'esa', 'Thhalv10024673m.g' => 'esa', 'Thhalv10029187m.g' => 'esa', 'TPR.G12971' => 'tpr', 'TPR.G29396' => 'tpr', 'TPR.G33376' => 'tpr', 'TPR.G35508' => 'tpr', 'TPR.G35516' => 'tpr', 'TPR.G37317' => 'tpr', 'TPR.G37389' => 'tpr', 'TPR.G37523' => 'tpr', 'TPR.G559' => 'tpr', 'TWI14G0070' => 'twi', 'TWI14G0729' => 'twi', 'TWI18G0596' => 'twi', 'TWI39G0780' => 'twi', 'TWI39G0850' => 'twi', 'TWI73G1052' => 'twi', 'unitig_52.g17485' => 'ugi', 'unitig_61.g26355' => 'ugi', 'vmacro01040' => 'vma', 'vmacro16731' => 'vma', 'vmacro18270' => 'vma', 'vmacro19142' => 'vma', 'vmacro19407' => 'vma', 'vmacro19408' => 'vma', 'vmacro21899' => 'vma', 'vmacro21900' => 'vma', 'vmacro21901' => 'vma', 'VMungo0251G0490' => 'vmu', 'VMungo0251G1748' => 'vmu', 'VMungo1309G0421' => 'vmu', 'Zm00001eb086500' => 'zma', 'Zm00001eb150680' => 'zma', 'Zm00001eb162330' => 'zma', 'Zm00001eb203130' => 'zma', 'Zm00001eb369480' => 'zma', 'Zm00001eb382340' => 'zma', 'Zm00001eb416360' => 'zma' ), 'gf_id' => 'HOM05D000902', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000902' ), 'data_identifier' => 'HOM05D000902', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000902', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '663', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02470' => 'bna', 'A01p16260' => 'bna', 'A02p01680' => 'bna', 'A03p16600' => 'bna', 'A03p55660' => 'bna', 'A03p64160' => 'bna', 'A03p64170' => 'bna', 'A08p31900' => 'bna', 'A09p59530' => 'bna', 'A10p08230' => 'bna', 'A10p25090' => 'bna', 'Aa31LG3G7100' => 'aar', 'Aa31LG3G7110' => 'aar', 'Aa31LG6G13160' => 'aar', 'Aa31LG7G10770' => 'aar', 'Aa31LG7G3830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2723' => 'aag', 'Actinidia08045' => 'ach', 'Actinidia08888' => 'ach', 'Actinidia18333' => 'ach', 'Actinidia19334' => 'ach', 'Actinidia25552' => 'ach', 'Actinidia26089' => 'ach', 'Actinidia30615' => 'ach', 'Actinidia30616' => 'ach', 'Actinidia33083' => 'ach', 'Actinidia35762' => 'ach', 'Ah.02g110620' => 'amhyb', 'Ah.11g046390' => 'amhyb', 'AL1G31670' => 'aly', 'AL6G23730' => 'aly', 'AL7G14740' => 'aly', 'AL7G14750' => 'aly', 'AL7G14760' => 'aly', 'AL7G28220' => 'aly', 'AL8G24940' => 'aly', 'Aqoxy3G01665' => 'aox', 'Aqoxy3G02853' => 'aox', 'Aqoxy5G01513' => 'aox', 'Aqoxy5G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8SKA4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ75LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKDA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0LJZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7REX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZP4YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWX7I5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2QKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS0L9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPCD8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q161UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC7XCF' => 'arhy', 'AT1G19100' => 'ath', 'AT4G24970' => 'ath', 'AT4G36270' => 'ath', 'AT4G36280' => 'ath', 'AT4G36290' => 'ath', 'AT5G13130' => 'ath', 'AT5G50780' => 'ath', 'ATR0582G266' => 'atr', 'ATR0661G195' => 'atr', 'ATR1152G031' => 'atr', 'Atru.chr11.2382' => 'acertr', 'Atru.chr12.2337' => 'acertr', 'Atru.chr3.744' => 'acertr', 'Atru.chr6.1870' => 'acertr', 'Atru.chr9.2515' => 'acertr', 'AUR62004120' => 'cqu', 'AUR62005667' => 'cqu', 'AUR62007634' => 'cqu', 'AUR62008186' => 'cqu', 'AUR62008187' => 'cqu', 'AUR62008188' => 'cqu', 'AUR62027954' => 'cqu', 'AUR62028766' => 'cqu', 'AUR62028767' => 'cqu', 'AUR62028768' => 'cqu', 'AUR62028886' => 'cqu', 'AUR62029563' => 'cqu', 'AUR62038832' => 'cqu', 'BcaB01g04149' => 'bca', 'BcaB03g12940' => 'bca', 'BcaB03g13090' => 'bca', 'BcaB03g14466' => 'bca', 'BcaB05g24035' => 'bca', 'BcaC01g06050' => 'bca', 'BcaC04g19148' => 'bca', 'BcaC04g20761' => 'bca', 'BcaC06g32845' => 'bca', 'BcaC07g41274' => 'bca', 'BcaC09g50827' => 'bca', 'BcaNung00741' => 'bca', 'BcaNung00742' => 'bca', 'BcaNung01859' => 'bca', 'BcaNung03985' => 'bca', 'BcaNung03989' => 'bca', 'BcaNung05661' => 'bca', 'BolC1t00257H' => 'bol', 'BolC1t01956H' => 'bol', 'BolC2t06534H' => 'bol', 'BolC3t14334H' => 'bol', 'BolC5t30451H' => 'bol', 'BolC7t45880H' => 'bol', 'BolC7t46586H' => 'bol', 'BolC8t49301H' => 'bol', 'BolC8t51837H' => 'bol', 'BolC9t56822H' => 'bol', 'BolC9t59235H' => 'bol', 'BraA01t00234Z' => 'bra', 'BraA01t01563Z' => 'bra', 'BraA02t05147Z' => 'bra', 'BraA03t10947Z' => 'bra', 'BraA03t14633Z' => 'bra', 'BraA08t35112Z' => 'bra', 'BraA09t41330Z' => 'bra', 'BraA10t44570Z' => 'bra', 'C01p02670' => 'bna', 'C01p20260' => 'bna', 'C02p05890' => 'bna', 'C03p19530' => 'bna', 'C05p17470' => 'bna', 'C07p53900' => 'bna', 'C07p61630' => 'bna', 'C08p16800' => 'bna', 'C08p42810' => 'bna', 'C09p39480' => 'bna', 'C09p63980' => 'bna', 'CAN.G1001.7' => 'can', 'CAN.G1034.55' => 'can', 'CAN.G143.7' => 'can', 'CAN.G3340.1' => 'can', 'CAN.G358.19' => 'can', 'CAN.G373.2' => 'can', 'CAN.G674.16' => 'can', 'CAN.G674.17' => 'can', 'CAN.G674.18' => 'can', 'CAN.G732.2' => 'can', 'CAN.G732.3' => 'can', 'CAN.G993.39' => 'can', 'CANSAT01G2052' => 'cansat', 'CANSAT80G0070' => 'cansat', 'CANSAT80G0483' => 'cansat', 'CANSAT80G0625' => 'cansat', 'CARHR019690' => 'chi', 'CARHR080280' => 'chi', 'CARHR152750' => 'chi', 'CARHR152760' => 'chi', 'CARHR152770' => 'chi', 'CARHR200340' => 'chi', 'CARHR232370' => 'chi', 'CARHR244670' => 'chi', 'CARHR244680' => 'chi', 'CARHR257520' => 'chi', 'Carub.0001s1872' => 'cru', 'Carub.0006s1130' => 'cru', 'Carub.0007s0396' => 'cru', 'Carub.0007s0397' => 'cru', 'Carub.0007s1608' => 'cru', 'Carub.0008s1068' => 'cru', 'Carub.0008s1077' => 'cru', 'Ca_16158_v3' => 'car', 'Ca_17571_v3' => 'car', 'Ca_21936_v3' => 'car', 'Ca_22350_v3' => 'car', 'CBR_g22445' => 'cbr', 'CBR_g26290' => 'cbr', 'Cc04_g09610' => 'ccan', 'Cc04_g12280' => 'ccan', 'Cc07_g10230' => 'ccan', 'CDE02G0093' => 'cde', 'CDE02G0701' => 'cde', 'CDE04G1050' => 'cde', 'CDE05G1833' => 'cde', 'CDE05G3058' => 'cde', 'CDE05G3380' => 'cde', 'CDE06G0536' => 'cde', 'Cfa006923' => 'cfa', 'Cfa009402' => 'cfa', 'Cfa018751' => 'cfa', 'Cfa019164' => 'cfa', 'Cfa022935' => 'cfa', 'Ciclev10019081m.g' => 'ccl', 'Ciclev10025076m.g' => 'ccl', 'Ciclev10030712m.g' => 'ccl', 'Ciclev10033760m.g' => 'ccl', 'CiPaw.05G105600' => 'cil', 'CiPaw.08G136700' => 'cil', 'CiPaw.11G003900' => 'cil', 'CiPaw.11G023700' => 'cil', 'CiPaw.12G003700' => 'cil', 'ClCG06G017100' => 'cla', 'ClCG06G018110' => 'cla', 'ClCG07G008800' => 'cla', 'ClCG07G015330' => 'cla', 'COL.COLO4_13698' => 'col', 'COL.COLO4_16659' => 'col', 'COL.COLO4_21986' => 'col', 'COL.COLO4_24049' => 'col', 'COL.COLO4_29061' => 'col', 'COL.COLO4_29075' => 'col', 'COL.COLO4_30094' => 'col', 'Cpa.g.c33689' => 'cpa', 'Cpa.g.sc108.39' => 'cpa', 'Cpa.g.sc108.41' => 'cpa', 'Cpa.g.sc1163.1' => 'cpa', 'Cpa.g.sc4.155' => 'cpa', 'Cpa.g.sc6.194' => 'cpa', 'CsaV3_1G000340' => 'csa', 'CsaV3_1G001400' => 'csa', 'CsaV3_4G002220' => 'csa', 'CsaV3_4G005370' => 'csa', 'CSS0007487' => 'camsi', 'CSS0008066' => 'camsi', 'CSS0009120' => 'camsi', 'CSS0015512' => 'camsi', 'CSS0022409' => 'camsi', 'CSS0025358' => 'camsi', 'CSS0044547' => 'camsi', 'DCAR_013057' => 'dca', 'DCAR_015058' => 'dca', 'DCAR_016027' => 'dca', 'DCAR_017327' => 'dca', 'DCAR_020743' => 'dca', 'DCAR_026157' => 'dca', 'DCAR_032339' => 'dca', 'DCAR_032340' => 'dca', 'Dinv11200' => 'din', 'Dinv11201' => 'din', 'Dinv20631' => 'din', 'Dinv23182' => 'din', 'Dinv33466' => 'din', 'Dinv33583' => 'din', 'Dinv38565' => 'din', 'Duzib068G0200' => 'dzi', 'Duzib147G0132' => 'dzi', 'Duzib147G0635' => 'dzi', 'Duzib205G1670' => 'dzi', 'Duzib251G0606' => 'dzi', 'ECA232G3336' => 'eca', 'ECA232G3763' => 'eca', 'ECA232G4845' => 'eca', 'ECA234G1607' => 'eca', 'ECA246G0932' => 'eca', 'ECA247G0781' => 'eca', 'ECA247G1932' => 'eca', 'ECA247G2079' => 'eca', 'ECA247G3338' => 'eca', 'ECA247G4115' => 'eca', 'EL10Ac3g06552' => 'bvu', 'EL10Ac5g10721' => 'bvu', 'EL10Ac5g10722' => 'bvu', 'EL10Ac5g10723' => 'bvu', 'EL10Ac5g11361' => 'bvu', 'EL10Ac6g13553' => 'bvu', 'EL10As8g23872' => 'bvu', 'Eucgr.B00250' => 'egr', 'Eucgr.B00251' => 'egr', 'Eucgr.B03533' => 'egr', 'Eucgr.I02381' => 'egr', 'Eucgr.K02700' => 'egr', 'FAN02G0174' => 'fan', 'FAN02G3146' => 'fan', 'FAN04G1672' => 'fan', 'FAN04G2273' => 'fan', 'FAN05G2791' => 'fan', 'FAN05G4035' => 'fan', 'FAN07G0834' => 'fan', 'FAN08G1198' => 'fan', 'FAN09G4182' => 'fan', 'FAN12G0496' => 'fan', 'FAN13G1027' => 'fan', 'FAN13G2951' => 'fan', 'FAN14G0705' => 'fan', 'FAN14G0720' => 'fan', 'FAN17G0201' => 'fan', 'FAN17G2665' => 'fan', 'FAN18G1456' => 'fan', 'FAN18G1525' => 'fan', 'FAN18G3500' => 'fan', 'FAN28G2670' => 'fan', 'FvH4_1g12391' => 'fve', 'FvH4_4g23220' => 'fve', 'FvH4_5g08810' => 'fve', 'FvH4_5g28960' => 'fve', 'FvH4_6g42820' => 'fve', 'FvH4_6g51110' => 'fve', 'Glyma.02G051802' => 'gma', 'Glyma.04G185300' => 'gma', 'Glyma.05G202900' => 'gma', 'Glyma.08G010300' => 'gma', 'Glyma.16G131900' => 'gma', 'Glyma.17G087900' => 'gma', 'Gohir.A07G048600' => 'ghi', 'Gohir.A11G179000' => 'ghi', 'Gohir.A12G140900' => 'ghi', 'Gohir.A12G140950' => 'ghi', 'Gohir.A12G191700' => 'ghi', 'Gohir.A13G086300' => 'ghi', 'Gohir.D07G052900' => 'ghi', 'Gohir.D11G186600' => 'ghi', 'Gohir.D12G145575' => 'ghi', 'Gohir.D12G145650' => 'ghi', 'Gohir.D12G145725' => 'ghi', 'Gohir.D12G194050' => 'ghi', 'Gohir.D13G091800' => 'ghi', 'Gorai.001G055900' => 'gra', 'Gorai.007G198400' => 'gra', 'Gorai.008G157000' => 'gra', 'Gorai.008G157100' => 'gra', 'Gorai.008G208700' => 'gra', 'Gorai.010G138700' => 'gra', 'GSVIVG01000977001' => 'vvi', 'GSVIVG01007708001' => 'vvi', 'GSVIVG01008587001' => 'vvi', 'GSVIVG01018849001' => 'vvi', 'GSVIVG01032432001' => 'vvi', 'HanXRQChr02g0034131' => 'han', 'HanXRQChr02g0035981' => 'han', 'HanXRQChr02g0035991' => 'han', 'HanXRQChr05g0155611' => 'han', 'HanXRQChr05g0155621' => 'han', 'HanXRQChr08g0236501' => 'han', 'HanXRQChr09g0261321' => 'han', 'HanXRQChr09g0272081' => 'han', 'HanXRQChr10g0310741' => 'han', 'HanXRQChr11g0325591' => 'han', 'HanXRQChr12g0385691' => 'han', 'HanXRQChr13g0387801' => 'han', 'HanXRQChr15g0463011' => 'han', 'Haze_03826' => 'cav', 'Haze_03827' => 'cav', 'Haze_07183' => 'cav', 'Haze_07537' => 'cav', 'Haze_07539' => 'cav', 'Haze_12461' => 'cav', 'Haze_16115' => 'cav', 'Haze_16808' => 'cav', 'Haze_18531' => 'cav', 'Hma1.2p1_0046F.1_g026700' => 'hma', 'Hma1.2p1_0046F.1_g026710' => 'hma', 'Hma1.2p1_0168F.1_g074340' => 'hma', 'Hma1.2p1_0266F.1_g107030' => 'hma', 'Hma1.2p1_0266F.1_g107060' => 'hma', 'Hma1.2p1_0275F.1_g110510' => 'hma', 'Hma1.2p1_0592F.1_g185490' => 'hma', 'Hma1.2p1_0592F.1_g185500' => 'hma', 'Hma1.2p1_0592F.1_g185510' => 'hma', 'Hma1.2p1_0592F.1_g185520' => 'hma', 'Hma1.2p1_0592F.1_g185530' => 'hma', 'Hma1.2p1_0818F.1_g223450' => 'hma', 'HPP92_009708' => 'vpl', 'HPP92_009793' => 'vpl', 'HPP92_009796' => 'vpl', 'HPP92_009797' => 'vpl', 'HPP92_014940' => 'vpl', 'HPP92_014988' => 'vpl', 'Hund02463' => 'sun', 'Hund02760' => 'sun', 'Hund05071' => 'sun', 'Hund10108' => 'sun', 'Hund11204' => 'sun', 'Hund14016' => 'sun', 'Hund16464' => 'sun', 'Lalb_Chr09g0333391' => 'lal', 'Lalb_Chr11g0070461' => 'lal', 'Lalb_Chr12g0201671' => 'lal', 'Lalb_Chr13g0297161' => 'lal', 'Lj1g0002823' => 'lja', 'Lj3C1074T6' => 'lonja', 'Lj4A212T28' => 'lonja', 'Lj4g0005516' => 'lja', 'Lj4g0013705' => 'lja', 'Lj4g0027865' => 'lja', 'Lj5C92G16' => 'lonja', 'Lj5C92T12' => 'lonja', 'Lj7C596T3' => 'lonja', 'Lj9A446G59' => 'lonja', 'Lj9A482G21' => 'lonja', 'Lsat_1_v5_gn_1_28261' => 'lsa', 'Lsat_1_v5_gn_1_28281' => 'lsa', 'Lsat_1_v5_gn_1_32721' => 'lsa', 'Lsat_1_v5_gn_4_151760' => 'lsa', 'Lsat_1_v5_gn_4_2120' => 'lsa', 'Lsat_1_v5_gn_4_75761' => 'lsa', 'Lsat_1_v5_gn_5_10920' => 'lsa', 'Manes.02G099900' => 'mes', 'Manes.11G096200' => 'mes', 'Manes.12G007200' => 'mes', 'Manes.14G048300' => 'mes', 'Manes.17G114700' => 'mes', 'Mapoly0002s0070' => 'mpo', 'Mapoly0029s0099' => 'mpo', 'MBI07_g24742_MAGBIO' => 'mbi', 'MBI10_g27988_MAGBIO' => 'mbi', 'MBI11_g13057_MAGBIO' => 'mbi', 'MD02G1137200' => 'mdo', 'MD06G1137200' => 'mdo', 'MD07G1122300' => 'mdo', 'MD09G1078200' => 'mdo', 'MD13G1123700' => 'mdo', 'MD14G1151900' => 'mdo', 'MD17G1030900' => 'mdo', 'MD17G1068200' => 'mdo', 'MD17G1068600' => 'mdo', 'Medtr3g077540' => 'mtr', 'Medtr4g105530' => 'mtr', 'Medtr8g076580' => 'mtr', 'Medtr8g076590' => 'mtr', 'Medtr8g096410' => 'mtr', 'MELO3C016411.2' => 'cme', 'MELO3C017780.2' => 'cme', 'MELO3C022560.2' => 'cme', 'MELO3C026187.2' => 'cme', 'MELO3C026286.2' => 'cme', 'MELO3C032854.2' => 'cme', 'Migut.H02495' => 'egut', 'Migut.I00561' => 'egut', 'Migut.K01015' => 'egut', 'Migut.K01016' => 'egut', 'Migut.L00743' => 'egut', 'Migut.L00744' => 'egut', 'Migut.L00746' => 'egut', 'Migut.L00798' => 'egut', 'Migut.L00799' => 'egut', 'Migut.N02096' => 'egut', 'MSTRG.11259' => 'ama', 'MSTRG.23142' => 'ama', 'MSTRG.2499' => 'ama', 'Nitab4.5_0000003g0730' => 'nta', 'Nitab4.5_0000137g0020' => 'nta', 'Nitab4.5_0000721g0210' => 'nta', 'Nitab4.5_0000723g0050' => 'nta', 'Nitab4.5_0000913g0070' => 'nta', 'Nitab4.5_0001332g0040' => 'nta', 'Nitab4.5_0001771g0050' => 'nta', 'Nitab4.5_0001918g0050' => 'nta', 'Nitab4.5_0002686g0030' => 'nta', 'Nitab4.5_0003156g0020' => 'nta', 'Nitab4.5_0003383g0040' => 'nta', 'Nitab4.5_0003918g0010' => 'nta', 'Nitab4.5_0006760g0010' => 'nta', 'Nn1g05981' => 'nnu', 'Nn1g06288' => 'nnu', 'Nn3g16371' => 'nnu', 'Nn3g16786' => 'nnu', 'Nn4g22232' => 'nnu', 'Oeu005144.1' => 'oeu', 'Oeu005145.1' => 'oeu', 'Oeu011348.1' => 'oeu', 'Oeu016415.1' => 'oeu', 'Oeu023501.1' => 'oeu', 'Oeu044473.1' => 'oeu', 'Oeu048892.2' => 'oeu', 'Os01g0549200' => 'osa', 'Os02g0469300' => 'osa', 'Os04g0311100' => 'osa', 'Os06g0474900' => 'osa', 'Os10g0181700' => 'osa', 'Os11g0454800' => 'osa', 'Peaxi162Scf00037g00714' => 'pax', 'Peaxi162Scf00084g01217' => 'pax', 'Peaxi162Scf00257g00217' => 'pax', 'Peaxi162Scf00516g00215' => 'pax', 'Peaxi162Scf00689g00123' => 'pax', 'PGR044G2719' => 'pgr', 'PGR083G1360' => 'pgr', 'PGR102G2849' => 'pgr', 'PGR119G2534' => 'pgr', 'PGSC0003DMG400003538' => 'stu', 'PGSC0003DMG400028138' => 'stu', 'PGSC0003DMG400031732' => 'stu', 'PGSC0003DMG400038165' => 'stu', 'Phvul.002G284600' => 'pvu', 'Phvul.003G258200' => 'pvu', 'Phvul.009G176500' => 'pvu', 'Potri.003G167201' => 'ptr', 'Potri.005G118400' => 'ptr', 'Potri.012G089000' => 'ptr', 'Potri.012G102800' => 'ptr', 'Potri.015G079400' => 'ptr', 'Potri.015G100900' => 'ptr', 'Pp3c14_9810' => 'ppa', 'Pp3c15_10450' => 'ppa', 'Pp3c20_19150' => 'ppa', 'Pp3c23_12740' => 'ppa', 'Pp3c23_6310' => 'ppa', 'Pp3c24_3720' => 'ppa', 'Pp3c27_2580' => 'ppa', 'Pp3c9_8990' => 'ppa', 'PRCOL_00002854' => 'pco', 'Prupe.1G221200' => 'ppe', 'Prupe.3G289000' => 'ppe', 'Prupe.5G147000' => 'ppe', 'Prupe.6G157300' => 'ppe', 'Prupe.7G163400' => 'ppe', 'Psat0s2177g0040' => 'psa', 'Psat3g174760' => 'psa', 'Psat3g192160' => 'psa', 'Psat4g058520' => 'psa', 'Psat4g096840' => 'psa', 'Psat7g037320' => 'psa', 'PSO017G1274' => 'pso', 'PSO017G5166' => 'pso', 'PSO063G4558' => 'pso', 'PSO170G4458' => 'pso', 'PSO170G5005' => 'pso', 'PSO210G6156' => 'pso', 'PSO210G6635' => 'pso', 'PSO210G7397' => 'pso', 'PSO210G7700' => 'pso', 'PSO455G0035' => 'pso', 'PSO455G0180' => 'pso', 'PSO478G4515' => 'pso', 'PSO832G1305' => 'pso', 'PSO832G3489' => 'pso', 'QL02p075247' => 'qlo', 'QL03p051148' => 'qlo', 'QL05p010313' => 'qlo', 'QL06p034627' => 'qlo', 'QL10p001889' => 'qlo', 'QL10p010846' => 'qlo', 'RcHm_v2.0_Chr1g0350621' => 'rch', 'RcHm_v2.0_Chr1g0350641' => 'rch', 'RcHm_v2.0_Chr2g0092891' => 'rch', 'RcHm_v2.0_Chr2g0100251' => 'rch', 'RcHm_v2.0_Chr2g0158661' => 'rch', 'RcHm_v2.0_Chr2g0172741' => 'rch', 'RcHm_v2.0_Chr4g0429571' => 'rch', 'RcHm_v2.0_Chr5g0042471' => 'rch', 'RcHm_v2.0_Chr7g0189451' => 'rch', 'Rhsim08G0052000' => 'rsi', 'Rhsim08G0174400' => 'rsi', 'Rhsim08G0193200' => 'rsi', 'Rhsim10G0214800' => 'rsi', 'Rhsim10G0214900' => 'rsi', 'Rhsim10G0215000' => 'rsi', 'Rhsim12G0022900' => 'rsi', 'Rhsim12G0177500' => 'rsi', 'Rhsim12G0177700' => 'rsi', 'Sabra03G0122600' => 'sbr', 'Sabra05G0097400' => 'sbr', 'Sabra12G0064100' => 'sbr', 'Sabra15G0121300' => 'sbr', 'SalBow2G0642' => 'sbo', 'SalBow5G2667' => 'sbo', 'SalBow5G4873' => 'sbo', 'SalBow8G2395' => 'sbo', 'Sc03g0003290' => 'sci', 'Sc10g0010130' => 'sci', 'Sc22g0003650' => 'sci', 'Sed0001603' => 'sed', 'Sed0004259' => 'sed', 'Sed0006789' => 'sed', 'Sed0011838' => 'sed', 'Sed0012964' => 'sed', 'Sed0016383' => 'sed', 'Sed0019010' => 'sed', 'Sed0020188' => 'sed', 'SEGI_04702' => 'sgi', 'SEGI_17231' => 'sgi', 'SEGI_18877' => 'sgi', 'SEGI_25196' => 'sgi', 'SEGI_25515' => 'sgi', 'SEGI_28445' => 'sgi', 'SEGI_37452' => 'sgi', 'SGA_v2.0_scaffold188G40336' => 'sas', 'SGA_v2.0_scaffold228G43247' => 'sas', 'SGA_v2.0_scaffold280G46853' => 'sas', 'SGA_v2.0_scaffold34G13808' => 'sas', 'SGA_v2.0_scaffold40G15576' => 'sas', 'SGA_v2.0_scaffold611G53188' => 'sas', 'SGA_v2.0_scaffold78G25461' => 'sas', 'SGA_v2.0_scaffold90G27888' => 'sas', 'SHI08601' => 'shi', 'SHI08606' => 'shi', 'SHI17117' => 'shi', 'SHI17119' => 'shi', 'SMO118G0201' => 'smo', 'SMO169G0247' => 'smo', 'SMO176G0006' => 'smo', 'SMO176G0015' => 'smo', 'SMO202G0006' => 'smo', 'SMO240G0050' => 'smo', 'SMO286G0009' => 'smo', 'SMO338G0033' => 'smo', 'SMO356G0533' => 'smo', 'SMO364G0382' => 'smo', 'SMO367G0166' => 'smo', 'SMO367G1098' => 'smo', 'Solyc01g009920.3' => 'sly', 'Solyc01g099300.3' => 'sly', 'Solyc02g084700.3' => 'sly', 'Solyc03g097520.3' => 'sly', 'Solyc06g071580.3' => 'sly', 'Solyc10g081760.3' => 'sly', 'Sopen01g005480' => 'spe', 'Sopen01g042850' => 'spe', 'Sopen02g029370' => 'spe', 'Sopen03g028280' => 'spe', 'Sopen06g027870' => 'spe', 'Sopen10g032270' => 'spe', 'Sp5g18180' => 'spa', 'Sp6g12880' => 'spa', 'Sp6g30850' => 'spa', 'Sp7g22960' => 'spa', 'Sp7g34010' => 'spa', 'SpUn1326_0010' => 'spa', 'TAR371G0242' => 'tar', 'TAR622G0638' => 'tar', 'TAR628G1548' => 'tar', 'TAR629G1079' => 'tar', 'TAR629G3413' => 'tar', 'THA.LOC104804249' => 'tha', 'THA.LOC104808315' => 'tha', 'THA.LOC104809238' => 'tha', 'THA.LOC104825484' => 'tha', 'Thecc.01G025500' => 'tca', 'Thecc.03G015800' => 'tca', 'Thecc.03G018000' => 'tca', 'Thecc.03G134800' => 'tca', 'Thecc.04G014700' => 'tca', 'Thhalv10006991m.g' => 'esa', 'Thhalv10012707m.g' => 'esa', 'Thhalv10015739m.g' => 'esa', 'Thhalv10024553m.g' => 'esa', 'Thhalv10024673m.g' => 'esa', 'Thhalv10029187m.g' => 'esa', 'TPR.G12971' => 'tpr', 'TPR.G29396' => 'tpr', 'TPR.G33376' => 'tpr', 'TPR.G35508' => 'tpr', 'TPR.G35516' => 'tpr', 'TPR.G37317' => 'tpr', 'TPR.G37389' => 'tpr', 'TPR.G37523' => 'tpr', 'TPR.G559' => 'tpr', 'TWI14G0070' => 'twi', 'TWI14G0729' => 'twi', 'TWI18G0596' => 'twi', 'TWI39G0780' => 'twi', 'TWI39G0850' => 'twi', 'TWI73G1052' => 'twi', 'unitig_52.g17485' => 'ugi', 'unitig_61.g26355' => 'ugi', 'vmacro01040' => 'vma', 'vmacro16731' => 'vma', 'vmacro18270' => 'vma', 'vmacro19142' => 'vma', 'vmacro19407' => 'vma', 'vmacro19408' => 'vma', 'vmacro21899' => 'vma', 'vmacro21900' => 'vma', 'vmacro21901' => 'vma', 'VMungo0251G0490' => 'vmu', 'VMungo0251G1748' => 'vmu', 'VMungo1309G0421' => 'vmu', 'Zm00001eb086500' => 'zma', 'Zm00001eb150680' => 'zma', 'Zm00001eb162330' => 'zma', 'Zm00001eb203130' => 'zma', 'Zm00001eb369480' => 'zma', 'Zm00001eb382340' => 'zma', 'Zm00001eb416360' => 'zma' ) $gf_id = 'HOM05D000902' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000902' ) $data_identifier = 'HOM05D000902' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 13, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 10, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 6, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 9, 'hma' => (int) 12, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 4, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 6, 'ppa' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 6, 'rch' => (int) 9, 'rsi' => (int) 9, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 12, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 3, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416360' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000902', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '663', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02470' => 'bna', 'A01p16260' => 'bna', 'A02p01680' => 'bna', 'A03p16600' => 'bna', 'A03p55660' => 'bna', 'A03p64160' => 'bna', 'A03p64170' => 'bna', 'A08p31900' => 'bna', 'A09p59530' => 'bna', 'A10p08230' => 'bna', 'A10p25090' => 'bna', 'Aa31LG3G7100' => 'aar', 'Aa31LG3G7110' => 'aar', 'Aa31LG6G13160' => 'aar', 'Aa31LG7G10770' => 'aar', 'Aa31LG7G3830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2723' => 'aag', 'Actinidia08045' => 'ach', 'Actinidia08888' => 'ach', 'Actinidia18333' => 'ach', 'Actinidia19334' => 'ach', 'Actinidia25552' => 'ach', 'Actinidia26089' => 'ach', 'Actinidia30615' => 'ach', 'Actinidia30616' => 'ach', 'Actinidia33083' => 'ach', 'Actinidia35762' => 'ach', 'Ah.02g110620' => 'amhyb', 'Ah.11g046390' => 'amhyb', 'AL1G31670' => 'aly', 'AL6G23730' => 'aly', 'AL7G14740' => 'aly', 'AL7G14750' => 'aly', 'AL7G14760' => 'aly', 'AL7G28220' => 'aly', 'AL8G24940' => 'aly', 'Aqoxy3G01665' => 'aox', 'Aqoxy3G02853' => 'aox', 'Aqoxy5G01513' => 'aox', 'Aqoxy5G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8SKA4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ75LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKDA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0LJZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7REX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZP4YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWX7I5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2QKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS0L9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPCD8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q161UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC7XCF' => 'arhy', 'AT1G19100' => 'ath', 'AT4G24970' => 'ath', 'AT4G36270' => 'ath', 'AT4G36280' => 'ath', 'AT4G36290' => 'ath', 'AT5G13130' => 'ath', 'AT5G50780' => 'ath', 'ATR0582G266' => 'atr', 'ATR0661G195' => 'atr', 'ATR1152G031' => 'atr', 'Atru.chr11.2382' => 'acertr', 'Atru.chr12.2337' => 'acertr', 'Atru.chr3.744' => 'acertr', 'Atru.chr6.1870' => 'acertr', 'Atru.chr9.2515' => 'acertr', 'AUR62004120' => 'cqu', 'AUR62005667' => 'cqu', 'AUR62007634' => 'cqu', 'AUR62008186' => 'cqu', 'AUR62008187' => 'cqu', 'AUR62008188' => 'cqu', 'AUR62027954' => 'cqu', 'AUR62028766' => 'cqu', 'AUR62028767' => 'cqu', 'AUR62028768' => 'cqu', 'AUR62028886' => 'cqu', 'AUR62029563' => 'cqu', 'AUR62038832' => 'cqu', 'BcaB01g04149' => 'bca', 'BcaB03g12940' => 'bca', 'BcaB03g13090' => 'bca', 'BcaB03g14466' => 'bca', 'BcaB05g24035' => 'bca', 'BcaC01g06050' => 'bca', 'BcaC04g19148' => 'bca', 'BcaC04g20761' => 'bca', 'BcaC06g32845' => 'bca', 'BcaC07g41274' => 'bca', 'BcaC09g50827' => 'bca', 'BcaNung00741' => 'bca', 'BcaNung00742' => 'bca', 'BcaNung01859' => 'bca', 'BcaNung03985' => 'bca', 'BcaNung03989' => 'bca', 'BcaNung05661' => 'bca', 'BolC1t00257H' => 'bol', 'BolC1t01956H' => 'bol', 'BolC2t06534H' => 'bol', 'BolC3t14334H' => 'bol', 'BolC5t30451H' => 'bol', 'BolC7t45880H' => 'bol', 'BolC7t46586H' => 'bol', 'BolC8t49301H' => 'bol', 'BolC8t51837H' => 'bol', 'BolC9t56822H' => 'bol', 'BolC9t59235H' => 'bol', 'BraA01t00234Z' => 'bra', 'BraA01t01563Z' => 'bra', 'BraA02t05147Z' => 'bra', 'BraA03t10947Z' => 'bra', 'BraA03t14633Z' => 'bra', 'BraA08t35112Z' => 'bra', 'BraA09t41330Z' => 'bra', 'BraA10t44570Z' => 'bra', 'C01p02670' => 'bna', 'C01p20260' => 'bna', 'C02p05890' => 'bna', 'C03p19530' => 'bna', 'C05p17470' => 'bna', 'C07p53900' => 'bna', 'C07p61630' => 'bna', 'C08p16800' => 'bna', 'C08p42810' => 'bna', 'C09p39480' => 'bna', 'C09p63980' => 'bna', 'CAN.G1001.7' => 'can', 'CAN.G1034.55' => 'can', 'CAN.G143.7' => 'can', 'CAN.G3340.1' => 'can', 'CAN.G358.19' => 'can', 'CAN.G373.2' => 'can', 'CAN.G674.16' => 'can', 'CAN.G674.17' => 'can', 'CAN.G674.18' => 'can', 'CAN.G732.2' => 'can', 'CAN.G732.3' => 'can', 'CAN.G993.39' => 'can', 'CANSAT01G2052' => 'cansat', 'CANSAT80G0070' => 'cansat', 'CANSAT80G0483' => 'cansat', 'CANSAT80G0625' => 'cansat', 'CARHR019690' => 'chi', 'CARHR080280' => 'chi', 'CARHR152750' => 'chi', 'CARHR152760' => 'chi', 'CARHR152770' => 'chi', 'CARHR200340' => 'chi', 'CARHR232370' => 'chi', 'CARHR244670' => 'chi', 'CARHR244680' => 'chi', 'CARHR257520' => 'chi', 'Carub.0001s1872' => 'cru', 'Carub.0006s1130' => 'cru', 'Carub.0007s0396' => 'cru', 'Carub.0007s0397' => 'cru', 'Carub.0007s1608' => 'cru', 'Carub.0008s1068' => 'cru', 'Carub.0008s1077' => 'cru', 'Ca_16158_v3' => 'car', 'Ca_17571_v3' => 'car', 'Ca_21936_v3' => 'car', 'Ca_22350_v3' => 'car', 'CBR_g22445' => 'cbr', 'CBR_g26290' => 'cbr', 'Cc04_g09610' => 'ccan', 'Cc04_g12280' => 'ccan', 'Cc07_g10230' => 'ccan', 'CDE02G0093' => 'cde', 'CDE02G0701' => 'cde', 'CDE04G1050' => 'cde', 'CDE05G1833' => 'cde', 'CDE05G3058' => 'cde', 'CDE05G3380' => 'cde', 'CDE06G0536' => 'cde', 'Cfa006923' => 'cfa', 'Cfa009402' => 'cfa', 'Cfa018751' => 'cfa', 'Cfa019164' => 'cfa', 'Cfa022935' => 'cfa', 'Ciclev10019081m.g' => 'ccl', 'Ciclev10025076m.g' => 'ccl', 'Ciclev10030712m.g' => 'ccl', 'Ciclev10033760m.g' => 'ccl', 'CiPaw.05G105600' => 'cil', 'CiPaw.08G136700' => 'cil', 'CiPaw.11G003900' => 'cil', 'CiPaw.11G023700' => 'cil', 'CiPaw.12G003700' => 'cil', 'ClCG06G017100' => 'cla', 'ClCG06G018110' => 'cla', 'ClCG07G008800' => 'cla', 'ClCG07G015330' => 'cla', 'COL.COLO4_13698' => 'col', 'COL.COLO4_16659' => 'col', 'COL.COLO4_21986' => 'col', 'COL.COLO4_24049' => 'col', 'COL.COLO4_29061' => 'col', 'COL.COLO4_29075' => 'col', 'COL.COLO4_30094' => 'col', 'Cpa.g.c33689' => 'cpa', 'Cpa.g.sc108.39' => 'cpa', 'Cpa.g.sc108.41' => 'cpa', 'Cpa.g.sc1163.1' => 'cpa', 'Cpa.g.sc4.155' => 'cpa', 'Cpa.g.sc6.194' => 'cpa', 'CsaV3_1G000340' => 'csa', 'CsaV3_1G001400' => 'csa', 'CsaV3_4G002220' => 'csa', 'CsaV3_4G005370' => 'csa', 'CSS0007487' => 'camsi', 'CSS0008066' => 'camsi', 'CSS0009120' => 'camsi', 'CSS0015512' => 'camsi', 'CSS0022409' => 'camsi', 'CSS0025358' => 'camsi', 'CSS0044547' => 'camsi', 'DCAR_013057' => 'dca', 'DCAR_015058' => 'dca', 'DCAR_016027' => 'dca', 'DCAR_017327' => 'dca', 'DCAR_020743' => 'dca', 'DCAR_026157' => 'dca', 'DCAR_032339' => 'dca', 'DCAR_032340' => 'dca', 'Dinv11200' => 'din', 'Dinv11201' => 'din', 'Dinv20631' => 'din', 'Dinv23182' => 'din', 'Dinv33466' => 'din', 'Dinv33583' => 'din', 'Dinv38565' => 'din', 'Duzib068G0200' => 'dzi', 'Duzib147G0132' => 'dzi', 'Duzib147G0635' => 'dzi', 'Duzib205G1670' => 'dzi', 'Duzib251G0606' => 'dzi', 'ECA232G3336' => 'eca', 'ECA232G3763' => 'eca', 'ECA232G4845' => 'eca', 'ECA234G1607' => 'eca', 'ECA246G0932' => 'eca', 'ECA247G0781' => 'eca', 'ECA247G1932' => 'eca', 'ECA247G2079' => 'eca', 'ECA247G3338' => 'eca', 'ECA247G4115' => 'eca', 'EL10Ac3g06552' => 'bvu', 'EL10Ac5g10721' => 'bvu', 'EL10Ac5g10722' => 'bvu', 'EL10Ac5g10723' => 'bvu', 'EL10Ac5g11361' => 'bvu', 'EL10Ac6g13553' => 'bvu', 'EL10As8g23872' => 'bvu', 'Eucgr.B00250' => 'egr', 'Eucgr.B00251' => 'egr', 'Eucgr.B03533' => 'egr', 'Eucgr.I02381' => 'egr', 'Eucgr.K02700' => 'egr', 'FAN02G0174' => 'fan', 'FAN02G3146' => 'fan', 'FAN04G1672' => 'fan', 'FAN04G2273' => 'fan', 'FAN05G2791' => 'fan', 'FAN05G4035' => 'fan', 'FAN07G0834' => 'fan', 'FAN08G1198' => 'fan', 'FAN09G4182' => 'fan', 'FAN12G0496' => 'fan', 'FAN13G1027' => 'fan', 'FAN13G2951' => 'fan', 'FAN14G0705' => 'fan', 'FAN14G0720' => 'fan', 'FAN17G0201' => 'fan', 'FAN17G2665' => 'fan', 'FAN18G1456' => 'fan', 'FAN18G1525' => 'fan', 'FAN18G3500' => 'fan', 'FAN28G2670' => 'fan', 'FvH4_1g12391' => 'fve', 'FvH4_4g23220' => 'fve', 'FvH4_5g08810' => 'fve', 'FvH4_5g28960' => 'fve', 'FvH4_6g42820' => 'fve', 'FvH4_6g51110' => 'fve', 'Glyma.02G051802' => 'gma', 'Glyma.04G185300' => 'gma', 'Glyma.05G202900' => 'gma', 'Glyma.08G010300' => 'gma', 'Glyma.16G131900' => 'gma', 'Glyma.17G087900' => 'gma', 'Gohir.A07G048600' => 'ghi', 'Gohir.A11G179000' => 'ghi', 'Gohir.A12G140900' => 'ghi', 'Gohir.A12G140950' => 'ghi', 'Gohir.A12G191700' => 'ghi', 'Gohir.A13G086300' => 'ghi', 'Gohir.D07G052900' => 'ghi', 'Gohir.D11G186600' => 'ghi', 'Gohir.D12G145575' => 'ghi', 'Gohir.D12G145650' => 'ghi', 'Gohir.D12G145725' => 'ghi', 'Gohir.D12G194050' => 'ghi', 'Gohir.D13G091800' => 'ghi', 'Gorai.001G055900' => 'gra', 'Gorai.007G198400' => 'gra', 'Gorai.008G157000' => 'gra', 'Gorai.008G157100' => 'gra', 'Gorai.008G208700' => 'gra', 'Gorai.010G138700' => 'gra', 'GSVIVG01000977001' => 'vvi', 'GSVIVG01007708001' => 'vvi', 'GSVIVG01008587001' => 'vvi', 'GSVIVG01018849001' => 'vvi', 'GSVIVG01032432001' => 'vvi', 'HanXRQChr02g0034131' => 'han', 'HanXRQChr02g0035981' => 'han', 'HanXRQChr02g0035991' => 'han', 'HanXRQChr05g0155611' => 'han', 'HanXRQChr05g0155621' => 'han', 'HanXRQChr08g0236501' => 'han', 'HanXRQChr09g0261321' => 'han', 'HanXRQChr09g0272081' => 'han', 'HanXRQChr10g0310741' => 'han', 'HanXRQChr11g0325591' => 'han', 'HanXRQChr12g0385691' => 'han', 'HanXRQChr13g0387801' => 'han', 'HanXRQChr15g0463011' => 'han', 'Haze_03826' => 'cav', 'Haze_03827' => 'cav', 'Haze_07183' => 'cav', 'Haze_07537' => 'cav', 'Haze_07539' => 'cav', 'Haze_12461' => 'cav', 'Haze_16115' => 'cav', 'Haze_16808' => 'cav', 'Haze_18531' => 'cav', 'Hma1.2p1_0046F.1_g026700' => 'hma', 'Hma1.2p1_0046F.1_g026710' => 'hma', 'Hma1.2p1_0168F.1_g074340' => 'hma', 'Hma1.2p1_0266F.1_g107030' => 'hma', 'Hma1.2p1_0266F.1_g107060' => 'hma', 'Hma1.2p1_0275F.1_g110510' => 'hma', 'Hma1.2p1_0592F.1_g185490' => 'hma', 'Hma1.2p1_0592F.1_g185500' => 'hma', 'Hma1.2p1_0592F.1_g185510' => 'hma', 'Hma1.2p1_0592F.1_g185520' => 'hma', 'Hma1.2p1_0592F.1_g185530' => 'hma', 'Hma1.2p1_0818F.1_g223450' => 'hma', 'HPP92_009708' => 'vpl', 'HPP92_009793' => 'vpl', 'HPP92_009796' => 'vpl', 'HPP92_009797' => 'vpl', 'HPP92_014940' => 'vpl', 'HPP92_014988' => 'vpl', 'Hund02463' => 'sun', 'Hund02760' => 'sun', 'Hund05071' => 'sun', 'Hund10108' => 'sun', 'Hund11204' => 'sun', 'Hund14016' => 'sun', 'Hund16464' => 'sun', 'Lalb_Chr09g0333391' => 'lal', 'Lalb_Chr11g0070461' => 'lal', 'Lalb_Chr12g0201671' => 'lal', 'Lalb_Chr13g0297161' => 'lal', 'Lj1g0002823' => 'lja', 'Lj3C1074T6' => 'lonja', 'Lj4A212T28' => 'lonja', 'Lj4g0005516' => 'lja', 'Lj4g0013705' => 'lja', 'Lj4g0027865' => 'lja', 'Lj5C92G16' => 'lonja', 'Lj5C92T12' => 'lonja', 'Lj7C596T3' => 'lonja', 'Lj9A446G59' => 'lonja', 'Lj9A482G21' => 'lonja', 'Lsat_1_v5_gn_1_28261' => 'lsa', 'Lsat_1_v5_gn_1_28281' => 'lsa', 'Lsat_1_v5_gn_1_32721' => 'lsa', 'Lsat_1_v5_gn_4_151760' => 'lsa', 'Lsat_1_v5_gn_4_2120' => 'lsa', 'Lsat_1_v5_gn_4_75761' => 'lsa', 'Lsat_1_v5_gn_5_10920' => 'lsa', 'Manes.02G099900' => 'mes', 'Manes.11G096200' => 'mes', 'Manes.12G007200' => 'mes', 'Manes.14G048300' => 'mes', 'Manes.17G114700' => 'mes', 'Mapoly0002s0070' => 'mpo', 'Mapoly0029s0099' => 'mpo', 'MBI07_g24742_MAGBIO' => 'mbi', 'MBI10_g27988_MAGBIO' => 'mbi', 'MBI11_g13057_MAGBIO' => 'mbi', 'MD02G1137200' => 'mdo', 'MD06G1137200' => 'mdo', 'MD07G1122300' => 'mdo', 'MD09G1078200' => 'mdo', 'MD13G1123700' => 'mdo', 'MD14G1151900' => 'mdo', 'MD17G1030900' => 'mdo', 'MD17G1068200' => 'mdo', 'MD17G1068600' => 'mdo', 'Medtr3g077540' => 'mtr', 'Medtr4g105530' => 'mtr', 'Medtr8g076580' => 'mtr', 'Medtr8g076590' => 'mtr', 'Medtr8g096410' => 'mtr', 'MELO3C016411.2' => 'cme', 'MELO3C017780.2' => 'cme', 'MELO3C022560.2' => 'cme', 'MELO3C026187.2' => 'cme', 'MELO3C026286.2' => 'cme', 'MELO3C032854.2' => 'cme', 'Migut.H02495' => 'egut', 'Migut.I00561' => 'egut', 'Migut.K01015' => 'egut', 'Migut.K01016' => 'egut', 'Migut.L00743' => 'egut', 'Migut.L00744' => 'egut', 'Migut.L00746' => 'egut', 'Migut.L00798' => 'egut', 'Migut.L00799' => 'egut', 'Migut.N02096' => 'egut', 'MSTRG.11259' => 'ama', 'MSTRG.23142' => 'ama', 'MSTRG.2499' => 'ama', 'Nitab4.5_0000003g0730' => 'nta', 'Nitab4.5_0000137g0020' => 'nta', 'Nitab4.5_0000721g0210' => 'nta', 'Nitab4.5_0000723g0050' => 'nta', 'Nitab4.5_0000913g0070' => 'nta', 'Nitab4.5_0001332g0040' => 'nta', 'Nitab4.5_0001771g0050' => 'nta', 'Nitab4.5_0001918g0050' => 'nta', 'Nitab4.5_0002686g0030' => 'nta', 'Nitab4.5_0003156g0020' => 'nta', 'Nitab4.5_0003383g0040' => 'nta', 'Nitab4.5_0003918g0010' => 'nta', 'Nitab4.5_0006760g0010' => 'nta', 'Nn1g05981' => 'nnu', 'Nn1g06288' => 'nnu', 'Nn3g16371' => 'nnu', 'Nn3g16786' => 'nnu', 'Nn4g22232' => 'nnu', 'Oeu005144.1' => 'oeu', 'Oeu005145.1' => 'oeu', 'Oeu011348.1' => 'oeu', 'Oeu016415.1' => 'oeu', 'Oeu023501.1' => 'oeu', 'Oeu044473.1' => 'oeu', 'Oeu048892.2' => 'oeu', 'Os01g0549200' => 'osa', 'Os02g0469300' => 'osa', 'Os04g0311100' => 'osa', 'Os06g0474900' => 'osa', 'Os10g0181700' => 'osa', 'Os11g0454800' => 'osa', 'Peaxi162Scf00037g00714' => 'pax', 'Peaxi162Scf00084g01217' => 'pax', 'Peaxi162Scf00257g00217' => 'pax', 'Peaxi162Scf00516g00215' => 'pax', 'Peaxi162Scf00689g00123' => 'pax', 'PGR044G2719' => 'pgr', 'PGR083G1360' => 'pgr', 'PGR102G2849' => 'pgr', 'PGR119G2534' => 'pgr', 'PGSC0003DMG400003538' => 'stu', 'PGSC0003DMG400028138' => 'stu', 'PGSC0003DMG400031732' => 'stu', 'PGSC0003DMG400038165' => 'stu', 'Phvul.002G284600' => 'pvu', 'Phvul.003G258200' => 'pvu', 'Phvul.009G176500' => 'pvu', 'Potri.003G167201' => 'ptr', 'Potri.005G118400' => 'ptr', 'Potri.012G089000' => 'ptr', 'Potri.012G102800' => 'ptr', 'Potri.015G079400' => 'ptr', 'Potri.015G100900' => 'ptr', 'Pp3c14_9810' => 'ppa', 'Pp3c15_10450' => 'ppa', 'Pp3c20_19150' => 'ppa', 'Pp3c23_12740' => 'ppa', 'Pp3c23_6310' => 'ppa', 'Pp3c24_3720' => 'ppa', 'Pp3c27_2580' => 'ppa', 'Pp3c9_8990' => 'ppa', 'PRCOL_00002854' => 'pco', 'Prupe.1G221200' => 'ppe', 'Prupe.3G289000' => 'ppe', 'Prupe.5G147000' => 'ppe', 'Prupe.6G157300' => 'ppe', 'Prupe.7G163400' => 'ppe', 'Psat0s2177g0040' => 'psa', 'Psat3g174760' => 'psa', 'Psat3g192160' => 'psa', 'Psat4g058520' => 'psa', 'Psat4g096840' => 'psa', 'Psat7g037320' => 'psa', 'PSO017G1274' => 'pso', 'PSO017G5166' => 'pso', 'PSO063G4558' => 'pso', 'PSO170G4458' => 'pso', 'PSO170G5005' => 'pso', 'PSO210G6156' => 'pso', 'PSO210G6635' => 'pso', 'PSO210G7397' => 'pso', 'PSO210G7700' => 'pso', 'PSO455G0035' => 'pso', 'PSO455G0180' => 'pso', 'PSO478G4515' => 'pso', 'PSO832G1305' => 'pso', 'PSO832G3489' => 'pso', 'QL02p075247' => 'qlo', 'QL03p051148' => 'qlo', 'QL05p010313' => 'qlo', 'QL06p034627' => 'qlo', 'QL10p001889' => 'qlo', 'QL10p010846' => 'qlo', 'RcHm_v2.0_Chr1g0350621' => 'rch', 'RcHm_v2.0_Chr1g0350641' => 'rch', 'RcHm_v2.0_Chr2g0092891' => 'rch', 'RcHm_v2.0_Chr2g0100251' => 'rch', 'RcHm_v2.0_Chr2g0158661' => 'rch', 'RcHm_v2.0_Chr2g0172741' => 'rch', 'RcHm_v2.0_Chr4g0429571' => 'rch', 'RcHm_v2.0_Chr5g0042471' => 'rch', 'RcHm_v2.0_Chr7g0189451' => 'rch', 'Rhsim08G0052000' => 'rsi', 'Rhsim08G0174400' => 'rsi', 'Rhsim08G0193200' => 'rsi', 'Rhsim10G0214800' => 'rsi', 'Rhsim10G0214900' => 'rsi', 'Rhsim10G0215000' => 'rsi', 'Rhsim12G0022900' => 'rsi', 'Rhsim12G0177500' => 'rsi', 'Rhsim12G0177700' => 'rsi', 'Sabra03G0122600' => 'sbr', 'Sabra05G0097400' => 'sbr', 'Sabra12G0064100' => 'sbr', 'Sabra15G0121300' => 'sbr', 'SalBow2G0642' => 'sbo', 'SalBow5G2667' => 'sbo', 'SalBow5G4873' => 'sbo', 'SalBow8G2395' => 'sbo', 'Sc03g0003290' => 'sci', 'Sc10g0010130' => 'sci', 'Sc22g0003650' => 'sci', 'Sed0001603' => 'sed', 'Sed0004259' => 'sed', 'Sed0006789' => 'sed', 'Sed0011838' => 'sed', 'Sed0012964' => 'sed', 'Sed0016383' => 'sed', 'Sed0019010' => 'sed', 'Sed0020188' => 'sed', 'SEGI_04702' => 'sgi', 'SEGI_17231' => 'sgi', 'SEGI_18877' => 'sgi', 'SEGI_25196' => 'sgi', 'SEGI_25515' => 'sgi', 'SEGI_28445' => 'sgi', 'SEGI_37452' => 'sgi', 'SGA_v2.0_scaffold188G40336' => 'sas', 'SGA_v2.0_scaffold228G43247' => 'sas', 'SGA_v2.0_scaffold280G46853' => 'sas', 'SGA_v2.0_scaffold34G13808' => 'sas', 'SGA_v2.0_scaffold40G15576' => 'sas', 'SGA_v2.0_scaffold611G53188' => 'sas', 'SGA_v2.0_scaffold78G25461' => 'sas', 'SGA_v2.0_scaffold90G27888' => 'sas', 'SHI08601' => 'shi', 'SHI08606' => 'shi', 'SHI17117' => 'shi', 'SHI17119' => 'shi', 'SMO118G0201' => 'smo', 'SMO169G0247' => 'smo', 'SMO176G0006' => 'smo', 'SMO176G0015' => 'smo', 'SMO202G0006' => 'smo', 'SMO240G0050' => 'smo', 'SMO286G0009' => 'smo', 'SMO338G0033' => 'smo', 'SMO356G0533' => 'smo', 'SMO364G0382' => 'smo', 'SMO367G0166' => 'smo', 'SMO367G1098' => 'smo', 'Solyc01g009920.3' => 'sly', 'Solyc01g099300.3' => 'sly', 'Solyc02g084700.3' => 'sly', 'Solyc03g097520.3' => 'sly', 'Solyc06g071580.3' => 'sly', 'Solyc10g081760.3' => 'sly', 'Sopen01g005480' => 'spe', 'Sopen01g042850' => 'spe', 'Sopen02g029370' => 'spe', 'Sopen03g028280' => 'spe', 'Sopen06g027870' => 'spe', 'Sopen10g032270' => 'spe', 'Sp5g18180' => 'spa', 'Sp6g12880' => 'spa', 'Sp6g30850' => 'spa', 'Sp7g22960' => 'spa', 'Sp7g34010' => 'spa', 'SpUn1326_0010' => 'spa', 'TAR371G0242' => 'tar', 'TAR622G0638' => 'tar', 'TAR628G1548' => 'tar', 'TAR629G1079' => 'tar', 'TAR629G3413' => 'tar', 'THA.LOC104804249' => 'tha', 'THA.LOC104808315' => 'tha', 'THA.LOC104809238' => 'tha', 'THA.LOC104825484' => 'tha', 'Thecc.01G025500' => 'tca', 'Thecc.03G015800' => 'tca', 'Thecc.03G018000' => 'tca', 'Thecc.03G134800' => 'tca', 'Thecc.04G014700' => 'tca', 'Thhalv10006991m.g' => 'esa', 'Thhalv10012707m.g' => 'esa', 'Thhalv10015739m.g' => 'esa', 'Thhalv10024553m.g' => 'esa', 'Thhalv10024673m.g' => 'esa', 'Thhalv10029187m.g' => 'esa', 'TPR.G12971' => 'tpr', 'TPR.G29396' => 'tpr', 'TPR.G33376' => 'tpr', 'TPR.G35508' => 'tpr', 'TPR.G35516' => 'tpr', 'TPR.G37317' => 'tpr', 'TPR.G37389' => 'tpr', 'TPR.G37523' => 'tpr', 'TPR.G559' => 'tpr', 'TWI14G0070' => 'twi', 'TWI14G0729' => 'twi', 'TWI18G0596' => 'twi', 'TWI39G0780' => 'twi', 'TWI39G0850' => 'twi', 'TWI73G1052' => 'twi', 'unitig_52.g17485' => 'ugi', 'unitig_61.g26355' => 'ugi', 'vmacro01040' => 'vma', 'vmacro16731' => 'vma', 'vmacro18270' => 'vma', 'vmacro19142' => 'vma', 'vmacro19407' => 'vma', 'vmacro19408' => 'vma', 'vmacro21899' => 'vma', 'vmacro21900' => 'vma', 'vmacro21901' => 'vma', 'VMungo0251G0490' => 'vmu', 'VMungo0251G1748' => 'vmu', 'VMungo1309G0421' => 'vmu', 'Zm00001eb086500' => 'zma', 'Zm00001eb150680' => 'zma', 'Zm00001eb162330' => 'zma', 'Zm00001eb203130' => 'zma', 'Zm00001eb369480' => 'zma', 'Zm00001eb382340' => 'zma', 'Zm00001eb416360' => 'zma' ), 'gf_id' => 'HOM05D000902', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000902' ), 'data_identifier' => 'HOM05D000902', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000902', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '663', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02470' => 'bna', 'A01p16260' => 'bna', 'A02p01680' => 'bna', 'A03p16600' => 'bna', 'A03p55660' => 'bna', 'A03p64160' => 'bna', 'A03p64170' => 'bna', 'A08p31900' => 'bna', 'A09p59530' => 'bna', 'A10p08230' => 'bna', 'A10p25090' => 'bna', 'Aa31LG3G7100' => 'aar', 'Aa31LG3G7110' => 'aar', 'Aa31LG6G13160' => 'aar', 'Aa31LG7G10770' => 'aar', 'Aa31LG7G3830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2723' => 'aag', 'Actinidia08045' => 'ach', 'Actinidia08888' => 'ach', 'Actinidia18333' => 'ach', 'Actinidia19334' => 'ach', 'Actinidia25552' => 'ach', 'Actinidia26089' => 'ach', 'Actinidia30615' => 'ach', 'Actinidia30616' => 'ach', 'Actinidia33083' => 'ach', 'Actinidia35762' => 'ach', 'Ah.02g110620' => 'amhyb', 'Ah.11g046390' => 'amhyb', 'AL1G31670' => 'aly', 'AL6G23730' => 'aly', 'AL7G14740' => 'aly', 'AL7G14750' => 'aly', 'AL7G14760' => 'aly', 'AL7G28220' => 'aly', 'AL8G24940' => 'aly', 'Aqoxy3G01665' => 'aox', 'Aqoxy3G02853' => 'aox', 'Aqoxy5G01513' => 'aox', 'Aqoxy5G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8SKA4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ75LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKDA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0LJZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7REX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZP4YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWX7I5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2QKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS0L9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPCD8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q161UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC7XCF' => 'arhy', 'AT1G19100' => 'ath', 'AT4G24970' => 'ath', 'AT4G36270' => 'ath', 'AT4G36280' => 'ath', 'AT4G36290' => 'ath', 'AT5G13130' => 'ath', 'AT5G50780' => 'ath', 'ATR0582G266' => 'atr', 'ATR0661G195' => 'atr', 'ATR1152G031' => 'atr', 'Atru.chr11.2382' => 'acertr', 'Atru.chr12.2337' => 'acertr', 'Atru.chr3.744' => 'acertr', 'Atru.chr6.1870' => 'acertr', 'Atru.chr9.2515' => 'acertr', 'AUR62004120' => 'cqu', 'AUR62005667' => 'cqu', 'AUR62007634' => 'cqu', 'AUR62008186' => 'cqu', 'AUR62008187' => 'cqu', 'AUR62008188' => 'cqu', 'AUR62027954' => 'cqu', 'AUR62028766' => 'cqu', 'AUR62028767' => 'cqu', 'AUR62028768' => 'cqu', 'AUR62028886' => 'cqu', 'AUR62029563' => 'cqu', 'AUR62038832' => 'cqu', 'BcaB01g04149' => 'bca', 'BcaB03g12940' => 'bca', 'BcaB03g13090' => 'bca', 'BcaB03g14466' => 'bca', 'BcaB05g24035' => 'bca', 'BcaC01g06050' => 'bca', 'BcaC04g19148' => 'bca', 'BcaC04g20761' => 'bca', 'BcaC06g32845' => 'bca', 'BcaC07g41274' => 'bca', 'BcaC09g50827' => 'bca', 'BcaNung00741' => 'bca', 'BcaNung00742' => 'bca', 'BcaNung01859' => 'bca', 'BcaNung03985' => 'bca', 'BcaNung03989' => 'bca', 'BcaNung05661' => 'bca', 'BolC1t00257H' => 'bol', 'BolC1t01956H' => 'bol', 'BolC2t06534H' => 'bol', 'BolC3t14334H' => 'bol', 'BolC5t30451H' => 'bol', 'BolC7t45880H' => 'bol', 'BolC7t46586H' => 'bol', 'BolC8t49301H' => 'bol', 'BolC8t51837H' => 'bol', 'BolC9t56822H' => 'bol', 'BolC9t59235H' => 'bol', 'BraA01t00234Z' => 'bra', 'BraA01t01563Z' => 'bra', 'BraA02t05147Z' => 'bra', 'BraA03t10947Z' => 'bra', 'BraA03t14633Z' => 'bra', 'BraA08t35112Z' => 'bra', 'BraA09t41330Z' => 'bra', 'BraA10t44570Z' => 'bra', 'C01p02670' => 'bna', 'C01p20260' => 'bna', 'C02p05890' => 'bna', 'C03p19530' => 'bna', 'C05p17470' => 'bna', 'C07p53900' => 'bna', 'C07p61630' => 'bna', 'C08p16800' => 'bna', 'C08p42810' => 'bna', 'C09p39480' => 'bna', 'C09p63980' => 'bna', 'CAN.G1001.7' => 'can', 'CAN.G1034.55' => 'can', 'CAN.G143.7' => 'can', 'CAN.G3340.1' => 'can', 'CAN.G358.19' => 'can', 'CAN.G373.2' => 'can', 'CAN.G674.16' => 'can', 'CAN.G674.17' => 'can', 'CAN.G674.18' => 'can', 'CAN.G732.2' => 'can', 'CAN.G732.3' => 'can', 'CAN.G993.39' => 'can', 'CANSAT01G2052' => 'cansat', 'CANSAT80G0070' => 'cansat', 'CANSAT80G0483' => 'cansat', 'CANSAT80G0625' => 'cansat', 'CARHR019690' => 'chi', 'CARHR080280' => 'chi', 'CARHR152750' => 'chi', 'CARHR152760' => 'chi', 'CARHR152770' => 'chi', 'CARHR200340' => 'chi', 'CARHR232370' => 'chi', 'CARHR244670' => 'chi', 'CARHR244680' => 'chi', 'CARHR257520' => 'chi', 'Carub.0001s1872' => 'cru', 'Carub.0006s1130' => 'cru', 'Carub.0007s0396' => 'cru', 'Carub.0007s0397' => 'cru', 'Carub.0007s1608' => 'cru', 'Carub.0008s1068' => 'cru', 'Carub.0008s1077' => 'cru', 'Ca_16158_v3' => 'car', 'Ca_17571_v3' => 'car', 'Ca_21936_v3' => 'car', 'Ca_22350_v3' => 'car', 'CBR_g22445' => 'cbr', 'CBR_g26290' => 'cbr', 'Cc04_g09610' => 'ccan', 'Cc04_g12280' => 'ccan', 'Cc07_g10230' => 'ccan', 'CDE02G0093' => 'cde', 'CDE02G0701' => 'cde', 'CDE04G1050' => 'cde', 'CDE05G1833' => 'cde', 'CDE05G3058' => 'cde', 'CDE05G3380' => 'cde', 'CDE06G0536' => 'cde', 'Cfa006923' => 'cfa', 'Cfa009402' => 'cfa', 'Cfa018751' => 'cfa', 'Cfa019164' => 'cfa', 'Cfa022935' => 'cfa', 'Ciclev10019081m.g' => 'ccl', 'Ciclev10025076m.g' => 'ccl', 'Ciclev10030712m.g' => 'ccl', 'Ciclev10033760m.g' => 'ccl', 'CiPaw.05G105600' => 'cil', 'CiPaw.08G136700' => 'cil', 'CiPaw.11G003900' => 'cil', 'CiPaw.11G023700' => 'cil', 'CiPaw.12G003700' => 'cil', 'ClCG06G017100' => 'cla', 'ClCG06G018110' => 'cla', 'ClCG07G008800' => 'cla', 'ClCG07G015330' => 'cla', 'COL.COLO4_13698' => 'col', 'COL.COLO4_16659' => 'col', 'COL.COLO4_21986' => 'col', 'COL.COLO4_24049' => 'col', 'COL.COLO4_29061' => 'col', 'COL.COLO4_29075' => 'col', 'COL.COLO4_30094' => 'col', 'Cpa.g.c33689' => 'cpa', 'Cpa.g.sc108.39' => 'cpa', 'Cpa.g.sc108.41' => 'cpa', 'Cpa.g.sc1163.1' => 'cpa', 'Cpa.g.sc4.155' => 'cpa', 'Cpa.g.sc6.194' => 'cpa', 'CsaV3_1G000340' => 'csa', 'CsaV3_1G001400' => 'csa', 'CsaV3_4G002220' => 'csa', 'CsaV3_4G005370' => 'csa', 'CSS0007487' => 'camsi', 'CSS0008066' => 'camsi', 'CSS0009120' => 'camsi', 'CSS0015512' => 'camsi', 'CSS0022409' => 'camsi', 'CSS0025358' => 'camsi', 'CSS0044547' => 'camsi', 'DCAR_013057' => 'dca', 'DCAR_015058' => 'dca', 'DCAR_016027' => 'dca', 'DCAR_017327' => 'dca', 'DCAR_020743' => 'dca', 'DCAR_026157' => 'dca', 'DCAR_032339' => 'dca', 'DCAR_032340' => 'dca', 'Dinv11200' => 'din', 'Dinv11201' => 'din', 'Dinv20631' => 'din', 'Dinv23182' => 'din', 'Dinv33466' => 'din', 'Dinv33583' => 'din', 'Dinv38565' => 'din', 'Duzib068G0200' => 'dzi', 'Duzib147G0132' => 'dzi', 'Duzib147G0635' => 'dzi', 'Duzib205G1670' => 'dzi', 'Duzib251G0606' => 'dzi', 'ECA232G3336' => 'eca', 'ECA232G3763' => 'eca', 'ECA232G4845' => 'eca', 'ECA234G1607' => 'eca', 'ECA246G0932' => 'eca', 'ECA247G0781' => 'eca', 'ECA247G1932' => 'eca', 'ECA247G2079' => 'eca', 'ECA247G3338' => 'eca', 'ECA247G4115' => 'eca', 'EL10Ac3g06552' => 'bvu', 'EL10Ac5g10721' => 'bvu', 'EL10Ac5g10722' => 'bvu', 'EL10Ac5g10723' => 'bvu', 'EL10Ac5g11361' => 'bvu', 'EL10Ac6g13553' => 'bvu', 'EL10As8g23872' => 'bvu', 'Eucgr.B00250' => 'egr', 'Eucgr.B00251' => 'egr', 'Eucgr.B03533' => 'egr', 'Eucgr.I02381' => 'egr', 'Eucgr.K02700' => 'egr', 'FAN02G0174' => 'fan', 'FAN02G3146' => 'fan', 'FAN04G1672' => 'fan', 'FAN04G2273' => 'fan', 'FAN05G2791' => 'fan', 'FAN05G4035' => 'fan', 'FAN07G0834' => 'fan', 'FAN08G1198' => 'fan', 'FAN09G4182' => 'fan', 'FAN12G0496' => 'fan', 'FAN13G1027' => 'fan', 'FAN13G2951' => 'fan', 'FAN14G0705' => 'fan', 'FAN14G0720' => 'fan', 'FAN17G0201' => 'fan', 'FAN17G2665' => 'fan', 'FAN18G1456' => 'fan', 'FAN18G1525' => 'fan', 'FAN18G3500' => 'fan', 'FAN28G2670' => 'fan', 'FvH4_1g12391' => 'fve', 'FvH4_4g23220' => 'fve', 'FvH4_5g08810' => 'fve', 'FvH4_5g28960' => 'fve', 'FvH4_6g42820' => 'fve', 'FvH4_6g51110' => 'fve', 'Glyma.02G051802' => 'gma', 'Glyma.04G185300' => 'gma', 'Glyma.05G202900' => 'gma', 'Glyma.08G010300' => 'gma', 'Glyma.16G131900' => 'gma', 'Glyma.17G087900' => 'gma', 'Gohir.A07G048600' => 'ghi', 'Gohir.A11G179000' => 'ghi', 'Gohir.A12G140900' => 'ghi', 'Gohir.A12G140950' => 'ghi', 'Gohir.A12G191700' => 'ghi', 'Gohir.A13G086300' => 'ghi', 'Gohir.D07G052900' => 'ghi', 'Gohir.D11G186600' => 'ghi', 'Gohir.D12G145575' => 'ghi', 'Gohir.D12G145650' => 'ghi', 'Gohir.D12G145725' => 'ghi', 'Gohir.D12G194050' => 'ghi', 'Gohir.D13G091800' => 'ghi', 'Gorai.001G055900' => 'gra', 'Gorai.007G198400' => 'gra', 'Gorai.008G157000' => 'gra', 'Gorai.008G157100' => 'gra', 'Gorai.008G208700' => 'gra', 'Gorai.010G138700' => 'gra', 'GSVIVG01000977001' => 'vvi', 'GSVIVG01007708001' => 'vvi', 'GSVIVG01008587001' => 'vvi', 'GSVIVG01018849001' => 'vvi', 'GSVIVG01032432001' => 'vvi', 'HanXRQChr02g0034131' => 'han', 'HanXRQChr02g0035981' => 'han', 'HanXRQChr02g0035991' => 'han', 'HanXRQChr05g0155611' => 'han', 'HanXRQChr05g0155621' => 'han', 'HanXRQChr08g0236501' => 'han', 'HanXRQChr09g0261321' => 'han', 'HanXRQChr09g0272081' => 'han', 'HanXRQChr10g0310741' => 'han', 'HanXRQChr11g0325591' => 'han', 'HanXRQChr12g0385691' => 'han', 'HanXRQChr13g0387801' => 'han', 'HanXRQChr15g0463011' => 'han', 'Haze_03826' => 'cav', 'Haze_03827' => 'cav', 'Haze_07183' => 'cav', 'Haze_07537' => 'cav', 'Haze_07539' => 'cav', 'Haze_12461' => 'cav', 'Haze_16115' => 'cav', 'Haze_16808' => 'cav', 'Haze_18531' => 'cav', 'Hma1.2p1_0046F.1_g026700' => 'hma', 'Hma1.2p1_0046F.1_g026710' => 'hma', 'Hma1.2p1_0168F.1_g074340' => 'hma', 'Hma1.2p1_0266F.1_g107030' => 'hma', 'Hma1.2p1_0266F.1_g107060' => 'hma', 'Hma1.2p1_0275F.1_g110510' => 'hma', 'Hma1.2p1_0592F.1_g185490' => 'hma', 'Hma1.2p1_0592F.1_g185500' => 'hma', 'Hma1.2p1_0592F.1_g185510' => 'hma', 'Hma1.2p1_0592F.1_g185520' => 'hma', 'Hma1.2p1_0592F.1_g185530' => 'hma', 'Hma1.2p1_0818F.1_g223450' => 'hma', 'HPP92_009708' => 'vpl', 'HPP92_009793' => 'vpl', 'HPP92_009796' => 'vpl', 'HPP92_009797' => 'vpl', 'HPP92_014940' => 'vpl', 'HPP92_014988' => 'vpl', 'Hund02463' => 'sun', 'Hund02760' => 'sun', 'Hund05071' => 'sun', 'Hund10108' => 'sun', 'Hund11204' => 'sun', 'Hund14016' => 'sun', 'Hund16464' => 'sun', 'Lalb_Chr09g0333391' => 'lal', 'Lalb_Chr11g0070461' => 'lal', 'Lalb_Chr12g0201671' => 'lal', 'Lalb_Chr13g0297161' => 'lal', 'Lj1g0002823' => 'lja', 'Lj3C1074T6' => 'lonja', 'Lj4A212T28' => 'lonja', 'Lj4g0005516' => 'lja', 'Lj4g0013705' => 'lja', 'Lj4g0027865' => 'lja', 'Lj5C92G16' => 'lonja', 'Lj5C92T12' => 'lonja', 'Lj7C596T3' => 'lonja', 'Lj9A446G59' => 'lonja', 'Lj9A482G21' => 'lonja', 'Lsat_1_v5_gn_1_28261' => 'lsa', 'Lsat_1_v5_gn_1_28281' => 'lsa', 'Lsat_1_v5_gn_1_32721' => 'lsa', 'Lsat_1_v5_gn_4_151760' => 'lsa', 'Lsat_1_v5_gn_4_2120' => 'lsa', 'Lsat_1_v5_gn_4_75761' => 'lsa', 'Lsat_1_v5_gn_5_10920' => 'lsa', 'Manes.02G099900' => 'mes', 'Manes.11G096200' => 'mes', 'Manes.12G007200' => 'mes', 'Manes.14G048300' => 'mes', 'Manes.17G114700' => 'mes', 'Mapoly0002s0070' => 'mpo', 'Mapoly0029s0099' => 'mpo', 'MBI07_g24742_MAGBIO' => 'mbi', 'MBI10_g27988_MAGBIO' => 'mbi', 'MBI11_g13057_MAGBIO' => 'mbi', 'MD02G1137200' => 'mdo', 'MD06G1137200' => 'mdo', 'MD07G1122300' => 'mdo', 'MD09G1078200' => 'mdo', 'MD13G1123700' => 'mdo', 'MD14G1151900' => 'mdo', 'MD17G1030900' => 'mdo', 'MD17G1068200' => 'mdo', 'MD17G1068600' => 'mdo', 'Medtr3g077540' => 'mtr', 'Medtr4g105530' => 'mtr', 'Medtr8g076580' => 'mtr', 'Medtr8g076590' => 'mtr', 'Medtr8g096410' => 'mtr', 'MELO3C016411.2' => 'cme', 'MELO3C017780.2' => 'cme', 'MELO3C022560.2' => 'cme', 'MELO3C026187.2' => 'cme', 'MELO3C026286.2' => 'cme', 'MELO3C032854.2' => 'cme', 'Migut.H02495' => 'egut', 'Migut.I00561' => 'egut', 'Migut.K01015' => 'egut', 'Migut.K01016' => 'egut', 'Migut.L00743' => 'egut', 'Migut.L00744' => 'egut', 'Migut.L00746' => 'egut', 'Migut.L00798' => 'egut', 'Migut.L00799' => 'egut', 'Migut.N02096' => 'egut', 'MSTRG.11259' => 'ama', 'MSTRG.23142' => 'ama', 'MSTRG.2499' => 'ama', 'Nitab4.5_0000003g0730' => 'nta', 'Nitab4.5_0000137g0020' => 'nta', 'Nitab4.5_0000721g0210' => 'nta', 'Nitab4.5_0000723g0050' => 'nta', 'Nitab4.5_0000913g0070' => 'nta', 'Nitab4.5_0001332g0040' => 'nta', 'Nitab4.5_0001771g0050' => 'nta', 'Nitab4.5_0001918g0050' => 'nta', 'Nitab4.5_0002686g0030' => 'nta', 'Nitab4.5_0003156g0020' => 'nta', 'Nitab4.5_0003383g0040' => 'nta', 'Nitab4.5_0003918g0010' => 'nta', 'Nitab4.5_0006760g0010' => 'nta', 'Nn1g05981' => 'nnu', 'Nn1g06288' => 'nnu', 'Nn3g16371' => 'nnu', 'Nn3g16786' => 'nnu', 'Nn4g22232' => 'nnu', 'Oeu005144.1' => 'oeu', 'Oeu005145.1' => 'oeu', 'Oeu011348.1' => 'oeu', 'Oeu016415.1' => 'oeu', 'Oeu023501.1' => 'oeu', 'Oeu044473.1' => 'oeu', 'Oeu048892.2' => 'oeu', 'Os01g0549200' => 'osa', 'Os02g0469300' => 'osa', 'Os04g0311100' => 'osa', 'Os06g0474900' => 'osa', 'Os10g0181700' => 'osa', 'Os11g0454800' => 'osa', 'Peaxi162Scf00037g00714' => 'pax', 'Peaxi162Scf00084g01217' => 'pax', 'Peaxi162Scf00257g00217' => 'pax', 'Peaxi162Scf00516g00215' => 'pax', 'Peaxi162Scf00689g00123' => 'pax', 'PGR044G2719' => 'pgr', 'PGR083G1360' => 'pgr', 'PGR102G2849' => 'pgr', 'PGR119G2534' => 'pgr', 'PGSC0003DMG400003538' => 'stu', 'PGSC0003DMG400028138' => 'stu', 'PGSC0003DMG400031732' => 'stu', 'PGSC0003DMG400038165' => 'stu', 'Phvul.002G284600' => 'pvu', 'Phvul.003G258200' => 'pvu', 'Phvul.009G176500' => 'pvu', 'Potri.003G167201' => 'ptr', 'Potri.005G118400' => 'ptr', 'Potri.012G089000' => 'ptr', 'Potri.012G102800' => 'ptr', 'Potri.015G079400' => 'ptr', 'Potri.015G100900' => 'ptr', 'Pp3c14_9810' => 'ppa', 'Pp3c15_10450' => 'ppa', 'Pp3c20_19150' => 'ppa', 'Pp3c23_12740' => 'ppa', 'Pp3c23_6310' => 'ppa', 'Pp3c24_3720' => 'ppa', 'Pp3c27_2580' => 'ppa', 'Pp3c9_8990' => 'ppa', 'PRCOL_00002854' => 'pco', 'Prupe.1G221200' => 'ppe', 'Prupe.3G289000' => 'ppe', 'Prupe.5G147000' => 'ppe', 'Prupe.6G157300' => 'ppe', 'Prupe.7G163400' => 'ppe', 'Psat0s2177g0040' => 'psa', 'Psat3g174760' => 'psa', 'Psat3g192160' => 'psa', 'Psat4g058520' => 'psa', 'Psat4g096840' => 'psa', 'Psat7g037320' => 'psa', 'PSO017G1274' => 'pso', 'PSO017G5166' => 'pso', 'PSO063G4558' => 'pso', 'PSO170G4458' => 'pso', 'PSO170G5005' => 'pso', 'PSO210G6156' => 'pso', 'PSO210G6635' => 'pso', 'PSO210G7397' => 'pso', 'PSO210G7700' => 'pso', 'PSO455G0035' => 'pso', 'PSO455G0180' => 'pso', 'PSO478G4515' => 'pso', 'PSO832G1305' => 'pso', 'PSO832G3489' => 'pso', 'QL02p075247' => 'qlo', 'QL03p051148' => 'qlo', 'QL05p010313' => 'qlo', 'QL06p034627' => 'qlo', 'QL10p001889' => 'qlo', 'QL10p010846' => 'qlo', 'RcHm_v2.0_Chr1g0350621' => 'rch', 'RcHm_v2.0_Chr1g0350641' => 'rch', 'RcHm_v2.0_Chr2g0092891' => 'rch', 'RcHm_v2.0_Chr2g0100251' => 'rch', 'RcHm_v2.0_Chr2g0158661' => 'rch', 'RcHm_v2.0_Chr2g0172741' => 'rch', 'RcHm_v2.0_Chr4g0429571' => 'rch', 'RcHm_v2.0_Chr5g0042471' => 'rch', 'RcHm_v2.0_Chr7g0189451' => 'rch', 'Rhsim08G0052000' => 'rsi', 'Rhsim08G0174400' => 'rsi', 'Rhsim08G0193200' => 'rsi', 'Rhsim10G0214800' => 'rsi', 'Rhsim10G0214900' => 'rsi', 'Rhsim10G0215000' => 'rsi', 'Rhsim12G0022900' => 'rsi', 'Rhsim12G0177500' => 'rsi', 'Rhsim12G0177700' => 'rsi', 'Sabra03G0122600' => 'sbr', 'Sabra05G0097400' => 'sbr', 'Sabra12G0064100' => 'sbr', 'Sabra15G0121300' => 'sbr', 'SalBow2G0642' => 'sbo', 'SalBow5G2667' => 'sbo', 'SalBow5G4873' => 'sbo', 'SalBow8G2395' => 'sbo', 'Sc03g0003290' => 'sci', 'Sc10g0010130' => 'sci', 'Sc22g0003650' => 'sci', 'Sed0001603' => 'sed', 'Sed0004259' => 'sed', 'Sed0006789' => 'sed', 'Sed0011838' => 'sed', 'Sed0012964' => 'sed', 'Sed0016383' => 'sed', 'Sed0019010' => 'sed', 'Sed0020188' => 'sed', 'SEGI_04702' => 'sgi', 'SEGI_17231' => 'sgi', 'SEGI_18877' => 'sgi', 'SEGI_25196' => 'sgi', 'SEGI_25515' => 'sgi', 'SEGI_28445' => 'sgi', 'SEGI_37452' => 'sgi', 'SGA_v2.0_scaffold188G40336' => 'sas', 'SGA_v2.0_scaffold228G43247' => 'sas', 'SGA_v2.0_scaffold280G46853' => 'sas', 'SGA_v2.0_scaffold34G13808' => 'sas', 'SGA_v2.0_scaffold40G15576' => 'sas', 'SGA_v2.0_scaffold611G53188' => 'sas', 'SGA_v2.0_scaffold78G25461' => 'sas', 'SGA_v2.0_scaffold90G27888' => 'sas', 'SHI08601' => 'shi', 'SHI08606' => 'shi', 'SHI17117' => 'shi', 'SHI17119' => 'shi', 'SMO118G0201' => 'smo', 'SMO169G0247' => 'smo', 'SMO176G0006' => 'smo', 'SMO176G0015' => 'smo', 'SMO202G0006' => 'smo', 'SMO240G0050' => 'smo', 'SMO286G0009' => 'smo', 'SMO338G0033' => 'smo', 'SMO356G0533' => 'smo', 'SMO364G0382' => 'smo', 'SMO367G0166' => 'smo', 'SMO367G1098' => 'smo', 'Solyc01g009920.3' => 'sly', 'Solyc01g099300.3' => 'sly', 'Solyc02g084700.3' => 'sly', 'Solyc03g097520.3' => 'sly', 'Solyc06g071580.3' => 'sly', 'Solyc10g081760.3' => 'sly', 'Sopen01g005480' => 'spe', 'Sopen01g042850' => 'spe', 'Sopen02g029370' => 'spe', 'Sopen03g028280' => 'spe', 'Sopen06g027870' => 'spe', 'Sopen10g032270' => 'spe', 'Sp5g18180' => 'spa', 'Sp6g12880' => 'spa', 'Sp6g30850' => 'spa', 'Sp7g22960' => 'spa', 'Sp7g34010' => 'spa', 'SpUn1326_0010' => 'spa', 'TAR371G0242' => 'tar', 'TAR622G0638' => 'tar', 'TAR628G1548' => 'tar', 'TAR629G1079' => 'tar', 'TAR629G3413' => 'tar', 'THA.LOC104804249' => 'tha', 'THA.LOC104808315' => 'tha', 'THA.LOC104809238' => 'tha', 'THA.LOC104825484' => 'tha', 'Thecc.01G025500' => 'tca', 'Thecc.03G015800' => 'tca', 'Thecc.03G018000' => 'tca', 'Thecc.03G134800' => 'tca', 'Thecc.04G014700' => 'tca', 'Thhalv10006991m.g' => 'esa', 'Thhalv10012707m.g' => 'esa', 'Thhalv10015739m.g' => 'esa', 'Thhalv10024553m.g' => 'esa', 'Thhalv10024673m.g' => 'esa', 'Thhalv10029187m.g' => 'esa', 'TPR.G12971' => 'tpr', 'TPR.G29396' => 'tpr', 'TPR.G33376' => 'tpr', 'TPR.G35508' => 'tpr', 'TPR.G35516' => 'tpr', 'TPR.G37317' => 'tpr', 'TPR.G37389' => 'tpr', 'TPR.G37523' => 'tpr', 'TPR.G559' => 'tpr', 'TWI14G0070' => 'twi', 'TWI14G0729' => 'twi', 'TWI18G0596' => 'twi', 'TWI39G0780' => 'twi', 'TWI39G0850' => 'twi', 'TWI73G1052' => 'twi', 'unitig_52.g17485' => 'ugi', 'unitig_61.g26355' => 'ugi', 'vmacro01040' => 'vma', 'vmacro16731' => 'vma', 'vmacro18270' => 'vma', 'vmacro19142' => 'vma', 'vmacro19407' => 'vma', 'vmacro19408' => 'vma', 'vmacro21899' => 'vma', 'vmacro21900' => 'vma', 'vmacro21901' => 'vma', 'VMungo0251G0490' => 'vmu', 'VMungo0251G1748' => 'vmu', 'VMungo1309G0421' => 'vmu', 'Zm00001eb086500' => 'zma', 'Zm00001eb150680' => 'zma', 'Zm00001eb162330' => 'zma', 'Zm00001eb203130' => 'zma', 'Zm00001eb369480' => 'zma', 'Zm00001eb382340' => 'zma', 'Zm00001eb416360' => 'zma' ) $gf_id = 'HOM05D000902' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000902' ) $data_identifier = 'HOM05D000902' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 13, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 10, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 6, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 9, 'hma' => (int) 12, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 4, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 6, 'ppa' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 6, 'rch' => (int) 9, 'rsi' => (int) 9, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 12, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 3, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416360' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000902', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '663', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02470' => 'bna', 'A01p16260' => 'bna', 'A02p01680' => 'bna', 'A03p16600' => 'bna', 'A03p55660' => 'bna', 'A03p64160' => 'bna', 'A03p64170' => 'bna', 'A08p31900' => 'bna', 'A09p59530' => 'bna', 'A10p08230' => 'bna', 'A10p25090' => 'bna', 'Aa31LG3G7100' => 'aar', 'Aa31LG3G7110' => 'aar', 'Aa31LG6G13160' => 'aar', 'Aa31LG7G10770' => 'aar', 'Aa31LG7G3830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2723' => 'aag', 'Actinidia08045' => 'ach', 'Actinidia08888' => 'ach', 'Actinidia18333' => 'ach', 'Actinidia19334' => 'ach', 'Actinidia25552' => 'ach', 'Actinidia26089' => 'ach', 'Actinidia30615' => 'ach', 'Actinidia30616' => 'ach', 'Actinidia33083' => 'ach', 'Actinidia35762' => 'ach', 'Ah.02g110620' => 'amhyb', 'Ah.11g046390' => 'amhyb', 'AL1G31670' => 'aly', 'AL6G23730' => 'aly', 'AL7G14740' => 'aly', 'AL7G14750' => 'aly', 'AL7G14760' => 'aly', 'AL7G28220' => 'aly', 'AL8G24940' => 'aly', 'Aqoxy3G01665' => 'aox', 'Aqoxy3G02853' => 'aox', 'Aqoxy5G01513' => 'aox', 'Aqoxy5G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8SKA4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ75LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKDA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0LJZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7REX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZP4YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWX7I5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2QKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS0L9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPCD8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q161UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC7XCF' => 'arhy', 'AT1G19100' => 'ath', 'AT4G24970' => 'ath', 'AT4G36270' => 'ath', 'AT4G36280' => 'ath', 'AT4G36290' => 'ath', 'AT5G13130' => 'ath', 'AT5G50780' => 'ath', 'ATR0582G266' => 'atr', 'ATR0661G195' => 'atr', 'ATR1152G031' => 'atr', 'Atru.chr11.2382' => 'acertr', 'Atru.chr12.2337' => 'acertr', 'Atru.chr3.744' => 'acertr', 'Atru.chr6.1870' => 'acertr', 'Atru.chr9.2515' => 'acertr', 'AUR62004120' => 'cqu', 'AUR62005667' => 'cqu', 'AUR62007634' => 'cqu', 'AUR62008186' => 'cqu', 'AUR62008187' => 'cqu', 'AUR62008188' => 'cqu', 'AUR62027954' => 'cqu', 'AUR62028766' => 'cqu', 'AUR62028767' => 'cqu', 'AUR62028768' => 'cqu', 'AUR62028886' => 'cqu', 'AUR62029563' => 'cqu', 'AUR62038832' => 'cqu', 'BcaB01g04149' => 'bca', 'BcaB03g12940' => 'bca', 'BcaB03g13090' => 'bca', 'BcaB03g14466' => 'bca', 'BcaB05g24035' => 'bca', 'BcaC01g06050' => 'bca', 'BcaC04g19148' => 'bca', 'BcaC04g20761' => 'bca', 'BcaC06g32845' => 'bca', 'BcaC07g41274' => 'bca', 'BcaC09g50827' => 'bca', 'BcaNung00741' => 'bca', 'BcaNung00742' => 'bca', 'BcaNung01859' => 'bca', 'BcaNung03985' => 'bca', 'BcaNung03989' => 'bca', 'BcaNung05661' => 'bca', 'BolC1t00257H' => 'bol', 'BolC1t01956H' => 'bol', 'BolC2t06534H' => 'bol', 'BolC3t14334H' => 'bol', 'BolC5t30451H' => 'bol', 'BolC7t45880H' => 'bol', 'BolC7t46586H' => 'bol', 'BolC8t49301H' => 'bol', 'BolC8t51837H' => 'bol', 'BolC9t56822H' => 'bol', 'BolC9t59235H' => 'bol', 'BraA01t00234Z' => 'bra', 'BraA01t01563Z' => 'bra', 'BraA02t05147Z' => 'bra', 'BraA03t10947Z' => 'bra', 'BraA03t14633Z' => 'bra', 'BraA08t35112Z' => 'bra', 'BraA09t41330Z' => 'bra', 'BraA10t44570Z' => 'bra', 'C01p02670' => 'bna', 'C01p20260' => 'bna', 'C02p05890' => 'bna', 'C03p19530' => 'bna', 'C05p17470' => 'bna', 'C07p53900' => 'bna', 'C07p61630' => 'bna', 'C08p16800' => 'bna', 'C08p42810' => 'bna', 'C09p39480' => 'bna', 'C09p63980' => 'bna', 'CAN.G1001.7' => 'can', 'CAN.G1034.55' => 'can', 'CAN.G143.7' => 'can', 'CAN.G3340.1' => 'can', 'CAN.G358.19' => 'can', 'CAN.G373.2' => 'can', 'CAN.G674.16' => 'can', 'CAN.G674.17' => 'can', 'CAN.G674.18' => 'can', 'CAN.G732.2' => 'can', 'CAN.G732.3' => 'can', 'CAN.G993.39' => 'can', 'CANSAT01G2052' => 'cansat', 'CANSAT80G0070' => 'cansat', 'CANSAT80G0483' => 'cansat', 'CANSAT80G0625' => 'cansat', 'CARHR019690' => 'chi', 'CARHR080280' => 'chi', 'CARHR152750' => 'chi', 'CARHR152760' => 'chi', 'CARHR152770' => 'chi', 'CARHR200340' => 'chi', 'CARHR232370' => 'chi', 'CARHR244670' => 'chi', 'CARHR244680' => 'chi', 'CARHR257520' => 'chi', 'Carub.0001s1872' => 'cru', 'Carub.0006s1130' => 'cru', 'Carub.0007s0396' => 'cru', 'Carub.0007s0397' => 'cru', 'Carub.0007s1608' => 'cru', 'Carub.0008s1068' => 'cru', 'Carub.0008s1077' => 'cru', 'Ca_16158_v3' => 'car', 'Ca_17571_v3' => 'car', 'Ca_21936_v3' => 'car', 'Ca_22350_v3' => 'car', 'CBR_g22445' => 'cbr', 'CBR_g26290' => 'cbr', 'Cc04_g09610' => 'ccan', 'Cc04_g12280' => 'ccan', 'Cc07_g10230' => 'ccan', 'CDE02G0093' => 'cde', 'CDE02G0701' => 'cde', 'CDE04G1050' => 'cde', 'CDE05G1833' => 'cde', 'CDE05G3058' => 'cde', 'CDE05G3380' => 'cde', 'CDE06G0536' => 'cde', 'Cfa006923' => 'cfa', 'Cfa009402' => 'cfa', 'Cfa018751' => 'cfa', 'Cfa019164' => 'cfa', 'Cfa022935' => 'cfa', 'Ciclev10019081m.g' => 'ccl', 'Ciclev10025076m.g' => 'ccl', 'Ciclev10030712m.g' => 'ccl', 'Ciclev10033760m.g' => 'ccl', 'CiPaw.05G105600' => 'cil', 'CiPaw.08G136700' => 'cil', 'CiPaw.11G003900' => 'cil', 'CiPaw.11G023700' => 'cil', 'CiPaw.12G003700' => 'cil', 'ClCG06G017100' => 'cla', 'ClCG06G018110' => 'cla', 'ClCG07G008800' => 'cla', 'ClCG07G015330' => 'cla', 'COL.COLO4_13698' => 'col', 'COL.COLO4_16659' => 'col', 'COL.COLO4_21986' => 'col', 'COL.COLO4_24049' => 'col', 'COL.COLO4_29061' => 'col', 'COL.COLO4_29075' => 'col', 'COL.COLO4_30094' => 'col', 'Cpa.g.c33689' => 'cpa', 'Cpa.g.sc108.39' => 'cpa', 'Cpa.g.sc108.41' => 'cpa', 'Cpa.g.sc1163.1' => 'cpa', 'Cpa.g.sc4.155' => 'cpa', 'Cpa.g.sc6.194' => 'cpa', 'CsaV3_1G000340' => 'csa', 'CsaV3_1G001400' => 'csa', 'CsaV3_4G002220' => 'csa', 'CsaV3_4G005370' => 'csa', 'CSS0007487' => 'camsi', 'CSS0008066' => 'camsi', 'CSS0009120' => 'camsi', 'CSS0015512' => 'camsi', 'CSS0022409' => 'camsi', 'CSS0025358' => 'camsi', 'CSS0044547' => 'camsi', 'DCAR_013057' => 'dca', 'DCAR_015058' => 'dca', 'DCAR_016027' => 'dca', 'DCAR_017327' => 'dca', 'DCAR_020743' => 'dca', 'DCAR_026157' => 'dca', 'DCAR_032339' => 'dca', 'DCAR_032340' => 'dca', 'Dinv11200' => 'din', 'Dinv11201' => 'din', 'Dinv20631' => 'din', 'Dinv23182' => 'din', 'Dinv33466' => 'din', 'Dinv33583' => 'din', 'Dinv38565' => 'din', 'Duzib068G0200' => 'dzi', 'Duzib147G0132' => 'dzi', 'Duzib147G0635' => 'dzi', 'Duzib205G1670' => 'dzi', 'Duzib251G0606' => 'dzi', 'ECA232G3336' => 'eca', 'ECA232G3763' => 'eca', 'ECA232G4845' => 'eca', 'ECA234G1607' => 'eca', 'ECA246G0932' => 'eca', 'ECA247G0781' => 'eca', 'ECA247G1932' => 'eca', 'ECA247G2079' => 'eca', 'ECA247G3338' => 'eca', 'ECA247G4115' => 'eca', 'EL10Ac3g06552' => 'bvu', 'EL10Ac5g10721' => 'bvu', 'EL10Ac5g10722' => 'bvu', 'EL10Ac5g10723' => 'bvu', 'EL10Ac5g11361' => 'bvu', 'EL10Ac6g13553' => 'bvu', 'EL10As8g23872' => 'bvu', 'Eucgr.B00250' => 'egr', 'Eucgr.B00251' => 'egr', 'Eucgr.B03533' => 'egr', 'Eucgr.I02381' => 'egr', 'Eucgr.K02700' => 'egr', 'FAN02G0174' => 'fan', 'FAN02G3146' => 'fan', 'FAN04G1672' => 'fan', 'FAN04G2273' => 'fan', 'FAN05G2791' => 'fan', 'FAN05G4035' => 'fan', 'FAN07G0834' => 'fan', 'FAN08G1198' => 'fan', 'FAN09G4182' => 'fan', 'FAN12G0496' => 'fan', 'FAN13G1027' => 'fan', 'FAN13G2951' => 'fan', 'FAN14G0705' => 'fan', 'FAN14G0720' => 'fan', 'FAN17G0201' => 'fan', 'FAN17G2665' => 'fan', 'FAN18G1456' => 'fan', 'FAN18G1525' => 'fan', 'FAN18G3500' => 'fan', 'FAN28G2670' => 'fan', 'FvH4_1g12391' => 'fve', 'FvH4_4g23220' => 'fve', 'FvH4_5g08810' => 'fve', 'FvH4_5g28960' => 'fve', 'FvH4_6g42820' => 'fve', 'FvH4_6g51110' => 'fve', 'Glyma.02G051802' => 'gma', 'Glyma.04G185300' => 'gma', 'Glyma.05G202900' => 'gma', 'Glyma.08G010300' => 'gma', 'Glyma.16G131900' => 'gma', 'Glyma.17G087900' => 'gma', 'Gohir.A07G048600' => 'ghi', 'Gohir.A11G179000' => 'ghi', 'Gohir.A12G140900' => 'ghi', 'Gohir.A12G140950' => 'ghi', 'Gohir.A12G191700' => 'ghi', 'Gohir.A13G086300' => 'ghi', 'Gohir.D07G052900' => 'ghi', 'Gohir.D11G186600' => 'ghi', 'Gohir.D12G145575' => 'ghi', 'Gohir.D12G145650' => 'ghi', 'Gohir.D12G145725' => 'ghi', 'Gohir.D12G194050' => 'ghi', 'Gohir.D13G091800' => 'ghi', 'Gorai.001G055900' => 'gra', 'Gorai.007G198400' => 'gra', 'Gorai.008G157000' => 'gra', 'Gorai.008G157100' => 'gra', 'Gorai.008G208700' => 'gra', 'Gorai.010G138700' => 'gra', 'GSVIVG01000977001' => 'vvi', 'GSVIVG01007708001' => 'vvi', 'GSVIVG01008587001' => 'vvi', 'GSVIVG01018849001' => 'vvi', 'GSVIVG01032432001' => 'vvi', 'HanXRQChr02g0034131' => 'han', 'HanXRQChr02g0035981' => 'han', 'HanXRQChr02g0035991' => 'han', 'HanXRQChr05g0155611' => 'han', 'HanXRQChr05g0155621' => 'han', 'HanXRQChr08g0236501' => 'han', 'HanXRQChr09g0261321' => 'han', 'HanXRQChr09g0272081' => 'han', 'HanXRQChr10g0310741' => 'han', 'HanXRQChr11g0325591' => 'han', 'HanXRQChr12g0385691' => 'han', 'HanXRQChr13g0387801' => 'han', 'HanXRQChr15g0463011' => 'han', 'Haze_03826' => 'cav', 'Haze_03827' => 'cav', 'Haze_07183' => 'cav', 'Haze_07537' => 'cav', 'Haze_07539' => 'cav', 'Haze_12461' => 'cav', 'Haze_16115' => 'cav', 'Haze_16808' => 'cav', 'Haze_18531' => 'cav', 'Hma1.2p1_0046F.1_g026700' => 'hma', 'Hma1.2p1_0046F.1_g026710' => 'hma', 'Hma1.2p1_0168F.1_g074340' => 'hma', 'Hma1.2p1_0266F.1_g107030' => 'hma', 'Hma1.2p1_0266F.1_g107060' => 'hma', 'Hma1.2p1_0275F.1_g110510' => 'hma', 'Hma1.2p1_0592F.1_g185490' => 'hma', 'Hma1.2p1_0592F.1_g185500' => 'hma', 'Hma1.2p1_0592F.1_g185510' => 'hma', 'Hma1.2p1_0592F.1_g185520' => 'hma', 'Hma1.2p1_0592F.1_g185530' => 'hma', 'Hma1.2p1_0818F.1_g223450' => 'hma', 'HPP92_009708' => 'vpl', 'HPP92_009793' => 'vpl', 'HPP92_009796' => 'vpl', 'HPP92_009797' => 'vpl', 'HPP92_014940' => 'vpl', 'HPP92_014988' => 'vpl', 'Hund02463' => 'sun', 'Hund02760' => 'sun', 'Hund05071' => 'sun', 'Hund10108' => 'sun', 'Hund11204' => 'sun', 'Hund14016' => 'sun', 'Hund16464' => 'sun', 'Lalb_Chr09g0333391' => 'lal', 'Lalb_Chr11g0070461' => 'lal', 'Lalb_Chr12g0201671' => 'lal', 'Lalb_Chr13g0297161' => 'lal', 'Lj1g0002823' => 'lja', 'Lj3C1074T6' => 'lonja', 'Lj4A212T28' => 'lonja', 'Lj4g0005516' => 'lja', 'Lj4g0013705' => 'lja', 'Lj4g0027865' => 'lja', 'Lj5C92G16' => 'lonja', 'Lj5C92T12' => 'lonja', 'Lj7C596T3' => 'lonja', 'Lj9A446G59' => 'lonja', 'Lj9A482G21' => 'lonja', 'Lsat_1_v5_gn_1_28261' => 'lsa', 'Lsat_1_v5_gn_1_28281' => 'lsa', 'Lsat_1_v5_gn_1_32721' => 'lsa', 'Lsat_1_v5_gn_4_151760' => 'lsa', 'Lsat_1_v5_gn_4_2120' => 'lsa', 'Lsat_1_v5_gn_4_75761' => 'lsa', 'Lsat_1_v5_gn_5_10920' => 'lsa', 'Manes.02G099900' => 'mes', 'Manes.11G096200' => 'mes', 'Manes.12G007200' => 'mes', 'Manes.14G048300' => 'mes', 'Manes.17G114700' => 'mes', 'Mapoly0002s0070' => 'mpo', 'Mapoly0029s0099' => 'mpo', 'MBI07_g24742_MAGBIO' => 'mbi', 'MBI10_g27988_MAGBIO' => 'mbi', 'MBI11_g13057_MAGBIO' => 'mbi', 'MD02G1137200' => 'mdo', 'MD06G1137200' => 'mdo', 'MD07G1122300' => 'mdo', 'MD09G1078200' => 'mdo', 'MD13G1123700' => 'mdo', 'MD14G1151900' => 'mdo', 'MD17G1030900' => 'mdo', 'MD17G1068200' => 'mdo', 'MD17G1068600' => 'mdo', 'Medtr3g077540' => 'mtr', 'Medtr4g105530' => 'mtr', 'Medtr8g076580' => 'mtr', 'Medtr8g076590' => 'mtr', 'Medtr8g096410' => 'mtr', 'MELO3C016411.2' => 'cme', 'MELO3C017780.2' => 'cme', 'MELO3C022560.2' => 'cme', 'MELO3C026187.2' => 'cme', 'MELO3C026286.2' => 'cme', 'MELO3C032854.2' => 'cme', 'Migut.H02495' => 'egut', 'Migut.I00561' => 'egut', 'Migut.K01015' => 'egut', 'Migut.K01016' => 'egut', 'Migut.L00743' => 'egut', 'Migut.L00744' => 'egut', 'Migut.L00746' => 'egut', 'Migut.L00798' => 'egut', 'Migut.L00799' => 'egut', 'Migut.N02096' => 'egut', 'MSTRG.11259' => 'ama', 'MSTRG.23142' => 'ama', 'MSTRG.2499' => 'ama', 'Nitab4.5_0000003g0730' => 'nta', 'Nitab4.5_0000137g0020' => 'nta', 'Nitab4.5_0000721g0210' => 'nta', 'Nitab4.5_0000723g0050' => 'nta', 'Nitab4.5_0000913g0070' => 'nta', 'Nitab4.5_0001332g0040' => 'nta', 'Nitab4.5_0001771g0050' => 'nta', 'Nitab4.5_0001918g0050' => 'nta', 'Nitab4.5_0002686g0030' => 'nta', 'Nitab4.5_0003156g0020' => 'nta', 'Nitab4.5_0003383g0040' => 'nta', 'Nitab4.5_0003918g0010' => 'nta', 'Nitab4.5_0006760g0010' => 'nta', 'Nn1g05981' => 'nnu', 'Nn1g06288' => 'nnu', 'Nn3g16371' => 'nnu', 'Nn3g16786' => 'nnu', 'Nn4g22232' => 'nnu', 'Oeu005144.1' => 'oeu', 'Oeu005145.1' => 'oeu', 'Oeu011348.1' => 'oeu', 'Oeu016415.1' => 'oeu', 'Oeu023501.1' => 'oeu', 'Oeu044473.1' => 'oeu', 'Oeu048892.2' => 'oeu', 'Os01g0549200' => 'osa', 'Os02g0469300' => 'osa', 'Os04g0311100' => 'osa', 'Os06g0474900' => 'osa', 'Os10g0181700' => 'osa', 'Os11g0454800' => 'osa', 'Peaxi162Scf00037g00714' => 'pax', 'Peaxi162Scf00084g01217' => 'pax', 'Peaxi162Scf00257g00217' => 'pax', 'Peaxi162Scf00516g00215' => 'pax', 'Peaxi162Scf00689g00123' => 'pax', 'PGR044G2719' => 'pgr', 'PGR083G1360' => 'pgr', 'PGR102G2849' => 'pgr', 'PGR119G2534' => 'pgr', 'PGSC0003DMG400003538' => 'stu', 'PGSC0003DMG400028138' => 'stu', 'PGSC0003DMG400031732' => 'stu', 'PGSC0003DMG400038165' => 'stu', 'Phvul.002G284600' => 'pvu', 'Phvul.003G258200' => 'pvu', 'Phvul.009G176500' => 'pvu', 'Potri.003G167201' => 'ptr', 'Potri.005G118400' => 'ptr', 'Potri.012G089000' => 'ptr', 'Potri.012G102800' => 'ptr', 'Potri.015G079400' => 'ptr', 'Potri.015G100900' => 'ptr', 'Pp3c14_9810' => 'ppa', 'Pp3c15_10450' => 'ppa', 'Pp3c20_19150' => 'ppa', 'Pp3c23_12740' => 'ppa', 'Pp3c23_6310' => 'ppa', 'Pp3c24_3720' => 'ppa', 'Pp3c27_2580' => 'ppa', 'Pp3c9_8990' => 'ppa', 'PRCOL_00002854' => 'pco', 'Prupe.1G221200' => 'ppe', 'Prupe.3G289000' => 'ppe', 'Prupe.5G147000' => 'ppe', 'Prupe.6G157300' => 'ppe', 'Prupe.7G163400' => 'ppe', 'Psat0s2177g0040' => 'psa', 'Psat3g174760' => 'psa', 'Psat3g192160' => 'psa', 'Psat4g058520' => 'psa', 'Psat4g096840' => 'psa', 'Psat7g037320' => 'psa', 'PSO017G1274' => 'pso', 'PSO017G5166' => 'pso', 'PSO063G4558' => 'pso', 'PSO170G4458' => 'pso', 'PSO170G5005' => 'pso', 'PSO210G6156' => 'pso', 'PSO210G6635' => 'pso', 'PSO210G7397' => 'pso', 'PSO210G7700' => 'pso', 'PSO455G0035' => 'pso', 'PSO455G0180' => 'pso', 'PSO478G4515' => 'pso', 'PSO832G1305' => 'pso', 'PSO832G3489' => 'pso', 'QL02p075247' => 'qlo', 'QL03p051148' => 'qlo', 'QL05p010313' => 'qlo', 'QL06p034627' => 'qlo', 'QL10p001889' => 'qlo', 'QL10p010846' => 'qlo', 'RcHm_v2.0_Chr1g0350621' => 'rch', 'RcHm_v2.0_Chr1g0350641' => 'rch', 'RcHm_v2.0_Chr2g0092891' => 'rch', 'RcHm_v2.0_Chr2g0100251' => 'rch', 'RcHm_v2.0_Chr2g0158661' => 'rch', 'RcHm_v2.0_Chr2g0172741' => 'rch', 'RcHm_v2.0_Chr4g0429571' => 'rch', 'RcHm_v2.0_Chr5g0042471' => 'rch', 'RcHm_v2.0_Chr7g0189451' => 'rch', 'Rhsim08G0052000' => 'rsi', 'Rhsim08G0174400' => 'rsi', 'Rhsim08G0193200' => 'rsi', 'Rhsim10G0214800' => 'rsi', 'Rhsim10G0214900' => 'rsi', 'Rhsim10G0215000' => 'rsi', 'Rhsim12G0022900' => 'rsi', 'Rhsim12G0177500' => 'rsi', 'Rhsim12G0177700' => 'rsi', 'Sabra03G0122600' => 'sbr', 'Sabra05G0097400' => 'sbr', 'Sabra12G0064100' => 'sbr', 'Sabra15G0121300' => 'sbr', 'SalBow2G0642' => 'sbo', 'SalBow5G2667' => 'sbo', 'SalBow5G4873' => 'sbo', 'SalBow8G2395' => 'sbo', 'Sc03g0003290' => 'sci', 'Sc10g0010130' => 'sci', 'Sc22g0003650' => 'sci', 'Sed0001603' => 'sed', 'Sed0004259' => 'sed', 'Sed0006789' => 'sed', 'Sed0011838' => 'sed', 'Sed0012964' => 'sed', 'Sed0016383' => 'sed', 'Sed0019010' => 'sed', 'Sed0020188' => 'sed', 'SEGI_04702' => 'sgi', 'SEGI_17231' => 'sgi', 'SEGI_18877' => 'sgi', 'SEGI_25196' => 'sgi', 'SEGI_25515' => 'sgi', 'SEGI_28445' => 'sgi', 'SEGI_37452' => 'sgi', 'SGA_v2.0_scaffold188G40336' => 'sas', 'SGA_v2.0_scaffold228G43247' => 'sas', 'SGA_v2.0_scaffold280G46853' => 'sas', 'SGA_v2.0_scaffold34G13808' => 'sas', 'SGA_v2.0_scaffold40G15576' => 'sas', 'SGA_v2.0_scaffold611G53188' => 'sas', 'SGA_v2.0_scaffold78G25461' => 'sas', 'SGA_v2.0_scaffold90G27888' => 'sas', 'SHI08601' => 'shi', 'SHI08606' => 'shi', 'SHI17117' => 'shi', 'SHI17119' => 'shi', 'SMO118G0201' => 'smo', 'SMO169G0247' => 'smo', 'SMO176G0006' => 'smo', 'SMO176G0015' => 'smo', 'SMO202G0006' => 'smo', 'SMO240G0050' => 'smo', 'SMO286G0009' => 'smo', 'SMO338G0033' => 'smo', 'SMO356G0533' => 'smo', 'SMO364G0382' => 'smo', 'SMO367G0166' => 'smo', 'SMO367G1098' => 'smo', 'Solyc01g009920.3' => 'sly', 'Solyc01g099300.3' => 'sly', 'Solyc02g084700.3' => 'sly', 'Solyc03g097520.3' => 'sly', 'Solyc06g071580.3' => 'sly', 'Solyc10g081760.3' => 'sly', 'Sopen01g005480' => 'spe', 'Sopen01g042850' => 'spe', 'Sopen02g029370' => 'spe', 'Sopen03g028280' => 'spe', 'Sopen06g027870' => 'spe', 'Sopen10g032270' => 'spe', 'Sp5g18180' => 'spa', 'Sp6g12880' => 'spa', 'Sp6g30850' => 'spa', 'Sp7g22960' => 'spa', 'Sp7g34010' => 'spa', 'SpUn1326_0010' => 'spa', 'TAR371G0242' => 'tar', 'TAR622G0638' => 'tar', 'TAR628G1548' => 'tar', 'TAR629G1079' => 'tar', 'TAR629G3413' => 'tar', 'THA.LOC104804249' => 'tha', 'THA.LOC104808315' => 'tha', 'THA.LOC104809238' => 'tha', 'THA.LOC104825484' => 'tha', 'Thecc.01G025500' => 'tca', 'Thecc.03G015800' => 'tca', 'Thecc.03G018000' => 'tca', 'Thecc.03G134800' => 'tca', 'Thecc.04G014700' => 'tca', 'Thhalv10006991m.g' => 'esa', 'Thhalv10012707m.g' => 'esa', 'Thhalv10015739m.g' => 'esa', 'Thhalv10024553m.g' => 'esa', 'Thhalv10024673m.g' => 'esa', 'Thhalv10029187m.g' => 'esa', 'TPR.G12971' => 'tpr', 'TPR.G29396' => 'tpr', 'TPR.G33376' => 'tpr', 'TPR.G35508' => 'tpr', 'TPR.G35516' => 'tpr', 'TPR.G37317' => 'tpr', 'TPR.G37389' => 'tpr', 'TPR.G37523' => 'tpr', 'TPR.G559' => 'tpr', 'TWI14G0070' => 'twi', 'TWI14G0729' => 'twi', 'TWI18G0596' => 'twi', 'TWI39G0780' => 'twi', 'TWI39G0850' => 'twi', 'TWI73G1052' => 'twi', 'unitig_52.g17485' => 'ugi', 'unitig_61.g26355' => 'ugi', 'vmacro01040' => 'vma', 'vmacro16731' => 'vma', 'vmacro18270' => 'vma', 'vmacro19142' => 'vma', 'vmacro19407' => 'vma', 'vmacro19408' => 'vma', 'vmacro21899' => 'vma', 'vmacro21900' => 'vma', 'vmacro21901' => 'vma', 'VMungo0251G0490' => 'vmu', 'VMungo0251G1748' => 'vmu', 'VMungo1309G0421' => 'vmu', 'Zm00001eb086500' => 'zma', 'Zm00001eb150680' => 'zma', 'Zm00001eb162330' => 'zma', 'Zm00001eb203130' => 'zma', 'Zm00001eb369480' => 'zma', 'Zm00001eb382340' => 'zma', 'Zm00001eb416360' => 'zma' ), 'gf_id' => 'HOM05D000902', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000902' ), 'data_identifier' => 'HOM05D000902', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000902', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '663', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02470' => 'bna', 'A01p16260' => 'bna', 'A02p01680' => 'bna', 'A03p16600' => 'bna', 'A03p55660' => 'bna', 'A03p64160' => 'bna', 'A03p64170' => 'bna', 'A08p31900' => 'bna', 'A09p59530' => 'bna', 'A10p08230' => 'bna', 'A10p25090' => 'bna', 'Aa31LG3G7100' => 'aar', 'Aa31LG3G7110' => 'aar', 'Aa31LG6G13160' => 'aar', 'Aa31LG7G10770' => 'aar', 'Aa31LG7G3830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2723' => 'aag', 'Actinidia08045' => 'ach', 'Actinidia08888' => 'ach', 'Actinidia18333' => 'ach', 'Actinidia19334' => 'ach', 'Actinidia25552' => 'ach', 'Actinidia26089' => 'ach', 'Actinidia30615' => 'ach', 'Actinidia30616' => 'ach', 'Actinidia33083' => 'ach', 'Actinidia35762' => 'ach', 'Ah.02g110620' => 'amhyb', 'Ah.11g046390' => 'amhyb', 'AL1G31670' => 'aly', 'AL6G23730' => 'aly', 'AL7G14740' => 'aly', 'AL7G14750' => 'aly', 'AL7G14760' => 'aly', 'AL7G28220' => 'aly', 'AL8G24940' => 'aly', 'Aqoxy3G01665' => 'aox', 'Aqoxy3G02853' => 'aox', 'Aqoxy5G01513' => 'aox', 'Aqoxy5G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8SKA4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ75LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKDA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0LJZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7REX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZP4YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWX7I5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2QKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS0L9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPCD8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q161UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC7XCF' => 'arhy', 'AT1G19100' => 'ath', 'AT4G24970' => 'ath', 'AT4G36270' => 'ath', 'AT4G36280' => 'ath', 'AT4G36290' => 'ath', 'AT5G13130' => 'ath', 'AT5G50780' => 'ath', 'ATR0582G266' => 'atr', 'ATR0661G195' => 'atr', 'ATR1152G031' => 'atr', 'Atru.chr11.2382' => 'acertr', 'Atru.chr12.2337' => 'acertr', 'Atru.chr3.744' => 'acertr', 'Atru.chr6.1870' => 'acertr', 'Atru.chr9.2515' => 'acertr', 'AUR62004120' => 'cqu', 'AUR62005667' => 'cqu', 'AUR62007634' => 'cqu', 'AUR62008186' => 'cqu', 'AUR62008187' => 'cqu', 'AUR62008188' => 'cqu', 'AUR62027954' => 'cqu', 'AUR62028766' => 'cqu', 'AUR62028767' => 'cqu', 'AUR62028768' => 'cqu', 'AUR62028886' => 'cqu', 'AUR62029563' => 'cqu', 'AUR62038832' => 'cqu', 'BcaB01g04149' => 'bca', 'BcaB03g12940' => 'bca', 'BcaB03g13090' => 'bca', 'BcaB03g14466' => 'bca', 'BcaB05g24035' => 'bca', 'BcaC01g06050' => 'bca', 'BcaC04g19148' => 'bca', 'BcaC04g20761' => 'bca', 'BcaC06g32845' => 'bca', 'BcaC07g41274' => 'bca', 'BcaC09g50827' => 'bca', 'BcaNung00741' => 'bca', 'BcaNung00742' => 'bca', 'BcaNung01859' => 'bca', 'BcaNung03985' => 'bca', 'BcaNung03989' => 'bca', 'BcaNung05661' => 'bca', 'BolC1t00257H' => 'bol', 'BolC1t01956H' => 'bol', 'BolC2t06534H' => 'bol', 'BolC3t14334H' => 'bol', 'BolC5t30451H' => 'bol', 'BolC7t45880H' => 'bol', 'BolC7t46586H' => 'bol', 'BolC8t49301H' => 'bol', 'BolC8t51837H' => 'bol', 'BolC9t56822H' => 'bol', 'BolC9t59235H' => 'bol', 'BraA01t00234Z' => 'bra', 'BraA01t01563Z' => 'bra', 'BraA02t05147Z' => 'bra', 'BraA03t10947Z' => 'bra', 'BraA03t14633Z' => 'bra', 'BraA08t35112Z' => 'bra', 'BraA09t41330Z' => 'bra', 'BraA10t44570Z' => 'bra', 'C01p02670' => 'bna', 'C01p20260' => 'bna', 'C02p05890' => 'bna', 'C03p19530' => 'bna', 'C05p17470' => 'bna', 'C07p53900' => 'bna', 'C07p61630' => 'bna', 'C08p16800' => 'bna', 'C08p42810' => 'bna', 'C09p39480' => 'bna', 'C09p63980' => 'bna', 'CAN.G1001.7' => 'can', 'CAN.G1034.55' => 'can', 'CAN.G143.7' => 'can', 'CAN.G3340.1' => 'can', 'CAN.G358.19' => 'can', 'CAN.G373.2' => 'can', 'CAN.G674.16' => 'can', 'CAN.G674.17' => 'can', 'CAN.G674.18' => 'can', 'CAN.G732.2' => 'can', 'CAN.G732.3' => 'can', 'CAN.G993.39' => 'can', 'CANSAT01G2052' => 'cansat', 'CANSAT80G0070' => 'cansat', 'CANSAT80G0483' => 'cansat', 'CANSAT80G0625' => 'cansat', 'CARHR019690' => 'chi', 'CARHR080280' => 'chi', 'CARHR152750' => 'chi', 'CARHR152760' => 'chi', 'CARHR152770' => 'chi', 'CARHR200340' => 'chi', 'CARHR232370' => 'chi', 'CARHR244670' => 'chi', 'CARHR244680' => 'chi', 'CARHR257520' => 'chi', 'Carub.0001s1872' => 'cru', 'Carub.0006s1130' => 'cru', 'Carub.0007s0396' => 'cru', 'Carub.0007s0397' => 'cru', 'Carub.0007s1608' => 'cru', 'Carub.0008s1068' => 'cru', 'Carub.0008s1077' => 'cru', 'Ca_16158_v3' => 'car', 'Ca_17571_v3' => 'car', 'Ca_21936_v3' => 'car', 'Ca_22350_v3' => 'car', 'CBR_g22445' => 'cbr', 'CBR_g26290' => 'cbr', 'Cc04_g09610' => 'ccan', 'Cc04_g12280' => 'ccan', 'Cc07_g10230' => 'ccan', 'CDE02G0093' => 'cde', 'CDE02G0701' => 'cde', 'CDE04G1050' => 'cde', 'CDE05G1833' => 'cde', 'CDE05G3058' => 'cde', 'CDE05G3380' => 'cde', 'CDE06G0536' => 'cde', 'Cfa006923' => 'cfa', 'Cfa009402' => 'cfa', 'Cfa018751' => 'cfa', 'Cfa019164' => 'cfa', 'Cfa022935' => 'cfa', 'Ciclev10019081m.g' => 'ccl', 'Ciclev10025076m.g' => 'ccl', 'Ciclev10030712m.g' => 'ccl', 'Ciclev10033760m.g' => 'ccl', 'CiPaw.05G105600' => 'cil', 'CiPaw.08G136700' => 'cil', 'CiPaw.11G003900' => 'cil', 'CiPaw.11G023700' => 'cil', 'CiPaw.12G003700' => 'cil', 'ClCG06G017100' => 'cla', 'ClCG06G018110' => 'cla', 'ClCG07G008800' => 'cla', 'ClCG07G015330' => 'cla', 'COL.COLO4_13698' => 'col', 'COL.COLO4_16659' => 'col', 'COL.COLO4_21986' => 'col', 'COL.COLO4_24049' => 'col', 'COL.COLO4_29061' => 'col', 'COL.COLO4_29075' => 'col', 'COL.COLO4_30094' => 'col', 'Cpa.g.c33689' => 'cpa', 'Cpa.g.sc108.39' => 'cpa', 'Cpa.g.sc108.41' => 'cpa', 'Cpa.g.sc1163.1' => 'cpa', 'Cpa.g.sc4.155' => 'cpa', 'Cpa.g.sc6.194' => 'cpa', 'CsaV3_1G000340' => 'csa', 'CsaV3_1G001400' => 'csa', 'CsaV3_4G002220' => 'csa', 'CsaV3_4G005370' => 'csa', 'CSS0007487' => 'camsi', 'CSS0008066' => 'camsi', 'CSS0009120' => 'camsi', 'CSS0015512' => 'camsi', 'CSS0022409' => 'camsi', 'CSS0025358' => 'camsi', 'CSS0044547' => 'camsi', 'DCAR_013057' => 'dca', 'DCAR_015058' => 'dca', 'DCAR_016027' => 'dca', 'DCAR_017327' => 'dca', 'DCAR_020743' => 'dca', 'DCAR_026157' => 'dca', 'DCAR_032339' => 'dca', 'DCAR_032340' => 'dca', 'Dinv11200' => 'din', 'Dinv11201' => 'din', 'Dinv20631' => 'din', 'Dinv23182' => 'din', 'Dinv33466' => 'din', 'Dinv33583' => 'din', 'Dinv38565' => 'din', 'Duzib068G0200' => 'dzi', 'Duzib147G0132' => 'dzi', 'Duzib147G0635' => 'dzi', 'Duzib205G1670' => 'dzi', 'Duzib251G0606' => 'dzi', 'ECA232G3336' => 'eca', 'ECA232G3763' => 'eca', 'ECA232G4845' => 'eca', 'ECA234G1607' => 'eca', 'ECA246G0932' => 'eca', 'ECA247G0781' => 'eca', 'ECA247G1932' => 'eca', 'ECA247G2079' => 'eca', 'ECA247G3338' => 'eca', 'ECA247G4115' => 'eca', 'EL10Ac3g06552' => 'bvu', 'EL10Ac5g10721' => 'bvu', 'EL10Ac5g10722' => 'bvu', 'EL10Ac5g10723' => 'bvu', 'EL10Ac5g11361' => 'bvu', 'EL10Ac6g13553' => 'bvu', 'EL10As8g23872' => 'bvu', 'Eucgr.B00250' => 'egr', 'Eucgr.B00251' => 'egr', 'Eucgr.B03533' => 'egr', 'Eucgr.I02381' => 'egr', 'Eucgr.K02700' => 'egr', 'FAN02G0174' => 'fan', 'FAN02G3146' => 'fan', 'FAN04G1672' => 'fan', 'FAN04G2273' => 'fan', 'FAN05G2791' => 'fan', 'FAN05G4035' => 'fan', 'FAN07G0834' => 'fan', 'FAN08G1198' => 'fan', 'FAN09G4182' => 'fan', 'FAN12G0496' => 'fan', 'FAN13G1027' => 'fan', 'FAN13G2951' => 'fan', 'FAN14G0705' => 'fan', 'FAN14G0720' => 'fan', 'FAN17G0201' => 'fan', 'FAN17G2665' => 'fan', 'FAN18G1456' => 'fan', 'FAN18G1525' => 'fan', 'FAN18G3500' => 'fan', 'FAN28G2670' => 'fan', 'FvH4_1g12391' => 'fve', 'FvH4_4g23220' => 'fve', 'FvH4_5g08810' => 'fve', 'FvH4_5g28960' => 'fve', 'FvH4_6g42820' => 'fve', 'FvH4_6g51110' => 'fve', 'Glyma.02G051802' => 'gma', 'Glyma.04G185300' => 'gma', 'Glyma.05G202900' => 'gma', 'Glyma.08G010300' => 'gma', 'Glyma.16G131900' => 'gma', 'Glyma.17G087900' => 'gma', 'Gohir.A07G048600' => 'ghi', 'Gohir.A11G179000' => 'ghi', 'Gohir.A12G140900' => 'ghi', 'Gohir.A12G140950' => 'ghi', 'Gohir.A12G191700' => 'ghi', 'Gohir.A13G086300' => 'ghi', 'Gohir.D07G052900' => 'ghi', 'Gohir.D11G186600' => 'ghi', 'Gohir.D12G145575' => 'ghi', 'Gohir.D12G145650' => 'ghi', 'Gohir.D12G145725' => 'ghi', 'Gohir.D12G194050' => 'ghi', 'Gohir.D13G091800' => 'ghi', 'Gorai.001G055900' => 'gra', 'Gorai.007G198400' => 'gra', 'Gorai.008G157000' => 'gra', 'Gorai.008G157100' => 'gra', 'Gorai.008G208700' => 'gra', 'Gorai.010G138700' => 'gra', 'GSVIVG01000977001' => 'vvi', 'GSVIVG01007708001' => 'vvi', 'GSVIVG01008587001' => 'vvi', 'GSVIVG01018849001' => 'vvi', 'GSVIVG01032432001' => 'vvi', 'HanXRQChr02g0034131' => 'han', 'HanXRQChr02g0035981' => 'han', 'HanXRQChr02g0035991' => 'han', 'HanXRQChr05g0155611' => 'han', 'HanXRQChr05g0155621' => 'han', 'HanXRQChr08g0236501' => 'han', 'HanXRQChr09g0261321' => 'han', 'HanXRQChr09g0272081' => 'han', 'HanXRQChr10g0310741' => 'han', 'HanXRQChr11g0325591' => 'han', 'HanXRQChr12g0385691' => 'han', 'HanXRQChr13g0387801' => 'han', 'HanXRQChr15g0463011' => 'han', 'Haze_03826' => 'cav', 'Haze_03827' => 'cav', 'Haze_07183' => 'cav', 'Haze_07537' => 'cav', 'Haze_07539' => 'cav', 'Haze_12461' => 'cav', 'Haze_16115' => 'cav', 'Haze_16808' => 'cav', 'Haze_18531' => 'cav', 'Hma1.2p1_0046F.1_g026700' => 'hma', 'Hma1.2p1_0046F.1_g026710' => 'hma', 'Hma1.2p1_0168F.1_g074340' => 'hma', 'Hma1.2p1_0266F.1_g107030' => 'hma', 'Hma1.2p1_0266F.1_g107060' => 'hma', 'Hma1.2p1_0275F.1_g110510' => 'hma', 'Hma1.2p1_0592F.1_g185490' => 'hma', 'Hma1.2p1_0592F.1_g185500' => 'hma', 'Hma1.2p1_0592F.1_g185510' => 'hma', 'Hma1.2p1_0592F.1_g185520' => 'hma', 'Hma1.2p1_0592F.1_g185530' => 'hma', 'Hma1.2p1_0818F.1_g223450' => 'hma', 'HPP92_009708' => 'vpl', 'HPP92_009793' => 'vpl', 'HPP92_009796' => 'vpl', 'HPP92_009797' => 'vpl', 'HPP92_014940' => 'vpl', 'HPP92_014988' => 'vpl', 'Hund02463' => 'sun', 'Hund02760' => 'sun', 'Hund05071' => 'sun', 'Hund10108' => 'sun', 'Hund11204' => 'sun', 'Hund14016' => 'sun', 'Hund16464' => 'sun', 'Lalb_Chr09g0333391' => 'lal', 'Lalb_Chr11g0070461' => 'lal', 'Lalb_Chr12g0201671' => 'lal', 'Lalb_Chr13g0297161' => 'lal', 'Lj1g0002823' => 'lja', 'Lj3C1074T6' => 'lonja', 'Lj4A212T28' => 'lonja', 'Lj4g0005516' => 'lja', 'Lj4g0013705' => 'lja', 'Lj4g0027865' => 'lja', 'Lj5C92G16' => 'lonja', 'Lj5C92T12' => 'lonja', 'Lj7C596T3' => 'lonja', 'Lj9A446G59' => 'lonja', 'Lj9A482G21' => 'lonja', 'Lsat_1_v5_gn_1_28261' => 'lsa', 'Lsat_1_v5_gn_1_28281' => 'lsa', 'Lsat_1_v5_gn_1_32721' => 'lsa', 'Lsat_1_v5_gn_4_151760' => 'lsa', 'Lsat_1_v5_gn_4_2120' => 'lsa', 'Lsat_1_v5_gn_4_75761' => 'lsa', 'Lsat_1_v5_gn_5_10920' => 'lsa', 'Manes.02G099900' => 'mes', 'Manes.11G096200' => 'mes', 'Manes.12G007200' => 'mes', 'Manes.14G048300' => 'mes', 'Manes.17G114700' => 'mes', 'Mapoly0002s0070' => 'mpo', 'Mapoly0029s0099' => 'mpo', 'MBI07_g24742_MAGBIO' => 'mbi', 'MBI10_g27988_MAGBIO' => 'mbi', 'MBI11_g13057_MAGBIO' => 'mbi', 'MD02G1137200' => 'mdo', 'MD06G1137200' => 'mdo', 'MD07G1122300' => 'mdo', 'MD09G1078200' => 'mdo', 'MD13G1123700' => 'mdo', 'MD14G1151900' => 'mdo', 'MD17G1030900' => 'mdo', 'MD17G1068200' => 'mdo', 'MD17G1068600' => 'mdo', 'Medtr3g077540' => 'mtr', 'Medtr4g105530' => 'mtr', 'Medtr8g076580' => 'mtr', 'Medtr8g076590' => 'mtr', 'Medtr8g096410' => 'mtr', 'MELO3C016411.2' => 'cme', 'MELO3C017780.2' => 'cme', 'MELO3C022560.2' => 'cme', 'MELO3C026187.2' => 'cme', 'MELO3C026286.2' => 'cme', 'MELO3C032854.2' => 'cme', 'Migut.H02495' => 'egut', 'Migut.I00561' => 'egut', 'Migut.K01015' => 'egut', 'Migut.K01016' => 'egut', 'Migut.L00743' => 'egut', 'Migut.L00744' => 'egut', 'Migut.L00746' => 'egut', 'Migut.L00798' => 'egut', 'Migut.L00799' => 'egut', 'Migut.N02096' => 'egut', 'MSTRG.11259' => 'ama', 'MSTRG.23142' => 'ama', 'MSTRG.2499' => 'ama', 'Nitab4.5_0000003g0730' => 'nta', 'Nitab4.5_0000137g0020' => 'nta', 'Nitab4.5_0000721g0210' => 'nta', 'Nitab4.5_0000723g0050' => 'nta', 'Nitab4.5_0000913g0070' => 'nta', 'Nitab4.5_0001332g0040' => 'nta', 'Nitab4.5_0001771g0050' => 'nta', 'Nitab4.5_0001918g0050' => 'nta', 'Nitab4.5_0002686g0030' => 'nta', 'Nitab4.5_0003156g0020' => 'nta', 'Nitab4.5_0003383g0040' => 'nta', 'Nitab4.5_0003918g0010' => 'nta', 'Nitab4.5_0006760g0010' => 'nta', 'Nn1g05981' => 'nnu', 'Nn1g06288' => 'nnu', 'Nn3g16371' => 'nnu', 'Nn3g16786' => 'nnu', 'Nn4g22232' => 'nnu', 'Oeu005144.1' => 'oeu', 'Oeu005145.1' => 'oeu', 'Oeu011348.1' => 'oeu', 'Oeu016415.1' => 'oeu', 'Oeu023501.1' => 'oeu', 'Oeu044473.1' => 'oeu', 'Oeu048892.2' => 'oeu', 'Os01g0549200' => 'osa', 'Os02g0469300' => 'osa', 'Os04g0311100' => 'osa', 'Os06g0474900' => 'osa', 'Os10g0181700' => 'osa', 'Os11g0454800' => 'osa', 'Peaxi162Scf00037g00714' => 'pax', 'Peaxi162Scf00084g01217' => 'pax', 'Peaxi162Scf00257g00217' => 'pax', 'Peaxi162Scf00516g00215' => 'pax', 'Peaxi162Scf00689g00123' => 'pax', 'PGR044G2719' => 'pgr', 'PGR083G1360' => 'pgr', 'PGR102G2849' => 'pgr', 'PGR119G2534' => 'pgr', 'PGSC0003DMG400003538' => 'stu', 'PGSC0003DMG400028138' => 'stu', 'PGSC0003DMG400031732' => 'stu', 'PGSC0003DMG400038165' => 'stu', 'Phvul.002G284600' => 'pvu', 'Phvul.003G258200' => 'pvu', 'Phvul.009G176500' => 'pvu', 'Potri.003G167201' => 'ptr', 'Potri.005G118400' => 'ptr', 'Potri.012G089000' => 'ptr', 'Potri.012G102800' => 'ptr', 'Potri.015G079400' => 'ptr', 'Potri.015G100900' => 'ptr', 'Pp3c14_9810' => 'ppa', 'Pp3c15_10450' => 'ppa', 'Pp3c20_19150' => 'ppa', 'Pp3c23_12740' => 'ppa', 'Pp3c23_6310' => 'ppa', 'Pp3c24_3720' => 'ppa', 'Pp3c27_2580' => 'ppa', 'Pp3c9_8990' => 'ppa', 'PRCOL_00002854' => 'pco', 'Prupe.1G221200' => 'ppe', 'Prupe.3G289000' => 'ppe', 'Prupe.5G147000' => 'ppe', 'Prupe.6G157300' => 'ppe', 'Prupe.7G163400' => 'ppe', 'Psat0s2177g0040' => 'psa', 'Psat3g174760' => 'psa', 'Psat3g192160' => 'psa', 'Psat4g058520' => 'psa', 'Psat4g096840' => 'psa', 'Psat7g037320' => 'psa', 'PSO017G1274' => 'pso', 'PSO017G5166' => 'pso', 'PSO063G4558' => 'pso', 'PSO170G4458' => 'pso', 'PSO170G5005' => 'pso', 'PSO210G6156' => 'pso', 'PSO210G6635' => 'pso', 'PSO210G7397' => 'pso', 'PSO210G7700' => 'pso', 'PSO455G0035' => 'pso', 'PSO455G0180' => 'pso', 'PSO478G4515' => 'pso', 'PSO832G1305' => 'pso', 'PSO832G3489' => 'pso', 'QL02p075247' => 'qlo', 'QL03p051148' => 'qlo', 'QL05p010313' => 'qlo', 'QL06p034627' => 'qlo', 'QL10p001889' => 'qlo', 'QL10p010846' => 'qlo', 'RcHm_v2.0_Chr1g0350621' => 'rch', 'RcHm_v2.0_Chr1g0350641' => 'rch', 'RcHm_v2.0_Chr2g0092891' => 'rch', 'RcHm_v2.0_Chr2g0100251' => 'rch', 'RcHm_v2.0_Chr2g0158661' => 'rch', 'RcHm_v2.0_Chr2g0172741' => 'rch', 'RcHm_v2.0_Chr4g0429571' => 'rch', 'RcHm_v2.0_Chr5g0042471' => 'rch', 'RcHm_v2.0_Chr7g0189451' => 'rch', 'Rhsim08G0052000' => 'rsi', 'Rhsim08G0174400' => 'rsi', 'Rhsim08G0193200' => 'rsi', 'Rhsim10G0214800' => 'rsi', 'Rhsim10G0214900' => 'rsi', 'Rhsim10G0215000' => 'rsi', 'Rhsim12G0022900' => 'rsi', 'Rhsim12G0177500' => 'rsi', 'Rhsim12G0177700' => 'rsi', 'Sabra03G0122600' => 'sbr', 'Sabra05G0097400' => 'sbr', 'Sabra12G0064100' => 'sbr', 'Sabra15G0121300' => 'sbr', 'SalBow2G0642' => 'sbo', 'SalBow5G2667' => 'sbo', 'SalBow5G4873' => 'sbo', 'SalBow8G2395' => 'sbo', 'Sc03g0003290' => 'sci', 'Sc10g0010130' => 'sci', 'Sc22g0003650' => 'sci', 'Sed0001603' => 'sed', 'Sed0004259' => 'sed', 'Sed0006789' => 'sed', 'Sed0011838' => 'sed', 'Sed0012964' => 'sed', 'Sed0016383' => 'sed', 'Sed0019010' => 'sed', 'Sed0020188' => 'sed', 'SEGI_04702' => 'sgi', 'SEGI_17231' => 'sgi', 'SEGI_18877' => 'sgi', 'SEGI_25196' => 'sgi', 'SEGI_25515' => 'sgi', 'SEGI_28445' => 'sgi', 'SEGI_37452' => 'sgi', 'SGA_v2.0_scaffold188G40336' => 'sas', 'SGA_v2.0_scaffold228G43247' => 'sas', 'SGA_v2.0_scaffold280G46853' => 'sas', 'SGA_v2.0_scaffold34G13808' => 'sas', 'SGA_v2.0_scaffold40G15576' => 'sas', 'SGA_v2.0_scaffold611G53188' => 'sas', 'SGA_v2.0_scaffold78G25461' => 'sas', 'SGA_v2.0_scaffold90G27888' => 'sas', 'SHI08601' => 'shi', 'SHI08606' => 'shi', 'SHI17117' => 'shi', 'SHI17119' => 'shi', 'SMO118G0201' => 'smo', 'SMO169G0247' => 'smo', 'SMO176G0006' => 'smo', 'SMO176G0015' => 'smo', 'SMO202G0006' => 'smo', 'SMO240G0050' => 'smo', 'SMO286G0009' => 'smo', 'SMO338G0033' => 'smo', 'SMO356G0533' => 'smo', 'SMO364G0382' => 'smo', 'SMO367G0166' => 'smo', 'SMO367G1098' => 'smo', 'Solyc01g009920.3' => 'sly', 'Solyc01g099300.3' => 'sly', 'Solyc02g084700.3' => 'sly', 'Solyc03g097520.3' => 'sly', 'Solyc06g071580.3' => 'sly', 'Solyc10g081760.3' => 'sly', 'Sopen01g005480' => 'spe', 'Sopen01g042850' => 'spe', 'Sopen02g029370' => 'spe', 'Sopen03g028280' => 'spe', 'Sopen06g027870' => 'spe', 'Sopen10g032270' => 'spe', 'Sp5g18180' => 'spa', 'Sp6g12880' => 'spa', 'Sp6g30850' => 'spa', 'Sp7g22960' => 'spa', 'Sp7g34010' => 'spa', 'SpUn1326_0010' => 'spa', 'TAR371G0242' => 'tar', 'TAR622G0638' => 'tar', 'TAR628G1548' => 'tar', 'TAR629G1079' => 'tar', 'TAR629G3413' => 'tar', 'THA.LOC104804249' => 'tha', 'THA.LOC104808315' => 'tha', 'THA.LOC104809238' => 'tha', 'THA.LOC104825484' => 'tha', 'Thecc.01G025500' => 'tca', 'Thecc.03G015800' => 'tca', 'Thecc.03G018000' => 'tca', 'Thecc.03G134800' => 'tca', 'Thecc.04G014700' => 'tca', 'Thhalv10006991m.g' => 'esa', 'Thhalv10012707m.g' => 'esa', 'Thhalv10015739m.g' => 'esa', 'Thhalv10024553m.g' => 'esa', 'Thhalv10024673m.g' => 'esa', 'Thhalv10029187m.g' => 'esa', 'TPR.G12971' => 'tpr', 'TPR.G29396' => 'tpr', 'TPR.G33376' => 'tpr', 'TPR.G35508' => 'tpr', 'TPR.G35516' => 'tpr', 'TPR.G37317' => 'tpr', 'TPR.G37389' => 'tpr', 'TPR.G37523' => 'tpr', 'TPR.G559' => 'tpr', 'TWI14G0070' => 'twi', 'TWI14G0729' => 'twi', 'TWI18G0596' => 'twi', 'TWI39G0780' => 'twi', 'TWI39G0850' => 'twi', 'TWI73G1052' => 'twi', 'unitig_52.g17485' => 'ugi', 'unitig_61.g26355' => 'ugi', 'vmacro01040' => 'vma', 'vmacro16731' => 'vma', 'vmacro18270' => 'vma', 'vmacro19142' => 'vma', 'vmacro19407' => 'vma', 'vmacro19408' => 'vma', 'vmacro21899' => 'vma', 'vmacro21900' => 'vma', 'vmacro21901' => 'vma', 'VMungo0251G0490' => 'vmu', 'VMungo0251G1748' => 'vmu', 'VMungo1309G0421' => 'vmu', 'Zm00001eb086500' => 'zma', 'Zm00001eb150680' => 'zma', 'Zm00001eb162330' => 'zma', 'Zm00001eb203130' => 'zma', 'Zm00001eb369480' => 'zma', 'Zm00001eb382340' => 'zma', 'Zm00001eb416360' => 'zma' ) $gf_id = 'HOM05D000902' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000902' ) $data_identifier = 'HOM05D000902' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 13, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 10, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 6, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 9, 'hma' => (int) 12, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 4, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 6, 'ppa' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 6, 'rch' => (int) 9, 'rsi' => (int) 9, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 12, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 3, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416360' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000902', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '663', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02470' => 'bna', 'A01p16260' => 'bna', 'A02p01680' => 'bna', 'A03p16600' => 'bna', 'A03p55660' => 'bna', 'A03p64160' => 'bna', 'A03p64170' => 'bna', 'A08p31900' => 'bna', 'A09p59530' => 'bna', 'A10p08230' => 'bna', 'A10p25090' => 'bna', 'Aa31LG3G7100' => 'aar', 'Aa31LG3G7110' => 'aar', 'Aa31LG6G13160' => 'aar', 'Aa31LG7G10770' => 'aar', 'Aa31LG7G3830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2723' => 'aag', 'Actinidia08045' => 'ach', 'Actinidia08888' => 'ach', 'Actinidia18333' => 'ach', 'Actinidia19334' => 'ach', 'Actinidia25552' => 'ach', 'Actinidia26089' => 'ach', 'Actinidia30615' => 'ach', 'Actinidia30616' => 'ach', 'Actinidia33083' => 'ach', 'Actinidia35762' => 'ach', 'Ah.02g110620' => 'amhyb', 'Ah.11g046390' => 'amhyb', 'AL1G31670' => 'aly', 'AL6G23730' => 'aly', 'AL7G14740' => 'aly', 'AL7G14750' => 'aly', 'AL7G14760' => 'aly', 'AL7G28220' => 'aly', 'AL8G24940' => 'aly', 'Aqoxy3G01665' => 'aox', 'Aqoxy3G02853' => 'aox', 'Aqoxy5G01513' => 'aox', 'Aqoxy5G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8SKA4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ75LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKDA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0LJZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7REX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZP4YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWX7I5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2QKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS0L9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPCD8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q161UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC7XCF' => 'arhy', 'AT1G19100' => 'ath', 'AT4G24970' => 'ath', 'AT4G36270' => 'ath', 'AT4G36280' => 'ath', 'AT4G36290' => 'ath', 'AT5G13130' => 'ath', 'AT5G50780' => 'ath', 'ATR0582G266' => 'atr', 'ATR0661G195' => 'atr', 'ATR1152G031' => 'atr', 'Atru.chr11.2382' => 'acertr', 'Atru.chr12.2337' => 'acertr', 'Atru.chr3.744' => 'acertr', 'Atru.chr6.1870' => 'acertr', 'Atru.chr9.2515' => 'acertr', 'AUR62004120' => 'cqu', 'AUR62005667' => 'cqu', 'AUR62007634' => 'cqu', 'AUR62008186' => 'cqu', 'AUR62008187' => 'cqu', 'AUR62008188' => 'cqu', 'AUR62027954' => 'cqu', 'AUR62028766' => 'cqu', 'AUR62028767' => 'cqu', 'AUR62028768' => 'cqu', 'AUR62028886' => 'cqu', 'AUR62029563' => 'cqu', 'AUR62038832' => 'cqu', 'BcaB01g04149' => 'bca', 'BcaB03g12940' => 'bca', 'BcaB03g13090' => 'bca', 'BcaB03g14466' => 'bca', 'BcaB05g24035' => 'bca', 'BcaC01g06050' => 'bca', 'BcaC04g19148' => 'bca', 'BcaC04g20761' => 'bca', 'BcaC06g32845' => 'bca', 'BcaC07g41274' => 'bca', 'BcaC09g50827' => 'bca', 'BcaNung00741' => 'bca', 'BcaNung00742' => 'bca', 'BcaNung01859' => 'bca', 'BcaNung03985' => 'bca', 'BcaNung03989' => 'bca', 'BcaNung05661' => 'bca', 'BolC1t00257H' => 'bol', 'BolC1t01956H' => 'bol', 'BolC2t06534H' => 'bol', 'BolC3t14334H' => 'bol', 'BolC5t30451H' => 'bol', 'BolC7t45880H' => 'bol', 'BolC7t46586H' => 'bol', 'BolC8t49301H' => 'bol', 'BolC8t51837H' => 'bol', 'BolC9t56822H' => 'bol', 'BolC9t59235H' => 'bol', 'BraA01t00234Z' => 'bra', 'BraA01t01563Z' => 'bra', 'BraA02t05147Z' => 'bra', 'BraA03t10947Z' => 'bra', 'BraA03t14633Z' => 'bra', 'BraA08t35112Z' => 'bra', 'BraA09t41330Z' => 'bra', 'BraA10t44570Z' => 'bra', 'C01p02670' => 'bna', 'C01p20260' => 'bna', 'C02p05890' => 'bna', 'C03p19530' => 'bna', 'C05p17470' => 'bna', 'C07p53900' => 'bna', 'C07p61630' => 'bna', 'C08p16800' => 'bna', 'C08p42810' => 'bna', 'C09p39480' => 'bna', 'C09p63980' => 'bna', 'CAN.G1001.7' => 'can', 'CAN.G1034.55' => 'can', 'CAN.G143.7' => 'can', 'CAN.G3340.1' => 'can', 'CAN.G358.19' => 'can', 'CAN.G373.2' => 'can', 'CAN.G674.16' => 'can', 'CAN.G674.17' => 'can', 'CAN.G674.18' => 'can', 'CAN.G732.2' => 'can', 'CAN.G732.3' => 'can', 'CAN.G993.39' => 'can', 'CANSAT01G2052' => 'cansat', 'CANSAT80G0070' => 'cansat', 'CANSAT80G0483' => 'cansat', 'CANSAT80G0625' => 'cansat', 'CARHR019690' => 'chi', 'CARHR080280' => 'chi', 'CARHR152750' => 'chi', 'CARHR152760' => 'chi', 'CARHR152770' => 'chi', 'CARHR200340' => 'chi', 'CARHR232370' => 'chi', 'CARHR244670' => 'chi', 'CARHR244680' => 'chi', 'CARHR257520' => 'chi', 'Carub.0001s1872' => 'cru', 'Carub.0006s1130' => 'cru', 'Carub.0007s0396' => 'cru', 'Carub.0007s0397' => 'cru', 'Carub.0007s1608' => 'cru', 'Carub.0008s1068' => 'cru', 'Carub.0008s1077' => 'cru', 'Ca_16158_v3' => 'car', 'Ca_17571_v3' => 'car', 'Ca_21936_v3' => 'car', 'Ca_22350_v3' => 'car', 'CBR_g22445' => 'cbr', 'CBR_g26290' => 'cbr', 'Cc04_g09610' => 'ccan', 'Cc04_g12280' => 'ccan', 'Cc07_g10230' => 'ccan', 'CDE02G0093' => 'cde', 'CDE02G0701' => 'cde', 'CDE04G1050' => 'cde', 'CDE05G1833' => 'cde', 'CDE05G3058' => 'cde', 'CDE05G3380' => 'cde', 'CDE06G0536' => 'cde', 'Cfa006923' => 'cfa', 'Cfa009402' => 'cfa', 'Cfa018751' => 'cfa', 'Cfa019164' => 'cfa', 'Cfa022935' => 'cfa', 'Ciclev10019081m.g' => 'ccl', 'Ciclev10025076m.g' => 'ccl', 'Ciclev10030712m.g' => 'ccl', 'Ciclev10033760m.g' => 'ccl', 'CiPaw.05G105600' => 'cil', 'CiPaw.08G136700' => 'cil', 'CiPaw.11G003900' => 'cil', 'CiPaw.11G023700' => 'cil', 'CiPaw.12G003700' => 'cil', 'ClCG06G017100' => 'cla', 'ClCG06G018110' => 'cla', 'ClCG07G008800' => 'cla', 'ClCG07G015330' => 'cla', 'COL.COLO4_13698' => 'col', 'COL.COLO4_16659' => 'col', 'COL.COLO4_21986' => 'col', 'COL.COLO4_24049' => 'col', 'COL.COLO4_29061' => 'col', 'COL.COLO4_29075' => 'col', 'COL.COLO4_30094' => 'col', 'Cpa.g.c33689' => 'cpa', 'Cpa.g.sc108.39' => 'cpa', 'Cpa.g.sc108.41' => 'cpa', 'Cpa.g.sc1163.1' => 'cpa', 'Cpa.g.sc4.155' => 'cpa', 'Cpa.g.sc6.194' => 'cpa', 'CsaV3_1G000340' => 'csa', 'CsaV3_1G001400' => 'csa', 'CsaV3_4G002220' => 'csa', 'CsaV3_4G005370' => 'csa', 'CSS0007487' => 'camsi', 'CSS0008066' => 'camsi', 'CSS0009120' => 'camsi', 'CSS0015512' => 'camsi', 'CSS0022409' => 'camsi', 'CSS0025358' => 'camsi', 'CSS0044547' => 'camsi', 'DCAR_013057' => 'dca', 'DCAR_015058' => 'dca', 'DCAR_016027' => 'dca', 'DCAR_017327' => 'dca', 'DCAR_020743' => 'dca', 'DCAR_026157' => 'dca', 'DCAR_032339' => 'dca', 'DCAR_032340' => 'dca', 'Dinv11200' => 'din', 'Dinv11201' => 'din', 'Dinv20631' => 'din', 'Dinv23182' => 'din', 'Dinv33466' => 'din', 'Dinv33583' => 'din', 'Dinv38565' => 'din', 'Duzib068G0200' => 'dzi', 'Duzib147G0132' => 'dzi', 'Duzib147G0635' => 'dzi', 'Duzib205G1670' => 'dzi', 'Duzib251G0606' => 'dzi', 'ECA232G3336' => 'eca', 'ECA232G3763' => 'eca', 'ECA232G4845' => 'eca', 'ECA234G1607' => 'eca', 'ECA246G0932' => 'eca', 'ECA247G0781' => 'eca', 'ECA247G1932' => 'eca', 'ECA247G2079' => 'eca', 'ECA247G3338' => 'eca', 'ECA247G4115' => 'eca', 'EL10Ac3g06552' => 'bvu', 'EL10Ac5g10721' => 'bvu', 'EL10Ac5g10722' => 'bvu', 'EL10Ac5g10723' => 'bvu', 'EL10Ac5g11361' => 'bvu', 'EL10Ac6g13553' => 'bvu', 'EL10As8g23872' => 'bvu', 'Eucgr.B00250' => 'egr', 'Eucgr.B00251' => 'egr', 'Eucgr.B03533' => 'egr', 'Eucgr.I02381' => 'egr', 'Eucgr.K02700' => 'egr', 'FAN02G0174' => 'fan', 'FAN02G3146' => 'fan', 'FAN04G1672' => 'fan', 'FAN04G2273' => 'fan', 'FAN05G2791' => 'fan', 'FAN05G4035' => 'fan', 'FAN07G0834' => 'fan', 'FAN08G1198' => 'fan', 'FAN09G4182' => 'fan', 'FAN12G0496' => 'fan', 'FAN13G1027' => 'fan', 'FAN13G2951' => 'fan', 'FAN14G0705' => 'fan', 'FAN14G0720' => 'fan', 'FAN17G0201' => 'fan', 'FAN17G2665' => 'fan', 'FAN18G1456' => 'fan', 'FAN18G1525' => 'fan', 'FAN18G3500' => 'fan', 'FAN28G2670' => 'fan', 'FvH4_1g12391' => 'fve', 'FvH4_4g23220' => 'fve', 'FvH4_5g08810' => 'fve', 'FvH4_5g28960' => 'fve', 'FvH4_6g42820' => 'fve', 'FvH4_6g51110' => 'fve', 'Glyma.02G051802' => 'gma', 'Glyma.04G185300' => 'gma', 'Glyma.05G202900' => 'gma', 'Glyma.08G010300' => 'gma', 'Glyma.16G131900' => 'gma', 'Glyma.17G087900' => 'gma', 'Gohir.A07G048600' => 'ghi', 'Gohir.A11G179000' => 'ghi', 'Gohir.A12G140900' => 'ghi', 'Gohir.A12G140950' => 'ghi', 'Gohir.A12G191700' => 'ghi', 'Gohir.A13G086300' => 'ghi', 'Gohir.D07G052900' => 'ghi', 'Gohir.D11G186600' => 'ghi', 'Gohir.D12G145575' => 'ghi', 'Gohir.D12G145650' => 'ghi', 'Gohir.D12G145725' => 'ghi', 'Gohir.D12G194050' => 'ghi', 'Gohir.D13G091800' => 'ghi', 'Gorai.001G055900' => 'gra', 'Gorai.007G198400' => 'gra', 'Gorai.008G157000' => 'gra', 'Gorai.008G157100' => 'gra', 'Gorai.008G208700' => 'gra', 'Gorai.010G138700' => 'gra', 'GSVIVG01000977001' => 'vvi', 'GSVIVG01007708001' => 'vvi', 'GSVIVG01008587001' => 'vvi', 'GSVIVG01018849001' => 'vvi', 'GSVIVG01032432001' => 'vvi', 'HanXRQChr02g0034131' => 'han', 'HanXRQChr02g0035981' => 'han', 'HanXRQChr02g0035991' => 'han', 'HanXRQChr05g0155611' => 'han', 'HanXRQChr05g0155621' => 'han', 'HanXRQChr08g0236501' => 'han', 'HanXRQChr09g0261321' => 'han', 'HanXRQChr09g0272081' => 'han', 'HanXRQChr10g0310741' => 'han', 'HanXRQChr11g0325591' => 'han', 'HanXRQChr12g0385691' => 'han', 'HanXRQChr13g0387801' => 'han', 'HanXRQChr15g0463011' => 'han', 'Haze_03826' => 'cav', 'Haze_03827' => 'cav', 'Haze_07183' => 'cav', 'Haze_07537' => 'cav', 'Haze_07539' => 'cav', 'Haze_12461' => 'cav', 'Haze_16115' => 'cav', 'Haze_16808' => 'cav', 'Haze_18531' => 'cav', 'Hma1.2p1_0046F.1_g026700' => 'hma', 'Hma1.2p1_0046F.1_g026710' => 'hma', 'Hma1.2p1_0168F.1_g074340' => 'hma', 'Hma1.2p1_0266F.1_g107030' => 'hma', 'Hma1.2p1_0266F.1_g107060' => 'hma', 'Hma1.2p1_0275F.1_g110510' => 'hma', 'Hma1.2p1_0592F.1_g185490' => 'hma', 'Hma1.2p1_0592F.1_g185500' => 'hma', 'Hma1.2p1_0592F.1_g185510' => 'hma', 'Hma1.2p1_0592F.1_g185520' => 'hma', 'Hma1.2p1_0592F.1_g185530' => 'hma', 'Hma1.2p1_0818F.1_g223450' => 'hma', 'HPP92_009708' => 'vpl', 'HPP92_009793' => 'vpl', 'HPP92_009796' => 'vpl', 'HPP92_009797' => 'vpl', 'HPP92_014940' => 'vpl', 'HPP92_014988' => 'vpl', 'Hund02463' => 'sun', 'Hund02760' => 'sun', 'Hund05071' => 'sun', 'Hund10108' => 'sun', 'Hund11204' => 'sun', 'Hund14016' => 'sun', 'Hund16464' => 'sun', 'Lalb_Chr09g0333391' => 'lal', 'Lalb_Chr11g0070461' => 'lal', 'Lalb_Chr12g0201671' => 'lal', 'Lalb_Chr13g0297161' => 'lal', 'Lj1g0002823' => 'lja', 'Lj3C1074T6' => 'lonja', 'Lj4A212T28' => 'lonja', 'Lj4g0005516' => 'lja', 'Lj4g0013705' => 'lja', 'Lj4g0027865' => 'lja', 'Lj5C92G16' => 'lonja', 'Lj5C92T12' => 'lonja', 'Lj7C596T3' => 'lonja', 'Lj9A446G59' => 'lonja', 'Lj9A482G21' => 'lonja', 'Lsat_1_v5_gn_1_28261' => 'lsa', 'Lsat_1_v5_gn_1_28281' => 'lsa', 'Lsat_1_v5_gn_1_32721' => 'lsa', 'Lsat_1_v5_gn_4_151760' => 'lsa', 'Lsat_1_v5_gn_4_2120' => 'lsa', 'Lsat_1_v5_gn_4_75761' => 'lsa', 'Lsat_1_v5_gn_5_10920' => 'lsa', 'Manes.02G099900' => 'mes', 'Manes.11G096200' => 'mes', 'Manes.12G007200' => 'mes', 'Manes.14G048300' => 'mes', 'Manes.17G114700' => 'mes', 'Mapoly0002s0070' => 'mpo', 'Mapoly0029s0099' => 'mpo', 'MBI07_g24742_MAGBIO' => 'mbi', 'MBI10_g27988_MAGBIO' => 'mbi', 'MBI11_g13057_MAGBIO' => 'mbi', 'MD02G1137200' => 'mdo', 'MD06G1137200' => 'mdo', 'MD07G1122300' => 'mdo', 'MD09G1078200' => 'mdo', 'MD13G1123700' => 'mdo', 'MD14G1151900' => 'mdo', 'MD17G1030900' => 'mdo', 'MD17G1068200' => 'mdo', 'MD17G1068600' => 'mdo', 'Medtr3g077540' => 'mtr', 'Medtr4g105530' => 'mtr', 'Medtr8g076580' => 'mtr', 'Medtr8g076590' => 'mtr', 'Medtr8g096410' => 'mtr', 'MELO3C016411.2' => 'cme', 'MELO3C017780.2' => 'cme', 'MELO3C022560.2' => 'cme', 'MELO3C026187.2' => 'cme', 'MELO3C026286.2' => 'cme', 'MELO3C032854.2' => 'cme', 'Migut.H02495' => 'egut', 'Migut.I00561' => 'egut', 'Migut.K01015' => 'egut', 'Migut.K01016' => 'egut', 'Migut.L00743' => 'egut', 'Migut.L00744' => 'egut', 'Migut.L00746' => 'egut', 'Migut.L00798' => 'egut', 'Migut.L00799' => 'egut', 'Migut.N02096' => 'egut', 'MSTRG.11259' => 'ama', 'MSTRG.23142' => 'ama', 'MSTRG.2499' => 'ama', 'Nitab4.5_0000003g0730' => 'nta', 'Nitab4.5_0000137g0020' => 'nta', 'Nitab4.5_0000721g0210' => 'nta', 'Nitab4.5_0000723g0050' => 'nta', 'Nitab4.5_0000913g0070' => 'nta', 'Nitab4.5_0001332g0040' => 'nta', 'Nitab4.5_0001771g0050' => 'nta', 'Nitab4.5_0001918g0050' => 'nta', 'Nitab4.5_0002686g0030' => 'nta', 'Nitab4.5_0003156g0020' => 'nta', 'Nitab4.5_0003383g0040' => 'nta', 'Nitab4.5_0003918g0010' => 'nta', 'Nitab4.5_0006760g0010' => 'nta', 'Nn1g05981' => 'nnu', 'Nn1g06288' => 'nnu', 'Nn3g16371' => 'nnu', 'Nn3g16786' => 'nnu', 'Nn4g22232' => 'nnu', 'Oeu005144.1' => 'oeu', 'Oeu005145.1' => 'oeu', 'Oeu011348.1' => 'oeu', 'Oeu016415.1' => 'oeu', 'Oeu023501.1' => 'oeu', 'Oeu044473.1' => 'oeu', 'Oeu048892.2' => 'oeu', 'Os01g0549200' => 'osa', 'Os02g0469300' => 'osa', 'Os04g0311100' => 'osa', 'Os06g0474900' => 'osa', 'Os10g0181700' => 'osa', 'Os11g0454800' => 'osa', 'Peaxi162Scf00037g00714' => 'pax', 'Peaxi162Scf00084g01217' => 'pax', 'Peaxi162Scf00257g00217' => 'pax', 'Peaxi162Scf00516g00215' => 'pax', 'Peaxi162Scf00689g00123' => 'pax', 'PGR044G2719' => 'pgr', 'PGR083G1360' => 'pgr', 'PGR102G2849' => 'pgr', 'PGR119G2534' => 'pgr', 'PGSC0003DMG400003538' => 'stu', 'PGSC0003DMG400028138' => 'stu', 'PGSC0003DMG400031732' => 'stu', 'PGSC0003DMG400038165' => 'stu', 'Phvul.002G284600' => 'pvu', 'Phvul.003G258200' => 'pvu', 'Phvul.009G176500' => 'pvu', 'Potri.003G167201' => 'ptr', 'Potri.005G118400' => 'ptr', 'Potri.012G089000' => 'ptr', 'Potri.012G102800' => 'ptr', 'Potri.015G079400' => 'ptr', 'Potri.015G100900' => 'ptr', 'Pp3c14_9810' => 'ppa', 'Pp3c15_10450' => 'ppa', 'Pp3c20_19150' => 'ppa', 'Pp3c23_12740' => 'ppa', 'Pp3c23_6310' => 'ppa', 'Pp3c24_3720' => 'ppa', 'Pp3c27_2580' => 'ppa', 'Pp3c9_8990' => 'ppa', 'PRCOL_00002854' => 'pco', 'Prupe.1G221200' => 'ppe', 'Prupe.3G289000' => 'ppe', 'Prupe.5G147000' => 'ppe', 'Prupe.6G157300' => 'ppe', 'Prupe.7G163400' => 'ppe', 'Psat0s2177g0040' => 'psa', 'Psat3g174760' => 'psa', 'Psat3g192160' => 'psa', 'Psat4g058520' => 'psa', 'Psat4g096840' => 'psa', 'Psat7g037320' => 'psa', 'PSO017G1274' => 'pso', 'PSO017G5166' => 'pso', 'PSO063G4558' => 'pso', 'PSO170G4458' => 'pso', 'PSO170G5005' => 'pso', 'PSO210G6156' => 'pso', 'PSO210G6635' => 'pso', 'PSO210G7397' => 'pso', 'PSO210G7700' => 'pso', 'PSO455G0035' => 'pso', 'PSO455G0180' => 'pso', 'PSO478G4515' => 'pso', 'PSO832G1305' => 'pso', 'PSO832G3489' => 'pso', 'QL02p075247' => 'qlo', 'QL03p051148' => 'qlo', 'QL05p010313' => 'qlo', 'QL06p034627' => 'qlo', 'QL10p001889' => 'qlo', 'QL10p010846' => 'qlo', 'RcHm_v2.0_Chr1g0350621' => 'rch', 'RcHm_v2.0_Chr1g0350641' => 'rch', 'RcHm_v2.0_Chr2g0092891' => 'rch', 'RcHm_v2.0_Chr2g0100251' => 'rch', 'RcHm_v2.0_Chr2g0158661' => 'rch', 'RcHm_v2.0_Chr2g0172741' => 'rch', 'RcHm_v2.0_Chr4g0429571' => 'rch', 'RcHm_v2.0_Chr5g0042471' => 'rch', 'RcHm_v2.0_Chr7g0189451' => 'rch', 'Rhsim08G0052000' => 'rsi', 'Rhsim08G0174400' => 'rsi', 'Rhsim08G0193200' => 'rsi', 'Rhsim10G0214800' => 'rsi', 'Rhsim10G0214900' => 'rsi', 'Rhsim10G0215000' => 'rsi', 'Rhsim12G0022900' => 'rsi', 'Rhsim12G0177500' => 'rsi', 'Rhsim12G0177700' => 'rsi', 'Sabra03G0122600' => 'sbr', 'Sabra05G0097400' => 'sbr', 'Sabra12G0064100' => 'sbr', 'Sabra15G0121300' => 'sbr', 'SalBow2G0642' => 'sbo', 'SalBow5G2667' => 'sbo', 'SalBow5G4873' => 'sbo', 'SalBow8G2395' => 'sbo', 'Sc03g0003290' => 'sci', 'Sc10g0010130' => 'sci', 'Sc22g0003650' => 'sci', 'Sed0001603' => 'sed', 'Sed0004259' => 'sed', 'Sed0006789' => 'sed', 'Sed0011838' => 'sed', 'Sed0012964' => 'sed', 'Sed0016383' => 'sed', 'Sed0019010' => 'sed', 'Sed0020188' => 'sed', 'SEGI_04702' => 'sgi', 'SEGI_17231' => 'sgi', 'SEGI_18877' => 'sgi', 'SEGI_25196' => 'sgi', 'SEGI_25515' => 'sgi', 'SEGI_28445' => 'sgi', 'SEGI_37452' => 'sgi', 'SGA_v2.0_scaffold188G40336' => 'sas', 'SGA_v2.0_scaffold228G43247' => 'sas', 'SGA_v2.0_scaffold280G46853' => 'sas', 'SGA_v2.0_scaffold34G13808' => 'sas', 'SGA_v2.0_scaffold40G15576' => 'sas', 'SGA_v2.0_scaffold611G53188' => 'sas', 'SGA_v2.0_scaffold78G25461' => 'sas', 'SGA_v2.0_scaffold90G27888' => 'sas', 'SHI08601' => 'shi', 'SHI08606' => 'shi', 'SHI17117' => 'shi', 'SHI17119' => 'shi', 'SMO118G0201' => 'smo', 'SMO169G0247' => 'smo', 'SMO176G0006' => 'smo', 'SMO176G0015' => 'smo', 'SMO202G0006' => 'smo', 'SMO240G0050' => 'smo', 'SMO286G0009' => 'smo', 'SMO338G0033' => 'smo', 'SMO356G0533' => 'smo', 'SMO364G0382' => 'smo', 'SMO367G0166' => 'smo', 'SMO367G1098' => 'smo', 'Solyc01g009920.3' => 'sly', 'Solyc01g099300.3' => 'sly', 'Solyc02g084700.3' => 'sly', 'Solyc03g097520.3' => 'sly', 'Solyc06g071580.3' => 'sly', 'Solyc10g081760.3' => 'sly', 'Sopen01g005480' => 'spe', 'Sopen01g042850' => 'spe', 'Sopen02g029370' => 'spe', 'Sopen03g028280' => 'spe', 'Sopen06g027870' => 'spe', 'Sopen10g032270' => 'spe', 'Sp5g18180' => 'spa', 'Sp6g12880' => 'spa', 'Sp6g30850' => 'spa', 'Sp7g22960' => 'spa', 'Sp7g34010' => 'spa', 'SpUn1326_0010' => 'spa', 'TAR371G0242' => 'tar', 'TAR622G0638' => 'tar', 'TAR628G1548' => 'tar', 'TAR629G1079' => 'tar', 'TAR629G3413' => 'tar', 'THA.LOC104804249' => 'tha', 'THA.LOC104808315' => 'tha', 'THA.LOC104809238' => 'tha', 'THA.LOC104825484' => 'tha', 'Thecc.01G025500' => 'tca', 'Thecc.03G015800' => 'tca', 'Thecc.03G018000' => 'tca', 'Thecc.03G134800' => 'tca', 'Thecc.04G014700' => 'tca', 'Thhalv10006991m.g' => 'esa', 'Thhalv10012707m.g' => 'esa', 'Thhalv10015739m.g' => 'esa', 'Thhalv10024553m.g' => 'esa', 'Thhalv10024673m.g' => 'esa', 'Thhalv10029187m.g' => 'esa', 'TPR.G12971' => 'tpr', 'TPR.G29396' => 'tpr', 'TPR.G33376' => 'tpr', 'TPR.G35508' => 'tpr', 'TPR.G35516' => 'tpr', 'TPR.G37317' => 'tpr', 'TPR.G37389' => 'tpr', 'TPR.G37523' => 'tpr', 'TPR.G559' => 'tpr', 'TWI14G0070' => 'twi', 'TWI14G0729' => 'twi', 'TWI18G0596' => 'twi', 'TWI39G0780' => 'twi', 'TWI39G0850' => 'twi', 'TWI73G1052' => 'twi', 'unitig_52.g17485' => 'ugi', 'unitig_61.g26355' => 'ugi', 'vmacro01040' => 'vma', 'vmacro16731' => 'vma', 'vmacro18270' => 'vma', 'vmacro19142' => 'vma', 'vmacro19407' => 'vma', 'vmacro19408' => 'vma', 'vmacro21899' => 'vma', 'vmacro21900' => 'vma', 'vmacro21901' => 'vma', 'VMungo0251G0490' => 'vmu', 'VMungo0251G1748' => 'vmu', 'VMungo1309G0421' => 'vmu', 'Zm00001eb086500' => 'zma', 'Zm00001eb150680' => 'zma', 'Zm00001eb162330' => 'zma', 'Zm00001eb203130' => 'zma', 'Zm00001eb369480' => 'zma', 'Zm00001eb382340' => 'zma', 'Zm00001eb416360' => 'zma' ), 'gf_id' => 'HOM05D000902', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000902' ), 'data_identifier' => 'HOM05D000902', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000902', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '663', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02470' => 'bna', 'A01p16260' => 'bna', 'A02p01680' => 'bna', 'A03p16600' => 'bna', 'A03p55660' => 'bna', 'A03p64160' => 'bna', 'A03p64170' => 'bna', 'A08p31900' => 'bna', 'A09p59530' => 'bna', 'A10p08230' => 'bna', 'A10p25090' => 'bna', 'Aa31LG3G7100' => 'aar', 'Aa31LG3G7110' => 'aar', 'Aa31LG6G13160' => 'aar', 'Aa31LG7G10770' => 'aar', 'Aa31LG7G3830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2723' => 'aag', 'Actinidia08045' => 'ach', 'Actinidia08888' => 'ach', 'Actinidia18333' => 'ach', 'Actinidia19334' => 'ach', 'Actinidia25552' => 'ach', 'Actinidia26089' => 'ach', 'Actinidia30615' => 'ach', 'Actinidia30616' => 'ach', 'Actinidia33083' => 'ach', 'Actinidia35762' => 'ach', 'Ah.02g110620' => 'amhyb', 'Ah.11g046390' => 'amhyb', 'AL1G31670' => 'aly', 'AL6G23730' => 'aly', 'AL7G14740' => 'aly', 'AL7G14750' => 'aly', 'AL7G14760' => 'aly', 'AL7G28220' => 'aly', 'AL8G24940' => 'aly', 'Aqoxy3G01665' => 'aox', 'Aqoxy3G02853' => 'aox', 'Aqoxy5G01513' => 'aox', 'Aqoxy5G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8SKA4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ75LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKDA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0LJZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7REX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZP4YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWX7I5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2QKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS0L9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPCD8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q161UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC7XCF' => 'arhy', 'AT1G19100' => 'ath', 'AT4G24970' => 'ath', 'AT4G36270' => 'ath', 'AT4G36280' => 'ath', 'AT4G36290' => 'ath', 'AT5G13130' => 'ath', 'AT5G50780' => 'ath', 'ATR0582G266' => 'atr', 'ATR0661G195' => 'atr', 'ATR1152G031' => 'atr', 'Atru.chr11.2382' => 'acertr', 'Atru.chr12.2337' => 'acertr', 'Atru.chr3.744' => 'acertr', 'Atru.chr6.1870' => 'acertr', 'Atru.chr9.2515' => 'acertr', 'AUR62004120' => 'cqu', 'AUR62005667' => 'cqu', 'AUR62007634' => 'cqu', 'AUR62008186' => 'cqu', 'AUR62008187' => 'cqu', 'AUR62008188' => 'cqu', 'AUR62027954' => 'cqu', 'AUR62028766' => 'cqu', 'AUR62028767' => 'cqu', 'AUR62028768' => 'cqu', 'AUR62028886' => 'cqu', 'AUR62029563' => 'cqu', 'AUR62038832' => 'cqu', 'BcaB01g04149' => 'bca', 'BcaB03g12940' => 'bca', 'BcaB03g13090' => 'bca', 'BcaB03g14466' => 'bca', 'BcaB05g24035' => 'bca', 'BcaC01g06050' => 'bca', 'BcaC04g19148' => 'bca', 'BcaC04g20761' => 'bca', 'BcaC06g32845' => 'bca', 'BcaC07g41274' => 'bca', 'BcaC09g50827' => 'bca', 'BcaNung00741' => 'bca', 'BcaNung00742' => 'bca', 'BcaNung01859' => 'bca', 'BcaNung03985' => 'bca', 'BcaNung03989' => 'bca', 'BcaNung05661' => 'bca', 'BolC1t00257H' => 'bol', 'BolC1t01956H' => 'bol', 'BolC2t06534H' => 'bol', 'BolC3t14334H' => 'bol', 'BolC5t30451H' => 'bol', 'BolC7t45880H' => 'bol', 'BolC7t46586H' => 'bol', 'BolC8t49301H' => 'bol', 'BolC8t51837H' => 'bol', 'BolC9t56822H' => 'bol', 'BolC9t59235H' => 'bol', 'BraA01t00234Z' => 'bra', 'BraA01t01563Z' => 'bra', 'BraA02t05147Z' => 'bra', 'BraA03t10947Z' => 'bra', 'BraA03t14633Z' => 'bra', 'BraA08t35112Z' => 'bra', 'BraA09t41330Z' => 'bra', 'BraA10t44570Z' => 'bra', 'C01p02670' => 'bna', 'C01p20260' => 'bna', 'C02p05890' => 'bna', 'C03p19530' => 'bna', 'C05p17470' => 'bna', 'C07p53900' => 'bna', 'C07p61630' => 'bna', 'C08p16800' => 'bna', 'C08p42810' => 'bna', 'C09p39480' => 'bna', 'C09p63980' => 'bna', 'CAN.G1001.7' => 'can', 'CAN.G1034.55' => 'can', 'CAN.G143.7' => 'can', 'CAN.G3340.1' => 'can', 'CAN.G358.19' => 'can', 'CAN.G373.2' => 'can', 'CAN.G674.16' => 'can', 'CAN.G674.17' => 'can', 'CAN.G674.18' => 'can', 'CAN.G732.2' => 'can', 'CAN.G732.3' => 'can', 'CAN.G993.39' => 'can', 'CANSAT01G2052' => 'cansat', 'CANSAT80G0070' => 'cansat', 'CANSAT80G0483' => 'cansat', 'CANSAT80G0625' => 'cansat', 'CARHR019690' => 'chi', 'CARHR080280' => 'chi', 'CARHR152750' => 'chi', 'CARHR152760' => 'chi', 'CARHR152770' => 'chi', 'CARHR200340' => 'chi', 'CARHR232370' => 'chi', 'CARHR244670' => 'chi', 'CARHR244680' => 'chi', 'CARHR257520' => 'chi', 'Carub.0001s1872' => 'cru', 'Carub.0006s1130' => 'cru', 'Carub.0007s0396' => 'cru', 'Carub.0007s0397' => 'cru', 'Carub.0007s1608' => 'cru', 'Carub.0008s1068' => 'cru', 'Carub.0008s1077' => 'cru', 'Ca_16158_v3' => 'car', 'Ca_17571_v3' => 'car', 'Ca_21936_v3' => 'car', 'Ca_22350_v3' => 'car', 'CBR_g22445' => 'cbr', 'CBR_g26290' => 'cbr', 'Cc04_g09610' => 'ccan', 'Cc04_g12280' => 'ccan', 'Cc07_g10230' => 'ccan', 'CDE02G0093' => 'cde', 'CDE02G0701' => 'cde', 'CDE04G1050' => 'cde', 'CDE05G1833' => 'cde', 'CDE05G3058' => 'cde', 'CDE05G3380' => 'cde', 'CDE06G0536' => 'cde', 'Cfa006923' => 'cfa', 'Cfa009402' => 'cfa', 'Cfa018751' => 'cfa', 'Cfa019164' => 'cfa', 'Cfa022935' => 'cfa', 'Ciclev10019081m.g' => 'ccl', 'Ciclev10025076m.g' => 'ccl', 'Ciclev10030712m.g' => 'ccl', 'Ciclev10033760m.g' => 'ccl', 'CiPaw.05G105600' => 'cil', 'CiPaw.08G136700' => 'cil', 'CiPaw.11G003900' => 'cil', 'CiPaw.11G023700' => 'cil', 'CiPaw.12G003700' => 'cil', 'ClCG06G017100' => 'cla', 'ClCG06G018110' => 'cla', 'ClCG07G008800' => 'cla', 'ClCG07G015330' => 'cla', 'COL.COLO4_13698' => 'col', 'COL.COLO4_16659' => 'col', 'COL.COLO4_21986' => 'col', 'COL.COLO4_24049' => 'col', 'COL.COLO4_29061' => 'col', 'COL.COLO4_29075' => 'col', 'COL.COLO4_30094' => 'col', 'Cpa.g.c33689' => 'cpa', 'Cpa.g.sc108.39' => 'cpa', 'Cpa.g.sc108.41' => 'cpa', 'Cpa.g.sc1163.1' => 'cpa', 'Cpa.g.sc4.155' => 'cpa', 'Cpa.g.sc6.194' => 'cpa', 'CsaV3_1G000340' => 'csa', 'CsaV3_1G001400' => 'csa', 'CsaV3_4G002220' => 'csa', 'CsaV3_4G005370' => 'csa', 'CSS0007487' => 'camsi', 'CSS0008066' => 'camsi', 'CSS0009120' => 'camsi', 'CSS0015512' => 'camsi', 'CSS0022409' => 'camsi', 'CSS0025358' => 'camsi', 'CSS0044547' => 'camsi', 'DCAR_013057' => 'dca', 'DCAR_015058' => 'dca', 'DCAR_016027' => 'dca', 'DCAR_017327' => 'dca', 'DCAR_020743' => 'dca', 'DCAR_026157' => 'dca', 'DCAR_032339' => 'dca', 'DCAR_032340' => 'dca', 'Dinv11200' => 'din', 'Dinv11201' => 'din', 'Dinv20631' => 'din', 'Dinv23182' => 'din', 'Dinv33466' => 'din', 'Dinv33583' => 'din', 'Dinv38565' => 'din', 'Duzib068G0200' => 'dzi', 'Duzib147G0132' => 'dzi', 'Duzib147G0635' => 'dzi', 'Duzib205G1670' => 'dzi', 'Duzib251G0606' => 'dzi', 'ECA232G3336' => 'eca', 'ECA232G3763' => 'eca', 'ECA232G4845' => 'eca', 'ECA234G1607' => 'eca', 'ECA246G0932' => 'eca', 'ECA247G0781' => 'eca', 'ECA247G1932' => 'eca', 'ECA247G2079' => 'eca', 'ECA247G3338' => 'eca', 'ECA247G4115' => 'eca', 'EL10Ac3g06552' => 'bvu', 'EL10Ac5g10721' => 'bvu', 'EL10Ac5g10722' => 'bvu', 'EL10Ac5g10723' => 'bvu', 'EL10Ac5g11361' => 'bvu', 'EL10Ac6g13553' => 'bvu', 'EL10As8g23872' => 'bvu', 'Eucgr.B00250' => 'egr', 'Eucgr.B00251' => 'egr', 'Eucgr.B03533' => 'egr', 'Eucgr.I02381' => 'egr', 'Eucgr.K02700' => 'egr', 'FAN02G0174' => 'fan', 'FAN02G3146' => 'fan', 'FAN04G1672' => 'fan', 'FAN04G2273' => 'fan', 'FAN05G2791' => 'fan', 'FAN05G4035' => 'fan', 'FAN07G0834' => 'fan', 'FAN08G1198' => 'fan', 'FAN09G4182' => 'fan', 'FAN12G0496' => 'fan', 'FAN13G1027' => 'fan', 'FAN13G2951' => 'fan', 'FAN14G0705' => 'fan', 'FAN14G0720' => 'fan', 'FAN17G0201' => 'fan', 'FAN17G2665' => 'fan', 'FAN18G1456' => 'fan', 'FAN18G1525' => 'fan', 'FAN18G3500' => 'fan', 'FAN28G2670' => 'fan', 'FvH4_1g12391' => 'fve', 'FvH4_4g23220' => 'fve', 'FvH4_5g08810' => 'fve', 'FvH4_5g28960' => 'fve', 'FvH4_6g42820' => 'fve', 'FvH4_6g51110' => 'fve', 'Glyma.02G051802' => 'gma', 'Glyma.04G185300' => 'gma', 'Glyma.05G202900' => 'gma', 'Glyma.08G010300' => 'gma', 'Glyma.16G131900' => 'gma', 'Glyma.17G087900' => 'gma', 'Gohir.A07G048600' => 'ghi', 'Gohir.A11G179000' => 'ghi', 'Gohir.A12G140900' => 'ghi', 'Gohir.A12G140950' => 'ghi', 'Gohir.A12G191700' => 'ghi', 'Gohir.A13G086300' => 'ghi', 'Gohir.D07G052900' => 'ghi', 'Gohir.D11G186600' => 'ghi', 'Gohir.D12G145575' => 'ghi', 'Gohir.D12G145650' => 'ghi', 'Gohir.D12G145725' => 'ghi', 'Gohir.D12G194050' => 'ghi', 'Gohir.D13G091800' => 'ghi', 'Gorai.001G055900' => 'gra', 'Gorai.007G198400' => 'gra', 'Gorai.008G157000' => 'gra', 'Gorai.008G157100' => 'gra', 'Gorai.008G208700' => 'gra', 'Gorai.010G138700' => 'gra', 'GSVIVG01000977001' => 'vvi', 'GSVIVG01007708001' => 'vvi', 'GSVIVG01008587001' => 'vvi', 'GSVIVG01018849001' => 'vvi', 'GSVIVG01032432001' => 'vvi', 'HanXRQChr02g0034131' => 'han', 'HanXRQChr02g0035981' => 'han', 'HanXRQChr02g0035991' => 'han', 'HanXRQChr05g0155611' => 'han', 'HanXRQChr05g0155621' => 'han', 'HanXRQChr08g0236501' => 'han', 'HanXRQChr09g0261321' => 'han', 'HanXRQChr09g0272081' => 'han', 'HanXRQChr10g0310741' => 'han', 'HanXRQChr11g0325591' => 'han', 'HanXRQChr12g0385691' => 'han', 'HanXRQChr13g0387801' => 'han', 'HanXRQChr15g0463011' => 'han', 'Haze_03826' => 'cav', 'Haze_03827' => 'cav', 'Haze_07183' => 'cav', 'Haze_07537' => 'cav', 'Haze_07539' => 'cav', 'Haze_12461' => 'cav', 'Haze_16115' => 'cav', 'Haze_16808' => 'cav', 'Haze_18531' => 'cav', 'Hma1.2p1_0046F.1_g026700' => 'hma', 'Hma1.2p1_0046F.1_g026710' => 'hma', 'Hma1.2p1_0168F.1_g074340' => 'hma', 'Hma1.2p1_0266F.1_g107030' => 'hma', 'Hma1.2p1_0266F.1_g107060' => 'hma', 'Hma1.2p1_0275F.1_g110510' => 'hma', 'Hma1.2p1_0592F.1_g185490' => 'hma', 'Hma1.2p1_0592F.1_g185500' => 'hma', 'Hma1.2p1_0592F.1_g185510' => 'hma', 'Hma1.2p1_0592F.1_g185520' => 'hma', 'Hma1.2p1_0592F.1_g185530' => 'hma', 'Hma1.2p1_0818F.1_g223450' => 'hma', 'HPP92_009708' => 'vpl', 'HPP92_009793' => 'vpl', 'HPP92_009796' => 'vpl', 'HPP92_009797' => 'vpl', 'HPP92_014940' => 'vpl', 'HPP92_014988' => 'vpl', 'Hund02463' => 'sun', 'Hund02760' => 'sun', 'Hund05071' => 'sun', 'Hund10108' => 'sun', 'Hund11204' => 'sun', 'Hund14016' => 'sun', 'Hund16464' => 'sun', 'Lalb_Chr09g0333391' => 'lal', 'Lalb_Chr11g0070461' => 'lal', 'Lalb_Chr12g0201671' => 'lal', 'Lalb_Chr13g0297161' => 'lal', 'Lj1g0002823' => 'lja', 'Lj3C1074T6' => 'lonja', 'Lj4A212T28' => 'lonja', 'Lj4g0005516' => 'lja', 'Lj4g0013705' => 'lja', 'Lj4g0027865' => 'lja', 'Lj5C92G16' => 'lonja', 'Lj5C92T12' => 'lonja', 'Lj7C596T3' => 'lonja', 'Lj9A446G59' => 'lonja', 'Lj9A482G21' => 'lonja', 'Lsat_1_v5_gn_1_28261' => 'lsa', 'Lsat_1_v5_gn_1_28281' => 'lsa', 'Lsat_1_v5_gn_1_32721' => 'lsa', 'Lsat_1_v5_gn_4_151760' => 'lsa', 'Lsat_1_v5_gn_4_2120' => 'lsa', 'Lsat_1_v5_gn_4_75761' => 'lsa', 'Lsat_1_v5_gn_5_10920' => 'lsa', 'Manes.02G099900' => 'mes', 'Manes.11G096200' => 'mes', 'Manes.12G007200' => 'mes', 'Manes.14G048300' => 'mes', 'Manes.17G114700' => 'mes', 'Mapoly0002s0070' => 'mpo', 'Mapoly0029s0099' => 'mpo', 'MBI07_g24742_MAGBIO' => 'mbi', 'MBI10_g27988_MAGBIO' => 'mbi', 'MBI11_g13057_MAGBIO' => 'mbi', 'MD02G1137200' => 'mdo', 'MD06G1137200' => 'mdo', 'MD07G1122300' => 'mdo', 'MD09G1078200' => 'mdo', 'MD13G1123700' => 'mdo', 'MD14G1151900' => 'mdo', 'MD17G1030900' => 'mdo', 'MD17G1068200' => 'mdo', 'MD17G1068600' => 'mdo', 'Medtr3g077540' => 'mtr', 'Medtr4g105530' => 'mtr', 'Medtr8g076580' => 'mtr', 'Medtr8g076590' => 'mtr', 'Medtr8g096410' => 'mtr', 'MELO3C016411.2' => 'cme', 'MELO3C017780.2' => 'cme', 'MELO3C022560.2' => 'cme', 'MELO3C026187.2' => 'cme', 'MELO3C026286.2' => 'cme', 'MELO3C032854.2' => 'cme', 'Migut.H02495' => 'egut', 'Migut.I00561' => 'egut', 'Migut.K01015' => 'egut', 'Migut.K01016' => 'egut', 'Migut.L00743' => 'egut', 'Migut.L00744' => 'egut', 'Migut.L00746' => 'egut', 'Migut.L00798' => 'egut', 'Migut.L00799' => 'egut', 'Migut.N02096' => 'egut', 'MSTRG.11259' => 'ama', 'MSTRG.23142' => 'ama', 'MSTRG.2499' => 'ama', 'Nitab4.5_0000003g0730' => 'nta', 'Nitab4.5_0000137g0020' => 'nta', 'Nitab4.5_0000721g0210' => 'nta', 'Nitab4.5_0000723g0050' => 'nta', 'Nitab4.5_0000913g0070' => 'nta', 'Nitab4.5_0001332g0040' => 'nta', 'Nitab4.5_0001771g0050' => 'nta', 'Nitab4.5_0001918g0050' => 'nta', 'Nitab4.5_0002686g0030' => 'nta', 'Nitab4.5_0003156g0020' => 'nta', 'Nitab4.5_0003383g0040' => 'nta', 'Nitab4.5_0003918g0010' => 'nta', 'Nitab4.5_0006760g0010' => 'nta', 'Nn1g05981' => 'nnu', 'Nn1g06288' => 'nnu', 'Nn3g16371' => 'nnu', 'Nn3g16786' => 'nnu', 'Nn4g22232' => 'nnu', 'Oeu005144.1' => 'oeu', 'Oeu005145.1' => 'oeu', 'Oeu011348.1' => 'oeu', 'Oeu016415.1' => 'oeu', 'Oeu023501.1' => 'oeu', 'Oeu044473.1' => 'oeu', 'Oeu048892.2' => 'oeu', 'Os01g0549200' => 'osa', 'Os02g0469300' => 'osa', 'Os04g0311100' => 'osa', 'Os06g0474900' => 'osa', 'Os10g0181700' => 'osa', 'Os11g0454800' => 'osa', 'Peaxi162Scf00037g00714' => 'pax', 'Peaxi162Scf00084g01217' => 'pax', 'Peaxi162Scf00257g00217' => 'pax', 'Peaxi162Scf00516g00215' => 'pax', 'Peaxi162Scf00689g00123' => 'pax', 'PGR044G2719' => 'pgr', 'PGR083G1360' => 'pgr', 'PGR102G2849' => 'pgr', 'PGR119G2534' => 'pgr', 'PGSC0003DMG400003538' => 'stu', 'PGSC0003DMG400028138' => 'stu', 'PGSC0003DMG400031732' => 'stu', 'PGSC0003DMG400038165' => 'stu', 'Phvul.002G284600' => 'pvu', 'Phvul.003G258200' => 'pvu', 'Phvul.009G176500' => 'pvu', 'Potri.003G167201' => 'ptr', 'Potri.005G118400' => 'ptr', 'Potri.012G089000' => 'ptr', 'Potri.012G102800' => 'ptr', 'Potri.015G079400' => 'ptr', 'Potri.015G100900' => 'ptr', 'Pp3c14_9810' => 'ppa', 'Pp3c15_10450' => 'ppa', 'Pp3c20_19150' => 'ppa', 'Pp3c23_12740' => 'ppa', 'Pp3c23_6310' => 'ppa', 'Pp3c24_3720' => 'ppa', 'Pp3c27_2580' => 'ppa', 'Pp3c9_8990' => 'ppa', 'PRCOL_00002854' => 'pco', 'Prupe.1G221200' => 'ppe', 'Prupe.3G289000' => 'ppe', 'Prupe.5G147000' => 'ppe', 'Prupe.6G157300' => 'ppe', 'Prupe.7G163400' => 'ppe', 'Psat0s2177g0040' => 'psa', 'Psat3g174760' => 'psa', 'Psat3g192160' => 'psa', 'Psat4g058520' => 'psa', 'Psat4g096840' => 'psa', 'Psat7g037320' => 'psa', 'PSO017G1274' => 'pso', 'PSO017G5166' => 'pso', 'PSO063G4558' => 'pso', 'PSO170G4458' => 'pso', 'PSO170G5005' => 'pso', 'PSO210G6156' => 'pso', 'PSO210G6635' => 'pso', 'PSO210G7397' => 'pso', 'PSO210G7700' => 'pso', 'PSO455G0035' => 'pso', 'PSO455G0180' => 'pso', 'PSO478G4515' => 'pso', 'PSO832G1305' => 'pso', 'PSO832G3489' => 'pso', 'QL02p075247' => 'qlo', 'QL03p051148' => 'qlo', 'QL05p010313' => 'qlo', 'QL06p034627' => 'qlo', 'QL10p001889' => 'qlo', 'QL10p010846' => 'qlo', 'RcHm_v2.0_Chr1g0350621' => 'rch', 'RcHm_v2.0_Chr1g0350641' => 'rch', 'RcHm_v2.0_Chr2g0092891' => 'rch', 'RcHm_v2.0_Chr2g0100251' => 'rch', 'RcHm_v2.0_Chr2g0158661' => 'rch', 'RcHm_v2.0_Chr2g0172741' => 'rch', 'RcHm_v2.0_Chr4g0429571' => 'rch', 'RcHm_v2.0_Chr5g0042471' => 'rch', 'RcHm_v2.0_Chr7g0189451' => 'rch', 'Rhsim08G0052000' => 'rsi', 'Rhsim08G0174400' => 'rsi', 'Rhsim08G0193200' => 'rsi', 'Rhsim10G0214800' => 'rsi', 'Rhsim10G0214900' => 'rsi', 'Rhsim10G0215000' => 'rsi', 'Rhsim12G0022900' => 'rsi', 'Rhsim12G0177500' => 'rsi', 'Rhsim12G0177700' => 'rsi', 'Sabra03G0122600' => 'sbr', 'Sabra05G0097400' => 'sbr', 'Sabra12G0064100' => 'sbr', 'Sabra15G0121300' => 'sbr', 'SalBow2G0642' => 'sbo', 'SalBow5G2667' => 'sbo', 'SalBow5G4873' => 'sbo', 'SalBow8G2395' => 'sbo', 'Sc03g0003290' => 'sci', 'Sc10g0010130' => 'sci', 'Sc22g0003650' => 'sci', 'Sed0001603' => 'sed', 'Sed0004259' => 'sed', 'Sed0006789' => 'sed', 'Sed0011838' => 'sed', 'Sed0012964' => 'sed', 'Sed0016383' => 'sed', 'Sed0019010' => 'sed', 'Sed0020188' => 'sed', 'SEGI_04702' => 'sgi', 'SEGI_17231' => 'sgi', 'SEGI_18877' => 'sgi', 'SEGI_25196' => 'sgi', 'SEGI_25515' => 'sgi', 'SEGI_28445' => 'sgi', 'SEGI_37452' => 'sgi', 'SGA_v2.0_scaffold188G40336' => 'sas', 'SGA_v2.0_scaffold228G43247' => 'sas', 'SGA_v2.0_scaffold280G46853' => 'sas', 'SGA_v2.0_scaffold34G13808' => 'sas', 'SGA_v2.0_scaffold40G15576' => 'sas', 'SGA_v2.0_scaffold611G53188' => 'sas', 'SGA_v2.0_scaffold78G25461' => 'sas', 'SGA_v2.0_scaffold90G27888' => 'sas', 'SHI08601' => 'shi', 'SHI08606' => 'shi', 'SHI17117' => 'shi', 'SHI17119' => 'shi', 'SMO118G0201' => 'smo', 'SMO169G0247' => 'smo', 'SMO176G0006' => 'smo', 'SMO176G0015' => 'smo', 'SMO202G0006' => 'smo', 'SMO240G0050' => 'smo', 'SMO286G0009' => 'smo', 'SMO338G0033' => 'smo', 'SMO356G0533' => 'smo', 'SMO364G0382' => 'smo', 'SMO367G0166' => 'smo', 'SMO367G1098' => 'smo', 'Solyc01g009920.3' => 'sly', 'Solyc01g099300.3' => 'sly', 'Solyc02g084700.3' => 'sly', 'Solyc03g097520.3' => 'sly', 'Solyc06g071580.3' => 'sly', 'Solyc10g081760.3' => 'sly', 'Sopen01g005480' => 'spe', 'Sopen01g042850' => 'spe', 'Sopen02g029370' => 'spe', 'Sopen03g028280' => 'spe', 'Sopen06g027870' => 'spe', 'Sopen10g032270' => 'spe', 'Sp5g18180' => 'spa', 'Sp6g12880' => 'spa', 'Sp6g30850' => 'spa', 'Sp7g22960' => 'spa', 'Sp7g34010' => 'spa', 'SpUn1326_0010' => 'spa', 'TAR371G0242' => 'tar', 'TAR622G0638' => 'tar', 'TAR628G1548' => 'tar', 'TAR629G1079' => 'tar', 'TAR629G3413' => 'tar', 'THA.LOC104804249' => 'tha', 'THA.LOC104808315' => 'tha', 'THA.LOC104809238' => 'tha', 'THA.LOC104825484' => 'tha', 'Thecc.01G025500' => 'tca', 'Thecc.03G015800' => 'tca', 'Thecc.03G018000' => 'tca', 'Thecc.03G134800' => 'tca', 'Thecc.04G014700' => 'tca', 'Thhalv10006991m.g' => 'esa', 'Thhalv10012707m.g' => 'esa', 'Thhalv10015739m.g' => 'esa', 'Thhalv10024553m.g' => 'esa', 'Thhalv10024673m.g' => 'esa', 'Thhalv10029187m.g' => 'esa', 'TPR.G12971' => 'tpr', 'TPR.G29396' => 'tpr', 'TPR.G33376' => 'tpr', 'TPR.G35508' => 'tpr', 'TPR.G35516' => 'tpr', 'TPR.G37317' => 'tpr', 'TPR.G37389' => 'tpr', 'TPR.G37523' => 'tpr', 'TPR.G559' => 'tpr', 'TWI14G0070' => 'twi', 'TWI14G0729' => 'twi', 'TWI18G0596' => 'twi', 'TWI39G0780' => 'twi', 'TWI39G0850' => 'twi', 'TWI73G1052' => 'twi', 'unitig_52.g17485' => 'ugi', 'unitig_61.g26355' => 'ugi', 'vmacro01040' => 'vma', 'vmacro16731' => 'vma', 'vmacro18270' => 'vma', 'vmacro19142' => 'vma', 'vmacro19407' => 'vma', 'vmacro19408' => 'vma', 'vmacro21899' => 'vma', 'vmacro21900' => 'vma', 'vmacro21901' => 'vma', 'VMungo0251G0490' => 'vmu', 'VMungo0251G1748' => 'vmu', 'VMungo1309G0421' => 'vmu', 'Zm00001eb086500' => 'zma', 'Zm00001eb150680' => 'zma', 'Zm00001eb162330' => 'zma', 'Zm00001eb203130' => 'zma', 'Zm00001eb369480' => 'zma', 'Zm00001eb382340' => 'zma', 'Zm00001eb416360' => 'zma' ) $gf_id = 'HOM05D000902' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000902' ) $data_identifier = 'HOM05D000902' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 13, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 10, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 6, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 9, 'hma' => (int) 12, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 4, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 6, 'ppa' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 6, 'rch' => (int) 9, 'rsi' => (int) 9, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 12, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 3, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416360' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000902', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '663', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02470' => 'bna', 'A01p16260' => 'bna', 'A02p01680' => 'bna', 'A03p16600' => 'bna', 'A03p55660' => 'bna', 'A03p64160' => 'bna', 'A03p64170' => 'bna', 'A08p31900' => 'bna', 'A09p59530' => 'bna', 'A10p08230' => 'bna', 'A10p25090' => 'bna', 'Aa31LG3G7100' => 'aar', 'Aa31LG3G7110' => 'aar', 'Aa31LG6G13160' => 'aar', 'Aa31LG7G10770' => 'aar', 'Aa31LG7G3830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2723' => 'aag', 'Actinidia08045' => 'ach', 'Actinidia08888' => 'ach', 'Actinidia18333' => 'ach', 'Actinidia19334' => 'ach', 'Actinidia25552' => 'ach', 'Actinidia26089' => 'ach', 'Actinidia30615' => 'ach', 'Actinidia30616' => 'ach', 'Actinidia33083' => 'ach', 'Actinidia35762' => 'ach', 'Ah.02g110620' => 'amhyb', 'Ah.11g046390' => 'amhyb', 'AL1G31670' => 'aly', 'AL6G23730' => 'aly', 'AL7G14740' => 'aly', 'AL7G14750' => 'aly', 'AL7G14760' => 'aly', 'AL7G28220' => 'aly', 'AL8G24940' => 'aly', 'Aqoxy3G01665' => 'aox', 'Aqoxy3G02853' => 'aox', 'Aqoxy5G01513' => 'aox', 'Aqoxy5G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8SKA4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ75LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKDA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0LJZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7REX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZP4YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWX7I5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2QKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS0L9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPCD8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q161UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC7XCF' => 'arhy', 'AT1G19100' => 'ath', 'AT4G24970' => 'ath', 'AT4G36270' => 'ath', 'AT4G36280' => 'ath', 'AT4G36290' => 'ath', 'AT5G13130' => 'ath', 'AT5G50780' => 'ath', 'ATR0582G266' => 'atr', 'ATR0661G195' => 'atr', 'ATR1152G031' => 'atr', 'Atru.chr11.2382' => 'acertr', 'Atru.chr12.2337' => 'acertr', 'Atru.chr3.744' => 'acertr', 'Atru.chr6.1870' => 'acertr', 'Atru.chr9.2515' => 'acertr', 'AUR62004120' => 'cqu', 'AUR62005667' => 'cqu', 'AUR62007634' => 'cqu', 'AUR62008186' => 'cqu', 'AUR62008187' => 'cqu', 'AUR62008188' => 'cqu', 'AUR62027954' => 'cqu', 'AUR62028766' => 'cqu', 'AUR62028767' => 'cqu', 'AUR62028768' => 'cqu', 'AUR62028886' => 'cqu', 'AUR62029563' => 'cqu', 'AUR62038832' => 'cqu', 'BcaB01g04149' => 'bca', 'BcaB03g12940' => 'bca', 'BcaB03g13090' => 'bca', 'BcaB03g14466' => 'bca', 'BcaB05g24035' => 'bca', 'BcaC01g06050' => 'bca', 'BcaC04g19148' => 'bca', 'BcaC04g20761' => 'bca', 'BcaC06g32845' => 'bca', 'BcaC07g41274' => 'bca', 'BcaC09g50827' => 'bca', 'BcaNung00741' => 'bca', 'BcaNung00742' => 'bca', 'BcaNung01859' => 'bca', 'BcaNung03985' => 'bca', 'BcaNung03989' => 'bca', 'BcaNung05661' => 'bca', 'BolC1t00257H' => 'bol', 'BolC1t01956H' => 'bol', 'BolC2t06534H' => 'bol', 'BolC3t14334H' => 'bol', 'BolC5t30451H' => 'bol', 'BolC7t45880H' => 'bol', 'BolC7t46586H' => 'bol', 'BolC8t49301H' => 'bol', 'BolC8t51837H' => 'bol', 'BolC9t56822H' => 'bol', 'BolC9t59235H' => 'bol', 'BraA01t00234Z' => 'bra', 'BraA01t01563Z' => 'bra', 'BraA02t05147Z' => 'bra', 'BraA03t10947Z' => 'bra', 'BraA03t14633Z' => 'bra', 'BraA08t35112Z' => 'bra', 'BraA09t41330Z' => 'bra', 'BraA10t44570Z' => 'bra', 'C01p02670' => 'bna', 'C01p20260' => 'bna', 'C02p05890' => 'bna', 'C03p19530' => 'bna', 'C05p17470' => 'bna', 'C07p53900' => 'bna', 'C07p61630' => 'bna', 'C08p16800' => 'bna', 'C08p42810' => 'bna', 'C09p39480' => 'bna', 'C09p63980' => 'bna', 'CAN.G1001.7' => 'can', 'CAN.G1034.55' => 'can', 'CAN.G143.7' => 'can', 'CAN.G3340.1' => 'can', 'CAN.G358.19' => 'can', 'CAN.G373.2' => 'can', 'CAN.G674.16' => 'can', 'CAN.G674.17' => 'can', 'CAN.G674.18' => 'can', 'CAN.G732.2' => 'can', 'CAN.G732.3' => 'can', 'CAN.G993.39' => 'can', 'CANSAT01G2052' => 'cansat', 'CANSAT80G0070' => 'cansat', 'CANSAT80G0483' => 'cansat', 'CANSAT80G0625' => 'cansat', 'CARHR019690' => 'chi', 'CARHR080280' => 'chi', 'CARHR152750' => 'chi', 'CARHR152760' => 'chi', 'CARHR152770' => 'chi', 'CARHR200340' => 'chi', 'CARHR232370' => 'chi', 'CARHR244670' => 'chi', 'CARHR244680' => 'chi', 'CARHR257520' => 'chi', 'Carub.0001s1872' => 'cru', 'Carub.0006s1130' => 'cru', 'Carub.0007s0396' => 'cru', 'Carub.0007s0397' => 'cru', 'Carub.0007s1608' => 'cru', 'Carub.0008s1068' => 'cru', 'Carub.0008s1077' => 'cru', 'Ca_16158_v3' => 'car', 'Ca_17571_v3' => 'car', 'Ca_21936_v3' => 'car', 'Ca_22350_v3' => 'car', 'CBR_g22445' => 'cbr', 'CBR_g26290' => 'cbr', 'Cc04_g09610' => 'ccan', 'Cc04_g12280' => 'ccan', 'Cc07_g10230' => 'ccan', 'CDE02G0093' => 'cde', 'CDE02G0701' => 'cde', 'CDE04G1050' => 'cde', 'CDE05G1833' => 'cde', 'CDE05G3058' => 'cde', 'CDE05G3380' => 'cde', 'CDE06G0536' => 'cde', 'Cfa006923' => 'cfa', 'Cfa009402' => 'cfa', 'Cfa018751' => 'cfa', 'Cfa019164' => 'cfa', 'Cfa022935' => 'cfa', 'Ciclev10019081m.g' => 'ccl', 'Ciclev10025076m.g' => 'ccl', 'Ciclev10030712m.g' => 'ccl', 'Ciclev10033760m.g' => 'ccl', 'CiPaw.05G105600' => 'cil', 'CiPaw.08G136700' => 'cil', 'CiPaw.11G003900' => 'cil', 'CiPaw.11G023700' => 'cil', 'CiPaw.12G003700' => 'cil', 'ClCG06G017100' => 'cla', 'ClCG06G018110' => 'cla', 'ClCG07G008800' => 'cla', 'ClCG07G015330' => 'cla', 'COL.COLO4_13698' => 'col', 'COL.COLO4_16659' => 'col', 'COL.COLO4_21986' => 'col', 'COL.COLO4_24049' => 'col', 'COL.COLO4_29061' => 'col', 'COL.COLO4_29075' => 'col', 'COL.COLO4_30094' => 'col', 'Cpa.g.c33689' => 'cpa', 'Cpa.g.sc108.39' => 'cpa', 'Cpa.g.sc108.41' => 'cpa', 'Cpa.g.sc1163.1' => 'cpa', 'Cpa.g.sc4.155' => 'cpa', 'Cpa.g.sc6.194' => 'cpa', 'CsaV3_1G000340' => 'csa', 'CsaV3_1G001400' => 'csa', 'CsaV3_4G002220' => 'csa', 'CsaV3_4G005370' => 'csa', 'CSS0007487' => 'camsi', 'CSS0008066' => 'camsi', 'CSS0009120' => 'camsi', 'CSS0015512' => 'camsi', 'CSS0022409' => 'camsi', 'CSS0025358' => 'camsi', 'CSS0044547' => 'camsi', 'DCAR_013057' => 'dca', 'DCAR_015058' => 'dca', 'DCAR_016027' => 'dca', 'DCAR_017327' => 'dca', 'DCAR_020743' => 'dca', 'DCAR_026157' => 'dca', 'DCAR_032339' => 'dca', 'DCAR_032340' => 'dca', 'Dinv11200' => 'din', 'Dinv11201' => 'din', 'Dinv20631' => 'din', 'Dinv23182' => 'din', 'Dinv33466' => 'din', 'Dinv33583' => 'din', 'Dinv38565' => 'din', 'Duzib068G0200' => 'dzi', 'Duzib147G0132' => 'dzi', 'Duzib147G0635' => 'dzi', 'Duzib205G1670' => 'dzi', 'Duzib251G0606' => 'dzi', 'ECA232G3336' => 'eca', 'ECA232G3763' => 'eca', 'ECA232G4845' => 'eca', 'ECA234G1607' => 'eca', 'ECA246G0932' => 'eca', 'ECA247G0781' => 'eca', 'ECA247G1932' => 'eca', 'ECA247G2079' => 'eca', 'ECA247G3338' => 'eca', 'ECA247G4115' => 'eca', 'EL10Ac3g06552' => 'bvu', 'EL10Ac5g10721' => 'bvu', 'EL10Ac5g10722' => 'bvu', 'EL10Ac5g10723' => 'bvu', 'EL10Ac5g11361' => 'bvu', 'EL10Ac6g13553' => 'bvu', 'EL10As8g23872' => 'bvu', 'Eucgr.B00250' => 'egr', 'Eucgr.B00251' => 'egr', 'Eucgr.B03533' => 'egr', 'Eucgr.I02381' => 'egr', 'Eucgr.K02700' => 'egr', 'FAN02G0174' => 'fan', 'FAN02G3146' => 'fan', 'FAN04G1672' => 'fan', 'FAN04G2273' => 'fan', 'FAN05G2791' => 'fan', 'FAN05G4035' => 'fan', 'FAN07G0834' => 'fan', 'FAN08G1198' => 'fan', 'FAN09G4182' => 'fan', 'FAN12G0496' => 'fan', 'FAN13G1027' => 'fan', 'FAN13G2951' => 'fan', 'FAN14G0705' => 'fan', 'FAN14G0720' => 'fan', 'FAN17G0201' => 'fan', 'FAN17G2665' => 'fan', 'FAN18G1456' => 'fan', 'FAN18G1525' => 'fan', 'FAN18G3500' => 'fan', 'FAN28G2670' => 'fan', 'FvH4_1g12391' => 'fve', 'FvH4_4g23220' => 'fve', 'FvH4_5g08810' => 'fve', 'FvH4_5g28960' => 'fve', 'FvH4_6g42820' => 'fve', 'FvH4_6g51110' => 'fve', 'Glyma.02G051802' => 'gma', 'Glyma.04G185300' => 'gma', 'Glyma.05G202900' => 'gma', 'Glyma.08G010300' => 'gma', 'Glyma.16G131900' => 'gma', 'Glyma.17G087900' => 'gma', 'Gohir.A07G048600' => 'ghi', 'Gohir.A11G179000' => 'ghi', 'Gohir.A12G140900' => 'ghi', 'Gohir.A12G140950' => 'ghi', 'Gohir.A12G191700' => 'ghi', 'Gohir.A13G086300' => 'ghi', 'Gohir.D07G052900' => 'ghi', 'Gohir.D11G186600' => 'ghi', 'Gohir.D12G145575' => 'ghi', 'Gohir.D12G145650' => 'ghi', 'Gohir.D12G145725' => 'ghi', 'Gohir.D12G194050' => 'ghi', 'Gohir.D13G091800' => 'ghi', 'Gorai.001G055900' => 'gra', 'Gorai.007G198400' => 'gra', 'Gorai.008G157000' => 'gra', 'Gorai.008G157100' => 'gra', 'Gorai.008G208700' => 'gra', 'Gorai.010G138700' => 'gra', 'GSVIVG01000977001' => 'vvi', 'GSVIVG01007708001' => 'vvi', 'GSVIVG01008587001' => 'vvi', 'GSVIVG01018849001' => 'vvi', 'GSVIVG01032432001' => 'vvi', 'HanXRQChr02g0034131' => 'han', 'HanXRQChr02g0035981' => 'han', 'HanXRQChr02g0035991' => 'han', 'HanXRQChr05g0155611' => 'han', 'HanXRQChr05g0155621' => 'han', 'HanXRQChr08g0236501' => 'han', 'HanXRQChr09g0261321' => 'han', 'HanXRQChr09g0272081' => 'han', 'HanXRQChr10g0310741' => 'han', 'HanXRQChr11g0325591' => 'han', 'HanXRQChr12g0385691' => 'han', 'HanXRQChr13g0387801' => 'han', 'HanXRQChr15g0463011' => 'han', 'Haze_03826' => 'cav', 'Haze_03827' => 'cav', 'Haze_07183' => 'cav', 'Haze_07537' => 'cav', 'Haze_07539' => 'cav', 'Haze_12461' => 'cav', 'Haze_16115' => 'cav', 'Haze_16808' => 'cav', 'Haze_18531' => 'cav', 'Hma1.2p1_0046F.1_g026700' => 'hma', 'Hma1.2p1_0046F.1_g026710' => 'hma', 'Hma1.2p1_0168F.1_g074340' => 'hma', 'Hma1.2p1_0266F.1_g107030' => 'hma', 'Hma1.2p1_0266F.1_g107060' => 'hma', 'Hma1.2p1_0275F.1_g110510' => 'hma', 'Hma1.2p1_0592F.1_g185490' => 'hma', 'Hma1.2p1_0592F.1_g185500' => 'hma', 'Hma1.2p1_0592F.1_g185510' => 'hma', 'Hma1.2p1_0592F.1_g185520' => 'hma', 'Hma1.2p1_0592F.1_g185530' => 'hma', 'Hma1.2p1_0818F.1_g223450' => 'hma', 'HPP92_009708' => 'vpl', 'HPP92_009793' => 'vpl', 'HPP92_009796' => 'vpl', 'HPP92_009797' => 'vpl', 'HPP92_014940' => 'vpl', 'HPP92_014988' => 'vpl', 'Hund02463' => 'sun', 'Hund02760' => 'sun', 'Hund05071' => 'sun', 'Hund10108' => 'sun', 'Hund11204' => 'sun', 'Hund14016' => 'sun', 'Hund16464' => 'sun', 'Lalb_Chr09g0333391' => 'lal', 'Lalb_Chr11g0070461' => 'lal', 'Lalb_Chr12g0201671' => 'lal', 'Lalb_Chr13g0297161' => 'lal', 'Lj1g0002823' => 'lja', 'Lj3C1074T6' => 'lonja', 'Lj4A212T28' => 'lonja', 'Lj4g0005516' => 'lja', 'Lj4g0013705' => 'lja', 'Lj4g0027865' => 'lja', 'Lj5C92G16' => 'lonja', 'Lj5C92T12' => 'lonja', 'Lj7C596T3' => 'lonja', 'Lj9A446G59' => 'lonja', 'Lj9A482G21' => 'lonja', 'Lsat_1_v5_gn_1_28261' => 'lsa', 'Lsat_1_v5_gn_1_28281' => 'lsa', 'Lsat_1_v5_gn_1_32721' => 'lsa', 'Lsat_1_v5_gn_4_151760' => 'lsa', 'Lsat_1_v5_gn_4_2120' => 'lsa', 'Lsat_1_v5_gn_4_75761' => 'lsa', 'Lsat_1_v5_gn_5_10920' => 'lsa', 'Manes.02G099900' => 'mes', 'Manes.11G096200' => 'mes', 'Manes.12G007200' => 'mes', 'Manes.14G048300' => 'mes', 'Manes.17G114700' => 'mes', 'Mapoly0002s0070' => 'mpo', 'Mapoly0029s0099' => 'mpo', 'MBI07_g24742_MAGBIO' => 'mbi', 'MBI10_g27988_MAGBIO' => 'mbi', 'MBI11_g13057_MAGBIO' => 'mbi', 'MD02G1137200' => 'mdo', 'MD06G1137200' => 'mdo', 'MD07G1122300' => 'mdo', 'MD09G1078200' => 'mdo', 'MD13G1123700' => 'mdo', 'MD14G1151900' => 'mdo', 'MD17G1030900' => 'mdo', 'MD17G1068200' => 'mdo', 'MD17G1068600' => 'mdo', 'Medtr3g077540' => 'mtr', 'Medtr4g105530' => 'mtr', 'Medtr8g076580' => 'mtr', 'Medtr8g076590' => 'mtr', 'Medtr8g096410' => 'mtr', 'MELO3C016411.2' => 'cme', 'MELO3C017780.2' => 'cme', 'MELO3C022560.2' => 'cme', 'MELO3C026187.2' => 'cme', 'MELO3C026286.2' => 'cme', 'MELO3C032854.2' => 'cme', 'Migut.H02495' => 'egut', 'Migut.I00561' => 'egut', 'Migut.K01015' => 'egut', 'Migut.K01016' => 'egut', 'Migut.L00743' => 'egut', 'Migut.L00744' => 'egut', 'Migut.L00746' => 'egut', 'Migut.L00798' => 'egut', 'Migut.L00799' => 'egut', 'Migut.N02096' => 'egut', 'MSTRG.11259' => 'ama', 'MSTRG.23142' => 'ama', 'MSTRG.2499' => 'ama', 'Nitab4.5_0000003g0730' => 'nta', 'Nitab4.5_0000137g0020' => 'nta', 'Nitab4.5_0000721g0210' => 'nta', 'Nitab4.5_0000723g0050' => 'nta', 'Nitab4.5_0000913g0070' => 'nta', 'Nitab4.5_0001332g0040' => 'nta', 'Nitab4.5_0001771g0050' => 'nta', 'Nitab4.5_0001918g0050' => 'nta', 'Nitab4.5_0002686g0030' => 'nta', 'Nitab4.5_0003156g0020' => 'nta', 'Nitab4.5_0003383g0040' => 'nta', 'Nitab4.5_0003918g0010' => 'nta', 'Nitab4.5_0006760g0010' => 'nta', 'Nn1g05981' => 'nnu', 'Nn1g06288' => 'nnu', 'Nn3g16371' => 'nnu', 'Nn3g16786' => 'nnu', 'Nn4g22232' => 'nnu', 'Oeu005144.1' => 'oeu', 'Oeu005145.1' => 'oeu', 'Oeu011348.1' => 'oeu', 'Oeu016415.1' => 'oeu', 'Oeu023501.1' => 'oeu', 'Oeu044473.1' => 'oeu', 'Oeu048892.2' => 'oeu', 'Os01g0549200' => 'osa', 'Os02g0469300' => 'osa', 'Os04g0311100' => 'osa', 'Os06g0474900' => 'osa', 'Os10g0181700' => 'osa', 'Os11g0454800' => 'osa', 'Peaxi162Scf00037g00714' => 'pax', 'Peaxi162Scf00084g01217' => 'pax', 'Peaxi162Scf00257g00217' => 'pax', 'Peaxi162Scf00516g00215' => 'pax', 'Peaxi162Scf00689g00123' => 'pax', 'PGR044G2719' => 'pgr', 'PGR083G1360' => 'pgr', 'PGR102G2849' => 'pgr', 'PGR119G2534' => 'pgr', 'PGSC0003DMG400003538' => 'stu', 'PGSC0003DMG400028138' => 'stu', 'PGSC0003DMG400031732' => 'stu', 'PGSC0003DMG400038165' => 'stu', 'Phvul.002G284600' => 'pvu', 'Phvul.003G258200' => 'pvu', 'Phvul.009G176500' => 'pvu', 'Potri.003G167201' => 'ptr', 'Potri.005G118400' => 'ptr', 'Potri.012G089000' => 'ptr', 'Potri.012G102800' => 'ptr', 'Potri.015G079400' => 'ptr', 'Potri.015G100900' => 'ptr', 'Pp3c14_9810' => 'ppa', 'Pp3c15_10450' => 'ppa', 'Pp3c20_19150' => 'ppa', 'Pp3c23_12740' => 'ppa', 'Pp3c23_6310' => 'ppa', 'Pp3c24_3720' => 'ppa', 'Pp3c27_2580' => 'ppa', 'Pp3c9_8990' => 'ppa', 'PRCOL_00002854' => 'pco', 'Prupe.1G221200' => 'ppe', 'Prupe.3G289000' => 'ppe', 'Prupe.5G147000' => 'ppe', 'Prupe.6G157300' => 'ppe', 'Prupe.7G163400' => 'ppe', 'Psat0s2177g0040' => 'psa', 'Psat3g174760' => 'psa', 'Psat3g192160' => 'psa', 'Psat4g058520' => 'psa', 'Psat4g096840' => 'psa', 'Psat7g037320' => 'psa', 'PSO017G1274' => 'pso', 'PSO017G5166' => 'pso', 'PSO063G4558' => 'pso', 'PSO170G4458' => 'pso', 'PSO170G5005' => 'pso', 'PSO210G6156' => 'pso', 'PSO210G6635' => 'pso', 'PSO210G7397' => 'pso', 'PSO210G7700' => 'pso', 'PSO455G0035' => 'pso', 'PSO455G0180' => 'pso', 'PSO478G4515' => 'pso', 'PSO832G1305' => 'pso', 'PSO832G3489' => 'pso', 'QL02p075247' => 'qlo', 'QL03p051148' => 'qlo', 'QL05p010313' => 'qlo', 'QL06p034627' => 'qlo', 'QL10p001889' => 'qlo', 'QL10p010846' => 'qlo', 'RcHm_v2.0_Chr1g0350621' => 'rch', 'RcHm_v2.0_Chr1g0350641' => 'rch', 'RcHm_v2.0_Chr2g0092891' => 'rch', 'RcHm_v2.0_Chr2g0100251' => 'rch', 'RcHm_v2.0_Chr2g0158661' => 'rch', 'RcHm_v2.0_Chr2g0172741' => 'rch', 'RcHm_v2.0_Chr4g0429571' => 'rch', 'RcHm_v2.0_Chr5g0042471' => 'rch', 'RcHm_v2.0_Chr7g0189451' => 'rch', 'Rhsim08G0052000' => 'rsi', 'Rhsim08G0174400' => 'rsi', 'Rhsim08G0193200' => 'rsi', 'Rhsim10G0214800' => 'rsi', 'Rhsim10G0214900' => 'rsi', 'Rhsim10G0215000' => 'rsi', 'Rhsim12G0022900' => 'rsi', 'Rhsim12G0177500' => 'rsi', 'Rhsim12G0177700' => 'rsi', 'Sabra03G0122600' => 'sbr', 'Sabra05G0097400' => 'sbr', 'Sabra12G0064100' => 'sbr', 'Sabra15G0121300' => 'sbr', 'SalBow2G0642' => 'sbo', 'SalBow5G2667' => 'sbo', 'SalBow5G4873' => 'sbo', 'SalBow8G2395' => 'sbo', 'Sc03g0003290' => 'sci', 'Sc10g0010130' => 'sci', 'Sc22g0003650' => 'sci', 'Sed0001603' => 'sed', 'Sed0004259' => 'sed', 'Sed0006789' => 'sed', 'Sed0011838' => 'sed', 'Sed0012964' => 'sed', 'Sed0016383' => 'sed', 'Sed0019010' => 'sed', 'Sed0020188' => 'sed', 'SEGI_04702' => 'sgi', 'SEGI_17231' => 'sgi', 'SEGI_18877' => 'sgi', 'SEGI_25196' => 'sgi', 'SEGI_25515' => 'sgi', 'SEGI_28445' => 'sgi', 'SEGI_37452' => 'sgi', 'SGA_v2.0_scaffold188G40336' => 'sas', 'SGA_v2.0_scaffold228G43247' => 'sas', 'SGA_v2.0_scaffold280G46853' => 'sas', 'SGA_v2.0_scaffold34G13808' => 'sas', 'SGA_v2.0_scaffold40G15576' => 'sas', 'SGA_v2.0_scaffold611G53188' => 'sas', 'SGA_v2.0_scaffold78G25461' => 'sas', 'SGA_v2.0_scaffold90G27888' => 'sas', 'SHI08601' => 'shi', 'SHI08606' => 'shi', 'SHI17117' => 'shi', 'SHI17119' => 'shi', 'SMO118G0201' => 'smo', 'SMO169G0247' => 'smo', 'SMO176G0006' => 'smo', 'SMO176G0015' => 'smo', 'SMO202G0006' => 'smo', 'SMO240G0050' => 'smo', 'SMO286G0009' => 'smo', 'SMO338G0033' => 'smo', 'SMO356G0533' => 'smo', 'SMO364G0382' => 'smo', 'SMO367G0166' => 'smo', 'SMO367G1098' => 'smo', 'Solyc01g009920.3' => 'sly', 'Solyc01g099300.3' => 'sly', 'Solyc02g084700.3' => 'sly', 'Solyc03g097520.3' => 'sly', 'Solyc06g071580.3' => 'sly', 'Solyc10g081760.3' => 'sly', 'Sopen01g005480' => 'spe', 'Sopen01g042850' => 'spe', 'Sopen02g029370' => 'spe', 'Sopen03g028280' => 'spe', 'Sopen06g027870' => 'spe', 'Sopen10g032270' => 'spe', 'Sp5g18180' => 'spa', 'Sp6g12880' => 'spa', 'Sp6g30850' => 'spa', 'Sp7g22960' => 'spa', 'Sp7g34010' => 'spa', 'SpUn1326_0010' => 'spa', 'TAR371G0242' => 'tar', 'TAR622G0638' => 'tar', 'TAR628G1548' => 'tar', 'TAR629G1079' => 'tar', 'TAR629G3413' => 'tar', 'THA.LOC104804249' => 'tha', 'THA.LOC104808315' => 'tha', 'THA.LOC104809238' => 'tha', 'THA.LOC104825484' => 'tha', 'Thecc.01G025500' => 'tca', 'Thecc.03G015800' => 'tca', 'Thecc.03G018000' => 'tca', 'Thecc.03G134800' => 'tca', 'Thecc.04G014700' => 'tca', 'Thhalv10006991m.g' => 'esa', 'Thhalv10012707m.g' => 'esa', 'Thhalv10015739m.g' => 'esa', 'Thhalv10024553m.g' => 'esa', 'Thhalv10024673m.g' => 'esa', 'Thhalv10029187m.g' => 'esa', 'TPR.G12971' => 'tpr', 'TPR.G29396' => 'tpr', 'TPR.G33376' => 'tpr', 'TPR.G35508' => 'tpr', 'TPR.G35516' => 'tpr', 'TPR.G37317' => 'tpr', 'TPR.G37389' => 'tpr', 'TPR.G37523' => 'tpr', 'TPR.G559' => 'tpr', 'TWI14G0070' => 'twi', 'TWI14G0729' => 'twi', 'TWI18G0596' => 'twi', 'TWI39G0780' => 'twi', 'TWI39G0850' => 'twi', 'TWI73G1052' => 'twi', 'unitig_52.g17485' => 'ugi', 'unitig_61.g26355' => 'ugi', 'vmacro01040' => 'vma', 'vmacro16731' => 'vma', 'vmacro18270' => 'vma', 'vmacro19142' => 'vma', 'vmacro19407' => 'vma', 'vmacro19408' => 'vma', 'vmacro21899' => 'vma', 'vmacro21900' => 'vma', 'vmacro21901' => 'vma', 'VMungo0251G0490' => 'vmu', 'VMungo0251G1748' => 'vmu', 'VMungo1309G0421' => 'vmu', 'Zm00001eb086500' => 'zma', 'Zm00001eb150680' => 'zma', 'Zm00001eb162330' => 'zma', 'Zm00001eb203130' => 'zma', 'Zm00001eb369480' => 'zma', 'Zm00001eb382340' => 'zma', 'Zm00001eb416360' => 'zma' ), 'gf_id' => 'HOM05D000902', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000902' ), 'data_identifier' => 'HOM05D000902', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000902', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '663', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02470' => 'bna', 'A01p16260' => 'bna', 'A02p01680' => 'bna', 'A03p16600' => 'bna', 'A03p55660' => 'bna', 'A03p64160' => 'bna', 'A03p64170' => 'bna', 'A08p31900' => 'bna', 'A09p59530' => 'bna', 'A10p08230' => 'bna', 'A10p25090' => 'bna', 'Aa31LG3G7100' => 'aar', 'Aa31LG3G7110' => 'aar', 'Aa31LG6G13160' => 'aar', 'Aa31LG7G10770' => 'aar', 'Aa31LG7G3830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2723' => 'aag', 'Actinidia08045' => 'ach', 'Actinidia08888' => 'ach', 'Actinidia18333' => 'ach', 'Actinidia19334' => 'ach', 'Actinidia25552' => 'ach', 'Actinidia26089' => 'ach', 'Actinidia30615' => 'ach', 'Actinidia30616' => 'ach', 'Actinidia33083' => 'ach', 'Actinidia35762' => 'ach', 'Ah.02g110620' => 'amhyb', 'Ah.11g046390' => 'amhyb', 'AL1G31670' => 'aly', 'AL6G23730' => 'aly', 'AL7G14740' => 'aly', 'AL7G14750' => 'aly', 'AL7G14760' => 'aly', 'AL7G28220' => 'aly', 'AL8G24940' => 'aly', 'Aqoxy3G01665' => 'aox', 'Aqoxy3G02853' => 'aox', 'Aqoxy5G01513' => 'aox', 'Aqoxy5G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8SKA4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ75LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKDA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0LJZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7REX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZP4YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWX7I5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2QKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS0L9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPCD8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q161UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC7XCF' => 'arhy', 'AT1G19100' => 'ath', 'AT4G24970' => 'ath', 'AT4G36270' => 'ath', 'AT4G36280' => 'ath', 'AT4G36290' => 'ath', 'AT5G13130' => 'ath', 'AT5G50780' => 'ath', 'ATR0582G266' => 'atr', 'ATR0661G195' => 'atr', 'ATR1152G031' => 'atr', 'Atru.chr11.2382' => 'acertr', 'Atru.chr12.2337' => 'acertr', 'Atru.chr3.744' => 'acertr', 'Atru.chr6.1870' => 'acertr', 'Atru.chr9.2515' => 'acertr', 'AUR62004120' => 'cqu', 'AUR62005667' => 'cqu', 'AUR62007634' => 'cqu', 'AUR62008186' => 'cqu', 'AUR62008187' => 'cqu', 'AUR62008188' => 'cqu', 'AUR62027954' => 'cqu', 'AUR62028766' => 'cqu', 'AUR62028767' => 'cqu', 'AUR62028768' => 'cqu', 'AUR62028886' => 'cqu', 'AUR62029563' => 'cqu', 'AUR62038832' => 'cqu', 'BcaB01g04149' => 'bca', 'BcaB03g12940' => 'bca', 'BcaB03g13090' => 'bca', 'BcaB03g14466' => 'bca', 'BcaB05g24035' => 'bca', 'BcaC01g06050' => 'bca', 'BcaC04g19148' => 'bca', 'BcaC04g20761' => 'bca', 'BcaC06g32845' => 'bca', 'BcaC07g41274' => 'bca', 'BcaC09g50827' => 'bca', 'BcaNung00741' => 'bca', 'BcaNung00742' => 'bca', 'BcaNung01859' => 'bca', 'BcaNung03985' => 'bca', 'BcaNung03989' => 'bca', 'BcaNung05661' => 'bca', 'BolC1t00257H' => 'bol', 'BolC1t01956H' => 'bol', 'BolC2t06534H' => 'bol', 'BolC3t14334H' => 'bol', 'BolC5t30451H' => 'bol', 'BolC7t45880H' => 'bol', 'BolC7t46586H' => 'bol', 'BolC8t49301H' => 'bol', 'BolC8t51837H' => 'bol', 'BolC9t56822H' => 'bol', 'BolC9t59235H' => 'bol', 'BraA01t00234Z' => 'bra', 'BraA01t01563Z' => 'bra', 'BraA02t05147Z' => 'bra', 'BraA03t10947Z' => 'bra', 'BraA03t14633Z' => 'bra', 'BraA08t35112Z' => 'bra', 'BraA09t41330Z' => 'bra', 'BraA10t44570Z' => 'bra', 'C01p02670' => 'bna', 'C01p20260' => 'bna', 'C02p05890' => 'bna', 'C03p19530' => 'bna', 'C05p17470' => 'bna', 'C07p53900' => 'bna', 'C07p61630' => 'bna', 'C08p16800' => 'bna', 'C08p42810' => 'bna', 'C09p39480' => 'bna', 'C09p63980' => 'bna', 'CAN.G1001.7' => 'can', 'CAN.G1034.55' => 'can', 'CAN.G143.7' => 'can', 'CAN.G3340.1' => 'can', 'CAN.G358.19' => 'can', 'CAN.G373.2' => 'can', 'CAN.G674.16' => 'can', 'CAN.G674.17' => 'can', 'CAN.G674.18' => 'can', 'CAN.G732.2' => 'can', 'CAN.G732.3' => 'can', 'CAN.G993.39' => 'can', 'CANSAT01G2052' => 'cansat', 'CANSAT80G0070' => 'cansat', 'CANSAT80G0483' => 'cansat', 'CANSAT80G0625' => 'cansat', 'CARHR019690' => 'chi', 'CARHR080280' => 'chi', 'CARHR152750' => 'chi', 'CARHR152760' => 'chi', 'CARHR152770' => 'chi', 'CARHR200340' => 'chi', 'CARHR232370' => 'chi', 'CARHR244670' => 'chi', 'CARHR244680' => 'chi', 'CARHR257520' => 'chi', 'Carub.0001s1872' => 'cru', 'Carub.0006s1130' => 'cru', 'Carub.0007s0396' => 'cru', 'Carub.0007s0397' => 'cru', 'Carub.0007s1608' => 'cru', 'Carub.0008s1068' => 'cru', 'Carub.0008s1077' => 'cru', 'Ca_16158_v3' => 'car', 'Ca_17571_v3' => 'car', 'Ca_21936_v3' => 'car', 'Ca_22350_v3' => 'car', 'CBR_g22445' => 'cbr', 'CBR_g26290' => 'cbr', 'Cc04_g09610' => 'ccan', 'Cc04_g12280' => 'ccan', 'Cc07_g10230' => 'ccan', 'CDE02G0093' => 'cde', 'CDE02G0701' => 'cde', 'CDE04G1050' => 'cde', 'CDE05G1833' => 'cde', 'CDE05G3058' => 'cde', 'CDE05G3380' => 'cde', 'CDE06G0536' => 'cde', 'Cfa006923' => 'cfa', 'Cfa009402' => 'cfa', 'Cfa018751' => 'cfa', 'Cfa019164' => 'cfa', 'Cfa022935' => 'cfa', 'Ciclev10019081m.g' => 'ccl', 'Ciclev10025076m.g' => 'ccl', 'Ciclev10030712m.g' => 'ccl', 'Ciclev10033760m.g' => 'ccl', 'CiPaw.05G105600' => 'cil', 'CiPaw.08G136700' => 'cil', 'CiPaw.11G003900' => 'cil', 'CiPaw.11G023700' => 'cil', 'CiPaw.12G003700' => 'cil', 'ClCG06G017100' => 'cla', 'ClCG06G018110' => 'cla', 'ClCG07G008800' => 'cla', 'ClCG07G015330' => 'cla', 'COL.COLO4_13698' => 'col', 'COL.COLO4_16659' => 'col', 'COL.COLO4_21986' => 'col', 'COL.COLO4_24049' => 'col', 'COL.COLO4_29061' => 'col', 'COL.COLO4_29075' => 'col', 'COL.COLO4_30094' => 'col', 'Cpa.g.c33689' => 'cpa', 'Cpa.g.sc108.39' => 'cpa', 'Cpa.g.sc108.41' => 'cpa', 'Cpa.g.sc1163.1' => 'cpa', 'Cpa.g.sc4.155' => 'cpa', 'Cpa.g.sc6.194' => 'cpa', 'CsaV3_1G000340' => 'csa', 'CsaV3_1G001400' => 'csa', 'CsaV3_4G002220' => 'csa', 'CsaV3_4G005370' => 'csa', 'CSS0007487' => 'camsi', 'CSS0008066' => 'camsi', 'CSS0009120' => 'camsi', 'CSS0015512' => 'camsi', 'CSS0022409' => 'camsi', 'CSS0025358' => 'camsi', 'CSS0044547' => 'camsi', 'DCAR_013057' => 'dca', 'DCAR_015058' => 'dca', 'DCAR_016027' => 'dca', 'DCAR_017327' => 'dca', 'DCAR_020743' => 'dca', 'DCAR_026157' => 'dca', 'DCAR_032339' => 'dca', 'DCAR_032340' => 'dca', 'Dinv11200' => 'din', 'Dinv11201' => 'din', 'Dinv20631' => 'din', 'Dinv23182' => 'din', 'Dinv33466' => 'din', 'Dinv33583' => 'din', 'Dinv38565' => 'din', 'Duzib068G0200' => 'dzi', 'Duzib147G0132' => 'dzi', 'Duzib147G0635' => 'dzi', 'Duzib205G1670' => 'dzi', 'Duzib251G0606' => 'dzi', 'ECA232G3336' => 'eca', 'ECA232G3763' => 'eca', 'ECA232G4845' => 'eca', 'ECA234G1607' => 'eca', 'ECA246G0932' => 'eca', 'ECA247G0781' => 'eca', 'ECA247G1932' => 'eca', 'ECA247G2079' => 'eca', 'ECA247G3338' => 'eca', 'ECA247G4115' => 'eca', 'EL10Ac3g06552' => 'bvu', 'EL10Ac5g10721' => 'bvu', 'EL10Ac5g10722' => 'bvu', 'EL10Ac5g10723' => 'bvu', 'EL10Ac5g11361' => 'bvu', 'EL10Ac6g13553' => 'bvu', 'EL10As8g23872' => 'bvu', 'Eucgr.B00250' => 'egr', 'Eucgr.B00251' => 'egr', 'Eucgr.B03533' => 'egr', 'Eucgr.I02381' => 'egr', 'Eucgr.K02700' => 'egr', 'FAN02G0174' => 'fan', 'FAN02G3146' => 'fan', 'FAN04G1672' => 'fan', 'FAN04G2273' => 'fan', 'FAN05G2791' => 'fan', 'FAN05G4035' => 'fan', 'FAN07G0834' => 'fan', 'FAN08G1198' => 'fan', 'FAN09G4182' => 'fan', 'FAN12G0496' => 'fan', 'FAN13G1027' => 'fan', 'FAN13G2951' => 'fan', 'FAN14G0705' => 'fan', 'FAN14G0720' => 'fan', 'FAN17G0201' => 'fan', 'FAN17G2665' => 'fan', 'FAN18G1456' => 'fan', 'FAN18G1525' => 'fan', 'FAN18G3500' => 'fan', 'FAN28G2670' => 'fan', 'FvH4_1g12391' => 'fve', 'FvH4_4g23220' => 'fve', 'FvH4_5g08810' => 'fve', 'FvH4_5g28960' => 'fve', 'FvH4_6g42820' => 'fve', 'FvH4_6g51110' => 'fve', 'Glyma.02G051802' => 'gma', 'Glyma.04G185300' => 'gma', 'Glyma.05G202900' => 'gma', 'Glyma.08G010300' => 'gma', 'Glyma.16G131900' => 'gma', 'Glyma.17G087900' => 'gma', 'Gohir.A07G048600' => 'ghi', 'Gohir.A11G179000' => 'ghi', 'Gohir.A12G140900' => 'ghi', 'Gohir.A12G140950' => 'ghi', 'Gohir.A12G191700' => 'ghi', 'Gohir.A13G086300' => 'ghi', 'Gohir.D07G052900' => 'ghi', 'Gohir.D11G186600' => 'ghi', 'Gohir.D12G145575' => 'ghi', 'Gohir.D12G145650' => 'ghi', 'Gohir.D12G145725' => 'ghi', 'Gohir.D12G194050' => 'ghi', 'Gohir.D13G091800' => 'ghi', 'Gorai.001G055900' => 'gra', 'Gorai.007G198400' => 'gra', 'Gorai.008G157000' => 'gra', 'Gorai.008G157100' => 'gra', 'Gorai.008G208700' => 'gra', 'Gorai.010G138700' => 'gra', 'GSVIVG01000977001' => 'vvi', 'GSVIVG01007708001' => 'vvi', 'GSVIVG01008587001' => 'vvi', 'GSVIVG01018849001' => 'vvi', 'GSVIVG01032432001' => 'vvi', 'HanXRQChr02g0034131' => 'han', 'HanXRQChr02g0035981' => 'han', 'HanXRQChr02g0035991' => 'han', 'HanXRQChr05g0155611' => 'han', 'HanXRQChr05g0155621' => 'han', 'HanXRQChr08g0236501' => 'han', 'HanXRQChr09g0261321' => 'han', 'HanXRQChr09g0272081' => 'han', 'HanXRQChr10g0310741' => 'han', 'HanXRQChr11g0325591' => 'han', 'HanXRQChr12g0385691' => 'han', 'HanXRQChr13g0387801' => 'han', 'HanXRQChr15g0463011' => 'han', 'Haze_03826' => 'cav', 'Haze_03827' => 'cav', 'Haze_07183' => 'cav', 'Haze_07537' => 'cav', 'Haze_07539' => 'cav', 'Haze_12461' => 'cav', 'Haze_16115' => 'cav', 'Haze_16808' => 'cav', 'Haze_18531' => 'cav', 'Hma1.2p1_0046F.1_g026700' => 'hma', 'Hma1.2p1_0046F.1_g026710' => 'hma', 'Hma1.2p1_0168F.1_g074340' => 'hma', 'Hma1.2p1_0266F.1_g107030' => 'hma', 'Hma1.2p1_0266F.1_g107060' => 'hma', 'Hma1.2p1_0275F.1_g110510' => 'hma', 'Hma1.2p1_0592F.1_g185490' => 'hma', 'Hma1.2p1_0592F.1_g185500' => 'hma', 'Hma1.2p1_0592F.1_g185510' => 'hma', 'Hma1.2p1_0592F.1_g185520' => 'hma', 'Hma1.2p1_0592F.1_g185530' => 'hma', 'Hma1.2p1_0818F.1_g223450' => 'hma', 'HPP92_009708' => 'vpl', 'HPP92_009793' => 'vpl', 'HPP92_009796' => 'vpl', 'HPP92_009797' => 'vpl', 'HPP92_014940' => 'vpl', 'HPP92_014988' => 'vpl', 'Hund02463' => 'sun', 'Hund02760' => 'sun', 'Hund05071' => 'sun', 'Hund10108' => 'sun', 'Hund11204' => 'sun', 'Hund14016' => 'sun', 'Hund16464' => 'sun', 'Lalb_Chr09g0333391' => 'lal', 'Lalb_Chr11g0070461' => 'lal', 'Lalb_Chr12g0201671' => 'lal', 'Lalb_Chr13g0297161' => 'lal', 'Lj1g0002823' => 'lja', 'Lj3C1074T6' => 'lonja', 'Lj4A212T28' => 'lonja', 'Lj4g0005516' => 'lja', 'Lj4g0013705' => 'lja', 'Lj4g0027865' => 'lja', 'Lj5C92G16' => 'lonja', 'Lj5C92T12' => 'lonja', 'Lj7C596T3' => 'lonja', 'Lj9A446G59' => 'lonja', 'Lj9A482G21' => 'lonja', 'Lsat_1_v5_gn_1_28261' => 'lsa', 'Lsat_1_v5_gn_1_28281' => 'lsa', 'Lsat_1_v5_gn_1_32721' => 'lsa', 'Lsat_1_v5_gn_4_151760' => 'lsa', 'Lsat_1_v5_gn_4_2120' => 'lsa', 'Lsat_1_v5_gn_4_75761' => 'lsa', 'Lsat_1_v5_gn_5_10920' => 'lsa', 'Manes.02G099900' => 'mes', 'Manes.11G096200' => 'mes', 'Manes.12G007200' => 'mes', 'Manes.14G048300' => 'mes', 'Manes.17G114700' => 'mes', 'Mapoly0002s0070' => 'mpo', 'Mapoly0029s0099' => 'mpo', 'MBI07_g24742_MAGBIO' => 'mbi', 'MBI10_g27988_MAGBIO' => 'mbi', 'MBI11_g13057_MAGBIO' => 'mbi', 'MD02G1137200' => 'mdo', 'MD06G1137200' => 'mdo', 'MD07G1122300' => 'mdo', 'MD09G1078200' => 'mdo', 'MD13G1123700' => 'mdo', 'MD14G1151900' => 'mdo', 'MD17G1030900' => 'mdo', 'MD17G1068200' => 'mdo', 'MD17G1068600' => 'mdo', 'Medtr3g077540' => 'mtr', 'Medtr4g105530' => 'mtr', 'Medtr8g076580' => 'mtr', 'Medtr8g076590' => 'mtr', 'Medtr8g096410' => 'mtr', 'MELO3C016411.2' => 'cme', 'MELO3C017780.2' => 'cme', 'MELO3C022560.2' => 'cme', 'MELO3C026187.2' => 'cme', 'MELO3C026286.2' => 'cme', 'MELO3C032854.2' => 'cme', 'Migut.H02495' => 'egut', 'Migut.I00561' => 'egut', 'Migut.K01015' => 'egut', 'Migut.K01016' => 'egut', 'Migut.L00743' => 'egut', 'Migut.L00744' => 'egut', 'Migut.L00746' => 'egut', 'Migut.L00798' => 'egut', 'Migut.L00799' => 'egut', 'Migut.N02096' => 'egut', 'MSTRG.11259' => 'ama', 'MSTRG.23142' => 'ama', 'MSTRG.2499' => 'ama', 'Nitab4.5_0000003g0730' => 'nta', 'Nitab4.5_0000137g0020' => 'nta', 'Nitab4.5_0000721g0210' => 'nta', 'Nitab4.5_0000723g0050' => 'nta', 'Nitab4.5_0000913g0070' => 'nta', 'Nitab4.5_0001332g0040' => 'nta', 'Nitab4.5_0001771g0050' => 'nta', 'Nitab4.5_0001918g0050' => 'nta', 'Nitab4.5_0002686g0030' => 'nta', 'Nitab4.5_0003156g0020' => 'nta', 'Nitab4.5_0003383g0040' => 'nta', 'Nitab4.5_0003918g0010' => 'nta', 'Nitab4.5_0006760g0010' => 'nta', 'Nn1g05981' => 'nnu', 'Nn1g06288' => 'nnu', 'Nn3g16371' => 'nnu', 'Nn3g16786' => 'nnu', 'Nn4g22232' => 'nnu', 'Oeu005144.1' => 'oeu', 'Oeu005145.1' => 'oeu', 'Oeu011348.1' => 'oeu', 'Oeu016415.1' => 'oeu', 'Oeu023501.1' => 'oeu', 'Oeu044473.1' => 'oeu', 'Oeu048892.2' => 'oeu', 'Os01g0549200' => 'osa', 'Os02g0469300' => 'osa', 'Os04g0311100' => 'osa', 'Os06g0474900' => 'osa', 'Os10g0181700' => 'osa', 'Os11g0454800' => 'osa', 'Peaxi162Scf00037g00714' => 'pax', 'Peaxi162Scf00084g01217' => 'pax', 'Peaxi162Scf00257g00217' => 'pax', 'Peaxi162Scf00516g00215' => 'pax', 'Peaxi162Scf00689g00123' => 'pax', 'PGR044G2719' => 'pgr', 'PGR083G1360' => 'pgr', 'PGR102G2849' => 'pgr', 'PGR119G2534' => 'pgr', 'PGSC0003DMG400003538' => 'stu', 'PGSC0003DMG400028138' => 'stu', 'PGSC0003DMG400031732' => 'stu', 'PGSC0003DMG400038165' => 'stu', 'Phvul.002G284600' => 'pvu', 'Phvul.003G258200' => 'pvu', 'Phvul.009G176500' => 'pvu', 'Potri.003G167201' => 'ptr', 'Potri.005G118400' => 'ptr', 'Potri.012G089000' => 'ptr', 'Potri.012G102800' => 'ptr', 'Potri.015G079400' => 'ptr', 'Potri.015G100900' => 'ptr', 'Pp3c14_9810' => 'ppa', 'Pp3c15_10450' => 'ppa', 'Pp3c20_19150' => 'ppa', 'Pp3c23_12740' => 'ppa', 'Pp3c23_6310' => 'ppa', 'Pp3c24_3720' => 'ppa', 'Pp3c27_2580' => 'ppa', 'Pp3c9_8990' => 'ppa', 'PRCOL_00002854' => 'pco', 'Prupe.1G221200' => 'ppe', 'Prupe.3G289000' => 'ppe', 'Prupe.5G147000' => 'ppe', 'Prupe.6G157300' => 'ppe', 'Prupe.7G163400' => 'ppe', 'Psat0s2177g0040' => 'psa', 'Psat3g174760' => 'psa', 'Psat3g192160' => 'psa', 'Psat4g058520' => 'psa', 'Psat4g096840' => 'psa', 'Psat7g037320' => 'psa', 'PSO017G1274' => 'pso', 'PSO017G5166' => 'pso', 'PSO063G4558' => 'pso', 'PSO170G4458' => 'pso', 'PSO170G5005' => 'pso', 'PSO210G6156' => 'pso', 'PSO210G6635' => 'pso', 'PSO210G7397' => 'pso', 'PSO210G7700' => 'pso', 'PSO455G0035' => 'pso', 'PSO455G0180' => 'pso', 'PSO478G4515' => 'pso', 'PSO832G1305' => 'pso', 'PSO832G3489' => 'pso', 'QL02p075247' => 'qlo', 'QL03p051148' => 'qlo', 'QL05p010313' => 'qlo', 'QL06p034627' => 'qlo', 'QL10p001889' => 'qlo', 'QL10p010846' => 'qlo', 'RcHm_v2.0_Chr1g0350621' => 'rch', 'RcHm_v2.0_Chr1g0350641' => 'rch', 'RcHm_v2.0_Chr2g0092891' => 'rch', 'RcHm_v2.0_Chr2g0100251' => 'rch', 'RcHm_v2.0_Chr2g0158661' => 'rch', 'RcHm_v2.0_Chr2g0172741' => 'rch', 'RcHm_v2.0_Chr4g0429571' => 'rch', 'RcHm_v2.0_Chr5g0042471' => 'rch', 'RcHm_v2.0_Chr7g0189451' => 'rch', 'Rhsim08G0052000' => 'rsi', 'Rhsim08G0174400' => 'rsi', 'Rhsim08G0193200' => 'rsi', 'Rhsim10G0214800' => 'rsi', 'Rhsim10G0214900' => 'rsi', 'Rhsim10G0215000' => 'rsi', 'Rhsim12G0022900' => 'rsi', 'Rhsim12G0177500' => 'rsi', 'Rhsim12G0177700' => 'rsi', 'Sabra03G0122600' => 'sbr', 'Sabra05G0097400' => 'sbr', 'Sabra12G0064100' => 'sbr', 'Sabra15G0121300' => 'sbr', 'SalBow2G0642' => 'sbo', 'SalBow5G2667' => 'sbo', 'SalBow5G4873' => 'sbo', 'SalBow8G2395' => 'sbo', 'Sc03g0003290' => 'sci', 'Sc10g0010130' => 'sci', 'Sc22g0003650' => 'sci', 'Sed0001603' => 'sed', 'Sed0004259' => 'sed', 'Sed0006789' => 'sed', 'Sed0011838' => 'sed', 'Sed0012964' => 'sed', 'Sed0016383' => 'sed', 'Sed0019010' => 'sed', 'Sed0020188' => 'sed', 'SEGI_04702' => 'sgi', 'SEGI_17231' => 'sgi', 'SEGI_18877' => 'sgi', 'SEGI_25196' => 'sgi', 'SEGI_25515' => 'sgi', 'SEGI_28445' => 'sgi', 'SEGI_37452' => 'sgi', 'SGA_v2.0_scaffold188G40336' => 'sas', 'SGA_v2.0_scaffold228G43247' => 'sas', 'SGA_v2.0_scaffold280G46853' => 'sas', 'SGA_v2.0_scaffold34G13808' => 'sas', 'SGA_v2.0_scaffold40G15576' => 'sas', 'SGA_v2.0_scaffold611G53188' => 'sas', 'SGA_v2.0_scaffold78G25461' => 'sas', 'SGA_v2.0_scaffold90G27888' => 'sas', 'SHI08601' => 'shi', 'SHI08606' => 'shi', 'SHI17117' => 'shi', 'SHI17119' => 'shi', 'SMO118G0201' => 'smo', 'SMO169G0247' => 'smo', 'SMO176G0006' => 'smo', 'SMO176G0015' => 'smo', 'SMO202G0006' => 'smo', 'SMO240G0050' => 'smo', 'SMO286G0009' => 'smo', 'SMO338G0033' => 'smo', 'SMO356G0533' => 'smo', 'SMO364G0382' => 'smo', 'SMO367G0166' => 'smo', 'SMO367G1098' => 'smo', 'Solyc01g009920.3' => 'sly', 'Solyc01g099300.3' => 'sly', 'Solyc02g084700.3' => 'sly', 'Solyc03g097520.3' => 'sly', 'Solyc06g071580.3' => 'sly', 'Solyc10g081760.3' => 'sly', 'Sopen01g005480' => 'spe', 'Sopen01g042850' => 'spe', 'Sopen02g029370' => 'spe', 'Sopen03g028280' => 'spe', 'Sopen06g027870' => 'spe', 'Sopen10g032270' => 'spe', 'Sp5g18180' => 'spa', 'Sp6g12880' => 'spa', 'Sp6g30850' => 'spa', 'Sp7g22960' => 'spa', 'Sp7g34010' => 'spa', 'SpUn1326_0010' => 'spa', 'TAR371G0242' => 'tar', 'TAR622G0638' => 'tar', 'TAR628G1548' => 'tar', 'TAR629G1079' => 'tar', 'TAR629G3413' => 'tar', 'THA.LOC104804249' => 'tha', 'THA.LOC104808315' => 'tha', 'THA.LOC104809238' => 'tha', 'THA.LOC104825484' => 'tha', 'Thecc.01G025500' => 'tca', 'Thecc.03G015800' => 'tca', 'Thecc.03G018000' => 'tca', 'Thecc.03G134800' => 'tca', 'Thecc.04G014700' => 'tca', 'Thhalv10006991m.g' => 'esa', 'Thhalv10012707m.g' => 'esa', 'Thhalv10015739m.g' => 'esa', 'Thhalv10024553m.g' => 'esa', 'Thhalv10024673m.g' => 'esa', 'Thhalv10029187m.g' => 'esa', 'TPR.G12971' => 'tpr', 'TPR.G29396' => 'tpr', 'TPR.G33376' => 'tpr', 'TPR.G35508' => 'tpr', 'TPR.G35516' => 'tpr', 'TPR.G37317' => 'tpr', 'TPR.G37389' => 'tpr', 'TPR.G37523' => 'tpr', 'TPR.G559' => 'tpr', 'TWI14G0070' => 'twi', 'TWI14G0729' => 'twi', 'TWI18G0596' => 'twi', 'TWI39G0780' => 'twi', 'TWI39G0850' => 'twi', 'TWI73G1052' => 'twi', 'unitig_52.g17485' => 'ugi', 'unitig_61.g26355' => 'ugi', 'vmacro01040' => 'vma', 'vmacro16731' => 'vma', 'vmacro18270' => 'vma', 'vmacro19142' => 'vma', 'vmacro19407' => 'vma', 'vmacro19408' => 'vma', 'vmacro21899' => 'vma', 'vmacro21900' => 'vma', 'vmacro21901' => 'vma', 'VMungo0251G0490' => 'vmu', 'VMungo0251G1748' => 'vmu', 'VMungo1309G0421' => 'vmu', 'Zm00001eb086500' => 'zma', 'Zm00001eb150680' => 'zma', 'Zm00001eb162330' => 'zma', 'Zm00001eb203130' => 'zma', 'Zm00001eb369480' => 'zma', 'Zm00001eb382340' => 'zma', 'Zm00001eb416360' => 'zma' ) $gf_id = 'HOM05D000902' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000902' ) $data_identifier = 'HOM05D000902' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 13, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 10, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 6, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 9, 'hma' => (int) 12, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 4, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 6, 'ppa' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 6, 'rch' => (int) 9, 'rsi' => (int) 9, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 12, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 3, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416360' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000902', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '663', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02470' => 'bna', 'A01p16260' => 'bna', 'A02p01680' => 'bna', 'A03p16600' => 'bna', 'A03p55660' => 'bna', 'A03p64160' => 'bna', 'A03p64170' => 'bna', 'A08p31900' => 'bna', 'A09p59530' => 'bna', 'A10p08230' => 'bna', 'A10p25090' => 'bna', 'Aa31LG3G7100' => 'aar', 'Aa31LG3G7110' => 'aar', 'Aa31LG6G13160' => 'aar', 'Aa31LG7G10770' => 'aar', 'Aa31LG7G3830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2723' => 'aag', 'Actinidia08045' => 'ach', 'Actinidia08888' => 'ach', 'Actinidia18333' => 'ach', 'Actinidia19334' => 'ach', 'Actinidia25552' => 'ach', 'Actinidia26089' => 'ach', 'Actinidia30615' => 'ach', 'Actinidia30616' => 'ach', 'Actinidia33083' => 'ach', 'Actinidia35762' => 'ach', 'Ah.02g110620' => 'amhyb', 'Ah.11g046390' => 'amhyb', 'AL1G31670' => 'aly', 'AL6G23730' => 'aly', 'AL7G14740' => 'aly', 'AL7G14750' => 'aly', 'AL7G14760' => 'aly', 'AL7G28220' => 'aly', 'AL8G24940' => 'aly', 'Aqoxy3G01665' => 'aox', 'Aqoxy3G02853' => 'aox', 'Aqoxy5G01513' => 'aox', 'Aqoxy5G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8SKA4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ75LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKDA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0LJZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7REX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZP4YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWX7I5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2QKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS0L9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPCD8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q161UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC7XCF' => 'arhy', 'AT1G19100' => 'ath', 'AT4G24970' => 'ath', 'AT4G36270' => 'ath', 'AT4G36280' => 'ath', 'AT4G36290' => 'ath', 'AT5G13130' => 'ath', 'AT5G50780' => 'ath', 'ATR0582G266' => 'atr', 'ATR0661G195' => 'atr', 'ATR1152G031' => 'atr', 'Atru.chr11.2382' => 'acertr', 'Atru.chr12.2337' => 'acertr', 'Atru.chr3.744' => 'acertr', 'Atru.chr6.1870' => 'acertr', 'Atru.chr9.2515' => 'acertr', 'AUR62004120' => 'cqu', 'AUR62005667' => 'cqu', 'AUR62007634' => 'cqu', 'AUR62008186' => 'cqu', 'AUR62008187' => 'cqu', 'AUR62008188' => 'cqu', 'AUR62027954' => 'cqu', 'AUR62028766' => 'cqu', 'AUR62028767' => 'cqu', 'AUR62028768' => 'cqu', 'AUR62028886' => 'cqu', 'AUR62029563' => 'cqu', 'AUR62038832' => 'cqu', 'BcaB01g04149' => 'bca', 'BcaB03g12940' => 'bca', 'BcaB03g13090' => 'bca', 'BcaB03g14466' => 'bca', 'BcaB05g24035' => 'bca', 'BcaC01g06050' => 'bca', 'BcaC04g19148' => 'bca', 'BcaC04g20761' => 'bca', 'BcaC06g32845' => 'bca', 'BcaC07g41274' => 'bca', 'BcaC09g50827' => 'bca', 'BcaNung00741' => 'bca', 'BcaNung00742' => 'bca', 'BcaNung01859' => 'bca', 'BcaNung03985' => 'bca', 'BcaNung03989' => 'bca', 'BcaNung05661' => 'bca', 'BolC1t00257H' => 'bol', 'BolC1t01956H' => 'bol', 'BolC2t06534H' => 'bol', 'BolC3t14334H' => 'bol', 'BolC5t30451H' => 'bol', 'BolC7t45880H' => 'bol', 'BolC7t46586H' => 'bol', 'BolC8t49301H' => 'bol', 'BolC8t51837H' => 'bol', 'BolC9t56822H' => 'bol', 'BolC9t59235H' => 'bol', 'BraA01t00234Z' => 'bra', 'BraA01t01563Z' => 'bra', 'BraA02t05147Z' => 'bra', 'BraA03t10947Z' => 'bra', 'BraA03t14633Z' => 'bra', 'BraA08t35112Z' => 'bra', 'BraA09t41330Z' => 'bra', 'BraA10t44570Z' => 'bra', 'C01p02670' => 'bna', 'C01p20260' => 'bna', 'C02p05890' => 'bna', 'C03p19530' => 'bna', 'C05p17470' => 'bna', 'C07p53900' => 'bna', 'C07p61630' => 'bna', 'C08p16800' => 'bna', 'C08p42810' => 'bna', 'C09p39480' => 'bna', 'C09p63980' => 'bna', 'CAN.G1001.7' => 'can', 'CAN.G1034.55' => 'can', 'CAN.G143.7' => 'can', 'CAN.G3340.1' => 'can', 'CAN.G358.19' => 'can', 'CAN.G373.2' => 'can', 'CAN.G674.16' => 'can', 'CAN.G674.17' => 'can', 'CAN.G674.18' => 'can', 'CAN.G732.2' => 'can', 'CAN.G732.3' => 'can', 'CAN.G993.39' => 'can', 'CANSAT01G2052' => 'cansat', 'CANSAT80G0070' => 'cansat', 'CANSAT80G0483' => 'cansat', 'CANSAT80G0625' => 'cansat', 'CARHR019690' => 'chi', 'CARHR080280' => 'chi', 'CARHR152750' => 'chi', 'CARHR152760' => 'chi', 'CARHR152770' => 'chi', 'CARHR200340' => 'chi', 'CARHR232370' => 'chi', 'CARHR244670' => 'chi', 'CARHR244680' => 'chi', 'CARHR257520' => 'chi', 'Carub.0001s1872' => 'cru', 'Carub.0006s1130' => 'cru', 'Carub.0007s0396' => 'cru', 'Carub.0007s0397' => 'cru', 'Carub.0007s1608' => 'cru', 'Carub.0008s1068' => 'cru', 'Carub.0008s1077' => 'cru', 'Ca_16158_v3' => 'car', 'Ca_17571_v3' => 'car', 'Ca_21936_v3' => 'car', 'Ca_22350_v3' => 'car', 'CBR_g22445' => 'cbr', 'CBR_g26290' => 'cbr', 'Cc04_g09610' => 'ccan', 'Cc04_g12280' => 'ccan', 'Cc07_g10230' => 'ccan', 'CDE02G0093' => 'cde', 'CDE02G0701' => 'cde', 'CDE04G1050' => 'cde', 'CDE05G1833' => 'cde', 'CDE05G3058' => 'cde', 'CDE05G3380' => 'cde', 'CDE06G0536' => 'cde', 'Cfa006923' => 'cfa', 'Cfa009402' => 'cfa', 'Cfa018751' => 'cfa', 'Cfa019164' => 'cfa', 'Cfa022935' => 'cfa', 'Ciclev10019081m.g' => 'ccl', 'Ciclev10025076m.g' => 'ccl', 'Ciclev10030712m.g' => 'ccl', 'Ciclev10033760m.g' => 'ccl', 'CiPaw.05G105600' => 'cil', 'CiPaw.08G136700' => 'cil', 'CiPaw.11G003900' => 'cil', 'CiPaw.11G023700' => 'cil', 'CiPaw.12G003700' => 'cil', 'ClCG06G017100' => 'cla', 'ClCG06G018110' => 'cla', 'ClCG07G008800' => 'cla', 'ClCG07G015330' => 'cla', 'COL.COLO4_13698' => 'col', 'COL.COLO4_16659' => 'col', 'COL.COLO4_21986' => 'col', 'COL.COLO4_24049' => 'col', 'COL.COLO4_29061' => 'col', 'COL.COLO4_29075' => 'col', 'COL.COLO4_30094' => 'col', 'Cpa.g.c33689' => 'cpa', 'Cpa.g.sc108.39' => 'cpa', 'Cpa.g.sc108.41' => 'cpa', 'Cpa.g.sc1163.1' => 'cpa', 'Cpa.g.sc4.155' => 'cpa', 'Cpa.g.sc6.194' => 'cpa', 'CsaV3_1G000340' => 'csa', 'CsaV3_1G001400' => 'csa', 'CsaV3_4G002220' => 'csa', 'CsaV3_4G005370' => 'csa', 'CSS0007487' => 'camsi', 'CSS0008066' => 'camsi', 'CSS0009120' => 'camsi', 'CSS0015512' => 'camsi', 'CSS0022409' => 'camsi', 'CSS0025358' => 'camsi', 'CSS0044547' => 'camsi', 'DCAR_013057' => 'dca', 'DCAR_015058' => 'dca', 'DCAR_016027' => 'dca', 'DCAR_017327' => 'dca', 'DCAR_020743' => 'dca', 'DCAR_026157' => 'dca', 'DCAR_032339' => 'dca', 'DCAR_032340' => 'dca', 'Dinv11200' => 'din', 'Dinv11201' => 'din', 'Dinv20631' => 'din', 'Dinv23182' => 'din', 'Dinv33466' => 'din', 'Dinv33583' => 'din', 'Dinv38565' => 'din', 'Duzib068G0200' => 'dzi', 'Duzib147G0132' => 'dzi', 'Duzib147G0635' => 'dzi', 'Duzib205G1670' => 'dzi', 'Duzib251G0606' => 'dzi', 'ECA232G3336' => 'eca', 'ECA232G3763' => 'eca', 'ECA232G4845' => 'eca', 'ECA234G1607' => 'eca', 'ECA246G0932' => 'eca', 'ECA247G0781' => 'eca', 'ECA247G1932' => 'eca', 'ECA247G2079' => 'eca', 'ECA247G3338' => 'eca', 'ECA247G4115' => 'eca', 'EL10Ac3g06552' => 'bvu', 'EL10Ac5g10721' => 'bvu', 'EL10Ac5g10722' => 'bvu', 'EL10Ac5g10723' => 'bvu', 'EL10Ac5g11361' => 'bvu', 'EL10Ac6g13553' => 'bvu', 'EL10As8g23872' => 'bvu', 'Eucgr.B00250' => 'egr', 'Eucgr.B00251' => 'egr', 'Eucgr.B03533' => 'egr', 'Eucgr.I02381' => 'egr', 'Eucgr.K02700' => 'egr', 'FAN02G0174' => 'fan', 'FAN02G3146' => 'fan', 'FAN04G1672' => 'fan', 'FAN04G2273' => 'fan', 'FAN05G2791' => 'fan', 'FAN05G4035' => 'fan', 'FAN07G0834' => 'fan', 'FAN08G1198' => 'fan', 'FAN09G4182' => 'fan', 'FAN12G0496' => 'fan', 'FAN13G1027' => 'fan', 'FAN13G2951' => 'fan', 'FAN14G0705' => 'fan', 'FAN14G0720' => 'fan', 'FAN17G0201' => 'fan', 'FAN17G2665' => 'fan', 'FAN18G1456' => 'fan', 'FAN18G1525' => 'fan', 'FAN18G3500' => 'fan', 'FAN28G2670' => 'fan', 'FvH4_1g12391' => 'fve', 'FvH4_4g23220' => 'fve', 'FvH4_5g08810' => 'fve', 'FvH4_5g28960' => 'fve', 'FvH4_6g42820' => 'fve', 'FvH4_6g51110' => 'fve', 'Glyma.02G051802' => 'gma', 'Glyma.04G185300' => 'gma', 'Glyma.05G202900' => 'gma', 'Glyma.08G010300' => 'gma', 'Glyma.16G131900' => 'gma', 'Glyma.17G087900' => 'gma', 'Gohir.A07G048600' => 'ghi', 'Gohir.A11G179000' => 'ghi', 'Gohir.A12G140900' => 'ghi', 'Gohir.A12G140950' => 'ghi', 'Gohir.A12G191700' => 'ghi', 'Gohir.A13G086300' => 'ghi', 'Gohir.D07G052900' => 'ghi', 'Gohir.D11G186600' => 'ghi', 'Gohir.D12G145575' => 'ghi', 'Gohir.D12G145650' => 'ghi', 'Gohir.D12G145725' => 'ghi', 'Gohir.D12G194050' => 'ghi', 'Gohir.D13G091800' => 'ghi', 'Gorai.001G055900' => 'gra', 'Gorai.007G198400' => 'gra', 'Gorai.008G157000' => 'gra', 'Gorai.008G157100' => 'gra', 'Gorai.008G208700' => 'gra', 'Gorai.010G138700' => 'gra', 'GSVIVG01000977001' => 'vvi', 'GSVIVG01007708001' => 'vvi', 'GSVIVG01008587001' => 'vvi', 'GSVIVG01018849001' => 'vvi', 'GSVIVG01032432001' => 'vvi', 'HanXRQChr02g0034131' => 'han', 'HanXRQChr02g0035981' => 'han', 'HanXRQChr02g0035991' => 'han', 'HanXRQChr05g0155611' => 'han', 'HanXRQChr05g0155621' => 'han', 'HanXRQChr08g0236501' => 'han', 'HanXRQChr09g0261321' => 'han', 'HanXRQChr09g0272081' => 'han', 'HanXRQChr10g0310741' => 'han', 'HanXRQChr11g0325591' => 'han', 'HanXRQChr12g0385691' => 'han', 'HanXRQChr13g0387801' => 'han', 'HanXRQChr15g0463011' => 'han', 'Haze_03826' => 'cav', 'Haze_03827' => 'cav', 'Haze_07183' => 'cav', 'Haze_07537' => 'cav', 'Haze_07539' => 'cav', 'Haze_12461' => 'cav', 'Haze_16115' => 'cav', 'Haze_16808' => 'cav', 'Haze_18531' => 'cav', 'Hma1.2p1_0046F.1_g026700' => 'hma', 'Hma1.2p1_0046F.1_g026710' => 'hma', 'Hma1.2p1_0168F.1_g074340' => 'hma', 'Hma1.2p1_0266F.1_g107030' => 'hma', 'Hma1.2p1_0266F.1_g107060' => 'hma', 'Hma1.2p1_0275F.1_g110510' => 'hma', 'Hma1.2p1_0592F.1_g185490' => 'hma', 'Hma1.2p1_0592F.1_g185500' => 'hma', 'Hma1.2p1_0592F.1_g185510' => 'hma', 'Hma1.2p1_0592F.1_g185520' => 'hma', 'Hma1.2p1_0592F.1_g185530' => 'hma', 'Hma1.2p1_0818F.1_g223450' => 'hma', 'HPP92_009708' => 'vpl', 'HPP92_009793' => 'vpl', 'HPP92_009796' => 'vpl', 'HPP92_009797' => 'vpl', 'HPP92_014940' => 'vpl', 'HPP92_014988' => 'vpl', 'Hund02463' => 'sun', 'Hund02760' => 'sun', 'Hund05071' => 'sun', 'Hund10108' => 'sun', 'Hund11204' => 'sun', 'Hund14016' => 'sun', 'Hund16464' => 'sun', 'Lalb_Chr09g0333391' => 'lal', 'Lalb_Chr11g0070461' => 'lal', 'Lalb_Chr12g0201671' => 'lal', 'Lalb_Chr13g0297161' => 'lal', 'Lj1g0002823' => 'lja', 'Lj3C1074T6' => 'lonja', 'Lj4A212T28' => 'lonja', 'Lj4g0005516' => 'lja', 'Lj4g0013705' => 'lja', 'Lj4g0027865' => 'lja', 'Lj5C92G16' => 'lonja', 'Lj5C92T12' => 'lonja', 'Lj7C596T3' => 'lonja', 'Lj9A446G59' => 'lonja', 'Lj9A482G21' => 'lonja', 'Lsat_1_v5_gn_1_28261' => 'lsa', 'Lsat_1_v5_gn_1_28281' => 'lsa', 'Lsat_1_v5_gn_1_32721' => 'lsa', 'Lsat_1_v5_gn_4_151760' => 'lsa', 'Lsat_1_v5_gn_4_2120' => 'lsa', 'Lsat_1_v5_gn_4_75761' => 'lsa', 'Lsat_1_v5_gn_5_10920' => 'lsa', 'Manes.02G099900' => 'mes', 'Manes.11G096200' => 'mes', 'Manes.12G007200' => 'mes', 'Manes.14G048300' => 'mes', 'Manes.17G114700' => 'mes', 'Mapoly0002s0070' => 'mpo', 'Mapoly0029s0099' => 'mpo', 'MBI07_g24742_MAGBIO' => 'mbi', 'MBI10_g27988_MAGBIO' => 'mbi', 'MBI11_g13057_MAGBIO' => 'mbi', 'MD02G1137200' => 'mdo', 'MD06G1137200' => 'mdo', 'MD07G1122300' => 'mdo', 'MD09G1078200' => 'mdo', 'MD13G1123700' => 'mdo', 'MD14G1151900' => 'mdo', 'MD17G1030900' => 'mdo', 'MD17G1068200' => 'mdo', 'MD17G1068600' => 'mdo', 'Medtr3g077540' => 'mtr', 'Medtr4g105530' => 'mtr', 'Medtr8g076580' => 'mtr', 'Medtr8g076590' => 'mtr', 'Medtr8g096410' => 'mtr', 'MELO3C016411.2' => 'cme', 'MELO3C017780.2' => 'cme', 'MELO3C022560.2' => 'cme', 'MELO3C026187.2' => 'cme', 'MELO3C026286.2' => 'cme', 'MELO3C032854.2' => 'cme', 'Migut.H02495' => 'egut', 'Migut.I00561' => 'egut', 'Migut.K01015' => 'egut', 'Migut.K01016' => 'egut', 'Migut.L00743' => 'egut', 'Migut.L00744' => 'egut', 'Migut.L00746' => 'egut', 'Migut.L00798' => 'egut', 'Migut.L00799' => 'egut', 'Migut.N02096' => 'egut', 'MSTRG.11259' => 'ama', 'MSTRG.23142' => 'ama', 'MSTRG.2499' => 'ama', 'Nitab4.5_0000003g0730' => 'nta', 'Nitab4.5_0000137g0020' => 'nta', 'Nitab4.5_0000721g0210' => 'nta', 'Nitab4.5_0000723g0050' => 'nta', 'Nitab4.5_0000913g0070' => 'nta', 'Nitab4.5_0001332g0040' => 'nta', 'Nitab4.5_0001771g0050' => 'nta', 'Nitab4.5_0001918g0050' => 'nta', 'Nitab4.5_0002686g0030' => 'nta', 'Nitab4.5_0003156g0020' => 'nta', 'Nitab4.5_0003383g0040' => 'nta', 'Nitab4.5_0003918g0010' => 'nta', 'Nitab4.5_0006760g0010' => 'nta', 'Nn1g05981' => 'nnu', 'Nn1g06288' => 'nnu', 'Nn3g16371' => 'nnu', 'Nn3g16786' => 'nnu', 'Nn4g22232' => 'nnu', 'Oeu005144.1' => 'oeu', 'Oeu005145.1' => 'oeu', 'Oeu011348.1' => 'oeu', 'Oeu016415.1' => 'oeu', 'Oeu023501.1' => 'oeu', 'Oeu044473.1' => 'oeu', 'Oeu048892.2' => 'oeu', 'Os01g0549200' => 'osa', 'Os02g0469300' => 'osa', 'Os04g0311100' => 'osa', 'Os06g0474900' => 'osa', 'Os10g0181700' => 'osa', 'Os11g0454800' => 'osa', 'Peaxi162Scf00037g00714' => 'pax', 'Peaxi162Scf00084g01217' => 'pax', 'Peaxi162Scf00257g00217' => 'pax', 'Peaxi162Scf00516g00215' => 'pax', 'Peaxi162Scf00689g00123' => 'pax', 'PGR044G2719' => 'pgr', 'PGR083G1360' => 'pgr', 'PGR102G2849' => 'pgr', 'PGR119G2534' => 'pgr', 'PGSC0003DMG400003538' => 'stu', 'PGSC0003DMG400028138' => 'stu', 'PGSC0003DMG400031732' => 'stu', 'PGSC0003DMG400038165' => 'stu', 'Phvul.002G284600' => 'pvu', 'Phvul.003G258200' => 'pvu', 'Phvul.009G176500' => 'pvu', 'Potri.003G167201' => 'ptr', 'Potri.005G118400' => 'ptr', 'Potri.012G089000' => 'ptr', 'Potri.012G102800' => 'ptr', 'Potri.015G079400' => 'ptr', 'Potri.015G100900' => 'ptr', 'Pp3c14_9810' => 'ppa', 'Pp3c15_10450' => 'ppa', 'Pp3c20_19150' => 'ppa', 'Pp3c23_12740' => 'ppa', 'Pp3c23_6310' => 'ppa', 'Pp3c24_3720' => 'ppa', 'Pp3c27_2580' => 'ppa', 'Pp3c9_8990' => 'ppa', 'PRCOL_00002854' => 'pco', 'Prupe.1G221200' => 'ppe', 'Prupe.3G289000' => 'ppe', 'Prupe.5G147000' => 'ppe', 'Prupe.6G157300' => 'ppe', 'Prupe.7G163400' => 'ppe', 'Psat0s2177g0040' => 'psa', 'Psat3g174760' => 'psa', 'Psat3g192160' => 'psa', 'Psat4g058520' => 'psa', 'Psat4g096840' => 'psa', 'Psat7g037320' => 'psa', 'PSO017G1274' => 'pso', 'PSO017G5166' => 'pso', 'PSO063G4558' => 'pso', 'PSO170G4458' => 'pso', 'PSO170G5005' => 'pso', 'PSO210G6156' => 'pso', 'PSO210G6635' => 'pso', 'PSO210G7397' => 'pso', 'PSO210G7700' => 'pso', 'PSO455G0035' => 'pso', 'PSO455G0180' => 'pso', 'PSO478G4515' => 'pso', 'PSO832G1305' => 'pso', 'PSO832G3489' => 'pso', 'QL02p075247' => 'qlo', 'QL03p051148' => 'qlo', 'QL05p010313' => 'qlo', 'QL06p034627' => 'qlo', 'QL10p001889' => 'qlo', 'QL10p010846' => 'qlo', 'RcHm_v2.0_Chr1g0350621' => 'rch', 'RcHm_v2.0_Chr1g0350641' => 'rch', 'RcHm_v2.0_Chr2g0092891' => 'rch', 'RcHm_v2.0_Chr2g0100251' => 'rch', 'RcHm_v2.0_Chr2g0158661' => 'rch', 'RcHm_v2.0_Chr2g0172741' => 'rch', 'RcHm_v2.0_Chr4g0429571' => 'rch', 'RcHm_v2.0_Chr5g0042471' => 'rch', 'RcHm_v2.0_Chr7g0189451' => 'rch', 'Rhsim08G0052000' => 'rsi', 'Rhsim08G0174400' => 'rsi', 'Rhsim08G0193200' => 'rsi', 'Rhsim10G0214800' => 'rsi', 'Rhsim10G0214900' => 'rsi', 'Rhsim10G0215000' => 'rsi', 'Rhsim12G0022900' => 'rsi', 'Rhsim12G0177500' => 'rsi', 'Rhsim12G0177700' => 'rsi', 'Sabra03G0122600' => 'sbr', 'Sabra05G0097400' => 'sbr', 'Sabra12G0064100' => 'sbr', 'Sabra15G0121300' => 'sbr', 'SalBow2G0642' => 'sbo', 'SalBow5G2667' => 'sbo', 'SalBow5G4873' => 'sbo', 'SalBow8G2395' => 'sbo', 'Sc03g0003290' => 'sci', 'Sc10g0010130' => 'sci', 'Sc22g0003650' => 'sci', 'Sed0001603' => 'sed', 'Sed0004259' => 'sed', 'Sed0006789' => 'sed', 'Sed0011838' => 'sed', 'Sed0012964' => 'sed', 'Sed0016383' => 'sed', 'Sed0019010' => 'sed', 'Sed0020188' => 'sed', 'SEGI_04702' => 'sgi', 'SEGI_17231' => 'sgi', 'SEGI_18877' => 'sgi', 'SEGI_25196' => 'sgi', 'SEGI_25515' => 'sgi', 'SEGI_28445' => 'sgi', 'SEGI_37452' => 'sgi', 'SGA_v2.0_scaffold188G40336' => 'sas', 'SGA_v2.0_scaffold228G43247' => 'sas', 'SGA_v2.0_scaffold280G46853' => 'sas', 'SGA_v2.0_scaffold34G13808' => 'sas', 'SGA_v2.0_scaffold40G15576' => 'sas', 'SGA_v2.0_scaffold611G53188' => 'sas', 'SGA_v2.0_scaffold78G25461' => 'sas', 'SGA_v2.0_scaffold90G27888' => 'sas', 'SHI08601' => 'shi', 'SHI08606' => 'shi', 'SHI17117' => 'shi', 'SHI17119' => 'shi', 'SMO118G0201' => 'smo', 'SMO169G0247' => 'smo', 'SMO176G0006' => 'smo', 'SMO176G0015' => 'smo', 'SMO202G0006' => 'smo', 'SMO240G0050' => 'smo', 'SMO286G0009' => 'smo', 'SMO338G0033' => 'smo', 'SMO356G0533' => 'smo', 'SMO364G0382' => 'smo', 'SMO367G0166' => 'smo', 'SMO367G1098' => 'smo', 'Solyc01g009920.3' => 'sly', 'Solyc01g099300.3' => 'sly', 'Solyc02g084700.3' => 'sly', 'Solyc03g097520.3' => 'sly', 'Solyc06g071580.3' => 'sly', 'Solyc10g081760.3' => 'sly', 'Sopen01g005480' => 'spe', 'Sopen01g042850' => 'spe', 'Sopen02g029370' => 'spe', 'Sopen03g028280' => 'spe', 'Sopen06g027870' => 'spe', 'Sopen10g032270' => 'spe', 'Sp5g18180' => 'spa', 'Sp6g12880' => 'spa', 'Sp6g30850' => 'spa', 'Sp7g22960' => 'spa', 'Sp7g34010' => 'spa', 'SpUn1326_0010' => 'spa', 'TAR371G0242' => 'tar', 'TAR622G0638' => 'tar', 'TAR628G1548' => 'tar', 'TAR629G1079' => 'tar', 'TAR629G3413' => 'tar', 'THA.LOC104804249' => 'tha', 'THA.LOC104808315' => 'tha', 'THA.LOC104809238' => 'tha', 'THA.LOC104825484' => 'tha', 'Thecc.01G025500' => 'tca', 'Thecc.03G015800' => 'tca', 'Thecc.03G018000' => 'tca', 'Thecc.03G134800' => 'tca', 'Thecc.04G014700' => 'tca', 'Thhalv10006991m.g' => 'esa', 'Thhalv10012707m.g' => 'esa', 'Thhalv10015739m.g' => 'esa', 'Thhalv10024553m.g' => 'esa', 'Thhalv10024673m.g' => 'esa', 'Thhalv10029187m.g' => 'esa', 'TPR.G12971' => 'tpr', 'TPR.G29396' => 'tpr', 'TPR.G33376' => 'tpr', 'TPR.G35508' => 'tpr', 'TPR.G35516' => 'tpr', 'TPR.G37317' => 'tpr', 'TPR.G37389' => 'tpr', 'TPR.G37523' => 'tpr', 'TPR.G559' => 'tpr', 'TWI14G0070' => 'twi', 'TWI14G0729' => 'twi', 'TWI18G0596' => 'twi', 'TWI39G0780' => 'twi', 'TWI39G0850' => 'twi', 'TWI73G1052' => 'twi', 'unitig_52.g17485' => 'ugi', 'unitig_61.g26355' => 'ugi', 'vmacro01040' => 'vma', 'vmacro16731' => 'vma', 'vmacro18270' => 'vma', 'vmacro19142' => 'vma', 'vmacro19407' => 'vma', 'vmacro19408' => 'vma', 'vmacro21899' => 'vma', 'vmacro21900' => 'vma', 'vmacro21901' => 'vma', 'VMungo0251G0490' => 'vmu', 'VMungo0251G1748' => 'vmu', 'VMungo1309G0421' => 'vmu', 'Zm00001eb086500' => 'zma', 'Zm00001eb150680' => 'zma', 'Zm00001eb162330' => 'zma', 'Zm00001eb203130' => 'zma', 'Zm00001eb369480' => 'zma', 'Zm00001eb382340' => 'zma', 'Zm00001eb416360' => 'zma' ), 'gf_id' => 'HOM05D000902', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000902' ), 'data_identifier' => 'HOM05D000902', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000902', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '663', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02470' => 'bna', 'A01p16260' => 'bna', 'A02p01680' => 'bna', 'A03p16600' => 'bna', 'A03p55660' => 'bna', 'A03p64160' => 'bna', 'A03p64170' => 'bna', 'A08p31900' => 'bna', 'A09p59530' => 'bna', 'A10p08230' => 'bna', 'A10p25090' => 'bna', 'Aa31LG3G7100' => 'aar', 'Aa31LG3G7110' => 'aar', 'Aa31LG6G13160' => 'aar', 'Aa31LG7G10770' => 'aar', 'Aa31LG7G3830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2723' => 'aag', 'Actinidia08045' => 'ach', 'Actinidia08888' => 'ach', 'Actinidia18333' => 'ach', 'Actinidia19334' => 'ach', 'Actinidia25552' => 'ach', 'Actinidia26089' => 'ach', 'Actinidia30615' => 'ach', 'Actinidia30616' => 'ach', 'Actinidia33083' => 'ach', 'Actinidia35762' => 'ach', 'Ah.02g110620' => 'amhyb', 'Ah.11g046390' => 'amhyb', 'AL1G31670' => 'aly', 'AL6G23730' => 'aly', 'AL7G14740' => 'aly', 'AL7G14750' => 'aly', 'AL7G14760' => 'aly', 'AL7G28220' => 'aly', 'AL8G24940' => 'aly', 'Aqoxy3G01665' => 'aox', 'Aqoxy3G02853' => 'aox', 'Aqoxy5G01513' => 'aox', 'Aqoxy5G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8SKA4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ75LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKDA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0LJZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7REX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZP4YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWX7I5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2QKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS0L9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPCD8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q161UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC7XCF' => 'arhy', 'AT1G19100' => 'ath', 'AT4G24970' => 'ath', 'AT4G36270' => 'ath', 'AT4G36280' => 'ath', 'AT4G36290' => 'ath', 'AT5G13130' => 'ath', 'AT5G50780' => 'ath', 'ATR0582G266' => 'atr', 'ATR0661G195' => 'atr', 'ATR1152G031' => 'atr', 'Atru.chr11.2382' => 'acertr', 'Atru.chr12.2337' => 'acertr', 'Atru.chr3.744' => 'acertr', 'Atru.chr6.1870' => 'acertr', 'Atru.chr9.2515' => 'acertr', 'AUR62004120' => 'cqu', 'AUR62005667' => 'cqu', 'AUR62007634' => 'cqu', 'AUR62008186' => 'cqu', 'AUR62008187' => 'cqu', 'AUR62008188' => 'cqu', 'AUR62027954' => 'cqu', 'AUR62028766' => 'cqu', 'AUR62028767' => 'cqu', 'AUR62028768' => 'cqu', 'AUR62028886' => 'cqu', 'AUR62029563' => 'cqu', 'AUR62038832' => 'cqu', 'BcaB01g04149' => 'bca', 'BcaB03g12940' => 'bca', 'BcaB03g13090' => 'bca', 'BcaB03g14466' => 'bca', 'BcaB05g24035' => 'bca', 'BcaC01g06050' => 'bca', 'BcaC04g19148' => 'bca', 'BcaC04g20761' => 'bca', 'BcaC06g32845' => 'bca', 'BcaC07g41274' => 'bca', 'BcaC09g50827' => 'bca', 'BcaNung00741' => 'bca', 'BcaNung00742' => 'bca', 'BcaNung01859' => 'bca', 'BcaNung03985' => 'bca', 'BcaNung03989' => 'bca', 'BcaNung05661' => 'bca', 'BolC1t00257H' => 'bol', 'BolC1t01956H' => 'bol', 'BolC2t06534H' => 'bol', 'BolC3t14334H' => 'bol', 'BolC5t30451H' => 'bol', 'BolC7t45880H' => 'bol', 'BolC7t46586H' => 'bol', 'BolC8t49301H' => 'bol', 'BolC8t51837H' => 'bol', 'BolC9t56822H' => 'bol', 'BolC9t59235H' => 'bol', 'BraA01t00234Z' => 'bra', 'BraA01t01563Z' => 'bra', 'BraA02t05147Z' => 'bra', 'BraA03t10947Z' => 'bra', 'BraA03t14633Z' => 'bra', 'BraA08t35112Z' => 'bra', 'BraA09t41330Z' => 'bra', 'BraA10t44570Z' => 'bra', 'C01p02670' => 'bna', 'C01p20260' => 'bna', 'C02p05890' => 'bna', 'C03p19530' => 'bna', 'C05p17470' => 'bna', 'C07p53900' => 'bna', 'C07p61630' => 'bna', 'C08p16800' => 'bna', 'C08p42810' => 'bna', 'C09p39480' => 'bna', 'C09p63980' => 'bna', 'CAN.G1001.7' => 'can', 'CAN.G1034.55' => 'can', 'CAN.G143.7' => 'can', 'CAN.G3340.1' => 'can', 'CAN.G358.19' => 'can', 'CAN.G373.2' => 'can', 'CAN.G674.16' => 'can', 'CAN.G674.17' => 'can', 'CAN.G674.18' => 'can', 'CAN.G732.2' => 'can', 'CAN.G732.3' => 'can', 'CAN.G993.39' => 'can', 'CANSAT01G2052' => 'cansat', 'CANSAT80G0070' => 'cansat', 'CANSAT80G0483' => 'cansat', 'CANSAT80G0625' => 'cansat', 'CARHR019690' => 'chi', 'CARHR080280' => 'chi', 'CARHR152750' => 'chi', 'CARHR152760' => 'chi', 'CARHR152770' => 'chi', 'CARHR200340' => 'chi', 'CARHR232370' => 'chi', 'CARHR244670' => 'chi', 'CARHR244680' => 'chi', 'CARHR257520' => 'chi', 'Carub.0001s1872' => 'cru', 'Carub.0006s1130' => 'cru', 'Carub.0007s0396' => 'cru', 'Carub.0007s0397' => 'cru', 'Carub.0007s1608' => 'cru', 'Carub.0008s1068' => 'cru', 'Carub.0008s1077' => 'cru', 'Ca_16158_v3' => 'car', 'Ca_17571_v3' => 'car', 'Ca_21936_v3' => 'car', 'Ca_22350_v3' => 'car', 'CBR_g22445' => 'cbr', 'CBR_g26290' => 'cbr', 'Cc04_g09610' => 'ccan', 'Cc04_g12280' => 'ccan', 'Cc07_g10230' => 'ccan', 'CDE02G0093' => 'cde', 'CDE02G0701' => 'cde', 'CDE04G1050' => 'cde', 'CDE05G1833' => 'cde', 'CDE05G3058' => 'cde', 'CDE05G3380' => 'cde', 'CDE06G0536' => 'cde', 'Cfa006923' => 'cfa', 'Cfa009402' => 'cfa', 'Cfa018751' => 'cfa', 'Cfa019164' => 'cfa', 'Cfa022935' => 'cfa', 'Ciclev10019081m.g' => 'ccl', 'Ciclev10025076m.g' => 'ccl', 'Ciclev10030712m.g' => 'ccl', 'Ciclev10033760m.g' => 'ccl', 'CiPaw.05G105600' => 'cil', 'CiPaw.08G136700' => 'cil', 'CiPaw.11G003900' => 'cil', 'CiPaw.11G023700' => 'cil', 'CiPaw.12G003700' => 'cil', 'ClCG06G017100' => 'cla', 'ClCG06G018110' => 'cla', 'ClCG07G008800' => 'cla', 'ClCG07G015330' => 'cla', 'COL.COLO4_13698' => 'col', 'COL.COLO4_16659' => 'col', 'COL.COLO4_21986' => 'col', 'COL.COLO4_24049' => 'col', 'COL.COLO4_29061' => 'col', 'COL.COLO4_29075' => 'col', 'COL.COLO4_30094' => 'col', 'Cpa.g.c33689' => 'cpa', 'Cpa.g.sc108.39' => 'cpa', 'Cpa.g.sc108.41' => 'cpa', 'Cpa.g.sc1163.1' => 'cpa', 'Cpa.g.sc4.155' => 'cpa', 'Cpa.g.sc6.194' => 'cpa', 'CsaV3_1G000340' => 'csa', 'CsaV3_1G001400' => 'csa', 'CsaV3_4G002220' => 'csa', 'CsaV3_4G005370' => 'csa', 'CSS0007487' => 'camsi', 'CSS0008066' => 'camsi', 'CSS0009120' => 'camsi', 'CSS0015512' => 'camsi', 'CSS0022409' => 'camsi', 'CSS0025358' => 'camsi', 'CSS0044547' => 'camsi', 'DCAR_013057' => 'dca', 'DCAR_015058' => 'dca', 'DCAR_016027' => 'dca', 'DCAR_017327' => 'dca', 'DCAR_020743' => 'dca', 'DCAR_026157' => 'dca', 'DCAR_032339' => 'dca', 'DCAR_032340' => 'dca', 'Dinv11200' => 'din', 'Dinv11201' => 'din', 'Dinv20631' => 'din', 'Dinv23182' => 'din', 'Dinv33466' => 'din', 'Dinv33583' => 'din', 'Dinv38565' => 'din', 'Duzib068G0200' => 'dzi', 'Duzib147G0132' => 'dzi', 'Duzib147G0635' => 'dzi', 'Duzib205G1670' => 'dzi', 'Duzib251G0606' => 'dzi', 'ECA232G3336' => 'eca', 'ECA232G3763' => 'eca', 'ECA232G4845' => 'eca', 'ECA234G1607' => 'eca', 'ECA246G0932' => 'eca', 'ECA247G0781' => 'eca', 'ECA247G1932' => 'eca', 'ECA247G2079' => 'eca', 'ECA247G3338' => 'eca', 'ECA247G4115' => 'eca', 'EL10Ac3g06552' => 'bvu', 'EL10Ac5g10721' => 'bvu', 'EL10Ac5g10722' => 'bvu', 'EL10Ac5g10723' => 'bvu', 'EL10Ac5g11361' => 'bvu', 'EL10Ac6g13553' => 'bvu', 'EL10As8g23872' => 'bvu', 'Eucgr.B00250' => 'egr', 'Eucgr.B00251' => 'egr', 'Eucgr.B03533' => 'egr', 'Eucgr.I02381' => 'egr', 'Eucgr.K02700' => 'egr', 'FAN02G0174' => 'fan', 'FAN02G3146' => 'fan', 'FAN04G1672' => 'fan', 'FAN04G2273' => 'fan', 'FAN05G2791' => 'fan', 'FAN05G4035' => 'fan', 'FAN07G0834' => 'fan', 'FAN08G1198' => 'fan', 'FAN09G4182' => 'fan', 'FAN12G0496' => 'fan', 'FAN13G1027' => 'fan', 'FAN13G2951' => 'fan', 'FAN14G0705' => 'fan', 'FAN14G0720' => 'fan', 'FAN17G0201' => 'fan', 'FAN17G2665' => 'fan', 'FAN18G1456' => 'fan', 'FAN18G1525' => 'fan', 'FAN18G3500' => 'fan', 'FAN28G2670' => 'fan', 'FvH4_1g12391' => 'fve', 'FvH4_4g23220' => 'fve', 'FvH4_5g08810' => 'fve', 'FvH4_5g28960' => 'fve', 'FvH4_6g42820' => 'fve', 'FvH4_6g51110' => 'fve', 'Glyma.02G051802' => 'gma', 'Glyma.04G185300' => 'gma', 'Glyma.05G202900' => 'gma', 'Glyma.08G010300' => 'gma', 'Glyma.16G131900' => 'gma', 'Glyma.17G087900' => 'gma', 'Gohir.A07G048600' => 'ghi', 'Gohir.A11G179000' => 'ghi', 'Gohir.A12G140900' => 'ghi', 'Gohir.A12G140950' => 'ghi', 'Gohir.A12G191700' => 'ghi', 'Gohir.A13G086300' => 'ghi', 'Gohir.D07G052900' => 'ghi', 'Gohir.D11G186600' => 'ghi', 'Gohir.D12G145575' => 'ghi', 'Gohir.D12G145650' => 'ghi', 'Gohir.D12G145725' => 'ghi', 'Gohir.D12G194050' => 'ghi', 'Gohir.D13G091800' => 'ghi', 'Gorai.001G055900' => 'gra', 'Gorai.007G198400' => 'gra', 'Gorai.008G157000' => 'gra', 'Gorai.008G157100' => 'gra', 'Gorai.008G208700' => 'gra', 'Gorai.010G138700' => 'gra', 'GSVIVG01000977001' => 'vvi', 'GSVIVG01007708001' => 'vvi', 'GSVIVG01008587001' => 'vvi', 'GSVIVG01018849001' => 'vvi', 'GSVIVG01032432001' => 'vvi', 'HanXRQChr02g0034131' => 'han', 'HanXRQChr02g0035981' => 'han', 'HanXRQChr02g0035991' => 'han', 'HanXRQChr05g0155611' => 'han', 'HanXRQChr05g0155621' => 'han', 'HanXRQChr08g0236501' => 'han', 'HanXRQChr09g0261321' => 'han', 'HanXRQChr09g0272081' => 'han', 'HanXRQChr10g0310741' => 'han', 'HanXRQChr11g0325591' => 'han', 'HanXRQChr12g0385691' => 'han', 'HanXRQChr13g0387801' => 'han', 'HanXRQChr15g0463011' => 'han', 'Haze_03826' => 'cav', 'Haze_03827' => 'cav', 'Haze_07183' => 'cav', 'Haze_07537' => 'cav', 'Haze_07539' => 'cav', 'Haze_12461' => 'cav', 'Haze_16115' => 'cav', 'Haze_16808' => 'cav', 'Haze_18531' => 'cav', 'Hma1.2p1_0046F.1_g026700' => 'hma', 'Hma1.2p1_0046F.1_g026710' => 'hma', 'Hma1.2p1_0168F.1_g074340' => 'hma', 'Hma1.2p1_0266F.1_g107030' => 'hma', 'Hma1.2p1_0266F.1_g107060' => 'hma', 'Hma1.2p1_0275F.1_g110510' => 'hma', 'Hma1.2p1_0592F.1_g185490' => 'hma', 'Hma1.2p1_0592F.1_g185500' => 'hma', 'Hma1.2p1_0592F.1_g185510' => 'hma', 'Hma1.2p1_0592F.1_g185520' => 'hma', 'Hma1.2p1_0592F.1_g185530' => 'hma', 'Hma1.2p1_0818F.1_g223450' => 'hma', 'HPP92_009708' => 'vpl', 'HPP92_009793' => 'vpl', 'HPP92_009796' => 'vpl', 'HPP92_009797' => 'vpl', 'HPP92_014940' => 'vpl', 'HPP92_014988' => 'vpl', 'Hund02463' => 'sun', 'Hund02760' => 'sun', 'Hund05071' => 'sun', 'Hund10108' => 'sun', 'Hund11204' => 'sun', 'Hund14016' => 'sun', 'Hund16464' => 'sun', 'Lalb_Chr09g0333391' => 'lal', 'Lalb_Chr11g0070461' => 'lal', 'Lalb_Chr12g0201671' => 'lal', 'Lalb_Chr13g0297161' => 'lal', 'Lj1g0002823' => 'lja', 'Lj3C1074T6' => 'lonja', 'Lj4A212T28' => 'lonja', 'Lj4g0005516' => 'lja', 'Lj4g0013705' => 'lja', 'Lj4g0027865' => 'lja', 'Lj5C92G16' => 'lonja', 'Lj5C92T12' => 'lonja', 'Lj7C596T3' => 'lonja', 'Lj9A446G59' => 'lonja', 'Lj9A482G21' => 'lonja', 'Lsat_1_v5_gn_1_28261' => 'lsa', 'Lsat_1_v5_gn_1_28281' => 'lsa', 'Lsat_1_v5_gn_1_32721' => 'lsa', 'Lsat_1_v5_gn_4_151760' => 'lsa', 'Lsat_1_v5_gn_4_2120' => 'lsa', 'Lsat_1_v5_gn_4_75761' => 'lsa', 'Lsat_1_v5_gn_5_10920' => 'lsa', 'Manes.02G099900' => 'mes', 'Manes.11G096200' => 'mes', 'Manes.12G007200' => 'mes', 'Manes.14G048300' => 'mes', 'Manes.17G114700' => 'mes', 'Mapoly0002s0070' => 'mpo', 'Mapoly0029s0099' => 'mpo', 'MBI07_g24742_MAGBIO' => 'mbi', 'MBI10_g27988_MAGBIO' => 'mbi', 'MBI11_g13057_MAGBIO' => 'mbi', 'MD02G1137200' => 'mdo', 'MD06G1137200' => 'mdo', 'MD07G1122300' => 'mdo', 'MD09G1078200' => 'mdo', 'MD13G1123700' => 'mdo', 'MD14G1151900' => 'mdo', 'MD17G1030900' => 'mdo', 'MD17G1068200' => 'mdo', 'MD17G1068600' => 'mdo', 'Medtr3g077540' => 'mtr', 'Medtr4g105530' => 'mtr', 'Medtr8g076580' => 'mtr', 'Medtr8g076590' => 'mtr', 'Medtr8g096410' => 'mtr', 'MELO3C016411.2' => 'cme', 'MELO3C017780.2' => 'cme', 'MELO3C022560.2' => 'cme', 'MELO3C026187.2' => 'cme', 'MELO3C026286.2' => 'cme', 'MELO3C032854.2' => 'cme', 'Migut.H02495' => 'egut', 'Migut.I00561' => 'egut', 'Migut.K01015' => 'egut', 'Migut.K01016' => 'egut', 'Migut.L00743' => 'egut', 'Migut.L00744' => 'egut', 'Migut.L00746' => 'egut', 'Migut.L00798' => 'egut', 'Migut.L00799' => 'egut', 'Migut.N02096' => 'egut', 'MSTRG.11259' => 'ama', 'MSTRG.23142' => 'ama', 'MSTRG.2499' => 'ama', 'Nitab4.5_0000003g0730' => 'nta', 'Nitab4.5_0000137g0020' => 'nta', 'Nitab4.5_0000721g0210' => 'nta', 'Nitab4.5_0000723g0050' => 'nta', 'Nitab4.5_0000913g0070' => 'nta', 'Nitab4.5_0001332g0040' => 'nta', 'Nitab4.5_0001771g0050' => 'nta', 'Nitab4.5_0001918g0050' => 'nta', 'Nitab4.5_0002686g0030' => 'nta', 'Nitab4.5_0003156g0020' => 'nta', 'Nitab4.5_0003383g0040' => 'nta', 'Nitab4.5_0003918g0010' => 'nta', 'Nitab4.5_0006760g0010' => 'nta', 'Nn1g05981' => 'nnu', 'Nn1g06288' => 'nnu', 'Nn3g16371' => 'nnu', 'Nn3g16786' => 'nnu', 'Nn4g22232' => 'nnu', 'Oeu005144.1' => 'oeu', 'Oeu005145.1' => 'oeu', 'Oeu011348.1' => 'oeu', 'Oeu016415.1' => 'oeu', 'Oeu023501.1' => 'oeu', 'Oeu044473.1' => 'oeu', 'Oeu048892.2' => 'oeu', 'Os01g0549200' => 'osa', 'Os02g0469300' => 'osa', 'Os04g0311100' => 'osa', 'Os06g0474900' => 'osa', 'Os10g0181700' => 'osa', 'Os11g0454800' => 'osa', 'Peaxi162Scf00037g00714' => 'pax', 'Peaxi162Scf00084g01217' => 'pax', 'Peaxi162Scf00257g00217' => 'pax', 'Peaxi162Scf00516g00215' => 'pax', 'Peaxi162Scf00689g00123' => 'pax', 'PGR044G2719' => 'pgr', 'PGR083G1360' => 'pgr', 'PGR102G2849' => 'pgr', 'PGR119G2534' => 'pgr', 'PGSC0003DMG400003538' => 'stu', 'PGSC0003DMG400028138' => 'stu', 'PGSC0003DMG400031732' => 'stu', 'PGSC0003DMG400038165' => 'stu', 'Phvul.002G284600' => 'pvu', 'Phvul.003G258200' => 'pvu', 'Phvul.009G176500' => 'pvu', 'Potri.003G167201' => 'ptr', 'Potri.005G118400' => 'ptr', 'Potri.012G089000' => 'ptr', 'Potri.012G102800' => 'ptr', 'Potri.015G079400' => 'ptr', 'Potri.015G100900' => 'ptr', 'Pp3c14_9810' => 'ppa', 'Pp3c15_10450' => 'ppa', 'Pp3c20_19150' => 'ppa', 'Pp3c23_12740' => 'ppa', 'Pp3c23_6310' => 'ppa', 'Pp3c24_3720' => 'ppa', 'Pp3c27_2580' => 'ppa', 'Pp3c9_8990' => 'ppa', 'PRCOL_00002854' => 'pco', 'Prupe.1G221200' => 'ppe', 'Prupe.3G289000' => 'ppe', 'Prupe.5G147000' => 'ppe', 'Prupe.6G157300' => 'ppe', 'Prupe.7G163400' => 'ppe', 'Psat0s2177g0040' => 'psa', 'Psat3g174760' => 'psa', 'Psat3g192160' => 'psa', 'Psat4g058520' => 'psa', 'Psat4g096840' => 'psa', 'Psat7g037320' => 'psa', 'PSO017G1274' => 'pso', 'PSO017G5166' => 'pso', 'PSO063G4558' => 'pso', 'PSO170G4458' => 'pso', 'PSO170G5005' => 'pso', 'PSO210G6156' => 'pso', 'PSO210G6635' => 'pso', 'PSO210G7397' => 'pso', 'PSO210G7700' => 'pso', 'PSO455G0035' => 'pso', 'PSO455G0180' => 'pso', 'PSO478G4515' => 'pso', 'PSO832G1305' => 'pso', 'PSO832G3489' => 'pso', 'QL02p075247' => 'qlo', 'QL03p051148' => 'qlo', 'QL05p010313' => 'qlo', 'QL06p034627' => 'qlo', 'QL10p001889' => 'qlo', 'QL10p010846' => 'qlo', 'RcHm_v2.0_Chr1g0350621' => 'rch', 'RcHm_v2.0_Chr1g0350641' => 'rch', 'RcHm_v2.0_Chr2g0092891' => 'rch', 'RcHm_v2.0_Chr2g0100251' => 'rch', 'RcHm_v2.0_Chr2g0158661' => 'rch', 'RcHm_v2.0_Chr2g0172741' => 'rch', 'RcHm_v2.0_Chr4g0429571' => 'rch', 'RcHm_v2.0_Chr5g0042471' => 'rch', 'RcHm_v2.0_Chr7g0189451' => 'rch', 'Rhsim08G0052000' => 'rsi', 'Rhsim08G0174400' => 'rsi', 'Rhsim08G0193200' => 'rsi', 'Rhsim10G0214800' => 'rsi', 'Rhsim10G0214900' => 'rsi', 'Rhsim10G0215000' => 'rsi', 'Rhsim12G0022900' => 'rsi', 'Rhsim12G0177500' => 'rsi', 'Rhsim12G0177700' => 'rsi', 'Sabra03G0122600' => 'sbr', 'Sabra05G0097400' => 'sbr', 'Sabra12G0064100' => 'sbr', 'Sabra15G0121300' => 'sbr', 'SalBow2G0642' => 'sbo', 'SalBow5G2667' => 'sbo', 'SalBow5G4873' => 'sbo', 'SalBow8G2395' => 'sbo', 'Sc03g0003290' => 'sci', 'Sc10g0010130' => 'sci', 'Sc22g0003650' => 'sci', 'Sed0001603' => 'sed', 'Sed0004259' => 'sed', 'Sed0006789' => 'sed', 'Sed0011838' => 'sed', 'Sed0012964' => 'sed', 'Sed0016383' => 'sed', 'Sed0019010' => 'sed', 'Sed0020188' => 'sed', 'SEGI_04702' => 'sgi', 'SEGI_17231' => 'sgi', 'SEGI_18877' => 'sgi', 'SEGI_25196' => 'sgi', 'SEGI_25515' => 'sgi', 'SEGI_28445' => 'sgi', 'SEGI_37452' => 'sgi', 'SGA_v2.0_scaffold188G40336' => 'sas', 'SGA_v2.0_scaffold228G43247' => 'sas', 'SGA_v2.0_scaffold280G46853' => 'sas', 'SGA_v2.0_scaffold34G13808' => 'sas', 'SGA_v2.0_scaffold40G15576' => 'sas', 'SGA_v2.0_scaffold611G53188' => 'sas', 'SGA_v2.0_scaffold78G25461' => 'sas', 'SGA_v2.0_scaffold90G27888' => 'sas', 'SHI08601' => 'shi', 'SHI08606' => 'shi', 'SHI17117' => 'shi', 'SHI17119' => 'shi', 'SMO118G0201' => 'smo', 'SMO169G0247' => 'smo', 'SMO176G0006' => 'smo', 'SMO176G0015' => 'smo', 'SMO202G0006' => 'smo', 'SMO240G0050' => 'smo', 'SMO286G0009' => 'smo', 'SMO338G0033' => 'smo', 'SMO356G0533' => 'smo', 'SMO364G0382' => 'smo', 'SMO367G0166' => 'smo', 'SMO367G1098' => 'smo', 'Solyc01g009920.3' => 'sly', 'Solyc01g099300.3' => 'sly', 'Solyc02g084700.3' => 'sly', 'Solyc03g097520.3' => 'sly', 'Solyc06g071580.3' => 'sly', 'Solyc10g081760.3' => 'sly', 'Sopen01g005480' => 'spe', 'Sopen01g042850' => 'spe', 'Sopen02g029370' => 'spe', 'Sopen03g028280' => 'spe', 'Sopen06g027870' => 'spe', 'Sopen10g032270' => 'spe', 'Sp5g18180' => 'spa', 'Sp6g12880' => 'spa', 'Sp6g30850' => 'spa', 'Sp7g22960' => 'spa', 'Sp7g34010' => 'spa', 'SpUn1326_0010' => 'spa', 'TAR371G0242' => 'tar', 'TAR622G0638' => 'tar', 'TAR628G1548' => 'tar', 'TAR629G1079' => 'tar', 'TAR629G3413' => 'tar', 'THA.LOC104804249' => 'tha', 'THA.LOC104808315' => 'tha', 'THA.LOC104809238' => 'tha', 'THA.LOC104825484' => 'tha', 'Thecc.01G025500' => 'tca', 'Thecc.03G015800' => 'tca', 'Thecc.03G018000' => 'tca', 'Thecc.03G134800' => 'tca', 'Thecc.04G014700' => 'tca', 'Thhalv10006991m.g' => 'esa', 'Thhalv10012707m.g' => 'esa', 'Thhalv10015739m.g' => 'esa', 'Thhalv10024553m.g' => 'esa', 'Thhalv10024673m.g' => 'esa', 'Thhalv10029187m.g' => 'esa', 'TPR.G12971' => 'tpr', 'TPR.G29396' => 'tpr', 'TPR.G33376' => 'tpr', 'TPR.G35508' => 'tpr', 'TPR.G35516' => 'tpr', 'TPR.G37317' => 'tpr', 'TPR.G37389' => 'tpr', 'TPR.G37523' => 'tpr', 'TPR.G559' => 'tpr', 'TWI14G0070' => 'twi', 'TWI14G0729' => 'twi', 'TWI18G0596' => 'twi', 'TWI39G0780' => 'twi', 'TWI39G0850' => 'twi', 'TWI73G1052' => 'twi', 'unitig_52.g17485' => 'ugi', 'unitig_61.g26355' => 'ugi', 'vmacro01040' => 'vma', 'vmacro16731' => 'vma', 'vmacro18270' => 'vma', 'vmacro19142' => 'vma', 'vmacro19407' => 'vma', 'vmacro19408' => 'vma', 'vmacro21899' => 'vma', 'vmacro21900' => 'vma', 'vmacro21901' => 'vma', 'VMungo0251G0490' => 'vmu', 'VMungo0251G1748' => 'vmu', 'VMungo1309G0421' => 'vmu', 'Zm00001eb086500' => 'zma', 'Zm00001eb150680' => 'zma', 'Zm00001eb162330' => 'zma', 'Zm00001eb203130' => 'zma', 'Zm00001eb369480' => 'zma', 'Zm00001eb382340' => 'zma', 'Zm00001eb416360' => 'zma' ) $gf_id = 'HOM05D000902' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000902' ) $data_identifier = 'HOM05D000902' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 13, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 10, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 6, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 9, 'hma' => (int) 12, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 4, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 6, 'ppa' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 6, 'rch' => (int) 9, 'rsi' => (int) 9, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 12, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 3, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416360' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000902', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '663', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02470' => 'bna', 'A01p16260' => 'bna', 'A02p01680' => 'bna', 'A03p16600' => 'bna', 'A03p55660' => 'bna', 'A03p64160' => 'bna', 'A03p64170' => 'bna', 'A08p31900' => 'bna', 'A09p59530' => 'bna', 'A10p08230' => 'bna', 'A10p25090' => 'bna', 'Aa31LG3G7100' => 'aar', 'Aa31LG3G7110' => 'aar', 'Aa31LG6G13160' => 'aar', 'Aa31LG7G10770' => 'aar', 'Aa31LG7G3830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2723' => 'aag', 'Actinidia08045' => 'ach', 'Actinidia08888' => 'ach', 'Actinidia18333' => 'ach', 'Actinidia19334' => 'ach', 'Actinidia25552' => 'ach', 'Actinidia26089' => 'ach', 'Actinidia30615' => 'ach', 'Actinidia30616' => 'ach', 'Actinidia33083' => 'ach', 'Actinidia35762' => 'ach', 'Ah.02g110620' => 'amhyb', 'Ah.11g046390' => 'amhyb', 'AL1G31670' => 'aly', 'AL6G23730' => 'aly', 'AL7G14740' => 'aly', 'AL7G14750' => 'aly', 'AL7G14760' => 'aly', 'AL7G28220' => 'aly', 'AL8G24940' => 'aly', 'Aqoxy3G01665' => 'aox', 'Aqoxy3G02853' => 'aox', 'Aqoxy5G01513' => 'aox', 'Aqoxy5G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8SKA4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ75LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKDA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0LJZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7REX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZP4YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWX7I5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2QKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS0L9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPCD8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q161UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC7XCF' => 'arhy', 'AT1G19100' => 'ath', 'AT4G24970' => 'ath', 'AT4G36270' => 'ath', 'AT4G36280' => 'ath', 'AT4G36290' => 'ath', 'AT5G13130' => 'ath', 'AT5G50780' => 'ath', 'ATR0582G266' => 'atr', 'ATR0661G195' => 'atr', 'ATR1152G031' => 'atr', 'Atru.chr11.2382' => 'acertr', 'Atru.chr12.2337' => 'acertr', 'Atru.chr3.744' => 'acertr', 'Atru.chr6.1870' => 'acertr', 'Atru.chr9.2515' => 'acertr', 'AUR62004120' => 'cqu', 'AUR62005667' => 'cqu', 'AUR62007634' => 'cqu', 'AUR62008186' => 'cqu', 'AUR62008187' => 'cqu', 'AUR62008188' => 'cqu', 'AUR62027954' => 'cqu', 'AUR62028766' => 'cqu', 'AUR62028767' => 'cqu', 'AUR62028768' => 'cqu', 'AUR62028886' => 'cqu', 'AUR62029563' => 'cqu', 'AUR62038832' => 'cqu', 'BcaB01g04149' => 'bca', 'BcaB03g12940' => 'bca', 'BcaB03g13090' => 'bca', 'BcaB03g14466' => 'bca', 'BcaB05g24035' => 'bca', 'BcaC01g06050' => 'bca', 'BcaC04g19148' => 'bca', 'BcaC04g20761' => 'bca', 'BcaC06g32845' => 'bca', 'BcaC07g41274' => 'bca', 'BcaC09g50827' => 'bca', 'BcaNung00741' => 'bca', 'BcaNung00742' => 'bca', 'BcaNung01859' => 'bca', 'BcaNung03985' => 'bca', 'BcaNung03989' => 'bca', 'BcaNung05661' => 'bca', 'BolC1t00257H' => 'bol', 'BolC1t01956H' => 'bol', 'BolC2t06534H' => 'bol', 'BolC3t14334H' => 'bol', 'BolC5t30451H' => 'bol', 'BolC7t45880H' => 'bol', 'BolC7t46586H' => 'bol', 'BolC8t49301H' => 'bol', 'BolC8t51837H' => 'bol', 'BolC9t56822H' => 'bol', 'BolC9t59235H' => 'bol', 'BraA01t00234Z' => 'bra', 'BraA01t01563Z' => 'bra', 'BraA02t05147Z' => 'bra', 'BraA03t10947Z' => 'bra', 'BraA03t14633Z' => 'bra', 'BraA08t35112Z' => 'bra', 'BraA09t41330Z' => 'bra', 'BraA10t44570Z' => 'bra', 'C01p02670' => 'bna', 'C01p20260' => 'bna', 'C02p05890' => 'bna', 'C03p19530' => 'bna', 'C05p17470' => 'bna', 'C07p53900' => 'bna', 'C07p61630' => 'bna', 'C08p16800' => 'bna', 'C08p42810' => 'bna', 'C09p39480' => 'bna', 'C09p63980' => 'bna', 'CAN.G1001.7' => 'can', 'CAN.G1034.55' => 'can', 'CAN.G143.7' => 'can', 'CAN.G3340.1' => 'can', 'CAN.G358.19' => 'can', 'CAN.G373.2' => 'can', 'CAN.G674.16' => 'can', 'CAN.G674.17' => 'can', 'CAN.G674.18' => 'can', 'CAN.G732.2' => 'can', 'CAN.G732.3' => 'can', 'CAN.G993.39' => 'can', 'CANSAT01G2052' => 'cansat', 'CANSAT80G0070' => 'cansat', 'CANSAT80G0483' => 'cansat', 'CANSAT80G0625' => 'cansat', 'CARHR019690' => 'chi', 'CARHR080280' => 'chi', 'CARHR152750' => 'chi', 'CARHR152760' => 'chi', 'CARHR152770' => 'chi', 'CARHR200340' => 'chi', 'CARHR232370' => 'chi', 'CARHR244670' => 'chi', 'CARHR244680' => 'chi', 'CARHR257520' => 'chi', 'Carub.0001s1872' => 'cru', 'Carub.0006s1130' => 'cru', 'Carub.0007s0396' => 'cru', 'Carub.0007s0397' => 'cru', 'Carub.0007s1608' => 'cru', 'Carub.0008s1068' => 'cru', 'Carub.0008s1077' => 'cru', 'Ca_16158_v3' => 'car', 'Ca_17571_v3' => 'car', 'Ca_21936_v3' => 'car', 'Ca_22350_v3' => 'car', 'CBR_g22445' => 'cbr', 'CBR_g26290' => 'cbr', 'Cc04_g09610' => 'ccan', 'Cc04_g12280' => 'ccan', 'Cc07_g10230' => 'ccan', 'CDE02G0093' => 'cde', 'CDE02G0701' => 'cde', 'CDE04G1050' => 'cde', 'CDE05G1833' => 'cde', 'CDE05G3058' => 'cde', 'CDE05G3380' => 'cde', 'CDE06G0536' => 'cde', 'Cfa006923' => 'cfa', 'Cfa009402' => 'cfa', 'Cfa018751' => 'cfa', 'Cfa019164' => 'cfa', 'Cfa022935' => 'cfa', 'Ciclev10019081m.g' => 'ccl', 'Ciclev10025076m.g' => 'ccl', 'Ciclev10030712m.g' => 'ccl', 'Ciclev10033760m.g' => 'ccl', 'CiPaw.05G105600' => 'cil', 'CiPaw.08G136700' => 'cil', 'CiPaw.11G003900' => 'cil', 'CiPaw.11G023700' => 'cil', 'CiPaw.12G003700' => 'cil', 'ClCG06G017100' => 'cla', 'ClCG06G018110' => 'cla', 'ClCG07G008800' => 'cla', 'ClCG07G015330' => 'cla', 'COL.COLO4_13698' => 'col', 'COL.COLO4_16659' => 'col', 'COL.COLO4_21986' => 'col', 'COL.COLO4_24049' => 'col', 'COL.COLO4_29061' => 'col', 'COL.COLO4_29075' => 'col', 'COL.COLO4_30094' => 'col', 'Cpa.g.c33689' => 'cpa', 'Cpa.g.sc108.39' => 'cpa', 'Cpa.g.sc108.41' => 'cpa', 'Cpa.g.sc1163.1' => 'cpa', 'Cpa.g.sc4.155' => 'cpa', 'Cpa.g.sc6.194' => 'cpa', 'CsaV3_1G000340' => 'csa', 'CsaV3_1G001400' => 'csa', 'CsaV3_4G002220' => 'csa', 'CsaV3_4G005370' => 'csa', 'CSS0007487' => 'camsi', 'CSS0008066' => 'camsi', 'CSS0009120' => 'camsi', 'CSS0015512' => 'camsi', 'CSS0022409' => 'camsi', 'CSS0025358' => 'camsi', 'CSS0044547' => 'camsi', 'DCAR_013057' => 'dca', 'DCAR_015058' => 'dca', 'DCAR_016027' => 'dca', 'DCAR_017327' => 'dca', 'DCAR_020743' => 'dca', 'DCAR_026157' => 'dca', 'DCAR_032339' => 'dca', 'DCAR_032340' => 'dca', 'Dinv11200' => 'din', 'Dinv11201' => 'din', 'Dinv20631' => 'din', 'Dinv23182' => 'din', 'Dinv33466' => 'din', 'Dinv33583' => 'din', 'Dinv38565' => 'din', 'Duzib068G0200' => 'dzi', 'Duzib147G0132' => 'dzi', 'Duzib147G0635' => 'dzi', 'Duzib205G1670' => 'dzi', 'Duzib251G0606' => 'dzi', 'ECA232G3336' => 'eca', 'ECA232G3763' => 'eca', 'ECA232G4845' => 'eca', 'ECA234G1607' => 'eca', 'ECA246G0932' => 'eca', 'ECA247G0781' => 'eca', 'ECA247G1932' => 'eca', 'ECA247G2079' => 'eca', 'ECA247G3338' => 'eca', 'ECA247G4115' => 'eca', 'EL10Ac3g06552' => 'bvu', 'EL10Ac5g10721' => 'bvu', 'EL10Ac5g10722' => 'bvu', 'EL10Ac5g10723' => 'bvu', 'EL10Ac5g11361' => 'bvu', 'EL10Ac6g13553' => 'bvu', 'EL10As8g23872' => 'bvu', 'Eucgr.B00250' => 'egr', 'Eucgr.B00251' => 'egr', 'Eucgr.B03533' => 'egr', 'Eucgr.I02381' => 'egr', 'Eucgr.K02700' => 'egr', 'FAN02G0174' => 'fan', 'FAN02G3146' => 'fan', 'FAN04G1672' => 'fan', 'FAN04G2273' => 'fan', 'FAN05G2791' => 'fan', 'FAN05G4035' => 'fan', 'FAN07G0834' => 'fan', 'FAN08G1198' => 'fan', 'FAN09G4182' => 'fan', 'FAN12G0496' => 'fan', 'FAN13G1027' => 'fan', 'FAN13G2951' => 'fan', 'FAN14G0705' => 'fan', 'FAN14G0720' => 'fan', 'FAN17G0201' => 'fan', 'FAN17G2665' => 'fan', 'FAN18G1456' => 'fan', 'FAN18G1525' => 'fan', 'FAN18G3500' => 'fan', 'FAN28G2670' => 'fan', 'FvH4_1g12391' => 'fve', 'FvH4_4g23220' => 'fve', 'FvH4_5g08810' => 'fve', 'FvH4_5g28960' => 'fve', 'FvH4_6g42820' => 'fve', 'FvH4_6g51110' => 'fve', 'Glyma.02G051802' => 'gma', 'Glyma.04G185300' => 'gma', 'Glyma.05G202900' => 'gma', 'Glyma.08G010300' => 'gma', 'Glyma.16G131900' => 'gma', 'Glyma.17G087900' => 'gma', 'Gohir.A07G048600' => 'ghi', 'Gohir.A11G179000' => 'ghi', 'Gohir.A12G140900' => 'ghi', 'Gohir.A12G140950' => 'ghi', 'Gohir.A12G191700' => 'ghi', 'Gohir.A13G086300' => 'ghi', 'Gohir.D07G052900' => 'ghi', 'Gohir.D11G186600' => 'ghi', 'Gohir.D12G145575' => 'ghi', 'Gohir.D12G145650' => 'ghi', 'Gohir.D12G145725' => 'ghi', 'Gohir.D12G194050' => 'ghi', 'Gohir.D13G091800' => 'ghi', 'Gorai.001G055900' => 'gra', 'Gorai.007G198400' => 'gra', 'Gorai.008G157000' => 'gra', 'Gorai.008G157100' => 'gra', 'Gorai.008G208700' => 'gra', 'Gorai.010G138700' => 'gra', 'GSVIVG01000977001' => 'vvi', 'GSVIVG01007708001' => 'vvi', 'GSVIVG01008587001' => 'vvi', 'GSVIVG01018849001' => 'vvi', 'GSVIVG01032432001' => 'vvi', 'HanXRQChr02g0034131' => 'han', 'HanXRQChr02g0035981' => 'han', 'HanXRQChr02g0035991' => 'han', 'HanXRQChr05g0155611' => 'han', 'HanXRQChr05g0155621' => 'han', 'HanXRQChr08g0236501' => 'han', 'HanXRQChr09g0261321' => 'han', 'HanXRQChr09g0272081' => 'han', 'HanXRQChr10g0310741' => 'han', 'HanXRQChr11g0325591' => 'han', 'HanXRQChr12g0385691' => 'han', 'HanXRQChr13g0387801' => 'han', 'HanXRQChr15g0463011' => 'han', 'Haze_03826' => 'cav', 'Haze_03827' => 'cav', 'Haze_07183' => 'cav', 'Haze_07537' => 'cav', 'Haze_07539' => 'cav', 'Haze_12461' => 'cav', 'Haze_16115' => 'cav', 'Haze_16808' => 'cav', 'Haze_18531' => 'cav', 'Hma1.2p1_0046F.1_g026700' => 'hma', 'Hma1.2p1_0046F.1_g026710' => 'hma', 'Hma1.2p1_0168F.1_g074340' => 'hma', 'Hma1.2p1_0266F.1_g107030' => 'hma', 'Hma1.2p1_0266F.1_g107060' => 'hma', 'Hma1.2p1_0275F.1_g110510' => 'hma', 'Hma1.2p1_0592F.1_g185490' => 'hma', 'Hma1.2p1_0592F.1_g185500' => 'hma', 'Hma1.2p1_0592F.1_g185510' => 'hma', 'Hma1.2p1_0592F.1_g185520' => 'hma', 'Hma1.2p1_0592F.1_g185530' => 'hma', 'Hma1.2p1_0818F.1_g223450' => 'hma', 'HPP92_009708' => 'vpl', 'HPP92_009793' => 'vpl', 'HPP92_009796' => 'vpl', 'HPP92_009797' => 'vpl', 'HPP92_014940' => 'vpl', 'HPP92_014988' => 'vpl', 'Hund02463' => 'sun', 'Hund02760' => 'sun', 'Hund05071' => 'sun', 'Hund10108' => 'sun', 'Hund11204' => 'sun', 'Hund14016' => 'sun', 'Hund16464' => 'sun', 'Lalb_Chr09g0333391' => 'lal', 'Lalb_Chr11g0070461' => 'lal', 'Lalb_Chr12g0201671' => 'lal', 'Lalb_Chr13g0297161' => 'lal', 'Lj1g0002823' => 'lja', 'Lj3C1074T6' => 'lonja', 'Lj4A212T28' => 'lonja', 'Lj4g0005516' => 'lja', 'Lj4g0013705' => 'lja', 'Lj4g0027865' => 'lja', 'Lj5C92G16' => 'lonja', 'Lj5C92T12' => 'lonja', 'Lj7C596T3' => 'lonja', 'Lj9A446G59' => 'lonja', 'Lj9A482G21' => 'lonja', 'Lsat_1_v5_gn_1_28261' => 'lsa', 'Lsat_1_v5_gn_1_28281' => 'lsa', 'Lsat_1_v5_gn_1_32721' => 'lsa', 'Lsat_1_v5_gn_4_151760' => 'lsa', 'Lsat_1_v5_gn_4_2120' => 'lsa', 'Lsat_1_v5_gn_4_75761' => 'lsa', 'Lsat_1_v5_gn_5_10920' => 'lsa', 'Manes.02G099900' => 'mes', 'Manes.11G096200' => 'mes', 'Manes.12G007200' => 'mes', 'Manes.14G048300' => 'mes', 'Manes.17G114700' => 'mes', 'Mapoly0002s0070' => 'mpo', 'Mapoly0029s0099' => 'mpo', 'MBI07_g24742_MAGBIO' => 'mbi', 'MBI10_g27988_MAGBIO' => 'mbi', 'MBI11_g13057_MAGBIO' => 'mbi', 'MD02G1137200' => 'mdo', 'MD06G1137200' => 'mdo', 'MD07G1122300' => 'mdo', 'MD09G1078200' => 'mdo', 'MD13G1123700' => 'mdo', 'MD14G1151900' => 'mdo', 'MD17G1030900' => 'mdo', 'MD17G1068200' => 'mdo', 'MD17G1068600' => 'mdo', 'Medtr3g077540' => 'mtr', 'Medtr4g105530' => 'mtr', 'Medtr8g076580' => 'mtr', 'Medtr8g076590' => 'mtr', 'Medtr8g096410' => 'mtr', 'MELO3C016411.2' => 'cme', 'MELO3C017780.2' => 'cme', 'MELO3C022560.2' => 'cme', 'MELO3C026187.2' => 'cme', 'MELO3C026286.2' => 'cme', 'MELO3C032854.2' => 'cme', 'Migut.H02495' => 'egut', 'Migut.I00561' => 'egut', 'Migut.K01015' => 'egut', 'Migut.K01016' => 'egut', 'Migut.L00743' => 'egut', 'Migut.L00744' => 'egut', 'Migut.L00746' => 'egut', 'Migut.L00798' => 'egut', 'Migut.L00799' => 'egut', 'Migut.N02096' => 'egut', 'MSTRG.11259' => 'ama', 'MSTRG.23142' => 'ama', 'MSTRG.2499' => 'ama', 'Nitab4.5_0000003g0730' => 'nta', 'Nitab4.5_0000137g0020' => 'nta', 'Nitab4.5_0000721g0210' => 'nta', 'Nitab4.5_0000723g0050' => 'nta', 'Nitab4.5_0000913g0070' => 'nta', 'Nitab4.5_0001332g0040' => 'nta', 'Nitab4.5_0001771g0050' => 'nta', 'Nitab4.5_0001918g0050' => 'nta', 'Nitab4.5_0002686g0030' => 'nta', 'Nitab4.5_0003156g0020' => 'nta', 'Nitab4.5_0003383g0040' => 'nta', 'Nitab4.5_0003918g0010' => 'nta', 'Nitab4.5_0006760g0010' => 'nta', 'Nn1g05981' => 'nnu', 'Nn1g06288' => 'nnu', 'Nn3g16371' => 'nnu', 'Nn3g16786' => 'nnu', 'Nn4g22232' => 'nnu', 'Oeu005144.1' => 'oeu', 'Oeu005145.1' => 'oeu', 'Oeu011348.1' => 'oeu', 'Oeu016415.1' => 'oeu', 'Oeu023501.1' => 'oeu', 'Oeu044473.1' => 'oeu', 'Oeu048892.2' => 'oeu', 'Os01g0549200' => 'osa', 'Os02g0469300' => 'osa', 'Os04g0311100' => 'osa', 'Os06g0474900' => 'osa', 'Os10g0181700' => 'osa', 'Os11g0454800' => 'osa', 'Peaxi162Scf00037g00714' => 'pax', 'Peaxi162Scf00084g01217' => 'pax', 'Peaxi162Scf00257g00217' => 'pax', 'Peaxi162Scf00516g00215' => 'pax', 'Peaxi162Scf00689g00123' => 'pax', 'PGR044G2719' => 'pgr', 'PGR083G1360' => 'pgr', 'PGR102G2849' => 'pgr', 'PGR119G2534' => 'pgr', 'PGSC0003DMG400003538' => 'stu', 'PGSC0003DMG400028138' => 'stu', 'PGSC0003DMG400031732' => 'stu', 'PGSC0003DMG400038165' => 'stu', 'Phvul.002G284600' => 'pvu', 'Phvul.003G258200' => 'pvu', 'Phvul.009G176500' => 'pvu', 'Potri.003G167201' => 'ptr', 'Potri.005G118400' => 'ptr', 'Potri.012G089000' => 'ptr', 'Potri.012G102800' => 'ptr', 'Potri.015G079400' => 'ptr', 'Potri.015G100900' => 'ptr', 'Pp3c14_9810' => 'ppa', 'Pp3c15_10450' => 'ppa', 'Pp3c20_19150' => 'ppa', 'Pp3c23_12740' => 'ppa', 'Pp3c23_6310' => 'ppa', 'Pp3c24_3720' => 'ppa', 'Pp3c27_2580' => 'ppa', 'Pp3c9_8990' => 'ppa', 'PRCOL_00002854' => 'pco', 'Prupe.1G221200' => 'ppe', 'Prupe.3G289000' => 'ppe', 'Prupe.5G147000' => 'ppe', 'Prupe.6G157300' => 'ppe', 'Prupe.7G163400' => 'ppe', 'Psat0s2177g0040' => 'psa', 'Psat3g174760' => 'psa', 'Psat3g192160' => 'psa', 'Psat4g058520' => 'psa', 'Psat4g096840' => 'psa', 'Psat7g037320' => 'psa', 'PSO017G1274' => 'pso', 'PSO017G5166' => 'pso', 'PSO063G4558' => 'pso', 'PSO170G4458' => 'pso', 'PSO170G5005' => 'pso', 'PSO210G6156' => 'pso', 'PSO210G6635' => 'pso', 'PSO210G7397' => 'pso', 'PSO210G7700' => 'pso', 'PSO455G0035' => 'pso', 'PSO455G0180' => 'pso', 'PSO478G4515' => 'pso', 'PSO832G1305' => 'pso', 'PSO832G3489' => 'pso', 'QL02p075247' => 'qlo', 'QL03p051148' => 'qlo', 'QL05p010313' => 'qlo', 'QL06p034627' => 'qlo', 'QL10p001889' => 'qlo', 'QL10p010846' => 'qlo', 'RcHm_v2.0_Chr1g0350621' => 'rch', 'RcHm_v2.0_Chr1g0350641' => 'rch', 'RcHm_v2.0_Chr2g0092891' => 'rch', 'RcHm_v2.0_Chr2g0100251' => 'rch', 'RcHm_v2.0_Chr2g0158661' => 'rch', 'RcHm_v2.0_Chr2g0172741' => 'rch', 'RcHm_v2.0_Chr4g0429571' => 'rch', 'RcHm_v2.0_Chr5g0042471' => 'rch', 'RcHm_v2.0_Chr7g0189451' => 'rch', 'Rhsim08G0052000' => 'rsi', 'Rhsim08G0174400' => 'rsi', 'Rhsim08G0193200' => 'rsi', 'Rhsim10G0214800' => 'rsi', 'Rhsim10G0214900' => 'rsi', 'Rhsim10G0215000' => 'rsi', 'Rhsim12G0022900' => 'rsi', 'Rhsim12G0177500' => 'rsi', 'Rhsim12G0177700' => 'rsi', 'Sabra03G0122600' => 'sbr', 'Sabra05G0097400' => 'sbr', 'Sabra12G0064100' => 'sbr', 'Sabra15G0121300' => 'sbr', 'SalBow2G0642' => 'sbo', 'SalBow5G2667' => 'sbo', 'SalBow5G4873' => 'sbo', 'SalBow8G2395' => 'sbo', 'Sc03g0003290' => 'sci', 'Sc10g0010130' => 'sci', 'Sc22g0003650' => 'sci', 'Sed0001603' => 'sed', 'Sed0004259' => 'sed', 'Sed0006789' => 'sed', 'Sed0011838' => 'sed', 'Sed0012964' => 'sed', 'Sed0016383' => 'sed', 'Sed0019010' => 'sed', 'Sed0020188' => 'sed', 'SEGI_04702' => 'sgi', 'SEGI_17231' => 'sgi', 'SEGI_18877' => 'sgi', 'SEGI_25196' => 'sgi', 'SEGI_25515' => 'sgi', 'SEGI_28445' => 'sgi', 'SEGI_37452' => 'sgi', 'SGA_v2.0_scaffold188G40336' => 'sas', 'SGA_v2.0_scaffold228G43247' => 'sas', 'SGA_v2.0_scaffold280G46853' => 'sas', 'SGA_v2.0_scaffold34G13808' => 'sas', 'SGA_v2.0_scaffold40G15576' => 'sas', 'SGA_v2.0_scaffold611G53188' => 'sas', 'SGA_v2.0_scaffold78G25461' => 'sas', 'SGA_v2.0_scaffold90G27888' => 'sas', 'SHI08601' => 'shi', 'SHI08606' => 'shi', 'SHI17117' => 'shi', 'SHI17119' => 'shi', 'SMO118G0201' => 'smo', 'SMO169G0247' => 'smo', 'SMO176G0006' => 'smo', 'SMO176G0015' => 'smo', 'SMO202G0006' => 'smo', 'SMO240G0050' => 'smo', 'SMO286G0009' => 'smo', 'SMO338G0033' => 'smo', 'SMO356G0533' => 'smo', 'SMO364G0382' => 'smo', 'SMO367G0166' => 'smo', 'SMO367G1098' => 'smo', 'Solyc01g009920.3' => 'sly', 'Solyc01g099300.3' => 'sly', 'Solyc02g084700.3' => 'sly', 'Solyc03g097520.3' => 'sly', 'Solyc06g071580.3' => 'sly', 'Solyc10g081760.3' => 'sly', 'Sopen01g005480' => 'spe', 'Sopen01g042850' => 'spe', 'Sopen02g029370' => 'spe', 'Sopen03g028280' => 'spe', 'Sopen06g027870' => 'spe', 'Sopen10g032270' => 'spe', 'Sp5g18180' => 'spa', 'Sp6g12880' => 'spa', 'Sp6g30850' => 'spa', 'Sp7g22960' => 'spa', 'Sp7g34010' => 'spa', 'SpUn1326_0010' => 'spa', 'TAR371G0242' => 'tar', 'TAR622G0638' => 'tar', 'TAR628G1548' => 'tar', 'TAR629G1079' => 'tar', 'TAR629G3413' => 'tar', 'THA.LOC104804249' => 'tha', 'THA.LOC104808315' => 'tha', 'THA.LOC104809238' => 'tha', 'THA.LOC104825484' => 'tha', 'Thecc.01G025500' => 'tca', 'Thecc.03G015800' => 'tca', 'Thecc.03G018000' => 'tca', 'Thecc.03G134800' => 'tca', 'Thecc.04G014700' => 'tca', 'Thhalv10006991m.g' => 'esa', 'Thhalv10012707m.g' => 'esa', 'Thhalv10015739m.g' => 'esa', 'Thhalv10024553m.g' => 'esa', 'Thhalv10024673m.g' => 'esa', 'Thhalv10029187m.g' => 'esa', 'TPR.G12971' => 'tpr', 'TPR.G29396' => 'tpr', 'TPR.G33376' => 'tpr', 'TPR.G35508' => 'tpr', 'TPR.G35516' => 'tpr', 'TPR.G37317' => 'tpr', 'TPR.G37389' => 'tpr', 'TPR.G37523' => 'tpr', 'TPR.G559' => 'tpr', 'TWI14G0070' => 'twi', 'TWI14G0729' => 'twi', 'TWI18G0596' => 'twi', 'TWI39G0780' => 'twi', 'TWI39G0850' => 'twi', 'TWI73G1052' => 'twi', 'unitig_52.g17485' => 'ugi', 'unitig_61.g26355' => 'ugi', 'vmacro01040' => 'vma', 'vmacro16731' => 'vma', 'vmacro18270' => 'vma', 'vmacro19142' => 'vma', 'vmacro19407' => 'vma', 'vmacro19408' => 'vma', 'vmacro21899' => 'vma', 'vmacro21900' => 'vma', 'vmacro21901' => 'vma', 'VMungo0251G0490' => 'vmu', 'VMungo0251G1748' => 'vmu', 'VMungo1309G0421' => 'vmu', 'Zm00001eb086500' => 'zma', 'Zm00001eb150680' => 'zma', 'Zm00001eb162330' => 'zma', 'Zm00001eb203130' => 'zma', 'Zm00001eb369480' => 'zma', 'Zm00001eb382340' => 'zma', 'Zm00001eb416360' => 'zma' ), 'gf_id' => 'HOM05D000902', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000902' ), 'data_identifier' => 'HOM05D000902', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000902', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '663', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02470' => 'bna', 'A01p16260' => 'bna', 'A02p01680' => 'bna', 'A03p16600' => 'bna', 'A03p55660' => 'bna', 'A03p64160' => 'bna', 'A03p64170' => 'bna', 'A08p31900' => 'bna', 'A09p59530' => 'bna', 'A10p08230' => 'bna', 'A10p25090' => 'bna', 'Aa31LG3G7100' => 'aar', 'Aa31LG3G7110' => 'aar', 'Aa31LG6G13160' => 'aar', 'Aa31LG7G10770' => 'aar', 'Aa31LG7G3830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2723' => 'aag', 'Actinidia08045' => 'ach', 'Actinidia08888' => 'ach', 'Actinidia18333' => 'ach', 'Actinidia19334' => 'ach', 'Actinidia25552' => 'ach', 'Actinidia26089' => 'ach', 'Actinidia30615' => 'ach', 'Actinidia30616' => 'ach', 'Actinidia33083' => 'ach', 'Actinidia35762' => 'ach', 'Ah.02g110620' => 'amhyb', 'Ah.11g046390' => 'amhyb', 'AL1G31670' => 'aly', 'AL6G23730' => 'aly', 'AL7G14740' => 'aly', 'AL7G14750' => 'aly', 'AL7G14760' => 'aly', 'AL7G28220' => 'aly', 'AL8G24940' => 'aly', 'Aqoxy3G01665' => 'aox', 'Aqoxy3G02853' => 'aox', 'Aqoxy5G01513' => 'aox', 'Aqoxy5G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8SKA4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ75LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKDA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0LJZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7REX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZP4YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWX7I5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2QKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS0L9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPCD8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q161UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC7XCF' => 'arhy', 'AT1G19100' => 'ath', 'AT4G24970' => 'ath', 'AT4G36270' => 'ath', 'AT4G36280' => 'ath', 'AT4G36290' => 'ath', 'AT5G13130' => 'ath', 'AT5G50780' => 'ath', 'ATR0582G266' => 'atr', 'ATR0661G195' => 'atr', 'ATR1152G031' => 'atr', 'Atru.chr11.2382' => 'acertr', 'Atru.chr12.2337' => 'acertr', 'Atru.chr3.744' => 'acertr', 'Atru.chr6.1870' => 'acertr', 'Atru.chr9.2515' => 'acertr', 'AUR62004120' => 'cqu', 'AUR62005667' => 'cqu', 'AUR62007634' => 'cqu', 'AUR62008186' => 'cqu', 'AUR62008187' => 'cqu', 'AUR62008188' => 'cqu', 'AUR62027954' => 'cqu', 'AUR62028766' => 'cqu', 'AUR62028767' => 'cqu', 'AUR62028768' => 'cqu', 'AUR62028886' => 'cqu', 'AUR62029563' => 'cqu', 'AUR62038832' => 'cqu', 'BcaB01g04149' => 'bca', 'BcaB03g12940' => 'bca', 'BcaB03g13090' => 'bca', 'BcaB03g14466' => 'bca', 'BcaB05g24035' => 'bca', 'BcaC01g06050' => 'bca', 'BcaC04g19148' => 'bca', 'BcaC04g20761' => 'bca', 'BcaC06g32845' => 'bca', 'BcaC07g41274' => 'bca', 'BcaC09g50827' => 'bca', 'BcaNung00741' => 'bca', 'BcaNung00742' => 'bca', 'BcaNung01859' => 'bca', 'BcaNung03985' => 'bca', 'BcaNung03989' => 'bca', 'BcaNung05661' => 'bca', 'BolC1t00257H' => 'bol', 'BolC1t01956H' => 'bol', 'BolC2t06534H' => 'bol', 'BolC3t14334H' => 'bol', 'BolC5t30451H' => 'bol', 'BolC7t45880H' => 'bol', 'BolC7t46586H' => 'bol', 'BolC8t49301H' => 'bol', 'BolC8t51837H' => 'bol', 'BolC9t56822H' => 'bol', 'BolC9t59235H' => 'bol', 'BraA01t00234Z' => 'bra', 'BraA01t01563Z' => 'bra', 'BraA02t05147Z' => 'bra', 'BraA03t10947Z' => 'bra', 'BraA03t14633Z' => 'bra', 'BraA08t35112Z' => 'bra', 'BraA09t41330Z' => 'bra', 'BraA10t44570Z' => 'bra', 'C01p02670' => 'bna', 'C01p20260' => 'bna', 'C02p05890' => 'bna', 'C03p19530' => 'bna', 'C05p17470' => 'bna', 'C07p53900' => 'bna', 'C07p61630' => 'bna', 'C08p16800' => 'bna', 'C08p42810' => 'bna', 'C09p39480' => 'bna', 'C09p63980' => 'bna', 'CAN.G1001.7' => 'can', 'CAN.G1034.55' => 'can', 'CAN.G143.7' => 'can', 'CAN.G3340.1' => 'can', 'CAN.G358.19' => 'can', 'CAN.G373.2' => 'can', 'CAN.G674.16' => 'can', 'CAN.G674.17' => 'can', 'CAN.G674.18' => 'can', 'CAN.G732.2' => 'can', 'CAN.G732.3' => 'can', 'CAN.G993.39' => 'can', 'CANSAT01G2052' => 'cansat', 'CANSAT80G0070' => 'cansat', 'CANSAT80G0483' => 'cansat', 'CANSAT80G0625' => 'cansat', 'CARHR019690' => 'chi', 'CARHR080280' => 'chi', 'CARHR152750' => 'chi', 'CARHR152760' => 'chi', 'CARHR152770' => 'chi', 'CARHR200340' => 'chi', 'CARHR232370' => 'chi', 'CARHR244670' => 'chi', 'CARHR244680' => 'chi', 'CARHR257520' => 'chi', 'Carub.0001s1872' => 'cru', 'Carub.0006s1130' => 'cru', 'Carub.0007s0396' => 'cru', 'Carub.0007s0397' => 'cru', 'Carub.0007s1608' => 'cru', 'Carub.0008s1068' => 'cru', 'Carub.0008s1077' => 'cru', 'Ca_16158_v3' => 'car', 'Ca_17571_v3' => 'car', 'Ca_21936_v3' => 'car', 'Ca_22350_v3' => 'car', 'CBR_g22445' => 'cbr', 'CBR_g26290' => 'cbr', 'Cc04_g09610' => 'ccan', 'Cc04_g12280' => 'ccan', 'Cc07_g10230' => 'ccan', 'CDE02G0093' => 'cde', 'CDE02G0701' => 'cde', 'CDE04G1050' => 'cde', 'CDE05G1833' => 'cde', 'CDE05G3058' => 'cde', 'CDE05G3380' => 'cde', 'CDE06G0536' => 'cde', 'Cfa006923' => 'cfa', 'Cfa009402' => 'cfa', 'Cfa018751' => 'cfa', 'Cfa019164' => 'cfa', 'Cfa022935' => 'cfa', 'Ciclev10019081m.g' => 'ccl', 'Ciclev10025076m.g' => 'ccl', 'Ciclev10030712m.g' => 'ccl', 'Ciclev10033760m.g' => 'ccl', 'CiPaw.05G105600' => 'cil', 'CiPaw.08G136700' => 'cil', 'CiPaw.11G003900' => 'cil', 'CiPaw.11G023700' => 'cil', 'CiPaw.12G003700' => 'cil', 'ClCG06G017100' => 'cla', 'ClCG06G018110' => 'cla', 'ClCG07G008800' => 'cla', 'ClCG07G015330' => 'cla', 'COL.COLO4_13698' => 'col', 'COL.COLO4_16659' => 'col', 'COL.COLO4_21986' => 'col', 'COL.COLO4_24049' => 'col', 'COL.COLO4_29061' => 'col', 'COL.COLO4_29075' => 'col', 'COL.COLO4_30094' => 'col', 'Cpa.g.c33689' => 'cpa', 'Cpa.g.sc108.39' => 'cpa', 'Cpa.g.sc108.41' => 'cpa', 'Cpa.g.sc1163.1' => 'cpa', 'Cpa.g.sc4.155' => 'cpa', 'Cpa.g.sc6.194' => 'cpa', 'CsaV3_1G000340' => 'csa', 'CsaV3_1G001400' => 'csa', 'CsaV3_4G002220' => 'csa', 'CsaV3_4G005370' => 'csa', 'CSS0007487' => 'camsi', 'CSS0008066' => 'camsi', 'CSS0009120' => 'camsi', 'CSS0015512' => 'camsi', 'CSS0022409' => 'camsi', 'CSS0025358' => 'camsi', 'CSS0044547' => 'camsi', 'DCAR_013057' => 'dca', 'DCAR_015058' => 'dca', 'DCAR_016027' => 'dca', 'DCAR_017327' => 'dca', 'DCAR_020743' => 'dca', 'DCAR_026157' => 'dca', 'DCAR_032339' => 'dca', 'DCAR_032340' => 'dca', 'Dinv11200' => 'din', 'Dinv11201' => 'din', 'Dinv20631' => 'din', 'Dinv23182' => 'din', 'Dinv33466' => 'din', 'Dinv33583' => 'din', 'Dinv38565' => 'din', 'Duzib068G0200' => 'dzi', 'Duzib147G0132' => 'dzi', 'Duzib147G0635' => 'dzi', 'Duzib205G1670' => 'dzi', 'Duzib251G0606' => 'dzi', 'ECA232G3336' => 'eca', 'ECA232G3763' => 'eca', 'ECA232G4845' => 'eca', 'ECA234G1607' => 'eca', 'ECA246G0932' => 'eca', 'ECA247G0781' => 'eca', 'ECA247G1932' => 'eca', 'ECA247G2079' => 'eca', 'ECA247G3338' => 'eca', 'ECA247G4115' => 'eca', 'EL10Ac3g06552' => 'bvu', 'EL10Ac5g10721' => 'bvu', 'EL10Ac5g10722' => 'bvu', 'EL10Ac5g10723' => 'bvu', 'EL10Ac5g11361' => 'bvu', 'EL10Ac6g13553' => 'bvu', 'EL10As8g23872' => 'bvu', 'Eucgr.B00250' => 'egr', 'Eucgr.B00251' => 'egr', 'Eucgr.B03533' => 'egr', 'Eucgr.I02381' => 'egr', 'Eucgr.K02700' => 'egr', 'FAN02G0174' => 'fan', 'FAN02G3146' => 'fan', 'FAN04G1672' => 'fan', 'FAN04G2273' => 'fan', 'FAN05G2791' => 'fan', 'FAN05G4035' => 'fan', 'FAN07G0834' => 'fan', 'FAN08G1198' => 'fan', 'FAN09G4182' => 'fan', 'FAN12G0496' => 'fan', 'FAN13G1027' => 'fan', 'FAN13G2951' => 'fan', 'FAN14G0705' => 'fan', 'FAN14G0720' => 'fan', 'FAN17G0201' => 'fan', 'FAN17G2665' => 'fan', 'FAN18G1456' => 'fan', 'FAN18G1525' => 'fan', 'FAN18G3500' => 'fan', 'FAN28G2670' => 'fan', 'FvH4_1g12391' => 'fve', 'FvH4_4g23220' => 'fve', 'FvH4_5g08810' => 'fve', 'FvH4_5g28960' => 'fve', 'FvH4_6g42820' => 'fve', 'FvH4_6g51110' => 'fve', 'Glyma.02G051802' => 'gma', 'Glyma.04G185300' => 'gma', 'Glyma.05G202900' => 'gma', 'Glyma.08G010300' => 'gma', 'Glyma.16G131900' => 'gma', 'Glyma.17G087900' => 'gma', 'Gohir.A07G048600' => 'ghi', 'Gohir.A11G179000' => 'ghi', 'Gohir.A12G140900' => 'ghi', 'Gohir.A12G140950' => 'ghi', 'Gohir.A12G191700' => 'ghi', 'Gohir.A13G086300' => 'ghi', 'Gohir.D07G052900' => 'ghi', 'Gohir.D11G186600' => 'ghi', 'Gohir.D12G145575' => 'ghi', 'Gohir.D12G145650' => 'ghi', 'Gohir.D12G145725' => 'ghi', 'Gohir.D12G194050' => 'ghi', 'Gohir.D13G091800' => 'ghi', 'Gorai.001G055900' => 'gra', 'Gorai.007G198400' => 'gra', 'Gorai.008G157000' => 'gra', 'Gorai.008G157100' => 'gra', 'Gorai.008G208700' => 'gra', 'Gorai.010G138700' => 'gra', 'GSVIVG01000977001' => 'vvi', 'GSVIVG01007708001' => 'vvi', 'GSVIVG01008587001' => 'vvi', 'GSVIVG01018849001' => 'vvi', 'GSVIVG01032432001' => 'vvi', 'HanXRQChr02g0034131' => 'han', 'HanXRQChr02g0035981' => 'han', 'HanXRQChr02g0035991' => 'han', 'HanXRQChr05g0155611' => 'han', 'HanXRQChr05g0155621' => 'han', 'HanXRQChr08g0236501' => 'han', 'HanXRQChr09g0261321' => 'han', 'HanXRQChr09g0272081' => 'han', 'HanXRQChr10g0310741' => 'han', 'HanXRQChr11g0325591' => 'han', 'HanXRQChr12g0385691' => 'han', 'HanXRQChr13g0387801' => 'han', 'HanXRQChr15g0463011' => 'han', 'Haze_03826' => 'cav', 'Haze_03827' => 'cav', 'Haze_07183' => 'cav', 'Haze_07537' => 'cav', 'Haze_07539' => 'cav', 'Haze_12461' => 'cav', 'Haze_16115' => 'cav', 'Haze_16808' => 'cav', 'Haze_18531' => 'cav', 'Hma1.2p1_0046F.1_g026700' => 'hma', 'Hma1.2p1_0046F.1_g026710' => 'hma', 'Hma1.2p1_0168F.1_g074340' => 'hma', 'Hma1.2p1_0266F.1_g107030' => 'hma', 'Hma1.2p1_0266F.1_g107060' => 'hma', 'Hma1.2p1_0275F.1_g110510' => 'hma', 'Hma1.2p1_0592F.1_g185490' => 'hma', 'Hma1.2p1_0592F.1_g185500' => 'hma', 'Hma1.2p1_0592F.1_g185510' => 'hma', 'Hma1.2p1_0592F.1_g185520' => 'hma', 'Hma1.2p1_0592F.1_g185530' => 'hma', 'Hma1.2p1_0818F.1_g223450' => 'hma', 'HPP92_009708' => 'vpl', 'HPP92_009793' => 'vpl', 'HPP92_009796' => 'vpl', 'HPP92_009797' => 'vpl', 'HPP92_014940' => 'vpl', 'HPP92_014988' => 'vpl', 'Hund02463' => 'sun', 'Hund02760' => 'sun', 'Hund05071' => 'sun', 'Hund10108' => 'sun', 'Hund11204' => 'sun', 'Hund14016' => 'sun', 'Hund16464' => 'sun', 'Lalb_Chr09g0333391' => 'lal', 'Lalb_Chr11g0070461' => 'lal', 'Lalb_Chr12g0201671' => 'lal', 'Lalb_Chr13g0297161' => 'lal', 'Lj1g0002823' => 'lja', 'Lj3C1074T6' => 'lonja', 'Lj4A212T28' => 'lonja', 'Lj4g0005516' => 'lja', 'Lj4g0013705' => 'lja', 'Lj4g0027865' => 'lja', 'Lj5C92G16' => 'lonja', 'Lj5C92T12' => 'lonja', 'Lj7C596T3' => 'lonja', 'Lj9A446G59' => 'lonja', 'Lj9A482G21' => 'lonja', 'Lsat_1_v5_gn_1_28261' => 'lsa', 'Lsat_1_v5_gn_1_28281' => 'lsa', 'Lsat_1_v5_gn_1_32721' => 'lsa', 'Lsat_1_v5_gn_4_151760' => 'lsa', 'Lsat_1_v5_gn_4_2120' => 'lsa', 'Lsat_1_v5_gn_4_75761' => 'lsa', 'Lsat_1_v5_gn_5_10920' => 'lsa', 'Manes.02G099900' => 'mes', 'Manes.11G096200' => 'mes', 'Manes.12G007200' => 'mes', 'Manes.14G048300' => 'mes', 'Manes.17G114700' => 'mes', 'Mapoly0002s0070' => 'mpo', 'Mapoly0029s0099' => 'mpo', 'MBI07_g24742_MAGBIO' => 'mbi', 'MBI10_g27988_MAGBIO' => 'mbi', 'MBI11_g13057_MAGBIO' => 'mbi', 'MD02G1137200' => 'mdo', 'MD06G1137200' => 'mdo', 'MD07G1122300' => 'mdo', 'MD09G1078200' => 'mdo', 'MD13G1123700' => 'mdo', 'MD14G1151900' => 'mdo', 'MD17G1030900' => 'mdo', 'MD17G1068200' => 'mdo', 'MD17G1068600' => 'mdo', 'Medtr3g077540' => 'mtr', 'Medtr4g105530' => 'mtr', 'Medtr8g076580' => 'mtr', 'Medtr8g076590' => 'mtr', 'Medtr8g096410' => 'mtr', 'MELO3C016411.2' => 'cme', 'MELO3C017780.2' => 'cme', 'MELO3C022560.2' => 'cme', 'MELO3C026187.2' => 'cme', 'MELO3C026286.2' => 'cme', 'MELO3C032854.2' => 'cme', 'Migut.H02495' => 'egut', 'Migut.I00561' => 'egut', 'Migut.K01015' => 'egut', 'Migut.K01016' => 'egut', 'Migut.L00743' => 'egut', 'Migut.L00744' => 'egut', 'Migut.L00746' => 'egut', 'Migut.L00798' => 'egut', 'Migut.L00799' => 'egut', 'Migut.N02096' => 'egut', 'MSTRG.11259' => 'ama', 'MSTRG.23142' => 'ama', 'MSTRG.2499' => 'ama', 'Nitab4.5_0000003g0730' => 'nta', 'Nitab4.5_0000137g0020' => 'nta', 'Nitab4.5_0000721g0210' => 'nta', 'Nitab4.5_0000723g0050' => 'nta', 'Nitab4.5_0000913g0070' => 'nta', 'Nitab4.5_0001332g0040' => 'nta', 'Nitab4.5_0001771g0050' => 'nta', 'Nitab4.5_0001918g0050' => 'nta', 'Nitab4.5_0002686g0030' => 'nta', 'Nitab4.5_0003156g0020' => 'nta', 'Nitab4.5_0003383g0040' => 'nta', 'Nitab4.5_0003918g0010' => 'nta', 'Nitab4.5_0006760g0010' => 'nta', 'Nn1g05981' => 'nnu', 'Nn1g06288' => 'nnu', 'Nn3g16371' => 'nnu', 'Nn3g16786' => 'nnu', 'Nn4g22232' => 'nnu', 'Oeu005144.1' => 'oeu', 'Oeu005145.1' => 'oeu', 'Oeu011348.1' => 'oeu', 'Oeu016415.1' => 'oeu', 'Oeu023501.1' => 'oeu', 'Oeu044473.1' => 'oeu', 'Oeu048892.2' => 'oeu', 'Os01g0549200' => 'osa', 'Os02g0469300' => 'osa', 'Os04g0311100' => 'osa', 'Os06g0474900' => 'osa', 'Os10g0181700' => 'osa', 'Os11g0454800' => 'osa', 'Peaxi162Scf00037g00714' => 'pax', 'Peaxi162Scf00084g01217' => 'pax', 'Peaxi162Scf00257g00217' => 'pax', 'Peaxi162Scf00516g00215' => 'pax', 'Peaxi162Scf00689g00123' => 'pax', 'PGR044G2719' => 'pgr', 'PGR083G1360' => 'pgr', 'PGR102G2849' => 'pgr', 'PGR119G2534' => 'pgr', 'PGSC0003DMG400003538' => 'stu', 'PGSC0003DMG400028138' => 'stu', 'PGSC0003DMG400031732' => 'stu', 'PGSC0003DMG400038165' => 'stu', 'Phvul.002G284600' => 'pvu', 'Phvul.003G258200' => 'pvu', 'Phvul.009G176500' => 'pvu', 'Potri.003G167201' => 'ptr', 'Potri.005G118400' => 'ptr', 'Potri.012G089000' => 'ptr', 'Potri.012G102800' => 'ptr', 'Potri.015G079400' => 'ptr', 'Potri.015G100900' => 'ptr', 'Pp3c14_9810' => 'ppa', 'Pp3c15_10450' => 'ppa', 'Pp3c20_19150' => 'ppa', 'Pp3c23_12740' => 'ppa', 'Pp3c23_6310' => 'ppa', 'Pp3c24_3720' => 'ppa', 'Pp3c27_2580' => 'ppa', 'Pp3c9_8990' => 'ppa', 'PRCOL_00002854' => 'pco', 'Prupe.1G221200' => 'ppe', 'Prupe.3G289000' => 'ppe', 'Prupe.5G147000' => 'ppe', 'Prupe.6G157300' => 'ppe', 'Prupe.7G163400' => 'ppe', 'Psat0s2177g0040' => 'psa', 'Psat3g174760' => 'psa', 'Psat3g192160' => 'psa', 'Psat4g058520' => 'psa', 'Psat4g096840' => 'psa', 'Psat7g037320' => 'psa', 'PSO017G1274' => 'pso', 'PSO017G5166' => 'pso', 'PSO063G4558' => 'pso', 'PSO170G4458' => 'pso', 'PSO170G5005' => 'pso', 'PSO210G6156' => 'pso', 'PSO210G6635' => 'pso', 'PSO210G7397' => 'pso', 'PSO210G7700' => 'pso', 'PSO455G0035' => 'pso', 'PSO455G0180' => 'pso', 'PSO478G4515' => 'pso', 'PSO832G1305' => 'pso', 'PSO832G3489' => 'pso', 'QL02p075247' => 'qlo', 'QL03p051148' => 'qlo', 'QL05p010313' => 'qlo', 'QL06p034627' => 'qlo', 'QL10p001889' => 'qlo', 'QL10p010846' => 'qlo', 'RcHm_v2.0_Chr1g0350621' => 'rch', 'RcHm_v2.0_Chr1g0350641' => 'rch', 'RcHm_v2.0_Chr2g0092891' => 'rch', 'RcHm_v2.0_Chr2g0100251' => 'rch', 'RcHm_v2.0_Chr2g0158661' => 'rch', 'RcHm_v2.0_Chr2g0172741' => 'rch', 'RcHm_v2.0_Chr4g0429571' => 'rch', 'RcHm_v2.0_Chr5g0042471' => 'rch', 'RcHm_v2.0_Chr7g0189451' => 'rch', 'Rhsim08G0052000' => 'rsi', 'Rhsim08G0174400' => 'rsi', 'Rhsim08G0193200' => 'rsi', 'Rhsim10G0214800' => 'rsi', 'Rhsim10G0214900' => 'rsi', 'Rhsim10G0215000' => 'rsi', 'Rhsim12G0022900' => 'rsi', 'Rhsim12G0177500' => 'rsi', 'Rhsim12G0177700' => 'rsi', 'Sabra03G0122600' => 'sbr', 'Sabra05G0097400' => 'sbr', 'Sabra12G0064100' => 'sbr', 'Sabra15G0121300' => 'sbr', 'SalBow2G0642' => 'sbo', 'SalBow5G2667' => 'sbo', 'SalBow5G4873' => 'sbo', 'SalBow8G2395' => 'sbo', 'Sc03g0003290' => 'sci', 'Sc10g0010130' => 'sci', 'Sc22g0003650' => 'sci', 'Sed0001603' => 'sed', 'Sed0004259' => 'sed', 'Sed0006789' => 'sed', 'Sed0011838' => 'sed', 'Sed0012964' => 'sed', 'Sed0016383' => 'sed', 'Sed0019010' => 'sed', 'Sed0020188' => 'sed', 'SEGI_04702' => 'sgi', 'SEGI_17231' => 'sgi', 'SEGI_18877' => 'sgi', 'SEGI_25196' => 'sgi', 'SEGI_25515' => 'sgi', 'SEGI_28445' => 'sgi', 'SEGI_37452' => 'sgi', 'SGA_v2.0_scaffold188G40336' => 'sas', 'SGA_v2.0_scaffold228G43247' => 'sas', 'SGA_v2.0_scaffold280G46853' => 'sas', 'SGA_v2.0_scaffold34G13808' => 'sas', 'SGA_v2.0_scaffold40G15576' => 'sas', 'SGA_v2.0_scaffold611G53188' => 'sas', 'SGA_v2.0_scaffold78G25461' => 'sas', 'SGA_v2.0_scaffold90G27888' => 'sas', 'SHI08601' => 'shi', 'SHI08606' => 'shi', 'SHI17117' => 'shi', 'SHI17119' => 'shi', 'SMO118G0201' => 'smo', 'SMO169G0247' => 'smo', 'SMO176G0006' => 'smo', 'SMO176G0015' => 'smo', 'SMO202G0006' => 'smo', 'SMO240G0050' => 'smo', 'SMO286G0009' => 'smo', 'SMO338G0033' => 'smo', 'SMO356G0533' => 'smo', 'SMO364G0382' => 'smo', 'SMO367G0166' => 'smo', 'SMO367G1098' => 'smo', 'Solyc01g009920.3' => 'sly', 'Solyc01g099300.3' => 'sly', 'Solyc02g084700.3' => 'sly', 'Solyc03g097520.3' => 'sly', 'Solyc06g071580.3' => 'sly', 'Solyc10g081760.3' => 'sly', 'Sopen01g005480' => 'spe', 'Sopen01g042850' => 'spe', 'Sopen02g029370' => 'spe', 'Sopen03g028280' => 'spe', 'Sopen06g027870' => 'spe', 'Sopen10g032270' => 'spe', 'Sp5g18180' => 'spa', 'Sp6g12880' => 'spa', 'Sp6g30850' => 'spa', 'Sp7g22960' => 'spa', 'Sp7g34010' => 'spa', 'SpUn1326_0010' => 'spa', 'TAR371G0242' => 'tar', 'TAR622G0638' => 'tar', 'TAR628G1548' => 'tar', 'TAR629G1079' => 'tar', 'TAR629G3413' => 'tar', 'THA.LOC104804249' => 'tha', 'THA.LOC104808315' => 'tha', 'THA.LOC104809238' => 'tha', 'THA.LOC104825484' => 'tha', 'Thecc.01G025500' => 'tca', 'Thecc.03G015800' => 'tca', 'Thecc.03G018000' => 'tca', 'Thecc.03G134800' => 'tca', 'Thecc.04G014700' => 'tca', 'Thhalv10006991m.g' => 'esa', 'Thhalv10012707m.g' => 'esa', 'Thhalv10015739m.g' => 'esa', 'Thhalv10024553m.g' => 'esa', 'Thhalv10024673m.g' => 'esa', 'Thhalv10029187m.g' => 'esa', 'TPR.G12971' => 'tpr', 'TPR.G29396' => 'tpr', 'TPR.G33376' => 'tpr', 'TPR.G35508' => 'tpr', 'TPR.G35516' => 'tpr', 'TPR.G37317' => 'tpr', 'TPR.G37389' => 'tpr', 'TPR.G37523' => 'tpr', 'TPR.G559' => 'tpr', 'TWI14G0070' => 'twi', 'TWI14G0729' => 'twi', 'TWI18G0596' => 'twi', 'TWI39G0780' => 'twi', 'TWI39G0850' => 'twi', 'TWI73G1052' => 'twi', 'unitig_52.g17485' => 'ugi', 'unitig_61.g26355' => 'ugi', 'vmacro01040' => 'vma', 'vmacro16731' => 'vma', 'vmacro18270' => 'vma', 'vmacro19142' => 'vma', 'vmacro19407' => 'vma', 'vmacro19408' => 'vma', 'vmacro21899' => 'vma', 'vmacro21900' => 'vma', 'vmacro21901' => 'vma', 'VMungo0251G0490' => 'vmu', 'VMungo0251G1748' => 'vmu', 'VMungo1309G0421' => 'vmu', 'Zm00001eb086500' => 'zma', 'Zm00001eb150680' => 'zma', 'Zm00001eb162330' => 'zma', 'Zm00001eb203130' => 'zma', 'Zm00001eb369480' => 'zma', 'Zm00001eb382340' => 'zma', 'Zm00001eb416360' => 'zma' ) $gf_id = 'HOM05D000902' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000902' ) $data_identifier = 'HOM05D000902' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 13, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 10, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 6, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 9, 'hma' => (int) 12, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 4, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 6, 'ppa' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 6, 'rch' => (int) 9, 'rsi' => (int) 9, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 12, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 3, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416360' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000902', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '663', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02470' => 'bna', 'A01p16260' => 'bna', 'A02p01680' => 'bna', 'A03p16600' => 'bna', 'A03p55660' => 'bna', 'A03p64160' => 'bna', 'A03p64170' => 'bna', 'A08p31900' => 'bna', 'A09p59530' => 'bna', 'A10p08230' => 'bna', 'A10p25090' => 'bna', 'Aa31LG3G7100' => 'aar', 'Aa31LG3G7110' => 'aar', 'Aa31LG6G13160' => 'aar', 'Aa31LG7G10770' => 'aar', 'Aa31LG7G3830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2723' => 'aag', 'Actinidia08045' => 'ach', 'Actinidia08888' => 'ach', 'Actinidia18333' => 'ach', 'Actinidia19334' => 'ach', 'Actinidia25552' => 'ach', 'Actinidia26089' => 'ach', 'Actinidia30615' => 'ach', 'Actinidia30616' => 'ach', 'Actinidia33083' => 'ach', 'Actinidia35762' => 'ach', 'Ah.02g110620' => 'amhyb', 'Ah.11g046390' => 'amhyb', 'AL1G31670' => 'aly', 'AL6G23730' => 'aly', 'AL7G14740' => 'aly', 'AL7G14750' => 'aly', 'AL7G14760' => 'aly', 'AL7G28220' => 'aly', 'AL8G24940' => 'aly', 'Aqoxy3G01665' => 'aox', 'Aqoxy3G02853' => 'aox', 'Aqoxy5G01513' => 'aox', 'Aqoxy5G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8SKA4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ75LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKDA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0LJZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7REX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZP4YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWX7I5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2QKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS0L9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPCD8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q161UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC7XCF' => 'arhy', 'AT1G19100' => 'ath', 'AT4G24970' => 'ath', 'AT4G36270' => 'ath', 'AT4G36280' => 'ath', 'AT4G36290' => 'ath', 'AT5G13130' => 'ath', 'AT5G50780' => 'ath', 'ATR0582G266' => 'atr', 'ATR0661G195' => 'atr', 'ATR1152G031' => 'atr', 'Atru.chr11.2382' => 'acertr', 'Atru.chr12.2337' => 'acertr', 'Atru.chr3.744' => 'acertr', 'Atru.chr6.1870' => 'acertr', 'Atru.chr9.2515' => 'acertr', 'AUR62004120' => 'cqu', 'AUR62005667' => 'cqu', 'AUR62007634' => 'cqu', 'AUR62008186' => 'cqu', 'AUR62008187' => 'cqu', 'AUR62008188' => 'cqu', 'AUR62027954' => 'cqu', 'AUR62028766' => 'cqu', 'AUR62028767' => 'cqu', 'AUR62028768' => 'cqu', 'AUR62028886' => 'cqu', 'AUR62029563' => 'cqu', 'AUR62038832' => 'cqu', 'BcaB01g04149' => 'bca', 'BcaB03g12940' => 'bca', 'BcaB03g13090' => 'bca', 'BcaB03g14466' => 'bca', 'BcaB05g24035' => 'bca', 'BcaC01g06050' => 'bca', 'BcaC04g19148' => 'bca', 'BcaC04g20761' => 'bca', 'BcaC06g32845' => 'bca', 'BcaC07g41274' => 'bca', 'BcaC09g50827' => 'bca', 'BcaNung00741' => 'bca', 'BcaNung00742' => 'bca', 'BcaNung01859' => 'bca', 'BcaNung03985' => 'bca', 'BcaNung03989' => 'bca', 'BcaNung05661' => 'bca', 'BolC1t00257H' => 'bol', 'BolC1t01956H' => 'bol', 'BolC2t06534H' => 'bol', 'BolC3t14334H' => 'bol', 'BolC5t30451H' => 'bol', 'BolC7t45880H' => 'bol', 'BolC7t46586H' => 'bol', 'BolC8t49301H' => 'bol', 'BolC8t51837H' => 'bol', 'BolC9t56822H' => 'bol', 'BolC9t59235H' => 'bol', 'BraA01t00234Z' => 'bra', 'BraA01t01563Z' => 'bra', 'BraA02t05147Z' => 'bra', 'BraA03t10947Z' => 'bra', 'BraA03t14633Z' => 'bra', 'BraA08t35112Z' => 'bra', 'BraA09t41330Z' => 'bra', 'BraA10t44570Z' => 'bra', 'C01p02670' => 'bna', 'C01p20260' => 'bna', 'C02p05890' => 'bna', 'C03p19530' => 'bna', 'C05p17470' => 'bna', 'C07p53900' => 'bna', 'C07p61630' => 'bna', 'C08p16800' => 'bna', 'C08p42810' => 'bna', 'C09p39480' => 'bna', 'C09p63980' => 'bna', 'CAN.G1001.7' => 'can', 'CAN.G1034.55' => 'can', 'CAN.G143.7' => 'can', 'CAN.G3340.1' => 'can', 'CAN.G358.19' => 'can', 'CAN.G373.2' => 'can', 'CAN.G674.16' => 'can', 'CAN.G674.17' => 'can', 'CAN.G674.18' => 'can', 'CAN.G732.2' => 'can', 'CAN.G732.3' => 'can', 'CAN.G993.39' => 'can', 'CANSAT01G2052' => 'cansat', 'CANSAT80G0070' => 'cansat', 'CANSAT80G0483' => 'cansat', 'CANSAT80G0625' => 'cansat', 'CARHR019690' => 'chi', 'CARHR080280' => 'chi', 'CARHR152750' => 'chi', 'CARHR152760' => 'chi', 'CARHR152770' => 'chi', 'CARHR200340' => 'chi', 'CARHR232370' => 'chi', 'CARHR244670' => 'chi', 'CARHR244680' => 'chi', 'CARHR257520' => 'chi', 'Carub.0001s1872' => 'cru', 'Carub.0006s1130' => 'cru', 'Carub.0007s0396' => 'cru', 'Carub.0007s0397' => 'cru', 'Carub.0007s1608' => 'cru', 'Carub.0008s1068' => 'cru', 'Carub.0008s1077' => 'cru', 'Ca_16158_v3' => 'car', 'Ca_17571_v3' => 'car', 'Ca_21936_v3' => 'car', 'Ca_22350_v3' => 'car', 'CBR_g22445' => 'cbr', 'CBR_g26290' => 'cbr', 'Cc04_g09610' => 'ccan', 'Cc04_g12280' => 'ccan', 'Cc07_g10230' => 'ccan', 'CDE02G0093' => 'cde', 'CDE02G0701' => 'cde', 'CDE04G1050' => 'cde', 'CDE05G1833' => 'cde', 'CDE05G3058' => 'cde', 'CDE05G3380' => 'cde', 'CDE06G0536' => 'cde', 'Cfa006923' => 'cfa', 'Cfa009402' => 'cfa', 'Cfa018751' => 'cfa', 'Cfa019164' => 'cfa', 'Cfa022935' => 'cfa', 'Ciclev10019081m.g' => 'ccl', 'Ciclev10025076m.g' => 'ccl', 'Ciclev10030712m.g' => 'ccl', 'Ciclev10033760m.g' => 'ccl', 'CiPaw.05G105600' => 'cil', 'CiPaw.08G136700' => 'cil', 'CiPaw.11G003900' => 'cil', 'CiPaw.11G023700' => 'cil', 'CiPaw.12G003700' => 'cil', 'ClCG06G017100' => 'cla', 'ClCG06G018110' => 'cla', 'ClCG07G008800' => 'cla', 'ClCG07G015330' => 'cla', 'COL.COLO4_13698' => 'col', 'COL.COLO4_16659' => 'col', 'COL.COLO4_21986' => 'col', 'COL.COLO4_24049' => 'col', 'COL.COLO4_29061' => 'col', 'COL.COLO4_29075' => 'col', 'COL.COLO4_30094' => 'col', 'Cpa.g.c33689' => 'cpa', 'Cpa.g.sc108.39' => 'cpa', 'Cpa.g.sc108.41' => 'cpa', 'Cpa.g.sc1163.1' => 'cpa', 'Cpa.g.sc4.155' => 'cpa', 'Cpa.g.sc6.194' => 'cpa', 'CsaV3_1G000340' => 'csa', 'CsaV3_1G001400' => 'csa', 'CsaV3_4G002220' => 'csa', 'CsaV3_4G005370' => 'csa', 'CSS0007487' => 'camsi', 'CSS0008066' => 'camsi', 'CSS0009120' => 'camsi', 'CSS0015512' => 'camsi', 'CSS0022409' => 'camsi', 'CSS0025358' => 'camsi', 'CSS0044547' => 'camsi', 'DCAR_013057' => 'dca', 'DCAR_015058' => 'dca', 'DCAR_016027' => 'dca', 'DCAR_017327' => 'dca', 'DCAR_020743' => 'dca', 'DCAR_026157' => 'dca', 'DCAR_032339' => 'dca', 'DCAR_032340' => 'dca', 'Dinv11200' => 'din', 'Dinv11201' => 'din', 'Dinv20631' => 'din', 'Dinv23182' => 'din', 'Dinv33466' => 'din', 'Dinv33583' => 'din', 'Dinv38565' => 'din', 'Duzib068G0200' => 'dzi', 'Duzib147G0132' => 'dzi', 'Duzib147G0635' => 'dzi', 'Duzib205G1670' => 'dzi', 'Duzib251G0606' => 'dzi', 'ECA232G3336' => 'eca', 'ECA232G3763' => 'eca', 'ECA232G4845' => 'eca', 'ECA234G1607' => 'eca', 'ECA246G0932' => 'eca', 'ECA247G0781' => 'eca', 'ECA247G1932' => 'eca', 'ECA247G2079' => 'eca', 'ECA247G3338' => 'eca', 'ECA247G4115' => 'eca', 'EL10Ac3g06552' => 'bvu', 'EL10Ac5g10721' => 'bvu', 'EL10Ac5g10722' => 'bvu', 'EL10Ac5g10723' => 'bvu', 'EL10Ac5g11361' => 'bvu', 'EL10Ac6g13553' => 'bvu', 'EL10As8g23872' => 'bvu', 'Eucgr.B00250' => 'egr', 'Eucgr.B00251' => 'egr', 'Eucgr.B03533' => 'egr', 'Eucgr.I02381' => 'egr', 'Eucgr.K02700' => 'egr', 'FAN02G0174' => 'fan', 'FAN02G3146' => 'fan', 'FAN04G1672' => 'fan', 'FAN04G2273' => 'fan', 'FAN05G2791' => 'fan', 'FAN05G4035' => 'fan', 'FAN07G0834' => 'fan', 'FAN08G1198' => 'fan', 'FAN09G4182' => 'fan', 'FAN12G0496' => 'fan', 'FAN13G1027' => 'fan', 'FAN13G2951' => 'fan', 'FAN14G0705' => 'fan', 'FAN14G0720' => 'fan', 'FAN17G0201' => 'fan', 'FAN17G2665' => 'fan', 'FAN18G1456' => 'fan', 'FAN18G1525' => 'fan', 'FAN18G3500' => 'fan', 'FAN28G2670' => 'fan', 'FvH4_1g12391' => 'fve', 'FvH4_4g23220' => 'fve', 'FvH4_5g08810' => 'fve', 'FvH4_5g28960' => 'fve', 'FvH4_6g42820' => 'fve', 'FvH4_6g51110' => 'fve', 'Glyma.02G051802' => 'gma', 'Glyma.04G185300' => 'gma', 'Glyma.05G202900' => 'gma', 'Glyma.08G010300' => 'gma', 'Glyma.16G131900' => 'gma', 'Glyma.17G087900' => 'gma', 'Gohir.A07G048600' => 'ghi', 'Gohir.A11G179000' => 'ghi', 'Gohir.A12G140900' => 'ghi', 'Gohir.A12G140950' => 'ghi', 'Gohir.A12G191700' => 'ghi', 'Gohir.A13G086300' => 'ghi', 'Gohir.D07G052900' => 'ghi', 'Gohir.D11G186600' => 'ghi', 'Gohir.D12G145575' => 'ghi', 'Gohir.D12G145650' => 'ghi', 'Gohir.D12G145725' => 'ghi', 'Gohir.D12G194050' => 'ghi', 'Gohir.D13G091800' => 'ghi', 'Gorai.001G055900' => 'gra', 'Gorai.007G198400' => 'gra', 'Gorai.008G157000' => 'gra', 'Gorai.008G157100' => 'gra', 'Gorai.008G208700' => 'gra', 'Gorai.010G138700' => 'gra', 'GSVIVG01000977001' => 'vvi', 'GSVIVG01007708001' => 'vvi', 'GSVIVG01008587001' => 'vvi', 'GSVIVG01018849001' => 'vvi', 'GSVIVG01032432001' => 'vvi', 'HanXRQChr02g0034131' => 'han', 'HanXRQChr02g0035981' => 'han', 'HanXRQChr02g0035991' => 'han', 'HanXRQChr05g0155611' => 'han', 'HanXRQChr05g0155621' => 'han', 'HanXRQChr08g0236501' => 'han', 'HanXRQChr09g0261321' => 'han', 'HanXRQChr09g0272081' => 'han', 'HanXRQChr10g0310741' => 'han', 'HanXRQChr11g0325591' => 'han', 'HanXRQChr12g0385691' => 'han', 'HanXRQChr13g0387801' => 'han', 'HanXRQChr15g0463011' => 'han', 'Haze_03826' => 'cav', 'Haze_03827' => 'cav', 'Haze_07183' => 'cav', 'Haze_07537' => 'cav', 'Haze_07539' => 'cav', 'Haze_12461' => 'cav', 'Haze_16115' => 'cav', 'Haze_16808' => 'cav', 'Haze_18531' => 'cav', 'Hma1.2p1_0046F.1_g026700' => 'hma', 'Hma1.2p1_0046F.1_g026710' => 'hma', 'Hma1.2p1_0168F.1_g074340' => 'hma', 'Hma1.2p1_0266F.1_g107030' => 'hma', 'Hma1.2p1_0266F.1_g107060' => 'hma', 'Hma1.2p1_0275F.1_g110510' => 'hma', 'Hma1.2p1_0592F.1_g185490' => 'hma', 'Hma1.2p1_0592F.1_g185500' => 'hma', 'Hma1.2p1_0592F.1_g185510' => 'hma', 'Hma1.2p1_0592F.1_g185520' => 'hma', 'Hma1.2p1_0592F.1_g185530' => 'hma', 'Hma1.2p1_0818F.1_g223450' => 'hma', 'HPP92_009708' => 'vpl', 'HPP92_009793' => 'vpl', 'HPP92_009796' => 'vpl', 'HPP92_009797' => 'vpl', 'HPP92_014940' => 'vpl', 'HPP92_014988' => 'vpl', 'Hund02463' => 'sun', 'Hund02760' => 'sun', 'Hund05071' => 'sun', 'Hund10108' => 'sun', 'Hund11204' => 'sun', 'Hund14016' => 'sun', 'Hund16464' => 'sun', 'Lalb_Chr09g0333391' => 'lal', 'Lalb_Chr11g0070461' => 'lal', 'Lalb_Chr12g0201671' => 'lal', 'Lalb_Chr13g0297161' => 'lal', 'Lj1g0002823' => 'lja', 'Lj3C1074T6' => 'lonja', 'Lj4A212T28' => 'lonja', 'Lj4g0005516' => 'lja', 'Lj4g0013705' => 'lja', 'Lj4g0027865' => 'lja', 'Lj5C92G16' => 'lonja', 'Lj5C92T12' => 'lonja', 'Lj7C596T3' => 'lonja', 'Lj9A446G59' => 'lonja', 'Lj9A482G21' => 'lonja', 'Lsat_1_v5_gn_1_28261' => 'lsa', 'Lsat_1_v5_gn_1_28281' => 'lsa', 'Lsat_1_v5_gn_1_32721' => 'lsa', 'Lsat_1_v5_gn_4_151760' => 'lsa', 'Lsat_1_v5_gn_4_2120' => 'lsa', 'Lsat_1_v5_gn_4_75761' => 'lsa', 'Lsat_1_v5_gn_5_10920' => 'lsa', 'Manes.02G099900' => 'mes', 'Manes.11G096200' => 'mes', 'Manes.12G007200' => 'mes', 'Manes.14G048300' => 'mes', 'Manes.17G114700' => 'mes', 'Mapoly0002s0070' => 'mpo', 'Mapoly0029s0099' => 'mpo', 'MBI07_g24742_MAGBIO' => 'mbi', 'MBI10_g27988_MAGBIO' => 'mbi', 'MBI11_g13057_MAGBIO' => 'mbi', 'MD02G1137200' => 'mdo', 'MD06G1137200' => 'mdo', 'MD07G1122300' => 'mdo', 'MD09G1078200' => 'mdo', 'MD13G1123700' => 'mdo', 'MD14G1151900' => 'mdo', 'MD17G1030900' => 'mdo', 'MD17G1068200' => 'mdo', 'MD17G1068600' => 'mdo', 'Medtr3g077540' => 'mtr', 'Medtr4g105530' => 'mtr', 'Medtr8g076580' => 'mtr', 'Medtr8g076590' => 'mtr', 'Medtr8g096410' => 'mtr', 'MELO3C016411.2' => 'cme', 'MELO3C017780.2' => 'cme', 'MELO3C022560.2' => 'cme', 'MELO3C026187.2' => 'cme', 'MELO3C026286.2' => 'cme', 'MELO3C032854.2' => 'cme', 'Migut.H02495' => 'egut', 'Migut.I00561' => 'egut', 'Migut.K01015' => 'egut', 'Migut.K01016' => 'egut', 'Migut.L00743' => 'egut', 'Migut.L00744' => 'egut', 'Migut.L00746' => 'egut', 'Migut.L00798' => 'egut', 'Migut.L00799' => 'egut', 'Migut.N02096' => 'egut', 'MSTRG.11259' => 'ama', 'MSTRG.23142' => 'ama', 'MSTRG.2499' => 'ama', 'Nitab4.5_0000003g0730' => 'nta', 'Nitab4.5_0000137g0020' => 'nta', 'Nitab4.5_0000721g0210' => 'nta', 'Nitab4.5_0000723g0050' => 'nta', 'Nitab4.5_0000913g0070' => 'nta', 'Nitab4.5_0001332g0040' => 'nta', 'Nitab4.5_0001771g0050' => 'nta', 'Nitab4.5_0001918g0050' => 'nta', 'Nitab4.5_0002686g0030' => 'nta', 'Nitab4.5_0003156g0020' => 'nta', 'Nitab4.5_0003383g0040' => 'nta', 'Nitab4.5_0003918g0010' => 'nta', 'Nitab4.5_0006760g0010' => 'nta', 'Nn1g05981' => 'nnu', 'Nn1g06288' => 'nnu', 'Nn3g16371' => 'nnu', 'Nn3g16786' => 'nnu', 'Nn4g22232' => 'nnu', 'Oeu005144.1' => 'oeu', 'Oeu005145.1' => 'oeu', 'Oeu011348.1' => 'oeu', 'Oeu016415.1' => 'oeu', 'Oeu023501.1' => 'oeu', 'Oeu044473.1' => 'oeu', 'Oeu048892.2' => 'oeu', 'Os01g0549200' => 'osa', 'Os02g0469300' => 'osa', 'Os04g0311100' => 'osa', 'Os06g0474900' => 'osa', 'Os10g0181700' => 'osa', 'Os11g0454800' => 'osa', 'Peaxi162Scf00037g00714' => 'pax', 'Peaxi162Scf00084g01217' => 'pax', 'Peaxi162Scf00257g00217' => 'pax', 'Peaxi162Scf00516g00215' => 'pax', 'Peaxi162Scf00689g00123' => 'pax', 'PGR044G2719' => 'pgr', 'PGR083G1360' => 'pgr', 'PGR102G2849' => 'pgr', 'PGR119G2534' => 'pgr', 'PGSC0003DMG400003538' => 'stu', 'PGSC0003DMG400028138' => 'stu', 'PGSC0003DMG400031732' => 'stu', 'PGSC0003DMG400038165' => 'stu', 'Phvul.002G284600' => 'pvu', 'Phvul.003G258200' => 'pvu', 'Phvul.009G176500' => 'pvu', 'Potri.003G167201' => 'ptr', 'Potri.005G118400' => 'ptr', 'Potri.012G089000' => 'ptr', 'Potri.012G102800' => 'ptr', 'Potri.015G079400' => 'ptr', 'Potri.015G100900' => 'ptr', 'Pp3c14_9810' => 'ppa', 'Pp3c15_10450' => 'ppa', 'Pp3c20_19150' => 'ppa', 'Pp3c23_12740' => 'ppa', 'Pp3c23_6310' => 'ppa', 'Pp3c24_3720' => 'ppa', 'Pp3c27_2580' => 'ppa', 'Pp3c9_8990' => 'ppa', 'PRCOL_00002854' => 'pco', 'Prupe.1G221200' => 'ppe', 'Prupe.3G289000' => 'ppe', 'Prupe.5G147000' => 'ppe', 'Prupe.6G157300' => 'ppe', 'Prupe.7G163400' => 'ppe', 'Psat0s2177g0040' => 'psa', 'Psat3g174760' => 'psa', 'Psat3g192160' => 'psa', 'Psat4g058520' => 'psa', 'Psat4g096840' => 'psa', 'Psat7g037320' => 'psa', 'PSO017G1274' => 'pso', 'PSO017G5166' => 'pso', 'PSO063G4558' => 'pso', 'PSO170G4458' => 'pso', 'PSO170G5005' => 'pso', 'PSO210G6156' => 'pso', 'PSO210G6635' => 'pso', 'PSO210G7397' => 'pso', 'PSO210G7700' => 'pso', 'PSO455G0035' => 'pso', 'PSO455G0180' => 'pso', 'PSO478G4515' => 'pso', 'PSO832G1305' => 'pso', 'PSO832G3489' => 'pso', 'QL02p075247' => 'qlo', 'QL03p051148' => 'qlo', 'QL05p010313' => 'qlo', 'QL06p034627' => 'qlo', 'QL10p001889' => 'qlo', 'QL10p010846' => 'qlo', 'RcHm_v2.0_Chr1g0350621' => 'rch', 'RcHm_v2.0_Chr1g0350641' => 'rch', 'RcHm_v2.0_Chr2g0092891' => 'rch', 'RcHm_v2.0_Chr2g0100251' => 'rch', 'RcHm_v2.0_Chr2g0158661' => 'rch', 'RcHm_v2.0_Chr2g0172741' => 'rch', 'RcHm_v2.0_Chr4g0429571' => 'rch', 'RcHm_v2.0_Chr5g0042471' => 'rch', 'RcHm_v2.0_Chr7g0189451' => 'rch', 'Rhsim08G0052000' => 'rsi', 'Rhsim08G0174400' => 'rsi', 'Rhsim08G0193200' => 'rsi', 'Rhsim10G0214800' => 'rsi', 'Rhsim10G0214900' => 'rsi', 'Rhsim10G0215000' => 'rsi', 'Rhsim12G0022900' => 'rsi', 'Rhsim12G0177500' => 'rsi', 'Rhsim12G0177700' => 'rsi', 'Sabra03G0122600' => 'sbr', 'Sabra05G0097400' => 'sbr', 'Sabra12G0064100' => 'sbr', 'Sabra15G0121300' => 'sbr', 'SalBow2G0642' => 'sbo', 'SalBow5G2667' => 'sbo', 'SalBow5G4873' => 'sbo', 'SalBow8G2395' => 'sbo', 'Sc03g0003290' => 'sci', 'Sc10g0010130' => 'sci', 'Sc22g0003650' => 'sci', 'Sed0001603' => 'sed', 'Sed0004259' => 'sed', 'Sed0006789' => 'sed', 'Sed0011838' => 'sed', 'Sed0012964' => 'sed', 'Sed0016383' => 'sed', 'Sed0019010' => 'sed', 'Sed0020188' => 'sed', 'SEGI_04702' => 'sgi', 'SEGI_17231' => 'sgi', 'SEGI_18877' => 'sgi', 'SEGI_25196' => 'sgi', 'SEGI_25515' => 'sgi', 'SEGI_28445' => 'sgi', 'SEGI_37452' => 'sgi', 'SGA_v2.0_scaffold188G40336' => 'sas', 'SGA_v2.0_scaffold228G43247' => 'sas', 'SGA_v2.0_scaffold280G46853' => 'sas', 'SGA_v2.0_scaffold34G13808' => 'sas', 'SGA_v2.0_scaffold40G15576' => 'sas', 'SGA_v2.0_scaffold611G53188' => 'sas', 'SGA_v2.0_scaffold78G25461' => 'sas', 'SGA_v2.0_scaffold90G27888' => 'sas', 'SHI08601' => 'shi', 'SHI08606' => 'shi', 'SHI17117' => 'shi', 'SHI17119' => 'shi', 'SMO118G0201' => 'smo', 'SMO169G0247' => 'smo', 'SMO176G0006' => 'smo', 'SMO176G0015' => 'smo', 'SMO202G0006' => 'smo', 'SMO240G0050' => 'smo', 'SMO286G0009' => 'smo', 'SMO338G0033' => 'smo', 'SMO356G0533' => 'smo', 'SMO364G0382' => 'smo', 'SMO367G0166' => 'smo', 'SMO367G1098' => 'smo', 'Solyc01g009920.3' => 'sly', 'Solyc01g099300.3' => 'sly', 'Solyc02g084700.3' => 'sly', 'Solyc03g097520.3' => 'sly', 'Solyc06g071580.3' => 'sly', 'Solyc10g081760.3' => 'sly', 'Sopen01g005480' => 'spe', 'Sopen01g042850' => 'spe', 'Sopen02g029370' => 'spe', 'Sopen03g028280' => 'spe', 'Sopen06g027870' => 'spe', 'Sopen10g032270' => 'spe', 'Sp5g18180' => 'spa', 'Sp6g12880' => 'spa', 'Sp6g30850' => 'spa', 'Sp7g22960' => 'spa', 'Sp7g34010' => 'spa', 'SpUn1326_0010' => 'spa', 'TAR371G0242' => 'tar', 'TAR622G0638' => 'tar', 'TAR628G1548' => 'tar', 'TAR629G1079' => 'tar', 'TAR629G3413' => 'tar', 'THA.LOC104804249' => 'tha', 'THA.LOC104808315' => 'tha', 'THA.LOC104809238' => 'tha', 'THA.LOC104825484' => 'tha', 'Thecc.01G025500' => 'tca', 'Thecc.03G015800' => 'tca', 'Thecc.03G018000' => 'tca', 'Thecc.03G134800' => 'tca', 'Thecc.04G014700' => 'tca', 'Thhalv10006991m.g' => 'esa', 'Thhalv10012707m.g' => 'esa', 'Thhalv10015739m.g' => 'esa', 'Thhalv10024553m.g' => 'esa', 'Thhalv10024673m.g' => 'esa', 'Thhalv10029187m.g' => 'esa', 'TPR.G12971' => 'tpr', 'TPR.G29396' => 'tpr', 'TPR.G33376' => 'tpr', 'TPR.G35508' => 'tpr', 'TPR.G35516' => 'tpr', 'TPR.G37317' => 'tpr', 'TPR.G37389' => 'tpr', 'TPR.G37523' => 'tpr', 'TPR.G559' => 'tpr', 'TWI14G0070' => 'twi', 'TWI14G0729' => 'twi', 'TWI18G0596' => 'twi', 'TWI39G0780' => 'twi', 'TWI39G0850' => 'twi', 'TWI73G1052' => 'twi', 'unitig_52.g17485' => 'ugi', 'unitig_61.g26355' => 'ugi', 'vmacro01040' => 'vma', 'vmacro16731' => 'vma', 'vmacro18270' => 'vma', 'vmacro19142' => 'vma', 'vmacro19407' => 'vma', 'vmacro19408' => 'vma', 'vmacro21899' => 'vma', 'vmacro21900' => 'vma', 'vmacro21901' => 'vma', 'VMungo0251G0490' => 'vmu', 'VMungo0251G1748' => 'vmu', 'VMungo1309G0421' => 'vmu', 'Zm00001eb086500' => 'zma', 'Zm00001eb150680' => 'zma', 'Zm00001eb162330' => 'zma', 'Zm00001eb203130' => 'zma', 'Zm00001eb369480' => 'zma', 'Zm00001eb382340' => 'zma', 'Zm00001eb416360' => 'zma' ), 'gf_id' => 'HOM05D000902', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000902' ), 'data_identifier' => 'HOM05D000902', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000902', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '663', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02470' => 'bna', 'A01p16260' => 'bna', 'A02p01680' => 'bna', 'A03p16600' => 'bna', 'A03p55660' => 'bna', 'A03p64160' => 'bna', 'A03p64170' => 'bna', 'A08p31900' => 'bna', 'A09p59530' => 'bna', 'A10p08230' => 'bna', 'A10p25090' => 'bna', 'Aa31LG3G7100' => 'aar', 'Aa31LG3G7110' => 'aar', 'Aa31LG6G13160' => 'aar', 'Aa31LG7G10770' => 'aar', 'Aa31LG7G3830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2723' => 'aag', 'Actinidia08045' => 'ach', 'Actinidia08888' => 'ach', 'Actinidia18333' => 'ach', 'Actinidia19334' => 'ach', 'Actinidia25552' => 'ach', 'Actinidia26089' => 'ach', 'Actinidia30615' => 'ach', 'Actinidia30616' => 'ach', 'Actinidia33083' => 'ach', 'Actinidia35762' => 'ach', 'Ah.02g110620' => 'amhyb', 'Ah.11g046390' => 'amhyb', 'AL1G31670' => 'aly', 'AL6G23730' => 'aly', 'AL7G14740' => 'aly', 'AL7G14750' => 'aly', 'AL7G14760' => 'aly', 'AL7G28220' => 'aly', 'AL8G24940' => 'aly', 'Aqoxy3G01665' => 'aox', 'Aqoxy3G02853' => 'aox', 'Aqoxy5G01513' => 'aox', 'Aqoxy5G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8SKA4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ75LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKDA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0LJZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7REX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZP4YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWX7I5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2QKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS0L9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPCD8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q161UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC7XCF' => 'arhy', 'AT1G19100' => 'ath', 'AT4G24970' => 'ath', 'AT4G36270' => 'ath', 'AT4G36280' => 'ath', 'AT4G36290' => 'ath', 'AT5G13130' => 'ath', 'AT5G50780' => 'ath', 'ATR0582G266' => 'atr', 'ATR0661G195' => 'atr', 'ATR1152G031' => 'atr', 'Atru.chr11.2382' => 'acertr', 'Atru.chr12.2337' => 'acertr', 'Atru.chr3.744' => 'acertr', 'Atru.chr6.1870' => 'acertr', 'Atru.chr9.2515' => 'acertr', 'AUR62004120' => 'cqu', 'AUR62005667' => 'cqu', 'AUR62007634' => 'cqu', 'AUR62008186' => 'cqu', 'AUR62008187' => 'cqu', 'AUR62008188' => 'cqu', 'AUR62027954' => 'cqu', 'AUR62028766' => 'cqu', 'AUR62028767' => 'cqu', 'AUR62028768' => 'cqu', 'AUR62028886' => 'cqu', 'AUR62029563' => 'cqu', 'AUR62038832' => 'cqu', 'BcaB01g04149' => 'bca', 'BcaB03g12940' => 'bca', 'BcaB03g13090' => 'bca', 'BcaB03g14466' => 'bca', 'BcaB05g24035' => 'bca', 'BcaC01g06050' => 'bca', 'BcaC04g19148' => 'bca', 'BcaC04g20761' => 'bca', 'BcaC06g32845' => 'bca', 'BcaC07g41274' => 'bca', 'BcaC09g50827' => 'bca', 'BcaNung00741' => 'bca', 'BcaNung00742' => 'bca', 'BcaNung01859' => 'bca', 'BcaNung03985' => 'bca', 'BcaNung03989' => 'bca', 'BcaNung05661' => 'bca', 'BolC1t00257H' => 'bol', 'BolC1t01956H' => 'bol', 'BolC2t06534H' => 'bol', 'BolC3t14334H' => 'bol', 'BolC5t30451H' => 'bol', 'BolC7t45880H' => 'bol', 'BolC7t46586H' => 'bol', 'BolC8t49301H' => 'bol', 'BolC8t51837H' => 'bol', 'BolC9t56822H' => 'bol', 'BolC9t59235H' => 'bol', 'BraA01t00234Z' => 'bra', 'BraA01t01563Z' => 'bra', 'BraA02t05147Z' => 'bra', 'BraA03t10947Z' => 'bra', 'BraA03t14633Z' => 'bra', 'BraA08t35112Z' => 'bra', 'BraA09t41330Z' => 'bra', 'BraA10t44570Z' => 'bra', 'C01p02670' => 'bna', 'C01p20260' => 'bna', 'C02p05890' => 'bna', 'C03p19530' => 'bna', 'C05p17470' => 'bna', 'C07p53900' => 'bna', 'C07p61630' => 'bna', 'C08p16800' => 'bna', 'C08p42810' => 'bna', 'C09p39480' => 'bna', 'C09p63980' => 'bna', 'CAN.G1001.7' => 'can', 'CAN.G1034.55' => 'can', 'CAN.G143.7' => 'can', 'CAN.G3340.1' => 'can', 'CAN.G358.19' => 'can', 'CAN.G373.2' => 'can', 'CAN.G674.16' => 'can', 'CAN.G674.17' => 'can', 'CAN.G674.18' => 'can', 'CAN.G732.2' => 'can', 'CAN.G732.3' => 'can', 'CAN.G993.39' => 'can', 'CANSAT01G2052' => 'cansat', 'CANSAT80G0070' => 'cansat', 'CANSAT80G0483' => 'cansat', 'CANSAT80G0625' => 'cansat', 'CARHR019690' => 'chi', 'CARHR080280' => 'chi', 'CARHR152750' => 'chi', 'CARHR152760' => 'chi', 'CARHR152770' => 'chi', 'CARHR200340' => 'chi', 'CARHR232370' => 'chi', 'CARHR244670' => 'chi', 'CARHR244680' => 'chi', 'CARHR257520' => 'chi', 'Carub.0001s1872' => 'cru', 'Carub.0006s1130' => 'cru', 'Carub.0007s0396' => 'cru', 'Carub.0007s0397' => 'cru', 'Carub.0007s1608' => 'cru', 'Carub.0008s1068' => 'cru', 'Carub.0008s1077' => 'cru', 'Ca_16158_v3' => 'car', 'Ca_17571_v3' => 'car', 'Ca_21936_v3' => 'car', 'Ca_22350_v3' => 'car', 'CBR_g22445' => 'cbr', 'CBR_g26290' => 'cbr', 'Cc04_g09610' => 'ccan', 'Cc04_g12280' => 'ccan', 'Cc07_g10230' => 'ccan', 'CDE02G0093' => 'cde', 'CDE02G0701' => 'cde', 'CDE04G1050' => 'cde', 'CDE05G1833' => 'cde', 'CDE05G3058' => 'cde', 'CDE05G3380' => 'cde', 'CDE06G0536' => 'cde', 'Cfa006923' => 'cfa', 'Cfa009402' => 'cfa', 'Cfa018751' => 'cfa', 'Cfa019164' => 'cfa', 'Cfa022935' => 'cfa', 'Ciclev10019081m.g' => 'ccl', 'Ciclev10025076m.g' => 'ccl', 'Ciclev10030712m.g' => 'ccl', 'Ciclev10033760m.g' => 'ccl', 'CiPaw.05G105600' => 'cil', 'CiPaw.08G136700' => 'cil', 'CiPaw.11G003900' => 'cil', 'CiPaw.11G023700' => 'cil', 'CiPaw.12G003700' => 'cil', 'ClCG06G017100' => 'cla', 'ClCG06G018110' => 'cla', 'ClCG07G008800' => 'cla', 'ClCG07G015330' => 'cla', 'COL.COLO4_13698' => 'col', 'COL.COLO4_16659' => 'col', 'COL.COLO4_21986' => 'col', 'COL.COLO4_24049' => 'col', 'COL.COLO4_29061' => 'col', 'COL.COLO4_29075' => 'col', 'COL.COLO4_30094' => 'col', 'Cpa.g.c33689' => 'cpa', 'Cpa.g.sc108.39' => 'cpa', 'Cpa.g.sc108.41' => 'cpa', 'Cpa.g.sc1163.1' => 'cpa', 'Cpa.g.sc4.155' => 'cpa', 'Cpa.g.sc6.194' => 'cpa', 'CsaV3_1G000340' => 'csa', 'CsaV3_1G001400' => 'csa', 'CsaV3_4G002220' => 'csa', 'CsaV3_4G005370' => 'csa', 'CSS0007487' => 'camsi', 'CSS0008066' => 'camsi', 'CSS0009120' => 'camsi', 'CSS0015512' => 'camsi', 'CSS0022409' => 'camsi', 'CSS0025358' => 'camsi', 'CSS0044547' => 'camsi', 'DCAR_013057' => 'dca', 'DCAR_015058' => 'dca', 'DCAR_016027' => 'dca', 'DCAR_017327' => 'dca', 'DCAR_020743' => 'dca', 'DCAR_026157' => 'dca', 'DCAR_032339' => 'dca', 'DCAR_032340' => 'dca', 'Dinv11200' => 'din', 'Dinv11201' => 'din', 'Dinv20631' => 'din', 'Dinv23182' => 'din', 'Dinv33466' => 'din', 'Dinv33583' => 'din', 'Dinv38565' => 'din', 'Duzib068G0200' => 'dzi', 'Duzib147G0132' => 'dzi', 'Duzib147G0635' => 'dzi', 'Duzib205G1670' => 'dzi', 'Duzib251G0606' => 'dzi', 'ECA232G3336' => 'eca', 'ECA232G3763' => 'eca', 'ECA232G4845' => 'eca', 'ECA234G1607' => 'eca', 'ECA246G0932' => 'eca', 'ECA247G0781' => 'eca', 'ECA247G1932' => 'eca', 'ECA247G2079' => 'eca', 'ECA247G3338' => 'eca', 'ECA247G4115' => 'eca', 'EL10Ac3g06552' => 'bvu', 'EL10Ac5g10721' => 'bvu', 'EL10Ac5g10722' => 'bvu', 'EL10Ac5g10723' => 'bvu', 'EL10Ac5g11361' => 'bvu', 'EL10Ac6g13553' => 'bvu', 'EL10As8g23872' => 'bvu', 'Eucgr.B00250' => 'egr', 'Eucgr.B00251' => 'egr', 'Eucgr.B03533' => 'egr', 'Eucgr.I02381' => 'egr', 'Eucgr.K02700' => 'egr', 'FAN02G0174' => 'fan', 'FAN02G3146' => 'fan', 'FAN04G1672' => 'fan', 'FAN04G2273' => 'fan', 'FAN05G2791' => 'fan', 'FAN05G4035' => 'fan', 'FAN07G0834' => 'fan', 'FAN08G1198' => 'fan', 'FAN09G4182' => 'fan', 'FAN12G0496' => 'fan', 'FAN13G1027' => 'fan', 'FAN13G2951' => 'fan', 'FAN14G0705' => 'fan', 'FAN14G0720' => 'fan', 'FAN17G0201' => 'fan', 'FAN17G2665' => 'fan', 'FAN18G1456' => 'fan', 'FAN18G1525' => 'fan', 'FAN18G3500' => 'fan', 'FAN28G2670' => 'fan', 'FvH4_1g12391' => 'fve', 'FvH4_4g23220' => 'fve', 'FvH4_5g08810' => 'fve', 'FvH4_5g28960' => 'fve', 'FvH4_6g42820' => 'fve', 'FvH4_6g51110' => 'fve', 'Glyma.02G051802' => 'gma', 'Glyma.04G185300' => 'gma', 'Glyma.05G202900' => 'gma', 'Glyma.08G010300' => 'gma', 'Glyma.16G131900' => 'gma', 'Glyma.17G087900' => 'gma', 'Gohir.A07G048600' => 'ghi', 'Gohir.A11G179000' => 'ghi', 'Gohir.A12G140900' => 'ghi', 'Gohir.A12G140950' => 'ghi', 'Gohir.A12G191700' => 'ghi', 'Gohir.A13G086300' => 'ghi', 'Gohir.D07G052900' => 'ghi', 'Gohir.D11G186600' => 'ghi', 'Gohir.D12G145575' => 'ghi', 'Gohir.D12G145650' => 'ghi', 'Gohir.D12G145725' => 'ghi', 'Gohir.D12G194050' => 'ghi', 'Gohir.D13G091800' => 'ghi', 'Gorai.001G055900' => 'gra', 'Gorai.007G198400' => 'gra', 'Gorai.008G157000' => 'gra', 'Gorai.008G157100' => 'gra', 'Gorai.008G208700' => 'gra', 'Gorai.010G138700' => 'gra', 'GSVIVG01000977001' => 'vvi', 'GSVIVG01007708001' => 'vvi', 'GSVIVG01008587001' => 'vvi', 'GSVIVG01018849001' => 'vvi', 'GSVIVG01032432001' => 'vvi', 'HanXRQChr02g0034131' => 'han', 'HanXRQChr02g0035981' => 'han', 'HanXRQChr02g0035991' => 'han', 'HanXRQChr05g0155611' => 'han', 'HanXRQChr05g0155621' => 'han', 'HanXRQChr08g0236501' => 'han', 'HanXRQChr09g0261321' => 'han', 'HanXRQChr09g0272081' => 'han', 'HanXRQChr10g0310741' => 'han', 'HanXRQChr11g0325591' => 'han', 'HanXRQChr12g0385691' => 'han', 'HanXRQChr13g0387801' => 'han', 'HanXRQChr15g0463011' => 'han', 'Haze_03826' => 'cav', 'Haze_03827' => 'cav', 'Haze_07183' => 'cav', 'Haze_07537' => 'cav', 'Haze_07539' => 'cav', 'Haze_12461' => 'cav', 'Haze_16115' => 'cav', 'Haze_16808' => 'cav', 'Haze_18531' => 'cav', 'Hma1.2p1_0046F.1_g026700' => 'hma', 'Hma1.2p1_0046F.1_g026710' => 'hma', 'Hma1.2p1_0168F.1_g074340' => 'hma', 'Hma1.2p1_0266F.1_g107030' => 'hma', 'Hma1.2p1_0266F.1_g107060' => 'hma', 'Hma1.2p1_0275F.1_g110510' => 'hma', 'Hma1.2p1_0592F.1_g185490' => 'hma', 'Hma1.2p1_0592F.1_g185500' => 'hma', 'Hma1.2p1_0592F.1_g185510' => 'hma', 'Hma1.2p1_0592F.1_g185520' => 'hma', 'Hma1.2p1_0592F.1_g185530' => 'hma', 'Hma1.2p1_0818F.1_g223450' => 'hma', 'HPP92_009708' => 'vpl', 'HPP92_009793' => 'vpl', 'HPP92_009796' => 'vpl', 'HPP92_009797' => 'vpl', 'HPP92_014940' => 'vpl', 'HPP92_014988' => 'vpl', 'Hund02463' => 'sun', 'Hund02760' => 'sun', 'Hund05071' => 'sun', 'Hund10108' => 'sun', 'Hund11204' => 'sun', 'Hund14016' => 'sun', 'Hund16464' => 'sun', 'Lalb_Chr09g0333391' => 'lal', 'Lalb_Chr11g0070461' => 'lal', 'Lalb_Chr12g0201671' => 'lal', 'Lalb_Chr13g0297161' => 'lal', 'Lj1g0002823' => 'lja', 'Lj3C1074T6' => 'lonja', 'Lj4A212T28' => 'lonja', 'Lj4g0005516' => 'lja', 'Lj4g0013705' => 'lja', 'Lj4g0027865' => 'lja', 'Lj5C92G16' => 'lonja', 'Lj5C92T12' => 'lonja', 'Lj7C596T3' => 'lonja', 'Lj9A446G59' => 'lonja', 'Lj9A482G21' => 'lonja', 'Lsat_1_v5_gn_1_28261' => 'lsa', 'Lsat_1_v5_gn_1_28281' => 'lsa', 'Lsat_1_v5_gn_1_32721' => 'lsa', 'Lsat_1_v5_gn_4_151760' => 'lsa', 'Lsat_1_v5_gn_4_2120' => 'lsa', 'Lsat_1_v5_gn_4_75761' => 'lsa', 'Lsat_1_v5_gn_5_10920' => 'lsa', 'Manes.02G099900' => 'mes', 'Manes.11G096200' => 'mes', 'Manes.12G007200' => 'mes', 'Manes.14G048300' => 'mes', 'Manes.17G114700' => 'mes', 'Mapoly0002s0070' => 'mpo', 'Mapoly0029s0099' => 'mpo', 'MBI07_g24742_MAGBIO' => 'mbi', 'MBI10_g27988_MAGBIO' => 'mbi', 'MBI11_g13057_MAGBIO' => 'mbi', 'MD02G1137200' => 'mdo', 'MD06G1137200' => 'mdo', 'MD07G1122300' => 'mdo', 'MD09G1078200' => 'mdo', 'MD13G1123700' => 'mdo', 'MD14G1151900' => 'mdo', 'MD17G1030900' => 'mdo', 'MD17G1068200' => 'mdo', 'MD17G1068600' => 'mdo', 'Medtr3g077540' => 'mtr', 'Medtr4g105530' => 'mtr', 'Medtr8g076580' => 'mtr', 'Medtr8g076590' => 'mtr', 'Medtr8g096410' => 'mtr', 'MELO3C016411.2' => 'cme', 'MELO3C017780.2' => 'cme', 'MELO3C022560.2' => 'cme', 'MELO3C026187.2' => 'cme', 'MELO3C026286.2' => 'cme', 'MELO3C032854.2' => 'cme', 'Migut.H02495' => 'egut', 'Migut.I00561' => 'egut', 'Migut.K01015' => 'egut', 'Migut.K01016' => 'egut', 'Migut.L00743' => 'egut', 'Migut.L00744' => 'egut', 'Migut.L00746' => 'egut', 'Migut.L00798' => 'egut', 'Migut.L00799' => 'egut', 'Migut.N02096' => 'egut', 'MSTRG.11259' => 'ama', 'MSTRG.23142' => 'ama', 'MSTRG.2499' => 'ama', 'Nitab4.5_0000003g0730' => 'nta', 'Nitab4.5_0000137g0020' => 'nta', 'Nitab4.5_0000721g0210' => 'nta', 'Nitab4.5_0000723g0050' => 'nta', 'Nitab4.5_0000913g0070' => 'nta', 'Nitab4.5_0001332g0040' => 'nta', 'Nitab4.5_0001771g0050' => 'nta', 'Nitab4.5_0001918g0050' => 'nta', 'Nitab4.5_0002686g0030' => 'nta', 'Nitab4.5_0003156g0020' => 'nta', 'Nitab4.5_0003383g0040' => 'nta', 'Nitab4.5_0003918g0010' => 'nta', 'Nitab4.5_0006760g0010' => 'nta', 'Nn1g05981' => 'nnu', 'Nn1g06288' => 'nnu', 'Nn3g16371' => 'nnu', 'Nn3g16786' => 'nnu', 'Nn4g22232' => 'nnu', 'Oeu005144.1' => 'oeu', 'Oeu005145.1' => 'oeu', 'Oeu011348.1' => 'oeu', 'Oeu016415.1' => 'oeu', 'Oeu023501.1' => 'oeu', 'Oeu044473.1' => 'oeu', 'Oeu048892.2' => 'oeu', 'Os01g0549200' => 'osa', 'Os02g0469300' => 'osa', 'Os04g0311100' => 'osa', 'Os06g0474900' => 'osa', 'Os10g0181700' => 'osa', 'Os11g0454800' => 'osa', 'Peaxi162Scf00037g00714' => 'pax', 'Peaxi162Scf00084g01217' => 'pax', 'Peaxi162Scf00257g00217' => 'pax', 'Peaxi162Scf00516g00215' => 'pax', 'Peaxi162Scf00689g00123' => 'pax', 'PGR044G2719' => 'pgr', 'PGR083G1360' => 'pgr', 'PGR102G2849' => 'pgr', 'PGR119G2534' => 'pgr', 'PGSC0003DMG400003538' => 'stu', 'PGSC0003DMG400028138' => 'stu', 'PGSC0003DMG400031732' => 'stu', 'PGSC0003DMG400038165' => 'stu', 'Phvul.002G284600' => 'pvu', 'Phvul.003G258200' => 'pvu', 'Phvul.009G176500' => 'pvu', 'Potri.003G167201' => 'ptr', 'Potri.005G118400' => 'ptr', 'Potri.012G089000' => 'ptr', 'Potri.012G102800' => 'ptr', 'Potri.015G079400' => 'ptr', 'Potri.015G100900' => 'ptr', 'Pp3c14_9810' => 'ppa', 'Pp3c15_10450' => 'ppa', 'Pp3c20_19150' => 'ppa', 'Pp3c23_12740' => 'ppa', 'Pp3c23_6310' => 'ppa', 'Pp3c24_3720' => 'ppa', 'Pp3c27_2580' => 'ppa', 'Pp3c9_8990' => 'ppa', 'PRCOL_00002854' => 'pco', 'Prupe.1G221200' => 'ppe', 'Prupe.3G289000' => 'ppe', 'Prupe.5G147000' => 'ppe', 'Prupe.6G157300' => 'ppe', 'Prupe.7G163400' => 'ppe', 'Psat0s2177g0040' => 'psa', 'Psat3g174760' => 'psa', 'Psat3g192160' => 'psa', 'Psat4g058520' => 'psa', 'Psat4g096840' => 'psa', 'Psat7g037320' => 'psa', 'PSO017G1274' => 'pso', 'PSO017G5166' => 'pso', 'PSO063G4558' => 'pso', 'PSO170G4458' => 'pso', 'PSO170G5005' => 'pso', 'PSO210G6156' => 'pso', 'PSO210G6635' => 'pso', 'PSO210G7397' => 'pso', 'PSO210G7700' => 'pso', 'PSO455G0035' => 'pso', 'PSO455G0180' => 'pso', 'PSO478G4515' => 'pso', 'PSO832G1305' => 'pso', 'PSO832G3489' => 'pso', 'QL02p075247' => 'qlo', 'QL03p051148' => 'qlo', 'QL05p010313' => 'qlo', 'QL06p034627' => 'qlo', 'QL10p001889' => 'qlo', 'QL10p010846' => 'qlo', 'RcHm_v2.0_Chr1g0350621' => 'rch', 'RcHm_v2.0_Chr1g0350641' => 'rch', 'RcHm_v2.0_Chr2g0092891' => 'rch', 'RcHm_v2.0_Chr2g0100251' => 'rch', 'RcHm_v2.0_Chr2g0158661' => 'rch', 'RcHm_v2.0_Chr2g0172741' => 'rch', 'RcHm_v2.0_Chr4g0429571' => 'rch', 'RcHm_v2.0_Chr5g0042471' => 'rch', 'RcHm_v2.0_Chr7g0189451' => 'rch', 'Rhsim08G0052000' => 'rsi', 'Rhsim08G0174400' => 'rsi', 'Rhsim08G0193200' => 'rsi', 'Rhsim10G0214800' => 'rsi', 'Rhsim10G0214900' => 'rsi', 'Rhsim10G0215000' => 'rsi', 'Rhsim12G0022900' => 'rsi', 'Rhsim12G0177500' => 'rsi', 'Rhsim12G0177700' => 'rsi', 'Sabra03G0122600' => 'sbr', 'Sabra05G0097400' => 'sbr', 'Sabra12G0064100' => 'sbr', 'Sabra15G0121300' => 'sbr', 'SalBow2G0642' => 'sbo', 'SalBow5G2667' => 'sbo', 'SalBow5G4873' => 'sbo', 'SalBow8G2395' => 'sbo', 'Sc03g0003290' => 'sci', 'Sc10g0010130' => 'sci', 'Sc22g0003650' => 'sci', 'Sed0001603' => 'sed', 'Sed0004259' => 'sed', 'Sed0006789' => 'sed', 'Sed0011838' => 'sed', 'Sed0012964' => 'sed', 'Sed0016383' => 'sed', 'Sed0019010' => 'sed', 'Sed0020188' => 'sed', 'SEGI_04702' => 'sgi', 'SEGI_17231' => 'sgi', 'SEGI_18877' => 'sgi', 'SEGI_25196' => 'sgi', 'SEGI_25515' => 'sgi', 'SEGI_28445' => 'sgi', 'SEGI_37452' => 'sgi', 'SGA_v2.0_scaffold188G40336' => 'sas', 'SGA_v2.0_scaffold228G43247' => 'sas', 'SGA_v2.0_scaffold280G46853' => 'sas', 'SGA_v2.0_scaffold34G13808' => 'sas', 'SGA_v2.0_scaffold40G15576' => 'sas', 'SGA_v2.0_scaffold611G53188' => 'sas', 'SGA_v2.0_scaffold78G25461' => 'sas', 'SGA_v2.0_scaffold90G27888' => 'sas', 'SHI08601' => 'shi', 'SHI08606' => 'shi', 'SHI17117' => 'shi', 'SHI17119' => 'shi', 'SMO118G0201' => 'smo', 'SMO169G0247' => 'smo', 'SMO176G0006' => 'smo', 'SMO176G0015' => 'smo', 'SMO202G0006' => 'smo', 'SMO240G0050' => 'smo', 'SMO286G0009' => 'smo', 'SMO338G0033' => 'smo', 'SMO356G0533' => 'smo', 'SMO364G0382' => 'smo', 'SMO367G0166' => 'smo', 'SMO367G1098' => 'smo', 'Solyc01g009920.3' => 'sly', 'Solyc01g099300.3' => 'sly', 'Solyc02g084700.3' => 'sly', 'Solyc03g097520.3' => 'sly', 'Solyc06g071580.3' => 'sly', 'Solyc10g081760.3' => 'sly', 'Sopen01g005480' => 'spe', 'Sopen01g042850' => 'spe', 'Sopen02g029370' => 'spe', 'Sopen03g028280' => 'spe', 'Sopen06g027870' => 'spe', 'Sopen10g032270' => 'spe', 'Sp5g18180' => 'spa', 'Sp6g12880' => 'spa', 'Sp6g30850' => 'spa', 'Sp7g22960' => 'spa', 'Sp7g34010' => 'spa', 'SpUn1326_0010' => 'spa', 'TAR371G0242' => 'tar', 'TAR622G0638' => 'tar', 'TAR628G1548' => 'tar', 'TAR629G1079' => 'tar', 'TAR629G3413' => 'tar', 'THA.LOC104804249' => 'tha', 'THA.LOC104808315' => 'tha', 'THA.LOC104809238' => 'tha', 'THA.LOC104825484' => 'tha', 'Thecc.01G025500' => 'tca', 'Thecc.03G015800' => 'tca', 'Thecc.03G018000' => 'tca', 'Thecc.03G134800' => 'tca', 'Thecc.04G014700' => 'tca', 'Thhalv10006991m.g' => 'esa', 'Thhalv10012707m.g' => 'esa', 'Thhalv10015739m.g' => 'esa', 'Thhalv10024553m.g' => 'esa', 'Thhalv10024673m.g' => 'esa', 'Thhalv10029187m.g' => 'esa', 'TPR.G12971' => 'tpr', 'TPR.G29396' => 'tpr', 'TPR.G33376' => 'tpr', 'TPR.G35508' => 'tpr', 'TPR.G35516' => 'tpr', 'TPR.G37317' => 'tpr', 'TPR.G37389' => 'tpr', 'TPR.G37523' => 'tpr', 'TPR.G559' => 'tpr', 'TWI14G0070' => 'twi', 'TWI14G0729' => 'twi', 'TWI18G0596' => 'twi', 'TWI39G0780' => 'twi', 'TWI39G0850' => 'twi', 'TWI73G1052' => 'twi', 'unitig_52.g17485' => 'ugi', 'unitig_61.g26355' => 'ugi', 'vmacro01040' => 'vma', 'vmacro16731' => 'vma', 'vmacro18270' => 'vma', 'vmacro19142' => 'vma', 'vmacro19407' => 'vma', 'vmacro19408' => 'vma', 'vmacro21899' => 'vma', 'vmacro21900' => 'vma', 'vmacro21901' => 'vma', 'VMungo0251G0490' => 'vmu', 'VMungo0251G1748' => 'vmu', 'VMungo1309G0421' => 'vmu', 'Zm00001eb086500' => 'zma', 'Zm00001eb150680' => 'zma', 'Zm00001eb162330' => 'zma', 'Zm00001eb203130' => 'zma', 'Zm00001eb369480' => 'zma', 'Zm00001eb382340' => 'zma', 'Zm00001eb416360' => 'zma' ) $gf_id = 'HOM05D000902' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000902' ) $data_identifier = 'HOM05D000902' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 13, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 10, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 6, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 9, 'hma' => (int) 12, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 4, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 6, 'ppa' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 6, 'rch' => (int) 9, 'rsi' => (int) 9, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 12, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 3, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416360' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000902', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '663', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02470' => 'bna', 'A01p16260' => 'bna', 'A02p01680' => 'bna', 'A03p16600' => 'bna', 'A03p55660' => 'bna', 'A03p64160' => 'bna', 'A03p64170' => 'bna', 'A08p31900' => 'bna', 'A09p59530' => 'bna', 'A10p08230' => 'bna', 'A10p25090' => 'bna', 'Aa31LG3G7100' => 'aar', 'Aa31LG3G7110' => 'aar', 'Aa31LG6G13160' => 'aar', 'Aa31LG7G10770' => 'aar', 'Aa31LG7G3830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2723' => 'aag', 'Actinidia08045' => 'ach', 'Actinidia08888' => 'ach', 'Actinidia18333' => 'ach', 'Actinidia19334' => 'ach', 'Actinidia25552' => 'ach', 'Actinidia26089' => 'ach', 'Actinidia30615' => 'ach', 'Actinidia30616' => 'ach', 'Actinidia33083' => 'ach', 'Actinidia35762' => 'ach', 'Ah.02g110620' => 'amhyb', 'Ah.11g046390' => 'amhyb', 'AL1G31670' => 'aly', 'AL6G23730' => 'aly', 'AL7G14740' => 'aly', 'AL7G14750' => 'aly', 'AL7G14760' => 'aly', 'AL7G28220' => 'aly', 'AL8G24940' => 'aly', 'Aqoxy3G01665' => 'aox', 'Aqoxy3G02853' => 'aox', 'Aqoxy5G01513' => 'aox', 'Aqoxy5G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8SKA4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ75LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKDA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0LJZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7REX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZP4YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWX7I5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2QKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS0L9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPCD8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q161UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC7XCF' => 'arhy', 'AT1G19100' => 'ath', 'AT4G24970' => 'ath', 'AT4G36270' => 'ath', 'AT4G36280' => 'ath', 'AT4G36290' => 'ath', 'AT5G13130' => 'ath', 'AT5G50780' => 'ath', 'ATR0582G266' => 'atr', 'ATR0661G195' => 'atr', 'ATR1152G031' => 'atr', 'Atru.chr11.2382' => 'acertr', 'Atru.chr12.2337' => 'acertr', 'Atru.chr3.744' => 'acertr', 'Atru.chr6.1870' => 'acertr', 'Atru.chr9.2515' => 'acertr', 'AUR62004120' => 'cqu', 'AUR62005667' => 'cqu', 'AUR62007634' => 'cqu', 'AUR62008186' => 'cqu', 'AUR62008187' => 'cqu', 'AUR62008188' => 'cqu', 'AUR62027954' => 'cqu', 'AUR62028766' => 'cqu', 'AUR62028767' => 'cqu', 'AUR62028768' => 'cqu', 'AUR62028886' => 'cqu', 'AUR62029563' => 'cqu', 'AUR62038832' => 'cqu', 'BcaB01g04149' => 'bca', 'BcaB03g12940' => 'bca', 'BcaB03g13090' => 'bca', 'BcaB03g14466' => 'bca', 'BcaB05g24035' => 'bca', 'BcaC01g06050' => 'bca', 'BcaC04g19148' => 'bca', 'BcaC04g20761' => 'bca', 'BcaC06g32845' => 'bca', 'BcaC07g41274' => 'bca', 'BcaC09g50827' => 'bca', 'BcaNung00741' => 'bca', 'BcaNung00742' => 'bca', 'BcaNung01859' => 'bca', 'BcaNung03985' => 'bca', 'BcaNung03989' => 'bca', 'BcaNung05661' => 'bca', 'BolC1t00257H' => 'bol', 'BolC1t01956H' => 'bol', 'BolC2t06534H' => 'bol', 'BolC3t14334H' => 'bol', 'BolC5t30451H' => 'bol', 'BolC7t45880H' => 'bol', 'BolC7t46586H' => 'bol', 'BolC8t49301H' => 'bol', 'BolC8t51837H' => 'bol', 'BolC9t56822H' => 'bol', 'BolC9t59235H' => 'bol', 'BraA01t00234Z' => 'bra', 'BraA01t01563Z' => 'bra', 'BraA02t05147Z' => 'bra', 'BraA03t10947Z' => 'bra', 'BraA03t14633Z' => 'bra', 'BraA08t35112Z' => 'bra', 'BraA09t41330Z' => 'bra', 'BraA10t44570Z' => 'bra', 'C01p02670' => 'bna', 'C01p20260' => 'bna', 'C02p05890' => 'bna', 'C03p19530' => 'bna', 'C05p17470' => 'bna', 'C07p53900' => 'bna', 'C07p61630' => 'bna', 'C08p16800' => 'bna', 'C08p42810' => 'bna', 'C09p39480' => 'bna', 'C09p63980' => 'bna', 'CAN.G1001.7' => 'can', 'CAN.G1034.55' => 'can', 'CAN.G143.7' => 'can', 'CAN.G3340.1' => 'can', 'CAN.G358.19' => 'can', 'CAN.G373.2' => 'can', 'CAN.G674.16' => 'can', 'CAN.G674.17' => 'can', 'CAN.G674.18' => 'can', 'CAN.G732.2' => 'can', 'CAN.G732.3' => 'can', 'CAN.G993.39' => 'can', 'CANSAT01G2052' => 'cansat', 'CANSAT80G0070' => 'cansat', 'CANSAT80G0483' => 'cansat', 'CANSAT80G0625' => 'cansat', 'CARHR019690' => 'chi', 'CARHR080280' => 'chi', 'CARHR152750' => 'chi', 'CARHR152760' => 'chi', 'CARHR152770' => 'chi', 'CARHR200340' => 'chi', 'CARHR232370' => 'chi', 'CARHR244670' => 'chi', 'CARHR244680' => 'chi', 'CARHR257520' => 'chi', 'Carub.0001s1872' => 'cru', 'Carub.0006s1130' => 'cru', 'Carub.0007s0396' => 'cru', 'Carub.0007s0397' => 'cru', 'Carub.0007s1608' => 'cru', 'Carub.0008s1068' => 'cru', 'Carub.0008s1077' => 'cru', 'Ca_16158_v3' => 'car', 'Ca_17571_v3' => 'car', 'Ca_21936_v3' => 'car', 'Ca_22350_v3' => 'car', 'CBR_g22445' => 'cbr', 'CBR_g26290' => 'cbr', 'Cc04_g09610' => 'ccan', 'Cc04_g12280' => 'ccan', 'Cc07_g10230' => 'ccan', 'CDE02G0093' => 'cde', 'CDE02G0701' => 'cde', 'CDE04G1050' => 'cde', 'CDE05G1833' => 'cde', 'CDE05G3058' => 'cde', 'CDE05G3380' => 'cde', 'CDE06G0536' => 'cde', 'Cfa006923' => 'cfa', 'Cfa009402' => 'cfa', 'Cfa018751' => 'cfa', 'Cfa019164' => 'cfa', 'Cfa022935' => 'cfa', 'Ciclev10019081m.g' => 'ccl', 'Ciclev10025076m.g' => 'ccl', 'Ciclev10030712m.g' => 'ccl', 'Ciclev10033760m.g' => 'ccl', 'CiPaw.05G105600' => 'cil', 'CiPaw.08G136700' => 'cil', 'CiPaw.11G003900' => 'cil', 'CiPaw.11G023700' => 'cil', 'CiPaw.12G003700' => 'cil', 'ClCG06G017100' => 'cla', 'ClCG06G018110' => 'cla', 'ClCG07G008800' => 'cla', 'ClCG07G015330' => 'cla', 'COL.COLO4_13698' => 'col', 'COL.COLO4_16659' => 'col', 'COL.COLO4_21986' => 'col', 'COL.COLO4_24049' => 'col', 'COL.COLO4_29061' => 'col', 'COL.COLO4_29075' => 'col', 'COL.COLO4_30094' => 'col', 'Cpa.g.c33689' => 'cpa', 'Cpa.g.sc108.39' => 'cpa', 'Cpa.g.sc108.41' => 'cpa', 'Cpa.g.sc1163.1' => 'cpa', 'Cpa.g.sc4.155' => 'cpa', 'Cpa.g.sc6.194' => 'cpa', 'CsaV3_1G000340' => 'csa', 'CsaV3_1G001400' => 'csa', 'CsaV3_4G002220' => 'csa', 'CsaV3_4G005370' => 'csa', 'CSS0007487' => 'camsi', 'CSS0008066' => 'camsi', 'CSS0009120' => 'camsi', 'CSS0015512' => 'camsi', 'CSS0022409' => 'camsi', 'CSS0025358' => 'camsi', 'CSS0044547' => 'camsi', 'DCAR_013057' => 'dca', 'DCAR_015058' => 'dca', 'DCAR_016027' => 'dca', 'DCAR_017327' => 'dca', 'DCAR_020743' => 'dca', 'DCAR_026157' => 'dca', 'DCAR_032339' => 'dca', 'DCAR_032340' => 'dca', 'Dinv11200' => 'din', 'Dinv11201' => 'din', 'Dinv20631' => 'din', 'Dinv23182' => 'din', 'Dinv33466' => 'din', 'Dinv33583' => 'din', 'Dinv38565' => 'din', 'Duzib068G0200' => 'dzi', 'Duzib147G0132' => 'dzi', 'Duzib147G0635' => 'dzi', 'Duzib205G1670' => 'dzi', 'Duzib251G0606' => 'dzi', 'ECA232G3336' => 'eca', 'ECA232G3763' => 'eca', 'ECA232G4845' => 'eca', 'ECA234G1607' => 'eca', 'ECA246G0932' => 'eca', 'ECA247G0781' => 'eca', 'ECA247G1932' => 'eca', 'ECA247G2079' => 'eca', 'ECA247G3338' => 'eca', 'ECA247G4115' => 'eca', 'EL10Ac3g06552' => 'bvu', 'EL10Ac5g10721' => 'bvu', 'EL10Ac5g10722' => 'bvu', 'EL10Ac5g10723' => 'bvu', 'EL10Ac5g11361' => 'bvu', 'EL10Ac6g13553' => 'bvu', 'EL10As8g23872' => 'bvu', 'Eucgr.B00250' => 'egr', 'Eucgr.B00251' => 'egr', 'Eucgr.B03533' => 'egr', 'Eucgr.I02381' => 'egr', 'Eucgr.K02700' => 'egr', 'FAN02G0174' => 'fan', 'FAN02G3146' => 'fan', 'FAN04G1672' => 'fan', 'FAN04G2273' => 'fan', 'FAN05G2791' => 'fan', 'FAN05G4035' => 'fan', 'FAN07G0834' => 'fan', 'FAN08G1198' => 'fan', 'FAN09G4182' => 'fan', 'FAN12G0496' => 'fan', 'FAN13G1027' => 'fan', 'FAN13G2951' => 'fan', 'FAN14G0705' => 'fan', 'FAN14G0720' => 'fan', 'FAN17G0201' => 'fan', 'FAN17G2665' => 'fan', 'FAN18G1456' => 'fan', 'FAN18G1525' => 'fan', 'FAN18G3500' => 'fan', 'FAN28G2670' => 'fan', 'FvH4_1g12391' => 'fve', 'FvH4_4g23220' => 'fve', 'FvH4_5g08810' => 'fve', 'FvH4_5g28960' => 'fve', 'FvH4_6g42820' => 'fve', 'FvH4_6g51110' => 'fve', 'Glyma.02G051802' => 'gma', 'Glyma.04G185300' => 'gma', 'Glyma.05G202900' => 'gma', 'Glyma.08G010300' => 'gma', 'Glyma.16G131900' => 'gma', 'Glyma.17G087900' => 'gma', 'Gohir.A07G048600' => 'ghi', 'Gohir.A11G179000' => 'ghi', 'Gohir.A12G140900' => 'ghi', 'Gohir.A12G140950' => 'ghi', 'Gohir.A12G191700' => 'ghi', 'Gohir.A13G086300' => 'ghi', 'Gohir.D07G052900' => 'ghi', 'Gohir.D11G186600' => 'ghi', 'Gohir.D12G145575' => 'ghi', 'Gohir.D12G145650' => 'ghi', 'Gohir.D12G145725' => 'ghi', 'Gohir.D12G194050' => 'ghi', 'Gohir.D13G091800' => 'ghi', 'Gorai.001G055900' => 'gra', 'Gorai.007G198400' => 'gra', 'Gorai.008G157000' => 'gra', 'Gorai.008G157100' => 'gra', 'Gorai.008G208700' => 'gra', 'Gorai.010G138700' => 'gra', 'GSVIVG01000977001' => 'vvi', 'GSVIVG01007708001' => 'vvi', 'GSVIVG01008587001' => 'vvi', 'GSVIVG01018849001' => 'vvi', 'GSVIVG01032432001' => 'vvi', 'HanXRQChr02g0034131' => 'han', 'HanXRQChr02g0035981' => 'han', 'HanXRQChr02g0035991' => 'han', 'HanXRQChr05g0155611' => 'han', 'HanXRQChr05g0155621' => 'han', 'HanXRQChr08g0236501' => 'han', 'HanXRQChr09g0261321' => 'han', 'HanXRQChr09g0272081' => 'han', 'HanXRQChr10g0310741' => 'han', 'HanXRQChr11g0325591' => 'han', 'HanXRQChr12g0385691' => 'han', 'HanXRQChr13g0387801' => 'han', 'HanXRQChr15g0463011' => 'han', 'Haze_03826' => 'cav', 'Haze_03827' => 'cav', 'Haze_07183' => 'cav', 'Haze_07537' => 'cav', 'Haze_07539' => 'cav', 'Haze_12461' => 'cav', 'Haze_16115' => 'cav', 'Haze_16808' => 'cav', 'Haze_18531' => 'cav', 'Hma1.2p1_0046F.1_g026700' => 'hma', 'Hma1.2p1_0046F.1_g026710' => 'hma', 'Hma1.2p1_0168F.1_g074340' => 'hma', 'Hma1.2p1_0266F.1_g107030' => 'hma', 'Hma1.2p1_0266F.1_g107060' => 'hma', 'Hma1.2p1_0275F.1_g110510' => 'hma', 'Hma1.2p1_0592F.1_g185490' => 'hma', 'Hma1.2p1_0592F.1_g185500' => 'hma', 'Hma1.2p1_0592F.1_g185510' => 'hma', 'Hma1.2p1_0592F.1_g185520' => 'hma', 'Hma1.2p1_0592F.1_g185530' => 'hma', 'Hma1.2p1_0818F.1_g223450' => 'hma', 'HPP92_009708' => 'vpl', 'HPP92_009793' => 'vpl', 'HPP92_009796' => 'vpl', 'HPP92_009797' => 'vpl', 'HPP92_014940' => 'vpl', 'HPP92_014988' => 'vpl', 'Hund02463' => 'sun', 'Hund02760' => 'sun', 'Hund05071' => 'sun', 'Hund10108' => 'sun', 'Hund11204' => 'sun', 'Hund14016' => 'sun', 'Hund16464' => 'sun', 'Lalb_Chr09g0333391' => 'lal', 'Lalb_Chr11g0070461' => 'lal', 'Lalb_Chr12g0201671' => 'lal', 'Lalb_Chr13g0297161' => 'lal', 'Lj1g0002823' => 'lja', 'Lj3C1074T6' => 'lonja', 'Lj4A212T28' => 'lonja', 'Lj4g0005516' => 'lja', 'Lj4g0013705' => 'lja', 'Lj4g0027865' => 'lja', 'Lj5C92G16' => 'lonja', 'Lj5C92T12' => 'lonja', 'Lj7C596T3' => 'lonja', 'Lj9A446G59' => 'lonja', 'Lj9A482G21' => 'lonja', 'Lsat_1_v5_gn_1_28261' => 'lsa', 'Lsat_1_v5_gn_1_28281' => 'lsa', 'Lsat_1_v5_gn_1_32721' => 'lsa', 'Lsat_1_v5_gn_4_151760' => 'lsa', 'Lsat_1_v5_gn_4_2120' => 'lsa', 'Lsat_1_v5_gn_4_75761' => 'lsa', 'Lsat_1_v5_gn_5_10920' => 'lsa', 'Manes.02G099900' => 'mes', 'Manes.11G096200' => 'mes', 'Manes.12G007200' => 'mes', 'Manes.14G048300' => 'mes', 'Manes.17G114700' => 'mes', 'Mapoly0002s0070' => 'mpo', 'Mapoly0029s0099' => 'mpo', 'MBI07_g24742_MAGBIO' => 'mbi', 'MBI10_g27988_MAGBIO' => 'mbi', 'MBI11_g13057_MAGBIO' => 'mbi', 'MD02G1137200' => 'mdo', 'MD06G1137200' => 'mdo', 'MD07G1122300' => 'mdo', 'MD09G1078200' => 'mdo', 'MD13G1123700' => 'mdo', 'MD14G1151900' => 'mdo', 'MD17G1030900' => 'mdo', 'MD17G1068200' => 'mdo', 'MD17G1068600' => 'mdo', 'Medtr3g077540' => 'mtr', 'Medtr4g105530' => 'mtr', 'Medtr8g076580' => 'mtr', 'Medtr8g076590' => 'mtr', 'Medtr8g096410' => 'mtr', 'MELO3C016411.2' => 'cme', 'MELO3C017780.2' => 'cme', 'MELO3C022560.2' => 'cme', 'MELO3C026187.2' => 'cme', 'MELO3C026286.2' => 'cme', 'MELO3C032854.2' => 'cme', 'Migut.H02495' => 'egut', 'Migut.I00561' => 'egut', 'Migut.K01015' => 'egut', 'Migut.K01016' => 'egut', 'Migut.L00743' => 'egut', 'Migut.L00744' => 'egut', 'Migut.L00746' => 'egut', 'Migut.L00798' => 'egut', 'Migut.L00799' => 'egut', 'Migut.N02096' => 'egut', 'MSTRG.11259' => 'ama', 'MSTRG.23142' => 'ama', 'MSTRG.2499' => 'ama', 'Nitab4.5_0000003g0730' => 'nta', 'Nitab4.5_0000137g0020' => 'nta', 'Nitab4.5_0000721g0210' => 'nta', 'Nitab4.5_0000723g0050' => 'nta', 'Nitab4.5_0000913g0070' => 'nta', 'Nitab4.5_0001332g0040' => 'nta', 'Nitab4.5_0001771g0050' => 'nta', 'Nitab4.5_0001918g0050' => 'nta', 'Nitab4.5_0002686g0030' => 'nta', 'Nitab4.5_0003156g0020' => 'nta', 'Nitab4.5_0003383g0040' => 'nta', 'Nitab4.5_0003918g0010' => 'nta', 'Nitab4.5_0006760g0010' => 'nta', 'Nn1g05981' => 'nnu', 'Nn1g06288' => 'nnu', 'Nn3g16371' => 'nnu', 'Nn3g16786' => 'nnu', 'Nn4g22232' => 'nnu', 'Oeu005144.1' => 'oeu', 'Oeu005145.1' => 'oeu', 'Oeu011348.1' => 'oeu', 'Oeu016415.1' => 'oeu', 'Oeu023501.1' => 'oeu', 'Oeu044473.1' => 'oeu', 'Oeu048892.2' => 'oeu', 'Os01g0549200' => 'osa', 'Os02g0469300' => 'osa', 'Os04g0311100' => 'osa', 'Os06g0474900' => 'osa', 'Os10g0181700' => 'osa', 'Os11g0454800' => 'osa', 'Peaxi162Scf00037g00714' => 'pax', 'Peaxi162Scf00084g01217' => 'pax', 'Peaxi162Scf00257g00217' => 'pax', 'Peaxi162Scf00516g00215' => 'pax', 'Peaxi162Scf00689g00123' => 'pax', 'PGR044G2719' => 'pgr', 'PGR083G1360' => 'pgr', 'PGR102G2849' => 'pgr', 'PGR119G2534' => 'pgr', 'PGSC0003DMG400003538' => 'stu', 'PGSC0003DMG400028138' => 'stu', 'PGSC0003DMG400031732' => 'stu', 'PGSC0003DMG400038165' => 'stu', 'Phvul.002G284600' => 'pvu', 'Phvul.003G258200' => 'pvu', 'Phvul.009G176500' => 'pvu', 'Potri.003G167201' => 'ptr', 'Potri.005G118400' => 'ptr', 'Potri.012G089000' => 'ptr', 'Potri.012G102800' => 'ptr', 'Potri.015G079400' => 'ptr', 'Potri.015G100900' => 'ptr', 'Pp3c14_9810' => 'ppa', 'Pp3c15_10450' => 'ppa', 'Pp3c20_19150' => 'ppa', 'Pp3c23_12740' => 'ppa', 'Pp3c23_6310' => 'ppa', 'Pp3c24_3720' => 'ppa', 'Pp3c27_2580' => 'ppa', 'Pp3c9_8990' => 'ppa', 'PRCOL_00002854' => 'pco', 'Prupe.1G221200' => 'ppe', 'Prupe.3G289000' => 'ppe', 'Prupe.5G147000' => 'ppe', 'Prupe.6G157300' => 'ppe', 'Prupe.7G163400' => 'ppe', 'Psat0s2177g0040' => 'psa', 'Psat3g174760' => 'psa', 'Psat3g192160' => 'psa', 'Psat4g058520' => 'psa', 'Psat4g096840' => 'psa', 'Psat7g037320' => 'psa', 'PSO017G1274' => 'pso', 'PSO017G5166' => 'pso', 'PSO063G4558' => 'pso', 'PSO170G4458' => 'pso', 'PSO170G5005' => 'pso', 'PSO210G6156' => 'pso', 'PSO210G6635' => 'pso', 'PSO210G7397' => 'pso', 'PSO210G7700' => 'pso', 'PSO455G0035' => 'pso', 'PSO455G0180' => 'pso', 'PSO478G4515' => 'pso', 'PSO832G1305' => 'pso', 'PSO832G3489' => 'pso', 'QL02p075247' => 'qlo', 'QL03p051148' => 'qlo', 'QL05p010313' => 'qlo', 'QL06p034627' => 'qlo', 'QL10p001889' => 'qlo', 'QL10p010846' => 'qlo', 'RcHm_v2.0_Chr1g0350621' => 'rch', 'RcHm_v2.0_Chr1g0350641' => 'rch', 'RcHm_v2.0_Chr2g0092891' => 'rch', 'RcHm_v2.0_Chr2g0100251' => 'rch', 'RcHm_v2.0_Chr2g0158661' => 'rch', 'RcHm_v2.0_Chr2g0172741' => 'rch', 'RcHm_v2.0_Chr4g0429571' => 'rch', 'RcHm_v2.0_Chr5g0042471' => 'rch', 'RcHm_v2.0_Chr7g0189451' => 'rch', 'Rhsim08G0052000' => 'rsi', 'Rhsim08G0174400' => 'rsi', 'Rhsim08G0193200' => 'rsi', 'Rhsim10G0214800' => 'rsi', 'Rhsim10G0214900' => 'rsi', 'Rhsim10G0215000' => 'rsi', 'Rhsim12G0022900' => 'rsi', 'Rhsim12G0177500' => 'rsi', 'Rhsim12G0177700' => 'rsi', 'Sabra03G0122600' => 'sbr', 'Sabra05G0097400' => 'sbr', 'Sabra12G0064100' => 'sbr', 'Sabra15G0121300' => 'sbr', 'SalBow2G0642' => 'sbo', 'SalBow5G2667' => 'sbo', 'SalBow5G4873' => 'sbo', 'SalBow8G2395' => 'sbo', 'Sc03g0003290' => 'sci', 'Sc10g0010130' => 'sci', 'Sc22g0003650' => 'sci', 'Sed0001603' => 'sed', 'Sed0004259' => 'sed', 'Sed0006789' => 'sed', 'Sed0011838' => 'sed', 'Sed0012964' => 'sed', 'Sed0016383' => 'sed', 'Sed0019010' => 'sed', 'Sed0020188' => 'sed', 'SEGI_04702' => 'sgi', 'SEGI_17231' => 'sgi', 'SEGI_18877' => 'sgi', 'SEGI_25196' => 'sgi', 'SEGI_25515' => 'sgi', 'SEGI_28445' => 'sgi', 'SEGI_37452' => 'sgi', 'SGA_v2.0_scaffold188G40336' => 'sas', 'SGA_v2.0_scaffold228G43247' => 'sas', 'SGA_v2.0_scaffold280G46853' => 'sas', 'SGA_v2.0_scaffold34G13808' => 'sas', 'SGA_v2.0_scaffold40G15576' => 'sas', 'SGA_v2.0_scaffold611G53188' => 'sas', 'SGA_v2.0_scaffold78G25461' => 'sas', 'SGA_v2.0_scaffold90G27888' => 'sas', 'SHI08601' => 'shi', 'SHI08606' => 'shi', 'SHI17117' => 'shi', 'SHI17119' => 'shi', 'SMO118G0201' => 'smo', 'SMO169G0247' => 'smo', 'SMO176G0006' => 'smo', 'SMO176G0015' => 'smo', 'SMO202G0006' => 'smo', 'SMO240G0050' => 'smo', 'SMO286G0009' => 'smo', 'SMO338G0033' => 'smo', 'SMO356G0533' => 'smo', 'SMO364G0382' => 'smo', 'SMO367G0166' => 'smo', 'SMO367G1098' => 'smo', 'Solyc01g009920.3' => 'sly', 'Solyc01g099300.3' => 'sly', 'Solyc02g084700.3' => 'sly', 'Solyc03g097520.3' => 'sly', 'Solyc06g071580.3' => 'sly', 'Solyc10g081760.3' => 'sly', 'Sopen01g005480' => 'spe', 'Sopen01g042850' => 'spe', 'Sopen02g029370' => 'spe', 'Sopen03g028280' => 'spe', 'Sopen06g027870' => 'spe', 'Sopen10g032270' => 'spe', 'Sp5g18180' => 'spa', 'Sp6g12880' => 'spa', 'Sp6g30850' => 'spa', 'Sp7g22960' => 'spa', 'Sp7g34010' => 'spa', 'SpUn1326_0010' => 'spa', 'TAR371G0242' => 'tar', 'TAR622G0638' => 'tar', 'TAR628G1548' => 'tar', 'TAR629G1079' => 'tar', 'TAR629G3413' => 'tar', 'THA.LOC104804249' => 'tha', 'THA.LOC104808315' => 'tha', 'THA.LOC104809238' => 'tha', 'THA.LOC104825484' => 'tha', 'Thecc.01G025500' => 'tca', 'Thecc.03G015800' => 'tca', 'Thecc.03G018000' => 'tca', 'Thecc.03G134800' => 'tca', 'Thecc.04G014700' => 'tca', 'Thhalv10006991m.g' => 'esa', 'Thhalv10012707m.g' => 'esa', 'Thhalv10015739m.g' => 'esa', 'Thhalv10024553m.g' => 'esa', 'Thhalv10024673m.g' => 'esa', 'Thhalv10029187m.g' => 'esa', 'TPR.G12971' => 'tpr', 'TPR.G29396' => 'tpr', 'TPR.G33376' => 'tpr', 'TPR.G35508' => 'tpr', 'TPR.G35516' => 'tpr', 'TPR.G37317' => 'tpr', 'TPR.G37389' => 'tpr', 'TPR.G37523' => 'tpr', 'TPR.G559' => 'tpr', 'TWI14G0070' => 'twi', 'TWI14G0729' => 'twi', 'TWI18G0596' => 'twi', 'TWI39G0780' => 'twi', 'TWI39G0850' => 'twi', 'TWI73G1052' => 'twi', 'unitig_52.g17485' => 'ugi', 'unitig_61.g26355' => 'ugi', 'vmacro01040' => 'vma', 'vmacro16731' => 'vma', 'vmacro18270' => 'vma', 'vmacro19142' => 'vma', 'vmacro19407' => 'vma', 'vmacro19408' => 'vma', 'vmacro21899' => 'vma', 'vmacro21900' => 'vma', 'vmacro21901' => 'vma', 'VMungo0251G0490' => 'vmu', 'VMungo0251G1748' => 'vmu', 'VMungo1309G0421' => 'vmu', 'Zm00001eb086500' => 'zma', 'Zm00001eb150680' => 'zma', 'Zm00001eb162330' => 'zma', 'Zm00001eb203130' => 'zma', 'Zm00001eb369480' => 'zma', 'Zm00001eb382340' => 'zma', 'Zm00001eb416360' => 'zma' ), 'gf_id' => 'HOM05D000902', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000902' ), 'data_identifier' => 'HOM05D000902', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000902', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '663', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02470' => 'bna', 'A01p16260' => 'bna', 'A02p01680' => 'bna', 'A03p16600' => 'bna', 'A03p55660' => 'bna', 'A03p64160' => 'bna', 'A03p64170' => 'bna', 'A08p31900' => 'bna', 'A09p59530' => 'bna', 'A10p08230' => 'bna', 'A10p25090' => 'bna', 'Aa31LG3G7100' => 'aar', 'Aa31LG3G7110' => 'aar', 'Aa31LG6G13160' => 'aar', 'Aa31LG7G10770' => 'aar', 'Aa31LG7G3830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2723' => 'aag', 'Actinidia08045' => 'ach', 'Actinidia08888' => 'ach', 'Actinidia18333' => 'ach', 'Actinidia19334' => 'ach', 'Actinidia25552' => 'ach', 'Actinidia26089' => 'ach', 'Actinidia30615' => 'ach', 'Actinidia30616' => 'ach', 'Actinidia33083' => 'ach', 'Actinidia35762' => 'ach', 'Ah.02g110620' => 'amhyb', 'Ah.11g046390' => 'amhyb', 'AL1G31670' => 'aly', 'AL6G23730' => 'aly', 'AL7G14740' => 'aly', 'AL7G14750' => 'aly', 'AL7G14760' => 'aly', 'AL7G28220' => 'aly', 'AL8G24940' => 'aly', 'Aqoxy3G01665' => 'aox', 'Aqoxy3G02853' => 'aox', 'Aqoxy5G01513' => 'aox', 'Aqoxy5G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8SKA4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ75LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKDA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0LJZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7REX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZP4YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWX7I5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2QKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS0L9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPCD8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q161UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC7XCF' => 'arhy', 'AT1G19100' => 'ath', 'AT4G24970' => 'ath', 'AT4G36270' => 'ath', 'AT4G36280' => 'ath', 'AT4G36290' => 'ath', 'AT5G13130' => 'ath', 'AT5G50780' => 'ath', 'ATR0582G266' => 'atr', 'ATR0661G195' => 'atr', 'ATR1152G031' => 'atr', 'Atru.chr11.2382' => 'acertr', 'Atru.chr12.2337' => 'acertr', 'Atru.chr3.744' => 'acertr', 'Atru.chr6.1870' => 'acertr', 'Atru.chr9.2515' => 'acertr', 'AUR62004120' => 'cqu', 'AUR62005667' => 'cqu', 'AUR62007634' => 'cqu', 'AUR62008186' => 'cqu', 'AUR62008187' => 'cqu', 'AUR62008188' => 'cqu', 'AUR62027954' => 'cqu', 'AUR62028766' => 'cqu', 'AUR62028767' => 'cqu', 'AUR62028768' => 'cqu', 'AUR62028886' => 'cqu', 'AUR62029563' => 'cqu', 'AUR62038832' => 'cqu', 'BcaB01g04149' => 'bca', 'BcaB03g12940' => 'bca', 'BcaB03g13090' => 'bca', 'BcaB03g14466' => 'bca', 'BcaB05g24035' => 'bca', 'BcaC01g06050' => 'bca', 'BcaC04g19148' => 'bca', 'BcaC04g20761' => 'bca', 'BcaC06g32845' => 'bca', 'BcaC07g41274' => 'bca', 'BcaC09g50827' => 'bca', 'BcaNung00741' => 'bca', 'BcaNung00742' => 'bca', 'BcaNung01859' => 'bca', 'BcaNung03985' => 'bca', 'BcaNung03989' => 'bca', 'BcaNung05661' => 'bca', 'BolC1t00257H' => 'bol', 'BolC1t01956H' => 'bol', 'BolC2t06534H' => 'bol', 'BolC3t14334H' => 'bol', 'BolC5t30451H' => 'bol', 'BolC7t45880H' => 'bol', 'BolC7t46586H' => 'bol', 'BolC8t49301H' => 'bol', 'BolC8t51837H' => 'bol', 'BolC9t56822H' => 'bol', 'BolC9t59235H' => 'bol', 'BraA01t00234Z' => 'bra', 'BraA01t01563Z' => 'bra', 'BraA02t05147Z' => 'bra', 'BraA03t10947Z' => 'bra', 'BraA03t14633Z' => 'bra', 'BraA08t35112Z' => 'bra', 'BraA09t41330Z' => 'bra', 'BraA10t44570Z' => 'bra', 'C01p02670' => 'bna', 'C01p20260' => 'bna', 'C02p05890' => 'bna', 'C03p19530' => 'bna', 'C05p17470' => 'bna', 'C07p53900' => 'bna', 'C07p61630' => 'bna', 'C08p16800' => 'bna', 'C08p42810' => 'bna', 'C09p39480' => 'bna', 'C09p63980' => 'bna', 'CAN.G1001.7' => 'can', 'CAN.G1034.55' => 'can', 'CAN.G143.7' => 'can', 'CAN.G3340.1' => 'can', 'CAN.G358.19' => 'can', 'CAN.G373.2' => 'can', 'CAN.G674.16' => 'can', 'CAN.G674.17' => 'can', 'CAN.G674.18' => 'can', 'CAN.G732.2' => 'can', 'CAN.G732.3' => 'can', 'CAN.G993.39' => 'can', 'CANSAT01G2052' => 'cansat', 'CANSAT80G0070' => 'cansat', 'CANSAT80G0483' => 'cansat', 'CANSAT80G0625' => 'cansat', 'CARHR019690' => 'chi', 'CARHR080280' => 'chi', 'CARHR152750' => 'chi', 'CARHR152760' => 'chi', 'CARHR152770' => 'chi', 'CARHR200340' => 'chi', 'CARHR232370' => 'chi', 'CARHR244670' => 'chi', 'CARHR244680' => 'chi', 'CARHR257520' => 'chi', 'Carub.0001s1872' => 'cru', 'Carub.0006s1130' => 'cru', 'Carub.0007s0396' => 'cru', 'Carub.0007s0397' => 'cru', 'Carub.0007s1608' => 'cru', 'Carub.0008s1068' => 'cru', 'Carub.0008s1077' => 'cru', 'Ca_16158_v3' => 'car', 'Ca_17571_v3' => 'car', 'Ca_21936_v3' => 'car', 'Ca_22350_v3' => 'car', 'CBR_g22445' => 'cbr', 'CBR_g26290' => 'cbr', 'Cc04_g09610' => 'ccan', 'Cc04_g12280' => 'ccan', 'Cc07_g10230' => 'ccan', 'CDE02G0093' => 'cde', 'CDE02G0701' => 'cde', 'CDE04G1050' => 'cde', 'CDE05G1833' => 'cde', 'CDE05G3058' => 'cde', 'CDE05G3380' => 'cde', 'CDE06G0536' => 'cde', 'Cfa006923' => 'cfa', 'Cfa009402' => 'cfa', 'Cfa018751' => 'cfa', 'Cfa019164' => 'cfa', 'Cfa022935' => 'cfa', 'Ciclev10019081m.g' => 'ccl', 'Ciclev10025076m.g' => 'ccl', 'Ciclev10030712m.g' => 'ccl', 'Ciclev10033760m.g' => 'ccl', 'CiPaw.05G105600' => 'cil', 'CiPaw.08G136700' => 'cil', 'CiPaw.11G003900' => 'cil', 'CiPaw.11G023700' => 'cil', 'CiPaw.12G003700' => 'cil', 'ClCG06G017100' => 'cla', 'ClCG06G018110' => 'cla', 'ClCG07G008800' => 'cla', 'ClCG07G015330' => 'cla', 'COL.COLO4_13698' => 'col', 'COL.COLO4_16659' => 'col', 'COL.COLO4_21986' => 'col', 'COL.COLO4_24049' => 'col', 'COL.COLO4_29061' => 'col', 'COL.COLO4_29075' => 'col', 'COL.COLO4_30094' => 'col', 'Cpa.g.c33689' => 'cpa', 'Cpa.g.sc108.39' => 'cpa', 'Cpa.g.sc108.41' => 'cpa', 'Cpa.g.sc1163.1' => 'cpa', 'Cpa.g.sc4.155' => 'cpa', 'Cpa.g.sc6.194' => 'cpa', 'CsaV3_1G000340' => 'csa', 'CsaV3_1G001400' => 'csa', 'CsaV3_4G002220' => 'csa', 'CsaV3_4G005370' => 'csa', 'CSS0007487' => 'camsi', 'CSS0008066' => 'camsi', 'CSS0009120' => 'camsi', 'CSS0015512' => 'camsi', 'CSS0022409' => 'camsi', 'CSS0025358' => 'camsi', 'CSS0044547' => 'camsi', 'DCAR_013057' => 'dca', 'DCAR_015058' => 'dca', 'DCAR_016027' => 'dca', 'DCAR_017327' => 'dca', 'DCAR_020743' => 'dca', 'DCAR_026157' => 'dca', 'DCAR_032339' => 'dca', 'DCAR_032340' => 'dca', 'Dinv11200' => 'din', 'Dinv11201' => 'din', 'Dinv20631' => 'din', 'Dinv23182' => 'din', 'Dinv33466' => 'din', 'Dinv33583' => 'din', 'Dinv38565' => 'din', 'Duzib068G0200' => 'dzi', 'Duzib147G0132' => 'dzi', 'Duzib147G0635' => 'dzi', 'Duzib205G1670' => 'dzi', 'Duzib251G0606' => 'dzi', 'ECA232G3336' => 'eca', 'ECA232G3763' => 'eca', 'ECA232G4845' => 'eca', 'ECA234G1607' => 'eca', 'ECA246G0932' => 'eca', 'ECA247G0781' => 'eca', 'ECA247G1932' => 'eca', 'ECA247G2079' => 'eca', 'ECA247G3338' => 'eca', 'ECA247G4115' => 'eca', 'EL10Ac3g06552' => 'bvu', 'EL10Ac5g10721' => 'bvu', 'EL10Ac5g10722' => 'bvu', 'EL10Ac5g10723' => 'bvu', 'EL10Ac5g11361' => 'bvu', 'EL10Ac6g13553' => 'bvu', 'EL10As8g23872' => 'bvu', 'Eucgr.B00250' => 'egr', 'Eucgr.B00251' => 'egr', 'Eucgr.B03533' => 'egr', 'Eucgr.I02381' => 'egr', 'Eucgr.K02700' => 'egr', 'FAN02G0174' => 'fan', 'FAN02G3146' => 'fan', 'FAN04G1672' => 'fan', 'FAN04G2273' => 'fan', 'FAN05G2791' => 'fan', 'FAN05G4035' => 'fan', 'FAN07G0834' => 'fan', 'FAN08G1198' => 'fan', 'FAN09G4182' => 'fan', 'FAN12G0496' => 'fan', 'FAN13G1027' => 'fan', 'FAN13G2951' => 'fan', 'FAN14G0705' => 'fan', 'FAN14G0720' => 'fan', 'FAN17G0201' => 'fan', 'FAN17G2665' => 'fan', 'FAN18G1456' => 'fan', 'FAN18G1525' => 'fan', 'FAN18G3500' => 'fan', 'FAN28G2670' => 'fan', 'FvH4_1g12391' => 'fve', 'FvH4_4g23220' => 'fve', 'FvH4_5g08810' => 'fve', 'FvH4_5g28960' => 'fve', 'FvH4_6g42820' => 'fve', 'FvH4_6g51110' => 'fve', 'Glyma.02G051802' => 'gma', 'Glyma.04G185300' => 'gma', 'Glyma.05G202900' => 'gma', 'Glyma.08G010300' => 'gma', 'Glyma.16G131900' => 'gma', 'Glyma.17G087900' => 'gma', 'Gohir.A07G048600' => 'ghi', 'Gohir.A11G179000' => 'ghi', 'Gohir.A12G140900' => 'ghi', 'Gohir.A12G140950' => 'ghi', 'Gohir.A12G191700' => 'ghi', 'Gohir.A13G086300' => 'ghi', 'Gohir.D07G052900' => 'ghi', 'Gohir.D11G186600' => 'ghi', 'Gohir.D12G145575' => 'ghi', 'Gohir.D12G145650' => 'ghi', 'Gohir.D12G145725' => 'ghi', 'Gohir.D12G194050' => 'ghi', 'Gohir.D13G091800' => 'ghi', 'Gorai.001G055900' => 'gra', 'Gorai.007G198400' => 'gra', 'Gorai.008G157000' => 'gra', 'Gorai.008G157100' => 'gra', 'Gorai.008G208700' => 'gra', 'Gorai.010G138700' => 'gra', 'GSVIVG01000977001' => 'vvi', 'GSVIVG01007708001' => 'vvi', 'GSVIVG01008587001' => 'vvi', 'GSVIVG01018849001' => 'vvi', 'GSVIVG01032432001' => 'vvi', 'HanXRQChr02g0034131' => 'han', 'HanXRQChr02g0035981' => 'han', 'HanXRQChr02g0035991' => 'han', 'HanXRQChr05g0155611' => 'han', 'HanXRQChr05g0155621' => 'han', 'HanXRQChr08g0236501' => 'han', 'HanXRQChr09g0261321' => 'han', 'HanXRQChr09g0272081' => 'han', 'HanXRQChr10g0310741' => 'han', 'HanXRQChr11g0325591' => 'han', 'HanXRQChr12g0385691' => 'han', 'HanXRQChr13g0387801' => 'han', 'HanXRQChr15g0463011' => 'han', 'Haze_03826' => 'cav', 'Haze_03827' => 'cav', 'Haze_07183' => 'cav', 'Haze_07537' => 'cav', 'Haze_07539' => 'cav', 'Haze_12461' => 'cav', 'Haze_16115' => 'cav', 'Haze_16808' => 'cav', 'Haze_18531' => 'cav', 'Hma1.2p1_0046F.1_g026700' => 'hma', 'Hma1.2p1_0046F.1_g026710' => 'hma', 'Hma1.2p1_0168F.1_g074340' => 'hma', 'Hma1.2p1_0266F.1_g107030' => 'hma', 'Hma1.2p1_0266F.1_g107060' => 'hma', 'Hma1.2p1_0275F.1_g110510' => 'hma', 'Hma1.2p1_0592F.1_g185490' => 'hma', 'Hma1.2p1_0592F.1_g185500' => 'hma', 'Hma1.2p1_0592F.1_g185510' => 'hma', 'Hma1.2p1_0592F.1_g185520' => 'hma', 'Hma1.2p1_0592F.1_g185530' => 'hma', 'Hma1.2p1_0818F.1_g223450' => 'hma', 'HPP92_009708' => 'vpl', 'HPP92_009793' => 'vpl', 'HPP92_009796' => 'vpl', 'HPP92_009797' => 'vpl', 'HPP92_014940' => 'vpl', 'HPP92_014988' => 'vpl', 'Hund02463' => 'sun', 'Hund02760' => 'sun', 'Hund05071' => 'sun', 'Hund10108' => 'sun', 'Hund11204' => 'sun', 'Hund14016' => 'sun', 'Hund16464' => 'sun', 'Lalb_Chr09g0333391' => 'lal', 'Lalb_Chr11g0070461' => 'lal', 'Lalb_Chr12g0201671' => 'lal', 'Lalb_Chr13g0297161' => 'lal', 'Lj1g0002823' => 'lja', 'Lj3C1074T6' => 'lonja', 'Lj4A212T28' => 'lonja', 'Lj4g0005516' => 'lja', 'Lj4g0013705' => 'lja', 'Lj4g0027865' => 'lja', 'Lj5C92G16' => 'lonja', 'Lj5C92T12' => 'lonja', 'Lj7C596T3' => 'lonja', 'Lj9A446G59' => 'lonja', 'Lj9A482G21' => 'lonja', 'Lsat_1_v5_gn_1_28261' => 'lsa', 'Lsat_1_v5_gn_1_28281' => 'lsa', 'Lsat_1_v5_gn_1_32721' => 'lsa', 'Lsat_1_v5_gn_4_151760' => 'lsa', 'Lsat_1_v5_gn_4_2120' => 'lsa', 'Lsat_1_v5_gn_4_75761' => 'lsa', 'Lsat_1_v5_gn_5_10920' => 'lsa', 'Manes.02G099900' => 'mes', 'Manes.11G096200' => 'mes', 'Manes.12G007200' => 'mes', 'Manes.14G048300' => 'mes', 'Manes.17G114700' => 'mes', 'Mapoly0002s0070' => 'mpo', 'Mapoly0029s0099' => 'mpo', 'MBI07_g24742_MAGBIO' => 'mbi', 'MBI10_g27988_MAGBIO' => 'mbi', 'MBI11_g13057_MAGBIO' => 'mbi', 'MD02G1137200' => 'mdo', 'MD06G1137200' => 'mdo', 'MD07G1122300' => 'mdo', 'MD09G1078200' => 'mdo', 'MD13G1123700' => 'mdo', 'MD14G1151900' => 'mdo', 'MD17G1030900' => 'mdo', 'MD17G1068200' => 'mdo', 'MD17G1068600' => 'mdo', 'Medtr3g077540' => 'mtr', 'Medtr4g105530' => 'mtr', 'Medtr8g076580' => 'mtr', 'Medtr8g076590' => 'mtr', 'Medtr8g096410' => 'mtr', 'MELO3C016411.2' => 'cme', 'MELO3C017780.2' => 'cme', 'MELO3C022560.2' => 'cme', 'MELO3C026187.2' => 'cme', 'MELO3C026286.2' => 'cme', 'MELO3C032854.2' => 'cme', 'Migut.H02495' => 'egut', 'Migut.I00561' => 'egut', 'Migut.K01015' => 'egut', 'Migut.K01016' => 'egut', 'Migut.L00743' => 'egut', 'Migut.L00744' => 'egut', 'Migut.L00746' => 'egut', 'Migut.L00798' => 'egut', 'Migut.L00799' => 'egut', 'Migut.N02096' => 'egut', 'MSTRG.11259' => 'ama', 'MSTRG.23142' => 'ama', 'MSTRG.2499' => 'ama', 'Nitab4.5_0000003g0730' => 'nta', 'Nitab4.5_0000137g0020' => 'nta', 'Nitab4.5_0000721g0210' => 'nta', 'Nitab4.5_0000723g0050' => 'nta', 'Nitab4.5_0000913g0070' => 'nta', 'Nitab4.5_0001332g0040' => 'nta', 'Nitab4.5_0001771g0050' => 'nta', 'Nitab4.5_0001918g0050' => 'nta', 'Nitab4.5_0002686g0030' => 'nta', 'Nitab4.5_0003156g0020' => 'nta', 'Nitab4.5_0003383g0040' => 'nta', 'Nitab4.5_0003918g0010' => 'nta', 'Nitab4.5_0006760g0010' => 'nta', 'Nn1g05981' => 'nnu', 'Nn1g06288' => 'nnu', 'Nn3g16371' => 'nnu', 'Nn3g16786' => 'nnu', 'Nn4g22232' => 'nnu', 'Oeu005144.1' => 'oeu', 'Oeu005145.1' => 'oeu', 'Oeu011348.1' => 'oeu', 'Oeu016415.1' => 'oeu', 'Oeu023501.1' => 'oeu', 'Oeu044473.1' => 'oeu', 'Oeu048892.2' => 'oeu', 'Os01g0549200' => 'osa', 'Os02g0469300' => 'osa', 'Os04g0311100' => 'osa', 'Os06g0474900' => 'osa', 'Os10g0181700' => 'osa', 'Os11g0454800' => 'osa', 'Peaxi162Scf00037g00714' => 'pax', 'Peaxi162Scf00084g01217' => 'pax', 'Peaxi162Scf00257g00217' => 'pax', 'Peaxi162Scf00516g00215' => 'pax', 'Peaxi162Scf00689g00123' => 'pax', 'PGR044G2719' => 'pgr', 'PGR083G1360' => 'pgr', 'PGR102G2849' => 'pgr', 'PGR119G2534' => 'pgr', 'PGSC0003DMG400003538' => 'stu', 'PGSC0003DMG400028138' => 'stu', 'PGSC0003DMG400031732' => 'stu', 'PGSC0003DMG400038165' => 'stu', 'Phvul.002G284600' => 'pvu', 'Phvul.003G258200' => 'pvu', 'Phvul.009G176500' => 'pvu', 'Potri.003G167201' => 'ptr', 'Potri.005G118400' => 'ptr', 'Potri.012G089000' => 'ptr', 'Potri.012G102800' => 'ptr', 'Potri.015G079400' => 'ptr', 'Potri.015G100900' => 'ptr', 'Pp3c14_9810' => 'ppa', 'Pp3c15_10450' => 'ppa', 'Pp3c20_19150' => 'ppa', 'Pp3c23_12740' => 'ppa', 'Pp3c23_6310' => 'ppa', 'Pp3c24_3720' => 'ppa', 'Pp3c27_2580' => 'ppa', 'Pp3c9_8990' => 'ppa', 'PRCOL_00002854' => 'pco', 'Prupe.1G221200' => 'ppe', 'Prupe.3G289000' => 'ppe', 'Prupe.5G147000' => 'ppe', 'Prupe.6G157300' => 'ppe', 'Prupe.7G163400' => 'ppe', 'Psat0s2177g0040' => 'psa', 'Psat3g174760' => 'psa', 'Psat3g192160' => 'psa', 'Psat4g058520' => 'psa', 'Psat4g096840' => 'psa', 'Psat7g037320' => 'psa', 'PSO017G1274' => 'pso', 'PSO017G5166' => 'pso', 'PSO063G4558' => 'pso', 'PSO170G4458' => 'pso', 'PSO170G5005' => 'pso', 'PSO210G6156' => 'pso', 'PSO210G6635' => 'pso', 'PSO210G7397' => 'pso', 'PSO210G7700' => 'pso', 'PSO455G0035' => 'pso', 'PSO455G0180' => 'pso', 'PSO478G4515' => 'pso', 'PSO832G1305' => 'pso', 'PSO832G3489' => 'pso', 'QL02p075247' => 'qlo', 'QL03p051148' => 'qlo', 'QL05p010313' => 'qlo', 'QL06p034627' => 'qlo', 'QL10p001889' => 'qlo', 'QL10p010846' => 'qlo', 'RcHm_v2.0_Chr1g0350621' => 'rch', 'RcHm_v2.0_Chr1g0350641' => 'rch', 'RcHm_v2.0_Chr2g0092891' => 'rch', 'RcHm_v2.0_Chr2g0100251' => 'rch', 'RcHm_v2.0_Chr2g0158661' => 'rch', 'RcHm_v2.0_Chr2g0172741' => 'rch', 'RcHm_v2.0_Chr4g0429571' => 'rch', 'RcHm_v2.0_Chr5g0042471' => 'rch', 'RcHm_v2.0_Chr7g0189451' => 'rch', 'Rhsim08G0052000' => 'rsi', 'Rhsim08G0174400' => 'rsi', 'Rhsim08G0193200' => 'rsi', 'Rhsim10G0214800' => 'rsi', 'Rhsim10G0214900' => 'rsi', 'Rhsim10G0215000' => 'rsi', 'Rhsim12G0022900' => 'rsi', 'Rhsim12G0177500' => 'rsi', 'Rhsim12G0177700' => 'rsi', 'Sabra03G0122600' => 'sbr', 'Sabra05G0097400' => 'sbr', 'Sabra12G0064100' => 'sbr', 'Sabra15G0121300' => 'sbr', 'SalBow2G0642' => 'sbo', 'SalBow5G2667' => 'sbo', 'SalBow5G4873' => 'sbo', 'SalBow8G2395' => 'sbo', 'Sc03g0003290' => 'sci', 'Sc10g0010130' => 'sci', 'Sc22g0003650' => 'sci', 'Sed0001603' => 'sed', 'Sed0004259' => 'sed', 'Sed0006789' => 'sed', 'Sed0011838' => 'sed', 'Sed0012964' => 'sed', 'Sed0016383' => 'sed', 'Sed0019010' => 'sed', 'Sed0020188' => 'sed', 'SEGI_04702' => 'sgi', 'SEGI_17231' => 'sgi', 'SEGI_18877' => 'sgi', 'SEGI_25196' => 'sgi', 'SEGI_25515' => 'sgi', 'SEGI_28445' => 'sgi', 'SEGI_37452' => 'sgi', 'SGA_v2.0_scaffold188G40336' => 'sas', 'SGA_v2.0_scaffold228G43247' => 'sas', 'SGA_v2.0_scaffold280G46853' => 'sas', 'SGA_v2.0_scaffold34G13808' => 'sas', 'SGA_v2.0_scaffold40G15576' => 'sas', 'SGA_v2.0_scaffold611G53188' => 'sas', 'SGA_v2.0_scaffold78G25461' => 'sas', 'SGA_v2.0_scaffold90G27888' => 'sas', 'SHI08601' => 'shi', 'SHI08606' => 'shi', 'SHI17117' => 'shi', 'SHI17119' => 'shi', 'SMO118G0201' => 'smo', 'SMO169G0247' => 'smo', 'SMO176G0006' => 'smo', 'SMO176G0015' => 'smo', 'SMO202G0006' => 'smo', 'SMO240G0050' => 'smo', 'SMO286G0009' => 'smo', 'SMO338G0033' => 'smo', 'SMO356G0533' => 'smo', 'SMO364G0382' => 'smo', 'SMO367G0166' => 'smo', 'SMO367G1098' => 'smo', 'Solyc01g009920.3' => 'sly', 'Solyc01g099300.3' => 'sly', 'Solyc02g084700.3' => 'sly', 'Solyc03g097520.3' => 'sly', 'Solyc06g071580.3' => 'sly', 'Solyc10g081760.3' => 'sly', 'Sopen01g005480' => 'spe', 'Sopen01g042850' => 'spe', 'Sopen02g029370' => 'spe', 'Sopen03g028280' => 'spe', 'Sopen06g027870' => 'spe', 'Sopen10g032270' => 'spe', 'Sp5g18180' => 'spa', 'Sp6g12880' => 'spa', 'Sp6g30850' => 'spa', 'Sp7g22960' => 'spa', 'Sp7g34010' => 'spa', 'SpUn1326_0010' => 'spa', 'TAR371G0242' => 'tar', 'TAR622G0638' => 'tar', 'TAR628G1548' => 'tar', 'TAR629G1079' => 'tar', 'TAR629G3413' => 'tar', 'THA.LOC104804249' => 'tha', 'THA.LOC104808315' => 'tha', 'THA.LOC104809238' => 'tha', 'THA.LOC104825484' => 'tha', 'Thecc.01G025500' => 'tca', 'Thecc.03G015800' => 'tca', 'Thecc.03G018000' => 'tca', 'Thecc.03G134800' => 'tca', 'Thecc.04G014700' => 'tca', 'Thhalv10006991m.g' => 'esa', 'Thhalv10012707m.g' => 'esa', 'Thhalv10015739m.g' => 'esa', 'Thhalv10024553m.g' => 'esa', 'Thhalv10024673m.g' => 'esa', 'Thhalv10029187m.g' => 'esa', 'TPR.G12971' => 'tpr', 'TPR.G29396' => 'tpr', 'TPR.G33376' => 'tpr', 'TPR.G35508' => 'tpr', 'TPR.G35516' => 'tpr', 'TPR.G37317' => 'tpr', 'TPR.G37389' => 'tpr', 'TPR.G37523' => 'tpr', 'TPR.G559' => 'tpr', 'TWI14G0070' => 'twi', 'TWI14G0729' => 'twi', 'TWI18G0596' => 'twi', 'TWI39G0780' => 'twi', 'TWI39G0850' => 'twi', 'TWI73G1052' => 'twi', 'unitig_52.g17485' => 'ugi', 'unitig_61.g26355' => 'ugi', 'vmacro01040' => 'vma', 'vmacro16731' => 'vma', 'vmacro18270' => 'vma', 'vmacro19142' => 'vma', 'vmacro19407' => 'vma', 'vmacro19408' => 'vma', 'vmacro21899' => 'vma', 'vmacro21900' => 'vma', 'vmacro21901' => 'vma', 'VMungo0251G0490' => 'vmu', 'VMungo0251G1748' => 'vmu', 'VMungo1309G0421' => 'vmu', 'Zm00001eb086500' => 'zma', 'Zm00001eb150680' => 'zma', 'Zm00001eb162330' => 'zma', 'Zm00001eb203130' => 'zma', 'Zm00001eb369480' => 'zma', 'Zm00001eb382340' => 'zma', 'Zm00001eb416360' => 'zma' ) $gf_id = 'HOM05D000902' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000902' ) $data_identifier = 'HOM05D000902' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 13, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 10, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 6, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 9, 'hma' => (int) 12, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 4, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 6, 'ppa' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 6, 'rch' => (int) 9, 'rsi' => (int) 9, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 12, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 3, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416360' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000902', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '663', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02470' => 'bna', 'A01p16260' => 'bna', 'A02p01680' => 'bna', 'A03p16600' => 'bna', 'A03p55660' => 'bna', 'A03p64160' => 'bna', 'A03p64170' => 'bna', 'A08p31900' => 'bna', 'A09p59530' => 'bna', 'A10p08230' => 'bna', 'A10p25090' => 'bna', 'Aa31LG3G7100' => 'aar', 'Aa31LG3G7110' => 'aar', 'Aa31LG6G13160' => 'aar', 'Aa31LG7G10770' => 'aar', 'Aa31LG7G3830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2723' => 'aag', 'Actinidia08045' => 'ach', 'Actinidia08888' => 'ach', 'Actinidia18333' => 'ach', 'Actinidia19334' => 'ach', 'Actinidia25552' => 'ach', 'Actinidia26089' => 'ach', 'Actinidia30615' => 'ach', 'Actinidia30616' => 'ach', 'Actinidia33083' => 'ach', 'Actinidia35762' => 'ach', 'Ah.02g110620' => 'amhyb', 'Ah.11g046390' => 'amhyb', 'AL1G31670' => 'aly', 'AL6G23730' => 'aly', 'AL7G14740' => 'aly', 'AL7G14750' => 'aly', 'AL7G14760' => 'aly', 'AL7G28220' => 'aly', 'AL8G24940' => 'aly', 'Aqoxy3G01665' => 'aox', 'Aqoxy3G02853' => 'aox', 'Aqoxy5G01513' => 'aox', 'Aqoxy5G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8SKA4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ75LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKDA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0LJZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7REX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZP4YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWX7I5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2QKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS0L9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPCD8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q161UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC7XCF' => 'arhy', 'AT1G19100' => 'ath', 'AT4G24970' => 'ath', 'AT4G36270' => 'ath', 'AT4G36280' => 'ath', 'AT4G36290' => 'ath', 'AT5G13130' => 'ath', 'AT5G50780' => 'ath', 'ATR0582G266' => 'atr', 'ATR0661G195' => 'atr', 'ATR1152G031' => 'atr', 'Atru.chr11.2382' => 'acertr', 'Atru.chr12.2337' => 'acertr', 'Atru.chr3.744' => 'acertr', 'Atru.chr6.1870' => 'acertr', 'Atru.chr9.2515' => 'acertr', 'AUR62004120' => 'cqu', 'AUR62005667' => 'cqu', 'AUR62007634' => 'cqu', 'AUR62008186' => 'cqu', 'AUR62008187' => 'cqu', 'AUR62008188' => 'cqu', 'AUR62027954' => 'cqu', 'AUR62028766' => 'cqu', 'AUR62028767' => 'cqu', 'AUR62028768' => 'cqu', 'AUR62028886' => 'cqu', 'AUR62029563' => 'cqu', 'AUR62038832' => 'cqu', 'BcaB01g04149' => 'bca', 'BcaB03g12940' => 'bca', 'BcaB03g13090' => 'bca', 'BcaB03g14466' => 'bca', 'BcaB05g24035' => 'bca', 'BcaC01g06050' => 'bca', 'BcaC04g19148' => 'bca', 'BcaC04g20761' => 'bca', 'BcaC06g32845' => 'bca', 'BcaC07g41274' => 'bca', 'BcaC09g50827' => 'bca', 'BcaNung00741' => 'bca', 'BcaNung00742' => 'bca', 'BcaNung01859' => 'bca', 'BcaNung03985' => 'bca', 'BcaNung03989' => 'bca', 'BcaNung05661' => 'bca', 'BolC1t00257H' => 'bol', 'BolC1t01956H' => 'bol', 'BolC2t06534H' => 'bol', 'BolC3t14334H' => 'bol', 'BolC5t30451H' => 'bol', 'BolC7t45880H' => 'bol', 'BolC7t46586H' => 'bol', 'BolC8t49301H' => 'bol', 'BolC8t51837H' => 'bol', 'BolC9t56822H' => 'bol', 'BolC9t59235H' => 'bol', 'BraA01t00234Z' => 'bra', 'BraA01t01563Z' => 'bra', 'BraA02t05147Z' => 'bra', 'BraA03t10947Z' => 'bra', 'BraA03t14633Z' => 'bra', 'BraA08t35112Z' => 'bra', 'BraA09t41330Z' => 'bra', 'BraA10t44570Z' => 'bra', 'C01p02670' => 'bna', 'C01p20260' => 'bna', 'C02p05890' => 'bna', 'C03p19530' => 'bna', 'C05p17470' => 'bna', 'C07p53900' => 'bna', 'C07p61630' => 'bna', 'C08p16800' => 'bna', 'C08p42810' => 'bna', 'C09p39480' => 'bna', 'C09p63980' => 'bna', 'CAN.G1001.7' => 'can', 'CAN.G1034.55' => 'can', 'CAN.G143.7' => 'can', 'CAN.G3340.1' => 'can', 'CAN.G358.19' => 'can', 'CAN.G373.2' => 'can', 'CAN.G674.16' => 'can', 'CAN.G674.17' => 'can', 'CAN.G674.18' => 'can', 'CAN.G732.2' => 'can', 'CAN.G732.3' => 'can', 'CAN.G993.39' => 'can', 'CANSAT01G2052' => 'cansat', 'CANSAT80G0070' => 'cansat', 'CANSAT80G0483' => 'cansat', 'CANSAT80G0625' => 'cansat', 'CARHR019690' => 'chi', 'CARHR080280' => 'chi', 'CARHR152750' => 'chi', 'CARHR152760' => 'chi', 'CARHR152770' => 'chi', 'CARHR200340' => 'chi', 'CARHR232370' => 'chi', 'CARHR244670' => 'chi', 'CARHR244680' => 'chi', 'CARHR257520' => 'chi', 'Carub.0001s1872' => 'cru', 'Carub.0006s1130' => 'cru', 'Carub.0007s0396' => 'cru', 'Carub.0007s0397' => 'cru', 'Carub.0007s1608' => 'cru', 'Carub.0008s1068' => 'cru', 'Carub.0008s1077' => 'cru', 'Ca_16158_v3' => 'car', 'Ca_17571_v3' => 'car', 'Ca_21936_v3' => 'car', 'Ca_22350_v3' => 'car', 'CBR_g22445' => 'cbr', 'CBR_g26290' => 'cbr', 'Cc04_g09610' => 'ccan', 'Cc04_g12280' => 'ccan', 'Cc07_g10230' => 'ccan', 'CDE02G0093' => 'cde', 'CDE02G0701' => 'cde', 'CDE04G1050' => 'cde', 'CDE05G1833' => 'cde', 'CDE05G3058' => 'cde', 'CDE05G3380' => 'cde', 'CDE06G0536' => 'cde', 'Cfa006923' => 'cfa', 'Cfa009402' => 'cfa', 'Cfa018751' => 'cfa', 'Cfa019164' => 'cfa', 'Cfa022935' => 'cfa', 'Ciclev10019081m.g' => 'ccl', 'Ciclev10025076m.g' => 'ccl', 'Ciclev10030712m.g' => 'ccl', 'Ciclev10033760m.g' => 'ccl', 'CiPaw.05G105600' => 'cil', 'CiPaw.08G136700' => 'cil', 'CiPaw.11G003900' => 'cil', 'CiPaw.11G023700' => 'cil', 'CiPaw.12G003700' => 'cil', 'ClCG06G017100' => 'cla', 'ClCG06G018110' => 'cla', 'ClCG07G008800' => 'cla', 'ClCG07G015330' => 'cla', 'COL.COLO4_13698' => 'col', 'COL.COLO4_16659' => 'col', 'COL.COLO4_21986' => 'col', 'COL.COLO4_24049' => 'col', 'COL.COLO4_29061' => 'col', 'COL.COLO4_29075' => 'col', 'COL.COLO4_30094' => 'col', 'Cpa.g.c33689' => 'cpa', 'Cpa.g.sc108.39' => 'cpa', 'Cpa.g.sc108.41' => 'cpa', 'Cpa.g.sc1163.1' => 'cpa', 'Cpa.g.sc4.155' => 'cpa', 'Cpa.g.sc6.194' => 'cpa', 'CsaV3_1G000340' => 'csa', 'CsaV3_1G001400' => 'csa', 'CsaV3_4G002220' => 'csa', 'CsaV3_4G005370' => 'csa', 'CSS0007487' => 'camsi', 'CSS0008066' => 'camsi', 'CSS0009120' => 'camsi', 'CSS0015512' => 'camsi', 'CSS0022409' => 'camsi', 'CSS0025358' => 'camsi', 'CSS0044547' => 'camsi', 'DCAR_013057' => 'dca', 'DCAR_015058' => 'dca', 'DCAR_016027' => 'dca', 'DCAR_017327' => 'dca', 'DCAR_020743' => 'dca', 'DCAR_026157' => 'dca', 'DCAR_032339' => 'dca', 'DCAR_032340' => 'dca', 'Dinv11200' => 'din', 'Dinv11201' => 'din', 'Dinv20631' => 'din', 'Dinv23182' => 'din', 'Dinv33466' => 'din', 'Dinv33583' => 'din', 'Dinv38565' => 'din', 'Duzib068G0200' => 'dzi', 'Duzib147G0132' => 'dzi', 'Duzib147G0635' => 'dzi', 'Duzib205G1670' => 'dzi', 'Duzib251G0606' => 'dzi', 'ECA232G3336' => 'eca', 'ECA232G3763' => 'eca', 'ECA232G4845' => 'eca', 'ECA234G1607' => 'eca', 'ECA246G0932' => 'eca', 'ECA247G0781' => 'eca', 'ECA247G1932' => 'eca', 'ECA247G2079' => 'eca', 'ECA247G3338' => 'eca', 'ECA247G4115' => 'eca', 'EL10Ac3g06552' => 'bvu', 'EL10Ac5g10721' => 'bvu', 'EL10Ac5g10722' => 'bvu', 'EL10Ac5g10723' => 'bvu', 'EL10Ac5g11361' => 'bvu', 'EL10Ac6g13553' => 'bvu', 'EL10As8g23872' => 'bvu', 'Eucgr.B00250' => 'egr', 'Eucgr.B00251' => 'egr', 'Eucgr.B03533' => 'egr', 'Eucgr.I02381' => 'egr', 'Eucgr.K02700' => 'egr', 'FAN02G0174' => 'fan', 'FAN02G3146' => 'fan', 'FAN04G1672' => 'fan', 'FAN04G2273' => 'fan', 'FAN05G2791' => 'fan', 'FAN05G4035' => 'fan', 'FAN07G0834' => 'fan', 'FAN08G1198' => 'fan', 'FAN09G4182' => 'fan', 'FAN12G0496' => 'fan', 'FAN13G1027' => 'fan', 'FAN13G2951' => 'fan', 'FAN14G0705' => 'fan', 'FAN14G0720' => 'fan', 'FAN17G0201' => 'fan', 'FAN17G2665' => 'fan', 'FAN18G1456' => 'fan', 'FAN18G1525' => 'fan', 'FAN18G3500' => 'fan', 'FAN28G2670' => 'fan', 'FvH4_1g12391' => 'fve', 'FvH4_4g23220' => 'fve', 'FvH4_5g08810' => 'fve', 'FvH4_5g28960' => 'fve', 'FvH4_6g42820' => 'fve', 'FvH4_6g51110' => 'fve', 'Glyma.02G051802' => 'gma', 'Glyma.04G185300' => 'gma', 'Glyma.05G202900' => 'gma', 'Glyma.08G010300' => 'gma', 'Glyma.16G131900' => 'gma', 'Glyma.17G087900' => 'gma', 'Gohir.A07G048600' => 'ghi', 'Gohir.A11G179000' => 'ghi', 'Gohir.A12G140900' => 'ghi', 'Gohir.A12G140950' => 'ghi', 'Gohir.A12G191700' => 'ghi', 'Gohir.A13G086300' => 'ghi', 'Gohir.D07G052900' => 'ghi', 'Gohir.D11G186600' => 'ghi', 'Gohir.D12G145575' => 'ghi', 'Gohir.D12G145650' => 'ghi', 'Gohir.D12G145725' => 'ghi', 'Gohir.D12G194050' => 'ghi', 'Gohir.D13G091800' => 'ghi', 'Gorai.001G055900' => 'gra', 'Gorai.007G198400' => 'gra', 'Gorai.008G157000' => 'gra', 'Gorai.008G157100' => 'gra', 'Gorai.008G208700' => 'gra', 'Gorai.010G138700' => 'gra', 'GSVIVG01000977001' => 'vvi', 'GSVIVG01007708001' => 'vvi', 'GSVIVG01008587001' => 'vvi', 'GSVIVG01018849001' => 'vvi', 'GSVIVG01032432001' => 'vvi', 'HanXRQChr02g0034131' => 'han', 'HanXRQChr02g0035981' => 'han', 'HanXRQChr02g0035991' => 'han', 'HanXRQChr05g0155611' => 'han', 'HanXRQChr05g0155621' => 'han', 'HanXRQChr08g0236501' => 'han', 'HanXRQChr09g0261321' => 'han', 'HanXRQChr09g0272081' => 'han', 'HanXRQChr10g0310741' => 'han', 'HanXRQChr11g0325591' => 'han', 'HanXRQChr12g0385691' => 'han', 'HanXRQChr13g0387801' => 'han', 'HanXRQChr15g0463011' => 'han', 'Haze_03826' => 'cav', 'Haze_03827' => 'cav', 'Haze_07183' => 'cav', 'Haze_07537' => 'cav', 'Haze_07539' => 'cav', 'Haze_12461' => 'cav', 'Haze_16115' => 'cav', 'Haze_16808' => 'cav', 'Haze_18531' => 'cav', 'Hma1.2p1_0046F.1_g026700' => 'hma', 'Hma1.2p1_0046F.1_g026710' => 'hma', 'Hma1.2p1_0168F.1_g074340' => 'hma', 'Hma1.2p1_0266F.1_g107030' => 'hma', 'Hma1.2p1_0266F.1_g107060' => 'hma', 'Hma1.2p1_0275F.1_g110510' => 'hma', 'Hma1.2p1_0592F.1_g185490' => 'hma', 'Hma1.2p1_0592F.1_g185500' => 'hma', 'Hma1.2p1_0592F.1_g185510' => 'hma', 'Hma1.2p1_0592F.1_g185520' => 'hma', 'Hma1.2p1_0592F.1_g185530' => 'hma', 'Hma1.2p1_0818F.1_g223450' => 'hma', 'HPP92_009708' => 'vpl', 'HPP92_009793' => 'vpl', 'HPP92_009796' => 'vpl', 'HPP92_009797' => 'vpl', 'HPP92_014940' => 'vpl', 'HPP92_014988' => 'vpl', 'Hund02463' => 'sun', 'Hund02760' => 'sun', 'Hund05071' => 'sun', 'Hund10108' => 'sun', 'Hund11204' => 'sun', 'Hund14016' => 'sun', 'Hund16464' => 'sun', 'Lalb_Chr09g0333391' => 'lal', 'Lalb_Chr11g0070461' => 'lal', 'Lalb_Chr12g0201671' => 'lal', 'Lalb_Chr13g0297161' => 'lal', 'Lj1g0002823' => 'lja', 'Lj3C1074T6' => 'lonja', 'Lj4A212T28' => 'lonja', 'Lj4g0005516' => 'lja', 'Lj4g0013705' => 'lja', 'Lj4g0027865' => 'lja', 'Lj5C92G16' => 'lonja', 'Lj5C92T12' => 'lonja', 'Lj7C596T3' => 'lonja', 'Lj9A446G59' => 'lonja', 'Lj9A482G21' => 'lonja', 'Lsat_1_v5_gn_1_28261' => 'lsa', 'Lsat_1_v5_gn_1_28281' => 'lsa', 'Lsat_1_v5_gn_1_32721' => 'lsa', 'Lsat_1_v5_gn_4_151760' => 'lsa', 'Lsat_1_v5_gn_4_2120' => 'lsa', 'Lsat_1_v5_gn_4_75761' => 'lsa', 'Lsat_1_v5_gn_5_10920' => 'lsa', 'Manes.02G099900' => 'mes', 'Manes.11G096200' => 'mes', 'Manes.12G007200' => 'mes', 'Manes.14G048300' => 'mes', 'Manes.17G114700' => 'mes', 'Mapoly0002s0070' => 'mpo', 'Mapoly0029s0099' => 'mpo', 'MBI07_g24742_MAGBIO' => 'mbi', 'MBI10_g27988_MAGBIO' => 'mbi', 'MBI11_g13057_MAGBIO' => 'mbi', 'MD02G1137200' => 'mdo', 'MD06G1137200' => 'mdo', 'MD07G1122300' => 'mdo', 'MD09G1078200' => 'mdo', 'MD13G1123700' => 'mdo', 'MD14G1151900' => 'mdo', 'MD17G1030900' => 'mdo', 'MD17G1068200' => 'mdo', 'MD17G1068600' => 'mdo', 'Medtr3g077540' => 'mtr', 'Medtr4g105530' => 'mtr', 'Medtr8g076580' => 'mtr', 'Medtr8g076590' => 'mtr', 'Medtr8g096410' => 'mtr', 'MELO3C016411.2' => 'cme', 'MELO3C017780.2' => 'cme', 'MELO3C022560.2' => 'cme', 'MELO3C026187.2' => 'cme', 'MELO3C026286.2' => 'cme', 'MELO3C032854.2' => 'cme', 'Migut.H02495' => 'egut', 'Migut.I00561' => 'egut', 'Migut.K01015' => 'egut', 'Migut.K01016' => 'egut', 'Migut.L00743' => 'egut', 'Migut.L00744' => 'egut', 'Migut.L00746' => 'egut', 'Migut.L00798' => 'egut', 'Migut.L00799' => 'egut', 'Migut.N02096' => 'egut', 'MSTRG.11259' => 'ama', 'MSTRG.23142' => 'ama', 'MSTRG.2499' => 'ama', 'Nitab4.5_0000003g0730' => 'nta', 'Nitab4.5_0000137g0020' => 'nta', 'Nitab4.5_0000721g0210' => 'nta', 'Nitab4.5_0000723g0050' => 'nta', 'Nitab4.5_0000913g0070' => 'nta', 'Nitab4.5_0001332g0040' => 'nta', 'Nitab4.5_0001771g0050' => 'nta', 'Nitab4.5_0001918g0050' => 'nta', 'Nitab4.5_0002686g0030' => 'nta', 'Nitab4.5_0003156g0020' => 'nta', 'Nitab4.5_0003383g0040' => 'nta', 'Nitab4.5_0003918g0010' => 'nta', 'Nitab4.5_0006760g0010' => 'nta', 'Nn1g05981' => 'nnu', 'Nn1g06288' => 'nnu', 'Nn3g16371' => 'nnu', 'Nn3g16786' => 'nnu', 'Nn4g22232' => 'nnu', 'Oeu005144.1' => 'oeu', 'Oeu005145.1' => 'oeu', 'Oeu011348.1' => 'oeu', 'Oeu016415.1' => 'oeu', 'Oeu023501.1' => 'oeu', 'Oeu044473.1' => 'oeu', 'Oeu048892.2' => 'oeu', 'Os01g0549200' => 'osa', 'Os02g0469300' => 'osa', 'Os04g0311100' => 'osa', 'Os06g0474900' => 'osa', 'Os10g0181700' => 'osa', 'Os11g0454800' => 'osa', 'Peaxi162Scf00037g00714' => 'pax', 'Peaxi162Scf00084g01217' => 'pax', 'Peaxi162Scf00257g00217' => 'pax', 'Peaxi162Scf00516g00215' => 'pax', 'Peaxi162Scf00689g00123' => 'pax', 'PGR044G2719' => 'pgr', 'PGR083G1360' => 'pgr', 'PGR102G2849' => 'pgr', 'PGR119G2534' => 'pgr', 'PGSC0003DMG400003538' => 'stu', 'PGSC0003DMG400028138' => 'stu', 'PGSC0003DMG400031732' => 'stu', 'PGSC0003DMG400038165' => 'stu', 'Phvul.002G284600' => 'pvu', 'Phvul.003G258200' => 'pvu', 'Phvul.009G176500' => 'pvu', 'Potri.003G167201' => 'ptr', 'Potri.005G118400' => 'ptr', 'Potri.012G089000' => 'ptr', 'Potri.012G102800' => 'ptr', 'Potri.015G079400' => 'ptr', 'Potri.015G100900' => 'ptr', 'Pp3c14_9810' => 'ppa', 'Pp3c15_10450' => 'ppa', 'Pp3c20_19150' => 'ppa', 'Pp3c23_12740' => 'ppa', 'Pp3c23_6310' => 'ppa', 'Pp3c24_3720' => 'ppa', 'Pp3c27_2580' => 'ppa', 'Pp3c9_8990' => 'ppa', 'PRCOL_00002854' => 'pco', 'Prupe.1G221200' => 'ppe', 'Prupe.3G289000' => 'ppe', 'Prupe.5G147000' => 'ppe', 'Prupe.6G157300' => 'ppe', 'Prupe.7G163400' => 'ppe', 'Psat0s2177g0040' => 'psa', 'Psat3g174760' => 'psa', 'Psat3g192160' => 'psa', 'Psat4g058520' => 'psa', 'Psat4g096840' => 'psa', 'Psat7g037320' => 'psa', 'PSO017G1274' => 'pso', 'PSO017G5166' => 'pso', 'PSO063G4558' => 'pso', 'PSO170G4458' => 'pso', 'PSO170G5005' => 'pso', 'PSO210G6156' => 'pso', 'PSO210G6635' => 'pso', 'PSO210G7397' => 'pso', 'PSO210G7700' => 'pso', 'PSO455G0035' => 'pso', 'PSO455G0180' => 'pso', 'PSO478G4515' => 'pso', 'PSO832G1305' => 'pso', 'PSO832G3489' => 'pso', 'QL02p075247' => 'qlo', 'QL03p051148' => 'qlo', 'QL05p010313' => 'qlo', 'QL06p034627' => 'qlo', 'QL10p001889' => 'qlo', 'QL10p010846' => 'qlo', 'RcHm_v2.0_Chr1g0350621' => 'rch', 'RcHm_v2.0_Chr1g0350641' => 'rch', 'RcHm_v2.0_Chr2g0092891' => 'rch', 'RcHm_v2.0_Chr2g0100251' => 'rch', 'RcHm_v2.0_Chr2g0158661' => 'rch', 'RcHm_v2.0_Chr2g0172741' => 'rch', 'RcHm_v2.0_Chr4g0429571' => 'rch', 'RcHm_v2.0_Chr5g0042471' => 'rch', 'RcHm_v2.0_Chr7g0189451' => 'rch', 'Rhsim08G0052000' => 'rsi', 'Rhsim08G0174400' => 'rsi', 'Rhsim08G0193200' => 'rsi', 'Rhsim10G0214800' => 'rsi', 'Rhsim10G0214900' => 'rsi', 'Rhsim10G0215000' => 'rsi', 'Rhsim12G0022900' => 'rsi', 'Rhsim12G0177500' => 'rsi', 'Rhsim12G0177700' => 'rsi', 'Sabra03G0122600' => 'sbr', 'Sabra05G0097400' => 'sbr', 'Sabra12G0064100' => 'sbr', 'Sabra15G0121300' => 'sbr', 'SalBow2G0642' => 'sbo', 'SalBow5G2667' => 'sbo', 'SalBow5G4873' => 'sbo', 'SalBow8G2395' => 'sbo', 'Sc03g0003290' => 'sci', 'Sc10g0010130' => 'sci', 'Sc22g0003650' => 'sci', 'Sed0001603' => 'sed', 'Sed0004259' => 'sed', 'Sed0006789' => 'sed', 'Sed0011838' => 'sed', 'Sed0012964' => 'sed', 'Sed0016383' => 'sed', 'Sed0019010' => 'sed', 'Sed0020188' => 'sed', 'SEGI_04702' => 'sgi', 'SEGI_17231' => 'sgi', 'SEGI_18877' => 'sgi', 'SEGI_25196' => 'sgi', 'SEGI_25515' => 'sgi', 'SEGI_28445' => 'sgi', 'SEGI_37452' => 'sgi', 'SGA_v2.0_scaffold188G40336' => 'sas', 'SGA_v2.0_scaffold228G43247' => 'sas', 'SGA_v2.0_scaffold280G46853' => 'sas', 'SGA_v2.0_scaffold34G13808' => 'sas', 'SGA_v2.0_scaffold40G15576' => 'sas', 'SGA_v2.0_scaffold611G53188' => 'sas', 'SGA_v2.0_scaffold78G25461' => 'sas', 'SGA_v2.0_scaffold90G27888' => 'sas', 'SHI08601' => 'shi', 'SHI08606' => 'shi', 'SHI17117' => 'shi', 'SHI17119' => 'shi', 'SMO118G0201' => 'smo', 'SMO169G0247' => 'smo', 'SMO176G0006' => 'smo', 'SMO176G0015' => 'smo', 'SMO202G0006' => 'smo', 'SMO240G0050' => 'smo', 'SMO286G0009' => 'smo', 'SMO338G0033' => 'smo', 'SMO356G0533' => 'smo', 'SMO364G0382' => 'smo', 'SMO367G0166' => 'smo', 'SMO367G1098' => 'smo', 'Solyc01g009920.3' => 'sly', 'Solyc01g099300.3' => 'sly', 'Solyc02g084700.3' => 'sly', 'Solyc03g097520.3' => 'sly', 'Solyc06g071580.3' => 'sly', 'Solyc10g081760.3' => 'sly', 'Sopen01g005480' => 'spe', 'Sopen01g042850' => 'spe', 'Sopen02g029370' => 'spe', 'Sopen03g028280' => 'spe', 'Sopen06g027870' => 'spe', 'Sopen10g032270' => 'spe', 'Sp5g18180' => 'spa', 'Sp6g12880' => 'spa', 'Sp6g30850' => 'spa', 'Sp7g22960' => 'spa', 'Sp7g34010' => 'spa', 'SpUn1326_0010' => 'spa', 'TAR371G0242' => 'tar', 'TAR622G0638' => 'tar', 'TAR628G1548' => 'tar', 'TAR629G1079' => 'tar', 'TAR629G3413' => 'tar', 'THA.LOC104804249' => 'tha', 'THA.LOC104808315' => 'tha', 'THA.LOC104809238' => 'tha', 'THA.LOC104825484' => 'tha', 'Thecc.01G025500' => 'tca', 'Thecc.03G015800' => 'tca', 'Thecc.03G018000' => 'tca', 'Thecc.03G134800' => 'tca', 'Thecc.04G014700' => 'tca', 'Thhalv10006991m.g' => 'esa', 'Thhalv10012707m.g' => 'esa', 'Thhalv10015739m.g' => 'esa', 'Thhalv10024553m.g' => 'esa', 'Thhalv10024673m.g' => 'esa', 'Thhalv10029187m.g' => 'esa', 'TPR.G12971' => 'tpr', 'TPR.G29396' => 'tpr', 'TPR.G33376' => 'tpr', 'TPR.G35508' => 'tpr', 'TPR.G35516' => 'tpr', 'TPR.G37317' => 'tpr', 'TPR.G37389' => 'tpr', 'TPR.G37523' => 'tpr', 'TPR.G559' => 'tpr', 'TWI14G0070' => 'twi', 'TWI14G0729' => 'twi', 'TWI18G0596' => 'twi', 'TWI39G0780' => 'twi', 'TWI39G0850' => 'twi', 'TWI73G1052' => 'twi', 'unitig_52.g17485' => 'ugi', 'unitig_61.g26355' => 'ugi', 'vmacro01040' => 'vma', 'vmacro16731' => 'vma', 'vmacro18270' => 'vma', 'vmacro19142' => 'vma', 'vmacro19407' => 'vma', 'vmacro19408' => 'vma', 'vmacro21899' => 'vma', 'vmacro21900' => 'vma', 'vmacro21901' => 'vma', 'VMungo0251G0490' => 'vmu', 'VMungo0251G1748' => 'vmu', 'VMungo1309G0421' => 'vmu', 'Zm00001eb086500' => 'zma', 'Zm00001eb150680' => 'zma', 'Zm00001eb162330' => 'zma', 'Zm00001eb203130' => 'zma', 'Zm00001eb369480' => 'zma', 'Zm00001eb382340' => 'zma', 'Zm00001eb416360' => 'zma' ), 'gf_id' => 'HOM05D000902', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000902' ), 'data_identifier' => 'HOM05D000902', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000902', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '663', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02470' => 'bna', 'A01p16260' => 'bna', 'A02p01680' => 'bna', 'A03p16600' => 'bna', 'A03p55660' => 'bna', 'A03p64160' => 'bna', 'A03p64170' => 'bna', 'A08p31900' => 'bna', 'A09p59530' => 'bna', 'A10p08230' => 'bna', 'A10p25090' => 'bna', 'Aa31LG3G7100' => 'aar', 'Aa31LG3G7110' => 'aar', 'Aa31LG6G13160' => 'aar', 'Aa31LG7G10770' => 'aar', 'Aa31LG7G3830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2723' => 'aag', 'Actinidia08045' => 'ach', 'Actinidia08888' => 'ach', 'Actinidia18333' => 'ach', 'Actinidia19334' => 'ach', 'Actinidia25552' => 'ach', 'Actinidia26089' => 'ach', 'Actinidia30615' => 'ach', 'Actinidia30616' => 'ach', 'Actinidia33083' => 'ach', 'Actinidia35762' => 'ach', 'Ah.02g110620' => 'amhyb', 'Ah.11g046390' => 'amhyb', 'AL1G31670' => 'aly', 'AL6G23730' => 'aly', 'AL7G14740' => 'aly', 'AL7G14750' => 'aly', 'AL7G14760' => 'aly', 'AL7G28220' => 'aly', 'AL8G24940' => 'aly', 'Aqoxy3G01665' => 'aox', 'Aqoxy3G02853' => 'aox', 'Aqoxy5G01513' => 'aox', 'Aqoxy5G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8SKA4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ75LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKDA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0LJZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7REX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZP4YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWX7I5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2QKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS0L9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPCD8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q161UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC7XCF' => 'arhy', 'AT1G19100' => 'ath', 'AT4G24970' => 'ath', 'AT4G36270' => 'ath', 'AT4G36280' => 'ath', 'AT4G36290' => 'ath', 'AT5G13130' => 'ath', 'AT5G50780' => 'ath', 'ATR0582G266' => 'atr', 'ATR0661G195' => 'atr', 'ATR1152G031' => 'atr', 'Atru.chr11.2382' => 'acertr', 'Atru.chr12.2337' => 'acertr', 'Atru.chr3.744' => 'acertr', 'Atru.chr6.1870' => 'acertr', 'Atru.chr9.2515' => 'acertr', 'AUR62004120' => 'cqu', 'AUR62005667' => 'cqu', 'AUR62007634' => 'cqu', 'AUR62008186' => 'cqu', 'AUR62008187' => 'cqu', 'AUR62008188' => 'cqu', 'AUR62027954' => 'cqu', 'AUR62028766' => 'cqu', 'AUR62028767' => 'cqu', 'AUR62028768' => 'cqu', 'AUR62028886' => 'cqu', 'AUR62029563' => 'cqu', 'AUR62038832' => 'cqu', 'BcaB01g04149' => 'bca', 'BcaB03g12940' => 'bca', 'BcaB03g13090' => 'bca', 'BcaB03g14466' => 'bca', 'BcaB05g24035' => 'bca', 'BcaC01g06050' => 'bca', 'BcaC04g19148' => 'bca', 'BcaC04g20761' => 'bca', 'BcaC06g32845' => 'bca', 'BcaC07g41274' => 'bca', 'BcaC09g50827' => 'bca', 'BcaNung00741' => 'bca', 'BcaNung00742' => 'bca', 'BcaNung01859' => 'bca', 'BcaNung03985' => 'bca', 'BcaNung03989' => 'bca', 'BcaNung05661' => 'bca', 'BolC1t00257H' => 'bol', 'BolC1t01956H' => 'bol', 'BolC2t06534H' => 'bol', 'BolC3t14334H' => 'bol', 'BolC5t30451H' => 'bol', 'BolC7t45880H' => 'bol', 'BolC7t46586H' => 'bol', 'BolC8t49301H' => 'bol', 'BolC8t51837H' => 'bol', 'BolC9t56822H' => 'bol', 'BolC9t59235H' => 'bol', 'BraA01t00234Z' => 'bra', 'BraA01t01563Z' => 'bra', 'BraA02t05147Z' => 'bra', 'BraA03t10947Z' => 'bra', 'BraA03t14633Z' => 'bra', 'BraA08t35112Z' => 'bra', 'BraA09t41330Z' => 'bra', 'BraA10t44570Z' => 'bra', 'C01p02670' => 'bna', 'C01p20260' => 'bna', 'C02p05890' => 'bna', 'C03p19530' => 'bna', 'C05p17470' => 'bna', 'C07p53900' => 'bna', 'C07p61630' => 'bna', 'C08p16800' => 'bna', 'C08p42810' => 'bna', 'C09p39480' => 'bna', 'C09p63980' => 'bna', 'CAN.G1001.7' => 'can', 'CAN.G1034.55' => 'can', 'CAN.G143.7' => 'can', 'CAN.G3340.1' => 'can', 'CAN.G358.19' => 'can', 'CAN.G373.2' => 'can', 'CAN.G674.16' => 'can', 'CAN.G674.17' => 'can', 'CAN.G674.18' => 'can', 'CAN.G732.2' => 'can', 'CAN.G732.3' => 'can', 'CAN.G993.39' => 'can', 'CANSAT01G2052' => 'cansat', 'CANSAT80G0070' => 'cansat', 'CANSAT80G0483' => 'cansat', 'CANSAT80G0625' => 'cansat', 'CARHR019690' => 'chi', 'CARHR080280' => 'chi', 'CARHR152750' => 'chi', 'CARHR152760' => 'chi', 'CARHR152770' => 'chi', 'CARHR200340' => 'chi', 'CARHR232370' => 'chi', 'CARHR244670' => 'chi', 'CARHR244680' => 'chi', 'CARHR257520' => 'chi', 'Carub.0001s1872' => 'cru', 'Carub.0006s1130' => 'cru', 'Carub.0007s0396' => 'cru', 'Carub.0007s0397' => 'cru', 'Carub.0007s1608' => 'cru', 'Carub.0008s1068' => 'cru', 'Carub.0008s1077' => 'cru', 'Ca_16158_v3' => 'car', 'Ca_17571_v3' => 'car', 'Ca_21936_v3' => 'car', 'Ca_22350_v3' => 'car', 'CBR_g22445' => 'cbr', 'CBR_g26290' => 'cbr', 'Cc04_g09610' => 'ccan', 'Cc04_g12280' => 'ccan', 'Cc07_g10230' => 'ccan', 'CDE02G0093' => 'cde', 'CDE02G0701' => 'cde', 'CDE04G1050' => 'cde', 'CDE05G1833' => 'cde', 'CDE05G3058' => 'cde', 'CDE05G3380' => 'cde', 'CDE06G0536' => 'cde', 'Cfa006923' => 'cfa', 'Cfa009402' => 'cfa', 'Cfa018751' => 'cfa', 'Cfa019164' => 'cfa', 'Cfa022935' => 'cfa', 'Ciclev10019081m.g' => 'ccl', 'Ciclev10025076m.g' => 'ccl', 'Ciclev10030712m.g' => 'ccl', 'Ciclev10033760m.g' => 'ccl', 'CiPaw.05G105600' => 'cil', 'CiPaw.08G136700' => 'cil', 'CiPaw.11G003900' => 'cil', 'CiPaw.11G023700' => 'cil', 'CiPaw.12G003700' => 'cil', 'ClCG06G017100' => 'cla', 'ClCG06G018110' => 'cla', 'ClCG07G008800' => 'cla', 'ClCG07G015330' => 'cla', 'COL.COLO4_13698' => 'col', 'COL.COLO4_16659' => 'col', 'COL.COLO4_21986' => 'col', 'COL.COLO4_24049' => 'col', 'COL.COLO4_29061' => 'col', 'COL.COLO4_29075' => 'col', 'COL.COLO4_30094' => 'col', 'Cpa.g.c33689' => 'cpa', 'Cpa.g.sc108.39' => 'cpa', 'Cpa.g.sc108.41' => 'cpa', 'Cpa.g.sc1163.1' => 'cpa', 'Cpa.g.sc4.155' => 'cpa', 'Cpa.g.sc6.194' => 'cpa', 'CsaV3_1G000340' => 'csa', 'CsaV3_1G001400' => 'csa', 'CsaV3_4G002220' => 'csa', 'CsaV3_4G005370' => 'csa', 'CSS0007487' => 'camsi', 'CSS0008066' => 'camsi', 'CSS0009120' => 'camsi', 'CSS0015512' => 'camsi', 'CSS0022409' => 'camsi', 'CSS0025358' => 'camsi', 'CSS0044547' => 'camsi', 'DCAR_013057' => 'dca', 'DCAR_015058' => 'dca', 'DCAR_016027' => 'dca', 'DCAR_017327' => 'dca', 'DCAR_020743' => 'dca', 'DCAR_026157' => 'dca', 'DCAR_032339' => 'dca', 'DCAR_032340' => 'dca', 'Dinv11200' => 'din', 'Dinv11201' => 'din', 'Dinv20631' => 'din', 'Dinv23182' => 'din', 'Dinv33466' => 'din', 'Dinv33583' => 'din', 'Dinv38565' => 'din', 'Duzib068G0200' => 'dzi', 'Duzib147G0132' => 'dzi', 'Duzib147G0635' => 'dzi', 'Duzib205G1670' => 'dzi', 'Duzib251G0606' => 'dzi', 'ECA232G3336' => 'eca', 'ECA232G3763' => 'eca', 'ECA232G4845' => 'eca', 'ECA234G1607' => 'eca', 'ECA246G0932' => 'eca', 'ECA247G0781' => 'eca', 'ECA247G1932' => 'eca', 'ECA247G2079' => 'eca', 'ECA247G3338' => 'eca', 'ECA247G4115' => 'eca', 'EL10Ac3g06552' => 'bvu', 'EL10Ac5g10721' => 'bvu', 'EL10Ac5g10722' => 'bvu', 'EL10Ac5g10723' => 'bvu', 'EL10Ac5g11361' => 'bvu', 'EL10Ac6g13553' => 'bvu', 'EL10As8g23872' => 'bvu', 'Eucgr.B00250' => 'egr', 'Eucgr.B00251' => 'egr', 'Eucgr.B03533' => 'egr', 'Eucgr.I02381' => 'egr', 'Eucgr.K02700' => 'egr', 'FAN02G0174' => 'fan', 'FAN02G3146' => 'fan', 'FAN04G1672' => 'fan', 'FAN04G2273' => 'fan', 'FAN05G2791' => 'fan', 'FAN05G4035' => 'fan', 'FAN07G0834' => 'fan', 'FAN08G1198' => 'fan', 'FAN09G4182' => 'fan', 'FAN12G0496' => 'fan', 'FAN13G1027' => 'fan', 'FAN13G2951' => 'fan', 'FAN14G0705' => 'fan', 'FAN14G0720' => 'fan', 'FAN17G0201' => 'fan', 'FAN17G2665' => 'fan', 'FAN18G1456' => 'fan', 'FAN18G1525' => 'fan', 'FAN18G3500' => 'fan', 'FAN28G2670' => 'fan', 'FvH4_1g12391' => 'fve', 'FvH4_4g23220' => 'fve', 'FvH4_5g08810' => 'fve', 'FvH4_5g28960' => 'fve', 'FvH4_6g42820' => 'fve', 'FvH4_6g51110' => 'fve', 'Glyma.02G051802' => 'gma', 'Glyma.04G185300' => 'gma', 'Glyma.05G202900' => 'gma', 'Glyma.08G010300' => 'gma', 'Glyma.16G131900' => 'gma', 'Glyma.17G087900' => 'gma', 'Gohir.A07G048600' => 'ghi', 'Gohir.A11G179000' => 'ghi', 'Gohir.A12G140900' => 'ghi', 'Gohir.A12G140950' => 'ghi', 'Gohir.A12G191700' => 'ghi', 'Gohir.A13G086300' => 'ghi', 'Gohir.D07G052900' => 'ghi', 'Gohir.D11G186600' => 'ghi', 'Gohir.D12G145575' => 'ghi', 'Gohir.D12G145650' => 'ghi', 'Gohir.D12G145725' => 'ghi', 'Gohir.D12G194050' => 'ghi', 'Gohir.D13G091800' => 'ghi', 'Gorai.001G055900' => 'gra', 'Gorai.007G198400' => 'gra', 'Gorai.008G157000' => 'gra', 'Gorai.008G157100' => 'gra', 'Gorai.008G208700' => 'gra', 'Gorai.010G138700' => 'gra', 'GSVIVG01000977001' => 'vvi', 'GSVIVG01007708001' => 'vvi', 'GSVIVG01008587001' => 'vvi', 'GSVIVG01018849001' => 'vvi', 'GSVIVG01032432001' => 'vvi', 'HanXRQChr02g0034131' => 'han', 'HanXRQChr02g0035981' => 'han', 'HanXRQChr02g0035991' => 'han', 'HanXRQChr05g0155611' => 'han', 'HanXRQChr05g0155621' => 'han', 'HanXRQChr08g0236501' => 'han', 'HanXRQChr09g0261321' => 'han', 'HanXRQChr09g0272081' => 'han', 'HanXRQChr10g0310741' => 'han', 'HanXRQChr11g0325591' => 'han', 'HanXRQChr12g0385691' => 'han', 'HanXRQChr13g0387801' => 'han', 'HanXRQChr15g0463011' => 'han', 'Haze_03826' => 'cav', 'Haze_03827' => 'cav', 'Haze_07183' => 'cav', 'Haze_07537' => 'cav', 'Haze_07539' => 'cav', 'Haze_12461' => 'cav', 'Haze_16115' => 'cav', 'Haze_16808' => 'cav', 'Haze_18531' => 'cav', 'Hma1.2p1_0046F.1_g026700' => 'hma', 'Hma1.2p1_0046F.1_g026710' => 'hma', 'Hma1.2p1_0168F.1_g074340' => 'hma', 'Hma1.2p1_0266F.1_g107030' => 'hma', 'Hma1.2p1_0266F.1_g107060' => 'hma', 'Hma1.2p1_0275F.1_g110510' => 'hma', 'Hma1.2p1_0592F.1_g185490' => 'hma', 'Hma1.2p1_0592F.1_g185500' => 'hma', 'Hma1.2p1_0592F.1_g185510' => 'hma', 'Hma1.2p1_0592F.1_g185520' => 'hma', 'Hma1.2p1_0592F.1_g185530' => 'hma', 'Hma1.2p1_0818F.1_g223450' => 'hma', 'HPP92_009708' => 'vpl', 'HPP92_009793' => 'vpl', 'HPP92_009796' => 'vpl', 'HPP92_009797' => 'vpl', 'HPP92_014940' => 'vpl', 'HPP92_014988' => 'vpl', 'Hund02463' => 'sun', 'Hund02760' => 'sun', 'Hund05071' => 'sun', 'Hund10108' => 'sun', 'Hund11204' => 'sun', 'Hund14016' => 'sun', 'Hund16464' => 'sun', 'Lalb_Chr09g0333391' => 'lal', 'Lalb_Chr11g0070461' => 'lal', 'Lalb_Chr12g0201671' => 'lal', 'Lalb_Chr13g0297161' => 'lal', 'Lj1g0002823' => 'lja', 'Lj3C1074T6' => 'lonja', 'Lj4A212T28' => 'lonja', 'Lj4g0005516' => 'lja', 'Lj4g0013705' => 'lja', 'Lj4g0027865' => 'lja', 'Lj5C92G16' => 'lonja', 'Lj5C92T12' => 'lonja', 'Lj7C596T3' => 'lonja', 'Lj9A446G59' => 'lonja', 'Lj9A482G21' => 'lonja', 'Lsat_1_v5_gn_1_28261' => 'lsa', 'Lsat_1_v5_gn_1_28281' => 'lsa', 'Lsat_1_v5_gn_1_32721' => 'lsa', 'Lsat_1_v5_gn_4_151760' => 'lsa', 'Lsat_1_v5_gn_4_2120' => 'lsa', 'Lsat_1_v5_gn_4_75761' => 'lsa', 'Lsat_1_v5_gn_5_10920' => 'lsa', 'Manes.02G099900' => 'mes', 'Manes.11G096200' => 'mes', 'Manes.12G007200' => 'mes', 'Manes.14G048300' => 'mes', 'Manes.17G114700' => 'mes', 'Mapoly0002s0070' => 'mpo', 'Mapoly0029s0099' => 'mpo', 'MBI07_g24742_MAGBIO' => 'mbi', 'MBI10_g27988_MAGBIO' => 'mbi', 'MBI11_g13057_MAGBIO' => 'mbi', 'MD02G1137200' => 'mdo', 'MD06G1137200' => 'mdo', 'MD07G1122300' => 'mdo', 'MD09G1078200' => 'mdo', 'MD13G1123700' => 'mdo', 'MD14G1151900' => 'mdo', 'MD17G1030900' => 'mdo', 'MD17G1068200' => 'mdo', 'MD17G1068600' => 'mdo', 'Medtr3g077540' => 'mtr', 'Medtr4g105530' => 'mtr', 'Medtr8g076580' => 'mtr', 'Medtr8g076590' => 'mtr', 'Medtr8g096410' => 'mtr', 'MELO3C016411.2' => 'cme', 'MELO3C017780.2' => 'cme', 'MELO3C022560.2' => 'cme', 'MELO3C026187.2' => 'cme', 'MELO3C026286.2' => 'cme', 'MELO3C032854.2' => 'cme', 'Migut.H02495' => 'egut', 'Migut.I00561' => 'egut', 'Migut.K01015' => 'egut', 'Migut.K01016' => 'egut', 'Migut.L00743' => 'egut', 'Migut.L00744' => 'egut', 'Migut.L00746' => 'egut', 'Migut.L00798' => 'egut', 'Migut.L00799' => 'egut', 'Migut.N02096' => 'egut', 'MSTRG.11259' => 'ama', 'MSTRG.23142' => 'ama', 'MSTRG.2499' => 'ama', 'Nitab4.5_0000003g0730' => 'nta', 'Nitab4.5_0000137g0020' => 'nta', 'Nitab4.5_0000721g0210' => 'nta', 'Nitab4.5_0000723g0050' => 'nta', 'Nitab4.5_0000913g0070' => 'nta', 'Nitab4.5_0001332g0040' => 'nta', 'Nitab4.5_0001771g0050' => 'nta', 'Nitab4.5_0001918g0050' => 'nta', 'Nitab4.5_0002686g0030' => 'nta', 'Nitab4.5_0003156g0020' => 'nta', 'Nitab4.5_0003383g0040' => 'nta', 'Nitab4.5_0003918g0010' => 'nta', 'Nitab4.5_0006760g0010' => 'nta', 'Nn1g05981' => 'nnu', 'Nn1g06288' => 'nnu', 'Nn3g16371' => 'nnu', 'Nn3g16786' => 'nnu', 'Nn4g22232' => 'nnu', 'Oeu005144.1' => 'oeu', 'Oeu005145.1' => 'oeu', 'Oeu011348.1' => 'oeu', 'Oeu016415.1' => 'oeu', 'Oeu023501.1' => 'oeu', 'Oeu044473.1' => 'oeu', 'Oeu048892.2' => 'oeu', 'Os01g0549200' => 'osa', 'Os02g0469300' => 'osa', 'Os04g0311100' => 'osa', 'Os06g0474900' => 'osa', 'Os10g0181700' => 'osa', 'Os11g0454800' => 'osa', 'Peaxi162Scf00037g00714' => 'pax', 'Peaxi162Scf00084g01217' => 'pax', 'Peaxi162Scf00257g00217' => 'pax', 'Peaxi162Scf00516g00215' => 'pax', 'Peaxi162Scf00689g00123' => 'pax', 'PGR044G2719' => 'pgr', 'PGR083G1360' => 'pgr', 'PGR102G2849' => 'pgr', 'PGR119G2534' => 'pgr', 'PGSC0003DMG400003538' => 'stu', 'PGSC0003DMG400028138' => 'stu', 'PGSC0003DMG400031732' => 'stu', 'PGSC0003DMG400038165' => 'stu', 'Phvul.002G284600' => 'pvu', 'Phvul.003G258200' => 'pvu', 'Phvul.009G176500' => 'pvu', 'Potri.003G167201' => 'ptr', 'Potri.005G118400' => 'ptr', 'Potri.012G089000' => 'ptr', 'Potri.012G102800' => 'ptr', 'Potri.015G079400' => 'ptr', 'Potri.015G100900' => 'ptr', 'Pp3c14_9810' => 'ppa', 'Pp3c15_10450' => 'ppa', 'Pp3c20_19150' => 'ppa', 'Pp3c23_12740' => 'ppa', 'Pp3c23_6310' => 'ppa', 'Pp3c24_3720' => 'ppa', 'Pp3c27_2580' => 'ppa', 'Pp3c9_8990' => 'ppa', 'PRCOL_00002854' => 'pco', 'Prupe.1G221200' => 'ppe', 'Prupe.3G289000' => 'ppe', 'Prupe.5G147000' => 'ppe', 'Prupe.6G157300' => 'ppe', 'Prupe.7G163400' => 'ppe', 'Psat0s2177g0040' => 'psa', 'Psat3g174760' => 'psa', 'Psat3g192160' => 'psa', 'Psat4g058520' => 'psa', 'Psat4g096840' => 'psa', 'Psat7g037320' => 'psa', 'PSO017G1274' => 'pso', 'PSO017G5166' => 'pso', 'PSO063G4558' => 'pso', 'PSO170G4458' => 'pso', 'PSO170G5005' => 'pso', 'PSO210G6156' => 'pso', 'PSO210G6635' => 'pso', 'PSO210G7397' => 'pso', 'PSO210G7700' => 'pso', 'PSO455G0035' => 'pso', 'PSO455G0180' => 'pso', 'PSO478G4515' => 'pso', 'PSO832G1305' => 'pso', 'PSO832G3489' => 'pso', 'QL02p075247' => 'qlo', 'QL03p051148' => 'qlo', 'QL05p010313' => 'qlo', 'QL06p034627' => 'qlo', 'QL10p001889' => 'qlo', 'QL10p010846' => 'qlo', 'RcHm_v2.0_Chr1g0350621' => 'rch', 'RcHm_v2.0_Chr1g0350641' => 'rch', 'RcHm_v2.0_Chr2g0092891' => 'rch', 'RcHm_v2.0_Chr2g0100251' => 'rch', 'RcHm_v2.0_Chr2g0158661' => 'rch', 'RcHm_v2.0_Chr2g0172741' => 'rch', 'RcHm_v2.0_Chr4g0429571' => 'rch', 'RcHm_v2.0_Chr5g0042471' => 'rch', 'RcHm_v2.0_Chr7g0189451' => 'rch', 'Rhsim08G0052000' => 'rsi', 'Rhsim08G0174400' => 'rsi', 'Rhsim08G0193200' => 'rsi', 'Rhsim10G0214800' => 'rsi', 'Rhsim10G0214900' => 'rsi', 'Rhsim10G0215000' => 'rsi', 'Rhsim12G0022900' => 'rsi', 'Rhsim12G0177500' => 'rsi', 'Rhsim12G0177700' => 'rsi', 'Sabra03G0122600' => 'sbr', 'Sabra05G0097400' => 'sbr', 'Sabra12G0064100' => 'sbr', 'Sabra15G0121300' => 'sbr', 'SalBow2G0642' => 'sbo', 'SalBow5G2667' => 'sbo', 'SalBow5G4873' => 'sbo', 'SalBow8G2395' => 'sbo', 'Sc03g0003290' => 'sci', 'Sc10g0010130' => 'sci', 'Sc22g0003650' => 'sci', 'Sed0001603' => 'sed', 'Sed0004259' => 'sed', 'Sed0006789' => 'sed', 'Sed0011838' => 'sed', 'Sed0012964' => 'sed', 'Sed0016383' => 'sed', 'Sed0019010' => 'sed', 'Sed0020188' => 'sed', 'SEGI_04702' => 'sgi', 'SEGI_17231' => 'sgi', 'SEGI_18877' => 'sgi', 'SEGI_25196' => 'sgi', 'SEGI_25515' => 'sgi', 'SEGI_28445' => 'sgi', 'SEGI_37452' => 'sgi', 'SGA_v2.0_scaffold188G40336' => 'sas', 'SGA_v2.0_scaffold228G43247' => 'sas', 'SGA_v2.0_scaffold280G46853' => 'sas', 'SGA_v2.0_scaffold34G13808' => 'sas', 'SGA_v2.0_scaffold40G15576' => 'sas', 'SGA_v2.0_scaffold611G53188' => 'sas', 'SGA_v2.0_scaffold78G25461' => 'sas', 'SGA_v2.0_scaffold90G27888' => 'sas', 'SHI08601' => 'shi', 'SHI08606' => 'shi', 'SHI17117' => 'shi', 'SHI17119' => 'shi', 'SMO118G0201' => 'smo', 'SMO169G0247' => 'smo', 'SMO176G0006' => 'smo', 'SMO176G0015' => 'smo', 'SMO202G0006' => 'smo', 'SMO240G0050' => 'smo', 'SMO286G0009' => 'smo', 'SMO338G0033' => 'smo', 'SMO356G0533' => 'smo', 'SMO364G0382' => 'smo', 'SMO367G0166' => 'smo', 'SMO367G1098' => 'smo', 'Solyc01g009920.3' => 'sly', 'Solyc01g099300.3' => 'sly', 'Solyc02g084700.3' => 'sly', 'Solyc03g097520.3' => 'sly', 'Solyc06g071580.3' => 'sly', 'Solyc10g081760.3' => 'sly', 'Sopen01g005480' => 'spe', 'Sopen01g042850' => 'spe', 'Sopen02g029370' => 'spe', 'Sopen03g028280' => 'spe', 'Sopen06g027870' => 'spe', 'Sopen10g032270' => 'spe', 'Sp5g18180' => 'spa', 'Sp6g12880' => 'spa', 'Sp6g30850' => 'spa', 'Sp7g22960' => 'spa', 'Sp7g34010' => 'spa', 'SpUn1326_0010' => 'spa', 'TAR371G0242' => 'tar', 'TAR622G0638' => 'tar', 'TAR628G1548' => 'tar', 'TAR629G1079' => 'tar', 'TAR629G3413' => 'tar', 'THA.LOC104804249' => 'tha', 'THA.LOC104808315' => 'tha', 'THA.LOC104809238' => 'tha', 'THA.LOC104825484' => 'tha', 'Thecc.01G025500' => 'tca', 'Thecc.03G015800' => 'tca', 'Thecc.03G018000' => 'tca', 'Thecc.03G134800' => 'tca', 'Thecc.04G014700' => 'tca', 'Thhalv10006991m.g' => 'esa', 'Thhalv10012707m.g' => 'esa', 'Thhalv10015739m.g' => 'esa', 'Thhalv10024553m.g' => 'esa', 'Thhalv10024673m.g' => 'esa', 'Thhalv10029187m.g' => 'esa', 'TPR.G12971' => 'tpr', 'TPR.G29396' => 'tpr', 'TPR.G33376' => 'tpr', 'TPR.G35508' => 'tpr', 'TPR.G35516' => 'tpr', 'TPR.G37317' => 'tpr', 'TPR.G37389' => 'tpr', 'TPR.G37523' => 'tpr', 'TPR.G559' => 'tpr', 'TWI14G0070' => 'twi', 'TWI14G0729' => 'twi', 'TWI18G0596' => 'twi', 'TWI39G0780' => 'twi', 'TWI39G0850' => 'twi', 'TWI73G1052' => 'twi', 'unitig_52.g17485' => 'ugi', 'unitig_61.g26355' => 'ugi', 'vmacro01040' => 'vma', 'vmacro16731' => 'vma', 'vmacro18270' => 'vma', 'vmacro19142' => 'vma', 'vmacro19407' => 'vma', 'vmacro19408' => 'vma', 'vmacro21899' => 'vma', 'vmacro21900' => 'vma', 'vmacro21901' => 'vma', 'VMungo0251G0490' => 'vmu', 'VMungo0251G1748' => 'vmu', 'VMungo1309G0421' => 'vmu', 'Zm00001eb086500' => 'zma', 'Zm00001eb150680' => 'zma', 'Zm00001eb162330' => 'zma', 'Zm00001eb203130' => 'zma', 'Zm00001eb369480' => 'zma', 'Zm00001eb382340' => 'zma', 'Zm00001eb416360' => 'zma' ) $gf_id = 'HOM05D000902' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000902' ) $data_identifier = 'HOM05D000902' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 13, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 10, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 6, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 9, 'hma' => (int) 12, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 4, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 6, 'ppa' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 6, 'rch' => (int) 9, 'rsi' => (int) 9, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 12, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 3, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416360' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000902', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '663', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02470' => 'bna', 'A01p16260' => 'bna', 'A02p01680' => 'bna', 'A03p16600' => 'bna', 'A03p55660' => 'bna', 'A03p64160' => 'bna', 'A03p64170' => 'bna', 'A08p31900' => 'bna', 'A09p59530' => 'bna', 'A10p08230' => 'bna', 'A10p25090' => 'bna', 'Aa31LG3G7100' => 'aar', 'Aa31LG3G7110' => 'aar', 'Aa31LG6G13160' => 'aar', 'Aa31LG7G10770' => 'aar', 'Aa31LG7G3830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2723' => 'aag', 'Actinidia08045' => 'ach', 'Actinidia08888' => 'ach', 'Actinidia18333' => 'ach', 'Actinidia19334' => 'ach', 'Actinidia25552' => 'ach', 'Actinidia26089' => 'ach', 'Actinidia30615' => 'ach', 'Actinidia30616' => 'ach', 'Actinidia33083' => 'ach', 'Actinidia35762' => 'ach', 'Ah.02g110620' => 'amhyb', 'Ah.11g046390' => 'amhyb', 'AL1G31670' => 'aly', 'AL6G23730' => 'aly', 'AL7G14740' => 'aly', 'AL7G14750' => 'aly', 'AL7G14760' => 'aly', 'AL7G28220' => 'aly', 'AL8G24940' => 'aly', 'Aqoxy3G01665' => 'aox', 'Aqoxy3G02853' => 'aox', 'Aqoxy5G01513' => 'aox', 'Aqoxy5G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8SKA4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ75LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKDA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0LJZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7REX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZP4YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWX7I5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2QKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS0L9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPCD8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q161UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC7XCF' => 'arhy', 'AT1G19100' => 'ath', 'AT4G24970' => 'ath', 'AT4G36270' => 'ath', 'AT4G36280' => 'ath', 'AT4G36290' => 'ath', 'AT5G13130' => 'ath', 'AT5G50780' => 'ath', 'ATR0582G266' => 'atr', 'ATR0661G195' => 'atr', 'ATR1152G031' => 'atr', 'Atru.chr11.2382' => 'acertr', 'Atru.chr12.2337' => 'acertr', 'Atru.chr3.744' => 'acertr', 'Atru.chr6.1870' => 'acertr', 'Atru.chr9.2515' => 'acertr', 'AUR62004120' => 'cqu', 'AUR62005667' => 'cqu', 'AUR62007634' => 'cqu', 'AUR62008186' => 'cqu', 'AUR62008187' => 'cqu', 'AUR62008188' => 'cqu', 'AUR62027954' => 'cqu', 'AUR62028766' => 'cqu', 'AUR62028767' => 'cqu', 'AUR62028768' => 'cqu', 'AUR62028886' => 'cqu', 'AUR62029563' => 'cqu', 'AUR62038832' => 'cqu', 'BcaB01g04149' => 'bca', 'BcaB03g12940' => 'bca', 'BcaB03g13090' => 'bca', 'BcaB03g14466' => 'bca', 'BcaB05g24035' => 'bca', 'BcaC01g06050' => 'bca', 'BcaC04g19148' => 'bca', 'BcaC04g20761' => 'bca', 'BcaC06g32845' => 'bca', 'BcaC07g41274' => 'bca', 'BcaC09g50827' => 'bca', 'BcaNung00741' => 'bca', 'BcaNung00742' => 'bca', 'BcaNung01859' => 'bca', 'BcaNung03985' => 'bca', 'BcaNung03989' => 'bca', 'BcaNung05661' => 'bca', 'BolC1t00257H' => 'bol', 'BolC1t01956H' => 'bol', 'BolC2t06534H' => 'bol', 'BolC3t14334H' => 'bol', 'BolC5t30451H' => 'bol', 'BolC7t45880H' => 'bol', 'BolC7t46586H' => 'bol', 'BolC8t49301H' => 'bol', 'BolC8t51837H' => 'bol', 'BolC9t56822H' => 'bol', 'BolC9t59235H' => 'bol', 'BraA01t00234Z' => 'bra', 'BraA01t01563Z' => 'bra', 'BraA02t05147Z' => 'bra', 'BraA03t10947Z' => 'bra', 'BraA03t14633Z' => 'bra', 'BraA08t35112Z' => 'bra', 'BraA09t41330Z' => 'bra', 'BraA10t44570Z' => 'bra', 'C01p02670' => 'bna', 'C01p20260' => 'bna', 'C02p05890' => 'bna', 'C03p19530' => 'bna', 'C05p17470' => 'bna', 'C07p53900' => 'bna', 'C07p61630' => 'bna', 'C08p16800' => 'bna', 'C08p42810' => 'bna', 'C09p39480' => 'bna', 'C09p63980' => 'bna', 'CAN.G1001.7' => 'can', 'CAN.G1034.55' => 'can', 'CAN.G143.7' => 'can', 'CAN.G3340.1' => 'can', 'CAN.G358.19' => 'can', 'CAN.G373.2' => 'can', 'CAN.G674.16' => 'can', 'CAN.G674.17' => 'can', 'CAN.G674.18' => 'can', 'CAN.G732.2' => 'can', 'CAN.G732.3' => 'can', 'CAN.G993.39' => 'can', 'CANSAT01G2052' => 'cansat', 'CANSAT80G0070' => 'cansat', 'CANSAT80G0483' => 'cansat', 'CANSAT80G0625' => 'cansat', 'CARHR019690' => 'chi', 'CARHR080280' => 'chi', 'CARHR152750' => 'chi', 'CARHR152760' => 'chi', 'CARHR152770' => 'chi', 'CARHR200340' => 'chi', 'CARHR232370' => 'chi', 'CARHR244670' => 'chi', 'CARHR244680' => 'chi', 'CARHR257520' => 'chi', 'Carub.0001s1872' => 'cru', 'Carub.0006s1130' => 'cru', 'Carub.0007s0396' => 'cru', 'Carub.0007s0397' => 'cru', 'Carub.0007s1608' => 'cru', 'Carub.0008s1068' => 'cru', 'Carub.0008s1077' => 'cru', 'Ca_16158_v3' => 'car', 'Ca_17571_v3' => 'car', 'Ca_21936_v3' => 'car', 'Ca_22350_v3' => 'car', 'CBR_g22445' => 'cbr', 'CBR_g26290' => 'cbr', 'Cc04_g09610' => 'ccan', 'Cc04_g12280' => 'ccan', 'Cc07_g10230' => 'ccan', 'CDE02G0093' => 'cde', 'CDE02G0701' => 'cde', 'CDE04G1050' => 'cde', 'CDE05G1833' => 'cde', 'CDE05G3058' => 'cde', 'CDE05G3380' => 'cde', 'CDE06G0536' => 'cde', 'Cfa006923' => 'cfa', 'Cfa009402' => 'cfa', 'Cfa018751' => 'cfa', 'Cfa019164' => 'cfa', 'Cfa022935' => 'cfa', 'Ciclev10019081m.g' => 'ccl', 'Ciclev10025076m.g' => 'ccl', 'Ciclev10030712m.g' => 'ccl', 'Ciclev10033760m.g' => 'ccl', 'CiPaw.05G105600' => 'cil', 'CiPaw.08G136700' => 'cil', 'CiPaw.11G003900' => 'cil', 'CiPaw.11G023700' => 'cil', 'CiPaw.12G003700' => 'cil', 'ClCG06G017100' => 'cla', 'ClCG06G018110' => 'cla', 'ClCG07G008800' => 'cla', 'ClCG07G015330' => 'cla', 'COL.COLO4_13698' => 'col', 'COL.COLO4_16659' => 'col', 'COL.COLO4_21986' => 'col', 'COL.COLO4_24049' => 'col', 'COL.COLO4_29061' => 'col', 'COL.COLO4_29075' => 'col', 'COL.COLO4_30094' => 'col', 'Cpa.g.c33689' => 'cpa', 'Cpa.g.sc108.39' => 'cpa', 'Cpa.g.sc108.41' => 'cpa', 'Cpa.g.sc1163.1' => 'cpa', 'Cpa.g.sc4.155' => 'cpa', 'Cpa.g.sc6.194' => 'cpa', 'CsaV3_1G000340' => 'csa', 'CsaV3_1G001400' => 'csa', 'CsaV3_4G002220' => 'csa', 'CsaV3_4G005370' => 'csa', 'CSS0007487' => 'camsi', 'CSS0008066' => 'camsi', 'CSS0009120' => 'camsi', 'CSS0015512' => 'camsi', 'CSS0022409' => 'camsi', 'CSS0025358' => 'camsi', 'CSS0044547' => 'camsi', 'DCAR_013057' => 'dca', 'DCAR_015058' => 'dca', 'DCAR_016027' => 'dca', 'DCAR_017327' => 'dca', 'DCAR_020743' => 'dca', 'DCAR_026157' => 'dca', 'DCAR_032339' => 'dca', 'DCAR_032340' => 'dca', 'Dinv11200' => 'din', 'Dinv11201' => 'din', 'Dinv20631' => 'din', 'Dinv23182' => 'din', 'Dinv33466' => 'din', 'Dinv33583' => 'din', 'Dinv38565' => 'din', 'Duzib068G0200' => 'dzi', 'Duzib147G0132' => 'dzi', 'Duzib147G0635' => 'dzi', 'Duzib205G1670' => 'dzi', 'Duzib251G0606' => 'dzi', 'ECA232G3336' => 'eca', 'ECA232G3763' => 'eca', 'ECA232G4845' => 'eca', 'ECA234G1607' => 'eca', 'ECA246G0932' => 'eca', 'ECA247G0781' => 'eca', 'ECA247G1932' => 'eca', 'ECA247G2079' => 'eca', 'ECA247G3338' => 'eca', 'ECA247G4115' => 'eca', 'EL10Ac3g06552' => 'bvu', 'EL10Ac5g10721' => 'bvu', 'EL10Ac5g10722' => 'bvu', 'EL10Ac5g10723' => 'bvu', 'EL10Ac5g11361' => 'bvu', 'EL10Ac6g13553' => 'bvu', 'EL10As8g23872' => 'bvu', 'Eucgr.B00250' => 'egr', 'Eucgr.B00251' => 'egr', 'Eucgr.B03533' => 'egr', 'Eucgr.I02381' => 'egr', 'Eucgr.K02700' => 'egr', 'FAN02G0174' => 'fan', 'FAN02G3146' => 'fan', 'FAN04G1672' => 'fan', 'FAN04G2273' => 'fan', 'FAN05G2791' => 'fan', 'FAN05G4035' => 'fan', 'FAN07G0834' => 'fan', 'FAN08G1198' => 'fan', 'FAN09G4182' => 'fan', 'FAN12G0496' => 'fan', 'FAN13G1027' => 'fan', 'FAN13G2951' => 'fan', 'FAN14G0705' => 'fan', 'FAN14G0720' => 'fan', 'FAN17G0201' => 'fan', 'FAN17G2665' => 'fan', 'FAN18G1456' => 'fan', 'FAN18G1525' => 'fan', 'FAN18G3500' => 'fan', 'FAN28G2670' => 'fan', 'FvH4_1g12391' => 'fve', 'FvH4_4g23220' => 'fve', 'FvH4_5g08810' => 'fve', 'FvH4_5g28960' => 'fve', 'FvH4_6g42820' => 'fve', 'FvH4_6g51110' => 'fve', 'Glyma.02G051802' => 'gma', 'Glyma.04G185300' => 'gma', 'Glyma.05G202900' => 'gma', 'Glyma.08G010300' => 'gma', 'Glyma.16G131900' => 'gma', 'Glyma.17G087900' => 'gma', 'Gohir.A07G048600' => 'ghi', 'Gohir.A11G179000' => 'ghi', 'Gohir.A12G140900' => 'ghi', 'Gohir.A12G140950' => 'ghi', 'Gohir.A12G191700' => 'ghi', 'Gohir.A13G086300' => 'ghi', 'Gohir.D07G052900' => 'ghi', 'Gohir.D11G186600' => 'ghi', 'Gohir.D12G145575' => 'ghi', 'Gohir.D12G145650' => 'ghi', 'Gohir.D12G145725' => 'ghi', 'Gohir.D12G194050' => 'ghi', 'Gohir.D13G091800' => 'ghi', 'Gorai.001G055900' => 'gra', 'Gorai.007G198400' => 'gra', 'Gorai.008G157000' => 'gra', 'Gorai.008G157100' => 'gra', 'Gorai.008G208700' => 'gra', 'Gorai.010G138700' => 'gra', 'GSVIVG01000977001' => 'vvi', 'GSVIVG01007708001' => 'vvi', 'GSVIVG01008587001' => 'vvi', 'GSVIVG01018849001' => 'vvi', 'GSVIVG01032432001' => 'vvi', 'HanXRQChr02g0034131' => 'han', 'HanXRQChr02g0035981' => 'han', 'HanXRQChr02g0035991' => 'han', 'HanXRQChr05g0155611' => 'han', 'HanXRQChr05g0155621' => 'han', 'HanXRQChr08g0236501' => 'han', 'HanXRQChr09g0261321' => 'han', 'HanXRQChr09g0272081' => 'han', 'HanXRQChr10g0310741' => 'han', 'HanXRQChr11g0325591' => 'han', 'HanXRQChr12g0385691' => 'han', 'HanXRQChr13g0387801' => 'han', 'HanXRQChr15g0463011' => 'han', 'Haze_03826' => 'cav', 'Haze_03827' => 'cav', 'Haze_07183' => 'cav', 'Haze_07537' => 'cav', 'Haze_07539' => 'cav', 'Haze_12461' => 'cav', 'Haze_16115' => 'cav', 'Haze_16808' => 'cav', 'Haze_18531' => 'cav', 'Hma1.2p1_0046F.1_g026700' => 'hma', 'Hma1.2p1_0046F.1_g026710' => 'hma', 'Hma1.2p1_0168F.1_g074340' => 'hma', 'Hma1.2p1_0266F.1_g107030' => 'hma', 'Hma1.2p1_0266F.1_g107060' => 'hma', 'Hma1.2p1_0275F.1_g110510' => 'hma', 'Hma1.2p1_0592F.1_g185490' => 'hma', 'Hma1.2p1_0592F.1_g185500' => 'hma', 'Hma1.2p1_0592F.1_g185510' => 'hma', 'Hma1.2p1_0592F.1_g185520' => 'hma', 'Hma1.2p1_0592F.1_g185530' => 'hma', 'Hma1.2p1_0818F.1_g223450' => 'hma', 'HPP92_009708' => 'vpl', 'HPP92_009793' => 'vpl', 'HPP92_009796' => 'vpl', 'HPP92_009797' => 'vpl', 'HPP92_014940' => 'vpl', 'HPP92_014988' => 'vpl', 'Hund02463' => 'sun', 'Hund02760' => 'sun', 'Hund05071' => 'sun', 'Hund10108' => 'sun', 'Hund11204' => 'sun', 'Hund14016' => 'sun', 'Hund16464' => 'sun', 'Lalb_Chr09g0333391' => 'lal', 'Lalb_Chr11g0070461' => 'lal', 'Lalb_Chr12g0201671' => 'lal', 'Lalb_Chr13g0297161' => 'lal', 'Lj1g0002823' => 'lja', 'Lj3C1074T6' => 'lonja', 'Lj4A212T28' => 'lonja', 'Lj4g0005516' => 'lja', 'Lj4g0013705' => 'lja', 'Lj4g0027865' => 'lja', 'Lj5C92G16' => 'lonja', 'Lj5C92T12' => 'lonja', 'Lj7C596T3' => 'lonja', 'Lj9A446G59' => 'lonja', 'Lj9A482G21' => 'lonja', 'Lsat_1_v5_gn_1_28261' => 'lsa', 'Lsat_1_v5_gn_1_28281' => 'lsa', 'Lsat_1_v5_gn_1_32721' => 'lsa', 'Lsat_1_v5_gn_4_151760' => 'lsa', 'Lsat_1_v5_gn_4_2120' => 'lsa', 'Lsat_1_v5_gn_4_75761' => 'lsa', 'Lsat_1_v5_gn_5_10920' => 'lsa', 'Manes.02G099900' => 'mes', 'Manes.11G096200' => 'mes', 'Manes.12G007200' => 'mes', 'Manes.14G048300' => 'mes', 'Manes.17G114700' => 'mes', 'Mapoly0002s0070' => 'mpo', 'Mapoly0029s0099' => 'mpo', 'MBI07_g24742_MAGBIO' => 'mbi', 'MBI10_g27988_MAGBIO' => 'mbi', 'MBI11_g13057_MAGBIO' => 'mbi', 'MD02G1137200' => 'mdo', 'MD06G1137200' => 'mdo', 'MD07G1122300' => 'mdo', 'MD09G1078200' => 'mdo', 'MD13G1123700' => 'mdo', 'MD14G1151900' => 'mdo', 'MD17G1030900' => 'mdo', 'MD17G1068200' => 'mdo', 'MD17G1068600' => 'mdo', 'Medtr3g077540' => 'mtr', 'Medtr4g105530' => 'mtr', 'Medtr8g076580' => 'mtr', 'Medtr8g076590' => 'mtr', 'Medtr8g096410' => 'mtr', 'MELO3C016411.2' => 'cme', 'MELO3C017780.2' => 'cme', 'MELO3C022560.2' => 'cme', 'MELO3C026187.2' => 'cme', 'MELO3C026286.2' => 'cme', 'MELO3C032854.2' => 'cme', 'Migut.H02495' => 'egut', 'Migut.I00561' => 'egut', 'Migut.K01015' => 'egut', 'Migut.K01016' => 'egut', 'Migut.L00743' => 'egut', 'Migut.L00744' => 'egut', 'Migut.L00746' => 'egut', 'Migut.L00798' => 'egut', 'Migut.L00799' => 'egut', 'Migut.N02096' => 'egut', 'MSTRG.11259' => 'ama', 'MSTRG.23142' => 'ama', 'MSTRG.2499' => 'ama', 'Nitab4.5_0000003g0730' => 'nta', 'Nitab4.5_0000137g0020' => 'nta', 'Nitab4.5_0000721g0210' => 'nta', 'Nitab4.5_0000723g0050' => 'nta', 'Nitab4.5_0000913g0070' => 'nta', 'Nitab4.5_0001332g0040' => 'nta', 'Nitab4.5_0001771g0050' => 'nta', 'Nitab4.5_0001918g0050' => 'nta', 'Nitab4.5_0002686g0030' => 'nta', 'Nitab4.5_0003156g0020' => 'nta', 'Nitab4.5_0003383g0040' => 'nta', 'Nitab4.5_0003918g0010' => 'nta', 'Nitab4.5_0006760g0010' => 'nta', 'Nn1g05981' => 'nnu', 'Nn1g06288' => 'nnu', 'Nn3g16371' => 'nnu', 'Nn3g16786' => 'nnu', 'Nn4g22232' => 'nnu', 'Oeu005144.1' => 'oeu', 'Oeu005145.1' => 'oeu', 'Oeu011348.1' => 'oeu', 'Oeu016415.1' => 'oeu', 'Oeu023501.1' => 'oeu', 'Oeu044473.1' => 'oeu', 'Oeu048892.2' => 'oeu', 'Os01g0549200' => 'osa', 'Os02g0469300' => 'osa', 'Os04g0311100' => 'osa', 'Os06g0474900' => 'osa', 'Os10g0181700' => 'osa', 'Os11g0454800' => 'osa', 'Peaxi162Scf00037g00714' => 'pax', 'Peaxi162Scf00084g01217' => 'pax', 'Peaxi162Scf00257g00217' => 'pax', 'Peaxi162Scf00516g00215' => 'pax', 'Peaxi162Scf00689g00123' => 'pax', 'PGR044G2719' => 'pgr', 'PGR083G1360' => 'pgr', 'PGR102G2849' => 'pgr', 'PGR119G2534' => 'pgr', 'PGSC0003DMG400003538' => 'stu', 'PGSC0003DMG400028138' => 'stu', 'PGSC0003DMG400031732' => 'stu', 'PGSC0003DMG400038165' => 'stu', 'Phvul.002G284600' => 'pvu', 'Phvul.003G258200' => 'pvu', 'Phvul.009G176500' => 'pvu', 'Potri.003G167201' => 'ptr', 'Potri.005G118400' => 'ptr', 'Potri.012G089000' => 'ptr', 'Potri.012G102800' => 'ptr', 'Potri.015G079400' => 'ptr', 'Potri.015G100900' => 'ptr', 'Pp3c14_9810' => 'ppa', 'Pp3c15_10450' => 'ppa', 'Pp3c20_19150' => 'ppa', 'Pp3c23_12740' => 'ppa', 'Pp3c23_6310' => 'ppa', 'Pp3c24_3720' => 'ppa', 'Pp3c27_2580' => 'ppa', 'Pp3c9_8990' => 'ppa', 'PRCOL_00002854' => 'pco', 'Prupe.1G221200' => 'ppe', 'Prupe.3G289000' => 'ppe', 'Prupe.5G147000' => 'ppe', 'Prupe.6G157300' => 'ppe', 'Prupe.7G163400' => 'ppe', 'Psat0s2177g0040' => 'psa', 'Psat3g174760' => 'psa', 'Psat3g192160' => 'psa', 'Psat4g058520' => 'psa', 'Psat4g096840' => 'psa', 'Psat7g037320' => 'psa', 'PSO017G1274' => 'pso', 'PSO017G5166' => 'pso', 'PSO063G4558' => 'pso', 'PSO170G4458' => 'pso', 'PSO170G5005' => 'pso', 'PSO210G6156' => 'pso', 'PSO210G6635' => 'pso', 'PSO210G7397' => 'pso', 'PSO210G7700' => 'pso', 'PSO455G0035' => 'pso', 'PSO455G0180' => 'pso', 'PSO478G4515' => 'pso', 'PSO832G1305' => 'pso', 'PSO832G3489' => 'pso', 'QL02p075247' => 'qlo', 'QL03p051148' => 'qlo', 'QL05p010313' => 'qlo', 'QL06p034627' => 'qlo', 'QL10p001889' => 'qlo', 'QL10p010846' => 'qlo', 'RcHm_v2.0_Chr1g0350621' => 'rch', 'RcHm_v2.0_Chr1g0350641' => 'rch', 'RcHm_v2.0_Chr2g0092891' => 'rch', 'RcHm_v2.0_Chr2g0100251' => 'rch', 'RcHm_v2.0_Chr2g0158661' => 'rch', 'RcHm_v2.0_Chr2g0172741' => 'rch', 'RcHm_v2.0_Chr4g0429571' => 'rch', 'RcHm_v2.0_Chr5g0042471' => 'rch', 'RcHm_v2.0_Chr7g0189451' => 'rch', 'Rhsim08G0052000' => 'rsi', 'Rhsim08G0174400' => 'rsi', 'Rhsim08G0193200' => 'rsi', 'Rhsim10G0214800' => 'rsi', 'Rhsim10G0214900' => 'rsi', 'Rhsim10G0215000' => 'rsi', 'Rhsim12G0022900' => 'rsi', 'Rhsim12G0177500' => 'rsi', 'Rhsim12G0177700' => 'rsi', 'Sabra03G0122600' => 'sbr', 'Sabra05G0097400' => 'sbr', 'Sabra12G0064100' => 'sbr', 'Sabra15G0121300' => 'sbr', 'SalBow2G0642' => 'sbo', 'SalBow5G2667' => 'sbo', 'SalBow5G4873' => 'sbo', 'SalBow8G2395' => 'sbo', 'Sc03g0003290' => 'sci', 'Sc10g0010130' => 'sci', 'Sc22g0003650' => 'sci', 'Sed0001603' => 'sed', 'Sed0004259' => 'sed', 'Sed0006789' => 'sed', 'Sed0011838' => 'sed', 'Sed0012964' => 'sed', 'Sed0016383' => 'sed', 'Sed0019010' => 'sed', 'Sed0020188' => 'sed', 'SEGI_04702' => 'sgi', 'SEGI_17231' => 'sgi', 'SEGI_18877' => 'sgi', 'SEGI_25196' => 'sgi', 'SEGI_25515' => 'sgi', 'SEGI_28445' => 'sgi', 'SEGI_37452' => 'sgi', 'SGA_v2.0_scaffold188G40336' => 'sas', 'SGA_v2.0_scaffold228G43247' => 'sas', 'SGA_v2.0_scaffold280G46853' => 'sas', 'SGA_v2.0_scaffold34G13808' => 'sas', 'SGA_v2.0_scaffold40G15576' => 'sas', 'SGA_v2.0_scaffold611G53188' => 'sas', 'SGA_v2.0_scaffold78G25461' => 'sas', 'SGA_v2.0_scaffold90G27888' => 'sas', 'SHI08601' => 'shi', 'SHI08606' => 'shi', 'SHI17117' => 'shi', 'SHI17119' => 'shi', 'SMO118G0201' => 'smo', 'SMO169G0247' => 'smo', 'SMO176G0006' => 'smo', 'SMO176G0015' => 'smo', 'SMO202G0006' => 'smo', 'SMO240G0050' => 'smo', 'SMO286G0009' => 'smo', 'SMO338G0033' => 'smo', 'SMO356G0533' => 'smo', 'SMO364G0382' => 'smo', 'SMO367G0166' => 'smo', 'SMO367G1098' => 'smo', 'Solyc01g009920.3' => 'sly', 'Solyc01g099300.3' => 'sly', 'Solyc02g084700.3' => 'sly', 'Solyc03g097520.3' => 'sly', 'Solyc06g071580.3' => 'sly', 'Solyc10g081760.3' => 'sly', 'Sopen01g005480' => 'spe', 'Sopen01g042850' => 'spe', 'Sopen02g029370' => 'spe', 'Sopen03g028280' => 'spe', 'Sopen06g027870' => 'spe', 'Sopen10g032270' => 'spe', 'Sp5g18180' => 'spa', 'Sp6g12880' => 'spa', 'Sp6g30850' => 'spa', 'Sp7g22960' => 'spa', 'Sp7g34010' => 'spa', 'SpUn1326_0010' => 'spa', 'TAR371G0242' => 'tar', 'TAR622G0638' => 'tar', 'TAR628G1548' => 'tar', 'TAR629G1079' => 'tar', 'TAR629G3413' => 'tar', 'THA.LOC104804249' => 'tha', 'THA.LOC104808315' => 'tha', 'THA.LOC104809238' => 'tha', 'THA.LOC104825484' => 'tha', 'Thecc.01G025500' => 'tca', 'Thecc.03G015800' => 'tca', 'Thecc.03G018000' => 'tca', 'Thecc.03G134800' => 'tca', 'Thecc.04G014700' => 'tca', 'Thhalv10006991m.g' => 'esa', 'Thhalv10012707m.g' => 'esa', 'Thhalv10015739m.g' => 'esa', 'Thhalv10024553m.g' => 'esa', 'Thhalv10024673m.g' => 'esa', 'Thhalv10029187m.g' => 'esa', 'TPR.G12971' => 'tpr', 'TPR.G29396' => 'tpr', 'TPR.G33376' => 'tpr', 'TPR.G35508' => 'tpr', 'TPR.G35516' => 'tpr', 'TPR.G37317' => 'tpr', 'TPR.G37389' => 'tpr', 'TPR.G37523' => 'tpr', 'TPR.G559' => 'tpr', 'TWI14G0070' => 'twi', 'TWI14G0729' => 'twi', 'TWI18G0596' => 'twi', 'TWI39G0780' => 'twi', 'TWI39G0850' => 'twi', 'TWI73G1052' => 'twi', 'unitig_52.g17485' => 'ugi', 'unitig_61.g26355' => 'ugi', 'vmacro01040' => 'vma', 'vmacro16731' => 'vma', 'vmacro18270' => 'vma', 'vmacro19142' => 'vma', 'vmacro19407' => 'vma', 'vmacro19408' => 'vma', 'vmacro21899' => 'vma', 'vmacro21900' => 'vma', 'vmacro21901' => 'vma', 'VMungo0251G0490' => 'vmu', 'VMungo0251G1748' => 'vmu', 'VMungo1309G0421' => 'vmu', 'Zm00001eb086500' => 'zma', 'Zm00001eb150680' => 'zma', 'Zm00001eb162330' => 'zma', 'Zm00001eb203130' => 'zma', 'Zm00001eb369480' => 'zma', 'Zm00001eb382340' => 'zma', 'Zm00001eb416360' => 'zma' ), 'gf_id' => 'HOM05D000902', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000902' ), 'data_identifier' => 'HOM05D000902', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000902', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '663', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02470' => 'bna', 'A01p16260' => 'bna', 'A02p01680' => 'bna', 'A03p16600' => 'bna', 'A03p55660' => 'bna', 'A03p64160' => 'bna', 'A03p64170' => 'bna', 'A08p31900' => 'bna', 'A09p59530' => 'bna', 'A10p08230' => 'bna', 'A10p25090' => 'bna', 'Aa31LG3G7100' => 'aar', 'Aa31LG3G7110' => 'aar', 'Aa31LG6G13160' => 'aar', 'Aa31LG7G10770' => 'aar', 'Aa31LG7G3830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2723' => 'aag', 'Actinidia08045' => 'ach', 'Actinidia08888' => 'ach', 'Actinidia18333' => 'ach', 'Actinidia19334' => 'ach', 'Actinidia25552' => 'ach', 'Actinidia26089' => 'ach', 'Actinidia30615' => 'ach', 'Actinidia30616' => 'ach', 'Actinidia33083' => 'ach', 'Actinidia35762' => 'ach', 'Ah.02g110620' => 'amhyb', 'Ah.11g046390' => 'amhyb', 'AL1G31670' => 'aly', 'AL6G23730' => 'aly', 'AL7G14740' => 'aly', 'AL7G14750' => 'aly', 'AL7G14760' => 'aly', 'AL7G28220' => 'aly', 'AL8G24940' => 'aly', 'Aqoxy3G01665' => 'aox', 'Aqoxy3G02853' => 'aox', 'Aqoxy5G01513' => 'aox', 'Aqoxy5G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8SKA4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ75LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKDA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0LJZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7REX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZP4YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWX7I5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2QKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS0L9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPCD8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q161UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC7XCF' => 'arhy', 'AT1G19100' => 'ath', 'AT4G24970' => 'ath', 'AT4G36270' => 'ath', 'AT4G36280' => 'ath', 'AT4G36290' => 'ath', 'AT5G13130' => 'ath', 'AT5G50780' => 'ath', 'ATR0582G266' => 'atr', 'ATR0661G195' => 'atr', 'ATR1152G031' => 'atr', 'Atru.chr11.2382' => 'acertr', 'Atru.chr12.2337' => 'acertr', 'Atru.chr3.744' => 'acertr', 'Atru.chr6.1870' => 'acertr', 'Atru.chr9.2515' => 'acertr', 'AUR62004120' => 'cqu', 'AUR62005667' => 'cqu', 'AUR62007634' => 'cqu', 'AUR62008186' => 'cqu', 'AUR62008187' => 'cqu', 'AUR62008188' => 'cqu', 'AUR62027954' => 'cqu', 'AUR62028766' => 'cqu', 'AUR62028767' => 'cqu', 'AUR62028768' => 'cqu', 'AUR62028886' => 'cqu', 'AUR62029563' => 'cqu', 'AUR62038832' => 'cqu', 'BcaB01g04149' => 'bca', 'BcaB03g12940' => 'bca', 'BcaB03g13090' => 'bca', 'BcaB03g14466' => 'bca', 'BcaB05g24035' => 'bca', 'BcaC01g06050' => 'bca', 'BcaC04g19148' => 'bca', 'BcaC04g20761' => 'bca', 'BcaC06g32845' => 'bca', 'BcaC07g41274' => 'bca', 'BcaC09g50827' => 'bca', 'BcaNung00741' => 'bca', 'BcaNung00742' => 'bca', 'BcaNung01859' => 'bca', 'BcaNung03985' => 'bca', 'BcaNung03989' => 'bca', 'BcaNung05661' => 'bca', 'BolC1t00257H' => 'bol', 'BolC1t01956H' => 'bol', 'BolC2t06534H' => 'bol', 'BolC3t14334H' => 'bol', 'BolC5t30451H' => 'bol', 'BolC7t45880H' => 'bol', 'BolC7t46586H' => 'bol', 'BolC8t49301H' => 'bol', 'BolC8t51837H' => 'bol', 'BolC9t56822H' => 'bol', 'BolC9t59235H' => 'bol', 'BraA01t00234Z' => 'bra', 'BraA01t01563Z' => 'bra', 'BraA02t05147Z' => 'bra', 'BraA03t10947Z' => 'bra', 'BraA03t14633Z' => 'bra', 'BraA08t35112Z' => 'bra', 'BraA09t41330Z' => 'bra', 'BraA10t44570Z' => 'bra', 'C01p02670' => 'bna', 'C01p20260' => 'bna', 'C02p05890' => 'bna', 'C03p19530' => 'bna', 'C05p17470' => 'bna', 'C07p53900' => 'bna', 'C07p61630' => 'bna', 'C08p16800' => 'bna', 'C08p42810' => 'bna', 'C09p39480' => 'bna', 'C09p63980' => 'bna', 'CAN.G1001.7' => 'can', 'CAN.G1034.55' => 'can', 'CAN.G143.7' => 'can', 'CAN.G3340.1' => 'can', 'CAN.G358.19' => 'can', 'CAN.G373.2' => 'can', 'CAN.G674.16' => 'can', 'CAN.G674.17' => 'can', 'CAN.G674.18' => 'can', 'CAN.G732.2' => 'can', 'CAN.G732.3' => 'can', 'CAN.G993.39' => 'can', 'CANSAT01G2052' => 'cansat', 'CANSAT80G0070' => 'cansat', 'CANSAT80G0483' => 'cansat', 'CANSAT80G0625' => 'cansat', 'CARHR019690' => 'chi', 'CARHR080280' => 'chi', 'CARHR152750' => 'chi', 'CARHR152760' => 'chi', 'CARHR152770' => 'chi', 'CARHR200340' => 'chi', 'CARHR232370' => 'chi', 'CARHR244670' => 'chi', 'CARHR244680' => 'chi', 'CARHR257520' => 'chi', 'Carub.0001s1872' => 'cru', 'Carub.0006s1130' => 'cru', 'Carub.0007s0396' => 'cru', 'Carub.0007s0397' => 'cru', 'Carub.0007s1608' => 'cru', 'Carub.0008s1068' => 'cru', 'Carub.0008s1077' => 'cru', 'Ca_16158_v3' => 'car', 'Ca_17571_v3' => 'car', 'Ca_21936_v3' => 'car', 'Ca_22350_v3' => 'car', 'CBR_g22445' => 'cbr', 'CBR_g26290' => 'cbr', 'Cc04_g09610' => 'ccan', 'Cc04_g12280' => 'ccan', 'Cc07_g10230' => 'ccan', 'CDE02G0093' => 'cde', 'CDE02G0701' => 'cde', 'CDE04G1050' => 'cde', 'CDE05G1833' => 'cde', 'CDE05G3058' => 'cde', 'CDE05G3380' => 'cde', 'CDE06G0536' => 'cde', 'Cfa006923' => 'cfa', 'Cfa009402' => 'cfa', 'Cfa018751' => 'cfa', 'Cfa019164' => 'cfa', 'Cfa022935' => 'cfa', 'Ciclev10019081m.g' => 'ccl', 'Ciclev10025076m.g' => 'ccl', 'Ciclev10030712m.g' => 'ccl', 'Ciclev10033760m.g' => 'ccl', 'CiPaw.05G105600' => 'cil', 'CiPaw.08G136700' => 'cil', 'CiPaw.11G003900' => 'cil', 'CiPaw.11G023700' => 'cil', 'CiPaw.12G003700' => 'cil', 'ClCG06G017100' => 'cla', 'ClCG06G018110' => 'cla', 'ClCG07G008800' => 'cla', 'ClCG07G015330' => 'cla', 'COL.COLO4_13698' => 'col', 'COL.COLO4_16659' => 'col', 'COL.COLO4_21986' => 'col', 'COL.COLO4_24049' => 'col', 'COL.COLO4_29061' => 'col', 'COL.COLO4_29075' => 'col', 'COL.COLO4_30094' => 'col', 'Cpa.g.c33689' => 'cpa', 'Cpa.g.sc108.39' => 'cpa', 'Cpa.g.sc108.41' => 'cpa', 'Cpa.g.sc1163.1' => 'cpa', 'Cpa.g.sc4.155' => 'cpa', 'Cpa.g.sc6.194' => 'cpa', 'CsaV3_1G000340' => 'csa', 'CsaV3_1G001400' => 'csa', 'CsaV3_4G002220' => 'csa', 'CsaV3_4G005370' => 'csa', 'CSS0007487' => 'camsi', 'CSS0008066' => 'camsi', 'CSS0009120' => 'camsi', 'CSS0015512' => 'camsi', 'CSS0022409' => 'camsi', 'CSS0025358' => 'camsi', 'CSS0044547' => 'camsi', 'DCAR_013057' => 'dca', 'DCAR_015058' => 'dca', 'DCAR_016027' => 'dca', 'DCAR_017327' => 'dca', 'DCAR_020743' => 'dca', 'DCAR_026157' => 'dca', 'DCAR_032339' => 'dca', 'DCAR_032340' => 'dca', 'Dinv11200' => 'din', 'Dinv11201' => 'din', 'Dinv20631' => 'din', 'Dinv23182' => 'din', 'Dinv33466' => 'din', 'Dinv33583' => 'din', 'Dinv38565' => 'din', 'Duzib068G0200' => 'dzi', 'Duzib147G0132' => 'dzi', 'Duzib147G0635' => 'dzi', 'Duzib205G1670' => 'dzi', 'Duzib251G0606' => 'dzi', 'ECA232G3336' => 'eca', 'ECA232G3763' => 'eca', 'ECA232G4845' => 'eca', 'ECA234G1607' => 'eca', 'ECA246G0932' => 'eca', 'ECA247G0781' => 'eca', 'ECA247G1932' => 'eca', 'ECA247G2079' => 'eca', 'ECA247G3338' => 'eca', 'ECA247G4115' => 'eca', 'EL10Ac3g06552' => 'bvu', 'EL10Ac5g10721' => 'bvu', 'EL10Ac5g10722' => 'bvu', 'EL10Ac5g10723' => 'bvu', 'EL10Ac5g11361' => 'bvu', 'EL10Ac6g13553' => 'bvu', 'EL10As8g23872' => 'bvu', 'Eucgr.B00250' => 'egr', 'Eucgr.B00251' => 'egr', 'Eucgr.B03533' => 'egr', 'Eucgr.I02381' => 'egr', 'Eucgr.K02700' => 'egr', 'FAN02G0174' => 'fan', 'FAN02G3146' => 'fan', 'FAN04G1672' => 'fan', 'FAN04G2273' => 'fan', 'FAN05G2791' => 'fan', 'FAN05G4035' => 'fan', 'FAN07G0834' => 'fan', 'FAN08G1198' => 'fan', 'FAN09G4182' => 'fan', 'FAN12G0496' => 'fan', 'FAN13G1027' => 'fan', 'FAN13G2951' => 'fan', 'FAN14G0705' => 'fan', 'FAN14G0720' => 'fan', 'FAN17G0201' => 'fan', 'FAN17G2665' => 'fan', 'FAN18G1456' => 'fan', 'FAN18G1525' => 'fan', 'FAN18G3500' => 'fan', 'FAN28G2670' => 'fan', 'FvH4_1g12391' => 'fve', 'FvH4_4g23220' => 'fve', 'FvH4_5g08810' => 'fve', 'FvH4_5g28960' => 'fve', 'FvH4_6g42820' => 'fve', 'FvH4_6g51110' => 'fve', 'Glyma.02G051802' => 'gma', 'Glyma.04G185300' => 'gma', 'Glyma.05G202900' => 'gma', 'Glyma.08G010300' => 'gma', 'Glyma.16G131900' => 'gma', 'Glyma.17G087900' => 'gma', 'Gohir.A07G048600' => 'ghi', 'Gohir.A11G179000' => 'ghi', 'Gohir.A12G140900' => 'ghi', 'Gohir.A12G140950' => 'ghi', 'Gohir.A12G191700' => 'ghi', 'Gohir.A13G086300' => 'ghi', 'Gohir.D07G052900' => 'ghi', 'Gohir.D11G186600' => 'ghi', 'Gohir.D12G145575' => 'ghi', 'Gohir.D12G145650' => 'ghi', 'Gohir.D12G145725' => 'ghi', 'Gohir.D12G194050' => 'ghi', 'Gohir.D13G091800' => 'ghi', 'Gorai.001G055900' => 'gra', 'Gorai.007G198400' => 'gra', 'Gorai.008G157000' => 'gra', 'Gorai.008G157100' => 'gra', 'Gorai.008G208700' => 'gra', 'Gorai.010G138700' => 'gra', 'GSVIVG01000977001' => 'vvi', 'GSVIVG01007708001' => 'vvi', 'GSVIVG01008587001' => 'vvi', 'GSVIVG01018849001' => 'vvi', 'GSVIVG01032432001' => 'vvi', 'HanXRQChr02g0034131' => 'han', 'HanXRQChr02g0035981' => 'han', 'HanXRQChr02g0035991' => 'han', 'HanXRQChr05g0155611' => 'han', 'HanXRQChr05g0155621' => 'han', 'HanXRQChr08g0236501' => 'han', 'HanXRQChr09g0261321' => 'han', 'HanXRQChr09g0272081' => 'han', 'HanXRQChr10g0310741' => 'han', 'HanXRQChr11g0325591' => 'han', 'HanXRQChr12g0385691' => 'han', 'HanXRQChr13g0387801' => 'han', 'HanXRQChr15g0463011' => 'han', 'Haze_03826' => 'cav', 'Haze_03827' => 'cav', 'Haze_07183' => 'cav', 'Haze_07537' => 'cav', 'Haze_07539' => 'cav', 'Haze_12461' => 'cav', 'Haze_16115' => 'cav', 'Haze_16808' => 'cav', 'Haze_18531' => 'cav', 'Hma1.2p1_0046F.1_g026700' => 'hma', 'Hma1.2p1_0046F.1_g026710' => 'hma', 'Hma1.2p1_0168F.1_g074340' => 'hma', 'Hma1.2p1_0266F.1_g107030' => 'hma', 'Hma1.2p1_0266F.1_g107060' => 'hma', 'Hma1.2p1_0275F.1_g110510' => 'hma', 'Hma1.2p1_0592F.1_g185490' => 'hma', 'Hma1.2p1_0592F.1_g185500' => 'hma', 'Hma1.2p1_0592F.1_g185510' => 'hma', 'Hma1.2p1_0592F.1_g185520' => 'hma', 'Hma1.2p1_0592F.1_g185530' => 'hma', 'Hma1.2p1_0818F.1_g223450' => 'hma', 'HPP92_009708' => 'vpl', 'HPP92_009793' => 'vpl', 'HPP92_009796' => 'vpl', 'HPP92_009797' => 'vpl', 'HPP92_014940' => 'vpl', 'HPP92_014988' => 'vpl', 'Hund02463' => 'sun', 'Hund02760' => 'sun', 'Hund05071' => 'sun', 'Hund10108' => 'sun', 'Hund11204' => 'sun', 'Hund14016' => 'sun', 'Hund16464' => 'sun', 'Lalb_Chr09g0333391' => 'lal', 'Lalb_Chr11g0070461' => 'lal', 'Lalb_Chr12g0201671' => 'lal', 'Lalb_Chr13g0297161' => 'lal', 'Lj1g0002823' => 'lja', 'Lj3C1074T6' => 'lonja', 'Lj4A212T28' => 'lonja', 'Lj4g0005516' => 'lja', 'Lj4g0013705' => 'lja', 'Lj4g0027865' => 'lja', 'Lj5C92G16' => 'lonja', 'Lj5C92T12' => 'lonja', 'Lj7C596T3' => 'lonja', 'Lj9A446G59' => 'lonja', 'Lj9A482G21' => 'lonja', 'Lsat_1_v5_gn_1_28261' => 'lsa', 'Lsat_1_v5_gn_1_28281' => 'lsa', 'Lsat_1_v5_gn_1_32721' => 'lsa', 'Lsat_1_v5_gn_4_151760' => 'lsa', 'Lsat_1_v5_gn_4_2120' => 'lsa', 'Lsat_1_v5_gn_4_75761' => 'lsa', 'Lsat_1_v5_gn_5_10920' => 'lsa', 'Manes.02G099900' => 'mes', 'Manes.11G096200' => 'mes', 'Manes.12G007200' => 'mes', 'Manes.14G048300' => 'mes', 'Manes.17G114700' => 'mes', 'Mapoly0002s0070' => 'mpo', 'Mapoly0029s0099' => 'mpo', 'MBI07_g24742_MAGBIO' => 'mbi', 'MBI10_g27988_MAGBIO' => 'mbi', 'MBI11_g13057_MAGBIO' => 'mbi', 'MD02G1137200' => 'mdo', 'MD06G1137200' => 'mdo', 'MD07G1122300' => 'mdo', 'MD09G1078200' => 'mdo', 'MD13G1123700' => 'mdo', 'MD14G1151900' => 'mdo', 'MD17G1030900' => 'mdo', 'MD17G1068200' => 'mdo', 'MD17G1068600' => 'mdo', 'Medtr3g077540' => 'mtr', 'Medtr4g105530' => 'mtr', 'Medtr8g076580' => 'mtr', 'Medtr8g076590' => 'mtr', 'Medtr8g096410' => 'mtr', 'MELO3C016411.2' => 'cme', 'MELO3C017780.2' => 'cme', 'MELO3C022560.2' => 'cme', 'MELO3C026187.2' => 'cme', 'MELO3C026286.2' => 'cme', 'MELO3C032854.2' => 'cme', 'Migut.H02495' => 'egut', 'Migut.I00561' => 'egut', 'Migut.K01015' => 'egut', 'Migut.K01016' => 'egut', 'Migut.L00743' => 'egut', 'Migut.L00744' => 'egut', 'Migut.L00746' => 'egut', 'Migut.L00798' => 'egut', 'Migut.L00799' => 'egut', 'Migut.N02096' => 'egut', 'MSTRG.11259' => 'ama', 'MSTRG.23142' => 'ama', 'MSTRG.2499' => 'ama', 'Nitab4.5_0000003g0730' => 'nta', 'Nitab4.5_0000137g0020' => 'nta', 'Nitab4.5_0000721g0210' => 'nta', 'Nitab4.5_0000723g0050' => 'nta', 'Nitab4.5_0000913g0070' => 'nta', 'Nitab4.5_0001332g0040' => 'nta', 'Nitab4.5_0001771g0050' => 'nta', 'Nitab4.5_0001918g0050' => 'nta', 'Nitab4.5_0002686g0030' => 'nta', 'Nitab4.5_0003156g0020' => 'nta', 'Nitab4.5_0003383g0040' => 'nta', 'Nitab4.5_0003918g0010' => 'nta', 'Nitab4.5_0006760g0010' => 'nta', 'Nn1g05981' => 'nnu', 'Nn1g06288' => 'nnu', 'Nn3g16371' => 'nnu', 'Nn3g16786' => 'nnu', 'Nn4g22232' => 'nnu', 'Oeu005144.1' => 'oeu', 'Oeu005145.1' => 'oeu', 'Oeu011348.1' => 'oeu', 'Oeu016415.1' => 'oeu', 'Oeu023501.1' => 'oeu', 'Oeu044473.1' => 'oeu', 'Oeu048892.2' => 'oeu', 'Os01g0549200' => 'osa', 'Os02g0469300' => 'osa', 'Os04g0311100' => 'osa', 'Os06g0474900' => 'osa', 'Os10g0181700' => 'osa', 'Os11g0454800' => 'osa', 'Peaxi162Scf00037g00714' => 'pax', 'Peaxi162Scf00084g01217' => 'pax', 'Peaxi162Scf00257g00217' => 'pax', 'Peaxi162Scf00516g00215' => 'pax', 'Peaxi162Scf00689g00123' => 'pax', 'PGR044G2719' => 'pgr', 'PGR083G1360' => 'pgr', 'PGR102G2849' => 'pgr', 'PGR119G2534' => 'pgr', 'PGSC0003DMG400003538' => 'stu', 'PGSC0003DMG400028138' => 'stu', 'PGSC0003DMG400031732' => 'stu', 'PGSC0003DMG400038165' => 'stu', 'Phvul.002G284600' => 'pvu', 'Phvul.003G258200' => 'pvu', 'Phvul.009G176500' => 'pvu', 'Potri.003G167201' => 'ptr', 'Potri.005G118400' => 'ptr', 'Potri.012G089000' => 'ptr', 'Potri.012G102800' => 'ptr', 'Potri.015G079400' => 'ptr', 'Potri.015G100900' => 'ptr', 'Pp3c14_9810' => 'ppa', 'Pp3c15_10450' => 'ppa', 'Pp3c20_19150' => 'ppa', 'Pp3c23_12740' => 'ppa', 'Pp3c23_6310' => 'ppa', 'Pp3c24_3720' => 'ppa', 'Pp3c27_2580' => 'ppa', 'Pp3c9_8990' => 'ppa', 'PRCOL_00002854' => 'pco', 'Prupe.1G221200' => 'ppe', 'Prupe.3G289000' => 'ppe', 'Prupe.5G147000' => 'ppe', 'Prupe.6G157300' => 'ppe', 'Prupe.7G163400' => 'ppe', 'Psat0s2177g0040' => 'psa', 'Psat3g174760' => 'psa', 'Psat3g192160' => 'psa', 'Psat4g058520' => 'psa', 'Psat4g096840' => 'psa', 'Psat7g037320' => 'psa', 'PSO017G1274' => 'pso', 'PSO017G5166' => 'pso', 'PSO063G4558' => 'pso', 'PSO170G4458' => 'pso', 'PSO170G5005' => 'pso', 'PSO210G6156' => 'pso', 'PSO210G6635' => 'pso', 'PSO210G7397' => 'pso', 'PSO210G7700' => 'pso', 'PSO455G0035' => 'pso', 'PSO455G0180' => 'pso', 'PSO478G4515' => 'pso', 'PSO832G1305' => 'pso', 'PSO832G3489' => 'pso', 'QL02p075247' => 'qlo', 'QL03p051148' => 'qlo', 'QL05p010313' => 'qlo', 'QL06p034627' => 'qlo', 'QL10p001889' => 'qlo', 'QL10p010846' => 'qlo', 'RcHm_v2.0_Chr1g0350621' => 'rch', 'RcHm_v2.0_Chr1g0350641' => 'rch', 'RcHm_v2.0_Chr2g0092891' => 'rch', 'RcHm_v2.0_Chr2g0100251' => 'rch', 'RcHm_v2.0_Chr2g0158661' => 'rch', 'RcHm_v2.0_Chr2g0172741' => 'rch', 'RcHm_v2.0_Chr4g0429571' => 'rch', 'RcHm_v2.0_Chr5g0042471' => 'rch', 'RcHm_v2.0_Chr7g0189451' => 'rch', 'Rhsim08G0052000' => 'rsi', 'Rhsim08G0174400' => 'rsi', 'Rhsim08G0193200' => 'rsi', 'Rhsim10G0214800' => 'rsi', 'Rhsim10G0214900' => 'rsi', 'Rhsim10G0215000' => 'rsi', 'Rhsim12G0022900' => 'rsi', 'Rhsim12G0177500' => 'rsi', 'Rhsim12G0177700' => 'rsi', 'Sabra03G0122600' => 'sbr', 'Sabra05G0097400' => 'sbr', 'Sabra12G0064100' => 'sbr', 'Sabra15G0121300' => 'sbr', 'SalBow2G0642' => 'sbo', 'SalBow5G2667' => 'sbo', 'SalBow5G4873' => 'sbo', 'SalBow8G2395' => 'sbo', 'Sc03g0003290' => 'sci', 'Sc10g0010130' => 'sci', 'Sc22g0003650' => 'sci', 'Sed0001603' => 'sed', 'Sed0004259' => 'sed', 'Sed0006789' => 'sed', 'Sed0011838' => 'sed', 'Sed0012964' => 'sed', 'Sed0016383' => 'sed', 'Sed0019010' => 'sed', 'Sed0020188' => 'sed', 'SEGI_04702' => 'sgi', 'SEGI_17231' => 'sgi', 'SEGI_18877' => 'sgi', 'SEGI_25196' => 'sgi', 'SEGI_25515' => 'sgi', 'SEGI_28445' => 'sgi', 'SEGI_37452' => 'sgi', 'SGA_v2.0_scaffold188G40336' => 'sas', 'SGA_v2.0_scaffold228G43247' => 'sas', 'SGA_v2.0_scaffold280G46853' => 'sas', 'SGA_v2.0_scaffold34G13808' => 'sas', 'SGA_v2.0_scaffold40G15576' => 'sas', 'SGA_v2.0_scaffold611G53188' => 'sas', 'SGA_v2.0_scaffold78G25461' => 'sas', 'SGA_v2.0_scaffold90G27888' => 'sas', 'SHI08601' => 'shi', 'SHI08606' => 'shi', 'SHI17117' => 'shi', 'SHI17119' => 'shi', 'SMO118G0201' => 'smo', 'SMO169G0247' => 'smo', 'SMO176G0006' => 'smo', 'SMO176G0015' => 'smo', 'SMO202G0006' => 'smo', 'SMO240G0050' => 'smo', 'SMO286G0009' => 'smo', 'SMO338G0033' => 'smo', 'SMO356G0533' => 'smo', 'SMO364G0382' => 'smo', 'SMO367G0166' => 'smo', 'SMO367G1098' => 'smo', 'Solyc01g009920.3' => 'sly', 'Solyc01g099300.3' => 'sly', 'Solyc02g084700.3' => 'sly', 'Solyc03g097520.3' => 'sly', 'Solyc06g071580.3' => 'sly', 'Solyc10g081760.3' => 'sly', 'Sopen01g005480' => 'spe', 'Sopen01g042850' => 'spe', 'Sopen02g029370' => 'spe', 'Sopen03g028280' => 'spe', 'Sopen06g027870' => 'spe', 'Sopen10g032270' => 'spe', 'Sp5g18180' => 'spa', 'Sp6g12880' => 'spa', 'Sp6g30850' => 'spa', 'Sp7g22960' => 'spa', 'Sp7g34010' => 'spa', 'SpUn1326_0010' => 'spa', 'TAR371G0242' => 'tar', 'TAR622G0638' => 'tar', 'TAR628G1548' => 'tar', 'TAR629G1079' => 'tar', 'TAR629G3413' => 'tar', 'THA.LOC104804249' => 'tha', 'THA.LOC104808315' => 'tha', 'THA.LOC104809238' => 'tha', 'THA.LOC104825484' => 'tha', 'Thecc.01G025500' => 'tca', 'Thecc.03G015800' => 'tca', 'Thecc.03G018000' => 'tca', 'Thecc.03G134800' => 'tca', 'Thecc.04G014700' => 'tca', 'Thhalv10006991m.g' => 'esa', 'Thhalv10012707m.g' => 'esa', 'Thhalv10015739m.g' => 'esa', 'Thhalv10024553m.g' => 'esa', 'Thhalv10024673m.g' => 'esa', 'Thhalv10029187m.g' => 'esa', 'TPR.G12971' => 'tpr', 'TPR.G29396' => 'tpr', 'TPR.G33376' => 'tpr', 'TPR.G35508' => 'tpr', 'TPR.G35516' => 'tpr', 'TPR.G37317' => 'tpr', 'TPR.G37389' => 'tpr', 'TPR.G37523' => 'tpr', 'TPR.G559' => 'tpr', 'TWI14G0070' => 'twi', 'TWI14G0729' => 'twi', 'TWI18G0596' => 'twi', 'TWI39G0780' => 'twi', 'TWI39G0850' => 'twi', 'TWI73G1052' => 'twi', 'unitig_52.g17485' => 'ugi', 'unitig_61.g26355' => 'ugi', 'vmacro01040' => 'vma', 'vmacro16731' => 'vma', 'vmacro18270' => 'vma', 'vmacro19142' => 'vma', 'vmacro19407' => 'vma', 'vmacro19408' => 'vma', 'vmacro21899' => 'vma', 'vmacro21900' => 'vma', 'vmacro21901' => 'vma', 'VMungo0251G0490' => 'vmu', 'VMungo0251G1748' => 'vmu', 'VMungo1309G0421' => 'vmu', 'Zm00001eb086500' => 'zma', 'Zm00001eb150680' => 'zma', 'Zm00001eb162330' => 'zma', 'Zm00001eb203130' => 'zma', 'Zm00001eb369480' => 'zma', 'Zm00001eb382340' => 'zma', 'Zm00001eb416360' => 'zma' ) $gf_id = 'HOM05D000902' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000902' ) $data_identifier = 'HOM05D000902' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 13, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 10, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 6, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 9, 'hma' => (int) 12, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 4, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 6, 'ppa' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 6, 'rch' => (int) 9, 'rsi' => (int) 9, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 12, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 3, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416360' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000902', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '663', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02470' => 'bna', 'A01p16260' => 'bna', 'A02p01680' => 'bna', 'A03p16600' => 'bna', 'A03p55660' => 'bna', 'A03p64160' => 'bna', 'A03p64170' => 'bna', 'A08p31900' => 'bna', 'A09p59530' => 'bna', 'A10p08230' => 'bna', 'A10p25090' => 'bna', 'Aa31LG3G7100' => 'aar', 'Aa31LG3G7110' => 'aar', 'Aa31LG6G13160' => 'aar', 'Aa31LG7G10770' => 'aar', 'Aa31LG7G3830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2723' => 'aag', 'Actinidia08045' => 'ach', 'Actinidia08888' => 'ach', 'Actinidia18333' => 'ach', 'Actinidia19334' => 'ach', 'Actinidia25552' => 'ach', 'Actinidia26089' => 'ach', 'Actinidia30615' => 'ach', 'Actinidia30616' => 'ach', 'Actinidia33083' => 'ach', 'Actinidia35762' => 'ach', 'Ah.02g110620' => 'amhyb', 'Ah.11g046390' => 'amhyb', 'AL1G31670' => 'aly', 'AL6G23730' => 'aly', 'AL7G14740' => 'aly', 'AL7G14750' => 'aly', 'AL7G14760' => 'aly', 'AL7G28220' => 'aly', 'AL8G24940' => 'aly', 'Aqoxy3G01665' => 'aox', 'Aqoxy3G02853' => 'aox', 'Aqoxy5G01513' => 'aox', 'Aqoxy5G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8SKA4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ75LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKDA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0LJZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7REX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZP4YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWX7I5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2QKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS0L9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPCD8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q161UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC7XCF' => 'arhy', 'AT1G19100' => 'ath', 'AT4G24970' => 'ath', 'AT4G36270' => 'ath', 'AT4G36280' => 'ath', 'AT4G36290' => 'ath', 'AT5G13130' => 'ath', 'AT5G50780' => 'ath', 'ATR0582G266' => 'atr', 'ATR0661G195' => 'atr', 'ATR1152G031' => 'atr', 'Atru.chr11.2382' => 'acertr', 'Atru.chr12.2337' => 'acertr', 'Atru.chr3.744' => 'acertr', 'Atru.chr6.1870' => 'acertr', 'Atru.chr9.2515' => 'acertr', 'AUR62004120' => 'cqu', 'AUR62005667' => 'cqu', 'AUR62007634' => 'cqu', 'AUR62008186' => 'cqu', 'AUR62008187' => 'cqu', 'AUR62008188' => 'cqu', 'AUR62027954' => 'cqu', 'AUR62028766' => 'cqu', 'AUR62028767' => 'cqu', 'AUR62028768' => 'cqu', 'AUR62028886' => 'cqu', 'AUR62029563' => 'cqu', 'AUR62038832' => 'cqu', 'BcaB01g04149' => 'bca', 'BcaB03g12940' => 'bca', 'BcaB03g13090' => 'bca', 'BcaB03g14466' => 'bca', 'BcaB05g24035' => 'bca', 'BcaC01g06050' => 'bca', 'BcaC04g19148' => 'bca', 'BcaC04g20761' => 'bca', 'BcaC06g32845' => 'bca', 'BcaC07g41274' => 'bca', 'BcaC09g50827' => 'bca', 'BcaNung00741' => 'bca', 'BcaNung00742' => 'bca', 'BcaNung01859' => 'bca', 'BcaNung03985' => 'bca', 'BcaNung03989' => 'bca', 'BcaNung05661' => 'bca', 'BolC1t00257H' => 'bol', 'BolC1t01956H' => 'bol', 'BolC2t06534H' => 'bol', 'BolC3t14334H' => 'bol', 'BolC5t30451H' => 'bol', 'BolC7t45880H' => 'bol', 'BolC7t46586H' => 'bol', 'BolC8t49301H' => 'bol', 'BolC8t51837H' => 'bol', 'BolC9t56822H' => 'bol', 'BolC9t59235H' => 'bol', 'BraA01t00234Z' => 'bra', 'BraA01t01563Z' => 'bra', 'BraA02t05147Z' => 'bra', 'BraA03t10947Z' => 'bra', 'BraA03t14633Z' => 'bra', 'BraA08t35112Z' => 'bra', 'BraA09t41330Z' => 'bra', 'BraA10t44570Z' => 'bra', 'C01p02670' => 'bna', 'C01p20260' => 'bna', 'C02p05890' => 'bna', 'C03p19530' => 'bna', 'C05p17470' => 'bna', 'C07p53900' => 'bna', 'C07p61630' => 'bna', 'C08p16800' => 'bna', 'C08p42810' => 'bna', 'C09p39480' => 'bna', 'C09p63980' => 'bna', 'CAN.G1001.7' => 'can', 'CAN.G1034.55' => 'can', 'CAN.G143.7' => 'can', 'CAN.G3340.1' => 'can', 'CAN.G358.19' => 'can', 'CAN.G373.2' => 'can', 'CAN.G674.16' => 'can', 'CAN.G674.17' => 'can', 'CAN.G674.18' => 'can', 'CAN.G732.2' => 'can', 'CAN.G732.3' => 'can', 'CAN.G993.39' => 'can', 'CANSAT01G2052' => 'cansat', 'CANSAT80G0070' => 'cansat', 'CANSAT80G0483' => 'cansat', 'CANSAT80G0625' => 'cansat', 'CARHR019690' => 'chi', 'CARHR080280' => 'chi', 'CARHR152750' => 'chi', 'CARHR152760' => 'chi', 'CARHR152770' => 'chi', 'CARHR200340' => 'chi', 'CARHR232370' => 'chi', 'CARHR244670' => 'chi', 'CARHR244680' => 'chi', 'CARHR257520' => 'chi', 'Carub.0001s1872' => 'cru', 'Carub.0006s1130' => 'cru', 'Carub.0007s0396' => 'cru', 'Carub.0007s0397' => 'cru', 'Carub.0007s1608' => 'cru', 'Carub.0008s1068' => 'cru', 'Carub.0008s1077' => 'cru', 'Ca_16158_v3' => 'car', 'Ca_17571_v3' => 'car', 'Ca_21936_v3' => 'car', 'Ca_22350_v3' => 'car', 'CBR_g22445' => 'cbr', 'CBR_g26290' => 'cbr', 'Cc04_g09610' => 'ccan', 'Cc04_g12280' => 'ccan', 'Cc07_g10230' => 'ccan', 'CDE02G0093' => 'cde', 'CDE02G0701' => 'cde', 'CDE04G1050' => 'cde', 'CDE05G1833' => 'cde', 'CDE05G3058' => 'cde', 'CDE05G3380' => 'cde', 'CDE06G0536' => 'cde', 'Cfa006923' => 'cfa', 'Cfa009402' => 'cfa', 'Cfa018751' => 'cfa', 'Cfa019164' => 'cfa', 'Cfa022935' => 'cfa', 'Ciclev10019081m.g' => 'ccl', 'Ciclev10025076m.g' => 'ccl', 'Ciclev10030712m.g' => 'ccl', 'Ciclev10033760m.g' => 'ccl', 'CiPaw.05G105600' => 'cil', 'CiPaw.08G136700' => 'cil', 'CiPaw.11G003900' => 'cil', 'CiPaw.11G023700' => 'cil', 'CiPaw.12G003700' => 'cil', 'ClCG06G017100' => 'cla', 'ClCG06G018110' => 'cla', 'ClCG07G008800' => 'cla', 'ClCG07G015330' => 'cla', 'COL.COLO4_13698' => 'col', 'COL.COLO4_16659' => 'col', 'COL.COLO4_21986' => 'col', 'COL.COLO4_24049' => 'col', 'COL.COLO4_29061' => 'col', 'COL.COLO4_29075' => 'col', 'COL.COLO4_30094' => 'col', 'Cpa.g.c33689' => 'cpa', 'Cpa.g.sc108.39' => 'cpa', 'Cpa.g.sc108.41' => 'cpa', 'Cpa.g.sc1163.1' => 'cpa', 'Cpa.g.sc4.155' => 'cpa', 'Cpa.g.sc6.194' => 'cpa', 'CsaV3_1G000340' => 'csa', 'CsaV3_1G001400' => 'csa', 'CsaV3_4G002220' => 'csa', 'CsaV3_4G005370' => 'csa', 'CSS0007487' => 'camsi', 'CSS0008066' => 'camsi', 'CSS0009120' => 'camsi', 'CSS0015512' => 'camsi', 'CSS0022409' => 'camsi', 'CSS0025358' => 'camsi', 'CSS0044547' => 'camsi', 'DCAR_013057' => 'dca', 'DCAR_015058' => 'dca', 'DCAR_016027' => 'dca', 'DCAR_017327' => 'dca', 'DCAR_020743' => 'dca', 'DCAR_026157' => 'dca', 'DCAR_032339' => 'dca', 'DCAR_032340' => 'dca', 'Dinv11200' => 'din', 'Dinv11201' => 'din', 'Dinv20631' => 'din', 'Dinv23182' => 'din', 'Dinv33466' => 'din', 'Dinv33583' => 'din', 'Dinv38565' => 'din', 'Duzib068G0200' => 'dzi', 'Duzib147G0132' => 'dzi', 'Duzib147G0635' => 'dzi', 'Duzib205G1670' => 'dzi', 'Duzib251G0606' => 'dzi', 'ECA232G3336' => 'eca', 'ECA232G3763' => 'eca', 'ECA232G4845' => 'eca', 'ECA234G1607' => 'eca', 'ECA246G0932' => 'eca', 'ECA247G0781' => 'eca', 'ECA247G1932' => 'eca', 'ECA247G2079' => 'eca', 'ECA247G3338' => 'eca', 'ECA247G4115' => 'eca', 'EL10Ac3g06552' => 'bvu', 'EL10Ac5g10721' => 'bvu', 'EL10Ac5g10722' => 'bvu', 'EL10Ac5g10723' => 'bvu', 'EL10Ac5g11361' => 'bvu', 'EL10Ac6g13553' => 'bvu', 'EL10As8g23872' => 'bvu', 'Eucgr.B00250' => 'egr', 'Eucgr.B00251' => 'egr', 'Eucgr.B03533' => 'egr', 'Eucgr.I02381' => 'egr', 'Eucgr.K02700' => 'egr', 'FAN02G0174' => 'fan', 'FAN02G3146' => 'fan', 'FAN04G1672' => 'fan', 'FAN04G2273' => 'fan', 'FAN05G2791' => 'fan', 'FAN05G4035' => 'fan', 'FAN07G0834' => 'fan', 'FAN08G1198' => 'fan', 'FAN09G4182' => 'fan', 'FAN12G0496' => 'fan', 'FAN13G1027' => 'fan', 'FAN13G2951' => 'fan', 'FAN14G0705' => 'fan', 'FAN14G0720' => 'fan', 'FAN17G0201' => 'fan', 'FAN17G2665' => 'fan', 'FAN18G1456' => 'fan', 'FAN18G1525' => 'fan', 'FAN18G3500' => 'fan', 'FAN28G2670' => 'fan', 'FvH4_1g12391' => 'fve', 'FvH4_4g23220' => 'fve', 'FvH4_5g08810' => 'fve', 'FvH4_5g28960' => 'fve', 'FvH4_6g42820' => 'fve', 'FvH4_6g51110' => 'fve', 'Glyma.02G051802' => 'gma', 'Glyma.04G185300' => 'gma', 'Glyma.05G202900' => 'gma', 'Glyma.08G010300' => 'gma', 'Glyma.16G131900' => 'gma', 'Glyma.17G087900' => 'gma', 'Gohir.A07G048600' => 'ghi', 'Gohir.A11G179000' => 'ghi', 'Gohir.A12G140900' => 'ghi', 'Gohir.A12G140950' => 'ghi', 'Gohir.A12G191700' => 'ghi', 'Gohir.A13G086300' => 'ghi', 'Gohir.D07G052900' => 'ghi', 'Gohir.D11G186600' => 'ghi', 'Gohir.D12G145575' => 'ghi', 'Gohir.D12G145650' => 'ghi', 'Gohir.D12G145725' => 'ghi', 'Gohir.D12G194050' => 'ghi', 'Gohir.D13G091800' => 'ghi', 'Gorai.001G055900' => 'gra', 'Gorai.007G198400' => 'gra', 'Gorai.008G157000' => 'gra', 'Gorai.008G157100' => 'gra', 'Gorai.008G208700' => 'gra', 'Gorai.010G138700' => 'gra', 'GSVIVG01000977001' => 'vvi', 'GSVIVG01007708001' => 'vvi', 'GSVIVG01008587001' => 'vvi', 'GSVIVG01018849001' => 'vvi', 'GSVIVG01032432001' => 'vvi', 'HanXRQChr02g0034131' => 'han', 'HanXRQChr02g0035981' => 'han', 'HanXRQChr02g0035991' => 'han', 'HanXRQChr05g0155611' => 'han', 'HanXRQChr05g0155621' => 'han', 'HanXRQChr08g0236501' => 'han', 'HanXRQChr09g0261321' => 'han', 'HanXRQChr09g0272081' => 'han', 'HanXRQChr10g0310741' => 'han', 'HanXRQChr11g0325591' => 'han', 'HanXRQChr12g0385691' => 'han', 'HanXRQChr13g0387801' => 'han', 'HanXRQChr15g0463011' => 'han', 'Haze_03826' => 'cav', 'Haze_03827' => 'cav', 'Haze_07183' => 'cav', 'Haze_07537' => 'cav', 'Haze_07539' => 'cav', 'Haze_12461' => 'cav', 'Haze_16115' => 'cav', 'Haze_16808' => 'cav', 'Haze_18531' => 'cav', 'Hma1.2p1_0046F.1_g026700' => 'hma', 'Hma1.2p1_0046F.1_g026710' => 'hma', 'Hma1.2p1_0168F.1_g074340' => 'hma', 'Hma1.2p1_0266F.1_g107030' => 'hma', 'Hma1.2p1_0266F.1_g107060' => 'hma', 'Hma1.2p1_0275F.1_g110510' => 'hma', 'Hma1.2p1_0592F.1_g185490' => 'hma', 'Hma1.2p1_0592F.1_g185500' => 'hma', 'Hma1.2p1_0592F.1_g185510' => 'hma', 'Hma1.2p1_0592F.1_g185520' => 'hma', 'Hma1.2p1_0592F.1_g185530' => 'hma', 'Hma1.2p1_0818F.1_g223450' => 'hma', 'HPP92_009708' => 'vpl', 'HPP92_009793' => 'vpl', 'HPP92_009796' => 'vpl', 'HPP92_009797' => 'vpl', 'HPP92_014940' => 'vpl', 'HPP92_014988' => 'vpl', 'Hund02463' => 'sun', 'Hund02760' => 'sun', 'Hund05071' => 'sun', 'Hund10108' => 'sun', 'Hund11204' => 'sun', 'Hund14016' => 'sun', 'Hund16464' => 'sun', 'Lalb_Chr09g0333391' => 'lal', 'Lalb_Chr11g0070461' => 'lal', 'Lalb_Chr12g0201671' => 'lal', 'Lalb_Chr13g0297161' => 'lal', 'Lj1g0002823' => 'lja', 'Lj3C1074T6' => 'lonja', 'Lj4A212T28' => 'lonja', 'Lj4g0005516' => 'lja', 'Lj4g0013705' => 'lja', 'Lj4g0027865' => 'lja', 'Lj5C92G16' => 'lonja', 'Lj5C92T12' => 'lonja', 'Lj7C596T3' => 'lonja', 'Lj9A446G59' => 'lonja', 'Lj9A482G21' => 'lonja', 'Lsat_1_v5_gn_1_28261' => 'lsa', 'Lsat_1_v5_gn_1_28281' => 'lsa', 'Lsat_1_v5_gn_1_32721' => 'lsa', 'Lsat_1_v5_gn_4_151760' => 'lsa', 'Lsat_1_v5_gn_4_2120' => 'lsa', 'Lsat_1_v5_gn_4_75761' => 'lsa', 'Lsat_1_v5_gn_5_10920' => 'lsa', 'Manes.02G099900' => 'mes', 'Manes.11G096200' => 'mes', 'Manes.12G007200' => 'mes', 'Manes.14G048300' => 'mes', 'Manes.17G114700' => 'mes', 'Mapoly0002s0070' => 'mpo', 'Mapoly0029s0099' => 'mpo', 'MBI07_g24742_MAGBIO' => 'mbi', 'MBI10_g27988_MAGBIO' => 'mbi', 'MBI11_g13057_MAGBIO' => 'mbi', 'MD02G1137200' => 'mdo', 'MD06G1137200' => 'mdo', 'MD07G1122300' => 'mdo', 'MD09G1078200' => 'mdo', 'MD13G1123700' => 'mdo', 'MD14G1151900' => 'mdo', 'MD17G1030900' => 'mdo', 'MD17G1068200' => 'mdo', 'MD17G1068600' => 'mdo', 'Medtr3g077540' => 'mtr', 'Medtr4g105530' => 'mtr', 'Medtr8g076580' => 'mtr', 'Medtr8g076590' => 'mtr', 'Medtr8g096410' => 'mtr', 'MELO3C016411.2' => 'cme', 'MELO3C017780.2' => 'cme', 'MELO3C022560.2' => 'cme', 'MELO3C026187.2' => 'cme', 'MELO3C026286.2' => 'cme', 'MELO3C032854.2' => 'cme', 'Migut.H02495' => 'egut', 'Migut.I00561' => 'egut', 'Migut.K01015' => 'egut', 'Migut.K01016' => 'egut', 'Migut.L00743' => 'egut', 'Migut.L00744' => 'egut', 'Migut.L00746' => 'egut', 'Migut.L00798' => 'egut', 'Migut.L00799' => 'egut', 'Migut.N02096' => 'egut', 'MSTRG.11259' => 'ama', 'MSTRG.23142' => 'ama', 'MSTRG.2499' => 'ama', 'Nitab4.5_0000003g0730' => 'nta', 'Nitab4.5_0000137g0020' => 'nta', 'Nitab4.5_0000721g0210' => 'nta', 'Nitab4.5_0000723g0050' => 'nta', 'Nitab4.5_0000913g0070' => 'nta', 'Nitab4.5_0001332g0040' => 'nta', 'Nitab4.5_0001771g0050' => 'nta', 'Nitab4.5_0001918g0050' => 'nta', 'Nitab4.5_0002686g0030' => 'nta', 'Nitab4.5_0003156g0020' => 'nta', 'Nitab4.5_0003383g0040' => 'nta', 'Nitab4.5_0003918g0010' => 'nta', 'Nitab4.5_0006760g0010' => 'nta', 'Nn1g05981' => 'nnu', 'Nn1g06288' => 'nnu', 'Nn3g16371' => 'nnu', 'Nn3g16786' => 'nnu', 'Nn4g22232' => 'nnu', 'Oeu005144.1' => 'oeu', 'Oeu005145.1' => 'oeu', 'Oeu011348.1' => 'oeu', 'Oeu016415.1' => 'oeu', 'Oeu023501.1' => 'oeu', 'Oeu044473.1' => 'oeu', 'Oeu048892.2' => 'oeu', 'Os01g0549200' => 'osa', 'Os02g0469300' => 'osa', 'Os04g0311100' => 'osa', 'Os06g0474900' => 'osa', 'Os10g0181700' => 'osa', 'Os11g0454800' => 'osa', 'Peaxi162Scf00037g00714' => 'pax', 'Peaxi162Scf00084g01217' => 'pax', 'Peaxi162Scf00257g00217' => 'pax', 'Peaxi162Scf00516g00215' => 'pax', 'Peaxi162Scf00689g00123' => 'pax', 'PGR044G2719' => 'pgr', 'PGR083G1360' => 'pgr', 'PGR102G2849' => 'pgr', 'PGR119G2534' => 'pgr', 'PGSC0003DMG400003538' => 'stu', 'PGSC0003DMG400028138' => 'stu', 'PGSC0003DMG400031732' => 'stu', 'PGSC0003DMG400038165' => 'stu', 'Phvul.002G284600' => 'pvu', 'Phvul.003G258200' => 'pvu', 'Phvul.009G176500' => 'pvu', 'Potri.003G167201' => 'ptr', 'Potri.005G118400' => 'ptr', 'Potri.012G089000' => 'ptr', 'Potri.012G102800' => 'ptr', 'Potri.015G079400' => 'ptr', 'Potri.015G100900' => 'ptr', 'Pp3c14_9810' => 'ppa', 'Pp3c15_10450' => 'ppa', 'Pp3c20_19150' => 'ppa', 'Pp3c23_12740' => 'ppa', 'Pp3c23_6310' => 'ppa', 'Pp3c24_3720' => 'ppa', 'Pp3c27_2580' => 'ppa', 'Pp3c9_8990' => 'ppa', 'PRCOL_00002854' => 'pco', 'Prupe.1G221200' => 'ppe', 'Prupe.3G289000' => 'ppe', 'Prupe.5G147000' => 'ppe', 'Prupe.6G157300' => 'ppe', 'Prupe.7G163400' => 'ppe', 'Psat0s2177g0040' => 'psa', 'Psat3g174760' => 'psa', 'Psat3g192160' => 'psa', 'Psat4g058520' => 'psa', 'Psat4g096840' => 'psa', 'Psat7g037320' => 'psa', 'PSO017G1274' => 'pso', 'PSO017G5166' => 'pso', 'PSO063G4558' => 'pso', 'PSO170G4458' => 'pso', 'PSO170G5005' => 'pso', 'PSO210G6156' => 'pso', 'PSO210G6635' => 'pso', 'PSO210G7397' => 'pso', 'PSO210G7700' => 'pso', 'PSO455G0035' => 'pso', 'PSO455G0180' => 'pso', 'PSO478G4515' => 'pso', 'PSO832G1305' => 'pso', 'PSO832G3489' => 'pso', 'QL02p075247' => 'qlo', 'QL03p051148' => 'qlo', 'QL05p010313' => 'qlo', 'QL06p034627' => 'qlo', 'QL10p001889' => 'qlo', 'QL10p010846' => 'qlo', 'RcHm_v2.0_Chr1g0350621' => 'rch', 'RcHm_v2.0_Chr1g0350641' => 'rch', 'RcHm_v2.0_Chr2g0092891' => 'rch', 'RcHm_v2.0_Chr2g0100251' => 'rch', 'RcHm_v2.0_Chr2g0158661' => 'rch', 'RcHm_v2.0_Chr2g0172741' => 'rch', 'RcHm_v2.0_Chr4g0429571' => 'rch', 'RcHm_v2.0_Chr5g0042471' => 'rch', 'RcHm_v2.0_Chr7g0189451' => 'rch', 'Rhsim08G0052000' => 'rsi', 'Rhsim08G0174400' => 'rsi', 'Rhsim08G0193200' => 'rsi', 'Rhsim10G0214800' => 'rsi', 'Rhsim10G0214900' => 'rsi', 'Rhsim10G0215000' => 'rsi', 'Rhsim12G0022900' => 'rsi', 'Rhsim12G0177500' => 'rsi', 'Rhsim12G0177700' => 'rsi', 'Sabra03G0122600' => 'sbr', 'Sabra05G0097400' => 'sbr', 'Sabra12G0064100' => 'sbr', 'Sabra15G0121300' => 'sbr', 'SalBow2G0642' => 'sbo', 'SalBow5G2667' => 'sbo', 'SalBow5G4873' => 'sbo', 'SalBow8G2395' => 'sbo', 'Sc03g0003290' => 'sci', 'Sc10g0010130' => 'sci', 'Sc22g0003650' => 'sci', 'Sed0001603' => 'sed', 'Sed0004259' => 'sed', 'Sed0006789' => 'sed', 'Sed0011838' => 'sed', 'Sed0012964' => 'sed', 'Sed0016383' => 'sed', 'Sed0019010' => 'sed', 'Sed0020188' => 'sed', 'SEGI_04702' => 'sgi', 'SEGI_17231' => 'sgi', 'SEGI_18877' => 'sgi', 'SEGI_25196' => 'sgi', 'SEGI_25515' => 'sgi', 'SEGI_28445' => 'sgi', 'SEGI_37452' => 'sgi', 'SGA_v2.0_scaffold188G40336' => 'sas', 'SGA_v2.0_scaffold228G43247' => 'sas', 'SGA_v2.0_scaffold280G46853' => 'sas', 'SGA_v2.0_scaffold34G13808' => 'sas', 'SGA_v2.0_scaffold40G15576' => 'sas', 'SGA_v2.0_scaffold611G53188' => 'sas', 'SGA_v2.0_scaffold78G25461' => 'sas', 'SGA_v2.0_scaffold90G27888' => 'sas', 'SHI08601' => 'shi', 'SHI08606' => 'shi', 'SHI17117' => 'shi', 'SHI17119' => 'shi', 'SMO118G0201' => 'smo', 'SMO169G0247' => 'smo', 'SMO176G0006' => 'smo', 'SMO176G0015' => 'smo', 'SMO202G0006' => 'smo', 'SMO240G0050' => 'smo', 'SMO286G0009' => 'smo', 'SMO338G0033' => 'smo', 'SMO356G0533' => 'smo', 'SMO364G0382' => 'smo', 'SMO367G0166' => 'smo', 'SMO367G1098' => 'smo', 'Solyc01g009920.3' => 'sly', 'Solyc01g099300.3' => 'sly', 'Solyc02g084700.3' => 'sly', 'Solyc03g097520.3' => 'sly', 'Solyc06g071580.3' => 'sly', 'Solyc10g081760.3' => 'sly', 'Sopen01g005480' => 'spe', 'Sopen01g042850' => 'spe', 'Sopen02g029370' => 'spe', 'Sopen03g028280' => 'spe', 'Sopen06g027870' => 'spe', 'Sopen10g032270' => 'spe', 'Sp5g18180' => 'spa', 'Sp6g12880' => 'spa', 'Sp6g30850' => 'spa', 'Sp7g22960' => 'spa', 'Sp7g34010' => 'spa', 'SpUn1326_0010' => 'spa', 'TAR371G0242' => 'tar', 'TAR622G0638' => 'tar', 'TAR628G1548' => 'tar', 'TAR629G1079' => 'tar', 'TAR629G3413' => 'tar', 'THA.LOC104804249' => 'tha', 'THA.LOC104808315' => 'tha', 'THA.LOC104809238' => 'tha', 'THA.LOC104825484' => 'tha', 'Thecc.01G025500' => 'tca', 'Thecc.03G015800' => 'tca', 'Thecc.03G018000' => 'tca', 'Thecc.03G134800' => 'tca', 'Thecc.04G014700' => 'tca', 'Thhalv10006991m.g' => 'esa', 'Thhalv10012707m.g' => 'esa', 'Thhalv10015739m.g' => 'esa', 'Thhalv10024553m.g' => 'esa', 'Thhalv10024673m.g' => 'esa', 'Thhalv10029187m.g' => 'esa', 'TPR.G12971' => 'tpr', 'TPR.G29396' => 'tpr', 'TPR.G33376' => 'tpr', 'TPR.G35508' => 'tpr', 'TPR.G35516' => 'tpr', 'TPR.G37317' => 'tpr', 'TPR.G37389' => 'tpr', 'TPR.G37523' => 'tpr', 'TPR.G559' => 'tpr', 'TWI14G0070' => 'twi', 'TWI14G0729' => 'twi', 'TWI18G0596' => 'twi', 'TWI39G0780' => 'twi', 'TWI39G0850' => 'twi', 'TWI73G1052' => 'twi', 'unitig_52.g17485' => 'ugi', 'unitig_61.g26355' => 'ugi', 'vmacro01040' => 'vma', 'vmacro16731' => 'vma', 'vmacro18270' => 'vma', 'vmacro19142' => 'vma', 'vmacro19407' => 'vma', 'vmacro19408' => 'vma', 'vmacro21899' => 'vma', 'vmacro21900' => 'vma', 'vmacro21901' => 'vma', 'VMungo0251G0490' => 'vmu', 'VMungo0251G1748' => 'vmu', 'VMungo1309G0421' => 'vmu', 'Zm00001eb086500' => 'zma', 'Zm00001eb150680' => 'zma', 'Zm00001eb162330' => 'zma', 'Zm00001eb203130' => 'zma', 'Zm00001eb369480' => 'zma', 'Zm00001eb382340' => 'zma', 'Zm00001eb416360' => 'zma' ), 'gf_id' => 'HOM05D000902', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000902' ), 'data_identifier' => 'HOM05D000902', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000902', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '663', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02470' => 'bna', 'A01p16260' => 'bna', 'A02p01680' => 'bna', 'A03p16600' => 'bna', 'A03p55660' => 'bna', 'A03p64160' => 'bna', 'A03p64170' => 'bna', 'A08p31900' => 'bna', 'A09p59530' => 'bna', 'A10p08230' => 'bna', 'A10p25090' => 'bna', 'Aa31LG3G7100' => 'aar', 'Aa31LG3G7110' => 'aar', 'Aa31LG6G13160' => 'aar', 'Aa31LG7G10770' => 'aar', 'Aa31LG7G3830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2723' => 'aag', 'Actinidia08045' => 'ach', 'Actinidia08888' => 'ach', 'Actinidia18333' => 'ach', 'Actinidia19334' => 'ach', 'Actinidia25552' => 'ach', 'Actinidia26089' => 'ach', 'Actinidia30615' => 'ach', 'Actinidia30616' => 'ach', 'Actinidia33083' => 'ach', 'Actinidia35762' => 'ach', 'Ah.02g110620' => 'amhyb', 'Ah.11g046390' => 'amhyb', 'AL1G31670' => 'aly', 'AL6G23730' => 'aly', 'AL7G14740' => 'aly', 'AL7G14750' => 'aly', 'AL7G14760' => 'aly', 'AL7G28220' => 'aly', 'AL8G24940' => 'aly', 'Aqoxy3G01665' => 'aox', 'Aqoxy3G02853' => 'aox', 'Aqoxy5G01513' => 'aox', 'Aqoxy5G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8SKA4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ75LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKDA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0LJZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7REX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZP4YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWX7I5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2QKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS0L9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPCD8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q161UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC7XCF' => 'arhy', 'AT1G19100' => 'ath', 'AT4G24970' => 'ath', 'AT4G36270' => 'ath', 'AT4G36280' => 'ath', 'AT4G36290' => 'ath', 'AT5G13130' => 'ath', 'AT5G50780' => 'ath', 'ATR0582G266' => 'atr', 'ATR0661G195' => 'atr', 'ATR1152G031' => 'atr', 'Atru.chr11.2382' => 'acertr', 'Atru.chr12.2337' => 'acertr', 'Atru.chr3.744' => 'acertr', 'Atru.chr6.1870' => 'acertr', 'Atru.chr9.2515' => 'acertr', 'AUR62004120' => 'cqu', 'AUR62005667' => 'cqu', 'AUR62007634' => 'cqu', 'AUR62008186' => 'cqu', 'AUR62008187' => 'cqu', 'AUR62008188' => 'cqu', 'AUR62027954' => 'cqu', 'AUR62028766' => 'cqu', 'AUR62028767' => 'cqu', 'AUR62028768' => 'cqu', 'AUR62028886' => 'cqu', 'AUR62029563' => 'cqu', 'AUR62038832' => 'cqu', 'BcaB01g04149' => 'bca', 'BcaB03g12940' => 'bca', 'BcaB03g13090' => 'bca', 'BcaB03g14466' => 'bca', 'BcaB05g24035' => 'bca', 'BcaC01g06050' => 'bca', 'BcaC04g19148' => 'bca', 'BcaC04g20761' => 'bca', 'BcaC06g32845' => 'bca', 'BcaC07g41274' => 'bca', 'BcaC09g50827' => 'bca', 'BcaNung00741' => 'bca', 'BcaNung00742' => 'bca', 'BcaNung01859' => 'bca', 'BcaNung03985' => 'bca', 'BcaNung03989' => 'bca', 'BcaNung05661' => 'bca', 'BolC1t00257H' => 'bol', 'BolC1t01956H' => 'bol', 'BolC2t06534H' => 'bol', 'BolC3t14334H' => 'bol', 'BolC5t30451H' => 'bol', 'BolC7t45880H' => 'bol', 'BolC7t46586H' => 'bol', 'BolC8t49301H' => 'bol', 'BolC8t51837H' => 'bol', 'BolC9t56822H' => 'bol', 'BolC9t59235H' => 'bol', 'BraA01t00234Z' => 'bra', 'BraA01t01563Z' => 'bra', 'BraA02t05147Z' => 'bra', 'BraA03t10947Z' => 'bra', 'BraA03t14633Z' => 'bra', 'BraA08t35112Z' => 'bra', 'BraA09t41330Z' => 'bra', 'BraA10t44570Z' => 'bra', 'C01p02670' => 'bna', 'C01p20260' => 'bna', 'C02p05890' => 'bna', 'C03p19530' => 'bna', 'C05p17470' => 'bna', 'C07p53900' => 'bna', 'C07p61630' => 'bna', 'C08p16800' => 'bna', 'C08p42810' => 'bna', 'C09p39480' => 'bna', 'C09p63980' => 'bna', 'CAN.G1001.7' => 'can', 'CAN.G1034.55' => 'can', 'CAN.G143.7' => 'can', 'CAN.G3340.1' => 'can', 'CAN.G358.19' => 'can', 'CAN.G373.2' => 'can', 'CAN.G674.16' => 'can', 'CAN.G674.17' => 'can', 'CAN.G674.18' => 'can', 'CAN.G732.2' => 'can', 'CAN.G732.3' => 'can', 'CAN.G993.39' => 'can', 'CANSAT01G2052' => 'cansat', 'CANSAT80G0070' => 'cansat', 'CANSAT80G0483' => 'cansat', 'CANSAT80G0625' => 'cansat', 'CARHR019690' => 'chi', 'CARHR080280' => 'chi', 'CARHR152750' => 'chi', 'CARHR152760' => 'chi', 'CARHR152770' => 'chi', 'CARHR200340' => 'chi', 'CARHR232370' => 'chi', 'CARHR244670' => 'chi', 'CARHR244680' => 'chi', 'CARHR257520' => 'chi', 'Carub.0001s1872' => 'cru', 'Carub.0006s1130' => 'cru', 'Carub.0007s0396' => 'cru', 'Carub.0007s0397' => 'cru', 'Carub.0007s1608' => 'cru', 'Carub.0008s1068' => 'cru', 'Carub.0008s1077' => 'cru', 'Ca_16158_v3' => 'car', 'Ca_17571_v3' => 'car', 'Ca_21936_v3' => 'car', 'Ca_22350_v3' => 'car', 'CBR_g22445' => 'cbr', 'CBR_g26290' => 'cbr', 'Cc04_g09610' => 'ccan', 'Cc04_g12280' => 'ccan', 'Cc07_g10230' => 'ccan', 'CDE02G0093' => 'cde', 'CDE02G0701' => 'cde', 'CDE04G1050' => 'cde', 'CDE05G1833' => 'cde', 'CDE05G3058' => 'cde', 'CDE05G3380' => 'cde', 'CDE06G0536' => 'cde', 'Cfa006923' => 'cfa', 'Cfa009402' => 'cfa', 'Cfa018751' => 'cfa', 'Cfa019164' => 'cfa', 'Cfa022935' => 'cfa', 'Ciclev10019081m.g' => 'ccl', 'Ciclev10025076m.g' => 'ccl', 'Ciclev10030712m.g' => 'ccl', 'Ciclev10033760m.g' => 'ccl', 'CiPaw.05G105600' => 'cil', 'CiPaw.08G136700' => 'cil', 'CiPaw.11G003900' => 'cil', 'CiPaw.11G023700' => 'cil', 'CiPaw.12G003700' => 'cil', 'ClCG06G017100' => 'cla', 'ClCG06G018110' => 'cla', 'ClCG07G008800' => 'cla', 'ClCG07G015330' => 'cla', 'COL.COLO4_13698' => 'col', 'COL.COLO4_16659' => 'col', 'COL.COLO4_21986' => 'col', 'COL.COLO4_24049' => 'col', 'COL.COLO4_29061' => 'col', 'COL.COLO4_29075' => 'col', 'COL.COLO4_30094' => 'col', 'Cpa.g.c33689' => 'cpa', 'Cpa.g.sc108.39' => 'cpa', 'Cpa.g.sc108.41' => 'cpa', 'Cpa.g.sc1163.1' => 'cpa', 'Cpa.g.sc4.155' => 'cpa', 'Cpa.g.sc6.194' => 'cpa', 'CsaV3_1G000340' => 'csa', 'CsaV3_1G001400' => 'csa', 'CsaV3_4G002220' => 'csa', 'CsaV3_4G005370' => 'csa', 'CSS0007487' => 'camsi', 'CSS0008066' => 'camsi', 'CSS0009120' => 'camsi', 'CSS0015512' => 'camsi', 'CSS0022409' => 'camsi', 'CSS0025358' => 'camsi', 'CSS0044547' => 'camsi', 'DCAR_013057' => 'dca', 'DCAR_015058' => 'dca', 'DCAR_016027' => 'dca', 'DCAR_017327' => 'dca', 'DCAR_020743' => 'dca', 'DCAR_026157' => 'dca', 'DCAR_032339' => 'dca', 'DCAR_032340' => 'dca', 'Dinv11200' => 'din', 'Dinv11201' => 'din', 'Dinv20631' => 'din', 'Dinv23182' => 'din', 'Dinv33466' => 'din', 'Dinv33583' => 'din', 'Dinv38565' => 'din', 'Duzib068G0200' => 'dzi', 'Duzib147G0132' => 'dzi', 'Duzib147G0635' => 'dzi', 'Duzib205G1670' => 'dzi', 'Duzib251G0606' => 'dzi', 'ECA232G3336' => 'eca', 'ECA232G3763' => 'eca', 'ECA232G4845' => 'eca', 'ECA234G1607' => 'eca', 'ECA246G0932' => 'eca', 'ECA247G0781' => 'eca', 'ECA247G1932' => 'eca', 'ECA247G2079' => 'eca', 'ECA247G3338' => 'eca', 'ECA247G4115' => 'eca', 'EL10Ac3g06552' => 'bvu', 'EL10Ac5g10721' => 'bvu', 'EL10Ac5g10722' => 'bvu', 'EL10Ac5g10723' => 'bvu', 'EL10Ac5g11361' => 'bvu', 'EL10Ac6g13553' => 'bvu', 'EL10As8g23872' => 'bvu', 'Eucgr.B00250' => 'egr', 'Eucgr.B00251' => 'egr', 'Eucgr.B03533' => 'egr', 'Eucgr.I02381' => 'egr', 'Eucgr.K02700' => 'egr', 'FAN02G0174' => 'fan', 'FAN02G3146' => 'fan', 'FAN04G1672' => 'fan', 'FAN04G2273' => 'fan', 'FAN05G2791' => 'fan', 'FAN05G4035' => 'fan', 'FAN07G0834' => 'fan', 'FAN08G1198' => 'fan', 'FAN09G4182' => 'fan', 'FAN12G0496' => 'fan', 'FAN13G1027' => 'fan', 'FAN13G2951' => 'fan', 'FAN14G0705' => 'fan', 'FAN14G0720' => 'fan', 'FAN17G0201' => 'fan', 'FAN17G2665' => 'fan', 'FAN18G1456' => 'fan', 'FAN18G1525' => 'fan', 'FAN18G3500' => 'fan', 'FAN28G2670' => 'fan', 'FvH4_1g12391' => 'fve', 'FvH4_4g23220' => 'fve', 'FvH4_5g08810' => 'fve', 'FvH4_5g28960' => 'fve', 'FvH4_6g42820' => 'fve', 'FvH4_6g51110' => 'fve', 'Glyma.02G051802' => 'gma', 'Glyma.04G185300' => 'gma', 'Glyma.05G202900' => 'gma', 'Glyma.08G010300' => 'gma', 'Glyma.16G131900' => 'gma', 'Glyma.17G087900' => 'gma', 'Gohir.A07G048600' => 'ghi', 'Gohir.A11G179000' => 'ghi', 'Gohir.A12G140900' => 'ghi', 'Gohir.A12G140950' => 'ghi', 'Gohir.A12G191700' => 'ghi', 'Gohir.A13G086300' => 'ghi', 'Gohir.D07G052900' => 'ghi', 'Gohir.D11G186600' => 'ghi', 'Gohir.D12G145575' => 'ghi', 'Gohir.D12G145650' => 'ghi', 'Gohir.D12G145725' => 'ghi', 'Gohir.D12G194050' => 'ghi', 'Gohir.D13G091800' => 'ghi', 'Gorai.001G055900' => 'gra', 'Gorai.007G198400' => 'gra', 'Gorai.008G157000' => 'gra', 'Gorai.008G157100' => 'gra', 'Gorai.008G208700' => 'gra', 'Gorai.010G138700' => 'gra', 'GSVIVG01000977001' => 'vvi', 'GSVIVG01007708001' => 'vvi', 'GSVIVG01008587001' => 'vvi', 'GSVIVG01018849001' => 'vvi', 'GSVIVG01032432001' => 'vvi', 'HanXRQChr02g0034131' => 'han', 'HanXRQChr02g0035981' => 'han', 'HanXRQChr02g0035991' => 'han', 'HanXRQChr05g0155611' => 'han', 'HanXRQChr05g0155621' => 'han', 'HanXRQChr08g0236501' => 'han', 'HanXRQChr09g0261321' => 'han', 'HanXRQChr09g0272081' => 'han', 'HanXRQChr10g0310741' => 'han', 'HanXRQChr11g0325591' => 'han', 'HanXRQChr12g0385691' => 'han', 'HanXRQChr13g0387801' => 'han', 'HanXRQChr15g0463011' => 'han', 'Haze_03826' => 'cav', 'Haze_03827' => 'cav', 'Haze_07183' => 'cav', 'Haze_07537' => 'cav', 'Haze_07539' => 'cav', 'Haze_12461' => 'cav', 'Haze_16115' => 'cav', 'Haze_16808' => 'cav', 'Haze_18531' => 'cav', 'Hma1.2p1_0046F.1_g026700' => 'hma', 'Hma1.2p1_0046F.1_g026710' => 'hma', 'Hma1.2p1_0168F.1_g074340' => 'hma', 'Hma1.2p1_0266F.1_g107030' => 'hma', 'Hma1.2p1_0266F.1_g107060' => 'hma', 'Hma1.2p1_0275F.1_g110510' => 'hma', 'Hma1.2p1_0592F.1_g185490' => 'hma', 'Hma1.2p1_0592F.1_g185500' => 'hma', 'Hma1.2p1_0592F.1_g185510' => 'hma', 'Hma1.2p1_0592F.1_g185520' => 'hma', 'Hma1.2p1_0592F.1_g185530' => 'hma', 'Hma1.2p1_0818F.1_g223450' => 'hma', 'HPP92_009708' => 'vpl', 'HPP92_009793' => 'vpl', 'HPP92_009796' => 'vpl', 'HPP92_009797' => 'vpl', 'HPP92_014940' => 'vpl', 'HPP92_014988' => 'vpl', 'Hund02463' => 'sun', 'Hund02760' => 'sun', 'Hund05071' => 'sun', 'Hund10108' => 'sun', 'Hund11204' => 'sun', 'Hund14016' => 'sun', 'Hund16464' => 'sun', 'Lalb_Chr09g0333391' => 'lal', 'Lalb_Chr11g0070461' => 'lal', 'Lalb_Chr12g0201671' => 'lal', 'Lalb_Chr13g0297161' => 'lal', 'Lj1g0002823' => 'lja', 'Lj3C1074T6' => 'lonja', 'Lj4A212T28' => 'lonja', 'Lj4g0005516' => 'lja', 'Lj4g0013705' => 'lja', 'Lj4g0027865' => 'lja', 'Lj5C92G16' => 'lonja', 'Lj5C92T12' => 'lonja', 'Lj7C596T3' => 'lonja', 'Lj9A446G59' => 'lonja', 'Lj9A482G21' => 'lonja', 'Lsat_1_v5_gn_1_28261' => 'lsa', 'Lsat_1_v5_gn_1_28281' => 'lsa', 'Lsat_1_v5_gn_1_32721' => 'lsa', 'Lsat_1_v5_gn_4_151760' => 'lsa', 'Lsat_1_v5_gn_4_2120' => 'lsa', 'Lsat_1_v5_gn_4_75761' => 'lsa', 'Lsat_1_v5_gn_5_10920' => 'lsa', 'Manes.02G099900' => 'mes', 'Manes.11G096200' => 'mes', 'Manes.12G007200' => 'mes', 'Manes.14G048300' => 'mes', 'Manes.17G114700' => 'mes', 'Mapoly0002s0070' => 'mpo', 'Mapoly0029s0099' => 'mpo', 'MBI07_g24742_MAGBIO' => 'mbi', 'MBI10_g27988_MAGBIO' => 'mbi', 'MBI11_g13057_MAGBIO' => 'mbi', 'MD02G1137200' => 'mdo', 'MD06G1137200' => 'mdo', 'MD07G1122300' => 'mdo', 'MD09G1078200' => 'mdo', 'MD13G1123700' => 'mdo', 'MD14G1151900' => 'mdo', 'MD17G1030900' => 'mdo', 'MD17G1068200' => 'mdo', 'MD17G1068600' => 'mdo', 'Medtr3g077540' => 'mtr', 'Medtr4g105530' => 'mtr', 'Medtr8g076580' => 'mtr', 'Medtr8g076590' => 'mtr', 'Medtr8g096410' => 'mtr', 'MELO3C016411.2' => 'cme', 'MELO3C017780.2' => 'cme', 'MELO3C022560.2' => 'cme', 'MELO3C026187.2' => 'cme', 'MELO3C026286.2' => 'cme', 'MELO3C032854.2' => 'cme', 'Migut.H02495' => 'egut', 'Migut.I00561' => 'egut', 'Migut.K01015' => 'egut', 'Migut.K01016' => 'egut', 'Migut.L00743' => 'egut', 'Migut.L00744' => 'egut', 'Migut.L00746' => 'egut', 'Migut.L00798' => 'egut', 'Migut.L00799' => 'egut', 'Migut.N02096' => 'egut', 'MSTRG.11259' => 'ama', 'MSTRG.23142' => 'ama', 'MSTRG.2499' => 'ama', 'Nitab4.5_0000003g0730' => 'nta', 'Nitab4.5_0000137g0020' => 'nta', 'Nitab4.5_0000721g0210' => 'nta', 'Nitab4.5_0000723g0050' => 'nta', 'Nitab4.5_0000913g0070' => 'nta', 'Nitab4.5_0001332g0040' => 'nta', 'Nitab4.5_0001771g0050' => 'nta', 'Nitab4.5_0001918g0050' => 'nta', 'Nitab4.5_0002686g0030' => 'nta', 'Nitab4.5_0003156g0020' => 'nta', 'Nitab4.5_0003383g0040' => 'nta', 'Nitab4.5_0003918g0010' => 'nta', 'Nitab4.5_0006760g0010' => 'nta', 'Nn1g05981' => 'nnu', 'Nn1g06288' => 'nnu', 'Nn3g16371' => 'nnu', 'Nn3g16786' => 'nnu', 'Nn4g22232' => 'nnu', 'Oeu005144.1' => 'oeu', 'Oeu005145.1' => 'oeu', 'Oeu011348.1' => 'oeu', 'Oeu016415.1' => 'oeu', 'Oeu023501.1' => 'oeu', 'Oeu044473.1' => 'oeu', 'Oeu048892.2' => 'oeu', 'Os01g0549200' => 'osa', 'Os02g0469300' => 'osa', 'Os04g0311100' => 'osa', 'Os06g0474900' => 'osa', 'Os10g0181700' => 'osa', 'Os11g0454800' => 'osa', 'Peaxi162Scf00037g00714' => 'pax', 'Peaxi162Scf00084g01217' => 'pax', 'Peaxi162Scf00257g00217' => 'pax', 'Peaxi162Scf00516g00215' => 'pax', 'Peaxi162Scf00689g00123' => 'pax', 'PGR044G2719' => 'pgr', 'PGR083G1360' => 'pgr', 'PGR102G2849' => 'pgr', 'PGR119G2534' => 'pgr', 'PGSC0003DMG400003538' => 'stu', 'PGSC0003DMG400028138' => 'stu', 'PGSC0003DMG400031732' => 'stu', 'PGSC0003DMG400038165' => 'stu', 'Phvul.002G284600' => 'pvu', 'Phvul.003G258200' => 'pvu', 'Phvul.009G176500' => 'pvu', 'Potri.003G167201' => 'ptr', 'Potri.005G118400' => 'ptr', 'Potri.012G089000' => 'ptr', 'Potri.012G102800' => 'ptr', 'Potri.015G079400' => 'ptr', 'Potri.015G100900' => 'ptr', 'Pp3c14_9810' => 'ppa', 'Pp3c15_10450' => 'ppa', 'Pp3c20_19150' => 'ppa', 'Pp3c23_12740' => 'ppa', 'Pp3c23_6310' => 'ppa', 'Pp3c24_3720' => 'ppa', 'Pp3c27_2580' => 'ppa', 'Pp3c9_8990' => 'ppa', 'PRCOL_00002854' => 'pco', 'Prupe.1G221200' => 'ppe', 'Prupe.3G289000' => 'ppe', 'Prupe.5G147000' => 'ppe', 'Prupe.6G157300' => 'ppe', 'Prupe.7G163400' => 'ppe', 'Psat0s2177g0040' => 'psa', 'Psat3g174760' => 'psa', 'Psat3g192160' => 'psa', 'Psat4g058520' => 'psa', 'Psat4g096840' => 'psa', 'Psat7g037320' => 'psa', 'PSO017G1274' => 'pso', 'PSO017G5166' => 'pso', 'PSO063G4558' => 'pso', 'PSO170G4458' => 'pso', 'PSO170G5005' => 'pso', 'PSO210G6156' => 'pso', 'PSO210G6635' => 'pso', 'PSO210G7397' => 'pso', 'PSO210G7700' => 'pso', 'PSO455G0035' => 'pso', 'PSO455G0180' => 'pso', 'PSO478G4515' => 'pso', 'PSO832G1305' => 'pso', 'PSO832G3489' => 'pso', 'QL02p075247' => 'qlo', 'QL03p051148' => 'qlo', 'QL05p010313' => 'qlo', 'QL06p034627' => 'qlo', 'QL10p001889' => 'qlo', 'QL10p010846' => 'qlo', 'RcHm_v2.0_Chr1g0350621' => 'rch', 'RcHm_v2.0_Chr1g0350641' => 'rch', 'RcHm_v2.0_Chr2g0092891' => 'rch', 'RcHm_v2.0_Chr2g0100251' => 'rch', 'RcHm_v2.0_Chr2g0158661' => 'rch', 'RcHm_v2.0_Chr2g0172741' => 'rch', 'RcHm_v2.0_Chr4g0429571' => 'rch', 'RcHm_v2.0_Chr5g0042471' => 'rch', 'RcHm_v2.0_Chr7g0189451' => 'rch', 'Rhsim08G0052000' => 'rsi', 'Rhsim08G0174400' => 'rsi', 'Rhsim08G0193200' => 'rsi', 'Rhsim10G0214800' => 'rsi', 'Rhsim10G0214900' => 'rsi', 'Rhsim10G0215000' => 'rsi', 'Rhsim12G0022900' => 'rsi', 'Rhsim12G0177500' => 'rsi', 'Rhsim12G0177700' => 'rsi', 'Sabra03G0122600' => 'sbr', 'Sabra05G0097400' => 'sbr', 'Sabra12G0064100' => 'sbr', 'Sabra15G0121300' => 'sbr', 'SalBow2G0642' => 'sbo', 'SalBow5G2667' => 'sbo', 'SalBow5G4873' => 'sbo', 'SalBow8G2395' => 'sbo', 'Sc03g0003290' => 'sci', 'Sc10g0010130' => 'sci', 'Sc22g0003650' => 'sci', 'Sed0001603' => 'sed', 'Sed0004259' => 'sed', 'Sed0006789' => 'sed', 'Sed0011838' => 'sed', 'Sed0012964' => 'sed', 'Sed0016383' => 'sed', 'Sed0019010' => 'sed', 'Sed0020188' => 'sed', 'SEGI_04702' => 'sgi', 'SEGI_17231' => 'sgi', 'SEGI_18877' => 'sgi', 'SEGI_25196' => 'sgi', 'SEGI_25515' => 'sgi', 'SEGI_28445' => 'sgi', 'SEGI_37452' => 'sgi', 'SGA_v2.0_scaffold188G40336' => 'sas', 'SGA_v2.0_scaffold228G43247' => 'sas', 'SGA_v2.0_scaffold280G46853' => 'sas', 'SGA_v2.0_scaffold34G13808' => 'sas', 'SGA_v2.0_scaffold40G15576' => 'sas', 'SGA_v2.0_scaffold611G53188' => 'sas', 'SGA_v2.0_scaffold78G25461' => 'sas', 'SGA_v2.0_scaffold90G27888' => 'sas', 'SHI08601' => 'shi', 'SHI08606' => 'shi', 'SHI17117' => 'shi', 'SHI17119' => 'shi', 'SMO118G0201' => 'smo', 'SMO169G0247' => 'smo', 'SMO176G0006' => 'smo', 'SMO176G0015' => 'smo', 'SMO202G0006' => 'smo', 'SMO240G0050' => 'smo', 'SMO286G0009' => 'smo', 'SMO338G0033' => 'smo', 'SMO356G0533' => 'smo', 'SMO364G0382' => 'smo', 'SMO367G0166' => 'smo', 'SMO367G1098' => 'smo', 'Solyc01g009920.3' => 'sly', 'Solyc01g099300.3' => 'sly', 'Solyc02g084700.3' => 'sly', 'Solyc03g097520.3' => 'sly', 'Solyc06g071580.3' => 'sly', 'Solyc10g081760.3' => 'sly', 'Sopen01g005480' => 'spe', 'Sopen01g042850' => 'spe', 'Sopen02g029370' => 'spe', 'Sopen03g028280' => 'spe', 'Sopen06g027870' => 'spe', 'Sopen10g032270' => 'spe', 'Sp5g18180' => 'spa', 'Sp6g12880' => 'spa', 'Sp6g30850' => 'spa', 'Sp7g22960' => 'spa', 'Sp7g34010' => 'spa', 'SpUn1326_0010' => 'spa', 'TAR371G0242' => 'tar', 'TAR622G0638' => 'tar', 'TAR628G1548' => 'tar', 'TAR629G1079' => 'tar', 'TAR629G3413' => 'tar', 'THA.LOC104804249' => 'tha', 'THA.LOC104808315' => 'tha', 'THA.LOC104809238' => 'tha', 'THA.LOC104825484' => 'tha', 'Thecc.01G025500' => 'tca', 'Thecc.03G015800' => 'tca', 'Thecc.03G018000' => 'tca', 'Thecc.03G134800' => 'tca', 'Thecc.04G014700' => 'tca', 'Thhalv10006991m.g' => 'esa', 'Thhalv10012707m.g' => 'esa', 'Thhalv10015739m.g' => 'esa', 'Thhalv10024553m.g' => 'esa', 'Thhalv10024673m.g' => 'esa', 'Thhalv10029187m.g' => 'esa', 'TPR.G12971' => 'tpr', 'TPR.G29396' => 'tpr', 'TPR.G33376' => 'tpr', 'TPR.G35508' => 'tpr', 'TPR.G35516' => 'tpr', 'TPR.G37317' => 'tpr', 'TPR.G37389' => 'tpr', 'TPR.G37523' => 'tpr', 'TPR.G559' => 'tpr', 'TWI14G0070' => 'twi', 'TWI14G0729' => 'twi', 'TWI18G0596' => 'twi', 'TWI39G0780' => 'twi', 'TWI39G0850' => 'twi', 'TWI73G1052' => 'twi', 'unitig_52.g17485' => 'ugi', 'unitig_61.g26355' => 'ugi', 'vmacro01040' => 'vma', 'vmacro16731' => 'vma', 'vmacro18270' => 'vma', 'vmacro19142' => 'vma', 'vmacro19407' => 'vma', 'vmacro19408' => 'vma', 'vmacro21899' => 'vma', 'vmacro21900' => 'vma', 'vmacro21901' => 'vma', 'VMungo0251G0490' => 'vmu', 'VMungo0251G1748' => 'vmu', 'VMungo1309G0421' => 'vmu', 'Zm00001eb086500' => 'zma', 'Zm00001eb150680' => 'zma', 'Zm00001eb162330' => 'zma', 'Zm00001eb203130' => 'zma', 'Zm00001eb369480' => 'zma', 'Zm00001eb382340' => 'zma', 'Zm00001eb416360' => 'zma' ) $gf_id = 'HOM05D000902' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000902' ) $data_identifier = 'HOM05D000902' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 13, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 10, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 6, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 9, 'hma' => (int) 12, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 4, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 6, 'ppa' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 6, 'rch' => (int) 9, 'rsi' => (int) 9, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 12, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 3, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416360' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000902', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '663', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02470' => 'bna', 'A01p16260' => 'bna', 'A02p01680' => 'bna', 'A03p16600' => 'bna', 'A03p55660' => 'bna', 'A03p64160' => 'bna', 'A03p64170' => 'bna', 'A08p31900' => 'bna', 'A09p59530' => 'bna', 'A10p08230' => 'bna', 'A10p25090' => 'bna', 'Aa31LG3G7100' => 'aar', 'Aa31LG3G7110' => 'aar', 'Aa31LG6G13160' => 'aar', 'Aa31LG7G10770' => 'aar', 'Aa31LG7G3830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2723' => 'aag', 'Actinidia08045' => 'ach', 'Actinidia08888' => 'ach', 'Actinidia18333' => 'ach', 'Actinidia19334' => 'ach', 'Actinidia25552' => 'ach', 'Actinidia26089' => 'ach', 'Actinidia30615' => 'ach', 'Actinidia30616' => 'ach', 'Actinidia33083' => 'ach', 'Actinidia35762' => 'ach', 'Ah.02g110620' => 'amhyb', 'Ah.11g046390' => 'amhyb', 'AL1G31670' => 'aly', 'AL6G23730' => 'aly', 'AL7G14740' => 'aly', 'AL7G14750' => 'aly', 'AL7G14760' => 'aly', 'AL7G28220' => 'aly', 'AL8G24940' => 'aly', 'Aqoxy3G01665' => 'aox', 'Aqoxy3G02853' => 'aox', 'Aqoxy5G01513' => 'aox', 'Aqoxy5G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8SKA4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ75LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKDA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0LJZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7REX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZP4YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWX7I5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2QKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS0L9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPCD8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q161UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC7XCF' => 'arhy', 'AT1G19100' => 'ath', 'AT4G24970' => 'ath', 'AT4G36270' => 'ath', 'AT4G36280' => 'ath', 'AT4G36290' => 'ath', 'AT5G13130' => 'ath', 'AT5G50780' => 'ath', 'ATR0582G266' => 'atr', 'ATR0661G195' => 'atr', 'ATR1152G031' => 'atr', 'Atru.chr11.2382' => 'acertr', 'Atru.chr12.2337' => 'acertr', 'Atru.chr3.744' => 'acertr', 'Atru.chr6.1870' => 'acertr', 'Atru.chr9.2515' => 'acertr', 'AUR62004120' => 'cqu', 'AUR62005667' => 'cqu', 'AUR62007634' => 'cqu', 'AUR62008186' => 'cqu', 'AUR62008187' => 'cqu', 'AUR62008188' => 'cqu', 'AUR62027954' => 'cqu', 'AUR62028766' => 'cqu', 'AUR62028767' => 'cqu', 'AUR62028768' => 'cqu', 'AUR62028886' => 'cqu', 'AUR62029563' => 'cqu', 'AUR62038832' => 'cqu', 'BcaB01g04149' => 'bca', 'BcaB03g12940' => 'bca', 'BcaB03g13090' => 'bca', 'BcaB03g14466' => 'bca', 'BcaB05g24035' => 'bca', 'BcaC01g06050' => 'bca', 'BcaC04g19148' => 'bca', 'BcaC04g20761' => 'bca', 'BcaC06g32845' => 'bca', 'BcaC07g41274' => 'bca', 'BcaC09g50827' => 'bca', 'BcaNung00741' => 'bca', 'BcaNung00742' => 'bca', 'BcaNung01859' => 'bca', 'BcaNung03985' => 'bca', 'BcaNung03989' => 'bca', 'BcaNung05661' => 'bca', 'BolC1t00257H' => 'bol', 'BolC1t01956H' => 'bol', 'BolC2t06534H' => 'bol', 'BolC3t14334H' => 'bol', 'BolC5t30451H' => 'bol', 'BolC7t45880H' => 'bol', 'BolC7t46586H' => 'bol', 'BolC8t49301H' => 'bol', 'BolC8t51837H' => 'bol', 'BolC9t56822H' => 'bol', 'BolC9t59235H' => 'bol', 'BraA01t00234Z' => 'bra', 'BraA01t01563Z' => 'bra', 'BraA02t05147Z' => 'bra', 'BraA03t10947Z' => 'bra', 'BraA03t14633Z' => 'bra', 'BraA08t35112Z' => 'bra', 'BraA09t41330Z' => 'bra', 'BraA10t44570Z' => 'bra', 'C01p02670' => 'bna', 'C01p20260' => 'bna', 'C02p05890' => 'bna', 'C03p19530' => 'bna', 'C05p17470' => 'bna', 'C07p53900' => 'bna', 'C07p61630' => 'bna', 'C08p16800' => 'bna', 'C08p42810' => 'bna', 'C09p39480' => 'bna', 'C09p63980' => 'bna', 'CAN.G1001.7' => 'can', 'CAN.G1034.55' => 'can', 'CAN.G143.7' => 'can', 'CAN.G3340.1' => 'can', 'CAN.G358.19' => 'can', 'CAN.G373.2' => 'can', 'CAN.G674.16' => 'can', 'CAN.G674.17' => 'can', 'CAN.G674.18' => 'can', 'CAN.G732.2' => 'can', 'CAN.G732.3' => 'can', 'CAN.G993.39' => 'can', 'CANSAT01G2052' => 'cansat', 'CANSAT80G0070' => 'cansat', 'CANSAT80G0483' => 'cansat', 'CANSAT80G0625' => 'cansat', 'CARHR019690' => 'chi', 'CARHR080280' => 'chi', 'CARHR152750' => 'chi', 'CARHR152760' => 'chi', 'CARHR152770' => 'chi', 'CARHR200340' => 'chi', 'CARHR232370' => 'chi', 'CARHR244670' => 'chi', 'CARHR244680' => 'chi', 'CARHR257520' => 'chi', 'Carub.0001s1872' => 'cru', 'Carub.0006s1130' => 'cru', 'Carub.0007s0396' => 'cru', 'Carub.0007s0397' => 'cru', 'Carub.0007s1608' => 'cru', 'Carub.0008s1068' => 'cru', 'Carub.0008s1077' => 'cru', 'Ca_16158_v3' => 'car', 'Ca_17571_v3' => 'car', 'Ca_21936_v3' => 'car', 'Ca_22350_v3' => 'car', 'CBR_g22445' => 'cbr', 'CBR_g26290' => 'cbr', 'Cc04_g09610' => 'ccan', 'Cc04_g12280' => 'ccan', 'Cc07_g10230' => 'ccan', 'CDE02G0093' => 'cde', 'CDE02G0701' => 'cde', 'CDE04G1050' => 'cde', 'CDE05G1833' => 'cde', 'CDE05G3058' => 'cde', 'CDE05G3380' => 'cde', 'CDE06G0536' => 'cde', 'Cfa006923' => 'cfa', 'Cfa009402' => 'cfa', 'Cfa018751' => 'cfa', 'Cfa019164' => 'cfa', 'Cfa022935' => 'cfa', 'Ciclev10019081m.g' => 'ccl', 'Ciclev10025076m.g' => 'ccl', 'Ciclev10030712m.g' => 'ccl', 'Ciclev10033760m.g' => 'ccl', 'CiPaw.05G105600' => 'cil', 'CiPaw.08G136700' => 'cil', 'CiPaw.11G003900' => 'cil', 'CiPaw.11G023700' => 'cil', 'CiPaw.12G003700' => 'cil', 'ClCG06G017100' => 'cla', 'ClCG06G018110' => 'cla', 'ClCG07G008800' => 'cla', 'ClCG07G015330' => 'cla', 'COL.COLO4_13698' => 'col', 'COL.COLO4_16659' => 'col', 'COL.COLO4_21986' => 'col', 'COL.COLO4_24049' => 'col', 'COL.COLO4_29061' => 'col', 'COL.COLO4_29075' => 'col', 'COL.COLO4_30094' => 'col', 'Cpa.g.c33689' => 'cpa', 'Cpa.g.sc108.39' => 'cpa', 'Cpa.g.sc108.41' => 'cpa', 'Cpa.g.sc1163.1' => 'cpa', 'Cpa.g.sc4.155' => 'cpa', 'Cpa.g.sc6.194' => 'cpa', 'CsaV3_1G000340' => 'csa', 'CsaV3_1G001400' => 'csa', 'CsaV3_4G002220' => 'csa', 'CsaV3_4G005370' => 'csa', 'CSS0007487' => 'camsi', 'CSS0008066' => 'camsi', 'CSS0009120' => 'camsi', 'CSS0015512' => 'camsi', 'CSS0022409' => 'camsi', 'CSS0025358' => 'camsi', 'CSS0044547' => 'camsi', 'DCAR_013057' => 'dca', 'DCAR_015058' => 'dca', 'DCAR_016027' => 'dca', 'DCAR_017327' => 'dca', 'DCAR_020743' => 'dca', 'DCAR_026157' => 'dca', 'DCAR_032339' => 'dca', 'DCAR_032340' => 'dca', 'Dinv11200' => 'din', 'Dinv11201' => 'din', 'Dinv20631' => 'din', 'Dinv23182' => 'din', 'Dinv33466' => 'din', 'Dinv33583' => 'din', 'Dinv38565' => 'din', 'Duzib068G0200' => 'dzi', 'Duzib147G0132' => 'dzi', 'Duzib147G0635' => 'dzi', 'Duzib205G1670' => 'dzi', 'Duzib251G0606' => 'dzi', 'ECA232G3336' => 'eca', 'ECA232G3763' => 'eca', 'ECA232G4845' => 'eca', 'ECA234G1607' => 'eca', 'ECA246G0932' => 'eca', 'ECA247G0781' => 'eca', 'ECA247G1932' => 'eca', 'ECA247G2079' => 'eca', 'ECA247G3338' => 'eca', 'ECA247G4115' => 'eca', 'EL10Ac3g06552' => 'bvu', 'EL10Ac5g10721' => 'bvu', 'EL10Ac5g10722' => 'bvu', 'EL10Ac5g10723' => 'bvu', 'EL10Ac5g11361' => 'bvu', 'EL10Ac6g13553' => 'bvu', 'EL10As8g23872' => 'bvu', 'Eucgr.B00250' => 'egr', 'Eucgr.B00251' => 'egr', 'Eucgr.B03533' => 'egr', 'Eucgr.I02381' => 'egr', 'Eucgr.K02700' => 'egr', 'FAN02G0174' => 'fan', 'FAN02G3146' => 'fan', 'FAN04G1672' => 'fan', 'FAN04G2273' => 'fan', 'FAN05G2791' => 'fan', 'FAN05G4035' => 'fan', 'FAN07G0834' => 'fan', 'FAN08G1198' => 'fan', 'FAN09G4182' => 'fan', 'FAN12G0496' => 'fan', 'FAN13G1027' => 'fan', 'FAN13G2951' => 'fan', 'FAN14G0705' => 'fan', 'FAN14G0720' => 'fan', 'FAN17G0201' => 'fan', 'FAN17G2665' => 'fan', 'FAN18G1456' => 'fan', 'FAN18G1525' => 'fan', 'FAN18G3500' => 'fan', 'FAN28G2670' => 'fan', 'FvH4_1g12391' => 'fve', 'FvH4_4g23220' => 'fve', 'FvH4_5g08810' => 'fve', 'FvH4_5g28960' => 'fve', 'FvH4_6g42820' => 'fve', 'FvH4_6g51110' => 'fve', 'Glyma.02G051802' => 'gma', 'Glyma.04G185300' => 'gma', 'Glyma.05G202900' => 'gma', 'Glyma.08G010300' => 'gma', 'Glyma.16G131900' => 'gma', 'Glyma.17G087900' => 'gma', 'Gohir.A07G048600' => 'ghi', 'Gohir.A11G179000' => 'ghi', 'Gohir.A12G140900' => 'ghi', 'Gohir.A12G140950' => 'ghi', 'Gohir.A12G191700' => 'ghi', 'Gohir.A13G086300' => 'ghi', 'Gohir.D07G052900' => 'ghi', 'Gohir.D11G186600' => 'ghi', 'Gohir.D12G145575' => 'ghi', 'Gohir.D12G145650' => 'ghi', 'Gohir.D12G145725' => 'ghi', 'Gohir.D12G194050' => 'ghi', 'Gohir.D13G091800' => 'ghi', 'Gorai.001G055900' => 'gra', 'Gorai.007G198400' => 'gra', 'Gorai.008G157000' => 'gra', 'Gorai.008G157100' => 'gra', 'Gorai.008G208700' => 'gra', 'Gorai.010G138700' => 'gra', 'GSVIVG01000977001' => 'vvi', 'GSVIVG01007708001' => 'vvi', 'GSVIVG01008587001' => 'vvi', 'GSVIVG01018849001' => 'vvi', 'GSVIVG01032432001' => 'vvi', 'HanXRQChr02g0034131' => 'han', 'HanXRQChr02g0035981' => 'han', 'HanXRQChr02g0035991' => 'han', 'HanXRQChr05g0155611' => 'han', 'HanXRQChr05g0155621' => 'han', 'HanXRQChr08g0236501' => 'han', 'HanXRQChr09g0261321' => 'han', 'HanXRQChr09g0272081' => 'han', 'HanXRQChr10g0310741' => 'han', 'HanXRQChr11g0325591' => 'han', 'HanXRQChr12g0385691' => 'han', 'HanXRQChr13g0387801' => 'han', 'HanXRQChr15g0463011' => 'han', 'Haze_03826' => 'cav', 'Haze_03827' => 'cav', 'Haze_07183' => 'cav', 'Haze_07537' => 'cav', 'Haze_07539' => 'cav', 'Haze_12461' => 'cav', 'Haze_16115' => 'cav', 'Haze_16808' => 'cav', 'Haze_18531' => 'cav', 'Hma1.2p1_0046F.1_g026700' => 'hma', 'Hma1.2p1_0046F.1_g026710' => 'hma', 'Hma1.2p1_0168F.1_g074340' => 'hma', 'Hma1.2p1_0266F.1_g107030' => 'hma', 'Hma1.2p1_0266F.1_g107060' => 'hma', 'Hma1.2p1_0275F.1_g110510' => 'hma', 'Hma1.2p1_0592F.1_g185490' => 'hma', 'Hma1.2p1_0592F.1_g185500' => 'hma', 'Hma1.2p1_0592F.1_g185510' => 'hma', 'Hma1.2p1_0592F.1_g185520' => 'hma', 'Hma1.2p1_0592F.1_g185530' => 'hma', 'Hma1.2p1_0818F.1_g223450' => 'hma', 'HPP92_009708' => 'vpl', 'HPP92_009793' => 'vpl', 'HPP92_009796' => 'vpl', 'HPP92_009797' => 'vpl', 'HPP92_014940' => 'vpl', 'HPP92_014988' => 'vpl', 'Hund02463' => 'sun', 'Hund02760' => 'sun', 'Hund05071' => 'sun', 'Hund10108' => 'sun', 'Hund11204' => 'sun', 'Hund14016' => 'sun', 'Hund16464' => 'sun', 'Lalb_Chr09g0333391' => 'lal', 'Lalb_Chr11g0070461' => 'lal', 'Lalb_Chr12g0201671' => 'lal', 'Lalb_Chr13g0297161' => 'lal', 'Lj1g0002823' => 'lja', 'Lj3C1074T6' => 'lonja', 'Lj4A212T28' => 'lonja', 'Lj4g0005516' => 'lja', 'Lj4g0013705' => 'lja', 'Lj4g0027865' => 'lja', 'Lj5C92G16' => 'lonja', 'Lj5C92T12' => 'lonja', 'Lj7C596T3' => 'lonja', 'Lj9A446G59' => 'lonja', 'Lj9A482G21' => 'lonja', 'Lsat_1_v5_gn_1_28261' => 'lsa', 'Lsat_1_v5_gn_1_28281' => 'lsa', 'Lsat_1_v5_gn_1_32721' => 'lsa', 'Lsat_1_v5_gn_4_151760' => 'lsa', 'Lsat_1_v5_gn_4_2120' => 'lsa', 'Lsat_1_v5_gn_4_75761' => 'lsa', 'Lsat_1_v5_gn_5_10920' => 'lsa', 'Manes.02G099900' => 'mes', 'Manes.11G096200' => 'mes', 'Manes.12G007200' => 'mes', 'Manes.14G048300' => 'mes', 'Manes.17G114700' => 'mes', 'Mapoly0002s0070' => 'mpo', 'Mapoly0029s0099' => 'mpo', 'MBI07_g24742_MAGBIO' => 'mbi', 'MBI10_g27988_MAGBIO' => 'mbi', 'MBI11_g13057_MAGBIO' => 'mbi', 'MD02G1137200' => 'mdo', 'MD06G1137200' => 'mdo', 'MD07G1122300' => 'mdo', 'MD09G1078200' => 'mdo', 'MD13G1123700' => 'mdo', 'MD14G1151900' => 'mdo', 'MD17G1030900' => 'mdo', 'MD17G1068200' => 'mdo', 'MD17G1068600' => 'mdo', 'Medtr3g077540' => 'mtr', 'Medtr4g105530' => 'mtr', 'Medtr8g076580' => 'mtr', 'Medtr8g076590' => 'mtr', 'Medtr8g096410' => 'mtr', 'MELO3C016411.2' => 'cme', 'MELO3C017780.2' => 'cme', 'MELO3C022560.2' => 'cme', 'MELO3C026187.2' => 'cme', 'MELO3C026286.2' => 'cme', 'MELO3C032854.2' => 'cme', 'Migut.H02495' => 'egut', 'Migut.I00561' => 'egut', 'Migut.K01015' => 'egut', 'Migut.K01016' => 'egut', 'Migut.L00743' => 'egut', 'Migut.L00744' => 'egut', 'Migut.L00746' => 'egut', 'Migut.L00798' => 'egut', 'Migut.L00799' => 'egut', 'Migut.N02096' => 'egut', 'MSTRG.11259' => 'ama', 'MSTRG.23142' => 'ama', 'MSTRG.2499' => 'ama', 'Nitab4.5_0000003g0730' => 'nta', 'Nitab4.5_0000137g0020' => 'nta', 'Nitab4.5_0000721g0210' => 'nta', 'Nitab4.5_0000723g0050' => 'nta', 'Nitab4.5_0000913g0070' => 'nta', 'Nitab4.5_0001332g0040' => 'nta', 'Nitab4.5_0001771g0050' => 'nta', 'Nitab4.5_0001918g0050' => 'nta', 'Nitab4.5_0002686g0030' => 'nta', 'Nitab4.5_0003156g0020' => 'nta', 'Nitab4.5_0003383g0040' => 'nta', 'Nitab4.5_0003918g0010' => 'nta', 'Nitab4.5_0006760g0010' => 'nta', 'Nn1g05981' => 'nnu', 'Nn1g06288' => 'nnu', 'Nn3g16371' => 'nnu', 'Nn3g16786' => 'nnu', 'Nn4g22232' => 'nnu', 'Oeu005144.1' => 'oeu', 'Oeu005145.1' => 'oeu', 'Oeu011348.1' => 'oeu', 'Oeu016415.1' => 'oeu', 'Oeu023501.1' => 'oeu', 'Oeu044473.1' => 'oeu', 'Oeu048892.2' => 'oeu', 'Os01g0549200' => 'osa', 'Os02g0469300' => 'osa', 'Os04g0311100' => 'osa', 'Os06g0474900' => 'osa', 'Os10g0181700' => 'osa', 'Os11g0454800' => 'osa', 'Peaxi162Scf00037g00714' => 'pax', 'Peaxi162Scf00084g01217' => 'pax', 'Peaxi162Scf00257g00217' => 'pax', 'Peaxi162Scf00516g00215' => 'pax', 'Peaxi162Scf00689g00123' => 'pax', 'PGR044G2719' => 'pgr', 'PGR083G1360' => 'pgr', 'PGR102G2849' => 'pgr', 'PGR119G2534' => 'pgr', 'PGSC0003DMG400003538' => 'stu', 'PGSC0003DMG400028138' => 'stu', 'PGSC0003DMG400031732' => 'stu', 'PGSC0003DMG400038165' => 'stu', 'Phvul.002G284600' => 'pvu', 'Phvul.003G258200' => 'pvu', 'Phvul.009G176500' => 'pvu', 'Potri.003G167201' => 'ptr', 'Potri.005G118400' => 'ptr', 'Potri.012G089000' => 'ptr', 'Potri.012G102800' => 'ptr', 'Potri.015G079400' => 'ptr', 'Potri.015G100900' => 'ptr', 'Pp3c14_9810' => 'ppa', 'Pp3c15_10450' => 'ppa', 'Pp3c20_19150' => 'ppa', 'Pp3c23_12740' => 'ppa', 'Pp3c23_6310' => 'ppa', 'Pp3c24_3720' => 'ppa', 'Pp3c27_2580' => 'ppa', 'Pp3c9_8990' => 'ppa', 'PRCOL_00002854' => 'pco', 'Prupe.1G221200' => 'ppe', 'Prupe.3G289000' => 'ppe', 'Prupe.5G147000' => 'ppe', 'Prupe.6G157300' => 'ppe', 'Prupe.7G163400' => 'ppe', 'Psat0s2177g0040' => 'psa', 'Psat3g174760' => 'psa', 'Psat3g192160' => 'psa', 'Psat4g058520' => 'psa', 'Psat4g096840' => 'psa', 'Psat7g037320' => 'psa', 'PSO017G1274' => 'pso', 'PSO017G5166' => 'pso', 'PSO063G4558' => 'pso', 'PSO170G4458' => 'pso', 'PSO170G5005' => 'pso', 'PSO210G6156' => 'pso', 'PSO210G6635' => 'pso', 'PSO210G7397' => 'pso', 'PSO210G7700' => 'pso', 'PSO455G0035' => 'pso', 'PSO455G0180' => 'pso', 'PSO478G4515' => 'pso', 'PSO832G1305' => 'pso', 'PSO832G3489' => 'pso', 'QL02p075247' => 'qlo', 'QL03p051148' => 'qlo', 'QL05p010313' => 'qlo', 'QL06p034627' => 'qlo', 'QL10p001889' => 'qlo', 'QL10p010846' => 'qlo', 'RcHm_v2.0_Chr1g0350621' => 'rch', 'RcHm_v2.0_Chr1g0350641' => 'rch', 'RcHm_v2.0_Chr2g0092891' => 'rch', 'RcHm_v2.0_Chr2g0100251' => 'rch', 'RcHm_v2.0_Chr2g0158661' => 'rch', 'RcHm_v2.0_Chr2g0172741' => 'rch', 'RcHm_v2.0_Chr4g0429571' => 'rch', 'RcHm_v2.0_Chr5g0042471' => 'rch', 'RcHm_v2.0_Chr7g0189451' => 'rch', 'Rhsim08G0052000' => 'rsi', 'Rhsim08G0174400' => 'rsi', 'Rhsim08G0193200' => 'rsi', 'Rhsim10G0214800' => 'rsi', 'Rhsim10G0214900' => 'rsi', 'Rhsim10G0215000' => 'rsi', 'Rhsim12G0022900' => 'rsi', 'Rhsim12G0177500' => 'rsi', 'Rhsim12G0177700' => 'rsi', 'Sabra03G0122600' => 'sbr', 'Sabra05G0097400' => 'sbr', 'Sabra12G0064100' => 'sbr', 'Sabra15G0121300' => 'sbr', 'SalBow2G0642' => 'sbo', 'SalBow5G2667' => 'sbo', 'SalBow5G4873' => 'sbo', 'SalBow8G2395' => 'sbo', 'Sc03g0003290' => 'sci', 'Sc10g0010130' => 'sci', 'Sc22g0003650' => 'sci', 'Sed0001603' => 'sed', 'Sed0004259' => 'sed', 'Sed0006789' => 'sed', 'Sed0011838' => 'sed', 'Sed0012964' => 'sed', 'Sed0016383' => 'sed', 'Sed0019010' => 'sed', 'Sed0020188' => 'sed', 'SEGI_04702' => 'sgi', 'SEGI_17231' => 'sgi', 'SEGI_18877' => 'sgi', 'SEGI_25196' => 'sgi', 'SEGI_25515' => 'sgi', 'SEGI_28445' => 'sgi', 'SEGI_37452' => 'sgi', 'SGA_v2.0_scaffold188G40336' => 'sas', 'SGA_v2.0_scaffold228G43247' => 'sas', 'SGA_v2.0_scaffold280G46853' => 'sas', 'SGA_v2.0_scaffold34G13808' => 'sas', 'SGA_v2.0_scaffold40G15576' => 'sas', 'SGA_v2.0_scaffold611G53188' => 'sas', 'SGA_v2.0_scaffold78G25461' => 'sas', 'SGA_v2.0_scaffold90G27888' => 'sas', 'SHI08601' => 'shi', 'SHI08606' => 'shi', 'SHI17117' => 'shi', 'SHI17119' => 'shi', 'SMO118G0201' => 'smo', 'SMO169G0247' => 'smo', 'SMO176G0006' => 'smo', 'SMO176G0015' => 'smo', 'SMO202G0006' => 'smo', 'SMO240G0050' => 'smo', 'SMO286G0009' => 'smo', 'SMO338G0033' => 'smo', 'SMO356G0533' => 'smo', 'SMO364G0382' => 'smo', 'SMO367G0166' => 'smo', 'SMO367G1098' => 'smo', 'Solyc01g009920.3' => 'sly', 'Solyc01g099300.3' => 'sly', 'Solyc02g084700.3' => 'sly', 'Solyc03g097520.3' => 'sly', 'Solyc06g071580.3' => 'sly', 'Solyc10g081760.3' => 'sly', 'Sopen01g005480' => 'spe', 'Sopen01g042850' => 'spe', 'Sopen02g029370' => 'spe', 'Sopen03g028280' => 'spe', 'Sopen06g027870' => 'spe', 'Sopen10g032270' => 'spe', 'Sp5g18180' => 'spa', 'Sp6g12880' => 'spa', 'Sp6g30850' => 'spa', 'Sp7g22960' => 'spa', 'Sp7g34010' => 'spa', 'SpUn1326_0010' => 'spa', 'TAR371G0242' => 'tar', 'TAR622G0638' => 'tar', 'TAR628G1548' => 'tar', 'TAR629G1079' => 'tar', 'TAR629G3413' => 'tar', 'THA.LOC104804249' => 'tha', 'THA.LOC104808315' => 'tha', 'THA.LOC104809238' => 'tha', 'THA.LOC104825484' => 'tha', 'Thecc.01G025500' => 'tca', 'Thecc.03G015800' => 'tca', 'Thecc.03G018000' => 'tca', 'Thecc.03G134800' => 'tca', 'Thecc.04G014700' => 'tca', 'Thhalv10006991m.g' => 'esa', 'Thhalv10012707m.g' => 'esa', 'Thhalv10015739m.g' => 'esa', 'Thhalv10024553m.g' => 'esa', 'Thhalv10024673m.g' => 'esa', 'Thhalv10029187m.g' => 'esa', 'TPR.G12971' => 'tpr', 'TPR.G29396' => 'tpr', 'TPR.G33376' => 'tpr', 'TPR.G35508' => 'tpr', 'TPR.G35516' => 'tpr', 'TPR.G37317' => 'tpr', 'TPR.G37389' => 'tpr', 'TPR.G37523' => 'tpr', 'TPR.G559' => 'tpr', 'TWI14G0070' => 'twi', 'TWI14G0729' => 'twi', 'TWI18G0596' => 'twi', 'TWI39G0780' => 'twi', 'TWI39G0850' => 'twi', 'TWI73G1052' => 'twi', 'unitig_52.g17485' => 'ugi', 'unitig_61.g26355' => 'ugi', 'vmacro01040' => 'vma', 'vmacro16731' => 'vma', 'vmacro18270' => 'vma', 'vmacro19142' => 'vma', 'vmacro19407' => 'vma', 'vmacro19408' => 'vma', 'vmacro21899' => 'vma', 'vmacro21900' => 'vma', 'vmacro21901' => 'vma', 'VMungo0251G0490' => 'vmu', 'VMungo0251G1748' => 'vmu', 'VMungo1309G0421' => 'vmu', 'Zm00001eb086500' => 'zma', 'Zm00001eb150680' => 'zma', 'Zm00001eb162330' => 'zma', 'Zm00001eb203130' => 'zma', 'Zm00001eb369480' => 'zma', 'Zm00001eb382340' => 'zma', 'Zm00001eb416360' => 'zma' ), 'gf_id' => 'HOM05D000902', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000902' ), 'data_identifier' => 'HOM05D000902', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000902', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '663', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02470' => 'bna', 'A01p16260' => 'bna', 'A02p01680' => 'bna', 'A03p16600' => 'bna', 'A03p55660' => 'bna', 'A03p64160' => 'bna', 'A03p64170' => 'bna', 'A08p31900' => 'bna', 'A09p59530' => 'bna', 'A10p08230' => 'bna', 'A10p25090' => 'bna', 'Aa31LG3G7100' => 'aar', 'Aa31LG3G7110' => 'aar', 'Aa31LG6G13160' => 'aar', 'Aa31LG7G10770' => 'aar', 'Aa31LG7G3830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2723' => 'aag', 'Actinidia08045' => 'ach', 'Actinidia08888' => 'ach', 'Actinidia18333' => 'ach', 'Actinidia19334' => 'ach', 'Actinidia25552' => 'ach', 'Actinidia26089' => 'ach', 'Actinidia30615' => 'ach', 'Actinidia30616' => 'ach', 'Actinidia33083' => 'ach', 'Actinidia35762' => 'ach', 'Ah.02g110620' => 'amhyb', 'Ah.11g046390' => 'amhyb', 'AL1G31670' => 'aly', 'AL6G23730' => 'aly', 'AL7G14740' => 'aly', 'AL7G14750' => 'aly', 'AL7G14760' => 'aly', 'AL7G28220' => 'aly', 'AL8G24940' => 'aly', 'Aqoxy3G01665' => 'aox', 'Aqoxy3G02853' => 'aox', 'Aqoxy5G01513' => 'aox', 'Aqoxy5G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8SKA4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ75LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKDA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0LJZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7REX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZP4YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWX7I5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2QKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS0L9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPCD8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q161UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC7XCF' => 'arhy', 'AT1G19100' => 'ath', 'AT4G24970' => 'ath', 'AT4G36270' => 'ath', 'AT4G36280' => 'ath', 'AT4G36290' => 'ath', 'AT5G13130' => 'ath', 'AT5G50780' => 'ath', 'ATR0582G266' => 'atr', 'ATR0661G195' => 'atr', 'ATR1152G031' => 'atr', 'Atru.chr11.2382' => 'acertr', 'Atru.chr12.2337' => 'acertr', 'Atru.chr3.744' => 'acertr', 'Atru.chr6.1870' => 'acertr', 'Atru.chr9.2515' => 'acertr', 'AUR62004120' => 'cqu', 'AUR62005667' => 'cqu', 'AUR62007634' => 'cqu', 'AUR62008186' => 'cqu', 'AUR62008187' => 'cqu', 'AUR62008188' => 'cqu', 'AUR62027954' => 'cqu', 'AUR62028766' => 'cqu', 'AUR62028767' => 'cqu', 'AUR62028768' => 'cqu', 'AUR62028886' => 'cqu', 'AUR62029563' => 'cqu', 'AUR62038832' => 'cqu', 'BcaB01g04149' => 'bca', 'BcaB03g12940' => 'bca', 'BcaB03g13090' => 'bca', 'BcaB03g14466' => 'bca', 'BcaB05g24035' => 'bca', 'BcaC01g06050' => 'bca', 'BcaC04g19148' => 'bca', 'BcaC04g20761' => 'bca', 'BcaC06g32845' => 'bca', 'BcaC07g41274' => 'bca', 'BcaC09g50827' => 'bca', 'BcaNung00741' => 'bca', 'BcaNung00742' => 'bca', 'BcaNung01859' => 'bca', 'BcaNung03985' => 'bca', 'BcaNung03989' => 'bca', 'BcaNung05661' => 'bca', 'BolC1t00257H' => 'bol', 'BolC1t01956H' => 'bol', 'BolC2t06534H' => 'bol', 'BolC3t14334H' => 'bol', 'BolC5t30451H' => 'bol', 'BolC7t45880H' => 'bol', 'BolC7t46586H' => 'bol', 'BolC8t49301H' => 'bol', 'BolC8t51837H' => 'bol', 'BolC9t56822H' => 'bol', 'BolC9t59235H' => 'bol', 'BraA01t00234Z' => 'bra', 'BraA01t01563Z' => 'bra', 'BraA02t05147Z' => 'bra', 'BraA03t10947Z' => 'bra', 'BraA03t14633Z' => 'bra', 'BraA08t35112Z' => 'bra', 'BraA09t41330Z' => 'bra', 'BraA10t44570Z' => 'bra', 'C01p02670' => 'bna', 'C01p20260' => 'bna', 'C02p05890' => 'bna', 'C03p19530' => 'bna', 'C05p17470' => 'bna', 'C07p53900' => 'bna', 'C07p61630' => 'bna', 'C08p16800' => 'bna', 'C08p42810' => 'bna', 'C09p39480' => 'bna', 'C09p63980' => 'bna', 'CAN.G1001.7' => 'can', 'CAN.G1034.55' => 'can', 'CAN.G143.7' => 'can', 'CAN.G3340.1' => 'can', 'CAN.G358.19' => 'can', 'CAN.G373.2' => 'can', 'CAN.G674.16' => 'can', 'CAN.G674.17' => 'can', 'CAN.G674.18' => 'can', 'CAN.G732.2' => 'can', 'CAN.G732.3' => 'can', 'CAN.G993.39' => 'can', 'CANSAT01G2052' => 'cansat', 'CANSAT80G0070' => 'cansat', 'CANSAT80G0483' => 'cansat', 'CANSAT80G0625' => 'cansat', 'CARHR019690' => 'chi', 'CARHR080280' => 'chi', 'CARHR152750' => 'chi', 'CARHR152760' => 'chi', 'CARHR152770' => 'chi', 'CARHR200340' => 'chi', 'CARHR232370' => 'chi', 'CARHR244670' => 'chi', 'CARHR244680' => 'chi', 'CARHR257520' => 'chi', 'Carub.0001s1872' => 'cru', 'Carub.0006s1130' => 'cru', 'Carub.0007s0396' => 'cru', 'Carub.0007s0397' => 'cru', 'Carub.0007s1608' => 'cru', 'Carub.0008s1068' => 'cru', 'Carub.0008s1077' => 'cru', 'Ca_16158_v3' => 'car', 'Ca_17571_v3' => 'car', 'Ca_21936_v3' => 'car', 'Ca_22350_v3' => 'car', 'CBR_g22445' => 'cbr', 'CBR_g26290' => 'cbr', 'Cc04_g09610' => 'ccan', 'Cc04_g12280' => 'ccan', 'Cc07_g10230' => 'ccan', 'CDE02G0093' => 'cde', 'CDE02G0701' => 'cde', 'CDE04G1050' => 'cde', 'CDE05G1833' => 'cde', 'CDE05G3058' => 'cde', 'CDE05G3380' => 'cde', 'CDE06G0536' => 'cde', 'Cfa006923' => 'cfa', 'Cfa009402' => 'cfa', 'Cfa018751' => 'cfa', 'Cfa019164' => 'cfa', 'Cfa022935' => 'cfa', 'Ciclev10019081m.g' => 'ccl', 'Ciclev10025076m.g' => 'ccl', 'Ciclev10030712m.g' => 'ccl', 'Ciclev10033760m.g' => 'ccl', 'CiPaw.05G105600' => 'cil', 'CiPaw.08G136700' => 'cil', 'CiPaw.11G003900' => 'cil', 'CiPaw.11G023700' => 'cil', 'CiPaw.12G003700' => 'cil', 'ClCG06G017100' => 'cla', 'ClCG06G018110' => 'cla', 'ClCG07G008800' => 'cla', 'ClCG07G015330' => 'cla', 'COL.COLO4_13698' => 'col', 'COL.COLO4_16659' => 'col', 'COL.COLO4_21986' => 'col', 'COL.COLO4_24049' => 'col', 'COL.COLO4_29061' => 'col', 'COL.COLO4_29075' => 'col', 'COL.COLO4_30094' => 'col', 'Cpa.g.c33689' => 'cpa', 'Cpa.g.sc108.39' => 'cpa', 'Cpa.g.sc108.41' => 'cpa', 'Cpa.g.sc1163.1' => 'cpa', 'Cpa.g.sc4.155' => 'cpa', 'Cpa.g.sc6.194' => 'cpa', 'CsaV3_1G000340' => 'csa', 'CsaV3_1G001400' => 'csa', 'CsaV3_4G002220' => 'csa', 'CsaV3_4G005370' => 'csa', 'CSS0007487' => 'camsi', 'CSS0008066' => 'camsi', 'CSS0009120' => 'camsi', 'CSS0015512' => 'camsi', 'CSS0022409' => 'camsi', 'CSS0025358' => 'camsi', 'CSS0044547' => 'camsi', 'DCAR_013057' => 'dca', 'DCAR_015058' => 'dca', 'DCAR_016027' => 'dca', 'DCAR_017327' => 'dca', 'DCAR_020743' => 'dca', 'DCAR_026157' => 'dca', 'DCAR_032339' => 'dca', 'DCAR_032340' => 'dca', 'Dinv11200' => 'din', 'Dinv11201' => 'din', 'Dinv20631' => 'din', 'Dinv23182' => 'din', 'Dinv33466' => 'din', 'Dinv33583' => 'din', 'Dinv38565' => 'din', 'Duzib068G0200' => 'dzi', 'Duzib147G0132' => 'dzi', 'Duzib147G0635' => 'dzi', 'Duzib205G1670' => 'dzi', 'Duzib251G0606' => 'dzi', 'ECA232G3336' => 'eca', 'ECA232G3763' => 'eca', 'ECA232G4845' => 'eca', 'ECA234G1607' => 'eca', 'ECA246G0932' => 'eca', 'ECA247G0781' => 'eca', 'ECA247G1932' => 'eca', 'ECA247G2079' => 'eca', 'ECA247G3338' => 'eca', 'ECA247G4115' => 'eca', 'EL10Ac3g06552' => 'bvu', 'EL10Ac5g10721' => 'bvu', 'EL10Ac5g10722' => 'bvu', 'EL10Ac5g10723' => 'bvu', 'EL10Ac5g11361' => 'bvu', 'EL10Ac6g13553' => 'bvu', 'EL10As8g23872' => 'bvu', 'Eucgr.B00250' => 'egr', 'Eucgr.B00251' => 'egr', 'Eucgr.B03533' => 'egr', 'Eucgr.I02381' => 'egr', 'Eucgr.K02700' => 'egr', 'FAN02G0174' => 'fan', 'FAN02G3146' => 'fan', 'FAN04G1672' => 'fan', 'FAN04G2273' => 'fan', 'FAN05G2791' => 'fan', 'FAN05G4035' => 'fan', 'FAN07G0834' => 'fan', 'FAN08G1198' => 'fan', 'FAN09G4182' => 'fan', 'FAN12G0496' => 'fan', 'FAN13G1027' => 'fan', 'FAN13G2951' => 'fan', 'FAN14G0705' => 'fan', 'FAN14G0720' => 'fan', 'FAN17G0201' => 'fan', 'FAN17G2665' => 'fan', 'FAN18G1456' => 'fan', 'FAN18G1525' => 'fan', 'FAN18G3500' => 'fan', 'FAN28G2670' => 'fan', 'FvH4_1g12391' => 'fve', 'FvH4_4g23220' => 'fve', 'FvH4_5g08810' => 'fve', 'FvH4_5g28960' => 'fve', 'FvH4_6g42820' => 'fve', 'FvH4_6g51110' => 'fve', 'Glyma.02G051802' => 'gma', 'Glyma.04G185300' => 'gma', 'Glyma.05G202900' => 'gma', 'Glyma.08G010300' => 'gma', 'Glyma.16G131900' => 'gma', 'Glyma.17G087900' => 'gma', 'Gohir.A07G048600' => 'ghi', 'Gohir.A11G179000' => 'ghi', 'Gohir.A12G140900' => 'ghi', 'Gohir.A12G140950' => 'ghi', 'Gohir.A12G191700' => 'ghi', 'Gohir.A13G086300' => 'ghi', 'Gohir.D07G052900' => 'ghi', 'Gohir.D11G186600' => 'ghi', 'Gohir.D12G145575' => 'ghi', 'Gohir.D12G145650' => 'ghi', 'Gohir.D12G145725' => 'ghi', 'Gohir.D12G194050' => 'ghi', 'Gohir.D13G091800' => 'ghi', 'Gorai.001G055900' => 'gra', 'Gorai.007G198400' => 'gra', 'Gorai.008G157000' => 'gra', 'Gorai.008G157100' => 'gra', 'Gorai.008G208700' => 'gra', 'Gorai.010G138700' => 'gra', 'GSVIVG01000977001' => 'vvi', 'GSVIVG01007708001' => 'vvi', 'GSVIVG01008587001' => 'vvi', 'GSVIVG01018849001' => 'vvi', 'GSVIVG01032432001' => 'vvi', 'HanXRQChr02g0034131' => 'han', 'HanXRQChr02g0035981' => 'han', 'HanXRQChr02g0035991' => 'han', 'HanXRQChr05g0155611' => 'han', 'HanXRQChr05g0155621' => 'han', 'HanXRQChr08g0236501' => 'han', 'HanXRQChr09g0261321' => 'han', 'HanXRQChr09g0272081' => 'han', 'HanXRQChr10g0310741' => 'han', 'HanXRQChr11g0325591' => 'han', 'HanXRQChr12g0385691' => 'han', 'HanXRQChr13g0387801' => 'han', 'HanXRQChr15g0463011' => 'han', 'Haze_03826' => 'cav', 'Haze_03827' => 'cav', 'Haze_07183' => 'cav', 'Haze_07537' => 'cav', 'Haze_07539' => 'cav', 'Haze_12461' => 'cav', 'Haze_16115' => 'cav', 'Haze_16808' => 'cav', 'Haze_18531' => 'cav', 'Hma1.2p1_0046F.1_g026700' => 'hma', 'Hma1.2p1_0046F.1_g026710' => 'hma', 'Hma1.2p1_0168F.1_g074340' => 'hma', 'Hma1.2p1_0266F.1_g107030' => 'hma', 'Hma1.2p1_0266F.1_g107060' => 'hma', 'Hma1.2p1_0275F.1_g110510' => 'hma', 'Hma1.2p1_0592F.1_g185490' => 'hma', 'Hma1.2p1_0592F.1_g185500' => 'hma', 'Hma1.2p1_0592F.1_g185510' => 'hma', 'Hma1.2p1_0592F.1_g185520' => 'hma', 'Hma1.2p1_0592F.1_g185530' => 'hma', 'Hma1.2p1_0818F.1_g223450' => 'hma', 'HPP92_009708' => 'vpl', 'HPP92_009793' => 'vpl', 'HPP92_009796' => 'vpl', 'HPP92_009797' => 'vpl', 'HPP92_014940' => 'vpl', 'HPP92_014988' => 'vpl', 'Hund02463' => 'sun', 'Hund02760' => 'sun', 'Hund05071' => 'sun', 'Hund10108' => 'sun', 'Hund11204' => 'sun', 'Hund14016' => 'sun', 'Hund16464' => 'sun', 'Lalb_Chr09g0333391' => 'lal', 'Lalb_Chr11g0070461' => 'lal', 'Lalb_Chr12g0201671' => 'lal', 'Lalb_Chr13g0297161' => 'lal', 'Lj1g0002823' => 'lja', 'Lj3C1074T6' => 'lonja', 'Lj4A212T28' => 'lonja', 'Lj4g0005516' => 'lja', 'Lj4g0013705' => 'lja', 'Lj4g0027865' => 'lja', 'Lj5C92G16' => 'lonja', 'Lj5C92T12' => 'lonja', 'Lj7C596T3' => 'lonja', 'Lj9A446G59' => 'lonja', 'Lj9A482G21' => 'lonja', 'Lsat_1_v5_gn_1_28261' => 'lsa', 'Lsat_1_v5_gn_1_28281' => 'lsa', 'Lsat_1_v5_gn_1_32721' => 'lsa', 'Lsat_1_v5_gn_4_151760' => 'lsa', 'Lsat_1_v5_gn_4_2120' => 'lsa', 'Lsat_1_v5_gn_4_75761' => 'lsa', 'Lsat_1_v5_gn_5_10920' => 'lsa', 'Manes.02G099900' => 'mes', 'Manes.11G096200' => 'mes', 'Manes.12G007200' => 'mes', 'Manes.14G048300' => 'mes', 'Manes.17G114700' => 'mes', 'Mapoly0002s0070' => 'mpo', 'Mapoly0029s0099' => 'mpo', 'MBI07_g24742_MAGBIO' => 'mbi', 'MBI10_g27988_MAGBIO' => 'mbi', 'MBI11_g13057_MAGBIO' => 'mbi', 'MD02G1137200' => 'mdo', 'MD06G1137200' => 'mdo', 'MD07G1122300' => 'mdo', 'MD09G1078200' => 'mdo', 'MD13G1123700' => 'mdo', 'MD14G1151900' => 'mdo', 'MD17G1030900' => 'mdo', 'MD17G1068200' => 'mdo', 'MD17G1068600' => 'mdo', 'Medtr3g077540' => 'mtr', 'Medtr4g105530' => 'mtr', 'Medtr8g076580' => 'mtr', 'Medtr8g076590' => 'mtr', 'Medtr8g096410' => 'mtr', 'MELO3C016411.2' => 'cme', 'MELO3C017780.2' => 'cme', 'MELO3C022560.2' => 'cme', 'MELO3C026187.2' => 'cme', 'MELO3C026286.2' => 'cme', 'MELO3C032854.2' => 'cme', 'Migut.H02495' => 'egut', 'Migut.I00561' => 'egut', 'Migut.K01015' => 'egut', 'Migut.K01016' => 'egut', 'Migut.L00743' => 'egut', 'Migut.L00744' => 'egut', 'Migut.L00746' => 'egut', 'Migut.L00798' => 'egut', 'Migut.L00799' => 'egut', 'Migut.N02096' => 'egut', 'MSTRG.11259' => 'ama', 'MSTRG.23142' => 'ama', 'MSTRG.2499' => 'ama', 'Nitab4.5_0000003g0730' => 'nta', 'Nitab4.5_0000137g0020' => 'nta', 'Nitab4.5_0000721g0210' => 'nta', 'Nitab4.5_0000723g0050' => 'nta', 'Nitab4.5_0000913g0070' => 'nta', 'Nitab4.5_0001332g0040' => 'nta', 'Nitab4.5_0001771g0050' => 'nta', 'Nitab4.5_0001918g0050' => 'nta', 'Nitab4.5_0002686g0030' => 'nta', 'Nitab4.5_0003156g0020' => 'nta', 'Nitab4.5_0003383g0040' => 'nta', 'Nitab4.5_0003918g0010' => 'nta', 'Nitab4.5_0006760g0010' => 'nta', 'Nn1g05981' => 'nnu', 'Nn1g06288' => 'nnu', 'Nn3g16371' => 'nnu', 'Nn3g16786' => 'nnu', 'Nn4g22232' => 'nnu', 'Oeu005144.1' => 'oeu', 'Oeu005145.1' => 'oeu', 'Oeu011348.1' => 'oeu', 'Oeu016415.1' => 'oeu', 'Oeu023501.1' => 'oeu', 'Oeu044473.1' => 'oeu', 'Oeu048892.2' => 'oeu', 'Os01g0549200' => 'osa', 'Os02g0469300' => 'osa', 'Os04g0311100' => 'osa', 'Os06g0474900' => 'osa', 'Os10g0181700' => 'osa', 'Os11g0454800' => 'osa', 'Peaxi162Scf00037g00714' => 'pax', 'Peaxi162Scf00084g01217' => 'pax', 'Peaxi162Scf00257g00217' => 'pax', 'Peaxi162Scf00516g00215' => 'pax', 'Peaxi162Scf00689g00123' => 'pax', 'PGR044G2719' => 'pgr', 'PGR083G1360' => 'pgr', 'PGR102G2849' => 'pgr', 'PGR119G2534' => 'pgr', 'PGSC0003DMG400003538' => 'stu', 'PGSC0003DMG400028138' => 'stu', 'PGSC0003DMG400031732' => 'stu', 'PGSC0003DMG400038165' => 'stu', 'Phvul.002G284600' => 'pvu', 'Phvul.003G258200' => 'pvu', 'Phvul.009G176500' => 'pvu', 'Potri.003G167201' => 'ptr', 'Potri.005G118400' => 'ptr', 'Potri.012G089000' => 'ptr', 'Potri.012G102800' => 'ptr', 'Potri.015G079400' => 'ptr', 'Potri.015G100900' => 'ptr', 'Pp3c14_9810' => 'ppa', 'Pp3c15_10450' => 'ppa', 'Pp3c20_19150' => 'ppa', 'Pp3c23_12740' => 'ppa', 'Pp3c23_6310' => 'ppa', 'Pp3c24_3720' => 'ppa', 'Pp3c27_2580' => 'ppa', 'Pp3c9_8990' => 'ppa', 'PRCOL_00002854' => 'pco', 'Prupe.1G221200' => 'ppe', 'Prupe.3G289000' => 'ppe', 'Prupe.5G147000' => 'ppe', 'Prupe.6G157300' => 'ppe', 'Prupe.7G163400' => 'ppe', 'Psat0s2177g0040' => 'psa', 'Psat3g174760' => 'psa', 'Psat3g192160' => 'psa', 'Psat4g058520' => 'psa', 'Psat4g096840' => 'psa', 'Psat7g037320' => 'psa', 'PSO017G1274' => 'pso', 'PSO017G5166' => 'pso', 'PSO063G4558' => 'pso', 'PSO170G4458' => 'pso', 'PSO170G5005' => 'pso', 'PSO210G6156' => 'pso', 'PSO210G6635' => 'pso', 'PSO210G7397' => 'pso', 'PSO210G7700' => 'pso', 'PSO455G0035' => 'pso', 'PSO455G0180' => 'pso', 'PSO478G4515' => 'pso', 'PSO832G1305' => 'pso', 'PSO832G3489' => 'pso', 'QL02p075247' => 'qlo', 'QL03p051148' => 'qlo', 'QL05p010313' => 'qlo', 'QL06p034627' => 'qlo', 'QL10p001889' => 'qlo', 'QL10p010846' => 'qlo', 'RcHm_v2.0_Chr1g0350621' => 'rch', 'RcHm_v2.0_Chr1g0350641' => 'rch', 'RcHm_v2.0_Chr2g0092891' => 'rch', 'RcHm_v2.0_Chr2g0100251' => 'rch', 'RcHm_v2.0_Chr2g0158661' => 'rch', 'RcHm_v2.0_Chr2g0172741' => 'rch', 'RcHm_v2.0_Chr4g0429571' => 'rch', 'RcHm_v2.0_Chr5g0042471' => 'rch', 'RcHm_v2.0_Chr7g0189451' => 'rch', 'Rhsim08G0052000' => 'rsi', 'Rhsim08G0174400' => 'rsi', 'Rhsim08G0193200' => 'rsi', 'Rhsim10G0214800' => 'rsi', 'Rhsim10G0214900' => 'rsi', 'Rhsim10G0215000' => 'rsi', 'Rhsim12G0022900' => 'rsi', 'Rhsim12G0177500' => 'rsi', 'Rhsim12G0177700' => 'rsi', 'Sabra03G0122600' => 'sbr', 'Sabra05G0097400' => 'sbr', 'Sabra12G0064100' => 'sbr', 'Sabra15G0121300' => 'sbr', 'SalBow2G0642' => 'sbo', 'SalBow5G2667' => 'sbo', 'SalBow5G4873' => 'sbo', 'SalBow8G2395' => 'sbo', 'Sc03g0003290' => 'sci', 'Sc10g0010130' => 'sci', 'Sc22g0003650' => 'sci', 'Sed0001603' => 'sed', 'Sed0004259' => 'sed', 'Sed0006789' => 'sed', 'Sed0011838' => 'sed', 'Sed0012964' => 'sed', 'Sed0016383' => 'sed', 'Sed0019010' => 'sed', 'Sed0020188' => 'sed', 'SEGI_04702' => 'sgi', 'SEGI_17231' => 'sgi', 'SEGI_18877' => 'sgi', 'SEGI_25196' => 'sgi', 'SEGI_25515' => 'sgi', 'SEGI_28445' => 'sgi', 'SEGI_37452' => 'sgi', 'SGA_v2.0_scaffold188G40336' => 'sas', 'SGA_v2.0_scaffold228G43247' => 'sas', 'SGA_v2.0_scaffold280G46853' => 'sas', 'SGA_v2.0_scaffold34G13808' => 'sas', 'SGA_v2.0_scaffold40G15576' => 'sas', 'SGA_v2.0_scaffold611G53188' => 'sas', 'SGA_v2.0_scaffold78G25461' => 'sas', 'SGA_v2.0_scaffold90G27888' => 'sas', 'SHI08601' => 'shi', 'SHI08606' => 'shi', 'SHI17117' => 'shi', 'SHI17119' => 'shi', 'SMO118G0201' => 'smo', 'SMO169G0247' => 'smo', 'SMO176G0006' => 'smo', 'SMO176G0015' => 'smo', 'SMO202G0006' => 'smo', 'SMO240G0050' => 'smo', 'SMO286G0009' => 'smo', 'SMO338G0033' => 'smo', 'SMO356G0533' => 'smo', 'SMO364G0382' => 'smo', 'SMO367G0166' => 'smo', 'SMO367G1098' => 'smo', 'Solyc01g009920.3' => 'sly', 'Solyc01g099300.3' => 'sly', 'Solyc02g084700.3' => 'sly', 'Solyc03g097520.3' => 'sly', 'Solyc06g071580.3' => 'sly', 'Solyc10g081760.3' => 'sly', 'Sopen01g005480' => 'spe', 'Sopen01g042850' => 'spe', 'Sopen02g029370' => 'spe', 'Sopen03g028280' => 'spe', 'Sopen06g027870' => 'spe', 'Sopen10g032270' => 'spe', 'Sp5g18180' => 'spa', 'Sp6g12880' => 'spa', 'Sp6g30850' => 'spa', 'Sp7g22960' => 'spa', 'Sp7g34010' => 'spa', 'SpUn1326_0010' => 'spa', 'TAR371G0242' => 'tar', 'TAR622G0638' => 'tar', 'TAR628G1548' => 'tar', 'TAR629G1079' => 'tar', 'TAR629G3413' => 'tar', 'THA.LOC104804249' => 'tha', 'THA.LOC104808315' => 'tha', 'THA.LOC104809238' => 'tha', 'THA.LOC104825484' => 'tha', 'Thecc.01G025500' => 'tca', 'Thecc.03G015800' => 'tca', 'Thecc.03G018000' => 'tca', 'Thecc.03G134800' => 'tca', 'Thecc.04G014700' => 'tca', 'Thhalv10006991m.g' => 'esa', 'Thhalv10012707m.g' => 'esa', 'Thhalv10015739m.g' => 'esa', 'Thhalv10024553m.g' => 'esa', 'Thhalv10024673m.g' => 'esa', 'Thhalv10029187m.g' => 'esa', 'TPR.G12971' => 'tpr', 'TPR.G29396' => 'tpr', 'TPR.G33376' => 'tpr', 'TPR.G35508' => 'tpr', 'TPR.G35516' => 'tpr', 'TPR.G37317' => 'tpr', 'TPR.G37389' => 'tpr', 'TPR.G37523' => 'tpr', 'TPR.G559' => 'tpr', 'TWI14G0070' => 'twi', 'TWI14G0729' => 'twi', 'TWI18G0596' => 'twi', 'TWI39G0780' => 'twi', 'TWI39G0850' => 'twi', 'TWI73G1052' => 'twi', 'unitig_52.g17485' => 'ugi', 'unitig_61.g26355' => 'ugi', 'vmacro01040' => 'vma', 'vmacro16731' => 'vma', 'vmacro18270' => 'vma', 'vmacro19142' => 'vma', 'vmacro19407' => 'vma', 'vmacro19408' => 'vma', 'vmacro21899' => 'vma', 'vmacro21900' => 'vma', 'vmacro21901' => 'vma', 'VMungo0251G0490' => 'vmu', 'VMungo0251G1748' => 'vmu', 'VMungo1309G0421' => 'vmu', 'Zm00001eb086500' => 'zma', 'Zm00001eb150680' => 'zma', 'Zm00001eb162330' => 'zma', 'Zm00001eb203130' => 'zma', 'Zm00001eb369480' => 'zma', 'Zm00001eb382340' => 'zma', 'Zm00001eb416360' => 'zma' ) $gf_id = 'HOM05D000902' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000902' ) $data_identifier = 'HOM05D000902' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 13, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 10, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 6, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 9, 'hma' => (int) 12, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 4, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 6, 'ppa' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 6, 'rch' => (int) 9, 'rsi' => (int) 9, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 12, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 3, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416360' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000902', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '663', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02470' => 'bna', 'A01p16260' => 'bna', 'A02p01680' => 'bna', 'A03p16600' => 'bna', 'A03p55660' => 'bna', 'A03p64160' => 'bna', 'A03p64170' => 'bna', 'A08p31900' => 'bna', 'A09p59530' => 'bna', 'A10p08230' => 'bna', 'A10p25090' => 'bna', 'Aa31LG3G7100' => 'aar', 'Aa31LG3G7110' => 'aar', 'Aa31LG6G13160' => 'aar', 'Aa31LG7G10770' => 'aar', 'Aa31LG7G3830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2723' => 'aag', 'Actinidia08045' => 'ach', 'Actinidia08888' => 'ach', 'Actinidia18333' => 'ach', 'Actinidia19334' => 'ach', 'Actinidia25552' => 'ach', 'Actinidia26089' => 'ach', 'Actinidia30615' => 'ach', 'Actinidia30616' => 'ach', 'Actinidia33083' => 'ach', 'Actinidia35762' => 'ach', 'Ah.02g110620' => 'amhyb', 'Ah.11g046390' => 'amhyb', 'AL1G31670' => 'aly', 'AL6G23730' => 'aly', 'AL7G14740' => 'aly', 'AL7G14750' => 'aly', 'AL7G14760' => 'aly', 'AL7G28220' => 'aly', 'AL8G24940' => 'aly', 'Aqoxy3G01665' => 'aox', 'Aqoxy3G02853' => 'aox', 'Aqoxy5G01513' => 'aox', 'Aqoxy5G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8SKA4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ75LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKDA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0LJZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7REX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZP4YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWX7I5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2QKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS0L9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPCD8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q161UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC7XCF' => 'arhy', 'AT1G19100' => 'ath', 'AT4G24970' => 'ath', 'AT4G36270' => 'ath', 'AT4G36280' => 'ath', 'AT4G36290' => 'ath', 'AT5G13130' => 'ath', 'AT5G50780' => 'ath', 'ATR0582G266' => 'atr', 'ATR0661G195' => 'atr', 'ATR1152G031' => 'atr', 'Atru.chr11.2382' => 'acertr', 'Atru.chr12.2337' => 'acertr', 'Atru.chr3.744' => 'acertr', 'Atru.chr6.1870' => 'acertr', 'Atru.chr9.2515' => 'acertr', 'AUR62004120' => 'cqu', 'AUR62005667' => 'cqu', 'AUR62007634' => 'cqu', 'AUR62008186' => 'cqu', 'AUR62008187' => 'cqu', 'AUR62008188' => 'cqu', 'AUR62027954' => 'cqu', 'AUR62028766' => 'cqu', 'AUR62028767' => 'cqu', 'AUR62028768' => 'cqu', 'AUR62028886' => 'cqu', 'AUR62029563' => 'cqu', 'AUR62038832' => 'cqu', 'BcaB01g04149' => 'bca', 'BcaB03g12940' => 'bca', 'BcaB03g13090' => 'bca', 'BcaB03g14466' => 'bca', 'BcaB05g24035' => 'bca', 'BcaC01g06050' => 'bca', 'BcaC04g19148' => 'bca', 'BcaC04g20761' => 'bca', 'BcaC06g32845' => 'bca', 'BcaC07g41274' => 'bca', 'BcaC09g50827' => 'bca', 'BcaNung00741' => 'bca', 'BcaNung00742' => 'bca', 'BcaNung01859' => 'bca', 'BcaNung03985' => 'bca', 'BcaNung03989' => 'bca', 'BcaNung05661' => 'bca', 'BolC1t00257H' => 'bol', 'BolC1t01956H' => 'bol', 'BolC2t06534H' => 'bol', 'BolC3t14334H' => 'bol', 'BolC5t30451H' => 'bol', 'BolC7t45880H' => 'bol', 'BolC7t46586H' => 'bol', 'BolC8t49301H' => 'bol', 'BolC8t51837H' => 'bol', 'BolC9t56822H' => 'bol', 'BolC9t59235H' => 'bol', 'BraA01t00234Z' => 'bra', 'BraA01t01563Z' => 'bra', 'BraA02t05147Z' => 'bra', 'BraA03t10947Z' => 'bra', 'BraA03t14633Z' => 'bra', 'BraA08t35112Z' => 'bra', 'BraA09t41330Z' => 'bra', 'BraA10t44570Z' => 'bra', 'C01p02670' => 'bna', 'C01p20260' => 'bna', 'C02p05890' => 'bna', 'C03p19530' => 'bna', 'C05p17470' => 'bna', 'C07p53900' => 'bna', 'C07p61630' => 'bna', 'C08p16800' => 'bna', 'C08p42810' => 'bna', 'C09p39480' => 'bna', 'C09p63980' => 'bna', 'CAN.G1001.7' => 'can', 'CAN.G1034.55' => 'can', 'CAN.G143.7' => 'can', 'CAN.G3340.1' => 'can', 'CAN.G358.19' => 'can', 'CAN.G373.2' => 'can', 'CAN.G674.16' => 'can', 'CAN.G674.17' => 'can', 'CAN.G674.18' => 'can', 'CAN.G732.2' => 'can', 'CAN.G732.3' => 'can', 'CAN.G993.39' => 'can', 'CANSAT01G2052' => 'cansat', 'CANSAT80G0070' => 'cansat', 'CANSAT80G0483' => 'cansat', 'CANSAT80G0625' => 'cansat', 'CARHR019690' => 'chi', 'CARHR080280' => 'chi', 'CARHR152750' => 'chi', 'CARHR152760' => 'chi', 'CARHR152770' => 'chi', 'CARHR200340' => 'chi', 'CARHR232370' => 'chi', 'CARHR244670' => 'chi', 'CARHR244680' => 'chi', 'CARHR257520' => 'chi', 'Carub.0001s1872' => 'cru', 'Carub.0006s1130' => 'cru', 'Carub.0007s0396' => 'cru', 'Carub.0007s0397' => 'cru', 'Carub.0007s1608' => 'cru', 'Carub.0008s1068' => 'cru', 'Carub.0008s1077' => 'cru', 'Ca_16158_v3' => 'car', 'Ca_17571_v3' => 'car', 'Ca_21936_v3' => 'car', 'Ca_22350_v3' => 'car', 'CBR_g22445' => 'cbr', 'CBR_g26290' => 'cbr', 'Cc04_g09610' => 'ccan', 'Cc04_g12280' => 'ccan', 'Cc07_g10230' => 'ccan', 'CDE02G0093' => 'cde', 'CDE02G0701' => 'cde', 'CDE04G1050' => 'cde', 'CDE05G1833' => 'cde', 'CDE05G3058' => 'cde', 'CDE05G3380' => 'cde', 'CDE06G0536' => 'cde', 'Cfa006923' => 'cfa', 'Cfa009402' => 'cfa', 'Cfa018751' => 'cfa', 'Cfa019164' => 'cfa', 'Cfa022935' => 'cfa', 'Ciclev10019081m.g' => 'ccl', 'Ciclev10025076m.g' => 'ccl', 'Ciclev10030712m.g' => 'ccl', 'Ciclev10033760m.g' => 'ccl', 'CiPaw.05G105600' => 'cil', 'CiPaw.08G136700' => 'cil', 'CiPaw.11G003900' => 'cil', 'CiPaw.11G023700' => 'cil', 'CiPaw.12G003700' => 'cil', 'ClCG06G017100' => 'cla', 'ClCG06G018110' => 'cla', 'ClCG07G008800' => 'cla', 'ClCG07G015330' => 'cla', 'COL.COLO4_13698' => 'col', 'COL.COLO4_16659' => 'col', 'COL.COLO4_21986' => 'col', 'COL.COLO4_24049' => 'col', 'COL.COLO4_29061' => 'col', 'COL.COLO4_29075' => 'col', 'COL.COLO4_30094' => 'col', 'Cpa.g.c33689' => 'cpa', 'Cpa.g.sc108.39' => 'cpa', 'Cpa.g.sc108.41' => 'cpa', 'Cpa.g.sc1163.1' => 'cpa', 'Cpa.g.sc4.155' => 'cpa', 'Cpa.g.sc6.194' => 'cpa', 'CsaV3_1G000340' => 'csa', 'CsaV3_1G001400' => 'csa', 'CsaV3_4G002220' => 'csa', 'CsaV3_4G005370' => 'csa', 'CSS0007487' => 'camsi', 'CSS0008066' => 'camsi', 'CSS0009120' => 'camsi', 'CSS0015512' => 'camsi', 'CSS0022409' => 'camsi', 'CSS0025358' => 'camsi', 'CSS0044547' => 'camsi', 'DCAR_013057' => 'dca', 'DCAR_015058' => 'dca', 'DCAR_016027' => 'dca', 'DCAR_017327' => 'dca', 'DCAR_020743' => 'dca', 'DCAR_026157' => 'dca', 'DCAR_032339' => 'dca', 'DCAR_032340' => 'dca', 'Dinv11200' => 'din', 'Dinv11201' => 'din', 'Dinv20631' => 'din', 'Dinv23182' => 'din', 'Dinv33466' => 'din', 'Dinv33583' => 'din', 'Dinv38565' => 'din', 'Duzib068G0200' => 'dzi', 'Duzib147G0132' => 'dzi', 'Duzib147G0635' => 'dzi', 'Duzib205G1670' => 'dzi', 'Duzib251G0606' => 'dzi', 'ECA232G3336' => 'eca', 'ECA232G3763' => 'eca', 'ECA232G4845' => 'eca', 'ECA234G1607' => 'eca', 'ECA246G0932' => 'eca', 'ECA247G0781' => 'eca', 'ECA247G1932' => 'eca', 'ECA247G2079' => 'eca', 'ECA247G3338' => 'eca', 'ECA247G4115' => 'eca', 'EL10Ac3g06552' => 'bvu', 'EL10Ac5g10721' => 'bvu', 'EL10Ac5g10722' => 'bvu', 'EL10Ac5g10723' => 'bvu', 'EL10Ac5g11361' => 'bvu', 'EL10Ac6g13553' => 'bvu', 'EL10As8g23872' => 'bvu', 'Eucgr.B00250' => 'egr', 'Eucgr.B00251' => 'egr', 'Eucgr.B03533' => 'egr', 'Eucgr.I02381' => 'egr', 'Eucgr.K02700' => 'egr', 'FAN02G0174' => 'fan', 'FAN02G3146' => 'fan', 'FAN04G1672' => 'fan', 'FAN04G2273' => 'fan', 'FAN05G2791' => 'fan', 'FAN05G4035' => 'fan', 'FAN07G0834' => 'fan', 'FAN08G1198' => 'fan', 'FAN09G4182' => 'fan', 'FAN12G0496' => 'fan', 'FAN13G1027' => 'fan', 'FAN13G2951' => 'fan', 'FAN14G0705' => 'fan', 'FAN14G0720' => 'fan', 'FAN17G0201' => 'fan', 'FAN17G2665' => 'fan', 'FAN18G1456' => 'fan', 'FAN18G1525' => 'fan', 'FAN18G3500' => 'fan', 'FAN28G2670' => 'fan', 'FvH4_1g12391' => 'fve', 'FvH4_4g23220' => 'fve', 'FvH4_5g08810' => 'fve', 'FvH4_5g28960' => 'fve', 'FvH4_6g42820' => 'fve', 'FvH4_6g51110' => 'fve', 'Glyma.02G051802' => 'gma', 'Glyma.04G185300' => 'gma', 'Glyma.05G202900' => 'gma', 'Glyma.08G010300' => 'gma', 'Glyma.16G131900' => 'gma', 'Glyma.17G087900' => 'gma', 'Gohir.A07G048600' => 'ghi', 'Gohir.A11G179000' => 'ghi', 'Gohir.A12G140900' => 'ghi', 'Gohir.A12G140950' => 'ghi', 'Gohir.A12G191700' => 'ghi', 'Gohir.A13G086300' => 'ghi', 'Gohir.D07G052900' => 'ghi', 'Gohir.D11G186600' => 'ghi', 'Gohir.D12G145575' => 'ghi', 'Gohir.D12G145650' => 'ghi', 'Gohir.D12G145725' => 'ghi', 'Gohir.D12G194050' => 'ghi', 'Gohir.D13G091800' => 'ghi', 'Gorai.001G055900' => 'gra', 'Gorai.007G198400' => 'gra', 'Gorai.008G157000' => 'gra', 'Gorai.008G157100' => 'gra', 'Gorai.008G208700' => 'gra', 'Gorai.010G138700' => 'gra', 'GSVIVG01000977001' => 'vvi', 'GSVIVG01007708001' => 'vvi', 'GSVIVG01008587001' => 'vvi', 'GSVIVG01018849001' => 'vvi', 'GSVIVG01032432001' => 'vvi', 'HanXRQChr02g0034131' => 'han', 'HanXRQChr02g0035981' => 'han', 'HanXRQChr02g0035991' => 'han', 'HanXRQChr05g0155611' => 'han', 'HanXRQChr05g0155621' => 'han', 'HanXRQChr08g0236501' => 'han', 'HanXRQChr09g0261321' => 'han', 'HanXRQChr09g0272081' => 'han', 'HanXRQChr10g0310741' => 'han', 'HanXRQChr11g0325591' => 'han', 'HanXRQChr12g0385691' => 'han', 'HanXRQChr13g0387801' => 'han', 'HanXRQChr15g0463011' => 'han', 'Haze_03826' => 'cav', 'Haze_03827' => 'cav', 'Haze_07183' => 'cav', 'Haze_07537' => 'cav', 'Haze_07539' => 'cav', 'Haze_12461' => 'cav', 'Haze_16115' => 'cav', 'Haze_16808' => 'cav', 'Haze_18531' => 'cav', 'Hma1.2p1_0046F.1_g026700' => 'hma', 'Hma1.2p1_0046F.1_g026710' => 'hma', 'Hma1.2p1_0168F.1_g074340' => 'hma', 'Hma1.2p1_0266F.1_g107030' => 'hma', 'Hma1.2p1_0266F.1_g107060' => 'hma', 'Hma1.2p1_0275F.1_g110510' => 'hma', 'Hma1.2p1_0592F.1_g185490' => 'hma', 'Hma1.2p1_0592F.1_g185500' => 'hma', 'Hma1.2p1_0592F.1_g185510' => 'hma', 'Hma1.2p1_0592F.1_g185520' => 'hma', 'Hma1.2p1_0592F.1_g185530' => 'hma', 'Hma1.2p1_0818F.1_g223450' => 'hma', 'HPP92_009708' => 'vpl', 'HPP92_009793' => 'vpl', 'HPP92_009796' => 'vpl', 'HPP92_009797' => 'vpl', 'HPP92_014940' => 'vpl', 'HPP92_014988' => 'vpl', 'Hund02463' => 'sun', 'Hund02760' => 'sun', 'Hund05071' => 'sun', 'Hund10108' => 'sun', 'Hund11204' => 'sun', 'Hund14016' => 'sun', 'Hund16464' => 'sun', 'Lalb_Chr09g0333391' => 'lal', 'Lalb_Chr11g0070461' => 'lal', 'Lalb_Chr12g0201671' => 'lal', 'Lalb_Chr13g0297161' => 'lal', 'Lj1g0002823' => 'lja', 'Lj3C1074T6' => 'lonja', 'Lj4A212T28' => 'lonja', 'Lj4g0005516' => 'lja', 'Lj4g0013705' => 'lja', 'Lj4g0027865' => 'lja', 'Lj5C92G16' => 'lonja', 'Lj5C92T12' => 'lonja', 'Lj7C596T3' => 'lonja', 'Lj9A446G59' => 'lonja', 'Lj9A482G21' => 'lonja', 'Lsat_1_v5_gn_1_28261' => 'lsa', 'Lsat_1_v5_gn_1_28281' => 'lsa', 'Lsat_1_v5_gn_1_32721' => 'lsa', 'Lsat_1_v5_gn_4_151760' => 'lsa', 'Lsat_1_v5_gn_4_2120' => 'lsa', 'Lsat_1_v5_gn_4_75761' => 'lsa', 'Lsat_1_v5_gn_5_10920' => 'lsa', 'Manes.02G099900' => 'mes', 'Manes.11G096200' => 'mes', 'Manes.12G007200' => 'mes', 'Manes.14G048300' => 'mes', 'Manes.17G114700' => 'mes', 'Mapoly0002s0070' => 'mpo', 'Mapoly0029s0099' => 'mpo', 'MBI07_g24742_MAGBIO' => 'mbi', 'MBI10_g27988_MAGBIO' => 'mbi', 'MBI11_g13057_MAGBIO' => 'mbi', 'MD02G1137200' => 'mdo', 'MD06G1137200' => 'mdo', 'MD07G1122300' => 'mdo', 'MD09G1078200' => 'mdo', 'MD13G1123700' => 'mdo', 'MD14G1151900' => 'mdo', 'MD17G1030900' => 'mdo', 'MD17G1068200' => 'mdo', 'MD17G1068600' => 'mdo', 'Medtr3g077540' => 'mtr', 'Medtr4g105530' => 'mtr', 'Medtr8g076580' => 'mtr', 'Medtr8g076590' => 'mtr', 'Medtr8g096410' => 'mtr', 'MELO3C016411.2' => 'cme', 'MELO3C017780.2' => 'cme', 'MELO3C022560.2' => 'cme', 'MELO3C026187.2' => 'cme', 'MELO3C026286.2' => 'cme', 'MELO3C032854.2' => 'cme', 'Migut.H02495' => 'egut', 'Migut.I00561' => 'egut', 'Migut.K01015' => 'egut', 'Migut.K01016' => 'egut', 'Migut.L00743' => 'egut', 'Migut.L00744' => 'egut', 'Migut.L00746' => 'egut', 'Migut.L00798' => 'egut', 'Migut.L00799' => 'egut', 'Migut.N02096' => 'egut', 'MSTRG.11259' => 'ama', 'MSTRG.23142' => 'ama', 'MSTRG.2499' => 'ama', 'Nitab4.5_0000003g0730' => 'nta', 'Nitab4.5_0000137g0020' => 'nta', 'Nitab4.5_0000721g0210' => 'nta', 'Nitab4.5_0000723g0050' => 'nta', 'Nitab4.5_0000913g0070' => 'nta', 'Nitab4.5_0001332g0040' => 'nta', 'Nitab4.5_0001771g0050' => 'nta', 'Nitab4.5_0001918g0050' => 'nta', 'Nitab4.5_0002686g0030' => 'nta', 'Nitab4.5_0003156g0020' => 'nta', 'Nitab4.5_0003383g0040' => 'nta', 'Nitab4.5_0003918g0010' => 'nta', 'Nitab4.5_0006760g0010' => 'nta', 'Nn1g05981' => 'nnu', 'Nn1g06288' => 'nnu', 'Nn3g16371' => 'nnu', 'Nn3g16786' => 'nnu', 'Nn4g22232' => 'nnu', 'Oeu005144.1' => 'oeu', 'Oeu005145.1' => 'oeu', 'Oeu011348.1' => 'oeu', 'Oeu016415.1' => 'oeu', 'Oeu023501.1' => 'oeu', 'Oeu044473.1' => 'oeu', 'Oeu048892.2' => 'oeu', 'Os01g0549200' => 'osa', 'Os02g0469300' => 'osa', 'Os04g0311100' => 'osa', 'Os06g0474900' => 'osa', 'Os10g0181700' => 'osa', 'Os11g0454800' => 'osa', 'Peaxi162Scf00037g00714' => 'pax', 'Peaxi162Scf00084g01217' => 'pax', 'Peaxi162Scf00257g00217' => 'pax', 'Peaxi162Scf00516g00215' => 'pax', 'Peaxi162Scf00689g00123' => 'pax', 'PGR044G2719' => 'pgr', 'PGR083G1360' => 'pgr', 'PGR102G2849' => 'pgr', 'PGR119G2534' => 'pgr', 'PGSC0003DMG400003538' => 'stu', 'PGSC0003DMG400028138' => 'stu', 'PGSC0003DMG400031732' => 'stu', 'PGSC0003DMG400038165' => 'stu', 'Phvul.002G284600' => 'pvu', 'Phvul.003G258200' => 'pvu', 'Phvul.009G176500' => 'pvu', 'Potri.003G167201' => 'ptr', 'Potri.005G118400' => 'ptr', 'Potri.012G089000' => 'ptr', 'Potri.012G102800' => 'ptr', 'Potri.015G079400' => 'ptr', 'Potri.015G100900' => 'ptr', 'Pp3c14_9810' => 'ppa', 'Pp3c15_10450' => 'ppa', 'Pp3c20_19150' => 'ppa', 'Pp3c23_12740' => 'ppa', 'Pp3c23_6310' => 'ppa', 'Pp3c24_3720' => 'ppa', 'Pp3c27_2580' => 'ppa', 'Pp3c9_8990' => 'ppa', 'PRCOL_00002854' => 'pco', 'Prupe.1G221200' => 'ppe', 'Prupe.3G289000' => 'ppe', 'Prupe.5G147000' => 'ppe', 'Prupe.6G157300' => 'ppe', 'Prupe.7G163400' => 'ppe', 'Psat0s2177g0040' => 'psa', 'Psat3g174760' => 'psa', 'Psat3g192160' => 'psa', 'Psat4g058520' => 'psa', 'Psat4g096840' => 'psa', 'Psat7g037320' => 'psa', 'PSO017G1274' => 'pso', 'PSO017G5166' => 'pso', 'PSO063G4558' => 'pso', 'PSO170G4458' => 'pso', 'PSO170G5005' => 'pso', 'PSO210G6156' => 'pso', 'PSO210G6635' => 'pso', 'PSO210G7397' => 'pso', 'PSO210G7700' => 'pso', 'PSO455G0035' => 'pso', 'PSO455G0180' => 'pso', 'PSO478G4515' => 'pso', 'PSO832G1305' => 'pso', 'PSO832G3489' => 'pso', 'QL02p075247' => 'qlo', 'QL03p051148' => 'qlo', 'QL05p010313' => 'qlo', 'QL06p034627' => 'qlo', 'QL10p001889' => 'qlo', 'QL10p010846' => 'qlo', 'RcHm_v2.0_Chr1g0350621' => 'rch', 'RcHm_v2.0_Chr1g0350641' => 'rch', 'RcHm_v2.0_Chr2g0092891' => 'rch', 'RcHm_v2.0_Chr2g0100251' => 'rch', 'RcHm_v2.0_Chr2g0158661' => 'rch', 'RcHm_v2.0_Chr2g0172741' => 'rch', 'RcHm_v2.0_Chr4g0429571' => 'rch', 'RcHm_v2.0_Chr5g0042471' => 'rch', 'RcHm_v2.0_Chr7g0189451' => 'rch', 'Rhsim08G0052000' => 'rsi', 'Rhsim08G0174400' => 'rsi', 'Rhsim08G0193200' => 'rsi', 'Rhsim10G0214800' => 'rsi', 'Rhsim10G0214900' => 'rsi', 'Rhsim10G0215000' => 'rsi', 'Rhsim12G0022900' => 'rsi', 'Rhsim12G0177500' => 'rsi', 'Rhsim12G0177700' => 'rsi', 'Sabra03G0122600' => 'sbr', 'Sabra05G0097400' => 'sbr', 'Sabra12G0064100' => 'sbr', 'Sabra15G0121300' => 'sbr', 'SalBow2G0642' => 'sbo', 'SalBow5G2667' => 'sbo', 'SalBow5G4873' => 'sbo', 'SalBow8G2395' => 'sbo', 'Sc03g0003290' => 'sci', 'Sc10g0010130' => 'sci', 'Sc22g0003650' => 'sci', 'Sed0001603' => 'sed', 'Sed0004259' => 'sed', 'Sed0006789' => 'sed', 'Sed0011838' => 'sed', 'Sed0012964' => 'sed', 'Sed0016383' => 'sed', 'Sed0019010' => 'sed', 'Sed0020188' => 'sed', 'SEGI_04702' => 'sgi', 'SEGI_17231' => 'sgi', 'SEGI_18877' => 'sgi', 'SEGI_25196' => 'sgi', 'SEGI_25515' => 'sgi', 'SEGI_28445' => 'sgi', 'SEGI_37452' => 'sgi', 'SGA_v2.0_scaffold188G40336' => 'sas', 'SGA_v2.0_scaffold228G43247' => 'sas', 'SGA_v2.0_scaffold280G46853' => 'sas', 'SGA_v2.0_scaffold34G13808' => 'sas', 'SGA_v2.0_scaffold40G15576' => 'sas', 'SGA_v2.0_scaffold611G53188' => 'sas', 'SGA_v2.0_scaffold78G25461' => 'sas', 'SGA_v2.0_scaffold90G27888' => 'sas', 'SHI08601' => 'shi', 'SHI08606' => 'shi', 'SHI17117' => 'shi', 'SHI17119' => 'shi', 'SMO118G0201' => 'smo', 'SMO169G0247' => 'smo', 'SMO176G0006' => 'smo', 'SMO176G0015' => 'smo', 'SMO202G0006' => 'smo', 'SMO240G0050' => 'smo', 'SMO286G0009' => 'smo', 'SMO338G0033' => 'smo', 'SMO356G0533' => 'smo', 'SMO364G0382' => 'smo', 'SMO367G0166' => 'smo', 'SMO367G1098' => 'smo', 'Solyc01g009920.3' => 'sly', 'Solyc01g099300.3' => 'sly', 'Solyc02g084700.3' => 'sly', 'Solyc03g097520.3' => 'sly', 'Solyc06g071580.3' => 'sly', 'Solyc10g081760.3' => 'sly', 'Sopen01g005480' => 'spe', 'Sopen01g042850' => 'spe', 'Sopen02g029370' => 'spe', 'Sopen03g028280' => 'spe', 'Sopen06g027870' => 'spe', 'Sopen10g032270' => 'spe', 'Sp5g18180' => 'spa', 'Sp6g12880' => 'spa', 'Sp6g30850' => 'spa', 'Sp7g22960' => 'spa', 'Sp7g34010' => 'spa', 'SpUn1326_0010' => 'spa', 'TAR371G0242' => 'tar', 'TAR622G0638' => 'tar', 'TAR628G1548' => 'tar', 'TAR629G1079' => 'tar', 'TAR629G3413' => 'tar', 'THA.LOC104804249' => 'tha', 'THA.LOC104808315' => 'tha', 'THA.LOC104809238' => 'tha', 'THA.LOC104825484' => 'tha', 'Thecc.01G025500' => 'tca', 'Thecc.03G015800' => 'tca', 'Thecc.03G018000' => 'tca', 'Thecc.03G134800' => 'tca', 'Thecc.04G014700' => 'tca', 'Thhalv10006991m.g' => 'esa', 'Thhalv10012707m.g' => 'esa', 'Thhalv10015739m.g' => 'esa', 'Thhalv10024553m.g' => 'esa', 'Thhalv10024673m.g' => 'esa', 'Thhalv10029187m.g' => 'esa', 'TPR.G12971' => 'tpr', 'TPR.G29396' => 'tpr', 'TPR.G33376' => 'tpr', 'TPR.G35508' => 'tpr', 'TPR.G35516' => 'tpr', 'TPR.G37317' => 'tpr', 'TPR.G37389' => 'tpr', 'TPR.G37523' => 'tpr', 'TPR.G559' => 'tpr', 'TWI14G0070' => 'twi', 'TWI14G0729' => 'twi', 'TWI18G0596' => 'twi', 'TWI39G0780' => 'twi', 'TWI39G0850' => 'twi', 'TWI73G1052' => 'twi', 'unitig_52.g17485' => 'ugi', 'unitig_61.g26355' => 'ugi', 'vmacro01040' => 'vma', 'vmacro16731' => 'vma', 'vmacro18270' => 'vma', 'vmacro19142' => 'vma', 'vmacro19407' => 'vma', 'vmacro19408' => 'vma', 'vmacro21899' => 'vma', 'vmacro21900' => 'vma', 'vmacro21901' => 'vma', 'VMungo0251G0490' => 'vmu', 'VMungo0251G1748' => 'vmu', 'VMungo1309G0421' => 'vmu', 'Zm00001eb086500' => 'zma', 'Zm00001eb150680' => 'zma', 'Zm00001eb162330' => 'zma', 'Zm00001eb203130' => 'zma', 'Zm00001eb369480' => 'zma', 'Zm00001eb382340' => 'zma', 'Zm00001eb416360' => 'zma' ), 'gf_id' => 'HOM05D000902', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000902' ), 'data_identifier' => 'HOM05D000902', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000902', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '663', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02470' => 'bna', 'A01p16260' => 'bna', 'A02p01680' => 'bna', 'A03p16600' => 'bna', 'A03p55660' => 'bna', 'A03p64160' => 'bna', 'A03p64170' => 'bna', 'A08p31900' => 'bna', 'A09p59530' => 'bna', 'A10p08230' => 'bna', 'A10p25090' => 'bna', 'Aa31LG3G7100' => 'aar', 'Aa31LG3G7110' => 'aar', 'Aa31LG6G13160' => 'aar', 'Aa31LG7G10770' => 'aar', 'Aa31LG7G3830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2723' => 'aag', 'Actinidia08045' => 'ach', 'Actinidia08888' => 'ach', 'Actinidia18333' => 'ach', 'Actinidia19334' => 'ach', 'Actinidia25552' => 'ach', 'Actinidia26089' => 'ach', 'Actinidia30615' => 'ach', 'Actinidia30616' => 'ach', 'Actinidia33083' => 'ach', 'Actinidia35762' => 'ach', 'Ah.02g110620' => 'amhyb', 'Ah.11g046390' => 'amhyb', 'AL1G31670' => 'aly', 'AL6G23730' => 'aly', 'AL7G14740' => 'aly', 'AL7G14750' => 'aly', 'AL7G14760' => 'aly', 'AL7G28220' => 'aly', 'AL8G24940' => 'aly', 'Aqoxy3G01665' => 'aox', 'Aqoxy3G02853' => 'aox', 'Aqoxy5G01513' => 'aox', 'Aqoxy5G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8SKA4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ75LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKDA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0LJZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7REX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZP4YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWX7I5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2QKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS0L9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPCD8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q161UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC7XCF' => 'arhy', 'AT1G19100' => 'ath', 'AT4G24970' => 'ath', 'AT4G36270' => 'ath', 'AT4G36280' => 'ath', 'AT4G36290' => 'ath', 'AT5G13130' => 'ath', 'AT5G50780' => 'ath', 'ATR0582G266' => 'atr', 'ATR0661G195' => 'atr', 'ATR1152G031' => 'atr', 'Atru.chr11.2382' => 'acertr', 'Atru.chr12.2337' => 'acertr', 'Atru.chr3.744' => 'acertr', 'Atru.chr6.1870' => 'acertr', 'Atru.chr9.2515' => 'acertr', 'AUR62004120' => 'cqu', 'AUR62005667' => 'cqu', 'AUR62007634' => 'cqu', 'AUR62008186' => 'cqu', 'AUR62008187' => 'cqu', 'AUR62008188' => 'cqu', 'AUR62027954' => 'cqu', 'AUR62028766' => 'cqu', 'AUR62028767' => 'cqu', 'AUR62028768' => 'cqu', 'AUR62028886' => 'cqu', 'AUR62029563' => 'cqu', 'AUR62038832' => 'cqu', 'BcaB01g04149' => 'bca', 'BcaB03g12940' => 'bca', 'BcaB03g13090' => 'bca', 'BcaB03g14466' => 'bca', 'BcaB05g24035' => 'bca', 'BcaC01g06050' => 'bca', 'BcaC04g19148' => 'bca', 'BcaC04g20761' => 'bca', 'BcaC06g32845' => 'bca', 'BcaC07g41274' => 'bca', 'BcaC09g50827' => 'bca', 'BcaNung00741' => 'bca', 'BcaNung00742' => 'bca', 'BcaNung01859' => 'bca', 'BcaNung03985' => 'bca', 'BcaNung03989' => 'bca', 'BcaNung05661' => 'bca', 'BolC1t00257H' => 'bol', 'BolC1t01956H' => 'bol', 'BolC2t06534H' => 'bol', 'BolC3t14334H' => 'bol', 'BolC5t30451H' => 'bol', 'BolC7t45880H' => 'bol', 'BolC7t46586H' => 'bol', 'BolC8t49301H' => 'bol', 'BolC8t51837H' => 'bol', 'BolC9t56822H' => 'bol', 'BolC9t59235H' => 'bol', 'BraA01t00234Z' => 'bra', 'BraA01t01563Z' => 'bra', 'BraA02t05147Z' => 'bra', 'BraA03t10947Z' => 'bra', 'BraA03t14633Z' => 'bra', 'BraA08t35112Z' => 'bra', 'BraA09t41330Z' => 'bra', 'BraA10t44570Z' => 'bra', 'C01p02670' => 'bna', 'C01p20260' => 'bna', 'C02p05890' => 'bna', 'C03p19530' => 'bna', 'C05p17470' => 'bna', 'C07p53900' => 'bna', 'C07p61630' => 'bna', 'C08p16800' => 'bna', 'C08p42810' => 'bna', 'C09p39480' => 'bna', 'C09p63980' => 'bna', 'CAN.G1001.7' => 'can', 'CAN.G1034.55' => 'can', 'CAN.G143.7' => 'can', 'CAN.G3340.1' => 'can', 'CAN.G358.19' => 'can', 'CAN.G373.2' => 'can', 'CAN.G674.16' => 'can', 'CAN.G674.17' => 'can', 'CAN.G674.18' => 'can', 'CAN.G732.2' => 'can', 'CAN.G732.3' => 'can', 'CAN.G993.39' => 'can', 'CANSAT01G2052' => 'cansat', 'CANSAT80G0070' => 'cansat', 'CANSAT80G0483' => 'cansat', 'CANSAT80G0625' => 'cansat', 'CARHR019690' => 'chi', 'CARHR080280' => 'chi', 'CARHR152750' => 'chi', 'CARHR152760' => 'chi', 'CARHR152770' => 'chi', 'CARHR200340' => 'chi', 'CARHR232370' => 'chi', 'CARHR244670' => 'chi', 'CARHR244680' => 'chi', 'CARHR257520' => 'chi', 'Carub.0001s1872' => 'cru', 'Carub.0006s1130' => 'cru', 'Carub.0007s0396' => 'cru', 'Carub.0007s0397' => 'cru', 'Carub.0007s1608' => 'cru', 'Carub.0008s1068' => 'cru', 'Carub.0008s1077' => 'cru', 'Ca_16158_v3' => 'car', 'Ca_17571_v3' => 'car', 'Ca_21936_v3' => 'car', 'Ca_22350_v3' => 'car', 'CBR_g22445' => 'cbr', 'CBR_g26290' => 'cbr', 'Cc04_g09610' => 'ccan', 'Cc04_g12280' => 'ccan', 'Cc07_g10230' => 'ccan', 'CDE02G0093' => 'cde', 'CDE02G0701' => 'cde', 'CDE04G1050' => 'cde', 'CDE05G1833' => 'cde', 'CDE05G3058' => 'cde', 'CDE05G3380' => 'cde', 'CDE06G0536' => 'cde', 'Cfa006923' => 'cfa', 'Cfa009402' => 'cfa', 'Cfa018751' => 'cfa', 'Cfa019164' => 'cfa', 'Cfa022935' => 'cfa', 'Ciclev10019081m.g' => 'ccl', 'Ciclev10025076m.g' => 'ccl', 'Ciclev10030712m.g' => 'ccl', 'Ciclev10033760m.g' => 'ccl', 'CiPaw.05G105600' => 'cil', 'CiPaw.08G136700' => 'cil', 'CiPaw.11G003900' => 'cil', 'CiPaw.11G023700' => 'cil', 'CiPaw.12G003700' => 'cil', 'ClCG06G017100' => 'cla', 'ClCG06G018110' => 'cla', 'ClCG07G008800' => 'cla', 'ClCG07G015330' => 'cla', 'COL.COLO4_13698' => 'col', 'COL.COLO4_16659' => 'col', 'COL.COLO4_21986' => 'col', 'COL.COLO4_24049' => 'col', 'COL.COLO4_29061' => 'col', 'COL.COLO4_29075' => 'col', 'COL.COLO4_30094' => 'col', 'Cpa.g.c33689' => 'cpa', 'Cpa.g.sc108.39' => 'cpa', 'Cpa.g.sc108.41' => 'cpa', 'Cpa.g.sc1163.1' => 'cpa', 'Cpa.g.sc4.155' => 'cpa', 'Cpa.g.sc6.194' => 'cpa', 'CsaV3_1G000340' => 'csa', 'CsaV3_1G001400' => 'csa', 'CsaV3_4G002220' => 'csa', 'CsaV3_4G005370' => 'csa', 'CSS0007487' => 'camsi', 'CSS0008066' => 'camsi', 'CSS0009120' => 'camsi', 'CSS0015512' => 'camsi', 'CSS0022409' => 'camsi', 'CSS0025358' => 'camsi', 'CSS0044547' => 'camsi', 'DCAR_013057' => 'dca', 'DCAR_015058' => 'dca', 'DCAR_016027' => 'dca', 'DCAR_017327' => 'dca', 'DCAR_020743' => 'dca', 'DCAR_026157' => 'dca', 'DCAR_032339' => 'dca', 'DCAR_032340' => 'dca', 'Dinv11200' => 'din', 'Dinv11201' => 'din', 'Dinv20631' => 'din', 'Dinv23182' => 'din', 'Dinv33466' => 'din', 'Dinv33583' => 'din', 'Dinv38565' => 'din', 'Duzib068G0200' => 'dzi', 'Duzib147G0132' => 'dzi', 'Duzib147G0635' => 'dzi', 'Duzib205G1670' => 'dzi', 'Duzib251G0606' => 'dzi', 'ECA232G3336' => 'eca', 'ECA232G3763' => 'eca', 'ECA232G4845' => 'eca', 'ECA234G1607' => 'eca', 'ECA246G0932' => 'eca', 'ECA247G0781' => 'eca', 'ECA247G1932' => 'eca', 'ECA247G2079' => 'eca', 'ECA247G3338' => 'eca', 'ECA247G4115' => 'eca', 'EL10Ac3g06552' => 'bvu', 'EL10Ac5g10721' => 'bvu', 'EL10Ac5g10722' => 'bvu', 'EL10Ac5g10723' => 'bvu', 'EL10Ac5g11361' => 'bvu', 'EL10Ac6g13553' => 'bvu', 'EL10As8g23872' => 'bvu', 'Eucgr.B00250' => 'egr', 'Eucgr.B00251' => 'egr', 'Eucgr.B03533' => 'egr', 'Eucgr.I02381' => 'egr', 'Eucgr.K02700' => 'egr', 'FAN02G0174' => 'fan', 'FAN02G3146' => 'fan', 'FAN04G1672' => 'fan', 'FAN04G2273' => 'fan', 'FAN05G2791' => 'fan', 'FAN05G4035' => 'fan', 'FAN07G0834' => 'fan', 'FAN08G1198' => 'fan', 'FAN09G4182' => 'fan', 'FAN12G0496' => 'fan', 'FAN13G1027' => 'fan', 'FAN13G2951' => 'fan', 'FAN14G0705' => 'fan', 'FAN14G0720' => 'fan', 'FAN17G0201' => 'fan', 'FAN17G2665' => 'fan', 'FAN18G1456' => 'fan', 'FAN18G1525' => 'fan', 'FAN18G3500' => 'fan', 'FAN28G2670' => 'fan', 'FvH4_1g12391' => 'fve', 'FvH4_4g23220' => 'fve', 'FvH4_5g08810' => 'fve', 'FvH4_5g28960' => 'fve', 'FvH4_6g42820' => 'fve', 'FvH4_6g51110' => 'fve', 'Glyma.02G051802' => 'gma', 'Glyma.04G185300' => 'gma', 'Glyma.05G202900' => 'gma', 'Glyma.08G010300' => 'gma', 'Glyma.16G131900' => 'gma', 'Glyma.17G087900' => 'gma', 'Gohir.A07G048600' => 'ghi', 'Gohir.A11G179000' => 'ghi', 'Gohir.A12G140900' => 'ghi', 'Gohir.A12G140950' => 'ghi', 'Gohir.A12G191700' => 'ghi', 'Gohir.A13G086300' => 'ghi', 'Gohir.D07G052900' => 'ghi', 'Gohir.D11G186600' => 'ghi', 'Gohir.D12G145575' => 'ghi', 'Gohir.D12G145650' => 'ghi', 'Gohir.D12G145725' => 'ghi', 'Gohir.D12G194050' => 'ghi', 'Gohir.D13G091800' => 'ghi', 'Gorai.001G055900' => 'gra', 'Gorai.007G198400' => 'gra', 'Gorai.008G157000' => 'gra', 'Gorai.008G157100' => 'gra', 'Gorai.008G208700' => 'gra', 'Gorai.010G138700' => 'gra', 'GSVIVG01000977001' => 'vvi', 'GSVIVG01007708001' => 'vvi', 'GSVIVG01008587001' => 'vvi', 'GSVIVG01018849001' => 'vvi', 'GSVIVG01032432001' => 'vvi', 'HanXRQChr02g0034131' => 'han', 'HanXRQChr02g0035981' => 'han', 'HanXRQChr02g0035991' => 'han', 'HanXRQChr05g0155611' => 'han', 'HanXRQChr05g0155621' => 'han', 'HanXRQChr08g0236501' => 'han', 'HanXRQChr09g0261321' => 'han', 'HanXRQChr09g0272081' => 'han', 'HanXRQChr10g0310741' => 'han', 'HanXRQChr11g0325591' => 'han', 'HanXRQChr12g0385691' => 'han', 'HanXRQChr13g0387801' => 'han', 'HanXRQChr15g0463011' => 'han', 'Haze_03826' => 'cav', 'Haze_03827' => 'cav', 'Haze_07183' => 'cav', 'Haze_07537' => 'cav', 'Haze_07539' => 'cav', 'Haze_12461' => 'cav', 'Haze_16115' => 'cav', 'Haze_16808' => 'cav', 'Haze_18531' => 'cav', 'Hma1.2p1_0046F.1_g026700' => 'hma', 'Hma1.2p1_0046F.1_g026710' => 'hma', 'Hma1.2p1_0168F.1_g074340' => 'hma', 'Hma1.2p1_0266F.1_g107030' => 'hma', 'Hma1.2p1_0266F.1_g107060' => 'hma', 'Hma1.2p1_0275F.1_g110510' => 'hma', 'Hma1.2p1_0592F.1_g185490' => 'hma', 'Hma1.2p1_0592F.1_g185500' => 'hma', 'Hma1.2p1_0592F.1_g185510' => 'hma', 'Hma1.2p1_0592F.1_g185520' => 'hma', 'Hma1.2p1_0592F.1_g185530' => 'hma', 'Hma1.2p1_0818F.1_g223450' => 'hma', 'HPP92_009708' => 'vpl', 'HPP92_009793' => 'vpl', 'HPP92_009796' => 'vpl', 'HPP92_009797' => 'vpl', 'HPP92_014940' => 'vpl', 'HPP92_014988' => 'vpl', 'Hund02463' => 'sun', 'Hund02760' => 'sun', 'Hund05071' => 'sun', 'Hund10108' => 'sun', 'Hund11204' => 'sun', 'Hund14016' => 'sun', 'Hund16464' => 'sun', 'Lalb_Chr09g0333391' => 'lal', 'Lalb_Chr11g0070461' => 'lal', 'Lalb_Chr12g0201671' => 'lal', 'Lalb_Chr13g0297161' => 'lal', 'Lj1g0002823' => 'lja', 'Lj3C1074T6' => 'lonja', 'Lj4A212T28' => 'lonja', 'Lj4g0005516' => 'lja', 'Lj4g0013705' => 'lja', 'Lj4g0027865' => 'lja', 'Lj5C92G16' => 'lonja', 'Lj5C92T12' => 'lonja', 'Lj7C596T3' => 'lonja', 'Lj9A446G59' => 'lonja', 'Lj9A482G21' => 'lonja', 'Lsat_1_v5_gn_1_28261' => 'lsa', 'Lsat_1_v5_gn_1_28281' => 'lsa', 'Lsat_1_v5_gn_1_32721' => 'lsa', 'Lsat_1_v5_gn_4_151760' => 'lsa', 'Lsat_1_v5_gn_4_2120' => 'lsa', 'Lsat_1_v5_gn_4_75761' => 'lsa', 'Lsat_1_v5_gn_5_10920' => 'lsa', 'Manes.02G099900' => 'mes', 'Manes.11G096200' => 'mes', 'Manes.12G007200' => 'mes', 'Manes.14G048300' => 'mes', 'Manes.17G114700' => 'mes', 'Mapoly0002s0070' => 'mpo', 'Mapoly0029s0099' => 'mpo', 'MBI07_g24742_MAGBIO' => 'mbi', 'MBI10_g27988_MAGBIO' => 'mbi', 'MBI11_g13057_MAGBIO' => 'mbi', 'MD02G1137200' => 'mdo', 'MD06G1137200' => 'mdo', 'MD07G1122300' => 'mdo', 'MD09G1078200' => 'mdo', 'MD13G1123700' => 'mdo', 'MD14G1151900' => 'mdo', 'MD17G1030900' => 'mdo', 'MD17G1068200' => 'mdo', 'MD17G1068600' => 'mdo', 'Medtr3g077540' => 'mtr', 'Medtr4g105530' => 'mtr', 'Medtr8g076580' => 'mtr', 'Medtr8g076590' => 'mtr', 'Medtr8g096410' => 'mtr', 'MELO3C016411.2' => 'cme', 'MELO3C017780.2' => 'cme', 'MELO3C022560.2' => 'cme', 'MELO3C026187.2' => 'cme', 'MELO3C026286.2' => 'cme', 'MELO3C032854.2' => 'cme', 'Migut.H02495' => 'egut', 'Migut.I00561' => 'egut', 'Migut.K01015' => 'egut', 'Migut.K01016' => 'egut', 'Migut.L00743' => 'egut', 'Migut.L00744' => 'egut', 'Migut.L00746' => 'egut', 'Migut.L00798' => 'egut', 'Migut.L00799' => 'egut', 'Migut.N02096' => 'egut', 'MSTRG.11259' => 'ama', 'MSTRG.23142' => 'ama', 'MSTRG.2499' => 'ama', 'Nitab4.5_0000003g0730' => 'nta', 'Nitab4.5_0000137g0020' => 'nta', 'Nitab4.5_0000721g0210' => 'nta', 'Nitab4.5_0000723g0050' => 'nta', 'Nitab4.5_0000913g0070' => 'nta', 'Nitab4.5_0001332g0040' => 'nta', 'Nitab4.5_0001771g0050' => 'nta', 'Nitab4.5_0001918g0050' => 'nta', 'Nitab4.5_0002686g0030' => 'nta', 'Nitab4.5_0003156g0020' => 'nta', 'Nitab4.5_0003383g0040' => 'nta', 'Nitab4.5_0003918g0010' => 'nta', 'Nitab4.5_0006760g0010' => 'nta', 'Nn1g05981' => 'nnu', 'Nn1g06288' => 'nnu', 'Nn3g16371' => 'nnu', 'Nn3g16786' => 'nnu', 'Nn4g22232' => 'nnu', 'Oeu005144.1' => 'oeu', 'Oeu005145.1' => 'oeu', 'Oeu011348.1' => 'oeu', 'Oeu016415.1' => 'oeu', 'Oeu023501.1' => 'oeu', 'Oeu044473.1' => 'oeu', 'Oeu048892.2' => 'oeu', 'Os01g0549200' => 'osa', 'Os02g0469300' => 'osa', 'Os04g0311100' => 'osa', 'Os06g0474900' => 'osa', 'Os10g0181700' => 'osa', 'Os11g0454800' => 'osa', 'Peaxi162Scf00037g00714' => 'pax', 'Peaxi162Scf00084g01217' => 'pax', 'Peaxi162Scf00257g00217' => 'pax', 'Peaxi162Scf00516g00215' => 'pax', 'Peaxi162Scf00689g00123' => 'pax', 'PGR044G2719' => 'pgr', 'PGR083G1360' => 'pgr', 'PGR102G2849' => 'pgr', 'PGR119G2534' => 'pgr', 'PGSC0003DMG400003538' => 'stu', 'PGSC0003DMG400028138' => 'stu', 'PGSC0003DMG400031732' => 'stu', 'PGSC0003DMG400038165' => 'stu', 'Phvul.002G284600' => 'pvu', 'Phvul.003G258200' => 'pvu', 'Phvul.009G176500' => 'pvu', 'Potri.003G167201' => 'ptr', 'Potri.005G118400' => 'ptr', 'Potri.012G089000' => 'ptr', 'Potri.012G102800' => 'ptr', 'Potri.015G079400' => 'ptr', 'Potri.015G100900' => 'ptr', 'Pp3c14_9810' => 'ppa', 'Pp3c15_10450' => 'ppa', 'Pp3c20_19150' => 'ppa', 'Pp3c23_12740' => 'ppa', 'Pp3c23_6310' => 'ppa', 'Pp3c24_3720' => 'ppa', 'Pp3c27_2580' => 'ppa', 'Pp3c9_8990' => 'ppa', 'PRCOL_00002854' => 'pco', 'Prupe.1G221200' => 'ppe', 'Prupe.3G289000' => 'ppe', 'Prupe.5G147000' => 'ppe', 'Prupe.6G157300' => 'ppe', 'Prupe.7G163400' => 'ppe', 'Psat0s2177g0040' => 'psa', 'Psat3g174760' => 'psa', 'Psat3g192160' => 'psa', 'Psat4g058520' => 'psa', 'Psat4g096840' => 'psa', 'Psat7g037320' => 'psa', 'PSO017G1274' => 'pso', 'PSO017G5166' => 'pso', 'PSO063G4558' => 'pso', 'PSO170G4458' => 'pso', 'PSO170G5005' => 'pso', 'PSO210G6156' => 'pso', 'PSO210G6635' => 'pso', 'PSO210G7397' => 'pso', 'PSO210G7700' => 'pso', 'PSO455G0035' => 'pso', 'PSO455G0180' => 'pso', 'PSO478G4515' => 'pso', 'PSO832G1305' => 'pso', 'PSO832G3489' => 'pso', 'QL02p075247' => 'qlo', 'QL03p051148' => 'qlo', 'QL05p010313' => 'qlo', 'QL06p034627' => 'qlo', 'QL10p001889' => 'qlo', 'QL10p010846' => 'qlo', 'RcHm_v2.0_Chr1g0350621' => 'rch', 'RcHm_v2.0_Chr1g0350641' => 'rch', 'RcHm_v2.0_Chr2g0092891' => 'rch', 'RcHm_v2.0_Chr2g0100251' => 'rch', 'RcHm_v2.0_Chr2g0158661' => 'rch', 'RcHm_v2.0_Chr2g0172741' => 'rch', 'RcHm_v2.0_Chr4g0429571' => 'rch', 'RcHm_v2.0_Chr5g0042471' => 'rch', 'RcHm_v2.0_Chr7g0189451' => 'rch', 'Rhsim08G0052000' => 'rsi', 'Rhsim08G0174400' => 'rsi', 'Rhsim08G0193200' => 'rsi', 'Rhsim10G0214800' => 'rsi', 'Rhsim10G0214900' => 'rsi', 'Rhsim10G0215000' => 'rsi', 'Rhsim12G0022900' => 'rsi', 'Rhsim12G0177500' => 'rsi', 'Rhsim12G0177700' => 'rsi', 'Sabra03G0122600' => 'sbr', 'Sabra05G0097400' => 'sbr', 'Sabra12G0064100' => 'sbr', 'Sabra15G0121300' => 'sbr', 'SalBow2G0642' => 'sbo', 'SalBow5G2667' => 'sbo', 'SalBow5G4873' => 'sbo', 'SalBow8G2395' => 'sbo', 'Sc03g0003290' => 'sci', 'Sc10g0010130' => 'sci', 'Sc22g0003650' => 'sci', 'Sed0001603' => 'sed', 'Sed0004259' => 'sed', 'Sed0006789' => 'sed', 'Sed0011838' => 'sed', 'Sed0012964' => 'sed', 'Sed0016383' => 'sed', 'Sed0019010' => 'sed', 'Sed0020188' => 'sed', 'SEGI_04702' => 'sgi', 'SEGI_17231' => 'sgi', 'SEGI_18877' => 'sgi', 'SEGI_25196' => 'sgi', 'SEGI_25515' => 'sgi', 'SEGI_28445' => 'sgi', 'SEGI_37452' => 'sgi', 'SGA_v2.0_scaffold188G40336' => 'sas', 'SGA_v2.0_scaffold228G43247' => 'sas', 'SGA_v2.0_scaffold280G46853' => 'sas', 'SGA_v2.0_scaffold34G13808' => 'sas', 'SGA_v2.0_scaffold40G15576' => 'sas', 'SGA_v2.0_scaffold611G53188' => 'sas', 'SGA_v2.0_scaffold78G25461' => 'sas', 'SGA_v2.0_scaffold90G27888' => 'sas', 'SHI08601' => 'shi', 'SHI08606' => 'shi', 'SHI17117' => 'shi', 'SHI17119' => 'shi', 'SMO118G0201' => 'smo', 'SMO169G0247' => 'smo', 'SMO176G0006' => 'smo', 'SMO176G0015' => 'smo', 'SMO202G0006' => 'smo', 'SMO240G0050' => 'smo', 'SMO286G0009' => 'smo', 'SMO338G0033' => 'smo', 'SMO356G0533' => 'smo', 'SMO364G0382' => 'smo', 'SMO367G0166' => 'smo', 'SMO367G1098' => 'smo', 'Solyc01g009920.3' => 'sly', 'Solyc01g099300.3' => 'sly', 'Solyc02g084700.3' => 'sly', 'Solyc03g097520.3' => 'sly', 'Solyc06g071580.3' => 'sly', 'Solyc10g081760.3' => 'sly', 'Sopen01g005480' => 'spe', 'Sopen01g042850' => 'spe', 'Sopen02g029370' => 'spe', 'Sopen03g028280' => 'spe', 'Sopen06g027870' => 'spe', 'Sopen10g032270' => 'spe', 'Sp5g18180' => 'spa', 'Sp6g12880' => 'spa', 'Sp6g30850' => 'spa', 'Sp7g22960' => 'spa', 'Sp7g34010' => 'spa', 'SpUn1326_0010' => 'spa', 'TAR371G0242' => 'tar', 'TAR622G0638' => 'tar', 'TAR628G1548' => 'tar', 'TAR629G1079' => 'tar', 'TAR629G3413' => 'tar', 'THA.LOC104804249' => 'tha', 'THA.LOC104808315' => 'tha', 'THA.LOC104809238' => 'tha', 'THA.LOC104825484' => 'tha', 'Thecc.01G025500' => 'tca', 'Thecc.03G015800' => 'tca', 'Thecc.03G018000' => 'tca', 'Thecc.03G134800' => 'tca', 'Thecc.04G014700' => 'tca', 'Thhalv10006991m.g' => 'esa', 'Thhalv10012707m.g' => 'esa', 'Thhalv10015739m.g' => 'esa', 'Thhalv10024553m.g' => 'esa', 'Thhalv10024673m.g' => 'esa', 'Thhalv10029187m.g' => 'esa', 'TPR.G12971' => 'tpr', 'TPR.G29396' => 'tpr', 'TPR.G33376' => 'tpr', 'TPR.G35508' => 'tpr', 'TPR.G35516' => 'tpr', 'TPR.G37317' => 'tpr', 'TPR.G37389' => 'tpr', 'TPR.G37523' => 'tpr', 'TPR.G559' => 'tpr', 'TWI14G0070' => 'twi', 'TWI14G0729' => 'twi', 'TWI18G0596' => 'twi', 'TWI39G0780' => 'twi', 'TWI39G0850' => 'twi', 'TWI73G1052' => 'twi', 'unitig_52.g17485' => 'ugi', 'unitig_61.g26355' => 'ugi', 'vmacro01040' => 'vma', 'vmacro16731' => 'vma', 'vmacro18270' => 'vma', 'vmacro19142' => 'vma', 'vmacro19407' => 'vma', 'vmacro19408' => 'vma', 'vmacro21899' => 'vma', 'vmacro21900' => 'vma', 'vmacro21901' => 'vma', 'VMungo0251G0490' => 'vmu', 'VMungo0251G1748' => 'vmu', 'VMungo1309G0421' => 'vmu', 'Zm00001eb086500' => 'zma', 'Zm00001eb150680' => 'zma', 'Zm00001eb162330' => 'zma', 'Zm00001eb203130' => 'zma', 'Zm00001eb369480' => 'zma', 'Zm00001eb382340' => 'zma', 'Zm00001eb416360' => 'zma' ) $gf_id = 'HOM05D000902' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000902' ) $data_identifier = 'HOM05D000902' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 13, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 10, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 6, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 9, 'hma' => (int) 12, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 4, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 6, 'ppa' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 6, 'rch' => (int) 9, 'rsi' => (int) 9, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 12, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 3, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416360' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000902', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '663', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02470' => 'bna', 'A01p16260' => 'bna', 'A02p01680' => 'bna', 'A03p16600' => 'bna', 'A03p55660' => 'bna', 'A03p64160' => 'bna', 'A03p64170' => 'bna', 'A08p31900' => 'bna', 'A09p59530' => 'bna', 'A10p08230' => 'bna', 'A10p25090' => 'bna', 'Aa31LG3G7100' => 'aar', 'Aa31LG3G7110' => 'aar', 'Aa31LG6G13160' => 'aar', 'Aa31LG7G10770' => 'aar', 'Aa31LG7G3830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2723' => 'aag', 'Actinidia08045' => 'ach', 'Actinidia08888' => 'ach', 'Actinidia18333' => 'ach', 'Actinidia19334' => 'ach', 'Actinidia25552' => 'ach', 'Actinidia26089' => 'ach', 'Actinidia30615' => 'ach', 'Actinidia30616' => 'ach', 'Actinidia33083' => 'ach', 'Actinidia35762' => 'ach', 'Ah.02g110620' => 'amhyb', 'Ah.11g046390' => 'amhyb', 'AL1G31670' => 'aly', 'AL6G23730' => 'aly', 'AL7G14740' => 'aly', 'AL7G14750' => 'aly', 'AL7G14760' => 'aly', 'AL7G28220' => 'aly', 'AL8G24940' => 'aly', 'Aqoxy3G01665' => 'aox', 'Aqoxy3G02853' => 'aox', 'Aqoxy5G01513' => 'aox', 'Aqoxy5G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8SKA4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ75LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKDA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0LJZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7REX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZP4YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWX7I5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2QKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS0L9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPCD8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q161UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC7XCF' => 'arhy', 'AT1G19100' => 'ath', 'AT4G24970' => 'ath', 'AT4G36270' => 'ath', 'AT4G36280' => 'ath', 'AT4G36290' => 'ath', 'AT5G13130' => 'ath', 'AT5G50780' => 'ath', 'ATR0582G266' => 'atr', 'ATR0661G195' => 'atr', 'ATR1152G031' => 'atr', 'Atru.chr11.2382' => 'acertr', 'Atru.chr12.2337' => 'acertr', 'Atru.chr3.744' => 'acertr', 'Atru.chr6.1870' => 'acertr', 'Atru.chr9.2515' => 'acertr', 'AUR62004120' => 'cqu', 'AUR62005667' => 'cqu', 'AUR62007634' => 'cqu', 'AUR62008186' => 'cqu', 'AUR62008187' => 'cqu', 'AUR62008188' => 'cqu', 'AUR62027954' => 'cqu', 'AUR62028766' => 'cqu', 'AUR62028767' => 'cqu', 'AUR62028768' => 'cqu', 'AUR62028886' => 'cqu', 'AUR62029563' => 'cqu', 'AUR62038832' => 'cqu', 'BcaB01g04149' => 'bca', 'BcaB03g12940' => 'bca', 'BcaB03g13090' => 'bca', 'BcaB03g14466' => 'bca', 'BcaB05g24035' => 'bca', 'BcaC01g06050' => 'bca', 'BcaC04g19148' => 'bca', 'BcaC04g20761' => 'bca', 'BcaC06g32845' => 'bca', 'BcaC07g41274' => 'bca', 'BcaC09g50827' => 'bca', 'BcaNung00741' => 'bca', 'BcaNung00742' => 'bca', 'BcaNung01859' => 'bca', 'BcaNung03985' => 'bca', 'BcaNung03989' => 'bca', 'BcaNung05661' => 'bca', 'BolC1t00257H' => 'bol', 'BolC1t01956H' => 'bol', 'BolC2t06534H' => 'bol', 'BolC3t14334H' => 'bol', 'BolC5t30451H' => 'bol', 'BolC7t45880H' => 'bol', 'BolC7t46586H' => 'bol', 'BolC8t49301H' => 'bol', 'BolC8t51837H' => 'bol', 'BolC9t56822H' => 'bol', 'BolC9t59235H' => 'bol', 'BraA01t00234Z' => 'bra', 'BraA01t01563Z' => 'bra', 'BraA02t05147Z' => 'bra', 'BraA03t10947Z' => 'bra', 'BraA03t14633Z' => 'bra', 'BraA08t35112Z' => 'bra', 'BraA09t41330Z' => 'bra', 'BraA10t44570Z' => 'bra', 'C01p02670' => 'bna', 'C01p20260' => 'bna', 'C02p05890' => 'bna', 'C03p19530' => 'bna', 'C05p17470' => 'bna', 'C07p53900' => 'bna', 'C07p61630' => 'bna', 'C08p16800' => 'bna', 'C08p42810' => 'bna', 'C09p39480' => 'bna', 'C09p63980' => 'bna', 'CAN.G1001.7' => 'can', 'CAN.G1034.55' => 'can', 'CAN.G143.7' => 'can', 'CAN.G3340.1' => 'can', 'CAN.G358.19' => 'can', 'CAN.G373.2' => 'can', 'CAN.G674.16' => 'can', 'CAN.G674.17' => 'can', 'CAN.G674.18' => 'can', 'CAN.G732.2' => 'can', 'CAN.G732.3' => 'can', 'CAN.G993.39' => 'can', 'CANSAT01G2052' => 'cansat', 'CANSAT80G0070' => 'cansat', 'CANSAT80G0483' => 'cansat', 'CANSAT80G0625' => 'cansat', 'CARHR019690' => 'chi', 'CARHR080280' => 'chi', 'CARHR152750' => 'chi', 'CARHR152760' => 'chi', 'CARHR152770' => 'chi', 'CARHR200340' => 'chi', 'CARHR232370' => 'chi', 'CARHR244670' => 'chi', 'CARHR244680' => 'chi', 'CARHR257520' => 'chi', 'Carub.0001s1872' => 'cru', 'Carub.0006s1130' => 'cru', 'Carub.0007s0396' => 'cru', 'Carub.0007s0397' => 'cru', 'Carub.0007s1608' => 'cru', 'Carub.0008s1068' => 'cru', 'Carub.0008s1077' => 'cru', 'Ca_16158_v3' => 'car', 'Ca_17571_v3' => 'car', 'Ca_21936_v3' => 'car', 'Ca_22350_v3' => 'car', 'CBR_g22445' => 'cbr', 'CBR_g26290' => 'cbr', 'Cc04_g09610' => 'ccan', 'Cc04_g12280' => 'ccan', 'Cc07_g10230' => 'ccan', 'CDE02G0093' => 'cde', 'CDE02G0701' => 'cde', 'CDE04G1050' => 'cde', 'CDE05G1833' => 'cde', 'CDE05G3058' => 'cde', 'CDE05G3380' => 'cde', 'CDE06G0536' => 'cde', 'Cfa006923' => 'cfa', 'Cfa009402' => 'cfa', 'Cfa018751' => 'cfa', 'Cfa019164' => 'cfa', 'Cfa022935' => 'cfa', 'Ciclev10019081m.g' => 'ccl', 'Ciclev10025076m.g' => 'ccl', 'Ciclev10030712m.g' => 'ccl', 'Ciclev10033760m.g' => 'ccl', 'CiPaw.05G105600' => 'cil', 'CiPaw.08G136700' => 'cil', 'CiPaw.11G003900' => 'cil', 'CiPaw.11G023700' => 'cil', 'CiPaw.12G003700' => 'cil', 'ClCG06G017100' => 'cla', 'ClCG06G018110' => 'cla', 'ClCG07G008800' => 'cla', 'ClCG07G015330' => 'cla', 'COL.COLO4_13698' => 'col', 'COL.COLO4_16659' => 'col', 'COL.COLO4_21986' => 'col', 'COL.COLO4_24049' => 'col', 'COL.COLO4_29061' => 'col', 'COL.COLO4_29075' => 'col', 'COL.COLO4_30094' => 'col', 'Cpa.g.c33689' => 'cpa', 'Cpa.g.sc108.39' => 'cpa', 'Cpa.g.sc108.41' => 'cpa', 'Cpa.g.sc1163.1' => 'cpa', 'Cpa.g.sc4.155' => 'cpa', 'Cpa.g.sc6.194' => 'cpa', 'CsaV3_1G000340' => 'csa', 'CsaV3_1G001400' => 'csa', 'CsaV3_4G002220' => 'csa', 'CsaV3_4G005370' => 'csa', 'CSS0007487' => 'camsi', 'CSS0008066' => 'camsi', 'CSS0009120' => 'camsi', 'CSS0015512' => 'camsi', 'CSS0022409' => 'camsi', 'CSS0025358' => 'camsi', 'CSS0044547' => 'camsi', 'DCAR_013057' => 'dca', 'DCAR_015058' => 'dca', 'DCAR_016027' => 'dca', 'DCAR_017327' => 'dca', 'DCAR_020743' => 'dca', 'DCAR_026157' => 'dca', 'DCAR_032339' => 'dca', 'DCAR_032340' => 'dca', 'Dinv11200' => 'din', 'Dinv11201' => 'din', 'Dinv20631' => 'din', 'Dinv23182' => 'din', 'Dinv33466' => 'din', 'Dinv33583' => 'din', 'Dinv38565' => 'din', 'Duzib068G0200' => 'dzi', 'Duzib147G0132' => 'dzi', 'Duzib147G0635' => 'dzi', 'Duzib205G1670' => 'dzi', 'Duzib251G0606' => 'dzi', 'ECA232G3336' => 'eca', 'ECA232G3763' => 'eca', 'ECA232G4845' => 'eca', 'ECA234G1607' => 'eca', 'ECA246G0932' => 'eca', 'ECA247G0781' => 'eca', 'ECA247G1932' => 'eca', 'ECA247G2079' => 'eca', 'ECA247G3338' => 'eca', 'ECA247G4115' => 'eca', 'EL10Ac3g06552' => 'bvu', 'EL10Ac5g10721' => 'bvu', 'EL10Ac5g10722' => 'bvu', 'EL10Ac5g10723' => 'bvu', 'EL10Ac5g11361' => 'bvu', 'EL10Ac6g13553' => 'bvu', 'EL10As8g23872' => 'bvu', 'Eucgr.B00250' => 'egr', 'Eucgr.B00251' => 'egr', 'Eucgr.B03533' => 'egr', 'Eucgr.I02381' => 'egr', 'Eucgr.K02700' => 'egr', 'FAN02G0174' => 'fan', 'FAN02G3146' => 'fan', 'FAN04G1672' => 'fan', 'FAN04G2273' => 'fan', 'FAN05G2791' => 'fan', 'FAN05G4035' => 'fan', 'FAN07G0834' => 'fan', 'FAN08G1198' => 'fan', 'FAN09G4182' => 'fan', 'FAN12G0496' => 'fan', 'FAN13G1027' => 'fan', 'FAN13G2951' => 'fan', 'FAN14G0705' => 'fan', 'FAN14G0720' => 'fan', 'FAN17G0201' => 'fan', 'FAN17G2665' => 'fan', 'FAN18G1456' => 'fan', 'FAN18G1525' => 'fan', 'FAN18G3500' => 'fan', 'FAN28G2670' => 'fan', 'FvH4_1g12391' => 'fve', 'FvH4_4g23220' => 'fve', 'FvH4_5g08810' => 'fve', 'FvH4_5g28960' => 'fve', 'FvH4_6g42820' => 'fve', 'FvH4_6g51110' => 'fve', 'Glyma.02G051802' => 'gma', 'Glyma.04G185300' => 'gma', 'Glyma.05G202900' => 'gma', 'Glyma.08G010300' => 'gma', 'Glyma.16G131900' => 'gma', 'Glyma.17G087900' => 'gma', 'Gohir.A07G048600' => 'ghi', 'Gohir.A11G179000' => 'ghi', 'Gohir.A12G140900' => 'ghi', 'Gohir.A12G140950' => 'ghi', 'Gohir.A12G191700' => 'ghi', 'Gohir.A13G086300' => 'ghi', 'Gohir.D07G052900' => 'ghi', 'Gohir.D11G186600' => 'ghi', 'Gohir.D12G145575' => 'ghi', 'Gohir.D12G145650' => 'ghi', 'Gohir.D12G145725' => 'ghi', 'Gohir.D12G194050' => 'ghi', 'Gohir.D13G091800' => 'ghi', 'Gorai.001G055900' => 'gra', 'Gorai.007G198400' => 'gra', 'Gorai.008G157000' => 'gra', 'Gorai.008G157100' => 'gra', 'Gorai.008G208700' => 'gra', 'Gorai.010G138700' => 'gra', 'GSVIVG01000977001' => 'vvi', 'GSVIVG01007708001' => 'vvi', 'GSVIVG01008587001' => 'vvi', 'GSVIVG01018849001' => 'vvi', 'GSVIVG01032432001' => 'vvi', 'HanXRQChr02g0034131' => 'han', 'HanXRQChr02g0035981' => 'han', 'HanXRQChr02g0035991' => 'han', 'HanXRQChr05g0155611' => 'han', 'HanXRQChr05g0155621' => 'han', 'HanXRQChr08g0236501' => 'han', 'HanXRQChr09g0261321' => 'han', 'HanXRQChr09g0272081' => 'han', 'HanXRQChr10g0310741' => 'han', 'HanXRQChr11g0325591' => 'han', 'HanXRQChr12g0385691' => 'han', 'HanXRQChr13g0387801' => 'han', 'HanXRQChr15g0463011' => 'han', 'Haze_03826' => 'cav', 'Haze_03827' => 'cav', 'Haze_07183' => 'cav', 'Haze_07537' => 'cav', 'Haze_07539' => 'cav', 'Haze_12461' => 'cav', 'Haze_16115' => 'cav', 'Haze_16808' => 'cav', 'Haze_18531' => 'cav', 'Hma1.2p1_0046F.1_g026700' => 'hma', 'Hma1.2p1_0046F.1_g026710' => 'hma', 'Hma1.2p1_0168F.1_g074340' => 'hma', 'Hma1.2p1_0266F.1_g107030' => 'hma', 'Hma1.2p1_0266F.1_g107060' => 'hma', 'Hma1.2p1_0275F.1_g110510' => 'hma', 'Hma1.2p1_0592F.1_g185490' => 'hma', 'Hma1.2p1_0592F.1_g185500' => 'hma', 'Hma1.2p1_0592F.1_g185510' => 'hma', 'Hma1.2p1_0592F.1_g185520' => 'hma', 'Hma1.2p1_0592F.1_g185530' => 'hma', 'Hma1.2p1_0818F.1_g223450' => 'hma', 'HPP92_009708' => 'vpl', 'HPP92_009793' => 'vpl', 'HPP92_009796' => 'vpl', 'HPP92_009797' => 'vpl', 'HPP92_014940' => 'vpl', 'HPP92_014988' => 'vpl', 'Hund02463' => 'sun', 'Hund02760' => 'sun', 'Hund05071' => 'sun', 'Hund10108' => 'sun', 'Hund11204' => 'sun', 'Hund14016' => 'sun', 'Hund16464' => 'sun', 'Lalb_Chr09g0333391' => 'lal', 'Lalb_Chr11g0070461' => 'lal', 'Lalb_Chr12g0201671' => 'lal', 'Lalb_Chr13g0297161' => 'lal', 'Lj1g0002823' => 'lja', 'Lj3C1074T6' => 'lonja', 'Lj4A212T28' => 'lonja', 'Lj4g0005516' => 'lja', 'Lj4g0013705' => 'lja', 'Lj4g0027865' => 'lja', 'Lj5C92G16' => 'lonja', 'Lj5C92T12' => 'lonja', 'Lj7C596T3' => 'lonja', 'Lj9A446G59' => 'lonja', 'Lj9A482G21' => 'lonja', 'Lsat_1_v5_gn_1_28261' => 'lsa', 'Lsat_1_v5_gn_1_28281' => 'lsa', 'Lsat_1_v5_gn_1_32721' => 'lsa', 'Lsat_1_v5_gn_4_151760' => 'lsa', 'Lsat_1_v5_gn_4_2120' => 'lsa', 'Lsat_1_v5_gn_4_75761' => 'lsa', 'Lsat_1_v5_gn_5_10920' => 'lsa', 'Manes.02G099900' => 'mes', 'Manes.11G096200' => 'mes', 'Manes.12G007200' => 'mes', 'Manes.14G048300' => 'mes', 'Manes.17G114700' => 'mes', 'Mapoly0002s0070' => 'mpo', 'Mapoly0029s0099' => 'mpo', 'MBI07_g24742_MAGBIO' => 'mbi', 'MBI10_g27988_MAGBIO' => 'mbi', 'MBI11_g13057_MAGBIO' => 'mbi', 'MD02G1137200' => 'mdo', 'MD06G1137200' => 'mdo', 'MD07G1122300' => 'mdo', 'MD09G1078200' => 'mdo', 'MD13G1123700' => 'mdo', 'MD14G1151900' => 'mdo', 'MD17G1030900' => 'mdo', 'MD17G1068200' => 'mdo', 'MD17G1068600' => 'mdo', 'Medtr3g077540' => 'mtr', 'Medtr4g105530' => 'mtr', 'Medtr8g076580' => 'mtr', 'Medtr8g076590' => 'mtr', 'Medtr8g096410' => 'mtr', 'MELO3C016411.2' => 'cme', 'MELO3C017780.2' => 'cme', 'MELO3C022560.2' => 'cme', 'MELO3C026187.2' => 'cme', 'MELO3C026286.2' => 'cme', 'MELO3C032854.2' => 'cme', 'Migut.H02495' => 'egut', 'Migut.I00561' => 'egut', 'Migut.K01015' => 'egut', 'Migut.K01016' => 'egut', 'Migut.L00743' => 'egut', 'Migut.L00744' => 'egut', 'Migut.L00746' => 'egut', 'Migut.L00798' => 'egut', 'Migut.L00799' => 'egut', 'Migut.N02096' => 'egut', 'MSTRG.11259' => 'ama', 'MSTRG.23142' => 'ama', 'MSTRG.2499' => 'ama', 'Nitab4.5_0000003g0730' => 'nta', 'Nitab4.5_0000137g0020' => 'nta', 'Nitab4.5_0000721g0210' => 'nta', 'Nitab4.5_0000723g0050' => 'nta', 'Nitab4.5_0000913g0070' => 'nta', 'Nitab4.5_0001332g0040' => 'nta', 'Nitab4.5_0001771g0050' => 'nta', 'Nitab4.5_0001918g0050' => 'nta', 'Nitab4.5_0002686g0030' => 'nta', 'Nitab4.5_0003156g0020' => 'nta', 'Nitab4.5_0003383g0040' => 'nta', 'Nitab4.5_0003918g0010' => 'nta', 'Nitab4.5_0006760g0010' => 'nta', 'Nn1g05981' => 'nnu', 'Nn1g06288' => 'nnu', 'Nn3g16371' => 'nnu', 'Nn3g16786' => 'nnu', 'Nn4g22232' => 'nnu', 'Oeu005144.1' => 'oeu', 'Oeu005145.1' => 'oeu', 'Oeu011348.1' => 'oeu', 'Oeu016415.1' => 'oeu', 'Oeu023501.1' => 'oeu', 'Oeu044473.1' => 'oeu', 'Oeu048892.2' => 'oeu', 'Os01g0549200' => 'osa', 'Os02g0469300' => 'osa', 'Os04g0311100' => 'osa', 'Os06g0474900' => 'osa', 'Os10g0181700' => 'osa', 'Os11g0454800' => 'osa', 'Peaxi162Scf00037g00714' => 'pax', 'Peaxi162Scf00084g01217' => 'pax', 'Peaxi162Scf00257g00217' => 'pax', 'Peaxi162Scf00516g00215' => 'pax', 'Peaxi162Scf00689g00123' => 'pax', 'PGR044G2719' => 'pgr', 'PGR083G1360' => 'pgr', 'PGR102G2849' => 'pgr', 'PGR119G2534' => 'pgr', 'PGSC0003DMG400003538' => 'stu', 'PGSC0003DMG400028138' => 'stu', 'PGSC0003DMG400031732' => 'stu', 'PGSC0003DMG400038165' => 'stu', 'Phvul.002G284600' => 'pvu', 'Phvul.003G258200' => 'pvu', 'Phvul.009G176500' => 'pvu', 'Potri.003G167201' => 'ptr', 'Potri.005G118400' => 'ptr', 'Potri.012G089000' => 'ptr', 'Potri.012G102800' => 'ptr', 'Potri.015G079400' => 'ptr', 'Potri.015G100900' => 'ptr', 'Pp3c14_9810' => 'ppa', 'Pp3c15_10450' => 'ppa', 'Pp3c20_19150' => 'ppa', 'Pp3c23_12740' => 'ppa', 'Pp3c23_6310' => 'ppa', 'Pp3c24_3720' => 'ppa', 'Pp3c27_2580' => 'ppa', 'Pp3c9_8990' => 'ppa', 'PRCOL_00002854' => 'pco', 'Prupe.1G221200' => 'ppe', 'Prupe.3G289000' => 'ppe', 'Prupe.5G147000' => 'ppe', 'Prupe.6G157300' => 'ppe', 'Prupe.7G163400' => 'ppe', 'Psat0s2177g0040' => 'psa', 'Psat3g174760' => 'psa', 'Psat3g192160' => 'psa', 'Psat4g058520' => 'psa', 'Psat4g096840' => 'psa', 'Psat7g037320' => 'psa', 'PSO017G1274' => 'pso', 'PSO017G5166' => 'pso', 'PSO063G4558' => 'pso', 'PSO170G4458' => 'pso', 'PSO170G5005' => 'pso', 'PSO210G6156' => 'pso', 'PSO210G6635' => 'pso', 'PSO210G7397' => 'pso', 'PSO210G7700' => 'pso', 'PSO455G0035' => 'pso', 'PSO455G0180' => 'pso', 'PSO478G4515' => 'pso', 'PSO832G1305' => 'pso', 'PSO832G3489' => 'pso', 'QL02p075247' => 'qlo', 'QL03p051148' => 'qlo', 'QL05p010313' => 'qlo', 'QL06p034627' => 'qlo', 'QL10p001889' => 'qlo', 'QL10p010846' => 'qlo', 'RcHm_v2.0_Chr1g0350621' => 'rch', 'RcHm_v2.0_Chr1g0350641' => 'rch', 'RcHm_v2.0_Chr2g0092891' => 'rch', 'RcHm_v2.0_Chr2g0100251' => 'rch', 'RcHm_v2.0_Chr2g0158661' => 'rch', 'RcHm_v2.0_Chr2g0172741' => 'rch', 'RcHm_v2.0_Chr4g0429571' => 'rch', 'RcHm_v2.0_Chr5g0042471' => 'rch', 'RcHm_v2.0_Chr7g0189451' => 'rch', 'Rhsim08G0052000' => 'rsi', 'Rhsim08G0174400' => 'rsi', 'Rhsim08G0193200' => 'rsi', 'Rhsim10G0214800' => 'rsi', 'Rhsim10G0214900' => 'rsi', 'Rhsim10G0215000' => 'rsi', 'Rhsim12G0022900' => 'rsi', 'Rhsim12G0177500' => 'rsi', 'Rhsim12G0177700' => 'rsi', 'Sabra03G0122600' => 'sbr', 'Sabra05G0097400' => 'sbr', 'Sabra12G0064100' => 'sbr', 'Sabra15G0121300' => 'sbr', 'SalBow2G0642' => 'sbo', 'SalBow5G2667' => 'sbo', 'SalBow5G4873' => 'sbo', 'SalBow8G2395' => 'sbo', 'Sc03g0003290' => 'sci', 'Sc10g0010130' => 'sci', 'Sc22g0003650' => 'sci', 'Sed0001603' => 'sed', 'Sed0004259' => 'sed', 'Sed0006789' => 'sed', 'Sed0011838' => 'sed', 'Sed0012964' => 'sed', 'Sed0016383' => 'sed', 'Sed0019010' => 'sed', 'Sed0020188' => 'sed', 'SEGI_04702' => 'sgi', 'SEGI_17231' => 'sgi', 'SEGI_18877' => 'sgi', 'SEGI_25196' => 'sgi', 'SEGI_25515' => 'sgi', 'SEGI_28445' => 'sgi', 'SEGI_37452' => 'sgi', 'SGA_v2.0_scaffold188G40336' => 'sas', 'SGA_v2.0_scaffold228G43247' => 'sas', 'SGA_v2.0_scaffold280G46853' => 'sas', 'SGA_v2.0_scaffold34G13808' => 'sas', 'SGA_v2.0_scaffold40G15576' => 'sas', 'SGA_v2.0_scaffold611G53188' => 'sas', 'SGA_v2.0_scaffold78G25461' => 'sas', 'SGA_v2.0_scaffold90G27888' => 'sas', 'SHI08601' => 'shi', 'SHI08606' => 'shi', 'SHI17117' => 'shi', 'SHI17119' => 'shi', 'SMO118G0201' => 'smo', 'SMO169G0247' => 'smo', 'SMO176G0006' => 'smo', 'SMO176G0015' => 'smo', 'SMO202G0006' => 'smo', 'SMO240G0050' => 'smo', 'SMO286G0009' => 'smo', 'SMO338G0033' => 'smo', 'SMO356G0533' => 'smo', 'SMO364G0382' => 'smo', 'SMO367G0166' => 'smo', 'SMO367G1098' => 'smo', 'Solyc01g009920.3' => 'sly', 'Solyc01g099300.3' => 'sly', 'Solyc02g084700.3' => 'sly', 'Solyc03g097520.3' => 'sly', 'Solyc06g071580.3' => 'sly', 'Solyc10g081760.3' => 'sly', 'Sopen01g005480' => 'spe', 'Sopen01g042850' => 'spe', 'Sopen02g029370' => 'spe', 'Sopen03g028280' => 'spe', 'Sopen06g027870' => 'spe', 'Sopen10g032270' => 'spe', 'Sp5g18180' => 'spa', 'Sp6g12880' => 'spa', 'Sp6g30850' => 'spa', 'Sp7g22960' => 'spa', 'Sp7g34010' => 'spa', 'SpUn1326_0010' => 'spa', 'TAR371G0242' => 'tar', 'TAR622G0638' => 'tar', 'TAR628G1548' => 'tar', 'TAR629G1079' => 'tar', 'TAR629G3413' => 'tar', 'THA.LOC104804249' => 'tha', 'THA.LOC104808315' => 'tha', 'THA.LOC104809238' => 'tha', 'THA.LOC104825484' => 'tha', 'Thecc.01G025500' => 'tca', 'Thecc.03G015800' => 'tca', 'Thecc.03G018000' => 'tca', 'Thecc.03G134800' => 'tca', 'Thecc.04G014700' => 'tca', 'Thhalv10006991m.g' => 'esa', 'Thhalv10012707m.g' => 'esa', 'Thhalv10015739m.g' => 'esa', 'Thhalv10024553m.g' => 'esa', 'Thhalv10024673m.g' => 'esa', 'Thhalv10029187m.g' => 'esa', 'TPR.G12971' => 'tpr', 'TPR.G29396' => 'tpr', 'TPR.G33376' => 'tpr', 'TPR.G35508' => 'tpr', 'TPR.G35516' => 'tpr', 'TPR.G37317' => 'tpr', 'TPR.G37389' => 'tpr', 'TPR.G37523' => 'tpr', 'TPR.G559' => 'tpr', 'TWI14G0070' => 'twi', 'TWI14G0729' => 'twi', 'TWI18G0596' => 'twi', 'TWI39G0780' => 'twi', 'TWI39G0850' => 'twi', 'TWI73G1052' => 'twi', 'unitig_52.g17485' => 'ugi', 'unitig_61.g26355' => 'ugi', 'vmacro01040' => 'vma', 'vmacro16731' => 'vma', 'vmacro18270' => 'vma', 'vmacro19142' => 'vma', 'vmacro19407' => 'vma', 'vmacro19408' => 'vma', 'vmacro21899' => 'vma', 'vmacro21900' => 'vma', 'vmacro21901' => 'vma', 'VMungo0251G0490' => 'vmu', 'VMungo0251G1748' => 'vmu', 'VMungo1309G0421' => 'vmu', 'Zm00001eb086500' => 'zma', 'Zm00001eb150680' => 'zma', 'Zm00001eb162330' => 'zma', 'Zm00001eb203130' => 'zma', 'Zm00001eb369480' => 'zma', 'Zm00001eb382340' => 'zma', 'Zm00001eb416360' => 'zma' ), 'gf_id' => 'HOM05D000902', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000902' ), 'data_identifier' => 'HOM05D000902', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000902', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '663', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02470' => 'bna', 'A01p16260' => 'bna', 'A02p01680' => 'bna', 'A03p16600' => 'bna', 'A03p55660' => 'bna', 'A03p64160' => 'bna', 'A03p64170' => 'bna', 'A08p31900' => 'bna', 'A09p59530' => 'bna', 'A10p08230' => 'bna', 'A10p25090' => 'bna', 'Aa31LG3G7100' => 'aar', 'Aa31LG3G7110' => 'aar', 'Aa31LG6G13160' => 'aar', 'Aa31LG7G10770' => 'aar', 'Aa31LG7G3830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2723' => 'aag', 'Actinidia08045' => 'ach', 'Actinidia08888' => 'ach', 'Actinidia18333' => 'ach', 'Actinidia19334' => 'ach', 'Actinidia25552' => 'ach', 'Actinidia26089' => 'ach', 'Actinidia30615' => 'ach', 'Actinidia30616' => 'ach', 'Actinidia33083' => 'ach', 'Actinidia35762' => 'ach', 'Ah.02g110620' => 'amhyb', 'Ah.11g046390' => 'amhyb', 'AL1G31670' => 'aly', 'AL6G23730' => 'aly', 'AL7G14740' => 'aly', 'AL7G14750' => 'aly', 'AL7G14760' => 'aly', 'AL7G28220' => 'aly', 'AL8G24940' => 'aly', 'Aqoxy3G01665' => 'aox', 'Aqoxy3G02853' => 'aox', 'Aqoxy5G01513' => 'aox', 'Aqoxy5G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8SKA4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ75LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKDA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0LJZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7REX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZP4YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWX7I5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2QKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS0L9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPCD8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q161UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC7XCF' => 'arhy', 'AT1G19100' => 'ath', 'AT4G24970' => 'ath', 'AT4G36270' => 'ath', 'AT4G36280' => 'ath', 'AT4G36290' => 'ath', 'AT5G13130' => 'ath', 'AT5G50780' => 'ath', 'ATR0582G266' => 'atr', 'ATR0661G195' => 'atr', 'ATR1152G031' => 'atr', 'Atru.chr11.2382' => 'acertr', 'Atru.chr12.2337' => 'acertr', 'Atru.chr3.744' => 'acertr', 'Atru.chr6.1870' => 'acertr', 'Atru.chr9.2515' => 'acertr', 'AUR62004120' => 'cqu', 'AUR62005667' => 'cqu', 'AUR62007634' => 'cqu', 'AUR62008186' => 'cqu', 'AUR62008187' => 'cqu', 'AUR62008188' => 'cqu', 'AUR62027954' => 'cqu', 'AUR62028766' => 'cqu', 'AUR62028767' => 'cqu', 'AUR62028768' => 'cqu', 'AUR62028886' => 'cqu', 'AUR62029563' => 'cqu', 'AUR62038832' => 'cqu', 'BcaB01g04149' => 'bca', 'BcaB03g12940' => 'bca', 'BcaB03g13090' => 'bca', 'BcaB03g14466' => 'bca', 'BcaB05g24035' => 'bca', 'BcaC01g06050' => 'bca', 'BcaC04g19148' => 'bca', 'BcaC04g20761' => 'bca', 'BcaC06g32845' => 'bca', 'BcaC07g41274' => 'bca', 'BcaC09g50827' => 'bca', 'BcaNung00741' => 'bca', 'BcaNung00742' => 'bca', 'BcaNung01859' => 'bca', 'BcaNung03985' => 'bca', 'BcaNung03989' => 'bca', 'BcaNung05661' => 'bca', 'BolC1t00257H' => 'bol', 'BolC1t01956H' => 'bol', 'BolC2t06534H' => 'bol', 'BolC3t14334H' => 'bol', 'BolC5t30451H' => 'bol', 'BolC7t45880H' => 'bol', 'BolC7t46586H' => 'bol', 'BolC8t49301H' => 'bol', 'BolC8t51837H' => 'bol', 'BolC9t56822H' => 'bol', 'BolC9t59235H' => 'bol', 'BraA01t00234Z' => 'bra', 'BraA01t01563Z' => 'bra', 'BraA02t05147Z' => 'bra', 'BraA03t10947Z' => 'bra', 'BraA03t14633Z' => 'bra', 'BraA08t35112Z' => 'bra', 'BraA09t41330Z' => 'bra', 'BraA10t44570Z' => 'bra', 'C01p02670' => 'bna', 'C01p20260' => 'bna', 'C02p05890' => 'bna', 'C03p19530' => 'bna', 'C05p17470' => 'bna', 'C07p53900' => 'bna', 'C07p61630' => 'bna', 'C08p16800' => 'bna', 'C08p42810' => 'bna', 'C09p39480' => 'bna', 'C09p63980' => 'bna', 'CAN.G1001.7' => 'can', 'CAN.G1034.55' => 'can', 'CAN.G143.7' => 'can', 'CAN.G3340.1' => 'can', 'CAN.G358.19' => 'can', 'CAN.G373.2' => 'can', 'CAN.G674.16' => 'can', 'CAN.G674.17' => 'can', 'CAN.G674.18' => 'can', 'CAN.G732.2' => 'can', 'CAN.G732.3' => 'can', 'CAN.G993.39' => 'can', 'CANSAT01G2052' => 'cansat', 'CANSAT80G0070' => 'cansat', 'CANSAT80G0483' => 'cansat', 'CANSAT80G0625' => 'cansat', 'CARHR019690' => 'chi', 'CARHR080280' => 'chi', 'CARHR152750' => 'chi', 'CARHR152760' => 'chi', 'CARHR152770' => 'chi', 'CARHR200340' => 'chi', 'CARHR232370' => 'chi', 'CARHR244670' => 'chi', 'CARHR244680' => 'chi', 'CARHR257520' => 'chi', 'Carub.0001s1872' => 'cru', 'Carub.0006s1130' => 'cru', 'Carub.0007s0396' => 'cru', 'Carub.0007s0397' => 'cru', 'Carub.0007s1608' => 'cru', 'Carub.0008s1068' => 'cru', 'Carub.0008s1077' => 'cru', 'Ca_16158_v3' => 'car', 'Ca_17571_v3' => 'car', 'Ca_21936_v3' => 'car', 'Ca_22350_v3' => 'car', 'CBR_g22445' => 'cbr', 'CBR_g26290' => 'cbr', 'Cc04_g09610' => 'ccan', 'Cc04_g12280' => 'ccan', 'Cc07_g10230' => 'ccan', 'CDE02G0093' => 'cde', 'CDE02G0701' => 'cde', 'CDE04G1050' => 'cde', 'CDE05G1833' => 'cde', 'CDE05G3058' => 'cde', 'CDE05G3380' => 'cde', 'CDE06G0536' => 'cde', 'Cfa006923' => 'cfa', 'Cfa009402' => 'cfa', 'Cfa018751' => 'cfa', 'Cfa019164' => 'cfa', 'Cfa022935' => 'cfa', 'Ciclev10019081m.g' => 'ccl', 'Ciclev10025076m.g' => 'ccl', 'Ciclev10030712m.g' => 'ccl', 'Ciclev10033760m.g' => 'ccl', 'CiPaw.05G105600' => 'cil', 'CiPaw.08G136700' => 'cil', 'CiPaw.11G003900' => 'cil', 'CiPaw.11G023700' => 'cil', 'CiPaw.12G003700' => 'cil', 'ClCG06G017100' => 'cla', 'ClCG06G018110' => 'cla', 'ClCG07G008800' => 'cla', 'ClCG07G015330' => 'cla', 'COL.COLO4_13698' => 'col', 'COL.COLO4_16659' => 'col', 'COL.COLO4_21986' => 'col', 'COL.COLO4_24049' => 'col', 'COL.COLO4_29061' => 'col', 'COL.COLO4_29075' => 'col', 'COL.COLO4_30094' => 'col', 'Cpa.g.c33689' => 'cpa', 'Cpa.g.sc108.39' => 'cpa', 'Cpa.g.sc108.41' => 'cpa', 'Cpa.g.sc1163.1' => 'cpa', 'Cpa.g.sc4.155' => 'cpa', 'Cpa.g.sc6.194' => 'cpa', 'CsaV3_1G000340' => 'csa', 'CsaV3_1G001400' => 'csa', 'CsaV3_4G002220' => 'csa', 'CsaV3_4G005370' => 'csa', 'CSS0007487' => 'camsi', 'CSS0008066' => 'camsi', 'CSS0009120' => 'camsi', 'CSS0015512' => 'camsi', 'CSS0022409' => 'camsi', 'CSS0025358' => 'camsi', 'CSS0044547' => 'camsi', 'DCAR_013057' => 'dca', 'DCAR_015058' => 'dca', 'DCAR_016027' => 'dca', 'DCAR_017327' => 'dca', 'DCAR_020743' => 'dca', 'DCAR_026157' => 'dca', 'DCAR_032339' => 'dca', 'DCAR_032340' => 'dca', 'Dinv11200' => 'din', 'Dinv11201' => 'din', 'Dinv20631' => 'din', 'Dinv23182' => 'din', 'Dinv33466' => 'din', 'Dinv33583' => 'din', 'Dinv38565' => 'din', 'Duzib068G0200' => 'dzi', 'Duzib147G0132' => 'dzi', 'Duzib147G0635' => 'dzi', 'Duzib205G1670' => 'dzi', 'Duzib251G0606' => 'dzi', 'ECA232G3336' => 'eca', 'ECA232G3763' => 'eca', 'ECA232G4845' => 'eca', 'ECA234G1607' => 'eca', 'ECA246G0932' => 'eca', 'ECA247G0781' => 'eca', 'ECA247G1932' => 'eca', 'ECA247G2079' => 'eca', 'ECA247G3338' => 'eca', 'ECA247G4115' => 'eca', 'EL10Ac3g06552' => 'bvu', 'EL10Ac5g10721' => 'bvu', 'EL10Ac5g10722' => 'bvu', 'EL10Ac5g10723' => 'bvu', 'EL10Ac5g11361' => 'bvu', 'EL10Ac6g13553' => 'bvu', 'EL10As8g23872' => 'bvu', 'Eucgr.B00250' => 'egr', 'Eucgr.B00251' => 'egr', 'Eucgr.B03533' => 'egr', 'Eucgr.I02381' => 'egr', 'Eucgr.K02700' => 'egr', 'FAN02G0174' => 'fan', 'FAN02G3146' => 'fan', 'FAN04G1672' => 'fan', 'FAN04G2273' => 'fan', 'FAN05G2791' => 'fan', 'FAN05G4035' => 'fan', 'FAN07G0834' => 'fan', 'FAN08G1198' => 'fan', 'FAN09G4182' => 'fan', 'FAN12G0496' => 'fan', 'FAN13G1027' => 'fan', 'FAN13G2951' => 'fan', 'FAN14G0705' => 'fan', 'FAN14G0720' => 'fan', 'FAN17G0201' => 'fan', 'FAN17G2665' => 'fan', 'FAN18G1456' => 'fan', 'FAN18G1525' => 'fan', 'FAN18G3500' => 'fan', 'FAN28G2670' => 'fan', 'FvH4_1g12391' => 'fve', 'FvH4_4g23220' => 'fve', 'FvH4_5g08810' => 'fve', 'FvH4_5g28960' => 'fve', 'FvH4_6g42820' => 'fve', 'FvH4_6g51110' => 'fve', 'Glyma.02G051802' => 'gma', 'Glyma.04G185300' => 'gma', 'Glyma.05G202900' => 'gma', 'Glyma.08G010300' => 'gma', 'Glyma.16G131900' => 'gma', 'Glyma.17G087900' => 'gma', 'Gohir.A07G048600' => 'ghi', 'Gohir.A11G179000' => 'ghi', 'Gohir.A12G140900' => 'ghi', 'Gohir.A12G140950' => 'ghi', 'Gohir.A12G191700' => 'ghi', 'Gohir.A13G086300' => 'ghi', 'Gohir.D07G052900' => 'ghi', 'Gohir.D11G186600' => 'ghi', 'Gohir.D12G145575' => 'ghi', 'Gohir.D12G145650' => 'ghi', 'Gohir.D12G145725' => 'ghi', 'Gohir.D12G194050' => 'ghi', 'Gohir.D13G091800' => 'ghi', 'Gorai.001G055900' => 'gra', 'Gorai.007G198400' => 'gra', 'Gorai.008G157000' => 'gra', 'Gorai.008G157100' => 'gra', 'Gorai.008G208700' => 'gra', 'Gorai.010G138700' => 'gra', 'GSVIVG01000977001' => 'vvi', 'GSVIVG01007708001' => 'vvi', 'GSVIVG01008587001' => 'vvi', 'GSVIVG01018849001' => 'vvi', 'GSVIVG01032432001' => 'vvi', 'HanXRQChr02g0034131' => 'han', 'HanXRQChr02g0035981' => 'han', 'HanXRQChr02g0035991' => 'han', 'HanXRQChr05g0155611' => 'han', 'HanXRQChr05g0155621' => 'han', 'HanXRQChr08g0236501' => 'han', 'HanXRQChr09g0261321' => 'han', 'HanXRQChr09g0272081' => 'han', 'HanXRQChr10g0310741' => 'han', 'HanXRQChr11g0325591' => 'han', 'HanXRQChr12g0385691' => 'han', 'HanXRQChr13g0387801' => 'han', 'HanXRQChr15g0463011' => 'han', 'Haze_03826' => 'cav', 'Haze_03827' => 'cav', 'Haze_07183' => 'cav', 'Haze_07537' => 'cav', 'Haze_07539' => 'cav', 'Haze_12461' => 'cav', 'Haze_16115' => 'cav', 'Haze_16808' => 'cav', 'Haze_18531' => 'cav', 'Hma1.2p1_0046F.1_g026700' => 'hma', 'Hma1.2p1_0046F.1_g026710' => 'hma', 'Hma1.2p1_0168F.1_g074340' => 'hma', 'Hma1.2p1_0266F.1_g107030' => 'hma', 'Hma1.2p1_0266F.1_g107060' => 'hma', 'Hma1.2p1_0275F.1_g110510' => 'hma', 'Hma1.2p1_0592F.1_g185490' => 'hma', 'Hma1.2p1_0592F.1_g185500' => 'hma', 'Hma1.2p1_0592F.1_g185510' => 'hma', 'Hma1.2p1_0592F.1_g185520' => 'hma', 'Hma1.2p1_0592F.1_g185530' => 'hma', 'Hma1.2p1_0818F.1_g223450' => 'hma', 'HPP92_009708' => 'vpl', 'HPP92_009793' => 'vpl', 'HPP92_009796' => 'vpl', 'HPP92_009797' => 'vpl', 'HPP92_014940' => 'vpl', 'HPP92_014988' => 'vpl', 'Hund02463' => 'sun', 'Hund02760' => 'sun', 'Hund05071' => 'sun', 'Hund10108' => 'sun', 'Hund11204' => 'sun', 'Hund14016' => 'sun', 'Hund16464' => 'sun', 'Lalb_Chr09g0333391' => 'lal', 'Lalb_Chr11g0070461' => 'lal', 'Lalb_Chr12g0201671' => 'lal', 'Lalb_Chr13g0297161' => 'lal', 'Lj1g0002823' => 'lja', 'Lj3C1074T6' => 'lonja', 'Lj4A212T28' => 'lonja', 'Lj4g0005516' => 'lja', 'Lj4g0013705' => 'lja', 'Lj4g0027865' => 'lja', 'Lj5C92G16' => 'lonja', 'Lj5C92T12' => 'lonja', 'Lj7C596T3' => 'lonja', 'Lj9A446G59' => 'lonja', 'Lj9A482G21' => 'lonja', 'Lsat_1_v5_gn_1_28261' => 'lsa', 'Lsat_1_v5_gn_1_28281' => 'lsa', 'Lsat_1_v5_gn_1_32721' => 'lsa', 'Lsat_1_v5_gn_4_151760' => 'lsa', 'Lsat_1_v5_gn_4_2120' => 'lsa', 'Lsat_1_v5_gn_4_75761' => 'lsa', 'Lsat_1_v5_gn_5_10920' => 'lsa', 'Manes.02G099900' => 'mes', 'Manes.11G096200' => 'mes', 'Manes.12G007200' => 'mes', 'Manes.14G048300' => 'mes', 'Manes.17G114700' => 'mes', 'Mapoly0002s0070' => 'mpo', 'Mapoly0029s0099' => 'mpo', 'MBI07_g24742_MAGBIO' => 'mbi', 'MBI10_g27988_MAGBIO' => 'mbi', 'MBI11_g13057_MAGBIO' => 'mbi', 'MD02G1137200' => 'mdo', 'MD06G1137200' => 'mdo', 'MD07G1122300' => 'mdo', 'MD09G1078200' => 'mdo', 'MD13G1123700' => 'mdo', 'MD14G1151900' => 'mdo', 'MD17G1030900' => 'mdo', 'MD17G1068200' => 'mdo', 'MD17G1068600' => 'mdo', 'Medtr3g077540' => 'mtr', 'Medtr4g105530' => 'mtr', 'Medtr8g076580' => 'mtr', 'Medtr8g076590' => 'mtr', 'Medtr8g096410' => 'mtr', 'MELO3C016411.2' => 'cme', 'MELO3C017780.2' => 'cme', 'MELO3C022560.2' => 'cme', 'MELO3C026187.2' => 'cme', 'MELO3C026286.2' => 'cme', 'MELO3C032854.2' => 'cme', 'Migut.H02495' => 'egut', 'Migut.I00561' => 'egut', 'Migut.K01015' => 'egut', 'Migut.K01016' => 'egut', 'Migut.L00743' => 'egut', 'Migut.L00744' => 'egut', 'Migut.L00746' => 'egut', 'Migut.L00798' => 'egut', 'Migut.L00799' => 'egut', 'Migut.N02096' => 'egut', 'MSTRG.11259' => 'ama', 'MSTRG.23142' => 'ama', 'MSTRG.2499' => 'ama', 'Nitab4.5_0000003g0730' => 'nta', 'Nitab4.5_0000137g0020' => 'nta', 'Nitab4.5_0000721g0210' => 'nta', 'Nitab4.5_0000723g0050' => 'nta', 'Nitab4.5_0000913g0070' => 'nta', 'Nitab4.5_0001332g0040' => 'nta', 'Nitab4.5_0001771g0050' => 'nta', 'Nitab4.5_0001918g0050' => 'nta', 'Nitab4.5_0002686g0030' => 'nta', 'Nitab4.5_0003156g0020' => 'nta', 'Nitab4.5_0003383g0040' => 'nta', 'Nitab4.5_0003918g0010' => 'nta', 'Nitab4.5_0006760g0010' => 'nta', 'Nn1g05981' => 'nnu', 'Nn1g06288' => 'nnu', 'Nn3g16371' => 'nnu', 'Nn3g16786' => 'nnu', 'Nn4g22232' => 'nnu', 'Oeu005144.1' => 'oeu', 'Oeu005145.1' => 'oeu', 'Oeu011348.1' => 'oeu', 'Oeu016415.1' => 'oeu', 'Oeu023501.1' => 'oeu', 'Oeu044473.1' => 'oeu', 'Oeu048892.2' => 'oeu', 'Os01g0549200' => 'osa', 'Os02g0469300' => 'osa', 'Os04g0311100' => 'osa', 'Os06g0474900' => 'osa', 'Os10g0181700' => 'osa', 'Os11g0454800' => 'osa', 'Peaxi162Scf00037g00714' => 'pax', 'Peaxi162Scf00084g01217' => 'pax', 'Peaxi162Scf00257g00217' => 'pax', 'Peaxi162Scf00516g00215' => 'pax', 'Peaxi162Scf00689g00123' => 'pax', 'PGR044G2719' => 'pgr', 'PGR083G1360' => 'pgr', 'PGR102G2849' => 'pgr', 'PGR119G2534' => 'pgr', 'PGSC0003DMG400003538' => 'stu', 'PGSC0003DMG400028138' => 'stu', 'PGSC0003DMG400031732' => 'stu', 'PGSC0003DMG400038165' => 'stu', 'Phvul.002G284600' => 'pvu', 'Phvul.003G258200' => 'pvu', 'Phvul.009G176500' => 'pvu', 'Potri.003G167201' => 'ptr', 'Potri.005G118400' => 'ptr', 'Potri.012G089000' => 'ptr', 'Potri.012G102800' => 'ptr', 'Potri.015G079400' => 'ptr', 'Potri.015G100900' => 'ptr', 'Pp3c14_9810' => 'ppa', 'Pp3c15_10450' => 'ppa', 'Pp3c20_19150' => 'ppa', 'Pp3c23_12740' => 'ppa', 'Pp3c23_6310' => 'ppa', 'Pp3c24_3720' => 'ppa', 'Pp3c27_2580' => 'ppa', 'Pp3c9_8990' => 'ppa', 'PRCOL_00002854' => 'pco', 'Prupe.1G221200' => 'ppe', 'Prupe.3G289000' => 'ppe', 'Prupe.5G147000' => 'ppe', 'Prupe.6G157300' => 'ppe', 'Prupe.7G163400' => 'ppe', 'Psat0s2177g0040' => 'psa', 'Psat3g174760' => 'psa', 'Psat3g192160' => 'psa', 'Psat4g058520' => 'psa', 'Psat4g096840' => 'psa', 'Psat7g037320' => 'psa', 'PSO017G1274' => 'pso', 'PSO017G5166' => 'pso', 'PSO063G4558' => 'pso', 'PSO170G4458' => 'pso', 'PSO170G5005' => 'pso', 'PSO210G6156' => 'pso', 'PSO210G6635' => 'pso', 'PSO210G7397' => 'pso', 'PSO210G7700' => 'pso', 'PSO455G0035' => 'pso', 'PSO455G0180' => 'pso', 'PSO478G4515' => 'pso', 'PSO832G1305' => 'pso', 'PSO832G3489' => 'pso', 'QL02p075247' => 'qlo', 'QL03p051148' => 'qlo', 'QL05p010313' => 'qlo', 'QL06p034627' => 'qlo', 'QL10p001889' => 'qlo', 'QL10p010846' => 'qlo', 'RcHm_v2.0_Chr1g0350621' => 'rch', 'RcHm_v2.0_Chr1g0350641' => 'rch', 'RcHm_v2.0_Chr2g0092891' => 'rch', 'RcHm_v2.0_Chr2g0100251' => 'rch', 'RcHm_v2.0_Chr2g0158661' => 'rch', 'RcHm_v2.0_Chr2g0172741' => 'rch', 'RcHm_v2.0_Chr4g0429571' => 'rch', 'RcHm_v2.0_Chr5g0042471' => 'rch', 'RcHm_v2.0_Chr7g0189451' => 'rch', 'Rhsim08G0052000' => 'rsi', 'Rhsim08G0174400' => 'rsi', 'Rhsim08G0193200' => 'rsi', 'Rhsim10G0214800' => 'rsi', 'Rhsim10G0214900' => 'rsi', 'Rhsim10G0215000' => 'rsi', 'Rhsim12G0022900' => 'rsi', 'Rhsim12G0177500' => 'rsi', 'Rhsim12G0177700' => 'rsi', 'Sabra03G0122600' => 'sbr', 'Sabra05G0097400' => 'sbr', 'Sabra12G0064100' => 'sbr', 'Sabra15G0121300' => 'sbr', 'SalBow2G0642' => 'sbo', 'SalBow5G2667' => 'sbo', 'SalBow5G4873' => 'sbo', 'SalBow8G2395' => 'sbo', 'Sc03g0003290' => 'sci', 'Sc10g0010130' => 'sci', 'Sc22g0003650' => 'sci', 'Sed0001603' => 'sed', 'Sed0004259' => 'sed', 'Sed0006789' => 'sed', 'Sed0011838' => 'sed', 'Sed0012964' => 'sed', 'Sed0016383' => 'sed', 'Sed0019010' => 'sed', 'Sed0020188' => 'sed', 'SEGI_04702' => 'sgi', 'SEGI_17231' => 'sgi', 'SEGI_18877' => 'sgi', 'SEGI_25196' => 'sgi', 'SEGI_25515' => 'sgi', 'SEGI_28445' => 'sgi', 'SEGI_37452' => 'sgi', 'SGA_v2.0_scaffold188G40336' => 'sas', 'SGA_v2.0_scaffold228G43247' => 'sas', 'SGA_v2.0_scaffold280G46853' => 'sas', 'SGA_v2.0_scaffold34G13808' => 'sas', 'SGA_v2.0_scaffold40G15576' => 'sas', 'SGA_v2.0_scaffold611G53188' => 'sas', 'SGA_v2.0_scaffold78G25461' => 'sas', 'SGA_v2.0_scaffold90G27888' => 'sas', 'SHI08601' => 'shi', 'SHI08606' => 'shi', 'SHI17117' => 'shi', 'SHI17119' => 'shi', 'SMO118G0201' => 'smo', 'SMO169G0247' => 'smo', 'SMO176G0006' => 'smo', 'SMO176G0015' => 'smo', 'SMO202G0006' => 'smo', 'SMO240G0050' => 'smo', 'SMO286G0009' => 'smo', 'SMO338G0033' => 'smo', 'SMO356G0533' => 'smo', 'SMO364G0382' => 'smo', 'SMO367G0166' => 'smo', 'SMO367G1098' => 'smo', 'Solyc01g009920.3' => 'sly', 'Solyc01g099300.3' => 'sly', 'Solyc02g084700.3' => 'sly', 'Solyc03g097520.3' => 'sly', 'Solyc06g071580.3' => 'sly', 'Solyc10g081760.3' => 'sly', 'Sopen01g005480' => 'spe', 'Sopen01g042850' => 'spe', 'Sopen02g029370' => 'spe', 'Sopen03g028280' => 'spe', 'Sopen06g027870' => 'spe', 'Sopen10g032270' => 'spe', 'Sp5g18180' => 'spa', 'Sp6g12880' => 'spa', 'Sp6g30850' => 'spa', 'Sp7g22960' => 'spa', 'Sp7g34010' => 'spa', 'SpUn1326_0010' => 'spa', 'TAR371G0242' => 'tar', 'TAR622G0638' => 'tar', 'TAR628G1548' => 'tar', 'TAR629G1079' => 'tar', 'TAR629G3413' => 'tar', 'THA.LOC104804249' => 'tha', 'THA.LOC104808315' => 'tha', 'THA.LOC104809238' => 'tha', 'THA.LOC104825484' => 'tha', 'Thecc.01G025500' => 'tca', 'Thecc.03G015800' => 'tca', 'Thecc.03G018000' => 'tca', 'Thecc.03G134800' => 'tca', 'Thecc.04G014700' => 'tca', 'Thhalv10006991m.g' => 'esa', 'Thhalv10012707m.g' => 'esa', 'Thhalv10015739m.g' => 'esa', 'Thhalv10024553m.g' => 'esa', 'Thhalv10024673m.g' => 'esa', 'Thhalv10029187m.g' => 'esa', 'TPR.G12971' => 'tpr', 'TPR.G29396' => 'tpr', 'TPR.G33376' => 'tpr', 'TPR.G35508' => 'tpr', 'TPR.G35516' => 'tpr', 'TPR.G37317' => 'tpr', 'TPR.G37389' => 'tpr', 'TPR.G37523' => 'tpr', 'TPR.G559' => 'tpr', 'TWI14G0070' => 'twi', 'TWI14G0729' => 'twi', 'TWI18G0596' => 'twi', 'TWI39G0780' => 'twi', 'TWI39G0850' => 'twi', 'TWI73G1052' => 'twi', 'unitig_52.g17485' => 'ugi', 'unitig_61.g26355' => 'ugi', 'vmacro01040' => 'vma', 'vmacro16731' => 'vma', 'vmacro18270' => 'vma', 'vmacro19142' => 'vma', 'vmacro19407' => 'vma', 'vmacro19408' => 'vma', 'vmacro21899' => 'vma', 'vmacro21900' => 'vma', 'vmacro21901' => 'vma', 'VMungo0251G0490' => 'vmu', 'VMungo0251G1748' => 'vmu', 'VMungo1309G0421' => 'vmu', 'Zm00001eb086500' => 'zma', 'Zm00001eb150680' => 'zma', 'Zm00001eb162330' => 'zma', 'Zm00001eb203130' => 'zma', 'Zm00001eb369480' => 'zma', 'Zm00001eb382340' => 'zma', 'Zm00001eb416360' => 'zma' ) $gf_id = 'HOM05D000902' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000902' ) $data_identifier = 'HOM05D000902' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 13, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 10, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 6, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 9, 'hma' => (int) 12, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 4, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 6, 'ppa' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 6, 'rch' => (int) 9, 'rsi' => (int) 9, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 12, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 3, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416360' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000902', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '663', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02470' => 'bna', 'A01p16260' => 'bna', 'A02p01680' => 'bna', 'A03p16600' => 'bna', 'A03p55660' => 'bna', 'A03p64160' => 'bna', 'A03p64170' => 'bna', 'A08p31900' => 'bna', 'A09p59530' => 'bna', 'A10p08230' => 'bna', 'A10p25090' => 'bna', 'Aa31LG3G7100' => 'aar', 'Aa31LG3G7110' => 'aar', 'Aa31LG6G13160' => 'aar', 'Aa31LG7G10770' => 'aar', 'Aa31LG7G3830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2723' => 'aag', 'Actinidia08045' => 'ach', 'Actinidia08888' => 'ach', 'Actinidia18333' => 'ach', 'Actinidia19334' => 'ach', 'Actinidia25552' => 'ach', 'Actinidia26089' => 'ach', 'Actinidia30615' => 'ach', 'Actinidia30616' => 'ach', 'Actinidia33083' => 'ach', 'Actinidia35762' => 'ach', 'Ah.02g110620' => 'amhyb', 'Ah.11g046390' => 'amhyb', 'AL1G31670' => 'aly', 'AL6G23730' => 'aly', 'AL7G14740' => 'aly', 'AL7G14750' => 'aly', 'AL7G14760' => 'aly', 'AL7G28220' => 'aly', 'AL8G24940' => 'aly', 'Aqoxy3G01665' => 'aox', 'Aqoxy3G02853' => 'aox', 'Aqoxy5G01513' => 'aox', 'Aqoxy5G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8SKA4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ75LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKDA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0LJZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7REX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZP4YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWX7I5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2QKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS0L9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPCD8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q161UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC7XCF' => 'arhy', 'AT1G19100' => 'ath', 'AT4G24970' => 'ath', 'AT4G36270' => 'ath', 'AT4G36280' => 'ath', 'AT4G36290' => 'ath', 'AT5G13130' => 'ath', 'AT5G50780' => 'ath', 'ATR0582G266' => 'atr', 'ATR0661G195' => 'atr', 'ATR1152G031' => 'atr', 'Atru.chr11.2382' => 'acertr', 'Atru.chr12.2337' => 'acertr', 'Atru.chr3.744' => 'acertr', 'Atru.chr6.1870' => 'acertr', 'Atru.chr9.2515' => 'acertr', 'AUR62004120' => 'cqu', 'AUR62005667' => 'cqu', 'AUR62007634' => 'cqu', 'AUR62008186' => 'cqu', 'AUR62008187' => 'cqu', 'AUR62008188' => 'cqu', 'AUR62027954' => 'cqu', 'AUR62028766' => 'cqu', 'AUR62028767' => 'cqu', 'AUR62028768' => 'cqu', 'AUR62028886' => 'cqu', 'AUR62029563' => 'cqu', 'AUR62038832' => 'cqu', 'BcaB01g04149' => 'bca', 'BcaB03g12940' => 'bca', 'BcaB03g13090' => 'bca', 'BcaB03g14466' => 'bca', 'BcaB05g24035' => 'bca', 'BcaC01g06050' => 'bca', 'BcaC04g19148' => 'bca', 'BcaC04g20761' => 'bca', 'BcaC06g32845' => 'bca', 'BcaC07g41274' => 'bca', 'BcaC09g50827' => 'bca', 'BcaNung00741' => 'bca', 'BcaNung00742' => 'bca', 'BcaNung01859' => 'bca', 'BcaNung03985' => 'bca', 'BcaNung03989' => 'bca', 'BcaNung05661' => 'bca', 'BolC1t00257H' => 'bol', 'BolC1t01956H' => 'bol', 'BolC2t06534H' => 'bol', 'BolC3t14334H' => 'bol', 'BolC5t30451H' => 'bol', 'BolC7t45880H' => 'bol', 'BolC7t46586H' => 'bol', 'BolC8t49301H' => 'bol', 'BolC8t51837H' => 'bol', 'BolC9t56822H' => 'bol', 'BolC9t59235H' => 'bol', 'BraA01t00234Z' => 'bra', 'BraA01t01563Z' => 'bra', 'BraA02t05147Z' => 'bra', 'BraA03t10947Z' => 'bra', 'BraA03t14633Z' => 'bra', 'BraA08t35112Z' => 'bra', 'BraA09t41330Z' => 'bra', 'BraA10t44570Z' => 'bra', 'C01p02670' => 'bna', 'C01p20260' => 'bna', 'C02p05890' => 'bna', 'C03p19530' => 'bna', 'C05p17470' => 'bna', 'C07p53900' => 'bna', 'C07p61630' => 'bna', 'C08p16800' => 'bna', 'C08p42810' => 'bna', 'C09p39480' => 'bna', 'C09p63980' => 'bna', 'CAN.G1001.7' => 'can', 'CAN.G1034.55' => 'can', 'CAN.G143.7' => 'can', 'CAN.G3340.1' => 'can', 'CAN.G358.19' => 'can', 'CAN.G373.2' => 'can', 'CAN.G674.16' => 'can', 'CAN.G674.17' => 'can', 'CAN.G674.18' => 'can', 'CAN.G732.2' => 'can', 'CAN.G732.3' => 'can', 'CAN.G993.39' => 'can', 'CANSAT01G2052' => 'cansat', 'CANSAT80G0070' => 'cansat', 'CANSAT80G0483' => 'cansat', 'CANSAT80G0625' => 'cansat', 'CARHR019690' => 'chi', 'CARHR080280' => 'chi', 'CARHR152750' => 'chi', 'CARHR152760' => 'chi', 'CARHR152770' => 'chi', 'CARHR200340' => 'chi', 'CARHR232370' => 'chi', 'CARHR244670' => 'chi', 'CARHR244680' => 'chi', 'CARHR257520' => 'chi', 'Carub.0001s1872' => 'cru', 'Carub.0006s1130' => 'cru', 'Carub.0007s0396' => 'cru', 'Carub.0007s0397' => 'cru', 'Carub.0007s1608' => 'cru', 'Carub.0008s1068' => 'cru', 'Carub.0008s1077' => 'cru', 'Ca_16158_v3' => 'car', 'Ca_17571_v3' => 'car', 'Ca_21936_v3' => 'car', 'Ca_22350_v3' => 'car', 'CBR_g22445' => 'cbr', 'CBR_g26290' => 'cbr', 'Cc04_g09610' => 'ccan', 'Cc04_g12280' => 'ccan', 'Cc07_g10230' => 'ccan', 'CDE02G0093' => 'cde', 'CDE02G0701' => 'cde', 'CDE04G1050' => 'cde', 'CDE05G1833' => 'cde', 'CDE05G3058' => 'cde', 'CDE05G3380' => 'cde', 'CDE06G0536' => 'cde', 'Cfa006923' => 'cfa', 'Cfa009402' => 'cfa', 'Cfa018751' => 'cfa', 'Cfa019164' => 'cfa', 'Cfa022935' => 'cfa', 'Ciclev10019081m.g' => 'ccl', 'Ciclev10025076m.g' => 'ccl', 'Ciclev10030712m.g' => 'ccl', 'Ciclev10033760m.g' => 'ccl', 'CiPaw.05G105600' => 'cil', 'CiPaw.08G136700' => 'cil', 'CiPaw.11G003900' => 'cil', 'CiPaw.11G023700' => 'cil', 'CiPaw.12G003700' => 'cil', 'ClCG06G017100' => 'cla', 'ClCG06G018110' => 'cla', 'ClCG07G008800' => 'cla', 'ClCG07G015330' => 'cla', 'COL.COLO4_13698' => 'col', 'COL.COLO4_16659' => 'col', 'COL.COLO4_21986' => 'col', 'COL.COLO4_24049' => 'col', 'COL.COLO4_29061' => 'col', 'COL.COLO4_29075' => 'col', 'COL.COLO4_30094' => 'col', 'Cpa.g.c33689' => 'cpa', 'Cpa.g.sc108.39' => 'cpa', 'Cpa.g.sc108.41' => 'cpa', 'Cpa.g.sc1163.1' => 'cpa', 'Cpa.g.sc4.155' => 'cpa', 'Cpa.g.sc6.194' => 'cpa', 'CsaV3_1G000340' => 'csa', 'CsaV3_1G001400' => 'csa', 'CsaV3_4G002220' => 'csa', 'CsaV3_4G005370' => 'csa', 'CSS0007487' => 'camsi', 'CSS0008066' => 'camsi', 'CSS0009120' => 'camsi', 'CSS0015512' => 'camsi', 'CSS0022409' => 'camsi', 'CSS0025358' => 'camsi', 'CSS0044547' => 'camsi', 'DCAR_013057' => 'dca', 'DCAR_015058' => 'dca', 'DCAR_016027' => 'dca', 'DCAR_017327' => 'dca', 'DCAR_020743' => 'dca', 'DCAR_026157' => 'dca', 'DCAR_032339' => 'dca', 'DCAR_032340' => 'dca', 'Dinv11200' => 'din', 'Dinv11201' => 'din', 'Dinv20631' => 'din', 'Dinv23182' => 'din', 'Dinv33466' => 'din', 'Dinv33583' => 'din', 'Dinv38565' => 'din', 'Duzib068G0200' => 'dzi', 'Duzib147G0132' => 'dzi', 'Duzib147G0635' => 'dzi', 'Duzib205G1670' => 'dzi', 'Duzib251G0606' => 'dzi', 'ECA232G3336' => 'eca', 'ECA232G3763' => 'eca', 'ECA232G4845' => 'eca', 'ECA234G1607' => 'eca', 'ECA246G0932' => 'eca', 'ECA247G0781' => 'eca', 'ECA247G1932' => 'eca', 'ECA247G2079' => 'eca', 'ECA247G3338' => 'eca', 'ECA247G4115' => 'eca', 'EL10Ac3g06552' => 'bvu', 'EL10Ac5g10721' => 'bvu', 'EL10Ac5g10722' => 'bvu', 'EL10Ac5g10723' => 'bvu', 'EL10Ac5g11361' => 'bvu', 'EL10Ac6g13553' => 'bvu', 'EL10As8g23872' => 'bvu', 'Eucgr.B00250' => 'egr', 'Eucgr.B00251' => 'egr', 'Eucgr.B03533' => 'egr', 'Eucgr.I02381' => 'egr', 'Eucgr.K02700' => 'egr', 'FAN02G0174' => 'fan', 'FAN02G3146' => 'fan', 'FAN04G1672' => 'fan', 'FAN04G2273' => 'fan', 'FAN05G2791' => 'fan', 'FAN05G4035' => 'fan', 'FAN07G0834' => 'fan', 'FAN08G1198' => 'fan', 'FAN09G4182' => 'fan', 'FAN12G0496' => 'fan', 'FAN13G1027' => 'fan', 'FAN13G2951' => 'fan', 'FAN14G0705' => 'fan', 'FAN14G0720' => 'fan', 'FAN17G0201' => 'fan', 'FAN17G2665' => 'fan', 'FAN18G1456' => 'fan', 'FAN18G1525' => 'fan', 'FAN18G3500' => 'fan', 'FAN28G2670' => 'fan', 'FvH4_1g12391' => 'fve', 'FvH4_4g23220' => 'fve', 'FvH4_5g08810' => 'fve', 'FvH4_5g28960' => 'fve', 'FvH4_6g42820' => 'fve', 'FvH4_6g51110' => 'fve', 'Glyma.02G051802' => 'gma', 'Glyma.04G185300' => 'gma', 'Glyma.05G202900' => 'gma', 'Glyma.08G010300' => 'gma', 'Glyma.16G131900' => 'gma', 'Glyma.17G087900' => 'gma', 'Gohir.A07G048600' => 'ghi', 'Gohir.A11G179000' => 'ghi', 'Gohir.A12G140900' => 'ghi', 'Gohir.A12G140950' => 'ghi', 'Gohir.A12G191700' => 'ghi', 'Gohir.A13G086300' => 'ghi', 'Gohir.D07G052900' => 'ghi', 'Gohir.D11G186600' => 'ghi', 'Gohir.D12G145575' => 'ghi', 'Gohir.D12G145650' => 'ghi', 'Gohir.D12G145725' => 'ghi', 'Gohir.D12G194050' => 'ghi', 'Gohir.D13G091800' => 'ghi', 'Gorai.001G055900' => 'gra', 'Gorai.007G198400' => 'gra', 'Gorai.008G157000' => 'gra', 'Gorai.008G157100' => 'gra', 'Gorai.008G208700' => 'gra', 'Gorai.010G138700' => 'gra', 'GSVIVG01000977001' => 'vvi', 'GSVIVG01007708001' => 'vvi', 'GSVIVG01008587001' => 'vvi', 'GSVIVG01018849001' => 'vvi', 'GSVIVG01032432001' => 'vvi', 'HanXRQChr02g0034131' => 'han', 'HanXRQChr02g0035981' => 'han', 'HanXRQChr02g0035991' => 'han', 'HanXRQChr05g0155611' => 'han', 'HanXRQChr05g0155621' => 'han', 'HanXRQChr08g0236501' => 'han', 'HanXRQChr09g0261321' => 'han', 'HanXRQChr09g0272081' => 'han', 'HanXRQChr10g0310741' => 'han', 'HanXRQChr11g0325591' => 'han', 'HanXRQChr12g0385691' => 'han', 'HanXRQChr13g0387801' => 'han', 'HanXRQChr15g0463011' => 'han', 'Haze_03826' => 'cav', 'Haze_03827' => 'cav', 'Haze_07183' => 'cav', 'Haze_07537' => 'cav', 'Haze_07539' => 'cav', 'Haze_12461' => 'cav', 'Haze_16115' => 'cav', 'Haze_16808' => 'cav', 'Haze_18531' => 'cav', 'Hma1.2p1_0046F.1_g026700' => 'hma', 'Hma1.2p1_0046F.1_g026710' => 'hma', 'Hma1.2p1_0168F.1_g074340' => 'hma', 'Hma1.2p1_0266F.1_g107030' => 'hma', 'Hma1.2p1_0266F.1_g107060' => 'hma', 'Hma1.2p1_0275F.1_g110510' => 'hma', 'Hma1.2p1_0592F.1_g185490' => 'hma', 'Hma1.2p1_0592F.1_g185500' => 'hma', 'Hma1.2p1_0592F.1_g185510' => 'hma', 'Hma1.2p1_0592F.1_g185520' => 'hma', 'Hma1.2p1_0592F.1_g185530' => 'hma', 'Hma1.2p1_0818F.1_g223450' => 'hma', 'HPP92_009708' => 'vpl', 'HPP92_009793' => 'vpl', 'HPP92_009796' => 'vpl', 'HPP92_009797' => 'vpl', 'HPP92_014940' => 'vpl', 'HPP92_014988' => 'vpl', 'Hund02463' => 'sun', 'Hund02760' => 'sun', 'Hund05071' => 'sun', 'Hund10108' => 'sun', 'Hund11204' => 'sun', 'Hund14016' => 'sun', 'Hund16464' => 'sun', 'Lalb_Chr09g0333391' => 'lal', 'Lalb_Chr11g0070461' => 'lal', 'Lalb_Chr12g0201671' => 'lal', 'Lalb_Chr13g0297161' => 'lal', 'Lj1g0002823' => 'lja', 'Lj3C1074T6' => 'lonja', 'Lj4A212T28' => 'lonja', 'Lj4g0005516' => 'lja', 'Lj4g0013705' => 'lja', 'Lj4g0027865' => 'lja', 'Lj5C92G16' => 'lonja', 'Lj5C92T12' => 'lonja', 'Lj7C596T3' => 'lonja', 'Lj9A446G59' => 'lonja', 'Lj9A482G21' => 'lonja', 'Lsat_1_v5_gn_1_28261' => 'lsa', 'Lsat_1_v5_gn_1_28281' => 'lsa', 'Lsat_1_v5_gn_1_32721' => 'lsa', 'Lsat_1_v5_gn_4_151760' => 'lsa', 'Lsat_1_v5_gn_4_2120' => 'lsa', 'Lsat_1_v5_gn_4_75761' => 'lsa', 'Lsat_1_v5_gn_5_10920' => 'lsa', 'Manes.02G099900' => 'mes', 'Manes.11G096200' => 'mes', 'Manes.12G007200' => 'mes', 'Manes.14G048300' => 'mes', 'Manes.17G114700' => 'mes', 'Mapoly0002s0070' => 'mpo', 'Mapoly0029s0099' => 'mpo', 'MBI07_g24742_MAGBIO' => 'mbi', 'MBI10_g27988_MAGBIO' => 'mbi', 'MBI11_g13057_MAGBIO' => 'mbi', 'MD02G1137200' => 'mdo', 'MD06G1137200' => 'mdo', 'MD07G1122300' => 'mdo', 'MD09G1078200' => 'mdo', 'MD13G1123700' => 'mdo', 'MD14G1151900' => 'mdo', 'MD17G1030900' => 'mdo', 'MD17G1068200' => 'mdo', 'MD17G1068600' => 'mdo', 'Medtr3g077540' => 'mtr', 'Medtr4g105530' => 'mtr', 'Medtr8g076580' => 'mtr', 'Medtr8g076590' => 'mtr', 'Medtr8g096410' => 'mtr', 'MELO3C016411.2' => 'cme', 'MELO3C017780.2' => 'cme', 'MELO3C022560.2' => 'cme', 'MELO3C026187.2' => 'cme', 'MELO3C026286.2' => 'cme', 'MELO3C032854.2' => 'cme', 'Migut.H02495' => 'egut', 'Migut.I00561' => 'egut', 'Migut.K01015' => 'egut', 'Migut.K01016' => 'egut', 'Migut.L00743' => 'egut', 'Migut.L00744' => 'egut', 'Migut.L00746' => 'egut', 'Migut.L00798' => 'egut', 'Migut.L00799' => 'egut', 'Migut.N02096' => 'egut', 'MSTRG.11259' => 'ama', 'MSTRG.23142' => 'ama', 'MSTRG.2499' => 'ama', 'Nitab4.5_0000003g0730' => 'nta', 'Nitab4.5_0000137g0020' => 'nta', 'Nitab4.5_0000721g0210' => 'nta', 'Nitab4.5_0000723g0050' => 'nta', 'Nitab4.5_0000913g0070' => 'nta', 'Nitab4.5_0001332g0040' => 'nta', 'Nitab4.5_0001771g0050' => 'nta', 'Nitab4.5_0001918g0050' => 'nta', 'Nitab4.5_0002686g0030' => 'nta', 'Nitab4.5_0003156g0020' => 'nta', 'Nitab4.5_0003383g0040' => 'nta', 'Nitab4.5_0003918g0010' => 'nta', 'Nitab4.5_0006760g0010' => 'nta', 'Nn1g05981' => 'nnu', 'Nn1g06288' => 'nnu', 'Nn3g16371' => 'nnu', 'Nn3g16786' => 'nnu', 'Nn4g22232' => 'nnu', 'Oeu005144.1' => 'oeu', 'Oeu005145.1' => 'oeu', 'Oeu011348.1' => 'oeu', 'Oeu016415.1' => 'oeu', 'Oeu023501.1' => 'oeu', 'Oeu044473.1' => 'oeu', 'Oeu048892.2' => 'oeu', 'Os01g0549200' => 'osa', 'Os02g0469300' => 'osa', 'Os04g0311100' => 'osa', 'Os06g0474900' => 'osa', 'Os10g0181700' => 'osa', 'Os11g0454800' => 'osa', 'Peaxi162Scf00037g00714' => 'pax', 'Peaxi162Scf00084g01217' => 'pax', 'Peaxi162Scf00257g00217' => 'pax', 'Peaxi162Scf00516g00215' => 'pax', 'Peaxi162Scf00689g00123' => 'pax', 'PGR044G2719' => 'pgr', 'PGR083G1360' => 'pgr', 'PGR102G2849' => 'pgr', 'PGR119G2534' => 'pgr', 'PGSC0003DMG400003538' => 'stu', 'PGSC0003DMG400028138' => 'stu', 'PGSC0003DMG400031732' => 'stu', 'PGSC0003DMG400038165' => 'stu', 'Phvul.002G284600' => 'pvu', 'Phvul.003G258200' => 'pvu', 'Phvul.009G176500' => 'pvu', 'Potri.003G167201' => 'ptr', 'Potri.005G118400' => 'ptr', 'Potri.012G089000' => 'ptr', 'Potri.012G102800' => 'ptr', 'Potri.015G079400' => 'ptr', 'Potri.015G100900' => 'ptr', 'Pp3c14_9810' => 'ppa', 'Pp3c15_10450' => 'ppa', 'Pp3c20_19150' => 'ppa', 'Pp3c23_12740' => 'ppa', 'Pp3c23_6310' => 'ppa', 'Pp3c24_3720' => 'ppa', 'Pp3c27_2580' => 'ppa', 'Pp3c9_8990' => 'ppa', 'PRCOL_00002854' => 'pco', 'Prupe.1G221200' => 'ppe', 'Prupe.3G289000' => 'ppe', 'Prupe.5G147000' => 'ppe', 'Prupe.6G157300' => 'ppe', 'Prupe.7G163400' => 'ppe', 'Psat0s2177g0040' => 'psa', 'Psat3g174760' => 'psa', 'Psat3g192160' => 'psa', 'Psat4g058520' => 'psa', 'Psat4g096840' => 'psa', 'Psat7g037320' => 'psa', 'PSO017G1274' => 'pso', 'PSO017G5166' => 'pso', 'PSO063G4558' => 'pso', 'PSO170G4458' => 'pso', 'PSO170G5005' => 'pso', 'PSO210G6156' => 'pso', 'PSO210G6635' => 'pso', 'PSO210G7397' => 'pso', 'PSO210G7700' => 'pso', 'PSO455G0035' => 'pso', 'PSO455G0180' => 'pso', 'PSO478G4515' => 'pso', 'PSO832G1305' => 'pso', 'PSO832G3489' => 'pso', 'QL02p075247' => 'qlo', 'QL03p051148' => 'qlo', 'QL05p010313' => 'qlo', 'QL06p034627' => 'qlo', 'QL10p001889' => 'qlo', 'QL10p010846' => 'qlo', 'RcHm_v2.0_Chr1g0350621' => 'rch', 'RcHm_v2.0_Chr1g0350641' => 'rch', 'RcHm_v2.0_Chr2g0092891' => 'rch', 'RcHm_v2.0_Chr2g0100251' => 'rch', 'RcHm_v2.0_Chr2g0158661' => 'rch', 'RcHm_v2.0_Chr2g0172741' => 'rch', 'RcHm_v2.0_Chr4g0429571' => 'rch', 'RcHm_v2.0_Chr5g0042471' => 'rch', 'RcHm_v2.0_Chr7g0189451' => 'rch', 'Rhsim08G0052000' => 'rsi', 'Rhsim08G0174400' => 'rsi', 'Rhsim08G0193200' => 'rsi', 'Rhsim10G0214800' => 'rsi', 'Rhsim10G0214900' => 'rsi', 'Rhsim10G0215000' => 'rsi', 'Rhsim12G0022900' => 'rsi', 'Rhsim12G0177500' => 'rsi', 'Rhsim12G0177700' => 'rsi', 'Sabra03G0122600' => 'sbr', 'Sabra05G0097400' => 'sbr', 'Sabra12G0064100' => 'sbr', 'Sabra15G0121300' => 'sbr', 'SalBow2G0642' => 'sbo', 'SalBow5G2667' => 'sbo', 'SalBow5G4873' => 'sbo', 'SalBow8G2395' => 'sbo', 'Sc03g0003290' => 'sci', 'Sc10g0010130' => 'sci', 'Sc22g0003650' => 'sci', 'Sed0001603' => 'sed', 'Sed0004259' => 'sed', 'Sed0006789' => 'sed', 'Sed0011838' => 'sed', 'Sed0012964' => 'sed', 'Sed0016383' => 'sed', 'Sed0019010' => 'sed', 'Sed0020188' => 'sed', 'SEGI_04702' => 'sgi', 'SEGI_17231' => 'sgi', 'SEGI_18877' => 'sgi', 'SEGI_25196' => 'sgi', 'SEGI_25515' => 'sgi', 'SEGI_28445' => 'sgi', 'SEGI_37452' => 'sgi', 'SGA_v2.0_scaffold188G40336' => 'sas', 'SGA_v2.0_scaffold228G43247' => 'sas', 'SGA_v2.0_scaffold280G46853' => 'sas', 'SGA_v2.0_scaffold34G13808' => 'sas', 'SGA_v2.0_scaffold40G15576' => 'sas', 'SGA_v2.0_scaffold611G53188' => 'sas', 'SGA_v2.0_scaffold78G25461' => 'sas', 'SGA_v2.0_scaffold90G27888' => 'sas', 'SHI08601' => 'shi', 'SHI08606' => 'shi', 'SHI17117' => 'shi', 'SHI17119' => 'shi', 'SMO118G0201' => 'smo', 'SMO169G0247' => 'smo', 'SMO176G0006' => 'smo', 'SMO176G0015' => 'smo', 'SMO202G0006' => 'smo', 'SMO240G0050' => 'smo', 'SMO286G0009' => 'smo', 'SMO338G0033' => 'smo', 'SMO356G0533' => 'smo', 'SMO364G0382' => 'smo', 'SMO367G0166' => 'smo', 'SMO367G1098' => 'smo', 'Solyc01g009920.3' => 'sly', 'Solyc01g099300.3' => 'sly', 'Solyc02g084700.3' => 'sly', 'Solyc03g097520.3' => 'sly', 'Solyc06g071580.3' => 'sly', 'Solyc10g081760.3' => 'sly', 'Sopen01g005480' => 'spe', 'Sopen01g042850' => 'spe', 'Sopen02g029370' => 'spe', 'Sopen03g028280' => 'spe', 'Sopen06g027870' => 'spe', 'Sopen10g032270' => 'spe', 'Sp5g18180' => 'spa', 'Sp6g12880' => 'spa', 'Sp6g30850' => 'spa', 'Sp7g22960' => 'spa', 'Sp7g34010' => 'spa', 'SpUn1326_0010' => 'spa', 'TAR371G0242' => 'tar', 'TAR622G0638' => 'tar', 'TAR628G1548' => 'tar', 'TAR629G1079' => 'tar', 'TAR629G3413' => 'tar', 'THA.LOC104804249' => 'tha', 'THA.LOC104808315' => 'tha', 'THA.LOC104809238' => 'tha', 'THA.LOC104825484' => 'tha', 'Thecc.01G025500' => 'tca', 'Thecc.03G015800' => 'tca', 'Thecc.03G018000' => 'tca', 'Thecc.03G134800' => 'tca', 'Thecc.04G014700' => 'tca', 'Thhalv10006991m.g' => 'esa', 'Thhalv10012707m.g' => 'esa', 'Thhalv10015739m.g' => 'esa', 'Thhalv10024553m.g' => 'esa', 'Thhalv10024673m.g' => 'esa', 'Thhalv10029187m.g' => 'esa', 'TPR.G12971' => 'tpr', 'TPR.G29396' => 'tpr', 'TPR.G33376' => 'tpr', 'TPR.G35508' => 'tpr', 'TPR.G35516' => 'tpr', 'TPR.G37317' => 'tpr', 'TPR.G37389' => 'tpr', 'TPR.G37523' => 'tpr', 'TPR.G559' => 'tpr', 'TWI14G0070' => 'twi', 'TWI14G0729' => 'twi', 'TWI18G0596' => 'twi', 'TWI39G0780' => 'twi', 'TWI39G0850' => 'twi', 'TWI73G1052' => 'twi', 'unitig_52.g17485' => 'ugi', 'unitig_61.g26355' => 'ugi', 'vmacro01040' => 'vma', 'vmacro16731' => 'vma', 'vmacro18270' => 'vma', 'vmacro19142' => 'vma', 'vmacro19407' => 'vma', 'vmacro19408' => 'vma', 'vmacro21899' => 'vma', 'vmacro21900' => 'vma', 'vmacro21901' => 'vma', 'VMungo0251G0490' => 'vmu', 'VMungo0251G1748' => 'vmu', 'VMungo1309G0421' => 'vmu', 'Zm00001eb086500' => 'zma', 'Zm00001eb150680' => 'zma', 'Zm00001eb162330' => 'zma', 'Zm00001eb203130' => 'zma', 'Zm00001eb369480' => 'zma', 'Zm00001eb382340' => 'zma', 'Zm00001eb416360' => 'zma' ), 'gf_id' => 'HOM05D000902', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000902' ), 'data_identifier' => 'HOM05D000902', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000902', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '663', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02470' => 'bna', 'A01p16260' => 'bna', 'A02p01680' => 'bna', 'A03p16600' => 'bna', 'A03p55660' => 'bna', 'A03p64160' => 'bna', 'A03p64170' => 'bna', 'A08p31900' => 'bna', 'A09p59530' => 'bna', 'A10p08230' => 'bna', 'A10p25090' => 'bna', 'Aa31LG3G7100' => 'aar', 'Aa31LG3G7110' => 'aar', 'Aa31LG6G13160' => 'aar', 'Aa31LG7G10770' => 'aar', 'Aa31LG7G3830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2723' => 'aag', 'Actinidia08045' => 'ach', 'Actinidia08888' => 'ach', 'Actinidia18333' => 'ach', 'Actinidia19334' => 'ach', 'Actinidia25552' => 'ach', 'Actinidia26089' => 'ach', 'Actinidia30615' => 'ach', 'Actinidia30616' => 'ach', 'Actinidia33083' => 'ach', 'Actinidia35762' => 'ach', 'Ah.02g110620' => 'amhyb', 'Ah.11g046390' => 'amhyb', 'AL1G31670' => 'aly', 'AL6G23730' => 'aly', 'AL7G14740' => 'aly', 'AL7G14750' => 'aly', 'AL7G14760' => 'aly', 'AL7G28220' => 'aly', 'AL8G24940' => 'aly', 'Aqoxy3G01665' => 'aox', 'Aqoxy3G02853' => 'aox', 'Aqoxy5G01513' => 'aox', 'Aqoxy5G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8SKA4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ75LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKDA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0LJZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7REX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZP4YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWX7I5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2QKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS0L9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPCD8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q161UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC7XCF' => 'arhy', 'AT1G19100' => 'ath', 'AT4G24970' => 'ath', 'AT4G36270' => 'ath', 'AT4G36280' => 'ath', 'AT4G36290' => 'ath', 'AT5G13130' => 'ath', 'AT5G50780' => 'ath', 'ATR0582G266' => 'atr', 'ATR0661G195' => 'atr', 'ATR1152G031' => 'atr', 'Atru.chr11.2382' => 'acertr', 'Atru.chr12.2337' => 'acertr', 'Atru.chr3.744' => 'acertr', 'Atru.chr6.1870' => 'acertr', 'Atru.chr9.2515' => 'acertr', 'AUR62004120' => 'cqu', 'AUR62005667' => 'cqu', 'AUR62007634' => 'cqu', 'AUR62008186' => 'cqu', 'AUR62008187' => 'cqu', 'AUR62008188' => 'cqu', 'AUR62027954' => 'cqu', 'AUR62028766' => 'cqu', 'AUR62028767' => 'cqu', 'AUR62028768' => 'cqu', 'AUR62028886' => 'cqu', 'AUR62029563' => 'cqu', 'AUR62038832' => 'cqu', 'BcaB01g04149' => 'bca', 'BcaB03g12940' => 'bca', 'BcaB03g13090' => 'bca', 'BcaB03g14466' => 'bca', 'BcaB05g24035' => 'bca', 'BcaC01g06050' => 'bca', 'BcaC04g19148' => 'bca', 'BcaC04g20761' => 'bca', 'BcaC06g32845' => 'bca', 'BcaC07g41274' => 'bca', 'BcaC09g50827' => 'bca', 'BcaNung00741' => 'bca', 'BcaNung00742' => 'bca', 'BcaNung01859' => 'bca', 'BcaNung03985' => 'bca', 'BcaNung03989' => 'bca', 'BcaNung05661' => 'bca', 'BolC1t00257H' => 'bol', 'BolC1t01956H' => 'bol', 'BolC2t06534H' => 'bol', 'BolC3t14334H' => 'bol', 'BolC5t30451H' => 'bol', 'BolC7t45880H' => 'bol', 'BolC7t46586H' => 'bol', 'BolC8t49301H' => 'bol', 'BolC8t51837H' => 'bol', 'BolC9t56822H' => 'bol', 'BolC9t59235H' => 'bol', 'BraA01t00234Z' => 'bra', 'BraA01t01563Z' => 'bra', 'BraA02t05147Z' => 'bra', 'BraA03t10947Z' => 'bra', 'BraA03t14633Z' => 'bra', 'BraA08t35112Z' => 'bra', 'BraA09t41330Z' => 'bra', 'BraA10t44570Z' => 'bra', 'C01p02670' => 'bna', 'C01p20260' => 'bna', 'C02p05890' => 'bna', 'C03p19530' => 'bna', 'C05p17470' => 'bna', 'C07p53900' => 'bna', 'C07p61630' => 'bna', 'C08p16800' => 'bna', 'C08p42810' => 'bna', 'C09p39480' => 'bna', 'C09p63980' => 'bna', 'CAN.G1001.7' => 'can', 'CAN.G1034.55' => 'can', 'CAN.G143.7' => 'can', 'CAN.G3340.1' => 'can', 'CAN.G358.19' => 'can', 'CAN.G373.2' => 'can', 'CAN.G674.16' => 'can', 'CAN.G674.17' => 'can', 'CAN.G674.18' => 'can', 'CAN.G732.2' => 'can', 'CAN.G732.3' => 'can', 'CAN.G993.39' => 'can', 'CANSAT01G2052' => 'cansat', 'CANSAT80G0070' => 'cansat', 'CANSAT80G0483' => 'cansat', 'CANSAT80G0625' => 'cansat', 'CARHR019690' => 'chi', 'CARHR080280' => 'chi', 'CARHR152750' => 'chi', 'CARHR152760' => 'chi', 'CARHR152770' => 'chi', 'CARHR200340' => 'chi', 'CARHR232370' => 'chi', 'CARHR244670' => 'chi', 'CARHR244680' => 'chi', 'CARHR257520' => 'chi', 'Carub.0001s1872' => 'cru', 'Carub.0006s1130' => 'cru', 'Carub.0007s0396' => 'cru', 'Carub.0007s0397' => 'cru', 'Carub.0007s1608' => 'cru', 'Carub.0008s1068' => 'cru', 'Carub.0008s1077' => 'cru', 'Ca_16158_v3' => 'car', 'Ca_17571_v3' => 'car', 'Ca_21936_v3' => 'car', 'Ca_22350_v3' => 'car', 'CBR_g22445' => 'cbr', 'CBR_g26290' => 'cbr', 'Cc04_g09610' => 'ccan', 'Cc04_g12280' => 'ccan', 'Cc07_g10230' => 'ccan', 'CDE02G0093' => 'cde', 'CDE02G0701' => 'cde', 'CDE04G1050' => 'cde', 'CDE05G1833' => 'cde', 'CDE05G3058' => 'cde', 'CDE05G3380' => 'cde', 'CDE06G0536' => 'cde', 'Cfa006923' => 'cfa', 'Cfa009402' => 'cfa', 'Cfa018751' => 'cfa', 'Cfa019164' => 'cfa', 'Cfa022935' => 'cfa', 'Ciclev10019081m.g' => 'ccl', 'Ciclev10025076m.g' => 'ccl', 'Ciclev10030712m.g' => 'ccl', 'Ciclev10033760m.g' => 'ccl', 'CiPaw.05G105600' => 'cil', 'CiPaw.08G136700' => 'cil', 'CiPaw.11G003900' => 'cil', 'CiPaw.11G023700' => 'cil', 'CiPaw.12G003700' => 'cil', 'ClCG06G017100' => 'cla', 'ClCG06G018110' => 'cla', 'ClCG07G008800' => 'cla', 'ClCG07G015330' => 'cla', 'COL.COLO4_13698' => 'col', 'COL.COLO4_16659' => 'col', 'COL.COLO4_21986' => 'col', 'COL.COLO4_24049' => 'col', 'COL.COLO4_29061' => 'col', 'COL.COLO4_29075' => 'col', 'COL.COLO4_30094' => 'col', 'Cpa.g.c33689' => 'cpa', 'Cpa.g.sc108.39' => 'cpa', 'Cpa.g.sc108.41' => 'cpa', 'Cpa.g.sc1163.1' => 'cpa', 'Cpa.g.sc4.155' => 'cpa', 'Cpa.g.sc6.194' => 'cpa', 'CsaV3_1G000340' => 'csa', 'CsaV3_1G001400' => 'csa', 'CsaV3_4G002220' => 'csa', 'CsaV3_4G005370' => 'csa', 'CSS0007487' => 'camsi', 'CSS0008066' => 'camsi', 'CSS0009120' => 'camsi', 'CSS0015512' => 'camsi', 'CSS0022409' => 'camsi', 'CSS0025358' => 'camsi', 'CSS0044547' => 'camsi', 'DCAR_013057' => 'dca', 'DCAR_015058' => 'dca', 'DCAR_016027' => 'dca', 'DCAR_017327' => 'dca', 'DCAR_020743' => 'dca', 'DCAR_026157' => 'dca', 'DCAR_032339' => 'dca', 'DCAR_032340' => 'dca', 'Dinv11200' => 'din', 'Dinv11201' => 'din', 'Dinv20631' => 'din', 'Dinv23182' => 'din', 'Dinv33466' => 'din', 'Dinv33583' => 'din', 'Dinv38565' => 'din', 'Duzib068G0200' => 'dzi', 'Duzib147G0132' => 'dzi', 'Duzib147G0635' => 'dzi', 'Duzib205G1670' => 'dzi', 'Duzib251G0606' => 'dzi', 'ECA232G3336' => 'eca', 'ECA232G3763' => 'eca', 'ECA232G4845' => 'eca', 'ECA234G1607' => 'eca', 'ECA246G0932' => 'eca', 'ECA247G0781' => 'eca', 'ECA247G1932' => 'eca', 'ECA247G2079' => 'eca', 'ECA247G3338' => 'eca', 'ECA247G4115' => 'eca', 'EL10Ac3g06552' => 'bvu', 'EL10Ac5g10721' => 'bvu', 'EL10Ac5g10722' => 'bvu', 'EL10Ac5g10723' => 'bvu', 'EL10Ac5g11361' => 'bvu', 'EL10Ac6g13553' => 'bvu', 'EL10As8g23872' => 'bvu', 'Eucgr.B00250' => 'egr', 'Eucgr.B00251' => 'egr', 'Eucgr.B03533' => 'egr', 'Eucgr.I02381' => 'egr', 'Eucgr.K02700' => 'egr', 'FAN02G0174' => 'fan', 'FAN02G3146' => 'fan', 'FAN04G1672' => 'fan', 'FAN04G2273' => 'fan', 'FAN05G2791' => 'fan', 'FAN05G4035' => 'fan', 'FAN07G0834' => 'fan', 'FAN08G1198' => 'fan', 'FAN09G4182' => 'fan', 'FAN12G0496' => 'fan', 'FAN13G1027' => 'fan', 'FAN13G2951' => 'fan', 'FAN14G0705' => 'fan', 'FAN14G0720' => 'fan', 'FAN17G0201' => 'fan', 'FAN17G2665' => 'fan', 'FAN18G1456' => 'fan', 'FAN18G1525' => 'fan', 'FAN18G3500' => 'fan', 'FAN28G2670' => 'fan', 'FvH4_1g12391' => 'fve', 'FvH4_4g23220' => 'fve', 'FvH4_5g08810' => 'fve', 'FvH4_5g28960' => 'fve', 'FvH4_6g42820' => 'fve', 'FvH4_6g51110' => 'fve', 'Glyma.02G051802' => 'gma', 'Glyma.04G185300' => 'gma', 'Glyma.05G202900' => 'gma', 'Glyma.08G010300' => 'gma', 'Glyma.16G131900' => 'gma', 'Glyma.17G087900' => 'gma', 'Gohir.A07G048600' => 'ghi', 'Gohir.A11G179000' => 'ghi', 'Gohir.A12G140900' => 'ghi', 'Gohir.A12G140950' => 'ghi', 'Gohir.A12G191700' => 'ghi', 'Gohir.A13G086300' => 'ghi', 'Gohir.D07G052900' => 'ghi', 'Gohir.D11G186600' => 'ghi', 'Gohir.D12G145575' => 'ghi', 'Gohir.D12G145650' => 'ghi', 'Gohir.D12G145725' => 'ghi', 'Gohir.D12G194050' => 'ghi', 'Gohir.D13G091800' => 'ghi', 'Gorai.001G055900' => 'gra', 'Gorai.007G198400' => 'gra', 'Gorai.008G157000' => 'gra', 'Gorai.008G157100' => 'gra', 'Gorai.008G208700' => 'gra', 'Gorai.010G138700' => 'gra', 'GSVIVG01000977001' => 'vvi', 'GSVIVG01007708001' => 'vvi', 'GSVIVG01008587001' => 'vvi', 'GSVIVG01018849001' => 'vvi', 'GSVIVG01032432001' => 'vvi', 'HanXRQChr02g0034131' => 'han', 'HanXRQChr02g0035981' => 'han', 'HanXRQChr02g0035991' => 'han', 'HanXRQChr05g0155611' => 'han', 'HanXRQChr05g0155621' => 'han', 'HanXRQChr08g0236501' => 'han', 'HanXRQChr09g0261321' => 'han', 'HanXRQChr09g0272081' => 'han', 'HanXRQChr10g0310741' => 'han', 'HanXRQChr11g0325591' => 'han', 'HanXRQChr12g0385691' => 'han', 'HanXRQChr13g0387801' => 'han', 'HanXRQChr15g0463011' => 'han', 'Haze_03826' => 'cav', 'Haze_03827' => 'cav', 'Haze_07183' => 'cav', 'Haze_07537' => 'cav', 'Haze_07539' => 'cav', 'Haze_12461' => 'cav', 'Haze_16115' => 'cav', 'Haze_16808' => 'cav', 'Haze_18531' => 'cav', 'Hma1.2p1_0046F.1_g026700' => 'hma', 'Hma1.2p1_0046F.1_g026710' => 'hma', 'Hma1.2p1_0168F.1_g074340' => 'hma', 'Hma1.2p1_0266F.1_g107030' => 'hma', 'Hma1.2p1_0266F.1_g107060' => 'hma', 'Hma1.2p1_0275F.1_g110510' => 'hma', 'Hma1.2p1_0592F.1_g185490' => 'hma', 'Hma1.2p1_0592F.1_g185500' => 'hma', 'Hma1.2p1_0592F.1_g185510' => 'hma', 'Hma1.2p1_0592F.1_g185520' => 'hma', 'Hma1.2p1_0592F.1_g185530' => 'hma', 'Hma1.2p1_0818F.1_g223450' => 'hma', 'HPP92_009708' => 'vpl', 'HPP92_009793' => 'vpl', 'HPP92_009796' => 'vpl', 'HPP92_009797' => 'vpl', 'HPP92_014940' => 'vpl', 'HPP92_014988' => 'vpl', 'Hund02463' => 'sun', 'Hund02760' => 'sun', 'Hund05071' => 'sun', 'Hund10108' => 'sun', 'Hund11204' => 'sun', 'Hund14016' => 'sun', 'Hund16464' => 'sun', 'Lalb_Chr09g0333391' => 'lal', 'Lalb_Chr11g0070461' => 'lal', 'Lalb_Chr12g0201671' => 'lal', 'Lalb_Chr13g0297161' => 'lal', 'Lj1g0002823' => 'lja', 'Lj3C1074T6' => 'lonja', 'Lj4A212T28' => 'lonja', 'Lj4g0005516' => 'lja', 'Lj4g0013705' => 'lja', 'Lj4g0027865' => 'lja', 'Lj5C92G16' => 'lonja', 'Lj5C92T12' => 'lonja', 'Lj7C596T3' => 'lonja', 'Lj9A446G59' => 'lonja', 'Lj9A482G21' => 'lonja', 'Lsat_1_v5_gn_1_28261' => 'lsa', 'Lsat_1_v5_gn_1_28281' => 'lsa', 'Lsat_1_v5_gn_1_32721' => 'lsa', 'Lsat_1_v5_gn_4_151760' => 'lsa', 'Lsat_1_v5_gn_4_2120' => 'lsa', 'Lsat_1_v5_gn_4_75761' => 'lsa', 'Lsat_1_v5_gn_5_10920' => 'lsa', 'Manes.02G099900' => 'mes', 'Manes.11G096200' => 'mes', 'Manes.12G007200' => 'mes', 'Manes.14G048300' => 'mes', 'Manes.17G114700' => 'mes', 'Mapoly0002s0070' => 'mpo', 'Mapoly0029s0099' => 'mpo', 'MBI07_g24742_MAGBIO' => 'mbi', 'MBI10_g27988_MAGBIO' => 'mbi', 'MBI11_g13057_MAGBIO' => 'mbi', 'MD02G1137200' => 'mdo', 'MD06G1137200' => 'mdo', 'MD07G1122300' => 'mdo', 'MD09G1078200' => 'mdo', 'MD13G1123700' => 'mdo', 'MD14G1151900' => 'mdo', 'MD17G1030900' => 'mdo', 'MD17G1068200' => 'mdo', 'MD17G1068600' => 'mdo', 'Medtr3g077540' => 'mtr', 'Medtr4g105530' => 'mtr', 'Medtr8g076580' => 'mtr', 'Medtr8g076590' => 'mtr', 'Medtr8g096410' => 'mtr', 'MELO3C016411.2' => 'cme', 'MELO3C017780.2' => 'cme', 'MELO3C022560.2' => 'cme', 'MELO3C026187.2' => 'cme', 'MELO3C026286.2' => 'cme', 'MELO3C032854.2' => 'cme', 'Migut.H02495' => 'egut', 'Migut.I00561' => 'egut', 'Migut.K01015' => 'egut', 'Migut.K01016' => 'egut', 'Migut.L00743' => 'egut', 'Migut.L00744' => 'egut', 'Migut.L00746' => 'egut', 'Migut.L00798' => 'egut', 'Migut.L00799' => 'egut', 'Migut.N02096' => 'egut', 'MSTRG.11259' => 'ama', 'MSTRG.23142' => 'ama', 'MSTRG.2499' => 'ama', 'Nitab4.5_0000003g0730' => 'nta', 'Nitab4.5_0000137g0020' => 'nta', 'Nitab4.5_0000721g0210' => 'nta', 'Nitab4.5_0000723g0050' => 'nta', 'Nitab4.5_0000913g0070' => 'nta', 'Nitab4.5_0001332g0040' => 'nta', 'Nitab4.5_0001771g0050' => 'nta', 'Nitab4.5_0001918g0050' => 'nta', 'Nitab4.5_0002686g0030' => 'nta', 'Nitab4.5_0003156g0020' => 'nta', 'Nitab4.5_0003383g0040' => 'nta', 'Nitab4.5_0003918g0010' => 'nta', 'Nitab4.5_0006760g0010' => 'nta', 'Nn1g05981' => 'nnu', 'Nn1g06288' => 'nnu', 'Nn3g16371' => 'nnu', 'Nn3g16786' => 'nnu', 'Nn4g22232' => 'nnu', 'Oeu005144.1' => 'oeu', 'Oeu005145.1' => 'oeu', 'Oeu011348.1' => 'oeu', 'Oeu016415.1' => 'oeu', 'Oeu023501.1' => 'oeu', 'Oeu044473.1' => 'oeu', 'Oeu048892.2' => 'oeu', 'Os01g0549200' => 'osa', 'Os02g0469300' => 'osa', 'Os04g0311100' => 'osa', 'Os06g0474900' => 'osa', 'Os10g0181700' => 'osa', 'Os11g0454800' => 'osa', 'Peaxi162Scf00037g00714' => 'pax', 'Peaxi162Scf00084g01217' => 'pax', 'Peaxi162Scf00257g00217' => 'pax', 'Peaxi162Scf00516g00215' => 'pax', 'Peaxi162Scf00689g00123' => 'pax', 'PGR044G2719' => 'pgr', 'PGR083G1360' => 'pgr', 'PGR102G2849' => 'pgr', 'PGR119G2534' => 'pgr', 'PGSC0003DMG400003538' => 'stu', 'PGSC0003DMG400028138' => 'stu', 'PGSC0003DMG400031732' => 'stu', 'PGSC0003DMG400038165' => 'stu', 'Phvul.002G284600' => 'pvu', 'Phvul.003G258200' => 'pvu', 'Phvul.009G176500' => 'pvu', 'Potri.003G167201' => 'ptr', 'Potri.005G118400' => 'ptr', 'Potri.012G089000' => 'ptr', 'Potri.012G102800' => 'ptr', 'Potri.015G079400' => 'ptr', 'Potri.015G100900' => 'ptr', 'Pp3c14_9810' => 'ppa', 'Pp3c15_10450' => 'ppa', 'Pp3c20_19150' => 'ppa', 'Pp3c23_12740' => 'ppa', 'Pp3c23_6310' => 'ppa', 'Pp3c24_3720' => 'ppa', 'Pp3c27_2580' => 'ppa', 'Pp3c9_8990' => 'ppa', 'PRCOL_00002854' => 'pco', 'Prupe.1G221200' => 'ppe', 'Prupe.3G289000' => 'ppe', 'Prupe.5G147000' => 'ppe', 'Prupe.6G157300' => 'ppe', 'Prupe.7G163400' => 'ppe', 'Psat0s2177g0040' => 'psa', 'Psat3g174760' => 'psa', 'Psat3g192160' => 'psa', 'Psat4g058520' => 'psa', 'Psat4g096840' => 'psa', 'Psat7g037320' => 'psa', 'PSO017G1274' => 'pso', 'PSO017G5166' => 'pso', 'PSO063G4558' => 'pso', 'PSO170G4458' => 'pso', 'PSO170G5005' => 'pso', 'PSO210G6156' => 'pso', 'PSO210G6635' => 'pso', 'PSO210G7397' => 'pso', 'PSO210G7700' => 'pso', 'PSO455G0035' => 'pso', 'PSO455G0180' => 'pso', 'PSO478G4515' => 'pso', 'PSO832G1305' => 'pso', 'PSO832G3489' => 'pso', 'QL02p075247' => 'qlo', 'QL03p051148' => 'qlo', 'QL05p010313' => 'qlo', 'QL06p034627' => 'qlo', 'QL10p001889' => 'qlo', 'QL10p010846' => 'qlo', 'RcHm_v2.0_Chr1g0350621' => 'rch', 'RcHm_v2.0_Chr1g0350641' => 'rch', 'RcHm_v2.0_Chr2g0092891' => 'rch', 'RcHm_v2.0_Chr2g0100251' => 'rch', 'RcHm_v2.0_Chr2g0158661' => 'rch', 'RcHm_v2.0_Chr2g0172741' => 'rch', 'RcHm_v2.0_Chr4g0429571' => 'rch', 'RcHm_v2.0_Chr5g0042471' => 'rch', 'RcHm_v2.0_Chr7g0189451' => 'rch', 'Rhsim08G0052000' => 'rsi', 'Rhsim08G0174400' => 'rsi', 'Rhsim08G0193200' => 'rsi', 'Rhsim10G0214800' => 'rsi', 'Rhsim10G0214900' => 'rsi', 'Rhsim10G0215000' => 'rsi', 'Rhsim12G0022900' => 'rsi', 'Rhsim12G0177500' => 'rsi', 'Rhsim12G0177700' => 'rsi', 'Sabra03G0122600' => 'sbr', 'Sabra05G0097400' => 'sbr', 'Sabra12G0064100' => 'sbr', 'Sabra15G0121300' => 'sbr', 'SalBow2G0642' => 'sbo', 'SalBow5G2667' => 'sbo', 'SalBow5G4873' => 'sbo', 'SalBow8G2395' => 'sbo', 'Sc03g0003290' => 'sci', 'Sc10g0010130' => 'sci', 'Sc22g0003650' => 'sci', 'Sed0001603' => 'sed', 'Sed0004259' => 'sed', 'Sed0006789' => 'sed', 'Sed0011838' => 'sed', 'Sed0012964' => 'sed', 'Sed0016383' => 'sed', 'Sed0019010' => 'sed', 'Sed0020188' => 'sed', 'SEGI_04702' => 'sgi', 'SEGI_17231' => 'sgi', 'SEGI_18877' => 'sgi', 'SEGI_25196' => 'sgi', 'SEGI_25515' => 'sgi', 'SEGI_28445' => 'sgi', 'SEGI_37452' => 'sgi', 'SGA_v2.0_scaffold188G40336' => 'sas', 'SGA_v2.0_scaffold228G43247' => 'sas', 'SGA_v2.0_scaffold280G46853' => 'sas', 'SGA_v2.0_scaffold34G13808' => 'sas', 'SGA_v2.0_scaffold40G15576' => 'sas', 'SGA_v2.0_scaffold611G53188' => 'sas', 'SGA_v2.0_scaffold78G25461' => 'sas', 'SGA_v2.0_scaffold90G27888' => 'sas', 'SHI08601' => 'shi', 'SHI08606' => 'shi', 'SHI17117' => 'shi', 'SHI17119' => 'shi', 'SMO118G0201' => 'smo', 'SMO169G0247' => 'smo', 'SMO176G0006' => 'smo', 'SMO176G0015' => 'smo', 'SMO202G0006' => 'smo', 'SMO240G0050' => 'smo', 'SMO286G0009' => 'smo', 'SMO338G0033' => 'smo', 'SMO356G0533' => 'smo', 'SMO364G0382' => 'smo', 'SMO367G0166' => 'smo', 'SMO367G1098' => 'smo', 'Solyc01g009920.3' => 'sly', 'Solyc01g099300.3' => 'sly', 'Solyc02g084700.3' => 'sly', 'Solyc03g097520.3' => 'sly', 'Solyc06g071580.3' => 'sly', 'Solyc10g081760.3' => 'sly', 'Sopen01g005480' => 'spe', 'Sopen01g042850' => 'spe', 'Sopen02g029370' => 'spe', 'Sopen03g028280' => 'spe', 'Sopen06g027870' => 'spe', 'Sopen10g032270' => 'spe', 'Sp5g18180' => 'spa', 'Sp6g12880' => 'spa', 'Sp6g30850' => 'spa', 'Sp7g22960' => 'spa', 'Sp7g34010' => 'spa', 'SpUn1326_0010' => 'spa', 'TAR371G0242' => 'tar', 'TAR622G0638' => 'tar', 'TAR628G1548' => 'tar', 'TAR629G1079' => 'tar', 'TAR629G3413' => 'tar', 'THA.LOC104804249' => 'tha', 'THA.LOC104808315' => 'tha', 'THA.LOC104809238' => 'tha', 'THA.LOC104825484' => 'tha', 'Thecc.01G025500' => 'tca', 'Thecc.03G015800' => 'tca', 'Thecc.03G018000' => 'tca', 'Thecc.03G134800' => 'tca', 'Thecc.04G014700' => 'tca', 'Thhalv10006991m.g' => 'esa', 'Thhalv10012707m.g' => 'esa', 'Thhalv10015739m.g' => 'esa', 'Thhalv10024553m.g' => 'esa', 'Thhalv10024673m.g' => 'esa', 'Thhalv10029187m.g' => 'esa', 'TPR.G12971' => 'tpr', 'TPR.G29396' => 'tpr', 'TPR.G33376' => 'tpr', 'TPR.G35508' => 'tpr', 'TPR.G35516' => 'tpr', 'TPR.G37317' => 'tpr', 'TPR.G37389' => 'tpr', 'TPR.G37523' => 'tpr', 'TPR.G559' => 'tpr', 'TWI14G0070' => 'twi', 'TWI14G0729' => 'twi', 'TWI18G0596' => 'twi', 'TWI39G0780' => 'twi', 'TWI39G0850' => 'twi', 'TWI73G1052' => 'twi', 'unitig_52.g17485' => 'ugi', 'unitig_61.g26355' => 'ugi', 'vmacro01040' => 'vma', 'vmacro16731' => 'vma', 'vmacro18270' => 'vma', 'vmacro19142' => 'vma', 'vmacro19407' => 'vma', 'vmacro19408' => 'vma', 'vmacro21899' => 'vma', 'vmacro21900' => 'vma', 'vmacro21901' => 'vma', 'VMungo0251G0490' => 'vmu', 'VMungo0251G1748' => 'vmu', 'VMungo1309G0421' => 'vmu', 'Zm00001eb086500' => 'zma', 'Zm00001eb150680' => 'zma', 'Zm00001eb162330' => 'zma', 'Zm00001eb203130' => 'zma', 'Zm00001eb369480' => 'zma', 'Zm00001eb382340' => 'zma', 'Zm00001eb416360' => 'zma' ) $gf_id = 'HOM05D000902' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000902' ) $data_identifier = 'HOM05D000902' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 13, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 10, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 6, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 9, 'hma' => (int) 12, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 4, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 6, 'ppa' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 6, 'rch' => (int) 9, 'rsi' => (int) 9, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 12, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 3, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416360' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000902', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '663', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02470' => 'bna', 'A01p16260' => 'bna', 'A02p01680' => 'bna', 'A03p16600' => 'bna', 'A03p55660' => 'bna', 'A03p64160' => 'bna', 'A03p64170' => 'bna', 'A08p31900' => 'bna', 'A09p59530' => 'bna', 'A10p08230' => 'bna', 'A10p25090' => 'bna', 'Aa31LG3G7100' => 'aar', 'Aa31LG3G7110' => 'aar', 'Aa31LG6G13160' => 'aar', 'Aa31LG7G10770' => 'aar', 'Aa31LG7G3830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2723' => 'aag', 'Actinidia08045' => 'ach', 'Actinidia08888' => 'ach', 'Actinidia18333' => 'ach', 'Actinidia19334' => 'ach', 'Actinidia25552' => 'ach', 'Actinidia26089' => 'ach', 'Actinidia30615' => 'ach', 'Actinidia30616' => 'ach', 'Actinidia33083' => 'ach', 'Actinidia35762' => 'ach', 'Ah.02g110620' => 'amhyb', 'Ah.11g046390' => 'amhyb', 'AL1G31670' => 'aly', 'AL6G23730' => 'aly', 'AL7G14740' => 'aly', 'AL7G14750' => 'aly', 'AL7G14760' => 'aly', 'AL7G28220' => 'aly', 'AL8G24940' => 'aly', 'Aqoxy3G01665' => 'aox', 'Aqoxy3G02853' => 'aox', 'Aqoxy5G01513' => 'aox', 'Aqoxy5G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8SKA4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ75LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKDA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0LJZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7REX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZP4YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWX7I5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2QKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS0L9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPCD8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q161UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC7XCF' => 'arhy', 'AT1G19100' => 'ath', 'AT4G24970' => 'ath', 'AT4G36270' => 'ath', 'AT4G36280' => 'ath', 'AT4G36290' => 'ath', 'AT5G13130' => 'ath', 'AT5G50780' => 'ath', 'ATR0582G266' => 'atr', 'ATR0661G195' => 'atr', 'ATR1152G031' => 'atr', 'Atru.chr11.2382' => 'acertr', 'Atru.chr12.2337' => 'acertr', 'Atru.chr3.744' => 'acertr', 'Atru.chr6.1870' => 'acertr', 'Atru.chr9.2515' => 'acertr', 'AUR62004120' => 'cqu', 'AUR62005667' => 'cqu', 'AUR62007634' => 'cqu', 'AUR62008186' => 'cqu', 'AUR62008187' => 'cqu', 'AUR62008188' => 'cqu', 'AUR62027954' => 'cqu', 'AUR62028766' => 'cqu', 'AUR62028767' => 'cqu', 'AUR62028768' => 'cqu', 'AUR62028886' => 'cqu', 'AUR62029563' => 'cqu', 'AUR62038832' => 'cqu', 'BcaB01g04149' => 'bca', 'BcaB03g12940' => 'bca', 'BcaB03g13090' => 'bca', 'BcaB03g14466' => 'bca', 'BcaB05g24035' => 'bca', 'BcaC01g06050' => 'bca', 'BcaC04g19148' => 'bca', 'BcaC04g20761' => 'bca', 'BcaC06g32845' => 'bca', 'BcaC07g41274' => 'bca', 'BcaC09g50827' => 'bca', 'BcaNung00741' => 'bca', 'BcaNung00742' => 'bca', 'BcaNung01859' => 'bca', 'BcaNung03985' => 'bca', 'BcaNung03989' => 'bca', 'BcaNung05661' => 'bca', 'BolC1t00257H' => 'bol', 'BolC1t01956H' => 'bol', 'BolC2t06534H' => 'bol', 'BolC3t14334H' => 'bol', 'BolC5t30451H' => 'bol', 'BolC7t45880H' => 'bol', 'BolC7t46586H' => 'bol', 'BolC8t49301H' => 'bol', 'BolC8t51837H' => 'bol', 'BolC9t56822H' => 'bol', 'BolC9t59235H' => 'bol', 'BraA01t00234Z' => 'bra', 'BraA01t01563Z' => 'bra', 'BraA02t05147Z' => 'bra', 'BraA03t10947Z' => 'bra', 'BraA03t14633Z' => 'bra', 'BraA08t35112Z' => 'bra', 'BraA09t41330Z' => 'bra', 'BraA10t44570Z' => 'bra', 'C01p02670' => 'bna', 'C01p20260' => 'bna', 'C02p05890' => 'bna', 'C03p19530' => 'bna', 'C05p17470' => 'bna', 'C07p53900' => 'bna', 'C07p61630' => 'bna', 'C08p16800' => 'bna', 'C08p42810' => 'bna', 'C09p39480' => 'bna', 'C09p63980' => 'bna', 'CAN.G1001.7' => 'can', 'CAN.G1034.55' => 'can', 'CAN.G143.7' => 'can', 'CAN.G3340.1' => 'can', 'CAN.G358.19' => 'can', 'CAN.G373.2' => 'can', 'CAN.G674.16' => 'can', 'CAN.G674.17' => 'can', 'CAN.G674.18' => 'can', 'CAN.G732.2' => 'can', 'CAN.G732.3' => 'can', 'CAN.G993.39' => 'can', 'CANSAT01G2052' => 'cansat', 'CANSAT80G0070' => 'cansat', 'CANSAT80G0483' => 'cansat', 'CANSAT80G0625' => 'cansat', 'CARHR019690' => 'chi', 'CARHR080280' => 'chi', 'CARHR152750' => 'chi', 'CARHR152760' => 'chi', 'CARHR152770' => 'chi', 'CARHR200340' => 'chi', 'CARHR232370' => 'chi', 'CARHR244670' => 'chi', 'CARHR244680' => 'chi', 'CARHR257520' => 'chi', 'Carub.0001s1872' => 'cru', 'Carub.0006s1130' => 'cru', 'Carub.0007s0396' => 'cru', 'Carub.0007s0397' => 'cru', 'Carub.0007s1608' => 'cru', 'Carub.0008s1068' => 'cru', 'Carub.0008s1077' => 'cru', 'Ca_16158_v3' => 'car', 'Ca_17571_v3' => 'car', 'Ca_21936_v3' => 'car', 'Ca_22350_v3' => 'car', 'CBR_g22445' => 'cbr', 'CBR_g26290' => 'cbr', 'Cc04_g09610' => 'ccan', 'Cc04_g12280' => 'ccan', 'Cc07_g10230' => 'ccan', 'CDE02G0093' => 'cde', 'CDE02G0701' => 'cde', 'CDE04G1050' => 'cde', 'CDE05G1833' => 'cde', 'CDE05G3058' => 'cde', 'CDE05G3380' => 'cde', 'CDE06G0536' => 'cde', 'Cfa006923' => 'cfa', 'Cfa009402' => 'cfa', 'Cfa018751' => 'cfa', 'Cfa019164' => 'cfa', 'Cfa022935' => 'cfa', 'Ciclev10019081m.g' => 'ccl', 'Ciclev10025076m.g' => 'ccl', 'Ciclev10030712m.g' => 'ccl', 'Ciclev10033760m.g' => 'ccl', 'CiPaw.05G105600' => 'cil', 'CiPaw.08G136700' => 'cil', 'CiPaw.11G003900' => 'cil', 'CiPaw.11G023700' => 'cil', 'CiPaw.12G003700' => 'cil', 'ClCG06G017100' => 'cla', 'ClCG06G018110' => 'cla', 'ClCG07G008800' => 'cla', 'ClCG07G015330' => 'cla', 'COL.COLO4_13698' => 'col', 'COL.COLO4_16659' => 'col', 'COL.COLO4_21986' => 'col', 'COL.COLO4_24049' => 'col', 'COL.COLO4_29061' => 'col', 'COL.COLO4_29075' => 'col', 'COL.COLO4_30094' => 'col', 'Cpa.g.c33689' => 'cpa', 'Cpa.g.sc108.39' => 'cpa', 'Cpa.g.sc108.41' => 'cpa', 'Cpa.g.sc1163.1' => 'cpa', 'Cpa.g.sc4.155' => 'cpa', 'Cpa.g.sc6.194' => 'cpa', 'CsaV3_1G000340' => 'csa', 'CsaV3_1G001400' => 'csa', 'CsaV3_4G002220' => 'csa', 'CsaV3_4G005370' => 'csa', 'CSS0007487' => 'camsi', 'CSS0008066' => 'camsi', 'CSS0009120' => 'camsi', 'CSS0015512' => 'camsi', 'CSS0022409' => 'camsi', 'CSS0025358' => 'camsi', 'CSS0044547' => 'camsi', 'DCAR_013057' => 'dca', 'DCAR_015058' => 'dca', 'DCAR_016027' => 'dca', 'DCAR_017327' => 'dca', 'DCAR_020743' => 'dca', 'DCAR_026157' => 'dca', 'DCAR_032339' => 'dca', 'DCAR_032340' => 'dca', 'Dinv11200' => 'din', 'Dinv11201' => 'din', 'Dinv20631' => 'din', 'Dinv23182' => 'din', 'Dinv33466' => 'din', 'Dinv33583' => 'din', 'Dinv38565' => 'din', 'Duzib068G0200' => 'dzi', 'Duzib147G0132' => 'dzi', 'Duzib147G0635' => 'dzi', 'Duzib205G1670' => 'dzi', 'Duzib251G0606' => 'dzi', 'ECA232G3336' => 'eca', 'ECA232G3763' => 'eca', 'ECA232G4845' => 'eca', 'ECA234G1607' => 'eca', 'ECA246G0932' => 'eca', 'ECA247G0781' => 'eca', 'ECA247G1932' => 'eca', 'ECA247G2079' => 'eca', 'ECA247G3338' => 'eca', 'ECA247G4115' => 'eca', 'EL10Ac3g06552' => 'bvu', 'EL10Ac5g10721' => 'bvu', 'EL10Ac5g10722' => 'bvu', 'EL10Ac5g10723' => 'bvu', 'EL10Ac5g11361' => 'bvu', 'EL10Ac6g13553' => 'bvu', 'EL10As8g23872' => 'bvu', 'Eucgr.B00250' => 'egr', 'Eucgr.B00251' => 'egr', 'Eucgr.B03533' => 'egr', 'Eucgr.I02381' => 'egr', 'Eucgr.K02700' => 'egr', 'FAN02G0174' => 'fan', 'FAN02G3146' => 'fan', 'FAN04G1672' => 'fan', 'FAN04G2273' => 'fan', 'FAN05G2791' => 'fan', 'FAN05G4035' => 'fan', 'FAN07G0834' => 'fan', 'FAN08G1198' => 'fan', 'FAN09G4182' => 'fan', 'FAN12G0496' => 'fan', 'FAN13G1027' => 'fan', 'FAN13G2951' => 'fan', 'FAN14G0705' => 'fan', 'FAN14G0720' => 'fan', 'FAN17G0201' => 'fan', 'FAN17G2665' => 'fan', 'FAN18G1456' => 'fan', 'FAN18G1525' => 'fan', 'FAN18G3500' => 'fan', 'FAN28G2670' => 'fan', 'FvH4_1g12391' => 'fve', 'FvH4_4g23220' => 'fve', 'FvH4_5g08810' => 'fve', 'FvH4_5g28960' => 'fve', 'FvH4_6g42820' => 'fve', 'FvH4_6g51110' => 'fve', 'Glyma.02G051802' => 'gma', 'Glyma.04G185300' => 'gma', 'Glyma.05G202900' => 'gma', 'Glyma.08G010300' => 'gma', 'Glyma.16G131900' => 'gma', 'Glyma.17G087900' => 'gma', 'Gohir.A07G048600' => 'ghi', 'Gohir.A11G179000' => 'ghi', 'Gohir.A12G140900' => 'ghi', 'Gohir.A12G140950' => 'ghi', 'Gohir.A12G191700' => 'ghi', 'Gohir.A13G086300' => 'ghi', 'Gohir.D07G052900' => 'ghi', 'Gohir.D11G186600' => 'ghi', 'Gohir.D12G145575' => 'ghi', 'Gohir.D12G145650' => 'ghi', 'Gohir.D12G145725' => 'ghi', 'Gohir.D12G194050' => 'ghi', 'Gohir.D13G091800' => 'ghi', 'Gorai.001G055900' => 'gra', 'Gorai.007G198400' => 'gra', 'Gorai.008G157000' => 'gra', 'Gorai.008G157100' => 'gra', 'Gorai.008G208700' => 'gra', 'Gorai.010G138700' => 'gra', 'GSVIVG01000977001' => 'vvi', 'GSVIVG01007708001' => 'vvi', 'GSVIVG01008587001' => 'vvi', 'GSVIVG01018849001' => 'vvi', 'GSVIVG01032432001' => 'vvi', 'HanXRQChr02g0034131' => 'han', 'HanXRQChr02g0035981' => 'han', 'HanXRQChr02g0035991' => 'han', 'HanXRQChr05g0155611' => 'han', 'HanXRQChr05g0155621' => 'han', 'HanXRQChr08g0236501' => 'han', 'HanXRQChr09g0261321' => 'han', 'HanXRQChr09g0272081' => 'han', 'HanXRQChr10g0310741' => 'han', 'HanXRQChr11g0325591' => 'han', 'HanXRQChr12g0385691' => 'han', 'HanXRQChr13g0387801' => 'han', 'HanXRQChr15g0463011' => 'han', 'Haze_03826' => 'cav', 'Haze_03827' => 'cav', 'Haze_07183' => 'cav', 'Haze_07537' => 'cav', 'Haze_07539' => 'cav', 'Haze_12461' => 'cav', 'Haze_16115' => 'cav', 'Haze_16808' => 'cav', 'Haze_18531' => 'cav', 'Hma1.2p1_0046F.1_g026700' => 'hma', 'Hma1.2p1_0046F.1_g026710' => 'hma', 'Hma1.2p1_0168F.1_g074340' => 'hma', 'Hma1.2p1_0266F.1_g107030' => 'hma', 'Hma1.2p1_0266F.1_g107060' => 'hma', 'Hma1.2p1_0275F.1_g110510' => 'hma', 'Hma1.2p1_0592F.1_g185490' => 'hma', 'Hma1.2p1_0592F.1_g185500' => 'hma', 'Hma1.2p1_0592F.1_g185510' => 'hma', 'Hma1.2p1_0592F.1_g185520' => 'hma', 'Hma1.2p1_0592F.1_g185530' => 'hma', 'Hma1.2p1_0818F.1_g223450' => 'hma', 'HPP92_009708' => 'vpl', 'HPP92_009793' => 'vpl', 'HPP92_009796' => 'vpl', 'HPP92_009797' => 'vpl', 'HPP92_014940' => 'vpl', 'HPP92_014988' => 'vpl', 'Hund02463' => 'sun', 'Hund02760' => 'sun', 'Hund05071' => 'sun', 'Hund10108' => 'sun', 'Hund11204' => 'sun', 'Hund14016' => 'sun', 'Hund16464' => 'sun', 'Lalb_Chr09g0333391' => 'lal', 'Lalb_Chr11g0070461' => 'lal', 'Lalb_Chr12g0201671' => 'lal', 'Lalb_Chr13g0297161' => 'lal', 'Lj1g0002823' => 'lja', 'Lj3C1074T6' => 'lonja', 'Lj4A212T28' => 'lonja', 'Lj4g0005516' => 'lja', 'Lj4g0013705' => 'lja', 'Lj4g0027865' => 'lja', 'Lj5C92G16' => 'lonja', 'Lj5C92T12' => 'lonja', 'Lj7C596T3' => 'lonja', 'Lj9A446G59' => 'lonja', 'Lj9A482G21' => 'lonja', 'Lsat_1_v5_gn_1_28261' => 'lsa', 'Lsat_1_v5_gn_1_28281' => 'lsa', 'Lsat_1_v5_gn_1_32721' => 'lsa', 'Lsat_1_v5_gn_4_151760' => 'lsa', 'Lsat_1_v5_gn_4_2120' => 'lsa', 'Lsat_1_v5_gn_4_75761' => 'lsa', 'Lsat_1_v5_gn_5_10920' => 'lsa', 'Manes.02G099900' => 'mes', 'Manes.11G096200' => 'mes', 'Manes.12G007200' => 'mes', 'Manes.14G048300' => 'mes', 'Manes.17G114700' => 'mes', 'Mapoly0002s0070' => 'mpo', 'Mapoly0029s0099' => 'mpo', 'MBI07_g24742_MAGBIO' => 'mbi', 'MBI10_g27988_MAGBIO' => 'mbi', 'MBI11_g13057_MAGBIO' => 'mbi', 'MD02G1137200' => 'mdo', 'MD06G1137200' => 'mdo', 'MD07G1122300' => 'mdo', 'MD09G1078200' => 'mdo', 'MD13G1123700' => 'mdo', 'MD14G1151900' => 'mdo', 'MD17G1030900' => 'mdo', 'MD17G1068200' => 'mdo', 'MD17G1068600' => 'mdo', 'Medtr3g077540' => 'mtr', 'Medtr4g105530' => 'mtr', 'Medtr8g076580' => 'mtr', 'Medtr8g076590' => 'mtr', 'Medtr8g096410' => 'mtr', 'MELO3C016411.2' => 'cme', 'MELO3C017780.2' => 'cme', 'MELO3C022560.2' => 'cme', 'MELO3C026187.2' => 'cme', 'MELO3C026286.2' => 'cme', 'MELO3C032854.2' => 'cme', 'Migut.H02495' => 'egut', 'Migut.I00561' => 'egut', 'Migut.K01015' => 'egut', 'Migut.K01016' => 'egut', 'Migut.L00743' => 'egut', 'Migut.L00744' => 'egut', 'Migut.L00746' => 'egut', 'Migut.L00798' => 'egut', 'Migut.L00799' => 'egut', 'Migut.N02096' => 'egut', 'MSTRG.11259' => 'ama', 'MSTRG.23142' => 'ama', 'MSTRG.2499' => 'ama', 'Nitab4.5_0000003g0730' => 'nta', 'Nitab4.5_0000137g0020' => 'nta', 'Nitab4.5_0000721g0210' => 'nta', 'Nitab4.5_0000723g0050' => 'nta', 'Nitab4.5_0000913g0070' => 'nta', 'Nitab4.5_0001332g0040' => 'nta', 'Nitab4.5_0001771g0050' => 'nta', 'Nitab4.5_0001918g0050' => 'nta', 'Nitab4.5_0002686g0030' => 'nta', 'Nitab4.5_0003156g0020' => 'nta', 'Nitab4.5_0003383g0040' => 'nta', 'Nitab4.5_0003918g0010' => 'nta', 'Nitab4.5_0006760g0010' => 'nta', 'Nn1g05981' => 'nnu', 'Nn1g06288' => 'nnu', 'Nn3g16371' => 'nnu', 'Nn3g16786' => 'nnu', 'Nn4g22232' => 'nnu', 'Oeu005144.1' => 'oeu', 'Oeu005145.1' => 'oeu', 'Oeu011348.1' => 'oeu', 'Oeu016415.1' => 'oeu', 'Oeu023501.1' => 'oeu', 'Oeu044473.1' => 'oeu', 'Oeu048892.2' => 'oeu', 'Os01g0549200' => 'osa', 'Os02g0469300' => 'osa', 'Os04g0311100' => 'osa', 'Os06g0474900' => 'osa', 'Os10g0181700' => 'osa', 'Os11g0454800' => 'osa', 'Peaxi162Scf00037g00714' => 'pax', 'Peaxi162Scf00084g01217' => 'pax', 'Peaxi162Scf00257g00217' => 'pax', 'Peaxi162Scf00516g00215' => 'pax', 'Peaxi162Scf00689g00123' => 'pax', 'PGR044G2719' => 'pgr', 'PGR083G1360' => 'pgr', 'PGR102G2849' => 'pgr', 'PGR119G2534' => 'pgr', 'PGSC0003DMG400003538' => 'stu', 'PGSC0003DMG400028138' => 'stu', 'PGSC0003DMG400031732' => 'stu', 'PGSC0003DMG400038165' => 'stu', 'Phvul.002G284600' => 'pvu', 'Phvul.003G258200' => 'pvu', 'Phvul.009G176500' => 'pvu', 'Potri.003G167201' => 'ptr', 'Potri.005G118400' => 'ptr', 'Potri.012G089000' => 'ptr', 'Potri.012G102800' => 'ptr', 'Potri.015G079400' => 'ptr', 'Potri.015G100900' => 'ptr', 'Pp3c14_9810' => 'ppa', 'Pp3c15_10450' => 'ppa', 'Pp3c20_19150' => 'ppa', 'Pp3c23_12740' => 'ppa', 'Pp3c23_6310' => 'ppa', 'Pp3c24_3720' => 'ppa', 'Pp3c27_2580' => 'ppa', 'Pp3c9_8990' => 'ppa', 'PRCOL_00002854' => 'pco', 'Prupe.1G221200' => 'ppe', 'Prupe.3G289000' => 'ppe', 'Prupe.5G147000' => 'ppe', 'Prupe.6G157300' => 'ppe', 'Prupe.7G163400' => 'ppe', 'Psat0s2177g0040' => 'psa', 'Psat3g174760' => 'psa', 'Psat3g192160' => 'psa', 'Psat4g058520' => 'psa', 'Psat4g096840' => 'psa', 'Psat7g037320' => 'psa', 'PSO017G1274' => 'pso', 'PSO017G5166' => 'pso', 'PSO063G4558' => 'pso', 'PSO170G4458' => 'pso', 'PSO170G5005' => 'pso', 'PSO210G6156' => 'pso', 'PSO210G6635' => 'pso', 'PSO210G7397' => 'pso', 'PSO210G7700' => 'pso', 'PSO455G0035' => 'pso', 'PSO455G0180' => 'pso', 'PSO478G4515' => 'pso', 'PSO832G1305' => 'pso', 'PSO832G3489' => 'pso', 'QL02p075247' => 'qlo', 'QL03p051148' => 'qlo', 'QL05p010313' => 'qlo', 'QL06p034627' => 'qlo', 'QL10p001889' => 'qlo', 'QL10p010846' => 'qlo', 'RcHm_v2.0_Chr1g0350621' => 'rch', 'RcHm_v2.0_Chr1g0350641' => 'rch', 'RcHm_v2.0_Chr2g0092891' => 'rch', 'RcHm_v2.0_Chr2g0100251' => 'rch', 'RcHm_v2.0_Chr2g0158661' => 'rch', 'RcHm_v2.0_Chr2g0172741' => 'rch', 'RcHm_v2.0_Chr4g0429571' => 'rch', 'RcHm_v2.0_Chr5g0042471' => 'rch', 'RcHm_v2.0_Chr7g0189451' => 'rch', 'Rhsim08G0052000' => 'rsi', 'Rhsim08G0174400' => 'rsi', 'Rhsim08G0193200' => 'rsi', 'Rhsim10G0214800' => 'rsi', 'Rhsim10G0214900' => 'rsi', 'Rhsim10G0215000' => 'rsi', 'Rhsim12G0022900' => 'rsi', 'Rhsim12G0177500' => 'rsi', 'Rhsim12G0177700' => 'rsi', 'Sabra03G0122600' => 'sbr', 'Sabra05G0097400' => 'sbr', 'Sabra12G0064100' => 'sbr', 'Sabra15G0121300' => 'sbr', 'SalBow2G0642' => 'sbo', 'SalBow5G2667' => 'sbo', 'SalBow5G4873' => 'sbo', 'SalBow8G2395' => 'sbo', 'Sc03g0003290' => 'sci', 'Sc10g0010130' => 'sci', 'Sc22g0003650' => 'sci', 'Sed0001603' => 'sed', 'Sed0004259' => 'sed', 'Sed0006789' => 'sed', 'Sed0011838' => 'sed', 'Sed0012964' => 'sed', 'Sed0016383' => 'sed', 'Sed0019010' => 'sed', 'Sed0020188' => 'sed', 'SEGI_04702' => 'sgi', 'SEGI_17231' => 'sgi', 'SEGI_18877' => 'sgi', 'SEGI_25196' => 'sgi', 'SEGI_25515' => 'sgi', 'SEGI_28445' => 'sgi', 'SEGI_37452' => 'sgi', 'SGA_v2.0_scaffold188G40336' => 'sas', 'SGA_v2.0_scaffold228G43247' => 'sas', 'SGA_v2.0_scaffold280G46853' => 'sas', 'SGA_v2.0_scaffold34G13808' => 'sas', 'SGA_v2.0_scaffold40G15576' => 'sas', 'SGA_v2.0_scaffold611G53188' => 'sas', 'SGA_v2.0_scaffold78G25461' => 'sas', 'SGA_v2.0_scaffold90G27888' => 'sas', 'SHI08601' => 'shi', 'SHI08606' => 'shi', 'SHI17117' => 'shi', 'SHI17119' => 'shi', 'SMO118G0201' => 'smo', 'SMO169G0247' => 'smo', 'SMO176G0006' => 'smo', 'SMO176G0015' => 'smo', 'SMO202G0006' => 'smo', 'SMO240G0050' => 'smo', 'SMO286G0009' => 'smo', 'SMO338G0033' => 'smo', 'SMO356G0533' => 'smo', 'SMO364G0382' => 'smo', 'SMO367G0166' => 'smo', 'SMO367G1098' => 'smo', 'Solyc01g009920.3' => 'sly', 'Solyc01g099300.3' => 'sly', 'Solyc02g084700.3' => 'sly', 'Solyc03g097520.3' => 'sly', 'Solyc06g071580.3' => 'sly', 'Solyc10g081760.3' => 'sly', 'Sopen01g005480' => 'spe', 'Sopen01g042850' => 'spe', 'Sopen02g029370' => 'spe', 'Sopen03g028280' => 'spe', 'Sopen06g027870' => 'spe', 'Sopen10g032270' => 'spe', 'Sp5g18180' => 'spa', 'Sp6g12880' => 'spa', 'Sp6g30850' => 'spa', 'Sp7g22960' => 'spa', 'Sp7g34010' => 'spa', 'SpUn1326_0010' => 'spa', 'TAR371G0242' => 'tar', 'TAR622G0638' => 'tar', 'TAR628G1548' => 'tar', 'TAR629G1079' => 'tar', 'TAR629G3413' => 'tar', 'THA.LOC104804249' => 'tha', 'THA.LOC104808315' => 'tha', 'THA.LOC104809238' => 'tha', 'THA.LOC104825484' => 'tha', 'Thecc.01G025500' => 'tca', 'Thecc.03G015800' => 'tca', 'Thecc.03G018000' => 'tca', 'Thecc.03G134800' => 'tca', 'Thecc.04G014700' => 'tca', 'Thhalv10006991m.g' => 'esa', 'Thhalv10012707m.g' => 'esa', 'Thhalv10015739m.g' => 'esa', 'Thhalv10024553m.g' => 'esa', 'Thhalv10024673m.g' => 'esa', 'Thhalv10029187m.g' => 'esa', 'TPR.G12971' => 'tpr', 'TPR.G29396' => 'tpr', 'TPR.G33376' => 'tpr', 'TPR.G35508' => 'tpr', 'TPR.G35516' => 'tpr', 'TPR.G37317' => 'tpr', 'TPR.G37389' => 'tpr', 'TPR.G37523' => 'tpr', 'TPR.G559' => 'tpr', 'TWI14G0070' => 'twi', 'TWI14G0729' => 'twi', 'TWI18G0596' => 'twi', 'TWI39G0780' => 'twi', 'TWI39G0850' => 'twi', 'TWI73G1052' => 'twi', 'unitig_52.g17485' => 'ugi', 'unitig_61.g26355' => 'ugi', 'vmacro01040' => 'vma', 'vmacro16731' => 'vma', 'vmacro18270' => 'vma', 'vmacro19142' => 'vma', 'vmacro19407' => 'vma', 'vmacro19408' => 'vma', 'vmacro21899' => 'vma', 'vmacro21900' => 'vma', 'vmacro21901' => 'vma', 'VMungo0251G0490' => 'vmu', 'VMungo0251G1748' => 'vmu', 'VMungo1309G0421' => 'vmu', 'Zm00001eb086500' => 'zma', 'Zm00001eb150680' => 'zma', 'Zm00001eb162330' => 'zma', 'Zm00001eb203130' => 'zma', 'Zm00001eb369480' => 'zma', 'Zm00001eb382340' => 'zma', 'Zm00001eb416360' => 'zma' ), 'gf_id' => 'HOM05D000902', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000902' ), 'data_identifier' => 'HOM05D000902', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000902', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '663', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02470' => 'bna', 'A01p16260' => 'bna', 'A02p01680' => 'bna', 'A03p16600' => 'bna', 'A03p55660' => 'bna', 'A03p64160' => 'bna', 'A03p64170' => 'bna', 'A08p31900' => 'bna', 'A09p59530' => 'bna', 'A10p08230' => 'bna', 'A10p25090' => 'bna', 'Aa31LG3G7100' => 'aar', 'Aa31LG3G7110' => 'aar', 'Aa31LG6G13160' => 'aar', 'Aa31LG7G10770' => 'aar', 'Aa31LG7G3830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2723' => 'aag', 'Actinidia08045' => 'ach', 'Actinidia08888' => 'ach', 'Actinidia18333' => 'ach', 'Actinidia19334' => 'ach', 'Actinidia25552' => 'ach', 'Actinidia26089' => 'ach', 'Actinidia30615' => 'ach', 'Actinidia30616' => 'ach', 'Actinidia33083' => 'ach', 'Actinidia35762' => 'ach', 'Ah.02g110620' => 'amhyb', 'Ah.11g046390' => 'amhyb', 'AL1G31670' => 'aly', 'AL6G23730' => 'aly', 'AL7G14740' => 'aly', 'AL7G14750' => 'aly', 'AL7G14760' => 'aly', 'AL7G28220' => 'aly', 'AL8G24940' => 'aly', 'Aqoxy3G01665' => 'aox', 'Aqoxy3G02853' => 'aox', 'Aqoxy5G01513' => 'aox', 'Aqoxy5G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8SKA4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ75LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKDA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0LJZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7REX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZP4YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWX7I5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2QKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS0L9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPCD8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q161UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC7XCF' => 'arhy', 'AT1G19100' => 'ath', 'AT4G24970' => 'ath', 'AT4G36270' => 'ath', 'AT4G36280' => 'ath', 'AT4G36290' => 'ath', 'AT5G13130' => 'ath', 'AT5G50780' => 'ath', 'ATR0582G266' => 'atr', 'ATR0661G195' => 'atr', 'ATR1152G031' => 'atr', 'Atru.chr11.2382' => 'acertr', 'Atru.chr12.2337' => 'acertr', 'Atru.chr3.744' => 'acertr', 'Atru.chr6.1870' => 'acertr', 'Atru.chr9.2515' => 'acertr', 'AUR62004120' => 'cqu', 'AUR62005667' => 'cqu', 'AUR62007634' => 'cqu', 'AUR62008186' => 'cqu', 'AUR62008187' => 'cqu', 'AUR62008188' => 'cqu', 'AUR62027954' => 'cqu', 'AUR62028766' => 'cqu', 'AUR62028767' => 'cqu', 'AUR62028768' => 'cqu', 'AUR62028886' => 'cqu', 'AUR62029563' => 'cqu', 'AUR62038832' => 'cqu', 'BcaB01g04149' => 'bca', 'BcaB03g12940' => 'bca', 'BcaB03g13090' => 'bca', 'BcaB03g14466' => 'bca', 'BcaB05g24035' => 'bca', 'BcaC01g06050' => 'bca', 'BcaC04g19148' => 'bca', 'BcaC04g20761' => 'bca', 'BcaC06g32845' => 'bca', 'BcaC07g41274' => 'bca', 'BcaC09g50827' => 'bca', 'BcaNung00741' => 'bca', 'BcaNung00742' => 'bca', 'BcaNung01859' => 'bca', 'BcaNung03985' => 'bca', 'BcaNung03989' => 'bca', 'BcaNung05661' => 'bca', 'BolC1t00257H' => 'bol', 'BolC1t01956H' => 'bol', 'BolC2t06534H' => 'bol', 'BolC3t14334H' => 'bol', 'BolC5t30451H' => 'bol', 'BolC7t45880H' => 'bol', 'BolC7t46586H' => 'bol', 'BolC8t49301H' => 'bol', 'BolC8t51837H' => 'bol', 'BolC9t56822H' => 'bol', 'BolC9t59235H' => 'bol', 'BraA01t00234Z' => 'bra', 'BraA01t01563Z' => 'bra', 'BraA02t05147Z' => 'bra', 'BraA03t10947Z' => 'bra', 'BraA03t14633Z' => 'bra', 'BraA08t35112Z' => 'bra', 'BraA09t41330Z' => 'bra', 'BraA10t44570Z' => 'bra', 'C01p02670' => 'bna', 'C01p20260' => 'bna', 'C02p05890' => 'bna', 'C03p19530' => 'bna', 'C05p17470' => 'bna', 'C07p53900' => 'bna', 'C07p61630' => 'bna', 'C08p16800' => 'bna', 'C08p42810' => 'bna', 'C09p39480' => 'bna', 'C09p63980' => 'bna', 'CAN.G1001.7' => 'can', 'CAN.G1034.55' => 'can', 'CAN.G143.7' => 'can', 'CAN.G3340.1' => 'can', 'CAN.G358.19' => 'can', 'CAN.G373.2' => 'can', 'CAN.G674.16' => 'can', 'CAN.G674.17' => 'can', 'CAN.G674.18' => 'can', 'CAN.G732.2' => 'can', 'CAN.G732.3' => 'can', 'CAN.G993.39' => 'can', 'CANSAT01G2052' => 'cansat', 'CANSAT80G0070' => 'cansat', 'CANSAT80G0483' => 'cansat', 'CANSAT80G0625' => 'cansat', 'CARHR019690' => 'chi', 'CARHR080280' => 'chi', 'CARHR152750' => 'chi', 'CARHR152760' => 'chi', 'CARHR152770' => 'chi', 'CARHR200340' => 'chi', 'CARHR232370' => 'chi', 'CARHR244670' => 'chi', 'CARHR244680' => 'chi', 'CARHR257520' => 'chi', 'Carub.0001s1872' => 'cru', 'Carub.0006s1130' => 'cru', 'Carub.0007s0396' => 'cru', 'Carub.0007s0397' => 'cru', 'Carub.0007s1608' => 'cru', 'Carub.0008s1068' => 'cru', 'Carub.0008s1077' => 'cru', 'Ca_16158_v3' => 'car', 'Ca_17571_v3' => 'car', 'Ca_21936_v3' => 'car', 'Ca_22350_v3' => 'car', 'CBR_g22445' => 'cbr', 'CBR_g26290' => 'cbr', 'Cc04_g09610' => 'ccan', 'Cc04_g12280' => 'ccan', 'Cc07_g10230' => 'ccan', 'CDE02G0093' => 'cde', 'CDE02G0701' => 'cde', 'CDE04G1050' => 'cde', 'CDE05G1833' => 'cde', 'CDE05G3058' => 'cde', 'CDE05G3380' => 'cde', 'CDE06G0536' => 'cde', 'Cfa006923' => 'cfa', 'Cfa009402' => 'cfa', 'Cfa018751' => 'cfa', 'Cfa019164' => 'cfa', 'Cfa022935' => 'cfa', 'Ciclev10019081m.g' => 'ccl', 'Ciclev10025076m.g' => 'ccl', 'Ciclev10030712m.g' => 'ccl', 'Ciclev10033760m.g' => 'ccl', 'CiPaw.05G105600' => 'cil', 'CiPaw.08G136700' => 'cil', 'CiPaw.11G003900' => 'cil', 'CiPaw.11G023700' => 'cil', 'CiPaw.12G003700' => 'cil', 'ClCG06G017100' => 'cla', 'ClCG06G018110' => 'cla', 'ClCG07G008800' => 'cla', 'ClCG07G015330' => 'cla', 'COL.COLO4_13698' => 'col', 'COL.COLO4_16659' => 'col', 'COL.COLO4_21986' => 'col', 'COL.COLO4_24049' => 'col', 'COL.COLO4_29061' => 'col', 'COL.COLO4_29075' => 'col', 'COL.COLO4_30094' => 'col', 'Cpa.g.c33689' => 'cpa', 'Cpa.g.sc108.39' => 'cpa', 'Cpa.g.sc108.41' => 'cpa', 'Cpa.g.sc1163.1' => 'cpa', 'Cpa.g.sc4.155' => 'cpa', 'Cpa.g.sc6.194' => 'cpa', 'CsaV3_1G000340' => 'csa', 'CsaV3_1G001400' => 'csa', 'CsaV3_4G002220' => 'csa', 'CsaV3_4G005370' => 'csa', 'CSS0007487' => 'camsi', 'CSS0008066' => 'camsi', 'CSS0009120' => 'camsi', 'CSS0015512' => 'camsi', 'CSS0022409' => 'camsi', 'CSS0025358' => 'camsi', 'CSS0044547' => 'camsi', 'DCAR_013057' => 'dca', 'DCAR_015058' => 'dca', 'DCAR_016027' => 'dca', 'DCAR_017327' => 'dca', 'DCAR_020743' => 'dca', 'DCAR_026157' => 'dca', 'DCAR_032339' => 'dca', 'DCAR_032340' => 'dca', 'Dinv11200' => 'din', 'Dinv11201' => 'din', 'Dinv20631' => 'din', 'Dinv23182' => 'din', 'Dinv33466' => 'din', 'Dinv33583' => 'din', 'Dinv38565' => 'din', 'Duzib068G0200' => 'dzi', 'Duzib147G0132' => 'dzi', 'Duzib147G0635' => 'dzi', 'Duzib205G1670' => 'dzi', 'Duzib251G0606' => 'dzi', 'ECA232G3336' => 'eca', 'ECA232G3763' => 'eca', 'ECA232G4845' => 'eca', 'ECA234G1607' => 'eca', 'ECA246G0932' => 'eca', 'ECA247G0781' => 'eca', 'ECA247G1932' => 'eca', 'ECA247G2079' => 'eca', 'ECA247G3338' => 'eca', 'ECA247G4115' => 'eca', 'EL10Ac3g06552' => 'bvu', 'EL10Ac5g10721' => 'bvu', 'EL10Ac5g10722' => 'bvu', 'EL10Ac5g10723' => 'bvu', 'EL10Ac5g11361' => 'bvu', 'EL10Ac6g13553' => 'bvu', 'EL10As8g23872' => 'bvu', 'Eucgr.B00250' => 'egr', 'Eucgr.B00251' => 'egr', 'Eucgr.B03533' => 'egr', 'Eucgr.I02381' => 'egr', 'Eucgr.K02700' => 'egr', 'FAN02G0174' => 'fan', 'FAN02G3146' => 'fan', 'FAN04G1672' => 'fan', 'FAN04G2273' => 'fan', 'FAN05G2791' => 'fan', 'FAN05G4035' => 'fan', 'FAN07G0834' => 'fan', 'FAN08G1198' => 'fan', 'FAN09G4182' => 'fan', 'FAN12G0496' => 'fan', 'FAN13G1027' => 'fan', 'FAN13G2951' => 'fan', 'FAN14G0705' => 'fan', 'FAN14G0720' => 'fan', 'FAN17G0201' => 'fan', 'FAN17G2665' => 'fan', 'FAN18G1456' => 'fan', 'FAN18G1525' => 'fan', 'FAN18G3500' => 'fan', 'FAN28G2670' => 'fan', 'FvH4_1g12391' => 'fve', 'FvH4_4g23220' => 'fve', 'FvH4_5g08810' => 'fve', 'FvH4_5g28960' => 'fve', 'FvH4_6g42820' => 'fve', 'FvH4_6g51110' => 'fve', 'Glyma.02G051802' => 'gma', 'Glyma.04G185300' => 'gma', 'Glyma.05G202900' => 'gma', 'Glyma.08G010300' => 'gma', 'Glyma.16G131900' => 'gma', 'Glyma.17G087900' => 'gma', 'Gohir.A07G048600' => 'ghi', 'Gohir.A11G179000' => 'ghi', 'Gohir.A12G140900' => 'ghi', 'Gohir.A12G140950' => 'ghi', 'Gohir.A12G191700' => 'ghi', 'Gohir.A13G086300' => 'ghi', 'Gohir.D07G052900' => 'ghi', 'Gohir.D11G186600' => 'ghi', 'Gohir.D12G145575' => 'ghi', 'Gohir.D12G145650' => 'ghi', 'Gohir.D12G145725' => 'ghi', 'Gohir.D12G194050' => 'ghi', 'Gohir.D13G091800' => 'ghi', 'Gorai.001G055900' => 'gra', 'Gorai.007G198400' => 'gra', 'Gorai.008G157000' => 'gra', 'Gorai.008G157100' => 'gra', 'Gorai.008G208700' => 'gra', 'Gorai.010G138700' => 'gra', 'GSVIVG01000977001' => 'vvi', 'GSVIVG01007708001' => 'vvi', 'GSVIVG01008587001' => 'vvi', 'GSVIVG01018849001' => 'vvi', 'GSVIVG01032432001' => 'vvi', 'HanXRQChr02g0034131' => 'han', 'HanXRQChr02g0035981' => 'han', 'HanXRQChr02g0035991' => 'han', 'HanXRQChr05g0155611' => 'han', 'HanXRQChr05g0155621' => 'han', 'HanXRQChr08g0236501' => 'han', 'HanXRQChr09g0261321' => 'han', 'HanXRQChr09g0272081' => 'han', 'HanXRQChr10g0310741' => 'han', 'HanXRQChr11g0325591' => 'han', 'HanXRQChr12g0385691' => 'han', 'HanXRQChr13g0387801' => 'han', 'HanXRQChr15g0463011' => 'han', 'Haze_03826' => 'cav', 'Haze_03827' => 'cav', 'Haze_07183' => 'cav', 'Haze_07537' => 'cav', 'Haze_07539' => 'cav', 'Haze_12461' => 'cav', 'Haze_16115' => 'cav', 'Haze_16808' => 'cav', 'Haze_18531' => 'cav', 'Hma1.2p1_0046F.1_g026700' => 'hma', 'Hma1.2p1_0046F.1_g026710' => 'hma', 'Hma1.2p1_0168F.1_g074340' => 'hma', 'Hma1.2p1_0266F.1_g107030' => 'hma', 'Hma1.2p1_0266F.1_g107060' => 'hma', 'Hma1.2p1_0275F.1_g110510' => 'hma', 'Hma1.2p1_0592F.1_g185490' => 'hma', 'Hma1.2p1_0592F.1_g185500' => 'hma', 'Hma1.2p1_0592F.1_g185510' => 'hma', 'Hma1.2p1_0592F.1_g185520' => 'hma', 'Hma1.2p1_0592F.1_g185530' => 'hma', 'Hma1.2p1_0818F.1_g223450' => 'hma', 'HPP92_009708' => 'vpl', 'HPP92_009793' => 'vpl', 'HPP92_009796' => 'vpl', 'HPP92_009797' => 'vpl', 'HPP92_014940' => 'vpl', 'HPP92_014988' => 'vpl', 'Hund02463' => 'sun', 'Hund02760' => 'sun', 'Hund05071' => 'sun', 'Hund10108' => 'sun', 'Hund11204' => 'sun', 'Hund14016' => 'sun', 'Hund16464' => 'sun', 'Lalb_Chr09g0333391' => 'lal', 'Lalb_Chr11g0070461' => 'lal', 'Lalb_Chr12g0201671' => 'lal', 'Lalb_Chr13g0297161' => 'lal', 'Lj1g0002823' => 'lja', 'Lj3C1074T6' => 'lonja', 'Lj4A212T28' => 'lonja', 'Lj4g0005516' => 'lja', 'Lj4g0013705' => 'lja', 'Lj4g0027865' => 'lja', 'Lj5C92G16' => 'lonja', 'Lj5C92T12' => 'lonja', 'Lj7C596T3' => 'lonja', 'Lj9A446G59' => 'lonja', 'Lj9A482G21' => 'lonja', 'Lsat_1_v5_gn_1_28261' => 'lsa', 'Lsat_1_v5_gn_1_28281' => 'lsa', 'Lsat_1_v5_gn_1_32721' => 'lsa', 'Lsat_1_v5_gn_4_151760' => 'lsa', 'Lsat_1_v5_gn_4_2120' => 'lsa', 'Lsat_1_v5_gn_4_75761' => 'lsa', 'Lsat_1_v5_gn_5_10920' => 'lsa', 'Manes.02G099900' => 'mes', 'Manes.11G096200' => 'mes', 'Manes.12G007200' => 'mes', 'Manes.14G048300' => 'mes', 'Manes.17G114700' => 'mes', 'Mapoly0002s0070' => 'mpo', 'Mapoly0029s0099' => 'mpo', 'MBI07_g24742_MAGBIO' => 'mbi', 'MBI10_g27988_MAGBIO' => 'mbi', 'MBI11_g13057_MAGBIO' => 'mbi', 'MD02G1137200' => 'mdo', 'MD06G1137200' => 'mdo', 'MD07G1122300' => 'mdo', 'MD09G1078200' => 'mdo', 'MD13G1123700' => 'mdo', 'MD14G1151900' => 'mdo', 'MD17G1030900' => 'mdo', 'MD17G1068200' => 'mdo', 'MD17G1068600' => 'mdo', 'Medtr3g077540' => 'mtr', 'Medtr4g105530' => 'mtr', 'Medtr8g076580' => 'mtr', 'Medtr8g076590' => 'mtr', 'Medtr8g096410' => 'mtr', 'MELO3C016411.2' => 'cme', 'MELO3C017780.2' => 'cme', 'MELO3C022560.2' => 'cme', 'MELO3C026187.2' => 'cme', 'MELO3C026286.2' => 'cme', 'MELO3C032854.2' => 'cme', 'Migut.H02495' => 'egut', 'Migut.I00561' => 'egut', 'Migut.K01015' => 'egut', 'Migut.K01016' => 'egut', 'Migut.L00743' => 'egut', 'Migut.L00744' => 'egut', 'Migut.L00746' => 'egut', 'Migut.L00798' => 'egut', 'Migut.L00799' => 'egut', 'Migut.N02096' => 'egut', 'MSTRG.11259' => 'ama', 'MSTRG.23142' => 'ama', 'MSTRG.2499' => 'ama', 'Nitab4.5_0000003g0730' => 'nta', 'Nitab4.5_0000137g0020' => 'nta', 'Nitab4.5_0000721g0210' => 'nta', 'Nitab4.5_0000723g0050' => 'nta', 'Nitab4.5_0000913g0070' => 'nta', 'Nitab4.5_0001332g0040' => 'nta', 'Nitab4.5_0001771g0050' => 'nta', 'Nitab4.5_0001918g0050' => 'nta', 'Nitab4.5_0002686g0030' => 'nta', 'Nitab4.5_0003156g0020' => 'nta', 'Nitab4.5_0003383g0040' => 'nta', 'Nitab4.5_0003918g0010' => 'nta', 'Nitab4.5_0006760g0010' => 'nta', 'Nn1g05981' => 'nnu', 'Nn1g06288' => 'nnu', 'Nn3g16371' => 'nnu', 'Nn3g16786' => 'nnu', 'Nn4g22232' => 'nnu', 'Oeu005144.1' => 'oeu', 'Oeu005145.1' => 'oeu', 'Oeu011348.1' => 'oeu', 'Oeu016415.1' => 'oeu', 'Oeu023501.1' => 'oeu', 'Oeu044473.1' => 'oeu', 'Oeu048892.2' => 'oeu', 'Os01g0549200' => 'osa', 'Os02g0469300' => 'osa', 'Os04g0311100' => 'osa', 'Os06g0474900' => 'osa', 'Os10g0181700' => 'osa', 'Os11g0454800' => 'osa', 'Peaxi162Scf00037g00714' => 'pax', 'Peaxi162Scf00084g01217' => 'pax', 'Peaxi162Scf00257g00217' => 'pax', 'Peaxi162Scf00516g00215' => 'pax', 'Peaxi162Scf00689g00123' => 'pax', 'PGR044G2719' => 'pgr', 'PGR083G1360' => 'pgr', 'PGR102G2849' => 'pgr', 'PGR119G2534' => 'pgr', 'PGSC0003DMG400003538' => 'stu', 'PGSC0003DMG400028138' => 'stu', 'PGSC0003DMG400031732' => 'stu', 'PGSC0003DMG400038165' => 'stu', 'Phvul.002G284600' => 'pvu', 'Phvul.003G258200' => 'pvu', 'Phvul.009G176500' => 'pvu', 'Potri.003G167201' => 'ptr', 'Potri.005G118400' => 'ptr', 'Potri.012G089000' => 'ptr', 'Potri.012G102800' => 'ptr', 'Potri.015G079400' => 'ptr', 'Potri.015G100900' => 'ptr', 'Pp3c14_9810' => 'ppa', 'Pp3c15_10450' => 'ppa', 'Pp3c20_19150' => 'ppa', 'Pp3c23_12740' => 'ppa', 'Pp3c23_6310' => 'ppa', 'Pp3c24_3720' => 'ppa', 'Pp3c27_2580' => 'ppa', 'Pp3c9_8990' => 'ppa', 'PRCOL_00002854' => 'pco', 'Prupe.1G221200' => 'ppe', 'Prupe.3G289000' => 'ppe', 'Prupe.5G147000' => 'ppe', 'Prupe.6G157300' => 'ppe', 'Prupe.7G163400' => 'ppe', 'Psat0s2177g0040' => 'psa', 'Psat3g174760' => 'psa', 'Psat3g192160' => 'psa', 'Psat4g058520' => 'psa', 'Psat4g096840' => 'psa', 'Psat7g037320' => 'psa', 'PSO017G1274' => 'pso', 'PSO017G5166' => 'pso', 'PSO063G4558' => 'pso', 'PSO170G4458' => 'pso', 'PSO170G5005' => 'pso', 'PSO210G6156' => 'pso', 'PSO210G6635' => 'pso', 'PSO210G7397' => 'pso', 'PSO210G7700' => 'pso', 'PSO455G0035' => 'pso', 'PSO455G0180' => 'pso', 'PSO478G4515' => 'pso', 'PSO832G1305' => 'pso', 'PSO832G3489' => 'pso', 'QL02p075247' => 'qlo', 'QL03p051148' => 'qlo', 'QL05p010313' => 'qlo', 'QL06p034627' => 'qlo', 'QL10p001889' => 'qlo', 'QL10p010846' => 'qlo', 'RcHm_v2.0_Chr1g0350621' => 'rch', 'RcHm_v2.0_Chr1g0350641' => 'rch', 'RcHm_v2.0_Chr2g0092891' => 'rch', 'RcHm_v2.0_Chr2g0100251' => 'rch', 'RcHm_v2.0_Chr2g0158661' => 'rch', 'RcHm_v2.0_Chr2g0172741' => 'rch', 'RcHm_v2.0_Chr4g0429571' => 'rch', 'RcHm_v2.0_Chr5g0042471' => 'rch', 'RcHm_v2.0_Chr7g0189451' => 'rch', 'Rhsim08G0052000' => 'rsi', 'Rhsim08G0174400' => 'rsi', 'Rhsim08G0193200' => 'rsi', 'Rhsim10G0214800' => 'rsi', 'Rhsim10G0214900' => 'rsi', 'Rhsim10G0215000' => 'rsi', 'Rhsim12G0022900' => 'rsi', 'Rhsim12G0177500' => 'rsi', 'Rhsim12G0177700' => 'rsi', 'Sabra03G0122600' => 'sbr', 'Sabra05G0097400' => 'sbr', 'Sabra12G0064100' => 'sbr', 'Sabra15G0121300' => 'sbr', 'SalBow2G0642' => 'sbo', 'SalBow5G2667' => 'sbo', 'SalBow5G4873' => 'sbo', 'SalBow8G2395' => 'sbo', 'Sc03g0003290' => 'sci', 'Sc10g0010130' => 'sci', 'Sc22g0003650' => 'sci', 'Sed0001603' => 'sed', 'Sed0004259' => 'sed', 'Sed0006789' => 'sed', 'Sed0011838' => 'sed', 'Sed0012964' => 'sed', 'Sed0016383' => 'sed', 'Sed0019010' => 'sed', 'Sed0020188' => 'sed', 'SEGI_04702' => 'sgi', 'SEGI_17231' => 'sgi', 'SEGI_18877' => 'sgi', 'SEGI_25196' => 'sgi', 'SEGI_25515' => 'sgi', 'SEGI_28445' => 'sgi', 'SEGI_37452' => 'sgi', 'SGA_v2.0_scaffold188G40336' => 'sas', 'SGA_v2.0_scaffold228G43247' => 'sas', 'SGA_v2.0_scaffold280G46853' => 'sas', 'SGA_v2.0_scaffold34G13808' => 'sas', 'SGA_v2.0_scaffold40G15576' => 'sas', 'SGA_v2.0_scaffold611G53188' => 'sas', 'SGA_v2.0_scaffold78G25461' => 'sas', 'SGA_v2.0_scaffold90G27888' => 'sas', 'SHI08601' => 'shi', 'SHI08606' => 'shi', 'SHI17117' => 'shi', 'SHI17119' => 'shi', 'SMO118G0201' => 'smo', 'SMO169G0247' => 'smo', 'SMO176G0006' => 'smo', 'SMO176G0015' => 'smo', 'SMO202G0006' => 'smo', 'SMO240G0050' => 'smo', 'SMO286G0009' => 'smo', 'SMO338G0033' => 'smo', 'SMO356G0533' => 'smo', 'SMO364G0382' => 'smo', 'SMO367G0166' => 'smo', 'SMO367G1098' => 'smo', 'Solyc01g009920.3' => 'sly', 'Solyc01g099300.3' => 'sly', 'Solyc02g084700.3' => 'sly', 'Solyc03g097520.3' => 'sly', 'Solyc06g071580.3' => 'sly', 'Solyc10g081760.3' => 'sly', 'Sopen01g005480' => 'spe', 'Sopen01g042850' => 'spe', 'Sopen02g029370' => 'spe', 'Sopen03g028280' => 'spe', 'Sopen06g027870' => 'spe', 'Sopen10g032270' => 'spe', 'Sp5g18180' => 'spa', 'Sp6g12880' => 'spa', 'Sp6g30850' => 'spa', 'Sp7g22960' => 'spa', 'Sp7g34010' => 'spa', 'SpUn1326_0010' => 'spa', 'TAR371G0242' => 'tar', 'TAR622G0638' => 'tar', 'TAR628G1548' => 'tar', 'TAR629G1079' => 'tar', 'TAR629G3413' => 'tar', 'THA.LOC104804249' => 'tha', 'THA.LOC104808315' => 'tha', 'THA.LOC104809238' => 'tha', 'THA.LOC104825484' => 'tha', 'Thecc.01G025500' => 'tca', 'Thecc.03G015800' => 'tca', 'Thecc.03G018000' => 'tca', 'Thecc.03G134800' => 'tca', 'Thecc.04G014700' => 'tca', 'Thhalv10006991m.g' => 'esa', 'Thhalv10012707m.g' => 'esa', 'Thhalv10015739m.g' => 'esa', 'Thhalv10024553m.g' => 'esa', 'Thhalv10024673m.g' => 'esa', 'Thhalv10029187m.g' => 'esa', 'TPR.G12971' => 'tpr', 'TPR.G29396' => 'tpr', 'TPR.G33376' => 'tpr', 'TPR.G35508' => 'tpr', 'TPR.G35516' => 'tpr', 'TPR.G37317' => 'tpr', 'TPR.G37389' => 'tpr', 'TPR.G37523' => 'tpr', 'TPR.G559' => 'tpr', 'TWI14G0070' => 'twi', 'TWI14G0729' => 'twi', 'TWI18G0596' => 'twi', 'TWI39G0780' => 'twi', 'TWI39G0850' => 'twi', 'TWI73G1052' => 'twi', 'unitig_52.g17485' => 'ugi', 'unitig_61.g26355' => 'ugi', 'vmacro01040' => 'vma', 'vmacro16731' => 'vma', 'vmacro18270' => 'vma', 'vmacro19142' => 'vma', 'vmacro19407' => 'vma', 'vmacro19408' => 'vma', 'vmacro21899' => 'vma', 'vmacro21900' => 'vma', 'vmacro21901' => 'vma', 'VMungo0251G0490' => 'vmu', 'VMungo0251G1748' => 'vmu', 'VMungo1309G0421' => 'vmu', 'Zm00001eb086500' => 'zma', 'Zm00001eb150680' => 'zma', 'Zm00001eb162330' => 'zma', 'Zm00001eb203130' => 'zma', 'Zm00001eb369480' => 'zma', 'Zm00001eb382340' => 'zma', 'Zm00001eb416360' => 'zma' ) $gf_id = 'HOM05D000902' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000902' ) $data_identifier = 'HOM05D000902' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 13, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 10, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 6, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 9, 'hma' => (int) 12, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 4, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 6, 'ppa' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 6, 'rch' => (int) 9, 'rsi' => (int) 9, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 12, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 3, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416360' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000902', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '663', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02470' => 'bna', 'A01p16260' => 'bna', 'A02p01680' => 'bna', 'A03p16600' => 'bna', 'A03p55660' => 'bna', 'A03p64160' => 'bna', 'A03p64170' => 'bna', 'A08p31900' => 'bna', 'A09p59530' => 'bna', 'A10p08230' => 'bna', 'A10p25090' => 'bna', 'Aa31LG3G7100' => 'aar', 'Aa31LG3G7110' => 'aar', 'Aa31LG6G13160' => 'aar', 'Aa31LG7G10770' => 'aar', 'Aa31LG7G3830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2723' => 'aag', 'Actinidia08045' => 'ach', 'Actinidia08888' => 'ach', 'Actinidia18333' => 'ach', 'Actinidia19334' => 'ach', 'Actinidia25552' => 'ach', 'Actinidia26089' => 'ach', 'Actinidia30615' => 'ach', 'Actinidia30616' => 'ach', 'Actinidia33083' => 'ach', 'Actinidia35762' => 'ach', 'Ah.02g110620' => 'amhyb', 'Ah.11g046390' => 'amhyb', 'AL1G31670' => 'aly', 'AL6G23730' => 'aly', 'AL7G14740' => 'aly', 'AL7G14750' => 'aly', 'AL7G14760' => 'aly', 'AL7G28220' => 'aly', 'AL8G24940' => 'aly', 'Aqoxy3G01665' => 'aox', 'Aqoxy3G02853' => 'aox', 'Aqoxy5G01513' => 'aox', 'Aqoxy5G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8SKA4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ75LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKDA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0LJZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7REX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZP4YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWX7I5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2QKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS0L9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPCD8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q161UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC7XCF' => 'arhy', 'AT1G19100' => 'ath', 'AT4G24970' => 'ath', 'AT4G36270' => 'ath', 'AT4G36280' => 'ath', 'AT4G36290' => 'ath', 'AT5G13130' => 'ath', 'AT5G50780' => 'ath', 'ATR0582G266' => 'atr', 'ATR0661G195' => 'atr', 'ATR1152G031' => 'atr', 'Atru.chr11.2382' => 'acertr', 'Atru.chr12.2337' => 'acertr', 'Atru.chr3.744' => 'acertr', 'Atru.chr6.1870' => 'acertr', 'Atru.chr9.2515' => 'acertr', 'AUR62004120' => 'cqu', 'AUR62005667' => 'cqu', 'AUR62007634' => 'cqu', 'AUR62008186' => 'cqu', 'AUR62008187' => 'cqu', 'AUR62008188' => 'cqu', 'AUR62027954' => 'cqu', 'AUR62028766' => 'cqu', 'AUR62028767' => 'cqu', 'AUR62028768' => 'cqu', 'AUR62028886' => 'cqu', 'AUR62029563' => 'cqu', 'AUR62038832' => 'cqu', 'BcaB01g04149' => 'bca', 'BcaB03g12940' => 'bca', 'BcaB03g13090' => 'bca', 'BcaB03g14466' => 'bca', 'BcaB05g24035' => 'bca', 'BcaC01g06050' => 'bca', 'BcaC04g19148' => 'bca', 'BcaC04g20761' => 'bca', 'BcaC06g32845' => 'bca', 'BcaC07g41274' => 'bca', 'BcaC09g50827' => 'bca', 'BcaNung00741' => 'bca', 'BcaNung00742' => 'bca', 'BcaNung01859' => 'bca', 'BcaNung03985' => 'bca', 'BcaNung03989' => 'bca', 'BcaNung05661' => 'bca', 'BolC1t00257H' => 'bol', 'BolC1t01956H' => 'bol', 'BolC2t06534H' => 'bol', 'BolC3t14334H' => 'bol', 'BolC5t30451H' => 'bol', 'BolC7t45880H' => 'bol', 'BolC7t46586H' => 'bol', 'BolC8t49301H' => 'bol', 'BolC8t51837H' => 'bol', 'BolC9t56822H' => 'bol', 'BolC9t59235H' => 'bol', 'BraA01t00234Z' => 'bra', 'BraA01t01563Z' => 'bra', 'BraA02t05147Z' => 'bra', 'BraA03t10947Z' => 'bra', 'BraA03t14633Z' => 'bra', 'BraA08t35112Z' => 'bra', 'BraA09t41330Z' => 'bra', 'BraA10t44570Z' => 'bra', 'C01p02670' => 'bna', 'C01p20260' => 'bna', 'C02p05890' => 'bna', 'C03p19530' => 'bna', 'C05p17470' => 'bna', 'C07p53900' => 'bna', 'C07p61630' => 'bna', 'C08p16800' => 'bna', 'C08p42810' => 'bna', 'C09p39480' => 'bna', 'C09p63980' => 'bna', 'CAN.G1001.7' => 'can', 'CAN.G1034.55' => 'can', 'CAN.G143.7' => 'can', 'CAN.G3340.1' => 'can', 'CAN.G358.19' => 'can', 'CAN.G373.2' => 'can', 'CAN.G674.16' => 'can', 'CAN.G674.17' => 'can', 'CAN.G674.18' => 'can', 'CAN.G732.2' => 'can', 'CAN.G732.3' => 'can', 'CAN.G993.39' => 'can', 'CANSAT01G2052' => 'cansat', 'CANSAT80G0070' => 'cansat', 'CANSAT80G0483' => 'cansat', 'CANSAT80G0625' => 'cansat', 'CARHR019690' => 'chi', 'CARHR080280' => 'chi', 'CARHR152750' => 'chi', 'CARHR152760' => 'chi', 'CARHR152770' => 'chi', 'CARHR200340' => 'chi', 'CARHR232370' => 'chi', 'CARHR244670' => 'chi', 'CARHR244680' => 'chi', 'CARHR257520' => 'chi', 'Carub.0001s1872' => 'cru', 'Carub.0006s1130' => 'cru', 'Carub.0007s0396' => 'cru', 'Carub.0007s0397' => 'cru', 'Carub.0007s1608' => 'cru', 'Carub.0008s1068' => 'cru', 'Carub.0008s1077' => 'cru', 'Ca_16158_v3' => 'car', 'Ca_17571_v3' => 'car', 'Ca_21936_v3' => 'car', 'Ca_22350_v3' => 'car', 'CBR_g22445' => 'cbr', 'CBR_g26290' => 'cbr', 'Cc04_g09610' => 'ccan', 'Cc04_g12280' => 'ccan', 'Cc07_g10230' => 'ccan', 'CDE02G0093' => 'cde', 'CDE02G0701' => 'cde', 'CDE04G1050' => 'cde', 'CDE05G1833' => 'cde', 'CDE05G3058' => 'cde', 'CDE05G3380' => 'cde', 'CDE06G0536' => 'cde', 'Cfa006923' => 'cfa', 'Cfa009402' => 'cfa', 'Cfa018751' => 'cfa', 'Cfa019164' => 'cfa', 'Cfa022935' => 'cfa', 'Ciclev10019081m.g' => 'ccl', 'Ciclev10025076m.g' => 'ccl', 'Ciclev10030712m.g' => 'ccl', 'Ciclev10033760m.g' => 'ccl', 'CiPaw.05G105600' => 'cil', 'CiPaw.08G136700' => 'cil', 'CiPaw.11G003900' => 'cil', 'CiPaw.11G023700' => 'cil', 'CiPaw.12G003700' => 'cil', 'ClCG06G017100' => 'cla', 'ClCG06G018110' => 'cla', 'ClCG07G008800' => 'cla', 'ClCG07G015330' => 'cla', 'COL.COLO4_13698' => 'col', 'COL.COLO4_16659' => 'col', 'COL.COLO4_21986' => 'col', 'COL.COLO4_24049' => 'col', 'COL.COLO4_29061' => 'col', 'COL.COLO4_29075' => 'col', 'COL.COLO4_30094' => 'col', 'Cpa.g.c33689' => 'cpa', 'Cpa.g.sc108.39' => 'cpa', 'Cpa.g.sc108.41' => 'cpa', 'Cpa.g.sc1163.1' => 'cpa', 'Cpa.g.sc4.155' => 'cpa', 'Cpa.g.sc6.194' => 'cpa', 'CsaV3_1G000340' => 'csa', 'CsaV3_1G001400' => 'csa', 'CsaV3_4G002220' => 'csa', 'CsaV3_4G005370' => 'csa', 'CSS0007487' => 'camsi', 'CSS0008066' => 'camsi', 'CSS0009120' => 'camsi', 'CSS0015512' => 'camsi', 'CSS0022409' => 'camsi', 'CSS0025358' => 'camsi', 'CSS0044547' => 'camsi', 'DCAR_013057' => 'dca', 'DCAR_015058' => 'dca', 'DCAR_016027' => 'dca', 'DCAR_017327' => 'dca', 'DCAR_020743' => 'dca', 'DCAR_026157' => 'dca', 'DCAR_032339' => 'dca', 'DCAR_032340' => 'dca', 'Dinv11200' => 'din', 'Dinv11201' => 'din', 'Dinv20631' => 'din', 'Dinv23182' => 'din', 'Dinv33466' => 'din', 'Dinv33583' => 'din', 'Dinv38565' => 'din', 'Duzib068G0200' => 'dzi', 'Duzib147G0132' => 'dzi', 'Duzib147G0635' => 'dzi', 'Duzib205G1670' => 'dzi', 'Duzib251G0606' => 'dzi', 'ECA232G3336' => 'eca', 'ECA232G3763' => 'eca', 'ECA232G4845' => 'eca', 'ECA234G1607' => 'eca', 'ECA246G0932' => 'eca', 'ECA247G0781' => 'eca', 'ECA247G1932' => 'eca', 'ECA247G2079' => 'eca', 'ECA247G3338' => 'eca', 'ECA247G4115' => 'eca', 'EL10Ac3g06552' => 'bvu', 'EL10Ac5g10721' => 'bvu', 'EL10Ac5g10722' => 'bvu', 'EL10Ac5g10723' => 'bvu', 'EL10Ac5g11361' => 'bvu', 'EL10Ac6g13553' => 'bvu', 'EL10As8g23872' => 'bvu', 'Eucgr.B00250' => 'egr', 'Eucgr.B00251' => 'egr', 'Eucgr.B03533' => 'egr', 'Eucgr.I02381' => 'egr', 'Eucgr.K02700' => 'egr', 'FAN02G0174' => 'fan', 'FAN02G3146' => 'fan', 'FAN04G1672' => 'fan', 'FAN04G2273' => 'fan', 'FAN05G2791' => 'fan', 'FAN05G4035' => 'fan', 'FAN07G0834' => 'fan', 'FAN08G1198' => 'fan', 'FAN09G4182' => 'fan', 'FAN12G0496' => 'fan', 'FAN13G1027' => 'fan', 'FAN13G2951' => 'fan', 'FAN14G0705' => 'fan', 'FAN14G0720' => 'fan', 'FAN17G0201' => 'fan', 'FAN17G2665' => 'fan', 'FAN18G1456' => 'fan', 'FAN18G1525' => 'fan', 'FAN18G3500' => 'fan', 'FAN28G2670' => 'fan', 'FvH4_1g12391' => 'fve', 'FvH4_4g23220' => 'fve', 'FvH4_5g08810' => 'fve', 'FvH4_5g28960' => 'fve', 'FvH4_6g42820' => 'fve', 'FvH4_6g51110' => 'fve', 'Glyma.02G051802' => 'gma', 'Glyma.04G185300' => 'gma', 'Glyma.05G202900' => 'gma', 'Glyma.08G010300' => 'gma', 'Glyma.16G131900' => 'gma', 'Glyma.17G087900' => 'gma', 'Gohir.A07G048600' => 'ghi', 'Gohir.A11G179000' => 'ghi', 'Gohir.A12G140900' => 'ghi', 'Gohir.A12G140950' => 'ghi', 'Gohir.A12G191700' => 'ghi', 'Gohir.A13G086300' => 'ghi', 'Gohir.D07G052900' => 'ghi', 'Gohir.D11G186600' => 'ghi', 'Gohir.D12G145575' => 'ghi', 'Gohir.D12G145650' => 'ghi', 'Gohir.D12G145725' => 'ghi', 'Gohir.D12G194050' => 'ghi', 'Gohir.D13G091800' => 'ghi', 'Gorai.001G055900' => 'gra', 'Gorai.007G198400' => 'gra', 'Gorai.008G157000' => 'gra', 'Gorai.008G157100' => 'gra', 'Gorai.008G208700' => 'gra', 'Gorai.010G138700' => 'gra', 'GSVIVG01000977001' => 'vvi', 'GSVIVG01007708001' => 'vvi', 'GSVIVG01008587001' => 'vvi', 'GSVIVG01018849001' => 'vvi', 'GSVIVG01032432001' => 'vvi', 'HanXRQChr02g0034131' => 'han', 'HanXRQChr02g0035981' => 'han', 'HanXRQChr02g0035991' => 'han', 'HanXRQChr05g0155611' => 'han', 'HanXRQChr05g0155621' => 'han', 'HanXRQChr08g0236501' => 'han', 'HanXRQChr09g0261321' => 'han', 'HanXRQChr09g0272081' => 'han', 'HanXRQChr10g0310741' => 'han', 'HanXRQChr11g0325591' => 'han', 'HanXRQChr12g0385691' => 'han', 'HanXRQChr13g0387801' => 'han', 'HanXRQChr15g0463011' => 'han', 'Haze_03826' => 'cav', 'Haze_03827' => 'cav', 'Haze_07183' => 'cav', 'Haze_07537' => 'cav', 'Haze_07539' => 'cav', 'Haze_12461' => 'cav', 'Haze_16115' => 'cav', 'Haze_16808' => 'cav', 'Haze_18531' => 'cav', 'Hma1.2p1_0046F.1_g026700' => 'hma', 'Hma1.2p1_0046F.1_g026710' => 'hma', 'Hma1.2p1_0168F.1_g074340' => 'hma', 'Hma1.2p1_0266F.1_g107030' => 'hma', 'Hma1.2p1_0266F.1_g107060' => 'hma', 'Hma1.2p1_0275F.1_g110510' => 'hma', 'Hma1.2p1_0592F.1_g185490' => 'hma', 'Hma1.2p1_0592F.1_g185500' => 'hma', 'Hma1.2p1_0592F.1_g185510' => 'hma', 'Hma1.2p1_0592F.1_g185520' => 'hma', 'Hma1.2p1_0592F.1_g185530' => 'hma', 'Hma1.2p1_0818F.1_g223450' => 'hma', 'HPP92_009708' => 'vpl', 'HPP92_009793' => 'vpl', 'HPP92_009796' => 'vpl', 'HPP92_009797' => 'vpl', 'HPP92_014940' => 'vpl', 'HPP92_014988' => 'vpl', 'Hund02463' => 'sun', 'Hund02760' => 'sun', 'Hund05071' => 'sun', 'Hund10108' => 'sun', 'Hund11204' => 'sun', 'Hund14016' => 'sun', 'Hund16464' => 'sun', 'Lalb_Chr09g0333391' => 'lal', 'Lalb_Chr11g0070461' => 'lal', 'Lalb_Chr12g0201671' => 'lal', 'Lalb_Chr13g0297161' => 'lal', 'Lj1g0002823' => 'lja', 'Lj3C1074T6' => 'lonja', 'Lj4A212T28' => 'lonja', 'Lj4g0005516' => 'lja', 'Lj4g0013705' => 'lja', 'Lj4g0027865' => 'lja', 'Lj5C92G16' => 'lonja', 'Lj5C92T12' => 'lonja', 'Lj7C596T3' => 'lonja', 'Lj9A446G59' => 'lonja', 'Lj9A482G21' => 'lonja', 'Lsat_1_v5_gn_1_28261' => 'lsa', 'Lsat_1_v5_gn_1_28281' => 'lsa', 'Lsat_1_v5_gn_1_32721' => 'lsa', 'Lsat_1_v5_gn_4_151760' => 'lsa', 'Lsat_1_v5_gn_4_2120' => 'lsa', 'Lsat_1_v5_gn_4_75761' => 'lsa', 'Lsat_1_v5_gn_5_10920' => 'lsa', 'Manes.02G099900' => 'mes', 'Manes.11G096200' => 'mes', 'Manes.12G007200' => 'mes', 'Manes.14G048300' => 'mes', 'Manes.17G114700' => 'mes', 'Mapoly0002s0070' => 'mpo', 'Mapoly0029s0099' => 'mpo', 'MBI07_g24742_MAGBIO' => 'mbi', 'MBI10_g27988_MAGBIO' => 'mbi', 'MBI11_g13057_MAGBIO' => 'mbi', 'MD02G1137200' => 'mdo', 'MD06G1137200' => 'mdo', 'MD07G1122300' => 'mdo', 'MD09G1078200' => 'mdo', 'MD13G1123700' => 'mdo', 'MD14G1151900' => 'mdo', 'MD17G1030900' => 'mdo', 'MD17G1068200' => 'mdo', 'MD17G1068600' => 'mdo', 'Medtr3g077540' => 'mtr', 'Medtr4g105530' => 'mtr', 'Medtr8g076580' => 'mtr', 'Medtr8g076590' => 'mtr', 'Medtr8g096410' => 'mtr', 'MELO3C016411.2' => 'cme', 'MELO3C017780.2' => 'cme', 'MELO3C022560.2' => 'cme', 'MELO3C026187.2' => 'cme', 'MELO3C026286.2' => 'cme', 'MELO3C032854.2' => 'cme', 'Migut.H02495' => 'egut', 'Migut.I00561' => 'egut', 'Migut.K01015' => 'egut', 'Migut.K01016' => 'egut', 'Migut.L00743' => 'egut', 'Migut.L00744' => 'egut', 'Migut.L00746' => 'egut', 'Migut.L00798' => 'egut', 'Migut.L00799' => 'egut', 'Migut.N02096' => 'egut', 'MSTRG.11259' => 'ama', 'MSTRG.23142' => 'ama', 'MSTRG.2499' => 'ama', 'Nitab4.5_0000003g0730' => 'nta', 'Nitab4.5_0000137g0020' => 'nta', 'Nitab4.5_0000721g0210' => 'nta', 'Nitab4.5_0000723g0050' => 'nta', 'Nitab4.5_0000913g0070' => 'nta', 'Nitab4.5_0001332g0040' => 'nta', 'Nitab4.5_0001771g0050' => 'nta', 'Nitab4.5_0001918g0050' => 'nta', 'Nitab4.5_0002686g0030' => 'nta', 'Nitab4.5_0003156g0020' => 'nta', 'Nitab4.5_0003383g0040' => 'nta', 'Nitab4.5_0003918g0010' => 'nta', 'Nitab4.5_0006760g0010' => 'nta', 'Nn1g05981' => 'nnu', 'Nn1g06288' => 'nnu', 'Nn3g16371' => 'nnu', 'Nn3g16786' => 'nnu', 'Nn4g22232' => 'nnu', 'Oeu005144.1' => 'oeu', 'Oeu005145.1' => 'oeu', 'Oeu011348.1' => 'oeu', 'Oeu016415.1' => 'oeu', 'Oeu023501.1' => 'oeu', 'Oeu044473.1' => 'oeu', 'Oeu048892.2' => 'oeu', 'Os01g0549200' => 'osa', 'Os02g0469300' => 'osa', 'Os04g0311100' => 'osa', 'Os06g0474900' => 'osa', 'Os10g0181700' => 'osa', 'Os11g0454800' => 'osa', 'Peaxi162Scf00037g00714' => 'pax', 'Peaxi162Scf00084g01217' => 'pax', 'Peaxi162Scf00257g00217' => 'pax', 'Peaxi162Scf00516g00215' => 'pax', 'Peaxi162Scf00689g00123' => 'pax', 'PGR044G2719' => 'pgr', 'PGR083G1360' => 'pgr', 'PGR102G2849' => 'pgr', 'PGR119G2534' => 'pgr', 'PGSC0003DMG400003538' => 'stu', 'PGSC0003DMG400028138' => 'stu', 'PGSC0003DMG400031732' => 'stu', 'PGSC0003DMG400038165' => 'stu', 'Phvul.002G284600' => 'pvu', 'Phvul.003G258200' => 'pvu', 'Phvul.009G176500' => 'pvu', 'Potri.003G167201' => 'ptr', 'Potri.005G118400' => 'ptr', 'Potri.012G089000' => 'ptr', 'Potri.012G102800' => 'ptr', 'Potri.015G079400' => 'ptr', 'Potri.015G100900' => 'ptr', 'Pp3c14_9810' => 'ppa', 'Pp3c15_10450' => 'ppa', 'Pp3c20_19150' => 'ppa', 'Pp3c23_12740' => 'ppa', 'Pp3c23_6310' => 'ppa', 'Pp3c24_3720' => 'ppa', 'Pp3c27_2580' => 'ppa', 'Pp3c9_8990' => 'ppa', 'PRCOL_00002854' => 'pco', 'Prupe.1G221200' => 'ppe', 'Prupe.3G289000' => 'ppe', 'Prupe.5G147000' => 'ppe', 'Prupe.6G157300' => 'ppe', 'Prupe.7G163400' => 'ppe', 'Psat0s2177g0040' => 'psa', 'Psat3g174760' => 'psa', 'Psat3g192160' => 'psa', 'Psat4g058520' => 'psa', 'Psat4g096840' => 'psa', 'Psat7g037320' => 'psa', 'PSO017G1274' => 'pso', 'PSO017G5166' => 'pso', 'PSO063G4558' => 'pso', 'PSO170G4458' => 'pso', 'PSO170G5005' => 'pso', 'PSO210G6156' => 'pso', 'PSO210G6635' => 'pso', 'PSO210G7397' => 'pso', 'PSO210G7700' => 'pso', 'PSO455G0035' => 'pso', 'PSO455G0180' => 'pso', 'PSO478G4515' => 'pso', 'PSO832G1305' => 'pso', 'PSO832G3489' => 'pso', 'QL02p075247' => 'qlo', 'QL03p051148' => 'qlo', 'QL05p010313' => 'qlo', 'QL06p034627' => 'qlo', 'QL10p001889' => 'qlo', 'QL10p010846' => 'qlo', 'RcHm_v2.0_Chr1g0350621' => 'rch', 'RcHm_v2.0_Chr1g0350641' => 'rch', 'RcHm_v2.0_Chr2g0092891' => 'rch', 'RcHm_v2.0_Chr2g0100251' => 'rch', 'RcHm_v2.0_Chr2g0158661' => 'rch', 'RcHm_v2.0_Chr2g0172741' => 'rch', 'RcHm_v2.0_Chr4g0429571' => 'rch', 'RcHm_v2.0_Chr5g0042471' => 'rch', 'RcHm_v2.0_Chr7g0189451' => 'rch', 'Rhsim08G0052000' => 'rsi', 'Rhsim08G0174400' => 'rsi', 'Rhsim08G0193200' => 'rsi', 'Rhsim10G0214800' => 'rsi', 'Rhsim10G0214900' => 'rsi', 'Rhsim10G0215000' => 'rsi', 'Rhsim12G0022900' => 'rsi', 'Rhsim12G0177500' => 'rsi', 'Rhsim12G0177700' => 'rsi', 'Sabra03G0122600' => 'sbr', 'Sabra05G0097400' => 'sbr', 'Sabra12G0064100' => 'sbr', 'Sabra15G0121300' => 'sbr', 'SalBow2G0642' => 'sbo', 'SalBow5G2667' => 'sbo', 'SalBow5G4873' => 'sbo', 'SalBow8G2395' => 'sbo', 'Sc03g0003290' => 'sci', 'Sc10g0010130' => 'sci', 'Sc22g0003650' => 'sci', 'Sed0001603' => 'sed', 'Sed0004259' => 'sed', 'Sed0006789' => 'sed', 'Sed0011838' => 'sed', 'Sed0012964' => 'sed', 'Sed0016383' => 'sed', 'Sed0019010' => 'sed', 'Sed0020188' => 'sed', 'SEGI_04702' => 'sgi', 'SEGI_17231' => 'sgi', 'SEGI_18877' => 'sgi', 'SEGI_25196' => 'sgi', 'SEGI_25515' => 'sgi', 'SEGI_28445' => 'sgi', 'SEGI_37452' => 'sgi', 'SGA_v2.0_scaffold188G40336' => 'sas', 'SGA_v2.0_scaffold228G43247' => 'sas', 'SGA_v2.0_scaffold280G46853' => 'sas', 'SGA_v2.0_scaffold34G13808' => 'sas', 'SGA_v2.0_scaffold40G15576' => 'sas', 'SGA_v2.0_scaffold611G53188' => 'sas', 'SGA_v2.0_scaffold78G25461' => 'sas', 'SGA_v2.0_scaffold90G27888' => 'sas', 'SHI08601' => 'shi', 'SHI08606' => 'shi', 'SHI17117' => 'shi', 'SHI17119' => 'shi', 'SMO118G0201' => 'smo', 'SMO169G0247' => 'smo', 'SMO176G0006' => 'smo', 'SMO176G0015' => 'smo', 'SMO202G0006' => 'smo', 'SMO240G0050' => 'smo', 'SMO286G0009' => 'smo', 'SMO338G0033' => 'smo', 'SMO356G0533' => 'smo', 'SMO364G0382' => 'smo', 'SMO367G0166' => 'smo', 'SMO367G1098' => 'smo', 'Solyc01g009920.3' => 'sly', 'Solyc01g099300.3' => 'sly', 'Solyc02g084700.3' => 'sly', 'Solyc03g097520.3' => 'sly', 'Solyc06g071580.3' => 'sly', 'Solyc10g081760.3' => 'sly', 'Sopen01g005480' => 'spe', 'Sopen01g042850' => 'spe', 'Sopen02g029370' => 'spe', 'Sopen03g028280' => 'spe', 'Sopen06g027870' => 'spe', 'Sopen10g032270' => 'spe', 'Sp5g18180' => 'spa', 'Sp6g12880' => 'spa', 'Sp6g30850' => 'spa', 'Sp7g22960' => 'spa', 'Sp7g34010' => 'spa', 'SpUn1326_0010' => 'spa', 'TAR371G0242' => 'tar', 'TAR622G0638' => 'tar', 'TAR628G1548' => 'tar', 'TAR629G1079' => 'tar', 'TAR629G3413' => 'tar', 'THA.LOC104804249' => 'tha', 'THA.LOC104808315' => 'tha', 'THA.LOC104809238' => 'tha', 'THA.LOC104825484' => 'tha', 'Thecc.01G025500' => 'tca', 'Thecc.03G015800' => 'tca', 'Thecc.03G018000' => 'tca', 'Thecc.03G134800' => 'tca', 'Thecc.04G014700' => 'tca', 'Thhalv10006991m.g' => 'esa', 'Thhalv10012707m.g' => 'esa', 'Thhalv10015739m.g' => 'esa', 'Thhalv10024553m.g' => 'esa', 'Thhalv10024673m.g' => 'esa', 'Thhalv10029187m.g' => 'esa', 'TPR.G12971' => 'tpr', 'TPR.G29396' => 'tpr', 'TPR.G33376' => 'tpr', 'TPR.G35508' => 'tpr', 'TPR.G35516' => 'tpr', 'TPR.G37317' => 'tpr', 'TPR.G37389' => 'tpr', 'TPR.G37523' => 'tpr', 'TPR.G559' => 'tpr', 'TWI14G0070' => 'twi', 'TWI14G0729' => 'twi', 'TWI18G0596' => 'twi', 'TWI39G0780' => 'twi', 'TWI39G0850' => 'twi', 'TWI73G1052' => 'twi', 'unitig_52.g17485' => 'ugi', 'unitig_61.g26355' => 'ugi', 'vmacro01040' => 'vma', 'vmacro16731' => 'vma', 'vmacro18270' => 'vma', 'vmacro19142' => 'vma', 'vmacro19407' => 'vma', 'vmacro19408' => 'vma', 'vmacro21899' => 'vma', 'vmacro21900' => 'vma', 'vmacro21901' => 'vma', 'VMungo0251G0490' => 'vmu', 'VMungo0251G1748' => 'vmu', 'VMungo1309G0421' => 'vmu', 'Zm00001eb086500' => 'zma', 'Zm00001eb150680' => 'zma', 'Zm00001eb162330' => 'zma', 'Zm00001eb203130' => 'zma', 'Zm00001eb369480' => 'zma', 'Zm00001eb382340' => 'zma', 'Zm00001eb416360' => 'zma' ), 'gf_id' => 'HOM05D000902', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000902' ), 'data_identifier' => 'HOM05D000902', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000902', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '663', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02470' => 'bna', 'A01p16260' => 'bna', 'A02p01680' => 'bna', 'A03p16600' => 'bna', 'A03p55660' => 'bna', 'A03p64160' => 'bna', 'A03p64170' => 'bna', 'A08p31900' => 'bna', 'A09p59530' => 'bna', 'A10p08230' => 'bna', 'A10p25090' => 'bna', 'Aa31LG3G7100' => 'aar', 'Aa31LG3G7110' => 'aar', 'Aa31LG6G13160' => 'aar', 'Aa31LG7G10770' => 'aar', 'Aa31LG7G3830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2723' => 'aag', 'Actinidia08045' => 'ach', 'Actinidia08888' => 'ach', 'Actinidia18333' => 'ach', 'Actinidia19334' => 'ach', 'Actinidia25552' => 'ach', 'Actinidia26089' => 'ach', 'Actinidia30615' => 'ach', 'Actinidia30616' => 'ach', 'Actinidia33083' => 'ach', 'Actinidia35762' => 'ach', 'Ah.02g110620' => 'amhyb', 'Ah.11g046390' => 'amhyb', 'AL1G31670' => 'aly', 'AL6G23730' => 'aly', 'AL7G14740' => 'aly', 'AL7G14750' => 'aly', 'AL7G14760' => 'aly', 'AL7G28220' => 'aly', 'AL8G24940' => 'aly', 'Aqoxy3G01665' => 'aox', 'Aqoxy3G02853' => 'aox', 'Aqoxy5G01513' => 'aox', 'Aqoxy5G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8SKA4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ75LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKDA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0LJZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7REX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZP4YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWX7I5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2QKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS0L9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPCD8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q161UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC7XCF' => 'arhy', 'AT1G19100' => 'ath', 'AT4G24970' => 'ath', 'AT4G36270' => 'ath', 'AT4G36280' => 'ath', 'AT4G36290' => 'ath', 'AT5G13130' => 'ath', 'AT5G50780' => 'ath', 'ATR0582G266' => 'atr', 'ATR0661G195' => 'atr', 'ATR1152G031' => 'atr', 'Atru.chr11.2382' => 'acertr', 'Atru.chr12.2337' => 'acertr', 'Atru.chr3.744' => 'acertr', 'Atru.chr6.1870' => 'acertr', 'Atru.chr9.2515' => 'acertr', 'AUR62004120' => 'cqu', 'AUR62005667' => 'cqu', 'AUR62007634' => 'cqu', 'AUR62008186' => 'cqu', 'AUR62008187' => 'cqu', 'AUR62008188' => 'cqu', 'AUR62027954' => 'cqu', 'AUR62028766' => 'cqu', 'AUR62028767' => 'cqu', 'AUR62028768' => 'cqu', 'AUR62028886' => 'cqu', 'AUR62029563' => 'cqu', 'AUR62038832' => 'cqu', 'BcaB01g04149' => 'bca', 'BcaB03g12940' => 'bca', 'BcaB03g13090' => 'bca', 'BcaB03g14466' => 'bca', 'BcaB05g24035' => 'bca', 'BcaC01g06050' => 'bca', 'BcaC04g19148' => 'bca', 'BcaC04g20761' => 'bca', 'BcaC06g32845' => 'bca', 'BcaC07g41274' => 'bca', 'BcaC09g50827' => 'bca', 'BcaNung00741' => 'bca', 'BcaNung00742' => 'bca', 'BcaNung01859' => 'bca', 'BcaNung03985' => 'bca', 'BcaNung03989' => 'bca', 'BcaNung05661' => 'bca', 'BolC1t00257H' => 'bol', 'BolC1t01956H' => 'bol', 'BolC2t06534H' => 'bol', 'BolC3t14334H' => 'bol', 'BolC5t30451H' => 'bol', 'BolC7t45880H' => 'bol', 'BolC7t46586H' => 'bol', 'BolC8t49301H' => 'bol', 'BolC8t51837H' => 'bol', 'BolC9t56822H' => 'bol', 'BolC9t59235H' => 'bol', 'BraA01t00234Z' => 'bra', 'BraA01t01563Z' => 'bra', 'BraA02t05147Z' => 'bra', 'BraA03t10947Z' => 'bra', 'BraA03t14633Z' => 'bra', 'BraA08t35112Z' => 'bra', 'BraA09t41330Z' => 'bra', 'BraA10t44570Z' => 'bra', 'C01p02670' => 'bna', 'C01p20260' => 'bna', 'C02p05890' => 'bna', 'C03p19530' => 'bna', 'C05p17470' => 'bna', 'C07p53900' => 'bna', 'C07p61630' => 'bna', 'C08p16800' => 'bna', 'C08p42810' => 'bna', 'C09p39480' => 'bna', 'C09p63980' => 'bna', 'CAN.G1001.7' => 'can', 'CAN.G1034.55' => 'can', 'CAN.G143.7' => 'can', 'CAN.G3340.1' => 'can', 'CAN.G358.19' => 'can', 'CAN.G373.2' => 'can', 'CAN.G674.16' => 'can', 'CAN.G674.17' => 'can', 'CAN.G674.18' => 'can', 'CAN.G732.2' => 'can', 'CAN.G732.3' => 'can', 'CAN.G993.39' => 'can', 'CANSAT01G2052' => 'cansat', 'CANSAT80G0070' => 'cansat', 'CANSAT80G0483' => 'cansat', 'CANSAT80G0625' => 'cansat', 'CARHR019690' => 'chi', 'CARHR080280' => 'chi', 'CARHR152750' => 'chi', 'CARHR152760' => 'chi', 'CARHR152770' => 'chi', 'CARHR200340' => 'chi', 'CARHR232370' => 'chi', 'CARHR244670' => 'chi', 'CARHR244680' => 'chi', 'CARHR257520' => 'chi', 'Carub.0001s1872' => 'cru', 'Carub.0006s1130' => 'cru', 'Carub.0007s0396' => 'cru', 'Carub.0007s0397' => 'cru', 'Carub.0007s1608' => 'cru', 'Carub.0008s1068' => 'cru', 'Carub.0008s1077' => 'cru', 'Ca_16158_v3' => 'car', 'Ca_17571_v3' => 'car', 'Ca_21936_v3' => 'car', 'Ca_22350_v3' => 'car', 'CBR_g22445' => 'cbr', 'CBR_g26290' => 'cbr', 'Cc04_g09610' => 'ccan', 'Cc04_g12280' => 'ccan', 'Cc07_g10230' => 'ccan', 'CDE02G0093' => 'cde', 'CDE02G0701' => 'cde', 'CDE04G1050' => 'cde', 'CDE05G1833' => 'cde', 'CDE05G3058' => 'cde', 'CDE05G3380' => 'cde', 'CDE06G0536' => 'cde', 'Cfa006923' => 'cfa', 'Cfa009402' => 'cfa', 'Cfa018751' => 'cfa', 'Cfa019164' => 'cfa', 'Cfa022935' => 'cfa', 'Ciclev10019081m.g' => 'ccl', 'Ciclev10025076m.g' => 'ccl', 'Ciclev10030712m.g' => 'ccl', 'Ciclev10033760m.g' => 'ccl', 'CiPaw.05G105600' => 'cil', 'CiPaw.08G136700' => 'cil', 'CiPaw.11G003900' => 'cil', 'CiPaw.11G023700' => 'cil', 'CiPaw.12G003700' => 'cil', 'ClCG06G017100' => 'cla', 'ClCG06G018110' => 'cla', 'ClCG07G008800' => 'cla', 'ClCG07G015330' => 'cla', 'COL.COLO4_13698' => 'col', 'COL.COLO4_16659' => 'col', 'COL.COLO4_21986' => 'col', 'COL.COLO4_24049' => 'col', 'COL.COLO4_29061' => 'col', 'COL.COLO4_29075' => 'col', 'COL.COLO4_30094' => 'col', 'Cpa.g.c33689' => 'cpa', 'Cpa.g.sc108.39' => 'cpa', 'Cpa.g.sc108.41' => 'cpa', 'Cpa.g.sc1163.1' => 'cpa', 'Cpa.g.sc4.155' => 'cpa', 'Cpa.g.sc6.194' => 'cpa', 'CsaV3_1G000340' => 'csa', 'CsaV3_1G001400' => 'csa', 'CsaV3_4G002220' => 'csa', 'CsaV3_4G005370' => 'csa', 'CSS0007487' => 'camsi', 'CSS0008066' => 'camsi', 'CSS0009120' => 'camsi', 'CSS0015512' => 'camsi', 'CSS0022409' => 'camsi', 'CSS0025358' => 'camsi', 'CSS0044547' => 'camsi', 'DCAR_013057' => 'dca', 'DCAR_015058' => 'dca', 'DCAR_016027' => 'dca', 'DCAR_017327' => 'dca', 'DCAR_020743' => 'dca', 'DCAR_026157' => 'dca', 'DCAR_032339' => 'dca', 'DCAR_032340' => 'dca', 'Dinv11200' => 'din', 'Dinv11201' => 'din', 'Dinv20631' => 'din', 'Dinv23182' => 'din', 'Dinv33466' => 'din', 'Dinv33583' => 'din', 'Dinv38565' => 'din', 'Duzib068G0200' => 'dzi', 'Duzib147G0132' => 'dzi', 'Duzib147G0635' => 'dzi', 'Duzib205G1670' => 'dzi', 'Duzib251G0606' => 'dzi', 'ECA232G3336' => 'eca', 'ECA232G3763' => 'eca', 'ECA232G4845' => 'eca', 'ECA234G1607' => 'eca', 'ECA246G0932' => 'eca', 'ECA247G0781' => 'eca', 'ECA247G1932' => 'eca', 'ECA247G2079' => 'eca', 'ECA247G3338' => 'eca', 'ECA247G4115' => 'eca', 'EL10Ac3g06552' => 'bvu', 'EL10Ac5g10721' => 'bvu', 'EL10Ac5g10722' => 'bvu', 'EL10Ac5g10723' => 'bvu', 'EL10Ac5g11361' => 'bvu', 'EL10Ac6g13553' => 'bvu', 'EL10As8g23872' => 'bvu', 'Eucgr.B00250' => 'egr', 'Eucgr.B00251' => 'egr', 'Eucgr.B03533' => 'egr', 'Eucgr.I02381' => 'egr', 'Eucgr.K02700' => 'egr', 'FAN02G0174' => 'fan', 'FAN02G3146' => 'fan', 'FAN04G1672' => 'fan', 'FAN04G2273' => 'fan', 'FAN05G2791' => 'fan', 'FAN05G4035' => 'fan', 'FAN07G0834' => 'fan', 'FAN08G1198' => 'fan', 'FAN09G4182' => 'fan', 'FAN12G0496' => 'fan', 'FAN13G1027' => 'fan', 'FAN13G2951' => 'fan', 'FAN14G0705' => 'fan', 'FAN14G0720' => 'fan', 'FAN17G0201' => 'fan', 'FAN17G2665' => 'fan', 'FAN18G1456' => 'fan', 'FAN18G1525' => 'fan', 'FAN18G3500' => 'fan', 'FAN28G2670' => 'fan', 'FvH4_1g12391' => 'fve', 'FvH4_4g23220' => 'fve', 'FvH4_5g08810' => 'fve', 'FvH4_5g28960' => 'fve', 'FvH4_6g42820' => 'fve', 'FvH4_6g51110' => 'fve', 'Glyma.02G051802' => 'gma', 'Glyma.04G185300' => 'gma', 'Glyma.05G202900' => 'gma', 'Glyma.08G010300' => 'gma', 'Glyma.16G131900' => 'gma', 'Glyma.17G087900' => 'gma', 'Gohir.A07G048600' => 'ghi', 'Gohir.A11G179000' => 'ghi', 'Gohir.A12G140900' => 'ghi', 'Gohir.A12G140950' => 'ghi', 'Gohir.A12G191700' => 'ghi', 'Gohir.A13G086300' => 'ghi', 'Gohir.D07G052900' => 'ghi', 'Gohir.D11G186600' => 'ghi', 'Gohir.D12G145575' => 'ghi', 'Gohir.D12G145650' => 'ghi', 'Gohir.D12G145725' => 'ghi', 'Gohir.D12G194050' => 'ghi', 'Gohir.D13G091800' => 'ghi', 'Gorai.001G055900' => 'gra', 'Gorai.007G198400' => 'gra', 'Gorai.008G157000' => 'gra', 'Gorai.008G157100' => 'gra', 'Gorai.008G208700' => 'gra', 'Gorai.010G138700' => 'gra', 'GSVIVG01000977001' => 'vvi', 'GSVIVG01007708001' => 'vvi', 'GSVIVG01008587001' => 'vvi', 'GSVIVG01018849001' => 'vvi', 'GSVIVG01032432001' => 'vvi', 'HanXRQChr02g0034131' => 'han', 'HanXRQChr02g0035981' => 'han', 'HanXRQChr02g0035991' => 'han', 'HanXRQChr05g0155611' => 'han', 'HanXRQChr05g0155621' => 'han', 'HanXRQChr08g0236501' => 'han', 'HanXRQChr09g0261321' => 'han', 'HanXRQChr09g0272081' => 'han', 'HanXRQChr10g0310741' => 'han', 'HanXRQChr11g0325591' => 'han', 'HanXRQChr12g0385691' => 'han', 'HanXRQChr13g0387801' => 'han', 'HanXRQChr15g0463011' => 'han', 'Haze_03826' => 'cav', 'Haze_03827' => 'cav', 'Haze_07183' => 'cav', 'Haze_07537' => 'cav', 'Haze_07539' => 'cav', 'Haze_12461' => 'cav', 'Haze_16115' => 'cav', 'Haze_16808' => 'cav', 'Haze_18531' => 'cav', 'Hma1.2p1_0046F.1_g026700' => 'hma', 'Hma1.2p1_0046F.1_g026710' => 'hma', 'Hma1.2p1_0168F.1_g074340' => 'hma', 'Hma1.2p1_0266F.1_g107030' => 'hma', 'Hma1.2p1_0266F.1_g107060' => 'hma', 'Hma1.2p1_0275F.1_g110510' => 'hma', 'Hma1.2p1_0592F.1_g185490' => 'hma', 'Hma1.2p1_0592F.1_g185500' => 'hma', 'Hma1.2p1_0592F.1_g185510' => 'hma', 'Hma1.2p1_0592F.1_g185520' => 'hma', 'Hma1.2p1_0592F.1_g185530' => 'hma', 'Hma1.2p1_0818F.1_g223450' => 'hma', 'HPP92_009708' => 'vpl', 'HPP92_009793' => 'vpl', 'HPP92_009796' => 'vpl', 'HPP92_009797' => 'vpl', 'HPP92_014940' => 'vpl', 'HPP92_014988' => 'vpl', 'Hund02463' => 'sun', 'Hund02760' => 'sun', 'Hund05071' => 'sun', 'Hund10108' => 'sun', 'Hund11204' => 'sun', 'Hund14016' => 'sun', 'Hund16464' => 'sun', 'Lalb_Chr09g0333391' => 'lal', 'Lalb_Chr11g0070461' => 'lal', 'Lalb_Chr12g0201671' => 'lal', 'Lalb_Chr13g0297161' => 'lal', 'Lj1g0002823' => 'lja', 'Lj3C1074T6' => 'lonja', 'Lj4A212T28' => 'lonja', 'Lj4g0005516' => 'lja', 'Lj4g0013705' => 'lja', 'Lj4g0027865' => 'lja', 'Lj5C92G16' => 'lonja', 'Lj5C92T12' => 'lonja', 'Lj7C596T3' => 'lonja', 'Lj9A446G59' => 'lonja', 'Lj9A482G21' => 'lonja', 'Lsat_1_v5_gn_1_28261' => 'lsa', 'Lsat_1_v5_gn_1_28281' => 'lsa', 'Lsat_1_v5_gn_1_32721' => 'lsa', 'Lsat_1_v5_gn_4_151760' => 'lsa', 'Lsat_1_v5_gn_4_2120' => 'lsa', 'Lsat_1_v5_gn_4_75761' => 'lsa', 'Lsat_1_v5_gn_5_10920' => 'lsa', 'Manes.02G099900' => 'mes', 'Manes.11G096200' => 'mes', 'Manes.12G007200' => 'mes', 'Manes.14G048300' => 'mes', 'Manes.17G114700' => 'mes', 'Mapoly0002s0070' => 'mpo', 'Mapoly0029s0099' => 'mpo', 'MBI07_g24742_MAGBIO' => 'mbi', 'MBI10_g27988_MAGBIO' => 'mbi', 'MBI11_g13057_MAGBIO' => 'mbi', 'MD02G1137200' => 'mdo', 'MD06G1137200' => 'mdo', 'MD07G1122300' => 'mdo', 'MD09G1078200' => 'mdo', 'MD13G1123700' => 'mdo', 'MD14G1151900' => 'mdo', 'MD17G1030900' => 'mdo', 'MD17G1068200' => 'mdo', 'MD17G1068600' => 'mdo', 'Medtr3g077540' => 'mtr', 'Medtr4g105530' => 'mtr', 'Medtr8g076580' => 'mtr', 'Medtr8g076590' => 'mtr', 'Medtr8g096410' => 'mtr', 'MELO3C016411.2' => 'cme', 'MELO3C017780.2' => 'cme', 'MELO3C022560.2' => 'cme', 'MELO3C026187.2' => 'cme', 'MELO3C026286.2' => 'cme', 'MELO3C032854.2' => 'cme', 'Migut.H02495' => 'egut', 'Migut.I00561' => 'egut', 'Migut.K01015' => 'egut', 'Migut.K01016' => 'egut', 'Migut.L00743' => 'egut', 'Migut.L00744' => 'egut', 'Migut.L00746' => 'egut', 'Migut.L00798' => 'egut', 'Migut.L00799' => 'egut', 'Migut.N02096' => 'egut', 'MSTRG.11259' => 'ama', 'MSTRG.23142' => 'ama', 'MSTRG.2499' => 'ama', 'Nitab4.5_0000003g0730' => 'nta', 'Nitab4.5_0000137g0020' => 'nta', 'Nitab4.5_0000721g0210' => 'nta', 'Nitab4.5_0000723g0050' => 'nta', 'Nitab4.5_0000913g0070' => 'nta', 'Nitab4.5_0001332g0040' => 'nta', 'Nitab4.5_0001771g0050' => 'nta', 'Nitab4.5_0001918g0050' => 'nta', 'Nitab4.5_0002686g0030' => 'nta', 'Nitab4.5_0003156g0020' => 'nta', 'Nitab4.5_0003383g0040' => 'nta', 'Nitab4.5_0003918g0010' => 'nta', 'Nitab4.5_0006760g0010' => 'nta', 'Nn1g05981' => 'nnu', 'Nn1g06288' => 'nnu', 'Nn3g16371' => 'nnu', 'Nn3g16786' => 'nnu', 'Nn4g22232' => 'nnu', 'Oeu005144.1' => 'oeu', 'Oeu005145.1' => 'oeu', 'Oeu011348.1' => 'oeu', 'Oeu016415.1' => 'oeu', 'Oeu023501.1' => 'oeu', 'Oeu044473.1' => 'oeu', 'Oeu048892.2' => 'oeu', 'Os01g0549200' => 'osa', 'Os02g0469300' => 'osa', 'Os04g0311100' => 'osa', 'Os06g0474900' => 'osa', 'Os10g0181700' => 'osa', 'Os11g0454800' => 'osa', 'Peaxi162Scf00037g00714' => 'pax', 'Peaxi162Scf00084g01217' => 'pax', 'Peaxi162Scf00257g00217' => 'pax', 'Peaxi162Scf00516g00215' => 'pax', 'Peaxi162Scf00689g00123' => 'pax', 'PGR044G2719' => 'pgr', 'PGR083G1360' => 'pgr', 'PGR102G2849' => 'pgr', 'PGR119G2534' => 'pgr', 'PGSC0003DMG400003538' => 'stu', 'PGSC0003DMG400028138' => 'stu', 'PGSC0003DMG400031732' => 'stu', 'PGSC0003DMG400038165' => 'stu', 'Phvul.002G284600' => 'pvu', 'Phvul.003G258200' => 'pvu', 'Phvul.009G176500' => 'pvu', 'Potri.003G167201' => 'ptr', 'Potri.005G118400' => 'ptr', 'Potri.012G089000' => 'ptr', 'Potri.012G102800' => 'ptr', 'Potri.015G079400' => 'ptr', 'Potri.015G100900' => 'ptr', 'Pp3c14_9810' => 'ppa', 'Pp3c15_10450' => 'ppa', 'Pp3c20_19150' => 'ppa', 'Pp3c23_12740' => 'ppa', 'Pp3c23_6310' => 'ppa', 'Pp3c24_3720' => 'ppa', 'Pp3c27_2580' => 'ppa', 'Pp3c9_8990' => 'ppa', 'PRCOL_00002854' => 'pco', 'Prupe.1G221200' => 'ppe', 'Prupe.3G289000' => 'ppe', 'Prupe.5G147000' => 'ppe', 'Prupe.6G157300' => 'ppe', 'Prupe.7G163400' => 'ppe', 'Psat0s2177g0040' => 'psa', 'Psat3g174760' => 'psa', 'Psat3g192160' => 'psa', 'Psat4g058520' => 'psa', 'Psat4g096840' => 'psa', 'Psat7g037320' => 'psa', 'PSO017G1274' => 'pso', 'PSO017G5166' => 'pso', 'PSO063G4558' => 'pso', 'PSO170G4458' => 'pso', 'PSO170G5005' => 'pso', 'PSO210G6156' => 'pso', 'PSO210G6635' => 'pso', 'PSO210G7397' => 'pso', 'PSO210G7700' => 'pso', 'PSO455G0035' => 'pso', 'PSO455G0180' => 'pso', 'PSO478G4515' => 'pso', 'PSO832G1305' => 'pso', 'PSO832G3489' => 'pso', 'QL02p075247' => 'qlo', 'QL03p051148' => 'qlo', 'QL05p010313' => 'qlo', 'QL06p034627' => 'qlo', 'QL10p001889' => 'qlo', 'QL10p010846' => 'qlo', 'RcHm_v2.0_Chr1g0350621' => 'rch', 'RcHm_v2.0_Chr1g0350641' => 'rch', 'RcHm_v2.0_Chr2g0092891' => 'rch', 'RcHm_v2.0_Chr2g0100251' => 'rch', 'RcHm_v2.0_Chr2g0158661' => 'rch', 'RcHm_v2.0_Chr2g0172741' => 'rch', 'RcHm_v2.0_Chr4g0429571' => 'rch', 'RcHm_v2.0_Chr5g0042471' => 'rch', 'RcHm_v2.0_Chr7g0189451' => 'rch', 'Rhsim08G0052000' => 'rsi', 'Rhsim08G0174400' => 'rsi', 'Rhsim08G0193200' => 'rsi', 'Rhsim10G0214800' => 'rsi', 'Rhsim10G0214900' => 'rsi', 'Rhsim10G0215000' => 'rsi', 'Rhsim12G0022900' => 'rsi', 'Rhsim12G0177500' => 'rsi', 'Rhsim12G0177700' => 'rsi', 'Sabra03G0122600' => 'sbr', 'Sabra05G0097400' => 'sbr', 'Sabra12G0064100' => 'sbr', 'Sabra15G0121300' => 'sbr', 'SalBow2G0642' => 'sbo', 'SalBow5G2667' => 'sbo', 'SalBow5G4873' => 'sbo', 'SalBow8G2395' => 'sbo', 'Sc03g0003290' => 'sci', 'Sc10g0010130' => 'sci', 'Sc22g0003650' => 'sci', 'Sed0001603' => 'sed', 'Sed0004259' => 'sed', 'Sed0006789' => 'sed', 'Sed0011838' => 'sed', 'Sed0012964' => 'sed', 'Sed0016383' => 'sed', 'Sed0019010' => 'sed', 'Sed0020188' => 'sed', 'SEGI_04702' => 'sgi', 'SEGI_17231' => 'sgi', 'SEGI_18877' => 'sgi', 'SEGI_25196' => 'sgi', 'SEGI_25515' => 'sgi', 'SEGI_28445' => 'sgi', 'SEGI_37452' => 'sgi', 'SGA_v2.0_scaffold188G40336' => 'sas', 'SGA_v2.0_scaffold228G43247' => 'sas', 'SGA_v2.0_scaffold280G46853' => 'sas', 'SGA_v2.0_scaffold34G13808' => 'sas', 'SGA_v2.0_scaffold40G15576' => 'sas', 'SGA_v2.0_scaffold611G53188' => 'sas', 'SGA_v2.0_scaffold78G25461' => 'sas', 'SGA_v2.0_scaffold90G27888' => 'sas', 'SHI08601' => 'shi', 'SHI08606' => 'shi', 'SHI17117' => 'shi', 'SHI17119' => 'shi', 'SMO118G0201' => 'smo', 'SMO169G0247' => 'smo', 'SMO176G0006' => 'smo', 'SMO176G0015' => 'smo', 'SMO202G0006' => 'smo', 'SMO240G0050' => 'smo', 'SMO286G0009' => 'smo', 'SMO338G0033' => 'smo', 'SMO356G0533' => 'smo', 'SMO364G0382' => 'smo', 'SMO367G0166' => 'smo', 'SMO367G1098' => 'smo', 'Solyc01g009920.3' => 'sly', 'Solyc01g099300.3' => 'sly', 'Solyc02g084700.3' => 'sly', 'Solyc03g097520.3' => 'sly', 'Solyc06g071580.3' => 'sly', 'Solyc10g081760.3' => 'sly', 'Sopen01g005480' => 'spe', 'Sopen01g042850' => 'spe', 'Sopen02g029370' => 'spe', 'Sopen03g028280' => 'spe', 'Sopen06g027870' => 'spe', 'Sopen10g032270' => 'spe', 'Sp5g18180' => 'spa', 'Sp6g12880' => 'spa', 'Sp6g30850' => 'spa', 'Sp7g22960' => 'spa', 'Sp7g34010' => 'spa', 'SpUn1326_0010' => 'spa', 'TAR371G0242' => 'tar', 'TAR622G0638' => 'tar', 'TAR628G1548' => 'tar', 'TAR629G1079' => 'tar', 'TAR629G3413' => 'tar', 'THA.LOC104804249' => 'tha', 'THA.LOC104808315' => 'tha', 'THA.LOC104809238' => 'tha', 'THA.LOC104825484' => 'tha', 'Thecc.01G025500' => 'tca', 'Thecc.03G015800' => 'tca', 'Thecc.03G018000' => 'tca', 'Thecc.03G134800' => 'tca', 'Thecc.04G014700' => 'tca', 'Thhalv10006991m.g' => 'esa', 'Thhalv10012707m.g' => 'esa', 'Thhalv10015739m.g' => 'esa', 'Thhalv10024553m.g' => 'esa', 'Thhalv10024673m.g' => 'esa', 'Thhalv10029187m.g' => 'esa', 'TPR.G12971' => 'tpr', 'TPR.G29396' => 'tpr', 'TPR.G33376' => 'tpr', 'TPR.G35508' => 'tpr', 'TPR.G35516' => 'tpr', 'TPR.G37317' => 'tpr', 'TPR.G37389' => 'tpr', 'TPR.G37523' => 'tpr', 'TPR.G559' => 'tpr', 'TWI14G0070' => 'twi', 'TWI14G0729' => 'twi', 'TWI18G0596' => 'twi', 'TWI39G0780' => 'twi', 'TWI39G0850' => 'twi', 'TWI73G1052' => 'twi', 'unitig_52.g17485' => 'ugi', 'unitig_61.g26355' => 'ugi', 'vmacro01040' => 'vma', 'vmacro16731' => 'vma', 'vmacro18270' => 'vma', 'vmacro19142' => 'vma', 'vmacro19407' => 'vma', 'vmacro19408' => 'vma', 'vmacro21899' => 'vma', 'vmacro21900' => 'vma', 'vmacro21901' => 'vma', 'VMungo0251G0490' => 'vmu', 'VMungo0251G1748' => 'vmu', 'VMungo1309G0421' => 'vmu', 'Zm00001eb086500' => 'zma', 'Zm00001eb150680' => 'zma', 'Zm00001eb162330' => 'zma', 'Zm00001eb203130' => 'zma', 'Zm00001eb369480' => 'zma', 'Zm00001eb382340' => 'zma', 'Zm00001eb416360' => 'zma' ) $gf_id = 'HOM05D000902' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000902' ) $data_identifier = 'HOM05D000902' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 13, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 10, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 6, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 9, 'hma' => (int) 12, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 4, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 6, 'ppa' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 6, 'rch' => (int) 9, 'rsi' => (int) 9, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 12, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 3, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416360' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000902', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '663', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02470' => 'bna', 'A01p16260' => 'bna', 'A02p01680' => 'bna', 'A03p16600' => 'bna', 'A03p55660' => 'bna', 'A03p64160' => 'bna', 'A03p64170' => 'bna', 'A08p31900' => 'bna', 'A09p59530' => 'bna', 'A10p08230' => 'bna', 'A10p25090' => 'bna', 'Aa31LG3G7100' => 'aar', 'Aa31LG3G7110' => 'aar', 'Aa31LG6G13160' => 'aar', 'Aa31LG7G10770' => 'aar', 'Aa31LG7G3830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2723' => 'aag', 'Actinidia08045' => 'ach', 'Actinidia08888' => 'ach', 'Actinidia18333' => 'ach', 'Actinidia19334' => 'ach', 'Actinidia25552' => 'ach', 'Actinidia26089' => 'ach', 'Actinidia30615' => 'ach', 'Actinidia30616' => 'ach', 'Actinidia33083' => 'ach', 'Actinidia35762' => 'ach', 'Ah.02g110620' => 'amhyb', 'Ah.11g046390' => 'amhyb', 'AL1G31670' => 'aly', 'AL6G23730' => 'aly', 'AL7G14740' => 'aly', 'AL7G14750' => 'aly', 'AL7G14760' => 'aly', 'AL7G28220' => 'aly', 'AL8G24940' => 'aly', 'Aqoxy3G01665' => 'aox', 'Aqoxy3G02853' => 'aox', 'Aqoxy5G01513' => 'aox', 'Aqoxy5G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8SKA4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ75LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKDA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0LJZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7REX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZP4YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWX7I5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2QKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS0L9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPCD8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q161UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC7XCF' => 'arhy', 'AT1G19100' => 'ath', 'AT4G24970' => 'ath', 'AT4G36270' => 'ath', 'AT4G36280' => 'ath', 'AT4G36290' => 'ath', 'AT5G13130' => 'ath', 'AT5G50780' => 'ath', 'ATR0582G266' => 'atr', 'ATR0661G195' => 'atr', 'ATR1152G031' => 'atr', 'Atru.chr11.2382' => 'acertr', 'Atru.chr12.2337' => 'acertr', 'Atru.chr3.744' => 'acertr', 'Atru.chr6.1870' => 'acertr', 'Atru.chr9.2515' => 'acertr', 'AUR62004120' => 'cqu', 'AUR62005667' => 'cqu', 'AUR62007634' => 'cqu', 'AUR62008186' => 'cqu', 'AUR62008187' => 'cqu', 'AUR62008188' => 'cqu', 'AUR62027954' => 'cqu', 'AUR62028766' => 'cqu', 'AUR62028767' => 'cqu', 'AUR62028768' => 'cqu', 'AUR62028886' => 'cqu', 'AUR62029563' => 'cqu', 'AUR62038832' => 'cqu', 'BcaB01g04149' => 'bca', 'BcaB03g12940' => 'bca', 'BcaB03g13090' => 'bca', 'BcaB03g14466' => 'bca', 'BcaB05g24035' => 'bca', 'BcaC01g06050' => 'bca', 'BcaC04g19148' => 'bca', 'BcaC04g20761' => 'bca', 'BcaC06g32845' => 'bca', 'BcaC07g41274' => 'bca', 'BcaC09g50827' => 'bca', 'BcaNung00741' => 'bca', 'BcaNung00742' => 'bca', 'BcaNung01859' => 'bca', 'BcaNung03985' => 'bca', 'BcaNung03989' => 'bca', 'BcaNung05661' => 'bca', 'BolC1t00257H' => 'bol', 'BolC1t01956H' => 'bol', 'BolC2t06534H' => 'bol', 'BolC3t14334H' => 'bol', 'BolC5t30451H' => 'bol', 'BolC7t45880H' => 'bol', 'BolC7t46586H' => 'bol', 'BolC8t49301H' => 'bol', 'BolC8t51837H' => 'bol', 'BolC9t56822H' => 'bol', 'BolC9t59235H' => 'bol', 'BraA01t00234Z' => 'bra', 'BraA01t01563Z' => 'bra', 'BraA02t05147Z' => 'bra', 'BraA03t10947Z' => 'bra', 'BraA03t14633Z' => 'bra', 'BraA08t35112Z' => 'bra', 'BraA09t41330Z' => 'bra', 'BraA10t44570Z' => 'bra', 'C01p02670' => 'bna', 'C01p20260' => 'bna', 'C02p05890' => 'bna', 'C03p19530' => 'bna', 'C05p17470' => 'bna', 'C07p53900' => 'bna', 'C07p61630' => 'bna', 'C08p16800' => 'bna', 'C08p42810' => 'bna', 'C09p39480' => 'bna', 'C09p63980' => 'bna', 'CAN.G1001.7' => 'can', 'CAN.G1034.55' => 'can', 'CAN.G143.7' => 'can', 'CAN.G3340.1' => 'can', 'CAN.G358.19' => 'can', 'CAN.G373.2' => 'can', 'CAN.G674.16' => 'can', 'CAN.G674.17' => 'can', 'CAN.G674.18' => 'can', 'CAN.G732.2' => 'can', 'CAN.G732.3' => 'can', 'CAN.G993.39' => 'can', 'CANSAT01G2052' => 'cansat', 'CANSAT80G0070' => 'cansat', 'CANSAT80G0483' => 'cansat', 'CANSAT80G0625' => 'cansat', 'CARHR019690' => 'chi', 'CARHR080280' => 'chi', 'CARHR152750' => 'chi', 'CARHR152760' => 'chi', 'CARHR152770' => 'chi', 'CARHR200340' => 'chi', 'CARHR232370' => 'chi', 'CARHR244670' => 'chi', 'CARHR244680' => 'chi', 'CARHR257520' => 'chi', 'Carub.0001s1872' => 'cru', 'Carub.0006s1130' => 'cru', 'Carub.0007s0396' => 'cru', 'Carub.0007s0397' => 'cru', 'Carub.0007s1608' => 'cru', 'Carub.0008s1068' => 'cru', 'Carub.0008s1077' => 'cru', 'Ca_16158_v3' => 'car', 'Ca_17571_v3' => 'car', 'Ca_21936_v3' => 'car', 'Ca_22350_v3' => 'car', 'CBR_g22445' => 'cbr', 'CBR_g26290' => 'cbr', 'Cc04_g09610' => 'ccan', 'Cc04_g12280' => 'ccan', 'Cc07_g10230' => 'ccan', 'CDE02G0093' => 'cde', 'CDE02G0701' => 'cde', 'CDE04G1050' => 'cde', 'CDE05G1833' => 'cde', 'CDE05G3058' => 'cde', 'CDE05G3380' => 'cde', 'CDE06G0536' => 'cde', 'Cfa006923' => 'cfa', 'Cfa009402' => 'cfa', 'Cfa018751' => 'cfa', 'Cfa019164' => 'cfa', 'Cfa022935' => 'cfa', 'Ciclev10019081m.g' => 'ccl', 'Ciclev10025076m.g' => 'ccl', 'Ciclev10030712m.g' => 'ccl', 'Ciclev10033760m.g' => 'ccl', 'CiPaw.05G105600' => 'cil', 'CiPaw.08G136700' => 'cil', 'CiPaw.11G003900' => 'cil', 'CiPaw.11G023700' => 'cil', 'CiPaw.12G003700' => 'cil', 'ClCG06G017100' => 'cla', 'ClCG06G018110' => 'cla', 'ClCG07G008800' => 'cla', 'ClCG07G015330' => 'cla', 'COL.COLO4_13698' => 'col', 'COL.COLO4_16659' => 'col', 'COL.COLO4_21986' => 'col', 'COL.COLO4_24049' => 'col', 'COL.COLO4_29061' => 'col', 'COL.COLO4_29075' => 'col', 'COL.COLO4_30094' => 'col', 'Cpa.g.c33689' => 'cpa', 'Cpa.g.sc108.39' => 'cpa', 'Cpa.g.sc108.41' => 'cpa', 'Cpa.g.sc1163.1' => 'cpa', 'Cpa.g.sc4.155' => 'cpa', 'Cpa.g.sc6.194' => 'cpa', 'CsaV3_1G000340' => 'csa', 'CsaV3_1G001400' => 'csa', 'CsaV3_4G002220' => 'csa', 'CsaV3_4G005370' => 'csa', 'CSS0007487' => 'camsi', 'CSS0008066' => 'camsi', 'CSS0009120' => 'camsi', 'CSS0015512' => 'camsi', 'CSS0022409' => 'camsi', 'CSS0025358' => 'camsi', 'CSS0044547' => 'camsi', 'DCAR_013057' => 'dca', 'DCAR_015058' => 'dca', 'DCAR_016027' => 'dca', 'DCAR_017327' => 'dca', 'DCAR_020743' => 'dca', 'DCAR_026157' => 'dca', 'DCAR_032339' => 'dca', 'DCAR_032340' => 'dca', 'Dinv11200' => 'din', 'Dinv11201' => 'din', 'Dinv20631' => 'din', 'Dinv23182' => 'din', 'Dinv33466' => 'din', 'Dinv33583' => 'din', 'Dinv38565' => 'din', 'Duzib068G0200' => 'dzi', 'Duzib147G0132' => 'dzi', 'Duzib147G0635' => 'dzi', 'Duzib205G1670' => 'dzi', 'Duzib251G0606' => 'dzi', 'ECA232G3336' => 'eca', 'ECA232G3763' => 'eca', 'ECA232G4845' => 'eca', 'ECA234G1607' => 'eca', 'ECA246G0932' => 'eca', 'ECA247G0781' => 'eca', 'ECA247G1932' => 'eca', 'ECA247G2079' => 'eca', 'ECA247G3338' => 'eca', 'ECA247G4115' => 'eca', 'EL10Ac3g06552' => 'bvu', 'EL10Ac5g10721' => 'bvu', 'EL10Ac5g10722' => 'bvu', 'EL10Ac5g10723' => 'bvu', 'EL10Ac5g11361' => 'bvu', 'EL10Ac6g13553' => 'bvu', 'EL10As8g23872' => 'bvu', 'Eucgr.B00250' => 'egr', 'Eucgr.B00251' => 'egr', 'Eucgr.B03533' => 'egr', 'Eucgr.I02381' => 'egr', 'Eucgr.K02700' => 'egr', 'FAN02G0174' => 'fan', 'FAN02G3146' => 'fan', 'FAN04G1672' => 'fan', 'FAN04G2273' => 'fan', 'FAN05G2791' => 'fan', 'FAN05G4035' => 'fan', 'FAN07G0834' => 'fan', 'FAN08G1198' => 'fan', 'FAN09G4182' => 'fan', 'FAN12G0496' => 'fan', 'FAN13G1027' => 'fan', 'FAN13G2951' => 'fan', 'FAN14G0705' => 'fan', 'FAN14G0720' => 'fan', 'FAN17G0201' => 'fan', 'FAN17G2665' => 'fan', 'FAN18G1456' => 'fan', 'FAN18G1525' => 'fan', 'FAN18G3500' => 'fan', 'FAN28G2670' => 'fan', 'FvH4_1g12391' => 'fve', 'FvH4_4g23220' => 'fve', 'FvH4_5g08810' => 'fve', 'FvH4_5g28960' => 'fve', 'FvH4_6g42820' => 'fve', 'FvH4_6g51110' => 'fve', 'Glyma.02G051802' => 'gma', 'Glyma.04G185300' => 'gma', 'Glyma.05G202900' => 'gma', 'Glyma.08G010300' => 'gma', 'Glyma.16G131900' => 'gma', 'Glyma.17G087900' => 'gma', 'Gohir.A07G048600' => 'ghi', 'Gohir.A11G179000' => 'ghi', 'Gohir.A12G140900' => 'ghi', 'Gohir.A12G140950' => 'ghi', 'Gohir.A12G191700' => 'ghi', 'Gohir.A13G086300' => 'ghi', 'Gohir.D07G052900' => 'ghi', 'Gohir.D11G186600' => 'ghi', 'Gohir.D12G145575' => 'ghi', 'Gohir.D12G145650' => 'ghi', 'Gohir.D12G145725' => 'ghi', 'Gohir.D12G194050' => 'ghi', 'Gohir.D13G091800' => 'ghi', 'Gorai.001G055900' => 'gra', 'Gorai.007G198400' => 'gra', 'Gorai.008G157000' => 'gra', 'Gorai.008G157100' => 'gra', 'Gorai.008G208700' => 'gra', 'Gorai.010G138700' => 'gra', 'GSVIVG01000977001' => 'vvi', 'GSVIVG01007708001' => 'vvi', 'GSVIVG01008587001' => 'vvi', 'GSVIVG01018849001' => 'vvi', 'GSVIVG01032432001' => 'vvi', 'HanXRQChr02g0034131' => 'han', 'HanXRQChr02g0035981' => 'han', 'HanXRQChr02g0035991' => 'han', 'HanXRQChr05g0155611' => 'han', 'HanXRQChr05g0155621' => 'han', 'HanXRQChr08g0236501' => 'han', 'HanXRQChr09g0261321' => 'han', 'HanXRQChr09g0272081' => 'han', 'HanXRQChr10g0310741' => 'han', 'HanXRQChr11g0325591' => 'han', 'HanXRQChr12g0385691' => 'han', 'HanXRQChr13g0387801' => 'han', 'HanXRQChr15g0463011' => 'han', 'Haze_03826' => 'cav', 'Haze_03827' => 'cav', 'Haze_07183' => 'cav', 'Haze_07537' => 'cav', 'Haze_07539' => 'cav', 'Haze_12461' => 'cav', 'Haze_16115' => 'cav', 'Haze_16808' => 'cav', 'Haze_18531' => 'cav', 'Hma1.2p1_0046F.1_g026700' => 'hma', 'Hma1.2p1_0046F.1_g026710' => 'hma', 'Hma1.2p1_0168F.1_g074340' => 'hma', 'Hma1.2p1_0266F.1_g107030' => 'hma', 'Hma1.2p1_0266F.1_g107060' => 'hma', 'Hma1.2p1_0275F.1_g110510' => 'hma', 'Hma1.2p1_0592F.1_g185490' => 'hma', 'Hma1.2p1_0592F.1_g185500' => 'hma', 'Hma1.2p1_0592F.1_g185510' => 'hma', 'Hma1.2p1_0592F.1_g185520' => 'hma', 'Hma1.2p1_0592F.1_g185530' => 'hma', 'Hma1.2p1_0818F.1_g223450' => 'hma', 'HPP92_009708' => 'vpl', 'HPP92_009793' => 'vpl', 'HPP92_009796' => 'vpl', 'HPP92_009797' => 'vpl', 'HPP92_014940' => 'vpl', 'HPP92_014988' => 'vpl', 'Hund02463' => 'sun', 'Hund02760' => 'sun', 'Hund05071' => 'sun', 'Hund10108' => 'sun', 'Hund11204' => 'sun', 'Hund14016' => 'sun', 'Hund16464' => 'sun', 'Lalb_Chr09g0333391' => 'lal', 'Lalb_Chr11g0070461' => 'lal', 'Lalb_Chr12g0201671' => 'lal', 'Lalb_Chr13g0297161' => 'lal', 'Lj1g0002823' => 'lja', 'Lj3C1074T6' => 'lonja', 'Lj4A212T28' => 'lonja', 'Lj4g0005516' => 'lja', 'Lj4g0013705' => 'lja', 'Lj4g0027865' => 'lja', 'Lj5C92G16' => 'lonja', 'Lj5C92T12' => 'lonja', 'Lj7C596T3' => 'lonja', 'Lj9A446G59' => 'lonja', 'Lj9A482G21' => 'lonja', 'Lsat_1_v5_gn_1_28261' => 'lsa', 'Lsat_1_v5_gn_1_28281' => 'lsa', 'Lsat_1_v5_gn_1_32721' => 'lsa', 'Lsat_1_v5_gn_4_151760' => 'lsa', 'Lsat_1_v5_gn_4_2120' => 'lsa', 'Lsat_1_v5_gn_4_75761' => 'lsa', 'Lsat_1_v5_gn_5_10920' => 'lsa', 'Manes.02G099900' => 'mes', 'Manes.11G096200' => 'mes', 'Manes.12G007200' => 'mes', 'Manes.14G048300' => 'mes', 'Manes.17G114700' => 'mes', 'Mapoly0002s0070' => 'mpo', 'Mapoly0029s0099' => 'mpo', 'MBI07_g24742_MAGBIO' => 'mbi', 'MBI10_g27988_MAGBIO' => 'mbi', 'MBI11_g13057_MAGBIO' => 'mbi', 'MD02G1137200' => 'mdo', 'MD06G1137200' => 'mdo', 'MD07G1122300' => 'mdo', 'MD09G1078200' => 'mdo', 'MD13G1123700' => 'mdo', 'MD14G1151900' => 'mdo', 'MD17G1030900' => 'mdo', 'MD17G1068200' => 'mdo', 'MD17G1068600' => 'mdo', 'Medtr3g077540' => 'mtr', 'Medtr4g105530' => 'mtr', 'Medtr8g076580' => 'mtr', 'Medtr8g076590' => 'mtr', 'Medtr8g096410' => 'mtr', 'MELO3C016411.2' => 'cme', 'MELO3C017780.2' => 'cme', 'MELO3C022560.2' => 'cme', 'MELO3C026187.2' => 'cme', 'MELO3C026286.2' => 'cme', 'MELO3C032854.2' => 'cme', 'Migut.H02495' => 'egut', 'Migut.I00561' => 'egut', 'Migut.K01015' => 'egut', 'Migut.K01016' => 'egut', 'Migut.L00743' => 'egut', 'Migut.L00744' => 'egut', 'Migut.L00746' => 'egut', 'Migut.L00798' => 'egut', 'Migut.L00799' => 'egut', 'Migut.N02096' => 'egut', 'MSTRG.11259' => 'ama', 'MSTRG.23142' => 'ama', 'MSTRG.2499' => 'ama', 'Nitab4.5_0000003g0730' => 'nta', 'Nitab4.5_0000137g0020' => 'nta', 'Nitab4.5_0000721g0210' => 'nta', 'Nitab4.5_0000723g0050' => 'nta', 'Nitab4.5_0000913g0070' => 'nta', 'Nitab4.5_0001332g0040' => 'nta', 'Nitab4.5_0001771g0050' => 'nta', 'Nitab4.5_0001918g0050' => 'nta', 'Nitab4.5_0002686g0030' => 'nta', 'Nitab4.5_0003156g0020' => 'nta', 'Nitab4.5_0003383g0040' => 'nta', 'Nitab4.5_0003918g0010' => 'nta', 'Nitab4.5_0006760g0010' => 'nta', 'Nn1g05981' => 'nnu', 'Nn1g06288' => 'nnu', 'Nn3g16371' => 'nnu', 'Nn3g16786' => 'nnu', 'Nn4g22232' => 'nnu', 'Oeu005144.1' => 'oeu', 'Oeu005145.1' => 'oeu', 'Oeu011348.1' => 'oeu', 'Oeu016415.1' => 'oeu', 'Oeu023501.1' => 'oeu', 'Oeu044473.1' => 'oeu', 'Oeu048892.2' => 'oeu', 'Os01g0549200' => 'osa', 'Os02g0469300' => 'osa', 'Os04g0311100' => 'osa', 'Os06g0474900' => 'osa', 'Os10g0181700' => 'osa', 'Os11g0454800' => 'osa', 'Peaxi162Scf00037g00714' => 'pax', 'Peaxi162Scf00084g01217' => 'pax', 'Peaxi162Scf00257g00217' => 'pax', 'Peaxi162Scf00516g00215' => 'pax', 'Peaxi162Scf00689g00123' => 'pax', 'PGR044G2719' => 'pgr', 'PGR083G1360' => 'pgr', 'PGR102G2849' => 'pgr', 'PGR119G2534' => 'pgr', 'PGSC0003DMG400003538' => 'stu', 'PGSC0003DMG400028138' => 'stu', 'PGSC0003DMG400031732' => 'stu', 'PGSC0003DMG400038165' => 'stu', 'Phvul.002G284600' => 'pvu', 'Phvul.003G258200' => 'pvu', 'Phvul.009G176500' => 'pvu', 'Potri.003G167201' => 'ptr', 'Potri.005G118400' => 'ptr', 'Potri.012G089000' => 'ptr', 'Potri.012G102800' => 'ptr', 'Potri.015G079400' => 'ptr', 'Potri.015G100900' => 'ptr', 'Pp3c14_9810' => 'ppa', 'Pp3c15_10450' => 'ppa', 'Pp3c20_19150' => 'ppa', 'Pp3c23_12740' => 'ppa', 'Pp3c23_6310' => 'ppa', 'Pp3c24_3720' => 'ppa', 'Pp3c27_2580' => 'ppa', 'Pp3c9_8990' => 'ppa', 'PRCOL_00002854' => 'pco', 'Prupe.1G221200' => 'ppe', 'Prupe.3G289000' => 'ppe', 'Prupe.5G147000' => 'ppe', 'Prupe.6G157300' => 'ppe', 'Prupe.7G163400' => 'ppe', 'Psat0s2177g0040' => 'psa', 'Psat3g174760' => 'psa', 'Psat3g192160' => 'psa', 'Psat4g058520' => 'psa', 'Psat4g096840' => 'psa', 'Psat7g037320' => 'psa', 'PSO017G1274' => 'pso', 'PSO017G5166' => 'pso', 'PSO063G4558' => 'pso', 'PSO170G4458' => 'pso', 'PSO170G5005' => 'pso', 'PSO210G6156' => 'pso', 'PSO210G6635' => 'pso', 'PSO210G7397' => 'pso', 'PSO210G7700' => 'pso', 'PSO455G0035' => 'pso', 'PSO455G0180' => 'pso', 'PSO478G4515' => 'pso', 'PSO832G1305' => 'pso', 'PSO832G3489' => 'pso', 'QL02p075247' => 'qlo', 'QL03p051148' => 'qlo', 'QL05p010313' => 'qlo', 'QL06p034627' => 'qlo', 'QL10p001889' => 'qlo', 'QL10p010846' => 'qlo', 'RcHm_v2.0_Chr1g0350621' => 'rch', 'RcHm_v2.0_Chr1g0350641' => 'rch', 'RcHm_v2.0_Chr2g0092891' => 'rch', 'RcHm_v2.0_Chr2g0100251' => 'rch', 'RcHm_v2.0_Chr2g0158661' => 'rch', 'RcHm_v2.0_Chr2g0172741' => 'rch', 'RcHm_v2.0_Chr4g0429571' => 'rch', 'RcHm_v2.0_Chr5g0042471' => 'rch', 'RcHm_v2.0_Chr7g0189451' => 'rch', 'Rhsim08G0052000' => 'rsi', 'Rhsim08G0174400' => 'rsi', 'Rhsim08G0193200' => 'rsi', 'Rhsim10G0214800' => 'rsi', 'Rhsim10G0214900' => 'rsi', 'Rhsim10G0215000' => 'rsi', 'Rhsim12G0022900' => 'rsi', 'Rhsim12G0177500' => 'rsi', 'Rhsim12G0177700' => 'rsi', 'Sabra03G0122600' => 'sbr', 'Sabra05G0097400' => 'sbr', 'Sabra12G0064100' => 'sbr', 'Sabra15G0121300' => 'sbr', 'SalBow2G0642' => 'sbo', 'SalBow5G2667' => 'sbo', 'SalBow5G4873' => 'sbo', 'SalBow8G2395' => 'sbo', 'Sc03g0003290' => 'sci', 'Sc10g0010130' => 'sci', 'Sc22g0003650' => 'sci', 'Sed0001603' => 'sed', 'Sed0004259' => 'sed', 'Sed0006789' => 'sed', 'Sed0011838' => 'sed', 'Sed0012964' => 'sed', 'Sed0016383' => 'sed', 'Sed0019010' => 'sed', 'Sed0020188' => 'sed', 'SEGI_04702' => 'sgi', 'SEGI_17231' => 'sgi', 'SEGI_18877' => 'sgi', 'SEGI_25196' => 'sgi', 'SEGI_25515' => 'sgi', 'SEGI_28445' => 'sgi', 'SEGI_37452' => 'sgi', 'SGA_v2.0_scaffold188G40336' => 'sas', 'SGA_v2.0_scaffold228G43247' => 'sas', 'SGA_v2.0_scaffold280G46853' => 'sas', 'SGA_v2.0_scaffold34G13808' => 'sas', 'SGA_v2.0_scaffold40G15576' => 'sas', 'SGA_v2.0_scaffold611G53188' => 'sas', 'SGA_v2.0_scaffold78G25461' => 'sas', 'SGA_v2.0_scaffold90G27888' => 'sas', 'SHI08601' => 'shi', 'SHI08606' => 'shi', 'SHI17117' => 'shi', 'SHI17119' => 'shi', 'SMO118G0201' => 'smo', 'SMO169G0247' => 'smo', 'SMO176G0006' => 'smo', 'SMO176G0015' => 'smo', 'SMO202G0006' => 'smo', 'SMO240G0050' => 'smo', 'SMO286G0009' => 'smo', 'SMO338G0033' => 'smo', 'SMO356G0533' => 'smo', 'SMO364G0382' => 'smo', 'SMO367G0166' => 'smo', 'SMO367G1098' => 'smo', 'Solyc01g009920.3' => 'sly', 'Solyc01g099300.3' => 'sly', 'Solyc02g084700.3' => 'sly', 'Solyc03g097520.3' => 'sly', 'Solyc06g071580.3' => 'sly', 'Solyc10g081760.3' => 'sly', 'Sopen01g005480' => 'spe', 'Sopen01g042850' => 'spe', 'Sopen02g029370' => 'spe', 'Sopen03g028280' => 'spe', 'Sopen06g027870' => 'spe', 'Sopen10g032270' => 'spe', 'Sp5g18180' => 'spa', 'Sp6g12880' => 'spa', 'Sp6g30850' => 'spa', 'Sp7g22960' => 'spa', 'Sp7g34010' => 'spa', 'SpUn1326_0010' => 'spa', 'TAR371G0242' => 'tar', 'TAR622G0638' => 'tar', 'TAR628G1548' => 'tar', 'TAR629G1079' => 'tar', 'TAR629G3413' => 'tar', 'THA.LOC104804249' => 'tha', 'THA.LOC104808315' => 'tha', 'THA.LOC104809238' => 'tha', 'THA.LOC104825484' => 'tha', 'Thecc.01G025500' => 'tca', 'Thecc.03G015800' => 'tca', 'Thecc.03G018000' => 'tca', 'Thecc.03G134800' => 'tca', 'Thecc.04G014700' => 'tca', 'Thhalv10006991m.g' => 'esa', 'Thhalv10012707m.g' => 'esa', 'Thhalv10015739m.g' => 'esa', 'Thhalv10024553m.g' => 'esa', 'Thhalv10024673m.g' => 'esa', 'Thhalv10029187m.g' => 'esa', 'TPR.G12971' => 'tpr', 'TPR.G29396' => 'tpr', 'TPR.G33376' => 'tpr', 'TPR.G35508' => 'tpr', 'TPR.G35516' => 'tpr', 'TPR.G37317' => 'tpr', 'TPR.G37389' => 'tpr', 'TPR.G37523' => 'tpr', 'TPR.G559' => 'tpr', 'TWI14G0070' => 'twi', 'TWI14G0729' => 'twi', 'TWI18G0596' => 'twi', 'TWI39G0780' => 'twi', 'TWI39G0850' => 'twi', 'TWI73G1052' => 'twi', 'unitig_52.g17485' => 'ugi', 'unitig_61.g26355' => 'ugi', 'vmacro01040' => 'vma', 'vmacro16731' => 'vma', 'vmacro18270' => 'vma', 'vmacro19142' => 'vma', 'vmacro19407' => 'vma', 'vmacro19408' => 'vma', 'vmacro21899' => 'vma', 'vmacro21900' => 'vma', 'vmacro21901' => 'vma', 'VMungo0251G0490' => 'vmu', 'VMungo0251G1748' => 'vmu', 'VMungo1309G0421' => 'vmu', 'Zm00001eb086500' => 'zma', 'Zm00001eb150680' => 'zma', 'Zm00001eb162330' => 'zma', 'Zm00001eb203130' => 'zma', 'Zm00001eb369480' => 'zma', 'Zm00001eb382340' => 'zma', 'Zm00001eb416360' => 'zma' ), 'gf_id' => 'HOM05D000902', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000902' ), 'data_identifier' => 'HOM05D000902', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000902', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '663', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02470' => 'bna', 'A01p16260' => 'bna', 'A02p01680' => 'bna', 'A03p16600' => 'bna', 'A03p55660' => 'bna', 'A03p64160' => 'bna', 'A03p64170' => 'bna', 'A08p31900' => 'bna', 'A09p59530' => 'bna', 'A10p08230' => 'bna', 'A10p25090' => 'bna', 'Aa31LG3G7100' => 'aar', 'Aa31LG3G7110' => 'aar', 'Aa31LG6G13160' => 'aar', 'Aa31LG7G10770' => 'aar', 'Aa31LG7G3830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2723' => 'aag', 'Actinidia08045' => 'ach', 'Actinidia08888' => 'ach', 'Actinidia18333' => 'ach', 'Actinidia19334' => 'ach', 'Actinidia25552' => 'ach', 'Actinidia26089' => 'ach', 'Actinidia30615' => 'ach', 'Actinidia30616' => 'ach', 'Actinidia33083' => 'ach', 'Actinidia35762' => 'ach', 'Ah.02g110620' => 'amhyb', 'Ah.11g046390' => 'amhyb', 'AL1G31670' => 'aly', 'AL6G23730' => 'aly', 'AL7G14740' => 'aly', 'AL7G14750' => 'aly', 'AL7G14760' => 'aly', 'AL7G28220' => 'aly', 'AL8G24940' => 'aly', 'Aqoxy3G01665' => 'aox', 'Aqoxy3G02853' => 'aox', 'Aqoxy5G01513' => 'aox', 'Aqoxy5G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8SKA4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ75LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKDA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0LJZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7REX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZP4YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWX7I5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2QKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS0L9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPCD8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q161UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC7XCF' => 'arhy', 'AT1G19100' => 'ath', 'AT4G24970' => 'ath', 'AT4G36270' => 'ath', 'AT4G36280' => 'ath', 'AT4G36290' => 'ath', 'AT5G13130' => 'ath', 'AT5G50780' => 'ath', 'ATR0582G266' => 'atr', 'ATR0661G195' => 'atr', 'ATR1152G031' => 'atr', 'Atru.chr11.2382' => 'acertr', 'Atru.chr12.2337' => 'acertr', 'Atru.chr3.744' => 'acertr', 'Atru.chr6.1870' => 'acertr', 'Atru.chr9.2515' => 'acertr', 'AUR62004120' => 'cqu', 'AUR62005667' => 'cqu', 'AUR62007634' => 'cqu', 'AUR62008186' => 'cqu', 'AUR62008187' => 'cqu', 'AUR62008188' => 'cqu', 'AUR62027954' => 'cqu', 'AUR62028766' => 'cqu', 'AUR62028767' => 'cqu', 'AUR62028768' => 'cqu', 'AUR62028886' => 'cqu', 'AUR62029563' => 'cqu', 'AUR62038832' => 'cqu', 'BcaB01g04149' => 'bca', 'BcaB03g12940' => 'bca', 'BcaB03g13090' => 'bca', 'BcaB03g14466' => 'bca', 'BcaB05g24035' => 'bca', 'BcaC01g06050' => 'bca', 'BcaC04g19148' => 'bca', 'BcaC04g20761' => 'bca', 'BcaC06g32845' => 'bca', 'BcaC07g41274' => 'bca', 'BcaC09g50827' => 'bca', 'BcaNung00741' => 'bca', 'BcaNung00742' => 'bca', 'BcaNung01859' => 'bca', 'BcaNung03985' => 'bca', 'BcaNung03989' => 'bca', 'BcaNung05661' => 'bca', 'BolC1t00257H' => 'bol', 'BolC1t01956H' => 'bol', 'BolC2t06534H' => 'bol', 'BolC3t14334H' => 'bol', 'BolC5t30451H' => 'bol', 'BolC7t45880H' => 'bol', 'BolC7t46586H' => 'bol', 'BolC8t49301H' => 'bol', 'BolC8t51837H' => 'bol', 'BolC9t56822H' => 'bol', 'BolC9t59235H' => 'bol', 'BraA01t00234Z' => 'bra', 'BraA01t01563Z' => 'bra', 'BraA02t05147Z' => 'bra', 'BraA03t10947Z' => 'bra', 'BraA03t14633Z' => 'bra', 'BraA08t35112Z' => 'bra', 'BraA09t41330Z' => 'bra', 'BraA10t44570Z' => 'bra', 'C01p02670' => 'bna', 'C01p20260' => 'bna', 'C02p05890' => 'bna', 'C03p19530' => 'bna', 'C05p17470' => 'bna', 'C07p53900' => 'bna', 'C07p61630' => 'bna', 'C08p16800' => 'bna', 'C08p42810' => 'bna', 'C09p39480' => 'bna', 'C09p63980' => 'bna', 'CAN.G1001.7' => 'can', 'CAN.G1034.55' => 'can', 'CAN.G143.7' => 'can', 'CAN.G3340.1' => 'can', 'CAN.G358.19' => 'can', 'CAN.G373.2' => 'can', 'CAN.G674.16' => 'can', 'CAN.G674.17' => 'can', 'CAN.G674.18' => 'can', 'CAN.G732.2' => 'can', 'CAN.G732.3' => 'can', 'CAN.G993.39' => 'can', 'CANSAT01G2052' => 'cansat', 'CANSAT80G0070' => 'cansat', 'CANSAT80G0483' => 'cansat', 'CANSAT80G0625' => 'cansat', 'CARHR019690' => 'chi', 'CARHR080280' => 'chi', 'CARHR152750' => 'chi', 'CARHR152760' => 'chi', 'CARHR152770' => 'chi', 'CARHR200340' => 'chi', 'CARHR232370' => 'chi', 'CARHR244670' => 'chi', 'CARHR244680' => 'chi', 'CARHR257520' => 'chi', 'Carub.0001s1872' => 'cru', 'Carub.0006s1130' => 'cru', 'Carub.0007s0396' => 'cru', 'Carub.0007s0397' => 'cru', 'Carub.0007s1608' => 'cru', 'Carub.0008s1068' => 'cru', 'Carub.0008s1077' => 'cru', 'Ca_16158_v3' => 'car', 'Ca_17571_v3' => 'car', 'Ca_21936_v3' => 'car', 'Ca_22350_v3' => 'car', 'CBR_g22445' => 'cbr', 'CBR_g26290' => 'cbr', 'Cc04_g09610' => 'ccan', 'Cc04_g12280' => 'ccan', 'Cc07_g10230' => 'ccan', 'CDE02G0093' => 'cde', 'CDE02G0701' => 'cde', 'CDE04G1050' => 'cde', 'CDE05G1833' => 'cde', 'CDE05G3058' => 'cde', 'CDE05G3380' => 'cde', 'CDE06G0536' => 'cde', 'Cfa006923' => 'cfa', 'Cfa009402' => 'cfa', 'Cfa018751' => 'cfa', 'Cfa019164' => 'cfa', 'Cfa022935' => 'cfa', 'Ciclev10019081m.g' => 'ccl', 'Ciclev10025076m.g' => 'ccl', 'Ciclev10030712m.g' => 'ccl', 'Ciclev10033760m.g' => 'ccl', 'CiPaw.05G105600' => 'cil', 'CiPaw.08G136700' => 'cil', 'CiPaw.11G003900' => 'cil', 'CiPaw.11G023700' => 'cil', 'CiPaw.12G003700' => 'cil', 'ClCG06G017100' => 'cla', 'ClCG06G018110' => 'cla', 'ClCG07G008800' => 'cla', 'ClCG07G015330' => 'cla', 'COL.COLO4_13698' => 'col', 'COL.COLO4_16659' => 'col', 'COL.COLO4_21986' => 'col', 'COL.COLO4_24049' => 'col', 'COL.COLO4_29061' => 'col', 'COL.COLO4_29075' => 'col', 'COL.COLO4_30094' => 'col', 'Cpa.g.c33689' => 'cpa', 'Cpa.g.sc108.39' => 'cpa', 'Cpa.g.sc108.41' => 'cpa', 'Cpa.g.sc1163.1' => 'cpa', 'Cpa.g.sc4.155' => 'cpa', 'Cpa.g.sc6.194' => 'cpa', 'CsaV3_1G000340' => 'csa', 'CsaV3_1G001400' => 'csa', 'CsaV3_4G002220' => 'csa', 'CsaV3_4G005370' => 'csa', 'CSS0007487' => 'camsi', 'CSS0008066' => 'camsi', 'CSS0009120' => 'camsi', 'CSS0015512' => 'camsi', 'CSS0022409' => 'camsi', 'CSS0025358' => 'camsi', 'CSS0044547' => 'camsi', 'DCAR_013057' => 'dca', 'DCAR_015058' => 'dca', 'DCAR_016027' => 'dca', 'DCAR_017327' => 'dca', 'DCAR_020743' => 'dca', 'DCAR_026157' => 'dca', 'DCAR_032339' => 'dca', 'DCAR_032340' => 'dca', 'Dinv11200' => 'din', 'Dinv11201' => 'din', 'Dinv20631' => 'din', 'Dinv23182' => 'din', 'Dinv33466' => 'din', 'Dinv33583' => 'din', 'Dinv38565' => 'din', 'Duzib068G0200' => 'dzi', 'Duzib147G0132' => 'dzi', 'Duzib147G0635' => 'dzi', 'Duzib205G1670' => 'dzi', 'Duzib251G0606' => 'dzi', 'ECA232G3336' => 'eca', 'ECA232G3763' => 'eca', 'ECA232G4845' => 'eca', 'ECA234G1607' => 'eca', 'ECA246G0932' => 'eca', 'ECA247G0781' => 'eca', 'ECA247G1932' => 'eca', 'ECA247G2079' => 'eca', 'ECA247G3338' => 'eca', 'ECA247G4115' => 'eca', 'EL10Ac3g06552' => 'bvu', 'EL10Ac5g10721' => 'bvu', 'EL10Ac5g10722' => 'bvu', 'EL10Ac5g10723' => 'bvu', 'EL10Ac5g11361' => 'bvu', 'EL10Ac6g13553' => 'bvu', 'EL10As8g23872' => 'bvu', 'Eucgr.B00250' => 'egr', 'Eucgr.B00251' => 'egr', 'Eucgr.B03533' => 'egr', 'Eucgr.I02381' => 'egr', 'Eucgr.K02700' => 'egr', 'FAN02G0174' => 'fan', 'FAN02G3146' => 'fan', 'FAN04G1672' => 'fan', 'FAN04G2273' => 'fan', 'FAN05G2791' => 'fan', 'FAN05G4035' => 'fan', 'FAN07G0834' => 'fan', 'FAN08G1198' => 'fan', 'FAN09G4182' => 'fan', 'FAN12G0496' => 'fan', 'FAN13G1027' => 'fan', 'FAN13G2951' => 'fan', 'FAN14G0705' => 'fan', 'FAN14G0720' => 'fan', 'FAN17G0201' => 'fan', 'FAN17G2665' => 'fan', 'FAN18G1456' => 'fan', 'FAN18G1525' => 'fan', 'FAN18G3500' => 'fan', 'FAN28G2670' => 'fan', 'FvH4_1g12391' => 'fve', 'FvH4_4g23220' => 'fve', 'FvH4_5g08810' => 'fve', 'FvH4_5g28960' => 'fve', 'FvH4_6g42820' => 'fve', 'FvH4_6g51110' => 'fve', 'Glyma.02G051802' => 'gma', 'Glyma.04G185300' => 'gma', 'Glyma.05G202900' => 'gma', 'Glyma.08G010300' => 'gma', 'Glyma.16G131900' => 'gma', 'Glyma.17G087900' => 'gma', 'Gohir.A07G048600' => 'ghi', 'Gohir.A11G179000' => 'ghi', 'Gohir.A12G140900' => 'ghi', 'Gohir.A12G140950' => 'ghi', 'Gohir.A12G191700' => 'ghi', 'Gohir.A13G086300' => 'ghi', 'Gohir.D07G052900' => 'ghi', 'Gohir.D11G186600' => 'ghi', 'Gohir.D12G145575' => 'ghi', 'Gohir.D12G145650' => 'ghi', 'Gohir.D12G145725' => 'ghi', 'Gohir.D12G194050' => 'ghi', 'Gohir.D13G091800' => 'ghi', 'Gorai.001G055900' => 'gra', 'Gorai.007G198400' => 'gra', 'Gorai.008G157000' => 'gra', 'Gorai.008G157100' => 'gra', 'Gorai.008G208700' => 'gra', 'Gorai.010G138700' => 'gra', 'GSVIVG01000977001' => 'vvi', 'GSVIVG01007708001' => 'vvi', 'GSVIVG01008587001' => 'vvi', 'GSVIVG01018849001' => 'vvi', 'GSVIVG01032432001' => 'vvi', 'HanXRQChr02g0034131' => 'han', 'HanXRQChr02g0035981' => 'han', 'HanXRQChr02g0035991' => 'han', 'HanXRQChr05g0155611' => 'han', 'HanXRQChr05g0155621' => 'han', 'HanXRQChr08g0236501' => 'han', 'HanXRQChr09g0261321' => 'han', 'HanXRQChr09g0272081' => 'han', 'HanXRQChr10g0310741' => 'han', 'HanXRQChr11g0325591' => 'han', 'HanXRQChr12g0385691' => 'han', 'HanXRQChr13g0387801' => 'han', 'HanXRQChr15g0463011' => 'han', 'Haze_03826' => 'cav', 'Haze_03827' => 'cav', 'Haze_07183' => 'cav', 'Haze_07537' => 'cav', 'Haze_07539' => 'cav', 'Haze_12461' => 'cav', 'Haze_16115' => 'cav', 'Haze_16808' => 'cav', 'Haze_18531' => 'cav', 'Hma1.2p1_0046F.1_g026700' => 'hma', 'Hma1.2p1_0046F.1_g026710' => 'hma', 'Hma1.2p1_0168F.1_g074340' => 'hma', 'Hma1.2p1_0266F.1_g107030' => 'hma', 'Hma1.2p1_0266F.1_g107060' => 'hma', 'Hma1.2p1_0275F.1_g110510' => 'hma', 'Hma1.2p1_0592F.1_g185490' => 'hma', 'Hma1.2p1_0592F.1_g185500' => 'hma', 'Hma1.2p1_0592F.1_g185510' => 'hma', 'Hma1.2p1_0592F.1_g185520' => 'hma', 'Hma1.2p1_0592F.1_g185530' => 'hma', 'Hma1.2p1_0818F.1_g223450' => 'hma', 'HPP92_009708' => 'vpl', 'HPP92_009793' => 'vpl', 'HPP92_009796' => 'vpl', 'HPP92_009797' => 'vpl', 'HPP92_014940' => 'vpl', 'HPP92_014988' => 'vpl', 'Hund02463' => 'sun', 'Hund02760' => 'sun', 'Hund05071' => 'sun', 'Hund10108' => 'sun', 'Hund11204' => 'sun', 'Hund14016' => 'sun', 'Hund16464' => 'sun', 'Lalb_Chr09g0333391' => 'lal', 'Lalb_Chr11g0070461' => 'lal', 'Lalb_Chr12g0201671' => 'lal', 'Lalb_Chr13g0297161' => 'lal', 'Lj1g0002823' => 'lja', 'Lj3C1074T6' => 'lonja', 'Lj4A212T28' => 'lonja', 'Lj4g0005516' => 'lja', 'Lj4g0013705' => 'lja', 'Lj4g0027865' => 'lja', 'Lj5C92G16' => 'lonja', 'Lj5C92T12' => 'lonja', 'Lj7C596T3' => 'lonja', 'Lj9A446G59' => 'lonja', 'Lj9A482G21' => 'lonja', 'Lsat_1_v5_gn_1_28261' => 'lsa', 'Lsat_1_v5_gn_1_28281' => 'lsa', 'Lsat_1_v5_gn_1_32721' => 'lsa', 'Lsat_1_v5_gn_4_151760' => 'lsa', 'Lsat_1_v5_gn_4_2120' => 'lsa', 'Lsat_1_v5_gn_4_75761' => 'lsa', 'Lsat_1_v5_gn_5_10920' => 'lsa', 'Manes.02G099900' => 'mes', 'Manes.11G096200' => 'mes', 'Manes.12G007200' => 'mes', 'Manes.14G048300' => 'mes', 'Manes.17G114700' => 'mes', 'Mapoly0002s0070' => 'mpo', 'Mapoly0029s0099' => 'mpo', 'MBI07_g24742_MAGBIO' => 'mbi', 'MBI10_g27988_MAGBIO' => 'mbi', 'MBI11_g13057_MAGBIO' => 'mbi', 'MD02G1137200' => 'mdo', 'MD06G1137200' => 'mdo', 'MD07G1122300' => 'mdo', 'MD09G1078200' => 'mdo', 'MD13G1123700' => 'mdo', 'MD14G1151900' => 'mdo', 'MD17G1030900' => 'mdo', 'MD17G1068200' => 'mdo', 'MD17G1068600' => 'mdo', 'Medtr3g077540' => 'mtr', 'Medtr4g105530' => 'mtr', 'Medtr8g076580' => 'mtr', 'Medtr8g076590' => 'mtr', 'Medtr8g096410' => 'mtr', 'MELO3C016411.2' => 'cme', 'MELO3C017780.2' => 'cme', 'MELO3C022560.2' => 'cme', 'MELO3C026187.2' => 'cme', 'MELO3C026286.2' => 'cme', 'MELO3C032854.2' => 'cme', 'Migut.H02495' => 'egut', 'Migut.I00561' => 'egut', 'Migut.K01015' => 'egut', 'Migut.K01016' => 'egut', 'Migut.L00743' => 'egut', 'Migut.L00744' => 'egut', 'Migut.L00746' => 'egut', 'Migut.L00798' => 'egut', 'Migut.L00799' => 'egut', 'Migut.N02096' => 'egut', 'MSTRG.11259' => 'ama', 'MSTRG.23142' => 'ama', 'MSTRG.2499' => 'ama', 'Nitab4.5_0000003g0730' => 'nta', 'Nitab4.5_0000137g0020' => 'nta', 'Nitab4.5_0000721g0210' => 'nta', 'Nitab4.5_0000723g0050' => 'nta', 'Nitab4.5_0000913g0070' => 'nta', 'Nitab4.5_0001332g0040' => 'nta', 'Nitab4.5_0001771g0050' => 'nta', 'Nitab4.5_0001918g0050' => 'nta', 'Nitab4.5_0002686g0030' => 'nta', 'Nitab4.5_0003156g0020' => 'nta', 'Nitab4.5_0003383g0040' => 'nta', 'Nitab4.5_0003918g0010' => 'nta', 'Nitab4.5_0006760g0010' => 'nta', 'Nn1g05981' => 'nnu', 'Nn1g06288' => 'nnu', 'Nn3g16371' => 'nnu', 'Nn3g16786' => 'nnu', 'Nn4g22232' => 'nnu', 'Oeu005144.1' => 'oeu', 'Oeu005145.1' => 'oeu', 'Oeu011348.1' => 'oeu', 'Oeu016415.1' => 'oeu', 'Oeu023501.1' => 'oeu', 'Oeu044473.1' => 'oeu', 'Oeu048892.2' => 'oeu', 'Os01g0549200' => 'osa', 'Os02g0469300' => 'osa', 'Os04g0311100' => 'osa', 'Os06g0474900' => 'osa', 'Os10g0181700' => 'osa', 'Os11g0454800' => 'osa', 'Peaxi162Scf00037g00714' => 'pax', 'Peaxi162Scf00084g01217' => 'pax', 'Peaxi162Scf00257g00217' => 'pax', 'Peaxi162Scf00516g00215' => 'pax', 'Peaxi162Scf00689g00123' => 'pax', 'PGR044G2719' => 'pgr', 'PGR083G1360' => 'pgr', 'PGR102G2849' => 'pgr', 'PGR119G2534' => 'pgr', 'PGSC0003DMG400003538' => 'stu', 'PGSC0003DMG400028138' => 'stu', 'PGSC0003DMG400031732' => 'stu', 'PGSC0003DMG400038165' => 'stu', 'Phvul.002G284600' => 'pvu', 'Phvul.003G258200' => 'pvu', 'Phvul.009G176500' => 'pvu', 'Potri.003G167201' => 'ptr', 'Potri.005G118400' => 'ptr', 'Potri.012G089000' => 'ptr', 'Potri.012G102800' => 'ptr', 'Potri.015G079400' => 'ptr', 'Potri.015G100900' => 'ptr', 'Pp3c14_9810' => 'ppa', 'Pp3c15_10450' => 'ppa', 'Pp3c20_19150' => 'ppa', 'Pp3c23_12740' => 'ppa', 'Pp3c23_6310' => 'ppa', 'Pp3c24_3720' => 'ppa', 'Pp3c27_2580' => 'ppa', 'Pp3c9_8990' => 'ppa', 'PRCOL_00002854' => 'pco', 'Prupe.1G221200' => 'ppe', 'Prupe.3G289000' => 'ppe', 'Prupe.5G147000' => 'ppe', 'Prupe.6G157300' => 'ppe', 'Prupe.7G163400' => 'ppe', 'Psat0s2177g0040' => 'psa', 'Psat3g174760' => 'psa', 'Psat3g192160' => 'psa', 'Psat4g058520' => 'psa', 'Psat4g096840' => 'psa', 'Psat7g037320' => 'psa', 'PSO017G1274' => 'pso', 'PSO017G5166' => 'pso', 'PSO063G4558' => 'pso', 'PSO170G4458' => 'pso', 'PSO170G5005' => 'pso', 'PSO210G6156' => 'pso', 'PSO210G6635' => 'pso', 'PSO210G7397' => 'pso', 'PSO210G7700' => 'pso', 'PSO455G0035' => 'pso', 'PSO455G0180' => 'pso', 'PSO478G4515' => 'pso', 'PSO832G1305' => 'pso', 'PSO832G3489' => 'pso', 'QL02p075247' => 'qlo', 'QL03p051148' => 'qlo', 'QL05p010313' => 'qlo', 'QL06p034627' => 'qlo', 'QL10p001889' => 'qlo', 'QL10p010846' => 'qlo', 'RcHm_v2.0_Chr1g0350621' => 'rch', 'RcHm_v2.0_Chr1g0350641' => 'rch', 'RcHm_v2.0_Chr2g0092891' => 'rch', 'RcHm_v2.0_Chr2g0100251' => 'rch', 'RcHm_v2.0_Chr2g0158661' => 'rch', 'RcHm_v2.0_Chr2g0172741' => 'rch', 'RcHm_v2.0_Chr4g0429571' => 'rch', 'RcHm_v2.0_Chr5g0042471' => 'rch', 'RcHm_v2.0_Chr7g0189451' => 'rch', 'Rhsim08G0052000' => 'rsi', 'Rhsim08G0174400' => 'rsi', 'Rhsim08G0193200' => 'rsi', 'Rhsim10G0214800' => 'rsi', 'Rhsim10G0214900' => 'rsi', 'Rhsim10G0215000' => 'rsi', 'Rhsim12G0022900' => 'rsi', 'Rhsim12G0177500' => 'rsi', 'Rhsim12G0177700' => 'rsi', 'Sabra03G0122600' => 'sbr', 'Sabra05G0097400' => 'sbr', 'Sabra12G0064100' => 'sbr', 'Sabra15G0121300' => 'sbr', 'SalBow2G0642' => 'sbo', 'SalBow5G2667' => 'sbo', 'SalBow5G4873' => 'sbo', 'SalBow8G2395' => 'sbo', 'Sc03g0003290' => 'sci', 'Sc10g0010130' => 'sci', 'Sc22g0003650' => 'sci', 'Sed0001603' => 'sed', 'Sed0004259' => 'sed', 'Sed0006789' => 'sed', 'Sed0011838' => 'sed', 'Sed0012964' => 'sed', 'Sed0016383' => 'sed', 'Sed0019010' => 'sed', 'Sed0020188' => 'sed', 'SEGI_04702' => 'sgi', 'SEGI_17231' => 'sgi', 'SEGI_18877' => 'sgi', 'SEGI_25196' => 'sgi', 'SEGI_25515' => 'sgi', 'SEGI_28445' => 'sgi', 'SEGI_37452' => 'sgi', 'SGA_v2.0_scaffold188G40336' => 'sas', 'SGA_v2.0_scaffold228G43247' => 'sas', 'SGA_v2.0_scaffold280G46853' => 'sas', 'SGA_v2.0_scaffold34G13808' => 'sas', 'SGA_v2.0_scaffold40G15576' => 'sas', 'SGA_v2.0_scaffold611G53188' => 'sas', 'SGA_v2.0_scaffold78G25461' => 'sas', 'SGA_v2.0_scaffold90G27888' => 'sas', 'SHI08601' => 'shi', 'SHI08606' => 'shi', 'SHI17117' => 'shi', 'SHI17119' => 'shi', 'SMO118G0201' => 'smo', 'SMO169G0247' => 'smo', 'SMO176G0006' => 'smo', 'SMO176G0015' => 'smo', 'SMO202G0006' => 'smo', 'SMO240G0050' => 'smo', 'SMO286G0009' => 'smo', 'SMO338G0033' => 'smo', 'SMO356G0533' => 'smo', 'SMO364G0382' => 'smo', 'SMO367G0166' => 'smo', 'SMO367G1098' => 'smo', 'Solyc01g009920.3' => 'sly', 'Solyc01g099300.3' => 'sly', 'Solyc02g084700.3' => 'sly', 'Solyc03g097520.3' => 'sly', 'Solyc06g071580.3' => 'sly', 'Solyc10g081760.3' => 'sly', 'Sopen01g005480' => 'spe', 'Sopen01g042850' => 'spe', 'Sopen02g029370' => 'spe', 'Sopen03g028280' => 'spe', 'Sopen06g027870' => 'spe', 'Sopen10g032270' => 'spe', 'Sp5g18180' => 'spa', 'Sp6g12880' => 'spa', 'Sp6g30850' => 'spa', 'Sp7g22960' => 'spa', 'Sp7g34010' => 'spa', 'SpUn1326_0010' => 'spa', 'TAR371G0242' => 'tar', 'TAR622G0638' => 'tar', 'TAR628G1548' => 'tar', 'TAR629G1079' => 'tar', 'TAR629G3413' => 'tar', 'THA.LOC104804249' => 'tha', 'THA.LOC104808315' => 'tha', 'THA.LOC104809238' => 'tha', 'THA.LOC104825484' => 'tha', 'Thecc.01G025500' => 'tca', 'Thecc.03G015800' => 'tca', 'Thecc.03G018000' => 'tca', 'Thecc.03G134800' => 'tca', 'Thecc.04G014700' => 'tca', 'Thhalv10006991m.g' => 'esa', 'Thhalv10012707m.g' => 'esa', 'Thhalv10015739m.g' => 'esa', 'Thhalv10024553m.g' => 'esa', 'Thhalv10024673m.g' => 'esa', 'Thhalv10029187m.g' => 'esa', 'TPR.G12971' => 'tpr', 'TPR.G29396' => 'tpr', 'TPR.G33376' => 'tpr', 'TPR.G35508' => 'tpr', 'TPR.G35516' => 'tpr', 'TPR.G37317' => 'tpr', 'TPR.G37389' => 'tpr', 'TPR.G37523' => 'tpr', 'TPR.G559' => 'tpr', 'TWI14G0070' => 'twi', 'TWI14G0729' => 'twi', 'TWI18G0596' => 'twi', 'TWI39G0780' => 'twi', 'TWI39G0850' => 'twi', 'TWI73G1052' => 'twi', 'unitig_52.g17485' => 'ugi', 'unitig_61.g26355' => 'ugi', 'vmacro01040' => 'vma', 'vmacro16731' => 'vma', 'vmacro18270' => 'vma', 'vmacro19142' => 'vma', 'vmacro19407' => 'vma', 'vmacro19408' => 'vma', 'vmacro21899' => 'vma', 'vmacro21900' => 'vma', 'vmacro21901' => 'vma', 'VMungo0251G0490' => 'vmu', 'VMungo0251G1748' => 'vmu', 'VMungo1309G0421' => 'vmu', 'Zm00001eb086500' => 'zma', 'Zm00001eb150680' => 'zma', 'Zm00001eb162330' => 'zma', 'Zm00001eb203130' => 'zma', 'Zm00001eb369480' => 'zma', 'Zm00001eb382340' => 'zma', 'Zm00001eb416360' => 'zma' ) $gf_id = 'HOM05D000902' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000902' ) $data_identifier = 'HOM05D000902' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 13, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 10, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 6, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 9, 'hma' => (int) 12, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 4, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 6, 'ppa' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 6, 'rch' => (int) 9, 'rsi' => (int) 9, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 12, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 3, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416360' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000902', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '663', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02470' => 'bna', 'A01p16260' => 'bna', 'A02p01680' => 'bna', 'A03p16600' => 'bna', 'A03p55660' => 'bna', 'A03p64160' => 'bna', 'A03p64170' => 'bna', 'A08p31900' => 'bna', 'A09p59530' => 'bna', 'A10p08230' => 'bna', 'A10p25090' => 'bna', 'Aa31LG3G7100' => 'aar', 'Aa31LG3G7110' => 'aar', 'Aa31LG6G13160' => 'aar', 'Aa31LG7G10770' => 'aar', 'Aa31LG7G3830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2723' => 'aag', 'Actinidia08045' => 'ach', 'Actinidia08888' => 'ach', 'Actinidia18333' => 'ach', 'Actinidia19334' => 'ach', 'Actinidia25552' => 'ach', 'Actinidia26089' => 'ach', 'Actinidia30615' => 'ach', 'Actinidia30616' => 'ach', 'Actinidia33083' => 'ach', 'Actinidia35762' => 'ach', 'Ah.02g110620' => 'amhyb', 'Ah.11g046390' => 'amhyb', 'AL1G31670' => 'aly', 'AL6G23730' => 'aly', 'AL7G14740' => 'aly', 'AL7G14750' => 'aly', 'AL7G14760' => 'aly', 'AL7G28220' => 'aly', 'AL8G24940' => 'aly', 'Aqoxy3G01665' => 'aox', 'Aqoxy3G02853' => 'aox', 'Aqoxy5G01513' => 'aox', 'Aqoxy5G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8SKA4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ75LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKDA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0LJZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7REX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZP4YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWX7I5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2QKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS0L9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPCD8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q161UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC7XCF' => 'arhy', 'AT1G19100' => 'ath', 'AT4G24970' => 'ath', 'AT4G36270' => 'ath', 'AT4G36280' => 'ath', 'AT4G36290' => 'ath', 'AT5G13130' => 'ath', 'AT5G50780' => 'ath', 'ATR0582G266' => 'atr', 'ATR0661G195' => 'atr', 'ATR1152G031' => 'atr', 'Atru.chr11.2382' => 'acertr', 'Atru.chr12.2337' => 'acertr', 'Atru.chr3.744' => 'acertr', 'Atru.chr6.1870' => 'acertr', 'Atru.chr9.2515' => 'acertr', 'AUR62004120' => 'cqu', 'AUR62005667' => 'cqu', 'AUR62007634' => 'cqu', 'AUR62008186' => 'cqu', 'AUR62008187' => 'cqu', 'AUR62008188' => 'cqu', 'AUR62027954' => 'cqu', 'AUR62028766' => 'cqu', 'AUR62028767' => 'cqu', 'AUR62028768' => 'cqu', 'AUR62028886' => 'cqu', 'AUR62029563' => 'cqu', 'AUR62038832' => 'cqu', 'BcaB01g04149' => 'bca', 'BcaB03g12940' => 'bca', 'BcaB03g13090' => 'bca', 'BcaB03g14466' => 'bca', 'BcaB05g24035' => 'bca', 'BcaC01g06050' => 'bca', 'BcaC04g19148' => 'bca', 'BcaC04g20761' => 'bca', 'BcaC06g32845' => 'bca', 'BcaC07g41274' => 'bca', 'BcaC09g50827' => 'bca', 'BcaNung00741' => 'bca', 'BcaNung00742' => 'bca', 'BcaNung01859' => 'bca', 'BcaNung03985' => 'bca', 'BcaNung03989' => 'bca', 'BcaNung05661' => 'bca', 'BolC1t00257H' => 'bol', 'BolC1t01956H' => 'bol', 'BolC2t06534H' => 'bol', 'BolC3t14334H' => 'bol', 'BolC5t30451H' => 'bol', 'BolC7t45880H' => 'bol', 'BolC7t46586H' => 'bol', 'BolC8t49301H' => 'bol', 'BolC8t51837H' => 'bol', 'BolC9t56822H' => 'bol', 'BolC9t59235H' => 'bol', 'BraA01t00234Z' => 'bra', 'BraA01t01563Z' => 'bra', 'BraA02t05147Z' => 'bra', 'BraA03t10947Z' => 'bra', 'BraA03t14633Z' => 'bra', 'BraA08t35112Z' => 'bra', 'BraA09t41330Z' => 'bra', 'BraA10t44570Z' => 'bra', 'C01p02670' => 'bna', 'C01p20260' => 'bna', 'C02p05890' => 'bna', 'C03p19530' => 'bna', 'C05p17470' => 'bna', 'C07p53900' => 'bna', 'C07p61630' => 'bna', 'C08p16800' => 'bna', 'C08p42810' => 'bna', 'C09p39480' => 'bna', 'C09p63980' => 'bna', 'CAN.G1001.7' => 'can', 'CAN.G1034.55' => 'can', 'CAN.G143.7' => 'can', 'CAN.G3340.1' => 'can', 'CAN.G358.19' => 'can', 'CAN.G373.2' => 'can', 'CAN.G674.16' => 'can', 'CAN.G674.17' => 'can', 'CAN.G674.18' => 'can', 'CAN.G732.2' => 'can', 'CAN.G732.3' => 'can', 'CAN.G993.39' => 'can', 'CANSAT01G2052' => 'cansat', 'CANSAT80G0070' => 'cansat', 'CANSAT80G0483' => 'cansat', 'CANSAT80G0625' => 'cansat', 'CARHR019690' => 'chi', 'CARHR080280' => 'chi', 'CARHR152750' => 'chi', 'CARHR152760' => 'chi', 'CARHR152770' => 'chi', 'CARHR200340' => 'chi', 'CARHR232370' => 'chi', 'CARHR244670' => 'chi', 'CARHR244680' => 'chi', 'CARHR257520' => 'chi', 'Carub.0001s1872' => 'cru', 'Carub.0006s1130' => 'cru', 'Carub.0007s0396' => 'cru', 'Carub.0007s0397' => 'cru', 'Carub.0007s1608' => 'cru', 'Carub.0008s1068' => 'cru', 'Carub.0008s1077' => 'cru', 'Ca_16158_v3' => 'car', 'Ca_17571_v3' => 'car', 'Ca_21936_v3' => 'car', 'Ca_22350_v3' => 'car', 'CBR_g22445' => 'cbr', 'CBR_g26290' => 'cbr', 'Cc04_g09610' => 'ccan', 'Cc04_g12280' => 'ccan', 'Cc07_g10230' => 'ccan', 'CDE02G0093' => 'cde', 'CDE02G0701' => 'cde', 'CDE04G1050' => 'cde', 'CDE05G1833' => 'cde', 'CDE05G3058' => 'cde', 'CDE05G3380' => 'cde', 'CDE06G0536' => 'cde', 'Cfa006923' => 'cfa', 'Cfa009402' => 'cfa', 'Cfa018751' => 'cfa', 'Cfa019164' => 'cfa', 'Cfa022935' => 'cfa', 'Ciclev10019081m.g' => 'ccl', 'Ciclev10025076m.g' => 'ccl', 'Ciclev10030712m.g' => 'ccl', 'Ciclev10033760m.g' => 'ccl', 'CiPaw.05G105600' => 'cil', 'CiPaw.08G136700' => 'cil', 'CiPaw.11G003900' => 'cil', 'CiPaw.11G023700' => 'cil', 'CiPaw.12G003700' => 'cil', 'ClCG06G017100' => 'cla', 'ClCG06G018110' => 'cla', 'ClCG07G008800' => 'cla', 'ClCG07G015330' => 'cla', 'COL.COLO4_13698' => 'col', 'COL.COLO4_16659' => 'col', 'COL.COLO4_21986' => 'col', 'COL.COLO4_24049' => 'col', 'COL.COLO4_29061' => 'col', 'COL.COLO4_29075' => 'col', 'COL.COLO4_30094' => 'col', 'Cpa.g.c33689' => 'cpa', 'Cpa.g.sc108.39' => 'cpa', 'Cpa.g.sc108.41' => 'cpa', 'Cpa.g.sc1163.1' => 'cpa', 'Cpa.g.sc4.155' => 'cpa', 'Cpa.g.sc6.194' => 'cpa', 'CsaV3_1G000340' => 'csa', 'CsaV3_1G001400' => 'csa', 'CsaV3_4G002220' => 'csa', 'CsaV3_4G005370' => 'csa', 'CSS0007487' => 'camsi', 'CSS0008066' => 'camsi', 'CSS0009120' => 'camsi', 'CSS0015512' => 'camsi', 'CSS0022409' => 'camsi', 'CSS0025358' => 'camsi', 'CSS0044547' => 'camsi', 'DCAR_013057' => 'dca', 'DCAR_015058' => 'dca', 'DCAR_016027' => 'dca', 'DCAR_017327' => 'dca', 'DCAR_020743' => 'dca', 'DCAR_026157' => 'dca', 'DCAR_032339' => 'dca', 'DCAR_032340' => 'dca', 'Dinv11200' => 'din', 'Dinv11201' => 'din', 'Dinv20631' => 'din', 'Dinv23182' => 'din', 'Dinv33466' => 'din', 'Dinv33583' => 'din', 'Dinv38565' => 'din', 'Duzib068G0200' => 'dzi', 'Duzib147G0132' => 'dzi', 'Duzib147G0635' => 'dzi', 'Duzib205G1670' => 'dzi', 'Duzib251G0606' => 'dzi', 'ECA232G3336' => 'eca', 'ECA232G3763' => 'eca', 'ECA232G4845' => 'eca', 'ECA234G1607' => 'eca', 'ECA246G0932' => 'eca', 'ECA247G0781' => 'eca', 'ECA247G1932' => 'eca', 'ECA247G2079' => 'eca', 'ECA247G3338' => 'eca', 'ECA247G4115' => 'eca', 'EL10Ac3g06552' => 'bvu', 'EL10Ac5g10721' => 'bvu', 'EL10Ac5g10722' => 'bvu', 'EL10Ac5g10723' => 'bvu', 'EL10Ac5g11361' => 'bvu', 'EL10Ac6g13553' => 'bvu', 'EL10As8g23872' => 'bvu', 'Eucgr.B00250' => 'egr', 'Eucgr.B00251' => 'egr', 'Eucgr.B03533' => 'egr', 'Eucgr.I02381' => 'egr', 'Eucgr.K02700' => 'egr', 'FAN02G0174' => 'fan', 'FAN02G3146' => 'fan', 'FAN04G1672' => 'fan', 'FAN04G2273' => 'fan', 'FAN05G2791' => 'fan', 'FAN05G4035' => 'fan', 'FAN07G0834' => 'fan', 'FAN08G1198' => 'fan', 'FAN09G4182' => 'fan', 'FAN12G0496' => 'fan', 'FAN13G1027' => 'fan', 'FAN13G2951' => 'fan', 'FAN14G0705' => 'fan', 'FAN14G0720' => 'fan', 'FAN17G0201' => 'fan', 'FAN17G2665' => 'fan', 'FAN18G1456' => 'fan', 'FAN18G1525' => 'fan', 'FAN18G3500' => 'fan', 'FAN28G2670' => 'fan', 'FvH4_1g12391' => 'fve', 'FvH4_4g23220' => 'fve', 'FvH4_5g08810' => 'fve', 'FvH4_5g28960' => 'fve', 'FvH4_6g42820' => 'fve', 'FvH4_6g51110' => 'fve', 'Glyma.02G051802' => 'gma', 'Glyma.04G185300' => 'gma', 'Glyma.05G202900' => 'gma', 'Glyma.08G010300' => 'gma', 'Glyma.16G131900' => 'gma', 'Glyma.17G087900' => 'gma', 'Gohir.A07G048600' => 'ghi', 'Gohir.A11G179000' => 'ghi', 'Gohir.A12G140900' => 'ghi', 'Gohir.A12G140950' => 'ghi', 'Gohir.A12G191700' => 'ghi', 'Gohir.A13G086300' => 'ghi', 'Gohir.D07G052900' => 'ghi', 'Gohir.D11G186600' => 'ghi', 'Gohir.D12G145575' => 'ghi', 'Gohir.D12G145650' => 'ghi', 'Gohir.D12G145725' => 'ghi', 'Gohir.D12G194050' => 'ghi', 'Gohir.D13G091800' => 'ghi', 'Gorai.001G055900' => 'gra', 'Gorai.007G198400' => 'gra', 'Gorai.008G157000' => 'gra', 'Gorai.008G157100' => 'gra', 'Gorai.008G208700' => 'gra', 'Gorai.010G138700' => 'gra', 'GSVIVG01000977001' => 'vvi', 'GSVIVG01007708001' => 'vvi', 'GSVIVG01008587001' => 'vvi', 'GSVIVG01018849001' => 'vvi', 'GSVIVG01032432001' => 'vvi', 'HanXRQChr02g0034131' => 'han', 'HanXRQChr02g0035981' => 'han', 'HanXRQChr02g0035991' => 'han', 'HanXRQChr05g0155611' => 'han', 'HanXRQChr05g0155621' => 'han', 'HanXRQChr08g0236501' => 'han', 'HanXRQChr09g0261321' => 'han', 'HanXRQChr09g0272081' => 'han', 'HanXRQChr10g0310741' => 'han', 'HanXRQChr11g0325591' => 'han', 'HanXRQChr12g0385691' => 'han', 'HanXRQChr13g0387801' => 'han', 'HanXRQChr15g0463011' => 'han', 'Haze_03826' => 'cav', 'Haze_03827' => 'cav', 'Haze_07183' => 'cav', 'Haze_07537' => 'cav', 'Haze_07539' => 'cav', 'Haze_12461' => 'cav', 'Haze_16115' => 'cav', 'Haze_16808' => 'cav', 'Haze_18531' => 'cav', 'Hma1.2p1_0046F.1_g026700' => 'hma', 'Hma1.2p1_0046F.1_g026710' => 'hma', 'Hma1.2p1_0168F.1_g074340' => 'hma', 'Hma1.2p1_0266F.1_g107030' => 'hma', 'Hma1.2p1_0266F.1_g107060' => 'hma', 'Hma1.2p1_0275F.1_g110510' => 'hma', 'Hma1.2p1_0592F.1_g185490' => 'hma', 'Hma1.2p1_0592F.1_g185500' => 'hma', 'Hma1.2p1_0592F.1_g185510' => 'hma', 'Hma1.2p1_0592F.1_g185520' => 'hma', 'Hma1.2p1_0592F.1_g185530' => 'hma', 'Hma1.2p1_0818F.1_g223450' => 'hma', 'HPP92_009708' => 'vpl', 'HPP92_009793' => 'vpl', 'HPP92_009796' => 'vpl', 'HPP92_009797' => 'vpl', 'HPP92_014940' => 'vpl', 'HPP92_014988' => 'vpl', 'Hund02463' => 'sun', 'Hund02760' => 'sun', 'Hund05071' => 'sun', 'Hund10108' => 'sun', 'Hund11204' => 'sun', 'Hund14016' => 'sun', 'Hund16464' => 'sun', 'Lalb_Chr09g0333391' => 'lal', 'Lalb_Chr11g0070461' => 'lal', 'Lalb_Chr12g0201671' => 'lal', 'Lalb_Chr13g0297161' => 'lal', 'Lj1g0002823' => 'lja', 'Lj3C1074T6' => 'lonja', 'Lj4A212T28' => 'lonja', 'Lj4g0005516' => 'lja', 'Lj4g0013705' => 'lja', 'Lj4g0027865' => 'lja', 'Lj5C92G16' => 'lonja', 'Lj5C92T12' => 'lonja', 'Lj7C596T3' => 'lonja', 'Lj9A446G59' => 'lonja', 'Lj9A482G21' => 'lonja', 'Lsat_1_v5_gn_1_28261' => 'lsa', 'Lsat_1_v5_gn_1_28281' => 'lsa', 'Lsat_1_v5_gn_1_32721' => 'lsa', 'Lsat_1_v5_gn_4_151760' => 'lsa', 'Lsat_1_v5_gn_4_2120' => 'lsa', 'Lsat_1_v5_gn_4_75761' => 'lsa', 'Lsat_1_v5_gn_5_10920' => 'lsa', 'Manes.02G099900' => 'mes', 'Manes.11G096200' => 'mes', 'Manes.12G007200' => 'mes', 'Manes.14G048300' => 'mes', 'Manes.17G114700' => 'mes', 'Mapoly0002s0070' => 'mpo', 'Mapoly0029s0099' => 'mpo', 'MBI07_g24742_MAGBIO' => 'mbi', 'MBI10_g27988_MAGBIO' => 'mbi', 'MBI11_g13057_MAGBIO' => 'mbi', 'MD02G1137200' => 'mdo', 'MD06G1137200' => 'mdo', 'MD07G1122300' => 'mdo', 'MD09G1078200' => 'mdo', 'MD13G1123700' => 'mdo', 'MD14G1151900' => 'mdo', 'MD17G1030900' => 'mdo', 'MD17G1068200' => 'mdo', 'MD17G1068600' => 'mdo', 'Medtr3g077540' => 'mtr', 'Medtr4g105530' => 'mtr', 'Medtr8g076580' => 'mtr', 'Medtr8g076590' => 'mtr', 'Medtr8g096410' => 'mtr', 'MELO3C016411.2' => 'cme', 'MELO3C017780.2' => 'cme', 'MELO3C022560.2' => 'cme', 'MELO3C026187.2' => 'cme', 'MELO3C026286.2' => 'cme', 'MELO3C032854.2' => 'cme', 'Migut.H02495' => 'egut', 'Migut.I00561' => 'egut', 'Migut.K01015' => 'egut', 'Migut.K01016' => 'egut', 'Migut.L00743' => 'egut', 'Migut.L00744' => 'egut', 'Migut.L00746' => 'egut', 'Migut.L00798' => 'egut', 'Migut.L00799' => 'egut', 'Migut.N02096' => 'egut', 'MSTRG.11259' => 'ama', 'MSTRG.23142' => 'ama', 'MSTRG.2499' => 'ama', 'Nitab4.5_0000003g0730' => 'nta', 'Nitab4.5_0000137g0020' => 'nta', 'Nitab4.5_0000721g0210' => 'nta', 'Nitab4.5_0000723g0050' => 'nta', 'Nitab4.5_0000913g0070' => 'nta', 'Nitab4.5_0001332g0040' => 'nta', 'Nitab4.5_0001771g0050' => 'nta', 'Nitab4.5_0001918g0050' => 'nta', 'Nitab4.5_0002686g0030' => 'nta', 'Nitab4.5_0003156g0020' => 'nta', 'Nitab4.5_0003383g0040' => 'nta', 'Nitab4.5_0003918g0010' => 'nta', 'Nitab4.5_0006760g0010' => 'nta', 'Nn1g05981' => 'nnu', 'Nn1g06288' => 'nnu', 'Nn3g16371' => 'nnu', 'Nn3g16786' => 'nnu', 'Nn4g22232' => 'nnu', 'Oeu005144.1' => 'oeu', 'Oeu005145.1' => 'oeu', 'Oeu011348.1' => 'oeu', 'Oeu016415.1' => 'oeu', 'Oeu023501.1' => 'oeu', 'Oeu044473.1' => 'oeu', 'Oeu048892.2' => 'oeu', 'Os01g0549200' => 'osa', 'Os02g0469300' => 'osa', 'Os04g0311100' => 'osa', 'Os06g0474900' => 'osa', 'Os10g0181700' => 'osa', 'Os11g0454800' => 'osa', 'Peaxi162Scf00037g00714' => 'pax', 'Peaxi162Scf00084g01217' => 'pax', 'Peaxi162Scf00257g00217' => 'pax', 'Peaxi162Scf00516g00215' => 'pax', 'Peaxi162Scf00689g00123' => 'pax', 'PGR044G2719' => 'pgr', 'PGR083G1360' => 'pgr', 'PGR102G2849' => 'pgr', 'PGR119G2534' => 'pgr', 'PGSC0003DMG400003538' => 'stu', 'PGSC0003DMG400028138' => 'stu', 'PGSC0003DMG400031732' => 'stu', 'PGSC0003DMG400038165' => 'stu', 'Phvul.002G284600' => 'pvu', 'Phvul.003G258200' => 'pvu', 'Phvul.009G176500' => 'pvu', 'Potri.003G167201' => 'ptr', 'Potri.005G118400' => 'ptr', 'Potri.012G089000' => 'ptr', 'Potri.012G102800' => 'ptr', 'Potri.015G079400' => 'ptr', 'Potri.015G100900' => 'ptr', 'Pp3c14_9810' => 'ppa', 'Pp3c15_10450' => 'ppa', 'Pp3c20_19150' => 'ppa', 'Pp3c23_12740' => 'ppa', 'Pp3c23_6310' => 'ppa', 'Pp3c24_3720' => 'ppa', 'Pp3c27_2580' => 'ppa', 'Pp3c9_8990' => 'ppa', 'PRCOL_00002854' => 'pco', 'Prupe.1G221200' => 'ppe', 'Prupe.3G289000' => 'ppe', 'Prupe.5G147000' => 'ppe', 'Prupe.6G157300' => 'ppe', 'Prupe.7G163400' => 'ppe', 'Psat0s2177g0040' => 'psa', 'Psat3g174760' => 'psa', 'Psat3g192160' => 'psa', 'Psat4g058520' => 'psa', 'Psat4g096840' => 'psa', 'Psat7g037320' => 'psa', 'PSO017G1274' => 'pso', 'PSO017G5166' => 'pso', 'PSO063G4558' => 'pso', 'PSO170G4458' => 'pso', 'PSO170G5005' => 'pso', 'PSO210G6156' => 'pso', 'PSO210G6635' => 'pso', 'PSO210G7397' => 'pso', 'PSO210G7700' => 'pso', 'PSO455G0035' => 'pso', 'PSO455G0180' => 'pso', 'PSO478G4515' => 'pso', 'PSO832G1305' => 'pso', 'PSO832G3489' => 'pso', 'QL02p075247' => 'qlo', 'QL03p051148' => 'qlo', 'QL05p010313' => 'qlo', 'QL06p034627' => 'qlo', 'QL10p001889' => 'qlo', 'QL10p010846' => 'qlo', 'RcHm_v2.0_Chr1g0350621' => 'rch', 'RcHm_v2.0_Chr1g0350641' => 'rch', 'RcHm_v2.0_Chr2g0092891' => 'rch', 'RcHm_v2.0_Chr2g0100251' => 'rch', 'RcHm_v2.0_Chr2g0158661' => 'rch', 'RcHm_v2.0_Chr2g0172741' => 'rch', 'RcHm_v2.0_Chr4g0429571' => 'rch', 'RcHm_v2.0_Chr5g0042471' => 'rch', 'RcHm_v2.0_Chr7g0189451' => 'rch', 'Rhsim08G0052000' => 'rsi', 'Rhsim08G0174400' => 'rsi', 'Rhsim08G0193200' => 'rsi', 'Rhsim10G0214800' => 'rsi', 'Rhsim10G0214900' => 'rsi', 'Rhsim10G0215000' => 'rsi', 'Rhsim12G0022900' => 'rsi', 'Rhsim12G0177500' => 'rsi', 'Rhsim12G0177700' => 'rsi', 'Sabra03G0122600' => 'sbr', 'Sabra05G0097400' => 'sbr', 'Sabra12G0064100' => 'sbr', 'Sabra15G0121300' => 'sbr', 'SalBow2G0642' => 'sbo', 'SalBow5G2667' => 'sbo', 'SalBow5G4873' => 'sbo', 'SalBow8G2395' => 'sbo', 'Sc03g0003290' => 'sci', 'Sc10g0010130' => 'sci', 'Sc22g0003650' => 'sci', 'Sed0001603' => 'sed', 'Sed0004259' => 'sed', 'Sed0006789' => 'sed', 'Sed0011838' => 'sed', 'Sed0012964' => 'sed', 'Sed0016383' => 'sed', 'Sed0019010' => 'sed', 'Sed0020188' => 'sed', 'SEGI_04702' => 'sgi', 'SEGI_17231' => 'sgi', 'SEGI_18877' => 'sgi', 'SEGI_25196' => 'sgi', 'SEGI_25515' => 'sgi', 'SEGI_28445' => 'sgi', 'SEGI_37452' => 'sgi', 'SGA_v2.0_scaffold188G40336' => 'sas', 'SGA_v2.0_scaffold228G43247' => 'sas', 'SGA_v2.0_scaffold280G46853' => 'sas', 'SGA_v2.0_scaffold34G13808' => 'sas', 'SGA_v2.0_scaffold40G15576' => 'sas', 'SGA_v2.0_scaffold611G53188' => 'sas', 'SGA_v2.0_scaffold78G25461' => 'sas', 'SGA_v2.0_scaffold90G27888' => 'sas', 'SHI08601' => 'shi', 'SHI08606' => 'shi', 'SHI17117' => 'shi', 'SHI17119' => 'shi', 'SMO118G0201' => 'smo', 'SMO169G0247' => 'smo', 'SMO176G0006' => 'smo', 'SMO176G0015' => 'smo', 'SMO202G0006' => 'smo', 'SMO240G0050' => 'smo', 'SMO286G0009' => 'smo', 'SMO338G0033' => 'smo', 'SMO356G0533' => 'smo', 'SMO364G0382' => 'smo', 'SMO367G0166' => 'smo', 'SMO367G1098' => 'smo', 'Solyc01g009920.3' => 'sly', 'Solyc01g099300.3' => 'sly', 'Solyc02g084700.3' => 'sly', 'Solyc03g097520.3' => 'sly', 'Solyc06g071580.3' => 'sly', 'Solyc10g081760.3' => 'sly', 'Sopen01g005480' => 'spe', 'Sopen01g042850' => 'spe', 'Sopen02g029370' => 'spe', 'Sopen03g028280' => 'spe', 'Sopen06g027870' => 'spe', 'Sopen10g032270' => 'spe', 'Sp5g18180' => 'spa', 'Sp6g12880' => 'spa', 'Sp6g30850' => 'spa', 'Sp7g22960' => 'spa', 'Sp7g34010' => 'spa', 'SpUn1326_0010' => 'spa', 'TAR371G0242' => 'tar', 'TAR622G0638' => 'tar', 'TAR628G1548' => 'tar', 'TAR629G1079' => 'tar', 'TAR629G3413' => 'tar', 'THA.LOC104804249' => 'tha', 'THA.LOC104808315' => 'tha', 'THA.LOC104809238' => 'tha', 'THA.LOC104825484' => 'tha', 'Thecc.01G025500' => 'tca', 'Thecc.03G015800' => 'tca', 'Thecc.03G018000' => 'tca', 'Thecc.03G134800' => 'tca', 'Thecc.04G014700' => 'tca', 'Thhalv10006991m.g' => 'esa', 'Thhalv10012707m.g' => 'esa', 'Thhalv10015739m.g' => 'esa', 'Thhalv10024553m.g' => 'esa', 'Thhalv10024673m.g' => 'esa', 'Thhalv10029187m.g' => 'esa', 'TPR.G12971' => 'tpr', 'TPR.G29396' => 'tpr', 'TPR.G33376' => 'tpr', 'TPR.G35508' => 'tpr', 'TPR.G35516' => 'tpr', 'TPR.G37317' => 'tpr', 'TPR.G37389' => 'tpr', 'TPR.G37523' => 'tpr', 'TPR.G559' => 'tpr', 'TWI14G0070' => 'twi', 'TWI14G0729' => 'twi', 'TWI18G0596' => 'twi', 'TWI39G0780' => 'twi', 'TWI39G0850' => 'twi', 'TWI73G1052' => 'twi', 'unitig_52.g17485' => 'ugi', 'unitig_61.g26355' => 'ugi', 'vmacro01040' => 'vma', 'vmacro16731' => 'vma', 'vmacro18270' => 'vma', 'vmacro19142' => 'vma', 'vmacro19407' => 'vma', 'vmacro19408' => 'vma', 'vmacro21899' => 'vma', 'vmacro21900' => 'vma', 'vmacro21901' => 'vma', 'VMungo0251G0490' => 'vmu', 'VMungo0251G1748' => 'vmu', 'VMungo1309G0421' => 'vmu', 'Zm00001eb086500' => 'zma', 'Zm00001eb150680' => 'zma', 'Zm00001eb162330' => 'zma', 'Zm00001eb203130' => 'zma', 'Zm00001eb369480' => 'zma', 'Zm00001eb382340' => 'zma', 'Zm00001eb416360' => 'zma' ), 'gf_id' => 'HOM05D000902', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000902' ), 'data_identifier' => 'HOM05D000902', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000902', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '663', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02470' => 'bna', 'A01p16260' => 'bna', 'A02p01680' => 'bna', 'A03p16600' => 'bna', 'A03p55660' => 'bna', 'A03p64160' => 'bna', 'A03p64170' => 'bna', 'A08p31900' => 'bna', 'A09p59530' => 'bna', 'A10p08230' => 'bna', 'A10p25090' => 'bna', 'Aa31LG3G7100' => 'aar', 'Aa31LG3G7110' => 'aar', 'Aa31LG6G13160' => 'aar', 'Aa31LG7G10770' => 'aar', 'Aa31LG7G3830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2723' => 'aag', 'Actinidia08045' => 'ach', 'Actinidia08888' => 'ach', 'Actinidia18333' => 'ach', 'Actinidia19334' => 'ach', 'Actinidia25552' => 'ach', 'Actinidia26089' => 'ach', 'Actinidia30615' => 'ach', 'Actinidia30616' => 'ach', 'Actinidia33083' => 'ach', 'Actinidia35762' => 'ach', 'Ah.02g110620' => 'amhyb', 'Ah.11g046390' => 'amhyb', 'AL1G31670' => 'aly', 'AL6G23730' => 'aly', 'AL7G14740' => 'aly', 'AL7G14750' => 'aly', 'AL7G14760' => 'aly', 'AL7G28220' => 'aly', 'AL8G24940' => 'aly', 'Aqoxy3G01665' => 'aox', 'Aqoxy3G02853' => 'aox', 'Aqoxy5G01513' => 'aox', 'Aqoxy5G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8SKA4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ75LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKDA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0LJZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7REX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZP4YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWX7I5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2QKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS0L9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPCD8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q161UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC7XCF' => 'arhy', 'AT1G19100' => 'ath', 'AT4G24970' => 'ath', 'AT4G36270' => 'ath', 'AT4G36280' => 'ath', 'AT4G36290' => 'ath', 'AT5G13130' => 'ath', 'AT5G50780' => 'ath', 'ATR0582G266' => 'atr', 'ATR0661G195' => 'atr', 'ATR1152G031' => 'atr', 'Atru.chr11.2382' => 'acertr', 'Atru.chr12.2337' => 'acertr', 'Atru.chr3.744' => 'acertr', 'Atru.chr6.1870' => 'acertr', 'Atru.chr9.2515' => 'acertr', 'AUR62004120' => 'cqu', 'AUR62005667' => 'cqu', 'AUR62007634' => 'cqu', 'AUR62008186' => 'cqu', 'AUR62008187' => 'cqu', 'AUR62008188' => 'cqu', 'AUR62027954' => 'cqu', 'AUR62028766' => 'cqu', 'AUR62028767' => 'cqu', 'AUR62028768' => 'cqu', 'AUR62028886' => 'cqu', 'AUR62029563' => 'cqu', 'AUR62038832' => 'cqu', 'BcaB01g04149' => 'bca', 'BcaB03g12940' => 'bca', 'BcaB03g13090' => 'bca', 'BcaB03g14466' => 'bca', 'BcaB05g24035' => 'bca', 'BcaC01g06050' => 'bca', 'BcaC04g19148' => 'bca', 'BcaC04g20761' => 'bca', 'BcaC06g32845' => 'bca', 'BcaC07g41274' => 'bca', 'BcaC09g50827' => 'bca', 'BcaNung00741' => 'bca', 'BcaNung00742' => 'bca', 'BcaNung01859' => 'bca', 'BcaNung03985' => 'bca', 'BcaNung03989' => 'bca', 'BcaNung05661' => 'bca', 'BolC1t00257H' => 'bol', 'BolC1t01956H' => 'bol', 'BolC2t06534H' => 'bol', 'BolC3t14334H' => 'bol', 'BolC5t30451H' => 'bol', 'BolC7t45880H' => 'bol', 'BolC7t46586H' => 'bol', 'BolC8t49301H' => 'bol', 'BolC8t51837H' => 'bol', 'BolC9t56822H' => 'bol', 'BolC9t59235H' => 'bol', 'BraA01t00234Z' => 'bra', 'BraA01t01563Z' => 'bra', 'BraA02t05147Z' => 'bra', 'BraA03t10947Z' => 'bra', 'BraA03t14633Z' => 'bra', 'BraA08t35112Z' => 'bra', 'BraA09t41330Z' => 'bra', 'BraA10t44570Z' => 'bra', 'C01p02670' => 'bna', 'C01p20260' => 'bna', 'C02p05890' => 'bna', 'C03p19530' => 'bna', 'C05p17470' => 'bna', 'C07p53900' => 'bna', 'C07p61630' => 'bna', 'C08p16800' => 'bna', 'C08p42810' => 'bna', 'C09p39480' => 'bna', 'C09p63980' => 'bna', 'CAN.G1001.7' => 'can', 'CAN.G1034.55' => 'can', 'CAN.G143.7' => 'can', 'CAN.G3340.1' => 'can', 'CAN.G358.19' => 'can', 'CAN.G373.2' => 'can', 'CAN.G674.16' => 'can', 'CAN.G674.17' => 'can', 'CAN.G674.18' => 'can', 'CAN.G732.2' => 'can', 'CAN.G732.3' => 'can', 'CAN.G993.39' => 'can', 'CANSAT01G2052' => 'cansat', 'CANSAT80G0070' => 'cansat', 'CANSAT80G0483' => 'cansat', 'CANSAT80G0625' => 'cansat', 'CARHR019690' => 'chi', 'CARHR080280' => 'chi', 'CARHR152750' => 'chi', 'CARHR152760' => 'chi', 'CARHR152770' => 'chi', 'CARHR200340' => 'chi', 'CARHR232370' => 'chi', 'CARHR244670' => 'chi', 'CARHR244680' => 'chi', 'CARHR257520' => 'chi', 'Carub.0001s1872' => 'cru', 'Carub.0006s1130' => 'cru', 'Carub.0007s0396' => 'cru', 'Carub.0007s0397' => 'cru', 'Carub.0007s1608' => 'cru', 'Carub.0008s1068' => 'cru', 'Carub.0008s1077' => 'cru', 'Ca_16158_v3' => 'car', 'Ca_17571_v3' => 'car', 'Ca_21936_v3' => 'car', 'Ca_22350_v3' => 'car', 'CBR_g22445' => 'cbr', 'CBR_g26290' => 'cbr', 'Cc04_g09610' => 'ccan', 'Cc04_g12280' => 'ccan', 'Cc07_g10230' => 'ccan', 'CDE02G0093' => 'cde', 'CDE02G0701' => 'cde', 'CDE04G1050' => 'cde', 'CDE05G1833' => 'cde', 'CDE05G3058' => 'cde', 'CDE05G3380' => 'cde', 'CDE06G0536' => 'cde', 'Cfa006923' => 'cfa', 'Cfa009402' => 'cfa', 'Cfa018751' => 'cfa', 'Cfa019164' => 'cfa', 'Cfa022935' => 'cfa', 'Ciclev10019081m.g' => 'ccl', 'Ciclev10025076m.g' => 'ccl', 'Ciclev10030712m.g' => 'ccl', 'Ciclev10033760m.g' => 'ccl', 'CiPaw.05G105600' => 'cil', 'CiPaw.08G136700' => 'cil', 'CiPaw.11G003900' => 'cil', 'CiPaw.11G023700' => 'cil', 'CiPaw.12G003700' => 'cil', 'ClCG06G017100' => 'cla', 'ClCG06G018110' => 'cla', 'ClCG07G008800' => 'cla', 'ClCG07G015330' => 'cla', 'COL.COLO4_13698' => 'col', 'COL.COLO4_16659' => 'col', 'COL.COLO4_21986' => 'col', 'COL.COLO4_24049' => 'col', 'COL.COLO4_29061' => 'col', 'COL.COLO4_29075' => 'col', 'COL.COLO4_30094' => 'col', 'Cpa.g.c33689' => 'cpa', 'Cpa.g.sc108.39' => 'cpa', 'Cpa.g.sc108.41' => 'cpa', 'Cpa.g.sc1163.1' => 'cpa', 'Cpa.g.sc4.155' => 'cpa', 'Cpa.g.sc6.194' => 'cpa', 'CsaV3_1G000340' => 'csa', 'CsaV3_1G001400' => 'csa', 'CsaV3_4G002220' => 'csa', 'CsaV3_4G005370' => 'csa', 'CSS0007487' => 'camsi', 'CSS0008066' => 'camsi', 'CSS0009120' => 'camsi', 'CSS0015512' => 'camsi', 'CSS0022409' => 'camsi', 'CSS0025358' => 'camsi', 'CSS0044547' => 'camsi', 'DCAR_013057' => 'dca', 'DCAR_015058' => 'dca', 'DCAR_016027' => 'dca', 'DCAR_017327' => 'dca', 'DCAR_020743' => 'dca', 'DCAR_026157' => 'dca', 'DCAR_032339' => 'dca', 'DCAR_032340' => 'dca', 'Dinv11200' => 'din', 'Dinv11201' => 'din', 'Dinv20631' => 'din', 'Dinv23182' => 'din', 'Dinv33466' => 'din', 'Dinv33583' => 'din', 'Dinv38565' => 'din', 'Duzib068G0200' => 'dzi', 'Duzib147G0132' => 'dzi', 'Duzib147G0635' => 'dzi', 'Duzib205G1670' => 'dzi', 'Duzib251G0606' => 'dzi', 'ECA232G3336' => 'eca', 'ECA232G3763' => 'eca', 'ECA232G4845' => 'eca', 'ECA234G1607' => 'eca', 'ECA246G0932' => 'eca', 'ECA247G0781' => 'eca', 'ECA247G1932' => 'eca', 'ECA247G2079' => 'eca', 'ECA247G3338' => 'eca', 'ECA247G4115' => 'eca', 'EL10Ac3g06552' => 'bvu', 'EL10Ac5g10721' => 'bvu', 'EL10Ac5g10722' => 'bvu', 'EL10Ac5g10723' => 'bvu', 'EL10Ac5g11361' => 'bvu', 'EL10Ac6g13553' => 'bvu', 'EL10As8g23872' => 'bvu', 'Eucgr.B00250' => 'egr', 'Eucgr.B00251' => 'egr', 'Eucgr.B03533' => 'egr', 'Eucgr.I02381' => 'egr', 'Eucgr.K02700' => 'egr', 'FAN02G0174' => 'fan', 'FAN02G3146' => 'fan', 'FAN04G1672' => 'fan', 'FAN04G2273' => 'fan', 'FAN05G2791' => 'fan', 'FAN05G4035' => 'fan', 'FAN07G0834' => 'fan', 'FAN08G1198' => 'fan', 'FAN09G4182' => 'fan', 'FAN12G0496' => 'fan', 'FAN13G1027' => 'fan', 'FAN13G2951' => 'fan', 'FAN14G0705' => 'fan', 'FAN14G0720' => 'fan', 'FAN17G0201' => 'fan', 'FAN17G2665' => 'fan', 'FAN18G1456' => 'fan', 'FAN18G1525' => 'fan', 'FAN18G3500' => 'fan', 'FAN28G2670' => 'fan', 'FvH4_1g12391' => 'fve', 'FvH4_4g23220' => 'fve', 'FvH4_5g08810' => 'fve', 'FvH4_5g28960' => 'fve', 'FvH4_6g42820' => 'fve', 'FvH4_6g51110' => 'fve', 'Glyma.02G051802' => 'gma', 'Glyma.04G185300' => 'gma', 'Glyma.05G202900' => 'gma', 'Glyma.08G010300' => 'gma', 'Glyma.16G131900' => 'gma', 'Glyma.17G087900' => 'gma', 'Gohir.A07G048600' => 'ghi', 'Gohir.A11G179000' => 'ghi', 'Gohir.A12G140900' => 'ghi', 'Gohir.A12G140950' => 'ghi', 'Gohir.A12G191700' => 'ghi', 'Gohir.A13G086300' => 'ghi', 'Gohir.D07G052900' => 'ghi', 'Gohir.D11G186600' => 'ghi', 'Gohir.D12G145575' => 'ghi', 'Gohir.D12G145650' => 'ghi', 'Gohir.D12G145725' => 'ghi', 'Gohir.D12G194050' => 'ghi', 'Gohir.D13G091800' => 'ghi', 'Gorai.001G055900' => 'gra', 'Gorai.007G198400' => 'gra', 'Gorai.008G157000' => 'gra', 'Gorai.008G157100' => 'gra', 'Gorai.008G208700' => 'gra', 'Gorai.010G138700' => 'gra', 'GSVIVG01000977001' => 'vvi', 'GSVIVG01007708001' => 'vvi', 'GSVIVG01008587001' => 'vvi', 'GSVIVG01018849001' => 'vvi', 'GSVIVG01032432001' => 'vvi', 'HanXRQChr02g0034131' => 'han', 'HanXRQChr02g0035981' => 'han', 'HanXRQChr02g0035991' => 'han', 'HanXRQChr05g0155611' => 'han', 'HanXRQChr05g0155621' => 'han', 'HanXRQChr08g0236501' => 'han', 'HanXRQChr09g0261321' => 'han', 'HanXRQChr09g0272081' => 'han', 'HanXRQChr10g0310741' => 'han', 'HanXRQChr11g0325591' => 'han', 'HanXRQChr12g0385691' => 'han', 'HanXRQChr13g0387801' => 'han', 'HanXRQChr15g0463011' => 'han', 'Haze_03826' => 'cav', 'Haze_03827' => 'cav', 'Haze_07183' => 'cav', 'Haze_07537' => 'cav', 'Haze_07539' => 'cav', 'Haze_12461' => 'cav', 'Haze_16115' => 'cav', 'Haze_16808' => 'cav', 'Haze_18531' => 'cav', 'Hma1.2p1_0046F.1_g026700' => 'hma', 'Hma1.2p1_0046F.1_g026710' => 'hma', 'Hma1.2p1_0168F.1_g074340' => 'hma', 'Hma1.2p1_0266F.1_g107030' => 'hma', 'Hma1.2p1_0266F.1_g107060' => 'hma', 'Hma1.2p1_0275F.1_g110510' => 'hma', 'Hma1.2p1_0592F.1_g185490' => 'hma', 'Hma1.2p1_0592F.1_g185500' => 'hma', 'Hma1.2p1_0592F.1_g185510' => 'hma', 'Hma1.2p1_0592F.1_g185520' => 'hma', 'Hma1.2p1_0592F.1_g185530' => 'hma', 'Hma1.2p1_0818F.1_g223450' => 'hma', 'HPP92_009708' => 'vpl', 'HPP92_009793' => 'vpl', 'HPP92_009796' => 'vpl', 'HPP92_009797' => 'vpl', 'HPP92_014940' => 'vpl', 'HPP92_014988' => 'vpl', 'Hund02463' => 'sun', 'Hund02760' => 'sun', 'Hund05071' => 'sun', 'Hund10108' => 'sun', 'Hund11204' => 'sun', 'Hund14016' => 'sun', 'Hund16464' => 'sun', 'Lalb_Chr09g0333391' => 'lal', 'Lalb_Chr11g0070461' => 'lal', 'Lalb_Chr12g0201671' => 'lal', 'Lalb_Chr13g0297161' => 'lal', 'Lj1g0002823' => 'lja', 'Lj3C1074T6' => 'lonja', 'Lj4A212T28' => 'lonja', 'Lj4g0005516' => 'lja', 'Lj4g0013705' => 'lja', 'Lj4g0027865' => 'lja', 'Lj5C92G16' => 'lonja', 'Lj5C92T12' => 'lonja', 'Lj7C596T3' => 'lonja', 'Lj9A446G59' => 'lonja', 'Lj9A482G21' => 'lonja', 'Lsat_1_v5_gn_1_28261' => 'lsa', 'Lsat_1_v5_gn_1_28281' => 'lsa', 'Lsat_1_v5_gn_1_32721' => 'lsa', 'Lsat_1_v5_gn_4_151760' => 'lsa', 'Lsat_1_v5_gn_4_2120' => 'lsa', 'Lsat_1_v5_gn_4_75761' => 'lsa', 'Lsat_1_v5_gn_5_10920' => 'lsa', 'Manes.02G099900' => 'mes', 'Manes.11G096200' => 'mes', 'Manes.12G007200' => 'mes', 'Manes.14G048300' => 'mes', 'Manes.17G114700' => 'mes', 'Mapoly0002s0070' => 'mpo', 'Mapoly0029s0099' => 'mpo', 'MBI07_g24742_MAGBIO' => 'mbi', 'MBI10_g27988_MAGBIO' => 'mbi', 'MBI11_g13057_MAGBIO' => 'mbi', 'MD02G1137200' => 'mdo', 'MD06G1137200' => 'mdo', 'MD07G1122300' => 'mdo', 'MD09G1078200' => 'mdo', 'MD13G1123700' => 'mdo', 'MD14G1151900' => 'mdo', 'MD17G1030900' => 'mdo', 'MD17G1068200' => 'mdo', 'MD17G1068600' => 'mdo', 'Medtr3g077540' => 'mtr', 'Medtr4g105530' => 'mtr', 'Medtr8g076580' => 'mtr', 'Medtr8g076590' => 'mtr', 'Medtr8g096410' => 'mtr', 'MELO3C016411.2' => 'cme', 'MELO3C017780.2' => 'cme', 'MELO3C022560.2' => 'cme', 'MELO3C026187.2' => 'cme', 'MELO3C026286.2' => 'cme', 'MELO3C032854.2' => 'cme', 'Migut.H02495' => 'egut', 'Migut.I00561' => 'egut', 'Migut.K01015' => 'egut', 'Migut.K01016' => 'egut', 'Migut.L00743' => 'egut', 'Migut.L00744' => 'egut', 'Migut.L00746' => 'egut', 'Migut.L00798' => 'egut', 'Migut.L00799' => 'egut', 'Migut.N02096' => 'egut', 'MSTRG.11259' => 'ama', 'MSTRG.23142' => 'ama', 'MSTRG.2499' => 'ama', 'Nitab4.5_0000003g0730' => 'nta', 'Nitab4.5_0000137g0020' => 'nta', 'Nitab4.5_0000721g0210' => 'nta', 'Nitab4.5_0000723g0050' => 'nta', 'Nitab4.5_0000913g0070' => 'nta', 'Nitab4.5_0001332g0040' => 'nta', 'Nitab4.5_0001771g0050' => 'nta', 'Nitab4.5_0001918g0050' => 'nta', 'Nitab4.5_0002686g0030' => 'nta', 'Nitab4.5_0003156g0020' => 'nta', 'Nitab4.5_0003383g0040' => 'nta', 'Nitab4.5_0003918g0010' => 'nta', 'Nitab4.5_0006760g0010' => 'nta', 'Nn1g05981' => 'nnu', 'Nn1g06288' => 'nnu', 'Nn3g16371' => 'nnu', 'Nn3g16786' => 'nnu', 'Nn4g22232' => 'nnu', 'Oeu005144.1' => 'oeu', 'Oeu005145.1' => 'oeu', 'Oeu011348.1' => 'oeu', 'Oeu016415.1' => 'oeu', 'Oeu023501.1' => 'oeu', 'Oeu044473.1' => 'oeu', 'Oeu048892.2' => 'oeu', 'Os01g0549200' => 'osa', 'Os02g0469300' => 'osa', 'Os04g0311100' => 'osa', 'Os06g0474900' => 'osa', 'Os10g0181700' => 'osa', 'Os11g0454800' => 'osa', 'Peaxi162Scf00037g00714' => 'pax', 'Peaxi162Scf00084g01217' => 'pax', 'Peaxi162Scf00257g00217' => 'pax', 'Peaxi162Scf00516g00215' => 'pax', 'Peaxi162Scf00689g00123' => 'pax', 'PGR044G2719' => 'pgr', 'PGR083G1360' => 'pgr', 'PGR102G2849' => 'pgr', 'PGR119G2534' => 'pgr', 'PGSC0003DMG400003538' => 'stu', 'PGSC0003DMG400028138' => 'stu', 'PGSC0003DMG400031732' => 'stu', 'PGSC0003DMG400038165' => 'stu', 'Phvul.002G284600' => 'pvu', 'Phvul.003G258200' => 'pvu', 'Phvul.009G176500' => 'pvu', 'Potri.003G167201' => 'ptr', 'Potri.005G118400' => 'ptr', 'Potri.012G089000' => 'ptr', 'Potri.012G102800' => 'ptr', 'Potri.015G079400' => 'ptr', 'Potri.015G100900' => 'ptr', 'Pp3c14_9810' => 'ppa', 'Pp3c15_10450' => 'ppa', 'Pp3c20_19150' => 'ppa', 'Pp3c23_12740' => 'ppa', 'Pp3c23_6310' => 'ppa', 'Pp3c24_3720' => 'ppa', 'Pp3c27_2580' => 'ppa', 'Pp3c9_8990' => 'ppa', 'PRCOL_00002854' => 'pco', 'Prupe.1G221200' => 'ppe', 'Prupe.3G289000' => 'ppe', 'Prupe.5G147000' => 'ppe', 'Prupe.6G157300' => 'ppe', 'Prupe.7G163400' => 'ppe', 'Psat0s2177g0040' => 'psa', 'Psat3g174760' => 'psa', 'Psat3g192160' => 'psa', 'Psat4g058520' => 'psa', 'Psat4g096840' => 'psa', 'Psat7g037320' => 'psa', 'PSO017G1274' => 'pso', 'PSO017G5166' => 'pso', 'PSO063G4558' => 'pso', 'PSO170G4458' => 'pso', 'PSO170G5005' => 'pso', 'PSO210G6156' => 'pso', 'PSO210G6635' => 'pso', 'PSO210G7397' => 'pso', 'PSO210G7700' => 'pso', 'PSO455G0035' => 'pso', 'PSO455G0180' => 'pso', 'PSO478G4515' => 'pso', 'PSO832G1305' => 'pso', 'PSO832G3489' => 'pso', 'QL02p075247' => 'qlo', 'QL03p051148' => 'qlo', 'QL05p010313' => 'qlo', 'QL06p034627' => 'qlo', 'QL10p001889' => 'qlo', 'QL10p010846' => 'qlo', 'RcHm_v2.0_Chr1g0350621' => 'rch', 'RcHm_v2.0_Chr1g0350641' => 'rch', 'RcHm_v2.0_Chr2g0092891' => 'rch', 'RcHm_v2.0_Chr2g0100251' => 'rch', 'RcHm_v2.0_Chr2g0158661' => 'rch', 'RcHm_v2.0_Chr2g0172741' => 'rch', 'RcHm_v2.0_Chr4g0429571' => 'rch', 'RcHm_v2.0_Chr5g0042471' => 'rch', 'RcHm_v2.0_Chr7g0189451' => 'rch', 'Rhsim08G0052000' => 'rsi', 'Rhsim08G0174400' => 'rsi', 'Rhsim08G0193200' => 'rsi', 'Rhsim10G0214800' => 'rsi', 'Rhsim10G0214900' => 'rsi', 'Rhsim10G0215000' => 'rsi', 'Rhsim12G0022900' => 'rsi', 'Rhsim12G0177500' => 'rsi', 'Rhsim12G0177700' => 'rsi', 'Sabra03G0122600' => 'sbr', 'Sabra05G0097400' => 'sbr', 'Sabra12G0064100' => 'sbr', 'Sabra15G0121300' => 'sbr', 'SalBow2G0642' => 'sbo', 'SalBow5G2667' => 'sbo', 'SalBow5G4873' => 'sbo', 'SalBow8G2395' => 'sbo', 'Sc03g0003290' => 'sci', 'Sc10g0010130' => 'sci', 'Sc22g0003650' => 'sci', 'Sed0001603' => 'sed', 'Sed0004259' => 'sed', 'Sed0006789' => 'sed', 'Sed0011838' => 'sed', 'Sed0012964' => 'sed', 'Sed0016383' => 'sed', 'Sed0019010' => 'sed', 'Sed0020188' => 'sed', 'SEGI_04702' => 'sgi', 'SEGI_17231' => 'sgi', 'SEGI_18877' => 'sgi', 'SEGI_25196' => 'sgi', 'SEGI_25515' => 'sgi', 'SEGI_28445' => 'sgi', 'SEGI_37452' => 'sgi', 'SGA_v2.0_scaffold188G40336' => 'sas', 'SGA_v2.0_scaffold228G43247' => 'sas', 'SGA_v2.0_scaffold280G46853' => 'sas', 'SGA_v2.0_scaffold34G13808' => 'sas', 'SGA_v2.0_scaffold40G15576' => 'sas', 'SGA_v2.0_scaffold611G53188' => 'sas', 'SGA_v2.0_scaffold78G25461' => 'sas', 'SGA_v2.0_scaffold90G27888' => 'sas', 'SHI08601' => 'shi', 'SHI08606' => 'shi', 'SHI17117' => 'shi', 'SHI17119' => 'shi', 'SMO118G0201' => 'smo', 'SMO169G0247' => 'smo', 'SMO176G0006' => 'smo', 'SMO176G0015' => 'smo', 'SMO202G0006' => 'smo', 'SMO240G0050' => 'smo', 'SMO286G0009' => 'smo', 'SMO338G0033' => 'smo', 'SMO356G0533' => 'smo', 'SMO364G0382' => 'smo', 'SMO367G0166' => 'smo', 'SMO367G1098' => 'smo', 'Solyc01g009920.3' => 'sly', 'Solyc01g099300.3' => 'sly', 'Solyc02g084700.3' => 'sly', 'Solyc03g097520.3' => 'sly', 'Solyc06g071580.3' => 'sly', 'Solyc10g081760.3' => 'sly', 'Sopen01g005480' => 'spe', 'Sopen01g042850' => 'spe', 'Sopen02g029370' => 'spe', 'Sopen03g028280' => 'spe', 'Sopen06g027870' => 'spe', 'Sopen10g032270' => 'spe', 'Sp5g18180' => 'spa', 'Sp6g12880' => 'spa', 'Sp6g30850' => 'spa', 'Sp7g22960' => 'spa', 'Sp7g34010' => 'spa', 'SpUn1326_0010' => 'spa', 'TAR371G0242' => 'tar', 'TAR622G0638' => 'tar', 'TAR628G1548' => 'tar', 'TAR629G1079' => 'tar', 'TAR629G3413' => 'tar', 'THA.LOC104804249' => 'tha', 'THA.LOC104808315' => 'tha', 'THA.LOC104809238' => 'tha', 'THA.LOC104825484' => 'tha', 'Thecc.01G025500' => 'tca', 'Thecc.03G015800' => 'tca', 'Thecc.03G018000' => 'tca', 'Thecc.03G134800' => 'tca', 'Thecc.04G014700' => 'tca', 'Thhalv10006991m.g' => 'esa', 'Thhalv10012707m.g' => 'esa', 'Thhalv10015739m.g' => 'esa', 'Thhalv10024553m.g' => 'esa', 'Thhalv10024673m.g' => 'esa', 'Thhalv10029187m.g' => 'esa', 'TPR.G12971' => 'tpr', 'TPR.G29396' => 'tpr', 'TPR.G33376' => 'tpr', 'TPR.G35508' => 'tpr', 'TPR.G35516' => 'tpr', 'TPR.G37317' => 'tpr', 'TPR.G37389' => 'tpr', 'TPR.G37523' => 'tpr', 'TPR.G559' => 'tpr', 'TWI14G0070' => 'twi', 'TWI14G0729' => 'twi', 'TWI18G0596' => 'twi', 'TWI39G0780' => 'twi', 'TWI39G0850' => 'twi', 'TWI73G1052' => 'twi', 'unitig_52.g17485' => 'ugi', 'unitig_61.g26355' => 'ugi', 'vmacro01040' => 'vma', 'vmacro16731' => 'vma', 'vmacro18270' => 'vma', 'vmacro19142' => 'vma', 'vmacro19407' => 'vma', 'vmacro19408' => 'vma', 'vmacro21899' => 'vma', 'vmacro21900' => 'vma', 'vmacro21901' => 'vma', 'VMungo0251G0490' => 'vmu', 'VMungo0251G1748' => 'vmu', 'VMungo1309G0421' => 'vmu', 'Zm00001eb086500' => 'zma', 'Zm00001eb150680' => 'zma', 'Zm00001eb162330' => 'zma', 'Zm00001eb203130' => 'zma', 'Zm00001eb369480' => 'zma', 'Zm00001eb382340' => 'zma', 'Zm00001eb416360' => 'zma' ) $gf_id = 'HOM05D000902' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000902' ) $data_identifier = 'HOM05D000902' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 13, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 10, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 6, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 9, 'hma' => (int) 12, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 4, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 6, 'ppa' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 6, 'rch' => (int) 9, 'rsi' => (int) 9, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 12, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 3, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416360' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000902', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '663', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02470' => 'bna', 'A01p16260' => 'bna', 'A02p01680' => 'bna', 'A03p16600' => 'bna', 'A03p55660' => 'bna', 'A03p64160' => 'bna', 'A03p64170' => 'bna', 'A08p31900' => 'bna', 'A09p59530' => 'bna', 'A10p08230' => 'bna', 'A10p25090' => 'bna', 'Aa31LG3G7100' => 'aar', 'Aa31LG3G7110' => 'aar', 'Aa31LG6G13160' => 'aar', 'Aa31LG7G10770' => 'aar', 'Aa31LG7G3830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2723' => 'aag', 'Actinidia08045' => 'ach', 'Actinidia08888' => 'ach', 'Actinidia18333' => 'ach', 'Actinidia19334' => 'ach', 'Actinidia25552' => 'ach', 'Actinidia26089' => 'ach', 'Actinidia30615' => 'ach', 'Actinidia30616' => 'ach', 'Actinidia33083' => 'ach', 'Actinidia35762' => 'ach', 'Ah.02g110620' => 'amhyb', 'Ah.11g046390' => 'amhyb', 'AL1G31670' => 'aly', 'AL6G23730' => 'aly', 'AL7G14740' => 'aly', 'AL7G14750' => 'aly', 'AL7G14760' => 'aly', 'AL7G28220' => 'aly', 'AL8G24940' => 'aly', 'Aqoxy3G01665' => 'aox', 'Aqoxy3G02853' => 'aox', 'Aqoxy5G01513' => 'aox', 'Aqoxy5G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8SKA4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ75LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKDA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0LJZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7REX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZP4YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWX7I5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2QKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS0L9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPCD8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q161UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC7XCF' => 'arhy', 'AT1G19100' => 'ath', 'AT4G24970' => 'ath', 'AT4G36270' => 'ath', 'AT4G36280' => 'ath', 'AT4G36290' => 'ath', 'AT5G13130' => 'ath', 'AT5G50780' => 'ath', 'ATR0582G266' => 'atr', 'ATR0661G195' => 'atr', 'ATR1152G031' => 'atr', 'Atru.chr11.2382' => 'acertr', 'Atru.chr12.2337' => 'acertr', 'Atru.chr3.744' => 'acertr', 'Atru.chr6.1870' => 'acertr', 'Atru.chr9.2515' => 'acertr', 'AUR62004120' => 'cqu', 'AUR62005667' => 'cqu', 'AUR62007634' => 'cqu', 'AUR62008186' => 'cqu', 'AUR62008187' => 'cqu', 'AUR62008188' => 'cqu', 'AUR62027954' => 'cqu', 'AUR62028766' => 'cqu', 'AUR62028767' => 'cqu', 'AUR62028768' => 'cqu', 'AUR62028886' => 'cqu', 'AUR62029563' => 'cqu', 'AUR62038832' => 'cqu', 'BcaB01g04149' => 'bca', 'BcaB03g12940' => 'bca', 'BcaB03g13090' => 'bca', 'BcaB03g14466' => 'bca', 'BcaB05g24035' => 'bca', 'BcaC01g06050' => 'bca', 'BcaC04g19148' => 'bca', 'BcaC04g20761' => 'bca', 'BcaC06g32845' => 'bca', 'BcaC07g41274' => 'bca', 'BcaC09g50827' => 'bca', 'BcaNung00741' => 'bca', 'BcaNung00742' => 'bca', 'BcaNung01859' => 'bca', 'BcaNung03985' => 'bca', 'BcaNung03989' => 'bca', 'BcaNung05661' => 'bca', 'BolC1t00257H' => 'bol', 'BolC1t01956H' => 'bol', 'BolC2t06534H' => 'bol', 'BolC3t14334H' => 'bol', 'BolC5t30451H' => 'bol', 'BolC7t45880H' => 'bol', 'BolC7t46586H' => 'bol', 'BolC8t49301H' => 'bol', 'BolC8t51837H' => 'bol', 'BolC9t56822H' => 'bol', 'BolC9t59235H' => 'bol', 'BraA01t00234Z' => 'bra', 'BraA01t01563Z' => 'bra', 'BraA02t05147Z' => 'bra', 'BraA03t10947Z' => 'bra', 'BraA03t14633Z' => 'bra', 'BraA08t35112Z' => 'bra', 'BraA09t41330Z' => 'bra', 'BraA10t44570Z' => 'bra', 'C01p02670' => 'bna', 'C01p20260' => 'bna', 'C02p05890' => 'bna', 'C03p19530' => 'bna', 'C05p17470' => 'bna', 'C07p53900' => 'bna', 'C07p61630' => 'bna', 'C08p16800' => 'bna', 'C08p42810' => 'bna', 'C09p39480' => 'bna', 'C09p63980' => 'bna', 'CAN.G1001.7' => 'can', 'CAN.G1034.55' => 'can', 'CAN.G143.7' => 'can', 'CAN.G3340.1' => 'can', 'CAN.G358.19' => 'can', 'CAN.G373.2' => 'can', 'CAN.G674.16' => 'can', 'CAN.G674.17' => 'can', 'CAN.G674.18' => 'can', 'CAN.G732.2' => 'can', 'CAN.G732.3' => 'can', 'CAN.G993.39' => 'can', 'CANSAT01G2052' => 'cansat', 'CANSAT80G0070' => 'cansat', 'CANSAT80G0483' => 'cansat', 'CANSAT80G0625' => 'cansat', 'CARHR019690' => 'chi', 'CARHR080280' => 'chi', 'CARHR152750' => 'chi', 'CARHR152760' => 'chi', 'CARHR152770' => 'chi', 'CARHR200340' => 'chi', 'CARHR232370' => 'chi', 'CARHR244670' => 'chi', 'CARHR244680' => 'chi', 'CARHR257520' => 'chi', 'Carub.0001s1872' => 'cru', 'Carub.0006s1130' => 'cru', 'Carub.0007s0396' => 'cru', 'Carub.0007s0397' => 'cru', 'Carub.0007s1608' => 'cru', 'Carub.0008s1068' => 'cru', 'Carub.0008s1077' => 'cru', 'Ca_16158_v3' => 'car', 'Ca_17571_v3' => 'car', 'Ca_21936_v3' => 'car', 'Ca_22350_v3' => 'car', 'CBR_g22445' => 'cbr', 'CBR_g26290' => 'cbr', 'Cc04_g09610' => 'ccan', 'Cc04_g12280' => 'ccan', 'Cc07_g10230' => 'ccan', 'CDE02G0093' => 'cde', 'CDE02G0701' => 'cde', 'CDE04G1050' => 'cde', 'CDE05G1833' => 'cde', 'CDE05G3058' => 'cde', 'CDE05G3380' => 'cde', 'CDE06G0536' => 'cde', 'Cfa006923' => 'cfa', 'Cfa009402' => 'cfa', 'Cfa018751' => 'cfa', 'Cfa019164' => 'cfa', 'Cfa022935' => 'cfa', 'Ciclev10019081m.g' => 'ccl', 'Ciclev10025076m.g' => 'ccl', 'Ciclev10030712m.g' => 'ccl', 'Ciclev10033760m.g' => 'ccl', 'CiPaw.05G105600' => 'cil', 'CiPaw.08G136700' => 'cil', 'CiPaw.11G003900' => 'cil', 'CiPaw.11G023700' => 'cil', 'CiPaw.12G003700' => 'cil', 'ClCG06G017100' => 'cla', 'ClCG06G018110' => 'cla', 'ClCG07G008800' => 'cla', 'ClCG07G015330' => 'cla', 'COL.COLO4_13698' => 'col', 'COL.COLO4_16659' => 'col', 'COL.COLO4_21986' => 'col', 'COL.COLO4_24049' => 'col', 'COL.COLO4_29061' => 'col', 'COL.COLO4_29075' => 'col', 'COL.COLO4_30094' => 'col', 'Cpa.g.c33689' => 'cpa', 'Cpa.g.sc108.39' => 'cpa', 'Cpa.g.sc108.41' => 'cpa', 'Cpa.g.sc1163.1' => 'cpa', 'Cpa.g.sc4.155' => 'cpa', 'Cpa.g.sc6.194' => 'cpa', 'CsaV3_1G000340' => 'csa', 'CsaV3_1G001400' => 'csa', 'CsaV3_4G002220' => 'csa', 'CsaV3_4G005370' => 'csa', 'CSS0007487' => 'camsi', 'CSS0008066' => 'camsi', 'CSS0009120' => 'camsi', 'CSS0015512' => 'camsi', 'CSS0022409' => 'camsi', 'CSS0025358' => 'camsi', 'CSS0044547' => 'camsi', 'DCAR_013057' => 'dca', 'DCAR_015058' => 'dca', 'DCAR_016027' => 'dca', 'DCAR_017327' => 'dca', 'DCAR_020743' => 'dca', 'DCAR_026157' => 'dca', 'DCAR_032339' => 'dca', 'DCAR_032340' => 'dca', 'Dinv11200' => 'din', 'Dinv11201' => 'din', 'Dinv20631' => 'din', 'Dinv23182' => 'din', 'Dinv33466' => 'din', 'Dinv33583' => 'din', 'Dinv38565' => 'din', 'Duzib068G0200' => 'dzi', 'Duzib147G0132' => 'dzi', 'Duzib147G0635' => 'dzi', 'Duzib205G1670' => 'dzi', 'Duzib251G0606' => 'dzi', 'ECA232G3336' => 'eca', 'ECA232G3763' => 'eca', 'ECA232G4845' => 'eca', 'ECA234G1607' => 'eca', 'ECA246G0932' => 'eca', 'ECA247G0781' => 'eca', 'ECA247G1932' => 'eca', 'ECA247G2079' => 'eca', 'ECA247G3338' => 'eca', 'ECA247G4115' => 'eca', 'EL10Ac3g06552' => 'bvu', 'EL10Ac5g10721' => 'bvu', 'EL10Ac5g10722' => 'bvu', 'EL10Ac5g10723' => 'bvu', 'EL10Ac5g11361' => 'bvu', 'EL10Ac6g13553' => 'bvu', 'EL10As8g23872' => 'bvu', 'Eucgr.B00250' => 'egr', 'Eucgr.B00251' => 'egr', 'Eucgr.B03533' => 'egr', 'Eucgr.I02381' => 'egr', 'Eucgr.K02700' => 'egr', 'FAN02G0174' => 'fan', 'FAN02G3146' => 'fan', 'FAN04G1672' => 'fan', 'FAN04G2273' => 'fan', 'FAN05G2791' => 'fan', 'FAN05G4035' => 'fan', 'FAN07G0834' => 'fan', 'FAN08G1198' => 'fan', 'FAN09G4182' => 'fan', 'FAN12G0496' => 'fan', 'FAN13G1027' => 'fan', 'FAN13G2951' => 'fan', 'FAN14G0705' => 'fan', 'FAN14G0720' => 'fan', 'FAN17G0201' => 'fan', 'FAN17G2665' => 'fan', 'FAN18G1456' => 'fan', 'FAN18G1525' => 'fan', 'FAN18G3500' => 'fan', 'FAN28G2670' => 'fan', 'FvH4_1g12391' => 'fve', 'FvH4_4g23220' => 'fve', 'FvH4_5g08810' => 'fve', 'FvH4_5g28960' => 'fve', 'FvH4_6g42820' => 'fve', 'FvH4_6g51110' => 'fve', 'Glyma.02G051802' => 'gma', 'Glyma.04G185300' => 'gma', 'Glyma.05G202900' => 'gma', 'Glyma.08G010300' => 'gma', 'Glyma.16G131900' => 'gma', 'Glyma.17G087900' => 'gma', 'Gohir.A07G048600' => 'ghi', 'Gohir.A11G179000' => 'ghi', 'Gohir.A12G140900' => 'ghi', 'Gohir.A12G140950' => 'ghi', 'Gohir.A12G191700' => 'ghi', 'Gohir.A13G086300' => 'ghi', 'Gohir.D07G052900' => 'ghi', 'Gohir.D11G186600' => 'ghi', 'Gohir.D12G145575' => 'ghi', 'Gohir.D12G145650' => 'ghi', 'Gohir.D12G145725' => 'ghi', 'Gohir.D12G194050' => 'ghi', 'Gohir.D13G091800' => 'ghi', 'Gorai.001G055900' => 'gra', 'Gorai.007G198400' => 'gra', 'Gorai.008G157000' => 'gra', 'Gorai.008G157100' => 'gra', 'Gorai.008G208700' => 'gra', 'Gorai.010G138700' => 'gra', 'GSVIVG01000977001' => 'vvi', 'GSVIVG01007708001' => 'vvi', 'GSVIVG01008587001' => 'vvi', 'GSVIVG01018849001' => 'vvi', 'GSVIVG01032432001' => 'vvi', 'HanXRQChr02g0034131' => 'han', 'HanXRQChr02g0035981' => 'han', 'HanXRQChr02g0035991' => 'han', 'HanXRQChr05g0155611' => 'han', 'HanXRQChr05g0155621' => 'han', 'HanXRQChr08g0236501' => 'han', 'HanXRQChr09g0261321' => 'han', 'HanXRQChr09g0272081' => 'han', 'HanXRQChr10g0310741' => 'han', 'HanXRQChr11g0325591' => 'han', 'HanXRQChr12g0385691' => 'han', 'HanXRQChr13g0387801' => 'han', 'HanXRQChr15g0463011' => 'han', 'Haze_03826' => 'cav', 'Haze_03827' => 'cav', 'Haze_07183' => 'cav', 'Haze_07537' => 'cav', 'Haze_07539' => 'cav', 'Haze_12461' => 'cav', 'Haze_16115' => 'cav', 'Haze_16808' => 'cav', 'Haze_18531' => 'cav', 'Hma1.2p1_0046F.1_g026700' => 'hma', 'Hma1.2p1_0046F.1_g026710' => 'hma', 'Hma1.2p1_0168F.1_g074340' => 'hma', 'Hma1.2p1_0266F.1_g107030' => 'hma', 'Hma1.2p1_0266F.1_g107060' => 'hma', 'Hma1.2p1_0275F.1_g110510' => 'hma', 'Hma1.2p1_0592F.1_g185490' => 'hma', 'Hma1.2p1_0592F.1_g185500' => 'hma', 'Hma1.2p1_0592F.1_g185510' => 'hma', 'Hma1.2p1_0592F.1_g185520' => 'hma', 'Hma1.2p1_0592F.1_g185530' => 'hma', 'Hma1.2p1_0818F.1_g223450' => 'hma', 'HPP92_009708' => 'vpl', 'HPP92_009793' => 'vpl', 'HPP92_009796' => 'vpl', 'HPP92_009797' => 'vpl', 'HPP92_014940' => 'vpl', 'HPP92_014988' => 'vpl', 'Hund02463' => 'sun', 'Hund02760' => 'sun', 'Hund05071' => 'sun', 'Hund10108' => 'sun', 'Hund11204' => 'sun', 'Hund14016' => 'sun', 'Hund16464' => 'sun', 'Lalb_Chr09g0333391' => 'lal', 'Lalb_Chr11g0070461' => 'lal', 'Lalb_Chr12g0201671' => 'lal', 'Lalb_Chr13g0297161' => 'lal', 'Lj1g0002823' => 'lja', 'Lj3C1074T6' => 'lonja', 'Lj4A212T28' => 'lonja', 'Lj4g0005516' => 'lja', 'Lj4g0013705' => 'lja', 'Lj4g0027865' => 'lja', 'Lj5C92G16' => 'lonja', 'Lj5C92T12' => 'lonja', 'Lj7C596T3' => 'lonja', 'Lj9A446G59' => 'lonja', 'Lj9A482G21' => 'lonja', 'Lsat_1_v5_gn_1_28261' => 'lsa', 'Lsat_1_v5_gn_1_28281' => 'lsa', 'Lsat_1_v5_gn_1_32721' => 'lsa', 'Lsat_1_v5_gn_4_151760' => 'lsa', 'Lsat_1_v5_gn_4_2120' => 'lsa', 'Lsat_1_v5_gn_4_75761' => 'lsa', 'Lsat_1_v5_gn_5_10920' => 'lsa', 'Manes.02G099900' => 'mes', 'Manes.11G096200' => 'mes', 'Manes.12G007200' => 'mes', 'Manes.14G048300' => 'mes', 'Manes.17G114700' => 'mes', 'Mapoly0002s0070' => 'mpo', 'Mapoly0029s0099' => 'mpo', 'MBI07_g24742_MAGBIO' => 'mbi', 'MBI10_g27988_MAGBIO' => 'mbi', 'MBI11_g13057_MAGBIO' => 'mbi', 'MD02G1137200' => 'mdo', 'MD06G1137200' => 'mdo', 'MD07G1122300' => 'mdo', 'MD09G1078200' => 'mdo', 'MD13G1123700' => 'mdo', 'MD14G1151900' => 'mdo', 'MD17G1030900' => 'mdo', 'MD17G1068200' => 'mdo', 'MD17G1068600' => 'mdo', 'Medtr3g077540' => 'mtr', 'Medtr4g105530' => 'mtr', 'Medtr8g076580' => 'mtr', 'Medtr8g076590' => 'mtr', 'Medtr8g096410' => 'mtr', 'MELO3C016411.2' => 'cme', 'MELO3C017780.2' => 'cme', 'MELO3C022560.2' => 'cme', 'MELO3C026187.2' => 'cme', 'MELO3C026286.2' => 'cme', 'MELO3C032854.2' => 'cme', 'Migut.H02495' => 'egut', 'Migut.I00561' => 'egut', 'Migut.K01015' => 'egut', 'Migut.K01016' => 'egut', 'Migut.L00743' => 'egut', 'Migut.L00744' => 'egut', 'Migut.L00746' => 'egut', 'Migut.L00798' => 'egut', 'Migut.L00799' => 'egut', 'Migut.N02096' => 'egut', 'MSTRG.11259' => 'ama', 'MSTRG.23142' => 'ama', 'MSTRG.2499' => 'ama', 'Nitab4.5_0000003g0730' => 'nta', 'Nitab4.5_0000137g0020' => 'nta', 'Nitab4.5_0000721g0210' => 'nta', 'Nitab4.5_0000723g0050' => 'nta', 'Nitab4.5_0000913g0070' => 'nta', 'Nitab4.5_0001332g0040' => 'nta', 'Nitab4.5_0001771g0050' => 'nta', 'Nitab4.5_0001918g0050' => 'nta', 'Nitab4.5_0002686g0030' => 'nta', 'Nitab4.5_0003156g0020' => 'nta', 'Nitab4.5_0003383g0040' => 'nta', 'Nitab4.5_0003918g0010' => 'nta', 'Nitab4.5_0006760g0010' => 'nta', 'Nn1g05981' => 'nnu', 'Nn1g06288' => 'nnu', 'Nn3g16371' => 'nnu', 'Nn3g16786' => 'nnu', 'Nn4g22232' => 'nnu', 'Oeu005144.1' => 'oeu', 'Oeu005145.1' => 'oeu', 'Oeu011348.1' => 'oeu', 'Oeu016415.1' => 'oeu', 'Oeu023501.1' => 'oeu', 'Oeu044473.1' => 'oeu', 'Oeu048892.2' => 'oeu', 'Os01g0549200' => 'osa', 'Os02g0469300' => 'osa', 'Os04g0311100' => 'osa', 'Os06g0474900' => 'osa', 'Os10g0181700' => 'osa', 'Os11g0454800' => 'osa', 'Peaxi162Scf00037g00714' => 'pax', 'Peaxi162Scf00084g01217' => 'pax', 'Peaxi162Scf00257g00217' => 'pax', 'Peaxi162Scf00516g00215' => 'pax', 'Peaxi162Scf00689g00123' => 'pax', 'PGR044G2719' => 'pgr', 'PGR083G1360' => 'pgr', 'PGR102G2849' => 'pgr', 'PGR119G2534' => 'pgr', 'PGSC0003DMG400003538' => 'stu', 'PGSC0003DMG400028138' => 'stu', 'PGSC0003DMG400031732' => 'stu', 'PGSC0003DMG400038165' => 'stu', 'Phvul.002G284600' => 'pvu', 'Phvul.003G258200' => 'pvu', 'Phvul.009G176500' => 'pvu', 'Potri.003G167201' => 'ptr', 'Potri.005G118400' => 'ptr', 'Potri.012G089000' => 'ptr', 'Potri.012G102800' => 'ptr', 'Potri.015G079400' => 'ptr', 'Potri.015G100900' => 'ptr', 'Pp3c14_9810' => 'ppa', 'Pp3c15_10450' => 'ppa', 'Pp3c20_19150' => 'ppa', 'Pp3c23_12740' => 'ppa', 'Pp3c23_6310' => 'ppa', 'Pp3c24_3720' => 'ppa', 'Pp3c27_2580' => 'ppa', 'Pp3c9_8990' => 'ppa', 'PRCOL_00002854' => 'pco', 'Prupe.1G221200' => 'ppe', 'Prupe.3G289000' => 'ppe', 'Prupe.5G147000' => 'ppe', 'Prupe.6G157300' => 'ppe', 'Prupe.7G163400' => 'ppe', 'Psat0s2177g0040' => 'psa', 'Psat3g174760' => 'psa', 'Psat3g192160' => 'psa', 'Psat4g058520' => 'psa', 'Psat4g096840' => 'psa', 'Psat7g037320' => 'psa', 'PSO017G1274' => 'pso', 'PSO017G5166' => 'pso', 'PSO063G4558' => 'pso', 'PSO170G4458' => 'pso', 'PSO170G5005' => 'pso', 'PSO210G6156' => 'pso', 'PSO210G6635' => 'pso', 'PSO210G7397' => 'pso', 'PSO210G7700' => 'pso', 'PSO455G0035' => 'pso', 'PSO455G0180' => 'pso', 'PSO478G4515' => 'pso', 'PSO832G1305' => 'pso', 'PSO832G3489' => 'pso', 'QL02p075247' => 'qlo', 'QL03p051148' => 'qlo', 'QL05p010313' => 'qlo', 'QL06p034627' => 'qlo', 'QL10p001889' => 'qlo', 'QL10p010846' => 'qlo', 'RcHm_v2.0_Chr1g0350621' => 'rch', 'RcHm_v2.0_Chr1g0350641' => 'rch', 'RcHm_v2.0_Chr2g0092891' => 'rch', 'RcHm_v2.0_Chr2g0100251' => 'rch', 'RcHm_v2.0_Chr2g0158661' => 'rch', 'RcHm_v2.0_Chr2g0172741' => 'rch', 'RcHm_v2.0_Chr4g0429571' => 'rch', 'RcHm_v2.0_Chr5g0042471' => 'rch', 'RcHm_v2.0_Chr7g0189451' => 'rch', 'Rhsim08G0052000' => 'rsi', 'Rhsim08G0174400' => 'rsi', 'Rhsim08G0193200' => 'rsi', 'Rhsim10G0214800' => 'rsi', 'Rhsim10G0214900' => 'rsi', 'Rhsim10G0215000' => 'rsi', 'Rhsim12G0022900' => 'rsi', 'Rhsim12G0177500' => 'rsi', 'Rhsim12G0177700' => 'rsi', 'Sabra03G0122600' => 'sbr', 'Sabra05G0097400' => 'sbr', 'Sabra12G0064100' => 'sbr', 'Sabra15G0121300' => 'sbr', 'SalBow2G0642' => 'sbo', 'SalBow5G2667' => 'sbo', 'SalBow5G4873' => 'sbo', 'SalBow8G2395' => 'sbo', 'Sc03g0003290' => 'sci', 'Sc10g0010130' => 'sci', 'Sc22g0003650' => 'sci', 'Sed0001603' => 'sed', 'Sed0004259' => 'sed', 'Sed0006789' => 'sed', 'Sed0011838' => 'sed', 'Sed0012964' => 'sed', 'Sed0016383' => 'sed', 'Sed0019010' => 'sed', 'Sed0020188' => 'sed', 'SEGI_04702' => 'sgi', 'SEGI_17231' => 'sgi', 'SEGI_18877' => 'sgi', 'SEGI_25196' => 'sgi', 'SEGI_25515' => 'sgi', 'SEGI_28445' => 'sgi', 'SEGI_37452' => 'sgi', 'SGA_v2.0_scaffold188G40336' => 'sas', 'SGA_v2.0_scaffold228G43247' => 'sas', 'SGA_v2.0_scaffold280G46853' => 'sas', 'SGA_v2.0_scaffold34G13808' => 'sas', 'SGA_v2.0_scaffold40G15576' => 'sas', 'SGA_v2.0_scaffold611G53188' => 'sas', 'SGA_v2.0_scaffold78G25461' => 'sas', 'SGA_v2.0_scaffold90G27888' => 'sas', 'SHI08601' => 'shi', 'SHI08606' => 'shi', 'SHI17117' => 'shi', 'SHI17119' => 'shi', 'SMO118G0201' => 'smo', 'SMO169G0247' => 'smo', 'SMO176G0006' => 'smo', 'SMO176G0015' => 'smo', 'SMO202G0006' => 'smo', 'SMO240G0050' => 'smo', 'SMO286G0009' => 'smo', 'SMO338G0033' => 'smo', 'SMO356G0533' => 'smo', 'SMO364G0382' => 'smo', 'SMO367G0166' => 'smo', 'SMO367G1098' => 'smo', 'Solyc01g009920.3' => 'sly', 'Solyc01g099300.3' => 'sly', 'Solyc02g084700.3' => 'sly', 'Solyc03g097520.3' => 'sly', 'Solyc06g071580.3' => 'sly', 'Solyc10g081760.3' => 'sly', 'Sopen01g005480' => 'spe', 'Sopen01g042850' => 'spe', 'Sopen02g029370' => 'spe', 'Sopen03g028280' => 'spe', 'Sopen06g027870' => 'spe', 'Sopen10g032270' => 'spe', 'Sp5g18180' => 'spa', 'Sp6g12880' => 'spa', 'Sp6g30850' => 'spa', 'Sp7g22960' => 'spa', 'Sp7g34010' => 'spa', 'SpUn1326_0010' => 'spa', 'TAR371G0242' => 'tar', 'TAR622G0638' => 'tar', 'TAR628G1548' => 'tar', 'TAR629G1079' => 'tar', 'TAR629G3413' => 'tar', 'THA.LOC104804249' => 'tha', 'THA.LOC104808315' => 'tha', 'THA.LOC104809238' => 'tha', 'THA.LOC104825484' => 'tha', 'Thecc.01G025500' => 'tca', 'Thecc.03G015800' => 'tca', 'Thecc.03G018000' => 'tca', 'Thecc.03G134800' => 'tca', 'Thecc.04G014700' => 'tca', 'Thhalv10006991m.g' => 'esa', 'Thhalv10012707m.g' => 'esa', 'Thhalv10015739m.g' => 'esa', 'Thhalv10024553m.g' => 'esa', 'Thhalv10024673m.g' => 'esa', 'Thhalv10029187m.g' => 'esa', 'TPR.G12971' => 'tpr', 'TPR.G29396' => 'tpr', 'TPR.G33376' => 'tpr', 'TPR.G35508' => 'tpr', 'TPR.G35516' => 'tpr', 'TPR.G37317' => 'tpr', 'TPR.G37389' => 'tpr', 'TPR.G37523' => 'tpr', 'TPR.G559' => 'tpr', 'TWI14G0070' => 'twi', 'TWI14G0729' => 'twi', 'TWI18G0596' => 'twi', 'TWI39G0780' => 'twi', 'TWI39G0850' => 'twi', 'TWI73G1052' => 'twi', 'unitig_52.g17485' => 'ugi', 'unitig_61.g26355' => 'ugi', 'vmacro01040' => 'vma', 'vmacro16731' => 'vma', 'vmacro18270' => 'vma', 'vmacro19142' => 'vma', 'vmacro19407' => 'vma', 'vmacro19408' => 'vma', 'vmacro21899' => 'vma', 'vmacro21900' => 'vma', 'vmacro21901' => 'vma', 'VMungo0251G0490' => 'vmu', 'VMungo0251G1748' => 'vmu', 'VMungo1309G0421' => 'vmu', 'Zm00001eb086500' => 'zma', 'Zm00001eb150680' => 'zma', 'Zm00001eb162330' => 'zma', 'Zm00001eb203130' => 'zma', 'Zm00001eb369480' => 'zma', 'Zm00001eb382340' => 'zma', 'Zm00001eb416360' => 'zma' ), 'gf_id' => 'HOM05D000902', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000902' ), 'data_identifier' => 'HOM05D000902', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000902', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '663', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02470' => 'bna', 'A01p16260' => 'bna', 'A02p01680' => 'bna', 'A03p16600' => 'bna', 'A03p55660' => 'bna', 'A03p64160' => 'bna', 'A03p64170' => 'bna', 'A08p31900' => 'bna', 'A09p59530' => 'bna', 'A10p08230' => 'bna', 'A10p25090' => 'bna', 'Aa31LG3G7100' => 'aar', 'Aa31LG3G7110' => 'aar', 'Aa31LG6G13160' => 'aar', 'Aa31LG7G10770' => 'aar', 'Aa31LG7G3830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2723' => 'aag', 'Actinidia08045' => 'ach', 'Actinidia08888' => 'ach', 'Actinidia18333' => 'ach', 'Actinidia19334' => 'ach', 'Actinidia25552' => 'ach', 'Actinidia26089' => 'ach', 'Actinidia30615' => 'ach', 'Actinidia30616' => 'ach', 'Actinidia33083' => 'ach', 'Actinidia35762' => 'ach', 'Ah.02g110620' => 'amhyb', 'Ah.11g046390' => 'amhyb', 'AL1G31670' => 'aly', 'AL6G23730' => 'aly', 'AL7G14740' => 'aly', 'AL7G14750' => 'aly', 'AL7G14760' => 'aly', 'AL7G28220' => 'aly', 'AL8G24940' => 'aly', 'Aqoxy3G01665' => 'aox', 'Aqoxy3G02853' => 'aox', 'Aqoxy5G01513' => 'aox', 'Aqoxy5G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8SKA4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ75LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKDA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0LJZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7REX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZP4YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWX7I5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2QKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS0L9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPCD8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q161UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC7XCF' => 'arhy', 'AT1G19100' => 'ath', 'AT4G24970' => 'ath', 'AT4G36270' => 'ath', 'AT4G36280' => 'ath', 'AT4G36290' => 'ath', 'AT5G13130' => 'ath', 'AT5G50780' => 'ath', 'ATR0582G266' => 'atr', 'ATR0661G195' => 'atr', 'ATR1152G031' => 'atr', 'Atru.chr11.2382' => 'acertr', 'Atru.chr12.2337' => 'acertr', 'Atru.chr3.744' => 'acertr', 'Atru.chr6.1870' => 'acertr', 'Atru.chr9.2515' => 'acertr', 'AUR62004120' => 'cqu', 'AUR62005667' => 'cqu', 'AUR62007634' => 'cqu', 'AUR62008186' => 'cqu', 'AUR62008187' => 'cqu', 'AUR62008188' => 'cqu', 'AUR62027954' => 'cqu', 'AUR62028766' => 'cqu', 'AUR62028767' => 'cqu', 'AUR62028768' => 'cqu', 'AUR62028886' => 'cqu', 'AUR62029563' => 'cqu', 'AUR62038832' => 'cqu', 'BcaB01g04149' => 'bca', 'BcaB03g12940' => 'bca', 'BcaB03g13090' => 'bca', 'BcaB03g14466' => 'bca', 'BcaB05g24035' => 'bca', 'BcaC01g06050' => 'bca', 'BcaC04g19148' => 'bca', 'BcaC04g20761' => 'bca', 'BcaC06g32845' => 'bca', 'BcaC07g41274' => 'bca', 'BcaC09g50827' => 'bca', 'BcaNung00741' => 'bca', 'BcaNung00742' => 'bca', 'BcaNung01859' => 'bca', 'BcaNung03985' => 'bca', 'BcaNung03989' => 'bca', 'BcaNung05661' => 'bca', 'BolC1t00257H' => 'bol', 'BolC1t01956H' => 'bol', 'BolC2t06534H' => 'bol', 'BolC3t14334H' => 'bol', 'BolC5t30451H' => 'bol', 'BolC7t45880H' => 'bol', 'BolC7t46586H' => 'bol', 'BolC8t49301H' => 'bol', 'BolC8t51837H' => 'bol', 'BolC9t56822H' => 'bol', 'BolC9t59235H' => 'bol', 'BraA01t00234Z' => 'bra', 'BraA01t01563Z' => 'bra', 'BraA02t05147Z' => 'bra', 'BraA03t10947Z' => 'bra', 'BraA03t14633Z' => 'bra', 'BraA08t35112Z' => 'bra', 'BraA09t41330Z' => 'bra', 'BraA10t44570Z' => 'bra', 'C01p02670' => 'bna', 'C01p20260' => 'bna', 'C02p05890' => 'bna', 'C03p19530' => 'bna', 'C05p17470' => 'bna', 'C07p53900' => 'bna', 'C07p61630' => 'bna', 'C08p16800' => 'bna', 'C08p42810' => 'bna', 'C09p39480' => 'bna', 'C09p63980' => 'bna', 'CAN.G1001.7' => 'can', 'CAN.G1034.55' => 'can', 'CAN.G143.7' => 'can', 'CAN.G3340.1' => 'can', 'CAN.G358.19' => 'can', 'CAN.G373.2' => 'can', 'CAN.G674.16' => 'can', 'CAN.G674.17' => 'can', 'CAN.G674.18' => 'can', 'CAN.G732.2' => 'can', 'CAN.G732.3' => 'can', 'CAN.G993.39' => 'can', 'CANSAT01G2052' => 'cansat', 'CANSAT80G0070' => 'cansat', 'CANSAT80G0483' => 'cansat', 'CANSAT80G0625' => 'cansat', 'CARHR019690' => 'chi', 'CARHR080280' => 'chi', 'CARHR152750' => 'chi', 'CARHR152760' => 'chi', 'CARHR152770' => 'chi', 'CARHR200340' => 'chi', 'CARHR232370' => 'chi', 'CARHR244670' => 'chi', 'CARHR244680' => 'chi', 'CARHR257520' => 'chi', 'Carub.0001s1872' => 'cru', 'Carub.0006s1130' => 'cru', 'Carub.0007s0396' => 'cru', 'Carub.0007s0397' => 'cru', 'Carub.0007s1608' => 'cru', 'Carub.0008s1068' => 'cru', 'Carub.0008s1077' => 'cru', 'Ca_16158_v3' => 'car', 'Ca_17571_v3' => 'car', 'Ca_21936_v3' => 'car', 'Ca_22350_v3' => 'car', 'CBR_g22445' => 'cbr', 'CBR_g26290' => 'cbr', 'Cc04_g09610' => 'ccan', 'Cc04_g12280' => 'ccan', 'Cc07_g10230' => 'ccan', 'CDE02G0093' => 'cde', 'CDE02G0701' => 'cde', 'CDE04G1050' => 'cde', 'CDE05G1833' => 'cde', 'CDE05G3058' => 'cde', 'CDE05G3380' => 'cde', 'CDE06G0536' => 'cde', 'Cfa006923' => 'cfa', 'Cfa009402' => 'cfa', 'Cfa018751' => 'cfa', 'Cfa019164' => 'cfa', 'Cfa022935' => 'cfa', 'Ciclev10019081m.g' => 'ccl', 'Ciclev10025076m.g' => 'ccl', 'Ciclev10030712m.g' => 'ccl', 'Ciclev10033760m.g' => 'ccl', 'CiPaw.05G105600' => 'cil', 'CiPaw.08G136700' => 'cil', 'CiPaw.11G003900' => 'cil', 'CiPaw.11G023700' => 'cil', 'CiPaw.12G003700' => 'cil', 'ClCG06G017100' => 'cla', 'ClCG06G018110' => 'cla', 'ClCG07G008800' => 'cla', 'ClCG07G015330' => 'cla', 'COL.COLO4_13698' => 'col', 'COL.COLO4_16659' => 'col', 'COL.COLO4_21986' => 'col', 'COL.COLO4_24049' => 'col', 'COL.COLO4_29061' => 'col', 'COL.COLO4_29075' => 'col', 'COL.COLO4_30094' => 'col', 'Cpa.g.c33689' => 'cpa', 'Cpa.g.sc108.39' => 'cpa', 'Cpa.g.sc108.41' => 'cpa', 'Cpa.g.sc1163.1' => 'cpa', 'Cpa.g.sc4.155' => 'cpa', 'Cpa.g.sc6.194' => 'cpa', 'CsaV3_1G000340' => 'csa', 'CsaV3_1G001400' => 'csa', 'CsaV3_4G002220' => 'csa', 'CsaV3_4G005370' => 'csa', 'CSS0007487' => 'camsi', 'CSS0008066' => 'camsi', 'CSS0009120' => 'camsi', 'CSS0015512' => 'camsi', 'CSS0022409' => 'camsi', 'CSS0025358' => 'camsi', 'CSS0044547' => 'camsi', 'DCAR_013057' => 'dca', 'DCAR_015058' => 'dca', 'DCAR_016027' => 'dca', 'DCAR_017327' => 'dca', 'DCAR_020743' => 'dca', 'DCAR_026157' => 'dca', 'DCAR_032339' => 'dca', 'DCAR_032340' => 'dca', 'Dinv11200' => 'din', 'Dinv11201' => 'din', 'Dinv20631' => 'din', 'Dinv23182' => 'din', 'Dinv33466' => 'din', 'Dinv33583' => 'din', 'Dinv38565' => 'din', 'Duzib068G0200' => 'dzi', 'Duzib147G0132' => 'dzi', 'Duzib147G0635' => 'dzi', 'Duzib205G1670' => 'dzi', 'Duzib251G0606' => 'dzi', 'ECA232G3336' => 'eca', 'ECA232G3763' => 'eca', 'ECA232G4845' => 'eca', 'ECA234G1607' => 'eca', 'ECA246G0932' => 'eca', 'ECA247G0781' => 'eca', 'ECA247G1932' => 'eca', 'ECA247G2079' => 'eca', 'ECA247G3338' => 'eca', 'ECA247G4115' => 'eca', 'EL10Ac3g06552' => 'bvu', 'EL10Ac5g10721' => 'bvu', 'EL10Ac5g10722' => 'bvu', 'EL10Ac5g10723' => 'bvu', 'EL10Ac5g11361' => 'bvu', 'EL10Ac6g13553' => 'bvu', 'EL10As8g23872' => 'bvu', 'Eucgr.B00250' => 'egr', 'Eucgr.B00251' => 'egr', 'Eucgr.B03533' => 'egr', 'Eucgr.I02381' => 'egr', 'Eucgr.K02700' => 'egr', 'FAN02G0174' => 'fan', 'FAN02G3146' => 'fan', 'FAN04G1672' => 'fan', 'FAN04G2273' => 'fan', 'FAN05G2791' => 'fan', 'FAN05G4035' => 'fan', 'FAN07G0834' => 'fan', 'FAN08G1198' => 'fan', 'FAN09G4182' => 'fan', 'FAN12G0496' => 'fan', 'FAN13G1027' => 'fan', 'FAN13G2951' => 'fan', 'FAN14G0705' => 'fan', 'FAN14G0720' => 'fan', 'FAN17G0201' => 'fan', 'FAN17G2665' => 'fan', 'FAN18G1456' => 'fan', 'FAN18G1525' => 'fan', 'FAN18G3500' => 'fan', 'FAN28G2670' => 'fan', 'FvH4_1g12391' => 'fve', 'FvH4_4g23220' => 'fve', 'FvH4_5g08810' => 'fve', 'FvH4_5g28960' => 'fve', 'FvH4_6g42820' => 'fve', 'FvH4_6g51110' => 'fve', 'Glyma.02G051802' => 'gma', 'Glyma.04G185300' => 'gma', 'Glyma.05G202900' => 'gma', 'Glyma.08G010300' => 'gma', 'Glyma.16G131900' => 'gma', 'Glyma.17G087900' => 'gma', 'Gohir.A07G048600' => 'ghi', 'Gohir.A11G179000' => 'ghi', 'Gohir.A12G140900' => 'ghi', 'Gohir.A12G140950' => 'ghi', 'Gohir.A12G191700' => 'ghi', 'Gohir.A13G086300' => 'ghi', 'Gohir.D07G052900' => 'ghi', 'Gohir.D11G186600' => 'ghi', 'Gohir.D12G145575' => 'ghi', 'Gohir.D12G145650' => 'ghi', 'Gohir.D12G145725' => 'ghi', 'Gohir.D12G194050' => 'ghi', 'Gohir.D13G091800' => 'ghi', 'Gorai.001G055900' => 'gra', 'Gorai.007G198400' => 'gra', 'Gorai.008G157000' => 'gra', 'Gorai.008G157100' => 'gra', 'Gorai.008G208700' => 'gra', 'Gorai.010G138700' => 'gra', 'GSVIVG01000977001' => 'vvi', 'GSVIVG01007708001' => 'vvi', 'GSVIVG01008587001' => 'vvi', 'GSVIVG01018849001' => 'vvi', 'GSVIVG01032432001' => 'vvi', 'HanXRQChr02g0034131' => 'han', 'HanXRQChr02g0035981' => 'han', 'HanXRQChr02g0035991' => 'han', 'HanXRQChr05g0155611' => 'han', 'HanXRQChr05g0155621' => 'han', 'HanXRQChr08g0236501' => 'han', 'HanXRQChr09g0261321' => 'han', 'HanXRQChr09g0272081' => 'han', 'HanXRQChr10g0310741' => 'han', 'HanXRQChr11g0325591' => 'han', 'HanXRQChr12g0385691' => 'han', 'HanXRQChr13g0387801' => 'han', 'HanXRQChr15g0463011' => 'han', 'Haze_03826' => 'cav', 'Haze_03827' => 'cav', 'Haze_07183' => 'cav', 'Haze_07537' => 'cav', 'Haze_07539' => 'cav', 'Haze_12461' => 'cav', 'Haze_16115' => 'cav', 'Haze_16808' => 'cav', 'Haze_18531' => 'cav', 'Hma1.2p1_0046F.1_g026700' => 'hma', 'Hma1.2p1_0046F.1_g026710' => 'hma', 'Hma1.2p1_0168F.1_g074340' => 'hma', 'Hma1.2p1_0266F.1_g107030' => 'hma', 'Hma1.2p1_0266F.1_g107060' => 'hma', 'Hma1.2p1_0275F.1_g110510' => 'hma', 'Hma1.2p1_0592F.1_g185490' => 'hma', 'Hma1.2p1_0592F.1_g185500' => 'hma', 'Hma1.2p1_0592F.1_g185510' => 'hma', 'Hma1.2p1_0592F.1_g185520' => 'hma', 'Hma1.2p1_0592F.1_g185530' => 'hma', 'Hma1.2p1_0818F.1_g223450' => 'hma', 'HPP92_009708' => 'vpl', 'HPP92_009793' => 'vpl', 'HPP92_009796' => 'vpl', 'HPP92_009797' => 'vpl', 'HPP92_014940' => 'vpl', 'HPP92_014988' => 'vpl', 'Hund02463' => 'sun', 'Hund02760' => 'sun', 'Hund05071' => 'sun', 'Hund10108' => 'sun', 'Hund11204' => 'sun', 'Hund14016' => 'sun', 'Hund16464' => 'sun', 'Lalb_Chr09g0333391' => 'lal', 'Lalb_Chr11g0070461' => 'lal', 'Lalb_Chr12g0201671' => 'lal', 'Lalb_Chr13g0297161' => 'lal', 'Lj1g0002823' => 'lja', 'Lj3C1074T6' => 'lonja', 'Lj4A212T28' => 'lonja', 'Lj4g0005516' => 'lja', 'Lj4g0013705' => 'lja', 'Lj4g0027865' => 'lja', 'Lj5C92G16' => 'lonja', 'Lj5C92T12' => 'lonja', 'Lj7C596T3' => 'lonja', 'Lj9A446G59' => 'lonja', 'Lj9A482G21' => 'lonja', 'Lsat_1_v5_gn_1_28261' => 'lsa', 'Lsat_1_v5_gn_1_28281' => 'lsa', 'Lsat_1_v5_gn_1_32721' => 'lsa', 'Lsat_1_v5_gn_4_151760' => 'lsa', 'Lsat_1_v5_gn_4_2120' => 'lsa', 'Lsat_1_v5_gn_4_75761' => 'lsa', 'Lsat_1_v5_gn_5_10920' => 'lsa', 'Manes.02G099900' => 'mes', 'Manes.11G096200' => 'mes', 'Manes.12G007200' => 'mes', 'Manes.14G048300' => 'mes', 'Manes.17G114700' => 'mes', 'Mapoly0002s0070' => 'mpo', 'Mapoly0029s0099' => 'mpo', 'MBI07_g24742_MAGBIO' => 'mbi', 'MBI10_g27988_MAGBIO' => 'mbi', 'MBI11_g13057_MAGBIO' => 'mbi', 'MD02G1137200' => 'mdo', 'MD06G1137200' => 'mdo', 'MD07G1122300' => 'mdo', 'MD09G1078200' => 'mdo', 'MD13G1123700' => 'mdo', 'MD14G1151900' => 'mdo', 'MD17G1030900' => 'mdo', 'MD17G1068200' => 'mdo', 'MD17G1068600' => 'mdo', 'Medtr3g077540' => 'mtr', 'Medtr4g105530' => 'mtr', 'Medtr8g076580' => 'mtr', 'Medtr8g076590' => 'mtr', 'Medtr8g096410' => 'mtr', 'MELO3C016411.2' => 'cme', 'MELO3C017780.2' => 'cme', 'MELO3C022560.2' => 'cme', 'MELO3C026187.2' => 'cme', 'MELO3C026286.2' => 'cme', 'MELO3C032854.2' => 'cme', 'Migut.H02495' => 'egut', 'Migut.I00561' => 'egut', 'Migut.K01015' => 'egut', 'Migut.K01016' => 'egut', 'Migut.L00743' => 'egut', 'Migut.L00744' => 'egut', 'Migut.L00746' => 'egut', 'Migut.L00798' => 'egut', 'Migut.L00799' => 'egut', 'Migut.N02096' => 'egut', 'MSTRG.11259' => 'ama', 'MSTRG.23142' => 'ama', 'MSTRG.2499' => 'ama', 'Nitab4.5_0000003g0730' => 'nta', 'Nitab4.5_0000137g0020' => 'nta', 'Nitab4.5_0000721g0210' => 'nta', 'Nitab4.5_0000723g0050' => 'nta', 'Nitab4.5_0000913g0070' => 'nta', 'Nitab4.5_0001332g0040' => 'nta', 'Nitab4.5_0001771g0050' => 'nta', 'Nitab4.5_0001918g0050' => 'nta', 'Nitab4.5_0002686g0030' => 'nta', 'Nitab4.5_0003156g0020' => 'nta', 'Nitab4.5_0003383g0040' => 'nta', 'Nitab4.5_0003918g0010' => 'nta', 'Nitab4.5_0006760g0010' => 'nta', 'Nn1g05981' => 'nnu', 'Nn1g06288' => 'nnu', 'Nn3g16371' => 'nnu', 'Nn3g16786' => 'nnu', 'Nn4g22232' => 'nnu', 'Oeu005144.1' => 'oeu', 'Oeu005145.1' => 'oeu', 'Oeu011348.1' => 'oeu', 'Oeu016415.1' => 'oeu', 'Oeu023501.1' => 'oeu', 'Oeu044473.1' => 'oeu', 'Oeu048892.2' => 'oeu', 'Os01g0549200' => 'osa', 'Os02g0469300' => 'osa', 'Os04g0311100' => 'osa', 'Os06g0474900' => 'osa', 'Os10g0181700' => 'osa', 'Os11g0454800' => 'osa', 'Peaxi162Scf00037g00714' => 'pax', 'Peaxi162Scf00084g01217' => 'pax', 'Peaxi162Scf00257g00217' => 'pax', 'Peaxi162Scf00516g00215' => 'pax', 'Peaxi162Scf00689g00123' => 'pax', 'PGR044G2719' => 'pgr', 'PGR083G1360' => 'pgr', 'PGR102G2849' => 'pgr', 'PGR119G2534' => 'pgr', 'PGSC0003DMG400003538' => 'stu', 'PGSC0003DMG400028138' => 'stu', 'PGSC0003DMG400031732' => 'stu', 'PGSC0003DMG400038165' => 'stu', 'Phvul.002G284600' => 'pvu', 'Phvul.003G258200' => 'pvu', 'Phvul.009G176500' => 'pvu', 'Potri.003G167201' => 'ptr', 'Potri.005G118400' => 'ptr', 'Potri.012G089000' => 'ptr', 'Potri.012G102800' => 'ptr', 'Potri.015G079400' => 'ptr', 'Potri.015G100900' => 'ptr', 'Pp3c14_9810' => 'ppa', 'Pp3c15_10450' => 'ppa', 'Pp3c20_19150' => 'ppa', 'Pp3c23_12740' => 'ppa', 'Pp3c23_6310' => 'ppa', 'Pp3c24_3720' => 'ppa', 'Pp3c27_2580' => 'ppa', 'Pp3c9_8990' => 'ppa', 'PRCOL_00002854' => 'pco', 'Prupe.1G221200' => 'ppe', 'Prupe.3G289000' => 'ppe', 'Prupe.5G147000' => 'ppe', 'Prupe.6G157300' => 'ppe', 'Prupe.7G163400' => 'ppe', 'Psat0s2177g0040' => 'psa', 'Psat3g174760' => 'psa', 'Psat3g192160' => 'psa', 'Psat4g058520' => 'psa', 'Psat4g096840' => 'psa', 'Psat7g037320' => 'psa', 'PSO017G1274' => 'pso', 'PSO017G5166' => 'pso', 'PSO063G4558' => 'pso', 'PSO170G4458' => 'pso', 'PSO170G5005' => 'pso', 'PSO210G6156' => 'pso', 'PSO210G6635' => 'pso', 'PSO210G7397' => 'pso', 'PSO210G7700' => 'pso', 'PSO455G0035' => 'pso', 'PSO455G0180' => 'pso', 'PSO478G4515' => 'pso', 'PSO832G1305' => 'pso', 'PSO832G3489' => 'pso', 'QL02p075247' => 'qlo', 'QL03p051148' => 'qlo', 'QL05p010313' => 'qlo', 'QL06p034627' => 'qlo', 'QL10p001889' => 'qlo', 'QL10p010846' => 'qlo', 'RcHm_v2.0_Chr1g0350621' => 'rch', 'RcHm_v2.0_Chr1g0350641' => 'rch', 'RcHm_v2.0_Chr2g0092891' => 'rch', 'RcHm_v2.0_Chr2g0100251' => 'rch', 'RcHm_v2.0_Chr2g0158661' => 'rch', 'RcHm_v2.0_Chr2g0172741' => 'rch', 'RcHm_v2.0_Chr4g0429571' => 'rch', 'RcHm_v2.0_Chr5g0042471' => 'rch', 'RcHm_v2.0_Chr7g0189451' => 'rch', 'Rhsim08G0052000' => 'rsi', 'Rhsim08G0174400' => 'rsi', 'Rhsim08G0193200' => 'rsi', 'Rhsim10G0214800' => 'rsi', 'Rhsim10G0214900' => 'rsi', 'Rhsim10G0215000' => 'rsi', 'Rhsim12G0022900' => 'rsi', 'Rhsim12G0177500' => 'rsi', 'Rhsim12G0177700' => 'rsi', 'Sabra03G0122600' => 'sbr', 'Sabra05G0097400' => 'sbr', 'Sabra12G0064100' => 'sbr', 'Sabra15G0121300' => 'sbr', 'SalBow2G0642' => 'sbo', 'SalBow5G2667' => 'sbo', 'SalBow5G4873' => 'sbo', 'SalBow8G2395' => 'sbo', 'Sc03g0003290' => 'sci', 'Sc10g0010130' => 'sci', 'Sc22g0003650' => 'sci', 'Sed0001603' => 'sed', 'Sed0004259' => 'sed', 'Sed0006789' => 'sed', 'Sed0011838' => 'sed', 'Sed0012964' => 'sed', 'Sed0016383' => 'sed', 'Sed0019010' => 'sed', 'Sed0020188' => 'sed', 'SEGI_04702' => 'sgi', 'SEGI_17231' => 'sgi', 'SEGI_18877' => 'sgi', 'SEGI_25196' => 'sgi', 'SEGI_25515' => 'sgi', 'SEGI_28445' => 'sgi', 'SEGI_37452' => 'sgi', 'SGA_v2.0_scaffold188G40336' => 'sas', 'SGA_v2.0_scaffold228G43247' => 'sas', 'SGA_v2.0_scaffold280G46853' => 'sas', 'SGA_v2.0_scaffold34G13808' => 'sas', 'SGA_v2.0_scaffold40G15576' => 'sas', 'SGA_v2.0_scaffold611G53188' => 'sas', 'SGA_v2.0_scaffold78G25461' => 'sas', 'SGA_v2.0_scaffold90G27888' => 'sas', 'SHI08601' => 'shi', 'SHI08606' => 'shi', 'SHI17117' => 'shi', 'SHI17119' => 'shi', 'SMO118G0201' => 'smo', 'SMO169G0247' => 'smo', 'SMO176G0006' => 'smo', 'SMO176G0015' => 'smo', 'SMO202G0006' => 'smo', 'SMO240G0050' => 'smo', 'SMO286G0009' => 'smo', 'SMO338G0033' => 'smo', 'SMO356G0533' => 'smo', 'SMO364G0382' => 'smo', 'SMO367G0166' => 'smo', 'SMO367G1098' => 'smo', 'Solyc01g009920.3' => 'sly', 'Solyc01g099300.3' => 'sly', 'Solyc02g084700.3' => 'sly', 'Solyc03g097520.3' => 'sly', 'Solyc06g071580.3' => 'sly', 'Solyc10g081760.3' => 'sly', 'Sopen01g005480' => 'spe', 'Sopen01g042850' => 'spe', 'Sopen02g029370' => 'spe', 'Sopen03g028280' => 'spe', 'Sopen06g027870' => 'spe', 'Sopen10g032270' => 'spe', 'Sp5g18180' => 'spa', 'Sp6g12880' => 'spa', 'Sp6g30850' => 'spa', 'Sp7g22960' => 'spa', 'Sp7g34010' => 'spa', 'SpUn1326_0010' => 'spa', 'TAR371G0242' => 'tar', 'TAR622G0638' => 'tar', 'TAR628G1548' => 'tar', 'TAR629G1079' => 'tar', 'TAR629G3413' => 'tar', 'THA.LOC104804249' => 'tha', 'THA.LOC104808315' => 'tha', 'THA.LOC104809238' => 'tha', 'THA.LOC104825484' => 'tha', 'Thecc.01G025500' => 'tca', 'Thecc.03G015800' => 'tca', 'Thecc.03G018000' => 'tca', 'Thecc.03G134800' => 'tca', 'Thecc.04G014700' => 'tca', 'Thhalv10006991m.g' => 'esa', 'Thhalv10012707m.g' => 'esa', 'Thhalv10015739m.g' => 'esa', 'Thhalv10024553m.g' => 'esa', 'Thhalv10024673m.g' => 'esa', 'Thhalv10029187m.g' => 'esa', 'TPR.G12971' => 'tpr', 'TPR.G29396' => 'tpr', 'TPR.G33376' => 'tpr', 'TPR.G35508' => 'tpr', 'TPR.G35516' => 'tpr', 'TPR.G37317' => 'tpr', 'TPR.G37389' => 'tpr', 'TPR.G37523' => 'tpr', 'TPR.G559' => 'tpr', 'TWI14G0070' => 'twi', 'TWI14G0729' => 'twi', 'TWI18G0596' => 'twi', 'TWI39G0780' => 'twi', 'TWI39G0850' => 'twi', 'TWI73G1052' => 'twi', 'unitig_52.g17485' => 'ugi', 'unitig_61.g26355' => 'ugi', 'vmacro01040' => 'vma', 'vmacro16731' => 'vma', 'vmacro18270' => 'vma', 'vmacro19142' => 'vma', 'vmacro19407' => 'vma', 'vmacro19408' => 'vma', 'vmacro21899' => 'vma', 'vmacro21900' => 'vma', 'vmacro21901' => 'vma', 'VMungo0251G0490' => 'vmu', 'VMungo0251G1748' => 'vmu', 'VMungo1309G0421' => 'vmu', 'Zm00001eb086500' => 'zma', 'Zm00001eb150680' => 'zma', 'Zm00001eb162330' => 'zma', 'Zm00001eb203130' => 'zma', 'Zm00001eb369480' => 'zma', 'Zm00001eb382340' => 'zma', 'Zm00001eb416360' => 'zma' ) $gf_id = 'HOM05D000902' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000902' ) $data_identifier = 'HOM05D000902' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 13, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 10, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 6, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 9, 'hma' => (int) 12, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 4, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 6, 'ppa' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 6, 'rch' => (int) 9, 'rsi' => (int) 9, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 12, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 3, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416360' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000902', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '663', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02470' => 'bna', 'A01p16260' => 'bna', 'A02p01680' => 'bna', 'A03p16600' => 'bna', 'A03p55660' => 'bna', 'A03p64160' => 'bna', 'A03p64170' => 'bna', 'A08p31900' => 'bna', 'A09p59530' => 'bna', 'A10p08230' => 'bna', 'A10p25090' => 'bna', 'Aa31LG3G7100' => 'aar', 'Aa31LG3G7110' => 'aar', 'Aa31LG6G13160' => 'aar', 'Aa31LG7G10770' => 'aar', 'Aa31LG7G3830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2723' => 'aag', 'Actinidia08045' => 'ach', 'Actinidia08888' => 'ach', 'Actinidia18333' => 'ach', 'Actinidia19334' => 'ach', 'Actinidia25552' => 'ach', 'Actinidia26089' => 'ach', 'Actinidia30615' => 'ach', 'Actinidia30616' => 'ach', 'Actinidia33083' => 'ach', 'Actinidia35762' => 'ach', 'Ah.02g110620' => 'amhyb', 'Ah.11g046390' => 'amhyb', 'AL1G31670' => 'aly', 'AL6G23730' => 'aly', 'AL7G14740' => 'aly', 'AL7G14750' => 'aly', 'AL7G14760' => 'aly', 'AL7G28220' => 'aly', 'AL8G24940' => 'aly', 'Aqoxy3G01665' => 'aox', 'Aqoxy3G02853' => 'aox', 'Aqoxy5G01513' => 'aox', 'Aqoxy5G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8SKA4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ75LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKDA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0LJZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7REX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZP4YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWX7I5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2QKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS0L9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPCD8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q161UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC7XCF' => 'arhy', 'AT1G19100' => 'ath', 'AT4G24970' => 'ath', 'AT4G36270' => 'ath', 'AT4G36280' => 'ath', 'AT4G36290' => 'ath', 'AT5G13130' => 'ath', 'AT5G50780' => 'ath', 'ATR0582G266' => 'atr', 'ATR0661G195' => 'atr', 'ATR1152G031' => 'atr', 'Atru.chr11.2382' => 'acertr', 'Atru.chr12.2337' => 'acertr', 'Atru.chr3.744' => 'acertr', 'Atru.chr6.1870' => 'acertr', 'Atru.chr9.2515' => 'acertr', 'AUR62004120' => 'cqu', 'AUR62005667' => 'cqu', 'AUR62007634' => 'cqu', 'AUR62008186' => 'cqu', 'AUR62008187' => 'cqu', 'AUR62008188' => 'cqu', 'AUR62027954' => 'cqu', 'AUR62028766' => 'cqu', 'AUR62028767' => 'cqu', 'AUR62028768' => 'cqu', 'AUR62028886' => 'cqu', 'AUR62029563' => 'cqu', 'AUR62038832' => 'cqu', 'BcaB01g04149' => 'bca', 'BcaB03g12940' => 'bca', 'BcaB03g13090' => 'bca', 'BcaB03g14466' => 'bca', 'BcaB05g24035' => 'bca', 'BcaC01g06050' => 'bca', 'BcaC04g19148' => 'bca', 'BcaC04g20761' => 'bca', 'BcaC06g32845' => 'bca', 'BcaC07g41274' => 'bca', 'BcaC09g50827' => 'bca', 'BcaNung00741' => 'bca', 'BcaNung00742' => 'bca', 'BcaNung01859' => 'bca', 'BcaNung03985' => 'bca', 'BcaNung03989' => 'bca', 'BcaNung05661' => 'bca', 'BolC1t00257H' => 'bol', 'BolC1t01956H' => 'bol', 'BolC2t06534H' => 'bol', 'BolC3t14334H' => 'bol', 'BolC5t30451H' => 'bol', 'BolC7t45880H' => 'bol', 'BolC7t46586H' => 'bol', 'BolC8t49301H' => 'bol', 'BolC8t51837H' => 'bol', 'BolC9t56822H' => 'bol', 'BolC9t59235H' => 'bol', 'BraA01t00234Z' => 'bra', 'BraA01t01563Z' => 'bra', 'BraA02t05147Z' => 'bra', 'BraA03t10947Z' => 'bra', 'BraA03t14633Z' => 'bra', 'BraA08t35112Z' => 'bra', 'BraA09t41330Z' => 'bra', 'BraA10t44570Z' => 'bra', 'C01p02670' => 'bna', 'C01p20260' => 'bna', 'C02p05890' => 'bna', 'C03p19530' => 'bna', 'C05p17470' => 'bna', 'C07p53900' => 'bna', 'C07p61630' => 'bna', 'C08p16800' => 'bna', 'C08p42810' => 'bna', 'C09p39480' => 'bna', 'C09p63980' => 'bna', 'CAN.G1001.7' => 'can', 'CAN.G1034.55' => 'can', 'CAN.G143.7' => 'can', 'CAN.G3340.1' => 'can', 'CAN.G358.19' => 'can', 'CAN.G373.2' => 'can', 'CAN.G674.16' => 'can', 'CAN.G674.17' => 'can', 'CAN.G674.18' => 'can', 'CAN.G732.2' => 'can', 'CAN.G732.3' => 'can', 'CAN.G993.39' => 'can', 'CANSAT01G2052' => 'cansat', 'CANSAT80G0070' => 'cansat', 'CANSAT80G0483' => 'cansat', 'CANSAT80G0625' => 'cansat', 'CARHR019690' => 'chi', 'CARHR080280' => 'chi', 'CARHR152750' => 'chi', 'CARHR152760' => 'chi', 'CARHR152770' => 'chi', 'CARHR200340' => 'chi', 'CARHR232370' => 'chi', 'CARHR244670' => 'chi', 'CARHR244680' => 'chi', 'CARHR257520' => 'chi', 'Carub.0001s1872' => 'cru', 'Carub.0006s1130' => 'cru', 'Carub.0007s0396' => 'cru', 'Carub.0007s0397' => 'cru', 'Carub.0007s1608' => 'cru', 'Carub.0008s1068' => 'cru', 'Carub.0008s1077' => 'cru', 'Ca_16158_v3' => 'car', 'Ca_17571_v3' => 'car', 'Ca_21936_v3' => 'car', 'Ca_22350_v3' => 'car', 'CBR_g22445' => 'cbr', 'CBR_g26290' => 'cbr', 'Cc04_g09610' => 'ccan', 'Cc04_g12280' => 'ccan', 'Cc07_g10230' => 'ccan', 'CDE02G0093' => 'cde', 'CDE02G0701' => 'cde', 'CDE04G1050' => 'cde', 'CDE05G1833' => 'cde', 'CDE05G3058' => 'cde', 'CDE05G3380' => 'cde', 'CDE06G0536' => 'cde', 'Cfa006923' => 'cfa', 'Cfa009402' => 'cfa', 'Cfa018751' => 'cfa', 'Cfa019164' => 'cfa', 'Cfa022935' => 'cfa', 'Ciclev10019081m.g' => 'ccl', 'Ciclev10025076m.g' => 'ccl', 'Ciclev10030712m.g' => 'ccl', 'Ciclev10033760m.g' => 'ccl', 'CiPaw.05G105600' => 'cil', 'CiPaw.08G136700' => 'cil', 'CiPaw.11G003900' => 'cil', 'CiPaw.11G023700' => 'cil', 'CiPaw.12G003700' => 'cil', 'ClCG06G017100' => 'cla', 'ClCG06G018110' => 'cla', 'ClCG07G008800' => 'cla', 'ClCG07G015330' => 'cla', 'COL.COLO4_13698' => 'col', 'COL.COLO4_16659' => 'col', 'COL.COLO4_21986' => 'col', 'COL.COLO4_24049' => 'col', 'COL.COLO4_29061' => 'col', 'COL.COLO4_29075' => 'col', 'COL.COLO4_30094' => 'col', 'Cpa.g.c33689' => 'cpa', 'Cpa.g.sc108.39' => 'cpa', 'Cpa.g.sc108.41' => 'cpa', 'Cpa.g.sc1163.1' => 'cpa', 'Cpa.g.sc4.155' => 'cpa', 'Cpa.g.sc6.194' => 'cpa', 'CsaV3_1G000340' => 'csa', 'CsaV3_1G001400' => 'csa', 'CsaV3_4G002220' => 'csa', 'CsaV3_4G005370' => 'csa', 'CSS0007487' => 'camsi', 'CSS0008066' => 'camsi', 'CSS0009120' => 'camsi', 'CSS0015512' => 'camsi', 'CSS0022409' => 'camsi', 'CSS0025358' => 'camsi', 'CSS0044547' => 'camsi', 'DCAR_013057' => 'dca', 'DCAR_015058' => 'dca', 'DCAR_016027' => 'dca', 'DCAR_017327' => 'dca', 'DCAR_020743' => 'dca', 'DCAR_026157' => 'dca', 'DCAR_032339' => 'dca', 'DCAR_032340' => 'dca', 'Dinv11200' => 'din', 'Dinv11201' => 'din', 'Dinv20631' => 'din', 'Dinv23182' => 'din', 'Dinv33466' => 'din', 'Dinv33583' => 'din', 'Dinv38565' => 'din', 'Duzib068G0200' => 'dzi', 'Duzib147G0132' => 'dzi', 'Duzib147G0635' => 'dzi', 'Duzib205G1670' => 'dzi', 'Duzib251G0606' => 'dzi', 'ECA232G3336' => 'eca', 'ECA232G3763' => 'eca', 'ECA232G4845' => 'eca', 'ECA234G1607' => 'eca', 'ECA246G0932' => 'eca', 'ECA247G0781' => 'eca', 'ECA247G1932' => 'eca', 'ECA247G2079' => 'eca', 'ECA247G3338' => 'eca', 'ECA247G4115' => 'eca', 'EL10Ac3g06552' => 'bvu', 'EL10Ac5g10721' => 'bvu', 'EL10Ac5g10722' => 'bvu', 'EL10Ac5g10723' => 'bvu', 'EL10Ac5g11361' => 'bvu', 'EL10Ac6g13553' => 'bvu', 'EL10As8g23872' => 'bvu', 'Eucgr.B00250' => 'egr', 'Eucgr.B00251' => 'egr', 'Eucgr.B03533' => 'egr', 'Eucgr.I02381' => 'egr', 'Eucgr.K02700' => 'egr', 'FAN02G0174' => 'fan', 'FAN02G3146' => 'fan', 'FAN04G1672' => 'fan', 'FAN04G2273' => 'fan', 'FAN05G2791' => 'fan', 'FAN05G4035' => 'fan', 'FAN07G0834' => 'fan', 'FAN08G1198' => 'fan', 'FAN09G4182' => 'fan', 'FAN12G0496' => 'fan', 'FAN13G1027' => 'fan', 'FAN13G2951' => 'fan', 'FAN14G0705' => 'fan', 'FAN14G0720' => 'fan', 'FAN17G0201' => 'fan', 'FAN17G2665' => 'fan', 'FAN18G1456' => 'fan', 'FAN18G1525' => 'fan', 'FAN18G3500' => 'fan', 'FAN28G2670' => 'fan', 'FvH4_1g12391' => 'fve', 'FvH4_4g23220' => 'fve', 'FvH4_5g08810' => 'fve', 'FvH4_5g28960' => 'fve', 'FvH4_6g42820' => 'fve', 'FvH4_6g51110' => 'fve', 'Glyma.02G051802' => 'gma', 'Glyma.04G185300' => 'gma', 'Glyma.05G202900' => 'gma', 'Glyma.08G010300' => 'gma', 'Glyma.16G131900' => 'gma', 'Glyma.17G087900' => 'gma', 'Gohir.A07G048600' => 'ghi', 'Gohir.A11G179000' => 'ghi', 'Gohir.A12G140900' => 'ghi', 'Gohir.A12G140950' => 'ghi', 'Gohir.A12G191700' => 'ghi', 'Gohir.A13G086300' => 'ghi', 'Gohir.D07G052900' => 'ghi', 'Gohir.D11G186600' => 'ghi', 'Gohir.D12G145575' => 'ghi', 'Gohir.D12G145650' => 'ghi', 'Gohir.D12G145725' => 'ghi', 'Gohir.D12G194050' => 'ghi', 'Gohir.D13G091800' => 'ghi', 'Gorai.001G055900' => 'gra', 'Gorai.007G198400' => 'gra', 'Gorai.008G157000' => 'gra', 'Gorai.008G157100' => 'gra', 'Gorai.008G208700' => 'gra', 'Gorai.010G138700' => 'gra', 'GSVIVG01000977001' => 'vvi', 'GSVIVG01007708001' => 'vvi', 'GSVIVG01008587001' => 'vvi', 'GSVIVG01018849001' => 'vvi', 'GSVIVG01032432001' => 'vvi', 'HanXRQChr02g0034131' => 'han', 'HanXRQChr02g0035981' => 'han', 'HanXRQChr02g0035991' => 'han', 'HanXRQChr05g0155611' => 'han', 'HanXRQChr05g0155621' => 'han', 'HanXRQChr08g0236501' => 'han', 'HanXRQChr09g0261321' => 'han', 'HanXRQChr09g0272081' => 'han', 'HanXRQChr10g0310741' => 'han', 'HanXRQChr11g0325591' => 'han', 'HanXRQChr12g0385691' => 'han', 'HanXRQChr13g0387801' => 'han', 'HanXRQChr15g0463011' => 'han', 'Haze_03826' => 'cav', 'Haze_03827' => 'cav', 'Haze_07183' => 'cav', 'Haze_07537' => 'cav', 'Haze_07539' => 'cav', 'Haze_12461' => 'cav', 'Haze_16115' => 'cav', 'Haze_16808' => 'cav', 'Haze_18531' => 'cav', 'Hma1.2p1_0046F.1_g026700' => 'hma', 'Hma1.2p1_0046F.1_g026710' => 'hma', 'Hma1.2p1_0168F.1_g074340' => 'hma', 'Hma1.2p1_0266F.1_g107030' => 'hma', 'Hma1.2p1_0266F.1_g107060' => 'hma', 'Hma1.2p1_0275F.1_g110510' => 'hma', 'Hma1.2p1_0592F.1_g185490' => 'hma', 'Hma1.2p1_0592F.1_g185500' => 'hma', 'Hma1.2p1_0592F.1_g185510' => 'hma', 'Hma1.2p1_0592F.1_g185520' => 'hma', 'Hma1.2p1_0592F.1_g185530' => 'hma', 'Hma1.2p1_0818F.1_g223450' => 'hma', 'HPP92_009708' => 'vpl', 'HPP92_009793' => 'vpl', 'HPP92_009796' => 'vpl', 'HPP92_009797' => 'vpl', 'HPP92_014940' => 'vpl', 'HPP92_014988' => 'vpl', 'Hund02463' => 'sun', 'Hund02760' => 'sun', 'Hund05071' => 'sun', 'Hund10108' => 'sun', 'Hund11204' => 'sun', 'Hund14016' => 'sun', 'Hund16464' => 'sun', 'Lalb_Chr09g0333391' => 'lal', 'Lalb_Chr11g0070461' => 'lal', 'Lalb_Chr12g0201671' => 'lal', 'Lalb_Chr13g0297161' => 'lal', 'Lj1g0002823' => 'lja', 'Lj3C1074T6' => 'lonja', 'Lj4A212T28' => 'lonja', 'Lj4g0005516' => 'lja', 'Lj4g0013705' => 'lja', 'Lj4g0027865' => 'lja', 'Lj5C92G16' => 'lonja', 'Lj5C92T12' => 'lonja', 'Lj7C596T3' => 'lonja', 'Lj9A446G59' => 'lonja', 'Lj9A482G21' => 'lonja', 'Lsat_1_v5_gn_1_28261' => 'lsa', 'Lsat_1_v5_gn_1_28281' => 'lsa', 'Lsat_1_v5_gn_1_32721' => 'lsa', 'Lsat_1_v5_gn_4_151760' => 'lsa', 'Lsat_1_v5_gn_4_2120' => 'lsa', 'Lsat_1_v5_gn_4_75761' => 'lsa', 'Lsat_1_v5_gn_5_10920' => 'lsa', 'Manes.02G099900' => 'mes', 'Manes.11G096200' => 'mes', 'Manes.12G007200' => 'mes', 'Manes.14G048300' => 'mes', 'Manes.17G114700' => 'mes', 'Mapoly0002s0070' => 'mpo', 'Mapoly0029s0099' => 'mpo', 'MBI07_g24742_MAGBIO' => 'mbi', 'MBI10_g27988_MAGBIO' => 'mbi', 'MBI11_g13057_MAGBIO' => 'mbi', 'MD02G1137200' => 'mdo', 'MD06G1137200' => 'mdo', 'MD07G1122300' => 'mdo', 'MD09G1078200' => 'mdo', 'MD13G1123700' => 'mdo', 'MD14G1151900' => 'mdo', 'MD17G1030900' => 'mdo', 'MD17G1068200' => 'mdo', 'MD17G1068600' => 'mdo', 'Medtr3g077540' => 'mtr', 'Medtr4g105530' => 'mtr', 'Medtr8g076580' => 'mtr', 'Medtr8g076590' => 'mtr', 'Medtr8g096410' => 'mtr', 'MELO3C016411.2' => 'cme', 'MELO3C017780.2' => 'cme', 'MELO3C022560.2' => 'cme', 'MELO3C026187.2' => 'cme', 'MELO3C026286.2' => 'cme', 'MELO3C032854.2' => 'cme', 'Migut.H02495' => 'egut', 'Migut.I00561' => 'egut', 'Migut.K01015' => 'egut', 'Migut.K01016' => 'egut', 'Migut.L00743' => 'egut', 'Migut.L00744' => 'egut', 'Migut.L00746' => 'egut', 'Migut.L00798' => 'egut', 'Migut.L00799' => 'egut', 'Migut.N02096' => 'egut', 'MSTRG.11259' => 'ama', 'MSTRG.23142' => 'ama', 'MSTRG.2499' => 'ama', 'Nitab4.5_0000003g0730' => 'nta', 'Nitab4.5_0000137g0020' => 'nta', 'Nitab4.5_0000721g0210' => 'nta', 'Nitab4.5_0000723g0050' => 'nta', 'Nitab4.5_0000913g0070' => 'nta', 'Nitab4.5_0001332g0040' => 'nta', 'Nitab4.5_0001771g0050' => 'nta', 'Nitab4.5_0001918g0050' => 'nta', 'Nitab4.5_0002686g0030' => 'nta', 'Nitab4.5_0003156g0020' => 'nta', 'Nitab4.5_0003383g0040' => 'nta', 'Nitab4.5_0003918g0010' => 'nta', 'Nitab4.5_0006760g0010' => 'nta', 'Nn1g05981' => 'nnu', 'Nn1g06288' => 'nnu', 'Nn3g16371' => 'nnu', 'Nn3g16786' => 'nnu', 'Nn4g22232' => 'nnu', 'Oeu005144.1' => 'oeu', 'Oeu005145.1' => 'oeu', 'Oeu011348.1' => 'oeu', 'Oeu016415.1' => 'oeu', 'Oeu023501.1' => 'oeu', 'Oeu044473.1' => 'oeu', 'Oeu048892.2' => 'oeu', 'Os01g0549200' => 'osa', 'Os02g0469300' => 'osa', 'Os04g0311100' => 'osa', 'Os06g0474900' => 'osa', 'Os10g0181700' => 'osa', 'Os11g0454800' => 'osa', 'Peaxi162Scf00037g00714' => 'pax', 'Peaxi162Scf00084g01217' => 'pax', 'Peaxi162Scf00257g00217' => 'pax', 'Peaxi162Scf00516g00215' => 'pax', 'Peaxi162Scf00689g00123' => 'pax', 'PGR044G2719' => 'pgr', 'PGR083G1360' => 'pgr', 'PGR102G2849' => 'pgr', 'PGR119G2534' => 'pgr', 'PGSC0003DMG400003538' => 'stu', 'PGSC0003DMG400028138' => 'stu', 'PGSC0003DMG400031732' => 'stu', 'PGSC0003DMG400038165' => 'stu', 'Phvul.002G284600' => 'pvu', 'Phvul.003G258200' => 'pvu', 'Phvul.009G176500' => 'pvu', 'Potri.003G167201' => 'ptr', 'Potri.005G118400' => 'ptr', 'Potri.012G089000' => 'ptr', 'Potri.012G102800' => 'ptr', 'Potri.015G079400' => 'ptr', 'Potri.015G100900' => 'ptr', 'Pp3c14_9810' => 'ppa', 'Pp3c15_10450' => 'ppa', 'Pp3c20_19150' => 'ppa', 'Pp3c23_12740' => 'ppa', 'Pp3c23_6310' => 'ppa', 'Pp3c24_3720' => 'ppa', 'Pp3c27_2580' => 'ppa', 'Pp3c9_8990' => 'ppa', 'PRCOL_00002854' => 'pco', 'Prupe.1G221200' => 'ppe', 'Prupe.3G289000' => 'ppe', 'Prupe.5G147000' => 'ppe', 'Prupe.6G157300' => 'ppe', 'Prupe.7G163400' => 'ppe', 'Psat0s2177g0040' => 'psa', 'Psat3g174760' => 'psa', 'Psat3g192160' => 'psa', 'Psat4g058520' => 'psa', 'Psat4g096840' => 'psa', 'Psat7g037320' => 'psa', 'PSO017G1274' => 'pso', 'PSO017G5166' => 'pso', 'PSO063G4558' => 'pso', 'PSO170G4458' => 'pso', 'PSO170G5005' => 'pso', 'PSO210G6156' => 'pso', 'PSO210G6635' => 'pso', 'PSO210G7397' => 'pso', 'PSO210G7700' => 'pso', 'PSO455G0035' => 'pso', 'PSO455G0180' => 'pso', 'PSO478G4515' => 'pso', 'PSO832G1305' => 'pso', 'PSO832G3489' => 'pso', 'QL02p075247' => 'qlo', 'QL03p051148' => 'qlo', 'QL05p010313' => 'qlo', 'QL06p034627' => 'qlo', 'QL10p001889' => 'qlo', 'QL10p010846' => 'qlo', 'RcHm_v2.0_Chr1g0350621' => 'rch', 'RcHm_v2.0_Chr1g0350641' => 'rch', 'RcHm_v2.0_Chr2g0092891' => 'rch', 'RcHm_v2.0_Chr2g0100251' => 'rch', 'RcHm_v2.0_Chr2g0158661' => 'rch', 'RcHm_v2.0_Chr2g0172741' => 'rch', 'RcHm_v2.0_Chr4g0429571' => 'rch', 'RcHm_v2.0_Chr5g0042471' => 'rch', 'RcHm_v2.0_Chr7g0189451' => 'rch', 'Rhsim08G0052000' => 'rsi', 'Rhsim08G0174400' => 'rsi', 'Rhsim08G0193200' => 'rsi', 'Rhsim10G0214800' => 'rsi', 'Rhsim10G0214900' => 'rsi', 'Rhsim10G0215000' => 'rsi', 'Rhsim12G0022900' => 'rsi', 'Rhsim12G0177500' => 'rsi', 'Rhsim12G0177700' => 'rsi', 'Sabra03G0122600' => 'sbr', 'Sabra05G0097400' => 'sbr', 'Sabra12G0064100' => 'sbr', 'Sabra15G0121300' => 'sbr', 'SalBow2G0642' => 'sbo', 'SalBow5G2667' => 'sbo', 'SalBow5G4873' => 'sbo', 'SalBow8G2395' => 'sbo', 'Sc03g0003290' => 'sci', 'Sc10g0010130' => 'sci', 'Sc22g0003650' => 'sci', 'Sed0001603' => 'sed', 'Sed0004259' => 'sed', 'Sed0006789' => 'sed', 'Sed0011838' => 'sed', 'Sed0012964' => 'sed', 'Sed0016383' => 'sed', 'Sed0019010' => 'sed', 'Sed0020188' => 'sed', 'SEGI_04702' => 'sgi', 'SEGI_17231' => 'sgi', 'SEGI_18877' => 'sgi', 'SEGI_25196' => 'sgi', 'SEGI_25515' => 'sgi', 'SEGI_28445' => 'sgi', 'SEGI_37452' => 'sgi', 'SGA_v2.0_scaffold188G40336' => 'sas', 'SGA_v2.0_scaffold228G43247' => 'sas', 'SGA_v2.0_scaffold280G46853' => 'sas', 'SGA_v2.0_scaffold34G13808' => 'sas', 'SGA_v2.0_scaffold40G15576' => 'sas', 'SGA_v2.0_scaffold611G53188' => 'sas', 'SGA_v2.0_scaffold78G25461' => 'sas', 'SGA_v2.0_scaffold90G27888' => 'sas', 'SHI08601' => 'shi', 'SHI08606' => 'shi', 'SHI17117' => 'shi', 'SHI17119' => 'shi', 'SMO118G0201' => 'smo', 'SMO169G0247' => 'smo', 'SMO176G0006' => 'smo', 'SMO176G0015' => 'smo', 'SMO202G0006' => 'smo', 'SMO240G0050' => 'smo', 'SMO286G0009' => 'smo', 'SMO338G0033' => 'smo', 'SMO356G0533' => 'smo', 'SMO364G0382' => 'smo', 'SMO367G0166' => 'smo', 'SMO367G1098' => 'smo', 'Solyc01g009920.3' => 'sly', 'Solyc01g099300.3' => 'sly', 'Solyc02g084700.3' => 'sly', 'Solyc03g097520.3' => 'sly', 'Solyc06g071580.3' => 'sly', 'Solyc10g081760.3' => 'sly', 'Sopen01g005480' => 'spe', 'Sopen01g042850' => 'spe', 'Sopen02g029370' => 'spe', 'Sopen03g028280' => 'spe', 'Sopen06g027870' => 'spe', 'Sopen10g032270' => 'spe', 'Sp5g18180' => 'spa', 'Sp6g12880' => 'spa', 'Sp6g30850' => 'spa', 'Sp7g22960' => 'spa', 'Sp7g34010' => 'spa', 'SpUn1326_0010' => 'spa', 'TAR371G0242' => 'tar', 'TAR622G0638' => 'tar', 'TAR628G1548' => 'tar', 'TAR629G1079' => 'tar', 'TAR629G3413' => 'tar', 'THA.LOC104804249' => 'tha', 'THA.LOC104808315' => 'tha', 'THA.LOC104809238' => 'tha', 'THA.LOC104825484' => 'tha', 'Thecc.01G025500' => 'tca', 'Thecc.03G015800' => 'tca', 'Thecc.03G018000' => 'tca', 'Thecc.03G134800' => 'tca', 'Thecc.04G014700' => 'tca', 'Thhalv10006991m.g' => 'esa', 'Thhalv10012707m.g' => 'esa', 'Thhalv10015739m.g' => 'esa', 'Thhalv10024553m.g' => 'esa', 'Thhalv10024673m.g' => 'esa', 'Thhalv10029187m.g' => 'esa', 'TPR.G12971' => 'tpr', 'TPR.G29396' => 'tpr', 'TPR.G33376' => 'tpr', 'TPR.G35508' => 'tpr', 'TPR.G35516' => 'tpr', 'TPR.G37317' => 'tpr', 'TPR.G37389' => 'tpr', 'TPR.G37523' => 'tpr', 'TPR.G559' => 'tpr', 'TWI14G0070' => 'twi', 'TWI14G0729' => 'twi', 'TWI18G0596' => 'twi', 'TWI39G0780' => 'twi', 'TWI39G0850' => 'twi', 'TWI73G1052' => 'twi', 'unitig_52.g17485' => 'ugi', 'unitig_61.g26355' => 'ugi', 'vmacro01040' => 'vma', 'vmacro16731' => 'vma', 'vmacro18270' => 'vma', 'vmacro19142' => 'vma', 'vmacro19407' => 'vma', 'vmacro19408' => 'vma', 'vmacro21899' => 'vma', 'vmacro21900' => 'vma', 'vmacro21901' => 'vma', 'VMungo0251G0490' => 'vmu', 'VMungo0251G1748' => 'vmu', 'VMungo1309G0421' => 'vmu', 'Zm00001eb086500' => 'zma', 'Zm00001eb150680' => 'zma', 'Zm00001eb162330' => 'zma', 'Zm00001eb203130' => 'zma', 'Zm00001eb369480' => 'zma', 'Zm00001eb382340' => 'zma', 'Zm00001eb416360' => 'zma' ), 'gf_id' => 'HOM05D000902', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000902' ), 'data_identifier' => 'HOM05D000902', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000902', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '663', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02470' => 'bna', 'A01p16260' => 'bna', 'A02p01680' => 'bna', 'A03p16600' => 'bna', 'A03p55660' => 'bna', 'A03p64160' => 'bna', 'A03p64170' => 'bna', 'A08p31900' => 'bna', 'A09p59530' => 'bna', 'A10p08230' => 'bna', 'A10p25090' => 'bna', 'Aa31LG3G7100' => 'aar', 'Aa31LG3G7110' => 'aar', 'Aa31LG6G13160' => 'aar', 'Aa31LG7G10770' => 'aar', 'Aa31LG7G3830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2723' => 'aag', 'Actinidia08045' => 'ach', 'Actinidia08888' => 'ach', 'Actinidia18333' => 'ach', 'Actinidia19334' => 'ach', 'Actinidia25552' => 'ach', 'Actinidia26089' => 'ach', 'Actinidia30615' => 'ach', 'Actinidia30616' => 'ach', 'Actinidia33083' => 'ach', 'Actinidia35762' => 'ach', 'Ah.02g110620' => 'amhyb', 'Ah.11g046390' => 'amhyb', 'AL1G31670' => 'aly', 'AL6G23730' => 'aly', 'AL7G14740' => 'aly', 'AL7G14750' => 'aly', 'AL7G14760' => 'aly', 'AL7G28220' => 'aly', 'AL8G24940' => 'aly', 'Aqoxy3G01665' => 'aox', 'Aqoxy3G02853' => 'aox', 'Aqoxy5G01513' => 'aox', 'Aqoxy5G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8SKA4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ75LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKDA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0LJZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7REX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZP4YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWX7I5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2QKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS0L9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPCD8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q161UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC7XCF' => 'arhy', 'AT1G19100' => 'ath', 'AT4G24970' => 'ath', 'AT4G36270' => 'ath', 'AT4G36280' => 'ath', 'AT4G36290' => 'ath', 'AT5G13130' => 'ath', 'AT5G50780' => 'ath', 'ATR0582G266' => 'atr', 'ATR0661G195' => 'atr', 'ATR1152G031' => 'atr', 'Atru.chr11.2382' => 'acertr', 'Atru.chr12.2337' => 'acertr', 'Atru.chr3.744' => 'acertr', 'Atru.chr6.1870' => 'acertr', 'Atru.chr9.2515' => 'acertr', 'AUR62004120' => 'cqu', 'AUR62005667' => 'cqu', 'AUR62007634' => 'cqu', 'AUR62008186' => 'cqu', 'AUR62008187' => 'cqu', 'AUR62008188' => 'cqu', 'AUR62027954' => 'cqu', 'AUR62028766' => 'cqu', 'AUR62028767' => 'cqu', 'AUR62028768' => 'cqu', 'AUR62028886' => 'cqu', 'AUR62029563' => 'cqu', 'AUR62038832' => 'cqu', 'BcaB01g04149' => 'bca', 'BcaB03g12940' => 'bca', 'BcaB03g13090' => 'bca', 'BcaB03g14466' => 'bca', 'BcaB05g24035' => 'bca', 'BcaC01g06050' => 'bca', 'BcaC04g19148' => 'bca', 'BcaC04g20761' => 'bca', 'BcaC06g32845' => 'bca', 'BcaC07g41274' => 'bca', 'BcaC09g50827' => 'bca', 'BcaNung00741' => 'bca', 'BcaNung00742' => 'bca', 'BcaNung01859' => 'bca', 'BcaNung03985' => 'bca', 'BcaNung03989' => 'bca', 'BcaNung05661' => 'bca', 'BolC1t00257H' => 'bol', 'BolC1t01956H' => 'bol', 'BolC2t06534H' => 'bol', 'BolC3t14334H' => 'bol', 'BolC5t30451H' => 'bol', 'BolC7t45880H' => 'bol', 'BolC7t46586H' => 'bol', 'BolC8t49301H' => 'bol', 'BolC8t51837H' => 'bol', 'BolC9t56822H' => 'bol', 'BolC9t59235H' => 'bol', 'BraA01t00234Z' => 'bra', 'BraA01t01563Z' => 'bra', 'BraA02t05147Z' => 'bra', 'BraA03t10947Z' => 'bra', 'BraA03t14633Z' => 'bra', 'BraA08t35112Z' => 'bra', 'BraA09t41330Z' => 'bra', 'BraA10t44570Z' => 'bra', 'C01p02670' => 'bna', 'C01p20260' => 'bna', 'C02p05890' => 'bna', 'C03p19530' => 'bna', 'C05p17470' => 'bna', 'C07p53900' => 'bna', 'C07p61630' => 'bna', 'C08p16800' => 'bna', 'C08p42810' => 'bna', 'C09p39480' => 'bna', 'C09p63980' => 'bna', 'CAN.G1001.7' => 'can', 'CAN.G1034.55' => 'can', 'CAN.G143.7' => 'can', 'CAN.G3340.1' => 'can', 'CAN.G358.19' => 'can', 'CAN.G373.2' => 'can', 'CAN.G674.16' => 'can', 'CAN.G674.17' => 'can', 'CAN.G674.18' => 'can', 'CAN.G732.2' => 'can', 'CAN.G732.3' => 'can', 'CAN.G993.39' => 'can', 'CANSAT01G2052' => 'cansat', 'CANSAT80G0070' => 'cansat', 'CANSAT80G0483' => 'cansat', 'CANSAT80G0625' => 'cansat', 'CARHR019690' => 'chi', 'CARHR080280' => 'chi', 'CARHR152750' => 'chi', 'CARHR152760' => 'chi', 'CARHR152770' => 'chi', 'CARHR200340' => 'chi', 'CARHR232370' => 'chi', 'CARHR244670' => 'chi', 'CARHR244680' => 'chi', 'CARHR257520' => 'chi', 'Carub.0001s1872' => 'cru', 'Carub.0006s1130' => 'cru', 'Carub.0007s0396' => 'cru', 'Carub.0007s0397' => 'cru', 'Carub.0007s1608' => 'cru', 'Carub.0008s1068' => 'cru', 'Carub.0008s1077' => 'cru', 'Ca_16158_v3' => 'car', 'Ca_17571_v3' => 'car', 'Ca_21936_v3' => 'car', 'Ca_22350_v3' => 'car', 'CBR_g22445' => 'cbr', 'CBR_g26290' => 'cbr', 'Cc04_g09610' => 'ccan', 'Cc04_g12280' => 'ccan', 'Cc07_g10230' => 'ccan', 'CDE02G0093' => 'cde', 'CDE02G0701' => 'cde', 'CDE04G1050' => 'cde', 'CDE05G1833' => 'cde', 'CDE05G3058' => 'cde', 'CDE05G3380' => 'cde', 'CDE06G0536' => 'cde', 'Cfa006923' => 'cfa', 'Cfa009402' => 'cfa', 'Cfa018751' => 'cfa', 'Cfa019164' => 'cfa', 'Cfa022935' => 'cfa', 'Ciclev10019081m.g' => 'ccl', 'Ciclev10025076m.g' => 'ccl', 'Ciclev10030712m.g' => 'ccl', 'Ciclev10033760m.g' => 'ccl', 'CiPaw.05G105600' => 'cil', 'CiPaw.08G136700' => 'cil', 'CiPaw.11G003900' => 'cil', 'CiPaw.11G023700' => 'cil', 'CiPaw.12G003700' => 'cil', 'ClCG06G017100' => 'cla', 'ClCG06G018110' => 'cla', 'ClCG07G008800' => 'cla', 'ClCG07G015330' => 'cla', 'COL.COLO4_13698' => 'col', 'COL.COLO4_16659' => 'col', 'COL.COLO4_21986' => 'col', 'COL.COLO4_24049' => 'col', 'COL.COLO4_29061' => 'col', 'COL.COLO4_29075' => 'col', 'COL.COLO4_30094' => 'col', 'Cpa.g.c33689' => 'cpa', 'Cpa.g.sc108.39' => 'cpa', 'Cpa.g.sc108.41' => 'cpa', 'Cpa.g.sc1163.1' => 'cpa', 'Cpa.g.sc4.155' => 'cpa', 'Cpa.g.sc6.194' => 'cpa', 'CsaV3_1G000340' => 'csa', 'CsaV3_1G001400' => 'csa', 'CsaV3_4G002220' => 'csa', 'CsaV3_4G005370' => 'csa', 'CSS0007487' => 'camsi', 'CSS0008066' => 'camsi', 'CSS0009120' => 'camsi', 'CSS0015512' => 'camsi', 'CSS0022409' => 'camsi', 'CSS0025358' => 'camsi', 'CSS0044547' => 'camsi', 'DCAR_013057' => 'dca', 'DCAR_015058' => 'dca', 'DCAR_016027' => 'dca', 'DCAR_017327' => 'dca', 'DCAR_020743' => 'dca', 'DCAR_026157' => 'dca', 'DCAR_032339' => 'dca', 'DCAR_032340' => 'dca', 'Dinv11200' => 'din', 'Dinv11201' => 'din', 'Dinv20631' => 'din', 'Dinv23182' => 'din', 'Dinv33466' => 'din', 'Dinv33583' => 'din', 'Dinv38565' => 'din', 'Duzib068G0200' => 'dzi', 'Duzib147G0132' => 'dzi', 'Duzib147G0635' => 'dzi', 'Duzib205G1670' => 'dzi', 'Duzib251G0606' => 'dzi', 'ECA232G3336' => 'eca', 'ECA232G3763' => 'eca', 'ECA232G4845' => 'eca', 'ECA234G1607' => 'eca', 'ECA246G0932' => 'eca', 'ECA247G0781' => 'eca', 'ECA247G1932' => 'eca', 'ECA247G2079' => 'eca', 'ECA247G3338' => 'eca', 'ECA247G4115' => 'eca', 'EL10Ac3g06552' => 'bvu', 'EL10Ac5g10721' => 'bvu', 'EL10Ac5g10722' => 'bvu', 'EL10Ac5g10723' => 'bvu', 'EL10Ac5g11361' => 'bvu', 'EL10Ac6g13553' => 'bvu', 'EL10As8g23872' => 'bvu', 'Eucgr.B00250' => 'egr', 'Eucgr.B00251' => 'egr', 'Eucgr.B03533' => 'egr', 'Eucgr.I02381' => 'egr', 'Eucgr.K02700' => 'egr', 'FAN02G0174' => 'fan', 'FAN02G3146' => 'fan', 'FAN04G1672' => 'fan', 'FAN04G2273' => 'fan', 'FAN05G2791' => 'fan', 'FAN05G4035' => 'fan', 'FAN07G0834' => 'fan', 'FAN08G1198' => 'fan', 'FAN09G4182' => 'fan', 'FAN12G0496' => 'fan', 'FAN13G1027' => 'fan', 'FAN13G2951' => 'fan', 'FAN14G0705' => 'fan', 'FAN14G0720' => 'fan', 'FAN17G0201' => 'fan', 'FAN17G2665' => 'fan', 'FAN18G1456' => 'fan', 'FAN18G1525' => 'fan', 'FAN18G3500' => 'fan', 'FAN28G2670' => 'fan', 'FvH4_1g12391' => 'fve', 'FvH4_4g23220' => 'fve', 'FvH4_5g08810' => 'fve', 'FvH4_5g28960' => 'fve', 'FvH4_6g42820' => 'fve', 'FvH4_6g51110' => 'fve', 'Glyma.02G051802' => 'gma', 'Glyma.04G185300' => 'gma', 'Glyma.05G202900' => 'gma', 'Glyma.08G010300' => 'gma', 'Glyma.16G131900' => 'gma', 'Glyma.17G087900' => 'gma', 'Gohir.A07G048600' => 'ghi', 'Gohir.A11G179000' => 'ghi', 'Gohir.A12G140900' => 'ghi', 'Gohir.A12G140950' => 'ghi', 'Gohir.A12G191700' => 'ghi', 'Gohir.A13G086300' => 'ghi', 'Gohir.D07G052900' => 'ghi', 'Gohir.D11G186600' => 'ghi', 'Gohir.D12G145575' => 'ghi', 'Gohir.D12G145650' => 'ghi', 'Gohir.D12G145725' => 'ghi', 'Gohir.D12G194050' => 'ghi', 'Gohir.D13G091800' => 'ghi', 'Gorai.001G055900' => 'gra', 'Gorai.007G198400' => 'gra', 'Gorai.008G157000' => 'gra', 'Gorai.008G157100' => 'gra', 'Gorai.008G208700' => 'gra', 'Gorai.010G138700' => 'gra', 'GSVIVG01000977001' => 'vvi', 'GSVIVG01007708001' => 'vvi', 'GSVIVG01008587001' => 'vvi', 'GSVIVG01018849001' => 'vvi', 'GSVIVG01032432001' => 'vvi', 'HanXRQChr02g0034131' => 'han', 'HanXRQChr02g0035981' => 'han', 'HanXRQChr02g0035991' => 'han', 'HanXRQChr05g0155611' => 'han', 'HanXRQChr05g0155621' => 'han', 'HanXRQChr08g0236501' => 'han', 'HanXRQChr09g0261321' => 'han', 'HanXRQChr09g0272081' => 'han', 'HanXRQChr10g0310741' => 'han', 'HanXRQChr11g0325591' => 'han', 'HanXRQChr12g0385691' => 'han', 'HanXRQChr13g0387801' => 'han', 'HanXRQChr15g0463011' => 'han', 'Haze_03826' => 'cav', 'Haze_03827' => 'cav', 'Haze_07183' => 'cav', 'Haze_07537' => 'cav', 'Haze_07539' => 'cav', 'Haze_12461' => 'cav', 'Haze_16115' => 'cav', 'Haze_16808' => 'cav', 'Haze_18531' => 'cav', 'Hma1.2p1_0046F.1_g026700' => 'hma', 'Hma1.2p1_0046F.1_g026710' => 'hma', 'Hma1.2p1_0168F.1_g074340' => 'hma', 'Hma1.2p1_0266F.1_g107030' => 'hma', 'Hma1.2p1_0266F.1_g107060' => 'hma', 'Hma1.2p1_0275F.1_g110510' => 'hma', 'Hma1.2p1_0592F.1_g185490' => 'hma', 'Hma1.2p1_0592F.1_g185500' => 'hma', 'Hma1.2p1_0592F.1_g185510' => 'hma', 'Hma1.2p1_0592F.1_g185520' => 'hma', 'Hma1.2p1_0592F.1_g185530' => 'hma', 'Hma1.2p1_0818F.1_g223450' => 'hma', 'HPP92_009708' => 'vpl', 'HPP92_009793' => 'vpl', 'HPP92_009796' => 'vpl', 'HPP92_009797' => 'vpl', 'HPP92_014940' => 'vpl', 'HPP92_014988' => 'vpl', 'Hund02463' => 'sun', 'Hund02760' => 'sun', 'Hund05071' => 'sun', 'Hund10108' => 'sun', 'Hund11204' => 'sun', 'Hund14016' => 'sun', 'Hund16464' => 'sun', 'Lalb_Chr09g0333391' => 'lal', 'Lalb_Chr11g0070461' => 'lal', 'Lalb_Chr12g0201671' => 'lal', 'Lalb_Chr13g0297161' => 'lal', 'Lj1g0002823' => 'lja', 'Lj3C1074T6' => 'lonja', 'Lj4A212T28' => 'lonja', 'Lj4g0005516' => 'lja', 'Lj4g0013705' => 'lja', 'Lj4g0027865' => 'lja', 'Lj5C92G16' => 'lonja', 'Lj5C92T12' => 'lonja', 'Lj7C596T3' => 'lonja', 'Lj9A446G59' => 'lonja', 'Lj9A482G21' => 'lonja', 'Lsat_1_v5_gn_1_28261' => 'lsa', 'Lsat_1_v5_gn_1_28281' => 'lsa', 'Lsat_1_v5_gn_1_32721' => 'lsa', 'Lsat_1_v5_gn_4_151760' => 'lsa', 'Lsat_1_v5_gn_4_2120' => 'lsa', 'Lsat_1_v5_gn_4_75761' => 'lsa', 'Lsat_1_v5_gn_5_10920' => 'lsa', 'Manes.02G099900' => 'mes', 'Manes.11G096200' => 'mes', 'Manes.12G007200' => 'mes', 'Manes.14G048300' => 'mes', 'Manes.17G114700' => 'mes', 'Mapoly0002s0070' => 'mpo', 'Mapoly0029s0099' => 'mpo', 'MBI07_g24742_MAGBIO' => 'mbi', 'MBI10_g27988_MAGBIO' => 'mbi', 'MBI11_g13057_MAGBIO' => 'mbi', 'MD02G1137200' => 'mdo', 'MD06G1137200' => 'mdo', 'MD07G1122300' => 'mdo', 'MD09G1078200' => 'mdo', 'MD13G1123700' => 'mdo', 'MD14G1151900' => 'mdo', 'MD17G1030900' => 'mdo', 'MD17G1068200' => 'mdo', 'MD17G1068600' => 'mdo', 'Medtr3g077540' => 'mtr', 'Medtr4g105530' => 'mtr', 'Medtr8g076580' => 'mtr', 'Medtr8g076590' => 'mtr', 'Medtr8g096410' => 'mtr', 'MELO3C016411.2' => 'cme', 'MELO3C017780.2' => 'cme', 'MELO3C022560.2' => 'cme', 'MELO3C026187.2' => 'cme', 'MELO3C026286.2' => 'cme', 'MELO3C032854.2' => 'cme', 'Migut.H02495' => 'egut', 'Migut.I00561' => 'egut', 'Migut.K01015' => 'egut', 'Migut.K01016' => 'egut', 'Migut.L00743' => 'egut', 'Migut.L00744' => 'egut', 'Migut.L00746' => 'egut', 'Migut.L00798' => 'egut', 'Migut.L00799' => 'egut', 'Migut.N02096' => 'egut', 'MSTRG.11259' => 'ama', 'MSTRG.23142' => 'ama', 'MSTRG.2499' => 'ama', 'Nitab4.5_0000003g0730' => 'nta', 'Nitab4.5_0000137g0020' => 'nta', 'Nitab4.5_0000721g0210' => 'nta', 'Nitab4.5_0000723g0050' => 'nta', 'Nitab4.5_0000913g0070' => 'nta', 'Nitab4.5_0001332g0040' => 'nta', 'Nitab4.5_0001771g0050' => 'nta', 'Nitab4.5_0001918g0050' => 'nta', 'Nitab4.5_0002686g0030' => 'nta', 'Nitab4.5_0003156g0020' => 'nta', 'Nitab4.5_0003383g0040' => 'nta', 'Nitab4.5_0003918g0010' => 'nta', 'Nitab4.5_0006760g0010' => 'nta', 'Nn1g05981' => 'nnu', 'Nn1g06288' => 'nnu', 'Nn3g16371' => 'nnu', 'Nn3g16786' => 'nnu', 'Nn4g22232' => 'nnu', 'Oeu005144.1' => 'oeu', 'Oeu005145.1' => 'oeu', 'Oeu011348.1' => 'oeu', 'Oeu016415.1' => 'oeu', 'Oeu023501.1' => 'oeu', 'Oeu044473.1' => 'oeu', 'Oeu048892.2' => 'oeu', 'Os01g0549200' => 'osa', 'Os02g0469300' => 'osa', 'Os04g0311100' => 'osa', 'Os06g0474900' => 'osa', 'Os10g0181700' => 'osa', 'Os11g0454800' => 'osa', 'Peaxi162Scf00037g00714' => 'pax', 'Peaxi162Scf00084g01217' => 'pax', 'Peaxi162Scf00257g00217' => 'pax', 'Peaxi162Scf00516g00215' => 'pax', 'Peaxi162Scf00689g00123' => 'pax', 'PGR044G2719' => 'pgr', 'PGR083G1360' => 'pgr', 'PGR102G2849' => 'pgr', 'PGR119G2534' => 'pgr', 'PGSC0003DMG400003538' => 'stu', 'PGSC0003DMG400028138' => 'stu', 'PGSC0003DMG400031732' => 'stu', 'PGSC0003DMG400038165' => 'stu', 'Phvul.002G284600' => 'pvu', 'Phvul.003G258200' => 'pvu', 'Phvul.009G176500' => 'pvu', 'Potri.003G167201' => 'ptr', 'Potri.005G118400' => 'ptr', 'Potri.012G089000' => 'ptr', 'Potri.012G102800' => 'ptr', 'Potri.015G079400' => 'ptr', 'Potri.015G100900' => 'ptr', 'Pp3c14_9810' => 'ppa', 'Pp3c15_10450' => 'ppa', 'Pp3c20_19150' => 'ppa', 'Pp3c23_12740' => 'ppa', 'Pp3c23_6310' => 'ppa', 'Pp3c24_3720' => 'ppa', 'Pp3c27_2580' => 'ppa', 'Pp3c9_8990' => 'ppa', 'PRCOL_00002854' => 'pco', 'Prupe.1G221200' => 'ppe', 'Prupe.3G289000' => 'ppe', 'Prupe.5G147000' => 'ppe', 'Prupe.6G157300' => 'ppe', 'Prupe.7G163400' => 'ppe', 'Psat0s2177g0040' => 'psa', 'Psat3g174760' => 'psa', 'Psat3g192160' => 'psa', 'Psat4g058520' => 'psa', 'Psat4g096840' => 'psa', 'Psat7g037320' => 'psa', 'PSO017G1274' => 'pso', 'PSO017G5166' => 'pso', 'PSO063G4558' => 'pso', 'PSO170G4458' => 'pso', 'PSO170G5005' => 'pso', 'PSO210G6156' => 'pso', 'PSO210G6635' => 'pso', 'PSO210G7397' => 'pso', 'PSO210G7700' => 'pso', 'PSO455G0035' => 'pso', 'PSO455G0180' => 'pso', 'PSO478G4515' => 'pso', 'PSO832G1305' => 'pso', 'PSO832G3489' => 'pso', 'QL02p075247' => 'qlo', 'QL03p051148' => 'qlo', 'QL05p010313' => 'qlo', 'QL06p034627' => 'qlo', 'QL10p001889' => 'qlo', 'QL10p010846' => 'qlo', 'RcHm_v2.0_Chr1g0350621' => 'rch', 'RcHm_v2.0_Chr1g0350641' => 'rch', 'RcHm_v2.0_Chr2g0092891' => 'rch', 'RcHm_v2.0_Chr2g0100251' => 'rch', 'RcHm_v2.0_Chr2g0158661' => 'rch', 'RcHm_v2.0_Chr2g0172741' => 'rch', 'RcHm_v2.0_Chr4g0429571' => 'rch', 'RcHm_v2.0_Chr5g0042471' => 'rch', 'RcHm_v2.0_Chr7g0189451' => 'rch', 'Rhsim08G0052000' => 'rsi', 'Rhsim08G0174400' => 'rsi', 'Rhsim08G0193200' => 'rsi', 'Rhsim10G0214800' => 'rsi', 'Rhsim10G0214900' => 'rsi', 'Rhsim10G0215000' => 'rsi', 'Rhsim12G0022900' => 'rsi', 'Rhsim12G0177500' => 'rsi', 'Rhsim12G0177700' => 'rsi', 'Sabra03G0122600' => 'sbr', 'Sabra05G0097400' => 'sbr', 'Sabra12G0064100' => 'sbr', 'Sabra15G0121300' => 'sbr', 'SalBow2G0642' => 'sbo', 'SalBow5G2667' => 'sbo', 'SalBow5G4873' => 'sbo', 'SalBow8G2395' => 'sbo', 'Sc03g0003290' => 'sci', 'Sc10g0010130' => 'sci', 'Sc22g0003650' => 'sci', 'Sed0001603' => 'sed', 'Sed0004259' => 'sed', 'Sed0006789' => 'sed', 'Sed0011838' => 'sed', 'Sed0012964' => 'sed', 'Sed0016383' => 'sed', 'Sed0019010' => 'sed', 'Sed0020188' => 'sed', 'SEGI_04702' => 'sgi', 'SEGI_17231' => 'sgi', 'SEGI_18877' => 'sgi', 'SEGI_25196' => 'sgi', 'SEGI_25515' => 'sgi', 'SEGI_28445' => 'sgi', 'SEGI_37452' => 'sgi', 'SGA_v2.0_scaffold188G40336' => 'sas', 'SGA_v2.0_scaffold228G43247' => 'sas', 'SGA_v2.0_scaffold280G46853' => 'sas', 'SGA_v2.0_scaffold34G13808' => 'sas', 'SGA_v2.0_scaffold40G15576' => 'sas', 'SGA_v2.0_scaffold611G53188' => 'sas', 'SGA_v2.0_scaffold78G25461' => 'sas', 'SGA_v2.0_scaffold90G27888' => 'sas', 'SHI08601' => 'shi', 'SHI08606' => 'shi', 'SHI17117' => 'shi', 'SHI17119' => 'shi', 'SMO118G0201' => 'smo', 'SMO169G0247' => 'smo', 'SMO176G0006' => 'smo', 'SMO176G0015' => 'smo', 'SMO202G0006' => 'smo', 'SMO240G0050' => 'smo', 'SMO286G0009' => 'smo', 'SMO338G0033' => 'smo', 'SMO356G0533' => 'smo', 'SMO364G0382' => 'smo', 'SMO367G0166' => 'smo', 'SMO367G1098' => 'smo', 'Solyc01g009920.3' => 'sly', 'Solyc01g099300.3' => 'sly', 'Solyc02g084700.3' => 'sly', 'Solyc03g097520.3' => 'sly', 'Solyc06g071580.3' => 'sly', 'Solyc10g081760.3' => 'sly', 'Sopen01g005480' => 'spe', 'Sopen01g042850' => 'spe', 'Sopen02g029370' => 'spe', 'Sopen03g028280' => 'spe', 'Sopen06g027870' => 'spe', 'Sopen10g032270' => 'spe', 'Sp5g18180' => 'spa', 'Sp6g12880' => 'spa', 'Sp6g30850' => 'spa', 'Sp7g22960' => 'spa', 'Sp7g34010' => 'spa', 'SpUn1326_0010' => 'spa', 'TAR371G0242' => 'tar', 'TAR622G0638' => 'tar', 'TAR628G1548' => 'tar', 'TAR629G1079' => 'tar', 'TAR629G3413' => 'tar', 'THA.LOC104804249' => 'tha', 'THA.LOC104808315' => 'tha', 'THA.LOC104809238' => 'tha', 'THA.LOC104825484' => 'tha', 'Thecc.01G025500' => 'tca', 'Thecc.03G015800' => 'tca', 'Thecc.03G018000' => 'tca', 'Thecc.03G134800' => 'tca', 'Thecc.04G014700' => 'tca', 'Thhalv10006991m.g' => 'esa', 'Thhalv10012707m.g' => 'esa', 'Thhalv10015739m.g' => 'esa', 'Thhalv10024553m.g' => 'esa', 'Thhalv10024673m.g' => 'esa', 'Thhalv10029187m.g' => 'esa', 'TPR.G12971' => 'tpr', 'TPR.G29396' => 'tpr', 'TPR.G33376' => 'tpr', 'TPR.G35508' => 'tpr', 'TPR.G35516' => 'tpr', 'TPR.G37317' => 'tpr', 'TPR.G37389' => 'tpr', 'TPR.G37523' => 'tpr', 'TPR.G559' => 'tpr', 'TWI14G0070' => 'twi', 'TWI14G0729' => 'twi', 'TWI18G0596' => 'twi', 'TWI39G0780' => 'twi', 'TWI39G0850' => 'twi', 'TWI73G1052' => 'twi', 'unitig_52.g17485' => 'ugi', 'unitig_61.g26355' => 'ugi', 'vmacro01040' => 'vma', 'vmacro16731' => 'vma', 'vmacro18270' => 'vma', 'vmacro19142' => 'vma', 'vmacro19407' => 'vma', 'vmacro19408' => 'vma', 'vmacro21899' => 'vma', 'vmacro21900' => 'vma', 'vmacro21901' => 'vma', 'VMungo0251G0490' => 'vmu', 'VMungo0251G1748' => 'vmu', 'VMungo1309G0421' => 'vmu', 'Zm00001eb086500' => 'zma', 'Zm00001eb150680' => 'zma', 'Zm00001eb162330' => 'zma', 'Zm00001eb203130' => 'zma', 'Zm00001eb369480' => 'zma', 'Zm00001eb382340' => 'zma', 'Zm00001eb416360' => 'zma' ) $gf_id = 'HOM05D000902' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000902' ) $data_identifier = 'HOM05D000902' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 13, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 10, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 6, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 9, 'hma' => (int) 12, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 4, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 6, 'ppa' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 6, 'rch' => (int) 9, 'rsi' => (int) 9, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 12, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 3, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416360' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000902', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '663', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02470' => 'bna', 'A01p16260' => 'bna', 'A02p01680' => 'bna', 'A03p16600' => 'bna', 'A03p55660' => 'bna', 'A03p64160' => 'bna', 'A03p64170' => 'bna', 'A08p31900' => 'bna', 'A09p59530' => 'bna', 'A10p08230' => 'bna', 'A10p25090' => 'bna', 'Aa31LG3G7100' => 'aar', 'Aa31LG3G7110' => 'aar', 'Aa31LG6G13160' => 'aar', 'Aa31LG7G10770' => 'aar', 'Aa31LG7G3830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2723' => 'aag', 'Actinidia08045' => 'ach', 'Actinidia08888' => 'ach', 'Actinidia18333' => 'ach', 'Actinidia19334' => 'ach', 'Actinidia25552' => 'ach', 'Actinidia26089' => 'ach', 'Actinidia30615' => 'ach', 'Actinidia30616' => 'ach', 'Actinidia33083' => 'ach', 'Actinidia35762' => 'ach', 'Ah.02g110620' => 'amhyb', 'Ah.11g046390' => 'amhyb', 'AL1G31670' => 'aly', 'AL6G23730' => 'aly', 'AL7G14740' => 'aly', 'AL7G14750' => 'aly', 'AL7G14760' => 'aly', 'AL7G28220' => 'aly', 'AL8G24940' => 'aly', 'Aqoxy3G01665' => 'aox', 'Aqoxy3G02853' => 'aox', 'Aqoxy5G01513' => 'aox', 'Aqoxy5G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8SKA4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ75LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKDA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0LJZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7REX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZP4YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWX7I5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2QKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS0L9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPCD8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q161UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC7XCF' => 'arhy', 'AT1G19100' => 'ath', 'AT4G24970' => 'ath', 'AT4G36270' => 'ath', 'AT4G36280' => 'ath', 'AT4G36290' => 'ath', 'AT5G13130' => 'ath', 'AT5G50780' => 'ath', 'ATR0582G266' => 'atr', 'ATR0661G195' => 'atr', 'ATR1152G031' => 'atr', 'Atru.chr11.2382' => 'acertr', 'Atru.chr12.2337' => 'acertr', 'Atru.chr3.744' => 'acertr', 'Atru.chr6.1870' => 'acertr', 'Atru.chr9.2515' => 'acertr', 'AUR62004120' => 'cqu', 'AUR62005667' => 'cqu', 'AUR62007634' => 'cqu', 'AUR62008186' => 'cqu', 'AUR62008187' => 'cqu', 'AUR62008188' => 'cqu', 'AUR62027954' => 'cqu', 'AUR62028766' => 'cqu', 'AUR62028767' => 'cqu', 'AUR62028768' => 'cqu', 'AUR62028886' => 'cqu', 'AUR62029563' => 'cqu', 'AUR62038832' => 'cqu', 'BcaB01g04149' => 'bca', 'BcaB03g12940' => 'bca', 'BcaB03g13090' => 'bca', 'BcaB03g14466' => 'bca', 'BcaB05g24035' => 'bca', 'BcaC01g06050' => 'bca', 'BcaC04g19148' => 'bca', 'BcaC04g20761' => 'bca', 'BcaC06g32845' => 'bca', 'BcaC07g41274' => 'bca', 'BcaC09g50827' => 'bca', 'BcaNung00741' => 'bca', 'BcaNung00742' => 'bca', 'BcaNung01859' => 'bca', 'BcaNung03985' => 'bca', 'BcaNung03989' => 'bca', 'BcaNung05661' => 'bca', 'BolC1t00257H' => 'bol', 'BolC1t01956H' => 'bol', 'BolC2t06534H' => 'bol', 'BolC3t14334H' => 'bol', 'BolC5t30451H' => 'bol', 'BolC7t45880H' => 'bol', 'BolC7t46586H' => 'bol', 'BolC8t49301H' => 'bol', 'BolC8t51837H' => 'bol', 'BolC9t56822H' => 'bol', 'BolC9t59235H' => 'bol', 'BraA01t00234Z' => 'bra', 'BraA01t01563Z' => 'bra', 'BraA02t05147Z' => 'bra', 'BraA03t10947Z' => 'bra', 'BraA03t14633Z' => 'bra', 'BraA08t35112Z' => 'bra', 'BraA09t41330Z' => 'bra', 'BraA10t44570Z' => 'bra', 'C01p02670' => 'bna', 'C01p20260' => 'bna', 'C02p05890' => 'bna', 'C03p19530' => 'bna', 'C05p17470' => 'bna', 'C07p53900' => 'bna', 'C07p61630' => 'bna', 'C08p16800' => 'bna', 'C08p42810' => 'bna', 'C09p39480' => 'bna', 'C09p63980' => 'bna', 'CAN.G1001.7' => 'can', 'CAN.G1034.55' => 'can', 'CAN.G143.7' => 'can', 'CAN.G3340.1' => 'can', 'CAN.G358.19' => 'can', 'CAN.G373.2' => 'can', 'CAN.G674.16' => 'can', 'CAN.G674.17' => 'can', 'CAN.G674.18' => 'can', 'CAN.G732.2' => 'can', 'CAN.G732.3' => 'can', 'CAN.G993.39' => 'can', 'CANSAT01G2052' => 'cansat', 'CANSAT80G0070' => 'cansat', 'CANSAT80G0483' => 'cansat', 'CANSAT80G0625' => 'cansat', 'CARHR019690' => 'chi', 'CARHR080280' => 'chi', 'CARHR152750' => 'chi', 'CARHR152760' => 'chi', 'CARHR152770' => 'chi', 'CARHR200340' => 'chi', 'CARHR232370' => 'chi', 'CARHR244670' => 'chi', 'CARHR244680' => 'chi', 'CARHR257520' => 'chi', 'Carub.0001s1872' => 'cru', 'Carub.0006s1130' => 'cru', 'Carub.0007s0396' => 'cru', 'Carub.0007s0397' => 'cru', 'Carub.0007s1608' => 'cru', 'Carub.0008s1068' => 'cru', 'Carub.0008s1077' => 'cru', 'Ca_16158_v3' => 'car', 'Ca_17571_v3' => 'car', 'Ca_21936_v3' => 'car', 'Ca_22350_v3' => 'car', 'CBR_g22445' => 'cbr', 'CBR_g26290' => 'cbr', 'Cc04_g09610' => 'ccan', 'Cc04_g12280' => 'ccan', 'Cc07_g10230' => 'ccan', 'CDE02G0093' => 'cde', 'CDE02G0701' => 'cde', 'CDE04G1050' => 'cde', 'CDE05G1833' => 'cde', 'CDE05G3058' => 'cde', 'CDE05G3380' => 'cde', 'CDE06G0536' => 'cde', 'Cfa006923' => 'cfa', 'Cfa009402' => 'cfa', 'Cfa018751' => 'cfa', 'Cfa019164' => 'cfa', 'Cfa022935' => 'cfa', 'Ciclev10019081m.g' => 'ccl', 'Ciclev10025076m.g' => 'ccl', 'Ciclev10030712m.g' => 'ccl', 'Ciclev10033760m.g' => 'ccl', 'CiPaw.05G105600' => 'cil', 'CiPaw.08G136700' => 'cil', 'CiPaw.11G003900' => 'cil', 'CiPaw.11G023700' => 'cil', 'CiPaw.12G003700' => 'cil', 'ClCG06G017100' => 'cla', 'ClCG06G018110' => 'cla', 'ClCG07G008800' => 'cla', 'ClCG07G015330' => 'cla', 'COL.COLO4_13698' => 'col', 'COL.COLO4_16659' => 'col', 'COL.COLO4_21986' => 'col', 'COL.COLO4_24049' => 'col', 'COL.COLO4_29061' => 'col', 'COL.COLO4_29075' => 'col', 'COL.COLO4_30094' => 'col', 'Cpa.g.c33689' => 'cpa', 'Cpa.g.sc108.39' => 'cpa', 'Cpa.g.sc108.41' => 'cpa', 'Cpa.g.sc1163.1' => 'cpa', 'Cpa.g.sc4.155' => 'cpa', 'Cpa.g.sc6.194' => 'cpa', 'CsaV3_1G000340' => 'csa', 'CsaV3_1G001400' => 'csa', 'CsaV3_4G002220' => 'csa', 'CsaV3_4G005370' => 'csa', 'CSS0007487' => 'camsi', 'CSS0008066' => 'camsi', 'CSS0009120' => 'camsi', 'CSS0015512' => 'camsi', 'CSS0022409' => 'camsi', 'CSS0025358' => 'camsi', 'CSS0044547' => 'camsi', 'DCAR_013057' => 'dca', 'DCAR_015058' => 'dca', 'DCAR_016027' => 'dca', 'DCAR_017327' => 'dca', 'DCAR_020743' => 'dca', 'DCAR_026157' => 'dca', 'DCAR_032339' => 'dca', 'DCAR_032340' => 'dca', 'Dinv11200' => 'din', 'Dinv11201' => 'din', 'Dinv20631' => 'din', 'Dinv23182' => 'din', 'Dinv33466' => 'din', 'Dinv33583' => 'din', 'Dinv38565' => 'din', 'Duzib068G0200' => 'dzi', 'Duzib147G0132' => 'dzi', 'Duzib147G0635' => 'dzi', 'Duzib205G1670' => 'dzi', 'Duzib251G0606' => 'dzi', 'ECA232G3336' => 'eca', 'ECA232G3763' => 'eca', 'ECA232G4845' => 'eca', 'ECA234G1607' => 'eca', 'ECA246G0932' => 'eca', 'ECA247G0781' => 'eca', 'ECA247G1932' => 'eca', 'ECA247G2079' => 'eca', 'ECA247G3338' => 'eca', 'ECA247G4115' => 'eca', 'EL10Ac3g06552' => 'bvu', 'EL10Ac5g10721' => 'bvu', 'EL10Ac5g10722' => 'bvu', 'EL10Ac5g10723' => 'bvu', 'EL10Ac5g11361' => 'bvu', 'EL10Ac6g13553' => 'bvu', 'EL10As8g23872' => 'bvu', 'Eucgr.B00250' => 'egr', 'Eucgr.B00251' => 'egr', 'Eucgr.B03533' => 'egr', 'Eucgr.I02381' => 'egr', 'Eucgr.K02700' => 'egr', 'FAN02G0174' => 'fan', 'FAN02G3146' => 'fan', 'FAN04G1672' => 'fan', 'FAN04G2273' => 'fan', 'FAN05G2791' => 'fan', 'FAN05G4035' => 'fan', 'FAN07G0834' => 'fan', 'FAN08G1198' => 'fan', 'FAN09G4182' => 'fan', 'FAN12G0496' => 'fan', 'FAN13G1027' => 'fan', 'FAN13G2951' => 'fan', 'FAN14G0705' => 'fan', 'FAN14G0720' => 'fan', 'FAN17G0201' => 'fan', 'FAN17G2665' => 'fan', 'FAN18G1456' => 'fan', 'FAN18G1525' => 'fan', 'FAN18G3500' => 'fan', 'FAN28G2670' => 'fan', 'FvH4_1g12391' => 'fve', 'FvH4_4g23220' => 'fve', 'FvH4_5g08810' => 'fve', 'FvH4_5g28960' => 'fve', 'FvH4_6g42820' => 'fve', 'FvH4_6g51110' => 'fve', 'Glyma.02G051802' => 'gma', 'Glyma.04G185300' => 'gma', 'Glyma.05G202900' => 'gma', 'Glyma.08G010300' => 'gma', 'Glyma.16G131900' => 'gma', 'Glyma.17G087900' => 'gma', 'Gohir.A07G048600' => 'ghi', 'Gohir.A11G179000' => 'ghi', 'Gohir.A12G140900' => 'ghi', 'Gohir.A12G140950' => 'ghi', 'Gohir.A12G191700' => 'ghi', 'Gohir.A13G086300' => 'ghi', 'Gohir.D07G052900' => 'ghi', 'Gohir.D11G186600' => 'ghi', 'Gohir.D12G145575' => 'ghi', 'Gohir.D12G145650' => 'ghi', 'Gohir.D12G145725' => 'ghi', 'Gohir.D12G194050' => 'ghi', 'Gohir.D13G091800' => 'ghi', 'Gorai.001G055900' => 'gra', 'Gorai.007G198400' => 'gra', 'Gorai.008G157000' => 'gra', 'Gorai.008G157100' => 'gra', 'Gorai.008G208700' => 'gra', 'Gorai.010G138700' => 'gra', 'GSVIVG01000977001' => 'vvi', 'GSVIVG01007708001' => 'vvi', 'GSVIVG01008587001' => 'vvi', 'GSVIVG01018849001' => 'vvi', 'GSVIVG01032432001' => 'vvi', 'HanXRQChr02g0034131' => 'han', 'HanXRQChr02g0035981' => 'han', 'HanXRQChr02g0035991' => 'han', 'HanXRQChr05g0155611' => 'han', 'HanXRQChr05g0155621' => 'han', 'HanXRQChr08g0236501' => 'han', 'HanXRQChr09g0261321' => 'han', 'HanXRQChr09g0272081' => 'han', 'HanXRQChr10g0310741' => 'han', 'HanXRQChr11g0325591' => 'han', 'HanXRQChr12g0385691' => 'han', 'HanXRQChr13g0387801' => 'han', 'HanXRQChr15g0463011' => 'han', 'Haze_03826' => 'cav', 'Haze_03827' => 'cav', 'Haze_07183' => 'cav', 'Haze_07537' => 'cav', 'Haze_07539' => 'cav', 'Haze_12461' => 'cav', 'Haze_16115' => 'cav', 'Haze_16808' => 'cav', 'Haze_18531' => 'cav', 'Hma1.2p1_0046F.1_g026700' => 'hma', 'Hma1.2p1_0046F.1_g026710' => 'hma', 'Hma1.2p1_0168F.1_g074340' => 'hma', 'Hma1.2p1_0266F.1_g107030' => 'hma', 'Hma1.2p1_0266F.1_g107060' => 'hma', 'Hma1.2p1_0275F.1_g110510' => 'hma', 'Hma1.2p1_0592F.1_g185490' => 'hma', 'Hma1.2p1_0592F.1_g185500' => 'hma', 'Hma1.2p1_0592F.1_g185510' => 'hma', 'Hma1.2p1_0592F.1_g185520' => 'hma', 'Hma1.2p1_0592F.1_g185530' => 'hma', 'Hma1.2p1_0818F.1_g223450' => 'hma', 'HPP92_009708' => 'vpl', 'HPP92_009793' => 'vpl', 'HPP92_009796' => 'vpl', 'HPP92_009797' => 'vpl', 'HPP92_014940' => 'vpl', 'HPP92_014988' => 'vpl', 'Hund02463' => 'sun', 'Hund02760' => 'sun', 'Hund05071' => 'sun', 'Hund10108' => 'sun', 'Hund11204' => 'sun', 'Hund14016' => 'sun', 'Hund16464' => 'sun', 'Lalb_Chr09g0333391' => 'lal', 'Lalb_Chr11g0070461' => 'lal', 'Lalb_Chr12g0201671' => 'lal', 'Lalb_Chr13g0297161' => 'lal', 'Lj1g0002823' => 'lja', 'Lj3C1074T6' => 'lonja', 'Lj4A212T28' => 'lonja', 'Lj4g0005516' => 'lja', 'Lj4g0013705' => 'lja', 'Lj4g0027865' => 'lja', 'Lj5C92G16' => 'lonja', 'Lj5C92T12' => 'lonja', 'Lj7C596T3' => 'lonja', 'Lj9A446G59' => 'lonja', 'Lj9A482G21' => 'lonja', 'Lsat_1_v5_gn_1_28261' => 'lsa', 'Lsat_1_v5_gn_1_28281' => 'lsa', 'Lsat_1_v5_gn_1_32721' => 'lsa', 'Lsat_1_v5_gn_4_151760' => 'lsa', 'Lsat_1_v5_gn_4_2120' => 'lsa', 'Lsat_1_v5_gn_4_75761' => 'lsa', 'Lsat_1_v5_gn_5_10920' => 'lsa', 'Manes.02G099900' => 'mes', 'Manes.11G096200' => 'mes', 'Manes.12G007200' => 'mes', 'Manes.14G048300' => 'mes', 'Manes.17G114700' => 'mes', 'Mapoly0002s0070' => 'mpo', 'Mapoly0029s0099' => 'mpo', 'MBI07_g24742_MAGBIO' => 'mbi', 'MBI10_g27988_MAGBIO' => 'mbi', 'MBI11_g13057_MAGBIO' => 'mbi', 'MD02G1137200' => 'mdo', 'MD06G1137200' => 'mdo', 'MD07G1122300' => 'mdo', 'MD09G1078200' => 'mdo', 'MD13G1123700' => 'mdo', 'MD14G1151900' => 'mdo', 'MD17G1030900' => 'mdo', 'MD17G1068200' => 'mdo', 'MD17G1068600' => 'mdo', 'Medtr3g077540' => 'mtr', 'Medtr4g105530' => 'mtr', 'Medtr8g076580' => 'mtr', 'Medtr8g076590' => 'mtr', 'Medtr8g096410' => 'mtr', 'MELO3C016411.2' => 'cme', 'MELO3C017780.2' => 'cme', 'MELO3C022560.2' => 'cme', 'MELO3C026187.2' => 'cme', 'MELO3C026286.2' => 'cme', 'MELO3C032854.2' => 'cme', 'Migut.H02495' => 'egut', 'Migut.I00561' => 'egut', 'Migut.K01015' => 'egut', 'Migut.K01016' => 'egut', 'Migut.L00743' => 'egut', 'Migut.L00744' => 'egut', 'Migut.L00746' => 'egut', 'Migut.L00798' => 'egut', 'Migut.L00799' => 'egut', 'Migut.N02096' => 'egut', 'MSTRG.11259' => 'ama', 'MSTRG.23142' => 'ama', 'MSTRG.2499' => 'ama', 'Nitab4.5_0000003g0730' => 'nta', 'Nitab4.5_0000137g0020' => 'nta', 'Nitab4.5_0000721g0210' => 'nta', 'Nitab4.5_0000723g0050' => 'nta', 'Nitab4.5_0000913g0070' => 'nta', 'Nitab4.5_0001332g0040' => 'nta', 'Nitab4.5_0001771g0050' => 'nta', 'Nitab4.5_0001918g0050' => 'nta', 'Nitab4.5_0002686g0030' => 'nta', 'Nitab4.5_0003156g0020' => 'nta', 'Nitab4.5_0003383g0040' => 'nta', 'Nitab4.5_0003918g0010' => 'nta', 'Nitab4.5_0006760g0010' => 'nta', 'Nn1g05981' => 'nnu', 'Nn1g06288' => 'nnu', 'Nn3g16371' => 'nnu', 'Nn3g16786' => 'nnu', 'Nn4g22232' => 'nnu', 'Oeu005144.1' => 'oeu', 'Oeu005145.1' => 'oeu', 'Oeu011348.1' => 'oeu', 'Oeu016415.1' => 'oeu', 'Oeu023501.1' => 'oeu', 'Oeu044473.1' => 'oeu', 'Oeu048892.2' => 'oeu', 'Os01g0549200' => 'osa', 'Os02g0469300' => 'osa', 'Os04g0311100' => 'osa', 'Os06g0474900' => 'osa', 'Os10g0181700' => 'osa', 'Os11g0454800' => 'osa', 'Peaxi162Scf00037g00714' => 'pax', 'Peaxi162Scf00084g01217' => 'pax', 'Peaxi162Scf00257g00217' => 'pax', 'Peaxi162Scf00516g00215' => 'pax', 'Peaxi162Scf00689g00123' => 'pax', 'PGR044G2719' => 'pgr', 'PGR083G1360' => 'pgr', 'PGR102G2849' => 'pgr', 'PGR119G2534' => 'pgr', 'PGSC0003DMG400003538' => 'stu', 'PGSC0003DMG400028138' => 'stu', 'PGSC0003DMG400031732' => 'stu', 'PGSC0003DMG400038165' => 'stu', 'Phvul.002G284600' => 'pvu', 'Phvul.003G258200' => 'pvu', 'Phvul.009G176500' => 'pvu', 'Potri.003G167201' => 'ptr', 'Potri.005G118400' => 'ptr', 'Potri.012G089000' => 'ptr', 'Potri.012G102800' => 'ptr', 'Potri.015G079400' => 'ptr', 'Potri.015G100900' => 'ptr', 'Pp3c14_9810' => 'ppa', 'Pp3c15_10450' => 'ppa', 'Pp3c20_19150' => 'ppa', 'Pp3c23_12740' => 'ppa', 'Pp3c23_6310' => 'ppa', 'Pp3c24_3720' => 'ppa', 'Pp3c27_2580' => 'ppa', 'Pp3c9_8990' => 'ppa', 'PRCOL_00002854' => 'pco', 'Prupe.1G221200' => 'ppe', 'Prupe.3G289000' => 'ppe', 'Prupe.5G147000' => 'ppe', 'Prupe.6G157300' => 'ppe', 'Prupe.7G163400' => 'ppe', 'Psat0s2177g0040' => 'psa', 'Psat3g174760' => 'psa', 'Psat3g192160' => 'psa', 'Psat4g058520' => 'psa', 'Psat4g096840' => 'psa', 'Psat7g037320' => 'psa', 'PSO017G1274' => 'pso', 'PSO017G5166' => 'pso', 'PSO063G4558' => 'pso', 'PSO170G4458' => 'pso', 'PSO170G5005' => 'pso', 'PSO210G6156' => 'pso', 'PSO210G6635' => 'pso', 'PSO210G7397' => 'pso', 'PSO210G7700' => 'pso', 'PSO455G0035' => 'pso', 'PSO455G0180' => 'pso', 'PSO478G4515' => 'pso', 'PSO832G1305' => 'pso', 'PSO832G3489' => 'pso', 'QL02p075247' => 'qlo', 'QL03p051148' => 'qlo', 'QL05p010313' => 'qlo', 'QL06p034627' => 'qlo', 'QL10p001889' => 'qlo', 'QL10p010846' => 'qlo', 'RcHm_v2.0_Chr1g0350621' => 'rch', 'RcHm_v2.0_Chr1g0350641' => 'rch', 'RcHm_v2.0_Chr2g0092891' => 'rch', 'RcHm_v2.0_Chr2g0100251' => 'rch', 'RcHm_v2.0_Chr2g0158661' => 'rch', 'RcHm_v2.0_Chr2g0172741' => 'rch', 'RcHm_v2.0_Chr4g0429571' => 'rch', 'RcHm_v2.0_Chr5g0042471' => 'rch', 'RcHm_v2.0_Chr7g0189451' => 'rch', 'Rhsim08G0052000' => 'rsi', 'Rhsim08G0174400' => 'rsi', 'Rhsim08G0193200' => 'rsi', 'Rhsim10G0214800' => 'rsi', 'Rhsim10G0214900' => 'rsi', 'Rhsim10G0215000' => 'rsi', 'Rhsim12G0022900' => 'rsi', 'Rhsim12G0177500' => 'rsi', 'Rhsim12G0177700' => 'rsi', 'Sabra03G0122600' => 'sbr', 'Sabra05G0097400' => 'sbr', 'Sabra12G0064100' => 'sbr', 'Sabra15G0121300' => 'sbr', 'SalBow2G0642' => 'sbo', 'SalBow5G2667' => 'sbo', 'SalBow5G4873' => 'sbo', 'SalBow8G2395' => 'sbo', 'Sc03g0003290' => 'sci', 'Sc10g0010130' => 'sci', 'Sc22g0003650' => 'sci', 'Sed0001603' => 'sed', 'Sed0004259' => 'sed', 'Sed0006789' => 'sed', 'Sed0011838' => 'sed', 'Sed0012964' => 'sed', 'Sed0016383' => 'sed', 'Sed0019010' => 'sed', 'Sed0020188' => 'sed', 'SEGI_04702' => 'sgi', 'SEGI_17231' => 'sgi', 'SEGI_18877' => 'sgi', 'SEGI_25196' => 'sgi', 'SEGI_25515' => 'sgi', 'SEGI_28445' => 'sgi', 'SEGI_37452' => 'sgi', 'SGA_v2.0_scaffold188G40336' => 'sas', 'SGA_v2.0_scaffold228G43247' => 'sas', 'SGA_v2.0_scaffold280G46853' => 'sas', 'SGA_v2.0_scaffold34G13808' => 'sas', 'SGA_v2.0_scaffold40G15576' => 'sas', 'SGA_v2.0_scaffold611G53188' => 'sas', 'SGA_v2.0_scaffold78G25461' => 'sas', 'SGA_v2.0_scaffold90G27888' => 'sas', 'SHI08601' => 'shi', 'SHI08606' => 'shi', 'SHI17117' => 'shi', 'SHI17119' => 'shi', 'SMO118G0201' => 'smo', 'SMO169G0247' => 'smo', 'SMO176G0006' => 'smo', 'SMO176G0015' => 'smo', 'SMO202G0006' => 'smo', 'SMO240G0050' => 'smo', 'SMO286G0009' => 'smo', 'SMO338G0033' => 'smo', 'SMO356G0533' => 'smo', 'SMO364G0382' => 'smo', 'SMO367G0166' => 'smo', 'SMO367G1098' => 'smo', 'Solyc01g009920.3' => 'sly', 'Solyc01g099300.3' => 'sly', 'Solyc02g084700.3' => 'sly', 'Solyc03g097520.3' => 'sly', 'Solyc06g071580.3' => 'sly', 'Solyc10g081760.3' => 'sly', 'Sopen01g005480' => 'spe', 'Sopen01g042850' => 'spe', 'Sopen02g029370' => 'spe', 'Sopen03g028280' => 'spe', 'Sopen06g027870' => 'spe', 'Sopen10g032270' => 'spe', 'Sp5g18180' => 'spa', 'Sp6g12880' => 'spa', 'Sp6g30850' => 'spa', 'Sp7g22960' => 'spa', 'Sp7g34010' => 'spa', 'SpUn1326_0010' => 'spa', 'TAR371G0242' => 'tar', 'TAR622G0638' => 'tar', 'TAR628G1548' => 'tar', 'TAR629G1079' => 'tar', 'TAR629G3413' => 'tar', 'THA.LOC104804249' => 'tha', 'THA.LOC104808315' => 'tha', 'THA.LOC104809238' => 'tha', 'THA.LOC104825484' => 'tha', 'Thecc.01G025500' => 'tca', 'Thecc.03G015800' => 'tca', 'Thecc.03G018000' => 'tca', 'Thecc.03G134800' => 'tca', 'Thecc.04G014700' => 'tca', 'Thhalv10006991m.g' => 'esa', 'Thhalv10012707m.g' => 'esa', 'Thhalv10015739m.g' => 'esa', 'Thhalv10024553m.g' => 'esa', 'Thhalv10024673m.g' => 'esa', 'Thhalv10029187m.g' => 'esa', 'TPR.G12971' => 'tpr', 'TPR.G29396' => 'tpr', 'TPR.G33376' => 'tpr', 'TPR.G35508' => 'tpr', 'TPR.G35516' => 'tpr', 'TPR.G37317' => 'tpr', 'TPR.G37389' => 'tpr', 'TPR.G37523' => 'tpr', 'TPR.G559' => 'tpr', 'TWI14G0070' => 'twi', 'TWI14G0729' => 'twi', 'TWI18G0596' => 'twi', 'TWI39G0780' => 'twi', 'TWI39G0850' => 'twi', 'TWI73G1052' => 'twi', 'unitig_52.g17485' => 'ugi', 'unitig_61.g26355' => 'ugi', 'vmacro01040' => 'vma', 'vmacro16731' => 'vma', 'vmacro18270' => 'vma', 'vmacro19142' => 'vma', 'vmacro19407' => 'vma', 'vmacro19408' => 'vma', 'vmacro21899' => 'vma', 'vmacro21900' => 'vma', 'vmacro21901' => 'vma', 'VMungo0251G0490' => 'vmu', 'VMungo0251G1748' => 'vmu', 'VMungo1309G0421' => 'vmu', 'Zm00001eb086500' => 'zma', 'Zm00001eb150680' => 'zma', 'Zm00001eb162330' => 'zma', 'Zm00001eb203130' => 'zma', 'Zm00001eb369480' => 'zma', 'Zm00001eb382340' => 'zma', 'Zm00001eb416360' => 'zma' ), 'gf_id' => 'HOM05D000902', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000902' ), 'data_identifier' => 'HOM05D000902', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000902', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '663', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02470' => 'bna', 'A01p16260' => 'bna', 'A02p01680' => 'bna', 'A03p16600' => 'bna', 'A03p55660' => 'bna', 'A03p64160' => 'bna', 'A03p64170' => 'bna', 'A08p31900' => 'bna', 'A09p59530' => 'bna', 'A10p08230' => 'bna', 'A10p25090' => 'bna', 'Aa31LG3G7100' => 'aar', 'Aa31LG3G7110' => 'aar', 'Aa31LG6G13160' => 'aar', 'Aa31LG7G10770' => 'aar', 'Aa31LG7G3830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2723' => 'aag', 'Actinidia08045' => 'ach', 'Actinidia08888' => 'ach', 'Actinidia18333' => 'ach', 'Actinidia19334' => 'ach', 'Actinidia25552' => 'ach', 'Actinidia26089' => 'ach', 'Actinidia30615' => 'ach', 'Actinidia30616' => 'ach', 'Actinidia33083' => 'ach', 'Actinidia35762' => 'ach', 'Ah.02g110620' => 'amhyb', 'Ah.11g046390' => 'amhyb', 'AL1G31670' => 'aly', 'AL6G23730' => 'aly', 'AL7G14740' => 'aly', 'AL7G14750' => 'aly', 'AL7G14760' => 'aly', 'AL7G28220' => 'aly', 'AL8G24940' => 'aly', 'Aqoxy3G01665' => 'aox', 'Aqoxy3G02853' => 'aox', 'Aqoxy5G01513' => 'aox', 'Aqoxy5G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8SKA4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ75LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKDA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0LJZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7REX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZP4YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWX7I5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2QKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS0L9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPCD8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q161UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC7XCF' => 'arhy', 'AT1G19100' => 'ath', 'AT4G24970' => 'ath', 'AT4G36270' => 'ath', 'AT4G36280' => 'ath', 'AT4G36290' => 'ath', 'AT5G13130' => 'ath', 'AT5G50780' => 'ath', 'ATR0582G266' => 'atr', 'ATR0661G195' => 'atr', 'ATR1152G031' => 'atr', 'Atru.chr11.2382' => 'acertr', 'Atru.chr12.2337' => 'acertr', 'Atru.chr3.744' => 'acertr', 'Atru.chr6.1870' => 'acertr', 'Atru.chr9.2515' => 'acertr', 'AUR62004120' => 'cqu', 'AUR62005667' => 'cqu', 'AUR62007634' => 'cqu', 'AUR62008186' => 'cqu', 'AUR62008187' => 'cqu', 'AUR62008188' => 'cqu', 'AUR62027954' => 'cqu', 'AUR62028766' => 'cqu', 'AUR62028767' => 'cqu', 'AUR62028768' => 'cqu', 'AUR62028886' => 'cqu', 'AUR62029563' => 'cqu', 'AUR62038832' => 'cqu', 'BcaB01g04149' => 'bca', 'BcaB03g12940' => 'bca', 'BcaB03g13090' => 'bca', 'BcaB03g14466' => 'bca', 'BcaB05g24035' => 'bca', 'BcaC01g06050' => 'bca', 'BcaC04g19148' => 'bca', 'BcaC04g20761' => 'bca', 'BcaC06g32845' => 'bca', 'BcaC07g41274' => 'bca', 'BcaC09g50827' => 'bca', 'BcaNung00741' => 'bca', 'BcaNung00742' => 'bca', 'BcaNung01859' => 'bca', 'BcaNung03985' => 'bca', 'BcaNung03989' => 'bca', 'BcaNung05661' => 'bca', 'BolC1t00257H' => 'bol', 'BolC1t01956H' => 'bol', 'BolC2t06534H' => 'bol', 'BolC3t14334H' => 'bol', 'BolC5t30451H' => 'bol', 'BolC7t45880H' => 'bol', 'BolC7t46586H' => 'bol', 'BolC8t49301H' => 'bol', 'BolC8t51837H' => 'bol', 'BolC9t56822H' => 'bol', 'BolC9t59235H' => 'bol', 'BraA01t00234Z' => 'bra', 'BraA01t01563Z' => 'bra', 'BraA02t05147Z' => 'bra', 'BraA03t10947Z' => 'bra', 'BraA03t14633Z' => 'bra', 'BraA08t35112Z' => 'bra', 'BraA09t41330Z' => 'bra', 'BraA10t44570Z' => 'bra', 'C01p02670' => 'bna', 'C01p20260' => 'bna', 'C02p05890' => 'bna', 'C03p19530' => 'bna', 'C05p17470' => 'bna', 'C07p53900' => 'bna', 'C07p61630' => 'bna', 'C08p16800' => 'bna', 'C08p42810' => 'bna', 'C09p39480' => 'bna', 'C09p63980' => 'bna', 'CAN.G1001.7' => 'can', 'CAN.G1034.55' => 'can', 'CAN.G143.7' => 'can', 'CAN.G3340.1' => 'can', 'CAN.G358.19' => 'can', 'CAN.G373.2' => 'can', 'CAN.G674.16' => 'can', 'CAN.G674.17' => 'can', 'CAN.G674.18' => 'can', 'CAN.G732.2' => 'can', 'CAN.G732.3' => 'can', 'CAN.G993.39' => 'can', 'CANSAT01G2052' => 'cansat', 'CANSAT80G0070' => 'cansat', 'CANSAT80G0483' => 'cansat', 'CANSAT80G0625' => 'cansat', 'CARHR019690' => 'chi', 'CARHR080280' => 'chi', 'CARHR152750' => 'chi', 'CARHR152760' => 'chi', 'CARHR152770' => 'chi', 'CARHR200340' => 'chi', 'CARHR232370' => 'chi', 'CARHR244670' => 'chi', 'CARHR244680' => 'chi', 'CARHR257520' => 'chi', 'Carub.0001s1872' => 'cru', 'Carub.0006s1130' => 'cru', 'Carub.0007s0396' => 'cru', 'Carub.0007s0397' => 'cru', 'Carub.0007s1608' => 'cru', 'Carub.0008s1068' => 'cru', 'Carub.0008s1077' => 'cru', 'Ca_16158_v3' => 'car', 'Ca_17571_v3' => 'car', 'Ca_21936_v3' => 'car', 'Ca_22350_v3' => 'car', 'CBR_g22445' => 'cbr', 'CBR_g26290' => 'cbr', 'Cc04_g09610' => 'ccan', 'Cc04_g12280' => 'ccan', 'Cc07_g10230' => 'ccan', 'CDE02G0093' => 'cde', 'CDE02G0701' => 'cde', 'CDE04G1050' => 'cde', 'CDE05G1833' => 'cde', 'CDE05G3058' => 'cde', 'CDE05G3380' => 'cde', 'CDE06G0536' => 'cde', 'Cfa006923' => 'cfa', 'Cfa009402' => 'cfa', 'Cfa018751' => 'cfa', 'Cfa019164' => 'cfa', 'Cfa022935' => 'cfa', 'Ciclev10019081m.g' => 'ccl', 'Ciclev10025076m.g' => 'ccl', 'Ciclev10030712m.g' => 'ccl', 'Ciclev10033760m.g' => 'ccl', 'CiPaw.05G105600' => 'cil', 'CiPaw.08G136700' => 'cil', 'CiPaw.11G003900' => 'cil', 'CiPaw.11G023700' => 'cil', 'CiPaw.12G003700' => 'cil', 'ClCG06G017100' => 'cla', 'ClCG06G018110' => 'cla', 'ClCG07G008800' => 'cla', 'ClCG07G015330' => 'cla', 'COL.COLO4_13698' => 'col', 'COL.COLO4_16659' => 'col', 'COL.COLO4_21986' => 'col', 'COL.COLO4_24049' => 'col', 'COL.COLO4_29061' => 'col', 'COL.COLO4_29075' => 'col', 'COL.COLO4_30094' => 'col', 'Cpa.g.c33689' => 'cpa', 'Cpa.g.sc108.39' => 'cpa', 'Cpa.g.sc108.41' => 'cpa', 'Cpa.g.sc1163.1' => 'cpa', 'Cpa.g.sc4.155' => 'cpa', 'Cpa.g.sc6.194' => 'cpa', 'CsaV3_1G000340' => 'csa', 'CsaV3_1G001400' => 'csa', 'CsaV3_4G002220' => 'csa', 'CsaV3_4G005370' => 'csa', 'CSS0007487' => 'camsi', 'CSS0008066' => 'camsi', 'CSS0009120' => 'camsi', 'CSS0015512' => 'camsi', 'CSS0022409' => 'camsi', 'CSS0025358' => 'camsi', 'CSS0044547' => 'camsi', 'DCAR_013057' => 'dca', 'DCAR_015058' => 'dca', 'DCAR_016027' => 'dca', 'DCAR_017327' => 'dca', 'DCAR_020743' => 'dca', 'DCAR_026157' => 'dca', 'DCAR_032339' => 'dca', 'DCAR_032340' => 'dca', 'Dinv11200' => 'din', 'Dinv11201' => 'din', 'Dinv20631' => 'din', 'Dinv23182' => 'din', 'Dinv33466' => 'din', 'Dinv33583' => 'din', 'Dinv38565' => 'din', 'Duzib068G0200' => 'dzi', 'Duzib147G0132' => 'dzi', 'Duzib147G0635' => 'dzi', 'Duzib205G1670' => 'dzi', 'Duzib251G0606' => 'dzi', 'ECA232G3336' => 'eca', 'ECA232G3763' => 'eca', 'ECA232G4845' => 'eca', 'ECA234G1607' => 'eca', 'ECA246G0932' => 'eca', 'ECA247G0781' => 'eca', 'ECA247G1932' => 'eca', 'ECA247G2079' => 'eca', 'ECA247G3338' => 'eca', 'ECA247G4115' => 'eca', 'EL10Ac3g06552' => 'bvu', 'EL10Ac5g10721' => 'bvu', 'EL10Ac5g10722' => 'bvu', 'EL10Ac5g10723' => 'bvu', 'EL10Ac5g11361' => 'bvu', 'EL10Ac6g13553' => 'bvu', 'EL10As8g23872' => 'bvu', 'Eucgr.B00250' => 'egr', 'Eucgr.B00251' => 'egr', 'Eucgr.B03533' => 'egr', 'Eucgr.I02381' => 'egr', 'Eucgr.K02700' => 'egr', 'FAN02G0174' => 'fan', 'FAN02G3146' => 'fan', 'FAN04G1672' => 'fan', 'FAN04G2273' => 'fan', 'FAN05G2791' => 'fan', 'FAN05G4035' => 'fan', 'FAN07G0834' => 'fan', 'FAN08G1198' => 'fan', 'FAN09G4182' => 'fan', 'FAN12G0496' => 'fan', 'FAN13G1027' => 'fan', 'FAN13G2951' => 'fan', 'FAN14G0705' => 'fan', 'FAN14G0720' => 'fan', 'FAN17G0201' => 'fan', 'FAN17G2665' => 'fan', 'FAN18G1456' => 'fan', 'FAN18G1525' => 'fan', 'FAN18G3500' => 'fan', 'FAN28G2670' => 'fan', 'FvH4_1g12391' => 'fve', 'FvH4_4g23220' => 'fve', 'FvH4_5g08810' => 'fve', 'FvH4_5g28960' => 'fve', 'FvH4_6g42820' => 'fve', 'FvH4_6g51110' => 'fve', 'Glyma.02G051802' => 'gma', 'Glyma.04G185300' => 'gma', 'Glyma.05G202900' => 'gma', 'Glyma.08G010300' => 'gma', 'Glyma.16G131900' => 'gma', 'Glyma.17G087900' => 'gma', 'Gohir.A07G048600' => 'ghi', 'Gohir.A11G179000' => 'ghi', 'Gohir.A12G140900' => 'ghi', 'Gohir.A12G140950' => 'ghi', 'Gohir.A12G191700' => 'ghi', 'Gohir.A13G086300' => 'ghi', 'Gohir.D07G052900' => 'ghi', 'Gohir.D11G186600' => 'ghi', 'Gohir.D12G145575' => 'ghi', 'Gohir.D12G145650' => 'ghi', 'Gohir.D12G145725' => 'ghi', 'Gohir.D12G194050' => 'ghi', 'Gohir.D13G091800' => 'ghi', 'Gorai.001G055900' => 'gra', 'Gorai.007G198400' => 'gra', 'Gorai.008G157000' => 'gra', 'Gorai.008G157100' => 'gra', 'Gorai.008G208700' => 'gra', 'Gorai.010G138700' => 'gra', 'GSVIVG01000977001' => 'vvi', 'GSVIVG01007708001' => 'vvi', 'GSVIVG01008587001' => 'vvi', 'GSVIVG01018849001' => 'vvi', 'GSVIVG01032432001' => 'vvi', 'HanXRQChr02g0034131' => 'han', 'HanXRQChr02g0035981' => 'han', 'HanXRQChr02g0035991' => 'han', 'HanXRQChr05g0155611' => 'han', 'HanXRQChr05g0155621' => 'han', 'HanXRQChr08g0236501' => 'han', 'HanXRQChr09g0261321' => 'han', 'HanXRQChr09g0272081' => 'han', 'HanXRQChr10g0310741' => 'han', 'HanXRQChr11g0325591' => 'han', 'HanXRQChr12g0385691' => 'han', 'HanXRQChr13g0387801' => 'han', 'HanXRQChr15g0463011' => 'han', 'Haze_03826' => 'cav', 'Haze_03827' => 'cav', 'Haze_07183' => 'cav', 'Haze_07537' => 'cav', 'Haze_07539' => 'cav', 'Haze_12461' => 'cav', 'Haze_16115' => 'cav', 'Haze_16808' => 'cav', 'Haze_18531' => 'cav', 'Hma1.2p1_0046F.1_g026700' => 'hma', 'Hma1.2p1_0046F.1_g026710' => 'hma', 'Hma1.2p1_0168F.1_g074340' => 'hma', 'Hma1.2p1_0266F.1_g107030' => 'hma', 'Hma1.2p1_0266F.1_g107060' => 'hma', 'Hma1.2p1_0275F.1_g110510' => 'hma', 'Hma1.2p1_0592F.1_g185490' => 'hma', 'Hma1.2p1_0592F.1_g185500' => 'hma', 'Hma1.2p1_0592F.1_g185510' => 'hma', 'Hma1.2p1_0592F.1_g185520' => 'hma', 'Hma1.2p1_0592F.1_g185530' => 'hma', 'Hma1.2p1_0818F.1_g223450' => 'hma', 'HPP92_009708' => 'vpl', 'HPP92_009793' => 'vpl', 'HPP92_009796' => 'vpl', 'HPP92_009797' => 'vpl', 'HPP92_014940' => 'vpl', 'HPP92_014988' => 'vpl', 'Hund02463' => 'sun', 'Hund02760' => 'sun', 'Hund05071' => 'sun', 'Hund10108' => 'sun', 'Hund11204' => 'sun', 'Hund14016' => 'sun', 'Hund16464' => 'sun', 'Lalb_Chr09g0333391' => 'lal', 'Lalb_Chr11g0070461' => 'lal', 'Lalb_Chr12g0201671' => 'lal', 'Lalb_Chr13g0297161' => 'lal', 'Lj1g0002823' => 'lja', 'Lj3C1074T6' => 'lonja', 'Lj4A212T28' => 'lonja', 'Lj4g0005516' => 'lja', 'Lj4g0013705' => 'lja', 'Lj4g0027865' => 'lja', 'Lj5C92G16' => 'lonja', 'Lj5C92T12' => 'lonja', 'Lj7C596T3' => 'lonja', 'Lj9A446G59' => 'lonja', 'Lj9A482G21' => 'lonja', 'Lsat_1_v5_gn_1_28261' => 'lsa', 'Lsat_1_v5_gn_1_28281' => 'lsa', 'Lsat_1_v5_gn_1_32721' => 'lsa', 'Lsat_1_v5_gn_4_151760' => 'lsa', 'Lsat_1_v5_gn_4_2120' => 'lsa', 'Lsat_1_v5_gn_4_75761' => 'lsa', 'Lsat_1_v5_gn_5_10920' => 'lsa', 'Manes.02G099900' => 'mes', 'Manes.11G096200' => 'mes', 'Manes.12G007200' => 'mes', 'Manes.14G048300' => 'mes', 'Manes.17G114700' => 'mes', 'Mapoly0002s0070' => 'mpo', 'Mapoly0029s0099' => 'mpo', 'MBI07_g24742_MAGBIO' => 'mbi', 'MBI10_g27988_MAGBIO' => 'mbi', 'MBI11_g13057_MAGBIO' => 'mbi', 'MD02G1137200' => 'mdo', 'MD06G1137200' => 'mdo', 'MD07G1122300' => 'mdo', 'MD09G1078200' => 'mdo', 'MD13G1123700' => 'mdo', 'MD14G1151900' => 'mdo', 'MD17G1030900' => 'mdo', 'MD17G1068200' => 'mdo', 'MD17G1068600' => 'mdo', 'Medtr3g077540' => 'mtr', 'Medtr4g105530' => 'mtr', 'Medtr8g076580' => 'mtr', 'Medtr8g076590' => 'mtr', 'Medtr8g096410' => 'mtr', 'MELO3C016411.2' => 'cme', 'MELO3C017780.2' => 'cme', 'MELO3C022560.2' => 'cme', 'MELO3C026187.2' => 'cme', 'MELO3C026286.2' => 'cme', 'MELO3C032854.2' => 'cme', 'Migut.H02495' => 'egut', 'Migut.I00561' => 'egut', 'Migut.K01015' => 'egut', 'Migut.K01016' => 'egut', 'Migut.L00743' => 'egut', 'Migut.L00744' => 'egut', 'Migut.L00746' => 'egut', 'Migut.L00798' => 'egut', 'Migut.L00799' => 'egut', 'Migut.N02096' => 'egut', 'MSTRG.11259' => 'ama', 'MSTRG.23142' => 'ama', 'MSTRG.2499' => 'ama', 'Nitab4.5_0000003g0730' => 'nta', 'Nitab4.5_0000137g0020' => 'nta', 'Nitab4.5_0000721g0210' => 'nta', 'Nitab4.5_0000723g0050' => 'nta', 'Nitab4.5_0000913g0070' => 'nta', 'Nitab4.5_0001332g0040' => 'nta', 'Nitab4.5_0001771g0050' => 'nta', 'Nitab4.5_0001918g0050' => 'nta', 'Nitab4.5_0002686g0030' => 'nta', 'Nitab4.5_0003156g0020' => 'nta', 'Nitab4.5_0003383g0040' => 'nta', 'Nitab4.5_0003918g0010' => 'nta', 'Nitab4.5_0006760g0010' => 'nta', 'Nn1g05981' => 'nnu', 'Nn1g06288' => 'nnu', 'Nn3g16371' => 'nnu', 'Nn3g16786' => 'nnu', 'Nn4g22232' => 'nnu', 'Oeu005144.1' => 'oeu', 'Oeu005145.1' => 'oeu', 'Oeu011348.1' => 'oeu', 'Oeu016415.1' => 'oeu', 'Oeu023501.1' => 'oeu', 'Oeu044473.1' => 'oeu', 'Oeu048892.2' => 'oeu', 'Os01g0549200' => 'osa', 'Os02g0469300' => 'osa', 'Os04g0311100' => 'osa', 'Os06g0474900' => 'osa', 'Os10g0181700' => 'osa', 'Os11g0454800' => 'osa', 'Peaxi162Scf00037g00714' => 'pax', 'Peaxi162Scf00084g01217' => 'pax', 'Peaxi162Scf00257g00217' => 'pax', 'Peaxi162Scf00516g00215' => 'pax', 'Peaxi162Scf00689g00123' => 'pax', 'PGR044G2719' => 'pgr', 'PGR083G1360' => 'pgr', 'PGR102G2849' => 'pgr', 'PGR119G2534' => 'pgr', 'PGSC0003DMG400003538' => 'stu', 'PGSC0003DMG400028138' => 'stu', 'PGSC0003DMG400031732' => 'stu', 'PGSC0003DMG400038165' => 'stu', 'Phvul.002G284600' => 'pvu', 'Phvul.003G258200' => 'pvu', 'Phvul.009G176500' => 'pvu', 'Potri.003G167201' => 'ptr', 'Potri.005G118400' => 'ptr', 'Potri.012G089000' => 'ptr', 'Potri.012G102800' => 'ptr', 'Potri.015G079400' => 'ptr', 'Potri.015G100900' => 'ptr', 'Pp3c14_9810' => 'ppa', 'Pp3c15_10450' => 'ppa', 'Pp3c20_19150' => 'ppa', 'Pp3c23_12740' => 'ppa', 'Pp3c23_6310' => 'ppa', 'Pp3c24_3720' => 'ppa', 'Pp3c27_2580' => 'ppa', 'Pp3c9_8990' => 'ppa', 'PRCOL_00002854' => 'pco', 'Prupe.1G221200' => 'ppe', 'Prupe.3G289000' => 'ppe', 'Prupe.5G147000' => 'ppe', 'Prupe.6G157300' => 'ppe', 'Prupe.7G163400' => 'ppe', 'Psat0s2177g0040' => 'psa', 'Psat3g174760' => 'psa', 'Psat3g192160' => 'psa', 'Psat4g058520' => 'psa', 'Psat4g096840' => 'psa', 'Psat7g037320' => 'psa', 'PSO017G1274' => 'pso', 'PSO017G5166' => 'pso', 'PSO063G4558' => 'pso', 'PSO170G4458' => 'pso', 'PSO170G5005' => 'pso', 'PSO210G6156' => 'pso', 'PSO210G6635' => 'pso', 'PSO210G7397' => 'pso', 'PSO210G7700' => 'pso', 'PSO455G0035' => 'pso', 'PSO455G0180' => 'pso', 'PSO478G4515' => 'pso', 'PSO832G1305' => 'pso', 'PSO832G3489' => 'pso', 'QL02p075247' => 'qlo', 'QL03p051148' => 'qlo', 'QL05p010313' => 'qlo', 'QL06p034627' => 'qlo', 'QL10p001889' => 'qlo', 'QL10p010846' => 'qlo', 'RcHm_v2.0_Chr1g0350621' => 'rch', 'RcHm_v2.0_Chr1g0350641' => 'rch', 'RcHm_v2.0_Chr2g0092891' => 'rch', 'RcHm_v2.0_Chr2g0100251' => 'rch', 'RcHm_v2.0_Chr2g0158661' => 'rch', 'RcHm_v2.0_Chr2g0172741' => 'rch', 'RcHm_v2.0_Chr4g0429571' => 'rch', 'RcHm_v2.0_Chr5g0042471' => 'rch', 'RcHm_v2.0_Chr7g0189451' => 'rch', 'Rhsim08G0052000' => 'rsi', 'Rhsim08G0174400' => 'rsi', 'Rhsim08G0193200' => 'rsi', 'Rhsim10G0214800' => 'rsi', 'Rhsim10G0214900' => 'rsi', 'Rhsim10G0215000' => 'rsi', 'Rhsim12G0022900' => 'rsi', 'Rhsim12G0177500' => 'rsi', 'Rhsim12G0177700' => 'rsi', 'Sabra03G0122600' => 'sbr', 'Sabra05G0097400' => 'sbr', 'Sabra12G0064100' => 'sbr', 'Sabra15G0121300' => 'sbr', 'SalBow2G0642' => 'sbo', 'SalBow5G2667' => 'sbo', 'SalBow5G4873' => 'sbo', 'SalBow8G2395' => 'sbo', 'Sc03g0003290' => 'sci', 'Sc10g0010130' => 'sci', 'Sc22g0003650' => 'sci', 'Sed0001603' => 'sed', 'Sed0004259' => 'sed', 'Sed0006789' => 'sed', 'Sed0011838' => 'sed', 'Sed0012964' => 'sed', 'Sed0016383' => 'sed', 'Sed0019010' => 'sed', 'Sed0020188' => 'sed', 'SEGI_04702' => 'sgi', 'SEGI_17231' => 'sgi', 'SEGI_18877' => 'sgi', 'SEGI_25196' => 'sgi', 'SEGI_25515' => 'sgi', 'SEGI_28445' => 'sgi', 'SEGI_37452' => 'sgi', 'SGA_v2.0_scaffold188G40336' => 'sas', 'SGA_v2.0_scaffold228G43247' => 'sas', 'SGA_v2.0_scaffold280G46853' => 'sas', 'SGA_v2.0_scaffold34G13808' => 'sas', 'SGA_v2.0_scaffold40G15576' => 'sas', 'SGA_v2.0_scaffold611G53188' => 'sas', 'SGA_v2.0_scaffold78G25461' => 'sas', 'SGA_v2.0_scaffold90G27888' => 'sas', 'SHI08601' => 'shi', 'SHI08606' => 'shi', 'SHI17117' => 'shi', 'SHI17119' => 'shi', 'SMO118G0201' => 'smo', 'SMO169G0247' => 'smo', 'SMO176G0006' => 'smo', 'SMO176G0015' => 'smo', 'SMO202G0006' => 'smo', 'SMO240G0050' => 'smo', 'SMO286G0009' => 'smo', 'SMO338G0033' => 'smo', 'SMO356G0533' => 'smo', 'SMO364G0382' => 'smo', 'SMO367G0166' => 'smo', 'SMO367G1098' => 'smo', 'Solyc01g009920.3' => 'sly', 'Solyc01g099300.3' => 'sly', 'Solyc02g084700.3' => 'sly', 'Solyc03g097520.3' => 'sly', 'Solyc06g071580.3' => 'sly', 'Solyc10g081760.3' => 'sly', 'Sopen01g005480' => 'spe', 'Sopen01g042850' => 'spe', 'Sopen02g029370' => 'spe', 'Sopen03g028280' => 'spe', 'Sopen06g027870' => 'spe', 'Sopen10g032270' => 'spe', 'Sp5g18180' => 'spa', 'Sp6g12880' => 'spa', 'Sp6g30850' => 'spa', 'Sp7g22960' => 'spa', 'Sp7g34010' => 'spa', 'SpUn1326_0010' => 'spa', 'TAR371G0242' => 'tar', 'TAR622G0638' => 'tar', 'TAR628G1548' => 'tar', 'TAR629G1079' => 'tar', 'TAR629G3413' => 'tar', 'THA.LOC104804249' => 'tha', 'THA.LOC104808315' => 'tha', 'THA.LOC104809238' => 'tha', 'THA.LOC104825484' => 'tha', 'Thecc.01G025500' => 'tca', 'Thecc.03G015800' => 'tca', 'Thecc.03G018000' => 'tca', 'Thecc.03G134800' => 'tca', 'Thecc.04G014700' => 'tca', 'Thhalv10006991m.g' => 'esa', 'Thhalv10012707m.g' => 'esa', 'Thhalv10015739m.g' => 'esa', 'Thhalv10024553m.g' => 'esa', 'Thhalv10024673m.g' => 'esa', 'Thhalv10029187m.g' => 'esa', 'TPR.G12971' => 'tpr', 'TPR.G29396' => 'tpr', 'TPR.G33376' => 'tpr', 'TPR.G35508' => 'tpr', 'TPR.G35516' => 'tpr', 'TPR.G37317' => 'tpr', 'TPR.G37389' => 'tpr', 'TPR.G37523' => 'tpr', 'TPR.G559' => 'tpr', 'TWI14G0070' => 'twi', 'TWI14G0729' => 'twi', 'TWI18G0596' => 'twi', 'TWI39G0780' => 'twi', 'TWI39G0850' => 'twi', 'TWI73G1052' => 'twi', 'unitig_52.g17485' => 'ugi', 'unitig_61.g26355' => 'ugi', 'vmacro01040' => 'vma', 'vmacro16731' => 'vma', 'vmacro18270' => 'vma', 'vmacro19142' => 'vma', 'vmacro19407' => 'vma', 'vmacro19408' => 'vma', 'vmacro21899' => 'vma', 'vmacro21900' => 'vma', 'vmacro21901' => 'vma', 'VMungo0251G0490' => 'vmu', 'VMungo0251G1748' => 'vmu', 'VMungo1309G0421' => 'vmu', 'Zm00001eb086500' => 'zma', 'Zm00001eb150680' => 'zma', 'Zm00001eb162330' => 'zma', 'Zm00001eb203130' => 'zma', 'Zm00001eb369480' => 'zma', 'Zm00001eb382340' => 'zma', 'Zm00001eb416360' => 'zma' ) $gf_id = 'HOM05D000902' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000902' ) $data_identifier = 'HOM05D000902' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 13, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 10, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 6, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 9, 'hma' => (int) 12, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 4, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 6, 'ppa' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 6, 'rch' => (int) 9, 'rsi' => (int) 9, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 12, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 3, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416360' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000902', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '663', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02470' => 'bna', 'A01p16260' => 'bna', 'A02p01680' => 'bna', 'A03p16600' => 'bna', 'A03p55660' => 'bna', 'A03p64160' => 'bna', 'A03p64170' => 'bna', 'A08p31900' => 'bna', 'A09p59530' => 'bna', 'A10p08230' => 'bna', 'A10p25090' => 'bna', 'Aa31LG3G7100' => 'aar', 'Aa31LG3G7110' => 'aar', 'Aa31LG6G13160' => 'aar', 'Aa31LG7G10770' => 'aar', 'Aa31LG7G3830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2723' => 'aag', 'Actinidia08045' => 'ach', 'Actinidia08888' => 'ach', 'Actinidia18333' => 'ach', 'Actinidia19334' => 'ach', 'Actinidia25552' => 'ach', 'Actinidia26089' => 'ach', 'Actinidia30615' => 'ach', 'Actinidia30616' => 'ach', 'Actinidia33083' => 'ach', 'Actinidia35762' => 'ach', 'Ah.02g110620' => 'amhyb', 'Ah.11g046390' => 'amhyb', 'AL1G31670' => 'aly', 'AL6G23730' => 'aly', 'AL7G14740' => 'aly', 'AL7G14750' => 'aly', 'AL7G14760' => 'aly', 'AL7G28220' => 'aly', 'AL8G24940' => 'aly', 'Aqoxy3G01665' => 'aox', 'Aqoxy3G02853' => 'aox', 'Aqoxy5G01513' => 'aox', 'Aqoxy5G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8SKA4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ75LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKDA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0LJZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7REX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZP4YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWX7I5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2QKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS0L9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPCD8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q161UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC7XCF' => 'arhy', 'AT1G19100' => 'ath', 'AT4G24970' => 'ath', 'AT4G36270' => 'ath', 'AT4G36280' => 'ath', 'AT4G36290' => 'ath', 'AT5G13130' => 'ath', 'AT5G50780' => 'ath', 'ATR0582G266' => 'atr', 'ATR0661G195' => 'atr', 'ATR1152G031' => 'atr', 'Atru.chr11.2382' => 'acertr', 'Atru.chr12.2337' => 'acertr', 'Atru.chr3.744' => 'acertr', 'Atru.chr6.1870' => 'acertr', 'Atru.chr9.2515' => 'acertr', 'AUR62004120' => 'cqu', 'AUR62005667' => 'cqu', 'AUR62007634' => 'cqu', 'AUR62008186' => 'cqu', 'AUR62008187' => 'cqu', 'AUR62008188' => 'cqu', 'AUR62027954' => 'cqu', 'AUR62028766' => 'cqu', 'AUR62028767' => 'cqu', 'AUR62028768' => 'cqu', 'AUR62028886' => 'cqu', 'AUR62029563' => 'cqu', 'AUR62038832' => 'cqu', 'BcaB01g04149' => 'bca', 'BcaB03g12940' => 'bca', 'BcaB03g13090' => 'bca', 'BcaB03g14466' => 'bca', 'BcaB05g24035' => 'bca', 'BcaC01g06050' => 'bca', 'BcaC04g19148' => 'bca', 'BcaC04g20761' => 'bca', 'BcaC06g32845' => 'bca', 'BcaC07g41274' => 'bca', 'BcaC09g50827' => 'bca', 'BcaNung00741' => 'bca', 'BcaNung00742' => 'bca', 'BcaNung01859' => 'bca', 'BcaNung03985' => 'bca', 'BcaNung03989' => 'bca', 'BcaNung05661' => 'bca', 'BolC1t00257H' => 'bol', 'BolC1t01956H' => 'bol', 'BolC2t06534H' => 'bol', 'BolC3t14334H' => 'bol', 'BolC5t30451H' => 'bol', 'BolC7t45880H' => 'bol', 'BolC7t46586H' => 'bol', 'BolC8t49301H' => 'bol', 'BolC8t51837H' => 'bol', 'BolC9t56822H' => 'bol', 'BolC9t59235H' => 'bol', 'BraA01t00234Z' => 'bra', 'BraA01t01563Z' => 'bra', 'BraA02t05147Z' => 'bra', 'BraA03t10947Z' => 'bra', 'BraA03t14633Z' => 'bra', 'BraA08t35112Z' => 'bra', 'BraA09t41330Z' => 'bra', 'BraA10t44570Z' => 'bra', 'C01p02670' => 'bna', 'C01p20260' => 'bna', 'C02p05890' => 'bna', 'C03p19530' => 'bna', 'C05p17470' => 'bna', 'C07p53900' => 'bna', 'C07p61630' => 'bna', 'C08p16800' => 'bna', 'C08p42810' => 'bna', 'C09p39480' => 'bna', 'C09p63980' => 'bna', 'CAN.G1001.7' => 'can', 'CAN.G1034.55' => 'can', 'CAN.G143.7' => 'can', 'CAN.G3340.1' => 'can', 'CAN.G358.19' => 'can', 'CAN.G373.2' => 'can', 'CAN.G674.16' => 'can', 'CAN.G674.17' => 'can', 'CAN.G674.18' => 'can', 'CAN.G732.2' => 'can', 'CAN.G732.3' => 'can', 'CAN.G993.39' => 'can', 'CANSAT01G2052' => 'cansat', 'CANSAT80G0070' => 'cansat', 'CANSAT80G0483' => 'cansat', 'CANSAT80G0625' => 'cansat', 'CARHR019690' => 'chi', 'CARHR080280' => 'chi', 'CARHR152750' => 'chi', 'CARHR152760' => 'chi', 'CARHR152770' => 'chi', 'CARHR200340' => 'chi', 'CARHR232370' => 'chi', 'CARHR244670' => 'chi', 'CARHR244680' => 'chi', 'CARHR257520' => 'chi', 'Carub.0001s1872' => 'cru', 'Carub.0006s1130' => 'cru', 'Carub.0007s0396' => 'cru', 'Carub.0007s0397' => 'cru', 'Carub.0007s1608' => 'cru', 'Carub.0008s1068' => 'cru', 'Carub.0008s1077' => 'cru', 'Ca_16158_v3' => 'car', 'Ca_17571_v3' => 'car', 'Ca_21936_v3' => 'car', 'Ca_22350_v3' => 'car', 'CBR_g22445' => 'cbr', 'CBR_g26290' => 'cbr', 'Cc04_g09610' => 'ccan', 'Cc04_g12280' => 'ccan', 'Cc07_g10230' => 'ccan', 'CDE02G0093' => 'cde', 'CDE02G0701' => 'cde', 'CDE04G1050' => 'cde', 'CDE05G1833' => 'cde', 'CDE05G3058' => 'cde', 'CDE05G3380' => 'cde', 'CDE06G0536' => 'cde', 'Cfa006923' => 'cfa', 'Cfa009402' => 'cfa', 'Cfa018751' => 'cfa', 'Cfa019164' => 'cfa', 'Cfa022935' => 'cfa', 'Ciclev10019081m.g' => 'ccl', 'Ciclev10025076m.g' => 'ccl', 'Ciclev10030712m.g' => 'ccl', 'Ciclev10033760m.g' => 'ccl', 'CiPaw.05G105600' => 'cil', 'CiPaw.08G136700' => 'cil', 'CiPaw.11G003900' => 'cil', 'CiPaw.11G023700' => 'cil', 'CiPaw.12G003700' => 'cil', 'ClCG06G017100' => 'cla', 'ClCG06G018110' => 'cla', 'ClCG07G008800' => 'cla', 'ClCG07G015330' => 'cla', 'COL.COLO4_13698' => 'col', 'COL.COLO4_16659' => 'col', 'COL.COLO4_21986' => 'col', 'COL.COLO4_24049' => 'col', 'COL.COLO4_29061' => 'col', 'COL.COLO4_29075' => 'col', 'COL.COLO4_30094' => 'col', 'Cpa.g.c33689' => 'cpa', 'Cpa.g.sc108.39' => 'cpa', 'Cpa.g.sc108.41' => 'cpa', 'Cpa.g.sc1163.1' => 'cpa', 'Cpa.g.sc4.155' => 'cpa', 'Cpa.g.sc6.194' => 'cpa', 'CsaV3_1G000340' => 'csa', 'CsaV3_1G001400' => 'csa', 'CsaV3_4G002220' => 'csa', 'CsaV3_4G005370' => 'csa', 'CSS0007487' => 'camsi', 'CSS0008066' => 'camsi', 'CSS0009120' => 'camsi', 'CSS0015512' => 'camsi', 'CSS0022409' => 'camsi', 'CSS0025358' => 'camsi', 'CSS0044547' => 'camsi', 'DCAR_013057' => 'dca', 'DCAR_015058' => 'dca', 'DCAR_016027' => 'dca', 'DCAR_017327' => 'dca', 'DCAR_020743' => 'dca', 'DCAR_026157' => 'dca', 'DCAR_032339' => 'dca', 'DCAR_032340' => 'dca', 'Dinv11200' => 'din', 'Dinv11201' => 'din', 'Dinv20631' => 'din', 'Dinv23182' => 'din', 'Dinv33466' => 'din', 'Dinv33583' => 'din', 'Dinv38565' => 'din', 'Duzib068G0200' => 'dzi', 'Duzib147G0132' => 'dzi', 'Duzib147G0635' => 'dzi', 'Duzib205G1670' => 'dzi', 'Duzib251G0606' => 'dzi', 'ECA232G3336' => 'eca', 'ECA232G3763' => 'eca', 'ECA232G4845' => 'eca', 'ECA234G1607' => 'eca', 'ECA246G0932' => 'eca', 'ECA247G0781' => 'eca', 'ECA247G1932' => 'eca', 'ECA247G2079' => 'eca', 'ECA247G3338' => 'eca', 'ECA247G4115' => 'eca', 'EL10Ac3g06552' => 'bvu', 'EL10Ac5g10721' => 'bvu', 'EL10Ac5g10722' => 'bvu', 'EL10Ac5g10723' => 'bvu', 'EL10Ac5g11361' => 'bvu', 'EL10Ac6g13553' => 'bvu', 'EL10As8g23872' => 'bvu', 'Eucgr.B00250' => 'egr', 'Eucgr.B00251' => 'egr', 'Eucgr.B03533' => 'egr', 'Eucgr.I02381' => 'egr', 'Eucgr.K02700' => 'egr', 'FAN02G0174' => 'fan', 'FAN02G3146' => 'fan', 'FAN04G1672' => 'fan', 'FAN04G2273' => 'fan', 'FAN05G2791' => 'fan', 'FAN05G4035' => 'fan', 'FAN07G0834' => 'fan', 'FAN08G1198' => 'fan', 'FAN09G4182' => 'fan', 'FAN12G0496' => 'fan', 'FAN13G1027' => 'fan', 'FAN13G2951' => 'fan', 'FAN14G0705' => 'fan', 'FAN14G0720' => 'fan', 'FAN17G0201' => 'fan', 'FAN17G2665' => 'fan', 'FAN18G1456' => 'fan', 'FAN18G1525' => 'fan', 'FAN18G3500' => 'fan', 'FAN28G2670' => 'fan', 'FvH4_1g12391' => 'fve', 'FvH4_4g23220' => 'fve', 'FvH4_5g08810' => 'fve', 'FvH4_5g28960' => 'fve', 'FvH4_6g42820' => 'fve', 'FvH4_6g51110' => 'fve', 'Glyma.02G051802' => 'gma', 'Glyma.04G185300' => 'gma', 'Glyma.05G202900' => 'gma', 'Glyma.08G010300' => 'gma', 'Glyma.16G131900' => 'gma', 'Glyma.17G087900' => 'gma', 'Gohir.A07G048600' => 'ghi', 'Gohir.A11G179000' => 'ghi', 'Gohir.A12G140900' => 'ghi', 'Gohir.A12G140950' => 'ghi', 'Gohir.A12G191700' => 'ghi', 'Gohir.A13G086300' => 'ghi', 'Gohir.D07G052900' => 'ghi', 'Gohir.D11G186600' => 'ghi', 'Gohir.D12G145575' => 'ghi', 'Gohir.D12G145650' => 'ghi', 'Gohir.D12G145725' => 'ghi', 'Gohir.D12G194050' => 'ghi', 'Gohir.D13G091800' => 'ghi', 'Gorai.001G055900' => 'gra', 'Gorai.007G198400' => 'gra', 'Gorai.008G157000' => 'gra', 'Gorai.008G157100' => 'gra', 'Gorai.008G208700' => 'gra', 'Gorai.010G138700' => 'gra', 'GSVIVG01000977001' => 'vvi', 'GSVIVG01007708001' => 'vvi', 'GSVIVG01008587001' => 'vvi', 'GSVIVG01018849001' => 'vvi', 'GSVIVG01032432001' => 'vvi', 'HanXRQChr02g0034131' => 'han', 'HanXRQChr02g0035981' => 'han', 'HanXRQChr02g0035991' => 'han', 'HanXRQChr05g0155611' => 'han', 'HanXRQChr05g0155621' => 'han', 'HanXRQChr08g0236501' => 'han', 'HanXRQChr09g0261321' => 'han', 'HanXRQChr09g0272081' => 'han', 'HanXRQChr10g0310741' => 'han', 'HanXRQChr11g0325591' => 'han', 'HanXRQChr12g0385691' => 'han', 'HanXRQChr13g0387801' => 'han', 'HanXRQChr15g0463011' => 'han', 'Haze_03826' => 'cav', 'Haze_03827' => 'cav', 'Haze_07183' => 'cav', 'Haze_07537' => 'cav', 'Haze_07539' => 'cav', 'Haze_12461' => 'cav', 'Haze_16115' => 'cav', 'Haze_16808' => 'cav', 'Haze_18531' => 'cav', 'Hma1.2p1_0046F.1_g026700' => 'hma', 'Hma1.2p1_0046F.1_g026710' => 'hma', 'Hma1.2p1_0168F.1_g074340' => 'hma', 'Hma1.2p1_0266F.1_g107030' => 'hma', 'Hma1.2p1_0266F.1_g107060' => 'hma', 'Hma1.2p1_0275F.1_g110510' => 'hma', 'Hma1.2p1_0592F.1_g185490' => 'hma', 'Hma1.2p1_0592F.1_g185500' => 'hma', 'Hma1.2p1_0592F.1_g185510' => 'hma', 'Hma1.2p1_0592F.1_g185520' => 'hma', 'Hma1.2p1_0592F.1_g185530' => 'hma', 'Hma1.2p1_0818F.1_g223450' => 'hma', 'HPP92_009708' => 'vpl', 'HPP92_009793' => 'vpl', 'HPP92_009796' => 'vpl', 'HPP92_009797' => 'vpl', 'HPP92_014940' => 'vpl', 'HPP92_014988' => 'vpl', 'Hund02463' => 'sun', 'Hund02760' => 'sun', 'Hund05071' => 'sun', 'Hund10108' => 'sun', 'Hund11204' => 'sun', 'Hund14016' => 'sun', 'Hund16464' => 'sun', 'Lalb_Chr09g0333391' => 'lal', 'Lalb_Chr11g0070461' => 'lal', 'Lalb_Chr12g0201671' => 'lal', 'Lalb_Chr13g0297161' => 'lal', 'Lj1g0002823' => 'lja', 'Lj3C1074T6' => 'lonja', 'Lj4A212T28' => 'lonja', 'Lj4g0005516' => 'lja', 'Lj4g0013705' => 'lja', 'Lj4g0027865' => 'lja', 'Lj5C92G16' => 'lonja', 'Lj5C92T12' => 'lonja', 'Lj7C596T3' => 'lonja', 'Lj9A446G59' => 'lonja', 'Lj9A482G21' => 'lonja', 'Lsat_1_v5_gn_1_28261' => 'lsa', 'Lsat_1_v5_gn_1_28281' => 'lsa', 'Lsat_1_v5_gn_1_32721' => 'lsa', 'Lsat_1_v5_gn_4_151760' => 'lsa', 'Lsat_1_v5_gn_4_2120' => 'lsa', 'Lsat_1_v5_gn_4_75761' => 'lsa', 'Lsat_1_v5_gn_5_10920' => 'lsa', 'Manes.02G099900' => 'mes', 'Manes.11G096200' => 'mes', 'Manes.12G007200' => 'mes', 'Manes.14G048300' => 'mes', 'Manes.17G114700' => 'mes', 'Mapoly0002s0070' => 'mpo', 'Mapoly0029s0099' => 'mpo', 'MBI07_g24742_MAGBIO' => 'mbi', 'MBI10_g27988_MAGBIO' => 'mbi', 'MBI11_g13057_MAGBIO' => 'mbi', 'MD02G1137200' => 'mdo', 'MD06G1137200' => 'mdo', 'MD07G1122300' => 'mdo', 'MD09G1078200' => 'mdo', 'MD13G1123700' => 'mdo', 'MD14G1151900' => 'mdo', 'MD17G1030900' => 'mdo', 'MD17G1068200' => 'mdo', 'MD17G1068600' => 'mdo', 'Medtr3g077540' => 'mtr', 'Medtr4g105530' => 'mtr', 'Medtr8g076580' => 'mtr', 'Medtr8g076590' => 'mtr', 'Medtr8g096410' => 'mtr', 'MELO3C016411.2' => 'cme', 'MELO3C017780.2' => 'cme', 'MELO3C022560.2' => 'cme', 'MELO3C026187.2' => 'cme', 'MELO3C026286.2' => 'cme', 'MELO3C032854.2' => 'cme', 'Migut.H02495' => 'egut', 'Migut.I00561' => 'egut', 'Migut.K01015' => 'egut', 'Migut.K01016' => 'egut', 'Migut.L00743' => 'egut', 'Migut.L00744' => 'egut', 'Migut.L00746' => 'egut', 'Migut.L00798' => 'egut', 'Migut.L00799' => 'egut', 'Migut.N02096' => 'egut', 'MSTRG.11259' => 'ama', 'MSTRG.23142' => 'ama', 'MSTRG.2499' => 'ama', 'Nitab4.5_0000003g0730' => 'nta', 'Nitab4.5_0000137g0020' => 'nta', 'Nitab4.5_0000721g0210' => 'nta', 'Nitab4.5_0000723g0050' => 'nta', 'Nitab4.5_0000913g0070' => 'nta', 'Nitab4.5_0001332g0040' => 'nta', 'Nitab4.5_0001771g0050' => 'nta', 'Nitab4.5_0001918g0050' => 'nta', 'Nitab4.5_0002686g0030' => 'nta', 'Nitab4.5_0003156g0020' => 'nta', 'Nitab4.5_0003383g0040' => 'nta', 'Nitab4.5_0003918g0010' => 'nta', 'Nitab4.5_0006760g0010' => 'nta', 'Nn1g05981' => 'nnu', 'Nn1g06288' => 'nnu', 'Nn3g16371' => 'nnu', 'Nn3g16786' => 'nnu', 'Nn4g22232' => 'nnu', 'Oeu005144.1' => 'oeu', 'Oeu005145.1' => 'oeu', 'Oeu011348.1' => 'oeu', 'Oeu016415.1' => 'oeu', 'Oeu023501.1' => 'oeu', 'Oeu044473.1' => 'oeu', 'Oeu048892.2' => 'oeu', 'Os01g0549200' => 'osa', 'Os02g0469300' => 'osa', 'Os04g0311100' => 'osa', 'Os06g0474900' => 'osa', 'Os10g0181700' => 'osa', 'Os11g0454800' => 'osa', 'Peaxi162Scf00037g00714' => 'pax', 'Peaxi162Scf00084g01217' => 'pax', 'Peaxi162Scf00257g00217' => 'pax', 'Peaxi162Scf00516g00215' => 'pax', 'Peaxi162Scf00689g00123' => 'pax', 'PGR044G2719' => 'pgr', 'PGR083G1360' => 'pgr', 'PGR102G2849' => 'pgr', 'PGR119G2534' => 'pgr', 'PGSC0003DMG400003538' => 'stu', 'PGSC0003DMG400028138' => 'stu', 'PGSC0003DMG400031732' => 'stu', 'PGSC0003DMG400038165' => 'stu', 'Phvul.002G284600' => 'pvu', 'Phvul.003G258200' => 'pvu', 'Phvul.009G176500' => 'pvu', 'Potri.003G167201' => 'ptr', 'Potri.005G118400' => 'ptr', 'Potri.012G089000' => 'ptr', 'Potri.012G102800' => 'ptr', 'Potri.015G079400' => 'ptr', 'Potri.015G100900' => 'ptr', 'Pp3c14_9810' => 'ppa', 'Pp3c15_10450' => 'ppa', 'Pp3c20_19150' => 'ppa', 'Pp3c23_12740' => 'ppa', 'Pp3c23_6310' => 'ppa', 'Pp3c24_3720' => 'ppa', 'Pp3c27_2580' => 'ppa', 'Pp3c9_8990' => 'ppa', 'PRCOL_00002854' => 'pco', 'Prupe.1G221200' => 'ppe', 'Prupe.3G289000' => 'ppe', 'Prupe.5G147000' => 'ppe', 'Prupe.6G157300' => 'ppe', 'Prupe.7G163400' => 'ppe', 'Psat0s2177g0040' => 'psa', 'Psat3g174760' => 'psa', 'Psat3g192160' => 'psa', 'Psat4g058520' => 'psa', 'Psat4g096840' => 'psa', 'Psat7g037320' => 'psa', 'PSO017G1274' => 'pso', 'PSO017G5166' => 'pso', 'PSO063G4558' => 'pso', 'PSO170G4458' => 'pso', 'PSO170G5005' => 'pso', 'PSO210G6156' => 'pso', 'PSO210G6635' => 'pso', 'PSO210G7397' => 'pso', 'PSO210G7700' => 'pso', 'PSO455G0035' => 'pso', 'PSO455G0180' => 'pso', 'PSO478G4515' => 'pso', 'PSO832G1305' => 'pso', 'PSO832G3489' => 'pso', 'QL02p075247' => 'qlo', 'QL03p051148' => 'qlo', 'QL05p010313' => 'qlo', 'QL06p034627' => 'qlo', 'QL10p001889' => 'qlo', 'QL10p010846' => 'qlo', 'RcHm_v2.0_Chr1g0350621' => 'rch', 'RcHm_v2.0_Chr1g0350641' => 'rch', 'RcHm_v2.0_Chr2g0092891' => 'rch', 'RcHm_v2.0_Chr2g0100251' => 'rch', 'RcHm_v2.0_Chr2g0158661' => 'rch', 'RcHm_v2.0_Chr2g0172741' => 'rch', 'RcHm_v2.0_Chr4g0429571' => 'rch', 'RcHm_v2.0_Chr5g0042471' => 'rch', 'RcHm_v2.0_Chr7g0189451' => 'rch', 'Rhsim08G0052000' => 'rsi', 'Rhsim08G0174400' => 'rsi', 'Rhsim08G0193200' => 'rsi', 'Rhsim10G0214800' => 'rsi', 'Rhsim10G0214900' => 'rsi', 'Rhsim10G0215000' => 'rsi', 'Rhsim12G0022900' => 'rsi', 'Rhsim12G0177500' => 'rsi', 'Rhsim12G0177700' => 'rsi', 'Sabra03G0122600' => 'sbr', 'Sabra05G0097400' => 'sbr', 'Sabra12G0064100' => 'sbr', 'Sabra15G0121300' => 'sbr', 'SalBow2G0642' => 'sbo', 'SalBow5G2667' => 'sbo', 'SalBow5G4873' => 'sbo', 'SalBow8G2395' => 'sbo', 'Sc03g0003290' => 'sci', 'Sc10g0010130' => 'sci', 'Sc22g0003650' => 'sci', 'Sed0001603' => 'sed', 'Sed0004259' => 'sed', 'Sed0006789' => 'sed', 'Sed0011838' => 'sed', 'Sed0012964' => 'sed', 'Sed0016383' => 'sed', 'Sed0019010' => 'sed', 'Sed0020188' => 'sed', 'SEGI_04702' => 'sgi', 'SEGI_17231' => 'sgi', 'SEGI_18877' => 'sgi', 'SEGI_25196' => 'sgi', 'SEGI_25515' => 'sgi', 'SEGI_28445' => 'sgi', 'SEGI_37452' => 'sgi', 'SGA_v2.0_scaffold188G40336' => 'sas', 'SGA_v2.0_scaffold228G43247' => 'sas', 'SGA_v2.0_scaffold280G46853' => 'sas', 'SGA_v2.0_scaffold34G13808' => 'sas', 'SGA_v2.0_scaffold40G15576' => 'sas', 'SGA_v2.0_scaffold611G53188' => 'sas', 'SGA_v2.0_scaffold78G25461' => 'sas', 'SGA_v2.0_scaffold90G27888' => 'sas', 'SHI08601' => 'shi', 'SHI08606' => 'shi', 'SHI17117' => 'shi', 'SHI17119' => 'shi', 'SMO118G0201' => 'smo', 'SMO169G0247' => 'smo', 'SMO176G0006' => 'smo', 'SMO176G0015' => 'smo', 'SMO202G0006' => 'smo', 'SMO240G0050' => 'smo', 'SMO286G0009' => 'smo', 'SMO338G0033' => 'smo', 'SMO356G0533' => 'smo', 'SMO364G0382' => 'smo', 'SMO367G0166' => 'smo', 'SMO367G1098' => 'smo', 'Solyc01g009920.3' => 'sly', 'Solyc01g099300.3' => 'sly', 'Solyc02g084700.3' => 'sly', 'Solyc03g097520.3' => 'sly', 'Solyc06g071580.3' => 'sly', 'Solyc10g081760.3' => 'sly', 'Sopen01g005480' => 'spe', 'Sopen01g042850' => 'spe', 'Sopen02g029370' => 'spe', 'Sopen03g028280' => 'spe', 'Sopen06g027870' => 'spe', 'Sopen10g032270' => 'spe', 'Sp5g18180' => 'spa', 'Sp6g12880' => 'spa', 'Sp6g30850' => 'spa', 'Sp7g22960' => 'spa', 'Sp7g34010' => 'spa', 'SpUn1326_0010' => 'spa', 'TAR371G0242' => 'tar', 'TAR622G0638' => 'tar', 'TAR628G1548' => 'tar', 'TAR629G1079' => 'tar', 'TAR629G3413' => 'tar', 'THA.LOC104804249' => 'tha', 'THA.LOC104808315' => 'tha', 'THA.LOC104809238' => 'tha', 'THA.LOC104825484' => 'tha', 'Thecc.01G025500' => 'tca', 'Thecc.03G015800' => 'tca', 'Thecc.03G018000' => 'tca', 'Thecc.03G134800' => 'tca', 'Thecc.04G014700' => 'tca', 'Thhalv10006991m.g' => 'esa', 'Thhalv10012707m.g' => 'esa', 'Thhalv10015739m.g' => 'esa', 'Thhalv10024553m.g' => 'esa', 'Thhalv10024673m.g' => 'esa', 'Thhalv10029187m.g' => 'esa', 'TPR.G12971' => 'tpr', 'TPR.G29396' => 'tpr', 'TPR.G33376' => 'tpr', 'TPR.G35508' => 'tpr', 'TPR.G35516' => 'tpr', 'TPR.G37317' => 'tpr', 'TPR.G37389' => 'tpr', 'TPR.G37523' => 'tpr', 'TPR.G559' => 'tpr', 'TWI14G0070' => 'twi', 'TWI14G0729' => 'twi', 'TWI18G0596' => 'twi', 'TWI39G0780' => 'twi', 'TWI39G0850' => 'twi', 'TWI73G1052' => 'twi', 'unitig_52.g17485' => 'ugi', 'unitig_61.g26355' => 'ugi', 'vmacro01040' => 'vma', 'vmacro16731' => 'vma', 'vmacro18270' => 'vma', 'vmacro19142' => 'vma', 'vmacro19407' => 'vma', 'vmacro19408' => 'vma', 'vmacro21899' => 'vma', 'vmacro21900' => 'vma', 'vmacro21901' => 'vma', 'VMungo0251G0490' => 'vmu', 'VMungo0251G1748' => 'vmu', 'VMungo1309G0421' => 'vmu', 'Zm00001eb086500' => 'zma', 'Zm00001eb150680' => 'zma', 'Zm00001eb162330' => 'zma', 'Zm00001eb203130' => 'zma', 'Zm00001eb369480' => 'zma', 'Zm00001eb382340' => 'zma', 'Zm00001eb416360' => 'zma' ), 'gf_id' => 'HOM05D000902', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000902' ), 'data_identifier' => 'HOM05D000902', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000902', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '663', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02470' => 'bna', 'A01p16260' => 'bna', 'A02p01680' => 'bna', 'A03p16600' => 'bna', 'A03p55660' => 'bna', 'A03p64160' => 'bna', 'A03p64170' => 'bna', 'A08p31900' => 'bna', 'A09p59530' => 'bna', 'A10p08230' => 'bna', 'A10p25090' => 'bna', 'Aa31LG3G7100' => 'aar', 'Aa31LG3G7110' => 'aar', 'Aa31LG6G13160' => 'aar', 'Aa31LG7G10770' => 'aar', 'Aa31LG7G3830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2723' => 'aag', 'Actinidia08045' => 'ach', 'Actinidia08888' => 'ach', 'Actinidia18333' => 'ach', 'Actinidia19334' => 'ach', 'Actinidia25552' => 'ach', 'Actinidia26089' => 'ach', 'Actinidia30615' => 'ach', 'Actinidia30616' => 'ach', 'Actinidia33083' => 'ach', 'Actinidia35762' => 'ach', 'Ah.02g110620' => 'amhyb', 'Ah.11g046390' => 'amhyb', 'AL1G31670' => 'aly', 'AL6G23730' => 'aly', 'AL7G14740' => 'aly', 'AL7G14750' => 'aly', 'AL7G14760' => 'aly', 'AL7G28220' => 'aly', 'AL8G24940' => 'aly', 'Aqoxy3G01665' => 'aox', 'Aqoxy3G02853' => 'aox', 'Aqoxy5G01513' => 'aox', 'Aqoxy5G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8SKA4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ75LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKDA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0LJZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7REX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZP4YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWX7I5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2QKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS0L9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPCD8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q161UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC7XCF' => 'arhy', 'AT1G19100' => 'ath', 'AT4G24970' => 'ath', 'AT4G36270' => 'ath', 'AT4G36280' => 'ath', 'AT4G36290' => 'ath', 'AT5G13130' => 'ath', 'AT5G50780' => 'ath', 'ATR0582G266' => 'atr', 'ATR0661G195' => 'atr', 'ATR1152G031' => 'atr', 'Atru.chr11.2382' => 'acertr', 'Atru.chr12.2337' => 'acertr', 'Atru.chr3.744' => 'acertr', 'Atru.chr6.1870' => 'acertr', 'Atru.chr9.2515' => 'acertr', 'AUR62004120' => 'cqu', 'AUR62005667' => 'cqu', 'AUR62007634' => 'cqu', 'AUR62008186' => 'cqu', 'AUR62008187' => 'cqu', 'AUR62008188' => 'cqu', 'AUR62027954' => 'cqu', 'AUR62028766' => 'cqu', 'AUR62028767' => 'cqu', 'AUR62028768' => 'cqu', 'AUR62028886' => 'cqu', 'AUR62029563' => 'cqu', 'AUR62038832' => 'cqu', 'BcaB01g04149' => 'bca', 'BcaB03g12940' => 'bca', 'BcaB03g13090' => 'bca', 'BcaB03g14466' => 'bca', 'BcaB05g24035' => 'bca', 'BcaC01g06050' => 'bca', 'BcaC04g19148' => 'bca', 'BcaC04g20761' => 'bca', 'BcaC06g32845' => 'bca', 'BcaC07g41274' => 'bca', 'BcaC09g50827' => 'bca', 'BcaNung00741' => 'bca', 'BcaNung00742' => 'bca', 'BcaNung01859' => 'bca', 'BcaNung03985' => 'bca', 'BcaNung03989' => 'bca', 'BcaNung05661' => 'bca', 'BolC1t00257H' => 'bol', 'BolC1t01956H' => 'bol', 'BolC2t06534H' => 'bol', 'BolC3t14334H' => 'bol', 'BolC5t30451H' => 'bol', 'BolC7t45880H' => 'bol', 'BolC7t46586H' => 'bol', 'BolC8t49301H' => 'bol', 'BolC8t51837H' => 'bol', 'BolC9t56822H' => 'bol', 'BolC9t59235H' => 'bol', 'BraA01t00234Z' => 'bra', 'BraA01t01563Z' => 'bra', 'BraA02t05147Z' => 'bra', 'BraA03t10947Z' => 'bra', 'BraA03t14633Z' => 'bra', 'BraA08t35112Z' => 'bra', 'BraA09t41330Z' => 'bra', 'BraA10t44570Z' => 'bra', 'C01p02670' => 'bna', 'C01p20260' => 'bna', 'C02p05890' => 'bna', 'C03p19530' => 'bna', 'C05p17470' => 'bna', 'C07p53900' => 'bna', 'C07p61630' => 'bna', 'C08p16800' => 'bna', 'C08p42810' => 'bna', 'C09p39480' => 'bna', 'C09p63980' => 'bna', 'CAN.G1001.7' => 'can', 'CAN.G1034.55' => 'can', 'CAN.G143.7' => 'can', 'CAN.G3340.1' => 'can', 'CAN.G358.19' => 'can', 'CAN.G373.2' => 'can', 'CAN.G674.16' => 'can', 'CAN.G674.17' => 'can', 'CAN.G674.18' => 'can', 'CAN.G732.2' => 'can', 'CAN.G732.3' => 'can', 'CAN.G993.39' => 'can', 'CANSAT01G2052' => 'cansat', 'CANSAT80G0070' => 'cansat', 'CANSAT80G0483' => 'cansat', 'CANSAT80G0625' => 'cansat', 'CARHR019690' => 'chi', 'CARHR080280' => 'chi', 'CARHR152750' => 'chi', 'CARHR152760' => 'chi', 'CARHR152770' => 'chi', 'CARHR200340' => 'chi', 'CARHR232370' => 'chi', 'CARHR244670' => 'chi', 'CARHR244680' => 'chi', 'CARHR257520' => 'chi', 'Carub.0001s1872' => 'cru', 'Carub.0006s1130' => 'cru', 'Carub.0007s0396' => 'cru', 'Carub.0007s0397' => 'cru', 'Carub.0007s1608' => 'cru', 'Carub.0008s1068' => 'cru', 'Carub.0008s1077' => 'cru', 'Ca_16158_v3' => 'car', 'Ca_17571_v3' => 'car', 'Ca_21936_v3' => 'car', 'Ca_22350_v3' => 'car', 'CBR_g22445' => 'cbr', 'CBR_g26290' => 'cbr', 'Cc04_g09610' => 'ccan', 'Cc04_g12280' => 'ccan', 'Cc07_g10230' => 'ccan', 'CDE02G0093' => 'cde', 'CDE02G0701' => 'cde', 'CDE04G1050' => 'cde', 'CDE05G1833' => 'cde', 'CDE05G3058' => 'cde', 'CDE05G3380' => 'cde', 'CDE06G0536' => 'cde', 'Cfa006923' => 'cfa', 'Cfa009402' => 'cfa', 'Cfa018751' => 'cfa', 'Cfa019164' => 'cfa', 'Cfa022935' => 'cfa', 'Ciclev10019081m.g' => 'ccl', 'Ciclev10025076m.g' => 'ccl', 'Ciclev10030712m.g' => 'ccl', 'Ciclev10033760m.g' => 'ccl', 'CiPaw.05G105600' => 'cil', 'CiPaw.08G136700' => 'cil', 'CiPaw.11G003900' => 'cil', 'CiPaw.11G023700' => 'cil', 'CiPaw.12G003700' => 'cil', 'ClCG06G017100' => 'cla', 'ClCG06G018110' => 'cla', 'ClCG07G008800' => 'cla', 'ClCG07G015330' => 'cla', 'COL.COLO4_13698' => 'col', 'COL.COLO4_16659' => 'col', 'COL.COLO4_21986' => 'col', 'COL.COLO4_24049' => 'col', 'COL.COLO4_29061' => 'col', 'COL.COLO4_29075' => 'col', 'COL.COLO4_30094' => 'col', 'Cpa.g.c33689' => 'cpa', 'Cpa.g.sc108.39' => 'cpa', 'Cpa.g.sc108.41' => 'cpa', 'Cpa.g.sc1163.1' => 'cpa', 'Cpa.g.sc4.155' => 'cpa', 'Cpa.g.sc6.194' => 'cpa', 'CsaV3_1G000340' => 'csa', 'CsaV3_1G001400' => 'csa', 'CsaV3_4G002220' => 'csa', 'CsaV3_4G005370' => 'csa', 'CSS0007487' => 'camsi', 'CSS0008066' => 'camsi', 'CSS0009120' => 'camsi', 'CSS0015512' => 'camsi', 'CSS0022409' => 'camsi', 'CSS0025358' => 'camsi', 'CSS0044547' => 'camsi', 'DCAR_013057' => 'dca', 'DCAR_015058' => 'dca', 'DCAR_016027' => 'dca', 'DCAR_017327' => 'dca', 'DCAR_020743' => 'dca', 'DCAR_026157' => 'dca', 'DCAR_032339' => 'dca', 'DCAR_032340' => 'dca', 'Dinv11200' => 'din', 'Dinv11201' => 'din', 'Dinv20631' => 'din', 'Dinv23182' => 'din', 'Dinv33466' => 'din', 'Dinv33583' => 'din', 'Dinv38565' => 'din', 'Duzib068G0200' => 'dzi', 'Duzib147G0132' => 'dzi', 'Duzib147G0635' => 'dzi', 'Duzib205G1670' => 'dzi', 'Duzib251G0606' => 'dzi', 'ECA232G3336' => 'eca', 'ECA232G3763' => 'eca', 'ECA232G4845' => 'eca', 'ECA234G1607' => 'eca', 'ECA246G0932' => 'eca', 'ECA247G0781' => 'eca', 'ECA247G1932' => 'eca', 'ECA247G2079' => 'eca', 'ECA247G3338' => 'eca', 'ECA247G4115' => 'eca', 'EL10Ac3g06552' => 'bvu', 'EL10Ac5g10721' => 'bvu', 'EL10Ac5g10722' => 'bvu', 'EL10Ac5g10723' => 'bvu', 'EL10Ac5g11361' => 'bvu', 'EL10Ac6g13553' => 'bvu', 'EL10As8g23872' => 'bvu', 'Eucgr.B00250' => 'egr', 'Eucgr.B00251' => 'egr', 'Eucgr.B03533' => 'egr', 'Eucgr.I02381' => 'egr', 'Eucgr.K02700' => 'egr', 'FAN02G0174' => 'fan', 'FAN02G3146' => 'fan', 'FAN04G1672' => 'fan', 'FAN04G2273' => 'fan', 'FAN05G2791' => 'fan', 'FAN05G4035' => 'fan', 'FAN07G0834' => 'fan', 'FAN08G1198' => 'fan', 'FAN09G4182' => 'fan', 'FAN12G0496' => 'fan', 'FAN13G1027' => 'fan', 'FAN13G2951' => 'fan', 'FAN14G0705' => 'fan', 'FAN14G0720' => 'fan', 'FAN17G0201' => 'fan', 'FAN17G2665' => 'fan', 'FAN18G1456' => 'fan', 'FAN18G1525' => 'fan', 'FAN18G3500' => 'fan', 'FAN28G2670' => 'fan', 'FvH4_1g12391' => 'fve', 'FvH4_4g23220' => 'fve', 'FvH4_5g08810' => 'fve', 'FvH4_5g28960' => 'fve', 'FvH4_6g42820' => 'fve', 'FvH4_6g51110' => 'fve', 'Glyma.02G051802' => 'gma', 'Glyma.04G185300' => 'gma', 'Glyma.05G202900' => 'gma', 'Glyma.08G010300' => 'gma', 'Glyma.16G131900' => 'gma', 'Glyma.17G087900' => 'gma', 'Gohir.A07G048600' => 'ghi', 'Gohir.A11G179000' => 'ghi', 'Gohir.A12G140900' => 'ghi', 'Gohir.A12G140950' => 'ghi', 'Gohir.A12G191700' => 'ghi', 'Gohir.A13G086300' => 'ghi', 'Gohir.D07G052900' => 'ghi', 'Gohir.D11G186600' => 'ghi', 'Gohir.D12G145575' => 'ghi', 'Gohir.D12G145650' => 'ghi', 'Gohir.D12G145725' => 'ghi', 'Gohir.D12G194050' => 'ghi', 'Gohir.D13G091800' => 'ghi', 'Gorai.001G055900' => 'gra', 'Gorai.007G198400' => 'gra', 'Gorai.008G157000' => 'gra', 'Gorai.008G157100' => 'gra', 'Gorai.008G208700' => 'gra', 'Gorai.010G138700' => 'gra', 'GSVIVG01000977001' => 'vvi', 'GSVIVG01007708001' => 'vvi', 'GSVIVG01008587001' => 'vvi', 'GSVIVG01018849001' => 'vvi', 'GSVIVG01032432001' => 'vvi', 'HanXRQChr02g0034131' => 'han', 'HanXRQChr02g0035981' => 'han', 'HanXRQChr02g0035991' => 'han', 'HanXRQChr05g0155611' => 'han', 'HanXRQChr05g0155621' => 'han', 'HanXRQChr08g0236501' => 'han', 'HanXRQChr09g0261321' => 'han', 'HanXRQChr09g0272081' => 'han', 'HanXRQChr10g0310741' => 'han', 'HanXRQChr11g0325591' => 'han', 'HanXRQChr12g0385691' => 'han', 'HanXRQChr13g0387801' => 'han', 'HanXRQChr15g0463011' => 'han', 'Haze_03826' => 'cav', 'Haze_03827' => 'cav', 'Haze_07183' => 'cav', 'Haze_07537' => 'cav', 'Haze_07539' => 'cav', 'Haze_12461' => 'cav', 'Haze_16115' => 'cav', 'Haze_16808' => 'cav', 'Haze_18531' => 'cav', 'Hma1.2p1_0046F.1_g026700' => 'hma', 'Hma1.2p1_0046F.1_g026710' => 'hma', 'Hma1.2p1_0168F.1_g074340' => 'hma', 'Hma1.2p1_0266F.1_g107030' => 'hma', 'Hma1.2p1_0266F.1_g107060' => 'hma', 'Hma1.2p1_0275F.1_g110510' => 'hma', 'Hma1.2p1_0592F.1_g185490' => 'hma', 'Hma1.2p1_0592F.1_g185500' => 'hma', 'Hma1.2p1_0592F.1_g185510' => 'hma', 'Hma1.2p1_0592F.1_g185520' => 'hma', 'Hma1.2p1_0592F.1_g185530' => 'hma', 'Hma1.2p1_0818F.1_g223450' => 'hma', 'HPP92_009708' => 'vpl', 'HPP92_009793' => 'vpl', 'HPP92_009796' => 'vpl', 'HPP92_009797' => 'vpl', 'HPP92_014940' => 'vpl', 'HPP92_014988' => 'vpl', 'Hund02463' => 'sun', 'Hund02760' => 'sun', 'Hund05071' => 'sun', 'Hund10108' => 'sun', 'Hund11204' => 'sun', 'Hund14016' => 'sun', 'Hund16464' => 'sun', 'Lalb_Chr09g0333391' => 'lal', 'Lalb_Chr11g0070461' => 'lal', 'Lalb_Chr12g0201671' => 'lal', 'Lalb_Chr13g0297161' => 'lal', 'Lj1g0002823' => 'lja', 'Lj3C1074T6' => 'lonja', 'Lj4A212T28' => 'lonja', 'Lj4g0005516' => 'lja', 'Lj4g0013705' => 'lja', 'Lj4g0027865' => 'lja', 'Lj5C92G16' => 'lonja', 'Lj5C92T12' => 'lonja', 'Lj7C596T3' => 'lonja', 'Lj9A446G59' => 'lonja', 'Lj9A482G21' => 'lonja', 'Lsat_1_v5_gn_1_28261' => 'lsa', 'Lsat_1_v5_gn_1_28281' => 'lsa', 'Lsat_1_v5_gn_1_32721' => 'lsa', 'Lsat_1_v5_gn_4_151760' => 'lsa', 'Lsat_1_v5_gn_4_2120' => 'lsa', 'Lsat_1_v5_gn_4_75761' => 'lsa', 'Lsat_1_v5_gn_5_10920' => 'lsa', 'Manes.02G099900' => 'mes', 'Manes.11G096200' => 'mes', 'Manes.12G007200' => 'mes', 'Manes.14G048300' => 'mes', 'Manes.17G114700' => 'mes', 'Mapoly0002s0070' => 'mpo', 'Mapoly0029s0099' => 'mpo', 'MBI07_g24742_MAGBIO' => 'mbi', 'MBI10_g27988_MAGBIO' => 'mbi', 'MBI11_g13057_MAGBIO' => 'mbi', 'MD02G1137200' => 'mdo', 'MD06G1137200' => 'mdo', 'MD07G1122300' => 'mdo', 'MD09G1078200' => 'mdo', 'MD13G1123700' => 'mdo', 'MD14G1151900' => 'mdo', 'MD17G1030900' => 'mdo', 'MD17G1068200' => 'mdo', 'MD17G1068600' => 'mdo', 'Medtr3g077540' => 'mtr', 'Medtr4g105530' => 'mtr', 'Medtr8g076580' => 'mtr', 'Medtr8g076590' => 'mtr', 'Medtr8g096410' => 'mtr', 'MELO3C016411.2' => 'cme', 'MELO3C017780.2' => 'cme', 'MELO3C022560.2' => 'cme', 'MELO3C026187.2' => 'cme', 'MELO3C026286.2' => 'cme', 'MELO3C032854.2' => 'cme', 'Migut.H02495' => 'egut', 'Migut.I00561' => 'egut', 'Migut.K01015' => 'egut', 'Migut.K01016' => 'egut', 'Migut.L00743' => 'egut', 'Migut.L00744' => 'egut', 'Migut.L00746' => 'egut', 'Migut.L00798' => 'egut', 'Migut.L00799' => 'egut', 'Migut.N02096' => 'egut', 'MSTRG.11259' => 'ama', 'MSTRG.23142' => 'ama', 'MSTRG.2499' => 'ama', 'Nitab4.5_0000003g0730' => 'nta', 'Nitab4.5_0000137g0020' => 'nta', 'Nitab4.5_0000721g0210' => 'nta', 'Nitab4.5_0000723g0050' => 'nta', 'Nitab4.5_0000913g0070' => 'nta', 'Nitab4.5_0001332g0040' => 'nta', 'Nitab4.5_0001771g0050' => 'nta', 'Nitab4.5_0001918g0050' => 'nta', 'Nitab4.5_0002686g0030' => 'nta', 'Nitab4.5_0003156g0020' => 'nta', 'Nitab4.5_0003383g0040' => 'nta', 'Nitab4.5_0003918g0010' => 'nta', 'Nitab4.5_0006760g0010' => 'nta', 'Nn1g05981' => 'nnu', 'Nn1g06288' => 'nnu', 'Nn3g16371' => 'nnu', 'Nn3g16786' => 'nnu', 'Nn4g22232' => 'nnu', 'Oeu005144.1' => 'oeu', 'Oeu005145.1' => 'oeu', 'Oeu011348.1' => 'oeu', 'Oeu016415.1' => 'oeu', 'Oeu023501.1' => 'oeu', 'Oeu044473.1' => 'oeu', 'Oeu048892.2' => 'oeu', 'Os01g0549200' => 'osa', 'Os02g0469300' => 'osa', 'Os04g0311100' => 'osa', 'Os06g0474900' => 'osa', 'Os10g0181700' => 'osa', 'Os11g0454800' => 'osa', 'Peaxi162Scf00037g00714' => 'pax', 'Peaxi162Scf00084g01217' => 'pax', 'Peaxi162Scf00257g00217' => 'pax', 'Peaxi162Scf00516g00215' => 'pax', 'Peaxi162Scf00689g00123' => 'pax', 'PGR044G2719' => 'pgr', 'PGR083G1360' => 'pgr', 'PGR102G2849' => 'pgr', 'PGR119G2534' => 'pgr', 'PGSC0003DMG400003538' => 'stu', 'PGSC0003DMG400028138' => 'stu', 'PGSC0003DMG400031732' => 'stu', 'PGSC0003DMG400038165' => 'stu', 'Phvul.002G284600' => 'pvu', 'Phvul.003G258200' => 'pvu', 'Phvul.009G176500' => 'pvu', 'Potri.003G167201' => 'ptr', 'Potri.005G118400' => 'ptr', 'Potri.012G089000' => 'ptr', 'Potri.012G102800' => 'ptr', 'Potri.015G079400' => 'ptr', 'Potri.015G100900' => 'ptr', 'Pp3c14_9810' => 'ppa', 'Pp3c15_10450' => 'ppa', 'Pp3c20_19150' => 'ppa', 'Pp3c23_12740' => 'ppa', 'Pp3c23_6310' => 'ppa', 'Pp3c24_3720' => 'ppa', 'Pp3c27_2580' => 'ppa', 'Pp3c9_8990' => 'ppa', 'PRCOL_00002854' => 'pco', 'Prupe.1G221200' => 'ppe', 'Prupe.3G289000' => 'ppe', 'Prupe.5G147000' => 'ppe', 'Prupe.6G157300' => 'ppe', 'Prupe.7G163400' => 'ppe', 'Psat0s2177g0040' => 'psa', 'Psat3g174760' => 'psa', 'Psat3g192160' => 'psa', 'Psat4g058520' => 'psa', 'Psat4g096840' => 'psa', 'Psat7g037320' => 'psa', 'PSO017G1274' => 'pso', 'PSO017G5166' => 'pso', 'PSO063G4558' => 'pso', 'PSO170G4458' => 'pso', 'PSO170G5005' => 'pso', 'PSO210G6156' => 'pso', 'PSO210G6635' => 'pso', 'PSO210G7397' => 'pso', 'PSO210G7700' => 'pso', 'PSO455G0035' => 'pso', 'PSO455G0180' => 'pso', 'PSO478G4515' => 'pso', 'PSO832G1305' => 'pso', 'PSO832G3489' => 'pso', 'QL02p075247' => 'qlo', 'QL03p051148' => 'qlo', 'QL05p010313' => 'qlo', 'QL06p034627' => 'qlo', 'QL10p001889' => 'qlo', 'QL10p010846' => 'qlo', 'RcHm_v2.0_Chr1g0350621' => 'rch', 'RcHm_v2.0_Chr1g0350641' => 'rch', 'RcHm_v2.0_Chr2g0092891' => 'rch', 'RcHm_v2.0_Chr2g0100251' => 'rch', 'RcHm_v2.0_Chr2g0158661' => 'rch', 'RcHm_v2.0_Chr2g0172741' => 'rch', 'RcHm_v2.0_Chr4g0429571' => 'rch', 'RcHm_v2.0_Chr5g0042471' => 'rch', 'RcHm_v2.0_Chr7g0189451' => 'rch', 'Rhsim08G0052000' => 'rsi', 'Rhsim08G0174400' => 'rsi', 'Rhsim08G0193200' => 'rsi', 'Rhsim10G0214800' => 'rsi', 'Rhsim10G0214900' => 'rsi', 'Rhsim10G0215000' => 'rsi', 'Rhsim12G0022900' => 'rsi', 'Rhsim12G0177500' => 'rsi', 'Rhsim12G0177700' => 'rsi', 'Sabra03G0122600' => 'sbr', 'Sabra05G0097400' => 'sbr', 'Sabra12G0064100' => 'sbr', 'Sabra15G0121300' => 'sbr', 'SalBow2G0642' => 'sbo', 'SalBow5G2667' => 'sbo', 'SalBow5G4873' => 'sbo', 'SalBow8G2395' => 'sbo', 'Sc03g0003290' => 'sci', 'Sc10g0010130' => 'sci', 'Sc22g0003650' => 'sci', 'Sed0001603' => 'sed', 'Sed0004259' => 'sed', 'Sed0006789' => 'sed', 'Sed0011838' => 'sed', 'Sed0012964' => 'sed', 'Sed0016383' => 'sed', 'Sed0019010' => 'sed', 'Sed0020188' => 'sed', 'SEGI_04702' => 'sgi', 'SEGI_17231' => 'sgi', 'SEGI_18877' => 'sgi', 'SEGI_25196' => 'sgi', 'SEGI_25515' => 'sgi', 'SEGI_28445' => 'sgi', 'SEGI_37452' => 'sgi', 'SGA_v2.0_scaffold188G40336' => 'sas', 'SGA_v2.0_scaffold228G43247' => 'sas', 'SGA_v2.0_scaffold280G46853' => 'sas', 'SGA_v2.0_scaffold34G13808' => 'sas', 'SGA_v2.0_scaffold40G15576' => 'sas', 'SGA_v2.0_scaffold611G53188' => 'sas', 'SGA_v2.0_scaffold78G25461' => 'sas', 'SGA_v2.0_scaffold90G27888' => 'sas', 'SHI08601' => 'shi', 'SHI08606' => 'shi', 'SHI17117' => 'shi', 'SHI17119' => 'shi', 'SMO118G0201' => 'smo', 'SMO169G0247' => 'smo', 'SMO176G0006' => 'smo', 'SMO176G0015' => 'smo', 'SMO202G0006' => 'smo', 'SMO240G0050' => 'smo', 'SMO286G0009' => 'smo', 'SMO338G0033' => 'smo', 'SMO356G0533' => 'smo', 'SMO364G0382' => 'smo', 'SMO367G0166' => 'smo', 'SMO367G1098' => 'smo', 'Solyc01g009920.3' => 'sly', 'Solyc01g099300.3' => 'sly', 'Solyc02g084700.3' => 'sly', 'Solyc03g097520.3' => 'sly', 'Solyc06g071580.3' => 'sly', 'Solyc10g081760.3' => 'sly', 'Sopen01g005480' => 'spe', 'Sopen01g042850' => 'spe', 'Sopen02g029370' => 'spe', 'Sopen03g028280' => 'spe', 'Sopen06g027870' => 'spe', 'Sopen10g032270' => 'spe', 'Sp5g18180' => 'spa', 'Sp6g12880' => 'spa', 'Sp6g30850' => 'spa', 'Sp7g22960' => 'spa', 'Sp7g34010' => 'spa', 'SpUn1326_0010' => 'spa', 'TAR371G0242' => 'tar', 'TAR622G0638' => 'tar', 'TAR628G1548' => 'tar', 'TAR629G1079' => 'tar', 'TAR629G3413' => 'tar', 'THA.LOC104804249' => 'tha', 'THA.LOC104808315' => 'tha', 'THA.LOC104809238' => 'tha', 'THA.LOC104825484' => 'tha', 'Thecc.01G025500' => 'tca', 'Thecc.03G015800' => 'tca', 'Thecc.03G018000' => 'tca', 'Thecc.03G134800' => 'tca', 'Thecc.04G014700' => 'tca', 'Thhalv10006991m.g' => 'esa', 'Thhalv10012707m.g' => 'esa', 'Thhalv10015739m.g' => 'esa', 'Thhalv10024553m.g' => 'esa', 'Thhalv10024673m.g' => 'esa', 'Thhalv10029187m.g' => 'esa', 'TPR.G12971' => 'tpr', 'TPR.G29396' => 'tpr', 'TPR.G33376' => 'tpr', 'TPR.G35508' => 'tpr', 'TPR.G35516' => 'tpr', 'TPR.G37317' => 'tpr', 'TPR.G37389' => 'tpr', 'TPR.G37523' => 'tpr', 'TPR.G559' => 'tpr', 'TWI14G0070' => 'twi', 'TWI14G0729' => 'twi', 'TWI18G0596' => 'twi', 'TWI39G0780' => 'twi', 'TWI39G0850' => 'twi', 'TWI73G1052' => 'twi', 'unitig_52.g17485' => 'ugi', 'unitig_61.g26355' => 'ugi', 'vmacro01040' => 'vma', 'vmacro16731' => 'vma', 'vmacro18270' => 'vma', 'vmacro19142' => 'vma', 'vmacro19407' => 'vma', 'vmacro19408' => 'vma', 'vmacro21899' => 'vma', 'vmacro21900' => 'vma', 'vmacro21901' => 'vma', 'VMungo0251G0490' => 'vmu', 'VMungo0251G1748' => 'vmu', 'VMungo1309G0421' => 'vmu', 'Zm00001eb086500' => 'zma', 'Zm00001eb150680' => 'zma', 'Zm00001eb162330' => 'zma', 'Zm00001eb203130' => 'zma', 'Zm00001eb369480' => 'zma', 'Zm00001eb382340' => 'zma', 'Zm00001eb416360' => 'zma' ) $gf_id = 'HOM05D000902' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000902' ) $data_identifier = 'HOM05D000902' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 13, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 10, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 6, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 9, 'hma' => (int) 12, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 4, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 6, 'ppa' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 6, 'rch' => (int) 9, 'rsi' => (int) 9, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 12, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 3, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416360' $species_info = array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ) $local_species = 'cbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000902', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '663', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02470' => 'bna', 'A01p16260' => 'bna', 'A02p01680' => 'bna', 'A03p16600' => 'bna', 'A03p55660' => 'bna', 'A03p64160' => 'bna', 'A03p64170' => 'bna', 'A08p31900' => 'bna', 'A09p59530' => 'bna', 'A10p08230' => 'bna', 'A10p25090' => 'bna', 'Aa31LG3G7100' => 'aar', 'Aa31LG3G7110' => 'aar', 'Aa31LG6G13160' => 'aar', 'Aa31LG7G10770' => 'aar', 'Aa31LG7G3830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2723' => 'aag', 'Actinidia08045' => 'ach', 'Actinidia08888' => 'ach', 'Actinidia18333' => 'ach', 'Actinidia19334' => 'ach', 'Actinidia25552' => 'ach', 'Actinidia26089' => 'ach', 'Actinidia30615' => 'ach', 'Actinidia30616' => 'ach', 'Actinidia33083' => 'ach', 'Actinidia35762' => 'ach', 'Ah.02g110620' => 'amhyb', 'Ah.11g046390' => 'amhyb', 'AL1G31670' => 'aly', 'AL6G23730' => 'aly', 'AL7G14740' => 'aly', 'AL7G14750' => 'aly', 'AL7G14760' => 'aly', 'AL7G28220' => 'aly', 'AL8G24940' => 'aly', 'Aqoxy3G01665' => 'aox', 'Aqoxy3G02853' => 'aox', 'Aqoxy5G01513' => 'aox', 'Aqoxy5G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8SKA4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ75LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKDA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0LJZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7REX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZP4YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWX7I5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2QKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS0L9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPCD8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q161UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC7XCF' => 'arhy', 'AT1G19100' => 'ath', 'AT4G24970' => 'ath', 'AT4G36270' => 'ath', 'AT4G36280' => 'ath', 'AT4G36290' => 'ath', 'AT5G13130' => 'ath', 'AT5G50780' => 'ath', 'ATR0582G266' => 'atr', 'ATR0661G195' => 'atr', 'ATR1152G031' => 'atr', 'Atru.chr11.2382' => 'acertr', 'Atru.chr12.2337' => 'acertr', 'Atru.chr3.744' => 'acertr', 'Atru.chr6.1870' => 'acertr', 'Atru.chr9.2515' => 'acertr', 'AUR62004120' => 'cqu', 'AUR62005667' => 'cqu', 'AUR62007634' => 'cqu', 'AUR62008186' => 'cqu', 'AUR62008187' => 'cqu', 'AUR62008188' => 'cqu', 'AUR62027954' => 'cqu', 'AUR62028766' => 'cqu', 'AUR62028767' => 'cqu', 'AUR62028768' => 'cqu', 'AUR62028886' => 'cqu', 'AUR62029563' => 'cqu', 'AUR62038832' => 'cqu', 'BcaB01g04149' => 'bca', 'BcaB03g12940' => 'bca', 'BcaB03g13090' => 'bca', 'BcaB03g14466' => 'bca', 'BcaB05g24035' => 'bca', 'BcaC01g06050' => 'bca', 'BcaC04g19148' => 'bca', 'BcaC04g20761' => 'bca', 'BcaC06g32845' => 'bca', 'BcaC07g41274' => 'bca', 'BcaC09g50827' => 'bca', 'BcaNung00741' => 'bca', 'BcaNung00742' => 'bca', 'BcaNung01859' => 'bca', 'BcaNung03985' => 'bca', 'BcaNung03989' => 'bca', 'BcaNung05661' => 'bca', 'BolC1t00257H' => 'bol', 'BolC1t01956H' => 'bol', 'BolC2t06534H' => 'bol', 'BolC3t14334H' => 'bol', 'BolC5t30451H' => 'bol', 'BolC7t45880H' => 'bol', 'BolC7t46586H' => 'bol', 'BolC8t49301H' => 'bol', 'BolC8t51837H' => 'bol', 'BolC9t56822H' => 'bol', 'BolC9t59235H' => 'bol', 'BraA01t00234Z' => 'bra', 'BraA01t01563Z' => 'bra', 'BraA02t05147Z' => 'bra', 'BraA03t10947Z' => 'bra', 'BraA03t14633Z' => 'bra', 'BraA08t35112Z' => 'bra', 'BraA09t41330Z' => 'bra', 'BraA10t44570Z' => 'bra', 'C01p02670' => 'bna', 'C01p20260' => 'bna', 'C02p05890' => 'bna', 'C03p19530' => 'bna', 'C05p17470' => 'bna', 'C07p53900' => 'bna', 'C07p61630' => 'bna', 'C08p16800' => 'bna', 'C08p42810' => 'bna', 'C09p39480' => 'bna', 'C09p63980' => 'bna', 'CAN.G1001.7' => 'can', 'CAN.G1034.55' => 'can', 'CAN.G143.7' => 'can', 'CAN.G3340.1' => 'can', 'CAN.G358.19' => 'can', 'CAN.G373.2' => 'can', 'CAN.G674.16' => 'can', 'CAN.G674.17' => 'can', 'CAN.G674.18' => 'can', 'CAN.G732.2' => 'can', 'CAN.G732.3' => 'can', 'CAN.G993.39' => 'can', 'CANSAT01G2052' => 'cansat', 'CANSAT80G0070' => 'cansat', 'CANSAT80G0483' => 'cansat', 'CANSAT80G0625' => 'cansat', 'CARHR019690' => 'chi', 'CARHR080280' => 'chi', 'CARHR152750' => 'chi', 'CARHR152760' => 'chi', 'CARHR152770' => 'chi', 'CARHR200340' => 'chi', 'CARHR232370' => 'chi', 'CARHR244670' => 'chi', 'CARHR244680' => 'chi', 'CARHR257520' => 'chi', 'Carub.0001s1872' => 'cru', 'Carub.0006s1130' => 'cru', 'Carub.0007s0396' => 'cru', 'Carub.0007s0397' => 'cru', 'Carub.0007s1608' => 'cru', 'Carub.0008s1068' => 'cru', 'Carub.0008s1077' => 'cru', 'Ca_16158_v3' => 'car', 'Ca_17571_v3' => 'car', 'Ca_21936_v3' => 'car', 'Ca_22350_v3' => 'car', 'CBR_g22445' => 'cbr', 'CBR_g26290' => 'cbr', 'Cc04_g09610' => 'ccan', 'Cc04_g12280' => 'ccan', 'Cc07_g10230' => 'ccan', 'CDE02G0093' => 'cde', 'CDE02G0701' => 'cde', 'CDE04G1050' => 'cde', 'CDE05G1833' => 'cde', 'CDE05G3058' => 'cde', 'CDE05G3380' => 'cde', 'CDE06G0536' => 'cde', 'Cfa006923' => 'cfa', 'Cfa009402' => 'cfa', 'Cfa018751' => 'cfa', 'Cfa019164' => 'cfa', 'Cfa022935' => 'cfa', 'Ciclev10019081m.g' => 'ccl', 'Ciclev10025076m.g' => 'ccl', 'Ciclev10030712m.g' => 'ccl', 'Ciclev10033760m.g' => 'ccl', 'CiPaw.05G105600' => 'cil', 'CiPaw.08G136700' => 'cil', 'CiPaw.11G003900' => 'cil', 'CiPaw.11G023700' => 'cil', 'CiPaw.12G003700' => 'cil', 'ClCG06G017100' => 'cla', 'ClCG06G018110' => 'cla', 'ClCG07G008800' => 'cla', 'ClCG07G015330' => 'cla', 'COL.COLO4_13698' => 'col', 'COL.COLO4_16659' => 'col', 'COL.COLO4_21986' => 'col', 'COL.COLO4_24049' => 'col', 'COL.COLO4_29061' => 'col', 'COL.COLO4_29075' => 'col', 'COL.COLO4_30094' => 'col', 'Cpa.g.c33689' => 'cpa', 'Cpa.g.sc108.39' => 'cpa', 'Cpa.g.sc108.41' => 'cpa', 'Cpa.g.sc1163.1' => 'cpa', 'Cpa.g.sc4.155' => 'cpa', 'Cpa.g.sc6.194' => 'cpa', 'CsaV3_1G000340' => 'csa', 'CsaV3_1G001400' => 'csa', 'CsaV3_4G002220' => 'csa', 'CsaV3_4G005370' => 'csa', 'CSS0007487' => 'camsi', 'CSS0008066' => 'camsi', 'CSS0009120' => 'camsi', 'CSS0015512' => 'camsi', 'CSS0022409' => 'camsi', 'CSS0025358' => 'camsi', 'CSS0044547' => 'camsi', 'DCAR_013057' => 'dca', 'DCAR_015058' => 'dca', 'DCAR_016027' => 'dca', 'DCAR_017327' => 'dca', 'DCAR_020743' => 'dca', 'DCAR_026157' => 'dca', 'DCAR_032339' => 'dca', 'DCAR_032340' => 'dca', 'Dinv11200' => 'din', 'Dinv11201' => 'din', 'Dinv20631' => 'din', 'Dinv23182' => 'din', 'Dinv33466' => 'din', 'Dinv33583' => 'din', 'Dinv38565' => 'din', 'Duzib068G0200' => 'dzi', 'Duzib147G0132' => 'dzi', 'Duzib147G0635' => 'dzi', 'Duzib205G1670' => 'dzi', 'Duzib251G0606' => 'dzi', 'ECA232G3336' => 'eca', 'ECA232G3763' => 'eca', 'ECA232G4845' => 'eca', 'ECA234G1607' => 'eca', 'ECA246G0932' => 'eca', 'ECA247G0781' => 'eca', 'ECA247G1932' => 'eca', 'ECA247G2079' => 'eca', 'ECA247G3338' => 'eca', 'ECA247G4115' => 'eca', 'EL10Ac3g06552' => 'bvu', 'EL10Ac5g10721' => 'bvu', 'EL10Ac5g10722' => 'bvu', 'EL10Ac5g10723' => 'bvu', 'EL10Ac5g11361' => 'bvu', 'EL10Ac6g13553' => 'bvu', 'EL10As8g23872' => 'bvu', 'Eucgr.B00250' => 'egr', 'Eucgr.B00251' => 'egr', 'Eucgr.B03533' => 'egr', 'Eucgr.I02381' => 'egr', 'Eucgr.K02700' => 'egr', 'FAN02G0174' => 'fan', 'FAN02G3146' => 'fan', 'FAN04G1672' => 'fan', 'FAN04G2273' => 'fan', 'FAN05G2791' => 'fan', 'FAN05G4035' => 'fan', 'FAN07G0834' => 'fan', 'FAN08G1198' => 'fan', 'FAN09G4182' => 'fan', 'FAN12G0496' => 'fan', 'FAN13G1027' => 'fan', 'FAN13G2951' => 'fan', 'FAN14G0705' => 'fan', 'FAN14G0720' => 'fan', 'FAN17G0201' => 'fan', 'FAN17G2665' => 'fan', 'FAN18G1456' => 'fan', 'FAN18G1525' => 'fan', 'FAN18G3500' => 'fan', 'FAN28G2670' => 'fan', 'FvH4_1g12391' => 'fve', 'FvH4_4g23220' => 'fve', 'FvH4_5g08810' => 'fve', 'FvH4_5g28960' => 'fve', 'FvH4_6g42820' => 'fve', 'FvH4_6g51110' => 'fve', 'Glyma.02G051802' => 'gma', 'Glyma.04G185300' => 'gma', 'Glyma.05G202900' => 'gma', 'Glyma.08G010300' => 'gma', 'Glyma.16G131900' => 'gma', 'Glyma.17G087900' => 'gma', 'Gohir.A07G048600' => 'ghi', 'Gohir.A11G179000' => 'ghi', 'Gohir.A12G140900' => 'ghi', 'Gohir.A12G140950' => 'ghi', 'Gohir.A12G191700' => 'ghi', 'Gohir.A13G086300' => 'ghi', 'Gohir.D07G052900' => 'ghi', 'Gohir.D11G186600' => 'ghi', 'Gohir.D12G145575' => 'ghi', 'Gohir.D12G145650' => 'ghi', 'Gohir.D12G145725' => 'ghi', 'Gohir.D12G194050' => 'ghi', 'Gohir.D13G091800' => 'ghi', 'Gorai.001G055900' => 'gra', 'Gorai.007G198400' => 'gra', 'Gorai.008G157000' => 'gra', 'Gorai.008G157100' => 'gra', 'Gorai.008G208700' => 'gra', 'Gorai.010G138700' => 'gra', 'GSVIVG01000977001' => 'vvi', 'GSVIVG01007708001' => 'vvi', 'GSVIVG01008587001' => 'vvi', 'GSVIVG01018849001' => 'vvi', 'GSVIVG01032432001' => 'vvi', 'HanXRQChr02g0034131' => 'han', 'HanXRQChr02g0035981' => 'han', 'HanXRQChr02g0035991' => 'han', 'HanXRQChr05g0155611' => 'han', 'HanXRQChr05g0155621' => 'han', 'HanXRQChr08g0236501' => 'han', 'HanXRQChr09g0261321' => 'han', 'HanXRQChr09g0272081' => 'han', 'HanXRQChr10g0310741' => 'han', 'HanXRQChr11g0325591' => 'han', 'HanXRQChr12g0385691' => 'han', 'HanXRQChr13g0387801' => 'han', 'HanXRQChr15g0463011' => 'han', 'Haze_03826' => 'cav', 'Haze_03827' => 'cav', 'Haze_07183' => 'cav', 'Haze_07537' => 'cav', 'Haze_07539' => 'cav', 'Haze_12461' => 'cav', 'Haze_16115' => 'cav', 'Haze_16808' => 'cav', 'Haze_18531' => 'cav', 'Hma1.2p1_0046F.1_g026700' => 'hma', 'Hma1.2p1_0046F.1_g026710' => 'hma', 'Hma1.2p1_0168F.1_g074340' => 'hma', 'Hma1.2p1_0266F.1_g107030' => 'hma', 'Hma1.2p1_0266F.1_g107060' => 'hma', 'Hma1.2p1_0275F.1_g110510' => 'hma', 'Hma1.2p1_0592F.1_g185490' => 'hma', 'Hma1.2p1_0592F.1_g185500' => 'hma', 'Hma1.2p1_0592F.1_g185510' => 'hma', 'Hma1.2p1_0592F.1_g185520' => 'hma', 'Hma1.2p1_0592F.1_g185530' => 'hma', 'Hma1.2p1_0818F.1_g223450' => 'hma', 'HPP92_009708' => 'vpl', 'HPP92_009793' => 'vpl', 'HPP92_009796' => 'vpl', 'HPP92_009797' => 'vpl', 'HPP92_014940' => 'vpl', 'HPP92_014988' => 'vpl', 'Hund02463' => 'sun', 'Hund02760' => 'sun', 'Hund05071' => 'sun', 'Hund10108' => 'sun', 'Hund11204' => 'sun', 'Hund14016' => 'sun', 'Hund16464' => 'sun', 'Lalb_Chr09g0333391' => 'lal', 'Lalb_Chr11g0070461' => 'lal', 'Lalb_Chr12g0201671' => 'lal', 'Lalb_Chr13g0297161' => 'lal', 'Lj1g0002823' => 'lja', 'Lj3C1074T6' => 'lonja', 'Lj4A212T28' => 'lonja', 'Lj4g0005516' => 'lja', 'Lj4g0013705' => 'lja', 'Lj4g0027865' => 'lja', 'Lj5C92G16' => 'lonja', 'Lj5C92T12' => 'lonja', 'Lj7C596T3' => 'lonja', 'Lj9A446G59' => 'lonja', 'Lj9A482G21' => 'lonja', 'Lsat_1_v5_gn_1_28261' => 'lsa', 'Lsat_1_v5_gn_1_28281' => 'lsa', 'Lsat_1_v5_gn_1_32721' => 'lsa', 'Lsat_1_v5_gn_4_151760' => 'lsa', 'Lsat_1_v5_gn_4_2120' => 'lsa', 'Lsat_1_v5_gn_4_75761' => 'lsa', 'Lsat_1_v5_gn_5_10920' => 'lsa', 'Manes.02G099900' => 'mes', 'Manes.11G096200' => 'mes', 'Manes.12G007200' => 'mes', 'Manes.14G048300' => 'mes', 'Manes.17G114700' => 'mes', 'Mapoly0002s0070' => 'mpo', 'Mapoly0029s0099' => 'mpo', 'MBI07_g24742_MAGBIO' => 'mbi', 'MBI10_g27988_MAGBIO' => 'mbi', 'MBI11_g13057_MAGBIO' => 'mbi', 'MD02G1137200' => 'mdo', 'MD06G1137200' => 'mdo', 'MD07G1122300' => 'mdo', 'MD09G1078200' => 'mdo', 'MD13G1123700' => 'mdo', 'MD14G1151900' => 'mdo', 'MD17G1030900' => 'mdo', 'MD17G1068200' => 'mdo', 'MD17G1068600' => 'mdo', 'Medtr3g077540' => 'mtr', 'Medtr4g105530' => 'mtr', 'Medtr8g076580' => 'mtr', 'Medtr8g076590' => 'mtr', 'Medtr8g096410' => 'mtr', 'MELO3C016411.2' => 'cme', 'MELO3C017780.2' => 'cme', 'MELO3C022560.2' => 'cme', 'MELO3C026187.2' => 'cme', 'MELO3C026286.2' => 'cme', 'MELO3C032854.2' => 'cme', 'Migut.H02495' => 'egut', 'Migut.I00561' => 'egut', 'Migut.K01015' => 'egut', 'Migut.K01016' => 'egut', 'Migut.L00743' => 'egut', 'Migut.L00744' => 'egut', 'Migut.L00746' => 'egut', 'Migut.L00798' => 'egut', 'Migut.L00799' => 'egut', 'Migut.N02096' => 'egut', 'MSTRG.11259' => 'ama', 'MSTRG.23142' => 'ama', 'MSTRG.2499' => 'ama', 'Nitab4.5_0000003g0730' => 'nta', 'Nitab4.5_0000137g0020' => 'nta', 'Nitab4.5_0000721g0210' => 'nta', 'Nitab4.5_0000723g0050' => 'nta', 'Nitab4.5_0000913g0070' => 'nta', 'Nitab4.5_0001332g0040' => 'nta', 'Nitab4.5_0001771g0050' => 'nta', 'Nitab4.5_0001918g0050' => 'nta', 'Nitab4.5_0002686g0030' => 'nta', 'Nitab4.5_0003156g0020' => 'nta', 'Nitab4.5_0003383g0040' => 'nta', 'Nitab4.5_0003918g0010' => 'nta', 'Nitab4.5_0006760g0010' => 'nta', 'Nn1g05981' => 'nnu', 'Nn1g06288' => 'nnu', 'Nn3g16371' => 'nnu', 'Nn3g16786' => 'nnu', 'Nn4g22232' => 'nnu', 'Oeu005144.1' => 'oeu', 'Oeu005145.1' => 'oeu', 'Oeu011348.1' => 'oeu', 'Oeu016415.1' => 'oeu', 'Oeu023501.1' => 'oeu', 'Oeu044473.1' => 'oeu', 'Oeu048892.2' => 'oeu', 'Os01g0549200' => 'osa', 'Os02g0469300' => 'osa', 'Os04g0311100' => 'osa', 'Os06g0474900' => 'osa', 'Os10g0181700' => 'osa', 'Os11g0454800' => 'osa', 'Peaxi162Scf00037g00714' => 'pax', 'Peaxi162Scf00084g01217' => 'pax', 'Peaxi162Scf00257g00217' => 'pax', 'Peaxi162Scf00516g00215' => 'pax', 'Peaxi162Scf00689g00123' => 'pax', 'PGR044G2719' => 'pgr', 'PGR083G1360' => 'pgr', 'PGR102G2849' => 'pgr', 'PGR119G2534' => 'pgr', 'PGSC0003DMG400003538' => 'stu', 'PGSC0003DMG400028138' => 'stu', 'PGSC0003DMG400031732' => 'stu', 'PGSC0003DMG400038165' => 'stu', 'Phvul.002G284600' => 'pvu', 'Phvul.003G258200' => 'pvu', 'Phvul.009G176500' => 'pvu', 'Potri.003G167201' => 'ptr', 'Potri.005G118400' => 'ptr', 'Potri.012G089000' => 'ptr', 'Potri.012G102800' => 'ptr', 'Potri.015G079400' => 'ptr', 'Potri.015G100900' => 'ptr', 'Pp3c14_9810' => 'ppa', 'Pp3c15_10450' => 'ppa', 'Pp3c20_19150' => 'ppa', 'Pp3c23_12740' => 'ppa', 'Pp3c23_6310' => 'ppa', 'Pp3c24_3720' => 'ppa', 'Pp3c27_2580' => 'ppa', 'Pp3c9_8990' => 'ppa', 'PRCOL_00002854' => 'pco', 'Prupe.1G221200' => 'ppe', 'Prupe.3G289000' => 'ppe', 'Prupe.5G147000' => 'ppe', 'Prupe.6G157300' => 'ppe', 'Prupe.7G163400' => 'ppe', 'Psat0s2177g0040' => 'psa', 'Psat3g174760' => 'psa', 'Psat3g192160' => 'psa', 'Psat4g058520' => 'psa', 'Psat4g096840' => 'psa', 'Psat7g037320' => 'psa', 'PSO017G1274' => 'pso', 'PSO017G5166' => 'pso', 'PSO063G4558' => 'pso', 'PSO170G4458' => 'pso', 'PSO170G5005' => 'pso', 'PSO210G6156' => 'pso', 'PSO210G6635' => 'pso', 'PSO210G7397' => 'pso', 'PSO210G7700' => 'pso', 'PSO455G0035' => 'pso', 'PSO455G0180' => 'pso', 'PSO478G4515' => 'pso', 'PSO832G1305' => 'pso', 'PSO832G3489' => 'pso', 'QL02p075247' => 'qlo', 'QL03p051148' => 'qlo', 'QL05p010313' => 'qlo', 'QL06p034627' => 'qlo', 'QL10p001889' => 'qlo', 'QL10p010846' => 'qlo', 'RcHm_v2.0_Chr1g0350621' => 'rch', 'RcHm_v2.0_Chr1g0350641' => 'rch', 'RcHm_v2.0_Chr2g0092891' => 'rch', 'RcHm_v2.0_Chr2g0100251' => 'rch', 'RcHm_v2.0_Chr2g0158661' => 'rch', 'RcHm_v2.0_Chr2g0172741' => 'rch', 'RcHm_v2.0_Chr4g0429571' => 'rch', 'RcHm_v2.0_Chr5g0042471' => 'rch', 'RcHm_v2.0_Chr7g0189451' => 'rch', 'Rhsim08G0052000' => 'rsi', 'Rhsim08G0174400' => 'rsi', 'Rhsim08G0193200' => 'rsi', 'Rhsim10G0214800' => 'rsi', 'Rhsim10G0214900' => 'rsi', 'Rhsim10G0215000' => 'rsi', 'Rhsim12G0022900' => 'rsi', 'Rhsim12G0177500' => 'rsi', 'Rhsim12G0177700' => 'rsi', 'Sabra03G0122600' => 'sbr', 'Sabra05G0097400' => 'sbr', 'Sabra12G0064100' => 'sbr', 'Sabra15G0121300' => 'sbr', 'SalBow2G0642' => 'sbo', 'SalBow5G2667' => 'sbo', 'SalBow5G4873' => 'sbo', 'SalBow8G2395' => 'sbo', 'Sc03g0003290' => 'sci', 'Sc10g0010130' => 'sci', 'Sc22g0003650' => 'sci', 'Sed0001603' => 'sed', 'Sed0004259' => 'sed', 'Sed0006789' => 'sed', 'Sed0011838' => 'sed', 'Sed0012964' => 'sed', 'Sed0016383' => 'sed', 'Sed0019010' => 'sed', 'Sed0020188' => 'sed', 'SEGI_04702' => 'sgi', 'SEGI_17231' => 'sgi', 'SEGI_18877' => 'sgi', 'SEGI_25196' => 'sgi', 'SEGI_25515' => 'sgi', 'SEGI_28445' => 'sgi', 'SEGI_37452' => 'sgi', 'SGA_v2.0_scaffold188G40336' => 'sas', 'SGA_v2.0_scaffold228G43247' => 'sas', 'SGA_v2.0_scaffold280G46853' => 'sas', 'SGA_v2.0_scaffold34G13808' => 'sas', 'SGA_v2.0_scaffold40G15576' => 'sas', 'SGA_v2.0_scaffold611G53188' => 'sas', 'SGA_v2.0_scaffold78G25461' => 'sas', 'SGA_v2.0_scaffold90G27888' => 'sas', 'SHI08601' => 'shi', 'SHI08606' => 'shi', 'SHI17117' => 'shi', 'SHI17119' => 'shi', 'SMO118G0201' => 'smo', 'SMO169G0247' => 'smo', 'SMO176G0006' => 'smo', 'SMO176G0015' => 'smo', 'SMO202G0006' => 'smo', 'SMO240G0050' => 'smo', 'SMO286G0009' => 'smo', 'SMO338G0033' => 'smo', 'SMO356G0533' => 'smo', 'SMO364G0382' => 'smo', 'SMO367G0166' => 'smo', 'SMO367G1098' => 'smo', 'Solyc01g009920.3' => 'sly', 'Solyc01g099300.3' => 'sly', 'Solyc02g084700.3' => 'sly', 'Solyc03g097520.3' => 'sly', 'Solyc06g071580.3' => 'sly', 'Solyc10g081760.3' => 'sly', 'Sopen01g005480' => 'spe', 'Sopen01g042850' => 'spe', 'Sopen02g029370' => 'spe', 'Sopen03g028280' => 'spe', 'Sopen06g027870' => 'spe', 'Sopen10g032270' => 'spe', 'Sp5g18180' => 'spa', 'Sp6g12880' => 'spa', 'Sp6g30850' => 'spa', 'Sp7g22960' => 'spa', 'Sp7g34010' => 'spa', 'SpUn1326_0010' => 'spa', 'TAR371G0242' => 'tar', 'TAR622G0638' => 'tar', 'TAR628G1548' => 'tar', 'TAR629G1079' => 'tar', 'TAR629G3413' => 'tar', 'THA.LOC104804249' => 'tha', 'THA.LOC104808315' => 'tha', 'THA.LOC104809238' => 'tha', 'THA.LOC104825484' => 'tha', 'Thecc.01G025500' => 'tca', 'Thecc.03G015800' => 'tca', 'Thecc.03G018000' => 'tca', 'Thecc.03G134800' => 'tca', 'Thecc.04G014700' => 'tca', 'Thhalv10006991m.g' => 'esa', 'Thhalv10012707m.g' => 'esa', 'Thhalv10015739m.g' => 'esa', 'Thhalv10024553m.g' => 'esa', 'Thhalv10024673m.g' => 'esa', 'Thhalv10029187m.g' => 'esa', 'TPR.G12971' => 'tpr', 'TPR.G29396' => 'tpr', 'TPR.G33376' => 'tpr', 'TPR.G35508' => 'tpr', 'TPR.G35516' => 'tpr', 'TPR.G37317' => 'tpr', 'TPR.G37389' => 'tpr', 'TPR.G37523' => 'tpr', 'TPR.G559' => 'tpr', 'TWI14G0070' => 'twi', 'TWI14G0729' => 'twi', 'TWI18G0596' => 'twi', 'TWI39G0780' => 'twi', 'TWI39G0850' => 'twi', 'TWI73G1052' => 'twi', 'unitig_52.g17485' => 'ugi', 'unitig_61.g26355' => 'ugi', 'vmacro01040' => 'vma', 'vmacro16731' => 'vma', 'vmacro18270' => 'vma', 'vmacro19142' => 'vma', 'vmacro19407' => 'vma', 'vmacro19408' => 'vma', 'vmacro21899' => 'vma', 'vmacro21900' => 'vma', 'vmacro21901' => 'vma', 'VMungo0251G0490' => 'vmu', 'VMungo0251G1748' => 'vmu', 'VMungo1309G0421' => 'vmu', 'Zm00001eb086500' => 'zma', 'Zm00001eb150680' => 'zma', 'Zm00001eb162330' => 'zma', 'Zm00001eb203130' => 'zma', 'Zm00001eb369480' => 'zma', 'Zm00001eb382340' => 'zma', 'Zm00001eb416360' => 'zma' ), 'gf_id' => 'HOM05D000902', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000902' ), 'data_identifier' => 'HOM05D000902', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000902', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '663', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02470' => 'bna', 'A01p16260' => 'bna', 'A02p01680' => 'bna', 'A03p16600' => 'bna', 'A03p55660' => 'bna', 'A03p64160' => 'bna', 'A03p64170' => 'bna', 'A08p31900' => 'bna', 'A09p59530' => 'bna', 'A10p08230' => 'bna', 'A10p25090' => 'bna', 'Aa31LG3G7100' => 'aar', 'Aa31LG3G7110' => 'aar', 'Aa31LG6G13160' => 'aar', 'Aa31LG7G10770' => 'aar', 'Aa31LG7G3830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2723' => 'aag', 'Actinidia08045' => 'ach', 'Actinidia08888' => 'ach', 'Actinidia18333' => 'ach', 'Actinidia19334' => 'ach', 'Actinidia25552' => 'ach', 'Actinidia26089' => 'ach', 'Actinidia30615' => 'ach', 'Actinidia30616' => 'ach', 'Actinidia33083' => 'ach', 'Actinidia35762' => 'ach', 'Ah.02g110620' => 'amhyb', 'Ah.11g046390' => 'amhyb', 'AL1G31670' => 'aly', 'AL6G23730' => 'aly', 'AL7G14740' => 'aly', 'AL7G14750' => 'aly', 'AL7G14760' => 'aly', 'AL7G28220' => 'aly', 'AL8G24940' => 'aly', 'Aqoxy3G01665' => 'aox', 'Aqoxy3G02853' => 'aox', 'Aqoxy5G01513' => 'aox', 'Aqoxy5G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8SKA4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ75LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKDA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0LJZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7REX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZP4YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWX7I5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2QKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS0L9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPCD8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q161UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC7XCF' => 'arhy', 'AT1G19100' => 'ath', 'AT4G24970' => 'ath', 'AT4G36270' => 'ath', 'AT4G36280' => 'ath', 'AT4G36290' => 'ath', 'AT5G13130' => 'ath', 'AT5G50780' => 'ath', 'ATR0582G266' => 'atr', 'ATR0661G195' => 'atr', 'ATR1152G031' => 'atr', 'Atru.chr11.2382' => 'acertr', 'Atru.chr12.2337' => 'acertr', 'Atru.chr3.744' => 'acertr', 'Atru.chr6.1870' => 'acertr', 'Atru.chr9.2515' => 'acertr', 'AUR62004120' => 'cqu', 'AUR62005667' => 'cqu', 'AUR62007634' => 'cqu', 'AUR62008186' => 'cqu', 'AUR62008187' => 'cqu', 'AUR62008188' => 'cqu', 'AUR62027954' => 'cqu', 'AUR62028766' => 'cqu', 'AUR62028767' => 'cqu', 'AUR62028768' => 'cqu', 'AUR62028886' => 'cqu', 'AUR62029563' => 'cqu', 'AUR62038832' => 'cqu', 'BcaB01g04149' => 'bca', 'BcaB03g12940' => 'bca', 'BcaB03g13090' => 'bca', 'BcaB03g14466' => 'bca', 'BcaB05g24035' => 'bca', 'BcaC01g06050' => 'bca', 'BcaC04g19148' => 'bca', 'BcaC04g20761' => 'bca', 'BcaC06g32845' => 'bca', 'BcaC07g41274' => 'bca', 'BcaC09g50827' => 'bca', 'BcaNung00741' => 'bca', 'BcaNung00742' => 'bca', 'BcaNung01859' => 'bca', 'BcaNung03985' => 'bca', 'BcaNung03989' => 'bca', 'BcaNung05661' => 'bca', 'BolC1t00257H' => 'bol', 'BolC1t01956H' => 'bol', 'BolC2t06534H' => 'bol', 'BolC3t14334H' => 'bol', 'BolC5t30451H' => 'bol', 'BolC7t45880H' => 'bol', 'BolC7t46586H' => 'bol', 'BolC8t49301H' => 'bol', 'BolC8t51837H' => 'bol', 'BolC9t56822H' => 'bol', 'BolC9t59235H' => 'bol', 'BraA01t00234Z' => 'bra', 'BraA01t01563Z' => 'bra', 'BraA02t05147Z' => 'bra', 'BraA03t10947Z' => 'bra', 'BraA03t14633Z' => 'bra', 'BraA08t35112Z' => 'bra', 'BraA09t41330Z' => 'bra', 'BraA10t44570Z' => 'bra', 'C01p02670' => 'bna', 'C01p20260' => 'bna', 'C02p05890' => 'bna', 'C03p19530' => 'bna', 'C05p17470' => 'bna', 'C07p53900' => 'bna', 'C07p61630' => 'bna', 'C08p16800' => 'bna', 'C08p42810' => 'bna', 'C09p39480' => 'bna', 'C09p63980' => 'bna', 'CAN.G1001.7' => 'can', 'CAN.G1034.55' => 'can', 'CAN.G143.7' => 'can', 'CAN.G3340.1' => 'can', 'CAN.G358.19' => 'can', 'CAN.G373.2' => 'can', 'CAN.G674.16' => 'can', 'CAN.G674.17' => 'can', 'CAN.G674.18' => 'can', 'CAN.G732.2' => 'can', 'CAN.G732.3' => 'can', 'CAN.G993.39' => 'can', 'CANSAT01G2052' => 'cansat', 'CANSAT80G0070' => 'cansat', 'CANSAT80G0483' => 'cansat', 'CANSAT80G0625' => 'cansat', 'CARHR019690' => 'chi', 'CARHR080280' => 'chi', 'CARHR152750' => 'chi', 'CARHR152760' => 'chi', 'CARHR152770' => 'chi', 'CARHR200340' => 'chi', 'CARHR232370' => 'chi', 'CARHR244670' => 'chi', 'CARHR244680' => 'chi', 'CARHR257520' => 'chi', 'Carub.0001s1872' => 'cru', 'Carub.0006s1130' => 'cru', 'Carub.0007s0396' => 'cru', 'Carub.0007s0397' => 'cru', 'Carub.0007s1608' => 'cru', 'Carub.0008s1068' => 'cru', 'Carub.0008s1077' => 'cru', 'Ca_16158_v3' => 'car', 'Ca_17571_v3' => 'car', 'Ca_21936_v3' => 'car', 'Ca_22350_v3' => 'car', 'CBR_g22445' => 'cbr', 'CBR_g26290' => 'cbr', 'Cc04_g09610' => 'ccan', 'Cc04_g12280' => 'ccan', 'Cc07_g10230' => 'ccan', 'CDE02G0093' => 'cde', 'CDE02G0701' => 'cde', 'CDE04G1050' => 'cde', 'CDE05G1833' => 'cde', 'CDE05G3058' => 'cde', 'CDE05G3380' => 'cde', 'CDE06G0536' => 'cde', 'Cfa006923' => 'cfa', 'Cfa009402' => 'cfa', 'Cfa018751' => 'cfa', 'Cfa019164' => 'cfa', 'Cfa022935' => 'cfa', 'Ciclev10019081m.g' => 'ccl', 'Ciclev10025076m.g' => 'ccl', 'Ciclev10030712m.g' => 'ccl', 'Ciclev10033760m.g' => 'ccl', 'CiPaw.05G105600' => 'cil', 'CiPaw.08G136700' => 'cil', 'CiPaw.11G003900' => 'cil', 'CiPaw.11G023700' => 'cil', 'CiPaw.12G003700' => 'cil', 'ClCG06G017100' => 'cla', 'ClCG06G018110' => 'cla', 'ClCG07G008800' => 'cla', 'ClCG07G015330' => 'cla', 'COL.COLO4_13698' => 'col', 'COL.COLO4_16659' => 'col', 'COL.COLO4_21986' => 'col', 'COL.COLO4_24049' => 'col', 'COL.COLO4_29061' => 'col', 'COL.COLO4_29075' => 'col', 'COL.COLO4_30094' => 'col', 'Cpa.g.c33689' => 'cpa', 'Cpa.g.sc108.39' => 'cpa', 'Cpa.g.sc108.41' => 'cpa', 'Cpa.g.sc1163.1' => 'cpa', 'Cpa.g.sc4.155' => 'cpa', 'Cpa.g.sc6.194' => 'cpa', 'CsaV3_1G000340' => 'csa', 'CsaV3_1G001400' => 'csa', 'CsaV3_4G002220' => 'csa', 'CsaV3_4G005370' => 'csa', 'CSS0007487' => 'camsi', 'CSS0008066' => 'camsi', 'CSS0009120' => 'camsi', 'CSS0015512' => 'camsi', 'CSS0022409' => 'camsi', 'CSS0025358' => 'camsi', 'CSS0044547' => 'camsi', 'DCAR_013057' => 'dca', 'DCAR_015058' => 'dca', 'DCAR_016027' => 'dca', 'DCAR_017327' => 'dca', 'DCAR_020743' => 'dca', 'DCAR_026157' => 'dca', 'DCAR_032339' => 'dca', 'DCAR_032340' => 'dca', 'Dinv11200' => 'din', 'Dinv11201' => 'din', 'Dinv20631' => 'din', 'Dinv23182' => 'din', 'Dinv33466' => 'din', 'Dinv33583' => 'din', 'Dinv38565' => 'din', 'Duzib068G0200' => 'dzi', 'Duzib147G0132' => 'dzi', 'Duzib147G0635' => 'dzi', 'Duzib205G1670' => 'dzi', 'Duzib251G0606' => 'dzi', 'ECA232G3336' => 'eca', 'ECA232G3763' => 'eca', 'ECA232G4845' => 'eca', 'ECA234G1607' => 'eca', 'ECA246G0932' => 'eca', 'ECA247G0781' => 'eca', 'ECA247G1932' => 'eca', 'ECA247G2079' => 'eca', 'ECA247G3338' => 'eca', 'ECA247G4115' => 'eca', 'EL10Ac3g06552' => 'bvu', 'EL10Ac5g10721' => 'bvu', 'EL10Ac5g10722' => 'bvu', 'EL10Ac5g10723' => 'bvu', 'EL10Ac5g11361' => 'bvu', 'EL10Ac6g13553' => 'bvu', 'EL10As8g23872' => 'bvu', 'Eucgr.B00250' => 'egr', 'Eucgr.B00251' => 'egr', 'Eucgr.B03533' => 'egr', 'Eucgr.I02381' => 'egr', 'Eucgr.K02700' => 'egr', 'FAN02G0174' => 'fan', 'FAN02G3146' => 'fan', 'FAN04G1672' => 'fan', 'FAN04G2273' => 'fan', 'FAN05G2791' => 'fan', 'FAN05G4035' => 'fan', 'FAN07G0834' => 'fan', 'FAN08G1198' => 'fan', 'FAN09G4182' => 'fan', 'FAN12G0496' => 'fan', 'FAN13G1027' => 'fan', 'FAN13G2951' => 'fan', 'FAN14G0705' => 'fan', 'FAN14G0720' => 'fan', 'FAN17G0201' => 'fan', 'FAN17G2665' => 'fan', 'FAN18G1456' => 'fan', 'FAN18G1525' => 'fan', 'FAN18G3500' => 'fan', 'FAN28G2670' => 'fan', 'FvH4_1g12391' => 'fve', 'FvH4_4g23220' => 'fve', 'FvH4_5g08810' => 'fve', 'FvH4_5g28960' => 'fve', 'FvH4_6g42820' => 'fve', 'FvH4_6g51110' => 'fve', 'Glyma.02G051802' => 'gma', 'Glyma.04G185300' => 'gma', 'Glyma.05G202900' => 'gma', 'Glyma.08G010300' => 'gma', 'Glyma.16G131900' => 'gma', 'Glyma.17G087900' => 'gma', 'Gohir.A07G048600' => 'ghi', 'Gohir.A11G179000' => 'ghi', 'Gohir.A12G140900' => 'ghi', 'Gohir.A12G140950' => 'ghi', 'Gohir.A12G191700' => 'ghi', 'Gohir.A13G086300' => 'ghi', 'Gohir.D07G052900' => 'ghi', 'Gohir.D11G186600' => 'ghi', 'Gohir.D12G145575' => 'ghi', 'Gohir.D12G145650' => 'ghi', 'Gohir.D12G145725' => 'ghi', 'Gohir.D12G194050' => 'ghi', 'Gohir.D13G091800' => 'ghi', 'Gorai.001G055900' => 'gra', 'Gorai.007G198400' => 'gra', 'Gorai.008G157000' => 'gra', 'Gorai.008G157100' => 'gra', 'Gorai.008G208700' => 'gra', 'Gorai.010G138700' => 'gra', 'GSVIVG01000977001' => 'vvi', 'GSVIVG01007708001' => 'vvi', 'GSVIVG01008587001' => 'vvi', 'GSVIVG01018849001' => 'vvi', 'GSVIVG01032432001' => 'vvi', 'HanXRQChr02g0034131' => 'han', 'HanXRQChr02g0035981' => 'han', 'HanXRQChr02g0035991' => 'han', 'HanXRQChr05g0155611' => 'han', 'HanXRQChr05g0155621' => 'han', 'HanXRQChr08g0236501' => 'han', 'HanXRQChr09g0261321' => 'han', 'HanXRQChr09g0272081' => 'han', 'HanXRQChr10g0310741' => 'han', 'HanXRQChr11g0325591' => 'han', 'HanXRQChr12g0385691' => 'han', 'HanXRQChr13g0387801' => 'han', 'HanXRQChr15g0463011' => 'han', 'Haze_03826' => 'cav', 'Haze_03827' => 'cav', 'Haze_07183' => 'cav', 'Haze_07537' => 'cav', 'Haze_07539' => 'cav', 'Haze_12461' => 'cav', 'Haze_16115' => 'cav', 'Haze_16808' => 'cav', 'Haze_18531' => 'cav', 'Hma1.2p1_0046F.1_g026700' => 'hma', 'Hma1.2p1_0046F.1_g026710' => 'hma', 'Hma1.2p1_0168F.1_g074340' => 'hma', 'Hma1.2p1_0266F.1_g107030' => 'hma', 'Hma1.2p1_0266F.1_g107060' => 'hma', 'Hma1.2p1_0275F.1_g110510' => 'hma', 'Hma1.2p1_0592F.1_g185490' => 'hma', 'Hma1.2p1_0592F.1_g185500' => 'hma', 'Hma1.2p1_0592F.1_g185510' => 'hma', 'Hma1.2p1_0592F.1_g185520' => 'hma', 'Hma1.2p1_0592F.1_g185530' => 'hma', 'Hma1.2p1_0818F.1_g223450' => 'hma', 'HPP92_009708' => 'vpl', 'HPP92_009793' => 'vpl', 'HPP92_009796' => 'vpl', 'HPP92_009797' => 'vpl', 'HPP92_014940' => 'vpl', 'HPP92_014988' => 'vpl', 'Hund02463' => 'sun', 'Hund02760' => 'sun', 'Hund05071' => 'sun', 'Hund10108' => 'sun', 'Hund11204' => 'sun', 'Hund14016' => 'sun', 'Hund16464' => 'sun', 'Lalb_Chr09g0333391' => 'lal', 'Lalb_Chr11g0070461' => 'lal', 'Lalb_Chr12g0201671' => 'lal', 'Lalb_Chr13g0297161' => 'lal', 'Lj1g0002823' => 'lja', 'Lj3C1074T6' => 'lonja', 'Lj4A212T28' => 'lonja', 'Lj4g0005516' => 'lja', 'Lj4g0013705' => 'lja', 'Lj4g0027865' => 'lja', 'Lj5C92G16' => 'lonja', 'Lj5C92T12' => 'lonja', 'Lj7C596T3' => 'lonja', 'Lj9A446G59' => 'lonja', 'Lj9A482G21' => 'lonja', 'Lsat_1_v5_gn_1_28261' => 'lsa', 'Lsat_1_v5_gn_1_28281' => 'lsa', 'Lsat_1_v5_gn_1_32721' => 'lsa', 'Lsat_1_v5_gn_4_151760' => 'lsa', 'Lsat_1_v5_gn_4_2120' => 'lsa', 'Lsat_1_v5_gn_4_75761' => 'lsa', 'Lsat_1_v5_gn_5_10920' => 'lsa', 'Manes.02G099900' => 'mes', 'Manes.11G096200' => 'mes', 'Manes.12G007200' => 'mes', 'Manes.14G048300' => 'mes', 'Manes.17G114700' => 'mes', 'Mapoly0002s0070' => 'mpo', 'Mapoly0029s0099' => 'mpo', 'MBI07_g24742_MAGBIO' => 'mbi', 'MBI10_g27988_MAGBIO' => 'mbi', 'MBI11_g13057_MAGBIO' => 'mbi', 'MD02G1137200' => 'mdo', 'MD06G1137200' => 'mdo', 'MD07G1122300' => 'mdo', 'MD09G1078200' => 'mdo', 'MD13G1123700' => 'mdo', 'MD14G1151900' => 'mdo', 'MD17G1030900' => 'mdo', 'MD17G1068200' => 'mdo', 'MD17G1068600' => 'mdo', 'Medtr3g077540' => 'mtr', 'Medtr4g105530' => 'mtr', 'Medtr8g076580' => 'mtr', 'Medtr8g076590' => 'mtr', 'Medtr8g096410' => 'mtr', 'MELO3C016411.2' => 'cme', 'MELO3C017780.2' => 'cme', 'MELO3C022560.2' => 'cme', 'MELO3C026187.2' => 'cme', 'MELO3C026286.2' => 'cme', 'MELO3C032854.2' => 'cme', 'Migut.H02495' => 'egut', 'Migut.I00561' => 'egut', 'Migut.K01015' => 'egut', 'Migut.K01016' => 'egut', 'Migut.L00743' => 'egut', 'Migut.L00744' => 'egut', 'Migut.L00746' => 'egut', 'Migut.L00798' => 'egut', 'Migut.L00799' => 'egut', 'Migut.N02096' => 'egut', 'MSTRG.11259' => 'ama', 'MSTRG.23142' => 'ama', 'MSTRG.2499' => 'ama', 'Nitab4.5_0000003g0730' => 'nta', 'Nitab4.5_0000137g0020' => 'nta', 'Nitab4.5_0000721g0210' => 'nta', 'Nitab4.5_0000723g0050' => 'nta', 'Nitab4.5_0000913g0070' => 'nta', 'Nitab4.5_0001332g0040' => 'nta', 'Nitab4.5_0001771g0050' => 'nta', 'Nitab4.5_0001918g0050' => 'nta', 'Nitab4.5_0002686g0030' => 'nta', 'Nitab4.5_0003156g0020' => 'nta', 'Nitab4.5_0003383g0040' => 'nta', 'Nitab4.5_0003918g0010' => 'nta', 'Nitab4.5_0006760g0010' => 'nta', 'Nn1g05981' => 'nnu', 'Nn1g06288' => 'nnu', 'Nn3g16371' => 'nnu', 'Nn3g16786' => 'nnu', 'Nn4g22232' => 'nnu', 'Oeu005144.1' => 'oeu', 'Oeu005145.1' => 'oeu', 'Oeu011348.1' => 'oeu', 'Oeu016415.1' => 'oeu', 'Oeu023501.1' => 'oeu', 'Oeu044473.1' => 'oeu', 'Oeu048892.2' => 'oeu', 'Os01g0549200' => 'osa', 'Os02g0469300' => 'osa', 'Os04g0311100' => 'osa', 'Os06g0474900' => 'osa', 'Os10g0181700' => 'osa', 'Os11g0454800' => 'osa', 'Peaxi162Scf00037g00714' => 'pax', 'Peaxi162Scf00084g01217' => 'pax', 'Peaxi162Scf00257g00217' => 'pax', 'Peaxi162Scf00516g00215' => 'pax', 'Peaxi162Scf00689g00123' => 'pax', 'PGR044G2719' => 'pgr', 'PGR083G1360' => 'pgr', 'PGR102G2849' => 'pgr', 'PGR119G2534' => 'pgr', 'PGSC0003DMG400003538' => 'stu', 'PGSC0003DMG400028138' => 'stu', 'PGSC0003DMG400031732' => 'stu', 'PGSC0003DMG400038165' => 'stu', 'Phvul.002G284600' => 'pvu', 'Phvul.003G258200' => 'pvu', 'Phvul.009G176500' => 'pvu', 'Potri.003G167201' => 'ptr', 'Potri.005G118400' => 'ptr', 'Potri.012G089000' => 'ptr', 'Potri.012G102800' => 'ptr', 'Potri.015G079400' => 'ptr', 'Potri.015G100900' => 'ptr', 'Pp3c14_9810' => 'ppa', 'Pp3c15_10450' => 'ppa', 'Pp3c20_19150' => 'ppa', 'Pp3c23_12740' => 'ppa', 'Pp3c23_6310' => 'ppa', 'Pp3c24_3720' => 'ppa', 'Pp3c27_2580' => 'ppa', 'Pp3c9_8990' => 'ppa', 'PRCOL_00002854' => 'pco', 'Prupe.1G221200' => 'ppe', 'Prupe.3G289000' => 'ppe', 'Prupe.5G147000' => 'ppe', 'Prupe.6G157300' => 'ppe', 'Prupe.7G163400' => 'ppe', 'Psat0s2177g0040' => 'psa', 'Psat3g174760' => 'psa', 'Psat3g192160' => 'psa', 'Psat4g058520' => 'psa', 'Psat4g096840' => 'psa', 'Psat7g037320' => 'psa', 'PSO017G1274' => 'pso', 'PSO017G5166' => 'pso', 'PSO063G4558' => 'pso', 'PSO170G4458' => 'pso', 'PSO170G5005' => 'pso', 'PSO210G6156' => 'pso', 'PSO210G6635' => 'pso', 'PSO210G7397' => 'pso', 'PSO210G7700' => 'pso', 'PSO455G0035' => 'pso', 'PSO455G0180' => 'pso', 'PSO478G4515' => 'pso', 'PSO832G1305' => 'pso', 'PSO832G3489' => 'pso', 'QL02p075247' => 'qlo', 'QL03p051148' => 'qlo', 'QL05p010313' => 'qlo', 'QL06p034627' => 'qlo', 'QL10p001889' => 'qlo', 'QL10p010846' => 'qlo', 'RcHm_v2.0_Chr1g0350621' => 'rch', 'RcHm_v2.0_Chr1g0350641' => 'rch', 'RcHm_v2.0_Chr2g0092891' => 'rch', 'RcHm_v2.0_Chr2g0100251' => 'rch', 'RcHm_v2.0_Chr2g0158661' => 'rch', 'RcHm_v2.0_Chr2g0172741' => 'rch', 'RcHm_v2.0_Chr4g0429571' => 'rch', 'RcHm_v2.0_Chr5g0042471' => 'rch', 'RcHm_v2.0_Chr7g0189451' => 'rch', 'Rhsim08G0052000' => 'rsi', 'Rhsim08G0174400' => 'rsi', 'Rhsim08G0193200' => 'rsi', 'Rhsim10G0214800' => 'rsi', 'Rhsim10G0214900' => 'rsi', 'Rhsim10G0215000' => 'rsi', 'Rhsim12G0022900' => 'rsi', 'Rhsim12G0177500' => 'rsi', 'Rhsim12G0177700' => 'rsi', 'Sabra03G0122600' => 'sbr', 'Sabra05G0097400' => 'sbr', 'Sabra12G0064100' => 'sbr', 'Sabra15G0121300' => 'sbr', 'SalBow2G0642' => 'sbo', 'SalBow5G2667' => 'sbo', 'SalBow5G4873' => 'sbo', 'SalBow8G2395' => 'sbo', 'Sc03g0003290' => 'sci', 'Sc10g0010130' => 'sci', 'Sc22g0003650' => 'sci', 'Sed0001603' => 'sed', 'Sed0004259' => 'sed', 'Sed0006789' => 'sed', 'Sed0011838' => 'sed', 'Sed0012964' => 'sed', 'Sed0016383' => 'sed', 'Sed0019010' => 'sed', 'Sed0020188' => 'sed', 'SEGI_04702' => 'sgi', 'SEGI_17231' => 'sgi', 'SEGI_18877' => 'sgi', 'SEGI_25196' => 'sgi', 'SEGI_25515' => 'sgi', 'SEGI_28445' => 'sgi', 'SEGI_37452' => 'sgi', 'SGA_v2.0_scaffold188G40336' => 'sas', 'SGA_v2.0_scaffold228G43247' => 'sas', 'SGA_v2.0_scaffold280G46853' => 'sas', 'SGA_v2.0_scaffold34G13808' => 'sas', 'SGA_v2.0_scaffold40G15576' => 'sas', 'SGA_v2.0_scaffold611G53188' => 'sas', 'SGA_v2.0_scaffold78G25461' => 'sas', 'SGA_v2.0_scaffold90G27888' => 'sas', 'SHI08601' => 'shi', 'SHI08606' => 'shi', 'SHI17117' => 'shi', 'SHI17119' => 'shi', 'SMO118G0201' => 'smo', 'SMO169G0247' => 'smo', 'SMO176G0006' => 'smo', 'SMO176G0015' => 'smo', 'SMO202G0006' => 'smo', 'SMO240G0050' => 'smo', 'SMO286G0009' => 'smo', 'SMO338G0033' => 'smo', 'SMO356G0533' => 'smo', 'SMO364G0382' => 'smo', 'SMO367G0166' => 'smo', 'SMO367G1098' => 'smo', 'Solyc01g009920.3' => 'sly', 'Solyc01g099300.3' => 'sly', 'Solyc02g084700.3' => 'sly', 'Solyc03g097520.3' => 'sly', 'Solyc06g071580.3' => 'sly', 'Solyc10g081760.3' => 'sly', 'Sopen01g005480' => 'spe', 'Sopen01g042850' => 'spe', 'Sopen02g029370' => 'spe', 'Sopen03g028280' => 'spe', 'Sopen06g027870' => 'spe', 'Sopen10g032270' => 'spe', 'Sp5g18180' => 'spa', 'Sp6g12880' => 'spa', 'Sp6g30850' => 'spa', 'Sp7g22960' => 'spa', 'Sp7g34010' => 'spa', 'SpUn1326_0010' => 'spa', 'TAR371G0242' => 'tar', 'TAR622G0638' => 'tar', 'TAR628G1548' => 'tar', 'TAR629G1079' => 'tar', 'TAR629G3413' => 'tar', 'THA.LOC104804249' => 'tha', 'THA.LOC104808315' => 'tha', 'THA.LOC104809238' => 'tha', 'THA.LOC104825484' => 'tha', 'Thecc.01G025500' => 'tca', 'Thecc.03G015800' => 'tca', 'Thecc.03G018000' => 'tca', 'Thecc.03G134800' => 'tca', 'Thecc.04G014700' => 'tca', 'Thhalv10006991m.g' => 'esa', 'Thhalv10012707m.g' => 'esa', 'Thhalv10015739m.g' => 'esa', 'Thhalv10024553m.g' => 'esa', 'Thhalv10024673m.g' => 'esa', 'Thhalv10029187m.g' => 'esa', 'TPR.G12971' => 'tpr', 'TPR.G29396' => 'tpr', 'TPR.G33376' => 'tpr', 'TPR.G35508' => 'tpr', 'TPR.G35516' => 'tpr', 'TPR.G37317' => 'tpr', 'TPR.G37389' => 'tpr', 'TPR.G37523' => 'tpr', 'TPR.G559' => 'tpr', 'TWI14G0070' => 'twi', 'TWI14G0729' => 'twi', 'TWI18G0596' => 'twi', 'TWI39G0780' => 'twi', 'TWI39G0850' => 'twi', 'TWI73G1052' => 'twi', 'unitig_52.g17485' => 'ugi', 'unitig_61.g26355' => 'ugi', 'vmacro01040' => 'vma', 'vmacro16731' => 'vma', 'vmacro18270' => 'vma', 'vmacro19142' => 'vma', 'vmacro19407' => 'vma', 'vmacro19408' => 'vma', 'vmacro21899' => 'vma', 'vmacro21900' => 'vma', 'vmacro21901' => 'vma', 'VMungo0251G0490' => 'vmu', 'VMungo0251G1748' => 'vmu', 'VMungo1309G0421' => 'vmu', 'Zm00001eb086500' => 'zma', 'Zm00001eb150680' => 'zma', 'Zm00001eb162330' => 'zma', 'Zm00001eb203130' => 'zma', 'Zm00001eb369480' => 'zma', 'Zm00001eb382340' => 'zma', 'Zm00001eb416360' => 'zma' ) $gf_id = 'HOM05D000902' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000902' ) $data_identifier = 'HOM05D000902' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 13, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 10, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 6, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 9, 'hma' => (int) 12, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 4, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 6, 'ppa' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 6, 'rch' => (int) 9, 'rsi' => (int) 9, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 12, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 3, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416360' $species_info = array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ) $local_species = 'cbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000902', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '663', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02470' => 'bna', 'A01p16260' => 'bna', 'A02p01680' => 'bna', 'A03p16600' => 'bna', 'A03p55660' => 'bna', 'A03p64160' => 'bna', 'A03p64170' => 'bna', 'A08p31900' => 'bna', 'A09p59530' => 'bna', 'A10p08230' => 'bna', 'A10p25090' => 'bna', 'Aa31LG3G7100' => 'aar', 'Aa31LG3G7110' => 'aar', 'Aa31LG6G13160' => 'aar', 'Aa31LG7G10770' => 'aar', 'Aa31LG7G3830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2723' => 'aag', 'Actinidia08045' => 'ach', 'Actinidia08888' => 'ach', 'Actinidia18333' => 'ach', 'Actinidia19334' => 'ach', 'Actinidia25552' => 'ach', 'Actinidia26089' => 'ach', 'Actinidia30615' => 'ach', 'Actinidia30616' => 'ach', 'Actinidia33083' => 'ach', 'Actinidia35762' => 'ach', 'Ah.02g110620' => 'amhyb', 'Ah.11g046390' => 'amhyb', 'AL1G31670' => 'aly', 'AL6G23730' => 'aly', 'AL7G14740' => 'aly', 'AL7G14750' => 'aly', 'AL7G14760' => 'aly', 'AL7G28220' => 'aly', 'AL8G24940' => 'aly', 'Aqoxy3G01665' => 'aox', 'Aqoxy3G02853' => 'aox', 'Aqoxy5G01513' => 'aox', 'Aqoxy5G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8SKA4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ75LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKDA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0LJZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7REX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZP4YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWX7I5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2QKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS0L9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPCD8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q161UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC7XCF' => 'arhy', 'AT1G19100' => 'ath', 'AT4G24970' => 'ath', 'AT4G36270' => 'ath', 'AT4G36280' => 'ath', 'AT4G36290' => 'ath', 'AT5G13130' => 'ath', 'AT5G50780' => 'ath', 'ATR0582G266' => 'atr', 'ATR0661G195' => 'atr', 'ATR1152G031' => 'atr', 'Atru.chr11.2382' => 'acertr', 'Atru.chr12.2337' => 'acertr', 'Atru.chr3.744' => 'acertr', 'Atru.chr6.1870' => 'acertr', 'Atru.chr9.2515' => 'acertr', 'AUR62004120' => 'cqu', 'AUR62005667' => 'cqu', 'AUR62007634' => 'cqu', 'AUR62008186' => 'cqu', 'AUR62008187' => 'cqu', 'AUR62008188' => 'cqu', 'AUR62027954' => 'cqu', 'AUR62028766' => 'cqu', 'AUR62028767' => 'cqu', 'AUR62028768' => 'cqu', 'AUR62028886' => 'cqu', 'AUR62029563' => 'cqu', 'AUR62038832' => 'cqu', 'BcaB01g04149' => 'bca', 'BcaB03g12940' => 'bca', 'BcaB03g13090' => 'bca', 'BcaB03g14466' => 'bca', 'BcaB05g24035' => 'bca', 'BcaC01g06050' => 'bca', 'BcaC04g19148' => 'bca', 'BcaC04g20761' => 'bca', 'BcaC06g32845' => 'bca', 'BcaC07g41274' => 'bca', 'BcaC09g50827' => 'bca', 'BcaNung00741' => 'bca', 'BcaNung00742' => 'bca', 'BcaNung01859' => 'bca', 'BcaNung03985' => 'bca', 'BcaNung03989' => 'bca', 'BcaNung05661' => 'bca', 'BolC1t00257H' => 'bol', 'BolC1t01956H' => 'bol', 'BolC2t06534H' => 'bol', 'BolC3t14334H' => 'bol', 'BolC5t30451H' => 'bol', 'BolC7t45880H' => 'bol', 'BolC7t46586H' => 'bol', 'BolC8t49301H' => 'bol', 'BolC8t51837H' => 'bol', 'BolC9t56822H' => 'bol', 'BolC9t59235H' => 'bol', 'BraA01t00234Z' => 'bra', 'BraA01t01563Z' => 'bra', 'BraA02t05147Z' => 'bra', 'BraA03t10947Z' => 'bra', 'BraA03t14633Z' => 'bra', 'BraA08t35112Z' => 'bra', 'BraA09t41330Z' => 'bra', 'BraA10t44570Z' => 'bra', 'C01p02670' => 'bna', 'C01p20260' => 'bna', 'C02p05890' => 'bna', 'C03p19530' => 'bna', 'C05p17470' => 'bna', 'C07p53900' => 'bna', 'C07p61630' => 'bna', 'C08p16800' => 'bna', 'C08p42810' => 'bna', 'C09p39480' => 'bna', 'C09p63980' => 'bna', 'CAN.G1001.7' => 'can', 'CAN.G1034.55' => 'can', 'CAN.G143.7' => 'can', 'CAN.G3340.1' => 'can', 'CAN.G358.19' => 'can', 'CAN.G373.2' => 'can', 'CAN.G674.16' => 'can', 'CAN.G674.17' => 'can', 'CAN.G674.18' => 'can', 'CAN.G732.2' => 'can', 'CAN.G732.3' => 'can', 'CAN.G993.39' => 'can', 'CANSAT01G2052' => 'cansat', 'CANSAT80G0070' => 'cansat', 'CANSAT80G0483' => 'cansat', 'CANSAT80G0625' => 'cansat', 'CARHR019690' => 'chi', 'CARHR080280' => 'chi', 'CARHR152750' => 'chi', 'CARHR152760' => 'chi', 'CARHR152770' => 'chi', 'CARHR200340' => 'chi', 'CARHR232370' => 'chi', 'CARHR244670' => 'chi', 'CARHR244680' => 'chi', 'CARHR257520' => 'chi', 'Carub.0001s1872' => 'cru', 'Carub.0006s1130' => 'cru', 'Carub.0007s0396' => 'cru', 'Carub.0007s0397' => 'cru', 'Carub.0007s1608' => 'cru', 'Carub.0008s1068' => 'cru', 'Carub.0008s1077' => 'cru', 'Ca_16158_v3' => 'car', 'Ca_17571_v3' => 'car', 'Ca_21936_v3' => 'car', 'Ca_22350_v3' => 'car', 'CBR_g22445' => 'cbr', 'CBR_g26290' => 'cbr', 'Cc04_g09610' => 'ccan', 'Cc04_g12280' => 'ccan', 'Cc07_g10230' => 'ccan', 'CDE02G0093' => 'cde', 'CDE02G0701' => 'cde', 'CDE04G1050' => 'cde', 'CDE05G1833' => 'cde', 'CDE05G3058' => 'cde', 'CDE05G3380' => 'cde', 'CDE06G0536' => 'cde', 'Cfa006923' => 'cfa', 'Cfa009402' => 'cfa', 'Cfa018751' => 'cfa', 'Cfa019164' => 'cfa', 'Cfa022935' => 'cfa', 'Ciclev10019081m.g' => 'ccl', 'Ciclev10025076m.g' => 'ccl', 'Ciclev10030712m.g' => 'ccl', 'Ciclev10033760m.g' => 'ccl', 'CiPaw.05G105600' => 'cil', 'CiPaw.08G136700' => 'cil', 'CiPaw.11G003900' => 'cil', 'CiPaw.11G023700' => 'cil', 'CiPaw.12G003700' => 'cil', 'ClCG06G017100' => 'cla', 'ClCG06G018110' => 'cla', 'ClCG07G008800' => 'cla', 'ClCG07G015330' => 'cla', 'COL.COLO4_13698' => 'col', 'COL.COLO4_16659' => 'col', 'COL.COLO4_21986' => 'col', 'COL.COLO4_24049' => 'col', 'COL.COLO4_29061' => 'col', 'COL.COLO4_29075' => 'col', 'COL.COLO4_30094' => 'col', 'Cpa.g.c33689' => 'cpa', 'Cpa.g.sc108.39' => 'cpa', 'Cpa.g.sc108.41' => 'cpa', 'Cpa.g.sc1163.1' => 'cpa', 'Cpa.g.sc4.155' => 'cpa', 'Cpa.g.sc6.194' => 'cpa', 'CsaV3_1G000340' => 'csa', 'CsaV3_1G001400' => 'csa', 'CsaV3_4G002220' => 'csa', 'CsaV3_4G005370' => 'csa', 'CSS0007487' => 'camsi', 'CSS0008066' => 'camsi', 'CSS0009120' => 'camsi', 'CSS0015512' => 'camsi', 'CSS0022409' => 'camsi', 'CSS0025358' => 'camsi', 'CSS0044547' => 'camsi', 'DCAR_013057' => 'dca', 'DCAR_015058' => 'dca', 'DCAR_016027' => 'dca', 'DCAR_017327' => 'dca', 'DCAR_020743' => 'dca', 'DCAR_026157' => 'dca', 'DCAR_032339' => 'dca', 'DCAR_032340' => 'dca', 'Dinv11200' => 'din', 'Dinv11201' => 'din', 'Dinv20631' => 'din', 'Dinv23182' => 'din', 'Dinv33466' => 'din', 'Dinv33583' => 'din', 'Dinv38565' => 'din', 'Duzib068G0200' => 'dzi', 'Duzib147G0132' => 'dzi', 'Duzib147G0635' => 'dzi', 'Duzib205G1670' => 'dzi', 'Duzib251G0606' => 'dzi', 'ECA232G3336' => 'eca', 'ECA232G3763' => 'eca', 'ECA232G4845' => 'eca', 'ECA234G1607' => 'eca', 'ECA246G0932' => 'eca', 'ECA247G0781' => 'eca', 'ECA247G1932' => 'eca', 'ECA247G2079' => 'eca', 'ECA247G3338' => 'eca', 'ECA247G4115' => 'eca', 'EL10Ac3g06552' => 'bvu', 'EL10Ac5g10721' => 'bvu', 'EL10Ac5g10722' => 'bvu', 'EL10Ac5g10723' => 'bvu', 'EL10Ac5g11361' => 'bvu', 'EL10Ac6g13553' => 'bvu', 'EL10As8g23872' => 'bvu', 'Eucgr.B00250' => 'egr', 'Eucgr.B00251' => 'egr', 'Eucgr.B03533' => 'egr', 'Eucgr.I02381' => 'egr', 'Eucgr.K02700' => 'egr', 'FAN02G0174' => 'fan', 'FAN02G3146' => 'fan', 'FAN04G1672' => 'fan', 'FAN04G2273' => 'fan', 'FAN05G2791' => 'fan', 'FAN05G4035' => 'fan', 'FAN07G0834' => 'fan', 'FAN08G1198' => 'fan', 'FAN09G4182' => 'fan', 'FAN12G0496' => 'fan', 'FAN13G1027' => 'fan', 'FAN13G2951' => 'fan', 'FAN14G0705' => 'fan', 'FAN14G0720' => 'fan', 'FAN17G0201' => 'fan', 'FAN17G2665' => 'fan', 'FAN18G1456' => 'fan', 'FAN18G1525' => 'fan', 'FAN18G3500' => 'fan', 'FAN28G2670' => 'fan', 'FvH4_1g12391' => 'fve', 'FvH4_4g23220' => 'fve', 'FvH4_5g08810' => 'fve', 'FvH4_5g28960' => 'fve', 'FvH4_6g42820' => 'fve', 'FvH4_6g51110' => 'fve', 'Glyma.02G051802' => 'gma', 'Glyma.04G185300' => 'gma', 'Glyma.05G202900' => 'gma', 'Glyma.08G010300' => 'gma', 'Glyma.16G131900' => 'gma', 'Glyma.17G087900' => 'gma', 'Gohir.A07G048600' => 'ghi', 'Gohir.A11G179000' => 'ghi', 'Gohir.A12G140900' => 'ghi', 'Gohir.A12G140950' => 'ghi', 'Gohir.A12G191700' => 'ghi', 'Gohir.A13G086300' => 'ghi', 'Gohir.D07G052900' => 'ghi', 'Gohir.D11G186600' => 'ghi', 'Gohir.D12G145575' => 'ghi', 'Gohir.D12G145650' => 'ghi', 'Gohir.D12G145725' => 'ghi', 'Gohir.D12G194050' => 'ghi', 'Gohir.D13G091800' => 'ghi', 'Gorai.001G055900' => 'gra', 'Gorai.007G198400' => 'gra', 'Gorai.008G157000' => 'gra', 'Gorai.008G157100' => 'gra', 'Gorai.008G208700' => 'gra', 'Gorai.010G138700' => 'gra', 'GSVIVG01000977001' => 'vvi', 'GSVIVG01007708001' => 'vvi', 'GSVIVG01008587001' => 'vvi', 'GSVIVG01018849001' => 'vvi', 'GSVIVG01032432001' => 'vvi', 'HanXRQChr02g0034131' => 'han', 'HanXRQChr02g0035981' => 'han', 'HanXRQChr02g0035991' => 'han', 'HanXRQChr05g0155611' => 'han', 'HanXRQChr05g0155621' => 'han', 'HanXRQChr08g0236501' => 'han', 'HanXRQChr09g0261321' => 'han', 'HanXRQChr09g0272081' => 'han', 'HanXRQChr10g0310741' => 'han', 'HanXRQChr11g0325591' => 'han', 'HanXRQChr12g0385691' => 'han', 'HanXRQChr13g0387801' => 'han', 'HanXRQChr15g0463011' => 'han', 'Haze_03826' => 'cav', 'Haze_03827' => 'cav', 'Haze_07183' => 'cav', 'Haze_07537' => 'cav', 'Haze_07539' => 'cav', 'Haze_12461' => 'cav', 'Haze_16115' => 'cav', 'Haze_16808' => 'cav', 'Haze_18531' => 'cav', 'Hma1.2p1_0046F.1_g026700' => 'hma', 'Hma1.2p1_0046F.1_g026710' => 'hma', 'Hma1.2p1_0168F.1_g074340' => 'hma', 'Hma1.2p1_0266F.1_g107030' => 'hma', 'Hma1.2p1_0266F.1_g107060' => 'hma', 'Hma1.2p1_0275F.1_g110510' => 'hma', 'Hma1.2p1_0592F.1_g185490' => 'hma', 'Hma1.2p1_0592F.1_g185500' => 'hma', 'Hma1.2p1_0592F.1_g185510' => 'hma', 'Hma1.2p1_0592F.1_g185520' => 'hma', 'Hma1.2p1_0592F.1_g185530' => 'hma', 'Hma1.2p1_0818F.1_g223450' => 'hma', 'HPP92_009708' => 'vpl', 'HPP92_009793' => 'vpl', 'HPP92_009796' => 'vpl', 'HPP92_009797' => 'vpl', 'HPP92_014940' => 'vpl', 'HPP92_014988' => 'vpl', 'Hund02463' => 'sun', 'Hund02760' => 'sun', 'Hund05071' => 'sun', 'Hund10108' => 'sun', 'Hund11204' => 'sun', 'Hund14016' => 'sun', 'Hund16464' => 'sun', 'Lalb_Chr09g0333391' => 'lal', 'Lalb_Chr11g0070461' => 'lal', 'Lalb_Chr12g0201671' => 'lal', 'Lalb_Chr13g0297161' => 'lal', 'Lj1g0002823' => 'lja', 'Lj3C1074T6' => 'lonja', 'Lj4A212T28' => 'lonja', 'Lj4g0005516' => 'lja', 'Lj4g0013705' => 'lja', 'Lj4g0027865' => 'lja', 'Lj5C92G16' => 'lonja', 'Lj5C92T12' => 'lonja', 'Lj7C596T3' => 'lonja', 'Lj9A446G59' => 'lonja', 'Lj9A482G21' => 'lonja', 'Lsat_1_v5_gn_1_28261' => 'lsa', 'Lsat_1_v5_gn_1_28281' => 'lsa', 'Lsat_1_v5_gn_1_32721' => 'lsa', 'Lsat_1_v5_gn_4_151760' => 'lsa', 'Lsat_1_v5_gn_4_2120' => 'lsa', 'Lsat_1_v5_gn_4_75761' => 'lsa', 'Lsat_1_v5_gn_5_10920' => 'lsa', 'Manes.02G099900' => 'mes', 'Manes.11G096200' => 'mes', 'Manes.12G007200' => 'mes', 'Manes.14G048300' => 'mes', 'Manes.17G114700' => 'mes', 'Mapoly0002s0070' => 'mpo', 'Mapoly0029s0099' => 'mpo', 'MBI07_g24742_MAGBIO' => 'mbi', 'MBI10_g27988_MAGBIO' => 'mbi', 'MBI11_g13057_MAGBIO' => 'mbi', 'MD02G1137200' => 'mdo', 'MD06G1137200' => 'mdo', 'MD07G1122300' => 'mdo', 'MD09G1078200' => 'mdo', 'MD13G1123700' => 'mdo', 'MD14G1151900' => 'mdo', 'MD17G1030900' => 'mdo', 'MD17G1068200' => 'mdo', 'MD17G1068600' => 'mdo', 'Medtr3g077540' => 'mtr', 'Medtr4g105530' => 'mtr', 'Medtr8g076580' => 'mtr', 'Medtr8g076590' => 'mtr', 'Medtr8g096410' => 'mtr', 'MELO3C016411.2' => 'cme', 'MELO3C017780.2' => 'cme', 'MELO3C022560.2' => 'cme', 'MELO3C026187.2' => 'cme', 'MELO3C026286.2' => 'cme', 'MELO3C032854.2' => 'cme', 'Migut.H02495' => 'egut', 'Migut.I00561' => 'egut', 'Migut.K01015' => 'egut', 'Migut.K01016' => 'egut', 'Migut.L00743' => 'egut', 'Migut.L00744' => 'egut', 'Migut.L00746' => 'egut', 'Migut.L00798' => 'egut', 'Migut.L00799' => 'egut', 'Migut.N02096' => 'egut', 'MSTRG.11259' => 'ama', 'MSTRG.23142' => 'ama', 'MSTRG.2499' => 'ama', 'Nitab4.5_0000003g0730' => 'nta', 'Nitab4.5_0000137g0020' => 'nta', 'Nitab4.5_0000721g0210' => 'nta', 'Nitab4.5_0000723g0050' => 'nta', 'Nitab4.5_0000913g0070' => 'nta', 'Nitab4.5_0001332g0040' => 'nta', 'Nitab4.5_0001771g0050' => 'nta', 'Nitab4.5_0001918g0050' => 'nta', 'Nitab4.5_0002686g0030' => 'nta', 'Nitab4.5_0003156g0020' => 'nta', 'Nitab4.5_0003383g0040' => 'nta', 'Nitab4.5_0003918g0010' => 'nta', 'Nitab4.5_0006760g0010' => 'nta', 'Nn1g05981' => 'nnu', 'Nn1g06288' => 'nnu', 'Nn3g16371' => 'nnu', 'Nn3g16786' => 'nnu', 'Nn4g22232' => 'nnu', 'Oeu005144.1' => 'oeu', 'Oeu005145.1' => 'oeu', 'Oeu011348.1' => 'oeu', 'Oeu016415.1' => 'oeu', 'Oeu023501.1' => 'oeu', 'Oeu044473.1' => 'oeu', 'Oeu048892.2' => 'oeu', 'Os01g0549200' => 'osa', 'Os02g0469300' => 'osa', 'Os04g0311100' => 'osa', 'Os06g0474900' => 'osa', 'Os10g0181700' => 'osa', 'Os11g0454800' => 'osa', 'Peaxi162Scf00037g00714' => 'pax', 'Peaxi162Scf00084g01217' => 'pax', 'Peaxi162Scf00257g00217' => 'pax', 'Peaxi162Scf00516g00215' => 'pax', 'Peaxi162Scf00689g00123' => 'pax', 'PGR044G2719' => 'pgr', 'PGR083G1360' => 'pgr', 'PGR102G2849' => 'pgr', 'PGR119G2534' => 'pgr', 'PGSC0003DMG400003538' => 'stu', 'PGSC0003DMG400028138' => 'stu', 'PGSC0003DMG400031732' => 'stu', 'PGSC0003DMG400038165' => 'stu', 'Phvul.002G284600' => 'pvu', 'Phvul.003G258200' => 'pvu', 'Phvul.009G176500' => 'pvu', 'Potri.003G167201' => 'ptr', 'Potri.005G118400' => 'ptr', 'Potri.012G089000' => 'ptr', 'Potri.012G102800' => 'ptr', 'Potri.015G079400' => 'ptr', 'Potri.015G100900' => 'ptr', 'Pp3c14_9810' => 'ppa', 'Pp3c15_10450' => 'ppa', 'Pp3c20_19150' => 'ppa', 'Pp3c23_12740' => 'ppa', 'Pp3c23_6310' => 'ppa', 'Pp3c24_3720' => 'ppa', 'Pp3c27_2580' => 'ppa', 'Pp3c9_8990' => 'ppa', 'PRCOL_00002854' => 'pco', 'Prupe.1G221200' => 'ppe', 'Prupe.3G289000' => 'ppe', 'Prupe.5G147000' => 'ppe', 'Prupe.6G157300' => 'ppe', 'Prupe.7G163400' => 'ppe', 'Psat0s2177g0040' => 'psa', 'Psat3g174760' => 'psa', 'Psat3g192160' => 'psa', 'Psat4g058520' => 'psa', 'Psat4g096840' => 'psa', 'Psat7g037320' => 'psa', 'PSO017G1274' => 'pso', 'PSO017G5166' => 'pso', 'PSO063G4558' => 'pso', 'PSO170G4458' => 'pso', 'PSO170G5005' => 'pso', 'PSO210G6156' => 'pso', 'PSO210G6635' => 'pso', 'PSO210G7397' => 'pso', 'PSO210G7700' => 'pso', 'PSO455G0035' => 'pso', 'PSO455G0180' => 'pso', 'PSO478G4515' => 'pso', 'PSO832G1305' => 'pso', 'PSO832G3489' => 'pso', 'QL02p075247' => 'qlo', 'QL03p051148' => 'qlo', 'QL05p010313' => 'qlo', 'QL06p034627' => 'qlo', 'QL10p001889' => 'qlo', 'QL10p010846' => 'qlo', 'RcHm_v2.0_Chr1g0350621' => 'rch', 'RcHm_v2.0_Chr1g0350641' => 'rch', 'RcHm_v2.0_Chr2g0092891' => 'rch', 'RcHm_v2.0_Chr2g0100251' => 'rch', 'RcHm_v2.0_Chr2g0158661' => 'rch', 'RcHm_v2.0_Chr2g0172741' => 'rch', 'RcHm_v2.0_Chr4g0429571' => 'rch', 'RcHm_v2.0_Chr5g0042471' => 'rch', 'RcHm_v2.0_Chr7g0189451' => 'rch', 'Rhsim08G0052000' => 'rsi', 'Rhsim08G0174400' => 'rsi', 'Rhsim08G0193200' => 'rsi', 'Rhsim10G0214800' => 'rsi', 'Rhsim10G0214900' => 'rsi', 'Rhsim10G0215000' => 'rsi', 'Rhsim12G0022900' => 'rsi', 'Rhsim12G0177500' => 'rsi', 'Rhsim12G0177700' => 'rsi', 'Sabra03G0122600' => 'sbr', 'Sabra05G0097400' => 'sbr', 'Sabra12G0064100' => 'sbr', 'Sabra15G0121300' => 'sbr', 'SalBow2G0642' => 'sbo', 'SalBow5G2667' => 'sbo', 'SalBow5G4873' => 'sbo', 'SalBow8G2395' => 'sbo', 'Sc03g0003290' => 'sci', 'Sc10g0010130' => 'sci', 'Sc22g0003650' => 'sci', 'Sed0001603' => 'sed', 'Sed0004259' => 'sed', 'Sed0006789' => 'sed', 'Sed0011838' => 'sed', 'Sed0012964' => 'sed', 'Sed0016383' => 'sed', 'Sed0019010' => 'sed', 'Sed0020188' => 'sed', 'SEGI_04702' => 'sgi', 'SEGI_17231' => 'sgi', 'SEGI_18877' => 'sgi', 'SEGI_25196' => 'sgi', 'SEGI_25515' => 'sgi', 'SEGI_28445' => 'sgi', 'SEGI_37452' => 'sgi', 'SGA_v2.0_scaffold188G40336' => 'sas', 'SGA_v2.0_scaffold228G43247' => 'sas', 'SGA_v2.0_scaffold280G46853' => 'sas', 'SGA_v2.0_scaffold34G13808' => 'sas', 'SGA_v2.0_scaffold40G15576' => 'sas', 'SGA_v2.0_scaffold611G53188' => 'sas', 'SGA_v2.0_scaffold78G25461' => 'sas', 'SGA_v2.0_scaffold90G27888' => 'sas', 'SHI08601' => 'shi', 'SHI08606' => 'shi', 'SHI17117' => 'shi', 'SHI17119' => 'shi', 'SMO118G0201' => 'smo', 'SMO169G0247' => 'smo', 'SMO176G0006' => 'smo', 'SMO176G0015' => 'smo', 'SMO202G0006' => 'smo', 'SMO240G0050' => 'smo', 'SMO286G0009' => 'smo', 'SMO338G0033' => 'smo', 'SMO356G0533' => 'smo', 'SMO364G0382' => 'smo', 'SMO367G0166' => 'smo', 'SMO367G1098' => 'smo', 'Solyc01g009920.3' => 'sly', 'Solyc01g099300.3' => 'sly', 'Solyc02g084700.3' => 'sly', 'Solyc03g097520.3' => 'sly', 'Solyc06g071580.3' => 'sly', 'Solyc10g081760.3' => 'sly', 'Sopen01g005480' => 'spe', 'Sopen01g042850' => 'spe', 'Sopen02g029370' => 'spe', 'Sopen03g028280' => 'spe', 'Sopen06g027870' => 'spe', 'Sopen10g032270' => 'spe', 'Sp5g18180' => 'spa', 'Sp6g12880' => 'spa', 'Sp6g30850' => 'spa', 'Sp7g22960' => 'spa', 'Sp7g34010' => 'spa', 'SpUn1326_0010' => 'spa', 'TAR371G0242' => 'tar', 'TAR622G0638' => 'tar', 'TAR628G1548' => 'tar', 'TAR629G1079' => 'tar', 'TAR629G3413' => 'tar', 'THA.LOC104804249' => 'tha', 'THA.LOC104808315' => 'tha', 'THA.LOC104809238' => 'tha', 'THA.LOC104825484' => 'tha', 'Thecc.01G025500' => 'tca', 'Thecc.03G015800' => 'tca', 'Thecc.03G018000' => 'tca', 'Thecc.03G134800' => 'tca', 'Thecc.04G014700' => 'tca', 'Thhalv10006991m.g' => 'esa', 'Thhalv10012707m.g' => 'esa', 'Thhalv10015739m.g' => 'esa', 'Thhalv10024553m.g' => 'esa', 'Thhalv10024673m.g' => 'esa', 'Thhalv10029187m.g' => 'esa', 'TPR.G12971' => 'tpr', 'TPR.G29396' => 'tpr', 'TPR.G33376' => 'tpr', 'TPR.G35508' => 'tpr', 'TPR.G35516' => 'tpr', 'TPR.G37317' => 'tpr', 'TPR.G37389' => 'tpr', 'TPR.G37523' => 'tpr', 'TPR.G559' => 'tpr', 'TWI14G0070' => 'twi', 'TWI14G0729' => 'twi', 'TWI18G0596' => 'twi', 'TWI39G0780' => 'twi', 'TWI39G0850' => 'twi', 'TWI73G1052' => 'twi', 'unitig_52.g17485' => 'ugi', 'unitig_61.g26355' => 'ugi', 'vmacro01040' => 'vma', 'vmacro16731' => 'vma', 'vmacro18270' => 'vma', 'vmacro19142' => 'vma', 'vmacro19407' => 'vma', 'vmacro19408' => 'vma', 'vmacro21899' => 'vma', 'vmacro21900' => 'vma', 'vmacro21901' => 'vma', 'VMungo0251G0490' => 'vmu', 'VMungo0251G1748' => 'vmu', 'VMungo1309G0421' => 'vmu', 'Zm00001eb086500' => 'zma', 'Zm00001eb150680' => 'zma', 'Zm00001eb162330' => 'zma', 'Zm00001eb203130' => 'zma', 'Zm00001eb369480' => 'zma', 'Zm00001eb382340' => 'zma', 'Zm00001eb416360' => 'zma' ), 'gf_id' => 'HOM05D000902', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000902' ), 'data_identifier' => 'HOM05D000902', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000902', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '663', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02470' => 'bna', 'A01p16260' => 'bna', 'A02p01680' => 'bna', 'A03p16600' => 'bna', 'A03p55660' => 'bna', 'A03p64160' => 'bna', 'A03p64170' => 'bna', 'A08p31900' => 'bna', 'A09p59530' => 'bna', 'A10p08230' => 'bna', 'A10p25090' => 'bna', 'Aa31LG3G7100' => 'aar', 'Aa31LG3G7110' => 'aar', 'Aa31LG6G13160' => 'aar', 'Aa31LG7G10770' => 'aar', 'Aa31LG7G3830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2723' => 'aag', 'Actinidia08045' => 'ach', 'Actinidia08888' => 'ach', 'Actinidia18333' => 'ach', 'Actinidia19334' => 'ach', 'Actinidia25552' => 'ach', 'Actinidia26089' => 'ach', 'Actinidia30615' => 'ach', 'Actinidia30616' => 'ach', 'Actinidia33083' => 'ach', 'Actinidia35762' => 'ach', 'Ah.02g110620' => 'amhyb', 'Ah.11g046390' => 'amhyb', 'AL1G31670' => 'aly', 'AL6G23730' => 'aly', 'AL7G14740' => 'aly', 'AL7G14750' => 'aly', 'AL7G14760' => 'aly', 'AL7G28220' => 'aly', 'AL8G24940' => 'aly', 'Aqoxy3G01665' => 'aox', 'Aqoxy3G02853' => 'aox', 'Aqoxy5G01513' => 'aox', 'Aqoxy5G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8SKA4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ75LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKDA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0LJZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7REX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZP4YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWX7I5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2QKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS0L9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPCD8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q161UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC7XCF' => 'arhy', 'AT1G19100' => 'ath', 'AT4G24970' => 'ath', 'AT4G36270' => 'ath', 'AT4G36280' => 'ath', 'AT4G36290' => 'ath', 'AT5G13130' => 'ath', 'AT5G50780' => 'ath', 'ATR0582G266' => 'atr', 'ATR0661G195' => 'atr', 'ATR1152G031' => 'atr', 'Atru.chr11.2382' => 'acertr', 'Atru.chr12.2337' => 'acertr', 'Atru.chr3.744' => 'acertr', 'Atru.chr6.1870' => 'acertr', 'Atru.chr9.2515' => 'acertr', 'AUR62004120' => 'cqu', 'AUR62005667' => 'cqu', 'AUR62007634' => 'cqu', 'AUR62008186' => 'cqu', 'AUR62008187' => 'cqu', 'AUR62008188' => 'cqu', 'AUR62027954' => 'cqu', 'AUR62028766' => 'cqu', 'AUR62028767' => 'cqu', 'AUR62028768' => 'cqu', 'AUR62028886' => 'cqu', 'AUR62029563' => 'cqu', 'AUR62038832' => 'cqu', 'BcaB01g04149' => 'bca', 'BcaB03g12940' => 'bca', 'BcaB03g13090' => 'bca', 'BcaB03g14466' => 'bca', 'BcaB05g24035' => 'bca', 'BcaC01g06050' => 'bca', 'BcaC04g19148' => 'bca', 'BcaC04g20761' => 'bca', 'BcaC06g32845' => 'bca', 'BcaC07g41274' => 'bca', 'BcaC09g50827' => 'bca', 'BcaNung00741' => 'bca', 'BcaNung00742' => 'bca', 'BcaNung01859' => 'bca', 'BcaNung03985' => 'bca', 'BcaNung03989' => 'bca', 'BcaNung05661' => 'bca', 'BolC1t00257H' => 'bol', 'BolC1t01956H' => 'bol', 'BolC2t06534H' => 'bol', 'BolC3t14334H' => 'bol', 'BolC5t30451H' => 'bol', 'BolC7t45880H' => 'bol', 'BolC7t46586H' => 'bol', 'BolC8t49301H' => 'bol', 'BolC8t51837H' => 'bol', 'BolC9t56822H' => 'bol', 'BolC9t59235H' => 'bol', 'BraA01t00234Z' => 'bra', 'BraA01t01563Z' => 'bra', 'BraA02t05147Z' => 'bra', 'BraA03t10947Z' => 'bra', 'BraA03t14633Z' => 'bra', 'BraA08t35112Z' => 'bra', 'BraA09t41330Z' => 'bra', 'BraA10t44570Z' => 'bra', 'C01p02670' => 'bna', 'C01p20260' => 'bna', 'C02p05890' => 'bna', 'C03p19530' => 'bna', 'C05p17470' => 'bna', 'C07p53900' => 'bna', 'C07p61630' => 'bna', 'C08p16800' => 'bna', 'C08p42810' => 'bna', 'C09p39480' => 'bna', 'C09p63980' => 'bna', 'CAN.G1001.7' => 'can', 'CAN.G1034.55' => 'can', 'CAN.G143.7' => 'can', 'CAN.G3340.1' => 'can', 'CAN.G358.19' => 'can', 'CAN.G373.2' => 'can', 'CAN.G674.16' => 'can', 'CAN.G674.17' => 'can', 'CAN.G674.18' => 'can', 'CAN.G732.2' => 'can', 'CAN.G732.3' => 'can', 'CAN.G993.39' => 'can', 'CANSAT01G2052' => 'cansat', 'CANSAT80G0070' => 'cansat', 'CANSAT80G0483' => 'cansat', 'CANSAT80G0625' => 'cansat', 'CARHR019690' => 'chi', 'CARHR080280' => 'chi', 'CARHR152750' => 'chi', 'CARHR152760' => 'chi', 'CARHR152770' => 'chi', 'CARHR200340' => 'chi', 'CARHR232370' => 'chi', 'CARHR244670' => 'chi', 'CARHR244680' => 'chi', 'CARHR257520' => 'chi', 'Carub.0001s1872' => 'cru', 'Carub.0006s1130' => 'cru', 'Carub.0007s0396' => 'cru', 'Carub.0007s0397' => 'cru', 'Carub.0007s1608' => 'cru', 'Carub.0008s1068' => 'cru', 'Carub.0008s1077' => 'cru', 'Ca_16158_v3' => 'car', 'Ca_17571_v3' => 'car', 'Ca_21936_v3' => 'car', 'Ca_22350_v3' => 'car', 'CBR_g22445' => 'cbr', 'CBR_g26290' => 'cbr', 'Cc04_g09610' => 'ccan', 'Cc04_g12280' => 'ccan', 'Cc07_g10230' => 'ccan', 'CDE02G0093' => 'cde', 'CDE02G0701' => 'cde', 'CDE04G1050' => 'cde', 'CDE05G1833' => 'cde', 'CDE05G3058' => 'cde', 'CDE05G3380' => 'cde', 'CDE06G0536' => 'cde', 'Cfa006923' => 'cfa', 'Cfa009402' => 'cfa', 'Cfa018751' => 'cfa', 'Cfa019164' => 'cfa', 'Cfa022935' => 'cfa', 'Ciclev10019081m.g' => 'ccl', 'Ciclev10025076m.g' => 'ccl', 'Ciclev10030712m.g' => 'ccl', 'Ciclev10033760m.g' => 'ccl', 'CiPaw.05G105600' => 'cil', 'CiPaw.08G136700' => 'cil', 'CiPaw.11G003900' => 'cil', 'CiPaw.11G023700' => 'cil', 'CiPaw.12G003700' => 'cil', 'ClCG06G017100' => 'cla', 'ClCG06G018110' => 'cla', 'ClCG07G008800' => 'cla', 'ClCG07G015330' => 'cla', 'COL.COLO4_13698' => 'col', 'COL.COLO4_16659' => 'col', 'COL.COLO4_21986' => 'col', 'COL.COLO4_24049' => 'col', 'COL.COLO4_29061' => 'col', 'COL.COLO4_29075' => 'col', 'COL.COLO4_30094' => 'col', 'Cpa.g.c33689' => 'cpa', 'Cpa.g.sc108.39' => 'cpa', 'Cpa.g.sc108.41' => 'cpa', 'Cpa.g.sc1163.1' => 'cpa', 'Cpa.g.sc4.155' => 'cpa', 'Cpa.g.sc6.194' => 'cpa', 'CsaV3_1G000340' => 'csa', 'CsaV3_1G001400' => 'csa', 'CsaV3_4G002220' => 'csa', 'CsaV3_4G005370' => 'csa', 'CSS0007487' => 'camsi', 'CSS0008066' => 'camsi', 'CSS0009120' => 'camsi', 'CSS0015512' => 'camsi', 'CSS0022409' => 'camsi', 'CSS0025358' => 'camsi', 'CSS0044547' => 'camsi', 'DCAR_013057' => 'dca', 'DCAR_015058' => 'dca', 'DCAR_016027' => 'dca', 'DCAR_017327' => 'dca', 'DCAR_020743' => 'dca', 'DCAR_026157' => 'dca', 'DCAR_032339' => 'dca', 'DCAR_032340' => 'dca', 'Dinv11200' => 'din', 'Dinv11201' => 'din', 'Dinv20631' => 'din', 'Dinv23182' => 'din', 'Dinv33466' => 'din', 'Dinv33583' => 'din', 'Dinv38565' => 'din', 'Duzib068G0200' => 'dzi', 'Duzib147G0132' => 'dzi', 'Duzib147G0635' => 'dzi', 'Duzib205G1670' => 'dzi', 'Duzib251G0606' => 'dzi', 'ECA232G3336' => 'eca', 'ECA232G3763' => 'eca', 'ECA232G4845' => 'eca', 'ECA234G1607' => 'eca', 'ECA246G0932' => 'eca', 'ECA247G0781' => 'eca', 'ECA247G1932' => 'eca', 'ECA247G2079' => 'eca', 'ECA247G3338' => 'eca', 'ECA247G4115' => 'eca', 'EL10Ac3g06552' => 'bvu', 'EL10Ac5g10721' => 'bvu', 'EL10Ac5g10722' => 'bvu', 'EL10Ac5g10723' => 'bvu', 'EL10Ac5g11361' => 'bvu', 'EL10Ac6g13553' => 'bvu', 'EL10As8g23872' => 'bvu', 'Eucgr.B00250' => 'egr', 'Eucgr.B00251' => 'egr', 'Eucgr.B03533' => 'egr', 'Eucgr.I02381' => 'egr', 'Eucgr.K02700' => 'egr', 'FAN02G0174' => 'fan', 'FAN02G3146' => 'fan', 'FAN04G1672' => 'fan', 'FAN04G2273' => 'fan', 'FAN05G2791' => 'fan', 'FAN05G4035' => 'fan', 'FAN07G0834' => 'fan', 'FAN08G1198' => 'fan', 'FAN09G4182' => 'fan', 'FAN12G0496' => 'fan', 'FAN13G1027' => 'fan', 'FAN13G2951' => 'fan', 'FAN14G0705' => 'fan', 'FAN14G0720' => 'fan', 'FAN17G0201' => 'fan', 'FAN17G2665' => 'fan', 'FAN18G1456' => 'fan', 'FAN18G1525' => 'fan', 'FAN18G3500' => 'fan', 'FAN28G2670' => 'fan', 'FvH4_1g12391' => 'fve', 'FvH4_4g23220' => 'fve', 'FvH4_5g08810' => 'fve', 'FvH4_5g28960' => 'fve', 'FvH4_6g42820' => 'fve', 'FvH4_6g51110' => 'fve', 'Glyma.02G051802' => 'gma', 'Glyma.04G185300' => 'gma', 'Glyma.05G202900' => 'gma', 'Glyma.08G010300' => 'gma', 'Glyma.16G131900' => 'gma', 'Glyma.17G087900' => 'gma', 'Gohir.A07G048600' => 'ghi', 'Gohir.A11G179000' => 'ghi', 'Gohir.A12G140900' => 'ghi', 'Gohir.A12G140950' => 'ghi', 'Gohir.A12G191700' => 'ghi', 'Gohir.A13G086300' => 'ghi', 'Gohir.D07G052900' => 'ghi', 'Gohir.D11G186600' => 'ghi', 'Gohir.D12G145575' => 'ghi', 'Gohir.D12G145650' => 'ghi', 'Gohir.D12G145725' => 'ghi', 'Gohir.D12G194050' => 'ghi', 'Gohir.D13G091800' => 'ghi', 'Gorai.001G055900' => 'gra', 'Gorai.007G198400' => 'gra', 'Gorai.008G157000' => 'gra', 'Gorai.008G157100' => 'gra', 'Gorai.008G208700' => 'gra', 'Gorai.010G138700' => 'gra', 'GSVIVG01000977001' => 'vvi', 'GSVIVG01007708001' => 'vvi', 'GSVIVG01008587001' => 'vvi', 'GSVIVG01018849001' => 'vvi', 'GSVIVG01032432001' => 'vvi', 'HanXRQChr02g0034131' => 'han', 'HanXRQChr02g0035981' => 'han', 'HanXRQChr02g0035991' => 'han', 'HanXRQChr05g0155611' => 'han', 'HanXRQChr05g0155621' => 'han', 'HanXRQChr08g0236501' => 'han', 'HanXRQChr09g0261321' => 'han', 'HanXRQChr09g0272081' => 'han', 'HanXRQChr10g0310741' => 'han', 'HanXRQChr11g0325591' => 'han', 'HanXRQChr12g0385691' => 'han', 'HanXRQChr13g0387801' => 'han', 'HanXRQChr15g0463011' => 'han', 'Haze_03826' => 'cav', 'Haze_03827' => 'cav', 'Haze_07183' => 'cav', 'Haze_07537' => 'cav', 'Haze_07539' => 'cav', 'Haze_12461' => 'cav', 'Haze_16115' => 'cav', 'Haze_16808' => 'cav', 'Haze_18531' => 'cav', 'Hma1.2p1_0046F.1_g026700' => 'hma', 'Hma1.2p1_0046F.1_g026710' => 'hma', 'Hma1.2p1_0168F.1_g074340' => 'hma', 'Hma1.2p1_0266F.1_g107030' => 'hma', 'Hma1.2p1_0266F.1_g107060' => 'hma', 'Hma1.2p1_0275F.1_g110510' => 'hma', 'Hma1.2p1_0592F.1_g185490' => 'hma', 'Hma1.2p1_0592F.1_g185500' => 'hma', 'Hma1.2p1_0592F.1_g185510' => 'hma', 'Hma1.2p1_0592F.1_g185520' => 'hma', 'Hma1.2p1_0592F.1_g185530' => 'hma', 'Hma1.2p1_0818F.1_g223450' => 'hma', 'HPP92_009708' => 'vpl', 'HPP92_009793' => 'vpl', 'HPP92_009796' => 'vpl', 'HPP92_009797' => 'vpl', 'HPP92_014940' => 'vpl', 'HPP92_014988' => 'vpl', 'Hund02463' => 'sun', 'Hund02760' => 'sun', 'Hund05071' => 'sun', 'Hund10108' => 'sun', 'Hund11204' => 'sun', 'Hund14016' => 'sun', 'Hund16464' => 'sun', 'Lalb_Chr09g0333391' => 'lal', 'Lalb_Chr11g0070461' => 'lal', 'Lalb_Chr12g0201671' => 'lal', 'Lalb_Chr13g0297161' => 'lal', 'Lj1g0002823' => 'lja', 'Lj3C1074T6' => 'lonja', 'Lj4A212T28' => 'lonja', 'Lj4g0005516' => 'lja', 'Lj4g0013705' => 'lja', 'Lj4g0027865' => 'lja', 'Lj5C92G16' => 'lonja', 'Lj5C92T12' => 'lonja', 'Lj7C596T3' => 'lonja', 'Lj9A446G59' => 'lonja', 'Lj9A482G21' => 'lonja', 'Lsat_1_v5_gn_1_28261' => 'lsa', 'Lsat_1_v5_gn_1_28281' => 'lsa', 'Lsat_1_v5_gn_1_32721' => 'lsa', 'Lsat_1_v5_gn_4_151760' => 'lsa', 'Lsat_1_v5_gn_4_2120' => 'lsa', 'Lsat_1_v5_gn_4_75761' => 'lsa', 'Lsat_1_v5_gn_5_10920' => 'lsa', 'Manes.02G099900' => 'mes', 'Manes.11G096200' => 'mes', 'Manes.12G007200' => 'mes', 'Manes.14G048300' => 'mes', 'Manes.17G114700' => 'mes', 'Mapoly0002s0070' => 'mpo', 'Mapoly0029s0099' => 'mpo', 'MBI07_g24742_MAGBIO' => 'mbi', 'MBI10_g27988_MAGBIO' => 'mbi', 'MBI11_g13057_MAGBIO' => 'mbi', 'MD02G1137200' => 'mdo', 'MD06G1137200' => 'mdo', 'MD07G1122300' => 'mdo', 'MD09G1078200' => 'mdo', 'MD13G1123700' => 'mdo', 'MD14G1151900' => 'mdo', 'MD17G1030900' => 'mdo', 'MD17G1068200' => 'mdo', 'MD17G1068600' => 'mdo', 'Medtr3g077540' => 'mtr', 'Medtr4g105530' => 'mtr', 'Medtr8g076580' => 'mtr', 'Medtr8g076590' => 'mtr', 'Medtr8g096410' => 'mtr', 'MELO3C016411.2' => 'cme', 'MELO3C017780.2' => 'cme', 'MELO3C022560.2' => 'cme', 'MELO3C026187.2' => 'cme', 'MELO3C026286.2' => 'cme', 'MELO3C032854.2' => 'cme', 'Migut.H02495' => 'egut', 'Migut.I00561' => 'egut', 'Migut.K01015' => 'egut', 'Migut.K01016' => 'egut', 'Migut.L00743' => 'egut', 'Migut.L00744' => 'egut', 'Migut.L00746' => 'egut', 'Migut.L00798' => 'egut', 'Migut.L00799' => 'egut', 'Migut.N02096' => 'egut', 'MSTRG.11259' => 'ama', 'MSTRG.23142' => 'ama', 'MSTRG.2499' => 'ama', 'Nitab4.5_0000003g0730' => 'nta', 'Nitab4.5_0000137g0020' => 'nta', 'Nitab4.5_0000721g0210' => 'nta', 'Nitab4.5_0000723g0050' => 'nta', 'Nitab4.5_0000913g0070' => 'nta', 'Nitab4.5_0001332g0040' => 'nta', 'Nitab4.5_0001771g0050' => 'nta', 'Nitab4.5_0001918g0050' => 'nta', 'Nitab4.5_0002686g0030' => 'nta', 'Nitab4.5_0003156g0020' => 'nta', 'Nitab4.5_0003383g0040' => 'nta', 'Nitab4.5_0003918g0010' => 'nta', 'Nitab4.5_0006760g0010' => 'nta', 'Nn1g05981' => 'nnu', 'Nn1g06288' => 'nnu', 'Nn3g16371' => 'nnu', 'Nn3g16786' => 'nnu', 'Nn4g22232' => 'nnu', 'Oeu005144.1' => 'oeu', 'Oeu005145.1' => 'oeu', 'Oeu011348.1' => 'oeu', 'Oeu016415.1' => 'oeu', 'Oeu023501.1' => 'oeu', 'Oeu044473.1' => 'oeu', 'Oeu048892.2' => 'oeu', 'Os01g0549200' => 'osa', 'Os02g0469300' => 'osa', 'Os04g0311100' => 'osa', 'Os06g0474900' => 'osa', 'Os10g0181700' => 'osa', 'Os11g0454800' => 'osa', 'Peaxi162Scf00037g00714' => 'pax', 'Peaxi162Scf00084g01217' => 'pax', 'Peaxi162Scf00257g00217' => 'pax', 'Peaxi162Scf00516g00215' => 'pax', 'Peaxi162Scf00689g00123' => 'pax', 'PGR044G2719' => 'pgr', 'PGR083G1360' => 'pgr', 'PGR102G2849' => 'pgr', 'PGR119G2534' => 'pgr', 'PGSC0003DMG400003538' => 'stu', 'PGSC0003DMG400028138' => 'stu', 'PGSC0003DMG400031732' => 'stu', 'PGSC0003DMG400038165' => 'stu', 'Phvul.002G284600' => 'pvu', 'Phvul.003G258200' => 'pvu', 'Phvul.009G176500' => 'pvu', 'Potri.003G167201' => 'ptr', 'Potri.005G118400' => 'ptr', 'Potri.012G089000' => 'ptr', 'Potri.012G102800' => 'ptr', 'Potri.015G079400' => 'ptr', 'Potri.015G100900' => 'ptr', 'Pp3c14_9810' => 'ppa', 'Pp3c15_10450' => 'ppa', 'Pp3c20_19150' => 'ppa', 'Pp3c23_12740' => 'ppa', 'Pp3c23_6310' => 'ppa', 'Pp3c24_3720' => 'ppa', 'Pp3c27_2580' => 'ppa', 'Pp3c9_8990' => 'ppa', 'PRCOL_00002854' => 'pco', 'Prupe.1G221200' => 'ppe', 'Prupe.3G289000' => 'ppe', 'Prupe.5G147000' => 'ppe', 'Prupe.6G157300' => 'ppe', 'Prupe.7G163400' => 'ppe', 'Psat0s2177g0040' => 'psa', 'Psat3g174760' => 'psa', 'Psat3g192160' => 'psa', 'Psat4g058520' => 'psa', 'Psat4g096840' => 'psa', 'Psat7g037320' => 'psa', 'PSO017G1274' => 'pso', 'PSO017G5166' => 'pso', 'PSO063G4558' => 'pso', 'PSO170G4458' => 'pso', 'PSO170G5005' => 'pso', 'PSO210G6156' => 'pso', 'PSO210G6635' => 'pso', 'PSO210G7397' => 'pso', 'PSO210G7700' => 'pso', 'PSO455G0035' => 'pso', 'PSO455G0180' => 'pso', 'PSO478G4515' => 'pso', 'PSO832G1305' => 'pso', 'PSO832G3489' => 'pso', 'QL02p075247' => 'qlo', 'QL03p051148' => 'qlo', 'QL05p010313' => 'qlo', 'QL06p034627' => 'qlo', 'QL10p001889' => 'qlo', 'QL10p010846' => 'qlo', 'RcHm_v2.0_Chr1g0350621' => 'rch', 'RcHm_v2.0_Chr1g0350641' => 'rch', 'RcHm_v2.0_Chr2g0092891' => 'rch', 'RcHm_v2.0_Chr2g0100251' => 'rch', 'RcHm_v2.0_Chr2g0158661' => 'rch', 'RcHm_v2.0_Chr2g0172741' => 'rch', 'RcHm_v2.0_Chr4g0429571' => 'rch', 'RcHm_v2.0_Chr5g0042471' => 'rch', 'RcHm_v2.0_Chr7g0189451' => 'rch', 'Rhsim08G0052000' => 'rsi', 'Rhsim08G0174400' => 'rsi', 'Rhsim08G0193200' => 'rsi', 'Rhsim10G0214800' => 'rsi', 'Rhsim10G0214900' => 'rsi', 'Rhsim10G0215000' => 'rsi', 'Rhsim12G0022900' => 'rsi', 'Rhsim12G0177500' => 'rsi', 'Rhsim12G0177700' => 'rsi', 'Sabra03G0122600' => 'sbr', 'Sabra05G0097400' => 'sbr', 'Sabra12G0064100' => 'sbr', 'Sabra15G0121300' => 'sbr', 'SalBow2G0642' => 'sbo', 'SalBow5G2667' => 'sbo', 'SalBow5G4873' => 'sbo', 'SalBow8G2395' => 'sbo', 'Sc03g0003290' => 'sci', 'Sc10g0010130' => 'sci', 'Sc22g0003650' => 'sci', 'Sed0001603' => 'sed', 'Sed0004259' => 'sed', 'Sed0006789' => 'sed', 'Sed0011838' => 'sed', 'Sed0012964' => 'sed', 'Sed0016383' => 'sed', 'Sed0019010' => 'sed', 'Sed0020188' => 'sed', 'SEGI_04702' => 'sgi', 'SEGI_17231' => 'sgi', 'SEGI_18877' => 'sgi', 'SEGI_25196' => 'sgi', 'SEGI_25515' => 'sgi', 'SEGI_28445' => 'sgi', 'SEGI_37452' => 'sgi', 'SGA_v2.0_scaffold188G40336' => 'sas', 'SGA_v2.0_scaffold228G43247' => 'sas', 'SGA_v2.0_scaffold280G46853' => 'sas', 'SGA_v2.0_scaffold34G13808' => 'sas', 'SGA_v2.0_scaffold40G15576' => 'sas', 'SGA_v2.0_scaffold611G53188' => 'sas', 'SGA_v2.0_scaffold78G25461' => 'sas', 'SGA_v2.0_scaffold90G27888' => 'sas', 'SHI08601' => 'shi', 'SHI08606' => 'shi', 'SHI17117' => 'shi', 'SHI17119' => 'shi', 'SMO118G0201' => 'smo', 'SMO169G0247' => 'smo', 'SMO176G0006' => 'smo', 'SMO176G0015' => 'smo', 'SMO202G0006' => 'smo', 'SMO240G0050' => 'smo', 'SMO286G0009' => 'smo', 'SMO338G0033' => 'smo', 'SMO356G0533' => 'smo', 'SMO364G0382' => 'smo', 'SMO367G0166' => 'smo', 'SMO367G1098' => 'smo', 'Solyc01g009920.3' => 'sly', 'Solyc01g099300.3' => 'sly', 'Solyc02g084700.3' => 'sly', 'Solyc03g097520.3' => 'sly', 'Solyc06g071580.3' => 'sly', 'Solyc10g081760.3' => 'sly', 'Sopen01g005480' => 'spe', 'Sopen01g042850' => 'spe', 'Sopen02g029370' => 'spe', 'Sopen03g028280' => 'spe', 'Sopen06g027870' => 'spe', 'Sopen10g032270' => 'spe', 'Sp5g18180' => 'spa', 'Sp6g12880' => 'spa', 'Sp6g30850' => 'spa', 'Sp7g22960' => 'spa', 'Sp7g34010' => 'spa', 'SpUn1326_0010' => 'spa', 'TAR371G0242' => 'tar', 'TAR622G0638' => 'tar', 'TAR628G1548' => 'tar', 'TAR629G1079' => 'tar', 'TAR629G3413' => 'tar', 'THA.LOC104804249' => 'tha', 'THA.LOC104808315' => 'tha', 'THA.LOC104809238' => 'tha', 'THA.LOC104825484' => 'tha', 'Thecc.01G025500' => 'tca', 'Thecc.03G015800' => 'tca', 'Thecc.03G018000' => 'tca', 'Thecc.03G134800' => 'tca', 'Thecc.04G014700' => 'tca', 'Thhalv10006991m.g' => 'esa', 'Thhalv10012707m.g' => 'esa', 'Thhalv10015739m.g' => 'esa', 'Thhalv10024553m.g' => 'esa', 'Thhalv10024673m.g' => 'esa', 'Thhalv10029187m.g' => 'esa', 'TPR.G12971' => 'tpr', 'TPR.G29396' => 'tpr', 'TPR.G33376' => 'tpr', 'TPR.G35508' => 'tpr', 'TPR.G35516' => 'tpr', 'TPR.G37317' => 'tpr', 'TPR.G37389' => 'tpr', 'TPR.G37523' => 'tpr', 'TPR.G559' => 'tpr', 'TWI14G0070' => 'twi', 'TWI14G0729' => 'twi', 'TWI18G0596' => 'twi', 'TWI39G0780' => 'twi', 'TWI39G0850' => 'twi', 'TWI73G1052' => 'twi', 'unitig_52.g17485' => 'ugi', 'unitig_61.g26355' => 'ugi', 'vmacro01040' => 'vma', 'vmacro16731' => 'vma', 'vmacro18270' => 'vma', 'vmacro19142' => 'vma', 'vmacro19407' => 'vma', 'vmacro19408' => 'vma', 'vmacro21899' => 'vma', 'vmacro21900' => 'vma', 'vmacro21901' => 'vma', 'VMungo0251G0490' => 'vmu', 'VMungo0251G1748' => 'vmu', 'VMungo1309G0421' => 'vmu', 'Zm00001eb086500' => 'zma', 'Zm00001eb150680' => 'zma', 'Zm00001eb162330' => 'zma', 'Zm00001eb203130' => 'zma', 'Zm00001eb369480' => 'zma', 'Zm00001eb382340' => 'zma', 'Zm00001eb416360' => 'zma' ) $gf_id = 'HOM05D000902' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000902' ) $data_identifier = 'HOM05D000902' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 13, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 10, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 6, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 9, 'hma' => (int) 12, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 4, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 6, 'ppa' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 6, 'rch' => (int) 9, 'rsi' => (int) 9, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 12, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 3, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416360' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000902', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '663', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02470' => 'bna', 'A01p16260' => 'bna', 'A02p01680' => 'bna', 'A03p16600' => 'bna', 'A03p55660' => 'bna', 'A03p64160' => 'bna', 'A03p64170' => 'bna', 'A08p31900' => 'bna', 'A09p59530' => 'bna', 'A10p08230' => 'bna', 'A10p25090' => 'bna', 'Aa31LG3G7100' => 'aar', 'Aa31LG3G7110' => 'aar', 'Aa31LG6G13160' => 'aar', 'Aa31LG7G10770' => 'aar', 'Aa31LG7G3830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2723' => 'aag', 'Actinidia08045' => 'ach', 'Actinidia08888' => 'ach', 'Actinidia18333' => 'ach', 'Actinidia19334' => 'ach', 'Actinidia25552' => 'ach', 'Actinidia26089' => 'ach', 'Actinidia30615' => 'ach', 'Actinidia30616' => 'ach', 'Actinidia33083' => 'ach', 'Actinidia35762' => 'ach', 'Ah.02g110620' => 'amhyb', 'Ah.11g046390' => 'amhyb', 'AL1G31670' => 'aly', 'AL6G23730' => 'aly', 'AL7G14740' => 'aly', 'AL7G14750' => 'aly', 'AL7G14760' => 'aly', 'AL7G28220' => 'aly', 'AL8G24940' => 'aly', 'Aqoxy3G01665' => 'aox', 'Aqoxy3G02853' => 'aox', 'Aqoxy5G01513' => 'aox', 'Aqoxy5G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8SKA4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ75LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKDA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0LJZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7REX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZP4YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWX7I5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2QKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS0L9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPCD8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q161UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC7XCF' => 'arhy', 'AT1G19100' => 'ath', 'AT4G24970' => 'ath', 'AT4G36270' => 'ath', 'AT4G36280' => 'ath', 'AT4G36290' => 'ath', 'AT5G13130' => 'ath', 'AT5G50780' => 'ath', 'ATR0582G266' => 'atr', 'ATR0661G195' => 'atr', 'ATR1152G031' => 'atr', 'Atru.chr11.2382' => 'acertr', 'Atru.chr12.2337' => 'acertr', 'Atru.chr3.744' => 'acertr', 'Atru.chr6.1870' => 'acertr', 'Atru.chr9.2515' => 'acertr', 'AUR62004120' => 'cqu', 'AUR62005667' => 'cqu', 'AUR62007634' => 'cqu', 'AUR62008186' => 'cqu', 'AUR62008187' => 'cqu', 'AUR62008188' => 'cqu', 'AUR62027954' => 'cqu', 'AUR62028766' => 'cqu', 'AUR62028767' => 'cqu', 'AUR62028768' => 'cqu', 'AUR62028886' => 'cqu', 'AUR62029563' => 'cqu', 'AUR62038832' => 'cqu', 'BcaB01g04149' => 'bca', 'BcaB03g12940' => 'bca', 'BcaB03g13090' => 'bca', 'BcaB03g14466' => 'bca', 'BcaB05g24035' => 'bca', 'BcaC01g06050' => 'bca', 'BcaC04g19148' => 'bca', 'BcaC04g20761' => 'bca', 'BcaC06g32845' => 'bca', 'BcaC07g41274' => 'bca', 'BcaC09g50827' => 'bca', 'BcaNung00741' => 'bca', 'BcaNung00742' => 'bca', 'BcaNung01859' => 'bca', 'BcaNung03985' => 'bca', 'BcaNung03989' => 'bca', 'BcaNung05661' => 'bca', 'BolC1t00257H' => 'bol', 'BolC1t01956H' => 'bol', 'BolC2t06534H' => 'bol', 'BolC3t14334H' => 'bol', 'BolC5t30451H' => 'bol', 'BolC7t45880H' => 'bol', 'BolC7t46586H' => 'bol', 'BolC8t49301H' => 'bol', 'BolC8t51837H' => 'bol', 'BolC9t56822H' => 'bol', 'BolC9t59235H' => 'bol', 'BraA01t00234Z' => 'bra', 'BraA01t01563Z' => 'bra', 'BraA02t05147Z' => 'bra', 'BraA03t10947Z' => 'bra', 'BraA03t14633Z' => 'bra', 'BraA08t35112Z' => 'bra', 'BraA09t41330Z' => 'bra', 'BraA10t44570Z' => 'bra', 'C01p02670' => 'bna', 'C01p20260' => 'bna', 'C02p05890' => 'bna', 'C03p19530' => 'bna', 'C05p17470' => 'bna', 'C07p53900' => 'bna', 'C07p61630' => 'bna', 'C08p16800' => 'bna', 'C08p42810' => 'bna', 'C09p39480' => 'bna', 'C09p63980' => 'bna', 'CAN.G1001.7' => 'can', 'CAN.G1034.55' => 'can', 'CAN.G143.7' => 'can', 'CAN.G3340.1' => 'can', 'CAN.G358.19' => 'can', 'CAN.G373.2' => 'can', 'CAN.G674.16' => 'can', 'CAN.G674.17' => 'can', 'CAN.G674.18' => 'can', 'CAN.G732.2' => 'can', 'CAN.G732.3' => 'can', 'CAN.G993.39' => 'can', 'CANSAT01G2052' => 'cansat', 'CANSAT80G0070' => 'cansat', 'CANSAT80G0483' => 'cansat', 'CANSAT80G0625' => 'cansat', 'CARHR019690' => 'chi', 'CARHR080280' => 'chi', 'CARHR152750' => 'chi', 'CARHR152760' => 'chi', 'CARHR152770' => 'chi', 'CARHR200340' => 'chi', 'CARHR232370' => 'chi', 'CARHR244670' => 'chi', 'CARHR244680' => 'chi', 'CARHR257520' => 'chi', 'Carub.0001s1872' => 'cru', 'Carub.0006s1130' => 'cru', 'Carub.0007s0396' => 'cru', 'Carub.0007s0397' => 'cru', 'Carub.0007s1608' => 'cru', 'Carub.0008s1068' => 'cru', 'Carub.0008s1077' => 'cru', 'Ca_16158_v3' => 'car', 'Ca_17571_v3' => 'car', 'Ca_21936_v3' => 'car', 'Ca_22350_v3' => 'car', 'CBR_g22445' => 'cbr', 'CBR_g26290' => 'cbr', 'Cc04_g09610' => 'ccan', 'Cc04_g12280' => 'ccan', 'Cc07_g10230' => 'ccan', 'CDE02G0093' => 'cde', 'CDE02G0701' => 'cde', 'CDE04G1050' => 'cde', 'CDE05G1833' => 'cde', 'CDE05G3058' => 'cde', 'CDE05G3380' => 'cde', 'CDE06G0536' => 'cde', 'Cfa006923' => 'cfa', 'Cfa009402' => 'cfa', 'Cfa018751' => 'cfa', 'Cfa019164' => 'cfa', 'Cfa022935' => 'cfa', 'Ciclev10019081m.g' => 'ccl', 'Ciclev10025076m.g' => 'ccl', 'Ciclev10030712m.g' => 'ccl', 'Ciclev10033760m.g' => 'ccl', 'CiPaw.05G105600' => 'cil', 'CiPaw.08G136700' => 'cil', 'CiPaw.11G003900' => 'cil', 'CiPaw.11G023700' => 'cil', 'CiPaw.12G003700' => 'cil', 'ClCG06G017100' => 'cla', 'ClCG06G018110' => 'cla', 'ClCG07G008800' => 'cla', 'ClCG07G015330' => 'cla', 'COL.COLO4_13698' => 'col', 'COL.COLO4_16659' => 'col', 'COL.COLO4_21986' => 'col', 'COL.COLO4_24049' => 'col', 'COL.COLO4_29061' => 'col', 'COL.COLO4_29075' => 'col', 'COL.COLO4_30094' => 'col', 'Cpa.g.c33689' => 'cpa', 'Cpa.g.sc108.39' => 'cpa', 'Cpa.g.sc108.41' => 'cpa', 'Cpa.g.sc1163.1' => 'cpa', 'Cpa.g.sc4.155' => 'cpa', 'Cpa.g.sc6.194' => 'cpa', 'CsaV3_1G000340' => 'csa', 'CsaV3_1G001400' => 'csa', 'CsaV3_4G002220' => 'csa', 'CsaV3_4G005370' => 'csa', 'CSS0007487' => 'camsi', 'CSS0008066' => 'camsi', 'CSS0009120' => 'camsi', 'CSS0015512' => 'camsi', 'CSS0022409' => 'camsi', 'CSS0025358' => 'camsi', 'CSS0044547' => 'camsi', 'DCAR_013057' => 'dca', 'DCAR_015058' => 'dca', 'DCAR_016027' => 'dca', 'DCAR_017327' => 'dca', 'DCAR_020743' => 'dca', 'DCAR_026157' => 'dca', 'DCAR_032339' => 'dca', 'DCAR_032340' => 'dca', 'Dinv11200' => 'din', 'Dinv11201' => 'din', 'Dinv20631' => 'din', 'Dinv23182' => 'din', 'Dinv33466' => 'din', 'Dinv33583' => 'din', 'Dinv38565' => 'din', 'Duzib068G0200' => 'dzi', 'Duzib147G0132' => 'dzi', 'Duzib147G0635' => 'dzi', 'Duzib205G1670' => 'dzi', 'Duzib251G0606' => 'dzi', 'ECA232G3336' => 'eca', 'ECA232G3763' => 'eca', 'ECA232G4845' => 'eca', 'ECA234G1607' => 'eca', 'ECA246G0932' => 'eca', 'ECA247G0781' => 'eca', 'ECA247G1932' => 'eca', 'ECA247G2079' => 'eca', 'ECA247G3338' => 'eca', 'ECA247G4115' => 'eca', 'EL10Ac3g06552' => 'bvu', 'EL10Ac5g10721' => 'bvu', 'EL10Ac5g10722' => 'bvu', 'EL10Ac5g10723' => 'bvu', 'EL10Ac5g11361' => 'bvu', 'EL10Ac6g13553' => 'bvu', 'EL10As8g23872' => 'bvu', 'Eucgr.B00250' => 'egr', 'Eucgr.B00251' => 'egr', 'Eucgr.B03533' => 'egr', 'Eucgr.I02381' => 'egr', 'Eucgr.K02700' => 'egr', 'FAN02G0174' => 'fan', 'FAN02G3146' => 'fan', 'FAN04G1672' => 'fan', 'FAN04G2273' => 'fan', 'FAN05G2791' => 'fan', 'FAN05G4035' => 'fan', 'FAN07G0834' => 'fan', 'FAN08G1198' => 'fan', 'FAN09G4182' => 'fan', 'FAN12G0496' => 'fan', 'FAN13G1027' => 'fan', 'FAN13G2951' => 'fan', 'FAN14G0705' => 'fan', 'FAN14G0720' => 'fan', 'FAN17G0201' => 'fan', 'FAN17G2665' => 'fan', 'FAN18G1456' => 'fan', 'FAN18G1525' => 'fan', 'FAN18G3500' => 'fan', 'FAN28G2670' => 'fan', 'FvH4_1g12391' => 'fve', 'FvH4_4g23220' => 'fve', 'FvH4_5g08810' => 'fve', 'FvH4_5g28960' => 'fve', 'FvH4_6g42820' => 'fve', 'FvH4_6g51110' => 'fve', 'Glyma.02G051802' => 'gma', 'Glyma.04G185300' => 'gma', 'Glyma.05G202900' => 'gma', 'Glyma.08G010300' => 'gma', 'Glyma.16G131900' => 'gma', 'Glyma.17G087900' => 'gma', 'Gohir.A07G048600' => 'ghi', 'Gohir.A11G179000' => 'ghi', 'Gohir.A12G140900' => 'ghi', 'Gohir.A12G140950' => 'ghi', 'Gohir.A12G191700' => 'ghi', 'Gohir.A13G086300' => 'ghi', 'Gohir.D07G052900' => 'ghi', 'Gohir.D11G186600' => 'ghi', 'Gohir.D12G145575' => 'ghi', 'Gohir.D12G145650' => 'ghi', 'Gohir.D12G145725' => 'ghi', 'Gohir.D12G194050' => 'ghi', 'Gohir.D13G091800' => 'ghi', 'Gorai.001G055900' => 'gra', 'Gorai.007G198400' => 'gra', 'Gorai.008G157000' => 'gra', 'Gorai.008G157100' => 'gra', 'Gorai.008G208700' => 'gra', 'Gorai.010G138700' => 'gra', 'GSVIVG01000977001' => 'vvi', 'GSVIVG01007708001' => 'vvi', 'GSVIVG01008587001' => 'vvi', 'GSVIVG01018849001' => 'vvi', 'GSVIVG01032432001' => 'vvi', 'HanXRQChr02g0034131' => 'han', 'HanXRQChr02g0035981' => 'han', 'HanXRQChr02g0035991' => 'han', 'HanXRQChr05g0155611' => 'han', 'HanXRQChr05g0155621' => 'han', 'HanXRQChr08g0236501' => 'han', 'HanXRQChr09g0261321' => 'han', 'HanXRQChr09g0272081' => 'han', 'HanXRQChr10g0310741' => 'han', 'HanXRQChr11g0325591' => 'han', 'HanXRQChr12g0385691' => 'han', 'HanXRQChr13g0387801' => 'han', 'HanXRQChr15g0463011' => 'han', 'Haze_03826' => 'cav', 'Haze_03827' => 'cav', 'Haze_07183' => 'cav', 'Haze_07537' => 'cav', 'Haze_07539' => 'cav', 'Haze_12461' => 'cav', 'Haze_16115' => 'cav', 'Haze_16808' => 'cav', 'Haze_18531' => 'cav', 'Hma1.2p1_0046F.1_g026700' => 'hma', 'Hma1.2p1_0046F.1_g026710' => 'hma', 'Hma1.2p1_0168F.1_g074340' => 'hma', 'Hma1.2p1_0266F.1_g107030' => 'hma', 'Hma1.2p1_0266F.1_g107060' => 'hma', 'Hma1.2p1_0275F.1_g110510' => 'hma', 'Hma1.2p1_0592F.1_g185490' => 'hma', 'Hma1.2p1_0592F.1_g185500' => 'hma', 'Hma1.2p1_0592F.1_g185510' => 'hma', 'Hma1.2p1_0592F.1_g185520' => 'hma', 'Hma1.2p1_0592F.1_g185530' => 'hma', 'Hma1.2p1_0818F.1_g223450' => 'hma', 'HPP92_009708' => 'vpl', 'HPP92_009793' => 'vpl', 'HPP92_009796' => 'vpl', 'HPP92_009797' => 'vpl', 'HPP92_014940' => 'vpl', 'HPP92_014988' => 'vpl', 'Hund02463' => 'sun', 'Hund02760' => 'sun', 'Hund05071' => 'sun', 'Hund10108' => 'sun', 'Hund11204' => 'sun', 'Hund14016' => 'sun', 'Hund16464' => 'sun', 'Lalb_Chr09g0333391' => 'lal', 'Lalb_Chr11g0070461' => 'lal', 'Lalb_Chr12g0201671' => 'lal', 'Lalb_Chr13g0297161' => 'lal', 'Lj1g0002823' => 'lja', 'Lj3C1074T6' => 'lonja', 'Lj4A212T28' => 'lonja', 'Lj4g0005516' => 'lja', 'Lj4g0013705' => 'lja', 'Lj4g0027865' => 'lja', 'Lj5C92G16' => 'lonja', 'Lj5C92T12' => 'lonja', 'Lj7C596T3' => 'lonja', 'Lj9A446G59' => 'lonja', 'Lj9A482G21' => 'lonja', 'Lsat_1_v5_gn_1_28261' => 'lsa', 'Lsat_1_v5_gn_1_28281' => 'lsa', 'Lsat_1_v5_gn_1_32721' => 'lsa', 'Lsat_1_v5_gn_4_151760' => 'lsa', 'Lsat_1_v5_gn_4_2120' => 'lsa', 'Lsat_1_v5_gn_4_75761' => 'lsa', 'Lsat_1_v5_gn_5_10920' => 'lsa', 'Manes.02G099900' => 'mes', 'Manes.11G096200' => 'mes', 'Manes.12G007200' => 'mes', 'Manes.14G048300' => 'mes', 'Manes.17G114700' => 'mes', 'Mapoly0002s0070' => 'mpo', 'Mapoly0029s0099' => 'mpo', 'MBI07_g24742_MAGBIO' => 'mbi', 'MBI10_g27988_MAGBIO' => 'mbi', 'MBI11_g13057_MAGBIO' => 'mbi', 'MD02G1137200' => 'mdo', 'MD06G1137200' => 'mdo', 'MD07G1122300' => 'mdo', 'MD09G1078200' => 'mdo', 'MD13G1123700' => 'mdo', 'MD14G1151900' => 'mdo', 'MD17G1030900' => 'mdo', 'MD17G1068200' => 'mdo', 'MD17G1068600' => 'mdo', 'Medtr3g077540' => 'mtr', 'Medtr4g105530' => 'mtr', 'Medtr8g076580' => 'mtr', 'Medtr8g076590' => 'mtr', 'Medtr8g096410' => 'mtr', 'MELO3C016411.2' => 'cme', 'MELO3C017780.2' => 'cme', 'MELO3C022560.2' => 'cme', 'MELO3C026187.2' => 'cme', 'MELO3C026286.2' => 'cme', 'MELO3C032854.2' => 'cme', 'Migut.H02495' => 'egut', 'Migut.I00561' => 'egut', 'Migut.K01015' => 'egut', 'Migut.K01016' => 'egut', 'Migut.L00743' => 'egut', 'Migut.L00744' => 'egut', 'Migut.L00746' => 'egut', 'Migut.L00798' => 'egut', 'Migut.L00799' => 'egut', 'Migut.N02096' => 'egut', 'MSTRG.11259' => 'ama', 'MSTRG.23142' => 'ama', 'MSTRG.2499' => 'ama', 'Nitab4.5_0000003g0730' => 'nta', 'Nitab4.5_0000137g0020' => 'nta', 'Nitab4.5_0000721g0210' => 'nta', 'Nitab4.5_0000723g0050' => 'nta', 'Nitab4.5_0000913g0070' => 'nta', 'Nitab4.5_0001332g0040' => 'nta', 'Nitab4.5_0001771g0050' => 'nta', 'Nitab4.5_0001918g0050' => 'nta', 'Nitab4.5_0002686g0030' => 'nta', 'Nitab4.5_0003156g0020' => 'nta', 'Nitab4.5_0003383g0040' => 'nta', 'Nitab4.5_0003918g0010' => 'nta', 'Nitab4.5_0006760g0010' => 'nta', 'Nn1g05981' => 'nnu', 'Nn1g06288' => 'nnu', 'Nn3g16371' => 'nnu', 'Nn3g16786' => 'nnu', 'Nn4g22232' => 'nnu', 'Oeu005144.1' => 'oeu', 'Oeu005145.1' => 'oeu', 'Oeu011348.1' => 'oeu', 'Oeu016415.1' => 'oeu', 'Oeu023501.1' => 'oeu', 'Oeu044473.1' => 'oeu', 'Oeu048892.2' => 'oeu', 'Os01g0549200' => 'osa', 'Os02g0469300' => 'osa', 'Os04g0311100' => 'osa', 'Os06g0474900' => 'osa', 'Os10g0181700' => 'osa', 'Os11g0454800' => 'osa', 'Peaxi162Scf00037g00714' => 'pax', 'Peaxi162Scf00084g01217' => 'pax', 'Peaxi162Scf00257g00217' => 'pax', 'Peaxi162Scf00516g00215' => 'pax', 'Peaxi162Scf00689g00123' => 'pax', 'PGR044G2719' => 'pgr', 'PGR083G1360' => 'pgr', 'PGR102G2849' => 'pgr', 'PGR119G2534' => 'pgr', 'PGSC0003DMG400003538' => 'stu', 'PGSC0003DMG400028138' => 'stu', 'PGSC0003DMG400031732' => 'stu', 'PGSC0003DMG400038165' => 'stu', 'Phvul.002G284600' => 'pvu', 'Phvul.003G258200' => 'pvu', 'Phvul.009G176500' => 'pvu', 'Potri.003G167201' => 'ptr', 'Potri.005G118400' => 'ptr', 'Potri.012G089000' => 'ptr', 'Potri.012G102800' => 'ptr', 'Potri.015G079400' => 'ptr', 'Potri.015G100900' => 'ptr', 'Pp3c14_9810' => 'ppa', 'Pp3c15_10450' => 'ppa', 'Pp3c20_19150' => 'ppa', 'Pp3c23_12740' => 'ppa', 'Pp3c23_6310' => 'ppa', 'Pp3c24_3720' => 'ppa', 'Pp3c27_2580' => 'ppa', 'Pp3c9_8990' => 'ppa', 'PRCOL_00002854' => 'pco', 'Prupe.1G221200' => 'ppe', 'Prupe.3G289000' => 'ppe', 'Prupe.5G147000' => 'ppe', 'Prupe.6G157300' => 'ppe', 'Prupe.7G163400' => 'ppe', 'Psat0s2177g0040' => 'psa', 'Psat3g174760' => 'psa', 'Psat3g192160' => 'psa', 'Psat4g058520' => 'psa', 'Psat4g096840' => 'psa', 'Psat7g037320' => 'psa', 'PSO017G1274' => 'pso', 'PSO017G5166' => 'pso', 'PSO063G4558' => 'pso', 'PSO170G4458' => 'pso', 'PSO170G5005' => 'pso', 'PSO210G6156' => 'pso', 'PSO210G6635' => 'pso', 'PSO210G7397' => 'pso', 'PSO210G7700' => 'pso', 'PSO455G0035' => 'pso', 'PSO455G0180' => 'pso', 'PSO478G4515' => 'pso', 'PSO832G1305' => 'pso', 'PSO832G3489' => 'pso', 'QL02p075247' => 'qlo', 'QL03p051148' => 'qlo', 'QL05p010313' => 'qlo', 'QL06p034627' => 'qlo', 'QL10p001889' => 'qlo', 'QL10p010846' => 'qlo', 'RcHm_v2.0_Chr1g0350621' => 'rch', 'RcHm_v2.0_Chr1g0350641' => 'rch', 'RcHm_v2.0_Chr2g0092891' => 'rch', 'RcHm_v2.0_Chr2g0100251' => 'rch', 'RcHm_v2.0_Chr2g0158661' => 'rch', 'RcHm_v2.0_Chr2g0172741' => 'rch', 'RcHm_v2.0_Chr4g0429571' => 'rch', 'RcHm_v2.0_Chr5g0042471' => 'rch', 'RcHm_v2.0_Chr7g0189451' => 'rch', 'Rhsim08G0052000' => 'rsi', 'Rhsim08G0174400' => 'rsi', 'Rhsim08G0193200' => 'rsi', 'Rhsim10G0214800' => 'rsi', 'Rhsim10G0214900' => 'rsi', 'Rhsim10G0215000' => 'rsi', 'Rhsim12G0022900' => 'rsi', 'Rhsim12G0177500' => 'rsi', 'Rhsim12G0177700' => 'rsi', 'Sabra03G0122600' => 'sbr', 'Sabra05G0097400' => 'sbr', 'Sabra12G0064100' => 'sbr', 'Sabra15G0121300' => 'sbr', 'SalBow2G0642' => 'sbo', 'SalBow5G2667' => 'sbo', 'SalBow5G4873' => 'sbo', 'SalBow8G2395' => 'sbo', 'Sc03g0003290' => 'sci', 'Sc10g0010130' => 'sci', 'Sc22g0003650' => 'sci', 'Sed0001603' => 'sed', 'Sed0004259' => 'sed', 'Sed0006789' => 'sed', 'Sed0011838' => 'sed', 'Sed0012964' => 'sed', 'Sed0016383' => 'sed', 'Sed0019010' => 'sed', 'Sed0020188' => 'sed', 'SEGI_04702' => 'sgi', 'SEGI_17231' => 'sgi', 'SEGI_18877' => 'sgi', 'SEGI_25196' => 'sgi', 'SEGI_25515' => 'sgi', 'SEGI_28445' => 'sgi', 'SEGI_37452' => 'sgi', 'SGA_v2.0_scaffold188G40336' => 'sas', 'SGA_v2.0_scaffold228G43247' => 'sas', 'SGA_v2.0_scaffold280G46853' => 'sas', 'SGA_v2.0_scaffold34G13808' => 'sas', 'SGA_v2.0_scaffold40G15576' => 'sas', 'SGA_v2.0_scaffold611G53188' => 'sas', 'SGA_v2.0_scaffold78G25461' => 'sas', 'SGA_v2.0_scaffold90G27888' => 'sas', 'SHI08601' => 'shi', 'SHI08606' => 'shi', 'SHI17117' => 'shi', 'SHI17119' => 'shi', 'SMO118G0201' => 'smo', 'SMO169G0247' => 'smo', 'SMO176G0006' => 'smo', 'SMO176G0015' => 'smo', 'SMO202G0006' => 'smo', 'SMO240G0050' => 'smo', 'SMO286G0009' => 'smo', 'SMO338G0033' => 'smo', 'SMO356G0533' => 'smo', 'SMO364G0382' => 'smo', 'SMO367G0166' => 'smo', 'SMO367G1098' => 'smo', 'Solyc01g009920.3' => 'sly', 'Solyc01g099300.3' => 'sly', 'Solyc02g084700.3' => 'sly', 'Solyc03g097520.3' => 'sly', 'Solyc06g071580.3' => 'sly', 'Solyc10g081760.3' => 'sly', 'Sopen01g005480' => 'spe', 'Sopen01g042850' => 'spe', 'Sopen02g029370' => 'spe', 'Sopen03g028280' => 'spe', 'Sopen06g027870' => 'spe', 'Sopen10g032270' => 'spe', 'Sp5g18180' => 'spa', 'Sp6g12880' => 'spa', 'Sp6g30850' => 'spa', 'Sp7g22960' => 'spa', 'Sp7g34010' => 'spa', 'SpUn1326_0010' => 'spa', 'TAR371G0242' => 'tar', 'TAR622G0638' => 'tar', 'TAR628G1548' => 'tar', 'TAR629G1079' => 'tar', 'TAR629G3413' => 'tar', 'THA.LOC104804249' => 'tha', 'THA.LOC104808315' => 'tha', 'THA.LOC104809238' => 'tha', 'THA.LOC104825484' => 'tha', 'Thecc.01G025500' => 'tca', 'Thecc.03G015800' => 'tca', 'Thecc.03G018000' => 'tca', 'Thecc.03G134800' => 'tca', 'Thecc.04G014700' => 'tca', 'Thhalv10006991m.g' => 'esa', 'Thhalv10012707m.g' => 'esa', 'Thhalv10015739m.g' => 'esa', 'Thhalv10024553m.g' => 'esa', 'Thhalv10024673m.g' => 'esa', 'Thhalv10029187m.g' => 'esa', 'TPR.G12971' => 'tpr', 'TPR.G29396' => 'tpr', 'TPR.G33376' => 'tpr', 'TPR.G35508' => 'tpr', 'TPR.G35516' => 'tpr', 'TPR.G37317' => 'tpr', 'TPR.G37389' => 'tpr', 'TPR.G37523' => 'tpr', 'TPR.G559' => 'tpr', 'TWI14G0070' => 'twi', 'TWI14G0729' => 'twi', 'TWI18G0596' => 'twi', 'TWI39G0780' => 'twi', 'TWI39G0850' => 'twi', 'TWI73G1052' => 'twi', 'unitig_52.g17485' => 'ugi', 'unitig_61.g26355' => 'ugi', 'vmacro01040' => 'vma', 'vmacro16731' => 'vma', 'vmacro18270' => 'vma', 'vmacro19142' => 'vma', 'vmacro19407' => 'vma', 'vmacro19408' => 'vma', 'vmacro21899' => 'vma', 'vmacro21900' => 'vma', 'vmacro21901' => 'vma', 'VMungo0251G0490' => 'vmu', 'VMungo0251G1748' => 'vmu', 'VMungo1309G0421' => 'vmu', 'Zm00001eb086500' => 'zma', 'Zm00001eb150680' => 'zma', 'Zm00001eb162330' => 'zma', 'Zm00001eb203130' => 'zma', 'Zm00001eb369480' => 'zma', 'Zm00001eb382340' => 'zma', 'Zm00001eb416360' => 'zma' ), 'gf_id' => 'HOM05D000902', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000902' ), 'data_identifier' => 'HOM05D000902', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000902', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '663', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02470' => 'bna', 'A01p16260' => 'bna', 'A02p01680' => 'bna', 'A03p16600' => 'bna', 'A03p55660' => 'bna', 'A03p64160' => 'bna', 'A03p64170' => 'bna', 'A08p31900' => 'bna', 'A09p59530' => 'bna', 'A10p08230' => 'bna', 'A10p25090' => 'bna', 'Aa31LG3G7100' => 'aar', 'Aa31LG3G7110' => 'aar', 'Aa31LG6G13160' => 'aar', 'Aa31LG7G10770' => 'aar', 'Aa31LG7G3830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2723' => 'aag', 'Actinidia08045' => 'ach', 'Actinidia08888' => 'ach', 'Actinidia18333' => 'ach', 'Actinidia19334' => 'ach', 'Actinidia25552' => 'ach', 'Actinidia26089' => 'ach', 'Actinidia30615' => 'ach', 'Actinidia30616' => 'ach', 'Actinidia33083' => 'ach', 'Actinidia35762' => 'ach', 'Ah.02g110620' => 'amhyb', 'Ah.11g046390' => 'amhyb', 'AL1G31670' => 'aly', 'AL6G23730' => 'aly', 'AL7G14740' => 'aly', 'AL7G14750' => 'aly', 'AL7G14760' => 'aly', 'AL7G28220' => 'aly', 'AL8G24940' => 'aly', 'Aqoxy3G01665' => 'aox', 'Aqoxy3G02853' => 'aox', 'Aqoxy5G01513' => 'aox', 'Aqoxy5G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8SKA4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ75LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKDA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0LJZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7REX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZP4YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWX7I5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2QKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS0L9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPCD8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q161UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC7XCF' => 'arhy', 'AT1G19100' => 'ath', 'AT4G24970' => 'ath', 'AT4G36270' => 'ath', 'AT4G36280' => 'ath', 'AT4G36290' => 'ath', 'AT5G13130' => 'ath', 'AT5G50780' => 'ath', 'ATR0582G266' => 'atr', 'ATR0661G195' => 'atr', 'ATR1152G031' => 'atr', 'Atru.chr11.2382' => 'acertr', 'Atru.chr12.2337' => 'acertr', 'Atru.chr3.744' => 'acertr', 'Atru.chr6.1870' => 'acertr', 'Atru.chr9.2515' => 'acertr', 'AUR62004120' => 'cqu', 'AUR62005667' => 'cqu', 'AUR62007634' => 'cqu', 'AUR62008186' => 'cqu', 'AUR62008187' => 'cqu', 'AUR62008188' => 'cqu', 'AUR62027954' => 'cqu', 'AUR62028766' => 'cqu', 'AUR62028767' => 'cqu', 'AUR62028768' => 'cqu', 'AUR62028886' => 'cqu', 'AUR62029563' => 'cqu', 'AUR62038832' => 'cqu', 'BcaB01g04149' => 'bca', 'BcaB03g12940' => 'bca', 'BcaB03g13090' => 'bca', 'BcaB03g14466' => 'bca', 'BcaB05g24035' => 'bca', 'BcaC01g06050' => 'bca', 'BcaC04g19148' => 'bca', 'BcaC04g20761' => 'bca', 'BcaC06g32845' => 'bca', 'BcaC07g41274' => 'bca', 'BcaC09g50827' => 'bca', 'BcaNung00741' => 'bca', 'BcaNung00742' => 'bca', 'BcaNung01859' => 'bca', 'BcaNung03985' => 'bca', 'BcaNung03989' => 'bca', 'BcaNung05661' => 'bca', 'BolC1t00257H' => 'bol', 'BolC1t01956H' => 'bol', 'BolC2t06534H' => 'bol', 'BolC3t14334H' => 'bol', 'BolC5t30451H' => 'bol', 'BolC7t45880H' => 'bol', 'BolC7t46586H' => 'bol', 'BolC8t49301H' => 'bol', 'BolC8t51837H' => 'bol', 'BolC9t56822H' => 'bol', 'BolC9t59235H' => 'bol', 'BraA01t00234Z' => 'bra', 'BraA01t01563Z' => 'bra', 'BraA02t05147Z' => 'bra', 'BraA03t10947Z' => 'bra', 'BraA03t14633Z' => 'bra', 'BraA08t35112Z' => 'bra', 'BraA09t41330Z' => 'bra', 'BraA10t44570Z' => 'bra', 'C01p02670' => 'bna', 'C01p20260' => 'bna', 'C02p05890' => 'bna', 'C03p19530' => 'bna', 'C05p17470' => 'bna', 'C07p53900' => 'bna', 'C07p61630' => 'bna', 'C08p16800' => 'bna', 'C08p42810' => 'bna', 'C09p39480' => 'bna', 'C09p63980' => 'bna', 'CAN.G1001.7' => 'can', 'CAN.G1034.55' => 'can', 'CAN.G143.7' => 'can', 'CAN.G3340.1' => 'can', 'CAN.G358.19' => 'can', 'CAN.G373.2' => 'can', 'CAN.G674.16' => 'can', 'CAN.G674.17' => 'can', 'CAN.G674.18' => 'can', 'CAN.G732.2' => 'can', 'CAN.G732.3' => 'can', 'CAN.G993.39' => 'can', 'CANSAT01G2052' => 'cansat', 'CANSAT80G0070' => 'cansat', 'CANSAT80G0483' => 'cansat', 'CANSAT80G0625' => 'cansat', 'CARHR019690' => 'chi', 'CARHR080280' => 'chi', 'CARHR152750' => 'chi', 'CARHR152760' => 'chi', 'CARHR152770' => 'chi', 'CARHR200340' => 'chi', 'CARHR232370' => 'chi', 'CARHR244670' => 'chi', 'CARHR244680' => 'chi', 'CARHR257520' => 'chi', 'Carub.0001s1872' => 'cru', 'Carub.0006s1130' => 'cru', 'Carub.0007s0396' => 'cru', 'Carub.0007s0397' => 'cru', 'Carub.0007s1608' => 'cru', 'Carub.0008s1068' => 'cru', 'Carub.0008s1077' => 'cru', 'Ca_16158_v3' => 'car', 'Ca_17571_v3' => 'car', 'Ca_21936_v3' => 'car', 'Ca_22350_v3' => 'car', 'CBR_g22445' => 'cbr', 'CBR_g26290' => 'cbr', 'Cc04_g09610' => 'ccan', 'Cc04_g12280' => 'ccan', 'Cc07_g10230' => 'ccan', 'CDE02G0093' => 'cde', 'CDE02G0701' => 'cde', 'CDE04G1050' => 'cde', 'CDE05G1833' => 'cde', 'CDE05G3058' => 'cde', 'CDE05G3380' => 'cde', 'CDE06G0536' => 'cde', 'Cfa006923' => 'cfa', 'Cfa009402' => 'cfa', 'Cfa018751' => 'cfa', 'Cfa019164' => 'cfa', 'Cfa022935' => 'cfa', 'Ciclev10019081m.g' => 'ccl', 'Ciclev10025076m.g' => 'ccl', 'Ciclev10030712m.g' => 'ccl', 'Ciclev10033760m.g' => 'ccl', 'CiPaw.05G105600' => 'cil', 'CiPaw.08G136700' => 'cil', 'CiPaw.11G003900' => 'cil', 'CiPaw.11G023700' => 'cil', 'CiPaw.12G003700' => 'cil', 'ClCG06G017100' => 'cla', 'ClCG06G018110' => 'cla', 'ClCG07G008800' => 'cla', 'ClCG07G015330' => 'cla', 'COL.COLO4_13698' => 'col', 'COL.COLO4_16659' => 'col', 'COL.COLO4_21986' => 'col', 'COL.COLO4_24049' => 'col', 'COL.COLO4_29061' => 'col', 'COL.COLO4_29075' => 'col', 'COL.COLO4_30094' => 'col', 'Cpa.g.c33689' => 'cpa', 'Cpa.g.sc108.39' => 'cpa', 'Cpa.g.sc108.41' => 'cpa', 'Cpa.g.sc1163.1' => 'cpa', 'Cpa.g.sc4.155' => 'cpa', 'Cpa.g.sc6.194' => 'cpa', 'CsaV3_1G000340' => 'csa', 'CsaV3_1G001400' => 'csa', 'CsaV3_4G002220' => 'csa', 'CsaV3_4G005370' => 'csa', 'CSS0007487' => 'camsi', 'CSS0008066' => 'camsi', 'CSS0009120' => 'camsi', 'CSS0015512' => 'camsi', 'CSS0022409' => 'camsi', 'CSS0025358' => 'camsi', 'CSS0044547' => 'camsi', 'DCAR_013057' => 'dca', 'DCAR_015058' => 'dca', 'DCAR_016027' => 'dca', 'DCAR_017327' => 'dca', 'DCAR_020743' => 'dca', 'DCAR_026157' => 'dca', 'DCAR_032339' => 'dca', 'DCAR_032340' => 'dca', 'Dinv11200' => 'din', 'Dinv11201' => 'din', 'Dinv20631' => 'din', 'Dinv23182' => 'din', 'Dinv33466' => 'din', 'Dinv33583' => 'din', 'Dinv38565' => 'din', 'Duzib068G0200' => 'dzi', 'Duzib147G0132' => 'dzi', 'Duzib147G0635' => 'dzi', 'Duzib205G1670' => 'dzi', 'Duzib251G0606' => 'dzi', 'ECA232G3336' => 'eca', 'ECA232G3763' => 'eca', 'ECA232G4845' => 'eca', 'ECA234G1607' => 'eca', 'ECA246G0932' => 'eca', 'ECA247G0781' => 'eca', 'ECA247G1932' => 'eca', 'ECA247G2079' => 'eca', 'ECA247G3338' => 'eca', 'ECA247G4115' => 'eca', 'EL10Ac3g06552' => 'bvu', 'EL10Ac5g10721' => 'bvu', 'EL10Ac5g10722' => 'bvu', 'EL10Ac5g10723' => 'bvu', 'EL10Ac5g11361' => 'bvu', 'EL10Ac6g13553' => 'bvu', 'EL10As8g23872' => 'bvu', 'Eucgr.B00250' => 'egr', 'Eucgr.B00251' => 'egr', 'Eucgr.B03533' => 'egr', 'Eucgr.I02381' => 'egr', 'Eucgr.K02700' => 'egr', 'FAN02G0174' => 'fan', 'FAN02G3146' => 'fan', 'FAN04G1672' => 'fan', 'FAN04G2273' => 'fan', 'FAN05G2791' => 'fan', 'FAN05G4035' => 'fan', 'FAN07G0834' => 'fan', 'FAN08G1198' => 'fan', 'FAN09G4182' => 'fan', 'FAN12G0496' => 'fan', 'FAN13G1027' => 'fan', 'FAN13G2951' => 'fan', 'FAN14G0705' => 'fan', 'FAN14G0720' => 'fan', 'FAN17G0201' => 'fan', 'FAN17G2665' => 'fan', 'FAN18G1456' => 'fan', 'FAN18G1525' => 'fan', 'FAN18G3500' => 'fan', 'FAN28G2670' => 'fan', 'FvH4_1g12391' => 'fve', 'FvH4_4g23220' => 'fve', 'FvH4_5g08810' => 'fve', 'FvH4_5g28960' => 'fve', 'FvH4_6g42820' => 'fve', 'FvH4_6g51110' => 'fve', 'Glyma.02G051802' => 'gma', 'Glyma.04G185300' => 'gma', 'Glyma.05G202900' => 'gma', 'Glyma.08G010300' => 'gma', 'Glyma.16G131900' => 'gma', 'Glyma.17G087900' => 'gma', 'Gohir.A07G048600' => 'ghi', 'Gohir.A11G179000' => 'ghi', 'Gohir.A12G140900' => 'ghi', 'Gohir.A12G140950' => 'ghi', 'Gohir.A12G191700' => 'ghi', 'Gohir.A13G086300' => 'ghi', 'Gohir.D07G052900' => 'ghi', 'Gohir.D11G186600' => 'ghi', 'Gohir.D12G145575' => 'ghi', 'Gohir.D12G145650' => 'ghi', 'Gohir.D12G145725' => 'ghi', 'Gohir.D12G194050' => 'ghi', 'Gohir.D13G091800' => 'ghi', 'Gorai.001G055900' => 'gra', 'Gorai.007G198400' => 'gra', 'Gorai.008G157000' => 'gra', 'Gorai.008G157100' => 'gra', 'Gorai.008G208700' => 'gra', 'Gorai.010G138700' => 'gra', 'GSVIVG01000977001' => 'vvi', 'GSVIVG01007708001' => 'vvi', 'GSVIVG01008587001' => 'vvi', 'GSVIVG01018849001' => 'vvi', 'GSVIVG01032432001' => 'vvi', 'HanXRQChr02g0034131' => 'han', 'HanXRQChr02g0035981' => 'han', 'HanXRQChr02g0035991' => 'han', 'HanXRQChr05g0155611' => 'han', 'HanXRQChr05g0155621' => 'han', 'HanXRQChr08g0236501' => 'han', 'HanXRQChr09g0261321' => 'han', 'HanXRQChr09g0272081' => 'han', 'HanXRQChr10g0310741' => 'han', 'HanXRQChr11g0325591' => 'han', 'HanXRQChr12g0385691' => 'han', 'HanXRQChr13g0387801' => 'han', 'HanXRQChr15g0463011' => 'han', 'Haze_03826' => 'cav', 'Haze_03827' => 'cav', 'Haze_07183' => 'cav', 'Haze_07537' => 'cav', 'Haze_07539' => 'cav', 'Haze_12461' => 'cav', 'Haze_16115' => 'cav', 'Haze_16808' => 'cav', 'Haze_18531' => 'cav', 'Hma1.2p1_0046F.1_g026700' => 'hma', 'Hma1.2p1_0046F.1_g026710' => 'hma', 'Hma1.2p1_0168F.1_g074340' => 'hma', 'Hma1.2p1_0266F.1_g107030' => 'hma', 'Hma1.2p1_0266F.1_g107060' => 'hma', 'Hma1.2p1_0275F.1_g110510' => 'hma', 'Hma1.2p1_0592F.1_g185490' => 'hma', 'Hma1.2p1_0592F.1_g185500' => 'hma', 'Hma1.2p1_0592F.1_g185510' => 'hma', 'Hma1.2p1_0592F.1_g185520' => 'hma', 'Hma1.2p1_0592F.1_g185530' => 'hma', 'Hma1.2p1_0818F.1_g223450' => 'hma', 'HPP92_009708' => 'vpl', 'HPP92_009793' => 'vpl', 'HPP92_009796' => 'vpl', 'HPP92_009797' => 'vpl', 'HPP92_014940' => 'vpl', 'HPP92_014988' => 'vpl', 'Hund02463' => 'sun', 'Hund02760' => 'sun', 'Hund05071' => 'sun', 'Hund10108' => 'sun', 'Hund11204' => 'sun', 'Hund14016' => 'sun', 'Hund16464' => 'sun', 'Lalb_Chr09g0333391' => 'lal', 'Lalb_Chr11g0070461' => 'lal', 'Lalb_Chr12g0201671' => 'lal', 'Lalb_Chr13g0297161' => 'lal', 'Lj1g0002823' => 'lja', 'Lj3C1074T6' => 'lonja', 'Lj4A212T28' => 'lonja', 'Lj4g0005516' => 'lja', 'Lj4g0013705' => 'lja', 'Lj4g0027865' => 'lja', 'Lj5C92G16' => 'lonja', 'Lj5C92T12' => 'lonja', 'Lj7C596T3' => 'lonja', 'Lj9A446G59' => 'lonja', 'Lj9A482G21' => 'lonja', 'Lsat_1_v5_gn_1_28261' => 'lsa', 'Lsat_1_v5_gn_1_28281' => 'lsa', 'Lsat_1_v5_gn_1_32721' => 'lsa', 'Lsat_1_v5_gn_4_151760' => 'lsa', 'Lsat_1_v5_gn_4_2120' => 'lsa', 'Lsat_1_v5_gn_4_75761' => 'lsa', 'Lsat_1_v5_gn_5_10920' => 'lsa', 'Manes.02G099900' => 'mes', 'Manes.11G096200' => 'mes', 'Manes.12G007200' => 'mes', 'Manes.14G048300' => 'mes', 'Manes.17G114700' => 'mes', 'Mapoly0002s0070' => 'mpo', 'Mapoly0029s0099' => 'mpo', 'MBI07_g24742_MAGBIO' => 'mbi', 'MBI10_g27988_MAGBIO' => 'mbi', 'MBI11_g13057_MAGBIO' => 'mbi', 'MD02G1137200' => 'mdo', 'MD06G1137200' => 'mdo', 'MD07G1122300' => 'mdo', 'MD09G1078200' => 'mdo', 'MD13G1123700' => 'mdo', 'MD14G1151900' => 'mdo', 'MD17G1030900' => 'mdo', 'MD17G1068200' => 'mdo', 'MD17G1068600' => 'mdo', 'Medtr3g077540' => 'mtr', 'Medtr4g105530' => 'mtr', 'Medtr8g076580' => 'mtr', 'Medtr8g076590' => 'mtr', 'Medtr8g096410' => 'mtr', 'MELO3C016411.2' => 'cme', 'MELO3C017780.2' => 'cme', 'MELO3C022560.2' => 'cme', 'MELO3C026187.2' => 'cme', 'MELO3C026286.2' => 'cme', 'MELO3C032854.2' => 'cme', 'Migut.H02495' => 'egut', 'Migut.I00561' => 'egut', 'Migut.K01015' => 'egut', 'Migut.K01016' => 'egut', 'Migut.L00743' => 'egut', 'Migut.L00744' => 'egut', 'Migut.L00746' => 'egut', 'Migut.L00798' => 'egut', 'Migut.L00799' => 'egut', 'Migut.N02096' => 'egut', 'MSTRG.11259' => 'ama', 'MSTRG.23142' => 'ama', 'MSTRG.2499' => 'ama', 'Nitab4.5_0000003g0730' => 'nta', 'Nitab4.5_0000137g0020' => 'nta', 'Nitab4.5_0000721g0210' => 'nta', 'Nitab4.5_0000723g0050' => 'nta', 'Nitab4.5_0000913g0070' => 'nta', 'Nitab4.5_0001332g0040' => 'nta', 'Nitab4.5_0001771g0050' => 'nta', 'Nitab4.5_0001918g0050' => 'nta', 'Nitab4.5_0002686g0030' => 'nta', 'Nitab4.5_0003156g0020' => 'nta', 'Nitab4.5_0003383g0040' => 'nta', 'Nitab4.5_0003918g0010' => 'nta', 'Nitab4.5_0006760g0010' => 'nta', 'Nn1g05981' => 'nnu', 'Nn1g06288' => 'nnu', 'Nn3g16371' => 'nnu', 'Nn3g16786' => 'nnu', 'Nn4g22232' => 'nnu', 'Oeu005144.1' => 'oeu', 'Oeu005145.1' => 'oeu', 'Oeu011348.1' => 'oeu', 'Oeu016415.1' => 'oeu', 'Oeu023501.1' => 'oeu', 'Oeu044473.1' => 'oeu', 'Oeu048892.2' => 'oeu', 'Os01g0549200' => 'osa', 'Os02g0469300' => 'osa', 'Os04g0311100' => 'osa', 'Os06g0474900' => 'osa', 'Os10g0181700' => 'osa', 'Os11g0454800' => 'osa', 'Peaxi162Scf00037g00714' => 'pax', 'Peaxi162Scf00084g01217' => 'pax', 'Peaxi162Scf00257g00217' => 'pax', 'Peaxi162Scf00516g00215' => 'pax', 'Peaxi162Scf00689g00123' => 'pax', 'PGR044G2719' => 'pgr', 'PGR083G1360' => 'pgr', 'PGR102G2849' => 'pgr', 'PGR119G2534' => 'pgr', 'PGSC0003DMG400003538' => 'stu', 'PGSC0003DMG400028138' => 'stu', 'PGSC0003DMG400031732' => 'stu', 'PGSC0003DMG400038165' => 'stu', 'Phvul.002G284600' => 'pvu', 'Phvul.003G258200' => 'pvu', 'Phvul.009G176500' => 'pvu', 'Potri.003G167201' => 'ptr', 'Potri.005G118400' => 'ptr', 'Potri.012G089000' => 'ptr', 'Potri.012G102800' => 'ptr', 'Potri.015G079400' => 'ptr', 'Potri.015G100900' => 'ptr', 'Pp3c14_9810' => 'ppa', 'Pp3c15_10450' => 'ppa', 'Pp3c20_19150' => 'ppa', 'Pp3c23_12740' => 'ppa', 'Pp3c23_6310' => 'ppa', 'Pp3c24_3720' => 'ppa', 'Pp3c27_2580' => 'ppa', 'Pp3c9_8990' => 'ppa', 'PRCOL_00002854' => 'pco', 'Prupe.1G221200' => 'ppe', 'Prupe.3G289000' => 'ppe', 'Prupe.5G147000' => 'ppe', 'Prupe.6G157300' => 'ppe', 'Prupe.7G163400' => 'ppe', 'Psat0s2177g0040' => 'psa', 'Psat3g174760' => 'psa', 'Psat3g192160' => 'psa', 'Psat4g058520' => 'psa', 'Psat4g096840' => 'psa', 'Psat7g037320' => 'psa', 'PSO017G1274' => 'pso', 'PSO017G5166' => 'pso', 'PSO063G4558' => 'pso', 'PSO170G4458' => 'pso', 'PSO170G5005' => 'pso', 'PSO210G6156' => 'pso', 'PSO210G6635' => 'pso', 'PSO210G7397' => 'pso', 'PSO210G7700' => 'pso', 'PSO455G0035' => 'pso', 'PSO455G0180' => 'pso', 'PSO478G4515' => 'pso', 'PSO832G1305' => 'pso', 'PSO832G3489' => 'pso', 'QL02p075247' => 'qlo', 'QL03p051148' => 'qlo', 'QL05p010313' => 'qlo', 'QL06p034627' => 'qlo', 'QL10p001889' => 'qlo', 'QL10p010846' => 'qlo', 'RcHm_v2.0_Chr1g0350621' => 'rch', 'RcHm_v2.0_Chr1g0350641' => 'rch', 'RcHm_v2.0_Chr2g0092891' => 'rch', 'RcHm_v2.0_Chr2g0100251' => 'rch', 'RcHm_v2.0_Chr2g0158661' => 'rch', 'RcHm_v2.0_Chr2g0172741' => 'rch', 'RcHm_v2.0_Chr4g0429571' => 'rch', 'RcHm_v2.0_Chr5g0042471' => 'rch', 'RcHm_v2.0_Chr7g0189451' => 'rch', 'Rhsim08G0052000' => 'rsi', 'Rhsim08G0174400' => 'rsi', 'Rhsim08G0193200' => 'rsi', 'Rhsim10G0214800' => 'rsi', 'Rhsim10G0214900' => 'rsi', 'Rhsim10G0215000' => 'rsi', 'Rhsim12G0022900' => 'rsi', 'Rhsim12G0177500' => 'rsi', 'Rhsim12G0177700' => 'rsi', 'Sabra03G0122600' => 'sbr', 'Sabra05G0097400' => 'sbr', 'Sabra12G0064100' => 'sbr', 'Sabra15G0121300' => 'sbr', 'SalBow2G0642' => 'sbo', 'SalBow5G2667' => 'sbo', 'SalBow5G4873' => 'sbo', 'SalBow8G2395' => 'sbo', 'Sc03g0003290' => 'sci', 'Sc10g0010130' => 'sci', 'Sc22g0003650' => 'sci', 'Sed0001603' => 'sed', 'Sed0004259' => 'sed', 'Sed0006789' => 'sed', 'Sed0011838' => 'sed', 'Sed0012964' => 'sed', 'Sed0016383' => 'sed', 'Sed0019010' => 'sed', 'Sed0020188' => 'sed', 'SEGI_04702' => 'sgi', 'SEGI_17231' => 'sgi', 'SEGI_18877' => 'sgi', 'SEGI_25196' => 'sgi', 'SEGI_25515' => 'sgi', 'SEGI_28445' => 'sgi', 'SEGI_37452' => 'sgi', 'SGA_v2.0_scaffold188G40336' => 'sas', 'SGA_v2.0_scaffold228G43247' => 'sas', 'SGA_v2.0_scaffold280G46853' => 'sas', 'SGA_v2.0_scaffold34G13808' => 'sas', 'SGA_v2.0_scaffold40G15576' => 'sas', 'SGA_v2.0_scaffold611G53188' => 'sas', 'SGA_v2.0_scaffold78G25461' => 'sas', 'SGA_v2.0_scaffold90G27888' => 'sas', 'SHI08601' => 'shi', 'SHI08606' => 'shi', 'SHI17117' => 'shi', 'SHI17119' => 'shi', 'SMO118G0201' => 'smo', 'SMO169G0247' => 'smo', 'SMO176G0006' => 'smo', 'SMO176G0015' => 'smo', 'SMO202G0006' => 'smo', 'SMO240G0050' => 'smo', 'SMO286G0009' => 'smo', 'SMO338G0033' => 'smo', 'SMO356G0533' => 'smo', 'SMO364G0382' => 'smo', 'SMO367G0166' => 'smo', 'SMO367G1098' => 'smo', 'Solyc01g009920.3' => 'sly', 'Solyc01g099300.3' => 'sly', 'Solyc02g084700.3' => 'sly', 'Solyc03g097520.3' => 'sly', 'Solyc06g071580.3' => 'sly', 'Solyc10g081760.3' => 'sly', 'Sopen01g005480' => 'spe', 'Sopen01g042850' => 'spe', 'Sopen02g029370' => 'spe', 'Sopen03g028280' => 'spe', 'Sopen06g027870' => 'spe', 'Sopen10g032270' => 'spe', 'Sp5g18180' => 'spa', 'Sp6g12880' => 'spa', 'Sp6g30850' => 'spa', 'Sp7g22960' => 'spa', 'Sp7g34010' => 'spa', 'SpUn1326_0010' => 'spa', 'TAR371G0242' => 'tar', 'TAR622G0638' => 'tar', 'TAR628G1548' => 'tar', 'TAR629G1079' => 'tar', 'TAR629G3413' => 'tar', 'THA.LOC104804249' => 'tha', 'THA.LOC104808315' => 'tha', 'THA.LOC104809238' => 'tha', 'THA.LOC104825484' => 'tha', 'Thecc.01G025500' => 'tca', 'Thecc.03G015800' => 'tca', 'Thecc.03G018000' => 'tca', 'Thecc.03G134800' => 'tca', 'Thecc.04G014700' => 'tca', 'Thhalv10006991m.g' => 'esa', 'Thhalv10012707m.g' => 'esa', 'Thhalv10015739m.g' => 'esa', 'Thhalv10024553m.g' => 'esa', 'Thhalv10024673m.g' => 'esa', 'Thhalv10029187m.g' => 'esa', 'TPR.G12971' => 'tpr', 'TPR.G29396' => 'tpr', 'TPR.G33376' => 'tpr', 'TPR.G35508' => 'tpr', 'TPR.G35516' => 'tpr', 'TPR.G37317' => 'tpr', 'TPR.G37389' => 'tpr', 'TPR.G37523' => 'tpr', 'TPR.G559' => 'tpr', 'TWI14G0070' => 'twi', 'TWI14G0729' => 'twi', 'TWI18G0596' => 'twi', 'TWI39G0780' => 'twi', 'TWI39G0850' => 'twi', 'TWI73G1052' => 'twi', 'unitig_52.g17485' => 'ugi', 'unitig_61.g26355' => 'ugi', 'vmacro01040' => 'vma', 'vmacro16731' => 'vma', 'vmacro18270' => 'vma', 'vmacro19142' => 'vma', 'vmacro19407' => 'vma', 'vmacro19408' => 'vma', 'vmacro21899' => 'vma', 'vmacro21900' => 'vma', 'vmacro21901' => 'vma', 'VMungo0251G0490' => 'vmu', 'VMungo0251G1748' => 'vmu', 'VMungo1309G0421' => 'vmu', 'Zm00001eb086500' => 'zma', 'Zm00001eb150680' => 'zma', 'Zm00001eb162330' => 'zma', 'Zm00001eb203130' => 'zma', 'Zm00001eb369480' => 'zma', 'Zm00001eb382340' => 'zma', 'Zm00001eb416360' => 'zma' ) $gf_id = 'HOM05D000902' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000902' ) $data_identifier = 'HOM05D000902' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 13, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 10, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 6, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 9, 'hma' => (int) 12, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 4, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 6, 'ppa' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 6, 'rch' => (int) 9, 'rsi' => (int) 9, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 12, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 3, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416360' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000902', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '663', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02470' => 'bna', 'A01p16260' => 'bna', 'A02p01680' => 'bna', 'A03p16600' => 'bna', 'A03p55660' => 'bna', 'A03p64160' => 'bna', 'A03p64170' => 'bna', 'A08p31900' => 'bna', 'A09p59530' => 'bna', 'A10p08230' => 'bna', 'A10p25090' => 'bna', 'Aa31LG3G7100' => 'aar', 'Aa31LG3G7110' => 'aar', 'Aa31LG6G13160' => 'aar', 'Aa31LG7G10770' => 'aar', 'Aa31LG7G3830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2723' => 'aag', 'Actinidia08045' => 'ach', 'Actinidia08888' => 'ach', 'Actinidia18333' => 'ach', 'Actinidia19334' => 'ach', 'Actinidia25552' => 'ach', 'Actinidia26089' => 'ach', 'Actinidia30615' => 'ach', 'Actinidia30616' => 'ach', 'Actinidia33083' => 'ach', 'Actinidia35762' => 'ach', 'Ah.02g110620' => 'amhyb', 'Ah.11g046390' => 'amhyb', 'AL1G31670' => 'aly', 'AL6G23730' => 'aly', 'AL7G14740' => 'aly', 'AL7G14750' => 'aly', 'AL7G14760' => 'aly', 'AL7G28220' => 'aly', 'AL8G24940' => 'aly', 'Aqoxy3G01665' => 'aox', 'Aqoxy3G02853' => 'aox', 'Aqoxy5G01513' => 'aox', 'Aqoxy5G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8SKA4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ75LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKDA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0LJZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7REX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZP4YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWX7I5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2QKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS0L9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPCD8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q161UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC7XCF' => 'arhy', 'AT1G19100' => 'ath', 'AT4G24970' => 'ath', 'AT4G36270' => 'ath', 'AT4G36280' => 'ath', 'AT4G36290' => 'ath', 'AT5G13130' => 'ath', 'AT5G50780' => 'ath', 'ATR0582G266' => 'atr', 'ATR0661G195' => 'atr', 'ATR1152G031' => 'atr', 'Atru.chr11.2382' => 'acertr', 'Atru.chr12.2337' => 'acertr', 'Atru.chr3.744' => 'acertr', 'Atru.chr6.1870' => 'acertr', 'Atru.chr9.2515' => 'acertr', 'AUR62004120' => 'cqu', 'AUR62005667' => 'cqu', 'AUR62007634' => 'cqu', 'AUR62008186' => 'cqu', 'AUR62008187' => 'cqu', 'AUR62008188' => 'cqu', 'AUR62027954' => 'cqu', 'AUR62028766' => 'cqu', 'AUR62028767' => 'cqu', 'AUR62028768' => 'cqu', 'AUR62028886' => 'cqu', 'AUR62029563' => 'cqu', 'AUR62038832' => 'cqu', 'BcaB01g04149' => 'bca', 'BcaB03g12940' => 'bca', 'BcaB03g13090' => 'bca', 'BcaB03g14466' => 'bca', 'BcaB05g24035' => 'bca', 'BcaC01g06050' => 'bca', 'BcaC04g19148' => 'bca', 'BcaC04g20761' => 'bca', 'BcaC06g32845' => 'bca', 'BcaC07g41274' => 'bca', 'BcaC09g50827' => 'bca', 'BcaNung00741' => 'bca', 'BcaNung00742' => 'bca', 'BcaNung01859' => 'bca', 'BcaNung03985' => 'bca', 'BcaNung03989' => 'bca', 'BcaNung05661' => 'bca', 'BolC1t00257H' => 'bol', 'BolC1t01956H' => 'bol', 'BolC2t06534H' => 'bol', 'BolC3t14334H' => 'bol', 'BolC5t30451H' => 'bol', 'BolC7t45880H' => 'bol', 'BolC7t46586H' => 'bol', 'BolC8t49301H' => 'bol', 'BolC8t51837H' => 'bol', 'BolC9t56822H' => 'bol', 'BolC9t59235H' => 'bol', 'BraA01t00234Z' => 'bra', 'BraA01t01563Z' => 'bra', 'BraA02t05147Z' => 'bra', 'BraA03t10947Z' => 'bra', 'BraA03t14633Z' => 'bra', 'BraA08t35112Z' => 'bra', 'BraA09t41330Z' => 'bra', 'BraA10t44570Z' => 'bra', 'C01p02670' => 'bna', 'C01p20260' => 'bna', 'C02p05890' => 'bna', 'C03p19530' => 'bna', 'C05p17470' => 'bna', 'C07p53900' => 'bna', 'C07p61630' => 'bna', 'C08p16800' => 'bna', 'C08p42810' => 'bna', 'C09p39480' => 'bna', 'C09p63980' => 'bna', 'CAN.G1001.7' => 'can', 'CAN.G1034.55' => 'can', 'CAN.G143.7' => 'can', 'CAN.G3340.1' => 'can', 'CAN.G358.19' => 'can', 'CAN.G373.2' => 'can', 'CAN.G674.16' => 'can', 'CAN.G674.17' => 'can', 'CAN.G674.18' => 'can', 'CAN.G732.2' => 'can', 'CAN.G732.3' => 'can', 'CAN.G993.39' => 'can', 'CANSAT01G2052' => 'cansat', 'CANSAT80G0070' => 'cansat', 'CANSAT80G0483' => 'cansat', 'CANSAT80G0625' => 'cansat', 'CARHR019690' => 'chi', 'CARHR080280' => 'chi', 'CARHR152750' => 'chi', 'CARHR152760' => 'chi', 'CARHR152770' => 'chi', 'CARHR200340' => 'chi', 'CARHR232370' => 'chi', 'CARHR244670' => 'chi', 'CARHR244680' => 'chi', 'CARHR257520' => 'chi', 'Carub.0001s1872' => 'cru', 'Carub.0006s1130' => 'cru', 'Carub.0007s0396' => 'cru', 'Carub.0007s0397' => 'cru', 'Carub.0007s1608' => 'cru', 'Carub.0008s1068' => 'cru', 'Carub.0008s1077' => 'cru', 'Ca_16158_v3' => 'car', 'Ca_17571_v3' => 'car', 'Ca_21936_v3' => 'car', 'Ca_22350_v3' => 'car', 'CBR_g22445' => 'cbr', 'CBR_g26290' => 'cbr', 'Cc04_g09610' => 'ccan', 'Cc04_g12280' => 'ccan', 'Cc07_g10230' => 'ccan', 'CDE02G0093' => 'cde', 'CDE02G0701' => 'cde', 'CDE04G1050' => 'cde', 'CDE05G1833' => 'cde', 'CDE05G3058' => 'cde', 'CDE05G3380' => 'cde', 'CDE06G0536' => 'cde', 'Cfa006923' => 'cfa', 'Cfa009402' => 'cfa', 'Cfa018751' => 'cfa', 'Cfa019164' => 'cfa', 'Cfa022935' => 'cfa', 'Ciclev10019081m.g' => 'ccl', 'Ciclev10025076m.g' => 'ccl', 'Ciclev10030712m.g' => 'ccl', 'Ciclev10033760m.g' => 'ccl', 'CiPaw.05G105600' => 'cil', 'CiPaw.08G136700' => 'cil', 'CiPaw.11G003900' => 'cil', 'CiPaw.11G023700' => 'cil', 'CiPaw.12G003700' => 'cil', 'ClCG06G017100' => 'cla', 'ClCG06G018110' => 'cla', 'ClCG07G008800' => 'cla', 'ClCG07G015330' => 'cla', 'COL.COLO4_13698' => 'col', 'COL.COLO4_16659' => 'col', 'COL.COLO4_21986' => 'col', 'COL.COLO4_24049' => 'col', 'COL.COLO4_29061' => 'col', 'COL.COLO4_29075' => 'col', 'COL.COLO4_30094' => 'col', 'Cpa.g.c33689' => 'cpa', 'Cpa.g.sc108.39' => 'cpa', 'Cpa.g.sc108.41' => 'cpa', 'Cpa.g.sc1163.1' => 'cpa', 'Cpa.g.sc4.155' => 'cpa', 'Cpa.g.sc6.194' => 'cpa', 'CsaV3_1G000340' => 'csa', 'CsaV3_1G001400' => 'csa', 'CsaV3_4G002220' => 'csa', 'CsaV3_4G005370' => 'csa', 'CSS0007487' => 'camsi', 'CSS0008066' => 'camsi', 'CSS0009120' => 'camsi', 'CSS0015512' => 'camsi', 'CSS0022409' => 'camsi', 'CSS0025358' => 'camsi', 'CSS0044547' => 'camsi', 'DCAR_013057' => 'dca', 'DCAR_015058' => 'dca', 'DCAR_016027' => 'dca', 'DCAR_017327' => 'dca', 'DCAR_020743' => 'dca', 'DCAR_026157' => 'dca', 'DCAR_032339' => 'dca', 'DCAR_032340' => 'dca', 'Dinv11200' => 'din', 'Dinv11201' => 'din', 'Dinv20631' => 'din', 'Dinv23182' => 'din', 'Dinv33466' => 'din', 'Dinv33583' => 'din', 'Dinv38565' => 'din', 'Duzib068G0200' => 'dzi', 'Duzib147G0132' => 'dzi', 'Duzib147G0635' => 'dzi', 'Duzib205G1670' => 'dzi', 'Duzib251G0606' => 'dzi', 'ECA232G3336' => 'eca', 'ECA232G3763' => 'eca', 'ECA232G4845' => 'eca', 'ECA234G1607' => 'eca', 'ECA246G0932' => 'eca', 'ECA247G0781' => 'eca', 'ECA247G1932' => 'eca', 'ECA247G2079' => 'eca', 'ECA247G3338' => 'eca', 'ECA247G4115' => 'eca', 'EL10Ac3g06552' => 'bvu', 'EL10Ac5g10721' => 'bvu', 'EL10Ac5g10722' => 'bvu', 'EL10Ac5g10723' => 'bvu', 'EL10Ac5g11361' => 'bvu', 'EL10Ac6g13553' => 'bvu', 'EL10As8g23872' => 'bvu', 'Eucgr.B00250' => 'egr', 'Eucgr.B00251' => 'egr', 'Eucgr.B03533' => 'egr', 'Eucgr.I02381' => 'egr', 'Eucgr.K02700' => 'egr', 'FAN02G0174' => 'fan', 'FAN02G3146' => 'fan', 'FAN04G1672' => 'fan', 'FAN04G2273' => 'fan', 'FAN05G2791' => 'fan', 'FAN05G4035' => 'fan', 'FAN07G0834' => 'fan', 'FAN08G1198' => 'fan', 'FAN09G4182' => 'fan', 'FAN12G0496' => 'fan', 'FAN13G1027' => 'fan', 'FAN13G2951' => 'fan', 'FAN14G0705' => 'fan', 'FAN14G0720' => 'fan', 'FAN17G0201' => 'fan', 'FAN17G2665' => 'fan', 'FAN18G1456' => 'fan', 'FAN18G1525' => 'fan', 'FAN18G3500' => 'fan', 'FAN28G2670' => 'fan', 'FvH4_1g12391' => 'fve', 'FvH4_4g23220' => 'fve', 'FvH4_5g08810' => 'fve', 'FvH4_5g28960' => 'fve', 'FvH4_6g42820' => 'fve', 'FvH4_6g51110' => 'fve', 'Glyma.02G051802' => 'gma', 'Glyma.04G185300' => 'gma', 'Glyma.05G202900' => 'gma', 'Glyma.08G010300' => 'gma', 'Glyma.16G131900' => 'gma', 'Glyma.17G087900' => 'gma', 'Gohir.A07G048600' => 'ghi', 'Gohir.A11G179000' => 'ghi', 'Gohir.A12G140900' => 'ghi', 'Gohir.A12G140950' => 'ghi', 'Gohir.A12G191700' => 'ghi', 'Gohir.A13G086300' => 'ghi', 'Gohir.D07G052900' => 'ghi', 'Gohir.D11G186600' => 'ghi', 'Gohir.D12G145575' => 'ghi', 'Gohir.D12G145650' => 'ghi', 'Gohir.D12G145725' => 'ghi', 'Gohir.D12G194050' => 'ghi', 'Gohir.D13G091800' => 'ghi', 'Gorai.001G055900' => 'gra', 'Gorai.007G198400' => 'gra', 'Gorai.008G157000' => 'gra', 'Gorai.008G157100' => 'gra', 'Gorai.008G208700' => 'gra', 'Gorai.010G138700' => 'gra', 'GSVIVG01000977001' => 'vvi', 'GSVIVG01007708001' => 'vvi', 'GSVIVG01008587001' => 'vvi', 'GSVIVG01018849001' => 'vvi', 'GSVIVG01032432001' => 'vvi', 'HanXRQChr02g0034131' => 'han', 'HanXRQChr02g0035981' => 'han', 'HanXRQChr02g0035991' => 'han', 'HanXRQChr05g0155611' => 'han', 'HanXRQChr05g0155621' => 'han', 'HanXRQChr08g0236501' => 'han', 'HanXRQChr09g0261321' => 'han', 'HanXRQChr09g0272081' => 'han', 'HanXRQChr10g0310741' => 'han', 'HanXRQChr11g0325591' => 'han', 'HanXRQChr12g0385691' => 'han', 'HanXRQChr13g0387801' => 'han', 'HanXRQChr15g0463011' => 'han', 'Haze_03826' => 'cav', 'Haze_03827' => 'cav', 'Haze_07183' => 'cav', 'Haze_07537' => 'cav', 'Haze_07539' => 'cav', 'Haze_12461' => 'cav', 'Haze_16115' => 'cav', 'Haze_16808' => 'cav', 'Haze_18531' => 'cav', 'Hma1.2p1_0046F.1_g026700' => 'hma', 'Hma1.2p1_0046F.1_g026710' => 'hma', 'Hma1.2p1_0168F.1_g074340' => 'hma', 'Hma1.2p1_0266F.1_g107030' => 'hma', 'Hma1.2p1_0266F.1_g107060' => 'hma', 'Hma1.2p1_0275F.1_g110510' => 'hma', 'Hma1.2p1_0592F.1_g185490' => 'hma', 'Hma1.2p1_0592F.1_g185500' => 'hma', 'Hma1.2p1_0592F.1_g185510' => 'hma', 'Hma1.2p1_0592F.1_g185520' => 'hma', 'Hma1.2p1_0592F.1_g185530' => 'hma', 'Hma1.2p1_0818F.1_g223450' => 'hma', 'HPP92_009708' => 'vpl', 'HPP92_009793' => 'vpl', 'HPP92_009796' => 'vpl', 'HPP92_009797' => 'vpl', 'HPP92_014940' => 'vpl', 'HPP92_014988' => 'vpl', 'Hund02463' => 'sun', 'Hund02760' => 'sun', 'Hund05071' => 'sun', 'Hund10108' => 'sun', 'Hund11204' => 'sun', 'Hund14016' => 'sun', 'Hund16464' => 'sun', 'Lalb_Chr09g0333391' => 'lal', 'Lalb_Chr11g0070461' => 'lal', 'Lalb_Chr12g0201671' => 'lal', 'Lalb_Chr13g0297161' => 'lal', 'Lj1g0002823' => 'lja', 'Lj3C1074T6' => 'lonja', 'Lj4A212T28' => 'lonja', 'Lj4g0005516' => 'lja', 'Lj4g0013705' => 'lja', 'Lj4g0027865' => 'lja', 'Lj5C92G16' => 'lonja', 'Lj5C92T12' => 'lonja', 'Lj7C596T3' => 'lonja', 'Lj9A446G59' => 'lonja', 'Lj9A482G21' => 'lonja', 'Lsat_1_v5_gn_1_28261' => 'lsa', 'Lsat_1_v5_gn_1_28281' => 'lsa', 'Lsat_1_v5_gn_1_32721' => 'lsa', 'Lsat_1_v5_gn_4_151760' => 'lsa', 'Lsat_1_v5_gn_4_2120' => 'lsa', 'Lsat_1_v5_gn_4_75761' => 'lsa', 'Lsat_1_v5_gn_5_10920' => 'lsa', 'Manes.02G099900' => 'mes', 'Manes.11G096200' => 'mes', 'Manes.12G007200' => 'mes', 'Manes.14G048300' => 'mes', 'Manes.17G114700' => 'mes', 'Mapoly0002s0070' => 'mpo', 'Mapoly0029s0099' => 'mpo', 'MBI07_g24742_MAGBIO' => 'mbi', 'MBI10_g27988_MAGBIO' => 'mbi', 'MBI11_g13057_MAGBIO' => 'mbi', 'MD02G1137200' => 'mdo', 'MD06G1137200' => 'mdo', 'MD07G1122300' => 'mdo', 'MD09G1078200' => 'mdo', 'MD13G1123700' => 'mdo', 'MD14G1151900' => 'mdo', 'MD17G1030900' => 'mdo', 'MD17G1068200' => 'mdo', 'MD17G1068600' => 'mdo', 'Medtr3g077540' => 'mtr', 'Medtr4g105530' => 'mtr', 'Medtr8g076580' => 'mtr', 'Medtr8g076590' => 'mtr', 'Medtr8g096410' => 'mtr', 'MELO3C016411.2' => 'cme', 'MELO3C017780.2' => 'cme', 'MELO3C022560.2' => 'cme', 'MELO3C026187.2' => 'cme', 'MELO3C026286.2' => 'cme', 'MELO3C032854.2' => 'cme', 'Migut.H02495' => 'egut', 'Migut.I00561' => 'egut', 'Migut.K01015' => 'egut', 'Migut.K01016' => 'egut', 'Migut.L00743' => 'egut', 'Migut.L00744' => 'egut', 'Migut.L00746' => 'egut', 'Migut.L00798' => 'egut', 'Migut.L00799' => 'egut', 'Migut.N02096' => 'egut', 'MSTRG.11259' => 'ama', 'MSTRG.23142' => 'ama', 'MSTRG.2499' => 'ama', 'Nitab4.5_0000003g0730' => 'nta', 'Nitab4.5_0000137g0020' => 'nta', 'Nitab4.5_0000721g0210' => 'nta', 'Nitab4.5_0000723g0050' => 'nta', 'Nitab4.5_0000913g0070' => 'nta', 'Nitab4.5_0001332g0040' => 'nta', 'Nitab4.5_0001771g0050' => 'nta', 'Nitab4.5_0001918g0050' => 'nta', 'Nitab4.5_0002686g0030' => 'nta', 'Nitab4.5_0003156g0020' => 'nta', 'Nitab4.5_0003383g0040' => 'nta', 'Nitab4.5_0003918g0010' => 'nta', 'Nitab4.5_0006760g0010' => 'nta', 'Nn1g05981' => 'nnu', 'Nn1g06288' => 'nnu', 'Nn3g16371' => 'nnu', 'Nn3g16786' => 'nnu', 'Nn4g22232' => 'nnu', 'Oeu005144.1' => 'oeu', 'Oeu005145.1' => 'oeu', 'Oeu011348.1' => 'oeu', 'Oeu016415.1' => 'oeu', 'Oeu023501.1' => 'oeu', 'Oeu044473.1' => 'oeu', 'Oeu048892.2' => 'oeu', 'Os01g0549200' => 'osa', 'Os02g0469300' => 'osa', 'Os04g0311100' => 'osa', 'Os06g0474900' => 'osa', 'Os10g0181700' => 'osa', 'Os11g0454800' => 'osa', 'Peaxi162Scf00037g00714' => 'pax', 'Peaxi162Scf00084g01217' => 'pax', 'Peaxi162Scf00257g00217' => 'pax', 'Peaxi162Scf00516g00215' => 'pax', 'Peaxi162Scf00689g00123' => 'pax', 'PGR044G2719' => 'pgr', 'PGR083G1360' => 'pgr', 'PGR102G2849' => 'pgr', 'PGR119G2534' => 'pgr', 'PGSC0003DMG400003538' => 'stu', 'PGSC0003DMG400028138' => 'stu', 'PGSC0003DMG400031732' => 'stu', 'PGSC0003DMG400038165' => 'stu', 'Phvul.002G284600' => 'pvu', 'Phvul.003G258200' => 'pvu', 'Phvul.009G176500' => 'pvu', 'Potri.003G167201' => 'ptr', 'Potri.005G118400' => 'ptr', 'Potri.012G089000' => 'ptr', 'Potri.012G102800' => 'ptr', 'Potri.015G079400' => 'ptr', 'Potri.015G100900' => 'ptr', 'Pp3c14_9810' => 'ppa', 'Pp3c15_10450' => 'ppa', 'Pp3c20_19150' => 'ppa', 'Pp3c23_12740' => 'ppa', 'Pp3c23_6310' => 'ppa', 'Pp3c24_3720' => 'ppa', 'Pp3c27_2580' => 'ppa', 'Pp3c9_8990' => 'ppa', 'PRCOL_00002854' => 'pco', 'Prupe.1G221200' => 'ppe', 'Prupe.3G289000' => 'ppe', 'Prupe.5G147000' => 'ppe', 'Prupe.6G157300' => 'ppe', 'Prupe.7G163400' => 'ppe', 'Psat0s2177g0040' => 'psa', 'Psat3g174760' => 'psa', 'Psat3g192160' => 'psa', 'Psat4g058520' => 'psa', 'Psat4g096840' => 'psa', 'Psat7g037320' => 'psa', 'PSO017G1274' => 'pso', 'PSO017G5166' => 'pso', 'PSO063G4558' => 'pso', 'PSO170G4458' => 'pso', 'PSO170G5005' => 'pso', 'PSO210G6156' => 'pso', 'PSO210G6635' => 'pso', 'PSO210G7397' => 'pso', 'PSO210G7700' => 'pso', 'PSO455G0035' => 'pso', 'PSO455G0180' => 'pso', 'PSO478G4515' => 'pso', 'PSO832G1305' => 'pso', 'PSO832G3489' => 'pso', 'QL02p075247' => 'qlo', 'QL03p051148' => 'qlo', 'QL05p010313' => 'qlo', 'QL06p034627' => 'qlo', 'QL10p001889' => 'qlo', 'QL10p010846' => 'qlo', 'RcHm_v2.0_Chr1g0350621' => 'rch', 'RcHm_v2.0_Chr1g0350641' => 'rch', 'RcHm_v2.0_Chr2g0092891' => 'rch', 'RcHm_v2.0_Chr2g0100251' => 'rch', 'RcHm_v2.0_Chr2g0158661' => 'rch', 'RcHm_v2.0_Chr2g0172741' => 'rch', 'RcHm_v2.0_Chr4g0429571' => 'rch', 'RcHm_v2.0_Chr5g0042471' => 'rch', 'RcHm_v2.0_Chr7g0189451' => 'rch', 'Rhsim08G0052000' => 'rsi', 'Rhsim08G0174400' => 'rsi', 'Rhsim08G0193200' => 'rsi', 'Rhsim10G0214800' => 'rsi', 'Rhsim10G0214900' => 'rsi', 'Rhsim10G0215000' => 'rsi', 'Rhsim12G0022900' => 'rsi', 'Rhsim12G0177500' => 'rsi', 'Rhsim12G0177700' => 'rsi', 'Sabra03G0122600' => 'sbr', 'Sabra05G0097400' => 'sbr', 'Sabra12G0064100' => 'sbr', 'Sabra15G0121300' => 'sbr', 'SalBow2G0642' => 'sbo', 'SalBow5G2667' => 'sbo', 'SalBow5G4873' => 'sbo', 'SalBow8G2395' => 'sbo', 'Sc03g0003290' => 'sci', 'Sc10g0010130' => 'sci', 'Sc22g0003650' => 'sci', 'Sed0001603' => 'sed', 'Sed0004259' => 'sed', 'Sed0006789' => 'sed', 'Sed0011838' => 'sed', 'Sed0012964' => 'sed', 'Sed0016383' => 'sed', 'Sed0019010' => 'sed', 'Sed0020188' => 'sed', 'SEGI_04702' => 'sgi', 'SEGI_17231' => 'sgi', 'SEGI_18877' => 'sgi', 'SEGI_25196' => 'sgi', 'SEGI_25515' => 'sgi', 'SEGI_28445' => 'sgi', 'SEGI_37452' => 'sgi', 'SGA_v2.0_scaffold188G40336' => 'sas', 'SGA_v2.0_scaffold228G43247' => 'sas', 'SGA_v2.0_scaffold280G46853' => 'sas', 'SGA_v2.0_scaffold34G13808' => 'sas', 'SGA_v2.0_scaffold40G15576' => 'sas', 'SGA_v2.0_scaffold611G53188' => 'sas', 'SGA_v2.0_scaffold78G25461' => 'sas', 'SGA_v2.0_scaffold90G27888' => 'sas', 'SHI08601' => 'shi', 'SHI08606' => 'shi', 'SHI17117' => 'shi', 'SHI17119' => 'shi', 'SMO118G0201' => 'smo', 'SMO169G0247' => 'smo', 'SMO176G0006' => 'smo', 'SMO176G0015' => 'smo', 'SMO202G0006' => 'smo', 'SMO240G0050' => 'smo', 'SMO286G0009' => 'smo', 'SMO338G0033' => 'smo', 'SMO356G0533' => 'smo', 'SMO364G0382' => 'smo', 'SMO367G0166' => 'smo', 'SMO367G1098' => 'smo', 'Solyc01g009920.3' => 'sly', 'Solyc01g099300.3' => 'sly', 'Solyc02g084700.3' => 'sly', 'Solyc03g097520.3' => 'sly', 'Solyc06g071580.3' => 'sly', 'Solyc10g081760.3' => 'sly', 'Sopen01g005480' => 'spe', 'Sopen01g042850' => 'spe', 'Sopen02g029370' => 'spe', 'Sopen03g028280' => 'spe', 'Sopen06g027870' => 'spe', 'Sopen10g032270' => 'spe', 'Sp5g18180' => 'spa', 'Sp6g12880' => 'spa', 'Sp6g30850' => 'spa', 'Sp7g22960' => 'spa', 'Sp7g34010' => 'spa', 'SpUn1326_0010' => 'spa', 'TAR371G0242' => 'tar', 'TAR622G0638' => 'tar', 'TAR628G1548' => 'tar', 'TAR629G1079' => 'tar', 'TAR629G3413' => 'tar', 'THA.LOC104804249' => 'tha', 'THA.LOC104808315' => 'tha', 'THA.LOC104809238' => 'tha', 'THA.LOC104825484' => 'tha', 'Thecc.01G025500' => 'tca', 'Thecc.03G015800' => 'tca', 'Thecc.03G018000' => 'tca', 'Thecc.03G134800' => 'tca', 'Thecc.04G014700' => 'tca', 'Thhalv10006991m.g' => 'esa', 'Thhalv10012707m.g' => 'esa', 'Thhalv10015739m.g' => 'esa', 'Thhalv10024553m.g' => 'esa', 'Thhalv10024673m.g' => 'esa', 'Thhalv10029187m.g' => 'esa', 'TPR.G12971' => 'tpr', 'TPR.G29396' => 'tpr', 'TPR.G33376' => 'tpr', 'TPR.G35508' => 'tpr', 'TPR.G35516' => 'tpr', 'TPR.G37317' => 'tpr', 'TPR.G37389' => 'tpr', 'TPR.G37523' => 'tpr', 'TPR.G559' => 'tpr', 'TWI14G0070' => 'twi', 'TWI14G0729' => 'twi', 'TWI18G0596' => 'twi', 'TWI39G0780' => 'twi', 'TWI39G0850' => 'twi', 'TWI73G1052' => 'twi', 'unitig_52.g17485' => 'ugi', 'unitig_61.g26355' => 'ugi', 'vmacro01040' => 'vma', 'vmacro16731' => 'vma', 'vmacro18270' => 'vma', 'vmacro19142' => 'vma', 'vmacro19407' => 'vma', 'vmacro19408' => 'vma', 'vmacro21899' => 'vma', 'vmacro21900' => 'vma', 'vmacro21901' => 'vma', 'VMungo0251G0490' => 'vmu', 'VMungo0251G1748' => 'vmu', 'VMungo1309G0421' => 'vmu', 'Zm00001eb086500' => 'zma', 'Zm00001eb150680' => 'zma', 'Zm00001eb162330' => 'zma', 'Zm00001eb203130' => 'zma', 'Zm00001eb369480' => 'zma', 'Zm00001eb382340' => 'zma', 'Zm00001eb416360' => 'zma' ), 'gf_id' => 'HOM05D000902', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000902' ), 'data_identifier' => 'HOM05D000902', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000902', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '663', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02470' => 'bna', 'A01p16260' => 'bna', 'A02p01680' => 'bna', 'A03p16600' => 'bna', 'A03p55660' => 'bna', 'A03p64160' => 'bna', 'A03p64170' => 'bna', 'A08p31900' => 'bna', 'A09p59530' => 'bna', 'A10p08230' => 'bna', 'A10p25090' => 'bna', 'Aa31LG3G7100' => 'aar', 'Aa31LG3G7110' => 'aar', 'Aa31LG6G13160' => 'aar', 'Aa31LG7G10770' => 'aar', 'Aa31LG7G3830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2723' => 'aag', 'Actinidia08045' => 'ach', 'Actinidia08888' => 'ach', 'Actinidia18333' => 'ach', 'Actinidia19334' => 'ach', 'Actinidia25552' => 'ach', 'Actinidia26089' => 'ach', 'Actinidia30615' => 'ach', 'Actinidia30616' => 'ach', 'Actinidia33083' => 'ach', 'Actinidia35762' => 'ach', 'Ah.02g110620' => 'amhyb', 'Ah.11g046390' => 'amhyb', 'AL1G31670' => 'aly', 'AL6G23730' => 'aly', 'AL7G14740' => 'aly', 'AL7G14750' => 'aly', 'AL7G14760' => 'aly', 'AL7G28220' => 'aly', 'AL8G24940' => 'aly', 'Aqoxy3G01665' => 'aox', 'Aqoxy3G02853' => 'aox', 'Aqoxy5G01513' => 'aox', 'Aqoxy5G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8SKA4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ75LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKDA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0LJZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7REX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZP4YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWX7I5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2QKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS0L9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPCD8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q161UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC7XCF' => 'arhy', 'AT1G19100' => 'ath', 'AT4G24970' => 'ath', 'AT4G36270' => 'ath', 'AT4G36280' => 'ath', 'AT4G36290' => 'ath', 'AT5G13130' => 'ath', 'AT5G50780' => 'ath', 'ATR0582G266' => 'atr', 'ATR0661G195' => 'atr', 'ATR1152G031' => 'atr', 'Atru.chr11.2382' => 'acertr', 'Atru.chr12.2337' => 'acertr', 'Atru.chr3.744' => 'acertr', 'Atru.chr6.1870' => 'acertr', 'Atru.chr9.2515' => 'acertr', 'AUR62004120' => 'cqu', 'AUR62005667' => 'cqu', 'AUR62007634' => 'cqu', 'AUR62008186' => 'cqu', 'AUR62008187' => 'cqu', 'AUR62008188' => 'cqu', 'AUR62027954' => 'cqu', 'AUR62028766' => 'cqu', 'AUR62028767' => 'cqu', 'AUR62028768' => 'cqu', 'AUR62028886' => 'cqu', 'AUR62029563' => 'cqu', 'AUR62038832' => 'cqu', 'BcaB01g04149' => 'bca', 'BcaB03g12940' => 'bca', 'BcaB03g13090' => 'bca', 'BcaB03g14466' => 'bca', 'BcaB05g24035' => 'bca', 'BcaC01g06050' => 'bca', 'BcaC04g19148' => 'bca', 'BcaC04g20761' => 'bca', 'BcaC06g32845' => 'bca', 'BcaC07g41274' => 'bca', 'BcaC09g50827' => 'bca', 'BcaNung00741' => 'bca', 'BcaNung00742' => 'bca', 'BcaNung01859' => 'bca', 'BcaNung03985' => 'bca', 'BcaNung03989' => 'bca', 'BcaNung05661' => 'bca', 'BolC1t00257H' => 'bol', 'BolC1t01956H' => 'bol', 'BolC2t06534H' => 'bol', 'BolC3t14334H' => 'bol', 'BolC5t30451H' => 'bol', 'BolC7t45880H' => 'bol', 'BolC7t46586H' => 'bol', 'BolC8t49301H' => 'bol', 'BolC8t51837H' => 'bol', 'BolC9t56822H' => 'bol', 'BolC9t59235H' => 'bol', 'BraA01t00234Z' => 'bra', 'BraA01t01563Z' => 'bra', 'BraA02t05147Z' => 'bra', 'BraA03t10947Z' => 'bra', 'BraA03t14633Z' => 'bra', 'BraA08t35112Z' => 'bra', 'BraA09t41330Z' => 'bra', 'BraA10t44570Z' => 'bra', 'C01p02670' => 'bna', 'C01p20260' => 'bna', 'C02p05890' => 'bna', 'C03p19530' => 'bna', 'C05p17470' => 'bna', 'C07p53900' => 'bna', 'C07p61630' => 'bna', 'C08p16800' => 'bna', 'C08p42810' => 'bna', 'C09p39480' => 'bna', 'C09p63980' => 'bna', 'CAN.G1001.7' => 'can', 'CAN.G1034.55' => 'can', 'CAN.G143.7' => 'can', 'CAN.G3340.1' => 'can', 'CAN.G358.19' => 'can', 'CAN.G373.2' => 'can', 'CAN.G674.16' => 'can', 'CAN.G674.17' => 'can', 'CAN.G674.18' => 'can', 'CAN.G732.2' => 'can', 'CAN.G732.3' => 'can', 'CAN.G993.39' => 'can', 'CANSAT01G2052' => 'cansat', 'CANSAT80G0070' => 'cansat', 'CANSAT80G0483' => 'cansat', 'CANSAT80G0625' => 'cansat', 'CARHR019690' => 'chi', 'CARHR080280' => 'chi', 'CARHR152750' => 'chi', 'CARHR152760' => 'chi', 'CARHR152770' => 'chi', 'CARHR200340' => 'chi', 'CARHR232370' => 'chi', 'CARHR244670' => 'chi', 'CARHR244680' => 'chi', 'CARHR257520' => 'chi', 'Carub.0001s1872' => 'cru', 'Carub.0006s1130' => 'cru', 'Carub.0007s0396' => 'cru', 'Carub.0007s0397' => 'cru', 'Carub.0007s1608' => 'cru', 'Carub.0008s1068' => 'cru', 'Carub.0008s1077' => 'cru', 'Ca_16158_v3' => 'car', 'Ca_17571_v3' => 'car', 'Ca_21936_v3' => 'car', 'Ca_22350_v3' => 'car', 'CBR_g22445' => 'cbr', 'CBR_g26290' => 'cbr', 'Cc04_g09610' => 'ccan', 'Cc04_g12280' => 'ccan', 'Cc07_g10230' => 'ccan', 'CDE02G0093' => 'cde', 'CDE02G0701' => 'cde', 'CDE04G1050' => 'cde', 'CDE05G1833' => 'cde', 'CDE05G3058' => 'cde', 'CDE05G3380' => 'cde', 'CDE06G0536' => 'cde', 'Cfa006923' => 'cfa', 'Cfa009402' => 'cfa', 'Cfa018751' => 'cfa', 'Cfa019164' => 'cfa', 'Cfa022935' => 'cfa', 'Ciclev10019081m.g' => 'ccl', 'Ciclev10025076m.g' => 'ccl', 'Ciclev10030712m.g' => 'ccl', 'Ciclev10033760m.g' => 'ccl', 'CiPaw.05G105600' => 'cil', 'CiPaw.08G136700' => 'cil', 'CiPaw.11G003900' => 'cil', 'CiPaw.11G023700' => 'cil', 'CiPaw.12G003700' => 'cil', 'ClCG06G017100' => 'cla', 'ClCG06G018110' => 'cla', 'ClCG07G008800' => 'cla', 'ClCG07G015330' => 'cla', 'COL.COLO4_13698' => 'col', 'COL.COLO4_16659' => 'col', 'COL.COLO4_21986' => 'col', 'COL.COLO4_24049' => 'col', 'COL.COLO4_29061' => 'col', 'COL.COLO4_29075' => 'col', 'COL.COLO4_30094' => 'col', 'Cpa.g.c33689' => 'cpa', 'Cpa.g.sc108.39' => 'cpa', 'Cpa.g.sc108.41' => 'cpa', 'Cpa.g.sc1163.1' => 'cpa', 'Cpa.g.sc4.155' => 'cpa', 'Cpa.g.sc6.194' => 'cpa', 'CsaV3_1G000340' => 'csa', 'CsaV3_1G001400' => 'csa', 'CsaV3_4G002220' => 'csa', 'CsaV3_4G005370' => 'csa', 'CSS0007487' => 'camsi', 'CSS0008066' => 'camsi', 'CSS0009120' => 'camsi', 'CSS0015512' => 'camsi', 'CSS0022409' => 'camsi', 'CSS0025358' => 'camsi', 'CSS0044547' => 'camsi', 'DCAR_013057' => 'dca', 'DCAR_015058' => 'dca', 'DCAR_016027' => 'dca', 'DCAR_017327' => 'dca', 'DCAR_020743' => 'dca', 'DCAR_026157' => 'dca', 'DCAR_032339' => 'dca', 'DCAR_032340' => 'dca', 'Dinv11200' => 'din', 'Dinv11201' => 'din', 'Dinv20631' => 'din', 'Dinv23182' => 'din', 'Dinv33466' => 'din', 'Dinv33583' => 'din', 'Dinv38565' => 'din', 'Duzib068G0200' => 'dzi', 'Duzib147G0132' => 'dzi', 'Duzib147G0635' => 'dzi', 'Duzib205G1670' => 'dzi', 'Duzib251G0606' => 'dzi', 'ECA232G3336' => 'eca', 'ECA232G3763' => 'eca', 'ECA232G4845' => 'eca', 'ECA234G1607' => 'eca', 'ECA246G0932' => 'eca', 'ECA247G0781' => 'eca', 'ECA247G1932' => 'eca', 'ECA247G2079' => 'eca', 'ECA247G3338' => 'eca', 'ECA247G4115' => 'eca', 'EL10Ac3g06552' => 'bvu', 'EL10Ac5g10721' => 'bvu', 'EL10Ac5g10722' => 'bvu', 'EL10Ac5g10723' => 'bvu', 'EL10Ac5g11361' => 'bvu', 'EL10Ac6g13553' => 'bvu', 'EL10As8g23872' => 'bvu', 'Eucgr.B00250' => 'egr', 'Eucgr.B00251' => 'egr', 'Eucgr.B03533' => 'egr', 'Eucgr.I02381' => 'egr', 'Eucgr.K02700' => 'egr', 'FAN02G0174' => 'fan', 'FAN02G3146' => 'fan', 'FAN04G1672' => 'fan', 'FAN04G2273' => 'fan', 'FAN05G2791' => 'fan', 'FAN05G4035' => 'fan', 'FAN07G0834' => 'fan', 'FAN08G1198' => 'fan', 'FAN09G4182' => 'fan', 'FAN12G0496' => 'fan', 'FAN13G1027' => 'fan', 'FAN13G2951' => 'fan', 'FAN14G0705' => 'fan', 'FAN14G0720' => 'fan', 'FAN17G0201' => 'fan', 'FAN17G2665' => 'fan', 'FAN18G1456' => 'fan', 'FAN18G1525' => 'fan', 'FAN18G3500' => 'fan', 'FAN28G2670' => 'fan', 'FvH4_1g12391' => 'fve', 'FvH4_4g23220' => 'fve', 'FvH4_5g08810' => 'fve', 'FvH4_5g28960' => 'fve', 'FvH4_6g42820' => 'fve', 'FvH4_6g51110' => 'fve', 'Glyma.02G051802' => 'gma', 'Glyma.04G185300' => 'gma', 'Glyma.05G202900' => 'gma', 'Glyma.08G010300' => 'gma', 'Glyma.16G131900' => 'gma', 'Glyma.17G087900' => 'gma', 'Gohir.A07G048600' => 'ghi', 'Gohir.A11G179000' => 'ghi', 'Gohir.A12G140900' => 'ghi', 'Gohir.A12G140950' => 'ghi', 'Gohir.A12G191700' => 'ghi', 'Gohir.A13G086300' => 'ghi', 'Gohir.D07G052900' => 'ghi', 'Gohir.D11G186600' => 'ghi', 'Gohir.D12G145575' => 'ghi', 'Gohir.D12G145650' => 'ghi', 'Gohir.D12G145725' => 'ghi', 'Gohir.D12G194050' => 'ghi', 'Gohir.D13G091800' => 'ghi', 'Gorai.001G055900' => 'gra', 'Gorai.007G198400' => 'gra', 'Gorai.008G157000' => 'gra', 'Gorai.008G157100' => 'gra', 'Gorai.008G208700' => 'gra', 'Gorai.010G138700' => 'gra', 'GSVIVG01000977001' => 'vvi', 'GSVIVG01007708001' => 'vvi', 'GSVIVG01008587001' => 'vvi', 'GSVIVG01018849001' => 'vvi', 'GSVIVG01032432001' => 'vvi', 'HanXRQChr02g0034131' => 'han', 'HanXRQChr02g0035981' => 'han', 'HanXRQChr02g0035991' => 'han', 'HanXRQChr05g0155611' => 'han', 'HanXRQChr05g0155621' => 'han', 'HanXRQChr08g0236501' => 'han', 'HanXRQChr09g0261321' => 'han', 'HanXRQChr09g0272081' => 'han', 'HanXRQChr10g0310741' => 'han', 'HanXRQChr11g0325591' => 'han', 'HanXRQChr12g0385691' => 'han', 'HanXRQChr13g0387801' => 'han', 'HanXRQChr15g0463011' => 'han', 'Haze_03826' => 'cav', 'Haze_03827' => 'cav', 'Haze_07183' => 'cav', 'Haze_07537' => 'cav', 'Haze_07539' => 'cav', 'Haze_12461' => 'cav', 'Haze_16115' => 'cav', 'Haze_16808' => 'cav', 'Haze_18531' => 'cav', 'Hma1.2p1_0046F.1_g026700' => 'hma', 'Hma1.2p1_0046F.1_g026710' => 'hma', 'Hma1.2p1_0168F.1_g074340' => 'hma', 'Hma1.2p1_0266F.1_g107030' => 'hma', 'Hma1.2p1_0266F.1_g107060' => 'hma', 'Hma1.2p1_0275F.1_g110510' => 'hma', 'Hma1.2p1_0592F.1_g185490' => 'hma', 'Hma1.2p1_0592F.1_g185500' => 'hma', 'Hma1.2p1_0592F.1_g185510' => 'hma', 'Hma1.2p1_0592F.1_g185520' => 'hma', 'Hma1.2p1_0592F.1_g185530' => 'hma', 'Hma1.2p1_0818F.1_g223450' => 'hma', 'HPP92_009708' => 'vpl', 'HPP92_009793' => 'vpl', 'HPP92_009796' => 'vpl', 'HPP92_009797' => 'vpl', 'HPP92_014940' => 'vpl', 'HPP92_014988' => 'vpl', 'Hund02463' => 'sun', 'Hund02760' => 'sun', 'Hund05071' => 'sun', 'Hund10108' => 'sun', 'Hund11204' => 'sun', 'Hund14016' => 'sun', 'Hund16464' => 'sun', 'Lalb_Chr09g0333391' => 'lal', 'Lalb_Chr11g0070461' => 'lal', 'Lalb_Chr12g0201671' => 'lal', 'Lalb_Chr13g0297161' => 'lal', 'Lj1g0002823' => 'lja', 'Lj3C1074T6' => 'lonja', 'Lj4A212T28' => 'lonja', 'Lj4g0005516' => 'lja', 'Lj4g0013705' => 'lja', 'Lj4g0027865' => 'lja', 'Lj5C92G16' => 'lonja', 'Lj5C92T12' => 'lonja', 'Lj7C596T3' => 'lonja', 'Lj9A446G59' => 'lonja', 'Lj9A482G21' => 'lonja', 'Lsat_1_v5_gn_1_28261' => 'lsa', 'Lsat_1_v5_gn_1_28281' => 'lsa', 'Lsat_1_v5_gn_1_32721' => 'lsa', 'Lsat_1_v5_gn_4_151760' => 'lsa', 'Lsat_1_v5_gn_4_2120' => 'lsa', 'Lsat_1_v5_gn_4_75761' => 'lsa', 'Lsat_1_v5_gn_5_10920' => 'lsa', 'Manes.02G099900' => 'mes', 'Manes.11G096200' => 'mes', 'Manes.12G007200' => 'mes', 'Manes.14G048300' => 'mes', 'Manes.17G114700' => 'mes', 'Mapoly0002s0070' => 'mpo', 'Mapoly0029s0099' => 'mpo', 'MBI07_g24742_MAGBIO' => 'mbi', 'MBI10_g27988_MAGBIO' => 'mbi', 'MBI11_g13057_MAGBIO' => 'mbi', 'MD02G1137200' => 'mdo', 'MD06G1137200' => 'mdo', 'MD07G1122300' => 'mdo', 'MD09G1078200' => 'mdo', 'MD13G1123700' => 'mdo', 'MD14G1151900' => 'mdo', 'MD17G1030900' => 'mdo', 'MD17G1068200' => 'mdo', 'MD17G1068600' => 'mdo', 'Medtr3g077540' => 'mtr', 'Medtr4g105530' => 'mtr', 'Medtr8g076580' => 'mtr', 'Medtr8g076590' => 'mtr', 'Medtr8g096410' => 'mtr', 'MELO3C016411.2' => 'cme', 'MELO3C017780.2' => 'cme', 'MELO3C022560.2' => 'cme', 'MELO3C026187.2' => 'cme', 'MELO3C026286.2' => 'cme', 'MELO3C032854.2' => 'cme', 'Migut.H02495' => 'egut', 'Migut.I00561' => 'egut', 'Migut.K01015' => 'egut', 'Migut.K01016' => 'egut', 'Migut.L00743' => 'egut', 'Migut.L00744' => 'egut', 'Migut.L00746' => 'egut', 'Migut.L00798' => 'egut', 'Migut.L00799' => 'egut', 'Migut.N02096' => 'egut', 'MSTRG.11259' => 'ama', 'MSTRG.23142' => 'ama', 'MSTRG.2499' => 'ama', 'Nitab4.5_0000003g0730' => 'nta', 'Nitab4.5_0000137g0020' => 'nta', 'Nitab4.5_0000721g0210' => 'nta', 'Nitab4.5_0000723g0050' => 'nta', 'Nitab4.5_0000913g0070' => 'nta', 'Nitab4.5_0001332g0040' => 'nta', 'Nitab4.5_0001771g0050' => 'nta', 'Nitab4.5_0001918g0050' => 'nta', 'Nitab4.5_0002686g0030' => 'nta', 'Nitab4.5_0003156g0020' => 'nta', 'Nitab4.5_0003383g0040' => 'nta', 'Nitab4.5_0003918g0010' => 'nta', 'Nitab4.5_0006760g0010' => 'nta', 'Nn1g05981' => 'nnu', 'Nn1g06288' => 'nnu', 'Nn3g16371' => 'nnu', 'Nn3g16786' => 'nnu', 'Nn4g22232' => 'nnu', 'Oeu005144.1' => 'oeu', 'Oeu005145.1' => 'oeu', 'Oeu011348.1' => 'oeu', 'Oeu016415.1' => 'oeu', 'Oeu023501.1' => 'oeu', 'Oeu044473.1' => 'oeu', 'Oeu048892.2' => 'oeu', 'Os01g0549200' => 'osa', 'Os02g0469300' => 'osa', 'Os04g0311100' => 'osa', 'Os06g0474900' => 'osa', 'Os10g0181700' => 'osa', 'Os11g0454800' => 'osa', 'Peaxi162Scf00037g00714' => 'pax', 'Peaxi162Scf00084g01217' => 'pax', 'Peaxi162Scf00257g00217' => 'pax', 'Peaxi162Scf00516g00215' => 'pax', 'Peaxi162Scf00689g00123' => 'pax', 'PGR044G2719' => 'pgr', 'PGR083G1360' => 'pgr', 'PGR102G2849' => 'pgr', 'PGR119G2534' => 'pgr', 'PGSC0003DMG400003538' => 'stu', 'PGSC0003DMG400028138' => 'stu', 'PGSC0003DMG400031732' => 'stu', 'PGSC0003DMG400038165' => 'stu', 'Phvul.002G284600' => 'pvu', 'Phvul.003G258200' => 'pvu', 'Phvul.009G176500' => 'pvu', 'Potri.003G167201' => 'ptr', 'Potri.005G118400' => 'ptr', 'Potri.012G089000' => 'ptr', 'Potri.012G102800' => 'ptr', 'Potri.015G079400' => 'ptr', 'Potri.015G100900' => 'ptr', 'Pp3c14_9810' => 'ppa', 'Pp3c15_10450' => 'ppa', 'Pp3c20_19150' => 'ppa', 'Pp3c23_12740' => 'ppa', 'Pp3c23_6310' => 'ppa', 'Pp3c24_3720' => 'ppa', 'Pp3c27_2580' => 'ppa', 'Pp3c9_8990' => 'ppa', 'PRCOL_00002854' => 'pco', 'Prupe.1G221200' => 'ppe', 'Prupe.3G289000' => 'ppe', 'Prupe.5G147000' => 'ppe', 'Prupe.6G157300' => 'ppe', 'Prupe.7G163400' => 'ppe', 'Psat0s2177g0040' => 'psa', 'Psat3g174760' => 'psa', 'Psat3g192160' => 'psa', 'Psat4g058520' => 'psa', 'Psat4g096840' => 'psa', 'Psat7g037320' => 'psa', 'PSO017G1274' => 'pso', 'PSO017G5166' => 'pso', 'PSO063G4558' => 'pso', 'PSO170G4458' => 'pso', 'PSO170G5005' => 'pso', 'PSO210G6156' => 'pso', 'PSO210G6635' => 'pso', 'PSO210G7397' => 'pso', 'PSO210G7700' => 'pso', 'PSO455G0035' => 'pso', 'PSO455G0180' => 'pso', 'PSO478G4515' => 'pso', 'PSO832G1305' => 'pso', 'PSO832G3489' => 'pso', 'QL02p075247' => 'qlo', 'QL03p051148' => 'qlo', 'QL05p010313' => 'qlo', 'QL06p034627' => 'qlo', 'QL10p001889' => 'qlo', 'QL10p010846' => 'qlo', 'RcHm_v2.0_Chr1g0350621' => 'rch', 'RcHm_v2.0_Chr1g0350641' => 'rch', 'RcHm_v2.0_Chr2g0092891' => 'rch', 'RcHm_v2.0_Chr2g0100251' => 'rch', 'RcHm_v2.0_Chr2g0158661' => 'rch', 'RcHm_v2.0_Chr2g0172741' => 'rch', 'RcHm_v2.0_Chr4g0429571' => 'rch', 'RcHm_v2.0_Chr5g0042471' => 'rch', 'RcHm_v2.0_Chr7g0189451' => 'rch', 'Rhsim08G0052000' => 'rsi', 'Rhsim08G0174400' => 'rsi', 'Rhsim08G0193200' => 'rsi', 'Rhsim10G0214800' => 'rsi', 'Rhsim10G0214900' => 'rsi', 'Rhsim10G0215000' => 'rsi', 'Rhsim12G0022900' => 'rsi', 'Rhsim12G0177500' => 'rsi', 'Rhsim12G0177700' => 'rsi', 'Sabra03G0122600' => 'sbr', 'Sabra05G0097400' => 'sbr', 'Sabra12G0064100' => 'sbr', 'Sabra15G0121300' => 'sbr', 'SalBow2G0642' => 'sbo', 'SalBow5G2667' => 'sbo', 'SalBow5G4873' => 'sbo', 'SalBow8G2395' => 'sbo', 'Sc03g0003290' => 'sci', 'Sc10g0010130' => 'sci', 'Sc22g0003650' => 'sci', 'Sed0001603' => 'sed', 'Sed0004259' => 'sed', 'Sed0006789' => 'sed', 'Sed0011838' => 'sed', 'Sed0012964' => 'sed', 'Sed0016383' => 'sed', 'Sed0019010' => 'sed', 'Sed0020188' => 'sed', 'SEGI_04702' => 'sgi', 'SEGI_17231' => 'sgi', 'SEGI_18877' => 'sgi', 'SEGI_25196' => 'sgi', 'SEGI_25515' => 'sgi', 'SEGI_28445' => 'sgi', 'SEGI_37452' => 'sgi', 'SGA_v2.0_scaffold188G40336' => 'sas', 'SGA_v2.0_scaffold228G43247' => 'sas', 'SGA_v2.0_scaffold280G46853' => 'sas', 'SGA_v2.0_scaffold34G13808' => 'sas', 'SGA_v2.0_scaffold40G15576' => 'sas', 'SGA_v2.0_scaffold611G53188' => 'sas', 'SGA_v2.0_scaffold78G25461' => 'sas', 'SGA_v2.0_scaffold90G27888' => 'sas', 'SHI08601' => 'shi', 'SHI08606' => 'shi', 'SHI17117' => 'shi', 'SHI17119' => 'shi', 'SMO118G0201' => 'smo', 'SMO169G0247' => 'smo', 'SMO176G0006' => 'smo', 'SMO176G0015' => 'smo', 'SMO202G0006' => 'smo', 'SMO240G0050' => 'smo', 'SMO286G0009' => 'smo', 'SMO338G0033' => 'smo', 'SMO356G0533' => 'smo', 'SMO364G0382' => 'smo', 'SMO367G0166' => 'smo', 'SMO367G1098' => 'smo', 'Solyc01g009920.3' => 'sly', 'Solyc01g099300.3' => 'sly', 'Solyc02g084700.3' => 'sly', 'Solyc03g097520.3' => 'sly', 'Solyc06g071580.3' => 'sly', 'Solyc10g081760.3' => 'sly', 'Sopen01g005480' => 'spe', 'Sopen01g042850' => 'spe', 'Sopen02g029370' => 'spe', 'Sopen03g028280' => 'spe', 'Sopen06g027870' => 'spe', 'Sopen10g032270' => 'spe', 'Sp5g18180' => 'spa', 'Sp6g12880' => 'spa', 'Sp6g30850' => 'spa', 'Sp7g22960' => 'spa', 'Sp7g34010' => 'spa', 'SpUn1326_0010' => 'spa', 'TAR371G0242' => 'tar', 'TAR622G0638' => 'tar', 'TAR628G1548' => 'tar', 'TAR629G1079' => 'tar', 'TAR629G3413' => 'tar', 'THA.LOC104804249' => 'tha', 'THA.LOC104808315' => 'tha', 'THA.LOC104809238' => 'tha', 'THA.LOC104825484' => 'tha', 'Thecc.01G025500' => 'tca', 'Thecc.03G015800' => 'tca', 'Thecc.03G018000' => 'tca', 'Thecc.03G134800' => 'tca', 'Thecc.04G014700' => 'tca', 'Thhalv10006991m.g' => 'esa', 'Thhalv10012707m.g' => 'esa', 'Thhalv10015739m.g' => 'esa', 'Thhalv10024553m.g' => 'esa', 'Thhalv10024673m.g' => 'esa', 'Thhalv10029187m.g' => 'esa', 'TPR.G12971' => 'tpr', 'TPR.G29396' => 'tpr', 'TPR.G33376' => 'tpr', 'TPR.G35508' => 'tpr', 'TPR.G35516' => 'tpr', 'TPR.G37317' => 'tpr', 'TPR.G37389' => 'tpr', 'TPR.G37523' => 'tpr', 'TPR.G559' => 'tpr', 'TWI14G0070' => 'twi', 'TWI14G0729' => 'twi', 'TWI18G0596' => 'twi', 'TWI39G0780' => 'twi', 'TWI39G0850' => 'twi', 'TWI73G1052' => 'twi', 'unitig_52.g17485' => 'ugi', 'unitig_61.g26355' => 'ugi', 'vmacro01040' => 'vma', 'vmacro16731' => 'vma', 'vmacro18270' => 'vma', 'vmacro19142' => 'vma', 'vmacro19407' => 'vma', 'vmacro19408' => 'vma', 'vmacro21899' => 'vma', 'vmacro21900' => 'vma', 'vmacro21901' => 'vma', 'VMungo0251G0490' => 'vmu', 'VMungo0251G1748' => 'vmu', 'VMungo1309G0421' => 'vmu', 'Zm00001eb086500' => 'zma', 'Zm00001eb150680' => 'zma', 'Zm00001eb162330' => 'zma', 'Zm00001eb203130' => 'zma', 'Zm00001eb369480' => 'zma', 'Zm00001eb382340' => 'zma', 'Zm00001eb416360' => 'zma' ) $gf_id = 'HOM05D000902' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000902' ) $data_identifier = 'HOM05D000902' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 13, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 10, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 6, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 9, 'hma' => (int) 12, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 4, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 6, 'ppa' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 6, 'rch' => (int) 9, 'rsi' => (int) 9, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 12, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 3, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416360' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000902', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '663', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02470' => 'bna', 'A01p16260' => 'bna', 'A02p01680' => 'bna', 'A03p16600' => 'bna', 'A03p55660' => 'bna', 'A03p64160' => 'bna', 'A03p64170' => 'bna', 'A08p31900' => 'bna', 'A09p59530' => 'bna', 'A10p08230' => 'bna', 'A10p25090' => 'bna', 'Aa31LG3G7100' => 'aar', 'Aa31LG3G7110' => 'aar', 'Aa31LG6G13160' => 'aar', 'Aa31LG7G10770' => 'aar', 'Aa31LG7G3830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2723' => 'aag', 'Actinidia08045' => 'ach', 'Actinidia08888' => 'ach', 'Actinidia18333' => 'ach', 'Actinidia19334' => 'ach', 'Actinidia25552' => 'ach', 'Actinidia26089' => 'ach', 'Actinidia30615' => 'ach', 'Actinidia30616' => 'ach', 'Actinidia33083' => 'ach', 'Actinidia35762' => 'ach', 'Ah.02g110620' => 'amhyb', 'Ah.11g046390' => 'amhyb', 'AL1G31670' => 'aly', 'AL6G23730' => 'aly', 'AL7G14740' => 'aly', 'AL7G14750' => 'aly', 'AL7G14760' => 'aly', 'AL7G28220' => 'aly', 'AL8G24940' => 'aly', 'Aqoxy3G01665' => 'aox', 'Aqoxy3G02853' => 'aox', 'Aqoxy5G01513' => 'aox', 'Aqoxy5G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8SKA4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ75LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKDA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0LJZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7REX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZP4YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWX7I5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2QKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS0L9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPCD8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q161UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC7XCF' => 'arhy', 'AT1G19100' => 'ath', 'AT4G24970' => 'ath', 'AT4G36270' => 'ath', 'AT4G36280' => 'ath', 'AT4G36290' => 'ath', 'AT5G13130' => 'ath', 'AT5G50780' => 'ath', 'ATR0582G266' => 'atr', 'ATR0661G195' => 'atr', 'ATR1152G031' => 'atr', 'Atru.chr11.2382' => 'acertr', 'Atru.chr12.2337' => 'acertr', 'Atru.chr3.744' => 'acertr', 'Atru.chr6.1870' => 'acertr', 'Atru.chr9.2515' => 'acertr', 'AUR62004120' => 'cqu', 'AUR62005667' => 'cqu', 'AUR62007634' => 'cqu', 'AUR62008186' => 'cqu', 'AUR62008187' => 'cqu', 'AUR62008188' => 'cqu', 'AUR62027954' => 'cqu', 'AUR62028766' => 'cqu', 'AUR62028767' => 'cqu', 'AUR62028768' => 'cqu', 'AUR62028886' => 'cqu', 'AUR62029563' => 'cqu', 'AUR62038832' => 'cqu', 'BcaB01g04149' => 'bca', 'BcaB03g12940' => 'bca', 'BcaB03g13090' => 'bca', 'BcaB03g14466' => 'bca', 'BcaB05g24035' => 'bca', 'BcaC01g06050' => 'bca', 'BcaC04g19148' => 'bca', 'BcaC04g20761' => 'bca', 'BcaC06g32845' => 'bca', 'BcaC07g41274' => 'bca', 'BcaC09g50827' => 'bca', 'BcaNung00741' => 'bca', 'BcaNung00742' => 'bca', 'BcaNung01859' => 'bca', 'BcaNung03985' => 'bca', 'BcaNung03989' => 'bca', 'BcaNung05661' => 'bca', 'BolC1t00257H' => 'bol', 'BolC1t01956H' => 'bol', 'BolC2t06534H' => 'bol', 'BolC3t14334H' => 'bol', 'BolC5t30451H' => 'bol', 'BolC7t45880H' => 'bol', 'BolC7t46586H' => 'bol', 'BolC8t49301H' => 'bol', 'BolC8t51837H' => 'bol', 'BolC9t56822H' => 'bol', 'BolC9t59235H' => 'bol', 'BraA01t00234Z' => 'bra', 'BraA01t01563Z' => 'bra', 'BraA02t05147Z' => 'bra', 'BraA03t10947Z' => 'bra', 'BraA03t14633Z' => 'bra', 'BraA08t35112Z' => 'bra', 'BraA09t41330Z' => 'bra', 'BraA10t44570Z' => 'bra', 'C01p02670' => 'bna', 'C01p20260' => 'bna', 'C02p05890' => 'bna', 'C03p19530' => 'bna', 'C05p17470' => 'bna', 'C07p53900' => 'bna', 'C07p61630' => 'bna', 'C08p16800' => 'bna', 'C08p42810' => 'bna', 'C09p39480' => 'bna', 'C09p63980' => 'bna', 'CAN.G1001.7' => 'can', 'CAN.G1034.55' => 'can', 'CAN.G143.7' => 'can', 'CAN.G3340.1' => 'can', 'CAN.G358.19' => 'can', 'CAN.G373.2' => 'can', 'CAN.G674.16' => 'can', 'CAN.G674.17' => 'can', 'CAN.G674.18' => 'can', 'CAN.G732.2' => 'can', 'CAN.G732.3' => 'can', 'CAN.G993.39' => 'can', 'CANSAT01G2052' => 'cansat', 'CANSAT80G0070' => 'cansat', 'CANSAT80G0483' => 'cansat', 'CANSAT80G0625' => 'cansat', 'CARHR019690' => 'chi', 'CARHR080280' => 'chi', 'CARHR152750' => 'chi', 'CARHR152760' => 'chi', 'CARHR152770' => 'chi', 'CARHR200340' => 'chi', 'CARHR232370' => 'chi', 'CARHR244670' => 'chi', 'CARHR244680' => 'chi', 'CARHR257520' => 'chi', 'Carub.0001s1872' => 'cru', 'Carub.0006s1130' => 'cru', 'Carub.0007s0396' => 'cru', 'Carub.0007s0397' => 'cru', 'Carub.0007s1608' => 'cru', 'Carub.0008s1068' => 'cru', 'Carub.0008s1077' => 'cru', 'Ca_16158_v3' => 'car', 'Ca_17571_v3' => 'car', 'Ca_21936_v3' => 'car', 'Ca_22350_v3' => 'car', 'CBR_g22445' => 'cbr', 'CBR_g26290' => 'cbr', 'Cc04_g09610' => 'ccan', 'Cc04_g12280' => 'ccan', 'Cc07_g10230' => 'ccan', 'CDE02G0093' => 'cde', 'CDE02G0701' => 'cde', 'CDE04G1050' => 'cde', 'CDE05G1833' => 'cde', 'CDE05G3058' => 'cde', 'CDE05G3380' => 'cde', 'CDE06G0536' => 'cde', 'Cfa006923' => 'cfa', 'Cfa009402' => 'cfa', 'Cfa018751' => 'cfa', 'Cfa019164' => 'cfa', 'Cfa022935' => 'cfa', 'Ciclev10019081m.g' => 'ccl', 'Ciclev10025076m.g' => 'ccl', 'Ciclev10030712m.g' => 'ccl', 'Ciclev10033760m.g' => 'ccl', 'CiPaw.05G105600' => 'cil', 'CiPaw.08G136700' => 'cil', 'CiPaw.11G003900' => 'cil', 'CiPaw.11G023700' => 'cil', 'CiPaw.12G003700' => 'cil', 'ClCG06G017100' => 'cla', 'ClCG06G018110' => 'cla', 'ClCG07G008800' => 'cla', 'ClCG07G015330' => 'cla', 'COL.COLO4_13698' => 'col', 'COL.COLO4_16659' => 'col', 'COL.COLO4_21986' => 'col', 'COL.COLO4_24049' => 'col', 'COL.COLO4_29061' => 'col', 'COL.COLO4_29075' => 'col', 'COL.COLO4_30094' => 'col', 'Cpa.g.c33689' => 'cpa', 'Cpa.g.sc108.39' => 'cpa', 'Cpa.g.sc108.41' => 'cpa', 'Cpa.g.sc1163.1' => 'cpa', 'Cpa.g.sc4.155' => 'cpa', 'Cpa.g.sc6.194' => 'cpa', 'CsaV3_1G000340' => 'csa', 'CsaV3_1G001400' => 'csa', 'CsaV3_4G002220' => 'csa', 'CsaV3_4G005370' => 'csa', 'CSS0007487' => 'camsi', 'CSS0008066' => 'camsi', 'CSS0009120' => 'camsi', 'CSS0015512' => 'camsi', 'CSS0022409' => 'camsi', 'CSS0025358' => 'camsi', 'CSS0044547' => 'camsi', 'DCAR_013057' => 'dca', 'DCAR_015058' => 'dca', 'DCAR_016027' => 'dca', 'DCAR_017327' => 'dca', 'DCAR_020743' => 'dca', 'DCAR_026157' => 'dca', 'DCAR_032339' => 'dca', 'DCAR_032340' => 'dca', 'Dinv11200' => 'din', 'Dinv11201' => 'din', 'Dinv20631' => 'din', 'Dinv23182' => 'din', 'Dinv33466' => 'din', 'Dinv33583' => 'din', 'Dinv38565' => 'din', 'Duzib068G0200' => 'dzi', 'Duzib147G0132' => 'dzi', 'Duzib147G0635' => 'dzi', 'Duzib205G1670' => 'dzi', 'Duzib251G0606' => 'dzi', 'ECA232G3336' => 'eca', 'ECA232G3763' => 'eca', 'ECA232G4845' => 'eca', 'ECA234G1607' => 'eca', 'ECA246G0932' => 'eca', 'ECA247G0781' => 'eca', 'ECA247G1932' => 'eca', 'ECA247G2079' => 'eca', 'ECA247G3338' => 'eca', 'ECA247G4115' => 'eca', 'EL10Ac3g06552' => 'bvu', 'EL10Ac5g10721' => 'bvu', 'EL10Ac5g10722' => 'bvu', 'EL10Ac5g10723' => 'bvu', 'EL10Ac5g11361' => 'bvu', 'EL10Ac6g13553' => 'bvu', 'EL10As8g23872' => 'bvu', 'Eucgr.B00250' => 'egr', 'Eucgr.B00251' => 'egr', 'Eucgr.B03533' => 'egr', 'Eucgr.I02381' => 'egr', 'Eucgr.K02700' => 'egr', 'FAN02G0174' => 'fan', 'FAN02G3146' => 'fan', 'FAN04G1672' => 'fan', 'FAN04G2273' => 'fan', 'FAN05G2791' => 'fan', 'FAN05G4035' => 'fan', 'FAN07G0834' => 'fan', 'FAN08G1198' => 'fan', 'FAN09G4182' => 'fan', 'FAN12G0496' => 'fan', 'FAN13G1027' => 'fan', 'FAN13G2951' => 'fan', 'FAN14G0705' => 'fan', 'FAN14G0720' => 'fan', 'FAN17G0201' => 'fan', 'FAN17G2665' => 'fan', 'FAN18G1456' => 'fan', 'FAN18G1525' => 'fan', 'FAN18G3500' => 'fan', 'FAN28G2670' => 'fan', 'FvH4_1g12391' => 'fve', 'FvH4_4g23220' => 'fve', 'FvH4_5g08810' => 'fve', 'FvH4_5g28960' => 'fve', 'FvH4_6g42820' => 'fve', 'FvH4_6g51110' => 'fve', 'Glyma.02G051802' => 'gma', 'Glyma.04G185300' => 'gma', 'Glyma.05G202900' => 'gma', 'Glyma.08G010300' => 'gma', 'Glyma.16G131900' => 'gma', 'Glyma.17G087900' => 'gma', 'Gohir.A07G048600' => 'ghi', 'Gohir.A11G179000' => 'ghi', 'Gohir.A12G140900' => 'ghi', 'Gohir.A12G140950' => 'ghi', 'Gohir.A12G191700' => 'ghi', 'Gohir.A13G086300' => 'ghi', 'Gohir.D07G052900' => 'ghi', 'Gohir.D11G186600' => 'ghi', 'Gohir.D12G145575' => 'ghi', 'Gohir.D12G145650' => 'ghi', 'Gohir.D12G145725' => 'ghi', 'Gohir.D12G194050' => 'ghi', 'Gohir.D13G091800' => 'ghi', 'Gorai.001G055900' => 'gra', 'Gorai.007G198400' => 'gra', 'Gorai.008G157000' => 'gra', 'Gorai.008G157100' => 'gra', 'Gorai.008G208700' => 'gra', 'Gorai.010G138700' => 'gra', 'GSVIVG01000977001' => 'vvi', 'GSVIVG01007708001' => 'vvi', 'GSVIVG01008587001' => 'vvi', 'GSVIVG01018849001' => 'vvi', 'GSVIVG01032432001' => 'vvi', 'HanXRQChr02g0034131' => 'han', 'HanXRQChr02g0035981' => 'han', 'HanXRQChr02g0035991' => 'han', 'HanXRQChr05g0155611' => 'han', 'HanXRQChr05g0155621' => 'han', 'HanXRQChr08g0236501' => 'han', 'HanXRQChr09g0261321' => 'han', 'HanXRQChr09g0272081' => 'han', 'HanXRQChr10g0310741' => 'han', 'HanXRQChr11g0325591' => 'han', 'HanXRQChr12g0385691' => 'han', 'HanXRQChr13g0387801' => 'han', 'HanXRQChr15g0463011' => 'han', 'Haze_03826' => 'cav', 'Haze_03827' => 'cav', 'Haze_07183' => 'cav', 'Haze_07537' => 'cav', 'Haze_07539' => 'cav', 'Haze_12461' => 'cav', 'Haze_16115' => 'cav', 'Haze_16808' => 'cav', 'Haze_18531' => 'cav', 'Hma1.2p1_0046F.1_g026700' => 'hma', 'Hma1.2p1_0046F.1_g026710' => 'hma', 'Hma1.2p1_0168F.1_g074340' => 'hma', 'Hma1.2p1_0266F.1_g107030' => 'hma', 'Hma1.2p1_0266F.1_g107060' => 'hma', 'Hma1.2p1_0275F.1_g110510' => 'hma', 'Hma1.2p1_0592F.1_g185490' => 'hma', 'Hma1.2p1_0592F.1_g185500' => 'hma', 'Hma1.2p1_0592F.1_g185510' => 'hma', 'Hma1.2p1_0592F.1_g185520' => 'hma', 'Hma1.2p1_0592F.1_g185530' => 'hma', 'Hma1.2p1_0818F.1_g223450' => 'hma', 'HPP92_009708' => 'vpl', 'HPP92_009793' => 'vpl', 'HPP92_009796' => 'vpl', 'HPP92_009797' => 'vpl', 'HPP92_014940' => 'vpl', 'HPP92_014988' => 'vpl', 'Hund02463' => 'sun', 'Hund02760' => 'sun', 'Hund05071' => 'sun', 'Hund10108' => 'sun', 'Hund11204' => 'sun', 'Hund14016' => 'sun', 'Hund16464' => 'sun', 'Lalb_Chr09g0333391' => 'lal', 'Lalb_Chr11g0070461' => 'lal', 'Lalb_Chr12g0201671' => 'lal', 'Lalb_Chr13g0297161' => 'lal', 'Lj1g0002823' => 'lja', 'Lj3C1074T6' => 'lonja', 'Lj4A212T28' => 'lonja', 'Lj4g0005516' => 'lja', 'Lj4g0013705' => 'lja', 'Lj4g0027865' => 'lja', 'Lj5C92G16' => 'lonja', 'Lj5C92T12' => 'lonja', 'Lj7C596T3' => 'lonja', 'Lj9A446G59' => 'lonja', 'Lj9A482G21' => 'lonja', 'Lsat_1_v5_gn_1_28261' => 'lsa', 'Lsat_1_v5_gn_1_28281' => 'lsa', 'Lsat_1_v5_gn_1_32721' => 'lsa', 'Lsat_1_v5_gn_4_151760' => 'lsa', 'Lsat_1_v5_gn_4_2120' => 'lsa', 'Lsat_1_v5_gn_4_75761' => 'lsa', 'Lsat_1_v5_gn_5_10920' => 'lsa', 'Manes.02G099900' => 'mes', 'Manes.11G096200' => 'mes', 'Manes.12G007200' => 'mes', 'Manes.14G048300' => 'mes', 'Manes.17G114700' => 'mes', 'Mapoly0002s0070' => 'mpo', 'Mapoly0029s0099' => 'mpo', 'MBI07_g24742_MAGBIO' => 'mbi', 'MBI10_g27988_MAGBIO' => 'mbi', 'MBI11_g13057_MAGBIO' => 'mbi', 'MD02G1137200' => 'mdo', 'MD06G1137200' => 'mdo', 'MD07G1122300' => 'mdo', 'MD09G1078200' => 'mdo', 'MD13G1123700' => 'mdo', 'MD14G1151900' => 'mdo', 'MD17G1030900' => 'mdo', 'MD17G1068200' => 'mdo', 'MD17G1068600' => 'mdo', 'Medtr3g077540' => 'mtr', 'Medtr4g105530' => 'mtr', 'Medtr8g076580' => 'mtr', 'Medtr8g076590' => 'mtr', 'Medtr8g096410' => 'mtr', 'MELO3C016411.2' => 'cme', 'MELO3C017780.2' => 'cme', 'MELO3C022560.2' => 'cme', 'MELO3C026187.2' => 'cme', 'MELO3C026286.2' => 'cme', 'MELO3C032854.2' => 'cme', 'Migut.H02495' => 'egut', 'Migut.I00561' => 'egut', 'Migut.K01015' => 'egut', 'Migut.K01016' => 'egut', 'Migut.L00743' => 'egut', 'Migut.L00744' => 'egut', 'Migut.L00746' => 'egut', 'Migut.L00798' => 'egut', 'Migut.L00799' => 'egut', 'Migut.N02096' => 'egut', 'MSTRG.11259' => 'ama', 'MSTRG.23142' => 'ama', 'MSTRG.2499' => 'ama', 'Nitab4.5_0000003g0730' => 'nta', 'Nitab4.5_0000137g0020' => 'nta', 'Nitab4.5_0000721g0210' => 'nta', 'Nitab4.5_0000723g0050' => 'nta', 'Nitab4.5_0000913g0070' => 'nta', 'Nitab4.5_0001332g0040' => 'nta', 'Nitab4.5_0001771g0050' => 'nta', 'Nitab4.5_0001918g0050' => 'nta', 'Nitab4.5_0002686g0030' => 'nta', 'Nitab4.5_0003156g0020' => 'nta', 'Nitab4.5_0003383g0040' => 'nta', 'Nitab4.5_0003918g0010' => 'nta', 'Nitab4.5_0006760g0010' => 'nta', 'Nn1g05981' => 'nnu', 'Nn1g06288' => 'nnu', 'Nn3g16371' => 'nnu', 'Nn3g16786' => 'nnu', 'Nn4g22232' => 'nnu', 'Oeu005144.1' => 'oeu', 'Oeu005145.1' => 'oeu', 'Oeu011348.1' => 'oeu', 'Oeu016415.1' => 'oeu', 'Oeu023501.1' => 'oeu', 'Oeu044473.1' => 'oeu', 'Oeu048892.2' => 'oeu', 'Os01g0549200' => 'osa', 'Os02g0469300' => 'osa', 'Os04g0311100' => 'osa', 'Os06g0474900' => 'osa', 'Os10g0181700' => 'osa', 'Os11g0454800' => 'osa', 'Peaxi162Scf00037g00714' => 'pax', 'Peaxi162Scf00084g01217' => 'pax', 'Peaxi162Scf00257g00217' => 'pax', 'Peaxi162Scf00516g00215' => 'pax', 'Peaxi162Scf00689g00123' => 'pax', 'PGR044G2719' => 'pgr', 'PGR083G1360' => 'pgr', 'PGR102G2849' => 'pgr', 'PGR119G2534' => 'pgr', 'PGSC0003DMG400003538' => 'stu', 'PGSC0003DMG400028138' => 'stu', 'PGSC0003DMG400031732' => 'stu', 'PGSC0003DMG400038165' => 'stu', 'Phvul.002G284600' => 'pvu', 'Phvul.003G258200' => 'pvu', 'Phvul.009G176500' => 'pvu', 'Potri.003G167201' => 'ptr', 'Potri.005G118400' => 'ptr', 'Potri.012G089000' => 'ptr', 'Potri.012G102800' => 'ptr', 'Potri.015G079400' => 'ptr', 'Potri.015G100900' => 'ptr', 'Pp3c14_9810' => 'ppa', 'Pp3c15_10450' => 'ppa', 'Pp3c20_19150' => 'ppa', 'Pp3c23_12740' => 'ppa', 'Pp3c23_6310' => 'ppa', 'Pp3c24_3720' => 'ppa', 'Pp3c27_2580' => 'ppa', 'Pp3c9_8990' => 'ppa', 'PRCOL_00002854' => 'pco', 'Prupe.1G221200' => 'ppe', 'Prupe.3G289000' => 'ppe', 'Prupe.5G147000' => 'ppe', 'Prupe.6G157300' => 'ppe', 'Prupe.7G163400' => 'ppe', 'Psat0s2177g0040' => 'psa', 'Psat3g174760' => 'psa', 'Psat3g192160' => 'psa', 'Psat4g058520' => 'psa', 'Psat4g096840' => 'psa', 'Psat7g037320' => 'psa', 'PSO017G1274' => 'pso', 'PSO017G5166' => 'pso', 'PSO063G4558' => 'pso', 'PSO170G4458' => 'pso', 'PSO170G5005' => 'pso', 'PSO210G6156' => 'pso', 'PSO210G6635' => 'pso', 'PSO210G7397' => 'pso', 'PSO210G7700' => 'pso', 'PSO455G0035' => 'pso', 'PSO455G0180' => 'pso', 'PSO478G4515' => 'pso', 'PSO832G1305' => 'pso', 'PSO832G3489' => 'pso', 'QL02p075247' => 'qlo', 'QL03p051148' => 'qlo', 'QL05p010313' => 'qlo', 'QL06p034627' => 'qlo', 'QL10p001889' => 'qlo', 'QL10p010846' => 'qlo', 'RcHm_v2.0_Chr1g0350621' => 'rch', 'RcHm_v2.0_Chr1g0350641' => 'rch', 'RcHm_v2.0_Chr2g0092891' => 'rch', 'RcHm_v2.0_Chr2g0100251' => 'rch', 'RcHm_v2.0_Chr2g0158661' => 'rch', 'RcHm_v2.0_Chr2g0172741' => 'rch', 'RcHm_v2.0_Chr4g0429571' => 'rch', 'RcHm_v2.0_Chr5g0042471' => 'rch', 'RcHm_v2.0_Chr7g0189451' => 'rch', 'Rhsim08G0052000' => 'rsi', 'Rhsim08G0174400' => 'rsi', 'Rhsim08G0193200' => 'rsi', 'Rhsim10G0214800' => 'rsi', 'Rhsim10G0214900' => 'rsi', 'Rhsim10G0215000' => 'rsi', 'Rhsim12G0022900' => 'rsi', 'Rhsim12G0177500' => 'rsi', 'Rhsim12G0177700' => 'rsi', 'Sabra03G0122600' => 'sbr', 'Sabra05G0097400' => 'sbr', 'Sabra12G0064100' => 'sbr', 'Sabra15G0121300' => 'sbr', 'SalBow2G0642' => 'sbo', 'SalBow5G2667' => 'sbo', 'SalBow5G4873' => 'sbo', 'SalBow8G2395' => 'sbo', 'Sc03g0003290' => 'sci', 'Sc10g0010130' => 'sci', 'Sc22g0003650' => 'sci', 'Sed0001603' => 'sed', 'Sed0004259' => 'sed', 'Sed0006789' => 'sed', 'Sed0011838' => 'sed', 'Sed0012964' => 'sed', 'Sed0016383' => 'sed', 'Sed0019010' => 'sed', 'Sed0020188' => 'sed', 'SEGI_04702' => 'sgi', 'SEGI_17231' => 'sgi', 'SEGI_18877' => 'sgi', 'SEGI_25196' => 'sgi', 'SEGI_25515' => 'sgi', 'SEGI_28445' => 'sgi', 'SEGI_37452' => 'sgi', 'SGA_v2.0_scaffold188G40336' => 'sas', 'SGA_v2.0_scaffold228G43247' => 'sas', 'SGA_v2.0_scaffold280G46853' => 'sas', 'SGA_v2.0_scaffold34G13808' => 'sas', 'SGA_v2.0_scaffold40G15576' => 'sas', 'SGA_v2.0_scaffold611G53188' => 'sas', 'SGA_v2.0_scaffold78G25461' => 'sas', 'SGA_v2.0_scaffold90G27888' => 'sas', 'SHI08601' => 'shi', 'SHI08606' => 'shi', 'SHI17117' => 'shi', 'SHI17119' => 'shi', 'SMO118G0201' => 'smo', 'SMO169G0247' => 'smo', 'SMO176G0006' => 'smo', 'SMO176G0015' => 'smo', 'SMO202G0006' => 'smo', 'SMO240G0050' => 'smo', 'SMO286G0009' => 'smo', 'SMO338G0033' => 'smo', 'SMO356G0533' => 'smo', 'SMO364G0382' => 'smo', 'SMO367G0166' => 'smo', 'SMO367G1098' => 'smo', 'Solyc01g009920.3' => 'sly', 'Solyc01g099300.3' => 'sly', 'Solyc02g084700.3' => 'sly', 'Solyc03g097520.3' => 'sly', 'Solyc06g071580.3' => 'sly', 'Solyc10g081760.3' => 'sly', 'Sopen01g005480' => 'spe', 'Sopen01g042850' => 'spe', 'Sopen02g029370' => 'spe', 'Sopen03g028280' => 'spe', 'Sopen06g027870' => 'spe', 'Sopen10g032270' => 'spe', 'Sp5g18180' => 'spa', 'Sp6g12880' => 'spa', 'Sp6g30850' => 'spa', 'Sp7g22960' => 'spa', 'Sp7g34010' => 'spa', 'SpUn1326_0010' => 'spa', 'TAR371G0242' => 'tar', 'TAR622G0638' => 'tar', 'TAR628G1548' => 'tar', 'TAR629G1079' => 'tar', 'TAR629G3413' => 'tar', 'THA.LOC104804249' => 'tha', 'THA.LOC104808315' => 'tha', 'THA.LOC104809238' => 'tha', 'THA.LOC104825484' => 'tha', 'Thecc.01G025500' => 'tca', 'Thecc.03G015800' => 'tca', 'Thecc.03G018000' => 'tca', 'Thecc.03G134800' => 'tca', 'Thecc.04G014700' => 'tca', 'Thhalv10006991m.g' => 'esa', 'Thhalv10012707m.g' => 'esa', 'Thhalv10015739m.g' => 'esa', 'Thhalv10024553m.g' => 'esa', 'Thhalv10024673m.g' => 'esa', 'Thhalv10029187m.g' => 'esa', 'TPR.G12971' => 'tpr', 'TPR.G29396' => 'tpr', 'TPR.G33376' => 'tpr', 'TPR.G35508' => 'tpr', 'TPR.G35516' => 'tpr', 'TPR.G37317' => 'tpr', 'TPR.G37389' => 'tpr', 'TPR.G37523' => 'tpr', 'TPR.G559' => 'tpr', 'TWI14G0070' => 'twi', 'TWI14G0729' => 'twi', 'TWI18G0596' => 'twi', 'TWI39G0780' => 'twi', 'TWI39G0850' => 'twi', 'TWI73G1052' => 'twi', 'unitig_52.g17485' => 'ugi', 'unitig_61.g26355' => 'ugi', 'vmacro01040' => 'vma', 'vmacro16731' => 'vma', 'vmacro18270' => 'vma', 'vmacro19142' => 'vma', 'vmacro19407' => 'vma', 'vmacro19408' => 'vma', 'vmacro21899' => 'vma', 'vmacro21900' => 'vma', 'vmacro21901' => 'vma', 'VMungo0251G0490' => 'vmu', 'VMungo0251G1748' => 'vmu', 'VMungo1309G0421' => 'vmu', 'Zm00001eb086500' => 'zma', 'Zm00001eb150680' => 'zma', 'Zm00001eb162330' => 'zma', 'Zm00001eb203130' => 'zma', 'Zm00001eb369480' => 'zma', 'Zm00001eb382340' => 'zma', 'Zm00001eb416360' => 'zma' ), 'gf_id' => 'HOM05D000902', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000902' ), 'data_identifier' => 'HOM05D000902', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000902', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '663', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02470' => 'bna', 'A01p16260' => 'bna', 'A02p01680' => 'bna', 'A03p16600' => 'bna', 'A03p55660' => 'bna', 'A03p64160' => 'bna', 'A03p64170' => 'bna', 'A08p31900' => 'bna', 'A09p59530' => 'bna', 'A10p08230' => 'bna', 'A10p25090' => 'bna', 'Aa31LG3G7100' => 'aar', 'Aa31LG3G7110' => 'aar', 'Aa31LG6G13160' => 'aar', 'Aa31LG7G10770' => 'aar', 'Aa31LG7G3830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2723' => 'aag', 'Actinidia08045' => 'ach', 'Actinidia08888' => 'ach', 'Actinidia18333' => 'ach', 'Actinidia19334' => 'ach', 'Actinidia25552' => 'ach', 'Actinidia26089' => 'ach', 'Actinidia30615' => 'ach', 'Actinidia30616' => 'ach', 'Actinidia33083' => 'ach', 'Actinidia35762' => 'ach', 'Ah.02g110620' => 'amhyb', 'Ah.11g046390' => 'amhyb', 'AL1G31670' => 'aly', 'AL6G23730' => 'aly', 'AL7G14740' => 'aly', 'AL7G14750' => 'aly', 'AL7G14760' => 'aly', 'AL7G28220' => 'aly', 'AL8G24940' => 'aly', 'Aqoxy3G01665' => 'aox', 'Aqoxy3G02853' => 'aox', 'Aqoxy5G01513' => 'aox', 'Aqoxy5G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8SKA4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ75LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKDA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0LJZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7REX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZP4YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWX7I5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2QKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS0L9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPCD8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q161UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC7XCF' => 'arhy', 'AT1G19100' => 'ath', 'AT4G24970' => 'ath', 'AT4G36270' => 'ath', 'AT4G36280' => 'ath', 'AT4G36290' => 'ath', 'AT5G13130' => 'ath', 'AT5G50780' => 'ath', 'ATR0582G266' => 'atr', 'ATR0661G195' => 'atr', 'ATR1152G031' => 'atr', 'Atru.chr11.2382' => 'acertr', 'Atru.chr12.2337' => 'acertr', 'Atru.chr3.744' => 'acertr', 'Atru.chr6.1870' => 'acertr', 'Atru.chr9.2515' => 'acertr', 'AUR62004120' => 'cqu', 'AUR62005667' => 'cqu', 'AUR62007634' => 'cqu', 'AUR62008186' => 'cqu', 'AUR62008187' => 'cqu', 'AUR62008188' => 'cqu', 'AUR62027954' => 'cqu', 'AUR62028766' => 'cqu', 'AUR62028767' => 'cqu', 'AUR62028768' => 'cqu', 'AUR62028886' => 'cqu', 'AUR62029563' => 'cqu', 'AUR62038832' => 'cqu', 'BcaB01g04149' => 'bca', 'BcaB03g12940' => 'bca', 'BcaB03g13090' => 'bca', 'BcaB03g14466' => 'bca', 'BcaB05g24035' => 'bca', 'BcaC01g06050' => 'bca', 'BcaC04g19148' => 'bca', 'BcaC04g20761' => 'bca', 'BcaC06g32845' => 'bca', 'BcaC07g41274' => 'bca', 'BcaC09g50827' => 'bca', 'BcaNung00741' => 'bca', 'BcaNung00742' => 'bca', 'BcaNung01859' => 'bca', 'BcaNung03985' => 'bca', 'BcaNung03989' => 'bca', 'BcaNung05661' => 'bca', 'BolC1t00257H' => 'bol', 'BolC1t01956H' => 'bol', 'BolC2t06534H' => 'bol', 'BolC3t14334H' => 'bol', 'BolC5t30451H' => 'bol', 'BolC7t45880H' => 'bol', 'BolC7t46586H' => 'bol', 'BolC8t49301H' => 'bol', 'BolC8t51837H' => 'bol', 'BolC9t56822H' => 'bol', 'BolC9t59235H' => 'bol', 'BraA01t00234Z' => 'bra', 'BraA01t01563Z' => 'bra', 'BraA02t05147Z' => 'bra', 'BraA03t10947Z' => 'bra', 'BraA03t14633Z' => 'bra', 'BraA08t35112Z' => 'bra', 'BraA09t41330Z' => 'bra', 'BraA10t44570Z' => 'bra', 'C01p02670' => 'bna', 'C01p20260' => 'bna', 'C02p05890' => 'bna', 'C03p19530' => 'bna', 'C05p17470' => 'bna', 'C07p53900' => 'bna', 'C07p61630' => 'bna', 'C08p16800' => 'bna', 'C08p42810' => 'bna', 'C09p39480' => 'bna', 'C09p63980' => 'bna', 'CAN.G1001.7' => 'can', 'CAN.G1034.55' => 'can', 'CAN.G143.7' => 'can', 'CAN.G3340.1' => 'can', 'CAN.G358.19' => 'can', 'CAN.G373.2' => 'can', 'CAN.G674.16' => 'can', 'CAN.G674.17' => 'can', 'CAN.G674.18' => 'can', 'CAN.G732.2' => 'can', 'CAN.G732.3' => 'can', 'CAN.G993.39' => 'can', 'CANSAT01G2052' => 'cansat', 'CANSAT80G0070' => 'cansat', 'CANSAT80G0483' => 'cansat', 'CANSAT80G0625' => 'cansat', 'CARHR019690' => 'chi', 'CARHR080280' => 'chi', 'CARHR152750' => 'chi', 'CARHR152760' => 'chi', 'CARHR152770' => 'chi', 'CARHR200340' => 'chi', 'CARHR232370' => 'chi', 'CARHR244670' => 'chi', 'CARHR244680' => 'chi', 'CARHR257520' => 'chi', 'Carub.0001s1872' => 'cru', 'Carub.0006s1130' => 'cru', 'Carub.0007s0396' => 'cru', 'Carub.0007s0397' => 'cru', 'Carub.0007s1608' => 'cru', 'Carub.0008s1068' => 'cru', 'Carub.0008s1077' => 'cru', 'Ca_16158_v3' => 'car', 'Ca_17571_v3' => 'car', 'Ca_21936_v3' => 'car', 'Ca_22350_v3' => 'car', 'CBR_g22445' => 'cbr', 'CBR_g26290' => 'cbr', 'Cc04_g09610' => 'ccan', 'Cc04_g12280' => 'ccan', 'Cc07_g10230' => 'ccan', 'CDE02G0093' => 'cde', 'CDE02G0701' => 'cde', 'CDE04G1050' => 'cde', 'CDE05G1833' => 'cde', 'CDE05G3058' => 'cde', 'CDE05G3380' => 'cde', 'CDE06G0536' => 'cde', 'Cfa006923' => 'cfa', 'Cfa009402' => 'cfa', 'Cfa018751' => 'cfa', 'Cfa019164' => 'cfa', 'Cfa022935' => 'cfa', 'Ciclev10019081m.g' => 'ccl', 'Ciclev10025076m.g' => 'ccl', 'Ciclev10030712m.g' => 'ccl', 'Ciclev10033760m.g' => 'ccl', 'CiPaw.05G105600' => 'cil', 'CiPaw.08G136700' => 'cil', 'CiPaw.11G003900' => 'cil', 'CiPaw.11G023700' => 'cil', 'CiPaw.12G003700' => 'cil', 'ClCG06G017100' => 'cla', 'ClCG06G018110' => 'cla', 'ClCG07G008800' => 'cla', 'ClCG07G015330' => 'cla', 'COL.COLO4_13698' => 'col', 'COL.COLO4_16659' => 'col', 'COL.COLO4_21986' => 'col', 'COL.COLO4_24049' => 'col', 'COL.COLO4_29061' => 'col', 'COL.COLO4_29075' => 'col', 'COL.COLO4_30094' => 'col', 'Cpa.g.c33689' => 'cpa', 'Cpa.g.sc108.39' => 'cpa', 'Cpa.g.sc108.41' => 'cpa', 'Cpa.g.sc1163.1' => 'cpa', 'Cpa.g.sc4.155' => 'cpa', 'Cpa.g.sc6.194' => 'cpa', 'CsaV3_1G000340' => 'csa', 'CsaV3_1G001400' => 'csa', 'CsaV3_4G002220' => 'csa', 'CsaV3_4G005370' => 'csa', 'CSS0007487' => 'camsi', 'CSS0008066' => 'camsi', 'CSS0009120' => 'camsi', 'CSS0015512' => 'camsi', 'CSS0022409' => 'camsi', 'CSS0025358' => 'camsi', 'CSS0044547' => 'camsi', 'DCAR_013057' => 'dca', 'DCAR_015058' => 'dca', 'DCAR_016027' => 'dca', 'DCAR_017327' => 'dca', 'DCAR_020743' => 'dca', 'DCAR_026157' => 'dca', 'DCAR_032339' => 'dca', 'DCAR_032340' => 'dca', 'Dinv11200' => 'din', 'Dinv11201' => 'din', 'Dinv20631' => 'din', 'Dinv23182' => 'din', 'Dinv33466' => 'din', 'Dinv33583' => 'din', 'Dinv38565' => 'din', 'Duzib068G0200' => 'dzi', 'Duzib147G0132' => 'dzi', 'Duzib147G0635' => 'dzi', 'Duzib205G1670' => 'dzi', 'Duzib251G0606' => 'dzi', 'ECA232G3336' => 'eca', 'ECA232G3763' => 'eca', 'ECA232G4845' => 'eca', 'ECA234G1607' => 'eca', 'ECA246G0932' => 'eca', 'ECA247G0781' => 'eca', 'ECA247G1932' => 'eca', 'ECA247G2079' => 'eca', 'ECA247G3338' => 'eca', 'ECA247G4115' => 'eca', 'EL10Ac3g06552' => 'bvu', 'EL10Ac5g10721' => 'bvu', 'EL10Ac5g10722' => 'bvu', 'EL10Ac5g10723' => 'bvu', 'EL10Ac5g11361' => 'bvu', 'EL10Ac6g13553' => 'bvu', 'EL10As8g23872' => 'bvu', 'Eucgr.B00250' => 'egr', 'Eucgr.B00251' => 'egr', 'Eucgr.B03533' => 'egr', 'Eucgr.I02381' => 'egr', 'Eucgr.K02700' => 'egr', 'FAN02G0174' => 'fan', 'FAN02G3146' => 'fan', 'FAN04G1672' => 'fan', 'FAN04G2273' => 'fan', 'FAN05G2791' => 'fan', 'FAN05G4035' => 'fan', 'FAN07G0834' => 'fan', 'FAN08G1198' => 'fan', 'FAN09G4182' => 'fan', 'FAN12G0496' => 'fan', 'FAN13G1027' => 'fan', 'FAN13G2951' => 'fan', 'FAN14G0705' => 'fan', 'FAN14G0720' => 'fan', 'FAN17G0201' => 'fan', 'FAN17G2665' => 'fan', 'FAN18G1456' => 'fan', 'FAN18G1525' => 'fan', 'FAN18G3500' => 'fan', 'FAN28G2670' => 'fan', 'FvH4_1g12391' => 'fve', 'FvH4_4g23220' => 'fve', 'FvH4_5g08810' => 'fve', 'FvH4_5g28960' => 'fve', 'FvH4_6g42820' => 'fve', 'FvH4_6g51110' => 'fve', 'Glyma.02G051802' => 'gma', 'Glyma.04G185300' => 'gma', 'Glyma.05G202900' => 'gma', 'Glyma.08G010300' => 'gma', 'Glyma.16G131900' => 'gma', 'Glyma.17G087900' => 'gma', 'Gohir.A07G048600' => 'ghi', 'Gohir.A11G179000' => 'ghi', 'Gohir.A12G140900' => 'ghi', 'Gohir.A12G140950' => 'ghi', 'Gohir.A12G191700' => 'ghi', 'Gohir.A13G086300' => 'ghi', 'Gohir.D07G052900' => 'ghi', 'Gohir.D11G186600' => 'ghi', 'Gohir.D12G145575' => 'ghi', 'Gohir.D12G145650' => 'ghi', 'Gohir.D12G145725' => 'ghi', 'Gohir.D12G194050' => 'ghi', 'Gohir.D13G091800' => 'ghi', 'Gorai.001G055900' => 'gra', 'Gorai.007G198400' => 'gra', 'Gorai.008G157000' => 'gra', 'Gorai.008G157100' => 'gra', 'Gorai.008G208700' => 'gra', 'Gorai.010G138700' => 'gra', 'GSVIVG01000977001' => 'vvi', 'GSVIVG01007708001' => 'vvi', 'GSVIVG01008587001' => 'vvi', 'GSVIVG01018849001' => 'vvi', 'GSVIVG01032432001' => 'vvi', 'HanXRQChr02g0034131' => 'han', 'HanXRQChr02g0035981' => 'han', 'HanXRQChr02g0035991' => 'han', 'HanXRQChr05g0155611' => 'han', 'HanXRQChr05g0155621' => 'han', 'HanXRQChr08g0236501' => 'han', 'HanXRQChr09g0261321' => 'han', 'HanXRQChr09g0272081' => 'han', 'HanXRQChr10g0310741' => 'han', 'HanXRQChr11g0325591' => 'han', 'HanXRQChr12g0385691' => 'han', 'HanXRQChr13g0387801' => 'han', 'HanXRQChr15g0463011' => 'han', 'Haze_03826' => 'cav', 'Haze_03827' => 'cav', 'Haze_07183' => 'cav', 'Haze_07537' => 'cav', 'Haze_07539' => 'cav', 'Haze_12461' => 'cav', 'Haze_16115' => 'cav', 'Haze_16808' => 'cav', 'Haze_18531' => 'cav', 'Hma1.2p1_0046F.1_g026700' => 'hma', 'Hma1.2p1_0046F.1_g026710' => 'hma', 'Hma1.2p1_0168F.1_g074340' => 'hma', 'Hma1.2p1_0266F.1_g107030' => 'hma', 'Hma1.2p1_0266F.1_g107060' => 'hma', 'Hma1.2p1_0275F.1_g110510' => 'hma', 'Hma1.2p1_0592F.1_g185490' => 'hma', 'Hma1.2p1_0592F.1_g185500' => 'hma', 'Hma1.2p1_0592F.1_g185510' => 'hma', 'Hma1.2p1_0592F.1_g185520' => 'hma', 'Hma1.2p1_0592F.1_g185530' => 'hma', 'Hma1.2p1_0818F.1_g223450' => 'hma', 'HPP92_009708' => 'vpl', 'HPP92_009793' => 'vpl', 'HPP92_009796' => 'vpl', 'HPP92_009797' => 'vpl', 'HPP92_014940' => 'vpl', 'HPP92_014988' => 'vpl', 'Hund02463' => 'sun', 'Hund02760' => 'sun', 'Hund05071' => 'sun', 'Hund10108' => 'sun', 'Hund11204' => 'sun', 'Hund14016' => 'sun', 'Hund16464' => 'sun', 'Lalb_Chr09g0333391' => 'lal', 'Lalb_Chr11g0070461' => 'lal', 'Lalb_Chr12g0201671' => 'lal', 'Lalb_Chr13g0297161' => 'lal', 'Lj1g0002823' => 'lja', 'Lj3C1074T6' => 'lonja', 'Lj4A212T28' => 'lonja', 'Lj4g0005516' => 'lja', 'Lj4g0013705' => 'lja', 'Lj4g0027865' => 'lja', 'Lj5C92G16' => 'lonja', 'Lj5C92T12' => 'lonja', 'Lj7C596T3' => 'lonja', 'Lj9A446G59' => 'lonja', 'Lj9A482G21' => 'lonja', 'Lsat_1_v5_gn_1_28261' => 'lsa', 'Lsat_1_v5_gn_1_28281' => 'lsa', 'Lsat_1_v5_gn_1_32721' => 'lsa', 'Lsat_1_v5_gn_4_151760' => 'lsa', 'Lsat_1_v5_gn_4_2120' => 'lsa', 'Lsat_1_v5_gn_4_75761' => 'lsa', 'Lsat_1_v5_gn_5_10920' => 'lsa', 'Manes.02G099900' => 'mes', 'Manes.11G096200' => 'mes', 'Manes.12G007200' => 'mes', 'Manes.14G048300' => 'mes', 'Manes.17G114700' => 'mes', 'Mapoly0002s0070' => 'mpo', 'Mapoly0029s0099' => 'mpo', 'MBI07_g24742_MAGBIO' => 'mbi', 'MBI10_g27988_MAGBIO' => 'mbi', 'MBI11_g13057_MAGBIO' => 'mbi', 'MD02G1137200' => 'mdo', 'MD06G1137200' => 'mdo', 'MD07G1122300' => 'mdo', 'MD09G1078200' => 'mdo', 'MD13G1123700' => 'mdo', 'MD14G1151900' => 'mdo', 'MD17G1030900' => 'mdo', 'MD17G1068200' => 'mdo', 'MD17G1068600' => 'mdo', 'Medtr3g077540' => 'mtr', 'Medtr4g105530' => 'mtr', 'Medtr8g076580' => 'mtr', 'Medtr8g076590' => 'mtr', 'Medtr8g096410' => 'mtr', 'MELO3C016411.2' => 'cme', 'MELO3C017780.2' => 'cme', 'MELO3C022560.2' => 'cme', 'MELO3C026187.2' => 'cme', 'MELO3C026286.2' => 'cme', 'MELO3C032854.2' => 'cme', 'Migut.H02495' => 'egut', 'Migut.I00561' => 'egut', 'Migut.K01015' => 'egut', 'Migut.K01016' => 'egut', 'Migut.L00743' => 'egut', 'Migut.L00744' => 'egut', 'Migut.L00746' => 'egut', 'Migut.L00798' => 'egut', 'Migut.L00799' => 'egut', 'Migut.N02096' => 'egut', 'MSTRG.11259' => 'ama', 'MSTRG.23142' => 'ama', 'MSTRG.2499' => 'ama', 'Nitab4.5_0000003g0730' => 'nta', 'Nitab4.5_0000137g0020' => 'nta', 'Nitab4.5_0000721g0210' => 'nta', 'Nitab4.5_0000723g0050' => 'nta', 'Nitab4.5_0000913g0070' => 'nta', 'Nitab4.5_0001332g0040' => 'nta', 'Nitab4.5_0001771g0050' => 'nta', 'Nitab4.5_0001918g0050' => 'nta', 'Nitab4.5_0002686g0030' => 'nta', 'Nitab4.5_0003156g0020' => 'nta', 'Nitab4.5_0003383g0040' => 'nta', 'Nitab4.5_0003918g0010' => 'nta', 'Nitab4.5_0006760g0010' => 'nta', 'Nn1g05981' => 'nnu', 'Nn1g06288' => 'nnu', 'Nn3g16371' => 'nnu', 'Nn3g16786' => 'nnu', 'Nn4g22232' => 'nnu', 'Oeu005144.1' => 'oeu', 'Oeu005145.1' => 'oeu', 'Oeu011348.1' => 'oeu', 'Oeu016415.1' => 'oeu', 'Oeu023501.1' => 'oeu', 'Oeu044473.1' => 'oeu', 'Oeu048892.2' => 'oeu', 'Os01g0549200' => 'osa', 'Os02g0469300' => 'osa', 'Os04g0311100' => 'osa', 'Os06g0474900' => 'osa', 'Os10g0181700' => 'osa', 'Os11g0454800' => 'osa', 'Peaxi162Scf00037g00714' => 'pax', 'Peaxi162Scf00084g01217' => 'pax', 'Peaxi162Scf00257g00217' => 'pax', 'Peaxi162Scf00516g00215' => 'pax', 'Peaxi162Scf00689g00123' => 'pax', 'PGR044G2719' => 'pgr', 'PGR083G1360' => 'pgr', 'PGR102G2849' => 'pgr', 'PGR119G2534' => 'pgr', 'PGSC0003DMG400003538' => 'stu', 'PGSC0003DMG400028138' => 'stu', 'PGSC0003DMG400031732' => 'stu', 'PGSC0003DMG400038165' => 'stu', 'Phvul.002G284600' => 'pvu', 'Phvul.003G258200' => 'pvu', 'Phvul.009G176500' => 'pvu', 'Potri.003G167201' => 'ptr', 'Potri.005G118400' => 'ptr', 'Potri.012G089000' => 'ptr', 'Potri.012G102800' => 'ptr', 'Potri.015G079400' => 'ptr', 'Potri.015G100900' => 'ptr', 'Pp3c14_9810' => 'ppa', 'Pp3c15_10450' => 'ppa', 'Pp3c20_19150' => 'ppa', 'Pp3c23_12740' => 'ppa', 'Pp3c23_6310' => 'ppa', 'Pp3c24_3720' => 'ppa', 'Pp3c27_2580' => 'ppa', 'Pp3c9_8990' => 'ppa', 'PRCOL_00002854' => 'pco', 'Prupe.1G221200' => 'ppe', 'Prupe.3G289000' => 'ppe', 'Prupe.5G147000' => 'ppe', 'Prupe.6G157300' => 'ppe', 'Prupe.7G163400' => 'ppe', 'Psat0s2177g0040' => 'psa', 'Psat3g174760' => 'psa', 'Psat3g192160' => 'psa', 'Psat4g058520' => 'psa', 'Psat4g096840' => 'psa', 'Psat7g037320' => 'psa', 'PSO017G1274' => 'pso', 'PSO017G5166' => 'pso', 'PSO063G4558' => 'pso', 'PSO170G4458' => 'pso', 'PSO170G5005' => 'pso', 'PSO210G6156' => 'pso', 'PSO210G6635' => 'pso', 'PSO210G7397' => 'pso', 'PSO210G7700' => 'pso', 'PSO455G0035' => 'pso', 'PSO455G0180' => 'pso', 'PSO478G4515' => 'pso', 'PSO832G1305' => 'pso', 'PSO832G3489' => 'pso', 'QL02p075247' => 'qlo', 'QL03p051148' => 'qlo', 'QL05p010313' => 'qlo', 'QL06p034627' => 'qlo', 'QL10p001889' => 'qlo', 'QL10p010846' => 'qlo', 'RcHm_v2.0_Chr1g0350621' => 'rch', 'RcHm_v2.0_Chr1g0350641' => 'rch', 'RcHm_v2.0_Chr2g0092891' => 'rch', 'RcHm_v2.0_Chr2g0100251' => 'rch', 'RcHm_v2.0_Chr2g0158661' => 'rch', 'RcHm_v2.0_Chr2g0172741' => 'rch', 'RcHm_v2.0_Chr4g0429571' => 'rch', 'RcHm_v2.0_Chr5g0042471' => 'rch', 'RcHm_v2.0_Chr7g0189451' => 'rch', 'Rhsim08G0052000' => 'rsi', 'Rhsim08G0174400' => 'rsi', 'Rhsim08G0193200' => 'rsi', 'Rhsim10G0214800' => 'rsi', 'Rhsim10G0214900' => 'rsi', 'Rhsim10G0215000' => 'rsi', 'Rhsim12G0022900' => 'rsi', 'Rhsim12G0177500' => 'rsi', 'Rhsim12G0177700' => 'rsi', 'Sabra03G0122600' => 'sbr', 'Sabra05G0097400' => 'sbr', 'Sabra12G0064100' => 'sbr', 'Sabra15G0121300' => 'sbr', 'SalBow2G0642' => 'sbo', 'SalBow5G2667' => 'sbo', 'SalBow5G4873' => 'sbo', 'SalBow8G2395' => 'sbo', 'Sc03g0003290' => 'sci', 'Sc10g0010130' => 'sci', 'Sc22g0003650' => 'sci', 'Sed0001603' => 'sed', 'Sed0004259' => 'sed', 'Sed0006789' => 'sed', 'Sed0011838' => 'sed', 'Sed0012964' => 'sed', 'Sed0016383' => 'sed', 'Sed0019010' => 'sed', 'Sed0020188' => 'sed', 'SEGI_04702' => 'sgi', 'SEGI_17231' => 'sgi', 'SEGI_18877' => 'sgi', 'SEGI_25196' => 'sgi', 'SEGI_25515' => 'sgi', 'SEGI_28445' => 'sgi', 'SEGI_37452' => 'sgi', 'SGA_v2.0_scaffold188G40336' => 'sas', 'SGA_v2.0_scaffold228G43247' => 'sas', 'SGA_v2.0_scaffold280G46853' => 'sas', 'SGA_v2.0_scaffold34G13808' => 'sas', 'SGA_v2.0_scaffold40G15576' => 'sas', 'SGA_v2.0_scaffold611G53188' => 'sas', 'SGA_v2.0_scaffold78G25461' => 'sas', 'SGA_v2.0_scaffold90G27888' => 'sas', 'SHI08601' => 'shi', 'SHI08606' => 'shi', 'SHI17117' => 'shi', 'SHI17119' => 'shi', 'SMO118G0201' => 'smo', 'SMO169G0247' => 'smo', 'SMO176G0006' => 'smo', 'SMO176G0015' => 'smo', 'SMO202G0006' => 'smo', 'SMO240G0050' => 'smo', 'SMO286G0009' => 'smo', 'SMO338G0033' => 'smo', 'SMO356G0533' => 'smo', 'SMO364G0382' => 'smo', 'SMO367G0166' => 'smo', 'SMO367G1098' => 'smo', 'Solyc01g009920.3' => 'sly', 'Solyc01g099300.3' => 'sly', 'Solyc02g084700.3' => 'sly', 'Solyc03g097520.3' => 'sly', 'Solyc06g071580.3' => 'sly', 'Solyc10g081760.3' => 'sly', 'Sopen01g005480' => 'spe', 'Sopen01g042850' => 'spe', 'Sopen02g029370' => 'spe', 'Sopen03g028280' => 'spe', 'Sopen06g027870' => 'spe', 'Sopen10g032270' => 'spe', 'Sp5g18180' => 'spa', 'Sp6g12880' => 'spa', 'Sp6g30850' => 'spa', 'Sp7g22960' => 'spa', 'Sp7g34010' => 'spa', 'SpUn1326_0010' => 'spa', 'TAR371G0242' => 'tar', 'TAR622G0638' => 'tar', 'TAR628G1548' => 'tar', 'TAR629G1079' => 'tar', 'TAR629G3413' => 'tar', 'THA.LOC104804249' => 'tha', 'THA.LOC104808315' => 'tha', 'THA.LOC104809238' => 'tha', 'THA.LOC104825484' => 'tha', 'Thecc.01G025500' => 'tca', 'Thecc.03G015800' => 'tca', 'Thecc.03G018000' => 'tca', 'Thecc.03G134800' => 'tca', 'Thecc.04G014700' => 'tca', 'Thhalv10006991m.g' => 'esa', 'Thhalv10012707m.g' => 'esa', 'Thhalv10015739m.g' => 'esa', 'Thhalv10024553m.g' => 'esa', 'Thhalv10024673m.g' => 'esa', 'Thhalv10029187m.g' => 'esa', 'TPR.G12971' => 'tpr', 'TPR.G29396' => 'tpr', 'TPR.G33376' => 'tpr', 'TPR.G35508' => 'tpr', 'TPR.G35516' => 'tpr', 'TPR.G37317' => 'tpr', 'TPR.G37389' => 'tpr', 'TPR.G37523' => 'tpr', 'TPR.G559' => 'tpr', 'TWI14G0070' => 'twi', 'TWI14G0729' => 'twi', 'TWI18G0596' => 'twi', 'TWI39G0780' => 'twi', 'TWI39G0850' => 'twi', 'TWI73G1052' => 'twi', 'unitig_52.g17485' => 'ugi', 'unitig_61.g26355' => 'ugi', 'vmacro01040' => 'vma', 'vmacro16731' => 'vma', 'vmacro18270' => 'vma', 'vmacro19142' => 'vma', 'vmacro19407' => 'vma', 'vmacro19408' => 'vma', 'vmacro21899' => 'vma', 'vmacro21900' => 'vma', 'vmacro21901' => 'vma', 'VMungo0251G0490' => 'vmu', 'VMungo0251G1748' => 'vmu', 'VMungo1309G0421' => 'vmu', 'Zm00001eb086500' => 'zma', 'Zm00001eb150680' => 'zma', 'Zm00001eb162330' => 'zma', 'Zm00001eb203130' => 'zma', 'Zm00001eb369480' => 'zma', 'Zm00001eb382340' => 'zma', 'Zm00001eb416360' => 'zma' ) $gf_id = 'HOM05D000902' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000902' ) $data_identifier = 'HOM05D000902' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 13, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 10, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 6, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 9, 'hma' => (int) 12, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 4, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 6, 'ppa' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 6, 'rch' => (int) 9, 'rsi' => (int) 9, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 12, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 3, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416360' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000902', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '663', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02470' => 'bna', 'A01p16260' => 'bna', 'A02p01680' => 'bna', 'A03p16600' => 'bna', 'A03p55660' => 'bna', 'A03p64160' => 'bna', 'A03p64170' => 'bna', 'A08p31900' => 'bna', 'A09p59530' => 'bna', 'A10p08230' => 'bna', 'A10p25090' => 'bna', 'Aa31LG3G7100' => 'aar', 'Aa31LG3G7110' => 'aar', 'Aa31LG6G13160' => 'aar', 'Aa31LG7G10770' => 'aar', 'Aa31LG7G3830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2723' => 'aag', 'Actinidia08045' => 'ach', 'Actinidia08888' => 'ach', 'Actinidia18333' => 'ach', 'Actinidia19334' => 'ach', 'Actinidia25552' => 'ach', 'Actinidia26089' => 'ach', 'Actinidia30615' => 'ach', 'Actinidia30616' => 'ach', 'Actinidia33083' => 'ach', 'Actinidia35762' => 'ach', 'Ah.02g110620' => 'amhyb', 'Ah.11g046390' => 'amhyb', 'AL1G31670' => 'aly', 'AL6G23730' => 'aly', 'AL7G14740' => 'aly', 'AL7G14750' => 'aly', 'AL7G14760' => 'aly', 'AL7G28220' => 'aly', 'AL8G24940' => 'aly', 'Aqoxy3G01665' => 'aox', 'Aqoxy3G02853' => 'aox', 'Aqoxy5G01513' => 'aox', 'Aqoxy5G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8SKA4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ75LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKDA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0LJZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7REX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZP4YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWX7I5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2QKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS0L9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPCD8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q161UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC7XCF' => 'arhy', 'AT1G19100' => 'ath', 'AT4G24970' => 'ath', 'AT4G36270' => 'ath', 'AT4G36280' => 'ath', 'AT4G36290' => 'ath', 'AT5G13130' => 'ath', 'AT5G50780' => 'ath', 'ATR0582G266' => 'atr', 'ATR0661G195' => 'atr', 'ATR1152G031' => 'atr', 'Atru.chr11.2382' => 'acertr', 'Atru.chr12.2337' => 'acertr', 'Atru.chr3.744' => 'acertr', 'Atru.chr6.1870' => 'acertr', 'Atru.chr9.2515' => 'acertr', 'AUR62004120' => 'cqu', 'AUR62005667' => 'cqu', 'AUR62007634' => 'cqu', 'AUR62008186' => 'cqu', 'AUR62008187' => 'cqu', 'AUR62008188' => 'cqu', 'AUR62027954' => 'cqu', 'AUR62028766' => 'cqu', 'AUR62028767' => 'cqu', 'AUR62028768' => 'cqu', 'AUR62028886' => 'cqu', 'AUR62029563' => 'cqu', 'AUR62038832' => 'cqu', 'BcaB01g04149' => 'bca', 'BcaB03g12940' => 'bca', 'BcaB03g13090' => 'bca', 'BcaB03g14466' => 'bca', 'BcaB05g24035' => 'bca', 'BcaC01g06050' => 'bca', 'BcaC04g19148' => 'bca', 'BcaC04g20761' => 'bca', 'BcaC06g32845' => 'bca', 'BcaC07g41274' => 'bca', 'BcaC09g50827' => 'bca', 'BcaNung00741' => 'bca', 'BcaNung00742' => 'bca', 'BcaNung01859' => 'bca', 'BcaNung03985' => 'bca', 'BcaNung03989' => 'bca', 'BcaNung05661' => 'bca', 'BolC1t00257H' => 'bol', 'BolC1t01956H' => 'bol', 'BolC2t06534H' => 'bol', 'BolC3t14334H' => 'bol', 'BolC5t30451H' => 'bol', 'BolC7t45880H' => 'bol', 'BolC7t46586H' => 'bol', 'BolC8t49301H' => 'bol', 'BolC8t51837H' => 'bol', 'BolC9t56822H' => 'bol', 'BolC9t59235H' => 'bol', 'BraA01t00234Z' => 'bra', 'BraA01t01563Z' => 'bra', 'BraA02t05147Z' => 'bra', 'BraA03t10947Z' => 'bra', 'BraA03t14633Z' => 'bra', 'BraA08t35112Z' => 'bra', 'BraA09t41330Z' => 'bra', 'BraA10t44570Z' => 'bra', 'C01p02670' => 'bna', 'C01p20260' => 'bna', 'C02p05890' => 'bna', 'C03p19530' => 'bna', 'C05p17470' => 'bna', 'C07p53900' => 'bna', 'C07p61630' => 'bna', 'C08p16800' => 'bna', 'C08p42810' => 'bna', 'C09p39480' => 'bna', 'C09p63980' => 'bna', 'CAN.G1001.7' => 'can', 'CAN.G1034.55' => 'can', 'CAN.G143.7' => 'can', 'CAN.G3340.1' => 'can', 'CAN.G358.19' => 'can', 'CAN.G373.2' => 'can', 'CAN.G674.16' => 'can', 'CAN.G674.17' => 'can', 'CAN.G674.18' => 'can', 'CAN.G732.2' => 'can', 'CAN.G732.3' => 'can', 'CAN.G993.39' => 'can', 'CANSAT01G2052' => 'cansat', 'CANSAT80G0070' => 'cansat', 'CANSAT80G0483' => 'cansat', 'CANSAT80G0625' => 'cansat', 'CARHR019690' => 'chi', 'CARHR080280' => 'chi', 'CARHR152750' => 'chi', 'CARHR152760' => 'chi', 'CARHR152770' => 'chi', 'CARHR200340' => 'chi', 'CARHR232370' => 'chi', 'CARHR244670' => 'chi', 'CARHR244680' => 'chi', 'CARHR257520' => 'chi', 'Carub.0001s1872' => 'cru', 'Carub.0006s1130' => 'cru', 'Carub.0007s0396' => 'cru', 'Carub.0007s0397' => 'cru', 'Carub.0007s1608' => 'cru', 'Carub.0008s1068' => 'cru', 'Carub.0008s1077' => 'cru', 'Ca_16158_v3' => 'car', 'Ca_17571_v3' => 'car', 'Ca_21936_v3' => 'car', 'Ca_22350_v3' => 'car', 'CBR_g22445' => 'cbr', 'CBR_g26290' => 'cbr', 'Cc04_g09610' => 'ccan', 'Cc04_g12280' => 'ccan', 'Cc07_g10230' => 'ccan', 'CDE02G0093' => 'cde', 'CDE02G0701' => 'cde', 'CDE04G1050' => 'cde', 'CDE05G1833' => 'cde', 'CDE05G3058' => 'cde', 'CDE05G3380' => 'cde', 'CDE06G0536' => 'cde', 'Cfa006923' => 'cfa', 'Cfa009402' => 'cfa', 'Cfa018751' => 'cfa', 'Cfa019164' => 'cfa', 'Cfa022935' => 'cfa', 'Ciclev10019081m.g' => 'ccl', 'Ciclev10025076m.g' => 'ccl', 'Ciclev10030712m.g' => 'ccl', 'Ciclev10033760m.g' => 'ccl', 'CiPaw.05G105600' => 'cil', 'CiPaw.08G136700' => 'cil', 'CiPaw.11G003900' => 'cil', 'CiPaw.11G023700' => 'cil', 'CiPaw.12G003700' => 'cil', 'ClCG06G017100' => 'cla', 'ClCG06G018110' => 'cla', 'ClCG07G008800' => 'cla', 'ClCG07G015330' => 'cla', 'COL.COLO4_13698' => 'col', 'COL.COLO4_16659' => 'col', 'COL.COLO4_21986' => 'col', 'COL.COLO4_24049' => 'col', 'COL.COLO4_29061' => 'col', 'COL.COLO4_29075' => 'col', 'COL.COLO4_30094' => 'col', 'Cpa.g.c33689' => 'cpa', 'Cpa.g.sc108.39' => 'cpa', 'Cpa.g.sc108.41' => 'cpa', 'Cpa.g.sc1163.1' => 'cpa', 'Cpa.g.sc4.155' => 'cpa', 'Cpa.g.sc6.194' => 'cpa', 'CsaV3_1G000340' => 'csa', 'CsaV3_1G001400' => 'csa', 'CsaV3_4G002220' => 'csa', 'CsaV3_4G005370' => 'csa', 'CSS0007487' => 'camsi', 'CSS0008066' => 'camsi', 'CSS0009120' => 'camsi', 'CSS0015512' => 'camsi', 'CSS0022409' => 'camsi', 'CSS0025358' => 'camsi', 'CSS0044547' => 'camsi', 'DCAR_013057' => 'dca', 'DCAR_015058' => 'dca', 'DCAR_016027' => 'dca', 'DCAR_017327' => 'dca', 'DCAR_020743' => 'dca', 'DCAR_026157' => 'dca', 'DCAR_032339' => 'dca', 'DCAR_032340' => 'dca', 'Dinv11200' => 'din', 'Dinv11201' => 'din', 'Dinv20631' => 'din', 'Dinv23182' => 'din', 'Dinv33466' => 'din', 'Dinv33583' => 'din', 'Dinv38565' => 'din', 'Duzib068G0200' => 'dzi', 'Duzib147G0132' => 'dzi', 'Duzib147G0635' => 'dzi', 'Duzib205G1670' => 'dzi', 'Duzib251G0606' => 'dzi', 'ECA232G3336' => 'eca', 'ECA232G3763' => 'eca', 'ECA232G4845' => 'eca', 'ECA234G1607' => 'eca', 'ECA246G0932' => 'eca', 'ECA247G0781' => 'eca', 'ECA247G1932' => 'eca', 'ECA247G2079' => 'eca', 'ECA247G3338' => 'eca', 'ECA247G4115' => 'eca', 'EL10Ac3g06552' => 'bvu', 'EL10Ac5g10721' => 'bvu', 'EL10Ac5g10722' => 'bvu', 'EL10Ac5g10723' => 'bvu', 'EL10Ac5g11361' => 'bvu', 'EL10Ac6g13553' => 'bvu', 'EL10As8g23872' => 'bvu', 'Eucgr.B00250' => 'egr', 'Eucgr.B00251' => 'egr', 'Eucgr.B03533' => 'egr', 'Eucgr.I02381' => 'egr', 'Eucgr.K02700' => 'egr', 'FAN02G0174' => 'fan', 'FAN02G3146' => 'fan', 'FAN04G1672' => 'fan', 'FAN04G2273' => 'fan', 'FAN05G2791' => 'fan', 'FAN05G4035' => 'fan', 'FAN07G0834' => 'fan', 'FAN08G1198' => 'fan', 'FAN09G4182' => 'fan', 'FAN12G0496' => 'fan', 'FAN13G1027' => 'fan', 'FAN13G2951' => 'fan', 'FAN14G0705' => 'fan', 'FAN14G0720' => 'fan', 'FAN17G0201' => 'fan', 'FAN17G2665' => 'fan', 'FAN18G1456' => 'fan', 'FAN18G1525' => 'fan', 'FAN18G3500' => 'fan', 'FAN28G2670' => 'fan', 'FvH4_1g12391' => 'fve', 'FvH4_4g23220' => 'fve', 'FvH4_5g08810' => 'fve', 'FvH4_5g28960' => 'fve', 'FvH4_6g42820' => 'fve', 'FvH4_6g51110' => 'fve', 'Glyma.02G051802' => 'gma', 'Glyma.04G185300' => 'gma', 'Glyma.05G202900' => 'gma', 'Glyma.08G010300' => 'gma', 'Glyma.16G131900' => 'gma', 'Glyma.17G087900' => 'gma', 'Gohir.A07G048600' => 'ghi', 'Gohir.A11G179000' => 'ghi', 'Gohir.A12G140900' => 'ghi', 'Gohir.A12G140950' => 'ghi', 'Gohir.A12G191700' => 'ghi', 'Gohir.A13G086300' => 'ghi', 'Gohir.D07G052900' => 'ghi', 'Gohir.D11G186600' => 'ghi', 'Gohir.D12G145575' => 'ghi', 'Gohir.D12G145650' => 'ghi', 'Gohir.D12G145725' => 'ghi', 'Gohir.D12G194050' => 'ghi', 'Gohir.D13G091800' => 'ghi', 'Gorai.001G055900' => 'gra', 'Gorai.007G198400' => 'gra', 'Gorai.008G157000' => 'gra', 'Gorai.008G157100' => 'gra', 'Gorai.008G208700' => 'gra', 'Gorai.010G138700' => 'gra', 'GSVIVG01000977001' => 'vvi', 'GSVIVG01007708001' => 'vvi', 'GSVIVG01008587001' => 'vvi', 'GSVIVG01018849001' => 'vvi', 'GSVIVG01032432001' => 'vvi', 'HanXRQChr02g0034131' => 'han', 'HanXRQChr02g0035981' => 'han', 'HanXRQChr02g0035991' => 'han', 'HanXRQChr05g0155611' => 'han', 'HanXRQChr05g0155621' => 'han', 'HanXRQChr08g0236501' => 'han', 'HanXRQChr09g0261321' => 'han', 'HanXRQChr09g0272081' => 'han', 'HanXRQChr10g0310741' => 'han', 'HanXRQChr11g0325591' => 'han', 'HanXRQChr12g0385691' => 'han', 'HanXRQChr13g0387801' => 'han', 'HanXRQChr15g0463011' => 'han', 'Haze_03826' => 'cav', 'Haze_03827' => 'cav', 'Haze_07183' => 'cav', 'Haze_07537' => 'cav', 'Haze_07539' => 'cav', 'Haze_12461' => 'cav', 'Haze_16115' => 'cav', 'Haze_16808' => 'cav', 'Haze_18531' => 'cav', 'Hma1.2p1_0046F.1_g026700' => 'hma', 'Hma1.2p1_0046F.1_g026710' => 'hma', 'Hma1.2p1_0168F.1_g074340' => 'hma', 'Hma1.2p1_0266F.1_g107030' => 'hma', 'Hma1.2p1_0266F.1_g107060' => 'hma', 'Hma1.2p1_0275F.1_g110510' => 'hma', 'Hma1.2p1_0592F.1_g185490' => 'hma', 'Hma1.2p1_0592F.1_g185500' => 'hma', 'Hma1.2p1_0592F.1_g185510' => 'hma', 'Hma1.2p1_0592F.1_g185520' => 'hma', 'Hma1.2p1_0592F.1_g185530' => 'hma', 'Hma1.2p1_0818F.1_g223450' => 'hma', 'HPP92_009708' => 'vpl', 'HPP92_009793' => 'vpl', 'HPP92_009796' => 'vpl', 'HPP92_009797' => 'vpl', 'HPP92_014940' => 'vpl', 'HPP92_014988' => 'vpl', 'Hund02463' => 'sun', 'Hund02760' => 'sun', 'Hund05071' => 'sun', 'Hund10108' => 'sun', 'Hund11204' => 'sun', 'Hund14016' => 'sun', 'Hund16464' => 'sun', 'Lalb_Chr09g0333391' => 'lal', 'Lalb_Chr11g0070461' => 'lal', 'Lalb_Chr12g0201671' => 'lal', 'Lalb_Chr13g0297161' => 'lal', 'Lj1g0002823' => 'lja', 'Lj3C1074T6' => 'lonja', 'Lj4A212T28' => 'lonja', 'Lj4g0005516' => 'lja', 'Lj4g0013705' => 'lja', 'Lj4g0027865' => 'lja', 'Lj5C92G16' => 'lonja', 'Lj5C92T12' => 'lonja', 'Lj7C596T3' => 'lonja', 'Lj9A446G59' => 'lonja', 'Lj9A482G21' => 'lonja', 'Lsat_1_v5_gn_1_28261' => 'lsa', 'Lsat_1_v5_gn_1_28281' => 'lsa', 'Lsat_1_v5_gn_1_32721' => 'lsa', 'Lsat_1_v5_gn_4_151760' => 'lsa', 'Lsat_1_v5_gn_4_2120' => 'lsa', 'Lsat_1_v5_gn_4_75761' => 'lsa', 'Lsat_1_v5_gn_5_10920' => 'lsa', 'Manes.02G099900' => 'mes', 'Manes.11G096200' => 'mes', 'Manes.12G007200' => 'mes', 'Manes.14G048300' => 'mes', 'Manes.17G114700' => 'mes', 'Mapoly0002s0070' => 'mpo', 'Mapoly0029s0099' => 'mpo', 'MBI07_g24742_MAGBIO' => 'mbi', 'MBI10_g27988_MAGBIO' => 'mbi', 'MBI11_g13057_MAGBIO' => 'mbi', 'MD02G1137200' => 'mdo', 'MD06G1137200' => 'mdo', 'MD07G1122300' => 'mdo', 'MD09G1078200' => 'mdo', 'MD13G1123700' => 'mdo', 'MD14G1151900' => 'mdo', 'MD17G1030900' => 'mdo', 'MD17G1068200' => 'mdo', 'MD17G1068600' => 'mdo', 'Medtr3g077540' => 'mtr', 'Medtr4g105530' => 'mtr', 'Medtr8g076580' => 'mtr', 'Medtr8g076590' => 'mtr', 'Medtr8g096410' => 'mtr', 'MELO3C016411.2' => 'cme', 'MELO3C017780.2' => 'cme', 'MELO3C022560.2' => 'cme', 'MELO3C026187.2' => 'cme', 'MELO3C026286.2' => 'cme', 'MELO3C032854.2' => 'cme', 'Migut.H02495' => 'egut', 'Migut.I00561' => 'egut', 'Migut.K01015' => 'egut', 'Migut.K01016' => 'egut', 'Migut.L00743' => 'egut', 'Migut.L00744' => 'egut', 'Migut.L00746' => 'egut', 'Migut.L00798' => 'egut', 'Migut.L00799' => 'egut', 'Migut.N02096' => 'egut', 'MSTRG.11259' => 'ama', 'MSTRG.23142' => 'ama', 'MSTRG.2499' => 'ama', 'Nitab4.5_0000003g0730' => 'nta', 'Nitab4.5_0000137g0020' => 'nta', 'Nitab4.5_0000721g0210' => 'nta', 'Nitab4.5_0000723g0050' => 'nta', 'Nitab4.5_0000913g0070' => 'nta', 'Nitab4.5_0001332g0040' => 'nta', 'Nitab4.5_0001771g0050' => 'nta', 'Nitab4.5_0001918g0050' => 'nta', 'Nitab4.5_0002686g0030' => 'nta', 'Nitab4.5_0003156g0020' => 'nta', 'Nitab4.5_0003383g0040' => 'nta', 'Nitab4.5_0003918g0010' => 'nta', 'Nitab4.5_0006760g0010' => 'nta', 'Nn1g05981' => 'nnu', 'Nn1g06288' => 'nnu', 'Nn3g16371' => 'nnu', 'Nn3g16786' => 'nnu', 'Nn4g22232' => 'nnu', 'Oeu005144.1' => 'oeu', 'Oeu005145.1' => 'oeu', 'Oeu011348.1' => 'oeu', 'Oeu016415.1' => 'oeu', 'Oeu023501.1' => 'oeu', 'Oeu044473.1' => 'oeu', 'Oeu048892.2' => 'oeu', 'Os01g0549200' => 'osa', 'Os02g0469300' => 'osa', 'Os04g0311100' => 'osa', 'Os06g0474900' => 'osa', 'Os10g0181700' => 'osa', 'Os11g0454800' => 'osa', 'Peaxi162Scf00037g00714' => 'pax', 'Peaxi162Scf00084g01217' => 'pax', 'Peaxi162Scf00257g00217' => 'pax', 'Peaxi162Scf00516g00215' => 'pax', 'Peaxi162Scf00689g00123' => 'pax', 'PGR044G2719' => 'pgr', 'PGR083G1360' => 'pgr', 'PGR102G2849' => 'pgr', 'PGR119G2534' => 'pgr', 'PGSC0003DMG400003538' => 'stu', 'PGSC0003DMG400028138' => 'stu', 'PGSC0003DMG400031732' => 'stu', 'PGSC0003DMG400038165' => 'stu', 'Phvul.002G284600' => 'pvu', 'Phvul.003G258200' => 'pvu', 'Phvul.009G176500' => 'pvu', 'Potri.003G167201' => 'ptr', 'Potri.005G118400' => 'ptr', 'Potri.012G089000' => 'ptr', 'Potri.012G102800' => 'ptr', 'Potri.015G079400' => 'ptr', 'Potri.015G100900' => 'ptr', 'Pp3c14_9810' => 'ppa', 'Pp3c15_10450' => 'ppa', 'Pp3c20_19150' => 'ppa', 'Pp3c23_12740' => 'ppa', 'Pp3c23_6310' => 'ppa', 'Pp3c24_3720' => 'ppa', 'Pp3c27_2580' => 'ppa', 'Pp3c9_8990' => 'ppa', 'PRCOL_00002854' => 'pco', 'Prupe.1G221200' => 'ppe', 'Prupe.3G289000' => 'ppe', 'Prupe.5G147000' => 'ppe', 'Prupe.6G157300' => 'ppe', 'Prupe.7G163400' => 'ppe', 'Psat0s2177g0040' => 'psa', 'Psat3g174760' => 'psa', 'Psat3g192160' => 'psa', 'Psat4g058520' => 'psa', 'Psat4g096840' => 'psa', 'Psat7g037320' => 'psa', 'PSO017G1274' => 'pso', 'PSO017G5166' => 'pso', 'PSO063G4558' => 'pso', 'PSO170G4458' => 'pso', 'PSO170G5005' => 'pso', 'PSO210G6156' => 'pso', 'PSO210G6635' => 'pso', 'PSO210G7397' => 'pso', 'PSO210G7700' => 'pso', 'PSO455G0035' => 'pso', 'PSO455G0180' => 'pso', 'PSO478G4515' => 'pso', 'PSO832G1305' => 'pso', 'PSO832G3489' => 'pso', 'QL02p075247' => 'qlo', 'QL03p051148' => 'qlo', 'QL05p010313' => 'qlo', 'QL06p034627' => 'qlo', 'QL10p001889' => 'qlo', 'QL10p010846' => 'qlo', 'RcHm_v2.0_Chr1g0350621' => 'rch', 'RcHm_v2.0_Chr1g0350641' => 'rch', 'RcHm_v2.0_Chr2g0092891' => 'rch', 'RcHm_v2.0_Chr2g0100251' => 'rch', 'RcHm_v2.0_Chr2g0158661' => 'rch', 'RcHm_v2.0_Chr2g0172741' => 'rch', 'RcHm_v2.0_Chr4g0429571' => 'rch', 'RcHm_v2.0_Chr5g0042471' => 'rch', 'RcHm_v2.0_Chr7g0189451' => 'rch', 'Rhsim08G0052000' => 'rsi', 'Rhsim08G0174400' => 'rsi', 'Rhsim08G0193200' => 'rsi', 'Rhsim10G0214800' => 'rsi', 'Rhsim10G0214900' => 'rsi', 'Rhsim10G0215000' => 'rsi', 'Rhsim12G0022900' => 'rsi', 'Rhsim12G0177500' => 'rsi', 'Rhsim12G0177700' => 'rsi', 'Sabra03G0122600' => 'sbr', 'Sabra05G0097400' => 'sbr', 'Sabra12G0064100' => 'sbr', 'Sabra15G0121300' => 'sbr', 'SalBow2G0642' => 'sbo', 'SalBow5G2667' => 'sbo', 'SalBow5G4873' => 'sbo', 'SalBow8G2395' => 'sbo', 'Sc03g0003290' => 'sci', 'Sc10g0010130' => 'sci', 'Sc22g0003650' => 'sci', 'Sed0001603' => 'sed', 'Sed0004259' => 'sed', 'Sed0006789' => 'sed', 'Sed0011838' => 'sed', 'Sed0012964' => 'sed', 'Sed0016383' => 'sed', 'Sed0019010' => 'sed', 'Sed0020188' => 'sed', 'SEGI_04702' => 'sgi', 'SEGI_17231' => 'sgi', 'SEGI_18877' => 'sgi', 'SEGI_25196' => 'sgi', 'SEGI_25515' => 'sgi', 'SEGI_28445' => 'sgi', 'SEGI_37452' => 'sgi', 'SGA_v2.0_scaffold188G40336' => 'sas', 'SGA_v2.0_scaffold228G43247' => 'sas', 'SGA_v2.0_scaffold280G46853' => 'sas', 'SGA_v2.0_scaffold34G13808' => 'sas', 'SGA_v2.0_scaffold40G15576' => 'sas', 'SGA_v2.0_scaffold611G53188' => 'sas', 'SGA_v2.0_scaffold78G25461' => 'sas', 'SGA_v2.0_scaffold90G27888' => 'sas', 'SHI08601' => 'shi', 'SHI08606' => 'shi', 'SHI17117' => 'shi', 'SHI17119' => 'shi', 'SMO118G0201' => 'smo', 'SMO169G0247' => 'smo', 'SMO176G0006' => 'smo', 'SMO176G0015' => 'smo', 'SMO202G0006' => 'smo', 'SMO240G0050' => 'smo', 'SMO286G0009' => 'smo', 'SMO338G0033' => 'smo', 'SMO356G0533' => 'smo', 'SMO364G0382' => 'smo', 'SMO367G0166' => 'smo', 'SMO367G1098' => 'smo', 'Solyc01g009920.3' => 'sly', 'Solyc01g099300.3' => 'sly', 'Solyc02g084700.3' => 'sly', 'Solyc03g097520.3' => 'sly', 'Solyc06g071580.3' => 'sly', 'Solyc10g081760.3' => 'sly', 'Sopen01g005480' => 'spe', 'Sopen01g042850' => 'spe', 'Sopen02g029370' => 'spe', 'Sopen03g028280' => 'spe', 'Sopen06g027870' => 'spe', 'Sopen10g032270' => 'spe', 'Sp5g18180' => 'spa', 'Sp6g12880' => 'spa', 'Sp6g30850' => 'spa', 'Sp7g22960' => 'spa', 'Sp7g34010' => 'spa', 'SpUn1326_0010' => 'spa', 'TAR371G0242' => 'tar', 'TAR622G0638' => 'tar', 'TAR628G1548' => 'tar', 'TAR629G1079' => 'tar', 'TAR629G3413' => 'tar', 'THA.LOC104804249' => 'tha', 'THA.LOC104808315' => 'tha', 'THA.LOC104809238' => 'tha', 'THA.LOC104825484' => 'tha', 'Thecc.01G025500' => 'tca', 'Thecc.03G015800' => 'tca', 'Thecc.03G018000' => 'tca', 'Thecc.03G134800' => 'tca', 'Thecc.04G014700' => 'tca', 'Thhalv10006991m.g' => 'esa', 'Thhalv10012707m.g' => 'esa', 'Thhalv10015739m.g' => 'esa', 'Thhalv10024553m.g' => 'esa', 'Thhalv10024673m.g' => 'esa', 'Thhalv10029187m.g' => 'esa', 'TPR.G12971' => 'tpr', 'TPR.G29396' => 'tpr', 'TPR.G33376' => 'tpr', 'TPR.G35508' => 'tpr', 'TPR.G35516' => 'tpr', 'TPR.G37317' => 'tpr', 'TPR.G37389' => 'tpr', 'TPR.G37523' => 'tpr', 'TPR.G559' => 'tpr', 'TWI14G0070' => 'twi', 'TWI14G0729' => 'twi', 'TWI18G0596' => 'twi', 'TWI39G0780' => 'twi', 'TWI39G0850' => 'twi', 'TWI73G1052' => 'twi', 'unitig_52.g17485' => 'ugi', 'unitig_61.g26355' => 'ugi', 'vmacro01040' => 'vma', 'vmacro16731' => 'vma', 'vmacro18270' => 'vma', 'vmacro19142' => 'vma', 'vmacro19407' => 'vma', 'vmacro19408' => 'vma', 'vmacro21899' => 'vma', 'vmacro21900' => 'vma', 'vmacro21901' => 'vma', 'VMungo0251G0490' => 'vmu', 'VMungo0251G1748' => 'vmu', 'VMungo1309G0421' => 'vmu', 'Zm00001eb086500' => 'zma', 'Zm00001eb150680' => 'zma', 'Zm00001eb162330' => 'zma', 'Zm00001eb203130' => 'zma', 'Zm00001eb369480' => 'zma', 'Zm00001eb382340' => 'zma', 'Zm00001eb416360' => 'zma' ), 'gf_id' => 'HOM05D000902', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000902' ), 'data_identifier' => 'HOM05D000902', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000902', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '663', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02470' => 'bna', 'A01p16260' => 'bna', 'A02p01680' => 'bna', 'A03p16600' => 'bna', 'A03p55660' => 'bna', 'A03p64160' => 'bna', 'A03p64170' => 'bna', 'A08p31900' => 'bna', 'A09p59530' => 'bna', 'A10p08230' => 'bna', 'A10p25090' => 'bna', 'Aa31LG3G7100' => 'aar', 'Aa31LG3G7110' => 'aar', 'Aa31LG6G13160' => 'aar', 'Aa31LG7G10770' => 'aar', 'Aa31LG7G3830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2723' => 'aag', 'Actinidia08045' => 'ach', 'Actinidia08888' => 'ach', 'Actinidia18333' => 'ach', 'Actinidia19334' => 'ach', 'Actinidia25552' => 'ach', 'Actinidia26089' => 'ach', 'Actinidia30615' => 'ach', 'Actinidia30616' => 'ach', 'Actinidia33083' => 'ach', 'Actinidia35762' => 'ach', 'Ah.02g110620' => 'amhyb', 'Ah.11g046390' => 'amhyb', 'AL1G31670' => 'aly', 'AL6G23730' => 'aly', 'AL7G14740' => 'aly', 'AL7G14750' => 'aly', 'AL7G14760' => 'aly', 'AL7G28220' => 'aly', 'AL8G24940' => 'aly', 'Aqoxy3G01665' => 'aox', 'Aqoxy3G02853' => 'aox', 'Aqoxy5G01513' => 'aox', 'Aqoxy5G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8SKA4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ75LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKDA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0LJZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7REX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZP4YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWX7I5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2QKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS0L9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPCD8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q161UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC7XCF' => 'arhy', 'AT1G19100' => 'ath', 'AT4G24970' => 'ath', 'AT4G36270' => 'ath', 'AT4G36280' => 'ath', 'AT4G36290' => 'ath', 'AT5G13130' => 'ath', 'AT5G50780' => 'ath', 'ATR0582G266' => 'atr', 'ATR0661G195' => 'atr', 'ATR1152G031' => 'atr', 'Atru.chr11.2382' => 'acertr', 'Atru.chr12.2337' => 'acertr', 'Atru.chr3.744' => 'acertr', 'Atru.chr6.1870' => 'acertr', 'Atru.chr9.2515' => 'acertr', 'AUR62004120' => 'cqu', 'AUR62005667' => 'cqu', 'AUR62007634' => 'cqu', 'AUR62008186' => 'cqu', 'AUR62008187' => 'cqu', 'AUR62008188' => 'cqu', 'AUR62027954' => 'cqu', 'AUR62028766' => 'cqu', 'AUR62028767' => 'cqu', 'AUR62028768' => 'cqu', 'AUR62028886' => 'cqu', 'AUR62029563' => 'cqu', 'AUR62038832' => 'cqu', 'BcaB01g04149' => 'bca', 'BcaB03g12940' => 'bca', 'BcaB03g13090' => 'bca', 'BcaB03g14466' => 'bca', 'BcaB05g24035' => 'bca', 'BcaC01g06050' => 'bca', 'BcaC04g19148' => 'bca', 'BcaC04g20761' => 'bca', 'BcaC06g32845' => 'bca', 'BcaC07g41274' => 'bca', 'BcaC09g50827' => 'bca', 'BcaNung00741' => 'bca', 'BcaNung00742' => 'bca', 'BcaNung01859' => 'bca', 'BcaNung03985' => 'bca', 'BcaNung03989' => 'bca', 'BcaNung05661' => 'bca', 'BolC1t00257H' => 'bol', 'BolC1t01956H' => 'bol', 'BolC2t06534H' => 'bol', 'BolC3t14334H' => 'bol', 'BolC5t30451H' => 'bol', 'BolC7t45880H' => 'bol', 'BolC7t46586H' => 'bol', 'BolC8t49301H' => 'bol', 'BolC8t51837H' => 'bol', 'BolC9t56822H' => 'bol', 'BolC9t59235H' => 'bol', 'BraA01t00234Z' => 'bra', 'BraA01t01563Z' => 'bra', 'BraA02t05147Z' => 'bra', 'BraA03t10947Z' => 'bra', 'BraA03t14633Z' => 'bra', 'BraA08t35112Z' => 'bra', 'BraA09t41330Z' => 'bra', 'BraA10t44570Z' => 'bra', 'C01p02670' => 'bna', 'C01p20260' => 'bna', 'C02p05890' => 'bna', 'C03p19530' => 'bna', 'C05p17470' => 'bna', 'C07p53900' => 'bna', 'C07p61630' => 'bna', 'C08p16800' => 'bna', 'C08p42810' => 'bna', 'C09p39480' => 'bna', 'C09p63980' => 'bna', 'CAN.G1001.7' => 'can', 'CAN.G1034.55' => 'can', 'CAN.G143.7' => 'can', 'CAN.G3340.1' => 'can', 'CAN.G358.19' => 'can', 'CAN.G373.2' => 'can', 'CAN.G674.16' => 'can', 'CAN.G674.17' => 'can', 'CAN.G674.18' => 'can', 'CAN.G732.2' => 'can', 'CAN.G732.3' => 'can', 'CAN.G993.39' => 'can', 'CANSAT01G2052' => 'cansat', 'CANSAT80G0070' => 'cansat', 'CANSAT80G0483' => 'cansat', 'CANSAT80G0625' => 'cansat', 'CARHR019690' => 'chi', 'CARHR080280' => 'chi', 'CARHR152750' => 'chi', 'CARHR152760' => 'chi', 'CARHR152770' => 'chi', 'CARHR200340' => 'chi', 'CARHR232370' => 'chi', 'CARHR244670' => 'chi', 'CARHR244680' => 'chi', 'CARHR257520' => 'chi', 'Carub.0001s1872' => 'cru', 'Carub.0006s1130' => 'cru', 'Carub.0007s0396' => 'cru', 'Carub.0007s0397' => 'cru', 'Carub.0007s1608' => 'cru', 'Carub.0008s1068' => 'cru', 'Carub.0008s1077' => 'cru', 'Ca_16158_v3' => 'car', 'Ca_17571_v3' => 'car', 'Ca_21936_v3' => 'car', 'Ca_22350_v3' => 'car', 'CBR_g22445' => 'cbr', 'CBR_g26290' => 'cbr', 'Cc04_g09610' => 'ccan', 'Cc04_g12280' => 'ccan', 'Cc07_g10230' => 'ccan', 'CDE02G0093' => 'cde', 'CDE02G0701' => 'cde', 'CDE04G1050' => 'cde', 'CDE05G1833' => 'cde', 'CDE05G3058' => 'cde', 'CDE05G3380' => 'cde', 'CDE06G0536' => 'cde', 'Cfa006923' => 'cfa', 'Cfa009402' => 'cfa', 'Cfa018751' => 'cfa', 'Cfa019164' => 'cfa', 'Cfa022935' => 'cfa', 'Ciclev10019081m.g' => 'ccl', 'Ciclev10025076m.g' => 'ccl', 'Ciclev10030712m.g' => 'ccl', 'Ciclev10033760m.g' => 'ccl', 'CiPaw.05G105600' => 'cil', 'CiPaw.08G136700' => 'cil', 'CiPaw.11G003900' => 'cil', 'CiPaw.11G023700' => 'cil', 'CiPaw.12G003700' => 'cil', 'ClCG06G017100' => 'cla', 'ClCG06G018110' => 'cla', 'ClCG07G008800' => 'cla', 'ClCG07G015330' => 'cla', 'COL.COLO4_13698' => 'col', 'COL.COLO4_16659' => 'col', 'COL.COLO4_21986' => 'col', 'COL.COLO4_24049' => 'col', 'COL.COLO4_29061' => 'col', 'COL.COLO4_29075' => 'col', 'COL.COLO4_30094' => 'col', 'Cpa.g.c33689' => 'cpa', 'Cpa.g.sc108.39' => 'cpa', 'Cpa.g.sc108.41' => 'cpa', 'Cpa.g.sc1163.1' => 'cpa', 'Cpa.g.sc4.155' => 'cpa', 'Cpa.g.sc6.194' => 'cpa', 'CsaV3_1G000340' => 'csa', 'CsaV3_1G001400' => 'csa', 'CsaV3_4G002220' => 'csa', 'CsaV3_4G005370' => 'csa', 'CSS0007487' => 'camsi', 'CSS0008066' => 'camsi', 'CSS0009120' => 'camsi', 'CSS0015512' => 'camsi', 'CSS0022409' => 'camsi', 'CSS0025358' => 'camsi', 'CSS0044547' => 'camsi', 'DCAR_013057' => 'dca', 'DCAR_015058' => 'dca', 'DCAR_016027' => 'dca', 'DCAR_017327' => 'dca', 'DCAR_020743' => 'dca', 'DCAR_026157' => 'dca', 'DCAR_032339' => 'dca', 'DCAR_032340' => 'dca', 'Dinv11200' => 'din', 'Dinv11201' => 'din', 'Dinv20631' => 'din', 'Dinv23182' => 'din', 'Dinv33466' => 'din', 'Dinv33583' => 'din', 'Dinv38565' => 'din', 'Duzib068G0200' => 'dzi', 'Duzib147G0132' => 'dzi', 'Duzib147G0635' => 'dzi', 'Duzib205G1670' => 'dzi', 'Duzib251G0606' => 'dzi', 'ECA232G3336' => 'eca', 'ECA232G3763' => 'eca', 'ECA232G4845' => 'eca', 'ECA234G1607' => 'eca', 'ECA246G0932' => 'eca', 'ECA247G0781' => 'eca', 'ECA247G1932' => 'eca', 'ECA247G2079' => 'eca', 'ECA247G3338' => 'eca', 'ECA247G4115' => 'eca', 'EL10Ac3g06552' => 'bvu', 'EL10Ac5g10721' => 'bvu', 'EL10Ac5g10722' => 'bvu', 'EL10Ac5g10723' => 'bvu', 'EL10Ac5g11361' => 'bvu', 'EL10Ac6g13553' => 'bvu', 'EL10As8g23872' => 'bvu', 'Eucgr.B00250' => 'egr', 'Eucgr.B00251' => 'egr', 'Eucgr.B03533' => 'egr', 'Eucgr.I02381' => 'egr', 'Eucgr.K02700' => 'egr', 'FAN02G0174' => 'fan', 'FAN02G3146' => 'fan', 'FAN04G1672' => 'fan', 'FAN04G2273' => 'fan', 'FAN05G2791' => 'fan', 'FAN05G4035' => 'fan', 'FAN07G0834' => 'fan', 'FAN08G1198' => 'fan', 'FAN09G4182' => 'fan', 'FAN12G0496' => 'fan', 'FAN13G1027' => 'fan', 'FAN13G2951' => 'fan', 'FAN14G0705' => 'fan', 'FAN14G0720' => 'fan', 'FAN17G0201' => 'fan', 'FAN17G2665' => 'fan', 'FAN18G1456' => 'fan', 'FAN18G1525' => 'fan', 'FAN18G3500' => 'fan', 'FAN28G2670' => 'fan', 'FvH4_1g12391' => 'fve', 'FvH4_4g23220' => 'fve', 'FvH4_5g08810' => 'fve', 'FvH4_5g28960' => 'fve', 'FvH4_6g42820' => 'fve', 'FvH4_6g51110' => 'fve', 'Glyma.02G051802' => 'gma', 'Glyma.04G185300' => 'gma', 'Glyma.05G202900' => 'gma', 'Glyma.08G010300' => 'gma', 'Glyma.16G131900' => 'gma', 'Glyma.17G087900' => 'gma', 'Gohir.A07G048600' => 'ghi', 'Gohir.A11G179000' => 'ghi', 'Gohir.A12G140900' => 'ghi', 'Gohir.A12G140950' => 'ghi', 'Gohir.A12G191700' => 'ghi', 'Gohir.A13G086300' => 'ghi', 'Gohir.D07G052900' => 'ghi', 'Gohir.D11G186600' => 'ghi', 'Gohir.D12G145575' => 'ghi', 'Gohir.D12G145650' => 'ghi', 'Gohir.D12G145725' => 'ghi', 'Gohir.D12G194050' => 'ghi', 'Gohir.D13G091800' => 'ghi', 'Gorai.001G055900' => 'gra', 'Gorai.007G198400' => 'gra', 'Gorai.008G157000' => 'gra', 'Gorai.008G157100' => 'gra', 'Gorai.008G208700' => 'gra', 'Gorai.010G138700' => 'gra', 'GSVIVG01000977001' => 'vvi', 'GSVIVG01007708001' => 'vvi', 'GSVIVG01008587001' => 'vvi', 'GSVIVG01018849001' => 'vvi', 'GSVIVG01032432001' => 'vvi', 'HanXRQChr02g0034131' => 'han', 'HanXRQChr02g0035981' => 'han', 'HanXRQChr02g0035991' => 'han', 'HanXRQChr05g0155611' => 'han', 'HanXRQChr05g0155621' => 'han', 'HanXRQChr08g0236501' => 'han', 'HanXRQChr09g0261321' => 'han', 'HanXRQChr09g0272081' => 'han', 'HanXRQChr10g0310741' => 'han', 'HanXRQChr11g0325591' => 'han', 'HanXRQChr12g0385691' => 'han', 'HanXRQChr13g0387801' => 'han', 'HanXRQChr15g0463011' => 'han', 'Haze_03826' => 'cav', 'Haze_03827' => 'cav', 'Haze_07183' => 'cav', 'Haze_07537' => 'cav', 'Haze_07539' => 'cav', 'Haze_12461' => 'cav', 'Haze_16115' => 'cav', 'Haze_16808' => 'cav', 'Haze_18531' => 'cav', 'Hma1.2p1_0046F.1_g026700' => 'hma', 'Hma1.2p1_0046F.1_g026710' => 'hma', 'Hma1.2p1_0168F.1_g074340' => 'hma', 'Hma1.2p1_0266F.1_g107030' => 'hma', 'Hma1.2p1_0266F.1_g107060' => 'hma', 'Hma1.2p1_0275F.1_g110510' => 'hma', 'Hma1.2p1_0592F.1_g185490' => 'hma', 'Hma1.2p1_0592F.1_g185500' => 'hma', 'Hma1.2p1_0592F.1_g185510' => 'hma', 'Hma1.2p1_0592F.1_g185520' => 'hma', 'Hma1.2p1_0592F.1_g185530' => 'hma', 'Hma1.2p1_0818F.1_g223450' => 'hma', 'HPP92_009708' => 'vpl', 'HPP92_009793' => 'vpl', 'HPP92_009796' => 'vpl', 'HPP92_009797' => 'vpl', 'HPP92_014940' => 'vpl', 'HPP92_014988' => 'vpl', 'Hund02463' => 'sun', 'Hund02760' => 'sun', 'Hund05071' => 'sun', 'Hund10108' => 'sun', 'Hund11204' => 'sun', 'Hund14016' => 'sun', 'Hund16464' => 'sun', 'Lalb_Chr09g0333391' => 'lal', 'Lalb_Chr11g0070461' => 'lal', 'Lalb_Chr12g0201671' => 'lal', 'Lalb_Chr13g0297161' => 'lal', 'Lj1g0002823' => 'lja', 'Lj3C1074T6' => 'lonja', 'Lj4A212T28' => 'lonja', 'Lj4g0005516' => 'lja', 'Lj4g0013705' => 'lja', 'Lj4g0027865' => 'lja', 'Lj5C92G16' => 'lonja', 'Lj5C92T12' => 'lonja', 'Lj7C596T3' => 'lonja', 'Lj9A446G59' => 'lonja', 'Lj9A482G21' => 'lonja', 'Lsat_1_v5_gn_1_28261' => 'lsa', 'Lsat_1_v5_gn_1_28281' => 'lsa', 'Lsat_1_v5_gn_1_32721' => 'lsa', 'Lsat_1_v5_gn_4_151760' => 'lsa', 'Lsat_1_v5_gn_4_2120' => 'lsa', 'Lsat_1_v5_gn_4_75761' => 'lsa', 'Lsat_1_v5_gn_5_10920' => 'lsa', 'Manes.02G099900' => 'mes', 'Manes.11G096200' => 'mes', 'Manes.12G007200' => 'mes', 'Manes.14G048300' => 'mes', 'Manes.17G114700' => 'mes', 'Mapoly0002s0070' => 'mpo', 'Mapoly0029s0099' => 'mpo', 'MBI07_g24742_MAGBIO' => 'mbi', 'MBI10_g27988_MAGBIO' => 'mbi', 'MBI11_g13057_MAGBIO' => 'mbi', 'MD02G1137200' => 'mdo', 'MD06G1137200' => 'mdo', 'MD07G1122300' => 'mdo', 'MD09G1078200' => 'mdo', 'MD13G1123700' => 'mdo', 'MD14G1151900' => 'mdo', 'MD17G1030900' => 'mdo', 'MD17G1068200' => 'mdo', 'MD17G1068600' => 'mdo', 'Medtr3g077540' => 'mtr', 'Medtr4g105530' => 'mtr', 'Medtr8g076580' => 'mtr', 'Medtr8g076590' => 'mtr', 'Medtr8g096410' => 'mtr', 'MELO3C016411.2' => 'cme', 'MELO3C017780.2' => 'cme', 'MELO3C022560.2' => 'cme', 'MELO3C026187.2' => 'cme', 'MELO3C026286.2' => 'cme', 'MELO3C032854.2' => 'cme', 'Migut.H02495' => 'egut', 'Migut.I00561' => 'egut', 'Migut.K01015' => 'egut', 'Migut.K01016' => 'egut', 'Migut.L00743' => 'egut', 'Migut.L00744' => 'egut', 'Migut.L00746' => 'egut', 'Migut.L00798' => 'egut', 'Migut.L00799' => 'egut', 'Migut.N02096' => 'egut', 'MSTRG.11259' => 'ama', 'MSTRG.23142' => 'ama', 'MSTRG.2499' => 'ama', 'Nitab4.5_0000003g0730' => 'nta', 'Nitab4.5_0000137g0020' => 'nta', 'Nitab4.5_0000721g0210' => 'nta', 'Nitab4.5_0000723g0050' => 'nta', 'Nitab4.5_0000913g0070' => 'nta', 'Nitab4.5_0001332g0040' => 'nta', 'Nitab4.5_0001771g0050' => 'nta', 'Nitab4.5_0001918g0050' => 'nta', 'Nitab4.5_0002686g0030' => 'nta', 'Nitab4.5_0003156g0020' => 'nta', 'Nitab4.5_0003383g0040' => 'nta', 'Nitab4.5_0003918g0010' => 'nta', 'Nitab4.5_0006760g0010' => 'nta', 'Nn1g05981' => 'nnu', 'Nn1g06288' => 'nnu', 'Nn3g16371' => 'nnu', 'Nn3g16786' => 'nnu', 'Nn4g22232' => 'nnu', 'Oeu005144.1' => 'oeu', 'Oeu005145.1' => 'oeu', 'Oeu011348.1' => 'oeu', 'Oeu016415.1' => 'oeu', 'Oeu023501.1' => 'oeu', 'Oeu044473.1' => 'oeu', 'Oeu048892.2' => 'oeu', 'Os01g0549200' => 'osa', 'Os02g0469300' => 'osa', 'Os04g0311100' => 'osa', 'Os06g0474900' => 'osa', 'Os10g0181700' => 'osa', 'Os11g0454800' => 'osa', 'Peaxi162Scf00037g00714' => 'pax', 'Peaxi162Scf00084g01217' => 'pax', 'Peaxi162Scf00257g00217' => 'pax', 'Peaxi162Scf00516g00215' => 'pax', 'Peaxi162Scf00689g00123' => 'pax', 'PGR044G2719' => 'pgr', 'PGR083G1360' => 'pgr', 'PGR102G2849' => 'pgr', 'PGR119G2534' => 'pgr', 'PGSC0003DMG400003538' => 'stu', 'PGSC0003DMG400028138' => 'stu', 'PGSC0003DMG400031732' => 'stu', 'PGSC0003DMG400038165' => 'stu', 'Phvul.002G284600' => 'pvu', 'Phvul.003G258200' => 'pvu', 'Phvul.009G176500' => 'pvu', 'Potri.003G167201' => 'ptr', 'Potri.005G118400' => 'ptr', 'Potri.012G089000' => 'ptr', 'Potri.012G102800' => 'ptr', 'Potri.015G079400' => 'ptr', 'Potri.015G100900' => 'ptr', 'Pp3c14_9810' => 'ppa', 'Pp3c15_10450' => 'ppa', 'Pp3c20_19150' => 'ppa', 'Pp3c23_12740' => 'ppa', 'Pp3c23_6310' => 'ppa', 'Pp3c24_3720' => 'ppa', 'Pp3c27_2580' => 'ppa', 'Pp3c9_8990' => 'ppa', 'PRCOL_00002854' => 'pco', 'Prupe.1G221200' => 'ppe', 'Prupe.3G289000' => 'ppe', 'Prupe.5G147000' => 'ppe', 'Prupe.6G157300' => 'ppe', 'Prupe.7G163400' => 'ppe', 'Psat0s2177g0040' => 'psa', 'Psat3g174760' => 'psa', 'Psat3g192160' => 'psa', 'Psat4g058520' => 'psa', 'Psat4g096840' => 'psa', 'Psat7g037320' => 'psa', 'PSO017G1274' => 'pso', 'PSO017G5166' => 'pso', 'PSO063G4558' => 'pso', 'PSO170G4458' => 'pso', 'PSO170G5005' => 'pso', 'PSO210G6156' => 'pso', 'PSO210G6635' => 'pso', 'PSO210G7397' => 'pso', 'PSO210G7700' => 'pso', 'PSO455G0035' => 'pso', 'PSO455G0180' => 'pso', 'PSO478G4515' => 'pso', 'PSO832G1305' => 'pso', 'PSO832G3489' => 'pso', 'QL02p075247' => 'qlo', 'QL03p051148' => 'qlo', 'QL05p010313' => 'qlo', 'QL06p034627' => 'qlo', 'QL10p001889' => 'qlo', 'QL10p010846' => 'qlo', 'RcHm_v2.0_Chr1g0350621' => 'rch', 'RcHm_v2.0_Chr1g0350641' => 'rch', 'RcHm_v2.0_Chr2g0092891' => 'rch', 'RcHm_v2.0_Chr2g0100251' => 'rch', 'RcHm_v2.0_Chr2g0158661' => 'rch', 'RcHm_v2.0_Chr2g0172741' => 'rch', 'RcHm_v2.0_Chr4g0429571' => 'rch', 'RcHm_v2.0_Chr5g0042471' => 'rch', 'RcHm_v2.0_Chr7g0189451' => 'rch', 'Rhsim08G0052000' => 'rsi', 'Rhsim08G0174400' => 'rsi', 'Rhsim08G0193200' => 'rsi', 'Rhsim10G0214800' => 'rsi', 'Rhsim10G0214900' => 'rsi', 'Rhsim10G0215000' => 'rsi', 'Rhsim12G0022900' => 'rsi', 'Rhsim12G0177500' => 'rsi', 'Rhsim12G0177700' => 'rsi', 'Sabra03G0122600' => 'sbr', 'Sabra05G0097400' => 'sbr', 'Sabra12G0064100' => 'sbr', 'Sabra15G0121300' => 'sbr', 'SalBow2G0642' => 'sbo', 'SalBow5G2667' => 'sbo', 'SalBow5G4873' => 'sbo', 'SalBow8G2395' => 'sbo', 'Sc03g0003290' => 'sci', 'Sc10g0010130' => 'sci', 'Sc22g0003650' => 'sci', 'Sed0001603' => 'sed', 'Sed0004259' => 'sed', 'Sed0006789' => 'sed', 'Sed0011838' => 'sed', 'Sed0012964' => 'sed', 'Sed0016383' => 'sed', 'Sed0019010' => 'sed', 'Sed0020188' => 'sed', 'SEGI_04702' => 'sgi', 'SEGI_17231' => 'sgi', 'SEGI_18877' => 'sgi', 'SEGI_25196' => 'sgi', 'SEGI_25515' => 'sgi', 'SEGI_28445' => 'sgi', 'SEGI_37452' => 'sgi', 'SGA_v2.0_scaffold188G40336' => 'sas', 'SGA_v2.0_scaffold228G43247' => 'sas', 'SGA_v2.0_scaffold280G46853' => 'sas', 'SGA_v2.0_scaffold34G13808' => 'sas', 'SGA_v2.0_scaffold40G15576' => 'sas', 'SGA_v2.0_scaffold611G53188' => 'sas', 'SGA_v2.0_scaffold78G25461' => 'sas', 'SGA_v2.0_scaffold90G27888' => 'sas', 'SHI08601' => 'shi', 'SHI08606' => 'shi', 'SHI17117' => 'shi', 'SHI17119' => 'shi', 'SMO118G0201' => 'smo', 'SMO169G0247' => 'smo', 'SMO176G0006' => 'smo', 'SMO176G0015' => 'smo', 'SMO202G0006' => 'smo', 'SMO240G0050' => 'smo', 'SMO286G0009' => 'smo', 'SMO338G0033' => 'smo', 'SMO356G0533' => 'smo', 'SMO364G0382' => 'smo', 'SMO367G0166' => 'smo', 'SMO367G1098' => 'smo', 'Solyc01g009920.3' => 'sly', 'Solyc01g099300.3' => 'sly', 'Solyc02g084700.3' => 'sly', 'Solyc03g097520.3' => 'sly', 'Solyc06g071580.3' => 'sly', 'Solyc10g081760.3' => 'sly', 'Sopen01g005480' => 'spe', 'Sopen01g042850' => 'spe', 'Sopen02g029370' => 'spe', 'Sopen03g028280' => 'spe', 'Sopen06g027870' => 'spe', 'Sopen10g032270' => 'spe', 'Sp5g18180' => 'spa', 'Sp6g12880' => 'spa', 'Sp6g30850' => 'spa', 'Sp7g22960' => 'spa', 'Sp7g34010' => 'spa', 'SpUn1326_0010' => 'spa', 'TAR371G0242' => 'tar', 'TAR622G0638' => 'tar', 'TAR628G1548' => 'tar', 'TAR629G1079' => 'tar', 'TAR629G3413' => 'tar', 'THA.LOC104804249' => 'tha', 'THA.LOC104808315' => 'tha', 'THA.LOC104809238' => 'tha', 'THA.LOC104825484' => 'tha', 'Thecc.01G025500' => 'tca', 'Thecc.03G015800' => 'tca', 'Thecc.03G018000' => 'tca', 'Thecc.03G134800' => 'tca', 'Thecc.04G014700' => 'tca', 'Thhalv10006991m.g' => 'esa', 'Thhalv10012707m.g' => 'esa', 'Thhalv10015739m.g' => 'esa', 'Thhalv10024553m.g' => 'esa', 'Thhalv10024673m.g' => 'esa', 'Thhalv10029187m.g' => 'esa', 'TPR.G12971' => 'tpr', 'TPR.G29396' => 'tpr', 'TPR.G33376' => 'tpr', 'TPR.G35508' => 'tpr', 'TPR.G35516' => 'tpr', 'TPR.G37317' => 'tpr', 'TPR.G37389' => 'tpr', 'TPR.G37523' => 'tpr', 'TPR.G559' => 'tpr', 'TWI14G0070' => 'twi', 'TWI14G0729' => 'twi', 'TWI18G0596' => 'twi', 'TWI39G0780' => 'twi', 'TWI39G0850' => 'twi', 'TWI73G1052' => 'twi', 'unitig_52.g17485' => 'ugi', 'unitig_61.g26355' => 'ugi', 'vmacro01040' => 'vma', 'vmacro16731' => 'vma', 'vmacro18270' => 'vma', 'vmacro19142' => 'vma', 'vmacro19407' => 'vma', 'vmacro19408' => 'vma', 'vmacro21899' => 'vma', 'vmacro21900' => 'vma', 'vmacro21901' => 'vma', 'VMungo0251G0490' => 'vmu', 'VMungo0251G1748' => 'vmu', 'VMungo1309G0421' => 'vmu', 'Zm00001eb086500' => 'zma', 'Zm00001eb150680' => 'zma', 'Zm00001eb162330' => 'zma', 'Zm00001eb203130' => 'zma', 'Zm00001eb369480' => 'zma', 'Zm00001eb382340' => 'zma', 'Zm00001eb416360' => 'zma' ) $gf_id = 'HOM05D000902' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000902' ) $data_identifier = 'HOM05D000902' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 13, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 10, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 6, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 9, 'hma' => (int) 12, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 4, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 6, 'ppa' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 6, 'rch' => (int) 9, 'rsi' => (int) 9, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 12, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 3, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416360' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000902', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '663', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02470' => 'bna', 'A01p16260' => 'bna', 'A02p01680' => 'bna', 'A03p16600' => 'bna', 'A03p55660' => 'bna', 'A03p64160' => 'bna', 'A03p64170' => 'bna', 'A08p31900' => 'bna', 'A09p59530' => 'bna', 'A10p08230' => 'bna', 'A10p25090' => 'bna', 'Aa31LG3G7100' => 'aar', 'Aa31LG3G7110' => 'aar', 'Aa31LG6G13160' => 'aar', 'Aa31LG7G10770' => 'aar', 'Aa31LG7G3830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2723' => 'aag', 'Actinidia08045' => 'ach', 'Actinidia08888' => 'ach', 'Actinidia18333' => 'ach', 'Actinidia19334' => 'ach', 'Actinidia25552' => 'ach', 'Actinidia26089' => 'ach', 'Actinidia30615' => 'ach', 'Actinidia30616' => 'ach', 'Actinidia33083' => 'ach', 'Actinidia35762' => 'ach', 'Ah.02g110620' => 'amhyb', 'Ah.11g046390' => 'amhyb', 'AL1G31670' => 'aly', 'AL6G23730' => 'aly', 'AL7G14740' => 'aly', 'AL7G14750' => 'aly', 'AL7G14760' => 'aly', 'AL7G28220' => 'aly', 'AL8G24940' => 'aly', 'Aqoxy3G01665' => 'aox', 'Aqoxy3G02853' => 'aox', 'Aqoxy5G01513' => 'aox', 'Aqoxy5G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8SKA4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ75LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKDA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0LJZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7REX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZP4YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWX7I5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2QKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS0L9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPCD8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q161UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC7XCF' => 'arhy', 'AT1G19100' => 'ath', 'AT4G24970' => 'ath', 'AT4G36270' => 'ath', 'AT4G36280' => 'ath', 'AT4G36290' => 'ath', 'AT5G13130' => 'ath', 'AT5G50780' => 'ath', 'ATR0582G266' => 'atr', 'ATR0661G195' => 'atr', 'ATR1152G031' => 'atr', 'Atru.chr11.2382' => 'acertr', 'Atru.chr12.2337' => 'acertr', 'Atru.chr3.744' => 'acertr', 'Atru.chr6.1870' => 'acertr', 'Atru.chr9.2515' => 'acertr', 'AUR62004120' => 'cqu', 'AUR62005667' => 'cqu', 'AUR62007634' => 'cqu', 'AUR62008186' => 'cqu', 'AUR62008187' => 'cqu', 'AUR62008188' => 'cqu', 'AUR62027954' => 'cqu', 'AUR62028766' => 'cqu', 'AUR62028767' => 'cqu', 'AUR62028768' => 'cqu', 'AUR62028886' => 'cqu', 'AUR62029563' => 'cqu', 'AUR62038832' => 'cqu', 'BcaB01g04149' => 'bca', 'BcaB03g12940' => 'bca', 'BcaB03g13090' => 'bca', 'BcaB03g14466' => 'bca', 'BcaB05g24035' => 'bca', 'BcaC01g06050' => 'bca', 'BcaC04g19148' => 'bca', 'BcaC04g20761' => 'bca', 'BcaC06g32845' => 'bca', 'BcaC07g41274' => 'bca', 'BcaC09g50827' => 'bca', 'BcaNung00741' => 'bca', 'BcaNung00742' => 'bca', 'BcaNung01859' => 'bca', 'BcaNung03985' => 'bca', 'BcaNung03989' => 'bca', 'BcaNung05661' => 'bca', 'BolC1t00257H' => 'bol', 'BolC1t01956H' => 'bol', 'BolC2t06534H' => 'bol', 'BolC3t14334H' => 'bol', 'BolC5t30451H' => 'bol', 'BolC7t45880H' => 'bol', 'BolC7t46586H' => 'bol', 'BolC8t49301H' => 'bol', 'BolC8t51837H' => 'bol', 'BolC9t56822H' => 'bol', 'BolC9t59235H' => 'bol', 'BraA01t00234Z' => 'bra', 'BraA01t01563Z' => 'bra', 'BraA02t05147Z' => 'bra', 'BraA03t10947Z' => 'bra', 'BraA03t14633Z' => 'bra', 'BraA08t35112Z' => 'bra', 'BraA09t41330Z' => 'bra', 'BraA10t44570Z' => 'bra', 'C01p02670' => 'bna', 'C01p20260' => 'bna', 'C02p05890' => 'bna', 'C03p19530' => 'bna', 'C05p17470' => 'bna', 'C07p53900' => 'bna', 'C07p61630' => 'bna', 'C08p16800' => 'bna', 'C08p42810' => 'bna', 'C09p39480' => 'bna', 'C09p63980' => 'bna', 'CAN.G1001.7' => 'can', 'CAN.G1034.55' => 'can', 'CAN.G143.7' => 'can', 'CAN.G3340.1' => 'can', 'CAN.G358.19' => 'can', 'CAN.G373.2' => 'can', 'CAN.G674.16' => 'can', 'CAN.G674.17' => 'can', 'CAN.G674.18' => 'can', 'CAN.G732.2' => 'can', 'CAN.G732.3' => 'can', 'CAN.G993.39' => 'can', 'CANSAT01G2052' => 'cansat', 'CANSAT80G0070' => 'cansat', 'CANSAT80G0483' => 'cansat', 'CANSAT80G0625' => 'cansat', 'CARHR019690' => 'chi', 'CARHR080280' => 'chi', 'CARHR152750' => 'chi', 'CARHR152760' => 'chi', 'CARHR152770' => 'chi', 'CARHR200340' => 'chi', 'CARHR232370' => 'chi', 'CARHR244670' => 'chi', 'CARHR244680' => 'chi', 'CARHR257520' => 'chi', 'Carub.0001s1872' => 'cru', 'Carub.0006s1130' => 'cru', 'Carub.0007s0396' => 'cru', 'Carub.0007s0397' => 'cru', 'Carub.0007s1608' => 'cru', 'Carub.0008s1068' => 'cru', 'Carub.0008s1077' => 'cru', 'Ca_16158_v3' => 'car', 'Ca_17571_v3' => 'car', 'Ca_21936_v3' => 'car', 'Ca_22350_v3' => 'car', 'CBR_g22445' => 'cbr', 'CBR_g26290' => 'cbr', 'Cc04_g09610' => 'ccan', 'Cc04_g12280' => 'ccan', 'Cc07_g10230' => 'ccan', 'CDE02G0093' => 'cde', 'CDE02G0701' => 'cde', 'CDE04G1050' => 'cde', 'CDE05G1833' => 'cde', 'CDE05G3058' => 'cde', 'CDE05G3380' => 'cde', 'CDE06G0536' => 'cde', 'Cfa006923' => 'cfa', 'Cfa009402' => 'cfa', 'Cfa018751' => 'cfa', 'Cfa019164' => 'cfa', 'Cfa022935' => 'cfa', 'Ciclev10019081m.g' => 'ccl', 'Ciclev10025076m.g' => 'ccl', 'Ciclev10030712m.g' => 'ccl', 'Ciclev10033760m.g' => 'ccl', 'CiPaw.05G105600' => 'cil', 'CiPaw.08G136700' => 'cil', 'CiPaw.11G003900' => 'cil', 'CiPaw.11G023700' => 'cil', 'CiPaw.12G003700' => 'cil', 'ClCG06G017100' => 'cla', 'ClCG06G018110' => 'cla', 'ClCG07G008800' => 'cla', 'ClCG07G015330' => 'cla', 'COL.COLO4_13698' => 'col', 'COL.COLO4_16659' => 'col', 'COL.COLO4_21986' => 'col', 'COL.COLO4_24049' => 'col', 'COL.COLO4_29061' => 'col', 'COL.COLO4_29075' => 'col', 'COL.COLO4_30094' => 'col', 'Cpa.g.c33689' => 'cpa', 'Cpa.g.sc108.39' => 'cpa', 'Cpa.g.sc108.41' => 'cpa', 'Cpa.g.sc1163.1' => 'cpa', 'Cpa.g.sc4.155' => 'cpa', 'Cpa.g.sc6.194' => 'cpa', 'CsaV3_1G000340' => 'csa', 'CsaV3_1G001400' => 'csa', 'CsaV3_4G002220' => 'csa', 'CsaV3_4G005370' => 'csa', 'CSS0007487' => 'camsi', 'CSS0008066' => 'camsi', 'CSS0009120' => 'camsi', 'CSS0015512' => 'camsi', 'CSS0022409' => 'camsi', 'CSS0025358' => 'camsi', 'CSS0044547' => 'camsi', 'DCAR_013057' => 'dca', 'DCAR_015058' => 'dca', 'DCAR_016027' => 'dca', 'DCAR_017327' => 'dca', 'DCAR_020743' => 'dca', 'DCAR_026157' => 'dca', 'DCAR_032339' => 'dca', 'DCAR_032340' => 'dca', 'Dinv11200' => 'din', 'Dinv11201' => 'din', 'Dinv20631' => 'din', 'Dinv23182' => 'din', 'Dinv33466' => 'din', 'Dinv33583' => 'din', 'Dinv38565' => 'din', 'Duzib068G0200' => 'dzi', 'Duzib147G0132' => 'dzi', 'Duzib147G0635' => 'dzi', 'Duzib205G1670' => 'dzi', 'Duzib251G0606' => 'dzi', 'ECA232G3336' => 'eca', 'ECA232G3763' => 'eca', 'ECA232G4845' => 'eca', 'ECA234G1607' => 'eca', 'ECA246G0932' => 'eca', 'ECA247G0781' => 'eca', 'ECA247G1932' => 'eca', 'ECA247G2079' => 'eca', 'ECA247G3338' => 'eca', 'ECA247G4115' => 'eca', 'EL10Ac3g06552' => 'bvu', 'EL10Ac5g10721' => 'bvu', 'EL10Ac5g10722' => 'bvu', 'EL10Ac5g10723' => 'bvu', 'EL10Ac5g11361' => 'bvu', 'EL10Ac6g13553' => 'bvu', 'EL10As8g23872' => 'bvu', 'Eucgr.B00250' => 'egr', 'Eucgr.B00251' => 'egr', 'Eucgr.B03533' => 'egr', 'Eucgr.I02381' => 'egr', 'Eucgr.K02700' => 'egr', 'FAN02G0174' => 'fan', 'FAN02G3146' => 'fan', 'FAN04G1672' => 'fan', 'FAN04G2273' => 'fan', 'FAN05G2791' => 'fan', 'FAN05G4035' => 'fan', 'FAN07G0834' => 'fan', 'FAN08G1198' => 'fan', 'FAN09G4182' => 'fan', 'FAN12G0496' => 'fan', 'FAN13G1027' => 'fan', 'FAN13G2951' => 'fan', 'FAN14G0705' => 'fan', 'FAN14G0720' => 'fan', 'FAN17G0201' => 'fan', 'FAN17G2665' => 'fan', 'FAN18G1456' => 'fan', 'FAN18G1525' => 'fan', 'FAN18G3500' => 'fan', 'FAN28G2670' => 'fan', 'FvH4_1g12391' => 'fve', 'FvH4_4g23220' => 'fve', 'FvH4_5g08810' => 'fve', 'FvH4_5g28960' => 'fve', 'FvH4_6g42820' => 'fve', 'FvH4_6g51110' => 'fve', 'Glyma.02G051802' => 'gma', 'Glyma.04G185300' => 'gma', 'Glyma.05G202900' => 'gma', 'Glyma.08G010300' => 'gma', 'Glyma.16G131900' => 'gma', 'Glyma.17G087900' => 'gma', 'Gohir.A07G048600' => 'ghi', 'Gohir.A11G179000' => 'ghi', 'Gohir.A12G140900' => 'ghi', 'Gohir.A12G140950' => 'ghi', 'Gohir.A12G191700' => 'ghi', 'Gohir.A13G086300' => 'ghi', 'Gohir.D07G052900' => 'ghi', 'Gohir.D11G186600' => 'ghi', 'Gohir.D12G145575' => 'ghi', 'Gohir.D12G145650' => 'ghi', 'Gohir.D12G145725' => 'ghi', 'Gohir.D12G194050' => 'ghi', 'Gohir.D13G091800' => 'ghi', 'Gorai.001G055900' => 'gra', 'Gorai.007G198400' => 'gra', 'Gorai.008G157000' => 'gra', 'Gorai.008G157100' => 'gra', 'Gorai.008G208700' => 'gra', 'Gorai.010G138700' => 'gra', 'GSVIVG01000977001' => 'vvi', 'GSVIVG01007708001' => 'vvi', 'GSVIVG01008587001' => 'vvi', 'GSVIVG01018849001' => 'vvi', 'GSVIVG01032432001' => 'vvi', 'HanXRQChr02g0034131' => 'han', 'HanXRQChr02g0035981' => 'han', 'HanXRQChr02g0035991' => 'han', 'HanXRQChr05g0155611' => 'han', 'HanXRQChr05g0155621' => 'han', 'HanXRQChr08g0236501' => 'han', 'HanXRQChr09g0261321' => 'han', 'HanXRQChr09g0272081' => 'han', 'HanXRQChr10g0310741' => 'han', 'HanXRQChr11g0325591' => 'han', 'HanXRQChr12g0385691' => 'han', 'HanXRQChr13g0387801' => 'han', 'HanXRQChr15g0463011' => 'han', 'Haze_03826' => 'cav', 'Haze_03827' => 'cav', 'Haze_07183' => 'cav', 'Haze_07537' => 'cav', 'Haze_07539' => 'cav', 'Haze_12461' => 'cav', 'Haze_16115' => 'cav', 'Haze_16808' => 'cav', 'Haze_18531' => 'cav', 'Hma1.2p1_0046F.1_g026700' => 'hma', 'Hma1.2p1_0046F.1_g026710' => 'hma', 'Hma1.2p1_0168F.1_g074340' => 'hma', 'Hma1.2p1_0266F.1_g107030' => 'hma', 'Hma1.2p1_0266F.1_g107060' => 'hma', 'Hma1.2p1_0275F.1_g110510' => 'hma', 'Hma1.2p1_0592F.1_g185490' => 'hma', 'Hma1.2p1_0592F.1_g185500' => 'hma', 'Hma1.2p1_0592F.1_g185510' => 'hma', 'Hma1.2p1_0592F.1_g185520' => 'hma', 'Hma1.2p1_0592F.1_g185530' => 'hma', 'Hma1.2p1_0818F.1_g223450' => 'hma', 'HPP92_009708' => 'vpl', 'HPP92_009793' => 'vpl', 'HPP92_009796' => 'vpl', 'HPP92_009797' => 'vpl', 'HPP92_014940' => 'vpl', 'HPP92_014988' => 'vpl', 'Hund02463' => 'sun', 'Hund02760' => 'sun', 'Hund05071' => 'sun', 'Hund10108' => 'sun', 'Hund11204' => 'sun', 'Hund14016' => 'sun', 'Hund16464' => 'sun', 'Lalb_Chr09g0333391' => 'lal', 'Lalb_Chr11g0070461' => 'lal', 'Lalb_Chr12g0201671' => 'lal', 'Lalb_Chr13g0297161' => 'lal', 'Lj1g0002823' => 'lja', 'Lj3C1074T6' => 'lonja', 'Lj4A212T28' => 'lonja', 'Lj4g0005516' => 'lja', 'Lj4g0013705' => 'lja', 'Lj4g0027865' => 'lja', 'Lj5C92G16' => 'lonja', 'Lj5C92T12' => 'lonja', 'Lj7C596T3' => 'lonja', 'Lj9A446G59' => 'lonja', 'Lj9A482G21' => 'lonja', 'Lsat_1_v5_gn_1_28261' => 'lsa', 'Lsat_1_v5_gn_1_28281' => 'lsa', 'Lsat_1_v5_gn_1_32721' => 'lsa', 'Lsat_1_v5_gn_4_151760' => 'lsa', 'Lsat_1_v5_gn_4_2120' => 'lsa', 'Lsat_1_v5_gn_4_75761' => 'lsa', 'Lsat_1_v5_gn_5_10920' => 'lsa', 'Manes.02G099900' => 'mes', 'Manes.11G096200' => 'mes', 'Manes.12G007200' => 'mes', 'Manes.14G048300' => 'mes', 'Manes.17G114700' => 'mes', 'Mapoly0002s0070' => 'mpo', 'Mapoly0029s0099' => 'mpo', 'MBI07_g24742_MAGBIO' => 'mbi', 'MBI10_g27988_MAGBIO' => 'mbi', 'MBI11_g13057_MAGBIO' => 'mbi', 'MD02G1137200' => 'mdo', 'MD06G1137200' => 'mdo', 'MD07G1122300' => 'mdo', 'MD09G1078200' => 'mdo', 'MD13G1123700' => 'mdo', 'MD14G1151900' => 'mdo', 'MD17G1030900' => 'mdo', 'MD17G1068200' => 'mdo', 'MD17G1068600' => 'mdo', 'Medtr3g077540' => 'mtr', 'Medtr4g105530' => 'mtr', 'Medtr8g076580' => 'mtr', 'Medtr8g076590' => 'mtr', 'Medtr8g096410' => 'mtr', 'MELO3C016411.2' => 'cme', 'MELO3C017780.2' => 'cme', 'MELO3C022560.2' => 'cme', 'MELO3C026187.2' => 'cme', 'MELO3C026286.2' => 'cme', 'MELO3C032854.2' => 'cme', 'Migut.H02495' => 'egut', 'Migut.I00561' => 'egut', 'Migut.K01015' => 'egut', 'Migut.K01016' => 'egut', 'Migut.L00743' => 'egut', 'Migut.L00744' => 'egut', 'Migut.L00746' => 'egut', 'Migut.L00798' => 'egut', 'Migut.L00799' => 'egut', 'Migut.N02096' => 'egut', 'MSTRG.11259' => 'ama', 'MSTRG.23142' => 'ama', 'MSTRG.2499' => 'ama', 'Nitab4.5_0000003g0730' => 'nta', 'Nitab4.5_0000137g0020' => 'nta', 'Nitab4.5_0000721g0210' => 'nta', 'Nitab4.5_0000723g0050' => 'nta', 'Nitab4.5_0000913g0070' => 'nta', 'Nitab4.5_0001332g0040' => 'nta', 'Nitab4.5_0001771g0050' => 'nta', 'Nitab4.5_0001918g0050' => 'nta', 'Nitab4.5_0002686g0030' => 'nta', 'Nitab4.5_0003156g0020' => 'nta', 'Nitab4.5_0003383g0040' => 'nta', 'Nitab4.5_0003918g0010' => 'nta', 'Nitab4.5_0006760g0010' => 'nta', 'Nn1g05981' => 'nnu', 'Nn1g06288' => 'nnu', 'Nn3g16371' => 'nnu', 'Nn3g16786' => 'nnu', 'Nn4g22232' => 'nnu', 'Oeu005144.1' => 'oeu', 'Oeu005145.1' => 'oeu', 'Oeu011348.1' => 'oeu', 'Oeu016415.1' => 'oeu', 'Oeu023501.1' => 'oeu', 'Oeu044473.1' => 'oeu', 'Oeu048892.2' => 'oeu', 'Os01g0549200' => 'osa', 'Os02g0469300' => 'osa', 'Os04g0311100' => 'osa', 'Os06g0474900' => 'osa', 'Os10g0181700' => 'osa', 'Os11g0454800' => 'osa', 'Peaxi162Scf00037g00714' => 'pax', 'Peaxi162Scf00084g01217' => 'pax', 'Peaxi162Scf00257g00217' => 'pax', 'Peaxi162Scf00516g00215' => 'pax', 'Peaxi162Scf00689g00123' => 'pax', 'PGR044G2719' => 'pgr', 'PGR083G1360' => 'pgr', 'PGR102G2849' => 'pgr', 'PGR119G2534' => 'pgr', 'PGSC0003DMG400003538' => 'stu', 'PGSC0003DMG400028138' => 'stu', 'PGSC0003DMG400031732' => 'stu', 'PGSC0003DMG400038165' => 'stu', 'Phvul.002G284600' => 'pvu', 'Phvul.003G258200' => 'pvu', 'Phvul.009G176500' => 'pvu', 'Potri.003G167201' => 'ptr', 'Potri.005G118400' => 'ptr', 'Potri.012G089000' => 'ptr', 'Potri.012G102800' => 'ptr', 'Potri.015G079400' => 'ptr', 'Potri.015G100900' => 'ptr', 'Pp3c14_9810' => 'ppa', 'Pp3c15_10450' => 'ppa', 'Pp3c20_19150' => 'ppa', 'Pp3c23_12740' => 'ppa', 'Pp3c23_6310' => 'ppa', 'Pp3c24_3720' => 'ppa', 'Pp3c27_2580' => 'ppa', 'Pp3c9_8990' => 'ppa', 'PRCOL_00002854' => 'pco', 'Prupe.1G221200' => 'ppe', 'Prupe.3G289000' => 'ppe', 'Prupe.5G147000' => 'ppe', 'Prupe.6G157300' => 'ppe', 'Prupe.7G163400' => 'ppe', 'Psat0s2177g0040' => 'psa', 'Psat3g174760' => 'psa', 'Psat3g192160' => 'psa', 'Psat4g058520' => 'psa', 'Psat4g096840' => 'psa', 'Psat7g037320' => 'psa', 'PSO017G1274' => 'pso', 'PSO017G5166' => 'pso', 'PSO063G4558' => 'pso', 'PSO170G4458' => 'pso', 'PSO170G5005' => 'pso', 'PSO210G6156' => 'pso', 'PSO210G6635' => 'pso', 'PSO210G7397' => 'pso', 'PSO210G7700' => 'pso', 'PSO455G0035' => 'pso', 'PSO455G0180' => 'pso', 'PSO478G4515' => 'pso', 'PSO832G1305' => 'pso', 'PSO832G3489' => 'pso', 'QL02p075247' => 'qlo', 'QL03p051148' => 'qlo', 'QL05p010313' => 'qlo', 'QL06p034627' => 'qlo', 'QL10p001889' => 'qlo', 'QL10p010846' => 'qlo', 'RcHm_v2.0_Chr1g0350621' => 'rch', 'RcHm_v2.0_Chr1g0350641' => 'rch', 'RcHm_v2.0_Chr2g0092891' => 'rch', 'RcHm_v2.0_Chr2g0100251' => 'rch', 'RcHm_v2.0_Chr2g0158661' => 'rch', 'RcHm_v2.0_Chr2g0172741' => 'rch', 'RcHm_v2.0_Chr4g0429571' => 'rch', 'RcHm_v2.0_Chr5g0042471' => 'rch', 'RcHm_v2.0_Chr7g0189451' => 'rch', 'Rhsim08G0052000' => 'rsi', 'Rhsim08G0174400' => 'rsi', 'Rhsim08G0193200' => 'rsi', 'Rhsim10G0214800' => 'rsi', 'Rhsim10G0214900' => 'rsi', 'Rhsim10G0215000' => 'rsi', 'Rhsim12G0022900' => 'rsi', 'Rhsim12G0177500' => 'rsi', 'Rhsim12G0177700' => 'rsi', 'Sabra03G0122600' => 'sbr', 'Sabra05G0097400' => 'sbr', 'Sabra12G0064100' => 'sbr', 'Sabra15G0121300' => 'sbr', 'SalBow2G0642' => 'sbo', 'SalBow5G2667' => 'sbo', 'SalBow5G4873' => 'sbo', 'SalBow8G2395' => 'sbo', 'Sc03g0003290' => 'sci', 'Sc10g0010130' => 'sci', 'Sc22g0003650' => 'sci', 'Sed0001603' => 'sed', 'Sed0004259' => 'sed', 'Sed0006789' => 'sed', 'Sed0011838' => 'sed', 'Sed0012964' => 'sed', 'Sed0016383' => 'sed', 'Sed0019010' => 'sed', 'Sed0020188' => 'sed', 'SEGI_04702' => 'sgi', 'SEGI_17231' => 'sgi', 'SEGI_18877' => 'sgi', 'SEGI_25196' => 'sgi', 'SEGI_25515' => 'sgi', 'SEGI_28445' => 'sgi', 'SEGI_37452' => 'sgi', 'SGA_v2.0_scaffold188G40336' => 'sas', 'SGA_v2.0_scaffold228G43247' => 'sas', 'SGA_v2.0_scaffold280G46853' => 'sas', 'SGA_v2.0_scaffold34G13808' => 'sas', 'SGA_v2.0_scaffold40G15576' => 'sas', 'SGA_v2.0_scaffold611G53188' => 'sas', 'SGA_v2.0_scaffold78G25461' => 'sas', 'SGA_v2.0_scaffold90G27888' => 'sas', 'SHI08601' => 'shi', 'SHI08606' => 'shi', 'SHI17117' => 'shi', 'SHI17119' => 'shi', 'SMO118G0201' => 'smo', 'SMO169G0247' => 'smo', 'SMO176G0006' => 'smo', 'SMO176G0015' => 'smo', 'SMO202G0006' => 'smo', 'SMO240G0050' => 'smo', 'SMO286G0009' => 'smo', 'SMO338G0033' => 'smo', 'SMO356G0533' => 'smo', 'SMO364G0382' => 'smo', 'SMO367G0166' => 'smo', 'SMO367G1098' => 'smo', 'Solyc01g009920.3' => 'sly', 'Solyc01g099300.3' => 'sly', 'Solyc02g084700.3' => 'sly', 'Solyc03g097520.3' => 'sly', 'Solyc06g071580.3' => 'sly', 'Solyc10g081760.3' => 'sly', 'Sopen01g005480' => 'spe', 'Sopen01g042850' => 'spe', 'Sopen02g029370' => 'spe', 'Sopen03g028280' => 'spe', 'Sopen06g027870' => 'spe', 'Sopen10g032270' => 'spe', 'Sp5g18180' => 'spa', 'Sp6g12880' => 'spa', 'Sp6g30850' => 'spa', 'Sp7g22960' => 'spa', 'Sp7g34010' => 'spa', 'SpUn1326_0010' => 'spa', 'TAR371G0242' => 'tar', 'TAR622G0638' => 'tar', 'TAR628G1548' => 'tar', 'TAR629G1079' => 'tar', 'TAR629G3413' => 'tar', 'THA.LOC104804249' => 'tha', 'THA.LOC104808315' => 'tha', 'THA.LOC104809238' => 'tha', 'THA.LOC104825484' => 'tha', 'Thecc.01G025500' => 'tca', 'Thecc.03G015800' => 'tca', 'Thecc.03G018000' => 'tca', 'Thecc.03G134800' => 'tca', 'Thecc.04G014700' => 'tca', 'Thhalv10006991m.g' => 'esa', 'Thhalv10012707m.g' => 'esa', 'Thhalv10015739m.g' => 'esa', 'Thhalv10024553m.g' => 'esa', 'Thhalv10024673m.g' => 'esa', 'Thhalv10029187m.g' => 'esa', 'TPR.G12971' => 'tpr', 'TPR.G29396' => 'tpr', 'TPR.G33376' => 'tpr', 'TPR.G35508' => 'tpr', 'TPR.G35516' => 'tpr', 'TPR.G37317' => 'tpr', 'TPR.G37389' => 'tpr', 'TPR.G37523' => 'tpr', 'TPR.G559' => 'tpr', 'TWI14G0070' => 'twi', 'TWI14G0729' => 'twi', 'TWI18G0596' => 'twi', 'TWI39G0780' => 'twi', 'TWI39G0850' => 'twi', 'TWI73G1052' => 'twi', 'unitig_52.g17485' => 'ugi', 'unitig_61.g26355' => 'ugi', 'vmacro01040' => 'vma', 'vmacro16731' => 'vma', 'vmacro18270' => 'vma', 'vmacro19142' => 'vma', 'vmacro19407' => 'vma', 'vmacro19408' => 'vma', 'vmacro21899' => 'vma', 'vmacro21900' => 'vma', 'vmacro21901' => 'vma', 'VMungo0251G0490' => 'vmu', 'VMungo0251G1748' => 'vmu', 'VMungo1309G0421' => 'vmu', 'Zm00001eb086500' => 'zma', 'Zm00001eb150680' => 'zma', 'Zm00001eb162330' => 'zma', 'Zm00001eb203130' => 'zma', 'Zm00001eb369480' => 'zma', 'Zm00001eb382340' => 'zma', 'Zm00001eb416360' => 'zma' ), 'gf_id' => 'HOM05D000902', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000902' ), 'data_identifier' => 'HOM05D000902', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000902', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '663', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02470' => 'bna', 'A01p16260' => 'bna', 'A02p01680' => 'bna', 'A03p16600' => 'bna', 'A03p55660' => 'bna', 'A03p64160' => 'bna', 'A03p64170' => 'bna', 'A08p31900' => 'bna', 'A09p59530' => 'bna', 'A10p08230' => 'bna', 'A10p25090' => 'bna', 'Aa31LG3G7100' => 'aar', 'Aa31LG3G7110' => 'aar', 'Aa31LG6G13160' => 'aar', 'Aa31LG7G10770' => 'aar', 'Aa31LG7G3830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2723' => 'aag', 'Actinidia08045' => 'ach', 'Actinidia08888' => 'ach', 'Actinidia18333' => 'ach', 'Actinidia19334' => 'ach', 'Actinidia25552' => 'ach', 'Actinidia26089' => 'ach', 'Actinidia30615' => 'ach', 'Actinidia30616' => 'ach', 'Actinidia33083' => 'ach', 'Actinidia35762' => 'ach', 'Ah.02g110620' => 'amhyb', 'Ah.11g046390' => 'amhyb', 'AL1G31670' => 'aly', 'AL6G23730' => 'aly', 'AL7G14740' => 'aly', 'AL7G14750' => 'aly', 'AL7G14760' => 'aly', 'AL7G28220' => 'aly', 'AL8G24940' => 'aly', 'Aqoxy3G01665' => 'aox', 'Aqoxy3G02853' => 'aox', 'Aqoxy5G01513' => 'aox', 'Aqoxy5G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8SKA4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ75LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKDA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0LJZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7REX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZP4YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWX7I5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2QKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS0L9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPCD8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q161UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC7XCF' => 'arhy', 'AT1G19100' => 'ath', 'AT4G24970' => 'ath', 'AT4G36270' => 'ath', 'AT4G36280' => 'ath', 'AT4G36290' => 'ath', 'AT5G13130' => 'ath', 'AT5G50780' => 'ath', 'ATR0582G266' => 'atr', 'ATR0661G195' => 'atr', 'ATR1152G031' => 'atr', 'Atru.chr11.2382' => 'acertr', 'Atru.chr12.2337' => 'acertr', 'Atru.chr3.744' => 'acertr', 'Atru.chr6.1870' => 'acertr', 'Atru.chr9.2515' => 'acertr', 'AUR62004120' => 'cqu', 'AUR62005667' => 'cqu', 'AUR62007634' => 'cqu', 'AUR62008186' => 'cqu', 'AUR62008187' => 'cqu', 'AUR62008188' => 'cqu', 'AUR62027954' => 'cqu', 'AUR62028766' => 'cqu', 'AUR62028767' => 'cqu', 'AUR62028768' => 'cqu', 'AUR62028886' => 'cqu', 'AUR62029563' => 'cqu', 'AUR62038832' => 'cqu', 'BcaB01g04149' => 'bca', 'BcaB03g12940' => 'bca', 'BcaB03g13090' => 'bca', 'BcaB03g14466' => 'bca', 'BcaB05g24035' => 'bca', 'BcaC01g06050' => 'bca', 'BcaC04g19148' => 'bca', 'BcaC04g20761' => 'bca', 'BcaC06g32845' => 'bca', 'BcaC07g41274' => 'bca', 'BcaC09g50827' => 'bca', 'BcaNung00741' => 'bca', 'BcaNung00742' => 'bca', 'BcaNung01859' => 'bca', 'BcaNung03985' => 'bca', 'BcaNung03989' => 'bca', 'BcaNung05661' => 'bca', 'BolC1t00257H' => 'bol', 'BolC1t01956H' => 'bol', 'BolC2t06534H' => 'bol', 'BolC3t14334H' => 'bol', 'BolC5t30451H' => 'bol', 'BolC7t45880H' => 'bol', 'BolC7t46586H' => 'bol', 'BolC8t49301H' => 'bol', 'BolC8t51837H' => 'bol', 'BolC9t56822H' => 'bol', 'BolC9t59235H' => 'bol', 'BraA01t00234Z' => 'bra', 'BraA01t01563Z' => 'bra', 'BraA02t05147Z' => 'bra', 'BraA03t10947Z' => 'bra', 'BraA03t14633Z' => 'bra', 'BraA08t35112Z' => 'bra', 'BraA09t41330Z' => 'bra', 'BraA10t44570Z' => 'bra', 'C01p02670' => 'bna', 'C01p20260' => 'bna', 'C02p05890' => 'bna', 'C03p19530' => 'bna', 'C05p17470' => 'bna', 'C07p53900' => 'bna', 'C07p61630' => 'bna', 'C08p16800' => 'bna', 'C08p42810' => 'bna', 'C09p39480' => 'bna', 'C09p63980' => 'bna', 'CAN.G1001.7' => 'can', 'CAN.G1034.55' => 'can', 'CAN.G143.7' => 'can', 'CAN.G3340.1' => 'can', 'CAN.G358.19' => 'can', 'CAN.G373.2' => 'can', 'CAN.G674.16' => 'can', 'CAN.G674.17' => 'can', 'CAN.G674.18' => 'can', 'CAN.G732.2' => 'can', 'CAN.G732.3' => 'can', 'CAN.G993.39' => 'can', 'CANSAT01G2052' => 'cansat', 'CANSAT80G0070' => 'cansat', 'CANSAT80G0483' => 'cansat', 'CANSAT80G0625' => 'cansat', 'CARHR019690' => 'chi', 'CARHR080280' => 'chi', 'CARHR152750' => 'chi', 'CARHR152760' => 'chi', 'CARHR152770' => 'chi', 'CARHR200340' => 'chi', 'CARHR232370' => 'chi', 'CARHR244670' => 'chi', 'CARHR244680' => 'chi', 'CARHR257520' => 'chi', 'Carub.0001s1872' => 'cru', 'Carub.0006s1130' => 'cru', 'Carub.0007s0396' => 'cru', 'Carub.0007s0397' => 'cru', 'Carub.0007s1608' => 'cru', 'Carub.0008s1068' => 'cru', 'Carub.0008s1077' => 'cru', 'Ca_16158_v3' => 'car', 'Ca_17571_v3' => 'car', 'Ca_21936_v3' => 'car', 'Ca_22350_v3' => 'car', 'CBR_g22445' => 'cbr', 'CBR_g26290' => 'cbr', 'Cc04_g09610' => 'ccan', 'Cc04_g12280' => 'ccan', 'Cc07_g10230' => 'ccan', 'CDE02G0093' => 'cde', 'CDE02G0701' => 'cde', 'CDE04G1050' => 'cde', 'CDE05G1833' => 'cde', 'CDE05G3058' => 'cde', 'CDE05G3380' => 'cde', 'CDE06G0536' => 'cde', 'Cfa006923' => 'cfa', 'Cfa009402' => 'cfa', 'Cfa018751' => 'cfa', 'Cfa019164' => 'cfa', 'Cfa022935' => 'cfa', 'Ciclev10019081m.g' => 'ccl', 'Ciclev10025076m.g' => 'ccl', 'Ciclev10030712m.g' => 'ccl', 'Ciclev10033760m.g' => 'ccl', 'CiPaw.05G105600' => 'cil', 'CiPaw.08G136700' => 'cil', 'CiPaw.11G003900' => 'cil', 'CiPaw.11G023700' => 'cil', 'CiPaw.12G003700' => 'cil', 'ClCG06G017100' => 'cla', 'ClCG06G018110' => 'cla', 'ClCG07G008800' => 'cla', 'ClCG07G015330' => 'cla', 'COL.COLO4_13698' => 'col', 'COL.COLO4_16659' => 'col', 'COL.COLO4_21986' => 'col', 'COL.COLO4_24049' => 'col', 'COL.COLO4_29061' => 'col', 'COL.COLO4_29075' => 'col', 'COL.COLO4_30094' => 'col', 'Cpa.g.c33689' => 'cpa', 'Cpa.g.sc108.39' => 'cpa', 'Cpa.g.sc108.41' => 'cpa', 'Cpa.g.sc1163.1' => 'cpa', 'Cpa.g.sc4.155' => 'cpa', 'Cpa.g.sc6.194' => 'cpa', 'CsaV3_1G000340' => 'csa', 'CsaV3_1G001400' => 'csa', 'CsaV3_4G002220' => 'csa', 'CsaV3_4G005370' => 'csa', 'CSS0007487' => 'camsi', 'CSS0008066' => 'camsi', 'CSS0009120' => 'camsi', 'CSS0015512' => 'camsi', 'CSS0022409' => 'camsi', 'CSS0025358' => 'camsi', 'CSS0044547' => 'camsi', 'DCAR_013057' => 'dca', 'DCAR_015058' => 'dca', 'DCAR_016027' => 'dca', 'DCAR_017327' => 'dca', 'DCAR_020743' => 'dca', 'DCAR_026157' => 'dca', 'DCAR_032339' => 'dca', 'DCAR_032340' => 'dca', 'Dinv11200' => 'din', 'Dinv11201' => 'din', 'Dinv20631' => 'din', 'Dinv23182' => 'din', 'Dinv33466' => 'din', 'Dinv33583' => 'din', 'Dinv38565' => 'din', 'Duzib068G0200' => 'dzi', 'Duzib147G0132' => 'dzi', 'Duzib147G0635' => 'dzi', 'Duzib205G1670' => 'dzi', 'Duzib251G0606' => 'dzi', 'ECA232G3336' => 'eca', 'ECA232G3763' => 'eca', 'ECA232G4845' => 'eca', 'ECA234G1607' => 'eca', 'ECA246G0932' => 'eca', 'ECA247G0781' => 'eca', 'ECA247G1932' => 'eca', 'ECA247G2079' => 'eca', 'ECA247G3338' => 'eca', 'ECA247G4115' => 'eca', 'EL10Ac3g06552' => 'bvu', 'EL10Ac5g10721' => 'bvu', 'EL10Ac5g10722' => 'bvu', 'EL10Ac5g10723' => 'bvu', 'EL10Ac5g11361' => 'bvu', 'EL10Ac6g13553' => 'bvu', 'EL10As8g23872' => 'bvu', 'Eucgr.B00250' => 'egr', 'Eucgr.B00251' => 'egr', 'Eucgr.B03533' => 'egr', 'Eucgr.I02381' => 'egr', 'Eucgr.K02700' => 'egr', 'FAN02G0174' => 'fan', 'FAN02G3146' => 'fan', 'FAN04G1672' => 'fan', 'FAN04G2273' => 'fan', 'FAN05G2791' => 'fan', 'FAN05G4035' => 'fan', 'FAN07G0834' => 'fan', 'FAN08G1198' => 'fan', 'FAN09G4182' => 'fan', 'FAN12G0496' => 'fan', 'FAN13G1027' => 'fan', 'FAN13G2951' => 'fan', 'FAN14G0705' => 'fan', 'FAN14G0720' => 'fan', 'FAN17G0201' => 'fan', 'FAN17G2665' => 'fan', 'FAN18G1456' => 'fan', 'FAN18G1525' => 'fan', 'FAN18G3500' => 'fan', 'FAN28G2670' => 'fan', 'FvH4_1g12391' => 'fve', 'FvH4_4g23220' => 'fve', 'FvH4_5g08810' => 'fve', 'FvH4_5g28960' => 'fve', 'FvH4_6g42820' => 'fve', 'FvH4_6g51110' => 'fve', 'Glyma.02G051802' => 'gma', 'Glyma.04G185300' => 'gma', 'Glyma.05G202900' => 'gma', 'Glyma.08G010300' => 'gma', 'Glyma.16G131900' => 'gma', 'Glyma.17G087900' => 'gma', 'Gohir.A07G048600' => 'ghi', 'Gohir.A11G179000' => 'ghi', 'Gohir.A12G140900' => 'ghi', 'Gohir.A12G140950' => 'ghi', 'Gohir.A12G191700' => 'ghi', 'Gohir.A13G086300' => 'ghi', 'Gohir.D07G052900' => 'ghi', 'Gohir.D11G186600' => 'ghi', 'Gohir.D12G145575' => 'ghi', 'Gohir.D12G145650' => 'ghi', 'Gohir.D12G145725' => 'ghi', 'Gohir.D12G194050' => 'ghi', 'Gohir.D13G091800' => 'ghi', 'Gorai.001G055900' => 'gra', 'Gorai.007G198400' => 'gra', 'Gorai.008G157000' => 'gra', 'Gorai.008G157100' => 'gra', 'Gorai.008G208700' => 'gra', 'Gorai.010G138700' => 'gra', 'GSVIVG01000977001' => 'vvi', 'GSVIVG01007708001' => 'vvi', 'GSVIVG01008587001' => 'vvi', 'GSVIVG01018849001' => 'vvi', 'GSVIVG01032432001' => 'vvi', 'HanXRQChr02g0034131' => 'han', 'HanXRQChr02g0035981' => 'han', 'HanXRQChr02g0035991' => 'han', 'HanXRQChr05g0155611' => 'han', 'HanXRQChr05g0155621' => 'han', 'HanXRQChr08g0236501' => 'han', 'HanXRQChr09g0261321' => 'han', 'HanXRQChr09g0272081' => 'han', 'HanXRQChr10g0310741' => 'han', 'HanXRQChr11g0325591' => 'han', 'HanXRQChr12g0385691' => 'han', 'HanXRQChr13g0387801' => 'han', 'HanXRQChr15g0463011' => 'han', 'Haze_03826' => 'cav', 'Haze_03827' => 'cav', 'Haze_07183' => 'cav', 'Haze_07537' => 'cav', 'Haze_07539' => 'cav', 'Haze_12461' => 'cav', 'Haze_16115' => 'cav', 'Haze_16808' => 'cav', 'Haze_18531' => 'cav', 'Hma1.2p1_0046F.1_g026700' => 'hma', 'Hma1.2p1_0046F.1_g026710' => 'hma', 'Hma1.2p1_0168F.1_g074340' => 'hma', 'Hma1.2p1_0266F.1_g107030' => 'hma', 'Hma1.2p1_0266F.1_g107060' => 'hma', 'Hma1.2p1_0275F.1_g110510' => 'hma', 'Hma1.2p1_0592F.1_g185490' => 'hma', 'Hma1.2p1_0592F.1_g185500' => 'hma', 'Hma1.2p1_0592F.1_g185510' => 'hma', 'Hma1.2p1_0592F.1_g185520' => 'hma', 'Hma1.2p1_0592F.1_g185530' => 'hma', 'Hma1.2p1_0818F.1_g223450' => 'hma', 'HPP92_009708' => 'vpl', 'HPP92_009793' => 'vpl', 'HPP92_009796' => 'vpl', 'HPP92_009797' => 'vpl', 'HPP92_014940' => 'vpl', 'HPP92_014988' => 'vpl', 'Hund02463' => 'sun', 'Hund02760' => 'sun', 'Hund05071' => 'sun', 'Hund10108' => 'sun', 'Hund11204' => 'sun', 'Hund14016' => 'sun', 'Hund16464' => 'sun', 'Lalb_Chr09g0333391' => 'lal', 'Lalb_Chr11g0070461' => 'lal', 'Lalb_Chr12g0201671' => 'lal', 'Lalb_Chr13g0297161' => 'lal', 'Lj1g0002823' => 'lja', 'Lj3C1074T6' => 'lonja', 'Lj4A212T28' => 'lonja', 'Lj4g0005516' => 'lja', 'Lj4g0013705' => 'lja', 'Lj4g0027865' => 'lja', 'Lj5C92G16' => 'lonja', 'Lj5C92T12' => 'lonja', 'Lj7C596T3' => 'lonja', 'Lj9A446G59' => 'lonja', 'Lj9A482G21' => 'lonja', 'Lsat_1_v5_gn_1_28261' => 'lsa', 'Lsat_1_v5_gn_1_28281' => 'lsa', 'Lsat_1_v5_gn_1_32721' => 'lsa', 'Lsat_1_v5_gn_4_151760' => 'lsa', 'Lsat_1_v5_gn_4_2120' => 'lsa', 'Lsat_1_v5_gn_4_75761' => 'lsa', 'Lsat_1_v5_gn_5_10920' => 'lsa', 'Manes.02G099900' => 'mes', 'Manes.11G096200' => 'mes', 'Manes.12G007200' => 'mes', 'Manes.14G048300' => 'mes', 'Manes.17G114700' => 'mes', 'Mapoly0002s0070' => 'mpo', 'Mapoly0029s0099' => 'mpo', 'MBI07_g24742_MAGBIO' => 'mbi', 'MBI10_g27988_MAGBIO' => 'mbi', 'MBI11_g13057_MAGBIO' => 'mbi', 'MD02G1137200' => 'mdo', 'MD06G1137200' => 'mdo', 'MD07G1122300' => 'mdo', 'MD09G1078200' => 'mdo', 'MD13G1123700' => 'mdo', 'MD14G1151900' => 'mdo', 'MD17G1030900' => 'mdo', 'MD17G1068200' => 'mdo', 'MD17G1068600' => 'mdo', 'Medtr3g077540' => 'mtr', 'Medtr4g105530' => 'mtr', 'Medtr8g076580' => 'mtr', 'Medtr8g076590' => 'mtr', 'Medtr8g096410' => 'mtr', 'MELO3C016411.2' => 'cme', 'MELO3C017780.2' => 'cme', 'MELO3C022560.2' => 'cme', 'MELO3C026187.2' => 'cme', 'MELO3C026286.2' => 'cme', 'MELO3C032854.2' => 'cme', 'Migut.H02495' => 'egut', 'Migut.I00561' => 'egut', 'Migut.K01015' => 'egut', 'Migut.K01016' => 'egut', 'Migut.L00743' => 'egut', 'Migut.L00744' => 'egut', 'Migut.L00746' => 'egut', 'Migut.L00798' => 'egut', 'Migut.L00799' => 'egut', 'Migut.N02096' => 'egut', 'MSTRG.11259' => 'ama', 'MSTRG.23142' => 'ama', 'MSTRG.2499' => 'ama', 'Nitab4.5_0000003g0730' => 'nta', 'Nitab4.5_0000137g0020' => 'nta', 'Nitab4.5_0000721g0210' => 'nta', 'Nitab4.5_0000723g0050' => 'nta', 'Nitab4.5_0000913g0070' => 'nta', 'Nitab4.5_0001332g0040' => 'nta', 'Nitab4.5_0001771g0050' => 'nta', 'Nitab4.5_0001918g0050' => 'nta', 'Nitab4.5_0002686g0030' => 'nta', 'Nitab4.5_0003156g0020' => 'nta', 'Nitab4.5_0003383g0040' => 'nta', 'Nitab4.5_0003918g0010' => 'nta', 'Nitab4.5_0006760g0010' => 'nta', 'Nn1g05981' => 'nnu', 'Nn1g06288' => 'nnu', 'Nn3g16371' => 'nnu', 'Nn3g16786' => 'nnu', 'Nn4g22232' => 'nnu', 'Oeu005144.1' => 'oeu', 'Oeu005145.1' => 'oeu', 'Oeu011348.1' => 'oeu', 'Oeu016415.1' => 'oeu', 'Oeu023501.1' => 'oeu', 'Oeu044473.1' => 'oeu', 'Oeu048892.2' => 'oeu', 'Os01g0549200' => 'osa', 'Os02g0469300' => 'osa', 'Os04g0311100' => 'osa', 'Os06g0474900' => 'osa', 'Os10g0181700' => 'osa', 'Os11g0454800' => 'osa', 'Peaxi162Scf00037g00714' => 'pax', 'Peaxi162Scf00084g01217' => 'pax', 'Peaxi162Scf00257g00217' => 'pax', 'Peaxi162Scf00516g00215' => 'pax', 'Peaxi162Scf00689g00123' => 'pax', 'PGR044G2719' => 'pgr', 'PGR083G1360' => 'pgr', 'PGR102G2849' => 'pgr', 'PGR119G2534' => 'pgr', 'PGSC0003DMG400003538' => 'stu', 'PGSC0003DMG400028138' => 'stu', 'PGSC0003DMG400031732' => 'stu', 'PGSC0003DMG400038165' => 'stu', 'Phvul.002G284600' => 'pvu', 'Phvul.003G258200' => 'pvu', 'Phvul.009G176500' => 'pvu', 'Potri.003G167201' => 'ptr', 'Potri.005G118400' => 'ptr', 'Potri.012G089000' => 'ptr', 'Potri.012G102800' => 'ptr', 'Potri.015G079400' => 'ptr', 'Potri.015G100900' => 'ptr', 'Pp3c14_9810' => 'ppa', 'Pp3c15_10450' => 'ppa', 'Pp3c20_19150' => 'ppa', 'Pp3c23_12740' => 'ppa', 'Pp3c23_6310' => 'ppa', 'Pp3c24_3720' => 'ppa', 'Pp3c27_2580' => 'ppa', 'Pp3c9_8990' => 'ppa', 'PRCOL_00002854' => 'pco', 'Prupe.1G221200' => 'ppe', 'Prupe.3G289000' => 'ppe', 'Prupe.5G147000' => 'ppe', 'Prupe.6G157300' => 'ppe', 'Prupe.7G163400' => 'ppe', 'Psat0s2177g0040' => 'psa', 'Psat3g174760' => 'psa', 'Psat3g192160' => 'psa', 'Psat4g058520' => 'psa', 'Psat4g096840' => 'psa', 'Psat7g037320' => 'psa', 'PSO017G1274' => 'pso', 'PSO017G5166' => 'pso', 'PSO063G4558' => 'pso', 'PSO170G4458' => 'pso', 'PSO170G5005' => 'pso', 'PSO210G6156' => 'pso', 'PSO210G6635' => 'pso', 'PSO210G7397' => 'pso', 'PSO210G7700' => 'pso', 'PSO455G0035' => 'pso', 'PSO455G0180' => 'pso', 'PSO478G4515' => 'pso', 'PSO832G1305' => 'pso', 'PSO832G3489' => 'pso', 'QL02p075247' => 'qlo', 'QL03p051148' => 'qlo', 'QL05p010313' => 'qlo', 'QL06p034627' => 'qlo', 'QL10p001889' => 'qlo', 'QL10p010846' => 'qlo', 'RcHm_v2.0_Chr1g0350621' => 'rch', 'RcHm_v2.0_Chr1g0350641' => 'rch', 'RcHm_v2.0_Chr2g0092891' => 'rch', 'RcHm_v2.0_Chr2g0100251' => 'rch', 'RcHm_v2.0_Chr2g0158661' => 'rch', 'RcHm_v2.0_Chr2g0172741' => 'rch', 'RcHm_v2.0_Chr4g0429571' => 'rch', 'RcHm_v2.0_Chr5g0042471' => 'rch', 'RcHm_v2.0_Chr7g0189451' => 'rch', 'Rhsim08G0052000' => 'rsi', 'Rhsim08G0174400' => 'rsi', 'Rhsim08G0193200' => 'rsi', 'Rhsim10G0214800' => 'rsi', 'Rhsim10G0214900' => 'rsi', 'Rhsim10G0215000' => 'rsi', 'Rhsim12G0022900' => 'rsi', 'Rhsim12G0177500' => 'rsi', 'Rhsim12G0177700' => 'rsi', 'Sabra03G0122600' => 'sbr', 'Sabra05G0097400' => 'sbr', 'Sabra12G0064100' => 'sbr', 'Sabra15G0121300' => 'sbr', 'SalBow2G0642' => 'sbo', 'SalBow5G2667' => 'sbo', 'SalBow5G4873' => 'sbo', 'SalBow8G2395' => 'sbo', 'Sc03g0003290' => 'sci', 'Sc10g0010130' => 'sci', 'Sc22g0003650' => 'sci', 'Sed0001603' => 'sed', 'Sed0004259' => 'sed', 'Sed0006789' => 'sed', 'Sed0011838' => 'sed', 'Sed0012964' => 'sed', 'Sed0016383' => 'sed', 'Sed0019010' => 'sed', 'Sed0020188' => 'sed', 'SEGI_04702' => 'sgi', 'SEGI_17231' => 'sgi', 'SEGI_18877' => 'sgi', 'SEGI_25196' => 'sgi', 'SEGI_25515' => 'sgi', 'SEGI_28445' => 'sgi', 'SEGI_37452' => 'sgi', 'SGA_v2.0_scaffold188G40336' => 'sas', 'SGA_v2.0_scaffold228G43247' => 'sas', 'SGA_v2.0_scaffold280G46853' => 'sas', 'SGA_v2.0_scaffold34G13808' => 'sas', 'SGA_v2.0_scaffold40G15576' => 'sas', 'SGA_v2.0_scaffold611G53188' => 'sas', 'SGA_v2.0_scaffold78G25461' => 'sas', 'SGA_v2.0_scaffold90G27888' => 'sas', 'SHI08601' => 'shi', 'SHI08606' => 'shi', 'SHI17117' => 'shi', 'SHI17119' => 'shi', 'SMO118G0201' => 'smo', 'SMO169G0247' => 'smo', 'SMO176G0006' => 'smo', 'SMO176G0015' => 'smo', 'SMO202G0006' => 'smo', 'SMO240G0050' => 'smo', 'SMO286G0009' => 'smo', 'SMO338G0033' => 'smo', 'SMO356G0533' => 'smo', 'SMO364G0382' => 'smo', 'SMO367G0166' => 'smo', 'SMO367G1098' => 'smo', 'Solyc01g009920.3' => 'sly', 'Solyc01g099300.3' => 'sly', 'Solyc02g084700.3' => 'sly', 'Solyc03g097520.3' => 'sly', 'Solyc06g071580.3' => 'sly', 'Solyc10g081760.3' => 'sly', 'Sopen01g005480' => 'spe', 'Sopen01g042850' => 'spe', 'Sopen02g029370' => 'spe', 'Sopen03g028280' => 'spe', 'Sopen06g027870' => 'spe', 'Sopen10g032270' => 'spe', 'Sp5g18180' => 'spa', 'Sp6g12880' => 'spa', 'Sp6g30850' => 'spa', 'Sp7g22960' => 'spa', 'Sp7g34010' => 'spa', 'SpUn1326_0010' => 'spa', 'TAR371G0242' => 'tar', 'TAR622G0638' => 'tar', 'TAR628G1548' => 'tar', 'TAR629G1079' => 'tar', 'TAR629G3413' => 'tar', 'THA.LOC104804249' => 'tha', 'THA.LOC104808315' => 'tha', 'THA.LOC104809238' => 'tha', 'THA.LOC104825484' => 'tha', 'Thecc.01G025500' => 'tca', 'Thecc.03G015800' => 'tca', 'Thecc.03G018000' => 'tca', 'Thecc.03G134800' => 'tca', 'Thecc.04G014700' => 'tca', 'Thhalv10006991m.g' => 'esa', 'Thhalv10012707m.g' => 'esa', 'Thhalv10015739m.g' => 'esa', 'Thhalv10024553m.g' => 'esa', 'Thhalv10024673m.g' => 'esa', 'Thhalv10029187m.g' => 'esa', 'TPR.G12971' => 'tpr', 'TPR.G29396' => 'tpr', 'TPR.G33376' => 'tpr', 'TPR.G35508' => 'tpr', 'TPR.G35516' => 'tpr', 'TPR.G37317' => 'tpr', 'TPR.G37389' => 'tpr', 'TPR.G37523' => 'tpr', 'TPR.G559' => 'tpr', 'TWI14G0070' => 'twi', 'TWI14G0729' => 'twi', 'TWI18G0596' => 'twi', 'TWI39G0780' => 'twi', 'TWI39G0850' => 'twi', 'TWI73G1052' => 'twi', 'unitig_52.g17485' => 'ugi', 'unitig_61.g26355' => 'ugi', 'vmacro01040' => 'vma', 'vmacro16731' => 'vma', 'vmacro18270' => 'vma', 'vmacro19142' => 'vma', 'vmacro19407' => 'vma', 'vmacro19408' => 'vma', 'vmacro21899' => 'vma', 'vmacro21900' => 'vma', 'vmacro21901' => 'vma', 'VMungo0251G0490' => 'vmu', 'VMungo0251G1748' => 'vmu', 'VMungo1309G0421' => 'vmu', 'Zm00001eb086500' => 'zma', 'Zm00001eb150680' => 'zma', 'Zm00001eb162330' => 'zma', 'Zm00001eb203130' => 'zma', 'Zm00001eb369480' => 'zma', 'Zm00001eb382340' => 'zma', 'Zm00001eb416360' => 'zma' ) $gf_id = 'HOM05D000902' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000902' ) $data_identifier = 'HOM05D000902' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 13, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 10, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 6, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 9, 'hma' => (int) 12, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 4, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 6, 'ppa' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 6, 'rch' => (int) 9, 'rsi' => (int) 9, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 12, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 3, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416360' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000902', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '663', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02470' => 'bna', 'A01p16260' => 'bna', 'A02p01680' => 'bna', 'A03p16600' => 'bna', 'A03p55660' => 'bna', 'A03p64160' => 'bna', 'A03p64170' => 'bna', 'A08p31900' => 'bna', 'A09p59530' => 'bna', 'A10p08230' => 'bna', 'A10p25090' => 'bna', 'Aa31LG3G7100' => 'aar', 'Aa31LG3G7110' => 'aar', 'Aa31LG6G13160' => 'aar', 'Aa31LG7G10770' => 'aar', 'Aa31LG7G3830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2723' => 'aag', 'Actinidia08045' => 'ach', 'Actinidia08888' => 'ach', 'Actinidia18333' => 'ach', 'Actinidia19334' => 'ach', 'Actinidia25552' => 'ach', 'Actinidia26089' => 'ach', 'Actinidia30615' => 'ach', 'Actinidia30616' => 'ach', 'Actinidia33083' => 'ach', 'Actinidia35762' => 'ach', 'Ah.02g110620' => 'amhyb', 'Ah.11g046390' => 'amhyb', 'AL1G31670' => 'aly', 'AL6G23730' => 'aly', 'AL7G14740' => 'aly', 'AL7G14750' => 'aly', 'AL7G14760' => 'aly', 'AL7G28220' => 'aly', 'AL8G24940' => 'aly', 'Aqoxy3G01665' => 'aox', 'Aqoxy3G02853' => 'aox', 'Aqoxy5G01513' => 'aox', 'Aqoxy5G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8SKA4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ75LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKDA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0LJZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7REX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZP4YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWX7I5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2QKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS0L9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPCD8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q161UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC7XCF' => 'arhy', 'AT1G19100' => 'ath', 'AT4G24970' => 'ath', 'AT4G36270' => 'ath', 'AT4G36280' => 'ath', 'AT4G36290' => 'ath', 'AT5G13130' => 'ath', 'AT5G50780' => 'ath', 'ATR0582G266' => 'atr', 'ATR0661G195' => 'atr', 'ATR1152G031' => 'atr', 'Atru.chr11.2382' => 'acertr', 'Atru.chr12.2337' => 'acertr', 'Atru.chr3.744' => 'acertr', 'Atru.chr6.1870' => 'acertr', 'Atru.chr9.2515' => 'acertr', 'AUR62004120' => 'cqu', 'AUR62005667' => 'cqu', 'AUR62007634' => 'cqu', 'AUR62008186' => 'cqu', 'AUR62008187' => 'cqu', 'AUR62008188' => 'cqu', 'AUR62027954' => 'cqu', 'AUR62028766' => 'cqu', 'AUR62028767' => 'cqu', 'AUR62028768' => 'cqu', 'AUR62028886' => 'cqu', 'AUR62029563' => 'cqu', 'AUR62038832' => 'cqu', 'BcaB01g04149' => 'bca', 'BcaB03g12940' => 'bca', 'BcaB03g13090' => 'bca', 'BcaB03g14466' => 'bca', 'BcaB05g24035' => 'bca', 'BcaC01g06050' => 'bca', 'BcaC04g19148' => 'bca', 'BcaC04g20761' => 'bca', 'BcaC06g32845' => 'bca', 'BcaC07g41274' => 'bca', 'BcaC09g50827' => 'bca', 'BcaNung00741' => 'bca', 'BcaNung00742' => 'bca', 'BcaNung01859' => 'bca', 'BcaNung03985' => 'bca', 'BcaNung03989' => 'bca', 'BcaNung05661' => 'bca', 'BolC1t00257H' => 'bol', 'BolC1t01956H' => 'bol', 'BolC2t06534H' => 'bol', 'BolC3t14334H' => 'bol', 'BolC5t30451H' => 'bol', 'BolC7t45880H' => 'bol', 'BolC7t46586H' => 'bol', 'BolC8t49301H' => 'bol', 'BolC8t51837H' => 'bol', 'BolC9t56822H' => 'bol', 'BolC9t59235H' => 'bol', 'BraA01t00234Z' => 'bra', 'BraA01t01563Z' => 'bra', 'BraA02t05147Z' => 'bra', 'BraA03t10947Z' => 'bra', 'BraA03t14633Z' => 'bra', 'BraA08t35112Z' => 'bra', 'BraA09t41330Z' => 'bra', 'BraA10t44570Z' => 'bra', 'C01p02670' => 'bna', 'C01p20260' => 'bna', 'C02p05890' => 'bna', 'C03p19530' => 'bna', 'C05p17470' => 'bna', 'C07p53900' => 'bna', 'C07p61630' => 'bna', 'C08p16800' => 'bna', 'C08p42810' => 'bna', 'C09p39480' => 'bna', 'C09p63980' => 'bna', 'CAN.G1001.7' => 'can', 'CAN.G1034.55' => 'can', 'CAN.G143.7' => 'can', 'CAN.G3340.1' => 'can', 'CAN.G358.19' => 'can', 'CAN.G373.2' => 'can', 'CAN.G674.16' => 'can', 'CAN.G674.17' => 'can', 'CAN.G674.18' => 'can', 'CAN.G732.2' => 'can', 'CAN.G732.3' => 'can', 'CAN.G993.39' => 'can', 'CANSAT01G2052' => 'cansat', 'CANSAT80G0070' => 'cansat', 'CANSAT80G0483' => 'cansat', 'CANSAT80G0625' => 'cansat', 'CARHR019690' => 'chi', 'CARHR080280' => 'chi', 'CARHR152750' => 'chi', 'CARHR152760' => 'chi', 'CARHR152770' => 'chi', 'CARHR200340' => 'chi', 'CARHR232370' => 'chi', 'CARHR244670' => 'chi', 'CARHR244680' => 'chi', 'CARHR257520' => 'chi', 'Carub.0001s1872' => 'cru', 'Carub.0006s1130' => 'cru', 'Carub.0007s0396' => 'cru', 'Carub.0007s0397' => 'cru', 'Carub.0007s1608' => 'cru', 'Carub.0008s1068' => 'cru', 'Carub.0008s1077' => 'cru', 'Ca_16158_v3' => 'car', 'Ca_17571_v3' => 'car', 'Ca_21936_v3' => 'car', 'Ca_22350_v3' => 'car', 'CBR_g22445' => 'cbr', 'CBR_g26290' => 'cbr', 'Cc04_g09610' => 'ccan', 'Cc04_g12280' => 'ccan', 'Cc07_g10230' => 'ccan', 'CDE02G0093' => 'cde', 'CDE02G0701' => 'cde', 'CDE04G1050' => 'cde', 'CDE05G1833' => 'cde', 'CDE05G3058' => 'cde', 'CDE05G3380' => 'cde', 'CDE06G0536' => 'cde', 'Cfa006923' => 'cfa', 'Cfa009402' => 'cfa', 'Cfa018751' => 'cfa', 'Cfa019164' => 'cfa', 'Cfa022935' => 'cfa', 'Ciclev10019081m.g' => 'ccl', 'Ciclev10025076m.g' => 'ccl', 'Ciclev10030712m.g' => 'ccl', 'Ciclev10033760m.g' => 'ccl', 'CiPaw.05G105600' => 'cil', 'CiPaw.08G136700' => 'cil', 'CiPaw.11G003900' => 'cil', 'CiPaw.11G023700' => 'cil', 'CiPaw.12G003700' => 'cil', 'ClCG06G017100' => 'cla', 'ClCG06G018110' => 'cla', 'ClCG07G008800' => 'cla', 'ClCG07G015330' => 'cla', 'COL.COLO4_13698' => 'col', 'COL.COLO4_16659' => 'col', 'COL.COLO4_21986' => 'col', 'COL.COLO4_24049' => 'col', 'COL.COLO4_29061' => 'col', 'COL.COLO4_29075' => 'col', 'COL.COLO4_30094' => 'col', 'Cpa.g.c33689' => 'cpa', 'Cpa.g.sc108.39' => 'cpa', 'Cpa.g.sc108.41' => 'cpa', 'Cpa.g.sc1163.1' => 'cpa', 'Cpa.g.sc4.155' => 'cpa', 'Cpa.g.sc6.194' => 'cpa', 'CsaV3_1G000340' => 'csa', 'CsaV3_1G001400' => 'csa', 'CsaV3_4G002220' => 'csa', 'CsaV3_4G005370' => 'csa', 'CSS0007487' => 'camsi', 'CSS0008066' => 'camsi', 'CSS0009120' => 'camsi', 'CSS0015512' => 'camsi', 'CSS0022409' => 'camsi', 'CSS0025358' => 'camsi', 'CSS0044547' => 'camsi', 'DCAR_013057' => 'dca', 'DCAR_015058' => 'dca', 'DCAR_016027' => 'dca', 'DCAR_017327' => 'dca', 'DCAR_020743' => 'dca', 'DCAR_026157' => 'dca', 'DCAR_032339' => 'dca', 'DCAR_032340' => 'dca', 'Dinv11200' => 'din', 'Dinv11201' => 'din', 'Dinv20631' => 'din', 'Dinv23182' => 'din', 'Dinv33466' => 'din', 'Dinv33583' => 'din', 'Dinv38565' => 'din', 'Duzib068G0200' => 'dzi', 'Duzib147G0132' => 'dzi', 'Duzib147G0635' => 'dzi', 'Duzib205G1670' => 'dzi', 'Duzib251G0606' => 'dzi', 'ECA232G3336' => 'eca', 'ECA232G3763' => 'eca', 'ECA232G4845' => 'eca', 'ECA234G1607' => 'eca', 'ECA246G0932' => 'eca', 'ECA247G0781' => 'eca', 'ECA247G1932' => 'eca', 'ECA247G2079' => 'eca', 'ECA247G3338' => 'eca', 'ECA247G4115' => 'eca', 'EL10Ac3g06552' => 'bvu', 'EL10Ac5g10721' => 'bvu', 'EL10Ac5g10722' => 'bvu', 'EL10Ac5g10723' => 'bvu', 'EL10Ac5g11361' => 'bvu', 'EL10Ac6g13553' => 'bvu', 'EL10As8g23872' => 'bvu', 'Eucgr.B00250' => 'egr', 'Eucgr.B00251' => 'egr', 'Eucgr.B03533' => 'egr', 'Eucgr.I02381' => 'egr', 'Eucgr.K02700' => 'egr', 'FAN02G0174' => 'fan', 'FAN02G3146' => 'fan', 'FAN04G1672' => 'fan', 'FAN04G2273' => 'fan', 'FAN05G2791' => 'fan', 'FAN05G4035' => 'fan', 'FAN07G0834' => 'fan', 'FAN08G1198' => 'fan', 'FAN09G4182' => 'fan', 'FAN12G0496' => 'fan', 'FAN13G1027' => 'fan', 'FAN13G2951' => 'fan', 'FAN14G0705' => 'fan', 'FAN14G0720' => 'fan', 'FAN17G0201' => 'fan', 'FAN17G2665' => 'fan', 'FAN18G1456' => 'fan', 'FAN18G1525' => 'fan', 'FAN18G3500' => 'fan', 'FAN28G2670' => 'fan', 'FvH4_1g12391' => 'fve', 'FvH4_4g23220' => 'fve', 'FvH4_5g08810' => 'fve', 'FvH4_5g28960' => 'fve', 'FvH4_6g42820' => 'fve', 'FvH4_6g51110' => 'fve', 'Glyma.02G051802' => 'gma', 'Glyma.04G185300' => 'gma', 'Glyma.05G202900' => 'gma', 'Glyma.08G010300' => 'gma', 'Glyma.16G131900' => 'gma', 'Glyma.17G087900' => 'gma', 'Gohir.A07G048600' => 'ghi', 'Gohir.A11G179000' => 'ghi', 'Gohir.A12G140900' => 'ghi', 'Gohir.A12G140950' => 'ghi', 'Gohir.A12G191700' => 'ghi', 'Gohir.A13G086300' => 'ghi', 'Gohir.D07G052900' => 'ghi', 'Gohir.D11G186600' => 'ghi', 'Gohir.D12G145575' => 'ghi', 'Gohir.D12G145650' => 'ghi', 'Gohir.D12G145725' => 'ghi', 'Gohir.D12G194050' => 'ghi', 'Gohir.D13G091800' => 'ghi', 'Gorai.001G055900' => 'gra', 'Gorai.007G198400' => 'gra', 'Gorai.008G157000' => 'gra', 'Gorai.008G157100' => 'gra', 'Gorai.008G208700' => 'gra', 'Gorai.010G138700' => 'gra', 'GSVIVG01000977001' => 'vvi', 'GSVIVG01007708001' => 'vvi', 'GSVIVG01008587001' => 'vvi', 'GSVIVG01018849001' => 'vvi', 'GSVIVG01032432001' => 'vvi', 'HanXRQChr02g0034131' => 'han', 'HanXRQChr02g0035981' => 'han', 'HanXRQChr02g0035991' => 'han', 'HanXRQChr05g0155611' => 'han', 'HanXRQChr05g0155621' => 'han', 'HanXRQChr08g0236501' => 'han', 'HanXRQChr09g0261321' => 'han', 'HanXRQChr09g0272081' => 'han', 'HanXRQChr10g0310741' => 'han', 'HanXRQChr11g0325591' => 'han', 'HanXRQChr12g0385691' => 'han', 'HanXRQChr13g0387801' => 'han', 'HanXRQChr15g0463011' => 'han', 'Haze_03826' => 'cav', 'Haze_03827' => 'cav', 'Haze_07183' => 'cav', 'Haze_07537' => 'cav', 'Haze_07539' => 'cav', 'Haze_12461' => 'cav', 'Haze_16115' => 'cav', 'Haze_16808' => 'cav', 'Haze_18531' => 'cav', 'Hma1.2p1_0046F.1_g026700' => 'hma', 'Hma1.2p1_0046F.1_g026710' => 'hma', 'Hma1.2p1_0168F.1_g074340' => 'hma', 'Hma1.2p1_0266F.1_g107030' => 'hma', 'Hma1.2p1_0266F.1_g107060' => 'hma', 'Hma1.2p1_0275F.1_g110510' => 'hma', 'Hma1.2p1_0592F.1_g185490' => 'hma', 'Hma1.2p1_0592F.1_g185500' => 'hma', 'Hma1.2p1_0592F.1_g185510' => 'hma', 'Hma1.2p1_0592F.1_g185520' => 'hma', 'Hma1.2p1_0592F.1_g185530' => 'hma', 'Hma1.2p1_0818F.1_g223450' => 'hma', 'HPP92_009708' => 'vpl', 'HPP92_009793' => 'vpl', 'HPP92_009796' => 'vpl', 'HPP92_009797' => 'vpl', 'HPP92_014940' => 'vpl', 'HPP92_014988' => 'vpl', 'Hund02463' => 'sun', 'Hund02760' => 'sun', 'Hund05071' => 'sun', 'Hund10108' => 'sun', 'Hund11204' => 'sun', 'Hund14016' => 'sun', 'Hund16464' => 'sun', 'Lalb_Chr09g0333391' => 'lal', 'Lalb_Chr11g0070461' => 'lal', 'Lalb_Chr12g0201671' => 'lal', 'Lalb_Chr13g0297161' => 'lal', 'Lj1g0002823' => 'lja', 'Lj3C1074T6' => 'lonja', 'Lj4A212T28' => 'lonja', 'Lj4g0005516' => 'lja', 'Lj4g0013705' => 'lja', 'Lj4g0027865' => 'lja', 'Lj5C92G16' => 'lonja', 'Lj5C92T12' => 'lonja', 'Lj7C596T3' => 'lonja', 'Lj9A446G59' => 'lonja', 'Lj9A482G21' => 'lonja', 'Lsat_1_v5_gn_1_28261' => 'lsa', 'Lsat_1_v5_gn_1_28281' => 'lsa', 'Lsat_1_v5_gn_1_32721' => 'lsa', 'Lsat_1_v5_gn_4_151760' => 'lsa', 'Lsat_1_v5_gn_4_2120' => 'lsa', 'Lsat_1_v5_gn_4_75761' => 'lsa', 'Lsat_1_v5_gn_5_10920' => 'lsa', 'Manes.02G099900' => 'mes', 'Manes.11G096200' => 'mes', 'Manes.12G007200' => 'mes', 'Manes.14G048300' => 'mes', 'Manes.17G114700' => 'mes', 'Mapoly0002s0070' => 'mpo', 'Mapoly0029s0099' => 'mpo', 'MBI07_g24742_MAGBIO' => 'mbi', 'MBI10_g27988_MAGBIO' => 'mbi', 'MBI11_g13057_MAGBIO' => 'mbi', 'MD02G1137200' => 'mdo', 'MD06G1137200' => 'mdo', 'MD07G1122300' => 'mdo', 'MD09G1078200' => 'mdo', 'MD13G1123700' => 'mdo', 'MD14G1151900' => 'mdo', 'MD17G1030900' => 'mdo', 'MD17G1068200' => 'mdo', 'MD17G1068600' => 'mdo', 'Medtr3g077540' => 'mtr', 'Medtr4g105530' => 'mtr', 'Medtr8g076580' => 'mtr', 'Medtr8g076590' => 'mtr', 'Medtr8g096410' => 'mtr', 'MELO3C016411.2' => 'cme', 'MELO3C017780.2' => 'cme', 'MELO3C022560.2' => 'cme', 'MELO3C026187.2' => 'cme', 'MELO3C026286.2' => 'cme', 'MELO3C032854.2' => 'cme', 'Migut.H02495' => 'egut', 'Migut.I00561' => 'egut', 'Migut.K01015' => 'egut', 'Migut.K01016' => 'egut', 'Migut.L00743' => 'egut', 'Migut.L00744' => 'egut', 'Migut.L00746' => 'egut', 'Migut.L00798' => 'egut', 'Migut.L00799' => 'egut', 'Migut.N02096' => 'egut', 'MSTRG.11259' => 'ama', 'MSTRG.23142' => 'ama', 'MSTRG.2499' => 'ama', 'Nitab4.5_0000003g0730' => 'nta', 'Nitab4.5_0000137g0020' => 'nta', 'Nitab4.5_0000721g0210' => 'nta', 'Nitab4.5_0000723g0050' => 'nta', 'Nitab4.5_0000913g0070' => 'nta', 'Nitab4.5_0001332g0040' => 'nta', 'Nitab4.5_0001771g0050' => 'nta', 'Nitab4.5_0001918g0050' => 'nta', 'Nitab4.5_0002686g0030' => 'nta', 'Nitab4.5_0003156g0020' => 'nta', 'Nitab4.5_0003383g0040' => 'nta', 'Nitab4.5_0003918g0010' => 'nta', 'Nitab4.5_0006760g0010' => 'nta', 'Nn1g05981' => 'nnu', 'Nn1g06288' => 'nnu', 'Nn3g16371' => 'nnu', 'Nn3g16786' => 'nnu', 'Nn4g22232' => 'nnu', 'Oeu005144.1' => 'oeu', 'Oeu005145.1' => 'oeu', 'Oeu011348.1' => 'oeu', 'Oeu016415.1' => 'oeu', 'Oeu023501.1' => 'oeu', 'Oeu044473.1' => 'oeu', 'Oeu048892.2' => 'oeu', 'Os01g0549200' => 'osa', 'Os02g0469300' => 'osa', 'Os04g0311100' => 'osa', 'Os06g0474900' => 'osa', 'Os10g0181700' => 'osa', 'Os11g0454800' => 'osa', 'Peaxi162Scf00037g00714' => 'pax', 'Peaxi162Scf00084g01217' => 'pax', 'Peaxi162Scf00257g00217' => 'pax', 'Peaxi162Scf00516g00215' => 'pax', 'Peaxi162Scf00689g00123' => 'pax', 'PGR044G2719' => 'pgr', 'PGR083G1360' => 'pgr', 'PGR102G2849' => 'pgr', 'PGR119G2534' => 'pgr', 'PGSC0003DMG400003538' => 'stu', 'PGSC0003DMG400028138' => 'stu', 'PGSC0003DMG400031732' => 'stu', 'PGSC0003DMG400038165' => 'stu', 'Phvul.002G284600' => 'pvu', 'Phvul.003G258200' => 'pvu', 'Phvul.009G176500' => 'pvu', 'Potri.003G167201' => 'ptr', 'Potri.005G118400' => 'ptr', 'Potri.012G089000' => 'ptr', 'Potri.012G102800' => 'ptr', 'Potri.015G079400' => 'ptr', 'Potri.015G100900' => 'ptr', 'Pp3c14_9810' => 'ppa', 'Pp3c15_10450' => 'ppa', 'Pp3c20_19150' => 'ppa', 'Pp3c23_12740' => 'ppa', 'Pp3c23_6310' => 'ppa', 'Pp3c24_3720' => 'ppa', 'Pp3c27_2580' => 'ppa', 'Pp3c9_8990' => 'ppa', 'PRCOL_00002854' => 'pco', 'Prupe.1G221200' => 'ppe', 'Prupe.3G289000' => 'ppe', 'Prupe.5G147000' => 'ppe', 'Prupe.6G157300' => 'ppe', 'Prupe.7G163400' => 'ppe', 'Psat0s2177g0040' => 'psa', 'Psat3g174760' => 'psa', 'Psat3g192160' => 'psa', 'Psat4g058520' => 'psa', 'Psat4g096840' => 'psa', 'Psat7g037320' => 'psa', 'PSO017G1274' => 'pso', 'PSO017G5166' => 'pso', 'PSO063G4558' => 'pso', 'PSO170G4458' => 'pso', 'PSO170G5005' => 'pso', 'PSO210G6156' => 'pso', 'PSO210G6635' => 'pso', 'PSO210G7397' => 'pso', 'PSO210G7700' => 'pso', 'PSO455G0035' => 'pso', 'PSO455G0180' => 'pso', 'PSO478G4515' => 'pso', 'PSO832G1305' => 'pso', 'PSO832G3489' => 'pso', 'QL02p075247' => 'qlo', 'QL03p051148' => 'qlo', 'QL05p010313' => 'qlo', 'QL06p034627' => 'qlo', 'QL10p001889' => 'qlo', 'QL10p010846' => 'qlo', 'RcHm_v2.0_Chr1g0350621' => 'rch', 'RcHm_v2.0_Chr1g0350641' => 'rch', 'RcHm_v2.0_Chr2g0092891' => 'rch', 'RcHm_v2.0_Chr2g0100251' => 'rch', 'RcHm_v2.0_Chr2g0158661' => 'rch', 'RcHm_v2.0_Chr2g0172741' => 'rch', 'RcHm_v2.0_Chr4g0429571' => 'rch', 'RcHm_v2.0_Chr5g0042471' => 'rch', 'RcHm_v2.0_Chr7g0189451' => 'rch', 'Rhsim08G0052000' => 'rsi', 'Rhsim08G0174400' => 'rsi', 'Rhsim08G0193200' => 'rsi', 'Rhsim10G0214800' => 'rsi', 'Rhsim10G0214900' => 'rsi', 'Rhsim10G0215000' => 'rsi', 'Rhsim12G0022900' => 'rsi', 'Rhsim12G0177500' => 'rsi', 'Rhsim12G0177700' => 'rsi', 'Sabra03G0122600' => 'sbr', 'Sabra05G0097400' => 'sbr', 'Sabra12G0064100' => 'sbr', 'Sabra15G0121300' => 'sbr', 'SalBow2G0642' => 'sbo', 'SalBow5G2667' => 'sbo', 'SalBow5G4873' => 'sbo', 'SalBow8G2395' => 'sbo', 'Sc03g0003290' => 'sci', 'Sc10g0010130' => 'sci', 'Sc22g0003650' => 'sci', 'Sed0001603' => 'sed', 'Sed0004259' => 'sed', 'Sed0006789' => 'sed', 'Sed0011838' => 'sed', 'Sed0012964' => 'sed', 'Sed0016383' => 'sed', 'Sed0019010' => 'sed', 'Sed0020188' => 'sed', 'SEGI_04702' => 'sgi', 'SEGI_17231' => 'sgi', 'SEGI_18877' => 'sgi', 'SEGI_25196' => 'sgi', 'SEGI_25515' => 'sgi', 'SEGI_28445' => 'sgi', 'SEGI_37452' => 'sgi', 'SGA_v2.0_scaffold188G40336' => 'sas', 'SGA_v2.0_scaffold228G43247' => 'sas', 'SGA_v2.0_scaffold280G46853' => 'sas', 'SGA_v2.0_scaffold34G13808' => 'sas', 'SGA_v2.0_scaffold40G15576' => 'sas', 'SGA_v2.0_scaffold611G53188' => 'sas', 'SGA_v2.0_scaffold78G25461' => 'sas', 'SGA_v2.0_scaffold90G27888' => 'sas', 'SHI08601' => 'shi', 'SHI08606' => 'shi', 'SHI17117' => 'shi', 'SHI17119' => 'shi', 'SMO118G0201' => 'smo', 'SMO169G0247' => 'smo', 'SMO176G0006' => 'smo', 'SMO176G0015' => 'smo', 'SMO202G0006' => 'smo', 'SMO240G0050' => 'smo', 'SMO286G0009' => 'smo', 'SMO338G0033' => 'smo', 'SMO356G0533' => 'smo', 'SMO364G0382' => 'smo', 'SMO367G0166' => 'smo', 'SMO367G1098' => 'smo', 'Solyc01g009920.3' => 'sly', 'Solyc01g099300.3' => 'sly', 'Solyc02g084700.3' => 'sly', 'Solyc03g097520.3' => 'sly', 'Solyc06g071580.3' => 'sly', 'Solyc10g081760.3' => 'sly', 'Sopen01g005480' => 'spe', 'Sopen01g042850' => 'spe', 'Sopen02g029370' => 'spe', 'Sopen03g028280' => 'spe', 'Sopen06g027870' => 'spe', 'Sopen10g032270' => 'spe', 'Sp5g18180' => 'spa', 'Sp6g12880' => 'spa', 'Sp6g30850' => 'spa', 'Sp7g22960' => 'spa', 'Sp7g34010' => 'spa', 'SpUn1326_0010' => 'spa', 'TAR371G0242' => 'tar', 'TAR622G0638' => 'tar', 'TAR628G1548' => 'tar', 'TAR629G1079' => 'tar', 'TAR629G3413' => 'tar', 'THA.LOC104804249' => 'tha', 'THA.LOC104808315' => 'tha', 'THA.LOC104809238' => 'tha', 'THA.LOC104825484' => 'tha', 'Thecc.01G025500' => 'tca', 'Thecc.03G015800' => 'tca', 'Thecc.03G018000' => 'tca', 'Thecc.03G134800' => 'tca', 'Thecc.04G014700' => 'tca', 'Thhalv10006991m.g' => 'esa', 'Thhalv10012707m.g' => 'esa', 'Thhalv10015739m.g' => 'esa', 'Thhalv10024553m.g' => 'esa', 'Thhalv10024673m.g' => 'esa', 'Thhalv10029187m.g' => 'esa', 'TPR.G12971' => 'tpr', 'TPR.G29396' => 'tpr', 'TPR.G33376' => 'tpr', 'TPR.G35508' => 'tpr', 'TPR.G35516' => 'tpr', 'TPR.G37317' => 'tpr', 'TPR.G37389' => 'tpr', 'TPR.G37523' => 'tpr', 'TPR.G559' => 'tpr', 'TWI14G0070' => 'twi', 'TWI14G0729' => 'twi', 'TWI18G0596' => 'twi', 'TWI39G0780' => 'twi', 'TWI39G0850' => 'twi', 'TWI73G1052' => 'twi', 'unitig_52.g17485' => 'ugi', 'unitig_61.g26355' => 'ugi', 'vmacro01040' => 'vma', 'vmacro16731' => 'vma', 'vmacro18270' => 'vma', 'vmacro19142' => 'vma', 'vmacro19407' => 'vma', 'vmacro19408' => 'vma', 'vmacro21899' => 'vma', 'vmacro21900' => 'vma', 'vmacro21901' => 'vma', 'VMungo0251G0490' => 'vmu', 'VMungo0251G1748' => 'vmu', 'VMungo1309G0421' => 'vmu', 'Zm00001eb086500' => 'zma', 'Zm00001eb150680' => 'zma', 'Zm00001eb162330' => 'zma', 'Zm00001eb203130' => 'zma', 'Zm00001eb369480' => 'zma', 'Zm00001eb382340' => 'zma', 'Zm00001eb416360' => 'zma' ), 'gf_id' => 'HOM05D000902', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000902' ), 'data_identifier' => 'HOM05D000902', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000902', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '663', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02470' => 'bna', 'A01p16260' => 'bna', 'A02p01680' => 'bna', 'A03p16600' => 'bna', 'A03p55660' => 'bna', 'A03p64160' => 'bna', 'A03p64170' => 'bna', 'A08p31900' => 'bna', 'A09p59530' => 'bna', 'A10p08230' => 'bna', 'A10p25090' => 'bna', 'Aa31LG3G7100' => 'aar', 'Aa31LG3G7110' => 'aar', 'Aa31LG6G13160' => 'aar', 'Aa31LG7G10770' => 'aar', 'Aa31LG7G3830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2723' => 'aag', 'Actinidia08045' => 'ach', 'Actinidia08888' => 'ach', 'Actinidia18333' => 'ach', 'Actinidia19334' => 'ach', 'Actinidia25552' => 'ach', 'Actinidia26089' => 'ach', 'Actinidia30615' => 'ach', 'Actinidia30616' => 'ach', 'Actinidia33083' => 'ach', 'Actinidia35762' => 'ach', 'Ah.02g110620' => 'amhyb', 'Ah.11g046390' => 'amhyb', 'AL1G31670' => 'aly', 'AL6G23730' => 'aly', 'AL7G14740' => 'aly', 'AL7G14750' => 'aly', 'AL7G14760' => 'aly', 'AL7G28220' => 'aly', 'AL8G24940' => 'aly', 'Aqoxy3G01665' => 'aox', 'Aqoxy3G02853' => 'aox', 'Aqoxy5G01513' => 'aox', 'Aqoxy5G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8SKA4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ75LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKDA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0LJZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7REX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZP4YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWX7I5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2QKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS0L9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPCD8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q161UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC7XCF' => 'arhy', 'AT1G19100' => 'ath', 'AT4G24970' => 'ath', 'AT4G36270' => 'ath', 'AT4G36280' => 'ath', 'AT4G36290' => 'ath', 'AT5G13130' => 'ath', 'AT5G50780' => 'ath', 'ATR0582G266' => 'atr', 'ATR0661G195' => 'atr', 'ATR1152G031' => 'atr', 'Atru.chr11.2382' => 'acertr', 'Atru.chr12.2337' => 'acertr', 'Atru.chr3.744' => 'acertr', 'Atru.chr6.1870' => 'acertr', 'Atru.chr9.2515' => 'acertr', 'AUR62004120' => 'cqu', 'AUR62005667' => 'cqu', 'AUR62007634' => 'cqu', 'AUR62008186' => 'cqu', 'AUR62008187' => 'cqu', 'AUR62008188' => 'cqu', 'AUR62027954' => 'cqu', 'AUR62028766' => 'cqu', 'AUR62028767' => 'cqu', 'AUR62028768' => 'cqu', 'AUR62028886' => 'cqu', 'AUR62029563' => 'cqu', 'AUR62038832' => 'cqu', 'BcaB01g04149' => 'bca', 'BcaB03g12940' => 'bca', 'BcaB03g13090' => 'bca', 'BcaB03g14466' => 'bca', 'BcaB05g24035' => 'bca', 'BcaC01g06050' => 'bca', 'BcaC04g19148' => 'bca', 'BcaC04g20761' => 'bca', 'BcaC06g32845' => 'bca', 'BcaC07g41274' => 'bca', 'BcaC09g50827' => 'bca', 'BcaNung00741' => 'bca', 'BcaNung00742' => 'bca', 'BcaNung01859' => 'bca', 'BcaNung03985' => 'bca', 'BcaNung03989' => 'bca', 'BcaNung05661' => 'bca', 'BolC1t00257H' => 'bol', 'BolC1t01956H' => 'bol', 'BolC2t06534H' => 'bol', 'BolC3t14334H' => 'bol', 'BolC5t30451H' => 'bol', 'BolC7t45880H' => 'bol', 'BolC7t46586H' => 'bol', 'BolC8t49301H' => 'bol', 'BolC8t51837H' => 'bol', 'BolC9t56822H' => 'bol', 'BolC9t59235H' => 'bol', 'BraA01t00234Z' => 'bra', 'BraA01t01563Z' => 'bra', 'BraA02t05147Z' => 'bra', 'BraA03t10947Z' => 'bra', 'BraA03t14633Z' => 'bra', 'BraA08t35112Z' => 'bra', 'BraA09t41330Z' => 'bra', 'BraA10t44570Z' => 'bra', 'C01p02670' => 'bna', 'C01p20260' => 'bna', 'C02p05890' => 'bna', 'C03p19530' => 'bna', 'C05p17470' => 'bna', 'C07p53900' => 'bna', 'C07p61630' => 'bna', 'C08p16800' => 'bna', 'C08p42810' => 'bna', 'C09p39480' => 'bna', 'C09p63980' => 'bna', 'CAN.G1001.7' => 'can', 'CAN.G1034.55' => 'can', 'CAN.G143.7' => 'can', 'CAN.G3340.1' => 'can', 'CAN.G358.19' => 'can', 'CAN.G373.2' => 'can', 'CAN.G674.16' => 'can', 'CAN.G674.17' => 'can', 'CAN.G674.18' => 'can', 'CAN.G732.2' => 'can', 'CAN.G732.3' => 'can', 'CAN.G993.39' => 'can', 'CANSAT01G2052' => 'cansat', 'CANSAT80G0070' => 'cansat', 'CANSAT80G0483' => 'cansat', 'CANSAT80G0625' => 'cansat', 'CARHR019690' => 'chi', 'CARHR080280' => 'chi', 'CARHR152750' => 'chi', 'CARHR152760' => 'chi', 'CARHR152770' => 'chi', 'CARHR200340' => 'chi', 'CARHR232370' => 'chi', 'CARHR244670' => 'chi', 'CARHR244680' => 'chi', 'CARHR257520' => 'chi', 'Carub.0001s1872' => 'cru', 'Carub.0006s1130' => 'cru', 'Carub.0007s0396' => 'cru', 'Carub.0007s0397' => 'cru', 'Carub.0007s1608' => 'cru', 'Carub.0008s1068' => 'cru', 'Carub.0008s1077' => 'cru', 'Ca_16158_v3' => 'car', 'Ca_17571_v3' => 'car', 'Ca_21936_v3' => 'car', 'Ca_22350_v3' => 'car', 'CBR_g22445' => 'cbr', 'CBR_g26290' => 'cbr', 'Cc04_g09610' => 'ccan', 'Cc04_g12280' => 'ccan', 'Cc07_g10230' => 'ccan', 'CDE02G0093' => 'cde', 'CDE02G0701' => 'cde', 'CDE04G1050' => 'cde', 'CDE05G1833' => 'cde', 'CDE05G3058' => 'cde', 'CDE05G3380' => 'cde', 'CDE06G0536' => 'cde', 'Cfa006923' => 'cfa', 'Cfa009402' => 'cfa', 'Cfa018751' => 'cfa', 'Cfa019164' => 'cfa', 'Cfa022935' => 'cfa', 'Ciclev10019081m.g' => 'ccl', 'Ciclev10025076m.g' => 'ccl', 'Ciclev10030712m.g' => 'ccl', 'Ciclev10033760m.g' => 'ccl', 'CiPaw.05G105600' => 'cil', 'CiPaw.08G136700' => 'cil', 'CiPaw.11G003900' => 'cil', 'CiPaw.11G023700' => 'cil', 'CiPaw.12G003700' => 'cil', 'ClCG06G017100' => 'cla', 'ClCG06G018110' => 'cla', 'ClCG07G008800' => 'cla', 'ClCG07G015330' => 'cla', 'COL.COLO4_13698' => 'col', 'COL.COLO4_16659' => 'col', 'COL.COLO4_21986' => 'col', 'COL.COLO4_24049' => 'col', 'COL.COLO4_29061' => 'col', 'COL.COLO4_29075' => 'col', 'COL.COLO4_30094' => 'col', 'Cpa.g.c33689' => 'cpa', 'Cpa.g.sc108.39' => 'cpa', 'Cpa.g.sc108.41' => 'cpa', 'Cpa.g.sc1163.1' => 'cpa', 'Cpa.g.sc4.155' => 'cpa', 'Cpa.g.sc6.194' => 'cpa', 'CsaV3_1G000340' => 'csa', 'CsaV3_1G001400' => 'csa', 'CsaV3_4G002220' => 'csa', 'CsaV3_4G005370' => 'csa', 'CSS0007487' => 'camsi', 'CSS0008066' => 'camsi', 'CSS0009120' => 'camsi', 'CSS0015512' => 'camsi', 'CSS0022409' => 'camsi', 'CSS0025358' => 'camsi', 'CSS0044547' => 'camsi', 'DCAR_013057' => 'dca', 'DCAR_015058' => 'dca', 'DCAR_016027' => 'dca', 'DCAR_017327' => 'dca', 'DCAR_020743' => 'dca', 'DCAR_026157' => 'dca', 'DCAR_032339' => 'dca', 'DCAR_032340' => 'dca', 'Dinv11200' => 'din', 'Dinv11201' => 'din', 'Dinv20631' => 'din', 'Dinv23182' => 'din', 'Dinv33466' => 'din', 'Dinv33583' => 'din', 'Dinv38565' => 'din', 'Duzib068G0200' => 'dzi', 'Duzib147G0132' => 'dzi', 'Duzib147G0635' => 'dzi', 'Duzib205G1670' => 'dzi', 'Duzib251G0606' => 'dzi', 'ECA232G3336' => 'eca', 'ECA232G3763' => 'eca', 'ECA232G4845' => 'eca', 'ECA234G1607' => 'eca', 'ECA246G0932' => 'eca', 'ECA247G0781' => 'eca', 'ECA247G1932' => 'eca', 'ECA247G2079' => 'eca', 'ECA247G3338' => 'eca', 'ECA247G4115' => 'eca', 'EL10Ac3g06552' => 'bvu', 'EL10Ac5g10721' => 'bvu', 'EL10Ac5g10722' => 'bvu', 'EL10Ac5g10723' => 'bvu', 'EL10Ac5g11361' => 'bvu', 'EL10Ac6g13553' => 'bvu', 'EL10As8g23872' => 'bvu', 'Eucgr.B00250' => 'egr', 'Eucgr.B00251' => 'egr', 'Eucgr.B03533' => 'egr', 'Eucgr.I02381' => 'egr', 'Eucgr.K02700' => 'egr', 'FAN02G0174' => 'fan', 'FAN02G3146' => 'fan', 'FAN04G1672' => 'fan', 'FAN04G2273' => 'fan', 'FAN05G2791' => 'fan', 'FAN05G4035' => 'fan', 'FAN07G0834' => 'fan', 'FAN08G1198' => 'fan', 'FAN09G4182' => 'fan', 'FAN12G0496' => 'fan', 'FAN13G1027' => 'fan', 'FAN13G2951' => 'fan', 'FAN14G0705' => 'fan', 'FAN14G0720' => 'fan', 'FAN17G0201' => 'fan', 'FAN17G2665' => 'fan', 'FAN18G1456' => 'fan', 'FAN18G1525' => 'fan', 'FAN18G3500' => 'fan', 'FAN28G2670' => 'fan', 'FvH4_1g12391' => 'fve', 'FvH4_4g23220' => 'fve', 'FvH4_5g08810' => 'fve', 'FvH4_5g28960' => 'fve', 'FvH4_6g42820' => 'fve', 'FvH4_6g51110' => 'fve', 'Glyma.02G051802' => 'gma', 'Glyma.04G185300' => 'gma', 'Glyma.05G202900' => 'gma', 'Glyma.08G010300' => 'gma', 'Glyma.16G131900' => 'gma', 'Glyma.17G087900' => 'gma', 'Gohir.A07G048600' => 'ghi', 'Gohir.A11G179000' => 'ghi', 'Gohir.A12G140900' => 'ghi', 'Gohir.A12G140950' => 'ghi', 'Gohir.A12G191700' => 'ghi', 'Gohir.A13G086300' => 'ghi', 'Gohir.D07G052900' => 'ghi', 'Gohir.D11G186600' => 'ghi', 'Gohir.D12G145575' => 'ghi', 'Gohir.D12G145650' => 'ghi', 'Gohir.D12G145725' => 'ghi', 'Gohir.D12G194050' => 'ghi', 'Gohir.D13G091800' => 'ghi', 'Gorai.001G055900' => 'gra', 'Gorai.007G198400' => 'gra', 'Gorai.008G157000' => 'gra', 'Gorai.008G157100' => 'gra', 'Gorai.008G208700' => 'gra', 'Gorai.010G138700' => 'gra', 'GSVIVG01000977001' => 'vvi', 'GSVIVG01007708001' => 'vvi', 'GSVIVG01008587001' => 'vvi', 'GSVIVG01018849001' => 'vvi', 'GSVIVG01032432001' => 'vvi', 'HanXRQChr02g0034131' => 'han', 'HanXRQChr02g0035981' => 'han', 'HanXRQChr02g0035991' => 'han', 'HanXRQChr05g0155611' => 'han', 'HanXRQChr05g0155621' => 'han', 'HanXRQChr08g0236501' => 'han', 'HanXRQChr09g0261321' => 'han', 'HanXRQChr09g0272081' => 'han', 'HanXRQChr10g0310741' => 'han', 'HanXRQChr11g0325591' => 'han', 'HanXRQChr12g0385691' => 'han', 'HanXRQChr13g0387801' => 'han', 'HanXRQChr15g0463011' => 'han', 'Haze_03826' => 'cav', 'Haze_03827' => 'cav', 'Haze_07183' => 'cav', 'Haze_07537' => 'cav', 'Haze_07539' => 'cav', 'Haze_12461' => 'cav', 'Haze_16115' => 'cav', 'Haze_16808' => 'cav', 'Haze_18531' => 'cav', 'Hma1.2p1_0046F.1_g026700' => 'hma', 'Hma1.2p1_0046F.1_g026710' => 'hma', 'Hma1.2p1_0168F.1_g074340' => 'hma', 'Hma1.2p1_0266F.1_g107030' => 'hma', 'Hma1.2p1_0266F.1_g107060' => 'hma', 'Hma1.2p1_0275F.1_g110510' => 'hma', 'Hma1.2p1_0592F.1_g185490' => 'hma', 'Hma1.2p1_0592F.1_g185500' => 'hma', 'Hma1.2p1_0592F.1_g185510' => 'hma', 'Hma1.2p1_0592F.1_g185520' => 'hma', 'Hma1.2p1_0592F.1_g185530' => 'hma', 'Hma1.2p1_0818F.1_g223450' => 'hma', 'HPP92_009708' => 'vpl', 'HPP92_009793' => 'vpl', 'HPP92_009796' => 'vpl', 'HPP92_009797' => 'vpl', 'HPP92_014940' => 'vpl', 'HPP92_014988' => 'vpl', 'Hund02463' => 'sun', 'Hund02760' => 'sun', 'Hund05071' => 'sun', 'Hund10108' => 'sun', 'Hund11204' => 'sun', 'Hund14016' => 'sun', 'Hund16464' => 'sun', 'Lalb_Chr09g0333391' => 'lal', 'Lalb_Chr11g0070461' => 'lal', 'Lalb_Chr12g0201671' => 'lal', 'Lalb_Chr13g0297161' => 'lal', 'Lj1g0002823' => 'lja', 'Lj3C1074T6' => 'lonja', 'Lj4A212T28' => 'lonja', 'Lj4g0005516' => 'lja', 'Lj4g0013705' => 'lja', 'Lj4g0027865' => 'lja', 'Lj5C92G16' => 'lonja', 'Lj5C92T12' => 'lonja', 'Lj7C596T3' => 'lonja', 'Lj9A446G59' => 'lonja', 'Lj9A482G21' => 'lonja', 'Lsat_1_v5_gn_1_28261' => 'lsa', 'Lsat_1_v5_gn_1_28281' => 'lsa', 'Lsat_1_v5_gn_1_32721' => 'lsa', 'Lsat_1_v5_gn_4_151760' => 'lsa', 'Lsat_1_v5_gn_4_2120' => 'lsa', 'Lsat_1_v5_gn_4_75761' => 'lsa', 'Lsat_1_v5_gn_5_10920' => 'lsa', 'Manes.02G099900' => 'mes', 'Manes.11G096200' => 'mes', 'Manes.12G007200' => 'mes', 'Manes.14G048300' => 'mes', 'Manes.17G114700' => 'mes', 'Mapoly0002s0070' => 'mpo', 'Mapoly0029s0099' => 'mpo', 'MBI07_g24742_MAGBIO' => 'mbi', 'MBI10_g27988_MAGBIO' => 'mbi', 'MBI11_g13057_MAGBIO' => 'mbi', 'MD02G1137200' => 'mdo', 'MD06G1137200' => 'mdo', 'MD07G1122300' => 'mdo', 'MD09G1078200' => 'mdo', 'MD13G1123700' => 'mdo', 'MD14G1151900' => 'mdo', 'MD17G1030900' => 'mdo', 'MD17G1068200' => 'mdo', 'MD17G1068600' => 'mdo', 'Medtr3g077540' => 'mtr', 'Medtr4g105530' => 'mtr', 'Medtr8g076580' => 'mtr', 'Medtr8g076590' => 'mtr', 'Medtr8g096410' => 'mtr', 'MELO3C016411.2' => 'cme', 'MELO3C017780.2' => 'cme', 'MELO3C022560.2' => 'cme', 'MELO3C026187.2' => 'cme', 'MELO3C026286.2' => 'cme', 'MELO3C032854.2' => 'cme', 'Migut.H02495' => 'egut', 'Migut.I00561' => 'egut', 'Migut.K01015' => 'egut', 'Migut.K01016' => 'egut', 'Migut.L00743' => 'egut', 'Migut.L00744' => 'egut', 'Migut.L00746' => 'egut', 'Migut.L00798' => 'egut', 'Migut.L00799' => 'egut', 'Migut.N02096' => 'egut', 'MSTRG.11259' => 'ama', 'MSTRG.23142' => 'ama', 'MSTRG.2499' => 'ama', 'Nitab4.5_0000003g0730' => 'nta', 'Nitab4.5_0000137g0020' => 'nta', 'Nitab4.5_0000721g0210' => 'nta', 'Nitab4.5_0000723g0050' => 'nta', 'Nitab4.5_0000913g0070' => 'nta', 'Nitab4.5_0001332g0040' => 'nta', 'Nitab4.5_0001771g0050' => 'nta', 'Nitab4.5_0001918g0050' => 'nta', 'Nitab4.5_0002686g0030' => 'nta', 'Nitab4.5_0003156g0020' => 'nta', 'Nitab4.5_0003383g0040' => 'nta', 'Nitab4.5_0003918g0010' => 'nta', 'Nitab4.5_0006760g0010' => 'nta', 'Nn1g05981' => 'nnu', 'Nn1g06288' => 'nnu', 'Nn3g16371' => 'nnu', 'Nn3g16786' => 'nnu', 'Nn4g22232' => 'nnu', 'Oeu005144.1' => 'oeu', 'Oeu005145.1' => 'oeu', 'Oeu011348.1' => 'oeu', 'Oeu016415.1' => 'oeu', 'Oeu023501.1' => 'oeu', 'Oeu044473.1' => 'oeu', 'Oeu048892.2' => 'oeu', 'Os01g0549200' => 'osa', 'Os02g0469300' => 'osa', 'Os04g0311100' => 'osa', 'Os06g0474900' => 'osa', 'Os10g0181700' => 'osa', 'Os11g0454800' => 'osa', 'Peaxi162Scf00037g00714' => 'pax', 'Peaxi162Scf00084g01217' => 'pax', 'Peaxi162Scf00257g00217' => 'pax', 'Peaxi162Scf00516g00215' => 'pax', 'Peaxi162Scf00689g00123' => 'pax', 'PGR044G2719' => 'pgr', 'PGR083G1360' => 'pgr', 'PGR102G2849' => 'pgr', 'PGR119G2534' => 'pgr', 'PGSC0003DMG400003538' => 'stu', 'PGSC0003DMG400028138' => 'stu', 'PGSC0003DMG400031732' => 'stu', 'PGSC0003DMG400038165' => 'stu', 'Phvul.002G284600' => 'pvu', 'Phvul.003G258200' => 'pvu', 'Phvul.009G176500' => 'pvu', 'Potri.003G167201' => 'ptr', 'Potri.005G118400' => 'ptr', 'Potri.012G089000' => 'ptr', 'Potri.012G102800' => 'ptr', 'Potri.015G079400' => 'ptr', 'Potri.015G100900' => 'ptr', 'Pp3c14_9810' => 'ppa', 'Pp3c15_10450' => 'ppa', 'Pp3c20_19150' => 'ppa', 'Pp3c23_12740' => 'ppa', 'Pp3c23_6310' => 'ppa', 'Pp3c24_3720' => 'ppa', 'Pp3c27_2580' => 'ppa', 'Pp3c9_8990' => 'ppa', 'PRCOL_00002854' => 'pco', 'Prupe.1G221200' => 'ppe', 'Prupe.3G289000' => 'ppe', 'Prupe.5G147000' => 'ppe', 'Prupe.6G157300' => 'ppe', 'Prupe.7G163400' => 'ppe', 'Psat0s2177g0040' => 'psa', 'Psat3g174760' => 'psa', 'Psat3g192160' => 'psa', 'Psat4g058520' => 'psa', 'Psat4g096840' => 'psa', 'Psat7g037320' => 'psa', 'PSO017G1274' => 'pso', 'PSO017G5166' => 'pso', 'PSO063G4558' => 'pso', 'PSO170G4458' => 'pso', 'PSO170G5005' => 'pso', 'PSO210G6156' => 'pso', 'PSO210G6635' => 'pso', 'PSO210G7397' => 'pso', 'PSO210G7700' => 'pso', 'PSO455G0035' => 'pso', 'PSO455G0180' => 'pso', 'PSO478G4515' => 'pso', 'PSO832G1305' => 'pso', 'PSO832G3489' => 'pso', 'QL02p075247' => 'qlo', 'QL03p051148' => 'qlo', 'QL05p010313' => 'qlo', 'QL06p034627' => 'qlo', 'QL10p001889' => 'qlo', 'QL10p010846' => 'qlo', 'RcHm_v2.0_Chr1g0350621' => 'rch', 'RcHm_v2.0_Chr1g0350641' => 'rch', 'RcHm_v2.0_Chr2g0092891' => 'rch', 'RcHm_v2.0_Chr2g0100251' => 'rch', 'RcHm_v2.0_Chr2g0158661' => 'rch', 'RcHm_v2.0_Chr2g0172741' => 'rch', 'RcHm_v2.0_Chr4g0429571' => 'rch', 'RcHm_v2.0_Chr5g0042471' => 'rch', 'RcHm_v2.0_Chr7g0189451' => 'rch', 'Rhsim08G0052000' => 'rsi', 'Rhsim08G0174400' => 'rsi', 'Rhsim08G0193200' => 'rsi', 'Rhsim10G0214800' => 'rsi', 'Rhsim10G0214900' => 'rsi', 'Rhsim10G0215000' => 'rsi', 'Rhsim12G0022900' => 'rsi', 'Rhsim12G0177500' => 'rsi', 'Rhsim12G0177700' => 'rsi', 'Sabra03G0122600' => 'sbr', 'Sabra05G0097400' => 'sbr', 'Sabra12G0064100' => 'sbr', 'Sabra15G0121300' => 'sbr', 'SalBow2G0642' => 'sbo', 'SalBow5G2667' => 'sbo', 'SalBow5G4873' => 'sbo', 'SalBow8G2395' => 'sbo', 'Sc03g0003290' => 'sci', 'Sc10g0010130' => 'sci', 'Sc22g0003650' => 'sci', 'Sed0001603' => 'sed', 'Sed0004259' => 'sed', 'Sed0006789' => 'sed', 'Sed0011838' => 'sed', 'Sed0012964' => 'sed', 'Sed0016383' => 'sed', 'Sed0019010' => 'sed', 'Sed0020188' => 'sed', 'SEGI_04702' => 'sgi', 'SEGI_17231' => 'sgi', 'SEGI_18877' => 'sgi', 'SEGI_25196' => 'sgi', 'SEGI_25515' => 'sgi', 'SEGI_28445' => 'sgi', 'SEGI_37452' => 'sgi', 'SGA_v2.0_scaffold188G40336' => 'sas', 'SGA_v2.0_scaffold228G43247' => 'sas', 'SGA_v2.0_scaffold280G46853' => 'sas', 'SGA_v2.0_scaffold34G13808' => 'sas', 'SGA_v2.0_scaffold40G15576' => 'sas', 'SGA_v2.0_scaffold611G53188' => 'sas', 'SGA_v2.0_scaffold78G25461' => 'sas', 'SGA_v2.0_scaffold90G27888' => 'sas', 'SHI08601' => 'shi', 'SHI08606' => 'shi', 'SHI17117' => 'shi', 'SHI17119' => 'shi', 'SMO118G0201' => 'smo', 'SMO169G0247' => 'smo', 'SMO176G0006' => 'smo', 'SMO176G0015' => 'smo', 'SMO202G0006' => 'smo', 'SMO240G0050' => 'smo', 'SMO286G0009' => 'smo', 'SMO338G0033' => 'smo', 'SMO356G0533' => 'smo', 'SMO364G0382' => 'smo', 'SMO367G0166' => 'smo', 'SMO367G1098' => 'smo', 'Solyc01g009920.3' => 'sly', 'Solyc01g099300.3' => 'sly', 'Solyc02g084700.3' => 'sly', 'Solyc03g097520.3' => 'sly', 'Solyc06g071580.3' => 'sly', 'Solyc10g081760.3' => 'sly', 'Sopen01g005480' => 'spe', 'Sopen01g042850' => 'spe', 'Sopen02g029370' => 'spe', 'Sopen03g028280' => 'spe', 'Sopen06g027870' => 'spe', 'Sopen10g032270' => 'spe', 'Sp5g18180' => 'spa', 'Sp6g12880' => 'spa', 'Sp6g30850' => 'spa', 'Sp7g22960' => 'spa', 'Sp7g34010' => 'spa', 'SpUn1326_0010' => 'spa', 'TAR371G0242' => 'tar', 'TAR622G0638' => 'tar', 'TAR628G1548' => 'tar', 'TAR629G1079' => 'tar', 'TAR629G3413' => 'tar', 'THA.LOC104804249' => 'tha', 'THA.LOC104808315' => 'tha', 'THA.LOC104809238' => 'tha', 'THA.LOC104825484' => 'tha', 'Thecc.01G025500' => 'tca', 'Thecc.03G015800' => 'tca', 'Thecc.03G018000' => 'tca', 'Thecc.03G134800' => 'tca', 'Thecc.04G014700' => 'tca', 'Thhalv10006991m.g' => 'esa', 'Thhalv10012707m.g' => 'esa', 'Thhalv10015739m.g' => 'esa', 'Thhalv10024553m.g' => 'esa', 'Thhalv10024673m.g' => 'esa', 'Thhalv10029187m.g' => 'esa', 'TPR.G12971' => 'tpr', 'TPR.G29396' => 'tpr', 'TPR.G33376' => 'tpr', 'TPR.G35508' => 'tpr', 'TPR.G35516' => 'tpr', 'TPR.G37317' => 'tpr', 'TPR.G37389' => 'tpr', 'TPR.G37523' => 'tpr', 'TPR.G559' => 'tpr', 'TWI14G0070' => 'twi', 'TWI14G0729' => 'twi', 'TWI18G0596' => 'twi', 'TWI39G0780' => 'twi', 'TWI39G0850' => 'twi', 'TWI73G1052' => 'twi', 'unitig_52.g17485' => 'ugi', 'unitig_61.g26355' => 'ugi', 'vmacro01040' => 'vma', 'vmacro16731' => 'vma', 'vmacro18270' => 'vma', 'vmacro19142' => 'vma', 'vmacro19407' => 'vma', 'vmacro19408' => 'vma', 'vmacro21899' => 'vma', 'vmacro21900' => 'vma', 'vmacro21901' => 'vma', 'VMungo0251G0490' => 'vmu', 'VMungo0251G1748' => 'vmu', 'VMungo1309G0421' => 'vmu', 'Zm00001eb086500' => 'zma', 'Zm00001eb150680' => 'zma', 'Zm00001eb162330' => 'zma', 'Zm00001eb203130' => 'zma', 'Zm00001eb369480' => 'zma', 'Zm00001eb382340' => 'zma', 'Zm00001eb416360' => 'zma' ) $gf_id = 'HOM05D000902' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000902' ) $data_identifier = 'HOM05D000902' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 13, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 10, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 6, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 9, 'hma' => (int) 12, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 4, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 6, 'ppa' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 6, 'rch' => (int) 9, 'rsi' => (int) 9, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 12, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 3, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416360' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000902', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '663', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02470' => 'bna', 'A01p16260' => 'bna', 'A02p01680' => 'bna', 'A03p16600' => 'bna', 'A03p55660' => 'bna', 'A03p64160' => 'bna', 'A03p64170' => 'bna', 'A08p31900' => 'bna', 'A09p59530' => 'bna', 'A10p08230' => 'bna', 'A10p25090' => 'bna', 'Aa31LG3G7100' => 'aar', 'Aa31LG3G7110' => 'aar', 'Aa31LG6G13160' => 'aar', 'Aa31LG7G10770' => 'aar', 'Aa31LG7G3830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2723' => 'aag', 'Actinidia08045' => 'ach', 'Actinidia08888' => 'ach', 'Actinidia18333' => 'ach', 'Actinidia19334' => 'ach', 'Actinidia25552' => 'ach', 'Actinidia26089' => 'ach', 'Actinidia30615' => 'ach', 'Actinidia30616' => 'ach', 'Actinidia33083' => 'ach', 'Actinidia35762' => 'ach', 'Ah.02g110620' => 'amhyb', 'Ah.11g046390' => 'amhyb', 'AL1G31670' => 'aly', 'AL6G23730' => 'aly', 'AL7G14740' => 'aly', 'AL7G14750' => 'aly', 'AL7G14760' => 'aly', 'AL7G28220' => 'aly', 'AL8G24940' => 'aly', 'Aqoxy3G01665' => 'aox', 'Aqoxy3G02853' => 'aox', 'Aqoxy5G01513' => 'aox', 'Aqoxy5G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8SKA4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ75LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKDA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0LJZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7REX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZP4YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWX7I5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2QKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS0L9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPCD8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q161UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC7XCF' => 'arhy', 'AT1G19100' => 'ath', 'AT4G24970' => 'ath', 'AT4G36270' => 'ath', 'AT4G36280' => 'ath', 'AT4G36290' => 'ath', 'AT5G13130' => 'ath', 'AT5G50780' => 'ath', 'ATR0582G266' => 'atr', 'ATR0661G195' => 'atr', 'ATR1152G031' => 'atr', 'Atru.chr11.2382' => 'acertr', 'Atru.chr12.2337' => 'acertr', 'Atru.chr3.744' => 'acertr', 'Atru.chr6.1870' => 'acertr', 'Atru.chr9.2515' => 'acertr', 'AUR62004120' => 'cqu', 'AUR62005667' => 'cqu', 'AUR62007634' => 'cqu', 'AUR62008186' => 'cqu', 'AUR62008187' => 'cqu', 'AUR62008188' => 'cqu', 'AUR62027954' => 'cqu', 'AUR62028766' => 'cqu', 'AUR62028767' => 'cqu', 'AUR62028768' => 'cqu', 'AUR62028886' => 'cqu', 'AUR62029563' => 'cqu', 'AUR62038832' => 'cqu', 'BcaB01g04149' => 'bca', 'BcaB03g12940' => 'bca', 'BcaB03g13090' => 'bca', 'BcaB03g14466' => 'bca', 'BcaB05g24035' => 'bca', 'BcaC01g06050' => 'bca', 'BcaC04g19148' => 'bca', 'BcaC04g20761' => 'bca', 'BcaC06g32845' => 'bca', 'BcaC07g41274' => 'bca', 'BcaC09g50827' => 'bca', 'BcaNung00741' => 'bca', 'BcaNung00742' => 'bca', 'BcaNung01859' => 'bca', 'BcaNung03985' => 'bca', 'BcaNung03989' => 'bca', 'BcaNung05661' => 'bca', 'BolC1t00257H' => 'bol', 'BolC1t01956H' => 'bol', 'BolC2t06534H' => 'bol', 'BolC3t14334H' => 'bol', 'BolC5t30451H' => 'bol', 'BolC7t45880H' => 'bol', 'BolC7t46586H' => 'bol', 'BolC8t49301H' => 'bol', 'BolC8t51837H' => 'bol', 'BolC9t56822H' => 'bol', 'BolC9t59235H' => 'bol', 'BraA01t00234Z' => 'bra', 'BraA01t01563Z' => 'bra', 'BraA02t05147Z' => 'bra', 'BraA03t10947Z' => 'bra', 'BraA03t14633Z' => 'bra', 'BraA08t35112Z' => 'bra', 'BraA09t41330Z' => 'bra', 'BraA10t44570Z' => 'bra', 'C01p02670' => 'bna', 'C01p20260' => 'bna', 'C02p05890' => 'bna', 'C03p19530' => 'bna', 'C05p17470' => 'bna', 'C07p53900' => 'bna', 'C07p61630' => 'bna', 'C08p16800' => 'bna', 'C08p42810' => 'bna', 'C09p39480' => 'bna', 'C09p63980' => 'bna', 'CAN.G1001.7' => 'can', 'CAN.G1034.55' => 'can', 'CAN.G143.7' => 'can', 'CAN.G3340.1' => 'can', 'CAN.G358.19' => 'can', 'CAN.G373.2' => 'can', 'CAN.G674.16' => 'can', 'CAN.G674.17' => 'can', 'CAN.G674.18' => 'can', 'CAN.G732.2' => 'can', 'CAN.G732.3' => 'can', 'CAN.G993.39' => 'can', 'CANSAT01G2052' => 'cansat', 'CANSAT80G0070' => 'cansat', 'CANSAT80G0483' => 'cansat', 'CANSAT80G0625' => 'cansat', 'CARHR019690' => 'chi', 'CARHR080280' => 'chi', 'CARHR152750' => 'chi', 'CARHR152760' => 'chi', 'CARHR152770' => 'chi', 'CARHR200340' => 'chi', 'CARHR232370' => 'chi', 'CARHR244670' => 'chi', 'CARHR244680' => 'chi', 'CARHR257520' => 'chi', 'Carub.0001s1872' => 'cru', 'Carub.0006s1130' => 'cru', 'Carub.0007s0396' => 'cru', 'Carub.0007s0397' => 'cru', 'Carub.0007s1608' => 'cru', 'Carub.0008s1068' => 'cru', 'Carub.0008s1077' => 'cru', 'Ca_16158_v3' => 'car', 'Ca_17571_v3' => 'car', 'Ca_21936_v3' => 'car', 'Ca_22350_v3' => 'car', 'CBR_g22445' => 'cbr', 'CBR_g26290' => 'cbr', 'Cc04_g09610' => 'ccan', 'Cc04_g12280' => 'ccan', 'Cc07_g10230' => 'ccan', 'CDE02G0093' => 'cde', 'CDE02G0701' => 'cde', 'CDE04G1050' => 'cde', 'CDE05G1833' => 'cde', 'CDE05G3058' => 'cde', 'CDE05G3380' => 'cde', 'CDE06G0536' => 'cde', 'Cfa006923' => 'cfa', 'Cfa009402' => 'cfa', 'Cfa018751' => 'cfa', 'Cfa019164' => 'cfa', 'Cfa022935' => 'cfa', 'Ciclev10019081m.g' => 'ccl', 'Ciclev10025076m.g' => 'ccl', 'Ciclev10030712m.g' => 'ccl', 'Ciclev10033760m.g' => 'ccl', 'CiPaw.05G105600' => 'cil', 'CiPaw.08G136700' => 'cil', 'CiPaw.11G003900' => 'cil', 'CiPaw.11G023700' => 'cil', 'CiPaw.12G003700' => 'cil', 'ClCG06G017100' => 'cla', 'ClCG06G018110' => 'cla', 'ClCG07G008800' => 'cla', 'ClCG07G015330' => 'cla', 'COL.COLO4_13698' => 'col', 'COL.COLO4_16659' => 'col', 'COL.COLO4_21986' => 'col', 'COL.COLO4_24049' => 'col', 'COL.COLO4_29061' => 'col', 'COL.COLO4_29075' => 'col', 'COL.COLO4_30094' => 'col', 'Cpa.g.c33689' => 'cpa', 'Cpa.g.sc108.39' => 'cpa', 'Cpa.g.sc108.41' => 'cpa', 'Cpa.g.sc1163.1' => 'cpa', 'Cpa.g.sc4.155' => 'cpa', 'Cpa.g.sc6.194' => 'cpa', 'CsaV3_1G000340' => 'csa', 'CsaV3_1G001400' => 'csa', 'CsaV3_4G002220' => 'csa', 'CsaV3_4G005370' => 'csa', 'CSS0007487' => 'camsi', 'CSS0008066' => 'camsi', 'CSS0009120' => 'camsi', 'CSS0015512' => 'camsi', 'CSS0022409' => 'camsi', 'CSS0025358' => 'camsi', 'CSS0044547' => 'camsi', 'DCAR_013057' => 'dca', 'DCAR_015058' => 'dca', 'DCAR_016027' => 'dca', 'DCAR_017327' => 'dca', 'DCAR_020743' => 'dca', 'DCAR_026157' => 'dca', 'DCAR_032339' => 'dca', 'DCAR_032340' => 'dca', 'Dinv11200' => 'din', 'Dinv11201' => 'din', 'Dinv20631' => 'din', 'Dinv23182' => 'din', 'Dinv33466' => 'din', 'Dinv33583' => 'din', 'Dinv38565' => 'din', 'Duzib068G0200' => 'dzi', 'Duzib147G0132' => 'dzi', 'Duzib147G0635' => 'dzi', 'Duzib205G1670' => 'dzi', 'Duzib251G0606' => 'dzi', 'ECA232G3336' => 'eca', 'ECA232G3763' => 'eca', 'ECA232G4845' => 'eca', 'ECA234G1607' => 'eca', 'ECA246G0932' => 'eca', 'ECA247G0781' => 'eca', 'ECA247G1932' => 'eca', 'ECA247G2079' => 'eca', 'ECA247G3338' => 'eca', 'ECA247G4115' => 'eca', 'EL10Ac3g06552' => 'bvu', 'EL10Ac5g10721' => 'bvu', 'EL10Ac5g10722' => 'bvu', 'EL10Ac5g10723' => 'bvu', 'EL10Ac5g11361' => 'bvu', 'EL10Ac6g13553' => 'bvu', 'EL10As8g23872' => 'bvu', 'Eucgr.B00250' => 'egr', 'Eucgr.B00251' => 'egr', 'Eucgr.B03533' => 'egr', 'Eucgr.I02381' => 'egr', 'Eucgr.K02700' => 'egr', 'FAN02G0174' => 'fan', 'FAN02G3146' => 'fan', 'FAN04G1672' => 'fan', 'FAN04G2273' => 'fan', 'FAN05G2791' => 'fan', 'FAN05G4035' => 'fan', 'FAN07G0834' => 'fan', 'FAN08G1198' => 'fan', 'FAN09G4182' => 'fan', 'FAN12G0496' => 'fan', 'FAN13G1027' => 'fan', 'FAN13G2951' => 'fan', 'FAN14G0705' => 'fan', 'FAN14G0720' => 'fan', 'FAN17G0201' => 'fan', 'FAN17G2665' => 'fan', 'FAN18G1456' => 'fan', 'FAN18G1525' => 'fan', 'FAN18G3500' => 'fan', 'FAN28G2670' => 'fan', 'FvH4_1g12391' => 'fve', 'FvH4_4g23220' => 'fve', 'FvH4_5g08810' => 'fve', 'FvH4_5g28960' => 'fve', 'FvH4_6g42820' => 'fve', 'FvH4_6g51110' => 'fve', 'Glyma.02G051802' => 'gma', 'Glyma.04G185300' => 'gma', 'Glyma.05G202900' => 'gma', 'Glyma.08G010300' => 'gma', 'Glyma.16G131900' => 'gma', 'Glyma.17G087900' => 'gma', 'Gohir.A07G048600' => 'ghi', 'Gohir.A11G179000' => 'ghi', 'Gohir.A12G140900' => 'ghi', 'Gohir.A12G140950' => 'ghi', 'Gohir.A12G191700' => 'ghi', 'Gohir.A13G086300' => 'ghi', 'Gohir.D07G052900' => 'ghi', 'Gohir.D11G186600' => 'ghi', 'Gohir.D12G145575' => 'ghi', 'Gohir.D12G145650' => 'ghi', 'Gohir.D12G145725' => 'ghi', 'Gohir.D12G194050' => 'ghi', 'Gohir.D13G091800' => 'ghi', 'Gorai.001G055900' => 'gra', 'Gorai.007G198400' => 'gra', 'Gorai.008G157000' => 'gra', 'Gorai.008G157100' => 'gra', 'Gorai.008G208700' => 'gra', 'Gorai.010G138700' => 'gra', 'GSVIVG01000977001' => 'vvi', 'GSVIVG01007708001' => 'vvi', 'GSVIVG01008587001' => 'vvi', 'GSVIVG01018849001' => 'vvi', 'GSVIVG01032432001' => 'vvi', 'HanXRQChr02g0034131' => 'han', 'HanXRQChr02g0035981' => 'han', 'HanXRQChr02g0035991' => 'han', 'HanXRQChr05g0155611' => 'han', 'HanXRQChr05g0155621' => 'han', 'HanXRQChr08g0236501' => 'han', 'HanXRQChr09g0261321' => 'han', 'HanXRQChr09g0272081' => 'han', 'HanXRQChr10g0310741' => 'han', 'HanXRQChr11g0325591' => 'han', 'HanXRQChr12g0385691' => 'han', 'HanXRQChr13g0387801' => 'han', 'HanXRQChr15g0463011' => 'han', 'Haze_03826' => 'cav', 'Haze_03827' => 'cav', 'Haze_07183' => 'cav', 'Haze_07537' => 'cav', 'Haze_07539' => 'cav', 'Haze_12461' => 'cav', 'Haze_16115' => 'cav', 'Haze_16808' => 'cav', 'Haze_18531' => 'cav', 'Hma1.2p1_0046F.1_g026700' => 'hma', 'Hma1.2p1_0046F.1_g026710' => 'hma', 'Hma1.2p1_0168F.1_g074340' => 'hma', 'Hma1.2p1_0266F.1_g107030' => 'hma', 'Hma1.2p1_0266F.1_g107060' => 'hma', 'Hma1.2p1_0275F.1_g110510' => 'hma', 'Hma1.2p1_0592F.1_g185490' => 'hma', 'Hma1.2p1_0592F.1_g185500' => 'hma', 'Hma1.2p1_0592F.1_g185510' => 'hma', 'Hma1.2p1_0592F.1_g185520' => 'hma', 'Hma1.2p1_0592F.1_g185530' => 'hma', 'Hma1.2p1_0818F.1_g223450' => 'hma', 'HPP92_009708' => 'vpl', 'HPP92_009793' => 'vpl', 'HPP92_009796' => 'vpl', 'HPP92_009797' => 'vpl', 'HPP92_014940' => 'vpl', 'HPP92_014988' => 'vpl', 'Hund02463' => 'sun', 'Hund02760' => 'sun', 'Hund05071' => 'sun', 'Hund10108' => 'sun', 'Hund11204' => 'sun', 'Hund14016' => 'sun', 'Hund16464' => 'sun', 'Lalb_Chr09g0333391' => 'lal', 'Lalb_Chr11g0070461' => 'lal', 'Lalb_Chr12g0201671' => 'lal', 'Lalb_Chr13g0297161' => 'lal', 'Lj1g0002823' => 'lja', 'Lj3C1074T6' => 'lonja', 'Lj4A212T28' => 'lonja', 'Lj4g0005516' => 'lja', 'Lj4g0013705' => 'lja', 'Lj4g0027865' => 'lja', 'Lj5C92G16' => 'lonja', 'Lj5C92T12' => 'lonja', 'Lj7C596T3' => 'lonja', 'Lj9A446G59' => 'lonja', 'Lj9A482G21' => 'lonja', 'Lsat_1_v5_gn_1_28261' => 'lsa', 'Lsat_1_v5_gn_1_28281' => 'lsa', 'Lsat_1_v5_gn_1_32721' => 'lsa', 'Lsat_1_v5_gn_4_151760' => 'lsa', 'Lsat_1_v5_gn_4_2120' => 'lsa', 'Lsat_1_v5_gn_4_75761' => 'lsa', 'Lsat_1_v5_gn_5_10920' => 'lsa', 'Manes.02G099900' => 'mes', 'Manes.11G096200' => 'mes', 'Manes.12G007200' => 'mes', 'Manes.14G048300' => 'mes', 'Manes.17G114700' => 'mes', 'Mapoly0002s0070' => 'mpo', 'Mapoly0029s0099' => 'mpo', 'MBI07_g24742_MAGBIO' => 'mbi', 'MBI10_g27988_MAGBIO' => 'mbi', 'MBI11_g13057_MAGBIO' => 'mbi', 'MD02G1137200' => 'mdo', 'MD06G1137200' => 'mdo', 'MD07G1122300' => 'mdo', 'MD09G1078200' => 'mdo', 'MD13G1123700' => 'mdo', 'MD14G1151900' => 'mdo', 'MD17G1030900' => 'mdo', 'MD17G1068200' => 'mdo', 'MD17G1068600' => 'mdo', 'Medtr3g077540' => 'mtr', 'Medtr4g105530' => 'mtr', 'Medtr8g076580' => 'mtr', 'Medtr8g076590' => 'mtr', 'Medtr8g096410' => 'mtr', 'MELO3C016411.2' => 'cme', 'MELO3C017780.2' => 'cme', 'MELO3C022560.2' => 'cme', 'MELO3C026187.2' => 'cme', 'MELO3C026286.2' => 'cme', 'MELO3C032854.2' => 'cme', 'Migut.H02495' => 'egut', 'Migut.I00561' => 'egut', 'Migut.K01015' => 'egut', 'Migut.K01016' => 'egut', 'Migut.L00743' => 'egut', 'Migut.L00744' => 'egut', 'Migut.L00746' => 'egut', 'Migut.L00798' => 'egut', 'Migut.L00799' => 'egut', 'Migut.N02096' => 'egut', 'MSTRG.11259' => 'ama', 'MSTRG.23142' => 'ama', 'MSTRG.2499' => 'ama', 'Nitab4.5_0000003g0730' => 'nta', 'Nitab4.5_0000137g0020' => 'nta', 'Nitab4.5_0000721g0210' => 'nta', 'Nitab4.5_0000723g0050' => 'nta', 'Nitab4.5_0000913g0070' => 'nta', 'Nitab4.5_0001332g0040' => 'nta', 'Nitab4.5_0001771g0050' => 'nta', 'Nitab4.5_0001918g0050' => 'nta', 'Nitab4.5_0002686g0030' => 'nta', 'Nitab4.5_0003156g0020' => 'nta', 'Nitab4.5_0003383g0040' => 'nta', 'Nitab4.5_0003918g0010' => 'nta', 'Nitab4.5_0006760g0010' => 'nta', 'Nn1g05981' => 'nnu', 'Nn1g06288' => 'nnu', 'Nn3g16371' => 'nnu', 'Nn3g16786' => 'nnu', 'Nn4g22232' => 'nnu', 'Oeu005144.1' => 'oeu', 'Oeu005145.1' => 'oeu', 'Oeu011348.1' => 'oeu', 'Oeu016415.1' => 'oeu', 'Oeu023501.1' => 'oeu', 'Oeu044473.1' => 'oeu', 'Oeu048892.2' => 'oeu', 'Os01g0549200' => 'osa', 'Os02g0469300' => 'osa', 'Os04g0311100' => 'osa', 'Os06g0474900' => 'osa', 'Os10g0181700' => 'osa', 'Os11g0454800' => 'osa', 'Peaxi162Scf00037g00714' => 'pax', 'Peaxi162Scf00084g01217' => 'pax', 'Peaxi162Scf00257g00217' => 'pax', 'Peaxi162Scf00516g00215' => 'pax', 'Peaxi162Scf00689g00123' => 'pax', 'PGR044G2719' => 'pgr', 'PGR083G1360' => 'pgr', 'PGR102G2849' => 'pgr', 'PGR119G2534' => 'pgr', 'PGSC0003DMG400003538' => 'stu', 'PGSC0003DMG400028138' => 'stu', 'PGSC0003DMG400031732' => 'stu', 'PGSC0003DMG400038165' => 'stu', 'Phvul.002G284600' => 'pvu', 'Phvul.003G258200' => 'pvu', 'Phvul.009G176500' => 'pvu', 'Potri.003G167201' => 'ptr', 'Potri.005G118400' => 'ptr', 'Potri.012G089000' => 'ptr', 'Potri.012G102800' => 'ptr', 'Potri.015G079400' => 'ptr', 'Potri.015G100900' => 'ptr', 'Pp3c14_9810' => 'ppa', 'Pp3c15_10450' => 'ppa', 'Pp3c20_19150' => 'ppa', 'Pp3c23_12740' => 'ppa', 'Pp3c23_6310' => 'ppa', 'Pp3c24_3720' => 'ppa', 'Pp3c27_2580' => 'ppa', 'Pp3c9_8990' => 'ppa', 'PRCOL_00002854' => 'pco', 'Prupe.1G221200' => 'ppe', 'Prupe.3G289000' => 'ppe', 'Prupe.5G147000' => 'ppe', 'Prupe.6G157300' => 'ppe', 'Prupe.7G163400' => 'ppe', 'Psat0s2177g0040' => 'psa', 'Psat3g174760' => 'psa', 'Psat3g192160' => 'psa', 'Psat4g058520' => 'psa', 'Psat4g096840' => 'psa', 'Psat7g037320' => 'psa', 'PSO017G1274' => 'pso', 'PSO017G5166' => 'pso', 'PSO063G4558' => 'pso', 'PSO170G4458' => 'pso', 'PSO170G5005' => 'pso', 'PSO210G6156' => 'pso', 'PSO210G6635' => 'pso', 'PSO210G7397' => 'pso', 'PSO210G7700' => 'pso', 'PSO455G0035' => 'pso', 'PSO455G0180' => 'pso', 'PSO478G4515' => 'pso', 'PSO832G1305' => 'pso', 'PSO832G3489' => 'pso', 'QL02p075247' => 'qlo', 'QL03p051148' => 'qlo', 'QL05p010313' => 'qlo', 'QL06p034627' => 'qlo', 'QL10p001889' => 'qlo', 'QL10p010846' => 'qlo', 'RcHm_v2.0_Chr1g0350621' => 'rch', 'RcHm_v2.0_Chr1g0350641' => 'rch', 'RcHm_v2.0_Chr2g0092891' => 'rch', 'RcHm_v2.0_Chr2g0100251' => 'rch', 'RcHm_v2.0_Chr2g0158661' => 'rch', 'RcHm_v2.0_Chr2g0172741' => 'rch', 'RcHm_v2.0_Chr4g0429571' => 'rch', 'RcHm_v2.0_Chr5g0042471' => 'rch', 'RcHm_v2.0_Chr7g0189451' => 'rch', 'Rhsim08G0052000' => 'rsi', 'Rhsim08G0174400' => 'rsi', 'Rhsim08G0193200' => 'rsi', 'Rhsim10G0214800' => 'rsi', 'Rhsim10G0214900' => 'rsi', 'Rhsim10G0215000' => 'rsi', 'Rhsim12G0022900' => 'rsi', 'Rhsim12G0177500' => 'rsi', 'Rhsim12G0177700' => 'rsi', 'Sabra03G0122600' => 'sbr', 'Sabra05G0097400' => 'sbr', 'Sabra12G0064100' => 'sbr', 'Sabra15G0121300' => 'sbr', 'SalBow2G0642' => 'sbo', 'SalBow5G2667' => 'sbo', 'SalBow5G4873' => 'sbo', 'SalBow8G2395' => 'sbo', 'Sc03g0003290' => 'sci', 'Sc10g0010130' => 'sci', 'Sc22g0003650' => 'sci', 'Sed0001603' => 'sed', 'Sed0004259' => 'sed', 'Sed0006789' => 'sed', 'Sed0011838' => 'sed', 'Sed0012964' => 'sed', 'Sed0016383' => 'sed', 'Sed0019010' => 'sed', 'Sed0020188' => 'sed', 'SEGI_04702' => 'sgi', 'SEGI_17231' => 'sgi', 'SEGI_18877' => 'sgi', 'SEGI_25196' => 'sgi', 'SEGI_25515' => 'sgi', 'SEGI_28445' => 'sgi', 'SEGI_37452' => 'sgi', 'SGA_v2.0_scaffold188G40336' => 'sas', 'SGA_v2.0_scaffold228G43247' => 'sas', 'SGA_v2.0_scaffold280G46853' => 'sas', 'SGA_v2.0_scaffold34G13808' => 'sas', 'SGA_v2.0_scaffold40G15576' => 'sas', 'SGA_v2.0_scaffold611G53188' => 'sas', 'SGA_v2.0_scaffold78G25461' => 'sas', 'SGA_v2.0_scaffold90G27888' => 'sas', 'SHI08601' => 'shi', 'SHI08606' => 'shi', 'SHI17117' => 'shi', 'SHI17119' => 'shi', 'SMO118G0201' => 'smo', 'SMO169G0247' => 'smo', 'SMO176G0006' => 'smo', 'SMO176G0015' => 'smo', 'SMO202G0006' => 'smo', 'SMO240G0050' => 'smo', 'SMO286G0009' => 'smo', 'SMO338G0033' => 'smo', 'SMO356G0533' => 'smo', 'SMO364G0382' => 'smo', 'SMO367G0166' => 'smo', 'SMO367G1098' => 'smo', 'Solyc01g009920.3' => 'sly', 'Solyc01g099300.3' => 'sly', 'Solyc02g084700.3' => 'sly', 'Solyc03g097520.3' => 'sly', 'Solyc06g071580.3' => 'sly', 'Solyc10g081760.3' => 'sly', 'Sopen01g005480' => 'spe', 'Sopen01g042850' => 'spe', 'Sopen02g029370' => 'spe', 'Sopen03g028280' => 'spe', 'Sopen06g027870' => 'spe', 'Sopen10g032270' => 'spe', 'Sp5g18180' => 'spa', 'Sp6g12880' => 'spa', 'Sp6g30850' => 'spa', 'Sp7g22960' => 'spa', 'Sp7g34010' => 'spa', 'SpUn1326_0010' => 'spa', 'TAR371G0242' => 'tar', 'TAR622G0638' => 'tar', 'TAR628G1548' => 'tar', 'TAR629G1079' => 'tar', 'TAR629G3413' => 'tar', 'THA.LOC104804249' => 'tha', 'THA.LOC104808315' => 'tha', 'THA.LOC104809238' => 'tha', 'THA.LOC104825484' => 'tha', 'Thecc.01G025500' => 'tca', 'Thecc.03G015800' => 'tca', 'Thecc.03G018000' => 'tca', 'Thecc.03G134800' => 'tca', 'Thecc.04G014700' => 'tca', 'Thhalv10006991m.g' => 'esa', 'Thhalv10012707m.g' => 'esa', 'Thhalv10015739m.g' => 'esa', 'Thhalv10024553m.g' => 'esa', 'Thhalv10024673m.g' => 'esa', 'Thhalv10029187m.g' => 'esa', 'TPR.G12971' => 'tpr', 'TPR.G29396' => 'tpr', 'TPR.G33376' => 'tpr', 'TPR.G35508' => 'tpr', 'TPR.G35516' => 'tpr', 'TPR.G37317' => 'tpr', 'TPR.G37389' => 'tpr', 'TPR.G37523' => 'tpr', 'TPR.G559' => 'tpr', 'TWI14G0070' => 'twi', 'TWI14G0729' => 'twi', 'TWI18G0596' => 'twi', 'TWI39G0780' => 'twi', 'TWI39G0850' => 'twi', 'TWI73G1052' => 'twi', 'unitig_52.g17485' => 'ugi', 'unitig_61.g26355' => 'ugi', 'vmacro01040' => 'vma', 'vmacro16731' => 'vma', 'vmacro18270' => 'vma', 'vmacro19142' => 'vma', 'vmacro19407' => 'vma', 'vmacro19408' => 'vma', 'vmacro21899' => 'vma', 'vmacro21900' => 'vma', 'vmacro21901' => 'vma', 'VMungo0251G0490' => 'vmu', 'VMungo0251G1748' => 'vmu', 'VMungo1309G0421' => 'vmu', 'Zm00001eb086500' => 'zma', 'Zm00001eb150680' => 'zma', 'Zm00001eb162330' => 'zma', 'Zm00001eb203130' => 'zma', 'Zm00001eb369480' => 'zma', 'Zm00001eb382340' => 'zma', 'Zm00001eb416360' => 'zma' ), 'gf_id' => 'HOM05D000902', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000902' ), 'data_identifier' => 'HOM05D000902', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000902', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '663', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02470' => 'bna', 'A01p16260' => 'bna', 'A02p01680' => 'bna', 'A03p16600' => 'bna', 'A03p55660' => 'bna', 'A03p64160' => 'bna', 'A03p64170' => 'bna', 'A08p31900' => 'bna', 'A09p59530' => 'bna', 'A10p08230' => 'bna', 'A10p25090' => 'bna', 'Aa31LG3G7100' => 'aar', 'Aa31LG3G7110' => 'aar', 'Aa31LG6G13160' => 'aar', 'Aa31LG7G10770' => 'aar', 'Aa31LG7G3830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2723' => 'aag', 'Actinidia08045' => 'ach', 'Actinidia08888' => 'ach', 'Actinidia18333' => 'ach', 'Actinidia19334' => 'ach', 'Actinidia25552' => 'ach', 'Actinidia26089' => 'ach', 'Actinidia30615' => 'ach', 'Actinidia30616' => 'ach', 'Actinidia33083' => 'ach', 'Actinidia35762' => 'ach', 'Ah.02g110620' => 'amhyb', 'Ah.11g046390' => 'amhyb', 'AL1G31670' => 'aly', 'AL6G23730' => 'aly', 'AL7G14740' => 'aly', 'AL7G14750' => 'aly', 'AL7G14760' => 'aly', 'AL7G28220' => 'aly', 'AL8G24940' => 'aly', 'Aqoxy3G01665' => 'aox', 'Aqoxy3G02853' => 'aox', 'Aqoxy5G01513' => 'aox', 'Aqoxy5G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8SKA4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ75LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKDA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0LJZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7REX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZP4YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWX7I5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2QKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS0L9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPCD8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q161UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC7XCF' => 'arhy', 'AT1G19100' => 'ath', 'AT4G24970' => 'ath', 'AT4G36270' => 'ath', 'AT4G36280' => 'ath', 'AT4G36290' => 'ath', 'AT5G13130' => 'ath', 'AT5G50780' => 'ath', 'ATR0582G266' => 'atr', 'ATR0661G195' => 'atr', 'ATR1152G031' => 'atr', 'Atru.chr11.2382' => 'acertr', 'Atru.chr12.2337' => 'acertr', 'Atru.chr3.744' => 'acertr', 'Atru.chr6.1870' => 'acertr', 'Atru.chr9.2515' => 'acertr', 'AUR62004120' => 'cqu', 'AUR62005667' => 'cqu', 'AUR62007634' => 'cqu', 'AUR62008186' => 'cqu', 'AUR62008187' => 'cqu', 'AUR62008188' => 'cqu', 'AUR62027954' => 'cqu', 'AUR62028766' => 'cqu', 'AUR62028767' => 'cqu', 'AUR62028768' => 'cqu', 'AUR62028886' => 'cqu', 'AUR62029563' => 'cqu', 'AUR62038832' => 'cqu', 'BcaB01g04149' => 'bca', 'BcaB03g12940' => 'bca', 'BcaB03g13090' => 'bca', 'BcaB03g14466' => 'bca', 'BcaB05g24035' => 'bca', 'BcaC01g06050' => 'bca', 'BcaC04g19148' => 'bca', 'BcaC04g20761' => 'bca', 'BcaC06g32845' => 'bca', 'BcaC07g41274' => 'bca', 'BcaC09g50827' => 'bca', 'BcaNung00741' => 'bca', 'BcaNung00742' => 'bca', 'BcaNung01859' => 'bca', 'BcaNung03985' => 'bca', 'BcaNung03989' => 'bca', 'BcaNung05661' => 'bca', 'BolC1t00257H' => 'bol', 'BolC1t01956H' => 'bol', 'BolC2t06534H' => 'bol', 'BolC3t14334H' => 'bol', 'BolC5t30451H' => 'bol', 'BolC7t45880H' => 'bol', 'BolC7t46586H' => 'bol', 'BolC8t49301H' => 'bol', 'BolC8t51837H' => 'bol', 'BolC9t56822H' => 'bol', 'BolC9t59235H' => 'bol', 'BraA01t00234Z' => 'bra', 'BraA01t01563Z' => 'bra', 'BraA02t05147Z' => 'bra', 'BraA03t10947Z' => 'bra', 'BraA03t14633Z' => 'bra', 'BraA08t35112Z' => 'bra', 'BraA09t41330Z' => 'bra', 'BraA10t44570Z' => 'bra', 'C01p02670' => 'bna', 'C01p20260' => 'bna', 'C02p05890' => 'bna', 'C03p19530' => 'bna', 'C05p17470' => 'bna', 'C07p53900' => 'bna', 'C07p61630' => 'bna', 'C08p16800' => 'bna', 'C08p42810' => 'bna', 'C09p39480' => 'bna', 'C09p63980' => 'bna', 'CAN.G1001.7' => 'can', 'CAN.G1034.55' => 'can', 'CAN.G143.7' => 'can', 'CAN.G3340.1' => 'can', 'CAN.G358.19' => 'can', 'CAN.G373.2' => 'can', 'CAN.G674.16' => 'can', 'CAN.G674.17' => 'can', 'CAN.G674.18' => 'can', 'CAN.G732.2' => 'can', 'CAN.G732.3' => 'can', 'CAN.G993.39' => 'can', 'CANSAT01G2052' => 'cansat', 'CANSAT80G0070' => 'cansat', 'CANSAT80G0483' => 'cansat', 'CANSAT80G0625' => 'cansat', 'CARHR019690' => 'chi', 'CARHR080280' => 'chi', 'CARHR152750' => 'chi', 'CARHR152760' => 'chi', 'CARHR152770' => 'chi', 'CARHR200340' => 'chi', 'CARHR232370' => 'chi', 'CARHR244670' => 'chi', 'CARHR244680' => 'chi', 'CARHR257520' => 'chi', 'Carub.0001s1872' => 'cru', 'Carub.0006s1130' => 'cru', 'Carub.0007s0396' => 'cru', 'Carub.0007s0397' => 'cru', 'Carub.0007s1608' => 'cru', 'Carub.0008s1068' => 'cru', 'Carub.0008s1077' => 'cru', 'Ca_16158_v3' => 'car', 'Ca_17571_v3' => 'car', 'Ca_21936_v3' => 'car', 'Ca_22350_v3' => 'car', 'CBR_g22445' => 'cbr', 'CBR_g26290' => 'cbr', 'Cc04_g09610' => 'ccan', 'Cc04_g12280' => 'ccan', 'Cc07_g10230' => 'ccan', 'CDE02G0093' => 'cde', 'CDE02G0701' => 'cde', 'CDE04G1050' => 'cde', 'CDE05G1833' => 'cde', 'CDE05G3058' => 'cde', 'CDE05G3380' => 'cde', 'CDE06G0536' => 'cde', 'Cfa006923' => 'cfa', 'Cfa009402' => 'cfa', 'Cfa018751' => 'cfa', 'Cfa019164' => 'cfa', 'Cfa022935' => 'cfa', 'Ciclev10019081m.g' => 'ccl', 'Ciclev10025076m.g' => 'ccl', 'Ciclev10030712m.g' => 'ccl', 'Ciclev10033760m.g' => 'ccl', 'CiPaw.05G105600' => 'cil', 'CiPaw.08G136700' => 'cil', 'CiPaw.11G003900' => 'cil', 'CiPaw.11G023700' => 'cil', 'CiPaw.12G003700' => 'cil', 'ClCG06G017100' => 'cla', 'ClCG06G018110' => 'cla', 'ClCG07G008800' => 'cla', 'ClCG07G015330' => 'cla', 'COL.COLO4_13698' => 'col', 'COL.COLO4_16659' => 'col', 'COL.COLO4_21986' => 'col', 'COL.COLO4_24049' => 'col', 'COL.COLO4_29061' => 'col', 'COL.COLO4_29075' => 'col', 'COL.COLO4_30094' => 'col', 'Cpa.g.c33689' => 'cpa', 'Cpa.g.sc108.39' => 'cpa', 'Cpa.g.sc108.41' => 'cpa', 'Cpa.g.sc1163.1' => 'cpa', 'Cpa.g.sc4.155' => 'cpa', 'Cpa.g.sc6.194' => 'cpa', 'CsaV3_1G000340' => 'csa', 'CsaV3_1G001400' => 'csa', 'CsaV3_4G002220' => 'csa', 'CsaV3_4G005370' => 'csa', 'CSS0007487' => 'camsi', 'CSS0008066' => 'camsi', 'CSS0009120' => 'camsi', 'CSS0015512' => 'camsi', 'CSS0022409' => 'camsi', 'CSS0025358' => 'camsi', 'CSS0044547' => 'camsi', 'DCAR_013057' => 'dca', 'DCAR_015058' => 'dca', 'DCAR_016027' => 'dca', 'DCAR_017327' => 'dca', 'DCAR_020743' => 'dca', 'DCAR_026157' => 'dca', 'DCAR_032339' => 'dca', 'DCAR_032340' => 'dca', 'Dinv11200' => 'din', 'Dinv11201' => 'din', 'Dinv20631' => 'din', 'Dinv23182' => 'din', 'Dinv33466' => 'din', 'Dinv33583' => 'din', 'Dinv38565' => 'din', 'Duzib068G0200' => 'dzi', 'Duzib147G0132' => 'dzi', 'Duzib147G0635' => 'dzi', 'Duzib205G1670' => 'dzi', 'Duzib251G0606' => 'dzi', 'ECA232G3336' => 'eca', 'ECA232G3763' => 'eca', 'ECA232G4845' => 'eca', 'ECA234G1607' => 'eca', 'ECA246G0932' => 'eca', 'ECA247G0781' => 'eca', 'ECA247G1932' => 'eca', 'ECA247G2079' => 'eca', 'ECA247G3338' => 'eca', 'ECA247G4115' => 'eca', 'EL10Ac3g06552' => 'bvu', 'EL10Ac5g10721' => 'bvu', 'EL10Ac5g10722' => 'bvu', 'EL10Ac5g10723' => 'bvu', 'EL10Ac5g11361' => 'bvu', 'EL10Ac6g13553' => 'bvu', 'EL10As8g23872' => 'bvu', 'Eucgr.B00250' => 'egr', 'Eucgr.B00251' => 'egr', 'Eucgr.B03533' => 'egr', 'Eucgr.I02381' => 'egr', 'Eucgr.K02700' => 'egr', 'FAN02G0174' => 'fan', 'FAN02G3146' => 'fan', 'FAN04G1672' => 'fan', 'FAN04G2273' => 'fan', 'FAN05G2791' => 'fan', 'FAN05G4035' => 'fan', 'FAN07G0834' => 'fan', 'FAN08G1198' => 'fan', 'FAN09G4182' => 'fan', 'FAN12G0496' => 'fan', 'FAN13G1027' => 'fan', 'FAN13G2951' => 'fan', 'FAN14G0705' => 'fan', 'FAN14G0720' => 'fan', 'FAN17G0201' => 'fan', 'FAN17G2665' => 'fan', 'FAN18G1456' => 'fan', 'FAN18G1525' => 'fan', 'FAN18G3500' => 'fan', 'FAN28G2670' => 'fan', 'FvH4_1g12391' => 'fve', 'FvH4_4g23220' => 'fve', 'FvH4_5g08810' => 'fve', 'FvH4_5g28960' => 'fve', 'FvH4_6g42820' => 'fve', 'FvH4_6g51110' => 'fve', 'Glyma.02G051802' => 'gma', 'Glyma.04G185300' => 'gma', 'Glyma.05G202900' => 'gma', 'Glyma.08G010300' => 'gma', 'Glyma.16G131900' => 'gma', 'Glyma.17G087900' => 'gma', 'Gohir.A07G048600' => 'ghi', 'Gohir.A11G179000' => 'ghi', 'Gohir.A12G140900' => 'ghi', 'Gohir.A12G140950' => 'ghi', 'Gohir.A12G191700' => 'ghi', 'Gohir.A13G086300' => 'ghi', 'Gohir.D07G052900' => 'ghi', 'Gohir.D11G186600' => 'ghi', 'Gohir.D12G145575' => 'ghi', 'Gohir.D12G145650' => 'ghi', 'Gohir.D12G145725' => 'ghi', 'Gohir.D12G194050' => 'ghi', 'Gohir.D13G091800' => 'ghi', 'Gorai.001G055900' => 'gra', 'Gorai.007G198400' => 'gra', 'Gorai.008G157000' => 'gra', 'Gorai.008G157100' => 'gra', 'Gorai.008G208700' => 'gra', 'Gorai.010G138700' => 'gra', 'GSVIVG01000977001' => 'vvi', 'GSVIVG01007708001' => 'vvi', 'GSVIVG01008587001' => 'vvi', 'GSVIVG01018849001' => 'vvi', 'GSVIVG01032432001' => 'vvi', 'HanXRQChr02g0034131' => 'han', 'HanXRQChr02g0035981' => 'han', 'HanXRQChr02g0035991' => 'han', 'HanXRQChr05g0155611' => 'han', 'HanXRQChr05g0155621' => 'han', 'HanXRQChr08g0236501' => 'han', 'HanXRQChr09g0261321' => 'han', 'HanXRQChr09g0272081' => 'han', 'HanXRQChr10g0310741' => 'han', 'HanXRQChr11g0325591' => 'han', 'HanXRQChr12g0385691' => 'han', 'HanXRQChr13g0387801' => 'han', 'HanXRQChr15g0463011' => 'han', 'Haze_03826' => 'cav', 'Haze_03827' => 'cav', 'Haze_07183' => 'cav', 'Haze_07537' => 'cav', 'Haze_07539' => 'cav', 'Haze_12461' => 'cav', 'Haze_16115' => 'cav', 'Haze_16808' => 'cav', 'Haze_18531' => 'cav', 'Hma1.2p1_0046F.1_g026700' => 'hma', 'Hma1.2p1_0046F.1_g026710' => 'hma', 'Hma1.2p1_0168F.1_g074340' => 'hma', 'Hma1.2p1_0266F.1_g107030' => 'hma', 'Hma1.2p1_0266F.1_g107060' => 'hma', 'Hma1.2p1_0275F.1_g110510' => 'hma', 'Hma1.2p1_0592F.1_g185490' => 'hma', 'Hma1.2p1_0592F.1_g185500' => 'hma', 'Hma1.2p1_0592F.1_g185510' => 'hma', 'Hma1.2p1_0592F.1_g185520' => 'hma', 'Hma1.2p1_0592F.1_g185530' => 'hma', 'Hma1.2p1_0818F.1_g223450' => 'hma', 'HPP92_009708' => 'vpl', 'HPP92_009793' => 'vpl', 'HPP92_009796' => 'vpl', 'HPP92_009797' => 'vpl', 'HPP92_014940' => 'vpl', 'HPP92_014988' => 'vpl', 'Hund02463' => 'sun', 'Hund02760' => 'sun', 'Hund05071' => 'sun', 'Hund10108' => 'sun', 'Hund11204' => 'sun', 'Hund14016' => 'sun', 'Hund16464' => 'sun', 'Lalb_Chr09g0333391' => 'lal', 'Lalb_Chr11g0070461' => 'lal', 'Lalb_Chr12g0201671' => 'lal', 'Lalb_Chr13g0297161' => 'lal', 'Lj1g0002823' => 'lja', 'Lj3C1074T6' => 'lonja', 'Lj4A212T28' => 'lonja', 'Lj4g0005516' => 'lja', 'Lj4g0013705' => 'lja', 'Lj4g0027865' => 'lja', 'Lj5C92G16' => 'lonja', 'Lj5C92T12' => 'lonja', 'Lj7C596T3' => 'lonja', 'Lj9A446G59' => 'lonja', 'Lj9A482G21' => 'lonja', 'Lsat_1_v5_gn_1_28261' => 'lsa', 'Lsat_1_v5_gn_1_28281' => 'lsa', 'Lsat_1_v5_gn_1_32721' => 'lsa', 'Lsat_1_v5_gn_4_151760' => 'lsa', 'Lsat_1_v5_gn_4_2120' => 'lsa', 'Lsat_1_v5_gn_4_75761' => 'lsa', 'Lsat_1_v5_gn_5_10920' => 'lsa', 'Manes.02G099900' => 'mes', 'Manes.11G096200' => 'mes', 'Manes.12G007200' => 'mes', 'Manes.14G048300' => 'mes', 'Manes.17G114700' => 'mes', 'Mapoly0002s0070' => 'mpo', 'Mapoly0029s0099' => 'mpo', 'MBI07_g24742_MAGBIO' => 'mbi', 'MBI10_g27988_MAGBIO' => 'mbi', 'MBI11_g13057_MAGBIO' => 'mbi', 'MD02G1137200' => 'mdo', 'MD06G1137200' => 'mdo', 'MD07G1122300' => 'mdo', 'MD09G1078200' => 'mdo', 'MD13G1123700' => 'mdo', 'MD14G1151900' => 'mdo', 'MD17G1030900' => 'mdo', 'MD17G1068200' => 'mdo', 'MD17G1068600' => 'mdo', 'Medtr3g077540' => 'mtr', 'Medtr4g105530' => 'mtr', 'Medtr8g076580' => 'mtr', 'Medtr8g076590' => 'mtr', 'Medtr8g096410' => 'mtr', 'MELO3C016411.2' => 'cme', 'MELO3C017780.2' => 'cme', 'MELO3C022560.2' => 'cme', 'MELO3C026187.2' => 'cme', 'MELO3C026286.2' => 'cme', 'MELO3C032854.2' => 'cme', 'Migut.H02495' => 'egut', 'Migut.I00561' => 'egut', 'Migut.K01015' => 'egut', 'Migut.K01016' => 'egut', 'Migut.L00743' => 'egut', 'Migut.L00744' => 'egut', 'Migut.L00746' => 'egut', 'Migut.L00798' => 'egut', 'Migut.L00799' => 'egut', 'Migut.N02096' => 'egut', 'MSTRG.11259' => 'ama', 'MSTRG.23142' => 'ama', 'MSTRG.2499' => 'ama', 'Nitab4.5_0000003g0730' => 'nta', 'Nitab4.5_0000137g0020' => 'nta', 'Nitab4.5_0000721g0210' => 'nta', 'Nitab4.5_0000723g0050' => 'nta', 'Nitab4.5_0000913g0070' => 'nta', 'Nitab4.5_0001332g0040' => 'nta', 'Nitab4.5_0001771g0050' => 'nta', 'Nitab4.5_0001918g0050' => 'nta', 'Nitab4.5_0002686g0030' => 'nta', 'Nitab4.5_0003156g0020' => 'nta', 'Nitab4.5_0003383g0040' => 'nta', 'Nitab4.5_0003918g0010' => 'nta', 'Nitab4.5_0006760g0010' => 'nta', 'Nn1g05981' => 'nnu', 'Nn1g06288' => 'nnu', 'Nn3g16371' => 'nnu', 'Nn3g16786' => 'nnu', 'Nn4g22232' => 'nnu', 'Oeu005144.1' => 'oeu', 'Oeu005145.1' => 'oeu', 'Oeu011348.1' => 'oeu', 'Oeu016415.1' => 'oeu', 'Oeu023501.1' => 'oeu', 'Oeu044473.1' => 'oeu', 'Oeu048892.2' => 'oeu', 'Os01g0549200' => 'osa', 'Os02g0469300' => 'osa', 'Os04g0311100' => 'osa', 'Os06g0474900' => 'osa', 'Os10g0181700' => 'osa', 'Os11g0454800' => 'osa', 'Peaxi162Scf00037g00714' => 'pax', 'Peaxi162Scf00084g01217' => 'pax', 'Peaxi162Scf00257g00217' => 'pax', 'Peaxi162Scf00516g00215' => 'pax', 'Peaxi162Scf00689g00123' => 'pax', 'PGR044G2719' => 'pgr', 'PGR083G1360' => 'pgr', 'PGR102G2849' => 'pgr', 'PGR119G2534' => 'pgr', 'PGSC0003DMG400003538' => 'stu', 'PGSC0003DMG400028138' => 'stu', 'PGSC0003DMG400031732' => 'stu', 'PGSC0003DMG400038165' => 'stu', 'Phvul.002G284600' => 'pvu', 'Phvul.003G258200' => 'pvu', 'Phvul.009G176500' => 'pvu', 'Potri.003G167201' => 'ptr', 'Potri.005G118400' => 'ptr', 'Potri.012G089000' => 'ptr', 'Potri.012G102800' => 'ptr', 'Potri.015G079400' => 'ptr', 'Potri.015G100900' => 'ptr', 'Pp3c14_9810' => 'ppa', 'Pp3c15_10450' => 'ppa', 'Pp3c20_19150' => 'ppa', 'Pp3c23_12740' => 'ppa', 'Pp3c23_6310' => 'ppa', 'Pp3c24_3720' => 'ppa', 'Pp3c27_2580' => 'ppa', 'Pp3c9_8990' => 'ppa', 'PRCOL_00002854' => 'pco', 'Prupe.1G221200' => 'ppe', 'Prupe.3G289000' => 'ppe', 'Prupe.5G147000' => 'ppe', 'Prupe.6G157300' => 'ppe', 'Prupe.7G163400' => 'ppe', 'Psat0s2177g0040' => 'psa', 'Psat3g174760' => 'psa', 'Psat3g192160' => 'psa', 'Psat4g058520' => 'psa', 'Psat4g096840' => 'psa', 'Psat7g037320' => 'psa', 'PSO017G1274' => 'pso', 'PSO017G5166' => 'pso', 'PSO063G4558' => 'pso', 'PSO170G4458' => 'pso', 'PSO170G5005' => 'pso', 'PSO210G6156' => 'pso', 'PSO210G6635' => 'pso', 'PSO210G7397' => 'pso', 'PSO210G7700' => 'pso', 'PSO455G0035' => 'pso', 'PSO455G0180' => 'pso', 'PSO478G4515' => 'pso', 'PSO832G1305' => 'pso', 'PSO832G3489' => 'pso', 'QL02p075247' => 'qlo', 'QL03p051148' => 'qlo', 'QL05p010313' => 'qlo', 'QL06p034627' => 'qlo', 'QL10p001889' => 'qlo', 'QL10p010846' => 'qlo', 'RcHm_v2.0_Chr1g0350621' => 'rch', 'RcHm_v2.0_Chr1g0350641' => 'rch', 'RcHm_v2.0_Chr2g0092891' => 'rch', 'RcHm_v2.0_Chr2g0100251' => 'rch', 'RcHm_v2.0_Chr2g0158661' => 'rch', 'RcHm_v2.0_Chr2g0172741' => 'rch', 'RcHm_v2.0_Chr4g0429571' => 'rch', 'RcHm_v2.0_Chr5g0042471' => 'rch', 'RcHm_v2.0_Chr7g0189451' => 'rch', 'Rhsim08G0052000' => 'rsi', 'Rhsim08G0174400' => 'rsi', 'Rhsim08G0193200' => 'rsi', 'Rhsim10G0214800' => 'rsi', 'Rhsim10G0214900' => 'rsi', 'Rhsim10G0215000' => 'rsi', 'Rhsim12G0022900' => 'rsi', 'Rhsim12G0177500' => 'rsi', 'Rhsim12G0177700' => 'rsi', 'Sabra03G0122600' => 'sbr', 'Sabra05G0097400' => 'sbr', 'Sabra12G0064100' => 'sbr', 'Sabra15G0121300' => 'sbr', 'SalBow2G0642' => 'sbo', 'SalBow5G2667' => 'sbo', 'SalBow5G4873' => 'sbo', 'SalBow8G2395' => 'sbo', 'Sc03g0003290' => 'sci', 'Sc10g0010130' => 'sci', 'Sc22g0003650' => 'sci', 'Sed0001603' => 'sed', 'Sed0004259' => 'sed', 'Sed0006789' => 'sed', 'Sed0011838' => 'sed', 'Sed0012964' => 'sed', 'Sed0016383' => 'sed', 'Sed0019010' => 'sed', 'Sed0020188' => 'sed', 'SEGI_04702' => 'sgi', 'SEGI_17231' => 'sgi', 'SEGI_18877' => 'sgi', 'SEGI_25196' => 'sgi', 'SEGI_25515' => 'sgi', 'SEGI_28445' => 'sgi', 'SEGI_37452' => 'sgi', 'SGA_v2.0_scaffold188G40336' => 'sas', 'SGA_v2.0_scaffold228G43247' => 'sas', 'SGA_v2.0_scaffold280G46853' => 'sas', 'SGA_v2.0_scaffold34G13808' => 'sas', 'SGA_v2.0_scaffold40G15576' => 'sas', 'SGA_v2.0_scaffold611G53188' => 'sas', 'SGA_v2.0_scaffold78G25461' => 'sas', 'SGA_v2.0_scaffold90G27888' => 'sas', 'SHI08601' => 'shi', 'SHI08606' => 'shi', 'SHI17117' => 'shi', 'SHI17119' => 'shi', 'SMO118G0201' => 'smo', 'SMO169G0247' => 'smo', 'SMO176G0006' => 'smo', 'SMO176G0015' => 'smo', 'SMO202G0006' => 'smo', 'SMO240G0050' => 'smo', 'SMO286G0009' => 'smo', 'SMO338G0033' => 'smo', 'SMO356G0533' => 'smo', 'SMO364G0382' => 'smo', 'SMO367G0166' => 'smo', 'SMO367G1098' => 'smo', 'Solyc01g009920.3' => 'sly', 'Solyc01g099300.3' => 'sly', 'Solyc02g084700.3' => 'sly', 'Solyc03g097520.3' => 'sly', 'Solyc06g071580.3' => 'sly', 'Solyc10g081760.3' => 'sly', 'Sopen01g005480' => 'spe', 'Sopen01g042850' => 'spe', 'Sopen02g029370' => 'spe', 'Sopen03g028280' => 'spe', 'Sopen06g027870' => 'spe', 'Sopen10g032270' => 'spe', 'Sp5g18180' => 'spa', 'Sp6g12880' => 'spa', 'Sp6g30850' => 'spa', 'Sp7g22960' => 'spa', 'Sp7g34010' => 'spa', 'SpUn1326_0010' => 'spa', 'TAR371G0242' => 'tar', 'TAR622G0638' => 'tar', 'TAR628G1548' => 'tar', 'TAR629G1079' => 'tar', 'TAR629G3413' => 'tar', 'THA.LOC104804249' => 'tha', 'THA.LOC104808315' => 'tha', 'THA.LOC104809238' => 'tha', 'THA.LOC104825484' => 'tha', 'Thecc.01G025500' => 'tca', 'Thecc.03G015800' => 'tca', 'Thecc.03G018000' => 'tca', 'Thecc.03G134800' => 'tca', 'Thecc.04G014700' => 'tca', 'Thhalv10006991m.g' => 'esa', 'Thhalv10012707m.g' => 'esa', 'Thhalv10015739m.g' => 'esa', 'Thhalv10024553m.g' => 'esa', 'Thhalv10024673m.g' => 'esa', 'Thhalv10029187m.g' => 'esa', 'TPR.G12971' => 'tpr', 'TPR.G29396' => 'tpr', 'TPR.G33376' => 'tpr', 'TPR.G35508' => 'tpr', 'TPR.G35516' => 'tpr', 'TPR.G37317' => 'tpr', 'TPR.G37389' => 'tpr', 'TPR.G37523' => 'tpr', 'TPR.G559' => 'tpr', 'TWI14G0070' => 'twi', 'TWI14G0729' => 'twi', 'TWI18G0596' => 'twi', 'TWI39G0780' => 'twi', 'TWI39G0850' => 'twi', 'TWI73G1052' => 'twi', 'unitig_52.g17485' => 'ugi', 'unitig_61.g26355' => 'ugi', 'vmacro01040' => 'vma', 'vmacro16731' => 'vma', 'vmacro18270' => 'vma', 'vmacro19142' => 'vma', 'vmacro19407' => 'vma', 'vmacro19408' => 'vma', 'vmacro21899' => 'vma', 'vmacro21900' => 'vma', 'vmacro21901' => 'vma', 'VMungo0251G0490' => 'vmu', 'VMungo0251G1748' => 'vmu', 'VMungo1309G0421' => 'vmu', 'Zm00001eb086500' => 'zma', 'Zm00001eb150680' => 'zma', 'Zm00001eb162330' => 'zma', 'Zm00001eb203130' => 'zma', 'Zm00001eb369480' => 'zma', 'Zm00001eb382340' => 'zma', 'Zm00001eb416360' => 'zma' ) $gf_id = 'HOM05D000902' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000902' ) $data_identifier = 'HOM05D000902' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 13, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 10, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 6, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 9, 'hma' => (int) 12, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 4, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 6, 'ppa' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 6, 'rch' => (int) 9, 'rsi' => (int) 9, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 12, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 3, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416360' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000902', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '663', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02470' => 'bna', 'A01p16260' => 'bna', 'A02p01680' => 'bna', 'A03p16600' => 'bna', 'A03p55660' => 'bna', 'A03p64160' => 'bna', 'A03p64170' => 'bna', 'A08p31900' => 'bna', 'A09p59530' => 'bna', 'A10p08230' => 'bna', 'A10p25090' => 'bna', 'Aa31LG3G7100' => 'aar', 'Aa31LG3G7110' => 'aar', 'Aa31LG6G13160' => 'aar', 'Aa31LG7G10770' => 'aar', 'Aa31LG7G3830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2723' => 'aag', 'Actinidia08045' => 'ach', 'Actinidia08888' => 'ach', 'Actinidia18333' => 'ach', 'Actinidia19334' => 'ach', 'Actinidia25552' => 'ach', 'Actinidia26089' => 'ach', 'Actinidia30615' => 'ach', 'Actinidia30616' => 'ach', 'Actinidia33083' => 'ach', 'Actinidia35762' => 'ach', 'Ah.02g110620' => 'amhyb', 'Ah.11g046390' => 'amhyb', 'AL1G31670' => 'aly', 'AL6G23730' => 'aly', 'AL7G14740' => 'aly', 'AL7G14750' => 'aly', 'AL7G14760' => 'aly', 'AL7G28220' => 'aly', 'AL8G24940' => 'aly', 'Aqoxy3G01665' => 'aox', 'Aqoxy3G02853' => 'aox', 'Aqoxy5G01513' => 'aox', 'Aqoxy5G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8SKA4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ75LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKDA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0LJZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7REX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZP4YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWX7I5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2QKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS0L9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPCD8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q161UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC7XCF' => 'arhy', 'AT1G19100' => 'ath', 'AT4G24970' => 'ath', 'AT4G36270' => 'ath', 'AT4G36280' => 'ath', 'AT4G36290' => 'ath', 'AT5G13130' => 'ath', 'AT5G50780' => 'ath', 'ATR0582G266' => 'atr', 'ATR0661G195' => 'atr', 'ATR1152G031' => 'atr', 'Atru.chr11.2382' => 'acertr', 'Atru.chr12.2337' => 'acertr', 'Atru.chr3.744' => 'acertr', 'Atru.chr6.1870' => 'acertr', 'Atru.chr9.2515' => 'acertr', 'AUR62004120' => 'cqu', 'AUR62005667' => 'cqu', 'AUR62007634' => 'cqu', 'AUR62008186' => 'cqu', 'AUR62008187' => 'cqu', 'AUR62008188' => 'cqu', 'AUR62027954' => 'cqu', 'AUR62028766' => 'cqu', 'AUR62028767' => 'cqu', 'AUR62028768' => 'cqu', 'AUR62028886' => 'cqu', 'AUR62029563' => 'cqu', 'AUR62038832' => 'cqu', 'BcaB01g04149' => 'bca', 'BcaB03g12940' => 'bca', 'BcaB03g13090' => 'bca', 'BcaB03g14466' => 'bca', 'BcaB05g24035' => 'bca', 'BcaC01g06050' => 'bca', 'BcaC04g19148' => 'bca', 'BcaC04g20761' => 'bca', 'BcaC06g32845' => 'bca', 'BcaC07g41274' => 'bca', 'BcaC09g50827' => 'bca', 'BcaNung00741' => 'bca', 'BcaNung00742' => 'bca', 'BcaNung01859' => 'bca', 'BcaNung03985' => 'bca', 'BcaNung03989' => 'bca', 'BcaNung05661' => 'bca', 'BolC1t00257H' => 'bol', 'BolC1t01956H' => 'bol', 'BolC2t06534H' => 'bol', 'BolC3t14334H' => 'bol', 'BolC5t30451H' => 'bol', 'BolC7t45880H' => 'bol', 'BolC7t46586H' => 'bol', 'BolC8t49301H' => 'bol', 'BolC8t51837H' => 'bol', 'BolC9t56822H' => 'bol', 'BolC9t59235H' => 'bol', 'BraA01t00234Z' => 'bra', 'BraA01t01563Z' => 'bra', 'BraA02t05147Z' => 'bra', 'BraA03t10947Z' => 'bra', 'BraA03t14633Z' => 'bra', 'BraA08t35112Z' => 'bra', 'BraA09t41330Z' => 'bra', 'BraA10t44570Z' => 'bra', 'C01p02670' => 'bna', 'C01p20260' => 'bna', 'C02p05890' => 'bna', 'C03p19530' => 'bna', 'C05p17470' => 'bna', 'C07p53900' => 'bna', 'C07p61630' => 'bna', 'C08p16800' => 'bna', 'C08p42810' => 'bna', 'C09p39480' => 'bna', 'C09p63980' => 'bna', 'CAN.G1001.7' => 'can', 'CAN.G1034.55' => 'can', 'CAN.G143.7' => 'can', 'CAN.G3340.1' => 'can', 'CAN.G358.19' => 'can', 'CAN.G373.2' => 'can', 'CAN.G674.16' => 'can', 'CAN.G674.17' => 'can', 'CAN.G674.18' => 'can', 'CAN.G732.2' => 'can', 'CAN.G732.3' => 'can', 'CAN.G993.39' => 'can', 'CANSAT01G2052' => 'cansat', 'CANSAT80G0070' => 'cansat', 'CANSAT80G0483' => 'cansat', 'CANSAT80G0625' => 'cansat', 'CARHR019690' => 'chi', 'CARHR080280' => 'chi', 'CARHR152750' => 'chi', 'CARHR152760' => 'chi', 'CARHR152770' => 'chi', 'CARHR200340' => 'chi', 'CARHR232370' => 'chi', 'CARHR244670' => 'chi', 'CARHR244680' => 'chi', 'CARHR257520' => 'chi', 'Carub.0001s1872' => 'cru', 'Carub.0006s1130' => 'cru', 'Carub.0007s0396' => 'cru', 'Carub.0007s0397' => 'cru', 'Carub.0007s1608' => 'cru', 'Carub.0008s1068' => 'cru', 'Carub.0008s1077' => 'cru', 'Ca_16158_v3' => 'car', 'Ca_17571_v3' => 'car', 'Ca_21936_v3' => 'car', 'Ca_22350_v3' => 'car', 'CBR_g22445' => 'cbr', 'CBR_g26290' => 'cbr', 'Cc04_g09610' => 'ccan', 'Cc04_g12280' => 'ccan', 'Cc07_g10230' => 'ccan', 'CDE02G0093' => 'cde', 'CDE02G0701' => 'cde', 'CDE04G1050' => 'cde', 'CDE05G1833' => 'cde', 'CDE05G3058' => 'cde', 'CDE05G3380' => 'cde', 'CDE06G0536' => 'cde', 'Cfa006923' => 'cfa', 'Cfa009402' => 'cfa', 'Cfa018751' => 'cfa', 'Cfa019164' => 'cfa', 'Cfa022935' => 'cfa', 'Ciclev10019081m.g' => 'ccl', 'Ciclev10025076m.g' => 'ccl', 'Ciclev10030712m.g' => 'ccl', 'Ciclev10033760m.g' => 'ccl', 'CiPaw.05G105600' => 'cil', 'CiPaw.08G136700' => 'cil', 'CiPaw.11G003900' => 'cil', 'CiPaw.11G023700' => 'cil', 'CiPaw.12G003700' => 'cil', 'ClCG06G017100' => 'cla', 'ClCG06G018110' => 'cla', 'ClCG07G008800' => 'cla', 'ClCG07G015330' => 'cla', 'COL.COLO4_13698' => 'col', 'COL.COLO4_16659' => 'col', 'COL.COLO4_21986' => 'col', 'COL.COLO4_24049' => 'col', 'COL.COLO4_29061' => 'col', 'COL.COLO4_29075' => 'col', 'COL.COLO4_30094' => 'col', 'Cpa.g.c33689' => 'cpa', 'Cpa.g.sc108.39' => 'cpa', 'Cpa.g.sc108.41' => 'cpa', 'Cpa.g.sc1163.1' => 'cpa', 'Cpa.g.sc4.155' => 'cpa', 'Cpa.g.sc6.194' => 'cpa', 'CsaV3_1G000340' => 'csa', 'CsaV3_1G001400' => 'csa', 'CsaV3_4G002220' => 'csa', 'CsaV3_4G005370' => 'csa', 'CSS0007487' => 'camsi', 'CSS0008066' => 'camsi', 'CSS0009120' => 'camsi', 'CSS0015512' => 'camsi', 'CSS0022409' => 'camsi', 'CSS0025358' => 'camsi', 'CSS0044547' => 'camsi', 'DCAR_013057' => 'dca', 'DCAR_015058' => 'dca', 'DCAR_016027' => 'dca', 'DCAR_017327' => 'dca', 'DCAR_020743' => 'dca', 'DCAR_026157' => 'dca', 'DCAR_032339' => 'dca', 'DCAR_032340' => 'dca', 'Dinv11200' => 'din', 'Dinv11201' => 'din', 'Dinv20631' => 'din', 'Dinv23182' => 'din', 'Dinv33466' => 'din', 'Dinv33583' => 'din', 'Dinv38565' => 'din', 'Duzib068G0200' => 'dzi', 'Duzib147G0132' => 'dzi', 'Duzib147G0635' => 'dzi', 'Duzib205G1670' => 'dzi', 'Duzib251G0606' => 'dzi', 'ECA232G3336' => 'eca', 'ECA232G3763' => 'eca', 'ECA232G4845' => 'eca', 'ECA234G1607' => 'eca', 'ECA246G0932' => 'eca', 'ECA247G0781' => 'eca', 'ECA247G1932' => 'eca', 'ECA247G2079' => 'eca', 'ECA247G3338' => 'eca', 'ECA247G4115' => 'eca', 'EL10Ac3g06552' => 'bvu', 'EL10Ac5g10721' => 'bvu', 'EL10Ac5g10722' => 'bvu', 'EL10Ac5g10723' => 'bvu', 'EL10Ac5g11361' => 'bvu', 'EL10Ac6g13553' => 'bvu', 'EL10As8g23872' => 'bvu', 'Eucgr.B00250' => 'egr', 'Eucgr.B00251' => 'egr', 'Eucgr.B03533' => 'egr', 'Eucgr.I02381' => 'egr', 'Eucgr.K02700' => 'egr', 'FAN02G0174' => 'fan', 'FAN02G3146' => 'fan', 'FAN04G1672' => 'fan', 'FAN04G2273' => 'fan', 'FAN05G2791' => 'fan', 'FAN05G4035' => 'fan', 'FAN07G0834' => 'fan', 'FAN08G1198' => 'fan', 'FAN09G4182' => 'fan', 'FAN12G0496' => 'fan', 'FAN13G1027' => 'fan', 'FAN13G2951' => 'fan', 'FAN14G0705' => 'fan', 'FAN14G0720' => 'fan', 'FAN17G0201' => 'fan', 'FAN17G2665' => 'fan', 'FAN18G1456' => 'fan', 'FAN18G1525' => 'fan', 'FAN18G3500' => 'fan', 'FAN28G2670' => 'fan', 'FvH4_1g12391' => 'fve', 'FvH4_4g23220' => 'fve', 'FvH4_5g08810' => 'fve', 'FvH4_5g28960' => 'fve', 'FvH4_6g42820' => 'fve', 'FvH4_6g51110' => 'fve', 'Glyma.02G051802' => 'gma', 'Glyma.04G185300' => 'gma', 'Glyma.05G202900' => 'gma', 'Glyma.08G010300' => 'gma', 'Glyma.16G131900' => 'gma', 'Glyma.17G087900' => 'gma', 'Gohir.A07G048600' => 'ghi', 'Gohir.A11G179000' => 'ghi', 'Gohir.A12G140900' => 'ghi', 'Gohir.A12G140950' => 'ghi', 'Gohir.A12G191700' => 'ghi', 'Gohir.A13G086300' => 'ghi', 'Gohir.D07G052900' => 'ghi', 'Gohir.D11G186600' => 'ghi', 'Gohir.D12G145575' => 'ghi', 'Gohir.D12G145650' => 'ghi', 'Gohir.D12G145725' => 'ghi', 'Gohir.D12G194050' => 'ghi', 'Gohir.D13G091800' => 'ghi', 'Gorai.001G055900' => 'gra', 'Gorai.007G198400' => 'gra', 'Gorai.008G157000' => 'gra', 'Gorai.008G157100' => 'gra', 'Gorai.008G208700' => 'gra', 'Gorai.010G138700' => 'gra', 'GSVIVG01000977001' => 'vvi', 'GSVIVG01007708001' => 'vvi', 'GSVIVG01008587001' => 'vvi', 'GSVIVG01018849001' => 'vvi', 'GSVIVG01032432001' => 'vvi', 'HanXRQChr02g0034131' => 'han', 'HanXRQChr02g0035981' => 'han', 'HanXRQChr02g0035991' => 'han', 'HanXRQChr05g0155611' => 'han', 'HanXRQChr05g0155621' => 'han', 'HanXRQChr08g0236501' => 'han', 'HanXRQChr09g0261321' => 'han', 'HanXRQChr09g0272081' => 'han', 'HanXRQChr10g0310741' => 'han', 'HanXRQChr11g0325591' => 'han', 'HanXRQChr12g0385691' => 'han', 'HanXRQChr13g0387801' => 'han', 'HanXRQChr15g0463011' => 'han', 'Haze_03826' => 'cav', 'Haze_03827' => 'cav', 'Haze_07183' => 'cav', 'Haze_07537' => 'cav', 'Haze_07539' => 'cav', 'Haze_12461' => 'cav', 'Haze_16115' => 'cav', 'Haze_16808' => 'cav', 'Haze_18531' => 'cav', 'Hma1.2p1_0046F.1_g026700' => 'hma', 'Hma1.2p1_0046F.1_g026710' => 'hma', 'Hma1.2p1_0168F.1_g074340' => 'hma', 'Hma1.2p1_0266F.1_g107030' => 'hma', 'Hma1.2p1_0266F.1_g107060' => 'hma', 'Hma1.2p1_0275F.1_g110510' => 'hma', 'Hma1.2p1_0592F.1_g185490' => 'hma', 'Hma1.2p1_0592F.1_g185500' => 'hma', 'Hma1.2p1_0592F.1_g185510' => 'hma', 'Hma1.2p1_0592F.1_g185520' => 'hma', 'Hma1.2p1_0592F.1_g185530' => 'hma', 'Hma1.2p1_0818F.1_g223450' => 'hma', 'HPP92_009708' => 'vpl', 'HPP92_009793' => 'vpl', 'HPP92_009796' => 'vpl', 'HPP92_009797' => 'vpl', 'HPP92_014940' => 'vpl', 'HPP92_014988' => 'vpl', 'Hund02463' => 'sun', 'Hund02760' => 'sun', 'Hund05071' => 'sun', 'Hund10108' => 'sun', 'Hund11204' => 'sun', 'Hund14016' => 'sun', 'Hund16464' => 'sun', 'Lalb_Chr09g0333391' => 'lal', 'Lalb_Chr11g0070461' => 'lal', 'Lalb_Chr12g0201671' => 'lal', 'Lalb_Chr13g0297161' => 'lal', 'Lj1g0002823' => 'lja', 'Lj3C1074T6' => 'lonja', 'Lj4A212T28' => 'lonja', 'Lj4g0005516' => 'lja', 'Lj4g0013705' => 'lja', 'Lj4g0027865' => 'lja', 'Lj5C92G16' => 'lonja', 'Lj5C92T12' => 'lonja', 'Lj7C596T3' => 'lonja', 'Lj9A446G59' => 'lonja', 'Lj9A482G21' => 'lonja', 'Lsat_1_v5_gn_1_28261' => 'lsa', 'Lsat_1_v5_gn_1_28281' => 'lsa', 'Lsat_1_v5_gn_1_32721' => 'lsa', 'Lsat_1_v5_gn_4_151760' => 'lsa', 'Lsat_1_v5_gn_4_2120' => 'lsa', 'Lsat_1_v5_gn_4_75761' => 'lsa', 'Lsat_1_v5_gn_5_10920' => 'lsa', 'Manes.02G099900' => 'mes', 'Manes.11G096200' => 'mes', 'Manes.12G007200' => 'mes', 'Manes.14G048300' => 'mes', 'Manes.17G114700' => 'mes', 'Mapoly0002s0070' => 'mpo', 'Mapoly0029s0099' => 'mpo', 'MBI07_g24742_MAGBIO' => 'mbi', 'MBI10_g27988_MAGBIO' => 'mbi', 'MBI11_g13057_MAGBIO' => 'mbi', 'MD02G1137200' => 'mdo', 'MD06G1137200' => 'mdo', 'MD07G1122300' => 'mdo', 'MD09G1078200' => 'mdo', 'MD13G1123700' => 'mdo', 'MD14G1151900' => 'mdo', 'MD17G1030900' => 'mdo', 'MD17G1068200' => 'mdo', 'MD17G1068600' => 'mdo', 'Medtr3g077540' => 'mtr', 'Medtr4g105530' => 'mtr', 'Medtr8g076580' => 'mtr', 'Medtr8g076590' => 'mtr', 'Medtr8g096410' => 'mtr', 'MELO3C016411.2' => 'cme', 'MELO3C017780.2' => 'cme', 'MELO3C022560.2' => 'cme', 'MELO3C026187.2' => 'cme', 'MELO3C026286.2' => 'cme', 'MELO3C032854.2' => 'cme', 'Migut.H02495' => 'egut', 'Migut.I00561' => 'egut', 'Migut.K01015' => 'egut', 'Migut.K01016' => 'egut', 'Migut.L00743' => 'egut', 'Migut.L00744' => 'egut', 'Migut.L00746' => 'egut', 'Migut.L00798' => 'egut', 'Migut.L00799' => 'egut', 'Migut.N02096' => 'egut', 'MSTRG.11259' => 'ama', 'MSTRG.23142' => 'ama', 'MSTRG.2499' => 'ama', 'Nitab4.5_0000003g0730' => 'nta', 'Nitab4.5_0000137g0020' => 'nta', 'Nitab4.5_0000721g0210' => 'nta', 'Nitab4.5_0000723g0050' => 'nta', 'Nitab4.5_0000913g0070' => 'nta', 'Nitab4.5_0001332g0040' => 'nta', 'Nitab4.5_0001771g0050' => 'nta', 'Nitab4.5_0001918g0050' => 'nta', 'Nitab4.5_0002686g0030' => 'nta', 'Nitab4.5_0003156g0020' => 'nta', 'Nitab4.5_0003383g0040' => 'nta', 'Nitab4.5_0003918g0010' => 'nta', 'Nitab4.5_0006760g0010' => 'nta', 'Nn1g05981' => 'nnu', 'Nn1g06288' => 'nnu', 'Nn3g16371' => 'nnu', 'Nn3g16786' => 'nnu', 'Nn4g22232' => 'nnu', 'Oeu005144.1' => 'oeu', 'Oeu005145.1' => 'oeu', 'Oeu011348.1' => 'oeu', 'Oeu016415.1' => 'oeu', 'Oeu023501.1' => 'oeu', 'Oeu044473.1' => 'oeu', 'Oeu048892.2' => 'oeu', 'Os01g0549200' => 'osa', 'Os02g0469300' => 'osa', 'Os04g0311100' => 'osa', 'Os06g0474900' => 'osa', 'Os10g0181700' => 'osa', 'Os11g0454800' => 'osa', 'Peaxi162Scf00037g00714' => 'pax', 'Peaxi162Scf00084g01217' => 'pax', 'Peaxi162Scf00257g00217' => 'pax', 'Peaxi162Scf00516g00215' => 'pax', 'Peaxi162Scf00689g00123' => 'pax', 'PGR044G2719' => 'pgr', 'PGR083G1360' => 'pgr', 'PGR102G2849' => 'pgr', 'PGR119G2534' => 'pgr', 'PGSC0003DMG400003538' => 'stu', 'PGSC0003DMG400028138' => 'stu', 'PGSC0003DMG400031732' => 'stu', 'PGSC0003DMG400038165' => 'stu', 'Phvul.002G284600' => 'pvu', 'Phvul.003G258200' => 'pvu', 'Phvul.009G176500' => 'pvu', 'Potri.003G167201' => 'ptr', 'Potri.005G118400' => 'ptr', 'Potri.012G089000' => 'ptr', 'Potri.012G102800' => 'ptr', 'Potri.015G079400' => 'ptr', 'Potri.015G100900' => 'ptr', 'Pp3c14_9810' => 'ppa', 'Pp3c15_10450' => 'ppa', 'Pp3c20_19150' => 'ppa', 'Pp3c23_12740' => 'ppa', 'Pp3c23_6310' => 'ppa', 'Pp3c24_3720' => 'ppa', 'Pp3c27_2580' => 'ppa', 'Pp3c9_8990' => 'ppa', 'PRCOL_00002854' => 'pco', 'Prupe.1G221200' => 'ppe', 'Prupe.3G289000' => 'ppe', 'Prupe.5G147000' => 'ppe', 'Prupe.6G157300' => 'ppe', 'Prupe.7G163400' => 'ppe', 'Psat0s2177g0040' => 'psa', 'Psat3g174760' => 'psa', 'Psat3g192160' => 'psa', 'Psat4g058520' => 'psa', 'Psat4g096840' => 'psa', 'Psat7g037320' => 'psa', 'PSO017G1274' => 'pso', 'PSO017G5166' => 'pso', 'PSO063G4558' => 'pso', 'PSO170G4458' => 'pso', 'PSO170G5005' => 'pso', 'PSO210G6156' => 'pso', 'PSO210G6635' => 'pso', 'PSO210G7397' => 'pso', 'PSO210G7700' => 'pso', 'PSO455G0035' => 'pso', 'PSO455G0180' => 'pso', 'PSO478G4515' => 'pso', 'PSO832G1305' => 'pso', 'PSO832G3489' => 'pso', 'QL02p075247' => 'qlo', 'QL03p051148' => 'qlo', 'QL05p010313' => 'qlo', 'QL06p034627' => 'qlo', 'QL10p001889' => 'qlo', 'QL10p010846' => 'qlo', 'RcHm_v2.0_Chr1g0350621' => 'rch', 'RcHm_v2.0_Chr1g0350641' => 'rch', 'RcHm_v2.0_Chr2g0092891' => 'rch', 'RcHm_v2.0_Chr2g0100251' => 'rch', 'RcHm_v2.0_Chr2g0158661' => 'rch', 'RcHm_v2.0_Chr2g0172741' => 'rch', 'RcHm_v2.0_Chr4g0429571' => 'rch', 'RcHm_v2.0_Chr5g0042471' => 'rch', 'RcHm_v2.0_Chr7g0189451' => 'rch', 'Rhsim08G0052000' => 'rsi', 'Rhsim08G0174400' => 'rsi', 'Rhsim08G0193200' => 'rsi', 'Rhsim10G0214800' => 'rsi', 'Rhsim10G0214900' => 'rsi', 'Rhsim10G0215000' => 'rsi', 'Rhsim12G0022900' => 'rsi', 'Rhsim12G0177500' => 'rsi', 'Rhsim12G0177700' => 'rsi', 'Sabra03G0122600' => 'sbr', 'Sabra05G0097400' => 'sbr', 'Sabra12G0064100' => 'sbr', 'Sabra15G0121300' => 'sbr', 'SalBow2G0642' => 'sbo', 'SalBow5G2667' => 'sbo', 'SalBow5G4873' => 'sbo', 'SalBow8G2395' => 'sbo', 'Sc03g0003290' => 'sci', 'Sc10g0010130' => 'sci', 'Sc22g0003650' => 'sci', 'Sed0001603' => 'sed', 'Sed0004259' => 'sed', 'Sed0006789' => 'sed', 'Sed0011838' => 'sed', 'Sed0012964' => 'sed', 'Sed0016383' => 'sed', 'Sed0019010' => 'sed', 'Sed0020188' => 'sed', 'SEGI_04702' => 'sgi', 'SEGI_17231' => 'sgi', 'SEGI_18877' => 'sgi', 'SEGI_25196' => 'sgi', 'SEGI_25515' => 'sgi', 'SEGI_28445' => 'sgi', 'SEGI_37452' => 'sgi', 'SGA_v2.0_scaffold188G40336' => 'sas', 'SGA_v2.0_scaffold228G43247' => 'sas', 'SGA_v2.0_scaffold280G46853' => 'sas', 'SGA_v2.0_scaffold34G13808' => 'sas', 'SGA_v2.0_scaffold40G15576' => 'sas', 'SGA_v2.0_scaffold611G53188' => 'sas', 'SGA_v2.0_scaffold78G25461' => 'sas', 'SGA_v2.0_scaffold90G27888' => 'sas', 'SHI08601' => 'shi', 'SHI08606' => 'shi', 'SHI17117' => 'shi', 'SHI17119' => 'shi', 'SMO118G0201' => 'smo', 'SMO169G0247' => 'smo', 'SMO176G0006' => 'smo', 'SMO176G0015' => 'smo', 'SMO202G0006' => 'smo', 'SMO240G0050' => 'smo', 'SMO286G0009' => 'smo', 'SMO338G0033' => 'smo', 'SMO356G0533' => 'smo', 'SMO364G0382' => 'smo', 'SMO367G0166' => 'smo', 'SMO367G1098' => 'smo', 'Solyc01g009920.3' => 'sly', 'Solyc01g099300.3' => 'sly', 'Solyc02g084700.3' => 'sly', 'Solyc03g097520.3' => 'sly', 'Solyc06g071580.3' => 'sly', 'Solyc10g081760.3' => 'sly', 'Sopen01g005480' => 'spe', 'Sopen01g042850' => 'spe', 'Sopen02g029370' => 'spe', 'Sopen03g028280' => 'spe', 'Sopen06g027870' => 'spe', 'Sopen10g032270' => 'spe', 'Sp5g18180' => 'spa', 'Sp6g12880' => 'spa', 'Sp6g30850' => 'spa', 'Sp7g22960' => 'spa', 'Sp7g34010' => 'spa', 'SpUn1326_0010' => 'spa', 'TAR371G0242' => 'tar', 'TAR622G0638' => 'tar', 'TAR628G1548' => 'tar', 'TAR629G1079' => 'tar', 'TAR629G3413' => 'tar', 'THA.LOC104804249' => 'tha', 'THA.LOC104808315' => 'tha', 'THA.LOC104809238' => 'tha', 'THA.LOC104825484' => 'tha', 'Thecc.01G025500' => 'tca', 'Thecc.03G015800' => 'tca', 'Thecc.03G018000' => 'tca', 'Thecc.03G134800' => 'tca', 'Thecc.04G014700' => 'tca', 'Thhalv10006991m.g' => 'esa', 'Thhalv10012707m.g' => 'esa', 'Thhalv10015739m.g' => 'esa', 'Thhalv10024553m.g' => 'esa', 'Thhalv10024673m.g' => 'esa', 'Thhalv10029187m.g' => 'esa', 'TPR.G12971' => 'tpr', 'TPR.G29396' => 'tpr', 'TPR.G33376' => 'tpr', 'TPR.G35508' => 'tpr', 'TPR.G35516' => 'tpr', 'TPR.G37317' => 'tpr', 'TPR.G37389' => 'tpr', 'TPR.G37523' => 'tpr', 'TPR.G559' => 'tpr', 'TWI14G0070' => 'twi', 'TWI14G0729' => 'twi', 'TWI18G0596' => 'twi', 'TWI39G0780' => 'twi', 'TWI39G0850' => 'twi', 'TWI73G1052' => 'twi', 'unitig_52.g17485' => 'ugi', 'unitig_61.g26355' => 'ugi', 'vmacro01040' => 'vma', 'vmacro16731' => 'vma', 'vmacro18270' => 'vma', 'vmacro19142' => 'vma', 'vmacro19407' => 'vma', 'vmacro19408' => 'vma', 'vmacro21899' => 'vma', 'vmacro21900' => 'vma', 'vmacro21901' => 'vma', 'VMungo0251G0490' => 'vmu', 'VMungo0251G1748' => 'vmu', 'VMungo1309G0421' => 'vmu', 'Zm00001eb086500' => 'zma', 'Zm00001eb150680' => 'zma', 'Zm00001eb162330' => 'zma', 'Zm00001eb203130' => 'zma', 'Zm00001eb369480' => 'zma', 'Zm00001eb382340' => 'zma', 'Zm00001eb416360' => 'zma' ), 'gf_id' => 'HOM05D000902', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000902' ), 'data_identifier' => 'HOM05D000902', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000902', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '663', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02470' => 'bna', 'A01p16260' => 'bna', 'A02p01680' => 'bna', 'A03p16600' => 'bna', 'A03p55660' => 'bna', 'A03p64160' => 'bna', 'A03p64170' => 'bna', 'A08p31900' => 'bna', 'A09p59530' => 'bna', 'A10p08230' => 'bna', 'A10p25090' => 'bna', 'Aa31LG3G7100' => 'aar', 'Aa31LG3G7110' => 'aar', 'Aa31LG6G13160' => 'aar', 'Aa31LG7G10770' => 'aar', 'Aa31LG7G3830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2723' => 'aag', 'Actinidia08045' => 'ach', 'Actinidia08888' => 'ach', 'Actinidia18333' => 'ach', 'Actinidia19334' => 'ach', 'Actinidia25552' => 'ach', 'Actinidia26089' => 'ach', 'Actinidia30615' => 'ach', 'Actinidia30616' => 'ach', 'Actinidia33083' => 'ach', 'Actinidia35762' => 'ach', 'Ah.02g110620' => 'amhyb', 'Ah.11g046390' => 'amhyb', 'AL1G31670' => 'aly', 'AL6G23730' => 'aly', 'AL7G14740' => 'aly', 'AL7G14750' => 'aly', 'AL7G14760' => 'aly', 'AL7G28220' => 'aly', 'AL8G24940' => 'aly', 'Aqoxy3G01665' => 'aox', 'Aqoxy3G02853' => 'aox', 'Aqoxy5G01513' => 'aox', 'Aqoxy5G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8SKA4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ75LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKDA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0LJZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7REX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZP4YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWX7I5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2QKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS0L9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPCD8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q161UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC7XCF' => 'arhy', 'AT1G19100' => 'ath', 'AT4G24970' => 'ath', 'AT4G36270' => 'ath', 'AT4G36280' => 'ath', 'AT4G36290' => 'ath', 'AT5G13130' => 'ath', 'AT5G50780' => 'ath', 'ATR0582G266' => 'atr', 'ATR0661G195' => 'atr', 'ATR1152G031' => 'atr', 'Atru.chr11.2382' => 'acertr', 'Atru.chr12.2337' => 'acertr', 'Atru.chr3.744' => 'acertr', 'Atru.chr6.1870' => 'acertr', 'Atru.chr9.2515' => 'acertr', 'AUR62004120' => 'cqu', 'AUR62005667' => 'cqu', 'AUR62007634' => 'cqu', 'AUR62008186' => 'cqu', 'AUR62008187' => 'cqu', 'AUR62008188' => 'cqu', 'AUR62027954' => 'cqu', 'AUR62028766' => 'cqu', 'AUR62028767' => 'cqu', 'AUR62028768' => 'cqu', 'AUR62028886' => 'cqu', 'AUR62029563' => 'cqu', 'AUR62038832' => 'cqu', 'BcaB01g04149' => 'bca', 'BcaB03g12940' => 'bca', 'BcaB03g13090' => 'bca', 'BcaB03g14466' => 'bca', 'BcaB05g24035' => 'bca', 'BcaC01g06050' => 'bca', 'BcaC04g19148' => 'bca', 'BcaC04g20761' => 'bca', 'BcaC06g32845' => 'bca', 'BcaC07g41274' => 'bca', 'BcaC09g50827' => 'bca', 'BcaNung00741' => 'bca', 'BcaNung00742' => 'bca', 'BcaNung01859' => 'bca', 'BcaNung03985' => 'bca', 'BcaNung03989' => 'bca', 'BcaNung05661' => 'bca', 'BolC1t00257H' => 'bol', 'BolC1t01956H' => 'bol', 'BolC2t06534H' => 'bol', 'BolC3t14334H' => 'bol', 'BolC5t30451H' => 'bol', 'BolC7t45880H' => 'bol', 'BolC7t46586H' => 'bol', 'BolC8t49301H' => 'bol', 'BolC8t51837H' => 'bol', 'BolC9t56822H' => 'bol', 'BolC9t59235H' => 'bol', 'BraA01t00234Z' => 'bra', 'BraA01t01563Z' => 'bra', 'BraA02t05147Z' => 'bra', 'BraA03t10947Z' => 'bra', 'BraA03t14633Z' => 'bra', 'BraA08t35112Z' => 'bra', 'BraA09t41330Z' => 'bra', 'BraA10t44570Z' => 'bra', 'C01p02670' => 'bna', 'C01p20260' => 'bna', 'C02p05890' => 'bna', 'C03p19530' => 'bna', 'C05p17470' => 'bna', 'C07p53900' => 'bna', 'C07p61630' => 'bna', 'C08p16800' => 'bna', 'C08p42810' => 'bna', 'C09p39480' => 'bna', 'C09p63980' => 'bna', 'CAN.G1001.7' => 'can', 'CAN.G1034.55' => 'can', 'CAN.G143.7' => 'can', 'CAN.G3340.1' => 'can', 'CAN.G358.19' => 'can', 'CAN.G373.2' => 'can', 'CAN.G674.16' => 'can', 'CAN.G674.17' => 'can', 'CAN.G674.18' => 'can', 'CAN.G732.2' => 'can', 'CAN.G732.3' => 'can', 'CAN.G993.39' => 'can', 'CANSAT01G2052' => 'cansat', 'CANSAT80G0070' => 'cansat', 'CANSAT80G0483' => 'cansat', 'CANSAT80G0625' => 'cansat', 'CARHR019690' => 'chi', 'CARHR080280' => 'chi', 'CARHR152750' => 'chi', 'CARHR152760' => 'chi', 'CARHR152770' => 'chi', 'CARHR200340' => 'chi', 'CARHR232370' => 'chi', 'CARHR244670' => 'chi', 'CARHR244680' => 'chi', 'CARHR257520' => 'chi', 'Carub.0001s1872' => 'cru', 'Carub.0006s1130' => 'cru', 'Carub.0007s0396' => 'cru', 'Carub.0007s0397' => 'cru', 'Carub.0007s1608' => 'cru', 'Carub.0008s1068' => 'cru', 'Carub.0008s1077' => 'cru', 'Ca_16158_v3' => 'car', 'Ca_17571_v3' => 'car', 'Ca_21936_v3' => 'car', 'Ca_22350_v3' => 'car', 'CBR_g22445' => 'cbr', 'CBR_g26290' => 'cbr', 'Cc04_g09610' => 'ccan', 'Cc04_g12280' => 'ccan', 'Cc07_g10230' => 'ccan', 'CDE02G0093' => 'cde', 'CDE02G0701' => 'cde', 'CDE04G1050' => 'cde', 'CDE05G1833' => 'cde', 'CDE05G3058' => 'cde', 'CDE05G3380' => 'cde', 'CDE06G0536' => 'cde', 'Cfa006923' => 'cfa', 'Cfa009402' => 'cfa', 'Cfa018751' => 'cfa', 'Cfa019164' => 'cfa', 'Cfa022935' => 'cfa', 'Ciclev10019081m.g' => 'ccl', 'Ciclev10025076m.g' => 'ccl', 'Ciclev10030712m.g' => 'ccl', 'Ciclev10033760m.g' => 'ccl', 'CiPaw.05G105600' => 'cil', 'CiPaw.08G136700' => 'cil', 'CiPaw.11G003900' => 'cil', 'CiPaw.11G023700' => 'cil', 'CiPaw.12G003700' => 'cil', 'ClCG06G017100' => 'cla', 'ClCG06G018110' => 'cla', 'ClCG07G008800' => 'cla', 'ClCG07G015330' => 'cla', 'COL.COLO4_13698' => 'col', 'COL.COLO4_16659' => 'col', 'COL.COLO4_21986' => 'col', 'COL.COLO4_24049' => 'col', 'COL.COLO4_29061' => 'col', 'COL.COLO4_29075' => 'col', 'COL.COLO4_30094' => 'col', 'Cpa.g.c33689' => 'cpa', 'Cpa.g.sc108.39' => 'cpa', 'Cpa.g.sc108.41' => 'cpa', 'Cpa.g.sc1163.1' => 'cpa', 'Cpa.g.sc4.155' => 'cpa', 'Cpa.g.sc6.194' => 'cpa', 'CsaV3_1G000340' => 'csa', 'CsaV3_1G001400' => 'csa', 'CsaV3_4G002220' => 'csa', 'CsaV3_4G005370' => 'csa', 'CSS0007487' => 'camsi', 'CSS0008066' => 'camsi', 'CSS0009120' => 'camsi', 'CSS0015512' => 'camsi', 'CSS0022409' => 'camsi', 'CSS0025358' => 'camsi', 'CSS0044547' => 'camsi', 'DCAR_013057' => 'dca', 'DCAR_015058' => 'dca', 'DCAR_016027' => 'dca', 'DCAR_017327' => 'dca', 'DCAR_020743' => 'dca', 'DCAR_026157' => 'dca', 'DCAR_032339' => 'dca', 'DCAR_032340' => 'dca', 'Dinv11200' => 'din', 'Dinv11201' => 'din', 'Dinv20631' => 'din', 'Dinv23182' => 'din', 'Dinv33466' => 'din', 'Dinv33583' => 'din', 'Dinv38565' => 'din', 'Duzib068G0200' => 'dzi', 'Duzib147G0132' => 'dzi', 'Duzib147G0635' => 'dzi', 'Duzib205G1670' => 'dzi', 'Duzib251G0606' => 'dzi', 'ECA232G3336' => 'eca', 'ECA232G3763' => 'eca', 'ECA232G4845' => 'eca', 'ECA234G1607' => 'eca', 'ECA246G0932' => 'eca', 'ECA247G0781' => 'eca', 'ECA247G1932' => 'eca', 'ECA247G2079' => 'eca', 'ECA247G3338' => 'eca', 'ECA247G4115' => 'eca', 'EL10Ac3g06552' => 'bvu', 'EL10Ac5g10721' => 'bvu', 'EL10Ac5g10722' => 'bvu', 'EL10Ac5g10723' => 'bvu', 'EL10Ac5g11361' => 'bvu', 'EL10Ac6g13553' => 'bvu', 'EL10As8g23872' => 'bvu', 'Eucgr.B00250' => 'egr', 'Eucgr.B00251' => 'egr', 'Eucgr.B03533' => 'egr', 'Eucgr.I02381' => 'egr', 'Eucgr.K02700' => 'egr', 'FAN02G0174' => 'fan', 'FAN02G3146' => 'fan', 'FAN04G1672' => 'fan', 'FAN04G2273' => 'fan', 'FAN05G2791' => 'fan', 'FAN05G4035' => 'fan', 'FAN07G0834' => 'fan', 'FAN08G1198' => 'fan', 'FAN09G4182' => 'fan', 'FAN12G0496' => 'fan', 'FAN13G1027' => 'fan', 'FAN13G2951' => 'fan', 'FAN14G0705' => 'fan', 'FAN14G0720' => 'fan', 'FAN17G0201' => 'fan', 'FAN17G2665' => 'fan', 'FAN18G1456' => 'fan', 'FAN18G1525' => 'fan', 'FAN18G3500' => 'fan', 'FAN28G2670' => 'fan', 'FvH4_1g12391' => 'fve', 'FvH4_4g23220' => 'fve', 'FvH4_5g08810' => 'fve', 'FvH4_5g28960' => 'fve', 'FvH4_6g42820' => 'fve', 'FvH4_6g51110' => 'fve', 'Glyma.02G051802' => 'gma', 'Glyma.04G185300' => 'gma', 'Glyma.05G202900' => 'gma', 'Glyma.08G010300' => 'gma', 'Glyma.16G131900' => 'gma', 'Glyma.17G087900' => 'gma', 'Gohir.A07G048600' => 'ghi', 'Gohir.A11G179000' => 'ghi', 'Gohir.A12G140900' => 'ghi', 'Gohir.A12G140950' => 'ghi', 'Gohir.A12G191700' => 'ghi', 'Gohir.A13G086300' => 'ghi', 'Gohir.D07G052900' => 'ghi', 'Gohir.D11G186600' => 'ghi', 'Gohir.D12G145575' => 'ghi', 'Gohir.D12G145650' => 'ghi', 'Gohir.D12G145725' => 'ghi', 'Gohir.D12G194050' => 'ghi', 'Gohir.D13G091800' => 'ghi', 'Gorai.001G055900' => 'gra', 'Gorai.007G198400' => 'gra', 'Gorai.008G157000' => 'gra', 'Gorai.008G157100' => 'gra', 'Gorai.008G208700' => 'gra', 'Gorai.010G138700' => 'gra', 'GSVIVG01000977001' => 'vvi', 'GSVIVG01007708001' => 'vvi', 'GSVIVG01008587001' => 'vvi', 'GSVIVG01018849001' => 'vvi', 'GSVIVG01032432001' => 'vvi', 'HanXRQChr02g0034131' => 'han', 'HanXRQChr02g0035981' => 'han', 'HanXRQChr02g0035991' => 'han', 'HanXRQChr05g0155611' => 'han', 'HanXRQChr05g0155621' => 'han', 'HanXRQChr08g0236501' => 'han', 'HanXRQChr09g0261321' => 'han', 'HanXRQChr09g0272081' => 'han', 'HanXRQChr10g0310741' => 'han', 'HanXRQChr11g0325591' => 'han', 'HanXRQChr12g0385691' => 'han', 'HanXRQChr13g0387801' => 'han', 'HanXRQChr15g0463011' => 'han', 'Haze_03826' => 'cav', 'Haze_03827' => 'cav', 'Haze_07183' => 'cav', 'Haze_07537' => 'cav', 'Haze_07539' => 'cav', 'Haze_12461' => 'cav', 'Haze_16115' => 'cav', 'Haze_16808' => 'cav', 'Haze_18531' => 'cav', 'Hma1.2p1_0046F.1_g026700' => 'hma', 'Hma1.2p1_0046F.1_g026710' => 'hma', 'Hma1.2p1_0168F.1_g074340' => 'hma', 'Hma1.2p1_0266F.1_g107030' => 'hma', 'Hma1.2p1_0266F.1_g107060' => 'hma', 'Hma1.2p1_0275F.1_g110510' => 'hma', 'Hma1.2p1_0592F.1_g185490' => 'hma', 'Hma1.2p1_0592F.1_g185500' => 'hma', 'Hma1.2p1_0592F.1_g185510' => 'hma', 'Hma1.2p1_0592F.1_g185520' => 'hma', 'Hma1.2p1_0592F.1_g185530' => 'hma', 'Hma1.2p1_0818F.1_g223450' => 'hma', 'HPP92_009708' => 'vpl', 'HPP92_009793' => 'vpl', 'HPP92_009796' => 'vpl', 'HPP92_009797' => 'vpl', 'HPP92_014940' => 'vpl', 'HPP92_014988' => 'vpl', 'Hund02463' => 'sun', 'Hund02760' => 'sun', 'Hund05071' => 'sun', 'Hund10108' => 'sun', 'Hund11204' => 'sun', 'Hund14016' => 'sun', 'Hund16464' => 'sun', 'Lalb_Chr09g0333391' => 'lal', 'Lalb_Chr11g0070461' => 'lal', 'Lalb_Chr12g0201671' => 'lal', 'Lalb_Chr13g0297161' => 'lal', 'Lj1g0002823' => 'lja', 'Lj3C1074T6' => 'lonja', 'Lj4A212T28' => 'lonja', 'Lj4g0005516' => 'lja', 'Lj4g0013705' => 'lja', 'Lj4g0027865' => 'lja', 'Lj5C92G16' => 'lonja', 'Lj5C92T12' => 'lonja', 'Lj7C596T3' => 'lonja', 'Lj9A446G59' => 'lonja', 'Lj9A482G21' => 'lonja', 'Lsat_1_v5_gn_1_28261' => 'lsa', 'Lsat_1_v5_gn_1_28281' => 'lsa', 'Lsat_1_v5_gn_1_32721' => 'lsa', 'Lsat_1_v5_gn_4_151760' => 'lsa', 'Lsat_1_v5_gn_4_2120' => 'lsa', 'Lsat_1_v5_gn_4_75761' => 'lsa', 'Lsat_1_v5_gn_5_10920' => 'lsa', 'Manes.02G099900' => 'mes', 'Manes.11G096200' => 'mes', 'Manes.12G007200' => 'mes', 'Manes.14G048300' => 'mes', 'Manes.17G114700' => 'mes', 'Mapoly0002s0070' => 'mpo', 'Mapoly0029s0099' => 'mpo', 'MBI07_g24742_MAGBIO' => 'mbi', 'MBI10_g27988_MAGBIO' => 'mbi', 'MBI11_g13057_MAGBIO' => 'mbi', 'MD02G1137200' => 'mdo', 'MD06G1137200' => 'mdo', 'MD07G1122300' => 'mdo', 'MD09G1078200' => 'mdo', 'MD13G1123700' => 'mdo', 'MD14G1151900' => 'mdo', 'MD17G1030900' => 'mdo', 'MD17G1068200' => 'mdo', 'MD17G1068600' => 'mdo', 'Medtr3g077540' => 'mtr', 'Medtr4g105530' => 'mtr', 'Medtr8g076580' => 'mtr', 'Medtr8g076590' => 'mtr', 'Medtr8g096410' => 'mtr', 'MELO3C016411.2' => 'cme', 'MELO3C017780.2' => 'cme', 'MELO3C022560.2' => 'cme', 'MELO3C026187.2' => 'cme', 'MELO3C026286.2' => 'cme', 'MELO3C032854.2' => 'cme', 'Migut.H02495' => 'egut', 'Migut.I00561' => 'egut', 'Migut.K01015' => 'egut', 'Migut.K01016' => 'egut', 'Migut.L00743' => 'egut', 'Migut.L00744' => 'egut', 'Migut.L00746' => 'egut', 'Migut.L00798' => 'egut', 'Migut.L00799' => 'egut', 'Migut.N02096' => 'egut', 'MSTRG.11259' => 'ama', 'MSTRG.23142' => 'ama', 'MSTRG.2499' => 'ama', 'Nitab4.5_0000003g0730' => 'nta', 'Nitab4.5_0000137g0020' => 'nta', 'Nitab4.5_0000721g0210' => 'nta', 'Nitab4.5_0000723g0050' => 'nta', 'Nitab4.5_0000913g0070' => 'nta', 'Nitab4.5_0001332g0040' => 'nta', 'Nitab4.5_0001771g0050' => 'nta', 'Nitab4.5_0001918g0050' => 'nta', 'Nitab4.5_0002686g0030' => 'nta', 'Nitab4.5_0003156g0020' => 'nta', 'Nitab4.5_0003383g0040' => 'nta', 'Nitab4.5_0003918g0010' => 'nta', 'Nitab4.5_0006760g0010' => 'nta', 'Nn1g05981' => 'nnu', 'Nn1g06288' => 'nnu', 'Nn3g16371' => 'nnu', 'Nn3g16786' => 'nnu', 'Nn4g22232' => 'nnu', 'Oeu005144.1' => 'oeu', 'Oeu005145.1' => 'oeu', 'Oeu011348.1' => 'oeu', 'Oeu016415.1' => 'oeu', 'Oeu023501.1' => 'oeu', 'Oeu044473.1' => 'oeu', 'Oeu048892.2' => 'oeu', 'Os01g0549200' => 'osa', 'Os02g0469300' => 'osa', 'Os04g0311100' => 'osa', 'Os06g0474900' => 'osa', 'Os10g0181700' => 'osa', 'Os11g0454800' => 'osa', 'Peaxi162Scf00037g00714' => 'pax', 'Peaxi162Scf00084g01217' => 'pax', 'Peaxi162Scf00257g00217' => 'pax', 'Peaxi162Scf00516g00215' => 'pax', 'Peaxi162Scf00689g00123' => 'pax', 'PGR044G2719' => 'pgr', 'PGR083G1360' => 'pgr', 'PGR102G2849' => 'pgr', 'PGR119G2534' => 'pgr', 'PGSC0003DMG400003538' => 'stu', 'PGSC0003DMG400028138' => 'stu', 'PGSC0003DMG400031732' => 'stu', 'PGSC0003DMG400038165' => 'stu', 'Phvul.002G284600' => 'pvu', 'Phvul.003G258200' => 'pvu', 'Phvul.009G176500' => 'pvu', 'Potri.003G167201' => 'ptr', 'Potri.005G118400' => 'ptr', 'Potri.012G089000' => 'ptr', 'Potri.012G102800' => 'ptr', 'Potri.015G079400' => 'ptr', 'Potri.015G100900' => 'ptr', 'Pp3c14_9810' => 'ppa', 'Pp3c15_10450' => 'ppa', 'Pp3c20_19150' => 'ppa', 'Pp3c23_12740' => 'ppa', 'Pp3c23_6310' => 'ppa', 'Pp3c24_3720' => 'ppa', 'Pp3c27_2580' => 'ppa', 'Pp3c9_8990' => 'ppa', 'PRCOL_00002854' => 'pco', 'Prupe.1G221200' => 'ppe', 'Prupe.3G289000' => 'ppe', 'Prupe.5G147000' => 'ppe', 'Prupe.6G157300' => 'ppe', 'Prupe.7G163400' => 'ppe', 'Psat0s2177g0040' => 'psa', 'Psat3g174760' => 'psa', 'Psat3g192160' => 'psa', 'Psat4g058520' => 'psa', 'Psat4g096840' => 'psa', 'Psat7g037320' => 'psa', 'PSO017G1274' => 'pso', 'PSO017G5166' => 'pso', 'PSO063G4558' => 'pso', 'PSO170G4458' => 'pso', 'PSO170G5005' => 'pso', 'PSO210G6156' => 'pso', 'PSO210G6635' => 'pso', 'PSO210G7397' => 'pso', 'PSO210G7700' => 'pso', 'PSO455G0035' => 'pso', 'PSO455G0180' => 'pso', 'PSO478G4515' => 'pso', 'PSO832G1305' => 'pso', 'PSO832G3489' => 'pso', 'QL02p075247' => 'qlo', 'QL03p051148' => 'qlo', 'QL05p010313' => 'qlo', 'QL06p034627' => 'qlo', 'QL10p001889' => 'qlo', 'QL10p010846' => 'qlo', 'RcHm_v2.0_Chr1g0350621' => 'rch', 'RcHm_v2.0_Chr1g0350641' => 'rch', 'RcHm_v2.0_Chr2g0092891' => 'rch', 'RcHm_v2.0_Chr2g0100251' => 'rch', 'RcHm_v2.0_Chr2g0158661' => 'rch', 'RcHm_v2.0_Chr2g0172741' => 'rch', 'RcHm_v2.0_Chr4g0429571' => 'rch', 'RcHm_v2.0_Chr5g0042471' => 'rch', 'RcHm_v2.0_Chr7g0189451' => 'rch', 'Rhsim08G0052000' => 'rsi', 'Rhsim08G0174400' => 'rsi', 'Rhsim08G0193200' => 'rsi', 'Rhsim10G0214800' => 'rsi', 'Rhsim10G0214900' => 'rsi', 'Rhsim10G0215000' => 'rsi', 'Rhsim12G0022900' => 'rsi', 'Rhsim12G0177500' => 'rsi', 'Rhsim12G0177700' => 'rsi', 'Sabra03G0122600' => 'sbr', 'Sabra05G0097400' => 'sbr', 'Sabra12G0064100' => 'sbr', 'Sabra15G0121300' => 'sbr', 'SalBow2G0642' => 'sbo', 'SalBow5G2667' => 'sbo', 'SalBow5G4873' => 'sbo', 'SalBow8G2395' => 'sbo', 'Sc03g0003290' => 'sci', 'Sc10g0010130' => 'sci', 'Sc22g0003650' => 'sci', 'Sed0001603' => 'sed', 'Sed0004259' => 'sed', 'Sed0006789' => 'sed', 'Sed0011838' => 'sed', 'Sed0012964' => 'sed', 'Sed0016383' => 'sed', 'Sed0019010' => 'sed', 'Sed0020188' => 'sed', 'SEGI_04702' => 'sgi', 'SEGI_17231' => 'sgi', 'SEGI_18877' => 'sgi', 'SEGI_25196' => 'sgi', 'SEGI_25515' => 'sgi', 'SEGI_28445' => 'sgi', 'SEGI_37452' => 'sgi', 'SGA_v2.0_scaffold188G40336' => 'sas', 'SGA_v2.0_scaffold228G43247' => 'sas', 'SGA_v2.0_scaffold280G46853' => 'sas', 'SGA_v2.0_scaffold34G13808' => 'sas', 'SGA_v2.0_scaffold40G15576' => 'sas', 'SGA_v2.0_scaffold611G53188' => 'sas', 'SGA_v2.0_scaffold78G25461' => 'sas', 'SGA_v2.0_scaffold90G27888' => 'sas', 'SHI08601' => 'shi', 'SHI08606' => 'shi', 'SHI17117' => 'shi', 'SHI17119' => 'shi', 'SMO118G0201' => 'smo', 'SMO169G0247' => 'smo', 'SMO176G0006' => 'smo', 'SMO176G0015' => 'smo', 'SMO202G0006' => 'smo', 'SMO240G0050' => 'smo', 'SMO286G0009' => 'smo', 'SMO338G0033' => 'smo', 'SMO356G0533' => 'smo', 'SMO364G0382' => 'smo', 'SMO367G0166' => 'smo', 'SMO367G1098' => 'smo', 'Solyc01g009920.3' => 'sly', 'Solyc01g099300.3' => 'sly', 'Solyc02g084700.3' => 'sly', 'Solyc03g097520.3' => 'sly', 'Solyc06g071580.3' => 'sly', 'Solyc10g081760.3' => 'sly', 'Sopen01g005480' => 'spe', 'Sopen01g042850' => 'spe', 'Sopen02g029370' => 'spe', 'Sopen03g028280' => 'spe', 'Sopen06g027870' => 'spe', 'Sopen10g032270' => 'spe', 'Sp5g18180' => 'spa', 'Sp6g12880' => 'spa', 'Sp6g30850' => 'spa', 'Sp7g22960' => 'spa', 'Sp7g34010' => 'spa', 'SpUn1326_0010' => 'spa', 'TAR371G0242' => 'tar', 'TAR622G0638' => 'tar', 'TAR628G1548' => 'tar', 'TAR629G1079' => 'tar', 'TAR629G3413' => 'tar', 'THA.LOC104804249' => 'tha', 'THA.LOC104808315' => 'tha', 'THA.LOC104809238' => 'tha', 'THA.LOC104825484' => 'tha', 'Thecc.01G025500' => 'tca', 'Thecc.03G015800' => 'tca', 'Thecc.03G018000' => 'tca', 'Thecc.03G134800' => 'tca', 'Thecc.04G014700' => 'tca', 'Thhalv10006991m.g' => 'esa', 'Thhalv10012707m.g' => 'esa', 'Thhalv10015739m.g' => 'esa', 'Thhalv10024553m.g' => 'esa', 'Thhalv10024673m.g' => 'esa', 'Thhalv10029187m.g' => 'esa', 'TPR.G12971' => 'tpr', 'TPR.G29396' => 'tpr', 'TPR.G33376' => 'tpr', 'TPR.G35508' => 'tpr', 'TPR.G35516' => 'tpr', 'TPR.G37317' => 'tpr', 'TPR.G37389' => 'tpr', 'TPR.G37523' => 'tpr', 'TPR.G559' => 'tpr', 'TWI14G0070' => 'twi', 'TWI14G0729' => 'twi', 'TWI18G0596' => 'twi', 'TWI39G0780' => 'twi', 'TWI39G0850' => 'twi', 'TWI73G1052' => 'twi', 'unitig_52.g17485' => 'ugi', 'unitig_61.g26355' => 'ugi', 'vmacro01040' => 'vma', 'vmacro16731' => 'vma', 'vmacro18270' => 'vma', 'vmacro19142' => 'vma', 'vmacro19407' => 'vma', 'vmacro19408' => 'vma', 'vmacro21899' => 'vma', 'vmacro21900' => 'vma', 'vmacro21901' => 'vma', 'VMungo0251G0490' => 'vmu', 'VMungo0251G1748' => 'vmu', 'VMungo1309G0421' => 'vmu', 'Zm00001eb086500' => 'zma', 'Zm00001eb150680' => 'zma', 'Zm00001eb162330' => 'zma', 'Zm00001eb203130' => 'zma', 'Zm00001eb369480' => 'zma', 'Zm00001eb382340' => 'zma', 'Zm00001eb416360' => 'zma' ) $gf_id = 'HOM05D000902' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000902' ) $data_identifier = 'HOM05D000902' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 13, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 10, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 6, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 9, 'hma' => (int) 12, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 4, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 6, 'ppa' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 6, 'rch' => (int) 9, 'rsi' => (int) 9, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 12, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 3, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416360' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000902', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '663', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02470' => 'bna', 'A01p16260' => 'bna', 'A02p01680' => 'bna', 'A03p16600' => 'bna', 'A03p55660' => 'bna', 'A03p64160' => 'bna', 'A03p64170' => 'bna', 'A08p31900' => 'bna', 'A09p59530' => 'bna', 'A10p08230' => 'bna', 'A10p25090' => 'bna', 'Aa31LG3G7100' => 'aar', 'Aa31LG3G7110' => 'aar', 'Aa31LG6G13160' => 'aar', 'Aa31LG7G10770' => 'aar', 'Aa31LG7G3830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2723' => 'aag', 'Actinidia08045' => 'ach', 'Actinidia08888' => 'ach', 'Actinidia18333' => 'ach', 'Actinidia19334' => 'ach', 'Actinidia25552' => 'ach', 'Actinidia26089' => 'ach', 'Actinidia30615' => 'ach', 'Actinidia30616' => 'ach', 'Actinidia33083' => 'ach', 'Actinidia35762' => 'ach', 'Ah.02g110620' => 'amhyb', 'Ah.11g046390' => 'amhyb', 'AL1G31670' => 'aly', 'AL6G23730' => 'aly', 'AL7G14740' => 'aly', 'AL7G14750' => 'aly', 'AL7G14760' => 'aly', 'AL7G28220' => 'aly', 'AL8G24940' => 'aly', 'Aqoxy3G01665' => 'aox', 'Aqoxy3G02853' => 'aox', 'Aqoxy5G01513' => 'aox', 'Aqoxy5G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8SKA4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ75LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKDA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0LJZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7REX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZP4YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWX7I5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2QKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS0L9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPCD8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q161UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC7XCF' => 'arhy', 'AT1G19100' => 'ath', 'AT4G24970' => 'ath', 'AT4G36270' => 'ath', 'AT4G36280' => 'ath', 'AT4G36290' => 'ath', 'AT5G13130' => 'ath', 'AT5G50780' => 'ath', 'ATR0582G266' => 'atr', 'ATR0661G195' => 'atr', 'ATR1152G031' => 'atr', 'Atru.chr11.2382' => 'acertr', 'Atru.chr12.2337' => 'acertr', 'Atru.chr3.744' => 'acertr', 'Atru.chr6.1870' => 'acertr', 'Atru.chr9.2515' => 'acertr', 'AUR62004120' => 'cqu', 'AUR62005667' => 'cqu', 'AUR62007634' => 'cqu', 'AUR62008186' => 'cqu', 'AUR62008187' => 'cqu', 'AUR62008188' => 'cqu', 'AUR62027954' => 'cqu', 'AUR62028766' => 'cqu', 'AUR62028767' => 'cqu', 'AUR62028768' => 'cqu', 'AUR62028886' => 'cqu', 'AUR62029563' => 'cqu', 'AUR62038832' => 'cqu', 'BcaB01g04149' => 'bca', 'BcaB03g12940' => 'bca', 'BcaB03g13090' => 'bca', 'BcaB03g14466' => 'bca', 'BcaB05g24035' => 'bca', 'BcaC01g06050' => 'bca', 'BcaC04g19148' => 'bca', 'BcaC04g20761' => 'bca', 'BcaC06g32845' => 'bca', 'BcaC07g41274' => 'bca', 'BcaC09g50827' => 'bca', 'BcaNung00741' => 'bca', 'BcaNung00742' => 'bca', 'BcaNung01859' => 'bca', 'BcaNung03985' => 'bca', 'BcaNung03989' => 'bca', 'BcaNung05661' => 'bca', 'BolC1t00257H' => 'bol', 'BolC1t01956H' => 'bol', 'BolC2t06534H' => 'bol', 'BolC3t14334H' => 'bol', 'BolC5t30451H' => 'bol', 'BolC7t45880H' => 'bol', 'BolC7t46586H' => 'bol', 'BolC8t49301H' => 'bol', 'BolC8t51837H' => 'bol', 'BolC9t56822H' => 'bol', 'BolC9t59235H' => 'bol', 'BraA01t00234Z' => 'bra', 'BraA01t01563Z' => 'bra', 'BraA02t05147Z' => 'bra', 'BraA03t10947Z' => 'bra', 'BraA03t14633Z' => 'bra', 'BraA08t35112Z' => 'bra', 'BraA09t41330Z' => 'bra', 'BraA10t44570Z' => 'bra', 'C01p02670' => 'bna', 'C01p20260' => 'bna', 'C02p05890' => 'bna', 'C03p19530' => 'bna', 'C05p17470' => 'bna', 'C07p53900' => 'bna', 'C07p61630' => 'bna', 'C08p16800' => 'bna', 'C08p42810' => 'bna', 'C09p39480' => 'bna', 'C09p63980' => 'bna', 'CAN.G1001.7' => 'can', 'CAN.G1034.55' => 'can', 'CAN.G143.7' => 'can', 'CAN.G3340.1' => 'can', 'CAN.G358.19' => 'can', 'CAN.G373.2' => 'can', 'CAN.G674.16' => 'can', 'CAN.G674.17' => 'can', 'CAN.G674.18' => 'can', 'CAN.G732.2' => 'can', 'CAN.G732.3' => 'can', 'CAN.G993.39' => 'can', 'CANSAT01G2052' => 'cansat', 'CANSAT80G0070' => 'cansat', 'CANSAT80G0483' => 'cansat', 'CANSAT80G0625' => 'cansat', 'CARHR019690' => 'chi', 'CARHR080280' => 'chi', 'CARHR152750' => 'chi', 'CARHR152760' => 'chi', 'CARHR152770' => 'chi', 'CARHR200340' => 'chi', 'CARHR232370' => 'chi', 'CARHR244670' => 'chi', 'CARHR244680' => 'chi', 'CARHR257520' => 'chi', 'Carub.0001s1872' => 'cru', 'Carub.0006s1130' => 'cru', 'Carub.0007s0396' => 'cru', 'Carub.0007s0397' => 'cru', 'Carub.0007s1608' => 'cru', 'Carub.0008s1068' => 'cru', 'Carub.0008s1077' => 'cru', 'Ca_16158_v3' => 'car', 'Ca_17571_v3' => 'car', 'Ca_21936_v3' => 'car', 'Ca_22350_v3' => 'car', 'CBR_g22445' => 'cbr', 'CBR_g26290' => 'cbr', 'Cc04_g09610' => 'ccan', 'Cc04_g12280' => 'ccan', 'Cc07_g10230' => 'ccan', 'CDE02G0093' => 'cde', 'CDE02G0701' => 'cde', 'CDE04G1050' => 'cde', 'CDE05G1833' => 'cde', 'CDE05G3058' => 'cde', 'CDE05G3380' => 'cde', 'CDE06G0536' => 'cde', 'Cfa006923' => 'cfa', 'Cfa009402' => 'cfa', 'Cfa018751' => 'cfa', 'Cfa019164' => 'cfa', 'Cfa022935' => 'cfa', 'Ciclev10019081m.g' => 'ccl', 'Ciclev10025076m.g' => 'ccl', 'Ciclev10030712m.g' => 'ccl', 'Ciclev10033760m.g' => 'ccl', 'CiPaw.05G105600' => 'cil', 'CiPaw.08G136700' => 'cil', 'CiPaw.11G003900' => 'cil', 'CiPaw.11G023700' => 'cil', 'CiPaw.12G003700' => 'cil', 'ClCG06G017100' => 'cla', 'ClCG06G018110' => 'cla', 'ClCG07G008800' => 'cla', 'ClCG07G015330' => 'cla', 'COL.COLO4_13698' => 'col', 'COL.COLO4_16659' => 'col', 'COL.COLO4_21986' => 'col', 'COL.COLO4_24049' => 'col', 'COL.COLO4_29061' => 'col', 'COL.COLO4_29075' => 'col', 'COL.COLO4_30094' => 'col', 'Cpa.g.c33689' => 'cpa', 'Cpa.g.sc108.39' => 'cpa', 'Cpa.g.sc108.41' => 'cpa', 'Cpa.g.sc1163.1' => 'cpa', 'Cpa.g.sc4.155' => 'cpa', 'Cpa.g.sc6.194' => 'cpa', 'CsaV3_1G000340' => 'csa', 'CsaV3_1G001400' => 'csa', 'CsaV3_4G002220' => 'csa', 'CsaV3_4G005370' => 'csa', 'CSS0007487' => 'camsi', 'CSS0008066' => 'camsi', 'CSS0009120' => 'camsi', 'CSS0015512' => 'camsi', 'CSS0022409' => 'camsi', 'CSS0025358' => 'camsi', 'CSS0044547' => 'camsi', 'DCAR_013057' => 'dca', 'DCAR_015058' => 'dca', 'DCAR_016027' => 'dca', 'DCAR_017327' => 'dca', 'DCAR_020743' => 'dca', 'DCAR_026157' => 'dca', 'DCAR_032339' => 'dca', 'DCAR_032340' => 'dca', 'Dinv11200' => 'din', 'Dinv11201' => 'din', 'Dinv20631' => 'din', 'Dinv23182' => 'din', 'Dinv33466' => 'din', 'Dinv33583' => 'din', 'Dinv38565' => 'din', 'Duzib068G0200' => 'dzi', 'Duzib147G0132' => 'dzi', 'Duzib147G0635' => 'dzi', 'Duzib205G1670' => 'dzi', 'Duzib251G0606' => 'dzi', 'ECA232G3336' => 'eca', 'ECA232G3763' => 'eca', 'ECA232G4845' => 'eca', 'ECA234G1607' => 'eca', 'ECA246G0932' => 'eca', 'ECA247G0781' => 'eca', 'ECA247G1932' => 'eca', 'ECA247G2079' => 'eca', 'ECA247G3338' => 'eca', 'ECA247G4115' => 'eca', 'EL10Ac3g06552' => 'bvu', 'EL10Ac5g10721' => 'bvu', 'EL10Ac5g10722' => 'bvu', 'EL10Ac5g10723' => 'bvu', 'EL10Ac5g11361' => 'bvu', 'EL10Ac6g13553' => 'bvu', 'EL10As8g23872' => 'bvu', 'Eucgr.B00250' => 'egr', 'Eucgr.B00251' => 'egr', 'Eucgr.B03533' => 'egr', 'Eucgr.I02381' => 'egr', 'Eucgr.K02700' => 'egr', 'FAN02G0174' => 'fan', 'FAN02G3146' => 'fan', 'FAN04G1672' => 'fan', 'FAN04G2273' => 'fan', 'FAN05G2791' => 'fan', 'FAN05G4035' => 'fan', 'FAN07G0834' => 'fan', 'FAN08G1198' => 'fan', 'FAN09G4182' => 'fan', 'FAN12G0496' => 'fan', 'FAN13G1027' => 'fan', 'FAN13G2951' => 'fan', 'FAN14G0705' => 'fan', 'FAN14G0720' => 'fan', 'FAN17G0201' => 'fan', 'FAN17G2665' => 'fan', 'FAN18G1456' => 'fan', 'FAN18G1525' => 'fan', 'FAN18G3500' => 'fan', 'FAN28G2670' => 'fan', 'FvH4_1g12391' => 'fve', 'FvH4_4g23220' => 'fve', 'FvH4_5g08810' => 'fve', 'FvH4_5g28960' => 'fve', 'FvH4_6g42820' => 'fve', 'FvH4_6g51110' => 'fve', 'Glyma.02G051802' => 'gma', 'Glyma.04G185300' => 'gma', 'Glyma.05G202900' => 'gma', 'Glyma.08G010300' => 'gma', 'Glyma.16G131900' => 'gma', 'Glyma.17G087900' => 'gma', 'Gohir.A07G048600' => 'ghi', 'Gohir.A11G179000' => 'ghi', 'Gohir.A12G140900' => 'ghi', 'Gohir.A12G140950' => 'ghi', 'Gohir.A12G191700' => 'ghi', 'Gohir.A13G086300' => 'ghi', 'Gohir.D07G052900' => 'ghi', 'Gohir.D11G186600' => 'ghi', 'Gohir.D12G145575' => 'ghi', 'Gohir.D12G145650' => 'ghi', 'Gohir.D12G145725' => 'ghi', 'Gohir.D12G194050' => 'ghi', 'Gohir.D13G091800' => 'ghi', 'Gorai.001G055900' => 'gra', 'Gorai.007G198400' => 'gra', 'Gorai.008G157000' => 'gra', 'Gorai.008G157100' => 'gra', 'Gorai.008G208700' => 'gra', 'Gorai.010G138700' => 'gra', 'GSVIVG01000977001' => 'vvi', 'GSVIVG01007708001' => 'vvi', 'GSVIVG01008587001' => 'vvi', 'GSVIVG01018849001' => 'vvi', 'GSVIVG01032432001' => 'vvi', 'HanXRQChr02g0034131' => 'han', 'HanXRQChr02g0035981' => 'han', 'HanXRQChr02g0035991' => 'han', 'HanXRQChr05g0155611' => 'han', 'HanXRQChr05g0155621' => 'han', 'HanXRQChr08g0236501' => 'han', 'HanXRQChr09g0261321' => 'han', 'HanXRQChr09g0272081' => 'han', 'HanXRQChr10g0310741' => 'han', 'HanXRQChr11g0325591' => 'han', 'HanXRQChr12g0385691' => 'han', 'HanXRQChr13g0387801' => 'han', 'HanXRQChr15g0463011' => 'han', 'Haze_03826' => 'cav', 'Haze_03827' => 'cav', 'Haze_07183' => 'cav', 'Haze_07537' => 'cav', 'Haze_07539' => 'cav', 'Haze_12461' => 'cav', 'Haze_16115' => 'cav', 'Haze_16808' => 'cav', 'Haze_18531' => 'cav', 'Hma1.2p1_0046F.1_g026700' => 'hma', 'Hma1.2p1_0046F.1_g026710' => 'hma', 'Hma1.2p1_0168F.1_g074340' => 'hma', 'Hma1.2p1_0266F.1_g107030' => 'hma', 'Hma1.2p1_0266F.1_g107060' => 'hma', 'Hma1.2p1_0275F.1_g110510' => 'hma', 'Hma1.2p1_0592F.1_g185490' => 'hma', 'Hma1.2p1_0592F.1_g185500' => 'hma', 'Hma1.2p1_0592F.1_g185510' => 'hma', 'Hma1.2p1_0592F.1_g185520' => 'hma', 'Hma1.2p1_0592F.1_g185530' => 'hma', 'Hma1.2p1_0818F.1_g223450' => 'hma', 'HPP92_009708' => 'vpl', 'HPP92_009793' => 'vpl', 'HPP92_009796' => 'vpl', 'HPP92_009797' => 'vpl', 'HPP92_014940' => 'vpl', 'HPP92_014988' => 'vpl', 'Hund02463' => 'sun', 'Hund02760' => 'sun', 'Hund05071' => 'sun', 'Hund10108' => 'sun', 'Hund11204' => 'sun', 'Hund14016' => 'sun', 'Hund16464' => 'sun', 'Lalb_Chr09g0333391' => 'lal', 'Lalb_Chr11g0070461' => 'lal', 'Lalb_Chr12g0201671' => 'lal', 'Lalb_Chr13g0297161' => 'lal', 'Lj1g0002823' => 'lja', 'Lj3C1074T6' => 'lonja', 'Lj4A212T28' => 'lonja', 'Lj4g0005516' => 'lja', 'Lj4g0013705' => 'lja', 'Lj4g0027865' => 'lja', 'Lj5C92G16' => 'lonja', 'Lj5C92T12' => 'lonja', 'Lj7C596T3' => 'lonja', 'Lj9A446G59' => 'lonja', 'Lj9A482G21' => 'lonja', 'Lsat_1_v5_gn_1_28261' => 'lsa', 'Lsat_1_v5_gn_1_28281' => 'lsa', 'Lsat_1_v5_gn_1_32721' => 'lsa', 'Lsat_1_v5_gn_4_151760' => 'lsa', 'Lsat_1_v5_gn_4_2120' => 'lsa', 'Lsat_1_v5_gn_4_75761' => 'lsa', 'Lsat_1_v5_gn_5_10920' => 'lsa', 'Manes.02G099900' => 'mes', 'Manes.11G096200' => 'mes', 'Manes.12G007200' => 'mes', 'Manes.14G048300' => 'mes', 'Manes.17G114700' => 'mes', 'Mapoly0002s0070' => 'mpo', 'Mapoly0029s0099' => 'mpo', 'MBI07_g24742_MAGBIO' => 'mbi', 'MBI10_g27988_MAGBIO' => 'mbi', 'MBI11_g13057_MAGBIO' => 'mbi', 'MD02G1137200' => 'mdo', 'MD06G1137200' => 'mdo', 'MD07G1122300' => 'mdo', 'MD09G1078200' => 'mdo', 'MD13G1123700' => 'mdo', 'MD14G1151900' => 'mdo', 'MD17G1030900' => 'mdo', 'MD17G1068200' => 'mdo', 'MD17G1068600' => 'mdo', 'Medtr3g077540' => 'mtr', 'Medtr4g105530' => 'mtr', 'Medtr8g076580' => 'mtr', 'Medtr8g076590' => 'mtr', 'Medtr8g096410' => 'mtr', 'MELO3C016411.2' => 'cme', 'MELO3C017780.2' => 'cme', 'MELO3C022560.2' => 'cme', 'MELO3C026187.2' => 'cme', 'MELO3C026286.2' => 'cme', 'MELO3C032854.2' => 'cme', 'Migut.H02495' => 'egut', 'Migut.I00561' => 'egut', 'Migut.K01015' => 'egut', 'Migut.K01016' => 'egut', 'Migut.L00743' => 'egut', 'Migut.L00744' => 'egut', 'Migut.L00746' => 'egut', 'Migut.L00798' => 'egut', 'Migut.L00799' => 'egut', 'Migut.N02096' => 'egut', 'MSTRG.11259' => 'ama', 'MSTRG.23142' => 'ama', 'MSTRG.2499' => 'ama', 'Nitab4.5_0000003g0730' => 'nta', 'Nitab4.5_0000137g0020' => 'nta', 'Nitab4.5_0000721g0210' => 'nta', 'Nitab4.5_0000723g0050' => 'nta', 'Nitab4.5_0000913g0070' => 'nta', 'Nitab4.5_0001332g0040' => 'nta', 'Nitab4.5_0001771g0050' => 'nta', 'Nitab4.5_0001918g0050' => 'nta', 'Nitab4.5_0002686g0030' => 'nta', 'Nitab4.5_0003156g0020' => 'nta', 'Nitab4.5_0003383g0040' => 'nta', 'Nitab4.5_0003918g0010' => 'nta', 'Nitab4.5_0006760g0010' => 'nta', 'Nn1g05981' => 'nnu', 'Nn1g06288' => 'nnu', 'Nn3g16371' => 'nnu', 'Nn3g16786' => 'nnu', 'Nn4g22232' => 'nnu', 'Oeu005144.1' => 'oeu', 'Oeu005145.1' => 'oeu', 'Oeu011348.1' => 'oeu', 'Oeu016415.1' => 'oeu', 'Oeu023501.1' => 'oeu', 'Oeu044473.1' => 'oeu', 'Oeu048892.2' => 'oeu', 'Os01g0549200' => 'osa', 'Os02g0469300' => 'osa', 'Os04g0311100' => 'osa', 'Os06g0474900' => 'osa', 'Os10g0181700' => 'osa', 'Os11g0454800' => 'osa', 'Peaxi162Scf00037g00714' => 'pax', 'Peaxi162Scf00084g01217' => 'pax', 'Peaxi162Scf00257g00217' => 'pax', 'Peaxi162Scf00516g00215' => 'pax', 'Peaxi162Scf00689g00123' => 'pax', 'PGR044G2719' => 'pgr', 'PGR083G1360' => 'pgr', 'PGR102G2849' => 'pgr', 'PGR119G2534' => 'pgr', 'PGSC0003DMG400003538' => 'stu', 'PGSC0003DMG400028138' => 'stu', 'PGSC0003DMG400031732' => 'stu', 'PGSC0003DMG400038165' => 'stu', 'Phvul.002G284600' => 'pvu', 'Phvul.003G258200' => 'pvu', 'Phvul.009G176500' => 'pvu', 'Potri.003G167201' => 'ptr', 'Potri.005G118400' => 'ptr', 'Potri.012G089000' => 'ptr', 'Potri.012G102800' => 'ptr', 'Potri.015G079400' => 'ptr', 'Potri.015G100900' => 'ptr', 'Pp3c14_9810' => 'ppa', 'Pp3c15_10450' => 'ppa', 'Pp3c20_19150' => 'ppa', 'Pp3c23_12740' => 'ppa', 'Pp3c23_6310' => 'ppa', 'Pp3c24_3720' => 'ppa', 'Pp3c27_2580' => 'ppa', 'Pp3c9_8990' => 'ppa', 'PRCOL_00002854' => 'pco', 'Prupe.1G221200' => 'ppe', 'Prupe.3G289000' => 'ppe', 'Prupe.5G147000' => 'ppe', 'Prupe.6G157300' => 'ppe', 'Prupe.7G163400' => 'ppe', 'Psat0s2177g0040' => 'psa', 'Psat3g174760' => 'psa', 'Psat3g192160' => 'psa', 'Psat4g058520' => 'psa', 'Psat4g096840' => 'psa', 'Psat7g037320' => 'psa', 'PSO017G1274' => 'pso', 'PSO017G5166' => 'pso', 'PSO063G4558' => 'pso', 'PSO170G4458' => 'pso', 'PSO170G5005' => 'pso', 'PSO210G6156' => 'pso', 'PSO210G6635' => 'pso', 'PSO210G7397' => 'pso', 'PSO210G7700' => 'pso', 'PSO455G0035' => 'pso', 'PSO455G0180' => 'pso', 'PSO478G4515' => 'pso', 'PSO832G1305' => 'pso', 'PSO832G3489' => 'pso', 'QL02p075247' => 'qlo', 'QL03p051148' => 'qlo', 'QL05p010313' => 'qlo', 'QL06p034627' => 'qlo', 'QL10p001889' => 'qlo', 'QL10p010846' => 'qlo', 'RcHm_v2.0_Chr1g0350621' => 'rch', 'RcHm_v2.0_Chr1g0350641' => 'rch', 'RcHm_v2.0_Chr2g0092891' => 'rch', 'RcHm_v2.0_Chr2g0100251' => 'rch', 'RcHm_v2.0_Chr2g0158661' => 'rch', 'RcHm_v2.0_Chr2g0172741' => 'rch', 'RcHm_v2.0_Chr4g0429571' => 'rch', 'RcHm_v2.0_Chr5g0042471' => 'rch', 'RcHm_v2.0_Chr7g0189451' => 'rch', 'Rhsim08G0052000' => 'rsi', 'Rhsim08G0174400' => 'rsi', 'Rhsim08G0193200' => 'rsi', 'Rhsim10G0214800' => 'rsi', 'Rhsim10G0214900' => 'rsi', 'Rhsim10G0215000' => 'rsi', 'Rhsim12G0022900' => 'rsi', 'Rhsim12G0177500' => 'rsi', 'Rhsim12G0177700' => 'rsi', 'Sabra03G0122600' => 'sbr', 'Sabra05G0097400' => 'sbr', 'Sabra12G0064100' => 'sbr', 'Sabra15G0121300' => 'sbr', 'SalBow2G0642' => 'sbo', 'SalBow5G2667' => 'sbo', 'SalBow5G4873' => 'sbo', 'SalBow8G2395' => 'sbo', 'Sc03g0003290' => 'sci', 'Sc10g0010130' => 'sci', 'Sc22g0003650' => 'sci', 'Sed0001603' => 'sed', 'Sed0004259' => 'sed', 'Sed0006789' => 'sed', 'Sed0011838' => 'sed', 'Sed0012964' => 'sed', 'Sed0016383' => 'sed', 'Sed0019010' => 'sed', 'Sed0020188' => 'sed', 'SEGI_04702' => 'sgi', 'SEGI_17231' => 'sgi', 'SEGI_18877' => 'sgi', 'SEGI_25196' => 'sgi', 'SEGI_25515' => 'sgi', 'SEGI_28445' => 'sgi', 'SEGI_37452' => 'sgi', 'SGA_v2.0_scaffold188G40336' => 'sas', 'SGA_v2.0_scaffold228G43247' => 'sas', 'SGA_v2.0_scaffold280G46853' => 'sas', 'SGA_v2.0_scaffold34G13808' => 'sas', 'SGA_v2.0_scaffold40G15576' => 'sas', 'SGA_v2.0_scaffold611G53188' => 'sas', 'SGA_v2.0_scaffold78G25461' => 'sas', 'SGA_v2.0_scaffold90G27888' => 'sas', 'SHI08601' => 'shi', 'SHI08606' => 'shi', 'SHI17117' => 'shi', 'SHI17119' => 'shi', 'SMO118G0201' => 'smo', 'SMO169G0247' => 'smo', 'SMO176G0006' => 'smo', 'SMO176G0015' => 'smo', 'SMO202G0006' => 'smo', 'SMO240G0050' => 'smo', 'SMO286G0009' => 'smo', 'SMO338G0033' => 'smo', 'SMO356G0533' => 'smo', 'SMO364G0382' => 'smo', 'SMO367G0166' => 'smo', 'SMO367G1098' => 'smo', 'Solyc01g009920.3' => 'sly', 'Solyc01g099300.3' => 'sly', 'Solyc02g084700.3' => 'sly', 'Solyc03g097520.3' => 'sly', 'Solyc06g071580.3' => 'sly', 'Solyc10g081760.3' => 'sly', 'Sopen01g005480' => 'spe', 'Sopen01g042850' => 'spe', 'Sopen02g029370' => 'spe', 'Sopen03g028280' => 'spe', 'Sopen06g027870' => 'spe', 'Sopen10g032270' => 'spe', 'Sp5g18180' => 'spa', 'Sp6g12880' => 'spa', 'Sp6g30850' => 'spa', 'Sp7g22960' => 'spa', 'Sp7g34010' => 'spa', 'SpUn1326_0010' => 'spa', 'TAR371G0242' => 'tar', 'TAR622G0638' => 'tar', 'TAR628G1548' => 'tar', 'TAR629G1079' => 'tar', 'TAR629G3413' => 'tar', 'THA.LOC104804249' => 'tha', 'THA.LOC104808315' => 'tha', 'THA.LOC104809238' => 'tha', 'THA.LOC104825484' => 'tha', 'Thecc.01G025500' => 'tca', 'Thecc.03G015800' => 'tca', 'Thecc.03G018000' => 'tca', 'Thecc.03G134800' => 'tca', 'Thecc.04G014700' => 'tca', 'Thhalv10006991m.g' => 'esa', 'Thhalv10012707m.g' => 'esa', 'Thhalv10015739m.g' => 'esa', 'Thhalv10024553m.g' => 'esa', 'Thhalv10024673m.g' => 'esa', 'Thhalv10029187m.g' => 'esa', 'TPR.G12971' => 'tpr', 'TPR.G29396' => 'tpr', 'TPR.G33376' => 'tpr', 'TPR.G35508' => 'tpr', 'TPR.G35516' => 'tpr', 'TPR.G37317' => 'tpr', 'TPR.G37389' => 'tpr', 'TPR.G37523' => 'tpr', 'TPR.G559' => 'tpr', 'TWI14G0070' => 'twi', 'TWI14G0729' => 'twi', 'TWI18G0596' => 'twi', 'TWI39G0780' => 'twi', 'TWI39G0850' => 'twi', 'TWI73G1052' => 'twi', 'unitig_52.g17485' => 'ugi', 'unitig_61.g26355' => 'ugi', 'vmacro01040' => 'vma', 'vmacro16731' => 'vma', 'vmacro18270' => 'vma', 'vmacro19142' => 'vma', 'vmacro19407' => 'vma', 'vmacro19408' => 'vma', 'vmacro21899' => 'vma', 'vmacro21900' => 'vma', 'vmacro21901' => 'vma', 'VMungo0251G0490' => 'vmu', 'VMungo0251G1748' => 'vmu', 'VMungo1309G0421' => 'vmu', 'Zm00001eb086500' => 'zma', 'Zm00001eb150680' => 'zma', 'Zm00001eb162330' => 'zma', 'Zm00001eb203130' => 'zma', 'Zm00001eb369480' => 'zma', 'Zm00001eb382340' => 'zma', 'Zm00001eb416360' => 'zma' ), 'gf_id' => 'HOM05D000902', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000902' ), 'data_identifier' => 'HOM05D000902', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000902', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '663', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02470' => 'bna', 'A01p16260' => 'bna', 'A02p01680' => 'bna', 'A03p16600' => 'bna', 'A03p55660' => 'bna', 'A03p64160' => 'bna', 'A03p64170' => 'bna', 'A08p31900' => 'bna', 'A09p59530' => 'bna', 'A10p08230' => 'bna', 'A10p25090' => 'bna', 'Aa31LG3G7100' => 'aar', 'Aa31LG3G7110' => 'aar', 'Aa31LG6G13160' => 'aar', 'Aa31LG7G10770' => 'aar', 'Aa31LG7G3830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2723' => 'aag', 'Actinidia08045' => 'ach', 'Actinidia08888' => 'ach', 'Actinidia18333' => 'ach', 'Actinidia19334' => 'ach', 'Actinidia25552' => 'ach', 'Actinidia26089' => 'ach', 'Actinidia30615' => 'ach', 'Actinidia30616' => 'ach', 'Actinidia33083' => 'ach', 'Actinidia35762' => 'ach', 'Ah.02g110620' => 'amhyb', 'Ah.11g046390' => 'amhyb', 'AL1G31670' => 'aly', 'AL6G23730' => 'aly', 'AL7G14740' => 'aly', 'AL7G14750' => 'aly', 'AL7G14760' => 'aly', 'AL7G28220' => 'aly', 'AL8G24940' => 'aly', 'Aqoxy3G01665' => 'aox', 'Aqoxy3G02853' => 'aox', 'Aqoxy5G01513' => 'aox', 'Aqoxy5G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8SKA4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ75LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKDA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0LJZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7REX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZP4YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWX7I5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2QKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS0L9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPCD8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q161UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC7XCF' => 'arhy', 'AT1G19100' => 'ath', 'AT4G24970' => 'ath', 'AT4G36270' => 'ath', 'AT4G36280' => 'ath', 'AT4G36290' => 'ath', 'AT5G13130' => 'ath', 'AT5G50780' => 'ath', 'ATR0582G266' => 'atr', 'ATR0661G195' => 'atr', 'ATR1152G031' => 'atr', 'Atru.chr11.2382' => 'acertr', 'Atru.chr12.2337' => 'acertr', 'Atru.chr3.744' => 'acertr', 'Atru.chr6.1870' => 'acertr', 'Atru.chr9.2515' => 'acertr', 'AUR62004120' => 'cqu', 'AUR62005667' => 'cqu', 'AUR62007634' => 'cqu', 'AUR62008186' => 'cqu', 'AUR62008187' => 'cqu', 'AUR62008188' => 'cqu', 'AUR62027954' => 'cqu', 'AUR62028766' => 'cqu', 'AUR62028767' => 'cqu', 'AUR62028768' => 'cqu', 'AUR62028886' => 'cqu', 'AUR62029563' => 'cqu', 'AUR62038832' => 'cqu', 'BcaB01g04149' => 'bca', 'BcaB03g12940' => 'bca', 'BcaB03g13090' => 'bca', 'BcaB03g14466' => 'bca', 'BcaB05g24035' => 'bca', 'BcaC01g06050' => 'bca', 'BcaC04g19148' => 'bca', 'BcaC04g20761' => 'bca', 'BcaC06g32845' => 'bca', 'BcaC07g41274' => 'bca', 'BcaC09g50827' => 'bca', 'BcaNung00741' => 'bca', 'BcaNung00742' => 'bca', 'BcaNung01859' => 'bca', 'BcaNung03985' => 'bca', 'BcaNung03989' => 'bca', 'BcaNung05661' => 'bca', 'BolC1t00257H' => 'bol', 'BolC1t01956H' => 'bol', 'BolC2t06534H' => 'bol', 'BolC3t14334H' => 'bol', 'BolC5t30451H' => 'bol', 'BolC7t45880H' => 'bol', 'BolC7t46586H' => 'bol', 'BolC8t49301H' => 'bol', 'BolC8t51837H' => 'bol', 'BolC9t56822H' => 'bol', 'BolC9t59235H' => 'bol', 'BraA01t00234Z' => 'bra', 'BraA01t01563Z' => 'bra', 'BraA02t05147Z' => 'bra', 'BraA03t10947Z' => 'bra', 'BraA03t14633Z' => 'bra', 'BraA08t35112Z' => 'bra', 'BraA09t41330Z' => 'bra', 'BraA10t44570Z' => 'bra', 'C01p02670' => 'bna', 'C01p20260' => 'bna', 'C02p05890' => 'bna', 'C03p19530' => 'bna', 'C05p17470' => 'bna', 'C07p53900' => 'bna', 'C07p61630' => 'bna', 'C08p16800' => 'bna', 'C08p42810' => 'bna', 'C09p39480' => 'bna', 'C09p63980' => 'bna', 'CAN.G1001.7' => 'can', 'CAN.G1034.55' => 'can', 'CAN.G143.7' => 'can', 'CAN.G3340.1' => 'can', 'CAN.G358.19' => 'can', 'CAN.G373.2' => 'can', 'CAN.G674.16' => 'can', 'CAN.G674.17' => 'can', 'CAN.G674.18' => 'can', 'CAN.G732.2' => 'can', 'CAN.G732.3' => 'can', 'CAN.G993.39' => 'can', 'CANSAT01G2052' => 'cansat', 'CANSAT80G0070' => 'cansat', 'CANSAT80G0483' => 'cansat', 'CANSAT80G0625' => 'cansat', 'CARHR019690' => 'chi', 'CARHR080280' => 'chi', 'CARHR152750' => 'chi', 'CARHR152760' => 'chi', 'CARHR152770' => 'chi', 'CARHR200340' => 'chi', 'CARHR232370' => 'chi', 'CARHR244670' => 'chi', 'CARHR244680' => 'chi', 'CARHR257520' => 'chi', 'Carub.0001s1872' => 'cru', 'Carub.0006s1130' => 'cru', 'Carub.0007s0396' => 'cru', 'Carub.0007s0397' => 'cru', 'Carub.0007s1608' => 'cru', 'Carub.0008s1068' => 'cru', 'Carub.0008s1077' => 'cru', 'Ca_16158_v3' => 'car', 'Ca_17571_v3' => 'car', 'Ca_21936_v3' => 'car', 'Ca_22350_v3' => 'car', 'CBR_g22445' => 'cbr', 'CBR_g26290' => 'cbr', 'Cc04_g09610' => 'ccan', 'Cc04_g12280' => 'ccan', 'Cc07_g10230' => 'ccan', 'CDE02G0093' => 'cde', 'CDE02G0701' => 'cde', 'CDE04G1050' => 'cde', 'CDE05G1833' => 'cde', 'CDE05G3058' => 'cde', 'CDE05G3380' => 'cde', 'CDE06G0536' => 'cde', 'Cfa006923' => 'cfa', 'Cfa009402' => 'cfa', 'Cfa018751' => 'cfa', 'Cfa019164' => 'cfa', 'Cfa022935' => 'cfa', 'Ciclev10019081m.g' => 'ccl', 'Ciclev10025076m.g' => 'ccl', 'Ciclev10030712m.g' => 'ccl', 'Ciclev10033760m.g' => 'ccl', 'CiPaw.05G105600' => 'cil', 'CiPaw.08G136700' => 'cil', 'CiPaw.11G003900' => 'cil', 'CiPaw.11G023700' => 'cil', 'CiPaw.12G003700' => 'cil', 'ClCG06G017100' => 'cla', 'ClCG06G018110' => 'cla', 'ClCG07G008800' => 'cla', 'ClCG07G015330' => 'cla', 'COL.COLO4_13698' => 'col', 'COL.COLO4_16659' => 'col', 'COL.COLO4_21986' => 'col', 'COL.COLO4_24049' => 'col', 'COL.COLO4_29061' => 'col', 'COL.COLO4_29075' => 'col', 'COL.COLO4_30094' => 'col', 'Cpa.g.c33689' => 'cpa', 'Cpa.g.sc108.39' => 'cpa', 'Cpa.g.sc108.41' => 'cpa', 'Cpa.g.sc1163.1' => 'cpa', 'Cpa.g.sc4.155' => 'cpa', 'Cpa.g.sc6.194' => 'cpa', 'CsaV3_1G000340' => 'csa', 'CsaV3_1G001400' => 'csa', 'CsaV3_4G002220' => 'csa', 'CsaV3_4G005370' => 'csa', 'CSS0007487' => 'camsi', 'CSS0008066' => 'camsi', 'CSS0009120' => 'camsi', 'CSS0015512' => 'camsi', 'CSS0022409' => 'camsi', 'CSS0025358' => 'camsi', 'CSS0044547' => 'camsi', 'DCAR_013057' => 'dca', 'DCAR_015058' => 'dca', 'DCAR_016027' => 'dca', 'DCAR_017327' => 'dca', 'DCAR_020743' => 'dca', 'DCAR_026157' => 'dca', 'DCAR_032339' => 'dca', 'DCAR_032340' => 'dca', 'Dinv11200' => 'din', 'Dinv11201' => 'din', 'Dinv20631' => 'din', 'Dinv23182' => 'din', 'Dinv33466' => 'din', 'Dinv33583' => 'din', 'Dinv38565' => 'din', 'Duzib068G0200' => 'dzi', 'Duzib147G0132' => 'dzi', 'Duzib147G0635' => 'dzi', 'Duzib205G1670' => 'dzi', 'Duzib251G0606' => 'dzi', 'ECA232G3336' => 'eca', 'ECA232G3763' => 'eca', 'ECA232G4845' => 'eca', 'ECA234G1607' => 'eca', 'ECA246G0932' => 'eca', 'ECA247G0781' => 'eca', 'ECA247G1932' => 'eca', 'ECA247G2079' => 'eca', 'ECA247G3338' => 'eca', 'ECA247G4115' => 'eca', 'EL10Ac3g06552' => 'bvu', 'EL10Ac5g10721' => 'bvu', 'EL10Ac5g10722' => 'bvu', 'EL10Ac5g10723' => 'bvu', 'EL10Ac5g11361' => 'bvu', 'EL10Ac6g13553' => 'bvu', 'EL10As8g23872' => 'bvu', 'Eucgr.B00250' => 'egr', 'Eucgr.B00251' => 'egr', 'Eucgr.B03533' => 'egr', 'Eucgr.I02381' => 'egr', 'Eucgr.K02700' => 'egr', 'FAN02G0174' => 'fan', 'FAN02G3146' => 'fan', 'FAN04G1672' => 'fan', 'FAN04G2273' => 'fan', 'FAN05G2791' => 'fan', 'FAN05G4035' => 'fan', 'FAN07G0834' => 'fan', 'FAN08G1198' => 'fan', 'FAN09G4182' => 'fan', 'FAN12G0496' => 'fan', 'FAN13G1027' => 'fan', 'FAN13G2951' => 'fan', 'FAN14G0705' => 'fan', 'FAN14G0720' => 'fan', 'FAN17G0201' => 'fan', 'FAN17G2665' => 'fan', 'FAN18G1456' => 'fan', 'FAN18G1525' => 'fan', 'FAN18G3500' => 'fan', 'FAN28G2670' => 'fan', 'FvH4_1g12391' => 'fve', 'FvH4_4g23220' => 'fve', 'FvH4_5g08810' => 'fve', 'FvH4_5g28960' => 'fve', 'FvH4_6g42820' => 'fve', 'FvH4_6g51110' => 'fve', 'Glyma.02G051802' => 'gma', 'Glyma.04G185300' => 'gma', 'Glyma.05G202900' => 'gma', 'Glyma.08G010300' => 'gma', 'Glyma.16G131900' => 'gma', 'Glyma.17G087900' => 'gma', 'Gohir.A07G048600' => 'ghi', 'Gohir.A11G179000' => 'ghi', 'Gohir.A12G140900' => 'ghi', 'Gohir.A12G140950' => 'ghi', 'Gohir.A12G191700' => 'ghi', 'Gohir.A13G086300' => 'ghi', 'Gohir.D07G052900' => 'ghi', 'Gohir.D11G186600' => 'ghi', 'Gohir.D12G145575' => 'ghi', 'Gohir.D12G145650' => 'ghi', 'Gohir.D12G145725' => 'ghi', 'Gohir.D12G194050' => 'ghi', 'Gohir.D13G091800' => 'ghi', 'Gorai.001G055900' => 'gra', 'Gorai.007G198400' => 'gra', 'Gorai.008G157000' => 'gra', 'Gorai.008G157100' => 'gra', 'Gorai.008G208700' => 'gra', 'Gorai.010G138700' => 'gra', 'GSVIVG01000977001' => 'vvi', 'GSVIVG01007708001' => 'vvi', 'GSVIVG01008587001' => 'vvi', 'GSVIVG01018849001' => 'vvi', 'GSVIVG01032432001' => 'vvi', 'HanXRQChr02g0034131' => 'han', 'HanXRQChr02g0035981' => 'han', 'HanXRQChr02g0035991' => 'han', 'HanXRQChr05g0155611' => 'han', 'HanXRQChr05g0155621' => 'han', 'HanXRQChr08g0236501' => 'han', 'HanXRQChr09g0261321' => 'han', 'HanXRQChr09g0272081' => 'han', 'HanXRQChr10g0310741' => 'han', 'HanXRQChr11g0325591' => 'han', 'HanXRQChr12g0385691' => 'han', 'HanXRQChr13g0387801' => 'han', 'HanXRQChr15g0463011' => 'han', 'Haze_03826' => 'cav', 'Haze_03827' => 'cav', 'Haze_07183' => 'cav', 'Haze_07537' => 'cav', 'Haze_07539' => 'cav', 'Haze_12461' => 'cav', 'Haze_16115' => 'cav', 'Haze_16808' => 'cav', 'Haze_18531' => 'cav', 'Hma1.2p1_0046F.1_g026700' => 'hma', 'Hma1.2p1_0046F.1_g026710' => 'hma', 'Hma1.2p1_0168F.1_g074340' => 'hma', 'Hma1.2p1_0266F.1_g107030' => 'hma', 'Hma1.2p1_0266F.1_g107060' => 'hma', 'Hma1.2p1_0275F.1_g110510' => 'hma', 'Hma1.2p1_0592F.1_g185490' => 'hma', 'Hma1.2p1_0592F.1_g185500' => 'hma', 'Hma1.2p1_0592F.1_g185510' => 'hma', 'Hma1.2p1_0592F.1_g185520' => 'hma', 'Hma1.2p1_0592F.1_g185530' => 'hma', 'Hma1.2p1_0818F.1_g223450' => 'hma', 'HPP92_009708' => 'vpl', 'HPP92_009793' => 'vpl', 'HPP92_009796' => 'vpl', 'HPP92_009797' => 'vpl', 'HPP92_014940' => 'vpl', 'HPP92_014988' => 'vpl', 'Hund02463' => 'sun', 'Hund02760' => 'sun', 'Hund05071' => 'sun', 'Hund10108' => 'sun', 'Hund11204' => 'sun', 'Hund14016' => 'sun', 'Hund16464' => 'sun', 'Lalb_Chr09g0333391' => 'lal', 'Lalb_Chr11g0070461' => 'lal', 'Lalb_Chr12g0201671' => 'lal', 'Lalb_Chr13g0297161' => 'lal', 'Lj1g0002823' => 'lja', 'Lj3C1074T6' => 'lonja', 'Lj4A212T28' => 'lonja', 'Lj4g0005516' => 'lja', 'Lj4g0013705' => 'lja', 'Lj4g0027865' => 'lja', 'Lj5C92G16' => 'lonja', 'Lj5C92T12' => 'lonja', 'Lj7C596T3' => 'lonja', 'Lj9A446G59' => 'lonja', 'Lj9A482G21' => 'lonja', 'Lsat_1_v5_gn_1_28261' => 'lsa', 'Lsat_1_v5_gn_1_28281' => 'lsa', 'Lsat_1_v5_gn_1_32721' => 'lsa', 'Lsat_1_v5_gn_4_151760' => 'lsa', 'Lsat_1_v5_gn_4_2120' => 'lsa', 'Lsat_1_v5_gn_4_75761' => 'lsa', 'Lsat_1_v5_gn_5_10920' => 'lsa', 'Manes.02G099900' => 'mes', 'Manes.11G096200' => 'mes', 'Manes.12G007200' => 'mes', 'Manes.14G048300' => 'mes', 'Manes.17G114700' => 'mes', 'Mapoly0002s0070' => 'mpo', 'Mapoly0029s0099' => 'mpo', 'MBI07_g24742_MAGBIO' => 'mbi', 'MBI10_g27988_MAGBIO' => 'mbi', 'MBI11_g13057_MAGBIO' => 'mbi', 'MD02G1137200' => 'mdo', 'MD06G1137200' => 'mdo', 'MD07G1122300' => 'mdo', 'MD09G1078200' => 'mdo', 'MD13G1123700' => 'mdo', 'MD14G1151900' => 'mdo', 'MD17G1030900' => 'mdo', 'MD17G1068200' => 'mdo', 'MD17G1068600' => 'mdo', 'Medtr3g077540' => 'mtr', 'Medtr4g105530' => 'mtr', 'Medtr8g076580' => 'mtr', 'Medtr8g076590' => 'mtr', 'Medtr8g096410' => 'mtr', 'MELO3C016411.2' => 'cme', 'MELO3C017780.2' => 'cme', 'MELO3C022560.2' => 'cme', 'MELO3C026187.2' => 'cme', 'MELO3C026286.2' => 'cme', 'MELO3C032854.2' => 'cme', 'Migut.H02495' => 'egut', 'Migut.I00561' => 'egut', 'Migut.K01015' => 'egut', 'Migut.K01016' => 'egut', 'Migut.L00743' => 'egut', 'Migut.L00744' => 'egut', 'Migut.L00746' => 'egut', 'Migut.L00798' => 'egut', 'Migut.L00799' => 'egut', 'Migut.N02096' => 'egut', 'MSTRG.11259' => 'ama', 'MSTRG.23142' => 'ama', 'MSTRG.2499' => 'ama', 'Nitab4.5_0000003g0730' => 'nta', 'Nitab4.5_0000137g0020' => 'nta', 'Nitab4.5_0000721g0210' => 'nta', 'Nitab4.5_0000723g0050' => 'nta', 'Nitab4.5_0000913g0070' => 'nta', 'Nitab4.5_0001332g0040' => 'nta', 'Nitab4.5_0001771g0050' => 'nta', 'Nitab4.5_0001918g0050' => 'nta', 'Nitab4.5_0002686g0030' => 'nta', 'Nitab4.5_0003156g0020' => 'nta', 'Nitab4.5_0003383g0040' => 'nta', 'Nitab4.5_0003918g0010' => 'nta', 'Nitab4.5_0006760g0010' => 'nta', 'Nn1g05981' => 'nnu', 'Nn1g06288' => 'nnu', 'Nn3g16371' => 'nnu', 'Nn3g16786' => 'nnu', 'Nn4g22232' => 'nnu', 'Oeu005144.1' => 'oeu', 'Oeu005145.1' => 'oeu', 'Oeu011348.1' => 'oeu', 'Oeu016415.1' => 'oeu', 'Oeu023501.1' => 'oeu', 'Oeu044473.1' => 'oeu', 'Oeu048892.2' => 'oeu', 'Os01g0549200' => 'osa', 'Os02g0469300' => 'osa', 'Os04g0311100' => 'osa', 'Os06g0474900' => 'osa', 'Os10g0181700' => 'osa', 'Os11g0454800' => 'osa', 'Peaxi162Scf00037g00714' => 'pax', 'Peaxi162Scf00084g01217' => 'pax', 'Peaxi162Scf00257g00217' => 'pax', 'Peaxi162Scf00516g00215' => 'pax', 'Peaxi162Scf00689g00123' => 'pax', 'PGR044G2719' => 'pgr', 'PGR083G1360' => 'pgr', 'PGR102G2849' => 'pgr', 'PGR119G2534' => 'pgr', 'PGSC0003DMG400003538' => 'stu', 'PGSC0003DMG400028138' => 'stu', 'PGSC0003DMG400031732' => 'stu', 'PGSC0003DMG400038165' => 'stu', 'Phvul.002G284600' => 'pvu', 'Phvul.003G258200' => 'pvu', 'Phvul.009G176500' => 'pvu', 'Potri.003G167201' => 'ptr', 'Potri.005G118400' => 'ptr', 'Potri.012G089000' => 'ptr', 'Potri.012G102800' => 'ptr', 'Potri.015G079400' => 'ptr', 'Potri.015G100900' => 'ptr', 'Pp3c14_9810' => 'ppa', 'Pp3c15_10450' => 'ppa', 'Pp3c20_19150' => 'ppa', 'Pp3c23_12740' => 'ppa', 'Pp3c23_6310' => 'ppa', 'Pp3c24_3720' => 'ppa', 'Pp3c27_2580' => 'ppa', 'Pp3c9_8990' => 'ppa', 'PRCOL_00002854' => 'pco', 'Prupe.1G221200' => 'ppe', 'Prupe.3G289000' => 'ppe', 'Prupe.5G147000' => 'ppe', 'Prupe.6G157300' => 'ppe', 'Prupe.7G163400' => 'ppe', 'Psat0s2177g0040' => 'psa', 'Psat3g174760' => 'psa', 'Psat3g192160' => 'psa', 'Psat4g058520' => 'psa', 'Psat4g096840' => 'psa', 'Psat7g037320' => 'psa', 'PSO017G1274' => 'pso', 'PSO017G5166' => 'pso', 'PSO063G4558' => 'pso', 'PSO170G4458' => 'pso', 'PSO170G5005' => 'pso', 'PSO210G6156' => 'pso', 'PSO210G6635' => 'pso', 'PSO210G7397' => 'pso', 'PSO210G7700' => 'pso', 'PSO455G0035' => 'pso', 'PSO455G0180' => 'pso', 'PSO478G4515' => 'pso', 'PSO832G1305' => 'pso', 'PSO832G3489' => 'pso', 'QL02p075247' => 'qlo', 'QL03p051148' => 'qlo', 'QL05p010313' => 'qlo', 'QL06p034627' => 'qlo', 'QL10p001889' => 'qlo', 'QL10p010846' => 'qlo', 'RcHm_v2.0_Chr1g0350621' => 'rch', 'RcHm_v2.0_Chr1g0350641' => 'rch', 'RcHm_v2.0_Chr2g0092891' => 'rch', 'RcHm_v2.0_Chr2g0100251' => 'rch', 'RcHm_v2.0_Chr2g0158661' => 'rch', 'RcHm_v2.0_Chr2g0172741' => 'rch', 'RcHm_v2.0_Chr4g0429571' => 'rch', 'RcHm_v2.0_Chr5g0042471' => 'rch', 'RcHm_v2.0_Chr7g0189451' => 'rch', 'Rhsim08G0052000' => 'rsi', 'Rhsim08G0174400' => 'rsi', 'Rhsim08G0193200' => 'rsi', 'Rhsim10G0214800' => 'rsi', 'Rhsim10G0214900' => 'rsi', 'Rhsim10G0215000' => 'rsi', 'Rhsim12G0022900' => 'rsi', 'Rhsim12G0177500' => 'rsi', 'Rhsim12G0177700' => 'rsi', 'Sabra03G0122600' => 'sbr', 'Sabra05G0097400' => 'sbr', 'Sabra12G0064100' => 'sbr', 'Sabra15G0121300' => 'sbr', 'SalBow2G0642' => 'sbo', 'SalBow5G2667' => 'sbo', 'SalBow5G4873' => 'sbo', 'SalBow8G2395' => 'sbo', 'Sc03g0003290' => 'sci', 'Sc10g0010130' => 'sci', 'Sc22g0003650' => 'sci', 'Sed0001603' => 'sed', 'Sed0004259' => 'sed', 'Sed0006789' => 'sed', 'Sed0011838' => 'sed', 'Sed0012964' => 'sed', 'Sed0016383' => 'sed', 'Sed0019010' => 'sed', 'Sed0020188' => 'sed', 'SEGI_04702' => 'sgi', 'SEGI_17231' => 'sgi', 'SEGI_18877' => 'sgi', 'SEGI_25196' => 'sgi', 'SEGI_25515' => 'sgi', 'SEGI_28445' => 'sgi', 'SEGI_37452' => 'sgi', 'SGA_v2.0_scaffold188G40336' => 'sas', 'SGA_v2.0_scaffold228G43247' => 'sas', 'SGA_v2.0_scaffold280G46853' => 'sas', 'SGA_v2.0_scaffold34G13808' => 'sas', 'SGA_v2.0_scaffold40G15576' => 'sas', 'SGA_v2.0_scaffold611G53188' => 'sas', 'SGA_v2.0_scaffold78G25461' => 'sas', 'SGA_v2.0_scaffold90G27888' => 'sas', 'SHI08601' => 'shi', 'SHI08606' => 'shi', 'SHI17117' => 'shi', 'SHI17119' => 'shi', 'SMO118G0201' => 'smo', 'SMO169G0247' => 'smo', 'SMO176G0006' => 'smo', 'SMO176G0015' => 'smo', 'SMO202G0006' => 'smo', 'SMO240G0050' => 'smo', 'SMO286G0009' => 'smo', 'SMO338G0033' => 'smo', 'SMO356G0533' => 'smo', 'SMO364G0382' => 'smo', 'SMO367G0166' => 'smo', 'SMO367G1098' => 'smo', 'Solyc01g009920.3' => 'sly', 'Solyc01g099300.3' => 'sly', 'Solyc02g084700.3' => 'sly', 'Solyc03g097520.3' => 'sly', 'Solyc06g071580.3' => 'sly', 'Solyc10g081760.3' => 'sly', 'Sopen01g005480' => 'spe', 'Sopen01g042850' => 'spe', 'Sopen02g029370' => 'spe', 'Sopen03g028280' => 'spe', 'Sopen06g027870' => 'spe', 'Sopen10g032270' => 'spe', 'Sp5g18180' => 'spa', 'Sp6g12880' => 'spa', 'Sp6g30850' => 'spa', 'Sp7g22960' => 'spa', 'Sp7g34010' => 'spa', 'SpUn1326_0010' => 'spa', 'TAR371G0242' => 'tar', 'TAR622G0638' => 'tar', 'TAR628G1548' => 'tar', 'TAR629G1079' => 'tar', 'TAR629G3413' => 'tar', 'THA.LOC104804249' => 'tha', 'THA.LOC104808315' => 'tha', 'THA.LOC104809238' => 'tha', 'THA.LOC104825484' => 'tha', 'Thecc.01G025500' => 'tca', 'Thecc.03G015800' => 'tca', 'Thecc.03G018000' => 'tca', 'Thecc.03G134800' => 'tca', 'Thecc.04G014700' => 'tca', 'Thhalv10006991m.g' => 'esa', 'Thhalv10012707m.g' => 'esa', 'Thhalv10015739m.g' => 'esa', 'Thhalv10024553m.g' => 'esa', 'Thhalv10024673m.g' => 'esa', 'Thhalv10029187m.g' => 'esa', 'TPR.G12971' => 'tpr', 'TPR.G29396' => 'tpr', 'TPR.G33376' => 'tpr', 'TPR.G35508' => 'tpr', 'TPR.G35516' => 'tpr', 'TPR.G37317' => 'tpr', 'TPR.G37389' => 'tpr', 'TPR.G37523' => 'tpr', 'TPR.G559' => 'tpr', 'TWI14G0070' => 'twi', 'TWI14G0729' => 'twi', 'TWI18G0596' => 'twi', 'TWI39G0780' => 'twi', 'TWI39G0850' => 'twi', 'TWI73G1052' => 'twi', 'unitig_52.g17485' => 'ugi', 'unitig_61.g26355' => 'ugi', 'vmacro01040' => 'vma', 'vmacro16731' => 'vma', 'vmacro18270' => 'vma', 'vmacro19142' => 'vma', 'vmacro19407' => 'vma', 'vmacro19408' => 'vma', 'vmacro21899' => 'vma', 'vmacro21900' => 'vma', 'vmacro21901' => 'vma', 'VMungo0251G0490' => 'vmu', 'VMungo0251G1748' => 'vmu', 'VMungo1309G0421' => 'vmu', 'Zm00001eb086500' => 'zma', 'Zm00001eb150680' => 'zma', 'Zm00001eb162330' => 'zma', 'Zm00001eb203130' => 'zma', 'Zm00001eb369480' => 'zma', 'Zm00001eb382340' => 'zma', 'Zm00001eb416360' => 'zma' ) $gf_id = 'HOM05D000902' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000902' ) $data_identifier = 'HOM05D000902' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 13, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 10, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 6, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 9, 'hma' => (int) 12, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 4, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 6, 'ppa' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 6, 'rch' => (int) 9, 'rsi' => (int) 9, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 12, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 3, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416360' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000902', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '663', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02470' => 'bna', 'A01p16260' => 'bna', 'A02p01680' => 'bna', 'A03p16600' => 'bna', 'A03p55660' => 'bna', 'A03p64160' => 'bna', 'A03p64170' => 'bna', 'A08p31900' => 'bna', 'A09p59530' => 'bna', 'A10p08230' => 'bna', 'A10p25090' => 'bna', 'Aa31LG3G7100' => 'aar', 'Aa31LG3G7110' => 'aar', 'Aa31LG6G13160' => 'aar', 'Aa31LG7G10770' => 'aar', 'Aa31LG7G3830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2723' => 'aag', 'Actinidia08045' => 'ach', 'Actinidia08888' => 'ach', 'Actinidia18333' => 'ach', 'Actinidia19334' => 'ach', 'Actinidia25552' => 'ach', 'Actinidia26089' => 'ach', 'Actinidia30615' => 'ach', 'Actinidia30616' => 'ach', 'Actinidia33083' => 'ach', 'Actinidia35762' => 'ach', 'Ah.02g110620' => 'amhyb', 'Ah.11g046390' => 'amhyb', 'AL1G31670' => 'aly', 'AL6G23730' => 'aly', 'AL7G14740' => 'aly', 'AL7G14750' => 'aly', 'AL7G14760' => 'aly', 'AL7G28220' => 'aly', 'AL8G24940' => 'aly', 'Aqoxy3G01665' => 'aox', 'Aqoxy3G02853' => 'aox', 'Aqoxy5G01513' => 'aox', 'Aqoxy5G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8SKA4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ75LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKDA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0LJZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7REX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZP4YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWX7I5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2QKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS0L9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPCD8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q161UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC7XCF' => 'arhy', 'AT1G19100' => 'ath', 'AT4G24970' => 'ath', 'AT4G36270' => 'ath', 'AT4G36280' => 'ath', 'AT4G36290' => 'ath', 'AT5G13130' => 'ath', 'AT5G50780' => 'ath', 'ATR0582G266' => 'atr', 'ATR0661G195' => 'atr', 'ATR1152G031' => 'atr', 'Atru.chr11.2382' => 'acertr', 'Atru.chr12.2337' => 'acertr', 'Atru.chr3.744' => 'acertr', 'Atru.chr6.1870' => 'acertr', 'Atru.chr9.2515' => 'acertr', 'AUR62004120' => 'cqu', 'AUR62005667' => 'cqu', 'AUR62007634' => 'cqu', 'AUR62008186' => 'cqu', 'AUR62008187' => 'cqu', 'AUR62008188' => 'cqu', 'AUR62027954' => 'cqu', 'AUR62028766' => 'cqu', 'AUR62028767' => 'cqu', 'AUR62028768' => 'cqu', 'AUR62028886' => 'cqu', 'AUR62029563' => 'cqu', 'AUR62038832' => 'cqu', 'BcaB01g04149' => 'bca', 'BcaB03g12940' => 'bca', 'BcaB03g13090' => 'bca', 'BcaB03g14466' => 'bca', 'BcaB05g24035' => 'bca', 'BcaC01g06050' => 'bca', 'BcaC04g19148' => 'bca', 'BcaC04g20761' => 'bca', 'BcaC06g32845' => 'bca', 'BcaC07g41274' => 'bca', 'BcaC09g50827' => 'bca', 'BcaNung00741' => 'bca', 'BcaNung00742' => 'bca', 'BcaNung01859' => 'bca', 'BcaNung03985' => 'bca', 'BcaNung03989' => 'bca', 'BcaNung05661' => 'bca', 'BolC1t00257H' => 'bol', 'BolC1t01956H' => 'bol', 'BolC2t06534H' => 'bol', 'BolC3t14334H' => 'bol', 'BolC5t30451H' => 'bol', 'BolC7t45880H' => 'bol', 'BolC7t46586H' => 'bol', 'BolC8t49301H' => 'bol', 'BolC8t51837H' => 'bol', 'BolC9t56822H' => 'bol', 'BolC9t59235H' => 'bol', 'BraA01t00234Z' => 'bra', 'BraA01t01563Z' => 'bra', 'BraA02t05147Z' => 'bra', 'BraA03t10947Z' => 'bra', 'BraA03t14633Z' => 'bra', 'BraA08t35112Z' => 'bra', 'BraA09t41330Z' => 'bra', 'BraA10t44570Z' => 'bra', 'C01p02670' => 'bna', 'C01p20260' => 'bna', 'C02p05890' => 'bna', 'C03p19530' => 'bna', 'C05p17470' => 'bna', 'C07p53900' => 'bna', 'C07p61630' => 'bna', 'C08p16800' => 'bna', 'C08p42810' => 'bna', 'C09p39480' => 'bna', 'C09p63980' => 'bna', 'CAN.G1001.7' => 'can', 'CAN.G1034.55' => 'can', 'CAN.G143.7' => 'can', 'CAN.G3340.1' => 'can', 'CAN.G358.19' => 'can', 'CAN.G373.2' => 'can', 'CAN.G674.16' => 'can', 'CAN.G674.17' => 'can', 'CAN.G674.18' => 'can', 'CAN.G732.2' => 'can', 'CAN.G732.3' => 'can', 'CAN.G993.39' => 'can', 'CANSAT01G2052' => 'cansat', 'CANSAT80G0070' => 'cansat', 'CANSAT80G0483' => 'cansat', 'CANSAT80G0625' => 'cansat', 'CARHR019690' => 'chi', 'CARHR080280' => 'chi', 'CARHR152750' => 'chi', 'CARHR152760' => 'chi', 'CARHR152770' => 'chi', 'CARHR200340' => 'chi', 'CARHR232370' => 'chi', 'CARHR244670' => 'chi', 'CARHR244680' => 'chi', 'CARHR257520' => 'chi', 'Carub.0001s1872' => 'cru', 'Carub.0006s1130' => 'cru', 'Carub.0007s0396' => 'cru', 'Carub.0007s0397' => 'cru', 'Carub.0007s1608' => 'cru', 'Carub.0008s1068' => 'cru', 'Carub.0008s1077' => 'cru', 'Ca_16158_v3' => 'car', 'Ca_17571_v3' => 'car', 'Ca_21936_v3' => 'car', 'Ca_22350_v3' => 'car', 'CBR_g22445' => 'cbr', 'CBR_g26290' => 'cbr', 'Cc04_g09610' => 'ccan', 'Cc04_g12280' => 'ccan', 'Cc07_g10230' => 'ccan', 'CDE02G0093' => 'cde', 'CDE02G0701' => 'cde', 'CDE04G1050' => 'cde', 'CDE05G1833' => 'cde', 'CDE05G3058' => 'cde', 'CDE05G3380' => 'cde', 'CDE06G0536' => 'cde', 'Cfa006923' => 'cfa', 'Cfa009402' => 'cfa', 'Cfa018751' => 'cfa', 'Cfa019164' => 'cfa', 'Cfa022935' => 'cfa', 'Ciclev10019081m.g' => 'ccl', 'Ciclev10025076m.g' => 'ccl', 'Ciclev10030712m.g' => 'ccl', 'Ciclev10033760m.g' => 'ccl', 'CiPaw.05G105600' => 'cil', 'CiPaw.08G136700' => 'cil', 'CiPaw.11G003900' => 'cil', 'CiPaw.11G023700' => 'cil', 'CiPaw.12G003700' => 'cil', 'ClCG06G017100' => 'cla', 'ClCG06G018110' => 'cla', 'ClCG07G008800' => 'cla', 'ClCG07G015330' => 'cla', 'COL.COLO4_13698' => 'col', 'COL.COLO4_16659' => 'col', 'COL.COLO4_21986' => 'col', 'COL.COLO4_24049' => 'col', 'COL.COLO4_29061' => 'col', 'COL.COLO4_29075' => 'col', 'COL.COLO4_30094' => 'col', 'Cpa.g.c33689' => 'cpa', 'Cpa.g.sc108.39' => 'cpa', 'Cpa.g.sc108.41' => 'cpa', 'Cpa.g.sc1163.1' => 'cpa', 'Cpa.g.sc4.155' => 'cpa', 'Cpa.g.sc6.194' => 'cpa', 'CsaV3_1G000340' => 'csa', 'CsaV3_1G001400' => 'csa', 'CsaV3_4G002220' => 'csa', 'CsaV3_4G005370' => 'csa', 'CSS0007487' => 'camsi', 'CSS0008066' => 'camsi', 'CSS0009120' => 'camsi', 'CSS0015512' => 'camsi', 'CSS0022409' => 'camsi', 'CSS0025358' => 'camsi', 'CSS0044547' => 'camsi', 'DCAR_013057' => 'dca', 'DCAR_015058' => 'dca', 'DCAR_016027' => 'dca', 'DCAR_017327' => 'dca', 'DCAR_020743' => 'dca', 'DCAR_026157' => 'dca', 'DCAR_032339' => 'dca', 'DCAR_032340' => 'dca', 'Dinv11200' => 'din', 'Dinv11201' => 'din', 'Dinv20631' => 'din', 'Dinv23182' => 'din', 'Dinv33466' => 'din', 'Dinv33583' => 'din', 'Dinv38565' => 'din', 'Duzib068G0200' => 'dzi', 'Duzib147G0132' => 'dzi', 'Duzib147G0635' => 'dzi', 'Duzib205G1670' => 'dzi', 'Duzib251G0606' => 'dzi', 'ECA232G3336' => 'eca', 'ECA232G3763' => 'eca', 'ECA232G4845' => 'eca', 'ECA234G1607' => 'eca', 'ECA246G0932' => 'eca', 'ECA247G0781' => 'eca', 'ECA247G1932' => 'eca', 'ECA247G2079' => 'eca', 'ECA247G3338' => 'eca', 'ECA247G4115' => 'eca', 'EL10Ac3g06552' => 'bvu', 'EL10Ac5g10721' => 'bvu', 'EL10Ac5g10722' => 'bvu', 'EL10Ac5g10723' => 'bvu', 'EL10Ac5g11361' => 'bvu', 'EL10Ac6g13553' => 'bvu', 'EL10As8g23872' => 'bvu', 'Eucgr.B00250' => 'egr', 'Eucgr.B00251' => 'egr', 'Eucgr.B03533' => 'egr', 'Eucgr.I02381' => 'egr', 'Eucgr.K02700' => 'egr', 'FAN02G0174' => 'fan', 'FAN02G3146' => 'fan', 'FAN04G1672' => 'fan', 'FAN04G2273' => 'fan', 'FAN05G2791' => 'fan', 'FAN05G4035' => 'fan', 'FAN07G0834' => 'fan', 'FAN08G1198' => 'fan', 'FAN09G4182' => 'fan', 'FAN12G0496' => 'fan', 'FAN13G1027' => 'fan', 'FAN13G2951' => 'fan', 'FAN14G0705' => 'fan', 'FAN14G0720' => 'fan', 'FAN17G0201' => 'fan', 'FAN17G2665' => 'fan', 'FAN18G1456' => 'fan', 'FAN18G1525' => 'fan', 'FAN18G3500' => 'fan', 'FAN28G2670' => 'fan', 'FvH4_1g12391' => 'fve', 'FvH4_4g23220' => 'fve', 'FvH4_5g08810' => 'fve', 'FvH4_5g28960' => 'fve', 'FvH4_6g42820' => 'fve', 'FvH4_6g51110' => 'fve', 'Glyma.02G051802' => 'gma', 'Glyma.04G185300' => 'gma', 'Glyma.05G202900' => 'gma', 'Glyma.08G010300' => 'gma', 'Glyma.16G131900' => 'gma', 'Glyma.17G087900' => 'gma', 'Gohir.A07G048600' => 'ghi', 'Gohir.A11G179000' => 'ghi', 'Gohir.A12G140900' => 'ghi', 'Gohir.A12G140950' => 'ghi', 'Gohir.A12G191700' => 'ghi', 'Gohir.A13G086300' => 'ghi', 'Gohir.D07G052900' => 'ghi', 'Gohir.D11G186600' => 'ghi', 'Gohir.D12G145575' => 'ghi', 'Gohir.D12G145650' => 'ghi', 'Gohir.D12G145725' => 'ghi', 'Gohir.D12G194050' => 'ghi', 'Gohir.D13G091800' => 'ghi', 'Gorai.001G055900' => 'gra', 'Gorai.007G198400' => 'gra', 'Gorai.008G157000' => 'gra', 'Gorai.008G157100' => 'gra', 'Gorai.008G208700' => 'gra', 'Gorai.010G138700' => 'gra', 'GSVIVG01000977001' => 'vvi', 'GSVIVG01007708001' => 'vvi', 'GSVIVG01008587001' => 'vvi', 'GSVIVG01018849001' => 'vvi', 'GSVIVG01032432001' => 'vvi', 'HanXRQChr02g0034131' => 'han', 'HanXRQChr02g0035981' => 'han', 'HanXRQChr02g0035991' => 'han', 'HanXRQChr05g0155611' => 'han', 'HanXRQChr05g0155621' => 'han', 'HanXRQChr08g0236501' => 'han', 'HanXRQChr09g0261321' => 'han', 'HanXRQChr09g0272081' => 'han', 'HanXRQChr10g0310741' => 'han', 'HanXRQChr11g0325591' => 'han', 'HanXRQChr12g0385691' => 'han', 'HanXRQChr13g0387801' => 'han', 'HanXRQChr15g0463011' => 'han', 'Haze_03826' => 'cav', 'Haze_03827' => 'cav', 'Haze_07183' => 'cav', 'Haze_07537' => 'cav', 'Haze_07539' => 'cav', 'Haze_12461' => 'cav', 'Haze_16115' => 'cav', 'Haze_16808' => 'cav', 'Haze_18531' => 'cav', 'Hma1.2p1_0046F.1_g026700' => 'hma', 'Hma1.2p1_0046F.1_g026710' => 'hma', 'Hma1.2p1_0168F.1_g074340' => 'hma', 'Hma1.2p1_0266F.1_g107030' => 'hma', 'Hma1.2p1_0266F.1_g107060' => 'hma', 'Hma1.2p1_0275F.1_g110510' => 'hma', 'Hma1.2p1_0592F.1_g185490' => 'hma', 'Hma1.2p1_0592F.1_g185500' => 'hma', 'Hma1.2p1_0592F.1_g185510' => 'hma', 'Hma1.2p1_0592F.1_g185520' => 'hma', 'Hma1.2p1_0592F.1_g185530' => 'hma', 'Hma1.2p1_0818F.1_g223450' => 'hma', 'HPP92_009708' => 'vpl', 'HPP92_009793' => 'vpl', 'HPP92_009796' => 'vpl', 'HPP92_009797' => 'vpl', 'HPP92_014940' => 'vpl', 'HPP92_014988' => 'vpl', 'Hund02463' => 'sun', 'Hund02760' => 'sun', 'Hund05071' => 'sun', 'Hund10108' => 'sun', 'Hund11204' => 'sun', 'Hund14016' => 'sun', 'Hund16464' => 'sun', 'Lalb_Chr09g0333391' => 'lal', 'Lalb_Chr11g0070461' => 'lal', 'Lalb_Chr12g0201671' => 'lal', 'Lalb_Chr13g0297161' => 'lal', 'Lj1g0002823' => 'lja', 'Lj3C1074T6' => 'lonja', 'Lj4A212T28' => 'lonja', 'Lj4g0005516' => 'lja', 'Lj4g0013705' => 'lja', 'Lj4g0027865' => 'lja', 'Lj5C92G16' => 'lonja', 'Lj5C92T12' => 'lonja', 'Lj7C596T3' => 'lonja', 'Lj9A446G59' => 'lonja', 'Lj9A482G21' => 'lonja', 'Lsat_1_v5_gn_1_28261' => 'lsa', 'Lsat_1_v5_gn_1_28281' => 'lsa', 'Lsat_1_v5_gn_1_32721' => 'lsa', 'Lsat_1_v5_gn_4_151760' => 'lsa', 'Lsat_1_v5_gn_4_2120' => 'lsa', 'Lsat_1_v5_gn_4_75761' => 'lsa', 'Lsat_1_v5_gn_5_10920' => 'lsa', 'Manes.02G099900' => 'mes', 'Manes.11G096200' => 'mes', 'Manes.12G007200' => 'mes', 'Manes.14G048300' => 'mes', 'Manes.17G114700' => 'mes', 'Mapoly0002s0070' => 'mpo', 'Mapoly0029s0099' => 'mpo', 'MBI07_g24742_MAGBIO' => 'mbi', 'MBI10_g27988_MAGBIO' => 'mbi', 'MBI11_g13057_MAGBIO' => 'mbi', 'MD02G1137200' => 'mdo', 'MD06G1137200' => 'mdo', 'MD07G1122300' => 'mdo', 'MD09G1078200' => 'mdo', 'MD13G1123700' => 'mdo', 'MD14G1151900' => 'mdo', 'MD17G1030900' => 'mdo', 'MD17G1068200' => 'mdo', 'MD17G1068600' => 'mdo', 'Medtr3g077540' => 'mtr', 'Medtr4g105530' => 'mtr', 'Medtr8g076580' => 'mtr', 'Medtr8g076590' => 'mtr', 'Medtr8g096410' => 'mtr', 'MELO3C016411.2' => 'cme', 'MELO3C017780.2' => 'cme', 'MELO3C022560.2' => 'cme', 'MELO3C026187.2' => 'cme', 'MELO3C026286.2' => 'cme', 'MELO3C032854.2' => 'cme', 'Migut.H02495' => 'egut', 'Migut.I00561' => 'egut', 'Migut.K01015' => 'egut', 'Migut.K01016' => 'egut', 'Migut.L00743' => 'egut', 'Migut.L00744' => 'egut', 'Migut.L00746' => 'egut', 'Migut.L00798' => 'egut', 'Migut.L00799' => 'egut', 'Migut.N02096' => 'egut', 'MSTRG.11259' => 'ama', 'MSTRG.23142' => 'ama', 'MSTRG.2499' => 'ama', 'Nitab4.5_0000003g0730' => 'nta', 'Nitab4.5_0000137g0020' => 'nta', 'Nitab4.5_0000721g0210' => 'nta', 'Nitab4.5_0000723g0050' => 'nta', 'Nitab4.5_0000913g0070' => 'nta', 'Nitab4.5_0001332g0040' => 'nta', 'Nitab4.5_0001771g0050' => 'nta', 'Nitab4.5_0001918g0050' => 'nta', 'Nitab4.5_0002686g0030' => 'nta', 'Nitab4.5_0003156g0020' => 'nta', 'Nitab4.5_0003383g0040' => 'nta', 'Nitab4.5_0003918g0010' => 'nta', 'Nitab4.5_0006760g0010' => 'nta', 'Nn1g05981' => 'nnu', 'Nn1g06288' => 'nnu', 'Nn3g16371' => 'nnu', 'Nn3g16786' => 'nnu', 'Nn4g22232' => 'nnu', 'Oeu005144.1' => 'oeu', 'Oeu005145.1' => 'oeu', 'Oeu011348.1' => 'oeu', 'Oeu016415.1' => 'oeu', 'Oeu023501.1' => 'oeu', 'Oeu044473.1' => 'oeu', 'Oeu048892.2' => 'oeu', 'Os01g0549200' => 'osa', 'Os02g0469300' => 'osa', 'Os04g0311100' => 'osa', 'Os06g0474900' => 'osa', 'Os10g0181700' => 'osa', 'Os11g0454800' => 'osa', 'Peaxi162Scf00037g00714' => 'pax', 'Peaxi162Scf00084g01217' => 'pax', 'Peaxi162Scf00257g00217' => 'pax', 'Peaxi162Scf00516g00215' => 'pax', 'Peaxi162Scf00689g00123' => 'pax', 'PGR044G2719' => 'pgr', 'PGR083G1360' => 'pgr', 'PGR102G2849' => 'pgr', 'PGR119G2534' => 'pgr', 'PGSC0003DMG400003538' => 'stu', 'PGSC0003DMG400028138' => 'stu', 'PGSC0003DMG400031732' => 'stu', 'PGSC0003DMG400038165' => 'stu', 'Phvul.002G284600' => 'pvu', 'Phvul.003G258200' => 'pvu', 'Phvul.009G176500' => 'pvu', 'Potri.003G167201' => 'ptr', 'Potri.005G118400' => 'ptr', 'Potri.012G089000' => 'ptr', 'Potri.012G102800' => 'ptr', 'Potri.015G079400' => 'ptr', 'Potri.015G100900' => 'ptr', 'Pp3c14_9810' => 'ppa', 'Pp3c15_10450' => 'ppa', 'Pp3c20_19150' => 'ppa', 'Pp3c23_12740' => 'ppa', 'Pp3c23_6310' => 'ppa', 'Pp3c24_3720' => 'ppa', 'Pp3c27_2580' => 'ppa', 'Pp3c9_8990' => 'ppa', 'PRCOL_00002854' => 'pco', 'Prupe.1G221200' => 'ppe', 'Prupe.3G289000' => 'ppe', 'Prupe.5G147000' => 'ppe', 'Prupe.6G157300' => 'ppe', 'Prupe.7G163400' => 'ppe', 'Psat0s2177g0040' => 'psa', 'Psat3g174760' => 'psa', 'Psat3g192160' => 'psa', 'Psat4g058520' => 'psa', 'Psat4g096840' => 'psa', 'Psat7g037320' => 'psa', 'PSO017G1274' => 'pso', 'PSO017G5166' => 'pso', 'PSO063G4558' => 'pso', 'PSO170G4458' => 'pso', 'PSO170G5005' => 'pso', 'PSO210G6156' => 'pso', 'PSO210G6635' => 'pso', 'PSO210G7397' => 'pso', 'PSO210G7700' => 'pso', 'PSO455G0035' => 'pso', 'PSO455G0180' => 'pso', 'PSO478G4515' => 'pso', 'PSO832G1305' => 'pso', 'PSO832G3489' => 'pso', 'QL02p075247' => 'qlo', 'QL03p051148' => 'qlo', 'QL05p010313' => 'qlo', 'QL06p034627' => 'qlo', 'QL10p001889' => 'qlo', 'QL10p010846' => 'qlo', 'RcHm_v2.0_Chr1g0350621' => 'rch', 'RcHm_v2.0_Chr1g0350641' => 'rch', 'RcHm_v2.0_Chr2g0092891' => 'rch', 'RcHm_v2.0_Chr2g0100251' => 'rch', 'RcHm_v2.0_Chr2g0158661' => 'rch', 'RcHm_v2.0_Chr2g0172741' => 'rch', 'RcHm_v2.0_Chr4g0429571' => 'rch', 'RcHm_v2.0_Chr5g0042471' => 'rch', 'RcHm_v2.0_Chr7g0189451' => 'rch', 'Rhsim08G0052000' => 'rsi', 'Rhsim08G0174400' => 'rsi', 'Rhsim08G0193200' => 'rsi', 'Rhsim10G0214800' => 'rsi', 'Rhsim10G0214900' => 'rsi', 'Rhsim10G0215000' => 'rsi', 'Rhsim12G0022900' => 'rsi', 'Rhsim12G0177500' => 'rsi', 'Rhsim12G0177700' => 'rsi', 'Sabra03G0122600' => 'sbr', 'Sabra05G0097400' => 'sbr', 'Sabra12G0064100' => 'sbr', 'Sabra15G0121300' => 'sbr', 'SalBow2G0642' => 'sbo', 'SalBow5G2667' => 'sbo', 'SalBow5G4873' => 'sbo', 'SalBow8G2395' => 'sbo', 'Sc03g0003290' => 'sci', 'Sc10g0010130' => 'sci', 'Sc22g0003650' => 'sci', 'Sed0001603' => 'sed', 'Sed0004259' => 'sed', 'Sed0006789' => 'sed', 'Sed0011838' => 'sed', 'Sed0012964' => 'sed', 'Sed0016383' => 'sed', 'Sed0019010' => 'sed', 'Sed0020188' => 'sed', 'SEGI_04702' => 'sgi', 'SEGI_17231' => 'sgi', 'SEGI_18877' => 'sgi', 'SEGI_25196' => 'sgi', 'SEGI_25515' => 'sgi', 'SEGI_28445' => 'sgi', 'SEGI_37452' => 'sgi', 'SGA_v2.0_scaffold188G40336' => 'sas', 'SGA_v2.0_scaffold228G43247' => 'sas', 'SGA_v2.0_scaffold280G46853' => 'sas', 'SGA_v2.0_scaffold34G13808' => 'sas', 'SGA_v2.0_scaffold40G15576' => 'sas', 'SGA_v2.0_scaffold611G53188' => 'sas', 'SGA_v2.0_scaffold78G25461' => 'sas', 'SGA_v2.0_scaffold90G27888' => 'sas', 'SHI08601' => 'shi', 'SHI08606' => 'shi', 'SHI17117' => 'shi', 'SHI17119' => 'shi', 'SMO118G0201' => 'smo', 'SMO169G0247' => 'smo', 'SMO176G0006' => 'smo', 'SMO176G0015' => 'smo', 'SMO202G0006' => 'smo', 'SMO240G0050' => 'smo', 'SMO286G0009' => 'smo', 'SMO338G0033' => 'smo', 'SMO356G0533' => 'smo', 'SMO364G0382' => 'smo', 'SMO367G0166' => 'smo', 'SMO367G1098' => 'smo', 'Solyc01g009920.3' => 'sly', 'Solyc01g099300.3' => 'sly', 'Solyc02g084700.3' => 'sly', 'Solyc03g097520.3' => 'sly', 'Solyc06g071580.3' => 'sly', 'Solyc10g081760.3' => 'sly', 'Sopen01g005480' => 'spe', 'Sopen01g042850' => 'spe', 'Sopen02g029370' => 'spe', 'Sopen03g028280' => 'spe', 'Sopen06g027870' => 'spe', 'Sopen10g032270' => 'spe', 'Sp5g18180' => 'spa', 'Sp6g12880' => 'spa', 'Sp6g30850' => 'spa', 'Sp7g22960' => 'spa', 'Sp7g34010' => 'spa', 'SpUn1326_0010' => 'spa', 'TAR371G0242' => 'tar', 'TAR622G0638' => 'tar', 'TAR628G1548' => 'tar', 'TAR629G1079' => 'tar', 'TAR629G3413' => 'tar', 'THA.LOC104804249' => 'tha', 'THA.LOC104808315' => 'tha', 'THA.LOC104809238' => 'tha', 'THA.LOC104825484' => 'tha', 'Thecc.01G025500' => 'tca', 'Thecc.03G015800' => 'tca', 'Thecc.03G018000' => 'tca', 'Thecc.03G134800' => 'tca', 'Thecc.04G014700' => 'tca', 'Thhalv10006991m.g' => 'esa', 'Thhalv10012707m.g' => 'esa', 'Thhalv10015739m.g' => 'esa', 'Thhalv10024553m.g' => 'esa', 'Thhalv10024673m.g' => 'esa', 'Thhalv10029187m.g' => 'esa', 'TPR.G12971' => 'tpr', 'TPR.G29396' => 'tpr', 'TPR.G33376' => 'tpr', 'TPR.G35508' => 'tpr', 'TPR.G35516' => 'tpr', 'TPR.G37317' => 'tpr', 'TPR.G37389' => 'tpr', 'TPR.G37523' => 'tpr', 'TPR.G559' => 'tpr', 'TWI14G0070' => 'twi', 'TWI14G0729' => 'twi', 'TWI18G0596' => 'twi', 'TWI39G0780' => 'twi', 'TWI39G0850' => 'twi', 'TWI73G1052' => 'twi', 'unitig_52.g17485' => 'ugi', 'unitig_61.g26355' => 'ugi', 'vmacro01040' => 'vma', 'vmacro16731' => 'vma', 'vmacro18270' => 'vma', 'vmacro19142' => 'vma', 'vmacro19407' => 'vma', 'vmacro19408' => 'vma', 'vmacro21899' => 'vma', 'vmacro21900' => 'vma', 'vmacro21901' => 'vma', 'VMungo0251G0490' => 'vmu', 'VMungo0251G1748' => 'vmu', 'VMungo1309G0421' => 'vmu', 'Zm00001eb086500' => 'zma', 'Zm00001eb150680' => 'zma', 'Zm00001eb162330' => 'zma', 'Zm00001eb203130' => 'zma', 'Zm00001eb369480' => 'zma', 'Zm00001eb382340' => 'zma', 'Zm00001eb416360' => 'zma' ), 'gf_id' => 'HOM05D000902', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000902' ), 'data_identifier' => 'HOM05D000902', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000902', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '663', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02470' => 'bna', 'A01p16260' => 'bna', 'A02p01680' => 'bna', 'A03p16600' => 'bna', 'A03p55660' => 'bna', 'A03p64160' => 'bna', 'A03p64170' => 'bna', 'A08p31900' => 'bna', 'A09p59530' => 'bna', 'A10p08230' => 'bna', 'A10p25090' => 'bna', 'Aa31LG3G7100' => 'aar', 'Aa31LG3G7110' => 'aar', 'Aa31LG6G13160' => 'aar', 'Aa31LG7G10770' => 'aar', 'Aa31LG7G3830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2723' => 'aag', 'Actinidia08045' => 'ach', 'Actinidia08888' => 'ach', 'Actinidia18333' => 'ach', 'Actinidia19334' => 'ach', 'Actinidia25552' => 'ach', 'Actinidia26089' => 'ach', 'Actinidia30615' => 'ach', 'Actinidia30616' => 'ach', 'Actinidia33083' => 'ach', 'Actinidia35762' => 'ach', 'Ah.02g110620' => 'amhyb', 'Ah.11g046390' => 'amhyb', 'AL1G31670' => 'aly', 'AL6G23730' => 'aly', 'AL7G14740' => 'aly', 'AL7G14750' => 'aly', 'AL7G14760' => 'aly', 'AL7G28220' => 'aly', 'AL8G24940' => 'aly', 'Aqoxy3G01665' => 'aox', 'Aqoxy3G02853' => 'aox', 'Aqoxy5G01513' => 'aox', 'Aqoxy5G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8SKA4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ75LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKDA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0LJZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7REX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZP4YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWX7I5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2QKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS0L9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPCD8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q161UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC7XCF' => 'arhy', 'AT1G19100' => 'ath', 'AT4G24970' => 'ath', 'AT4G36270' => 'ath', 'AT4G36280' => 'ath', 'AT4G36290' => 'ath', 'AT5G13130' => 'ath', 'AT5G50780' => 'ath', 'ATR0582G266' => 'atr', 'ATR0661G195' => 'atr', 'ATR1152G031' => 'atr', 'Atru.chr11.2382' => 'acertr', 'Atru.chr12.2337' => 'acertr', 'Atru.chr3.744' => 'acertr', 'Atru.chr6.1870' => 'acertr', 'Atru.chr9.2515' => 'acertr', 'AUR62004120' => 'cqu', 'AUR62005667' => 'cqu', 'AUR62007634' => 'cqu', 'AUR62008186' => 'cqu', 'AUR62008187' => 'cqu', 'AUR62008188' => 'cqu', 'AUR62027954' => 'cqu', 'AUR62028766' => 'cqu', 'AUR62028767' => 'cqu', 'AUR62028768' => 'cqu', 'AUR62028886' => 'cqu', 'AUR62029563' => 'cqu', 'AUR62038832' => 'cqu', 'BcaB01g04149' => 'bca', 'BcaB03g12940' => 'bca', 'BcaB03g13090' => 'bca', 'BcaB03g14466' => 'bca', 'BcaB05g24035' => 'bca', 'BcaC01g06050' => 'bca', 'BcaC04g19148' => 'bca', 'BcaC04g20761' => 'bca', 'BcaC06g32845' => 'bca', 'BcaC07g41274' => 'bca', 'BcaC09g50827' => 'bca', 'BcaNung00741' => 'bca', 'BcaNung00742' => 'bca', 'BcaNung01859' => 'bca', 'BcaNung03985' => 'bca', 'BcaNung03989' => 'bca', 'BcaNung05661' => 'bca', 'BolC1t00257H' => 'bol', 'BolC1t01956H' => 'bol', 'BolC2t06534H' => 'bol', 'BolC3t14334H' => 'bol', 'BolC5t30451H' => 'bol', 'BolC7t45880H' => 'bol', 'BolC7t46586H' => 'bol', 'BolC8t49301H' => 'bol', 'BolC8t51837H' => 'bol', 'BolC9t56822H' => 'bol', 'BolC9t59235H' => 'bol', 'BraA01t00234Z' => 'bra', 'BraA01t01563Z' => 'bra', 'BraA02t05147Z' => 'bra', 'BraA03t10947Z' => 'bra', 'BraA03t14633Z' => 'bra', 'BraA08t35112Z' => 'bra', 'BraA09t41330Z' => 'bra', 'BraA10t44570Z' => 'bra', 'C01p02670' => 'bna', 'C01p20260' => 'bna', 'C02p05890' => 'bna', 'C03p19530' => 'bna', 'C05p17470' => 'bna', 'C07p53900' => 'bna', 'C07p61630' => 'bna', 'C08p16800' => 'bna', 'C08p42810' => 'bna', 'C09p39480' => 'bna', 'C09p63980' => 'bna', 'CAN.G1001.7' => 'can', 'CAN.G1034.55' => 'can', 'CAN.G143.7' => 'can', 'CAN.G3340.1' => 'can', 'CAN.G358.19' => 'can', 'CAN.G373.2' => 'can', 'CAN.G674.16' => 'can', 'CAN.G674.17' => 'can', 'CAN.G674.18' => 'can', 'CAN.G732.2' => 'can', 'CAN.G732.3' => 'can', 'CAN.G993.39' => 'can', 'CANSAT01G2052' => 'cansat', 'CANSAT80G0070' => 'cansat', 'CANSAT80G0483' => 'cansat', 'CANSAT80G0625' => 'cansat', 'CARHR019690' => 'chi', 'CARHR080280' => 'chi', 'CARHR152750' => 'chi', 'CARHR152760' => 'chi', 'CARHR152770' => 'chi', 'CARHR200340' => 'chi', 'CARHR232370' => 'chi', 'CARHR244670' => 'chi', 'CARHR244680' => 'chi', 'CARHR257520' => 'chi', 'Carub.0001s1872' => 'cru', 'Carub.0006s1130' => 'cru', 'Carub.0007s0396' => 'cru', 'Carub.0007s0397' => 'cru', 'Carub.0007s1608' => 'cru', 'Carub.0008s1068' => 'cru', 'Carub.0008s1077' => 'cru', 'Ca_16158_v3' => 'car', 'Ca_17571_v3' => 'car', 'Ca_21936_v3' => 'car', 'Ca_22350_v3' => 'car', 'CBR_g22445' => 'cbr', 'CBR_g26290' => 'cbr', 'Cc04_g09610' => 'ccan', 'Cc04_g12280' => 'ccan', 'Cc07_g10230' => 'ccan', 'CDE02G0093' => 'cde', 'CDE02G0701' => 'cde', 'CDE04G1050' => 'cde', 'CDE05G1833' => 'cde', 'CDE05G3058' => 'cde', 'CDE05G3380' => 'cde', 'CDE06G0536' => 'cde', 'Cfa006923' => 'cfa', 'Cfa009402' => 'cfa', 'Cfa018751' => 'cfa', 'Cfa019164' => 'cfa', 'Cfa022935' => 'cfa', 'Ciclev10019081m.g' => 'ccl', 'Ciclev10025076m.g' => 'ccl', 'Ciclev10030712m.g' => 'ccl', 'Ciclev10033760m.g' => 'ccl', 'CiPaw.05G105600' => 'cil', 'CiPaw.08G136700' => 'cil', 'CiPaw.11G003900' => 'cil', 'CiPaw.11G023700' => 'cil', 'CiPaw.12G003700' => 'cil', 'ClCG06G017100' => 'cla', 'ClCG06G018110' => 'cla', 'ClCG07G008800' => 'cla', 'ClCG07G015330' => 'cla', 'COL.COLO4_13698' => 'col', 'COL.COLO4_16659' => 'col', 'COL.COLO4_21986' => 'col', 'COL.COLO4_24049' => 'col', 'COL.COLO4_29061' => 'col', 'COL.COLO4_29075' => 'col', 'COL.COLO4_30094' => 'col', 'Cpa.g.c33689' => 'cpa', 'Cpa.g.sc108.39' => 'cpa', 'Cpa.g.sc108.41' => 'cpa', 'Cpa.g.sc1163.1' => 'cpa', 'Cpa.g.sc4.155' => 'cpa', 'Cpa.g.sc6.194' => 'cpa', 'CsaV3_1G000340' => 'csa', 'CsaV3_1G001400' => 'csa', 'CsaV3_4G002220' => 'csa', 'CsaV3_4G005370' => 'csa', 'CSS0007487' => 'camsi', 'CSS0008066' => 'camsi', 'CSS0009120' => 'camsi', 'CSS0015512' => 'camsi', 'CSS0022409' => 'camsi', 'CSS0025358' => 'camsi', 'CSS0044547' => 'camsi', 'DCAR_013057' => 'dca', 'DCAR_015058' => 'dca', 'DCAR_016027' => 'dca', 'DCAR_017327' => 'dca', 'DCAR_020743' => 'dca', 'DCAR_026157' => 'dca', 'DCAR_032339' => 'dca', 'DCAR_032340' => 'dca', 'Dinv11200' => 'din', 'Dinv11201' => 'din', 'Dinv20631' => 'din', 'Dinv23182' => 'din', 'Dinv33466' => 'din', 'Dinv33583' => 'din', 'Dinv38565' => 'din', 'Duzib068G0200' => 'dzi', 'Duzib147G0132' => 'dzi', 'Duzib147G0635' => 'dzi', 'Duzib205G1670' => 'dzi', 'Duzib251G0606' => 'dzi', 'ECA232G3336' => 'eca', 'ECA232G3763' => 'eca', 'ECA232G4845' => 'eca', 'ECA234G1607' => 'eca', 'ECA246G0932' => 'eca', 'ECA247G0781' => 'eca', 'ECA247G1932' => 'eca', 'ECA247G2079' => 'eca', 'ECA247G3338' => 'eca', 'ECA247G4115' => 'eca', 'EL10Ac3g06552' => 'bvu', 'EL10Ac5g10721' => 'bvu', 'EL10Ac5g10722' => 'bvu', 'EL10Ac5g10723' => 'bvu', 'EL10Ac5g11361' => 'bvu', 'EL10Ac6g13553' => 'bvu', 'EL10As8g23872' => 'bvu', 'Eucgr.B00250' => 'egr', 'Eucgr.B00251' => 'egr', 'Eucgr.B03533' => 'egr', 'Eucgr.I02381' => 'egr', 'Eucgr.K02700' => 'egr', 'FAN02G0174' => 'fan', 'FAN02G3146' => 'fan', 'FAN04G1672' => 'fan', 'FAN04G2273' => 'fan', 'FAN05G2791' => 'fan', 'FAN05G4035' => 'fan', 'FAN07G0834' => 'fan', 'FAN08G1198' => 'fan', 'FAN09G4182' => 'fan', 'FAN12G0496' => 'fan', 'FAN13G1027' => 'fan', 'FAN13G2951' => 'fan', 'FAN14G0705' => 'fan', 'FAN14G0720' => 'fan', 'FAN17G0201' => 'fan', 'FAN17G2665' => 'fan', 'FAN18G1456' => 'fan', 'FAN18G1525' => 'fan', 'FAN18G3500' => 'fan', 'FAN28G2670' => 'fan', 'FvH4_1g12391' => 'fve', 'FvH4_4g23220' => 'fve', 'FvH4_5g08810' => 'fve', 'FvH4_5g28960' => 'fve', 'FvH4_6g42820' => 'fve', 'FvH4_6g51110' => 'fve', 'Glyma.02G051802' => 'gma', 'Glyma.04G185300' => 'gma', 'Glyma.05G202900' => 'gma', 'Glyma.08G010300' => 'gma', 'Glyma.16G131900' => 'gma', 'Glyma.17G087900' => 'gma', 'Gohir.A07G048600' => 'ghi', 'Gohir.A11G179000' => 'ghi', 'Gohir.A12G140900' => 'ghi', 'Gohir.A12G140950' => 'ghi', 'Gohir.A12G191700' => 'ghi', 'Gohir.A13G086300' => 'ghi', 'Gohir.D07G052900' => 'ghi', 'Gohir.D11G186600' => 'ghi', 'Gohir.D12G145575' => 'ghi', 'Gohir.D12G145650' => 'ghi', 'Gohir.D12G145725' => 'ghi', 'Gohir.D12G194050' => 'ghi', 'Gohir.D13G091800' => 'ghi', 'Gorai.001G055900' => 'gra', 'Gorai.007G198400' => 'gra', 'Gorai.008G157000' => 'gra', 'Gorai.008G157100' => 'gra', 'Gorai.008G208700' => 'gra', 'Gorai.010G138700' => 'gra', 'GSVIVG01000977001' => 'vvi', 'GSVIVG01007708001' => 'vvi', 'GSVIVG01008587001' => 'vvi', 'GSVIVG01018849001' => 'vvi', 'GSVIVG01032432001' => 'vvi', 'HanXRQChr02g0034131' => 'han', 'HanXRQChr02g0035981' => 'han', 'HanXRQChr02g0035991' => 'han', 'HanXRQChr05g0155611' => 'han', 'HanXRQChr05g0155621' => 'han', 'HanXRQChr08g0236501' => 'han', 'HanXRQChr09g0261321' => 'han', 'HanXRQChr09g0272081' => 'han', 'HanXRQChr10g0310741' => 'han', 'HanXRQChr11g0325591' => 'han', 'HanXRQChr12g0385691' => 'han', 'HanXRQChr13g0387801' => 'han', 'HanXRQChr15g0463011' => 'han', 'Haze_03826' => 'cav', 'Haze_03827' => 'cav', 'Haze_07183' => 'cav', 'Haze_07537' => 'cav', 'Haze_07539' => 'cav', 'Haze_12461' => 'cav', 'Haze_16115' => 'cav', 'Haze_16808' => 'cav', 'Haze_18531' => 'cav', 'Hma1.2p1_0046F.1_g026700' => 'hma', 'Hma1.2p1_0046F.1_g026710' => 'hma', 'Hma1.2p1_0168F.1_g074340' => 'hma', 'Hma1.2p1_0266F.1_g107030' => 'hma', 'Hma1.2p1_0266F.1_g107060' => 'hma', 'Hma1.2p1_0275F.1_g110510' => 'hma', 'Hma1.2p1_0592F.1_g185490' => 'hma', 'Hma1.2p1_0592F.1_g185500' => 'hma', 'Hma1.2p1_0592F.1_g185510' => 'hma', 'Hma1.2p1_0592F.1_g185520' => 'hma', 'Hma1.2p1_0592F.1_g185530' => 'hma', 'Hma1.2p1_0818F.1_g223450' => 'hma', 'HPP92_009708' => 'vpl', 'HPP92_009793' => 'vpl', 'HPP92_009796' => 'vpl', 'HPP92_009797' => 'vpl', 'HPP92_014940' => 'vpl', 'HPP92_014988' => 'vpl', 'Hund02463' => 'sun', 'Hund02760' => 'sun', 'Hund05071' => 'sun', 'Hund10108' => 'sun', 'Hund11204' => 'sun', 'Hund14016' => 'sun', 'Hund16464' => 'sun', 'Lalb_Chr09g0333391' => 'lal', 'Lalb_Chr11g0070461' => 'lal', 'Lalb_Chr12g0201671' => 'lal', 'Lalb_Chr13g0297161' => 'lal', 'Lj1g0002823' => 'lja', 'Lj3C1074T6' => 'lonja', 'Lj4A212T28' => 'lonja', 'Lj4g0005516' => 'lja', 'Lj4g0013705' => 'lja', 'Lj4g0027865' => 'lja', 'Lj5C92G16' => 'lonja', 'Lj5C92T12' => 'lonja', 'Lj7C596T3' => 'lonja', 'Lj9A446G59' => 'lonja', 'Lj9A482G21' => 'lonja', 'Lsat_1_v5_gn_1_28261' => 'lsa', 'Lsat_1_v5_gn_1_28281' => 'lsa', 'Lsat_1_v5_gn_1_32721' => 'lsa', 'Lsat_1_v5_gn_4_151760' => 'lsa', 'Lsat_1_v5_gn_4_2120' => 'lsa', 'Lsat_1_v5_gn_4_75761' => 'lsa', 'Lsat_1_v5_gn_5_10920' => 'lsa', 'Manes.02G099900' => 'mes', 'Manes.11G096200' => 'mes', 'Manes.12G007200' => 'mes', 'Manes.14G048300' => 'mes', 'Manes.17G114700' => 'mes', 'Mapoly0002s0070' => 'mpo', 'Mapoly0029s0099' => 'mpo', 'MBI07_g24742_MAGBIO' => 'mbi', 'MBI10_g27988_MAGBIO' => 'mbi', 'MBI11_g13057_MAGBIO' => 'mbi', 'MD02G1137200' => 'mdo', 'MD06G1137200' => 'mdo', 'MD07G1122300' => 'mdo', 'MD09G1078200' => 'mdo', 'MD13G1123700' => 'mdo', 'MD14G1151900' => 'mdo', 'MD17G1030900' => 'mdo', 'MD17G1068200' => 'mdo', 'MD17G1068600' => 'mdo', 'Medtr3g077540' => 'mtr', 'Medtr4g105530' => 'mtr', 'Medtr8g076580' => 'mtr', 'Medtr8g076590' => 'mtr', 'Medtr8g096410' => 'mtr', 'MELO3C016411.2' => 'cme', 'MELO3C017780.2' => 'cme', 'MELO3C022560.2' => 'cme', 'MELO3C026187.2' => 'cme', 'MELO3C026286.2' => 'cme', 'MELO3C032854.2' => 'cme', 'Migut.H02495' => 'egut', 'Migut.I00561' => 'egut', 'Migut.K01015' => 'egut', 'Migut.K01016' => 'egut', 'Migut.L00743' => 'egut', 'Migut.L00744' => 'egut', 'Migut.L00746' => 'egut', 'Migut.L00798' => 'egut', 'Migut.L00799' => 'egut', 'Migut.N02096' => 'egut', 'MSTRG.11259' => 'ama', 'MSTRG.23142' => 'ama', 'MSTRG.2499' => 'ama', 'Nitab4.5_0000003g0730' => 'nta', 'Nitab4.5_0000137g0020' => 'nta', 'Nitab4.5_0000721g0210' => 'nta', 'Nitab4.5_0000723g0050' => 'nta', 'Nitab4.5_0000913g0070' => 'nta', 'Nitab4.5_0001332g0040' => 'nta', 'Nitab4.5_0001771g0050' => 'nta', 'Nitab4.5_0001918g0050' => 'nta', 'Nitab4.5_0002686g0030' => 'nta', 'Nitab4.5_0003156g0020' => 'nta', 'Nitab4.5_0003383g0040' => 'nta', 'Nitab4.5_0003918g0010' => 'nta', 'Nitab4.5_0006760g0010' => 'nta', 'Nn1g05981' => 'nnu', 'Nn1g06288' => 'nnu', 'Nn3g16371' => 'nnu', 'Nn3g16786' => 'nnu', 'Nn4g22232' => 'nnu', 'Oeu005144.1' => 'oeu', 'Oeu005145.1' => 'oeu', 'Oeu011348.1' => 'oeu', 'Oeu016415.1' => 'oeu', 'Oeu023501.1' => 'oeu', 'Oeu044473.1' => 'oeu', 'Oeu048892.2' => 'oeu', 'Os01g0549200' => 'osa', 'Os02g0469300' => 'osa', 'Os04g0311100' => 'osa', 'Os06g0474900' => 'osa', 'Os10g0181700' => 'osa', 'Os11g0454800' => 'osa', 'Peaxi162Scf00037g00714' => 'pax', 'Peaxi162Scf00084g01217' => 'pax', 'Peaxi162Scf00257g00217' => 'pax', 'Peaxi162Scf00516g00215' => 'pax', 'Peaxi162Scf00689g00123' => 'pax', 'PGR044G2719' => 'pgr', 'PGR083G1360' => 'pgr', 'PGR102G2849' => 'pgr', 'PGR119G2534' => 'pgr', 'PGSC0003DMG400003538' => 'stu', 'PGSC0003DMG400028138' => 'stu', 'PGSC0003DMG400031732' => 'stu', 'PGSC0003DMG400038165' => 'stu', 'Phvul.002G284600' => 'pvu', 'Phvul.003G258200' => 'pvu', 'Phvul.009G176500' => 'pvu', 'Potri.003G167201' => 'ptr', 'Potri.005G118400' => 'ptr', 'Potri.012G089000' => 'ptr', 'Potri.012G102800' => 'ptr', 'Potri.015G079400' => 'ptr', 'Potri.015G100900' => 'ptr', 'Pp3c14_9810' => 'ppa', 'Pp3c15_10450' => 'ppa', 'Pp3c20_19150' => 'ppa', 'Pp3c23_12740' => 'ppa', 'Pp3c23_6310' => 'ppa', 'Pp3c24_3720' => 'ppa', 'Pp3c27_2580' => 'ppa', 'Pp3c9_8990' => 'ppa', 'PRCOL_00002854' => 'pco', 'Prupe.1G221200' => 'ppe', 'Prupe.3G289000' => 'ppe', 'Prupe.5G147000' => 'ppe', 'Prupe.6G157300' => 'ppe', 'Prupe.7G163400' => 'ppe', 'Psat0s2177g0040' => 'psa', 'Psat3g174760' => 'psa', 'Psat3g192160' => 'psa', 'Psat4g058520' => 'psa', 'Psat4g096840' => 'psa', 'Psat7g037320' => 'psa', 'PSO017G1274' => 'pso', 'PSO017G5166' => 'pso', 'PSO063G4558' => 'pso', 'PSO170G4458' => 'pso', 'PSO170G5005' => 'pso', 'PSO210G6156' => 'pso', 'PSO210G6635' => 'pso', 'PSO210G7397' => 'pso', 'PSO210G7700' => 'pso', 'PSO455G0035' => 'pso', 'PSO455G0180' => 'pso', 'PSO478G4515' => 'pso', 'PSO832G1305' => 'pso', 'PSO832G3489' => 'pso', 'QL02p075247' => 'qlo', 'QL03p051148' => 'qlo', 'QL05p010313' => 'qlo', 'QL06p034627' => 'qlo', 'QL10p001889' => 'qlo', 'QL10p010846' => 'qlo', 'RcHm_v2.0_Chr1g0350621' => 'rch', 'RcHm_v2.0_Chr1g0350641' => 'rch', 'RcHm_v2.0_Chr2g0092891' => 'rch', 'RcHm_v2.0_Chr2g0100251' => 'rch', 'RcHm_v2.0_Chr2g0158661' => 'rch', 'RcHm_v2.0_Chr2g0172741' => 'rch', 'RcHm_v2.0_Chr4g0429571' => 'rch', 'RcHm_v2.0_Chr5g0042471' => 'rch', 'RcHm_v2.0_Chr7g0189451' => 'rch', 'Rhsim08G0052000' => 'rsi', 'Rhsim08G0174400' => 'rsi', 'Rhsim08G0193200' => 'rsi', 'Rhsim10G0214800' => 'rsi', 'Rhsim10G0214900' => 'rsi', 'Rhsim10G0215000' => 'rsi', 'Rhsim12G0022900' => 'rsi', 'Rhsim12G0177500' => 'rsi', 'Rhsim12G0177700' => 'rsi', 'Sabra03G0122600' => 'sbr', 'Sabra05G0097400' => 'sbr', 'Sabra12G0064100' => 'sbr', 'Sabra15G0121300' => 'sbr', 'SalBow2G0642' => 'sbo', 'SalBow5G2667' => 'sbo', 'SalBow5G4873' => 'sbo', 'SalBow8G2395' => 'sbo', 'Sc03g0003290' => 'sci', 'Sc10g0010130' => 'sci', 'Sc22g0003650' => 'sci', 'Sed0001603' => 'sed', 'Sed0004259' => 'sed', 'Sed0006789' => 'sed', 'Sed0011838' => 'sed', 'Sed0012964' => 'sed', 'Sed0016383' => 'sed', 'Sed0019010' => 'sed', 'Sed0020188' => 'sed', 'SEGI_04702' => 'sgi', 'SEGI_17231' => 'sgi', 'SEGI_18877' => 'sgi', 'SEGI_25196' => 'sgi', 'SEGI_25515' => 'sgi', 'SEGI_28445' => 'sgi', 'SEGI_37452' => 'sgi', 'SGA_v2.0_scaffold188G40336' => 'sas', 'SGA_v2.0_scaffold228G43247' => 'sas', 'SGA_v2.0_scaffold280G46853' => 'sas', 'SGA_v2.0_scaffold34G13808' => 'sas', 'SGA_v2.0_scaffold40G15576' => 'sas', 'SGA_v2.0_scaffold611G53188' => 'sas', 'SGA_v2.0_scaffold78G25461' => 'sas', 'SGA_v2.0_scaffold90G27888' => 'sas', 'SHI08601' => 'shi', 'SHI08606' => 'shi', 'SHI17117' => 'shi', 'SHI17119' => 'shi', 'SMO118G0201' => 'smo', 'SMO169G0247' => 'smo', 'SMO176G0006' => 'smo', 'SMO176G0015' => 'smo', 'SMO202G0006' => 'smo', 'SMO240G0050' => 'smo', 'SMO286G0009' => 'smo', 'SMO338G0033' => 'smo', 'SMO356G0533' => 'smo', 'SMO364G0382' => 'smo', 'SMO367G0166' => 'smo', 'SMO367G1098' => 'smo', 'Solyc01g009920.3' => 'sly', 'Solyc01g099300.3' => 'sly', 'Solyc02g084700.3' => 'sly', 'Solyc03g097520.3' => 'sly', 'Solyc06g071580.3' => 'sly', 'Solyc10g081760.3' => 'sly', 'Sopen01g005480' => 'spe', 'Sopen01g042850' => 'spe', 'Sopen02g029370' => 'spe', 'Sopen03g028280' => 'spe', 'Sopen06g027870' => 'spe', 'Sopen10g032270' => 'spe', 'Sp5g18180' => 'spa', 'Sp6g12880' => 'spa', 'Sp6g30850' => 'spa', 'Sp7g22960' => 'spa', 'Sp7g34010' => 'spa', 'SpUn1326_0010' => 'spa', 'TAR371G0242' => 'tar', 'TAR622G0638' => 'tar', 'TAR628G1548' => 'tar', 'TAR629G1079' => 'tar', 'TAR629G3413' => 'tar', 'THA.LOC104804249' => 'tha', 'THA.LOC104808315' => 'tha', 'THA.LOC104809238' => 'tha', 'THA.LOC104825484' => 'tha', 'Thecc.01G025500' => 'tca', 'Thecc.03G015800' => 'tca', 'Thecc.03G018000' => 'tca', 'Thecc.03G134800' => 'tca', 'Thecc.04G014700' => 'tca', 'Thhalv10006991m.g' => 'esa', 'Thhalv10012707m.g' => 'esa', 'Thhalv10015739m.g' => 'esa', 'Thhalv10024553m.g' => 'esa', 'Thhalv10024673m.g' => 'esa', 'Thhalv10029187m.g' => 'esa', 'TPR.G12971' => 'tpr', 'TPR.G29396' => 'tpr', 'TPR.G33376' => 'tpr', 'TPR.G35508' => 'tpr', 'TPR.G35516' => 'tpr', 'TPR.G37317' => 'tpr', 'TPR.G37389' => 'tpr', 'TPR.G37523' => 'tpr', 'TPR.G559' => 'tpr', 'TWI14G0070' => 'twi', 'TWI14G0729' => 'twi', 'TWI18G0596' => 'twi', 'TWI39G0780' => 'twi', 'TWI39G0850' => 'twi', 'TWI73G1052' => 'twi', 'unitig_52.g17485' => 'ugi', 'unitig_61.g26355' => 'ugi', 'vmacro01040' => 'vma', 'vmacro16731' => 'vma', 'vmacro18270' => 'vma', 'vmacro19142' => 'vma', 'vmacro19407' => 'vma', 'vmacro19408' => 'vma', 'vmacro21899' => 'vma', 'vmacro21900' => 'vma', 'vmacro21901' => 'vma', 'VMungo0251G0490' => 'vmu', 'VMungo0251G1748' => 'vmu', 'VMungo1309G0421' => 'vmu', 'Zm00001eb086500' => 'zma', 'Zm00001eb150680' => 'zma', 'Zm00001eb162330' => 'zma', 'Zm00001eb203130' => 'zma', 'Zm00001eb369480' => 'zma', 'Zm00001eb382340' => 'zma', 'Zm00001eb416360' => 'zma' ) $gf_id = 'HOM05D000902' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000902' ) $data_identifier = 'HOM05D000902' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 13, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 10, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 6, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 9, 'hma' => (int) 12, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 4, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 6, 'ppa' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 6, 'rch' => (int) 9, 'rsi' => (int) 9, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 12, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 3, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416360' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000902', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '663', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02470' => 'bna', 'A01p16260' => 'bna', 'A02p01680' => 'bna', 'A03p16600' => 'bna', 'A03p55660' => 'bna', 'A03p64160' => 'bna', 'A03p64170' => 'bna', 'A08p31900' => 'bna', 'A09p59530' => 'bna', 'A10p08230' => 'bna', 'A10p25090' => 'bna', 'Aa31LG3G7100' => 'aar', 'Aa31LG3G7110' => 'aar', 'Aa31LG6G13160' => 'aar', 'Aa31LG7G10770' => 'aar', 'Aa31LG7G3830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2723' => 'aag', 'Actinidia08045' => 'ach', 'Actinidia08888' => 'ach', 'Actinidia18333' => 'ach', 'Actinidia19334' => 'ach', 'Actinidia25552' => 'ach', 'Actinidia26089' => 'ach', 'Actinidia30615' => 'ach', 'Actinidia30616' => 'ach', 'Actinidia33083' => 'ach', 'Actinidia35762' => 'ach', 'Ah.02g110620' => 'amhyb', 'Ah.11g046390' => 'amhyb', 'AL1G31670' => 'aly', 'AL6G23730' => 'aly', 'AL7G14740' => 'aly', 'AL7G14750' => 'aly', 'AL7G14760' => 'aly', 'AL7G28220' => 'aly', 'AL8G24940' => 'aly', 'Aqoxy3G01665' => 'aox', 'Aqoxy3G02853' => 'aox', 'Aqoxy5G01513' => 'aox', 'Aqoxy5G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8SKA4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ75LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKDA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0LJZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7REX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZP4YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWX7I5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2QKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS0L9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPCD8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q161UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC7XCF' => 'arhy', 'AT1G19100' => 'ath', 'AT4G24970' => 'ath', 'AT4G36270' => 'ath', 'AT4G36280' => 'ath', 'AT4G36290' => 'ath', 'AT5G13130' => 'ath', 'AT5G50780' => 'ath', 'ATR0582G266' => 'atr', 'ATR0661G195' => 'atr', 'ATR1152G031' => 'atr', 'Atru.chr11.2382' => 'acertr', 'Atru.chr12.2337' => 'acertr', 'Atru.chr3.744' => 'acertr', 'Atru.chr6.1870' => 'acertr', 'Atru.chr9.2515' => 'acertr', 'AUR62004120' => 'cqu', 'AUR62005667' => 'cqu', 'AUR62007634' => 'cqu', 'AUR62008186' => 'cqu', 'AUR62008187' => 'cqu', 'AUR62008188' => 'cqu', 'AUR62027954' => 'cqu', 'AUR62028766' => 'cqu', 'AUR62028767' => 'cqu', 'AUR62028768' => 'cqu', 'AUR62028886' => 'cqu', 'AUR62029563' => 'cqu', 'AUR62038832' => 'cqu', 'BcaB01g04149' => 'bca', 'BcaB03g12940' => 'bca', 'BcaB03g13090' => 'bca', 'BcaB03g14466' => 'bca', 'BcaB05g24035' => 'bca', 'BcaC01g06050' => 'bca', 'BcaC04g19148' => 'bca', 'BcaC04g20761' => 'bca', 'BcaC06g32845' => 'bca', 'BcaC07g41274' => 'bca', 'BcaC09g50827' => 'bca', 'BcaNung00741' => 'bca', 'BcaNung00742' => 'bca', 'BcaNung01859' => 'bca', 'BcaNung03985' => 'bca', 'BcaNung03989' => 'bca', 'BcaNung05661' => 'bca', 'BolC1t00257H' => 'bol', 'BolC1t01956H' => 'bol', 'BolC2t06534H' => 'bol', 'BolC3t14334H' => 'bol', 'BolC5t30451H' => 'bol', 'BolC7t45880H' => 'bol', 'BolC7t46586H' => 'bol', 'BolC8t49301H' => 'bol', 'BolC8t51837H' => 'bol', 'BolC9t56822H' => 'bol', 'BolC9t59235H' => 'bol', 'BraA01t00234Z' => 'bra', 'BraA01t01563Z' => 'bra', 'BraA02t05147Z' => 'bra', 'BraA03t10947Z' => 'bra', 'BraA03t14633Z' => 'bra', 'BraA08t35112Z' => 'bra', 'BraA09t41330Z' => 'bra', 'BraA10t44570Z' => 'bra', 'C01p02670' => 'bna', 'C01p20260' => 'bna', 'C02p05890' => 'bna', 'C03p19530' => 'bna', 'C05p17470' => 'bna', 'C07p53900' => 'bna', 'C07p61630' => 'bna', 'C08p16800' => 'bna', 'C08p42810' => 'bna', 'C09p39480' => 'bna', 'C09p63980' => 'bna', 'CAN.G1001.7' => 'can', 'CAN.G1034.55' => 'can', 'CAN.G143.7' => 'can', 'CAN.G3340.1' => 'can', 'CAN.G358.19' => 'can', 'CAN.G373.2' => 'can', 'CAN.G674.16' => 'can', 'CAN.G674.17' => 'can', 'CAN.G674.18' => 'can', 'CAN.G732.2' => 'can', 'CAN.G732.3' => 'can', 'CAN.G993.39' => 'can', 'CANSAT01G2052' => 'cansat', 'CANSAT80G0070' => 'cansat', 'CANSAT80G0483' => 'cansat', 'CANSAT80G0625' => 'cansat', 'CARHR019690' => 'chi', 'CARHR080280' => 'chi', 'CARHR152750' => 'chi', 'CARHR152760' => 'chi', 'CARHR152770' => 'chi', 'CARHR200340' => 'chi', 'CARHR232370' => 'chi', 'CARHR244670' => 'chi', 'CARHR244680' => 'chi', 'CARHR257520' => 'chi', 'Carub.0001s1872' => 'cru', 'Carub.0006s1130' => 'cru', 'Carub.0007s0396' => 'cru', 'Carub.0007s0397' => 'cru', 'Carub.0007s1608' => 'cru', 'Carub.0008s1068' => 'cru', 'Carub.0008s1077' => 'cru', 'Ca_16158_v3' => 'car', 'Ca_17571_v3' => 'car', 'Ca_21936_v3' => 'car', 'Ca_22350_v3' => 'car', 'CBR_g22445' => 'cbr', 'CBR_g26290' => 'cbr', 'Cc04_g09610' => 'ccan', 'Cc04_g12280' => 'ccan', 'Cc07_g10230' => 'ccan', 'CDE02G0093' => 'cde', 'CDE02G0701' => 'cde', 'CDE04G1050' => 'cde', 'CDE05G1833' => 'cde', 'CDE05G3058' => 'cde', 'CDE05G3380' => 'cde', 'CDE06G0536' => 'cde', 'Cfa006923' => 'cfa', 'Cfa009402' => 'cfa', 'Cfa018751' => 'cfa', 'Cfa019164' => 'cfa', 'Cfa022935' => 'cfa', 'Ciclev10019081m.g' => 'ccl', 'Ciclev10025076m.g' => 'ccl', 'Ciclev10030712m.g' => 'ccl', 'Ciclev10033760m.g' => 'ccl', 'CiPaw.05G105600' => 'cil', 'CiPaw.08G136700' => 'cil', 'CiPaw.11G003900' => 'cil', 'CiPaw.11G023700' => 'cil', 'CiPaw.12G003700' => 'cil', 'ClCG06G017100' => 'cla', 'ClCG06G018110' => 'cla', 'ClCG07G008800' => 'cla', 'ClCG07G015330' => 'cla', 'COL.COLO4_13698' => 'col', 'COL.COLO4_16659' => 'col', 'COL.COLO4_21986' => 'col', 'COL.COLO4_24049' => 'col', 'COL.COLO4_29061' => 'col', 'COL.COLO4_29075' => 'col', 'COL.COLO4_30094' => 'col', 'Cpa.g.c33689' => 'cpa', 'Cpa.g.sc108.39' => 'cpa', 'Cpa.g.sc108.41' => 'cpa', 'Cpa.g.sc1163.1' => 'cpa', 'Cpa.g.sc4.155' => 'cpa', 'Cpa.g.sc6.194' => 'cpa', 'CsaV3_1G000340' => 'csa', 'CsaV3_1G001400' => 'csa', 'CsaV3_4G002220' => 'csa', 'CsaV3_4G005370' => 'csa', 'CSS0007487' => 'camsi', 'CSS0008066' => 'camsi', 'CSS0009120' => 'camsi', 'CSS0015512' => 'camsi', 'CSS0022409' => 'camsi', 'CSS0025358' => 'camsi', 'CSS0044547' => 'camsi', 'DCAR_013057' => 'dca', 'DCAR_015058' => 'dca', 'DCAR_016027' => 'dca', 'DCAR_017327' => 'dca', 'DCAR_020743' => 'dca', 'DCAR_026157' => 'dca', 'DCAR_032339' => 'dca', 'DCAR_032340' => 'dca', 'Dinv11200' => 'din', 'Dinv11201' => 'din', 'Dinv20631' => 'din', 'Dinv23182' => 'din', 'Dinv33466' => 'din', 'Dinv33583' => 'din', 'Dinv38565' => 'din', 'Duzib068G0200' => 'dzi', 'Duzib147G0132' => 'dzi', 'Duzib147G0635' => 'dzi', 'Duzib205G1670' => 'dzi', 'Duzib251G0606' => 'dzi', 'ECA232G3336' => 'eca', 'ECA232G3763' => 'eca', 'ECA232G4845' => 'eca', 'ECA234G1607' => 'eca', 'ECA246G0932' => 'eca', 'ECA247G0781' => 'eca', 'ECA247G1932' => 'eca', 'ECA247G2079' => 'eca', 'ECA247G3338' => 'eca', 'ECA247G4115' => 'eca', 'EL10Ac3g06552' => 'bvu', 'EL10Ac5g10721' => 'bvu', 'EL10Ac5g10722' => 'bvu', 'EL10Ac5g10723' => 'bvu', 'EL10Ac5g11361' => 'bvu', 'EL10Ac6g13553' => 'bvu', 'EL10As8g23872' => 'bvu', 'Eucgr.B00250' => 'egr', 'Eucgr.B00251' => 'egr', 'Eucgr.B03533' => 'egr', 'Eucgr.I02381' => 'egr', 'Eucgr.K02700' => 'egr', 'FAN02G0174' => 'fan', 'FAN02G3146' => 'fan', 'FAN04G1672' => 'fan', 'FAN04G2273' => 'fan', 'FAN05G2791' => 'fan', 'FAN05G4035' => 'fan', 'FAN07G0834' => 'fan', 'FAN08G1198' => 'fan', 'FAN09G4182' => 'fan', 'FAN12G0496' => 'fan', 'FAN13G1027' => 'fan', 'FAN13G2951' => 'fan', 'FAN14G0705' => 'fan', 'FAN14G0720' => 'fan', 'FAN17G0201' => 'fan', 'FAN17G2665' => 'fan', 'FAN18G1456' => 'fan', 'FAN18G1525' => 'fan', 'FAN18G3500' => 'fan', 'FAN28G2670' => 'fan', 'FvH4_1g12391' => 'fve', 'FvH4_4g23220' => 'fve', 'FvH4_5g08810' => 'fve', 'FvH4_5g28960' => 'fve', 'FvH4_6g42820' => 'fve', 'FvH4_6g51110' => 'fve', 'Glyma.02G051802' => 'gma', 'Glyma.04G185300' => 'gma', 'Glyma.05G202900' => 'gma', 'Glyma.08G010300' => 'gma', 'Glyma.16G131900' => 'gma', 'Glyma.17G087900' => 'gma', 'Gohir.A07G048600' => 'ghi', 'Gohir.A11G179000' => 'ghi', 'Gohir.A12G140900' => 'ghi', 'Gohir.A12G140950' => 'ghi', 'Gohir.A12G191700' => 'ghi', 'Gohir.A13G086300' => 'ghi', 'Gohir.D07G052900' => 'ghi', 'Gohir.D11G186600' => 'ghi', 'Gohir.D12G145575' => 'ghi', 'Gohir.D12G145650' => 'ghi', 'Gohir.D12G145725' => 'ghi', 'Gohir.D12G194050' => 'ghi', 'Gohir.D13G091800' => 'ghi', 'Gorai.001G055900' => 'gra', 'Gorai.007G198400' => 'gra', 'Gorai.008G157000' => 'gra', 'Gorai.008G157100' => 'gra', 'Gorai.008G208700' => 'gra', 'Gorai.010G138700' => 'gra', 'GSVIVG01000977001' => 'vvi', 'GSVIVG01007708001' => 'vvi', 'GSVIVG01008587001' => 'vvi', 'GSVIVG01018849001' => 'vvi', 'GSVIVG01032432001' => 'vvi', 'HanXRQChr02g0034131' => 'han', 'HanXRQChr02g0035981' => 'han', 'HanXRQChr02g0035991' => 'han', 'HanXRQChr05g0155611' => 'han', 'HanXRQChr05g0155621' => 'han', 'HanXRQChr08g0236501' => 'han', 'HanXRQChr09g0261321' => 'han', 'HanXRQChr09g0272081' => 'han', 'HanXRQChr10g0310741' => 'han', 'HanXRQChr11g0325591' => 'han', 'HanXRQChr12g0385691' => 'han', 'HanXRQChr13g0387801' => 'han', 'HanXRQChr15g0463011' => 'han', 'Haze_03826' => 'cav', 'Haze_03827' => 'cav', 'Haze_07183' => 'cav', 'Haze_07537' => 'cav', 'Haze_07539' => 'cav', 'Haze_12461' => 'cav', 'Haze_16115' => 'cav', 'Haze_16808' => 'cav', 'Haze_18531' => 'cav', 'Hma1.2p1_0046F.1_g026700' => 'hma', 'Hma1.2p1_0046F.1_g026710' => 'hma', 'Hma1.2p1_0168F.1_g074340' => 'hma', 'Hma1.2p1_0266F.1_g107030' => 'hma', 'Hma1.2p1_0266F.1_g107060' => 'hma', 'Hma1.2p1_0275F.1_g110510' => 'hma', 'Hma1.2p1_0592F.1_g185490' => 'hma', 'Hma1.2p1_0592F.1_g185500' => 'hma', 'Hma1.2p1_0592F.1_g185510' => 'hma', 'Hma1.2p1_0592F.1_g185520' => 'hma', 'Hma1.2p1_0592F.1_g185530' => 'hma', 'Hma1.2p1_0818F.1_g223450' => 'hma', 'HPP92_009708' => 'vpl', 'HPP92_009793' => 'vpl', 'HPP92_009796' => 'vpl', 'HPP92_009797' => 'vpl', 'HPP92_014940' => 'vpl', 'HPP92_014988' => 'vpl', 'Hund02463' => 'sun', 'Hund02760' => 'sun', 'Hund05071' => 'sun', 'Hund10108' => 'sun', 'Hund11204' => 'sun', 'Hund14016' => 'sun', 'Hund16464' => 'sun', 'Lalb_Chr09g0333391' => 'lal', 'Lalb_Chr11g0070461' => 'lal', 'Lalb_Chr12g0201671' => 'lal', 'Lalb_Chr13g0297161' => 'lal', 'Lj1g0002823' => 'lja', 'Lj3C1074T6' => 'lonja', 'Lj4A212T28' => 'lonja', 'Lj4g0005516' => 'lja', 'Lj4g0013705' => 'lja', 'Lj4g0027865' => 'lja', 'Lj5C92G16' => 'lonja', 'Lj5C92T12' => 'lonja', 'Lj7C596T3' => 'lonja', 'Lj9A446G59' => 'lonja', 'Lj9A482G21' => 'lonja', 'Lsat_1_v5_gn_1_28261' => 'lsa', 'Lsat_1_v5_gn_1_28281' => 'lsa', 'Lsat_1_v5_gn_1_32721' => 'lsa', 'Lsat_1_v5_gn_4_151760' => 'lsa', 'Lsat_1_v5_gn_4_2120' => 'lsa', 'Lsat_1_v5_gn_4_75761' => 'lsa', 'Lsat_1_v5_gn_5_10920' => 'lsa', 'Manes.02G099900' => 'mes', 'Manes.11G096200' => 'mes', 'Manes.12G007200' => 'mes', 'Manes.14G048300' => 'mes', 'Manes.17G114700' => 'mes', 'Mapoly0002s0070' => 'mpo', 'Mapoly0029s0099' => 'mpo', 'MBI07_g24742_MAGBIO' => 'mbi', 'MBI10_g27988_MAGBIO' => 'mbi', 'MBI11_g13057_MAGBIO' => 'mbi', 'MD02G1137200' => 'mdo', 'MD06G1137200' => 'mdo', 'MD07G1122300' => 'mdo', 'MD09G1078200' => 'mdo', 'MD13G1123700' => 'mdo', 'MD14G1151900' => 'mdo', 'MD17G1030900' => 'mdo', 'MD17G1068200' => 'mdo', 'MD17G1068600' => 'mdo', 'Medtr3g077540' => 'mtr', 'Medtr4g105530' => 'mtr', 'Medtr8g076580' => 'mtr', 'Medtr8g076590' => 'mtr', 'Medtr8g096410' => 'mtr', 'MELO3C016411.2' => 'cme', 'MELO3C017780.2' => 'cme', 'MELO3C022560.2' => 'cme', 'MELO3C026187.2' => 'cme', 'MELO3C026286.2' => 'cme', 'MELO3C032854.2' => 'cme', 'Migut.H02495' => 'egut', 'Migut.I00561' => 'egut', 'Migut.K01015' => 'egut', 'Migut.K01016' => 'egut', 'Migut.L00743' => 'egut', 'Migut.L00744' => 'egut', 'Migut.L00746' => 'egut', 'Migut.L00798' => 'egut', 'Migut.L00799' => 'egut', 'Migut.N02096' => 'egut', 'MSTRG.11259' => 'ama', 'MSTRG.23142' => 'ama', 'MSTRG.2499' => 'ama', 'Nitab4.5_0000003g0730' => 'nta', 'Nitab4.5_0000137g0020' => 'nta', 'Nitab4.5_0000721g0210' => 'nta', 'Nitab4.5_0000723g0050' => 'nta', 'Nitab4.5_0000913g0070' => 'nta', 'Nitab4.5_0001332g0040' => 'nta', 'Nitab4.5_0001771g0050' => 'nta', 'Nitab4.5_0001918g0050' => 'nta', 'Nitab4.5_0002686g0030' => 'nta', 'Nitab4.5_0003156g0020' => 'nta', 'Nitab4.5_0003383g0040' => 'nta', 'Nitab4.5_0003918g0010' => 'nta', 'Nitab4.5_0006760g0010' => 'nta', 'Nn1g05981' => 'nnu', 'Nn1g06288' => 'nnu', 'Nn3g16371' => 'nnu', 'Nn3g16786' => 'nnu', 'Nn4g22232' => 'nnu', 'Oeu005144.1' => 'oeu', 'Oeu005145.1' => 'oeu', 'Oeu011348.1' => 'oeu', 'Oeu016415.1' => 'oeu', 'Oeu023501.1' => 'oeu', 'Oeu044473.1' => 'oeu', 'Oeu048892.2' => 'oeu', 'Os01g0549200' => 'osa', 'Os02g0469300' => 'osa', 'Os04g0311100' => 'osa', 'Os06g0474900' => 'osa', 'Os10g0181700' => 'osa', 'Os11g0454800' => 'osa', 'Peaxi162Scf00037g00714' => 'pax', 'Peaxi162Scf00084g01217' => 'pax', 'Peaxi162Scf00257g00217' => 'pax', 'Peaxi162Scf00516g00215' => 'pax', 'Peaxi162Scf00689g00123' => 'pax', 'PGR044G2719' => 'pgr', 'PGR083G1360' => 'pgr', 'PGR102G2849' => 'pgr', 'PGR119G2534' => 'pgr', 'PGSC0003DMG400003538' => 'stu', 'PGSC0003DMG400028138' => 'stu', 'PGSC0003DMG400031732' => 'stu', 'PGSC0003DMG400038165' => 'stu', 'Phvul.002G284600' => 'pvu', 'Phvul.003G258200' => 'pvu', 'Phvul.009G176500' => 'pvu', 'Potri.003G167201' => 'ptr', 'Potri.005G118400' => 'ptr', 'Potri.012G089000' => 'ptr', 'Potri.012G102800' => 'ptr', 'Potri.015G079400' => 'ptr', 'Potri.015G100900' => 'ptr', 'Pp3c14_9810' => 'ppa', 'Pp3c15_10450' => 'ppa', 'Pp3c20_19150' => 'ppa', 'Pp3c23_12740' => 'ppa', 'Pp3c23_6310' => 'ppa', 'Pp3c24_3720' => 'ppa', 'Pp3c27_2580' => 'ppa', 'Pp3c9_8990' => 'ppa', 'PRCOL_00002854' => 'pco', 'Prupe.1G221200' => 'ppe', 'Prupe.3G289000' => 'ppe', 'Prupe.5G147000' => 'ppe', 'Prupe.6G157300' => 'ppe', 'Prupe.7G163400' => 'ppe', 'Psat0s2177g0040' => 'psa', 'Psat3g174760' => 'psa', 'Psat3g192160' => 'psa', 'Psat4g058520' => 'psa', 'Psat4g096840' => 'psa', 'Psat7g037320' => 'psa', 'PSO017G1274' => 'pso', 'PSO017G5166' => 'pso', 'PSO063G4558' => 'pso', 'PSO170G4458' => 'pso', 'PSO170G5005' => 'pso', 'PSO210G6156' => 'pso', 'PSO210G6635' => 'pso', 'PSO210G7397' => 'pso', 'PSO210G7700' => 'pso', 'PSO455G0035' => 'pso', 'PSO455G0180' => 'pso', 'PSO478G4515' => 'pso', 'PSO832G1305' => 'pso', 'PSO832G3489' => 'pso', 'QL02p075247' => 'qlo', 'QL03p051148' => 'qlo', 'QL05p010313' => 'qlo', 'QL06p034627' => 'qlo', 'QL10p001889' => 'qlo', 'QL10p010846' => 'qlo', 'RcHm_v2.0_Chr1g0350621' => 'rch', 'RcHm_v2.0_Chr1g0350641' => 'rch', 'RcHm_v2.0_Chr2g0092891' => 'rch', 'RcHm_v2.0_Chr2g0100251' => 'rch', 'RcHm_v2.0_Chr2g0158661' => 'rch', 'RcHm_v2.0_Chr2g0172741' => 'rch', 'RcHm_v2.0_Chr4g0429571' => 'rch', 'RcHm_v2.0_Chr5g0042471' => 'rch', 'RcHm_v2.0_Chr7g0189451' => 'rch', 'Rhsim08G0052000' => 'rsi', 'Rhsim08G0174400' => 'rsi', 'Rhsim08G0193200' => 'rsi', 'Rhsim10G0214800' => 'rsi', 'Rhsim10G0214900' => 'rsi', 'Rhsim10G0215000' => 'rsi', 'Rhsim12G0022900' => 'rsi', 'Rhsim12G0177500' => 'rsi', 'Rhsim12G0177700' => 'rsi', 'Sabra03G0122600' => 'sbr', 'Sabra05G0097400' => 'sbr', 'Sabra12G0064100' => 'sbr', 'Sabra15G0121300' => 'sbr', 'SalBow2G0642' => 'sbo', 'SalBow5G2667' => 'sbo', 'SalBow5G4873' => 'sbo', 'SalBow8G2395' => 'sbo', 'Sc03g0003290' => 'sci', 'Sc10g0010130' => 'sci', 'Sc22g0003650' => 'sci', 'Sed0001603' => 'sed', 'Sed0004259' => 'sed', 'Sed0006789' => 'sed', 'Sed0011838' => 'sed', 'Sed0012964' => 'sed', 'Sed0016383' => 'sed', 'Sed0019010' => 'sed', 'Sed0020188' => 'sed', 'SEGI_04702' => 'sgi', 'SEGI_17231' => 'sgi', 'SEGI_18877' => 'sgi', 'SEGI_25196' => 'sgi', 'SEGI_25515' => 'sgi', 'SEGI_28445' => 'sgi', 'SEGI_37452' => 'sgi', 'SGA_v2.0_scaffold188G40336' => 'sas', 'SGA_v2.0_scaffold228G43247' => 'sas', 'SGA_v2.0_scaffold280G46853' => 'sas', 'SGA_v2.0_scaffold34G13808' => 'sas', 'SGA_v2.0_scaffold40G15576' => 'sas', 'SGA_v2.0_scaffold611G53188' => 'sas', 'SGA_v2.0_scaffold78G25461' => 'sas', 'SGA_v2.0_scaffold90G27888' => 'sas', 'SHI08601' => 'shi', 'SHI08606' => 'shi', 'SHI17117' => 'shi', 'SHI17119' => 'shi', 'SMO118G0201' => 'smo', 'SMO169G0247' => 'smo', 'SMO176G0006' => 'smo', 'SMO176G0015' => 'smo', 'SMO202G0006' => 'smo', 'SMO240G0050' => 'smo', 'SMO286G0009' => 'smo', 'SMO338G0033' => 'smo', 'SMO356G0533' => 'smo', 'SMO364G0382' => 'smo', 'SMO367G0166' => 'smo', 'SMO367G1098' => 'smo', 'Solyc01g009920.3' => 'sly', 'Solyc01g099300.3' => 'sly', 'Solyc02g084700.3' => 'sly', 'Solyc03g097520.3' => 'sly', 'Solyc06g071580.3' => 'sly', 'Solyc10g081760.3' => 'sly', 'Sopen01g005480' => 'spe', 'Sopen01g042850' => 'spe', 'Sopen02g029370' => 'spe', 'Sopen03g028280' => 'spe', 'Sopen06g027870' => 'spe', 'Sopen10g032270' => 'spe', 'Sp5g18180' => 'spa', 'Sp6g12880' => 'spa', 'Sp6g30850' => 'spa', 'Sp7g22960' => 'spa', 'Sp7g34010' => 'spa', 'SpUn1326_0010' => 'spa', 'TAR371G0242' => 'tar', 'TAR622G0638' => 'tar', 'TAR628G1548' => 'tar', 'TAR629G1079' => 'tar', 'TAR629G3413' => 'tar', 'THA.LOC104804249' => 'tha', 'THA.LOC104808315' => 'tha', 'THA.LOC104809238' => 'tha', 'THA.LOC104825484' => 'tha', 'Thecc.01G025500' => 'tca', 'Thecc.03G015800' => 'tca', 'Thecc.03G018000' => 'tca', 'Thecc.03G134800' => 'tca', 'Thecc.04G014700' => 'tca', 'Thhalv10006991m.g' => 'esa', 'Thhalv10012707m.g' => 'esa', 'Thhalv10015739m.g' => 'esa', 'Thhalv10024553m.g' => 'esa', 'Thhalv10024673m.g' => 'esa', 'Thhalv10029187m.g' => 'esa', 'TPR.G12971' => 'tpr', 'TPR.G29396' => 'tpr', 'TPR.G33376' => 'tpr', 'TPR.G35508' => 'tpr', 'TPR.G35516' => 'tpr', 'TPR.G37317' => 'tpr', 'TPR.G37389' => 'tpr', 'TPR.G37523' => 'tpr', 'TPR.G559' => 'tpr', 'TWI14G0070' => 'twi', 'TWI14G0729' => 'twi', 'TWI18G0596' => 'twi', 'TWI39G0780' => 'twi', 'TWI39G0850' => 'twi', 'TWI73G1052' => 'twi', 'unitig_52.g17485' => 'ugi', 'unitig_61.g26355' => 'ugi', 'vmacro01040' => 'vma', 'vmacro16731' => 'vma', 'vmacro18270' => 'vma', 'vmacro19142' => 'vma', 'vmacro19407' => 'vma', 'vmacro19408' => 'vma', 'vmacro21899' => 'vma', 'vmacro21900' => 'vma', 'vmacro21901' => 'vma', 'VMungo0251G0490' => 'vmu', 'VMungo0251G1748' => 'vmu', 'VMungo1309G0421' => 'vmu', 'Zm00001eb086500' => 'zma', 'Zm00001eb150680' => 'zma', 'Zm00001eb162330' => 'zma', 'Zm00001eb203130' => 'zma', 'Zm00001eb369480' => 'zma', 'Zm00001eb382340' => 'zma', 'Zm00001eb416360' => 'zma' ), 'gf_id' => 'HOM05D000902', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000902' ), 'data_identifier' => 'HOM05D000902', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000902', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '663', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02470' => 'bna', 'A01p16260' => 'bna', 'A02p01680' => 'bna', 'A03p16600' => 'bna', 'A03p55660' => 'bna', 'A03p64160' => 'bna', 'A03p64170' => 'bna', 'A08p31900' => 'bna', 'A09p59530' => 'bna', 'A10p08230' => 'bna', 'A10p25090' => 'bna', 'Aa31LG3G7100' => 'aar', 'Aa31LG3G7110' => 'aar', 'Aa31LG6G13160' => 'aar', 'Aa31LG7G10770' => 'aar', 'Aa31LG7G3830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2723' => 'aag', 'Actinidia08045' => 'ach', 'Actinidia08888' => 'ach', 'Actinidia18333' => 'ach', 'Actinidia19334' => 'ach', 'Actinidia25552' => 'ach', 'Actinidia26089' => 'ach', 'Actinidia30615' => 'ach', 'Actinidia30616' => 'ach', 'Actinidia33083' => 'ach', 'Actinidia35762' => 'ach', 'Ah.02g110620' => 'amhyb', 'Ah.11g046390' => 'amhyb', 'AL1G31670' => 'aly', 'AL6G23730' => 'aly', 'AL7G14740' => 'aly', 'AL7G14750' => 'aly', 'AL7G14760' => 'aly', 'AL7G28220' => 'aly', 'AL8G24940' => 'aly', 'Aqoxy3G01665' => 'aox', 'Aqoxy3G02853' => 'aox', 'Aqoxy5G01513' => 'aox', 'Aqoxy5G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8SKA4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ75LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKDA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0LJZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7REX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZP4YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWX7I5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2QKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS0L9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPCD8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q161UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC7XCF' => 'arhy', 'AT1G19100' => 'ath', 'AT4G24970' => 'ath', 'AT4G36270' => 'ath', 'AT4G36280' => 'ath', 'AT4G36290' => 'ath', 'AT5G13130' => 'ath', 'AT5G50780' => 'ath', 'ATR0582G266' => 'atr', 'ATR0661G195' => 'atr', 'ATR1152G031' => 'atr', 'Atru.chr11.2382' => 'acertr', 'Atru.chr12.2337' => 'acertr', 'Atru.chr3.744' => 'acertr', 'Atru.chr6.1870' => 'acertr', 'Atru.chr9.2515' => 'acertr', 'AUR62004120' => 'cqu', 'AUR62005667' => 'cqu', 'AUR62007634' => 'cqu', 'AUR62008186' => 'cqu', 'AUR62008187' => 'cqu', 'AUR62008188' => 'cqu', 'AUR62027954' => 'cqu', 'AUR62028766' => 'cqu', 'AUR62028767' => 'cqu', 'AUR62028768' => 'cqu', 'AUR62028886' => 'cqu', 'AUR62029563' => 'cqu', 'AUR62038832' => 'cqu', 'BcaB01g04149' => 'bca', 'BcaB03g12940' => 'bca', 'BcaB03g13090' => 'bca', 'BcaB03g14466' => 'bca', 'BcaB05g24035' => 'bca', 'BcaC01g06050' => 'bca', 'BcaC04g19148' => 'bca', 'BcaC04g20761' => 'bca', 'BcaC06g32845' => 'bca', 'BcaC07g41274' => 'bca', 'BcaC09g50827' => 'bca', 'BcaNung00741' => 'bca', 'BcaNung00742' => 'bca', 'BcaNung01859' => 'bca', 'BcaNung03985' => 'bca', 'BcaNung03989' => 'bca', 'BcaNung05661' => 'bca', 'BolC1t00257H' => 'bol', 'BolC1t01956H' => 'bol', 'BolC2t06534H' => 'bol', 'BolC3t14334H' => 'bol', 'BolC5t30451H' => 'bol', 'BolC7t45880H' => 'bol', 'BolC7t46586H' => 'bol', 'BolC8t49301H' => 'bol', 'BolC8t51837H' => 'bol', 'BolC9t56822H' => 'bol', 'BolC9t59235H' => 'bol', 'BraA01t00234Z' => 'bra', 'BraA01t01563Z' => 'bra', 'BraA02t05147Z' => 'bra', 'BraA03t10947Z' => 'bra', 'BraA03t14633Z' => 'bra', 'BraA08t35112Z' => 'bra', 'BraA09t41330Z' => 'bra', 'BraA10t44570Z' => 'bra', 'C01p02670' => 'bna', 'C01p20260' => 'bna', 'C02p05890' => 'bna', 'C03p19530' => 'bna', 'C05p17470' => 'bna', 'C07p53900' => 'bna', 'C07p61630' => 'bna', 'C08p16800' => 'bna', 'C08p42810' => 'bna', 'C09p39480' => 'bna', 'C09p63980' => 'bna', 'CAN.G1001.7' => 'can', 'CAN.G1034.55' => 'can', 'CAN.G143.7' => 'can', 'CAN.G3340.1' => 'can', 'CAN.G358.19' => 'can', 'CAN.G373.2' => 'can', 'CAN.G674.16' => 'can', 'CAN.G674.17' => 'can', 'CAN.G674.18' => 'can', 'CAN.G732.2' => 'can', 'CAN.G732.3' => 'can', 'CAN.G993.39' => 'can', 'CANSAT01G2052' => 'cansat', 'CANSAT80G0070' => 'cansat', 'CANSAT80G0483' => 'cansat', 'CANSAT80G0625' => 'cansat', 'CARHR019690' => 'chi', 'CARHR080280' => 'chi', 'CARHR152750' => 'chi', 'CARHR152760' => 'chi', 'CARHR152770' => 'chi', 'CARHR200340' => 'chi', 'CARHR232370' => 'chi', 'CARHR244670' => 'chi', 'CARHR244680' => 'chi', 'CARHR257520' => 'chi', 'Carub.0001s1872' => 'cru', 'Carub.0006s1130' => 'cru', 'Carub.0007s0396' => 'cru', 'Carub.0007s0397' => 'cru', 'Carub.0007s1608' => 'cru', 'Carub.0008s1068' => 'cru', 'Carub.0008s1077' => 'cru', 'Ca_16158_v3' => 'car', 'Ca_17571_v3' => 'car', 'Ca_21936_v3' => 'car', 'Ca_22350_v3' => 'car', 'CBR_g22445' => 'cbr', 'CBR_g26290' => 'cbr', 'Cc04_g09610' => 'ccan', 'Cc04_g12280' => 'ccan', 'Cc07_g10230' => 'ccan', 'CDE02G0093' => 'cde', 'CDE02G0701' => 'cde', 'CDE04G1050' => 'cde', 'CDE05G1833' => 'cde', 'CDE05G3058' => 'cde', 'CDE05G3380' => 'cde', 'CDE06G0536' => 'cde', 'Cfa006923' => 'cfa', 'Cfa009402' => 'cfa', 'Cfa018751' => 'cfa', 'Cfa019164' => 'cfa', 'Cfa022935' => 'cfa', 'Ciclev10019081m.g' => 'ccl', 'Ciclev10025076m.g' => 'ccl', 'Ciclev10030712m.g' => 'ccl', 'Ciclev10033760m.g' => 'ccl', 'CiPaw.05G105600' => 'cil', 'CiPaw.08G136700' => 'cil', 'CiPaw.11G003900' => 'cil', 'CiPaw.11G023700' => 'cil', 'CiPaw.12G003700' => 'cil', 'ClCG06G017100' => 'cla', 'ClCG06G018110' => 'cla', 'ClCG07G008800' => 'cla', 'ClCG07G015330' => 'cla', 'COL.COLO4_13698' => 'col', 'COL.COLO4_16659' => 'col', 'COL.COLO4_21986' => 'col', 'COL.COLO4_24049' => 'col', 'COL.COLO4_29061' => 'col', 'COL.COLO4_29075' => 'col', 'COL.COLO4_30094' => 'col', 'Cpa.g.c33689' => 'cpa', 'Cpa.g.sc108.39' => 'cpa', 'Cpa.g.sc108.41' => 'cpa', 'Cpa.g.sc1163.1' => 'cpa', 'Cpa.g.sc4.155' => 'cpa', 'Cpa.g.sc6.194' => 'cpa', 'CsaV3_1G000340' => 'csa', 'CsaV3_1G001400' => 'csa', 'CsaV3_4G002220' => 'csa', 'CsaV3_4G005370' => 'csa', 'CSS0007487' => 'camsi', 'CSS0008066' => 'camsi', 'CSS0009120' => 'camsi', 'CSS0015512' => 'camsi', 'CSS0022409' => 'camsi', 'CSS0025358' => 'camsi', 'CSS0044547' => 'camsi', 'DCAR_013057' => 'dca', 'DCAR_015058' => 'dca', 'DCAR_016027' => 'dca', 'DCAR_017327' => 'dca', 'DCAR_020743' => 'dca', 'DCAR_026157' => 'dca', 'DCAR_032339' => 'dca', 'DCAR_032340' => 'dca', 'Dinv11200' => 'din', 'Dinv11201' => 'din', 'Dinv20631' => 'din', 'Dinv23182' => 'din', 'Dinv33466' => 'din', 'Dinv33583' => 'din', 'Dinv38565' => 'din', 'Duzib068G0200' => 'dzi', 'Duzib147G0132' => 'dzi', 'Duzib147G0635' => 'dzi', 'Duzib205G1670' => 'dzi', 'Duzib251G0606' => 'dzi', 'ECA232G3336' => 'eca', 'ECA232G3763' => 'eca', 'ECA232G4845' => 'eca', 'ECA234G1607' => 'eca', 'ECA246G0932' => 'eca', 'ECA247G0781' => 'eca', 'ECA247G1932' => 'eca', 'ECA247G2079' => 'eca', 'ECA247G3338' => 'eca', 'ECA247G4115' => 'eca', 'EL10Ac3g06552' => 'bvu', 'EL10Ac5g10721' => 'bvu', 'EL10Ac5g10722' => 'bvu', 'EL10Ac5g10723' => 'bvu', 'EL10Ac5g11361' => 'bvu', 'EL10Ac6g13553' => 'bvu', 'EL10As8g23872' => 'bvu', 'Eucgr.B00250' => 'egr', 'Eucgr.B00251' => 'egr', 'Eucgr.B03533' => 'egr', 'Eucgr.I02381' => 'egr', 'Eucgr.K02700' => 'egr', 'FAN02G0174' => 'fan', 'FAN02G3146' => 'fan', 'FAN04G1672' => 'fan', 'FAN04G2273' => 'fan', 'FAN05G2791' => 'fan', 'FAN05G4035' => 'fan', 'FAN07G0834' => 'fan', 'FAN08G1198' => 'fan', 'FAN09G4182' => 'fan', 'FAN12G0496' => 'fan', 'FAN13G1027' => 'fan', 'FAN13G2951' => 'fan', 'FAN14G0705' => 'fan', 'FAN14G0720' => 'fan', 'FAN17G0201' => 'fan', 'FAN17G2665' => 'fan', 'FAN18G1456' => 'fan', 'FAN18G1525' => 'fan', 'FAN18G3500' => 'fan', 'FAN28G2670' => 'fan', 'FvH4_1g12391' => 'fve', 'FvH4_4g23220' => 'fve', 'FvH4_5g08810' => 'fve', 'FvH4_5g28960' => 'fve', 'FvH4_6g42820' => 'fve', 'FvH4_6g51110' => 'fve', 'Glyma.02G051802' => 'gma', 'Glyma.04G185300' => 'gma', 'Glyma.05G202900' => 'gma', 'Glyma.08G010300' => 'gma', 'Glyma.16G131900' => 'gma', 'Glyma.17G087900' => 'gma', 'Gohir.A07G048600' => 'ghi', 'Gohir.A11G179000' => 'ghi', 'Gohir.A12G140900' => 'ghi', 'Gohir.A12G140950' => 'ghi', 'Gohir.A12G191700' => 'ghi', 'Gohir.A13G086300' => 'ghi', 'Gohir.D07G052900' => 'ghi', 'Gohir.D11G186600' => 'ghi', 'Gohir.D12G145575' => 'ghi', 'Gohir.D12G145650' => 'ghi', 'Gohir.D12G145725' => 'ghi', 'Gohir.D12G194050' => 'ghi', 'Gohir.D13G091800' => 'ghi', 'Gorai.001G055900' => 'gra', 'Gorai.007G198400' => 'gra', 'Gorai.008G157000' => 'gra', 'Gorai.008G157100' => 'gra', 'Gorai.008G208700' => 'gra', 'Gorai.010G138700' => 'gra', 'GSVIVG01000977001' => 'vvi', 'GSVIVG01007708001' => 'vvi', 'GSVIVG01008587001' => 'vvi', 'GSVIVG01018849001' => 'vvi', 'GSVIVG01032432001' => 'vvi', 'HanXRQChr02g0034131' => 'han', 'HanXRQChr02g0035981' => 'han', 'HanXRQChr02g0035991' => 'han', 'HanXRQChr05g0155611' => 'han', 'HanXRQChr05g0155621' => 'han', 'HanXRQChr08g0236501' => 'han', 'HanXRQChr09g0261321' => 'han', 'HanXRQChr09g0272081' => 'han', 'HanXRQChr10g0310741' => 'han', 'HanXRQChr11g0325591' => 'han', 'HanXRQChr12g0385691' => 'han', 'HanXRQChr13g0387801' => 'han', 'HanXRQChr15g0463011' => 'han', 'Haze_03826' => 'cav', 'Haze_03827' => 'cav', 'Haze_07183' => 'cav', 'Haze_07537' => 'cav', 'Haze_07539' => 'cav', 'Haze_12461' => 'cav', 'Haze_16115' => 'cav', 'Haze_16808' => 'cav', 'Haze_18531' => 'cav', 'Hma1.2p1_0046F.1_g026700' => 'hma', 'Hma1.2p1_0046F.1_g026710' => 'hma', 'Hma1.2p1_0168F.1_g074340' => 'hma', 'Hma1.2p1_0266F.1_g107030' => 'hma', 'Hma1.2p1_0266F.1_g107060' => 'hma', 'Hma1.2p1_0275F.1_g110510' => 'hma', 'Hma1.2p1_0592F.1_g185490' => 'hma', 'Hma1.2p1_0592F.1_g185500' => 'hma', 'Hma1.2p1_0592F.1_g185510' => 'hma', 'Hma1.2p1_0592F.1_g185520' => 'hma', 'Hma1.2p1_0592F.1_g185530' => 'hma', 'Hma1.2p1_0818F.1_g223450' => 'hma', 'HPP92_009708' => 'vpl', 'HPP92_009793' => 'vpl', 'HPP92_009796' => 'vpl', 'HPP92_009797' => 'vpl', 'HPP92_014940' => 'vpl', 'HPP92_014988' => 'vpl', 'Hund02463' => 'sun', 'Hund02760' => 'sun', 'Hund05071' => 'sun', 'Hund10108' => 'sun', 'Hund11204' => 'sun', 'Hund14016' => 'sun', 'Hund16464' => 'sun', 'Lalb_Chr09g0333391' => 'lal', 'Lalb_Chr11g0070461' => 'lal', 'Lalb_Chr12g0201671' => 'lal', 'Lalb_Chr13g0297161' => 'lal', 'Lj1g0002823' => 'lja', 'Lj3C1074T6' => 'lonja', 'Lj4A212T28' => 'lonja', 'Lj4g0005516' => 'lja', 'Lj4g0013705' => 'lja', 'Lj4g0027865' => 'lja', 'Lj5C92G16' => 'lonja', 'Lj5C92T12' => 'lonja', 'Lj7C596T3' => 'lonja', 'Lj9A446G59' => 'lonja', 'Lj9A482G21' => 'lonja', 'Lsat_1_v5_gn_1_28261' => 'lsa', 'Lsat_1_v5_gn_1_28281' => 'lsa', 'Lsat_1_v5_gn_1_32721' => 'lsa', 'Lsat_1_v5_gn_4_151760' => 'lsa', 'Lsat_1_v5_gn_4_2120' => 'lsa', 'Lsat_1_v5_gn_4_75761' => 'lsa', 'Lsat_1_v5_gn_5_10920' => 'lsa', 'Manes.02G099900' => 'mes', 'Manes.11G096200' => 'mes', 'Manes.12G007200' => 'mes', 'Manes.14G048300' => 'mes', 'Manes.17G114700' => 'mes', 'Mapoly0002s0070' => 'mpo', 'Mapoly0029s0099' => 'mpo', 'MBI07_g24742_MAGBIO' => 'mbi', 'MBI10_g27988_MAGBIO' => 'mbi', 'MBI11_g13057_MAGBIO' => 'mbi', 'MD02G1137200' => 'mdo', 'MD06G1137200' => 'mdo', 'MD07G1122300' => 'mdo', 'MD09G1078200' => 'mdo', 'MD13G1123700' => 'mdo', 'MD14G1151900' => 'mdo', 'MD17G1030900' => 'mdo', 'MD17G1068200' => 'mdo', 'MD17G1068600' => 'mdo', 'Medtr3g077540' => 'mtr', 'Medtr4g105530' => 'mtr', 'Medtr8g076580' => 'mtr', 'Medtr8g076590' => 'mtr', 'Medtr8g096410' => 'mtr', 'MELO3C016411.2' => 'cme', 'MELO3C017780.2' => 'cme', 'MELO3C022560.2' => 'cme', 'MELO3C026187.2' => 'cme', 'MELO3C026286.2' => 'cme', 'MELO3C032854.2' => 'cme', 'Migut.H02495' => 'egut', 'Migut.I00561' => 'egut', 'Migut.K01015' => 'egut', 'Migut.K01016' => 'egut', 'Migut.L00743' => 'egut', 'Migut.L00744' => 'egut', 'Migut.L00746' => 'egut', 'Migut.L00798' => 'egut', 'Migut.L00799' => 'egut', 'Migut.N02096' => 'egut', 'MSTRG.11259' => 'ama', 'MSTRG.23142' => 'ama', 'MSTRG.2499' => 'ama', 'Nitab4.5_0000003g0730' => 'nta', 'Nitab4.5_0000137g0020' => 'nta', 'Nitab4.5_0000721g0210' => 'nta', 'Nitab4.5_0000723g0050' => 'nta', 'Nitab4.5_0000913g0070' => 'nta', 'Nitab4.5_0001332g0040' => 'nta', 'Nitab4.5_0001771g0050' => 'nta', 'Nitab4.5_0001918g0050' => 'nta', 'Nitab4.5_0002686g0030' => 'nta', 'Nitab4.5_0003156g0020' => 'nta', 'Nitab4.5_0003383g0040' => 'nta', 'Nitab4.5_0003918g0010' => 'nta', 'Nitab4.5_0006760g0010' => 'nta', 'Nn1g05981' => 'nnu', 'Nn1g06288' => 'nnu', 'Nn3g16371' => 'nnu', 'Nn3g16786' => 'nnu', 'Nn4g22232' => 'nnu', 'Oeu005144.1' => 'oeu', 'Oeu005145.1' => 'oeu', 'Oeu011348.1' => 'oeu', 'Oeu016415.1' => 'oeu', 'Oeu023501.1' => 'oeu', 'Oeu044473.1' => 'oeu', 'Oeu048892.2' => 'oeu', 'Os01g0549200' => 'osa', 'Os02g0469300' => 'osa', 'Os04g0311100' => 'osa', 'Os06g0474900' => 'osa', 'Os10g0181700' => 'osa', 'Os11g0454800' => 'osa', 'Peaxi162Scf00037g00714' => 'pax', 'Peaxi162Scf00084g01217' => 'pax', 'Peaxi162Scf00257g00217' => 'pax', 'Peaxi162Scf00516g00215' => 'pax', 'Peaxi162Scf00689g00123' => 'pax', 'PGR044G2719' => 'pgr', 'PGR083G1360' => 'pgr', 'PGR102G2849' => 'pgr', 'PGR119G2534' => 'pgr', 'PGSC0003DMG400003538' => 'stu', 'PGSC0003DMG400028138' => 'stu', 'PGSC0003DMG400031732' => 'stu', 'PGSC0003DMG400038165' => 'stu', 'Phvul.002G284600' => 'pvu', 'Phvul.003G258200' => 'pvu', 'Phvul.009G176500' => 'pvu', 'Potri.003G167201' => 'ptr', 'Potri.005G118400' => 'ptr', 'Potri.012G089000' => 'ptr', 'Potri.012G102800' => 'ptr', 'Potri.015G079400' => 'ptr', 'Potri.015G100900' => 'ptr', 'Pp3c14_9810' => 'ppa', 'Pp3c15_10450' => 'ppa', 'Pp3c20_19150' => 'ppa', 'Pp3c23_12740' => 'ppa', 'Pp3c23_6310' => 'ppa', 'Pp3c24_3720' => 'ppa', 'Pp3c27_2580' => 'ppa', 'Pp3c9_8990' => 'ppa', 'PRCOL_00002854' => 'pco', 'Prupe.1G221200' => 'ppe', 'Prupe.3G289000' => 'ppe', 'Prupe.5G147000' => 'ppe', 'Prupe.6G157300' => 'ppe', 'Prupe.7G163400' => 'ppe', 'Psat0s2177g0040' => 'psa', 'Psat3g174760' => 'psa', 'Psat3g192160' => 'psa', 'Psat4g058520' => 'psa', 'Psat4g096840' => 'psa', 'Psat7g037320' => 'psa', 'PSO017G1274' => 'pso', 'PSO017G5166' => 'pso', 'PSO063G4558' => 'pso', 'PSO170G4458' => 'pso', 'PSO170G5005' => 'pso', 'PSO210G6156' => 'pso', 'PSO210G6635' => 'pso', 'PSO210G7397' => 'pso', 'PSO210G7700' => 'pso', 'PSO455G0035' => 'pso', 'PSO455G0180' => 'pso', 'PSO478G4515' => 'pso', 'PSO832G1305' => 'pso', 'PSO832G3489' => 'pso', 'QL02p075247' => 'qlo', 'QL03p051148' => 'qlo', 'QL05p010313' => 'qlo', 'QL06p034627' => 'qlo', 'QL10p001889' => 'qlo', 'QL10p010846' => 'qlo', 'RcHm_v2.0_Chr1g0350621' => 'rch', 'RcHm_v2.0_Chr1g0350641' => 'rch', 'RcHm_v2.0_Chr2g0092891' => 'rch', 'RcHm_v2.0_Chr2g0100251' => 'rch', 'RcHm_v2.0_Chr2g0158661' => 'rch', 'RcHm_v2.0_Chr2g0172741' => 'rch', 'RcHm_v2.0_Chr4g0429571' => 'rch', 'RcHm_v2.0_Chr5g0042471' => 'rch', 'RcHm_v2.0_Chr7g0189451' => 'rch', 'Rhsim08G0052000' => 'rsi', 'Rhsim08G0174400' => 'rsi', 'Rhsim08G0193200' => 'rsi', 'Rhsim10G0214800' => 'rsi', 'Rhsim10G0214900' => 'rsi', 'Rhsim10G0215000' => 'rsi', 'Rhsim12G0022900' => 'rsi', 'Rhsim12G0177500' => 'rsi', 'Rhsim12G0177700' => 'rsi', 'Sabra03G0122600' => 'sbr', 'Sabra05G0097400' => 'sbr', 'Sabra12G0064100' => 'sbr', 'Sabra15G0121300' => 'sbr', 'SalBow2G0642' => 'sbo', 'SalBow5G2667' => 'sbo', 'SalBow5G4873' => 'sbo', 'SalBow8G2395' => 'sbo', 'Sc03g0003290' => 'sci', 'Sc10g0010130' => 'sci', 'Sc22g0003650' => 'sci', 'Sed0001603' => 'sed', 'Sed0004259' => 'sed', 'Sed0006789' => 'sed', 'Sed0011838' => 'sed', 'Sed0012964' => 'sed', 'Sed0016383' => 'sed', 'Sed0019010' => 'sed', 'Sed0020188' => 'sed', 'SEGI_04702' => 'sgi', 'SEGI_17231' => 'sgi', 'SEGI_18877' => 'sgi', 'SEGI_25196' => 'sgi', 'SEGI_25515' => 'sgi', 'SEGI_28445' => 'sgi', 'SEGI_37452' => 'sgi', 'SGA_v2.0_scaffold188G40336' => 'sas', 'SGA_v2.0_scaffold228G43247' => 'sas', 'SGA_v2.0_scaffold280G46853' => 'sas', 'SGA_v2.0_scaffold34G13808' => 'sas', 'SGA_v2.0_scaffold40G15576' => 'sas', 'SGA_v2.0_scaffold611G53188' => 'sas', 'SGA_v2.0_scaffold78G25461' => 'sas', 'SGA_v2.0_scaffold90G27888' => 'sas', 'SHI08601' => 'shi', 'SHI08606' => 'shi', 'SHI17117' => 'shi', 'SHI17119' => 'shi', 'SMO118G0201' => 'smo', 'SMO169G0247' => 'smo', 'SMO176G0006' => 'smo', 'SMO176G0015' => 'smo', 'SMO202G0006' => 'smo', 'SMO240G0050' => 'smo', 'SMO286G0009' => 'smo', 'SMO338G0033' => 'smo', 'SMO356G0533' => 'smo', 'SMO364G0382' => 'smo', 'SMO367G0166' => 'smo', 'SMO367G1098' => 'smo', 'Solyc01g009920.3' => 'sly', 'Solyc01g099300.3' => 'sly', 'Solyc02g084700.3' => 'sly', 'Solyc03g097520.3' => 'sly', 'Solyc06g071580.3' => 'sly', 'Solyc10g081760.3' => 'sly', 'Sopen01g005480' => 'spe', 'Sopen01g042850' => 'spe', 'Sopen02g029370' => 'spe', 'Sopen03g028280' => 'spe', 'Sopen06g027870' => 'spe', 'Sopen10g032270' => 'spe', 'Sp5g18180' => 'spa', 'Sp6g12880' => 'spa', 'Sp6g30850' => 'spa', 'Sp7g22960' => 'spa', 'Sp7g34010' => 'spa', 'SpUn1326_0010' => 'spa', 'TAR371G0242' => 'tar', 'TAR622G0638' => 'tar', 'TAR628G1548' => 'tar', 'TAR629G1079' => 'tar', 'TAR629G3413' => 'tar', 'THA.LOC104804249' => 'tha', 'THA.LOC104808315' => 'tha', 'THA.LOC104809238' => 'tha', 'THA.LOC104825484' => 'tha', 'Thecc.01G025500' => 'tca', 'Thecc.03G015800' => 'tca', 'Thecc.03G018000' => 'tca', 'Thecc.03G134800' => 'tca', 'Thecc.04G014700' => 'tca', 'Thhalv10006991m.g' => 'esa', 'Thhalv10012707m.g' => 'esa', 'Thhalv10015739m.g' => 'esa', 'Thhalv10024553m.g' => 'esa', 'Thhalv10024673m.g' => 'esa', 'Thhalv10029187m.g' => 'esa', 'TPR.G12971' => 'tpr', 'TPR.G29396' => 'tpr', 'TPR.G33376' => 'tpr', 'TPR.G35508' => 'tpr', 'TPR.G35516' => 'tpr', 'TPR.G37317' => 'tpr', 'TPR.G37389' => 'tpr', 'TPR.G37523' => 'tpr', 'TPR.G559' => 'tpr', 'TWI14G0070' => 'twi', 'TWI14G0729' => 'twi', 'TWI18G0596' => 'twi', 'TWI39G0780' => 'twi', 'TWI39G0850' => 'twi', 'TWI73G1052' => 'twi', 'unitig_52.g17485' => 'ugi', 'unitig_61.g26355' => 'ugi', 'vmacro01040' => 'vma', 'vmacro16731' => 'vma', 'vmacro18270' => 'vma', 'vmacro19142' => 'vma', 'vmacro19407' => 'vma', 'vmacro19408' => 'vma', 'vmacro21899' => 'vma', 'vmacro21900' => 'vma', 'vmacro21901' => 'vma', 'VMungo0251G0490' => 'vmu', 'VMungo0251G1748' => 'vmu', 'VMungo1309G0421' => 'vmu', 'Zm00001eb086500' => 'zma', 'Zm00001eb150680' => 'zma', 'Zm00001eb162330' => 'zma', 'Zm00001eb203130' => 'zma', 'Zm00001eb369480' => 'zma', 'Zm00001eb382340' => 'zma', 'Zm00001eb416360' => 'zma' ) $gf_id = 'HOM05D000902' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000902' ) $data_identifier = 'HOM05D000902' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 13, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 10, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 6, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 9, 'hma' => (int) 12, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 4, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 6, 'ppa' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 6, 'rch' => (int) 9, 'rsi' => (int) 9, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 12, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 3, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416360' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000902', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '663', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02470' => 'bna', 'A01p16260' => 'bna', 'A02p01680' => 'bna', 'A03p16600' => 'bna', 'A03p55660' => 'bna', 'A03p64160' => 'bna', 'A03p64170' => 'bna', 'A08p31900' => 'bna', 'A09p59530' => 'bna', 'A10p08230' => 'bna', 'A10p25090' => 'bna', 'Aa31LG3G7100' => 'aar', 'Aa31LG3G7110' => 'aar', 'Aa31LG6G13160' => 'aar', 'Aa31LG7G10770' => 'aar', 'Aa31LG7G3830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2723' => 'aag', 'Actinidia08045' => 'ach', 'Actinidia08888' => 'ach', 'Actinidia18333' => 'ach', 'Actinidia19334' => 'ach', 'Actinidia25552' => 'ach', 'Actinidia26089' => 'ach', 'Actinidia30615' => 'ach', 'Actinidia30616' => 'ach', 'Actinidia33083' => 'ach', 'Actinidia35762' => 'ach', 'Ah.02g110620' => 'amhyb', 'Ah.11g046390' => 'amhyb', 'AL1G31670' => 'aly', 'AL6G23730' => 'aly', 'AL7G14740' => 'aly', 'AL7G14750' => 'aly', 'AL7G14760' => 'aly', 'AL7G28220' => 'aly', 'AL8G24940' => 'aly', 'Aqoxy3G01665' => 'aox', 'Aqoxy3G02853' => 'aox', 'Aqoxy5G01513' => 'aox', 'Aqoxy5G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8SKA4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ75LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKDA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0LJZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7REX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZP4YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWX7I5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2QKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS0L9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPCD8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q161UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC7XCF' => 'arhy', 'AT1G19100' => 'ath', 'AT4G24970' => 'ath', 'AT4G36270' => 'ath', 'AT4G36280' => 'ath', 'AT4G36290' => 'ath', 'AT5G13130' => 'ath', 'AT5G50780' => 'ath', 'ATR0582G266' => 'atr', 'ATR0661G195' => 'atr', 'ATR1152G031' => 'atr', 'Atru.chr11.2382' => 'acertr', 'Atru.chr12.2337' => 'acertr', 'Atru.chr3.744' => 'acertr', 'Atru.chr6.1870' => 'acertr', 'Atru.chr9.2515' => 'acertr', 'AUR62004120' => 'cqu', 'AUR62005667' => 'cqu', 'AUR62007634' => 'cqu', 'AUR62008186' => 'cqu', 'AUR62008187' => 'cqu', 'AUR62008188' => 'cqu', 'AUR62027954' => 'cqu', 'AUR62028766' => 'cqu', 'AUR62028767' => 'cqu', 'AUR62028768' => 'cqu', 'AUR62028886' => 'cqu', 'AUR62029563' => 'cqu', 'AUR62038832' => 'cqu', 'BcaB01g04149' => 'bca', 'BcaB03g12940' => 'bca', 'BcaB03g13090' => 'bca', 'BcaB03g14466' => 'bca', 'BcaB05g24035' => 'bca', 'BcaC01g06050' => 'bca', 'BcaC04g19148' => 'bca', 'BcaC04g20761' => 'bca', 'BcaC06g32845' => 'bca', 'BcaC07g41274' => 'bca', 'BcaC09g50827' => 'bca', 'BcaNung00741' => 'bca', 'BcaNung00742' => 'bca', 'BcaNung01859' => 'bca', 'BcaNung03985' => 'bca', 'BcaNung03989' => 'bca', 'BcaNung05661' => 'bca', 'BolC1t00257H' => 'bol', 'BolC1t01956H' => 'bol', 'BolC2t06534H' => 'bol', 'BolC3t14334H' => 'bol', 'BolC5t30451H' => 'bol', 'BolC7t45880H' => 'bol', 'BolC7t46586H' => 'bol', 'BolC8t49301H' => 'bol', 'BolC8t51837H' => 'bol', 'BolC9t56822H' => 'bol', 'BolC9t59235H' => 'bol', 'BraA01t00234Z' => 'bra', 'BraA01t01563Z' => 'bra', 'BraA02t05147Z' => 'bra', 'BraA03t10947Z' => 'bra', 'BraA03t14633Z' => 'bra', 'BraA08t35112Z' => 'bra', 'BraA09t41330Z' => 'bra', 'BraA10t44570Z' => 'bra', 'C01p02670' => 'bna', 'C01p20260' => 'bna', 'C02p05890' => 'bna', 'C03p19530' => 'bna', 'C05p17470' => 'bna', 'C07p53900' => 'bna', 'C07p61630' => 'bna', 'C08p16800' => 'bna', 'C08p42810' => 'bna', 'C09p39480' => 'bna', 'C09p63980' => 'bna', 'CAN.G1001.7' => 'can', 'CAN.G1034.55' => 'can', 'CAN.G143.7' => 'can', 'CAN.G3340.1' => 'can', 'CAN.G358.19' => 'can', 'CAN.G373.2' => 'can', 'CAN.G674.16' => 'can', 'CAN.G674.17' => 'can', 'CAN.G674.18' => 'can', 'CAN.G732.2' => 'can', 'CAN.G732.3' => 'can', 'CAN.G993.39' => 'can', 'CANSAT01G2052' => 'cansat', 'CANSAT80G0070' => 'cansat', 'CANSAT80G0483' => 'cansat', 'CANSAT80G0625' => 'cansat', 'CARHR019690' => 'chi', 'CARHR080280' => 'chi', 'CARHR152750' => 'chi', 'CARHR152760' => 'chi', 'CARHR152770' => 'chi', 'CARHR200340' => 'chi', 'CARHR232370' => 'chi', 'CARHR244670' => 'chi', 'CARHR244680' => 'chi', 'CARHR257520' => 'chi', 'Carub.0001s1872' => 'cru', 'Carub.0006s1130' => 'cru', 'Carub.0007s0396' => 'cru', 'Carub.0007s0397' => 'cru', 'Carub.0007s1608' => 'cru', 'Carub.0008s1068' => 'cru', 'Carub.0008s1077' => 'cru', 'Ca_16158_v3' => 'car', 'Ca_17571_v3' => 'car', 'Ca_21936_v3' => 'car', 'Ca_22350_v3' => 'car', 'CBR_g22445' => 'cbr', 'CBR_g26290' => 'cbr', 'Cc04_g09610' => 'ccan', 'Cc04_g12280' => 'ccan', 'Cc07_g10230' => 'ccan', 'CDE02G0093' => 'cde', 'CDE02G0701' => 'cde', 'CDE04G1050' => 'cde', 'CDE05G1833' => 'cde', 'CDE05G3058' => 'cde', 'CDE05G3380' => 'cde', 'CDE06G0536' => 'cde', 'Cfa006923' => 'cfa', 'Cfa009402' => 'cfa', 'Cfa018751' => 'cfa', 'Cfa019164' => 'cfa', 'Cfa022935' => 'cfa', 'Ciclev10019081m.g' => 'ccl', 'Ciclev10025076m.g' => 'ccl', 'Ciclev10030712m.g' => 'ccl', 'Ciclev10033760m.g' => 'ccl', 'CiPaw.05G105600' => 'cil', 'CiPaw.08G136700' => 'cil', 'CiPaw.11G003900' => 'cil', 'CiPaw.11G023700' => 'cil', 'CiPaw.12G003700' => 'cil', 'ClCG06G017100' => 'cla', 'ClCG06G018110' => 'cla', 'ClCG07G008800' => 'cla', 'ClCG07G015330' => 'cla', 'COL.COLO4_13698' => 'col', 'COL.COLO4_16659' => 'col', 'COL.COLO4_21986' => 'col', 'COL.COLO4_24049' => 'col', 'COL.COLO4_29061' => 'col', 'COL.COLO4_29075' => 'col', 'COL.COLO4_30094' => 'col', 'Cpa.g.c33689' => 'cpa', 'Cpa.g.sc108.39' => 'cpa', 'Cpa.g.sc108.41' => 'cpa', 'Cpa.g.sc1163.1' => 'cpa', 'Cpa.g.sc4.155' => 'cpa', 'Cpa.g.sc6.194' => 'cpa', 'CsaV3_1G000340' => 'csa', 'CsaV3_1G001400' => 'csa', 'CsaV3_4G002220' => 'csa', 'CsaV3_4G005370' => 'csa', 'CSS0007487' => 'camsi', 'CSS0008066' => 'camsi', 'CSS0009120' => 'camsi', 'CSS0015512' => 'camsi', 'CSS0022409' => 'camsi', 'CSS0025358' => 'camsi', 'CSS0044547' => 'camsi', 'DCAR_013057' => 'dca', 'DCAR_015058' => 'dca', 'DCAR_016027' => 'dca', 'DCAR_017327' => 'dca', 'DCAR_020743' => 'dca', 'DCAR_026157' => 'dca', 'DCAR_032339' => 'dca', 'DCAR_032340' => 'dca', 'Dinv11200' => 'din', 'Dinv11201' => 'din', 'Dinv20631' => 'din', 'Dinv23182' => 'din', 'Dinv33466' => 'din', 'Dinv33583' => 'din', 'Dinv38565' => 'din', 'Duzib068G0200' => 'dzi', 'Duzib147G0132' => 'dzi', 'Duzib147G0635' => 'dzi', 'Duzib205G1670' => 'dzi', 'Duzib251G0606' => 'dzi', 'ECA232G3336' => 'eca', 'ECA232G3763' => 'eca', 'ECA232G4845' => 'eca', 'ECA234G1607' => 'eca', 'ECA246G0932' => 'eca', 'ECA247G0781' => 'eca', 'ECA247G1932' => 'eca', 'ECA247G2079' => 'eca', 'ECA247G3338' => 'eca', 'ECA247G4115' => 'eca', 'EL10Ac3g06552' => 'bvu', 'EL10Ac5g10721' => 'bvu', 'EL10Ac5g10722' => 'bvu', 'EL10Ac5g10723' => 'bvu', 'EL10Ac5g11361' => 'bvu', 'EL10Ac6g13553' => 'bvu', 'EL10As8g23872' => 'bvu', 'Eucgr.B00250' => 'egr', 'Eucgr.B00251' => 'egr', 'Eucgr.B03533' => 'egr', 'Eucgr.I02381' => 'egr', 'Eucgr.K02700' => 'egr', 'FAN02G0174' => 'fan', 'FAN02G3146' => 'fan', 'FAN04G1672' => 'fan', 'FAN04G2273' => 'fan', 'FAN05G2791' => 'fan', 'FAN05G4035' => 'fan', 'FAN07G0834' => 'fan', 'FAN08G1198' => 'fan', 'FAN09G4182' => 'fan', 'FAN12G0496' => 'fan', 'FAN13G1027' => 'fan', 'FAN13G2951' => 'fan', 'FAN14G0705' => 'fan', 'FAN14G0720' => 'fan', 'FAN17G0201' => 'fan', 'FAN17G2665' => 'fan', 'FAN18G1456' => 'fan', 'FAN18G1525' => 'fan', 'FAN18G3500' => 'fan', 'FAN28G2670' => 'fan', 'FvH4_1g12391' => 'fve', 'FvH4_4g23220' => 'fve', 'FvH4_5g08810' => 'fve', 'FvH4_5g28960' => 'fve', 'FvH4_6g42820' => 'fve', 'FvH4_6g51110' => 'fve', 'Glyma.02G051802' => 'gma', 'Glyma.04G185300' => 'gma', 'Glyma.05G202900' => 'gma', 'Glyma.08G010300' => 'gma', 'Glyma.16G131900' => 'gma', 'Glyma.17G087900' => 'gma', 'Gohir.A07G048600' => 'ghi', 'Gohir.A11G179000' => 'ghi', 'Gohir.A12G140900' => 'ghi', 'Gohir.A12G140950' => 'ghi', 'Gohir.A12G191700' => 'ghi', 'Gohir.A13G086300' => 'ghi', 'Gohir.D07G052900' => 'ghi', 'Gohir.D11G186600' => 'ghi', 'Gohir.D12G145575' => 'ghi', 'Gohir.D12G145650' => 'ghi', 'Gohir.D12G145725' => 'ghi', 'Gohir.D12G194050' => 'ghi', 'Gohir.D13G091800' => 'ghi', 'Gorai.001G055900' => 'gra', 'Gorai.007G198400' => 'gra', 'Gorai.008G157000' => 'gra', 'Gorai.008G157100' => 'gra', 'Gorai.008G208700' => 'gra', 'Gorai.010G138700' => 'gra', 'GSVIVG01000977001' => 'vvi', 'GSVIVG01007708001' => 'vvi', 'GSVIVG01008587001' => 'vvi', 'GSVIVG01018849001' => 'vvi', 'GSVIVG01032432001' => 'vvi', 'HanXRQChr02g0034131' => 'han', 'HanXRQChr02g0035981' => 'han', 'HanXRQChr02g0035991' => 'han', 'HanXRQChr05g0155611' => 'han', 'HanXRQChr05g0155621' => 'han', 'HanXRQChr08g0236501' => 'han', 'HanXRQChr09g0261321' => 'han', 'HanXRQChr09g0272081' => 'han', 'HanXRQChr10g0310741' => 'han', 'HanXRQChr11g0325591' => 'han', 'HanXRQChr12g0385691' => 'han', 'HanXRQChr13g0387801' => 'han', 'HanXRQChr15g0463011' => 'han', 'Haze_03826' => 'cav', 'Haze_03827' => 'cav', 'Haze_07183' => 'cav', 'Haze_07537' => 'cav', 'Haze_07539' => 'cav', 'Haze_12461' => 'cav', 'Haze_16115' => 'cav', 'Haze_16808' => 'cav', 'Haze_18531' => 'cav', 'Hma1.2p1_0046F.1_g026700' => 'hma', 'Hma1.2p1_0046F.1_g026710' => 'hma', 'Hma1.2p1_0168F.1_g074340' => 'hma', 'Hma1.2p1_0266F.1_g107030' => 'hma', 'Hma1.2p1_0266F.1_g107060' => 'hma', 'Hma1.2p1_0275F.1_g110510' => 'hma', 'Hma1.2p1_0592F.1_g185490' => 'hma', 'Hma1.2p1_0592F.1_g185500' => 'hma', 'Hma1.2p1_0592F.1_g185510' => 'hma', 'Hma1.2p1_0592F.1_g185520' => 'hma', 'Hma1.2p1_0592F.1_g185530' => 'hma', 'Hma1.2p1_0818F.1_g223450' => 'hma', 'HPP92_009708' => 'vpl', 'HPP92_009793' => 'vpl', 'HPP92_009796' => 'vpl', 'HPP92_009797' => 'vpl', 'HPP92_014940' => 'vpl', 'HPP92_014988' => 'vpl', 'Hund02463' => 'sun', 'Hund02760' => 'sun', 'Hund05071' => 'sun', 'Hund10108' => 'sun', 'Hund11204' => 'sun', 'Hund14016' => 'sun', 'Hund16464' => 'sun', 'Lalb_Chr09g0333391' => 'lal', 'Lalb_Chr11g0070461' => 'lal', 'Lalb_Chr12g0201671' => 'lal', 'Lalb_Chr13g0297161' => 'lal', 'Lj1g0002823' => 'lja', 'Lj3C1074T6' => 'lonja', 'Lj4A212T28' => 'lonja', 'Lj4g0005516' => 'lja', 'Lj4g0013705' => 'lja', 'Lj4g0027865' => 'lja', 'Lj5C92G16' => 'lonja', 'Lj5C92T12' => 'lonja', 'Lj7C596T3' => 'lonja', 'Lj9A446G59' => 'lonja', 'Lj9A482G21' => 'lonja', 'Lsat_1_v5_gn_1_28261' => 'lsa', 'Lsat_1_v5_gn_1_28281' => 'lsa', 'Lsat_1_v5_gn_1_32721' => 'lsa', 'Lsat_1_v5_gn_4_151760' => 'lsa', 'Lsat_1_v5_gn_4_2120' => 'lsa', 'Lsat_1_v5_gn_4_75761' => 'lsa', 'Lsat_1_v5_gn_5_10920' => 'lsa', 'Manes.02G099900' => 'mes', 'Manes.11G096200' => 'mes', 'Manes.12G007200' => 'mes', 'Manes.14G048300' => 'mes', 'Manes.17G114700' => 'mes', 'Mapoly0002s0070' => 'mpo', 'Mapoly0029s0099' => 'mpo', 'MBI07_g24742_MAGBIO' => 'mbi', 'MBI10_g27988_MAGBIO' => 'mbi', 'MBI11_g13057_MAGBIO' => 'mbi', 'MD02G1137200' => 'mdo', 'MD06G1137200' => 'mdo', 'MD07G1122300' => 'mdo', 'MD09G1078200' => 'mdo', 'MD13G1123700' => 'mdo', 'MD14G1151900' => 'mdo', 'MD17G1030900' => 'mdo', 'MD17G1068200' => 'mdo', 'MD17G1068600' => 'mdo', 'Medtr3g077540' => 'mtr', 'Medtr4g105530' => 'mtr', 'Medtr8g076580' => 'mtr', 'Medtr8g076590' => 'mtr', 'Medtr8g096410' => 'mtr', 'MELO3C016411.2' => 'cme', 'MELO3C017780.2' => 'cme', 'MELO3C022560.2' => 'cme', 'MELO3C026187.2' => 'cme', 'MELO3C026286.2' => 'cme', 'MELO3C032854.2' => 'cme', 'Migut.H02495' => 'egut', 'Migut.I00561' => 'egut', 'Migut.K01015' => 'egut', 'Migut.K01016' => 'egut', 'Migut.L00743' => 'egut', 'Migut.L00744' => 'egut', 'Migut.L00746' => 'egut', 'Migut.L00798' => 'egut', 'Migut.L00799' => 'egut', 'Migut.N02096' => 'egut', 'MSTRG.11259' => 'ama', 'MSTRG.23142' => 'ama', 'MSTRG.2499' => 'ama', 'Nitab4.5_0000003g0730' => 'nta', 'Nitab4.5_0000137g0020' => 'nta', 'Nitab4.5_0000721g0210' => 'nta', 'Nitab4.5_0000723g0050' => 'nta', 'Nitab4.5_0000913g0070' => 'nta', 'Nitab4.5_0001332g0040' => 'nta', 'Nitab4.5_0001771g0050' => 'nta', 'Nitab4.5_0001918g0050' => 'nta', 'Nitab4.5_0002686g0030' => 'nta', 'Nitab4.5_0003156g0020' => 'nta', 'Nitab4.5_0003383g0040' => 'nta', 'Nitab4.5_0003918g0010' => 'nta', 'Nitab4.5_0006760g0010' => 'nta', 'Nn1g05981' => 'nnu', 'Nn1g06288' => 'nnu', 'Nn3g16371' => 'nnu', 'Nn3g16786' => 'nnu', 'Nn4g22232' => 'nnu', 'Oeu005144.1' => 'oeu', 'Oeu005145.1' => 'oeu', 'Oeu011348.1' => 'oeu', 'Oeu016415.1' => 'oeu', 'Oeu023501.1' => 'oeu', 'Oeu044473.1' => 'oeu', 'Oeu048892.2' => 'oeu', 'Os01g0549200' => 'osa', 'Os02g0469300' => 'osa', 'Os04g0311100' => 'osa', 'Os06g0474900' => 'osa', 'Os10g0181700' => 'osa', 'Os11g0454800' => 'osa', 'Peaxi162Scf00037g00714' => 'pax', 'Peaxi162Scf00084g01217' => 'pax', 'Peaxi162Scf00257g00217' => 'pax', 'Peaxi162Scf00516g00215' => 'pax', 'Peaxi162Scf00689g00123' => 'pax', 'PGR044G2719' => 'pgr', 'PGR083G1360' => 'pgr', 'PGR102G2849' => 'pgr', 'PGR119G2534' => 'pgr', 'PGSC0003DMG400003538' => 'stu', 'PGSC0003DMG400028138' => 'stu', 'PGSC0003DMG400031732' => 'stu', 'PGSC0003DMG400038165' => 'stu', 'Phvul.002G284600' => 'pvu', 'Phvul.003G258200' => 'pvu', 'Phvul.009G176500' => 'pvu', 'Potri.003G167201' => 'ptr', 'Potri.005G118400' => 'ptr', 'Potri.012G089000' => 'ptr', 'Potri.012G102800' => 'ptr', 'Potri.015G079400' => 'ptr', 'Potri.015G100900' => 'ptr', 'Pp3c14_9810' => 'ppa', 'Pp3c15_10450' => 'ppa', 'Pp3c20_19150' => 'ppa', 'Pp3c23_12740' => 'ppa', 'Pp3c23_6310' => 'ppa', 'Pp3c24_3720' => 'ppa', 'Pp3c27_2580' => 'ppa', 'Pp3c9_8990' => 'ppa', 'PRCOL_00002854' => 'pco', 'Prupe.1G221200' => 'ppe', 'Prupe.3G289000' => 'ppe', 'Prupe.5G147000' => 'ppe', 'Prupe.6G157300' => 'ppe', 'Prupe.7G163400' => 'ppe', 'Psat0s2177g0040' => 'psa', 'Psat3g174760' => 'psa', 'Psat3g192160' => 'psa', 'Psat4g058520' => 'psa', 'Psat4g096840' => 'psa', 'Psat7g037320' => 'psa', 'PSO017G1274' => 'pso', 'PSO017G5166' => 'pso', 'PSO063G4558' => 'pso', 'PSO170G4458' => 'pso', 'PSO170G5005' => 'pso', 'PSO210G6156' => 'pso', 'PSO210G6635' => 'pso', 'PSO210G7397' => 'pso', 'PSO210G7700' => 'pso', 'PSO455G0035' => 'pso', 'PSO455G0180' => 'pso', 'PSO478G4515' => 'pso', 'PSO832G1305' => 'pso', 'PSO832G3489' => 'pso', 'QL02p075247' => 'qlo', 'QL03p051148' => 'qlo', 'QL05p010313' => 'qlo', 'QL06p034627' => 'qlo', 'QL10p001889' => 'qlo', 'QL10p010846' => 'qlo', 'RcHm_v2.0_Chr1g0350621' => 'rch', 'RcHm_v2.0_Chr1g0350641' => 'rch', 'RcHm_v2.0_Chr2g0092891' => 'rch', 'RcHm_v2.0_Chr2g0100251' => 'rch', 'RcHm_v2.0_Chr2g0158661' => 'rch', 'RcHm_v2.0_Chr2g0172741' => 'rch', 'RcHm_v2.0_Chr4g0429571' => 'rch', 'RcHm_v2.0_Chr5g0042471' => 'rch', 'RcHm_v2.0_Chr7g0189451' => 'rch', 'Rhsim08G0052000' => 'rsi', 'Rhsim08G0174400' => 'rsi', 'Rhsim08G0193200' => 'rsi', 'Rhsim10G0214800' => 'rsi', 'Rhsim10G0214900' => 'rsi', 'Rhsim10G0215000' => 'rsi', 'Rhsim12G0022900' => 'rsi', 'Rhsim12G0177500' => 'rsi', 'Rhsim12G0177700' => 'rsi', 'Sabra03G0122600' => 'sbr', 'Sabra05G0097400' => 'sbr', 'Sabra12G0064100' => 'sbr', 'Sabra15G0121300' => 'sbr', 'SalBow2G0642' => 'sbo', 'SalBow5G2667' => 'sbo', 'SalBow5G4873' => 'sbo', 'SalBow8G2395' => 'sbo', 'Sc03g0003290' => 'sci', 'Sc10g0010130' => 'sci', 'Sc22g0003650' => 'sci', 'Sed0001603' => 'sed', 'Sed0004259' => 'sed', 'Sed0006789' => 'sed', 'Sed0011838' => 'sed', 'Sed0012964' => 'sed', 'Sed0016383' => 'sed', 'Sed0019010' => 'sed', 'Sed0020188' => 'sed', 'SEGI_04702' => 'sgi', 'SEGI_17231' => 'sgi', 'SEGI_18877' => 'sgi', 'SEGI_25196' => 'sgi', 'SEGI_25515' => 'sgi', 'SEGI_28445' => 'sgi', 'SEGI_37452' => 'sgi', 'SGA_v2.0_scaffold188G40336' => 'sas', 'SGA_v2.0_scaffold228G43247' => 'sas', 'SGA_v2.0_scaffold280G46853' => 'sas', 'SGA_v2.0_scaffold34G13808' => 'sas', 'SGA_v2.0_scaffold40G15576' => 'sas', 'SGA_v2.0_scaffold611G53188' => 'sas', 'SGA_v2.0_scaffold78G25461' => 'sas', 'SGA_v2.0_scaffold90G27888' => 'sas', 'SHI08601' => 'shi', 'SHI08606' => 'shi', 'SHI17117' => 'shi', 'SHI17119' => 'shi', 'SMO118G0201' => 'smo', 'SMO169G0247' => 'smo', 'SMO176G0006' => 'smo', 'SMO176G0015' => 'smo', 'SMO202G0006' => 'smo', 'SMO240G0050' => 'smo', 'SMO286G0009' => 'smo', 'SMO338G0033' => 'smo', 'SMO356G0533' => 'smo', 'SMO364G0382' => 'smo', 'SMO367G0166' => 'smo', 'SMO367G1098' => 'smo', 'Solyc01g009920.3' => 'sly', 'Solyc01g099300.3' => 'sly', 'Solyc02g084700.3' => 'sly', 'Solyc03g097520.3' => 'sly', 'Solyc06g071580.3' => 'sly', 'Solyc10g081760.3' => 'sly', 'Sopen01g005480' => 'spe', 'Sopen01g042850' => 'spe', 'Sopen02g029370' => 'spe', 'Sopen03g028280' => 'spe', 'Sopen06g027870' => 'spe', 'Sopen10g032270' => 'spe', 'Sp5g18180' => 'spa', 'Sp6g12880' => 'spa', 'Sp6g30850' => 'spa', 'Sp7g22960' => 'spa', 'Sp7g34010' => 'spa', 'SpUn1326_0010' => 'spa', 'TAR371G0242' => 'tar', 'TAR622G0638' => 'tar', 'TAR628G1548' => 'tar', 'TAR629G1079' => 'tar', 'TAR629G3413' => 'tar', 'THA.LOC104804249' => 'tha', 'THA.LOC104808315' => 'tha', 'THA.LOC104809238' => 'tha', 'THA.LOC104825484' => 'tha', 'Thecc.01G025500' => 'tca', 'Thecc.03G015800' => 'tca', 'Thecc.03G018000' => 'tca', 'Thecc.03G134800' => 'tca', 'Thecc.04G014700' => 'tca', 'Thhalv10006991m.g' => 'esa', 'Thhalv10012707m.g' => 'esa', 'Thhalv10015739m.g' => 'esa', 'Thhalv10024553m.g' => 'esa', 'Thhalv10024673m.g' => 'esa', 'Thhalv10029187m.g' => 'esa', 'TPR.G12971' => 'tpr', 'TPR.G29396' => 'tpr', 'TPR.G33376' => 'tpr', 'TPR.G35508' => 'tpr', 'TPR.G35516' => 'tpr', 'TPR.G37317' => 'tpr', 'TPR.G37389' => 'tpr', 'TPR.G37523' => 'tpr', 'TPR.G559' => 'tpr', 'TWI14G0070' => 'twi', 'TWI14G0729' => 'twi', 'TWI18G0596' => 'twi', 'TWI39G0780' => 'twi', 'TWI39G0850' => 'twi', 'TWI73G1052' => 'twi', 'unitig_52.g17485' => 'ugi', 'unitig_61.g26355' => 'ugi', 'vmacro01040' => 'vma', 'vmacro16731' => 'vma', 'vmacro18270' => 'vma', 'vmacro19142' => 'vma', 'vmacro19407' => 'vma', 'vmacro19408' => 'vma', 'vmacro21899' => 'vma', 'vmacro21900' => 'vma', 'vmacro21901' => 'vma', 'VMungo0251G0490' => 'vmu', 'VMungo0251G1748' => 'vmu', 'VMungo1309G0421' => 'vmu', 'Zm00001eb086500' => 'zma', 'Zm00001eb150680' => 'zma', 'Zm00001eb162330' => 'zma', 'Zm00001eb203130' => 'zma', 'Zm00001eb369480' => 'zma', 'Zm00001eb382340' => 'zma', 'Zm00001eb416360' => 'zma' ), 'gf_id' => 'HOM05D000902', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000902' ), 'data_identifier' => 'HOM05D000902', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000902', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '663', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02470' => 'bna', 'A01p16260' => 'bna', 'A02p01680' => 'bna', 'A03p16600' => 'bna', 'A03p55660' => 'bna', 'A03p64160' => 'bna', 'A03p64170' => 'bna', 'A08p31900' => 'bna', 'A09p59530' => 'bna', 'A10p08230' => 'bna', 'A10p25090' => 'bna', 'Aa31LG3G7100' => 'aar', 'Aa31LG3G7110' => 'aar', 'Aa31LG6G13160' => 'aar', 'Aa31LG7G10770' => 'aar', 'Aa31LG7G3830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2723' => 'aag', 'Actinidia08045' => 'ach', 'Actinidia08888' => 'ach', 'Actinidia18333' => 'ach', 'Actinidia19334' => 'ach', 'Actinidia25552' => 'ach', 'Actinidia26089' => 'ach', 'Actinidia30615' => 'ach', 'Actinidia30616' => 'ach', 'Actinidia33083' => 'ach', 'Actinidia35762' => 'ach', 'Ah.02g110620' => 'amhyb', 'Ah.11g046390' => 'amhyb', 'AL1G31670' => 'aly', 'AL6G23730' => 'aly', 'AL7G14740' => 'aly', 'AL7G14750' => 'aly', 'AL7G14760' => 'aly', 'AL7G28220' => 'aly', 'AL8G24940' => 'aly', 'Aqoxy3G01665' => 'aox', 'Aqoxy3G02853' => 'aox', 'Aqoxy5G01513' => 'aox', 'Aqoxy5G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8SKA4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ75LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKDA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0LJZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7REX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZP4YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWX7I5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2QKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS0L9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPCD8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q161UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC7XCF' => 'arhy', 'AT1G19100' => 'ath', 'AT4G24970' => 'ath', 'AT4G36270' => 'ath', 'AT4G36280' => 'ath', 'AT4G36290' => 'ath', 'AT5G13130' => 'ath', 'AT5G50780' => 'ath', 'ATR0582G266' => 'atr', 'ATR0661G195' => 'atr', 'ATR1152G031' => 'atr', 'Atru.chr11.2382' => 'acertr', 'Atru.chr12.2337' => 'acertr', 'Atru.chr3.744' => 'acertr', 'Atru.chr6.1870' => 'acertr', 'Atru.chr9.2515' => 'acertr', 'AUR62004120' => 'cqu', 'AUR62005667' => 'cqu', 'AUR62007634' => 'cqu', 'AUR62008186' => 'cqu', 'AUR62008187' => 'cqu', 'AUR62008188' => 'cqu', 'AUR62027954' => 'cqu', 'AUR62028766' => 'cqu', 'AUR62028767' => 'cqu', 'AUR62028768' => 'cqu', 'AUR62028886' => 'cqu', 'AUR62029563' => 'cqu', 'AUR62038832' => 'cqu', 'BcaB01g04149' => 'bca', 'BcaB03g12940' => 'bca', 'BcaB03g13090' => 'bca', 'BcaB03g14466' => 'bca', 'BcaB05g24035' => 'bca', 'BcaC01g06050' => 'bca', 'BcaC04g19148' => 'bca', 'BcaC04g20761' => 'bca', 'BcaC06g32845' => 'bca', 'BcaC07g41274' => 'bca', 'BcaC09g50827' => 'bca', 'BcaNung00741' => 'bca', 'BcaNung00742' => 'bca', 'BcaNung01859' => 'bca', 'BcaNung03985' => 'bca', 'BcaNung03989' => 'bca', 'BcaNung05661' => 'bca', 'BolC1t00257H' => 'bol', 'BolC1t01956H' => 'bol', 'BolC2t06534H' => 'bol', 'BolC3t14334H' => 'bol', 'BolC5t30451H' => 'bol', 'BolC7t45880H' => 'bol', 'BolC7t46586H' => 'bol', 'BolC8t49301H' => 'bol', 'BolC8t51837H' => 'bol', 'BolC9t56822H' => 'bol', 'BolC9t59235H' => 'bol', 'BraA01t00234Z' => 'bra', 'BraA01t01563Z' => 'bra', 'BraA02t05147Z' => 'bra', 'BraA03t10947Z' => 'bra', 'BraA03t14633Z' => 'bra', 'BraA08t35112Z' => 'bra', 'BraA09t41330Z' => 'bra', 'BraA10t44570Z' => 'bra', 'C01p02670' => 'bna', 'C01p20260' => 'bna', 'C02p05890' => 'bna', 'C03p19530' => 'bna', 'C05p17470' => 'bna', 'C07p53900' => 'bna', 'C07p61630' => 'bna', 'C08p16800' => 'bna', 'C08p42810' => 'bna', 'C09p39480' => 'bna', 'C09p63980' => 'bna', 'CAN.G1001.7' => 'can', 'CAN.G1034.55' => 'can', 'CAN.G143.7' => 'can', 'CAN.G3340.1' => 'can', 'CAN.G358.19' => 'can', 'CAN.G373.2' => 'can', 'CAN.G674.16' => 'can', 'CAN.G674.17' => 'can', 'CAN.G674.18' => 'can', 'CAN.G732.2' => 'can', 'CAN.G732.3' => 'can', 'CAN.G993.39' => 'can', 'CANSAT01G2052' => 'cansat', 'CANSAT80G0070' => 'cansat', 'CANSAT80G0483' => 'cansat', 'CANSAT80G0625' => 'cansat', 'CARHR019690' => 'chi', 'CARHR080280' => 'chi', 'CARHR152750' => 'chi', 'CARHR152760' => 'chi', 'CARHR152770' => 'chi', 'CARHR200340' => 'chi', 'CARHR232370' => 'chi', 'CARHR244670' => 'chi', 'CARHR244680' => 'chi', 'CARHR257520' => 'chi', 'Carub.0001s1872' => 'cru', 'Carub.0006s1130' => 'cru', 'Carub.0007s0396' => 'cru', 'Carub.0007s0397' => 'cru', 'Carub.0007s1608' => 'cru', 'Carub.0008s1068' => 'cru', 'Carub.0008s1077' => 'cru', 'Ca_16158_v3' => 'car', 'Ca_17571_v3' => 'car', 'Ca_21936_v3' => 'car', 'Ca_22350_v3' => 'car', 'CBR_g22445' => 'cbr', 'CBR_g26290' => 'cbr', 'Cc04_g09610' => 'ccan', 'Cc04_g12280' => 'ccan', 'Cc07_g10230' => 'ccan', 'CDE02G0093' => 'cde', 'CDE02G0701' => 'cde', 'CDE04G1050' => 'cde', 'CDE05G1833' => 'cde', 'CDE05G3058' => 'cde', 'CDE05G3380' => 'cde', 'CDE06G0536' => 'cde', 'Cfa006923' => 'cfa', 'Cfa009402' => 'cfa', 'Cfa018751' => 'cfa', 'Cfa019164' => 'cfa', 'Cfa022935' => 'cfa', 'Ciclev10019081m.g' => 'ccl', 'Ciclev10025076m.g' => 'ccl', 'Ciclev10030712m.g' => 'ccl', 'Ciclev10033760m.g' => 'ccl', 'CiPaw.05G105600' => 'cil', 'CiPaw.08G136700' => 'cil', 'CiPaw.11G003900' => 'cil', 'CiPaw.11G023700' => 'cil', 'CiPaw.12G003700' => 'cil', 'ClCG06G017100' => 'cla', 'ClCG06G018110' => 'cla', 'ClCG07G008800' => 'cla', 'ClCG07G015330' => 'cla', 'COL.COLO4_13698' => 'col', 'COL.COLO4_16659' => 'col', 'COL.COLO4_21986' => 'col', 'COL.COLO4_24049' => 'col', 'COL.COLO4_29061' => 'col', 'COL.COLO4_29075' => 'col', 'COL.COLO4_30094' => 'col', 'Cpa.g.c33689' => 'cpa', 'Cpa.g.sc108.39' => 'cpa', 'Cpa.g.sc108.41' => 'cpa', 'Cpa.g.sc1163.1' => 'cpa', 'Cpa.g.sc4.155' => 'cpa', 'Cpa.g.sc6.194' => 'cpa', 'CsaV3_1G000340' => 'csa', 'CsaV3_1G001400' => 'csa', 'CsaV3_4G002220' => 'csa', 'CsaV3_4G005370' => 'csa', 'CSS0007487' => 'camsi', 'CSS0008066' => 'camsi', 'CSS0009120' => 'camsi', 'CSS0015512' => 'camsi', 'CSS0022409' => 'camsi', 'CSS0025358' => 'camsi', 'CSS0044547' => 'camsi', 'DCAR_013057' => 'dca', 'DCAR_015058' => 'dca', 'DCAR_016027' => 'dca', 'DCAR_017327' => 'dca', 'DCAR_020743' => 'dca', 'DCAR_026157' => 'dca', 'DCAR_032339' => 'dca', 'DCAR_032340' => 'dca', 'Dinv11200' => 'din', 'Dinv11201' => 'din', 'Dinv20631' => 'din', 'Dinv23182' => 'din', 'Dinv33466' => 'din', 'Dinv33583' => 'din', 'Dinv38565' => 'din', 'Duzib068G0200' => 'dzi', 'Duzib147G0132' => 'dzi', 'Duzib147G0635' => 'dzi', 'Duzib205G1670' => 'dzi', 'Duzib251G0606' => 'dzi', 'ECA232G3336' => 'eca', 'ECA232G3763' => 'eca', 'ECA232G4845' => 'eca', 'ECA234G1607' => 'eca', 'ECA246G0932' => 'eca', 'ECA247G0781' => 'eca', 'ECA247G1932' => 'eca', 'ECA247G2079' => 'eca', 'ECA247G3338' => 'eca', 'ECA247G4115' => 'eca', 'EL10Ac3g06552' => 'bvu', 'EL10Ac5g10721' => 'bvu', 'EL10Ac5g10722' => 'bvu', 'EL10Ac5g10723' => 'bvu', 'EL10Ac5g11361' => 'bvu', 'EL10Ac6g13553' => 'bvu', 'EL10As8g23872' => 'bvu', 'Eucgr.B00250' => 'egr', 'Eucgr.B00251' => 'egr', 'Eucgr.B03533' => 'egr', 'Eucgr.I02381' => 'egr', 'Eucgr.K02700' => 'egr', 'FAN02G0174' => 'fan', 'FAN02G3146' => 'fan', 'FAN04G1672' => 'fan', 'FAN04G2273' => 'fan', 'FAN05G2791' => 'fan', 'FAN05G4035' => 'fan', 'FAN07G0834' => 'fan', 'FAN08G1198' => 'fan', 'FAN09G4182' => 'fan', 'FAN12G0496' => 'fan', 'FAN13G1027' => 'fan', 'FAN13G2951' => 'fan', 'FAN14G0705' => 'fan', 'FAN14G0720' => 'fan', 'FAN17G0201' => 'fan', 'FAN17G2665' => 'fan', 'FAN18G1456' => 'fan', 'FAN18G1525' => 'fan', 'FAN18G3500' => 'fan', 'FAN28G2670' => 'fan', 'FvH4_1g12391' => 'fve', 'FvH4_4g23220' => 'fve', 'FvH4_5g08810' => 'fve', 'FvH4_5g28960' => 'fve', 'FvH4_6g42820' => 'fve', 'FvH4_6g51110' => 'fve', 'Glyma.02G051802' => 'gma', 'Glyma.04G185300' => 'gma', 'Glyma.05G202900' => 'gma', 'Glyma.08G010300' => 'gma', 'Glyma.16G131900' => 'gma', 'Glyma.17G087900' => 'gma', 'Gohir.A07G048600' => 'ghi', 'Gohir.A11G179000' => 'ghi', 'Gohir.A12G140900' => 'ghi', 'Gohir.A12G140950' => 'ghi', 'Gohir.A12G191700' => 'ghi', 'Gohir.A13G086300' => 'ghi', 'Gohir.D07G052900' => 'ghi', 'Gohir.D11G186600' => 'ghi', 'Gohir.D12G145575' => 'ghi', 'Gohir.D12G145650' => 'ghi', 'Gohir.D12G145725' => 'ghi', 'Gohir.D12G194050' => 'ghi', 'Gohir.D13G091800' => 'ghi', 'Gorai.001G055900' => 'gra', 'Gorai.007G198400' => 'gra', 'Gorai.008G157000' => 'gra', 'Gorai.008G157100' => 'gra', 'Gorai.008G208700' => 'gra', 'Gorai.010G138700' => 'gra', 'GSVIVG01000977001' => 'vvi', 'GSVIVG01007708001' => 'vvi', 'GSVIVG01008587001' => 'vvi', 'GSVIVG01018849001' => 'vvi', 'GSVIVG01032432001' => 'vvi', 'HanXRQChr02g0034131' => 'han', 'HanXRQChr02g0035981' => 'han', 'HanXRQChr02g0035991' => 'han', 'HanXRQChr05g0155611' => 'han', 'HanXRQChr05g0155621' => 'han', 'HanXRQChr08g0236501' => 'han', 'HanXRQChr09g0261321' => 'han', 'HanXRQChr09g0272081' => 'han', 'HanXRQChr10g0310741' => 'han', 'HanXRQChr11g0325591' => 'han', 'HanXRQChr12g0385691' => 'han', 'HanXRQChr13g0387801' => 'han', 'HanXRQChr15g0463011' => 'han', 'Haze_03826' => 'cav', 'Haze_03827' => 'cav', 'Haze_07183' => 'cav', 'Haze_07537' => 'cav', 'Haze_07539' => 'cav', 'Haze_12461' => 'cav', 'Haze_16115' => 'cav', 'Haze_16808' => 'cav', 'Haze_18531' => 'cav', 'Hma1.2p1_0046F.1_g026700' => 'hma', 'Hma1.2p1_0046F.1_g026710' => 'hma', 'Hma1.2p1_0168F.1_g074340' => 'hma', 'Hma1.2p1_0266F.1_g107030' => 'hma', 'Hma1.2p1_0266F.1_g107060' => 'hma', 'Hma1.2p1_0275F.1_g110510' => 'hma', 'Hma1.2p1_0592F.1_g185490' => 'hma', 'Hma1.2p1_0592F.1_g185500' => 'hma', 'Hma1.2p1_0592F.1_g185510' => 'hma', 'Hma1.2p1_0592F.1_g185520' => 'hma', 'Hma1.2p1_0592F.1_g185530' => 'hma', 'Hma1.2p1_0818F.1_g223450' => 'hma', 'HPP92_009708' => 'vpl', 'HPP92_009793' => 'vpl', 'HPP92_009796' => 'vpl', 'HPP92_009797' => 'vpl', 'HPP92_014940' => 'vpl', 'HPP92_014988' => 'vpl', 'Hund02463' => 'sun', 'Hund02760' => 'sun', 'Hund05071' => 'sun', 'Hund10108' => 'sun', 'Hund11204' => 'sun', 'Hund14016' => 'sun', 'Hund16464' => 'sun', 'Lalb_Chr09g0333391' => 'lal', 'Lalb_Chr11g0070461' => 'lal', 'Lalb_Chr12g0201671' => 'lal', 'Lalb_Chr13g0297161' => 'lal', 'Lj1g0002823' => 'lja', 'Lj3C1074T6' => 'lonja', 'Lj4A212T28' => 'lonja', 'Lj4g0005516' => 'lja', 'Lj4g0013705' => 'lja', 'Lj4g0027865' => 'lja', 'Lj5C92G16' => 'lonja', 'Lj5C92T12' => 'lonja', 'Lj7C596T3' => 'lonja', 'Lj9A446G59' => 'lonja', 'Lj9A482G21' => 'lonja', 'Lsat_1_v5_gn_1_28261' => 'lsa', 'Lsat_1_v5_gn_1_28281' => 'lsa', 'Lsat_1_v5_gn_1_32721' => 'lsa', 'Lsat_1_v5_gn_4_151760' => 'lsa', 'Lsat_1_v5_gn_4_2120' => 'lsa', 'Lsat_1_v5_gn_4_75761' => 'lsa', 'Lsat_1_v5_gn_5_10920' => 'lsa', 'Manes.02G099900' => 'mes', 'Manes.11G096200' => 'mes', 'Manes.12G007200' => 'mes', 'Manes.14G048300' => 'mes', 'Manes.17G114700' => 'mes', 'Mapoly0002s0070' => 'mpo', 'Mapoly0029s0099' => 'mpo', 'MBI07_g24742_MAGBIO' => 'mbi', 'MBI10_g27988_MAGBIO' => 'mbi', 'MBI11_g13057_MAGBIO' => 'mbi', 'MD02G1137200' => 'mdo', 'MD06G1137200' => 'mdo', 'MD07G1122300' => 'mdo', 'MD09G1078200' => 'mdo', 'MD13G1123700' => 'mdo', 'MD14G1151900' => 'mdo', 'MD17G1030900' => 'mdo', 'MD17G1068200' => 'mdo', 'MD17G1068600' => 'mdo', 'Medtr3g077540' => 'mtr', 'Medtr4g105530' => 'mtr', 'Medtr8g076580' => 'mtr', 'Medtr8g076590' => 'mtr', 'Medtr8g096410' => 'mtr', 'MELO3C016411.2' => 'cme', 'MELO3C017780.2' => 'cme', 'MELO3C022560.2' => 'cme', 'MELO3C026187.2' => 'cme', 'MELO3C026286.2' => 'cme', 'MELO3C032854.2' => 'cme', 'Migut.H02495' => 'egut', 'Migut.I00561' => 'egut', 'Migut.K01015' => 'egut', 'Migut.K01016' => 'egut', 'Migut.L00743' => 'egut', 'Migut.L00744' => 'egut', 'Migut.L00746' => 'egut', 'Migut.L00798' => 'egut', 'Migut.L00799' => 'egut', 'Migut.N02096' => 'egut', 'MSTRG.11259' => 'ama', 'MSTRG.23142' => 'ama', 'MSTRG.2499' => 'ama', 'Nitab4.5_0000003g0730' => 'nta', 'Nitab4.5_0000137g0020' => 'nta', 'Nitab4.5_0000721g0210' => 'nta', 'Nitab4.5_0000723g0050' => 'nta', 'Nitab4.5_0000913g0070' => 'nta', 'Nitab4.5_0001332g0040' => 'nta', 'Nitab4.5_0001771g0050' => 'nta', 'Nitab4.5_0001918g0050' => 'nta', 'Nitab4.5_0002686g0030' => 'nta', 'Nitab4.5_0003156g0020' => 'nta', 'Nitab4.5_0003383g0040' => 'nta', 'Nitab4.5_0003918g0010' => 'nta', 'Nitab4.5_0006760g0010' => 'nta', 'Nn1g05981' => 'nnu', 'Nn1g06288' => 'nnu', 'Nn3g16371' => 'nnu', 'Nn3g16786' => 'nnu', 'Nn4g22232' => 'nnu', 'Oeu005144.1' => 'oeu', 'Oeu005145.1' => 'oeu', 'Oeu011348.1' => 'oeu', 'Oeu016415.1' => 'oeu', 'Oeu023501.1' => 'oeu', 'Oeu044473.1' => 'oeu', 'Oeu048892.2' => 'oeu', 'Os01g0549200' => 'osa', 'Os02g0469300' => 'osa', 'Os04g0311100' => 'osa', 'Os06g0474900' => 'osa', 'Os10g0181700' => 'osa', 'Os11g0454800' => 'osa', 'Peaxi162Scf00037g00714' => 'pax', 'Peaxi162Scf00084g01217' => 'pax', 'Peaxi162Scf00257g00217' => 'pax', 'Peaxi162Scf00516g00215' => 'pax', 'Peaxi162Scf00689g00123' => 'pax', 'PGR044G2719' => 'pgr', 'PGR083G1360' => 'pgr', 'PGR102G2849' => 'pgr', 'PGR119G2534' => 'pgr', 'PGSC0003DMG400003538' => 'stu', 'PGSC0003DMG400028138' => 'stu', 'PGSC0003DMG400031732' => 'stu', 'PGSC0003DMG400038165' => 'stu', 'Phvul.002G284600' => 'pvu', 'Phvul.003G258200' => 'pvu', 'Phvul.009G176500' => 'pvu', 'Potri.003G167201' => 'ptr', 'Potri.005G118400' => 'ptr', 'Potri.012G089000' => 'ptr', 'Potri.012G102800' => 'ptr', 'Potri.015G079400' => 'ptr', 'Potri.015G100900' => 'ptr', 'Pp3c14_9810' => 'ppa', 'Pp3c15_10450' => 'ppa', 'Pp3c20_19150' => 'ppa', 'Pp3c23_12740' => 'ppa', 'Pp3c23_6310' => 'ppa', 'Pp3c24_3720' => 'ppa', 'Pp3c27_2580' => 'ppa', 'Pp3c9_8990' => 'ppa', 'PRCOL_00002854' => 'pco', 'Prupe.1G221200' => 'ppe', 'Prupe.3G289000' => 'ppe', 'Prupe.5G147000' => 'ppe', 'Prupe.6G157300' => 'ppe', 'Prupe.7G163400' => 'ppe', 'Psat0s2177g0040' => 'psa', 'Psat3g174760' => 'psa', 'Psat3g192160' => 'psa', 'Psat4g058520' => 'psa', 'Psat4g096840' => 'psa', 'Psat7g037320' => 'psa', 'PSO017G1274' => 'pso', 'PSO017G5166' => 'pso', 'PSO063G4558' => 'pso', 'PSO170G4458' => 'pso', 'PSO170G5005' => 'pso', 'PSO210G6156' => 'pso', 'PSO210G6635' => 'pso', 'PSO210G7397' => 'pso', 'PSO210G7700' => 'pso', 'PSO455G0035' => 'pso', 'PSO455G0180' => 'pso', 'PSO478G4515' => 'pso', 'PSO832G1305' => 'pso', 'PSO832G3489' => 'pso', 'QL02p075247' => 'qlo', 'QL03p051148' => 'qlo', 'QL05p010313' => 'qlo', 'QL06p034627' => 'qlo', 'QL10p001889' => 'qlo', 'QL10p010846' => 'qlo', 'RcHm_v2.0_Chr1g0350621' => 'rch', 'RcHm_v2.0_Chr1g0350641' => 'rch', 'RcHm_v2.0_Chr2g0092891' => 'rch', 'RcHm_v2.0_Chr2g0100251' => 'rch', 'RcHm_v2.0_Chr2g0158661' => 'rch', 'RcHm_v2.0_Chr2g0172741' => 'rch', 'RcHm_v2.0_Chr4g0429571' => 'rch', 'RcHm_v2.0_Chr5g0042471' => 'rch', 'RcHm_v2.0_Chr7g0189451' => 'rch', 'Rhsim08G0052000' => 'rsi', 'Rhsim08G0174400' => 'rsi', 'Rhsim08G0193200' => 'rsi', 'Rhsim10G0214800' => 'rsi', 'Rhsim10G0214900' => 'rsi', 'Rhsim10G0215000' => 'rsi', 'Rhsim12G0022900' => 'rsi', 'Rhsim12G0177500' => 'rsi', 'Rhsim12G0177700' => 'rsi', 'Sabra03G0122600' => 'sbr', 'Sabra05G0097400' => 'sbr', 'Sabra12G0064100' => 'sbr', 'Sabra15G0121300' => 'sbr', 'SalBow2G0642' => 'sbo', 'SalBow5G2667' => 'sbo', 'SalBow5G4873' => 'sbo', 'SalBow8G2395' => 'sbo', 'Sc03g0003290' => 'sci', 'Sc10g0010130' => 'sci', 'Sc22g0003650' => 'sci', 'Sed0001603' => 'sed', 'Sed0004259' => 'sed', 'Sed0006789' => 'sed', 'Sed0011838' => 'sed', 'Sed0012964' => 'sed', 'Sed0016383' => 'sed', 'Sed0019010' => 'sed', 'Sed0020188' => 'sed', 'SEGI_04702' => 'sgi', 'SEGI_17231' => 'sgi', 'SEGI_18877' => 'sgi', 'SEGI_25196' => 'sgi', 'SEGI_25515' => 'sgi', 'SEGI_28445' => 'sgi', 'SEGI_37452' => 'sgi', 'SGA_v2.0_scaffold188G40336' => 'sas', 'SGA_v2.0_scaffold228G43247' => 'sas', 'SGA_v2.0_scaffold280G46853' => 'sas', 'SGA_v2.0_scaffold34G13808' => 'sas', 'SGA_v2.0_scaffold40G15576' => 'sas', 'SGA_v2.0_scaffold611G53188' => 'sas', 'SGA_v2.0_scaffold78G25461' => 'sas', 'SGA_v2.0_scaffold90G27888' => 'sas', 'SHI08601' => 'shi', 'SHI08606' => 'shi', 'SHI17117' => 'shi', 'SHI17119' => 'shi', 'SMO118G0201' => 'smo', 'SMO169G0247' => 'smo', 'SMO176G0006' => 'smo', 'SMO176G0015' => 'smo', 'SMO202G0006' => 'smo', 'SMO240G0050' => 'smo', 'SMO286G0009' => 'smo', 'SMO338G0033' => 'smo', 'SMO356G0533' => 'smo', 'SMO364G0382' => 'smo', 'SMO367G0166' => 'smo', 'SMO367G1098' => 'smo', 'Solyc01g009920.3' => 'sly', 'Solyc01g099300.3' => 'sly', 'Solyc02g084700.3' => 'sly', 'Solyc03g097520.3' => 'sly', 'Solyc06g071580.3' => 'sly', 'Solyc10g081760.3' => 'sly', 'Sopen01g005480' => 'spe', 'Sopen01g042850' => 'spe', 'Sopen02g029370' => 'spe', 'Sopen03g028280' => 'spe', 'Sopen06g027870' => 'spe', 'Sopen10g032270' => 'spe', 'Sp5g18180' => 'spa', 'Sp6g12880' => 'spa', 'Sp6g30850' => 'spa', 'Sp7g22960' => 'spa', 'Sp7g34010' => 'spa', 'SpUn1326_0010' => 'spa', 'TAR371G0242' => 'tar', 'TAR622G0638' => 'tar', 'TAR628G1548' => 'tar', 'TAR629G1079' => 'tar', 'TAR629G3413' => 'tar', 'THA.LOC104804249' => 'tha', 'THA.LOC104808315' => 'tha', 'THA.LOC104809238' => 'tha', 'THA.LOC104825484' => 'tha', 'Thecc.01G025500' => 'tca', 'Thecc.03G015800' => 'tca', 'Thecc.03G018000' => 'tca', 'Thecc.03G134800' => 'tca', 'Thecc.04G014700' => 'tca', 'Thhalv10006991m.g' => 'esa', 'Thhalv10012707m.g' => 'esa', 'Thhalv10015739m.g' => 'esa', 'Thhalv10024553m.g' => 'esa', 'Thhalv10024673m.g' => 'esa', 'Thhalv10029187m.g' => 'esa', 'TPR.G12971' => 'tpr', 'TPR.G29396' => 'tpr', 'TPR.G33376' => 'tpr', 'TPR.G35508' => 'tpr', 'TPR.G35516' => 'tpr', 'TPR.G37317' => 'tpr', 'TPR.G37389' => 'tpr', 'TPR.G37523' => 'tpr', 'TPR.G559' => 'tpr', 'TWI14G0070' => 'twi', 'TWI14G0729' => 'twi', 'TWI18G0596' => 'twi', 'TWI39G0780' => 'twi', 'TWI39G0850' => 'twi', 'TWI73G1052' => 'twi', 'unitig_52.g17485' => 'ugi', 'unitig_61.g26355' => 'ugi', 'vmacro01040' => 'vma', 'vmacro16731' => 'vma', 'vmacro18270' => 'vma', 'vmacro19142' => 'vma', 'vmacro19407' => 'vma', 'vmacro19408' => 'vma', 'vmacro21899' => 'vma', 'vmacro21900' => 'vma', 'vmacro21901' => 'vma', 'VMungo0251G0490' => 'vmu', 'VMungo0251G1748' => 'vmu', 'VMungo1309G0421' => 'vmu', 'Zm00001eb086500' => 'zma', 'Zm00001eb150680' => 'zma', 'Zm00001eb162330' => 'zma', 'Zm00001eb203130' => 'zma', 'Zm00001eb369480' => 'zma', 'Zm00001eb382340' => 'zma', 'Zm00001eb416360' => 'zma' ) $gf_id = 'HOM05D000902' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000902' ) $data_identifier = 'HOM05D000902' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 13, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 10, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 6, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 9, 'hma' => (int) 12, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 4, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 6, 'ppa' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 6, 'rch' => (int) 9, 'rsi' => (int) 9, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 12, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 3, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416360' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000902', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '663', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02470' => 'bna', 'A01p16260' => 'bna', 'A02p01680' => 'bna', 'A03p16600' => 'bna', 'A03p55660' => 'bna', 'A03p64160' => 'bna', 'A03p64170' => 'bna', 'A08p31900' => 'bna', 'A09p59530' => 'bna', 'A10p08230' => 'bna', 'A10p25090' => 'bna', 'Aa31LG3G7100' => 'aar', 'Aa31LG3G7110' => 'aar', 'Aa31LG6G13160' => 'aar', 'Aa31LG7G10770' => 'aar', 'Aa31LG7G3830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2723' => 'aag', 'Actinidia08045' => 'ach', 'Actinidia08888' => 'ach', 'Actinidia18333' => 'ach', 'Actinidia19334' => 'ach', 'Actinidia25552' => 'ach', 'Actinidia26089' => 'ach', 'Actinidia30615' => 'ach', 'Actinidia30616' => 'ach', 'Actinidia33083' => 'ach', 'Actinidia35762' => 'ach', 'Ah.02g110620' => 'amhyb', 'Ah.11g046390' => 'amhyb', 'AL1G31670' => 'aly', 'AL6G23730' => 'aly', 'AL7G14740' => 'aly', 'AL7G14750' => 'aly', 'AL7G14760' => 'aly', 'AL7G28220' => 'aly', 'AL8G24940' => 'aly', 'Aqoxy3G01665' => 'aox', 'Aqoxy3G02853' => 'aox', 'Aqoxy5G01513' => 'aox', 'Aqoxy5G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8SKA4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ75LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKDA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0LJZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7REX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZP4YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWX7I5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2QKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS0L9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPCD8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q161UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC7XCF' => 'arhy', 'AT1G19100' => 'ath', 'AT4G24970' => 'ath', 'AT4G36270' => 'ath', 'AT4G36280' => 'ath', 'AT4G36290' => 'ath', 'AT5G13130' => 'ath', 'AT5G50780' => 'ath', 'ATR0582G266' => 'atr', 'ATR0661G195' => 'atr', 'ATR1152G031' => 'atr', 'Atru.chr11.2382' => 'acertr', 'Atru.chr12.2337' => 'acertr', 'Atru.chr3.744' => 'acertr', 'Atru.chr6.1870' => 'acertr', 'Atru.chr9.2515' => 'acertr', 'AUR62004120' => 'cqu', 'AUR62005667' => 'cqu', 'AUR62007634' => 'cqu', 'AUR62008186' => 'cqu', 'AUR62008187' => 'cqu', 'AUR62008188' => 'cqu', 'AUR62027954' => 'cqu', 'AUR62028766' => 'cqu', 'AUR62028767' => 'cqu', 'AUR62028768' => 'cqu', 'AUR62028886' => 'cqu', 'AUR62029563' => 'cqu', 'AUR62038832' => 'cqu', 'BcaB01g04149' => 'bca', 'BcaB03g12940' => 'bca', 'BcaB03g13090' => 'bca', 'BcaB03g14466' => 'bca', 'BcaB05g24035' => 'bca', 'BcaC01g06050' => 'bca', 'BcaC04g19148' => 'bca', 'BcaC04g20761' => 'bca', 'BcaC06g32845' => 'bca', 'BcaC07g41274' => 'bca', 'BcaC09g50827' => 'bca', 'BcaNung00741' => 'bca', 'BcaNung00742' => 'bca', 'BcaNung01859' => 'bca', 'BcaNung03985' => 'bca', 'BcaNung03989' => 'bca', 'BcaNung05661' => 'bca', 'BolC1t00257H' => 'bol', 'BolC1t01956H' => 'bol', 'BolC2t06534H' => 'bol', 'BolC3t14334H' => 'bol', 'BolC5t30451H' => 'bol', 'BolC7t45880H' => 'bol', 'BolC7t46586H' => 'bol', 'BolC8t49301H' => 'bol', 'BolC8t51837H' => 'bol', 'BolC9t56822H' => 'bol', 'BolC9t59235H' => 'bol', 'BraA01t00234Z' => 'bra', 'BraA01t01563Z' => 'bra', 'BraA02t05147Z' => 'bra', 'BraA03t10947Z' => 'bra', 'BraA03t14633Z' => 'bra', 'BraA08t35112Z' => 'bra', 'BraA09t41330Z' => 'bra', 'BraA10t44570Z' => 'bra', 'C01p02670' => 'bna', 'C01p20260' => 'bna', 'C02p05890' => 'bna', 'C03p19530' => 'bna', 'C05p17470' => 'bna', 'C07p53900' => 'bna', 'C07p61630' => 'bna', 'C08p16800' => 'bna', 'C08p42810' => 'bna', 'C09p39480' => 'bna', 'C09p63980' => 'bna', 'CAN.G1001.7' => 'can', 'CAN.G1034.55' => 'can', 'CAN.G143.7' => 'can', 'CAN.G3340.1' => 'can', 'CAN.G358.19' => 'can', 'CAN.G373.2' => 'can', 'CAN.G674.16' => 'can', 'CAN.G674.17' => 'can', 'CAN.G674.18' => 'can', 'CAN.G732.2' => 'can', 'CAN.G732.3' => 'can', 'CAN.G993.39' => 'can', 'CANSAT01G2052' => 'cansat', 'CANSAT80G0070' => 'cansat', 'CANSAT80G0483' => 'cansat', 'CANSAT80G0625' => 'cansat', 'CARHR019690' => 'chi', 'CARHR080280' => 'chi', 'CARHR152750' => 'chi', 'CARHR152760' => 'chi', 'CARHR152770' => 'chi', 'CARHR200340' => 'chi', 'CARHR232370' => 'chi', 'CARHR244670' => 'chi', 'CARHR244680' => 'chi', 'CARHR257520' => 'chi', 'Carub.0001s1872' => 'cru', 'Carub.0006s1130' => 'cru', 'Carub.0007s0396' => 'cru', 'Carub.0007s0397' => 'cru', 'Carub.0007s1608' => 'cru', 'Carub.0008s1068' => 'cru', 'Carub.0008s1077' => 'cru', 'Ca_16158_v3' => 'car', 'Ca_17571_v3' => 'car', 'Ca_21936_v3' => 'car', 'Ca_22350_v3' => 'car', 'CBR_g22445' => 'cbr', 'CBR_g26290' => 'cbr', 'Cc04_g09610' => 'ccan', 'Cc04_g12280' => 'ccan', 'Cc07_g10230' => 'ccan', 'CDE02G0093' => 'cde', 'CDE02G0701' => 'cde', 'CDE04G1050' => 'cde', 'CDE05G1833' => 'cde', 'CDE05G3058' => 'cde', 'CDE05G3380' => 'cde', 'CDE06G0536' => 'cde', 'Cfa006923' => 'cfa', 'Cfa009402' => 'cfa', 'Cfa018751' => 'cfa', 'Cfa019164' => 'cfa', 'Cfa022935' => 'cfa', 'Ciclev10019081m.g' => 'ccl', 'Ciclev10025076m.g' => 'ccl', 'Ciclev10030712m.g' => 'ccl', 'Ciclev10033760m.g' => 'ccl', 'CiPaw.05G105600' => 'cil', 'CiPaw.08G136700' => 'cil', 'CiPaw.11G003900' => 'cil', 'CiPaw.11G023700' => 'cil', 'CiPaw.12G003700' => 'cil', 'ClCG06G017100' => 'cla', 'ClCG06G018110' => 'cla', 'ClCG07G008800' => 'cla', 'ClCG07G015330' => 'cla', 'COL.COLO4_13698' => 'col', 'COL.COLO4_16659' => 'col', 'COL.COLO4_21986' => 'col', 'COL.COLO4_24049' => 'col', 'COL.COLO4_29061' => 'col', 'COL.COLO4_29075' => 'col', 'COL.COLO4_30094' => 'col', 'Cpa.g.c33689' => 'cpa', 'Cpa.g.sc108.39' => 'cpa', 'Cpa.g.sc108.41' => 'cpa', 'Cpa.g.sc1163.1' => 'cpa', 'Cpa.g.sc4.155' => 'cpa', 'Cpa.g.sc6.194' => 'cpa', 'CsaV3_1G000340' => 'csa', 'CsaV3_1G001400' => 'csa', 'CsaV3_4G002220' => 'csa', 'CsaV3_4G005370' => 'csa', 'CSS0007487' => 'camsi', 'CSS0008066' => 'camsi', 'CSS0009120' => 'camsi', 'CSS0015512' => 'camsi', 'CSS0022409' => 'camsi', 'CSS0025358' => 'camsi', 'CSS0044547' => 'camsi', 'DCAR_013057' => 'dca', 'DCAR_015058' => 'dca', 'DCAR_016027' => 'dca', 'DCAR_017327' => 'dca', 'DCAR_020743' => 'dca', 'DCAR_026157' => 'dca', 'DCAR_032339' => 'dca', 'DCAR_032340' => 'dca', 'Dinv11200' => 'din', 'Dinv11201' => 'din', 'Dinv20631' => 'din', 'Dinv23182' => 'din', 'Dinv33466' => 'din', 'Dinv33583' => 'din', 'Dinv38565' => 'din', 'Duzib068G0200' => 'dzi', 'Duzib147G0132' => 'dzi', 'Duzib147G0635' => 'dzi', 'Duzib205G1670' => 'dzi', 'Duzib251G0606' => 'dzi', 'ECA232G3336' => 'eca', 'ECA232G3763' => 'eca', 'ECA232G4845' => 'eca', 'ECA234G1607' => 'eca', 'ECA246G0932' => 'eca', 'ECA247G0781' => 'eca', 'ECA247G1932' => 'eca', 'ECA247G2079' => 'eca', 'ECA247G3338' => 'eca', 'ECA247G4115' => 'eca', 'EL10Ac3g06552' => 'bvu', 'EL10Ac5g10721' => 'bvu', 'EL10Ac5g10722' => 'bvu', 'EL10Ac5g10723' => 'bvu', 'EL10Ac5g11361' => 'bvu', 'EL10Ac6g13553' => 'bvu', 'EL10As8g23872' => 'bvu', 'Eucgr.B00250' => 'egr', 'Eucgr.B00251' => 'egr', 'Eucgr.B03533' => 'egr', 'Eucgr.I02381' => 'egr', 'Eucgr.K02700' => 'egr', 'FAN02G0174' => 'fan', 'FAN02G3146' => 'fan', 'FAN04G1672' => 'fan', 'FAN04G2273' => 'fan', 'FAN05G2791' => 'fan', 'FAN05G4035' => 'fan', 'FAN07G0834' => 'fan', 'FAN08G1198' => 'fan', 'FAN09G4182' => 'fan', 'FAN12G0496' => 'fan', 'FAN13G1027' => 'fan', 'FAN13G2951' => 'fan', 'FAN14G0705' => 'fan', 'FAN14G0720' => 'fan', 'FAN17G0201' => 'fan', 'FAN17G2665' => 'fan', 'FAN18G1456' => 'fan', 'FAN18G1525' => 'fan', 'FAN18G3500' => 'fan', 'FAN28G2670' => 'fan', 'FvH4_1g12391' => 'fve', 'FvH4_4g23220' => 'fve', 'FvH4_5g08810' => 'fve', 'FvH4_5g28960' => 'fve', 'FvH4_6g42820' => 'fve', 'FvH4_6g51110' => 'fve', 'Glyma.02G051802' => 'gma', 'Glyma.04G185300' => 'gma', 'Glyma.05G202900' => 'gma', 'Glyma.08G010300' => 'gma', 'Glyma.16G131900' => 'gma', 'Glyma.17G087900' => 'gma', 'Gohir.A07G048600' => 'ghi', 'Gohir.A11G179000' => 'ghi', 'Gohir.A12G140900' => 'ghi', 'Gohir.A12G140950' => 'ghi', 'Gohir.A12G191700' => 'ghi', 'Gohir.A13G086300' => 'ghi', 'Gohir.D07G052900' => 'ghi', 'Gohir.D11G186600' => 'ghi', 'Gohir.D12G145575' => 'ghi', 'Gohir.D12G145650' => 'ghi', 'Gohir.D12G145725' => 'ghi', 'Gohir.D12G194050' => 'ghi', 'Gohir.D13G091800' => 'ghi', 'Gorai.001G055900' => 'gra', 'Gorai.007G198400' => 'gra', 'Gorai.008G157000' => 'gra', 'Gorai.008G157100' => 'gra', 'Gorai.008G208700' => 'gra', 'Gorai.010G138700' => 'gra', 'GSVIVG01000977001' => 'vvi', 'GSVIVG01007708001' => 'vvi', 'GSVIVG01008587001' => 'vvi', 'GSVIVG01018849001' => 'vvi', 'GSVIVG01032432001' => 'vvi', 'HanXRQChr02g0034131' => 'han', 'HanXRQChr02g0035981' => 'han', 'HanXRQChr02g0035991' => 'han', 'HanXRQChr05g0155611' => 'han', 'HanXRQChr05g0155621' => 'han', 'HanXRQChr08g0236501' => 'han', 'HanXRQChr09g0261321' => 'han', 'HanXRQChr09g0272081' => 'han', 'HanXRQChr10g0310741' => 'han', 'HanXRQChr11g0325591' => 'han', 'HanXRQChr12g0385691' => 'han', 'HanXRQChr13g0387801' => 'han', 'HanXRQChr15g0463011' => 'han', 'Haze_03826' => 'cav', 'Haze_03827' => 'cav', 'Haze_07183' => 'cav', 'Haze_07537' => 'cav', 'Haze_07539' => 'cav', 'Haze_12461' => 'cav', 'Haze_16115' => 'cav', 'Haze_16808' => 'cav', 'Haze_18531' => 'cav', 'Hma1.2p1_0046F.1_g026700' => 'hma', 'Hma1.2p1_0046F.1_g026710' => 'hma', 'Hma1.2p1_0168F.1_g074340' => 'hma', 'Hma1.2p1_0266F.1_g107030' => 'hma', 'Hma1.2p1_0266F.1_g107060' => 'hma', 'Hma1.2p1_0275F.1_g110510' => 'hma', 'Hma1.2p1_0592F.1_g185490' => 'hma', 'Hma1.2p1_0592F.1_g185500' => 'hma', 'Hma1.2p1_0592F.1_g185510' => 'hma', 'Hma1.2p1_0592F.1_g185520' => 'hma', 'Hma1.2p1_0592F.1_g185530' => 'hma', 'Hma1.2p1_0818F.1_g223450' => 'hma', 'HPP92_009708' => 'vpl', 'HPP92_009793' => 'vpl', 'HPP92_009796' => 'vpl', 'HPP92_009797' => 'vpl', 'HPP92_014940' => 'vpl', 'HPP92_014988' => 'vpl', 'Hund02463' => 'sun', 'Hund02760' => 'sun', 'Hund05071' => 'sun', 'Hund10108' => 'sun', 'Hund11204' => 'sun', 'Hund14016' => 'sun', 'Hund16464' => 'sun', 'Lalb_Chr09g0333391' => 'lal', 'Lalb_Chr11g0070461' => 'lal', 'Lalb_Chr12g0201671' => 'lal', 'Lalb_Chr13g0297161' => 'lal', 'Lj1g0002823' => 'lja', 'Lj3C1074T6' => 'lonja', 'Lj4A212T28' => 'lonja', 'Lj4g0005516' => 'lja', 'Lj4g0013705' => 'lja', 'Lj4g0027865' => 'lja', 'Lj5C92G16' => 'lonja', 'Lj5C92T12' => 'lonja', 'Lj7C596T3' => 'lonja', 'Lj9A446G59' => 'lonja', 'Lj9A482G21' => 'lonja', 'Lsat_1_v5_gn_1_28261' => 'lsa', 'Lsat_1_v5_gn_1_28281' => 'lsa', 'Lsat_1_v5_gn_1_32721' => 'lsa', 'Lsat_1_v5_gn_4_151760' => 'lsa', 'Lsat_1_v5_gn_4_2120' => 'lsa', 'Lsat_1_v5_gn_4_75761' => 'lsa', 'Lsat_1_v5_gn_5_10920' => 'lsa', 'Manes.02G099900' => 'mes', 'Manes.11G096200' => 'mes', 'Manes.12G007200' => 'mes', 'Manes.14G048300' => 'mes', 'Manes.17G114700' => 'mes', 'Mapoly0002s0070' => 'mpo', 'Mapoly0029s0099' => 'mpo', 'MBI07_g24742_MAGBIO' => 'mbi', 'MBI10_g27988_MAGBIO' => 'mbi', 'MBI11_g13057_MAGBIO' => 'mbi', 'MD02G1137200' => 'mdo', 'MD06G1137200' => 'mdo', 'MD07G1122300' => 'mdo', 'MD09G1078200' => 'mdo', 'MD13G1123700' => 'mdo', 'MD14G1151900' => 'mdo', 'MD17G1030900' => 'mdo', 'MD17G1068200' => 'mdo', 'MD17G1068600' => 'mdo', 'Medtr3g077540' => 'mtr', 'Medtr4g105530' => 'mtr', 'Medtr8g076580' => 'mtr', 'Medtr8g076590' => 'mtr', 'Medtr8g096410' => 'mtr', 'MELO3C016411.2' => 'cme', 'MELO3C017780.2' => 'cme', 'MELO3C022560.2' => 'cme', 'MELO3C026187.2' => 'cme', 'MELO3C026286.2' => 'cme', 'MELO3C032854.2' => 'cme', 'Migut.H02495' => 'egut', 'Migut.I00561' => 'egut', 'Migut.K01015' => 'egut', 'Migut.K01016' => 'egut', 'Migut.L00743' => 'egut', 'Migut.L00744' => 'egut', 'Migut.L00746' => 'egut', 'Migut.L00798' => 'egut', 'Migut.L00799' => 'egut', 'Migut.N02096' => 'egut', 'MSTRG.11259' => 'ama', 'MSTRG.23142' => 'ama', 'MSTRG.2499' => 'ama', 'Nitab4.5_0000003g0730' => 'nta', 'Nitab4.5_0000137g0020' => 'nta', 'Nitab4.5_0000721g0210' => 'nta', 'Nitab4.5_0000723g0050' => 'nta', 'Nitab4.5_0000913g0070' => 'nta', 'Nitab4.5_0001332g0040' => 'nta', 'Nitab4.5_0001771g0050' => 'nta', 'Nitab4.5_0001918g0050' => 'nta', 'Nitab4.5_0002686g0030' => 'nta', 'Nitab4.5_0003156g0020' => 'nta', 'Nitab4.5_0003383g0040' => 'nta', 'Nitab4.5_0003918g0010' => 'nta', 'Nitab4.5_0006760g0010' => 'nta', 'Nn1g05981' => 'nnu', 'Nn1g06288' => 'nnu', 'Nn3g16371' => 'nnu', 'Nn3g16786' => 'nnu', 'Nn4g22232' => 'nnu', 'Oeu005144.1' => 'oeu', 'Oeu005145.1' => 'oeu', 'Oeu011348.1' => 'oeu', 'Oeu016415.1' => 'oeu', 'Oeu023501.1' => 'oeu', 'Oeu044473.1' => 'oeu', 'Oeu048892.2' => 'oeu', 'Os01g0549200' => 'osa', 'Os02g0469300' => 'osa', 'Os04g0311100' => 'osa', 'Os06g0474900' => 'osa', 'Os10g0181700' => 'osa', 'Os11g0454800' => 'osa', 'Peaxi162Scf00037g00714' => 'pax', 'Peaxi162Scf00084g01217' => 'pax', 'Peaxi162Scf00257g00217' => 'pax', 'Peaxi162Scf00516g00215' => 'pax', 'Peaxi162Scf00689g00123' => 'pax', 'PGR044G2719' => 'pgr', 'PGR083G1360' => 'pgr', 'PGR102G2849' => 'pgr', 'PGR119G2534' => 'pgr', 'PGSC0003DMG400003538' => 'stu', 'PGSC0003DMG400028138' => 'stu', 'PGSC0003DMG400031732' => 'stu', 'PGSC0003DMG400038165' => 'stu', 'Phvul.002G284600' => 'pvu', 'Phvul.003G258200' => 'pvu', 'Phvul.009G176500' => 'pvu', 'Potri.003G167201' => 'ptr', 'Potri.005G118400' => 'ptr', 'Potri.012G089000' => 'ptr', 'Potri.012G102800' => 'ptr', 'Potri.015G079400' => 'ptr', 'Potri.015G100900' => 'ptr', 'Pp3c14_9810' => 'ppa', 'Pp3c15_10450' => 'ppa', 'Pp3c20_19150' => 'ppa', 'Pp3c23_12740' => 'ppa', 'Pp3c23_6310' => 'ppa', 'Pp3c24_3720' => 'ppa', 'Pp3c27_2580' => 'ppa', 'Pp3c9_8990' => 'ppa', 'PRCOL_00002854' => 'pco', 'Prupe.1G221200' => 'ppe', 'Prupe.3G289000' => 'ppe', 'Prupe.5G147000' => 'ppe', 'Prupe.6G157300' => 'ppe', 'Prupe.7G163400' => 'ppe', 'Psat0s2177g0040' => 'psa', 'Psat3g174760' => 'psa', 'Psat3g192160' => 'psa', 'Psat4g058520' => 'psa', 'Psat4g096840' => 'psa', 'Psat7g037320' => 'psa', 'PSO017G1274' => 'pso', 'PSO017G5166' => 'pso', 'PSO063G4558' => 'pso', 'PSO170G4458' => 'pso', 'PSO170G5005' => 'pso', 'PSO210G6156' => 'pso', 'PSO210G6635' => 'pso', 'PSO210G7397' => 'pso', 'PSO210G7700' => 'pso', 'PSO455G0035' => 'pso', 'PSO455G0180' => 'pso', 'PSO478G4515' => 'pso', 'PSO832G1305' => 'pso', 'PSO832G3489' => 'pso', 'QL02p075247' => 'qlo', 'QL03p051148' => 'qlo', 'QL05p010313' => 'qlo', 'QL06p034627' => 'qlo', 'QL10p001889' => 'qlo', 'QL10p010846' => 'qlo', 'RcHm_v2.0_Chr1g0350621' => 'rch', 'RcHm_v2.0_Chr1g0350641' => 'rch', 'RcHm_v2.0_Chr2g0092891' => 'rch', 'RcHm_v2.0_Chr2g0100251' => 'rch', 'RcHm_v2.0_Chr2g0158661' => 'rch', 'RcHm_v2.0_Chr2g0172741' => 'rch', 'RcHm_v2.0_Chr4g0429571' => 'rch', 'RcHm_v2.0_Chr5g0042471' => 'rch', 'RcHm_v2.0_Chr7g0189451' => 'rch', 'Rhsim08G0052000' => 'rsi', 'Rhsim08G0174400' => 'rsi', 'Rhsim08G0193200' => 'rsi', 'Rhsim10G0214800' => 'rsi', 'Rhsim10G0214900' => 'rsi', 'Rhsim10G0215000' => 'rsi', 'Rhsim12G0022900' => 'rsi', 'Rhsim12G0177500' => 'rsi', 'Rhsim12G0177700' => 'rsi', 'Sabra03G0122600' => 'sbr', 'Sabra05G0097400' => 'sbr', 'Sabra12G0064100' => 'sbr', 'Sabra15G0121300' => 'sbr', 'SalBow2G0642' => 'sbo', 'SalBow5G2667' => 'sbo', 'SalBow5G4873' => 'sbo', 'SalBow8G2395' => 'sbo', 'Sc03g0003290' => 'sci', 'Sc10g0010130' => 'sci', 'Sc22g0003650' => 'sci', 'Sed0001603' => 'sed', 'Sed0004259' => 'sed', 'Sed0006789' => 'sed', 'Sed0011838' => 'sed', 'Sed0012964' => 'sed', 'Sed0016383' => 'sed', 'Sed0019010' => 'sed', 'Sed0020188' => 'sed', 'SEGI_04702' => 'sgi', 'SEGI_17231' => 'sgi', 'SEGI_18877' => 'sgi', 'SEGI_25196' => 'sgi', 'SEGI_25515' => 'sgi', 'SEGI_28445' => 'sgi', 'SEGI_37452' => 'sgi', 'SGA_v2.0_scaffold188G40336' => 'sas', 'SGA_v2.0_scaffold228G43247' => 'sas', 'SGA_v2.0_scaffold280G46853' => 'sas', 'SGA_v2.0_scaffold34G13808' => 'sas', 'SGA_v2.0_scaffold40G15576' => 'sas', 'SGA_v2.0_scaffold611G53188' => 'sas', 'SGA_v2.0_scaffold78G25461' => 'sas', 'SGA_v2.0_scaffold90G27888' => 'sas', 'SHI08601' => 'shi', 'SHI08606' => 'shi', 'SHI17117' => 'shi', 'SHI17119' => 'shi', 'SMO118G0201' => 'smo', 'SMO169G0247' => 'smo', 'SMO176G0006' => 'smo', 'SMO176G0015' => 'smo', 'SMO202G0006' => 'smo', 'SMO240G0050' => 'smo', 'SMO286G0009' => 'smo', 'SMO338G0033' => 'smo', 'SMO356G0533' => 'smo', 'SMO364G0382' => 'smo', 'SMO367G0166' => 'smo', 'SMO367G1098' => 'smo', 'Solyc01g009920.3' => 'sly', 'Solyc01g099300.3' => 'sly', 'Solyc02g084700.3' => 'sly', 'Solyc03g097520.3' => 'sly', 'Solyc06g071580.3' => 'sly', 'Solyc10g081760.3' => 'sly', 'Sopen01g005480' => 'spe', 'Sopen01g042850' => 'spe', 'Sopen02g029370' => 'spe', 'Sopen03g028280' => 'spe', 'Sopen06g027870' => 'spe', 'Sopen10g032270' => 'spe', 'Sp5g18180' => 'spa', 'Sp6g12880' => 'spa', 'Sp6g30850' => 'spa', 'Sp7g22960' => 'spa', 'Sp7g34010' => 'spa', 'SpUn1326_0010' => 'spa', 'TAR371G0242' => 'tar', 'TAR622G0638' => 'tar', 'TAR628G1548' => 'tar', 'TAR629G1079' => 'tar', 'TAR629G3413' => 'tar', 'THA.LOC104804249' => 'tha', 'THA.LOC104808315' => 'tha', 'THA.LOC104809238' => 'tha', 'THA.LOC104825484' => 'tha', 'Thecc.01G025500' => 'tca', 'Thecc.03G015800' => 'tca', 'Thecc.03G018000' => 'tca', 'Thecc.03G134800' => 'tca', 'Thecc.04G014700' => 'tca', 'Thhalv10006991m.g' => 'esa', 'Thhalv10012707m.g' => 'esa', 'Thhalv10015739m.g' => 'esa', 'Thhalv10024553m.g' => 'esa', 'Thhalv10024673m.g' => 'esa', 'Thhalv10029187m.g' => 'esa', 'TPR.G12971' => 'tpr', 'TPR.G29396' => 'tpr', 'TPR.G33376' => 'tpr', 'TPR.G35508' => 'tpr', 'TPR.G35516' => 'tpr', 'TPR.G37317' => 'tpr', 'TPR.G37389' => 'tpr', 'TPR.G37523' => 'tpr', 'TPR.G559' => 'tpr', 'TWI14G0070' => 'twi', 'TWI14G0729' => 'twi', 'TWI18G0596' => 'twi', 'TWI39G0780' => 'twi', 'TWI39G0850' => 'twi', 'TWI73G1052' => 'twi', 'unitig_52.g17485' => 'ugi', 'unitig_61.g26355' => 'ugi', 'vmacro01040' => 'vma', 'vmacro16731' => 'vma', 'vmacro18270' => 'vma', 'vmacro19142' => 'vma', 'vmacro19407' => 'vma', 'vmacro19408' => 'vma', 'vmacro21899' => 'vma', 'vmacro21900' => 'vma', 'vmacro21901' => 'vma', 'VMungo0251G0490' => 'vmu', 'VMungo0251G1748' => 'vmu', 'VMungo1309G0421' => 'vmu', 'Zm00001eb086500' => 'zma', 'Zm00001eb150680' => 'zma', 'Zm00001eb162330' => 'zma', 'Zm00001eb203130' => 'zma', 'Zm00001eb369480' => 'zma', 'Zm00001eb382340' => 'zma', 'Zm00001eb416360' => 'zma' ), 'gf_id' => 'HOM05D000902', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000902' ), 'data_identifier' => 'HOM05D000902', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000902', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '663', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02470' => 'bna', 'A01p16260' => 'bna', 'A02p01680' => 'bna', 'A03p16600' => 'bna', 'A03p55660' => 'bna', 'A03p64160' => 'bna', 'A03p64170' => 'bna', 'A08p31900' => 'bna', 'A09p59530' => 'bna', 'A10p08230' => 'bna', 'A10p25090' => 'bna', 'Aa31LG3G7100' => 'aar', 'Aa31LG3G7110' => 'aar', 'Aa31LG6G13160' => 'aar', 'Aa31LG7G10770' => 'aar', 'Aa31LG7G3830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2723' => 'aag', 'Actinidia08045' => 'ach', 'Actinidia08888' => 'ach', 'Actinidia18333' => 'ach', 'Actinidia19334' => 'ach', 'Actinidia25552' => 'ach', 'Actinidia26089' => 'ach', 'Actinidia30615' => 'ach', 'Actinidia30616' => 'ach', 'Actinidia33083' => 'ach', 'Actinidia35762' => 'ach', 'Ah.02g110620' => 'amhyb', 'Ah.11g046390' => 'amhyb', 'AL1G31670' => 'aly', 'AL6G23730' => 'aly', 'AL7G14740' => 'aly', 'AL7G14750' => 'aly', 'AL7G14760' => 'aly', 'AL7G28220' => 'aly', 'AL8G24940' => 'aly', 'Aqoxy3G01665' => 'aox', 'Aqoxy3G02853' => 'aox', 'Aqoxy5G01513' => 'aox', 'Aqoxy5G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8SKA4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ75LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKDA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0LJZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7REX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZP4YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWX7I5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2QKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS0L9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPCD8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q161UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC7XCF' => 'arhy', 'AT1G19100' => 'ath', 'AT4G24970' => 'ath', 'AT4G36270' => 'ath', 'AT4G36280' => 'ath', 'AT4G36290' => 'ath', 'AT5G13130' => 'ath', 'AT5G50780' => 'ath', 'ATR0582G266' => 'atr', 'ATR0661G195' => 'atr', 'ATR1152G031' => 'atr', 'Atru.chr11.2382' => 'acertr', 'Atru.chr12.2337' => 'acertr', 'Atru.chr3.744' => 'acertr', 'Atru.chr6.1870' => 'acertr', 'Atru.chr9.2515' => 'acertr', 'AUR62004120' => 'cqu', 'AUR62005667' => 'cqu', 'AUR62007634' => 'cqu', 'AUR62008186' => 'cqu', 'AUR62008187' => 'cqu', 'AUR62008188' => 'cqu', 'AUR62027954' => 'cqu', 'AUR62028766' => 'cqu', 'AUR62028767' => 'cqu', 'AUR62028768' => 'cqu', 'AUR62028886' => 'cqu', 'AUR62029563' => 'cqu', 'AUR62038832' => 'cqu', 'BcaB01g04149' => 'bca', 'BcaB03g12940' => 'bca', 'BcaB03g13090' => 'bca', 'BcaB03g14466' => 'bca', 'BcaB05g24035' => 'bca', 'BcaC01g06050' => 'bca', 'BcaC04g19148' => 'bca', 'BcaC04g20761' => 'bca', 'BcaC06g32845' => 'bca', 'BcaC07g41274' => 'bca', 'BcaC09g50827' => 'bca', 'BcaNung00741' => 'bca', 'BcaNung00742' => 'bca', 'BcaNung01859' => 'bca', 'BcaNung03985' => 'bca', 'BcaNung03989' => 'bca', 'BcaNung05661' => 'bca', 'BolC1t00257H' => 'bol', 'BolC1t01956H' => 'bol', 'BolC2t06534H' => 'bol', 'BolC3t14334H' => 'bol', 'BolC5t30451H' => 'bol', 'BolC7t45880H' => 'bol', 'BolC7t46586H' => 'bol', 'BolC8t49301H' => 'bol', 'BolC8t51837H' => 'bol', 'BolC9t56822H' => 'bol', 'BolC9t59235H' => 'bol', 'BraA01t00234Z' => 'bra', 'BraA01t01563Z' => 'bra', 'BraA02t05147Z' => 'bra', 'BraA03t10947Z' => 'bra', 'BraA03t14633Z' => 'bra', 'BraA08t35112Z' => 'bra', 'BraA09t41330Z' => 'bra', 'BraA10t44570Z' => 'bra', 'C01p02670' => 'bna', 'C01p20260' => 'bna', 'C02p05890' => 'bna', 'C03p19530' => 'bna', 'C05p17470' => 'bna', 'C07p53900' => 'bna', 'C07p61630' => 'bna', 'C08p16800' => 'bna', 'C08p42810' => 'bna', 'C09p39480' => 'bna', 'C09p63980' => 'bna', 'CAN.G1001.7' => 'can', 'CAN.G1034.55' => 'can', 'CAN.G143.7' => 'can', 'CAN.G3340.1' => 'can', 'CAN.G358.19' => 'can', 'CAN.G373.2' => 'can', 'CAN.G674.16' => 'can', 'CAN.G674.17' => 'can', 'CAN.G674.18' => 'can', 'CAN.G732.2' => 'can', 'CAN.G732.3' => 'can', 'CAN.G993.39' => 'can', 'CANSAT01G2052' => 'cansat', 'CANSAT80G0070' => 'cansat', 'CANSAT80G0483' => 'cansat', 'CANSAT80G0625' => 'cansat', 'CARHR019690' => 'chi', 'CARHR080280' => 'chi', 'CARHR152750' => 'chi', 'CARHR152760' => 'chi', 'CARHR152770' => 'chi', 'CARHR200340' => 'chi', 'CARHR232370' => 'chi', 'CARHR244670' => 'chi', 'CARHR244680' => 'chi', 'CARHR257520' => 'chi', 'Carub.0001s1872' => 'cru', 'Carub.0006s1130' => 'cru', 'Carub.0007s0396' => 'cru', 'Carub.0007s0397' => 'cru', 'Carub.0007s1608' => 'cru', 'Carub.0008s1068' => 'cru', 'Carub.0008s1077' => 'cru', 'Ca_16158_v3' => 'car', 'Ca_17571_v3' => 'car', 'Ca_21936_v3' => 'car', 'Ca_22350_v3' => 'car', 'CBR_g22445' => 'cbr', 'CBR_g26290' => 'cbr', 'Cc04_g09610' => 'ccan', 'Cc04_g12280' => 'ccan', 'Cc07_g10230' => 'ccan', 'CDE02G0093' => 'cde', 'CDE02G0701' => 'cde', 'CDE04G1050' => 'cde', 'CDE05G1833' => 'cde', 'CDE05G3058' => 'cde', 'CDE05G3380' => 'cde', 'CDE06G0536' => 'cde', 'Cfa006923' => 'cfa', 'Cfa009402' => 'cfa', 'Cfa018751' => 'cfa', 'Cfa019164' => 'cfa', 'Cfa022935' => 'cfa', 'Ciclev10019081m.g' => 'ccl', 'Ciclev10025076m.g' => 'ccl', 'Ciclev10030712m.g' => 'ccl', 'Ciclev10033760m.g' => 'ccl', 'CiPaw.05G105600' => 'cil', 'CiPaw.08G136700' => 'cil', 'CiPaw.11G003900' => 'cil', 'CiPaw.11G023700' => 'cil', 'CiPaw.12G003700' => 'cil', 'ClCG06G017100' => 'cla', 'ClCG06G018110' => 'cla', 'ClCG07G008800' => 'cla', 'ClCG07G015330' => 'cla', 'COL.COLO4_13698' => 'col', 'COL.COLO4_16659' => 'col', 'COL.COLO4_21986' => 'col', 'COL.COLO4_24049' => 'col', 'COL.COLO4_29061' => 'col', 'COL.COLO4_29075' => 'col', 'COL.COLO4_30094' => 'col', 'Cpa.g.c33689' => 'cpa', 'Cpa.g.sc108.39' => 'cpa', 'Cpa.g.sc108.41' => 'cpa', 'Cpa.g.sc1163.1' => 'cpa', 'Cpa.g.sc4.155' => 'cpa', 'Cpa.g.sc6.194' => 'cpa', 'CsaV3_1G000340' => 'csa', 'CsaV3_1G001400' => 'csa', 'CsaV3_4G002220' => 'csa', 'CsaV3_4G005370' => 'csa', 'CSS0007487' => 'camsi', 'CSS0008066' => 'camsi', 'CSS0009120' => 'camsi', 'CSS0015512' => 'camsi', 'CSS0022409' => 'camsi', 'CSS0025358' => 'camsi', 'CSS0044547' => 'camsi', 'DCAR_013057' => 'dca', 'DCAR_015058' => 'dca', 'DCAR_016027' => 'dca', 'DCAR_017327' => 'dca', 'DCAR_020743' => 'dca', 'DCAR_026157' => 'dca', 'DCAR_032339' => 'dca', 'DCAR_032340' => 'dca', 'Dinv11200' => 'din', 'Dinv11201' => 'din', 'Dinv20631' => 'din', 'Dinv23182' => 'din', 'Dinv33466' => 'din', 'Dinv33583' => 'din', 'Dinv38565' => 'din', 'Duzib068G0200' => 'dzi', 'Duzib147G0132' => 'dzi', 'Duzib147G0635' => 'dzi', 'Duzib205G1670' => 'dzi', 'Duzib251G0606' => 'dzi', 'ECA232G3336' => 'eca', 'ECA232G3763' => 'eca', 'ECA232G4845' => 'eca', 'ECA234G1607' => 'eca', 'ECA246G0932' => 'eca', 'ECA247G0781' => 'eca', 'ECA247G1932' => 'eca', 'ECA247G2079' => 'eca', 'ECA247G3338' => 'eca', 'ECA247G4115' => 'eca', 'EL10Ac3g06552' => 'bvu', 'EL10Ac5g10721' => 'bvu', 'EL10Ac5g10722' => 'bvu', 'EL10Ac5g10723' => 'bvu', 'EL10Ac5g11361' => 'bvu', 'EL10Ac6g13553' => 'bvu', 'EL10As8g23872' => 'bvu', 'Eucgr.B00250' => 'egr', 'Eucgr.B00251' => 'egr', 'Eucgr.B03533' => 'egr', 'Eucgr.I02381' => 'egr', 'Eucgr.K02700' => 'egr', 'FAN02G0174' => 'fan', 'FAN02G3146' => 'fan', 'FAN04G1672' => 'fan', 'FAN04G2273' => 'fan', 'FAN05G2791' => 'fan', 'FAN05G4035' => 'fan', 'FAN07G0834' => 'fan', 'FAN08G1198' => 'fan', 'FAN09G4182' => 'fan', 'FAN12G0496' => 'fan', 'FAN13G1027' => 'fan', 'FAN13G2951' => 'fan', 'FAN14G0705' => 'fan', 'FAN14G0720' => 'fan', 'FAN17G0201' => 'fan', 'FAN17G2665' => 'fan', 'FAN18G1456' => 'fan', 'FAN18G1525' => 'fan', 'FAN18G3500' => 'fan', 'FAN28G2670' => 'fan', 'FvH4_1g12391' => 'fve', 'FvH4_4g23220' => 'fve', 'FvH4_5g08810' => 'fve', 'FvH4_5g28960' => 'fve', 'FvH4_6g42820' => 'fve', 'FvH4_6g51110' => 'fve', 'Glyma.02G051802' => 'gma', 'Glyma.04G185300' => 'gma', 'Glyma.05G202900' => 'gma', 'Glyma.08G010300' => 'gma', 'Glyma.16G131900' => 'gma', 'Glyma.17G087900' => 'gma', 'Gohir.A07G048600' => 'ghi', 'Gohir.A11G179000' => 'ghi', 'Gohir.A12G140900' => 'ghi', 'Gohir.A12G140950' => 'ghi', 'Gohir.A12G191700' => 'ghi', 'Gohir.A13G086300' => 'ghi', 'Gohir.D07G052900' => 'ghi', 'Gohir.D11G186600' => 'ghi', 'Gohir.D12G145575' => 'ghi', 'Gohir.D12G145650' => 'ghi', 'Gohir.D12G145725' => 'ghi', 'Gohir.D12G194050' => 'ghi', 'Gohir.D13G091800' => 'ghi', 'Gorai.001G055900' => 'gra', 'Gorai.007G198400' => 'gra', 'Gorai.008G157000' => 'gra', 'Gorai.008G157100' => 'gra', 'Gorai.008G208700' => 'gra', 'Gorai.010G138700' => 'gra', 'GSVIVG01000977001' => 'vvi', 'GSVIVG01007708001' => 'vvi', 'GSVIVG01008587001' => 'vvi', 'GSVIVG01018849001' => 'vvi', 'GSVIVG01032432001' => 'vvi', 'HanXRQChr02g0034131' => 'han', 'HanXRQChr02g0035981' => 'han', 'HanXRQChr02g0035991' => 'han', 'HanXRQChr05g0155611' => 'han', 'HanXRQChr05g0155621' => 'han', 'HanXRQChr08g0236501' => 'han', 'HanXRQChr09g0261321' => 'han', 'HanXRQChr09g0272081' => 'han', 'HanXRQChr10g0310741' => 'han', 'HanXRQChr11g0325591' => 'han', 'HanXRQChr12g0385691' => 'han', 'HanXRQChr13g0387801' => 'han', 'HanXRQChr15g0463011' => 'han', 'Haze_03826' => 'cav', 'Haze_03827' => 'cav', 'Haze_07183' => 'cav', 'Haze_07537' => 'cav', 'Haze_07539' => 'cav', 'Haze_12461' => 'cav', 'Haze_16115' => 'cav', 'Haze_16808' => 'cav', 'Haze_18531' => 'cav', 'Hma1.2p1_0046F.1_g026700' => 'hma', 'Hma1.2p1_0046F.1_g026710' => 'hma', 'Hma1.2p1_0168F.1_g074340' => 'hma', 'Hma1.2p1_0266F.1_g107030' => 'hma', 'Hma1.2p1_0266F.1_g107060' => 'hma', 'Hma1.2p1_0275F.1_g110510' => 'hma', 'Hma1.2p1_0592F.1_g185490' => 'hma', 'Hma1.2p1_0592F.1_g185500' => 'hma', 'Hma1.2p1_0592F.1_g185510' => 'hma', 'Hma1.2p1_0592F.1_g185520' => 'hma', 'Hma1.2p1_0592F.1_g185530' => 'hma', 'Hma1.2p1_0818F.1_g223450' => 'hma', 'HPP92_009708' => 'vpl', 'HPP92_009793' => 'vpl', 'HPP92_009796' => 'vpl', 'HPP92_009797' => 'vpl', 'HPP92_014940' => 'vpl', 'HPP92_014988' => 'vpl', 'Hund02463' => 'sun', 'Hund02760' => 'sun', 'Hund05071' => 'sun', 'Hund10108' => 'sun', 'Hund11204' => 'sun', 'Hund14016' => 'sun', 'Hund16464' => 'sun', 'Lalb_Chr09g0333391' => 'lal', 'Lalb_Chr11g0070461' => 'lal', 'Lalb_Chr12g0201671' => 'lal', 'Lalb_Chr13g0297161' => 'lal', 'Lj1g0002823' => 'lja', 'Lj3C1074T6' => 'lonja', 'Lj4A212T28' => 'lonja', 'Lj4g0005516' => 'lja', 'Lj4g0013705' => 'lja', 'Lj4g0027865' => 'lja', 'Lj5C92G16' => 'lonja', 'Lj5C92T12' => 'lonja', 'Lj7C596T3' => 'lonja', 'Lj9A446G59' => 'lonja', 'Lj9A482G21' => 'lonja', 'Lsat_1_v5_gn_1_28261' => 'lsa', 'Lsat_1_v5_gn_1_28281' => 'lsa', 'Lsat_1_v5_gn_1_32721' => 'lsa', 'Lsat_1_v5_gn_4_151760' => 'lsa', 'Lsat_1_v5_gn_4_2120' => 'lsa', 'Lsat_1_v5_gn_4_75761' => 'lsa', 'Lsat_1_v5_gn_5_10920' => 'lsa', 'Manes.02G099900' => 'mes', 'Manes.11G096200' => 'mes', 'Manes.12G007200' => 'mes', 'Manes.14G048300' => 'mes', 'Manes.17G114700' => 'mes', 'Mapoly0002s0070' => 'mpo', 'Mapoly0029s0099' => 'mpo', 'MBI07_g24742_MAGBIO' => 'mbi', 'MBI10_g27988_MAGBIO' => 'mbi', 'MBI11_g13057_MAGBIO' => 'mbi', 'MD02G1137200' => 'mdo', 'MD06G1137200' => 'mdo', 'MD07G1122300' => 'mdo', 'MD09G1078200' => 'mdo', 'MD13G1123700' => 'mdo', 'MD14G1151900' => 'mdo', 'MD17G1030900' => 'mdo', 'MD17G1068200' => 'mdo', 'MD17G1068600' => 'mdo', 'Medtr3g077540' => 'mtr', 'Medtr4g105530' => 'mtr', 'Medtr8g076580' => 'mtr', 'Medtr8g076590' => 'mtr', 'Medtr8g096410' => 'mtr', 'MELO3C016411.2' => 'cme', 'MELO3C017780.2' => 'cme', 'MELO3C022560.2' => 'cme', 'MELO3C026187.2' => 'cme', 'MELO3C026286.2' => 'cme', 'MELO3C032854.2' => 'cme', 'Migut.H02495' => 'egut', 'Migut.I00561' => 'egut', 'Migut.K01015' => 'egut', 'Migut.K01016' => 'egut', 'Migut.L00743' => 'egut', 'Migut.L00744' => 'egut', 'Migut.L00746' => 'egut', 'Migut.L00798' => 'egut', 'Migut.L00799' => 'egut', 'Migut.N02096' => 'egut', 'MSTRG.11259' => 'ama', 'MSTRG.23142' => 'ama', 'MSTRG.2499' => 'ama', 'Nitab4.5_0000003g0730' => 'nta', 'Nitab4.5_0000137g0020' => 'nta', 'Nitab4.5_0000721g0210' => 'nta', 'Nitab4.5_0000723g0050' => 'nta', 'Nitab4.5_0000913g0070' => 'nta', 'Nitab4.5_0001332g0040' => 'nta', 'Nitab4.5_0001771g0050' => 'nta', 'Nitab4.5_0001918g0050' => 'nta', 'Nitab4.5_0002686g0030' => 'nta', 'Nitab4.5_0003156g0020' => 'nta', 'Nitab4.5_0003383g0040' => 'nta', 'Nitab4.5_0003918g0010' => 'nta', 'Nitab4.5_0006760g0010' => 'nta', 'Nn1g05981' => 'nnu', 'Nn1g06288' => 'nnu', 'Nn3g16371' => 'nnu', 'Nn3g16786' => 'nnu', 'Nn4g22232' => 'nnu', 'Oeu005144.1' => 'oeu', 'Oeu005145.1' => 'oeu', 'Oeu011348.1' => 'oeu', 'Oeu016415.1' => 'oeu', 'Oeu023501.1' => 'oeu', 'Oeu044473.1' => 'oeu', 'Oeu048892.2' => 'oeu', 'Os01g0549200' => 'osa', 'Os02g0469300' => 'osa', 'Os04g0311100' => 'osa', 'Os06g0474900' => 'osa', 'Os10g0181700' => 'osa', 'Os11g0454800' => 'osa', 'Peaxi162Scf00037g00714' => 'pax', 'Peaxi162Scf00084g01217' => 'pax', 'Peaxi162Scf00257g00217' => 'pax', 'Peaxi162Scf00516g00215' => 'pax', 'Peaxi162Scf00689g00123' => 'pax', 'PGR044G2719' => 'pgr', 'PGR083G1360' => 'pgr', 'PGR102G2849' => 'pgr', 'PGR119G2534' => 'pgr', 'PGSC0003DMG400003538' => 'stu', 'PGSC0003DMG400028138' => 'stu', 'PGSC0003DMG400031732' => 'stu', 'PGSC0003DMG400038165' => 'stu', 'Phvul.002G284600' => 'pvu', 'Phvul.003G258200' => 'pvu', 'Phvul.009G176500' => 'pvu', 'Potri.003G167201' => 'ptr', 'Potri.005G118400' => 'ptr', 'Potri.012G089000' => 'ptr', 'Potri.012G102800' => 'ptr', 'Potri.015G079400' => 'ptr', 'Potri.015G100900' => 'ptr', 'Pp3c14_9810' => 'ppa', 'Pp3c15_10450' => 'ppa', 'Pp3c20_19150' => 'ppa', 'Pp3c23_12740' => 'ppa', 'Pp3c23_6310' => 'ppa', 'Pp3c24_3720' => 'ppa', 'Pp3c27_2580' => 'ppa', 'Pp3c9_8990' => 'ppa', 'PRCOL_00002854' => 'pco', 'Prupe.1G221200' => 'ppe', 'Prupe.3G289000' => 'ppe', 'Prupe.5G147000' => 'ppe', 'Prupe.6G157300' => 'ppe', 'Prupe.7G163400' => 'ppe', 'Psat0s2177g0040' => 'psa', 'Psat3g174760' => 'psa', 'Psat3g192160' => 'psa', 'Psat4g058520' => 'psa', 'Psat4g096840' => 'psa', 'Psat7g037320' => 'psa', 'PSO017G1274' => 'pso', 'PSO017G5166' => 'pso', 'PSO063G4558' => 'pso', 'PSO170G4458' => 'pso', 'PSO170G5005' => 'pso', 'PSO210G6156' => 'pso', 'PSO210G6635' => 'pso', 'PSO210G7397' => 'pso', 'PSO210G7700' => 'pso', 'PSO455G0035' => 'pso', 'PSO455G0180' => 'pso', 'PSO478G4515' => 'pso', 'PSO832G1305' => 'pso', 'PSO832G3489' => 'pso', 'QL02p075247' => 'qlo', 'QL03p051148' => 'qlo', 'QL05p010313' => 'qlo', 'QL06p034627' => 'qlo', 'QL10p001889' => 'qlo', 'QL10p010846' => 'qlo', 'RcHm_v2.0_Chr1g0350621' => 'rch', 'RcHm_v2.0_Chr1g0350641' => 'rch', 'RcHm_v2.0_Chr2g0092891' => 'rch', 'RcHm_v2.0_Chr2g0100251' => 'rch', 'RcHm_v2.0_Chr2g0158661' => 'rch', 'RcHm_v2.0_Chr2g0172741' => 'rch', 'RcHm_v2.0_Chr4g0429571' => 'rch', 'RcHm_v2.0_Chr5g0042471' => 'rch', 'RcHm_v2.0_Chr7g0189451' => 'rch', 'Rhsim08G0052000' => 'rsi', 'Rhsim08G0174400' => 'rsi', 'Rhsim08G0193200' => 'rsi', 'Rhsim10G0214800' => 'rsi', 'Rhsim10G0214900' => 'rsi', 'Rhsim10G0215000' => 'rsi', 'Rhsim12G0022900' => 'rsi', 'Rhsim12G0177500' => 'rsi', 'Rhsim12G0177700' => 'rsi', 'Sabra03G0122600' => 'sbr', 'Sabra05G0097400' => 'sbr', 'Sabra12G0064100' => 'sbr', 'Sabra15G0121300' => 'sbr', 'SalBow2G0642' => 'sbo', 'SalBow5G2667' => 'sbo', 'SalBow5G4873' => 'sbo', 'SalBow8G2395' => 'sbo', 'Sc03g0003290' => 'sci', 'Sc10g0010130' => 'sci', 'Sc22g0003650' => 'sci', 'Sed0001603' => 'sed', 'Sed0004259' => 'sed', 'Sed0006789' => 'sed', 'Sed0011838' => 'sed', 'Sed0012964' => 'sed', 'Sed0016383' => 'sed', 'Sed0019010' => 'sed', 'Sed0020188' => 'sed', 'SEGI_04702' => 'sgi', 'SEGI_17231' => 'sgi', 'SEGI_18877' => 'sgi', 'SEGI_25196' => 'sgi', 'SEGI_25515' => 'sgi', 'SEGI_28445' => 'sgi', 'SEGI_37452' => 'sgi', 'SGA_v2.0_scaffold188G40336' => 'sas', 'SGA_v2.0_scaffold228G43247' => 'sas', 'SGA_v2.0_scaffold280G46853' => 'sas', 'SGA_v2.0_scaffold34G13808' => 'sas', 'SGA_v2.0_scaffold40G15576' => 'sas', 'SGA_v2.0_scaffold611G53188' => 'sas', 'SGA_v2.0_scaffold78G25461' => 'sas', 'SGA_v2.0_scaffold90G27888' => 'sas', 'SHI08601' => 'shi', 'SHI08606' => 'shi', 'SHI17117' => 'shi', 'SHI17119' => 'shi', 'SMO118G0201' => 'smo', 'SMO169G0247' => 'smo', 'SMO176G0006' => 'smo', 'SMO176G0015' => 'smo', 'SMO202G0006' => 'smo', 'SMO240G0050' => 'smo', 'SMO286G0009' => 'smo', 'SMO338G0033' => 'smo', 'SMO356G0533' => 'smo', 'SMO364G0382' => 'smo', 'SMO367G0166' => 'smo', 'SMO367G1098' => 'smo', 'Solyc01g009920.3' => 'sly', 'Solyc01g099300.3' => 'sly', 'Solyc02g084700.3' => 'sly', 'Solyc03g097520.3' => 'sly', 'Solyc06g071580.3' => 'sly', 'Solyc10g081760.3' => 'sly', 'Sopen01g005480' => 'spe', 'Sopen01g042850' => 'spe', 'Sopen02g029370' => 'spe', 'Sopen03g028280' => 'spe', 'Sopen06g027870' => 'spe', 'Sopen10g032270' => 'spe', 'Sp5g18180' => 'spa', 'Sp6g12880' => 'spa', 'Sp6g30850' => 'spa', 'Sp7g22960' => 'spa', 'Sp7g34010' => 'spa', 'SpUn1326_0010' => 'spa', 'TAR371G0242' => 'tar', 'TAR622G0638' => 'tar', 'TAR628G1548' => 'tar', 'TAR629G1079' => 'tar', 'TAR629G3413' => 'tar', 'THA.LOC104804249' => 'tha', 'THA.LOC104808315' => 'tha', 'THA.LOC104809238' => 'tha', 'THA.LOC104825484' => 'tha', 'Thecc.01G025500' => 'tca', 'Thecc.03G015800' => 'tca', 'Thecc.03G018000' => 'tca', 'Thecc.03G134800' => 'tca', 'Thecc.04G014700' => 'tca', 'Thhalv10006991m.g' => 'esa', 'Thhalv10012707m.g' => 'esa', 'Thhalv10015739m.g' => 'esa', 'Thhalv10024553m.g' => 'esa', 'Thhalv10024673m.g' => 'esa', 'Thhalv10029187m.g' => 'esa', 'TPR.G12971' => 'tpr', 'TPR.G29396' => 'tpr', 'TPR.G33376' => 'tpr', 'TPR.G35508' => 'tpr', 'TPR.G35516' => 'tpr', 'TPR.G37317' => 'tpr', 'TPR.G37389' => 'tpr', 'TPR.G37523' => 'tpr', 'TPR.G559' => 'tpr', 'TWI14G0070' => 'twi', 'TWI14G0729' => 'twi', 'TWI18G0596' => 'twi', 'TWI39G0780' => 'twi', 'TWI39G0850' => 'twi', 'TWI73G1052' => 'twi', 'unitig_52.g17485' => 'ugi', 'unitig_61.g26355' => 'ugi', 'vmacro01040' => 'vma', 'vmacro16731' => 'vma', 'vmacro18270' => 'vma', 'vmacro19142' => 'vma', 'vmacro19407' => 'vma', 'vmacro19408' => 'vma', 'vmacro21899' => 'vma', 'vmacro21900' => 'vma', 'vmacro21901' => 'vma', 'VMungo0251G0490' => 'vmu', 'VMungo0251G1748' => 'vmu', 'VMungo1309G0421' => 'vmu', 'Zm00001eb086500' => 'zma', 'Zm00001eb150680' => 'zma', 'Zm00001eb162330' => 'zma', 'Zm00001eb203130' => 'zma', 'Zm00001eb369480' => 'zma', 'Zm00001eb382340' => 'zma', 'Zm00001eb416360' => 'zma' ) $gf_id = 'HOM05D000902' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000902' ) $data_identifier = 'HOM05D000902' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 13, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 10, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 6, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 9, 'hma' => (int) 12, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 4, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 6, 'ppa' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 6, 'rch' => (int) 9, 'rsi' => (int) 9, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 12, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 3, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416360' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000902', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '663', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02470' => 'bna', 'A01p16260' => 'bna', 'A02p01680' => 'bna', 'A03p16600' => 'bna', 'A03p55660' => 'bna', 'A03p64160' => 'bna', 'A03p64170' => 'bna', 'A08p31900' => 'bna', 'A09p59530' => 'bna', 'A10p08230' => 'bna', 'A10p25090' => 'bna', 'Aa31LG3G7100' => 'aar', 'Aa31LG3G7110' => 'aar', 'Aa31LG6G13160' => 'aar', 'Aa31LG7G10770' => 'aar', 'Aa31LG7G3830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2723' => 'aag', 'Actinidia08045' => 'ach', 'Actinidia08888' => 'ach', 'Actinidia18333' => 'ach', 'Actinidia19334' => 'ach', 'Actinidia25552' => 'ach', 'Actinidia26089' => 'ach', 'Actinidia30615' => 'ach', 'Actinidia30616' => 'ach', 'Actinidia33083' => 'ach', 'Actinidia35762' => 'ach', 'Ah.02g110620' => 'amhyb', 'Ah.11g046390' => 'amhyb', 'AL1G31670' => 'aly', 'AL6G23730' => 'aly', 'AL7G14740' => 'aly', 'AL7G14750' => 'aly', 'AL7G14760' => 'aly', 'AL7G28220' => 'aly', 'AL8G24940' => 'aly', 'Aqoxy3G01665' => 'aox', 'Aqoxy3G02853' => 'aox', 'Aqoxy5G01513' => 'aox', 'Aqoxy5G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8SKA4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ75LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKDA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0LJZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7REX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZP4YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWX7I5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2QKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS0L9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPCD8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q161UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC7XCF' => 'arhy', 'AT1G19100' => 'ath', 'AT4G24970' => 'ath', 'AT4G36270' => 'ath', 'AT4G36280' => 'ath', 'AT4G36290' => 'ath', 'AT5G13130' => 'ath', 'AT5G50780' => 'ath', 'ATR0582G266' => 'atr', 'ATR0661G195' => 'atr', 'ATR1152G031' => 'atr', 'Atru.chr11.2382' => 'acertr', 'Atru.chr12.2337' => 'acertr', 'Atru.chr3.744' => 'acertr', 'Atru.chr6.1870' => 'acertr', 'Atru.chr9.2515' => 'acertr', 'AUR62004120' => 'cqu', 'AUR62005667' => 'cqu', 'AUR62007634' => 'cqu', 'AUR62008186' => 'cqu', 'AUR62008187' => 'cqu', 'AUR62008188' => 'cqu', 'AUR62027954' => 'cqu', 'AUR62028766' => 'cqu', 'AUR62028767' => 'cqu', 'AUR62028768' => 'cqu', 'AUR62028886' => 'cqu', 'AUR62029563' => 'cqu', 'AUR62038832' => 'cqu', 'BcaB01g04149' => 'bca', 'BcaB03g12940' => 'bca', 'BcaB03g13090' => 'bca', 'BcaB03g14466' => 'bca', 'BcaB05g24035' => 'bca', 'BcaC01g06050' => 'bca', 'BcaC04g19148' => 'bca', 'BcaC04g20761' => 'bca', 'BcaC06g32845' => 'bca', 'BcaC07g41274' => 'bca', 'BcaC09g50827' => 'bca', 'BcaNung00741' => 'bca', 'BcaNung00742' => 'bca', 'BcaNung01859' => 'bca', 'BcaNung03985' => 'bca', 'BcaNung03989' => 'bca', 'BcaNung05661' => 'bca', 'BolC1t00257H' => 'bol', 'BolC1t01956H' => 'bol', 'BolC2t06534H' => 'bol', 'BolC3t14334H' => 'bol', 'BolC5t30451H' => 'bol', 'BolC7t45880H' => 'bol', 'BolC7t46586H' => 'bol', 'BolC8t49301H' => 'bol', 'BolC8t51837H' => 'bol', 'BolC9t56822H' => 'bol', 'BolC9t59235H' => 'bol', 'BraA01t00234Z' => 'bra', 'BraA01t01563Z' => 'bra', 'BraA02t05147Z' => 'bra', 'BraA03t10947Z' => 'bra', 'BraA03t14633Z' => 'bra', 'BraA08t35112Z' => 'bra', 'BraA09t41330Z' => 'bra', 'BraA10t44570Z' => 'bra', 'C01p02670' => 'bna', 'C01p20260' => 'bna', 'C02p05890' => 'bna', 'C03p19530' => 'bna', 'C05p17470' => 'bna', 'C07p53900' => 'bna', 'C07p61630' => 'bna', 'C08p16800' => 'bna', 'C08p42810' => 'bna', 'C09p39480' => 'bna', 'C09p63980' => 'bna', 'CAN.G1001.7' => 'can', 'CAN.G1034.55' => 'can', 'CAN.G143.7' => 'can', 'CAN.G3340.1' => 'can', 'CAN.G358.19' => 'can', 'CAN.G373.2' => 'can', 'CAN.G674.16' => 'can', 'CAN.G674.17' => 'can', 'CAN.G674.18' => 'can', 'CAN.G732.2' => 'can', 'CAN.G732.3' => 'can', 'CAN.G993.39' => 'can', 'CANSAT01G2052' => 'cansat', 'CANSAT80G0070' => 'cansat', 'CANSAT80G0483' => 'cansat', 'CANSAT80G0625' => 'cansat', 'CARHR019690' => 'chi', 'CARHR080280' => 'chi', 'CARHR152750' => 'chi', 'CARHR152760' => 'chi', 'CARHR152770' => 'chi', 'CARHR200340' => 'chi', 'CARHR232370' => 'chi', 'CARHR244670' => 'chi', 'CARHR244680' => 'chi', 'CARHR257520' => 'chi', 'Carub.0001s1872' => 'cru', 'Carub.0006s1130' => 'cru', 'Carub.0007s0396' => 'cru', 'Carub.0007s0397' => 'cru', 'Carub.0007s1608' => 'cru', 'Carub.0008s1068' => 'cru', 'Carub.0008s1077' => 'cru', 'Ca_16158_v3' => 'car', 'Ca_17571_v3' => 'car', 'Ca_21936_v3' => 'car', 'Ca_22350_v3' => 'car', 'CBR_g22445' => 'cbr', 'CBR_g26290' => 'cbr', 'Cc04_g09610' => 'ccan', 'Cc04_g12280' => 'ccan', 'Cc07_g10230' => 'ccan', 'CDE02G0093' => 'cde', 'CDE02G0701' => 'cde', 'CDE04G1050' => 'cde', 'CDE05G1833' => 'cde', 'CDE05G3058' => 'cde', 'CDE05G3380' => 'cde', 'CDE06G0536' => 'cde', 'Cfa006923' => 'cfa', 'Cfa009402' => 'cfa', 'Cfa018751' => 'cfa', 'Cfa019164' => 'cfa', 'Cfa022935' => 'cfa', 'Ciclev10019081m.g' => 'ccl', 'Ciclev10025076m.g' => 'ccl', 'Ciclev10030712m.g' => 'ccl', 'Ciclev10033760m.g' => 'ccl', 'CiPaw.05G105600' => 'cil', 'CiPaw.08G136700' => 'cil', 'CiPaw.11G003900' => 'cil', 'CiPaw.11G023700' => 'cil', 'CiPaw.12G003700' => 'cil', 'ClCG06G017100' => 'cla', 'ClCG06G018110' => 'cla', 'ClCG07G008800' => 'cla', 'ClCG07G015330' => 'cla', 'COL.COLO4_13698' => 'col', 'COL.COLO4_16659' => 'col', 'COL.COLO4_21986' => 'col', 'COL.COLO4_24049' => 'col', 'COL.COLO4_29061' => 'col', 'COL.COLO4_29075' => 'col', 'COL.COLO4_30094' => 'col', 'Cpa.g.c33689' => 'cpa', 'Cpa.g.sc108.39' => 'cpa', 'Cpa.g.sc108.41' => 'cpa', 'Cpa.g.sc1163.1' => 'cpa', 'Cpa.g.sc4.155' => 'cpa', 'Cpa.g.sc6.194' => 'cpa', 'CsaV3_1G000340' => 'csa', 'CsaV3_1G001400' => 'csa', 'CsaV3_4G002220' => 'csa', 'CsaV3_4G005370' => 'csa', 'CSS0007487' => 'camsi', 'CSS0008066' => 'camsi', 'CSS0009120' => 'camsi', 'CSS0015512' => 'camsi', 'CSS0022409' => 'camsi', 'CSS0025358' => 'camsi', 'CSS0044547' => 'camsi', 'DCAR_013057' => 'dca', 'DCAR_015058' => 'dca', 'DCAR_016027' => 'dca', 'DCAR_017327' => 'dca', 'DCAR_020743' => 'dca', 'DCAR_026157' => 'dca', 'DCAR_032339' => 'dca', 'DCAR_032340' => 'dca', 'Dinv11200' => 'din', 'Dinv11201' => 'din', 'Dinv20631' => 'din', 'Dinv23182' => 'din', 'Dinv33466' => 'din', 'Dinv33583' => 'din', 'Dinv38565' => 'din', 'Duzib068G0200' => 'dzi', 'Duzib147G0132' => 'dzi', 'Duzib147G0635' => 'dzi', 'Duzib205G1670' => 'dzi', 'Duzib251G0606' => 'dzi', 'ECA232G3336' => 'eca', 'ECA232G3763' => 'eca', 'ECA232G4845' => 'eca', 'ECA234G1607' => 'eca', 'ECA246G0932' => 'eca', 'ECA247G0781' => 'eca', 'ECA247G1932' => 'eca', 'ECA247G2079' => 'eca', 'ECA247G3338' => 'eca', 'ECA247G4115' => 'eca', 'EL10Ac3g06552' => 'bvu', 'EL10Ac5g10721' => 'bvu', 'EL10Ac5g10722' => 'bvu', 'EL10Ac5g10723' => 'bvu', 'EL10Ac5g11361' => 'bvu', 'EL10Ac6g13553' => 'bvu', 'EL10As8g23872' => 'bvu', 'Eucgr.B00250' => 'egr', 'Eucgr.B00251' => 'egr', 'Eucgr.B03533' => 'egr', 'Eucgr.I02381' => 'egr', 'Eucgr.K02700' => 'egr', 'FAN02G0174' => 'fan', 'FAN02G3146' => 'fan', 'FAN04G1672' => 'fan', 'FAN04G2273' => 'fan', 'FAN05G2791' => 'fan', 'FAN05G4035' => 'fan', 'FAN07G0834' => 'fan', 'FAN08G1198' => 'fan', 'FAN09G4182' => 'fan', 'FAN12G0496' => 'fan', 'FAN13G1027' => 'fan', 'FAN13G2951' => 'fan', 'FAN14G0705' => 'fan', 'FAN14G0720' => 'fan', 'FAN17G0201' => 'fan', 'FAN17G2665' => 'fan', 'FAN18G1456' => 'fan', 'FAN18G1525' => 'fan', 'FAN18G3500' => 'fan', 'FAN28G2670' => 'fan', 'FvH4_1g12391' => 'fve', 'FvH4_4g23220' => 'fve', 'FvH4_5g08810' => 'fve', 'FvH4_5g28960' => 'fve', 'FvH4_6g42820' => 'fve', 'FvH4_6g51110' => 'fve', 'Glyma.02G051802' => 'gma', 'Glyma.04G185300' => 'gma', 'Glyma.05G202900' => 'gma', 'Glyma.08G010300' => 'gma', 'Glyma.16G131900' => 'gma', 'Glyma.17G087900' => 'gma', 'Gohir.A07G048600' => 'ghi', 'Gohir.A11G179000' => 'ghi', 'Gohir.A12G140900' => 'ghi', 'Gohir.A12G140950' => 'ghi', 'Gohir.A12G191700' => 'ghi', 'Gohir.A13G086300' => 'ghi', 'Gohir.D07G052900' => 'ghi', 'Gohir.D11G186600' => 'ghi', 'Gohir.D12G145575' => 'ghi', 'Gohir.D12G145650' => 'ghi', 'Gohir.D12G145725' => 'ghi', 'Gohir.D12G194050' => 'ghi', 'Gohir.D13G091800' => 'ghi', 'Gorai.001G055900' => 'gra', 'Gorai.007G198400' => 'gra', 'Gorai.008G157000' => 'gra', 'Gorai.008G157100' => 'gra', 'Gorai.008G208700' => 'gra', 'Gorai.010G138700' => 'gra', 'GSVIVG01000977001' => 'vvi', 'GSVIVG01007708001' => 'vvi', 'GSVIVG01008587001' => 'vvi', 'GSVIVG01018849001' => 'vvi', 'GSVIVG01032432001' => 'vvi', 'HanXRQChr02g0034131' => 'han', 'HanXRQChr02g0035981' => 'han', 'HanXRQChr02g0035991' => 'han', 'HanXRQChr05g0155611' => 'han', 'HanXRQChr05g0155621' => 'han', 'HanXRQChr08g0236501' => 'han', 'HanXRQChr09g0261321' => 'han', 'HanXRQChr09g0272081' => 'han', 'HanXRQChr10g0310741' => 'han', 'HanXRQChr11g0325591' => 'han', 'HanXRQChr12g0385691' => 'han', 'HanXRQChr13g0387801' => 'han', 'HanXRQChr15g0463011' => 'han', 'Haze_03826' => 'cav', 'Haze_03827' => 'cav', 'Haze_07183' => 'cav', 'Haze_07537' => 'cav', 'Haze_07539' => 'cav', 'Haze_12461' => 'cav', 'Haze_16115' => 'cav', 'Haze_16808' => 'cav', 'Haze_18531' => 'cav', 'Hma1.2p1_0046F.1_g026700' => 'hma', 'Hma1.2p1_0046F.1_g026710' => 'hma', 'Hma1.2p1_0168F.1_g074340' => 'hma', 'Hma1.2p1_0266F.1_g107030' => 'hma', 'Hma1.2p1_0266F.1_g107060' => 'hma', 'Hma1.2p1_0275F.1_g110510' => 'hma', 'Hma1.2p1_0592F.1_g185490' => 'hma', 'Hma1.2p1_0592F.1_g185500' => 'hma', 'Hma1.2p1_0592F.1_g185510' => 'hma', 'Hma1.2p1_0592F.1_g185520' => 'hma', 'Hma1.2p1_0592F.1_g185530' => 'hma', 'Hma1.2p1_0818F.1_g223450' => 'hma', 'HPP92_009708' => 'vpl', 'HPP92_009793' => 'vpl', 'HPP92_009796' => 'vpl', 'HPP92_009797' => 'vpl', 'HPP92_014940' => 'vpl', 'HPP92_014988' => 'vpl', 'Hund02463' => 'sun', 'Hund02760' => 'sun', 'Hund05071' => 'sun', 'Hund10108' => 'sun', 'Hund11204' => 'sun', 'Hund14016' => 'sun', 'Hund16464' => 'sun', 'Lalb_Chr09g0333391' => 'lal', 'Lalb_Chr11g0070461' => 'lal', 'Lalb_Chr12g0201671' => 'lal', 'Lalb_Chr13g0297161' => 'lal', 'Lj1g0002823' => 'lja', 'Lj3C1074T6' => 'lonja', 'Lj4A212T28' => 'lonja', 'Lj4g0005516' => 'lja', 'Lj4g0013705' => 'lja', 'Lj4g0027865' => 'lja', 'Lj5C92G16' => 'lonja', 'Lj5C92T12' => 'lonja', 'Lj7C596T3' => 'lonja', 'Lj9A446G59' => 'lonja', 'Lj9A482G21' => 'lonja', 'Lsat_1_v5_gn_1_28261' => 'lsa', 'Lsat_1_v5_gn_1_28281' => 'lsa', 'Lsat_1_v5_gn_1_32721' => 'lsa', 'Lsat_1_v5_gn_4_151760' => 'lsa', 'Lsat_1_v5_gn_4_2120' => 'lsa', 'Lsat_1_v5_gn_4_75761' => 'lsa', 'Lsat_1_v5_gn_5_10920' => 'lsa', 'Manes.02G099900' => 'mes', 'Manes.11G096200' => 'mes', 'Manes.12G007200' => 'mes', 'Manes.14G048300' => 'mes', 'Manes.17G114700' => 'mes', 'Mapoly0002s0070' => 'mpo', 'Mapoly0029s0099' => 'mpo', 'MBI07_g24742_MAGBIO' => 'mbi', 'MBI10_g27988_MAGBIO' => 'mbi', 'MBI11_g13057_MAGBIO' => 'mbi', 'MD02G1137200' => 'mdo', 'MD06G1137200' => 'mdo', 'MD07G1122300' => 'mdo', 'MD09G1078200' => 'mdo', 'MD13G1123700' => 'mdo', 'MD14G1151900' => 'mdo', 'MD17G1030900' => 'mdo', 'MD17G1068200' => 'mdo', 'MD17G1068600' => 'mdo', 'Medtr3g077540' => 'mtr', 'Medtr4g105530' => 'mtr', 'Medtr8g076580' => 'mtr', 'Medtr8g076590' => 'mtr', 'Medtr8g096410' => 'mtr', 'MELO3C016411.2' => 'cme', 'MELO3C017780.2' => 'cme', 'MELO3C022560.2' => 'cme', 'MELO3C026187.2' => 'cme', 'MELO3C026286.2' => 'cme', 'MELO3C032854.2' => 'cme', 'Migut.H02495' => 'egut', 'Migut.I00561' => 'egut', 'Migut.K01015' => 'egut', 'Migut.K01016' => 'egut', 'Migut.L00743' => 'egut', 'Migut.L00744' => 'egut', 'Migut.L00746' => 'egut', 'Migut.L00798' => 'egut', 'Migut.L00799' => 'egut', 'Migut.N02096' => 'egut', 'MSTRG.11259' => 'ama', 'MSTRG.23142' => 'ama', 'MSTRG.2499' => 'ama', 'Nitab4.5_0000003g0730' => 'nta', 'Nitab4.5_0000137g0020' => 'nta', 'Nitab4.5_0000721g0210' => 'nta', 'Nitab4.5_0000723g0050' => 'nta', 'Nitab4.5_0000913g0070' => 'nta', 'Nitab4.5_0001332g0040' => 'nta', 'Nitab4.5_0001771g0050' => 'nta', 'Nitab4.5_0001918g0050' => 'nta', 'Nitab4.5_0002686g0030' => 'nta', 'Nitab4.5_0003156g0020' => 'nta', 'Nitab4.5_0003383g0040' => 'nta', 'Nitab4.5_0003918g0010' => 'nta', 'Nitab4.5_0006760g0010' => 'nta', 'Nn1g05981' => 'nnu', 'Nn1g06288' => 'nnu', 'Nn3g16371' => 'nnu', 'Nn3g16786' => 'nnu', 'Nn4g22232' => 'nnu', 'Oeu005144.1' => 'oeu', 'Oeu005145.1' => 'oeu', 'Oeu011348.1' => 'oeu', 'Oeu016415.1' => 'oeu', 'Oeu023501.1' => 'oeu', 'Oeu044473.1' => 'oeu', 'Oeu048892.2' => 'oeu', 'Os01g0549200' => 'osa', 'Os02g0469300' => 'osa', 'Os04g0311100' => 'osa', 'Os06g0474900' => 'osa', 'Os10g0181700' => 'osa', 'Os11g0454800' => 'osa', 'Peaxi162Scf00037g00714' => 'pax', 'Peaxi162Scf00084g01217' => 'pax', 'Peaxi162Scf00257g00217' => 'pax', 'Peaxi162Scf00516g00215' => 'pax', 'Peaxi162Scf00689g00123' => 'pax', 'PGR044G2719' => 'pgr', 'PGR083G1360' => 'pgr', 'PGR102G2849' => 'pgr', 'PGR119G2534' => 'pgr', 'PGSC0003DMG400003538' => 'stu', 'PGSC0003DMG400028138' => 'stu', 'PGSC0003DMG400031732' => 'stu', 'PGSC0003DMG400038165' => 'stu', 'Phvul.002G284600' => 'pvu', 'Phvul.003G258200' => 'pvu', 'Phvul.009G176500' => 'pvu', 'Potri.003G167201' => 'ptr', 'Potri.005G118400' => 'ptr', 'Potri.012G089000' => 'ptr', 'Potri.012G102800' => 'ptr', 'Potri.015G079400' => 'ptr', 'Potri.015G100900' => 'ptr', 'Pp3c14_9810' => 'ppa', 'Pp3c15_10450' => 'ppa', 'Pp3c20_19150' => 'ppa', 'Pp3c23_12740' => 'ppa', 'Pp3c23_6310' => 'ppa', 'Pp3c24_3720' => 'ppa', 'Pp3c27_2580' => 'ppa', 'Pp3c9_8990' => 'ppa', 'PRCOL_00002854' => 'pco', 'Prupe.1G221200' => 'ppe', 'Prupe.3G289000' => 'ppe', 'Prupe.5G147000' => 'ppe', 'Prupe.6G157300' => 'ppe', 'Prupe.7G163400' => 'ppe', 'Psat0s2177g0040' => 'psa', 'Psat3g174760' => 'psa', 'Psat3g192160' => 'psa', 'Psat4g058520' => 'psa', 'Psat4g096840' => 'psa', 'Psat7g037320' => 'psa', 'PSO017G1274' => 'pso', 'PSO017G5166' => 'pso', 'PSO063G4558' => 'pso', 'PSO170G4458' => 'pso', 'PSO170G5005' => 'pso', 'PSO210G6156' => 'pso', 'PSO210G6635' => 'pso', 'PSO210G7397' => 'pso', 'PSO210G7700' => 'pso', 'PSO455G0035' => 'pso', 'PSO455G0180' => 'pso', 'PSO478G4515' => 'pso', 'PSO832G1305' => 'pso', 'PSO832G3489' => 'pso', 'QL02p075247' => 'qlo', 'QL03p051148' => 'qlo', 'QL05p010313' => 'qlo', 'QL06p034627' => 'qlo', 'QL10p001889' => 'qlo', 'QL10p010846' => 'qlo', 'RcHm_v2.0_Chr1g0350621' => 'rch', 'RcHm_v2.0_Chr1g0350641' => 'rch', 'RcHm_v2.0_Chr2g0092891' => 'rch', 'RcHm_v2.0_Chr2g0100251' => 'rch', 'RcHm_v2.0_Chr2g0158661' => 'rch', 'RcHm_v2.0_Chr2g0172741' => 'rch', 'RcHm_v2.0_Chr4g0429571' => 'rch', 'RcHm_v2.0_Chr5g0042471' => 'rch', 'RcHm_v2.0_Chr7g0189451' => 'rch', 'Rhsim08G0052000' => 'rsi', 'Rhsim08G0174400' => 'rsi', 'Rhsim08G0193200' => 'rsi', 'Rhsim10G0214800' => 'rsi', 'Rhsim10G0214900' => 'rsi', 'Rhsim10G0215000' => 'rsi', 'Rhsim12G0022900' => 'rsi', 'Rhsim12G0177500' => 'rsi', 'Rhsim12G0177700' => 'rsi', 'Sabra03G0122600' => 'sbr', 'Sabra05G0097400' => 'sbr', 'Sabra12G0064100' => 'sbr', 'Sabra15G0121300' => 'sbr', 'SalBow2G0642' => 'sbo', 'SalBow5G2667' => 'sbo', 'SalBow5G4873' => 'sbo', 'SalBow8G2395' => 'sbo', 'Sc03g0003290' => 'sci', 'Sc10g0010130' => 'sci', 'Sc22g0003650' => 'sci', 'Sed0001603' => 'sed', 'Sed0004259' => 'sed', 'Sed0006789' => 'sed', 'Sed0011838' => 'sed', 'Sed0012964' => 'sed', 'Sed0016383' => 'sed', 'Sed0019010' => 'sed', 'Sed0020188' => 'sed', 'SEGI_04702' => 'sgi', 'SEGI_17231' => 'sgi', 'SEGI_18877' => 'sgi', 'SEGI_25196' => 'sgi', 'SEGI_25515' => 'sgi', 'SEGI_28445' => 'sgi', 'SEGI_37452' => 'sgi', 'SGA_v2.0_scaffold188G40336' => 'sas', 'SGA_v2.0_scaffold228G43247' => 'sas', 'SGA_v2.0_scaffold280G46853' => 'sas', 'SGA_v2.0_scaffold34G13808' => 'sas', 'SGA_v2.0_scaffold40G15576' => 'sas', 'SGA_v2.0_scaffold611G53188' => 'sas', 'SGA_v2.0_scaffold78G25461' => 'sas', 'SGA_v2.0_scaffold90G27888' => 'sas', 'SHI08601' => 'shi', 'SHI08606' => 'shi', 'SHI17117' => 'shi', 'SHI17119' => 'shi', 'SMO118G0201' => 'smo', 'SMO169G0247' => 'smo', 'SMO176G0006' => 'smo', 'SMO176G0015' => 'smo', 'SMO202G0006' => 'smo', 'SMO240G0050' => 'smo', 'SMO286G0009' => 'smo', 'SMO338G0033' => 'smo', 'SMO356G0533' => 'smo', 'SMO364G0382' => 'smo', 'SMO367G0166' => 'smo', 'SMO367G1098' => 'smo', 'Solyc01g009920.3' => 'sly', 'Solyc01g099300.3' => 'sly', 'Solyc02g084700.3' => 'sly', 'Solyc03g097520.3' => 'sly', 'Solyc06g071580.3' => 'sly', 'Solyc10g081760.3' => 'sly', 'Sopen01g005480' => 'spe', 'Sopen01g042850' => 'spe', 'Sopen02g029370' => 'spe', 'Sopen03g028280' => 'spe', 'Sopen06g027870' => 'spe', 'Sopen10g032270' => 'spe', 'Sp5g18180' => 'spa', 'Sp6g12880' => 'spa', 'Sp6g30850' => 'spa', 'Sp7g22960' => 'spa', 'Sp7g34010' => 'spa', 'SpUn1326_0010' => 'spa', 'TAR371G0242' => 'tar', 'TAR622G0638' => 'tar', 'TAR628G1548' => 'tar', 'TAR629G1079' => 'tar', 'TAR629G3413' => 'tar', 'THA.LOC104804249' => 'tha', 'THA.LOC104808315' => 'tha', 'THA.LOC104809238' => 'tha', 'THA.LOC104825484' => 'tha', 'Thecc.01G025500' => 'tca', 'Thecc.03G015800' => 'tca', 'Thecc.03G018000' => 'tca', 'Thecc.03G134800' => 'tca', 'Thecc.04G014700' => 'tca', 'Thhalv10006991m.g' => 'esa', 'Thhalv10012707m.g' => 'esa', 'Thhalv10015739m.g' => 'esa', 'Thhalv10024553m.g' => 'esa', 'Thhalv10024673m.g' => 'esa', 'Thhalv10029187m.g' => 'esa', 'TPR.G12971' => 'tpr', 'TPR.G29396' => 'tpr', 'TPR.G33376' => 'tpr', 'TPR.G35508' => 'tpr', 'TPR.G35516' => 'tpr', 'TPR.G37317' => 'tpr', 'TPR.G37389' => 'tpr', 'TPR.G37523' => 'tpr', 'TPR.G559' => 'tpr', 'TWI14G0070' => 'twi', 'TWI14G0729' => 'twi', 'TWI18G0596' => 'twi', 'TWI39G0780' => 'twi', 'TWI39G0850' => 'twi', 'TWI73G1052' => 'twi', 'unitig_52.g17485' => 'ugi', 'unitig_61.g26355' => 'ugi', 'vmacro01040' => 'vma', 'vmacro16731' => 'vma', 'vmacro18270' => 'vma', 'vmacro19142' => 'vma', 'vmacro19407' => 'vma', 'vmacro19408' => 'vma', 'vmacro21899' => 'vma', 'vmacro21900' => 'vma', 'vmacro21901' => 'vma', 'VMungo0251G0490' => 'vmu', 'VMungo0251G1748' => 'vmu', 'VMungo1309G0421' => 'vmu', 'Zm00001eb086500' => 'zma', 'Zm00001eb150680' => 'zma', 'Zm00001eb162330' => 'zma', 'Zm00001eb203130' => 'zma', 'Zm00001eb369480' => 'zma', 'Zm00001eb382340' => 'zma', 'Zm00001eb416360' => 'zma' ), 'gf_id' => 'HOM05D000902', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000902' ), 'data_identifier' => 'HOM05D000902', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000902', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '663', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02470' => 'bna', 'A01p16260' => 'bna', 'A02p01680' => 'bna', 'A03p16600' => 'bna', 'A03p55660' => 'bna', 'A03p64160' => 'bna', 'A03p64170' => 'bna', 'A08p31900' => 'bna', 'A09p59530' => 'bna', 'A10p08230' => 'bna', 'A10p25090' => 'bna', 'Aa31LG3G7100' => 'aar', 'Aa31LG3G7110' => 'aar', 'Aa31LG6G13160' => 'aar', 'Aa31LG7G10770' => 'aar', 'Aa31LG7G3830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2723' => 'aag', 'Actinidia08045' => 'ach', 'Actinidia08888' => 'ach', 'Actinidia18333' => 'ach', 'Actinidia19334' => 'ach', 'Actinidia25552' => 'ach', 'Actinidia26089' => 'ach', 'Actinidia30615' => 'ach', 'Actinidia30616' => 'ach', 'Actinidia33083' => 'ach', 'Actinidia35762' => 'ach', 'Ah.02g110620' => 'amhyb', 'Ah.11g046390' => 'amhyb', 'AL1G31670' => 'aly', 'AL6G23730' => 'aly', 'AL7G14740' => 'aly', 'AL7G14750' => 'aly', 'AL7G14760' => 'aly', 'AL7G28220' => 'aly', 'AL8G24940' => 'aly', 'Aqoxy3G01665' => 'aox', 'Aqoxy3G02853' => 'aox', 'Aqoxy5G01513' => 'aox', 'Aqoxy5G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8SKA4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ75LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKDA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0LJZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7REX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZP4YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWX7I5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2QKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS0L9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPCD8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q161UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC7XCF' => 'arhy', 'AT1G19100' => 'ath', 'AT4G24970' => 'ath', 'AT4G36270' => 'ath', 'AT4G36280' => 'ath', 'AT4G36290' => 'ath', 'AT5G13130' => 'ath', 'AT5G50780' => 'ath', 'ATR0582G266' => 'atr', 'ATR0661G195' => 'atr', 'ATR1152G031' => 'atr', 'Atru.chr11.2382' => 'acertr', 'Atru.chr12.2337' => 'acertr', 'Atru.chr3.744' => 'acertr', 'Atru.chr6.1870' => 'acertr', 'Atru.chr9.2515' => 'acertr', 'AUR62004120' => 'cqu', 'AUR62005667' => 'cqu', 'AUR62007634' => 'cqu', 'AUR62008186' => 'cqu', 'AUR62008187' => 'cqu', 'AUR62008188' => 'cqu', 'AUR62027954' => 'cqu', 'AUR62028766' => 'cqu', 'AUR62028767' => 'cqu', 'AUR62028768' => 'cqu', 'AUR62028886' => 'cqu', 'AUR62029563' => 'cqu', 'AUR62038832' => 'cqu', 'BcaB01g04149' => 'bca', 'BcaB03g12940' => 'bca', 'BcaB03g13090' => 'bca', 'BcaB03g14466' => 'bca', 'BcaB05g24035' => 'bca', 'BcaC01g06050' => 'bca', 'BcaC04g19148' => 'bca', 'BcaC04g20761' => 'bca', 'BcaC06g32845' => 'bca', 'BcaC07g41274' => 'bca', 'BcaC09g50827' => 'bca', 'BcaNung00741' => 'bca', 'BcaNung00742' => 'bca', 'BcaNung01859' => 'bca', 'BcaNung03985' => 'bca', 'BcaNung03989' => 'bca', 'BcaNung05661' => 'bca', 'BolC1t00257H' => 'bol', 'BolC1t01956H' => 'bol', 'BolC2t06534H' => 'bol', 'BolC3t14334H' => 'bol', 'BolC5t30451H' => 'bol', 'BolC7t45880H' => 'bol', 'BolC7t46586H' => 'bol', 'BolC8t49301H' => 'bol', 'BolC8t51837H' => 'bol', 'BolC9t56822H' => 'bol', 'BolC9t59235H' => 'bol', 'BraA01t00234Z' => 'bra', 'BraA01t01563Z' => 'bra', 'BraA02t05147Z' => 'bra', 'BraA03t10947Z' => 'bra', 'BraA03t14633Z' => 'bra', 'BraA08t35112Z' => 'bra', 'BraA09t41330Z' => 'bra', 'BraA10t44570Z' => 'bra', 'C01p02670' => 'bna', 'C01p20260' => 'bna', 'C02p05890' => 'bna', 'C03p19530' => 'bna', 'C05p17470' => 'bna', 'C07p53900' => 'bna', 'C07p61630' => 'bna', 'C08p16800' => 'bna', 'C08p42810' => 'bna', 'C09p39480' => 'bna', 'C09p63980' => 'bna', 'CAN.G1001.7' => 'can', 'CAN.G1034.55' => 'can', 'CAN.G143.7' => 'can', 'CAN.G3340.1' => 'can', 'CAN.G358.19' => 'can', 'CAN.G373.2' => 'can', 'CAN.G674.16' => 'can', 'CAN.G674.17' => 'can', 'CAN.G674.18' => 'can', 'CAN.G732.2' => 'can', 'CAN.G732.3' => 'can', 'CAN.G993.39' => 'can', 'CANSAT01G2052' => 'cansat', 'CANSAT80G0070' => 'cansat', 'CANSAT80G0483' => 'cansat', 'CANSAT80G0625' => 'cansat', 'CARHR019690' => 'chi', 'CARHR080280' => 'chi', 'CARHR152750' => 'chi', 'CARHR152760' => 'chi', 'CARHR152770' => 'chi', 'CARHR200340' => 'chi', 'CARHR232370' => 'chi', 'CARHR244670' => 'chi', 'CARHR244680' => 'chi', 'CARHR257520' => 'chi', 'Carub.0001s1872' => 'cru', 'Carub.0006s1130' => 'cru', 'Carub.0007s0396' => 'cru', 'Carub.0007s0397' => 'cru', 'Carub.0007s1608' => 'cru', 'Carub.0008s1068' => 'cru', 'Carub.0008s1077' => 'cru', 'Ca_16158_v3' => 'car', 'Ca_17571_v3' => 'car', 'Ca_21936_v3' => 'car', 'Ca_22350_v3' => 'car', 'CBR_g22445' => 'cbr', 'CBR_g26290' => 'cbr', 'Cc04_g09610' => 'ccan', 'Cc04_g12280' => 'ccan', 'Cc07_g10230' => 'ccan', 'CDE02G0093' => 'cde', 'CDE02G0701' => 'cde', 'CDE04G1050' => 'cde', 'CDE05G1833' => 'cde', 'CDE05G3058' => 'cde', 'CDE05G3380' => 'cde', 'CDE06G0536' => 'cde', 'Cfa006923' => 'cfa', 'Cfa009402' => 'cfa', 'Cfa018751' => 'cfa', 'Cfa019164' => 'cfa', 'Cfa022935' => 'cfa', 'Ciclev10019081m.g' => 'ccl', 'Ciclev10025076m.g' => 'ccl', 'Ciclev10030712m.g' => 'ccl', 'Ciclev10033760m.g' => 'ccl', 'CiPaw.05G105600' => 'cil', 'CiPaw.08G136700' => 'cil', 'CiPaw.11G003900' => 'cil', 'CiPaw.11G023700' => 'cil', 'CiPaw.12G003700' => 'cil', 'ClCG06G017100' => 'cla', 'ClCG06G018110' => 'cla', 'ClCG07G008800' => 'cla', 'ClCG07G015330' => 'cla', 'COL.COLO4_13698' => 'col', 'COL.COLO4_16659' => 'col', 'COL.COLO4_21986' => 'col', 'COL.COLO4_24049' => 'col', 'COL.COLO4_29061' => 'col', 'COL.COLO4_29075' => 'col', 'COL.COLO4_30094' => 'col', 'Cpa.g.c33689' => 'cpa', 'Cpa.g.sc108.39' => 'cpa', 'Cpa.g.sc108.41' => 'cpa', 'Cpa.g.sc1163.1' => 'cpa', 'Cpa.g.sc4.155' => 'cpa', 'Cpa.g.sc6.194' => 'cpa', 'CsaV3_1G000340' => 'csa', 'CsaV3_1G001400' => 'csa', 'CsaV3_4G002220' => 'csa', 'CsaV3_4G005370' => 'csa', 'CSS0007487' => 'camsi', 'CSS0008066' => 'camsi', 'CSS0009120' => 'camsi', 'CSS0015512' => 'camsi', 'CSS0022409' => 'camsi', 'CSS0025358' => 'camsi', 'CSS0044547' => 'camsi', 'DCAR_013057' => 'dca', 'DCAR_015058' => 'dca', 'DCAR_016027' => 'dca', 'DCAR_017327' => 'dca', 'DCAR_020743' => 'dca', 'DCAR_026157' => 'dca', 'DCAR_032339' => 'dca', 'DCAR_032340' => 'dca', 'Dinv11200' => 'din', 'Dinv11201' => 'din', 'Dinv20631' => 'din', 'Dinv23182' => 'din', 'Dinv33466' => 'din', 'Dinv33583' => 'din', 'Dinv38565' => 'din', 'Duzib068G0200' => 'dzi', 'Duzib147G0132' => 'dzi', 'Duzib147G0635' => 'dzi', 'Duzib205G1670' => 'dzi', 'Duzib251G0606' => 'dzi', 'ECA232G3336' => 'eca', 'ECA232G3763' => 'eca', 'ECA232G4845' => 'eca', 'ECA234G1607' => 'eca', 'ECA246G0932' => 'eca', 'ECA247G0781' => 'eca', 'ECA247G1932' => 'eca', 'ECA247G2079' => 'eca', 'ECA247G3338' => 'eca', 'ECA247G4115' => 'eca', 'EL10Ac3g06552' => 'bvu', 'EL10Ac5g10721' => 'bvu', 'EL10Ac5g10722' => 'bvu', 'EL10Ac5g10723' => 'bvu', 'EL10Ac5g11361' => 'bvu', 'EL10Ac6g13553' => 'bvu', 'EL10As8g23872' => 'bvu', 'Eucgr.B00250' => 'egr', 'Eucgr.B00251' => 'egr', 'Eucgr.B03533' => 'egr', 'Eucgr.I02381' => 'egr', 'Eucgr.K02700' => 'egr', 'FAN02G0174' => 'fan', 'FAN02G3146' => 'fan', 'FAN04G1672' => 'fan', 'FAN04G2273' => 'fan', 'FAN05G2791' => 'fan', 'FAN05G4035' => 'fan', 'FAN07G0834' => 'fan', 'FAN08G1198' => 'fan', 'FAN09G4182' => 'fan', 'FAN12G0496' => 'fan', 'FAN13G1027' => 'fan', 'FAN13G2951' => 'fan', 'FAN14G0705' => 'fan', 'FAN14G0720' => 'fan', 'FAN17G0201' => 'fan', 'FAN17G2665' => 'fan', 'FAN18G1456' => 'fan', 'FAN18G1525' => 'fan', 'FAN18G3500' => 'fan', 'FAN28G2670' => 'fan', 'FvH4_1g12391' => 'fve', 'FvH4_4g23220' => 'fve', 'FvH4_5g08810' => 'fve', 'FvH4_5g28960' => 'fve', 'FvH4_6g42820' => 'fve', 'FvH4_6g51110' => 'fve', 'Glyma.02G051802' => 'gma', 'Glyma.04G185300' => 'gma', 'Glyma.05G202900' => 'gma', 'Glyma.08G010300' => 'gma', 'Glyma.16G131900' => 'gma', 'Glyma.17G087900' => 'gma', 'Gohir.A07G048600' => 'ghi', 'Gohir.A11G179000' => 'ghi', 'Gohir.A12G140900' => 'ghi', 'Gohir.A12G140950' => 'ghi', 'Gohir.A12G191700' => 'ghi', 'Gohir.A13G086300' => 'ghi', 'Gohir.D07G052900' => 'ghi', 'Gohir.D11G186600' => 'ghi', 'Gohir.D12G145575' => 'ghi', 'Gohir.D12G145650' => 'ghi', 'Gohir.D12G145725' => 'ghi', 'Gohir.D12G194050' => 'ghi', 'Gohir.D13G091800' => 'ghi', 'Gorai.001G055900' => 'gra', 'Gorai.007G198400' => 'gra', 'Gorai.008G157000' => 'gra', 'Gorai.008G157100' => 'gra', 'Gorai.008G208700' => 'gra', 'Gorai.010G138700' => 'gra', 'GSVIVG01000977001' => 'vvi', 'GSVIVG01007708001' => 'vvi', 'GSVIVG01008587001' => 'vvi', 'GSVIVG01018849001' => 'vvi', 'GSVIVG01032432001' => 'vvi', 'HanXRQChr02g0034131' => 'han', 'HanXRQChr02g0035981' => 'han', 'HanXRQChr02g0035991' => 'han', 'HanXRQChr05g0155611' => 'han', 'HanXRQChr05g0155621' => 'han', 'HanXRQChr08g0236501' => 'han', 'HanXRQChr09g0261321' => 'han', 'HanXRQChr09g0272081' => 'han', 'HanXRQChr10g0310741' => 'han', 'HanXRQChr11g0325591' => 'han', 'HanXRQChr12g0385691' => 'han', 'HanXRQChr13g0387801' => 'han', 'HanXRQChr15g0463011' => 'han', 'Haze_03826' => 'cav', 'Haze_03827' => 'cav', 'Haze_07183' => 'cav', 'Haze_07537' => 'cav', 'Haze_07539' => 'cav', 'Haze_12461' => 'cav', 'Haze_16115' => 'cav', 'Haze_16808' => 'cav', 'Haze_18531' => 'cav', 'Hma1.2p1_0046F.1_g026700' => 'hma', 'Hma1.2p1_0046F.1_g026710' => 'hma', 'Hma1.2p1_0168F.1_g074340' => 'hma', 'Hma1.2p1_0266F.1_g107030' => 'hma', 'Hma1.2p1_0266F.1_g107060' => 'hma', 'Hma1.2p1_0275F.1_g110510' => 'hma', 'Hma1.2p1_0592F.1_g185490' => 'hma', 'Hma1.2p1_0592F.1_g185500' => 'hma', 'Hma1.2p1_0592F.1_g185510' => 'hma', 'Hma1.2p1_0592F.1_g185520' => 'hma', 'Hma1.2p1_0592F.1_g185530' => 'hma', 'Hma1.2p1_0818F.1_g223450' => 'hma', 'HPP92_009708' => 'vpl', 'HPP92_009793' => 'vpl', 'HPP92_009796' => 'vpl', 'HPP92_009797' => 'vpl', 'HPP92_014940' => 'vpl', 'HPP92_014988' => 'vpl', 'Hund02463' => 'sun', 'Hund02760' => 'sun', 'Hund05071' => 'sun', 'Hund10108' => 'sun', 'Hund11204' => 'sun', 'Hund14016' => 'sun', 'Hund16464' => 'sun', 'Lalb_Chr09g0333391' => 'lal', 'Lalb_Chr11g0070461' => 'lal', 'Lalb_Chr12g0201671' => 'lal', 'Lalb_Chr13g0297161' => 'lal', 'Lj1g0002823' => 'lja', 'Lj3C1074T6' => 'lonja', 'Lj4A212T28' => 'lonja', 'Lj4g0005516' => 'lja', 'Lj4g0013705' => 'lja', 'Lj4g0027865' => 'lja', 'Lj5C92G16' => 'lonja', 'Lj5C92T12' => 'lonja', 'Lj7C596T3' => 'lonja', 'Lj9A446G59' => 'lonja', 'Lj9A482G21' => 'lonja', 'Lsat_1_v5_gn_1_28261' => 'lsa', 'Lsat_1_v5_gn_1_28281' => 'lsa', 'Lsat_1_v5_gn_1_32721' => 'lsa', 'Lsat_1_v5_gn_4_151760' => 'lsa', 'Lsat_1_v5_gn_4_2120' => 'lsa', 'Lsat_1_v5_gn_4_75761' => 'lsa', 'Lsat_1_v5_gn_5_10920' => 'lsa', 'Manes.02G099900' => 'mes', 'Manes.11G096200' => 'mes', 'Manes.12G007200' => 'mes', 'Manes.14G048300' => 'mes', 'Manes.17G114700' => 'mes', 'Mapoly0002s0070' => 'mpo', 'Mapoly0029s0099' => 'mpo', 'MBI07_g24742_MAGBIO' => 'mbi', 'MBI10_g27988_MAGBIO' => 'mbi', 'MBI11_g13057_MAGBIO' => 'mbi', 'MD02G1137200' => 'mdo', 'MD06G1137200' => 'mdo', 'MD07G1122300' => 'mdo', 'MD09G1078200' => 'mdo', 'MD13G1123700' => 'mdo', 'MD14G1151900' => 'mdo', 'MD17G1030900' => 'mdo', 'MD17G1068200' => 'mdo', 'MD17G1068600' => 'mdo', 'Medtr3g077540' => 'mtr', 'Medtr4g105530' => 'mtr', 'Medtr8g076580' => 'mtr', 'Medtr8g076590' => 'mtr', 'Medtr8g096410' => 'mtr', 'MELO3C016411.2' => 'cme', 'MELO3C017780.2' => 'cme', 'MELO3C022560.2' => 'cme', 'MELO3C026187.2' => 'cme', 'MELO3C026286.2' => 'cme', 'MELO3C032854.2' => 'cme', 'Migut.H02495' => 'egut', 'Migut.I00561' => 'egut', 'Migut.K01015' => 'egut', 'Migut.K01016' => 'egut', 'Migut.L00743' => 'egut', 'Migut.L00744' => 'egut', 'Migut.L00746' => 'egut', 'Migut.L00798' => 'egut', 'Migut.L00799' => 'egut', 'Migut.N02096' => 'egut', 'MSTRG.11259' => 'ama', 'MSTRG.23142' => 'ama', 'MSTRG.2499' => 'ama', 'Nitab4.5_0000003g0730' => 'nta', 'Nitab4.5_0000137g0020' => 'nta', 'Nitab4.5_0000721g0210' => 'nta', 'Nitab4.5_0000723g0050' => 'nta', 'Nitab4.5_0000913g0070' => 'nta', 'Nitab4.5_0001332g0040' => 'nta', 'Nitab4.5_0001771g0050' => 'nta', 'Nitab4.5_0001918g0050' => 'nta', 'Nitab4.5_0002686g0030' => 'nta', 'Nitab4.5_0003156g0020' => 'nta', 'Nitab4.5_0003383g0040' => 'nta', 'Nitab4.5_0003918g0010' => 'nta', 'Nitab4.5_0006760g0010' => 'nta', 'Nn1g05981' => 'nnu', 'Nn1g06288' => 'nnu', 'Nn3g16371' => 'nnu', 'Nn3g16786' => 'nnu', 'Nn4g22232' => 'nnu', 'Oeu005144.1' => 'oeu', 'Oeu005145.1' => 'oeu', 'Oeu011348.1' => 'oeu', 'Oeu016415.1' => 'oeu', 'Oeu023501.1' => 'oeu', 'Oeu044473.1' => 'oeu', 'Oeu048892.2' => 'oeu', 'Os01g0549200' => 'osa', 'Os02g0469300' => 'osa', 'Os04g0311100' => 'osa', 'Os06g0474900' => 'osa', 'Os10g0181700' => 'osa', 'Os11g0454800' => 'osa', 'Peaxi162Scf00037g00714' => 'pax', 'Peaxi162Scf00084g01217' => 'pax', 'Peaxi162Scf00257g00217' => 'pax', 'Peaxi162Scf00516g00215' => 'pax', 'Peaxi162Scf00689g00123' => 'pax', 'PGR044G2719' => 'pgr', 'PGR083G1360' => 'pgr', 'PGR102G2849' => 'pgr', 'PGR119G2534' => 'pgr', 'PGSC0003DMG400003538' => 'stu', 'PGSC0003DMG400028138' => 'stu', 'PGSC0003DMG400031732' => 'stu', 'PGSC0003DMG400038165' => 'stu', 'Phvul.002G284600' => 'pvu', 'Phvul.003G258200' => 'pvu', 'Phvul.009G176500' => 'pvu', 'Potri.003G167201' => 'ptr', 'Potri.005G118400' => 'ptr', 'Potri.012G089000' => 'ptr', 'Potri.012G102800' => 'ptr', 'Potri.015G079400' => 'ptr', 'Potri.015G100900' => 'ptr', 'Pp3c14_9810' => 'ppa', 'Pp3c15_10450' => 'ppa', 'Pp3c20_19150' => 'ppa', 'Pp3c23_12740' => 'ppa', 'Pp3c23_6310' => 'ppa', 'Pp3c24_3720' => 'ppa', 'Pp3c27_2580' => 'ppa', 'Pp3c9_8990' => 'ppa', 'PRCOL_00002854' => 'pco', 'Prupe.1G221200' => 'ppe', 'Prupe.3G289000' => 'ppe', 'Prupe.5G147000' => 'ppe', 'Prupe.6G157300' => 'ppe', 'Prupe.7G163400' => 'ppe', 'Psat0s2177g0040' => 'psa', 'Psat3g174760' => 'psa', 'Psat3g192160' => 'psa', 'Psat4g058520' => 'psa', 'Psat4g096840' => 'psa', 'Psat7g037320' => 'psa', 'PSO017G1274' => 'pso', 'PSO017G5166' => 'pso', 'PSO063G4558' => 'pso', 'PSO170G4458' => 'pso', 'PSO170G5005' => 'pso', 'PSO210G6156' => 'pso', 'PSO210G6635' => 'pso', 'PSO210G7397' => 'pso', 'PSO210G7700' => 'pso', 'PSO455G0035' => 'pso', 'PSO455G0180' => 'pso', 'PSO478G4515' => 'pso', 'PSO832G1305' => 'pso', 'PSO832G3489' => 'pso', 'QL02p075247' => 'qlo', 'QL03p051148' => 'qlo', 'QL05p010313' => 'qlo', 'QL06p034627' => 'qlo', 'QL10p001889' => 'qlo', 'QL10p010846' => 'qlo', 'RcHm_v2.0_Chr1g0350621' => 'rch', 'RcHm_v2.0_Chr1g0350641' => 'rch', 'RcHm_v2.0_Chr2g0092891' => 'rch', 'RcHm_v2.0_Chr2g0100251' => 'rch', 'RcHm_v2.0_Chr2g0158661' => 'rch', 'RcHm_v2.0_Chr2g0172741' => 'rch', 'RcHm_v2.0_Chr4g0429571' => 'rch', 'RcHm_v2.0_Chr5g0042471' => 'rch', 'RcHm_v2.0_Chr7g0189451' => 'rch', 'Rhsim08G0052000' => 'rsi', 'Rhsim08G0174400' => 'rsi', 'Rhsim08G0193200' => 'rsi', 'Rhsim10G0214800' => 'rsi', 'Rhsim10G0214900' => 'rsi', 'Rhsim10G0215000' => 'rsi', 'Rhsim12G0022900' => 'rsi', 'Rhsim12G0177500' => 'rsi', 'Rhsim12G0177700' => 'rsi', 'Sabra03G0122600' => 'sbr', 'Sabra05G0097400' => 'sbr', 'Sabra12G0064100' => 'sbr', 'Sabra15G0121300' => 'sbr', 'SalBow2G0642' => 'sbo', 'SalBow5G2667' => 'sbo', 'SalBow5G4873' => 'sbo', 'SalBow8G2395' => 'sbo', 'Sc03g0003290' => 'sci', 'Sc10g0010130' => 'sci', 'Sc22g0003650' => 'sci', 'Sed0001603' => 'sed', 'Sed0004259' => 'sed', 'Sed0006789' => 'sed', 'Sed0011838' => 'sed', 'Sed0012964' => 'sed', 'Sed0016383' => 'sed', 'Sed0019010' => 'sed', 'Sed0020188' => 'sed', 'SEGI_04702' => 'sgi', 'SEGI_17231' => 'sgi', 'SEGI_18877' => 'sgi', 'SEGI_25196' => 'sgi', 'SEGI_25515' => 'sgi', 'SEGI_28445' => 'sgi', 'SEGI_37452' => 'sgi', 'SGA_v2.0_scaffold188G40336' => 'sas', 'SGA_v2.0_scaffold228G43247' => 'sas', 'SGA_v2.0_scaffold280G46853' => 'sas', 'SGA_v2.0_scaffold34G13808' => 'sas', 'SGA_v2.0_scaffold40G15576' => 'sas', 'SGA_v2.0_scaffold611G53188' => 'sas', 'SGA_v2.0_scaffold78G25461' => 'sas', 'SGA_v2.0_scaffold90G27888' => 'sas', 'SHI08601' => 'shi', 'SHI08606' => 'shi', 'SHI17117' => 'shi', 'SHI17119' => 'shi', 'SMO118G0201' => 'smo', 'SMO169G0247' => 'smo', 'SMO176G0006' => 'smo', 'SMO176G0015' => 'smo', 'SMO202G0006' => 'smo', 'SMO240G0050' => 'smo', 'SMO286G0009' => 'smo', 'SMO338G0033' => 'smo', 'SMO356G0533' => 'smo', 'SMO364G0382' => 'smo', 'SMO367G0166' => 'smo', 'SMO367G1098' => 'smo', 'Solyc01g009920.3' => 'sly', 'Solyc01g099300.3' => 'sly', 'Solyc02g084700.3' => 'sly', 'Solyc03g097520.3' => 'sly', 'Solyc06g071580.3' => 'sly', 'Solyc10g081760.3' => 'sly', 'Sopen01g005480' => 'spe', 'Sopen01g042850' => 'spe', 'Sopen02g029370' => 'spe', 'Sopen03g028280' => 'spe', 'Sopen06g027870' => 'spe', 'Sopen10g032270' => 'spe', 'Sp5g18180' => 'spa', 'Sp6g12880' => 'spa', 'Sp6g30850' => 'spa', 'Sp7g22960' => 'spa', 'Sp7g34010' => 'spa', 'SpUn1326_0010' => 'spa', 'TAR371G0242' => 'tar', 'TAR622G0638' => 'tar', 'TAR628G1548' => 'tar', 'TAR629G1079' => 'tar', 'TAR629G3413' => 'tar', 'THA.LOC104804249' => 'tha', 'THA.LOC104808315' => 'tha', 'THA.LOC104809238' => 'tha', 'THA.LOC104825484' => 'tha', 'Thecc.01G025500' => 'tca', 'Thecc.03G015800' => 'tca', 'Thecc.03G018000' => 'tca', 'Thecc.03G134800' => 'tca', 'Thecc.04G014700' => 'tca', 'Thhalv10006991m.g' => 'esa', 'Thhalv10012707m.g' => 'esa', 'Thhalv10015739m.g' => 'esa', 'Thhalv10024553m.g' => 'esa', 'Thhalv10024673m.g' => 'esa', 'Thhalv10029187m.g' => 'esa', 'TPR.G12971' => 'tpr', 'TPR.G29396' => 'tpr', 'TPR.G33376' => 'tpr', 'TPR.G35508' => 'tpr', 'TPR.G35516' => 'tpr', 'TPR.G37317' => 'tpr', 'TPR.G37389' => 'tpr', 'TPR.G37523' => 'tpr', 'TPR.G559' => 'tpr', 'TWI14G0070' => 'twi', 'TWI14G0729' => 'twi', 'TWI18G0596' => 'twi', 'TWI39G0780' => 'twi', 'TWI39G0850' => 'twi', 'TWI73G1052' => 'twi', 'unitig_52.g17485' => 'ugi', 'unitig_61.g26355' => 'ugi', 'vmacro01040' => 'vma', 'vmacro16731' => 'vma', 'vmacro18270' => 'vma', 'vmacro19142' => 'vma', 'vmacro19407' => 'vma', 'vmacro19408' => 'vma', 'vmacro21899' => 'vma', 'vmacro21900' => 'vma', 'vmacro21901' => 'vma', 'VMungo0251G0490' => 'vmu', 'VMungo0251G1748' => 'vmu', 'VMungo1309G0421' => 'vmu', 'Zm00001eb086500' => 'zma', 'Zm00001eb150680' => 'zma', 'Zm00001eb162330' => 'zma', 'Zm00001eb203130' => 'zma', 'Zm00001eb369480' => 'zma', 'Zm00001eb382340' => 'zma', 'Zm00001eb416360' => 'zma' ) $gf_id = 'HOM05D000902' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000902' ) $data_identifier = 'HOM05D000902' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 13, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 10, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 6, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 9, 'hma' => (int) 12, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 4, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 6, 'ppa' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 6, 'rch' => (int) 9, 'rsi' => (int) 9, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 12, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 3, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416360' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000902', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '663', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02470' => 'bna', 'A01p16260' => 'bna', 'A02p01680' => 'bna', 'A03p16600' => 'bna', 'A03p55660' => 'bna', 'A03p64160' => 'bna', 'A03p64170' => 'bna', 'A08p31900' => 'bna', 'A09p59530' => 'bna', 'A10p08230' => 'bna', 'A10p25090' => 'bna', 'Aa31LG3G7100' => 'aar', 'Aa31LG3G7110' => 'aar', 'Aa31LG6G13160' => 'aar', 'Aa31LG7G10770' => 'aar', 'Aa31LG7G3830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2723' => 'aag', 'Actinidia08045' => 'ach', 'Actinidia08888' => 'ach', 'Actinidia18333' => 'ach', 'Actinidia19334' => 'ach', 'Actinidia25552' => 'ach', 'Actinidia26089' => 'ach', 'Actinidia30615' => 'ach', 'Actinidia30616' => 'ach', 'Actinidia33083' => 'ach', 'Actinidia35762' => 'ach', 'Ah.02g110620' => 'amhyb', 'Ah.11g046390' => 'amhyb', 'AL1G31670' => 'aly', 'AL6G23730' => 'aly', 'AL7G14740' => 'aly', 'AL7G14750' => 'aly', 'AL7G14760' => 'aly', 'AL7G28220' => 'aly', 'AL8G24940' => 'aly', 'Aqoxy3G01665' => 'aox', 'Aqoxy3G02853' => 'aox', 'Aqoxy5G01513' => 'aox', 'Aqoxy5G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8SKA4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ75LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKDA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0LJZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7REX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZP4YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWX7I5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2QKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS0L9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPCD8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q161UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC7XCF' => 'arhy', 'AT1G19100' => 'ath', 'AT4G24970' => 'ath', 'AT4G36270' => 'ath', 'AT4G36280' => 'ath', 'AT4G36290' => 'ath', 'AT5G13130' => 'ath', 'AT5G50780' => 'ath', 'ATR0582G266' => 'atr', 'ATR0661G195' => 'atr', 'ATR1152G031' => 'atr', 'Atru.chr11.2382' => 'acertr', 'Atru.chr12.2337' => 'acertr', 'Atru.chr3.744' => 'acertr', 'Atru.chr6.1870' => 'acertr', 'Atru.chr9.2515' => 'acertr', 'AUR62004120' => 'cqu', 'AUR62005667' => 'cqu', 'AUR62007634' => 'cqu', 'AUR62008186' => 'cqu', 'AUR62008187' => 'cqu', 'AUR62008188' => 'cqu', 'AUR62027954' => 'cqu', 'AUR62028766' => 'cqu', 'AUR62028767' => 'cqu', 'AUR62028768' => 'cqu', 'AUR62028886' => 'cqu', 'AUR62029563' => 'cqu', 'AUR62038832' => 'cqu', 'BcaB01g04149' => 'bca', 'BcaB03g12940' => 'bca', 'BcaB03g13090' => 'bca', 'BcaB03g14466' => 'bca', 'BcaB05g24035' => 'bca', 'BcaC01g06050' => 'bca', 'BcaC04g19148' => 'bca', 'BcaC04g20761' => 'bca', 'BcaC06g32845' => 'bca', 'BcaC07g41274' => 'bca', 'BcaC09g50827' => 'bca', 'BcaNung00741' => 'bca', 'BcaNung00742' => 'bca', 'BcaNung01859' => 'bca', 'BcaNung03985' => 'bca', 'BcaNung03989' => 'bca', 'BcaNung05661' => 'bca', 'BolC1t00257H' => 'bol', 'BolC1t01956H' => 'bol', 'BolC2t06534H' => 'bol', 'BolC3t14334H' => 'bol', 'BolC5t30451H' => 'bol', 'BolC7t45880H' => 'bol', 'BolC7t46586H' => 'bol', 'BolC8t49301H' => 'bol', 'BolC8t51837H' => 'bol', 'BolC9t56822H' => 'bol', 'BolC9t59235H' => 'bol', 'BraA01t00234Z' => 'bra', 'BraA01t01563Z' => 'bra', 'BraA02t05147Z' => 'bra', 'BraA03t10947Z' => 'bra', 'BraA03t14633Z' => 'bra', 'BraA08t35112Z' => 'bra', 'BraA09t41330Z' => 'bra', 'BraA10t44570Z' => 'bra', 'C01p02670' => 'bna', 'C01p20260' => 'bna', 'C02p05890' => 'bna', 'C03p19530' => 'bna', 'C05p17470' => 'bna', 'C07p53900' => 'bna', 'C07p61630' => 'bna', 'C08p16800' => 'bna', 'C08p42810' => 'bna', 'C09p39480' => 'bna', 'C09p63980' => 'bna', 'CAN.G1001.7' => 'can', 'CAN.G1034.55' => 'can', 'CAN.G143.7' => 'can', 'CAN.G3340.1' => 'can', 'CAN.G358.19' => 'can', 'CAN.G373.2' => 'can', 'CAN.G674.16' => 'can', 'CAN.G674.17' => 'can', 'CAN.G674.18' => 'can', 'CAN.G732.2' => 'can', 'CAN.G732.3' => 'can', 'CAN.G993.39' => 'can', 'CANSAT01G2052' => 'cansat', 'CANSAT80G0070' => 'cansat', 'CANSAT80G0483' => 'cansat', 'CANSAT80G0625' => 'cansat', 'CARHR019690' => 'chi', 'CARHR080280' => 'chi', 'CARHR152750' => 'chi', 'CARHR152760' => 'chi', 'CARHR152770' => 'chi', 'CARHR200340' => 'chi', 'CARHR232370' => 'chi', 'CARHR244670' => 'chi', 'CARHR244680' => 'chi', 'CARHR257520' => 'chi', 'Carub.0001s1872' => 'cru', 'Carub.0006s1130' => 'cru', 'Carub.0007s0396' => 'cru', 'Carub.0007s0397' => 'cru', 'Carub.0007s1608' => 'cru', 'Carub.0008s1068' => 'cru', 'Carub.0008s1077' => 'cru', 'Ca_16158_v3' => 'car', 'Ca_17571_v3' => 'car', 'Ca_21936_v3' => 'car', 'Ca_22350_v3' => 'car', 'CBR_g22445' => 'cbr', 'CBR_g26290' => 'cbr', 'Cc04_g09610' => 'ccan', 'Cc04_g12280' => 'ccan', 'Cc07_g10230' => 'ccan', 'CDE02G0093' => 'cde', 'CDE02G0701' => 'cde', 'CDE04G1050' => 'cde', 'CDE05G1833' => 'cde', 'CDE05G3058' => 'cde', 'CDE05G3380' => 'cde', 'CDE06G0536' => 'cde', 'Cfa006923' => 'cfa', 'Cfa009402' => 'cfa', 'Cfa018751' => 'cfa', 'Cfa019164' => 'cfa', 'Cfa022935' => 'cfa', 'Ciclev10019081m.g' => 'ccl', 'Ciclev10025076m.g' => 'ccl', 'Ciclev10030712m.g' => 'ccl', 'Ciclev10033760m.g' => 'ccl', 'CiPaw.05G105600' => 'cil', 'CiPaw.08G136700' => 'cil', 'CiPaw.11G003900' => 'cil', 'CiPaw.11G023700' => 'cil', 'CiPaw.12G003700' => 'cil', 'ClCG06G017100' => 'cla', 'ClCG06G018110' => 'cla', 'ClCG07G008800' => 'cla', 'ClCG07G015330' => 'cla', 'COL.COLO4_13698' => 'col', 'COL.COLO4_16659' => 'col', 'COL.COLO4_21986' => 'col', 'COL.COLO4_24049' => 'col', 'COL.COLO4_29061' => 'col', 'COL.COLO4_29075' => 'col', 'COL.COLO4_30094' => 'col', 'Cpa.g.c33689' => 'cpa', 'Cpa.g.sc108.39' => 'cpa', 'Cpa.g.sc108.41' => 'cpa', 'Cpa.g.sc1163.1' => 'cpa', 'Cpa.g.sc4.155' => 'cpa', 'Cpa.g.sc6.194' => 'cpa', 'CsaV3_1G000340' => 'csa', 'CsaV3_1G001400' => 'csa', 'CsaV3_4G002220' => 'csa', 'CsaV3_4G005370' => 'csa', 'CSS0007487' => 'camsi', 'CSS0008066' => 'camsi', 'CSS0009120' => 'camsi', 'CSS0015512' => 'camsi', 'CSS0022409' => 'camsi', 'CSS0025358' => 'camsi', 'CSS0044547' => 'camsi', 'DCAR_013057' => 'dca', 'DCAR_015058' => 'dca', 'DCAR_016027' => 'dca', 'DCAR_017327' => 'dca', 'DCAR_020743' => 'dca', 'DCAR_026157' => 'dca', 'DCAR_032339' => 'dca', 'DCAR_032340' => 'dca', 'Dinv11200' => 'din', 'Dinv11201' => 'din', 'Dinv20631' => 'din', 'Dinv23182' => 'din', 'Dinv33466' => 'din', 'Dinv33583' => 'din', 'Dinv38565' => 'din', 'Duzib068G0200' => 'dzi', 'Duzib147G0132' => 'dzi', 'Duzib147G0635' => 'dzi', 'Duzib205G1670' => 'dzi', 'Duzib251G0606' => 'dzi', 'ECA232G3336' => 'eca', 'ECA232G3763' => 'eca', 'ECA232G4845' => 'eca', 'ECA234G1607' => 'eca', 'ECA246G0932' => 'eca', 'ECA247G0781' => 'eca', 'ECA247G1932' => 'eca', 'ECA247G2079' => 'eca', 'ECA247G3338' => 'eca', 'ECA247G4115' => 'eca', 'EL10Ac3g06552' => 'bvu', 'EL10Ac5g10721' => 'bvu', 'EL10Ac5g10722' => 'bvu', 'EL10Ac5g10723' => 'bvu', 'EL10Ac5g11361' => 'bvu', 'EL10Ac6g13553' => 'bvu', 'EL10As8g23872' => 'bvu', 'Eucgr.B00250' => 'egr', 'Eucgr.B00251' => 'egr', 'Eucgr.B03533' => 'egr', 'Eucgr.I02381' => 'egr', 'Eucgr.K02700' => 'egr', 'FAN02G0174' => 'fan', 'FAN02G3146' => 'fan', 'FAN04G1672' => 'fan', 'FAN04G2273' => 'fan', 'FAN05G2791' => 'fan', 'FAN05G4035' => 'fan', 'FAN07G0834' => 'fan', 'FAN08G1198' => 'fan', 'FAN09G4182' => 'fan', 'FAN12G0496' => 'fan', 'FAN13G1027' => 'fan', 'FAN13G2951' => 'fan', 'FAN14G0705' => 'fan', 'FAN14G0720' => 'fan', 'FAN17G0201' => 'fan', 'FAN17G2665' => 'fan', 'FAN18G1456' => 'fan', 'FAN18G1525' => 'fan', 'FAN18G3500' => 'fan', 'FAN28G2670' => 'fan', 'FvH4_1g12391' => 'fve', 'FvH4_4g23220' => 'fve', 'FvH4_5g08810' => 'fve', 'FvH4_5g28960' => 'fve', 'FvH4_6g42820' => 'fve', 'FvH4_6g51110' => 'fve', 'Glyma.02G051802' => 'gma', 'Glyma.04G185300' => 'gma', 'Glyma.05G202900' => 'gma', 'Glyma.08G010300' => 'gma', 'Glyma.16G131900' => 'gma', 'Glyma.17G087900' => 'gma', 'Gohir.A07G048600' => 'ghi', 'Gohir.A11G179000' => 'ghi', 'Gohir.A12G140900' => 'ghi', 'Gohir.A12G140950' => 'ghi', 'Gohir.A12G191700' => 'ghi', 'Gohir.A13G086300' => 'ghi', 'Gohir.D07G052900' => 'ghi', 'Gohir.D11G186600' => 'ghi', 'Gohir.D12G145575' => 'ghi', 'Gohir.D12G145650' => 'ghi', 'Gohir.D12G145725' => 'ghi', 'Gohir.D12G194050' => 'ghi', 'Gohir.D13G091800' => 'ghi', 'Gorai.001G055900' => 'gra', 'Gorai.007G198400' => 'gra', 'Gorai.008G157000' => 'gra', 'Gorai.008G157100' => 'gra', 'Gorai.008G208700' => 'gra', 'Gorai.010G138700' => 'gra', 'GSVIVG01000977001' => 'vvi', 'GSVIVG01007708001' => 'vvi', 'GSVIVG01008587001' => 'vvi', 'GSVIVG01018849001' => 'vvi', 'GSVIVG01032432001' => 'vvi', 'HanXRQChr02g0034131' => 'han', 'HanXRQChr02g0035981' => 'han', 'HanXRQChr02g0035991' => 'han', 'HanXRQChr05g0155611' => 'han', 'HanXRQChr05g0155621' => 'han', 'HanXRQChr08g0236501' => 'han', 'HanXRQChr09g0261321' => 'han', 'HanXRQChr09g0272081' => 'han', 'HanXRQChr10g0310741' => 'han', 'HanXRQChr11g0325591' => 'han', 'HanXRQChr12g0385691' => 'han', 'HanXRQChr13g0387801' => 'han', 'HanXRQChr15g0463011' => 'han', 'Haze_03826' => 'cav', 'Haze_03827' => 'cav', 'Haze_07183' => 'cav', 'Haze_07537' => 'cav', 'Haze_07539' => 'cav', 'Haze_12461' => 'cav', 'Haze_16115' => 'cav', 'Haze_16808' => 'cav', 'Haze_18531' => 'cav', 'Hma1.2p1_0046F.1_g026700' => 'hma', 'Hma1.2p1_0046F.1_g026710' => 'hma', 'Hma1.2p1_0168F.1_g074340' => 'hma', 'Hma1.2p1_0266F.1_g107030' => 'hma', 'Hma1.2p1_0266F.1_g107060' => 'hma', 'Hma1.2p1_0275F.1_g110510' => 'hma', 'Hma1.2p1_0592F.1_g185490' => 'hma', 'Hma1.2p1_0592F.1_g185500' => 'hma', 'Hma1.2p1_0592F.1_g185510' => 'hma', 'Hma1.2p1_0592F.1_g185520' => 'hma', 'Hma1.2p1_0592F.1_g185530' => 'hma', 'Hma1.2p1_0818F.1_g223450' => 'hma', 'HPP92_009708' => 'vpl', 'HPP92_009793' => 'vpl', 'HPP92_009796' => 'vpl', 'HPP92_009797' => 'vpl', 'HPP92_014940' => 'vpl', 'HPP92_014988' => 'vpl', 'Hund02463' => 'sun', 'Hund02760' => 'sun', 'Hund05071' => 'sun', 'Hund10108' => 'sun', 'Hund11204' => 'sun', 'Hund14016' => 'sun', 'Hund16464' => 'sun', 'Lalb_Chr09g0333391' => 'lal', 'Lalb_Chr11g0070461' => 'lal', 'Lalb_Chr12g0201671' => 'lal', 'Lalb_Chr13g0297161' => 'lal', 'Lj1g0002823' => 'lja', 'Lj3C1074T6' => 'lonja', 'Lj4A212T28' => 'lonja', 'Lj4g0005516' => 'lja', 'Lj4g0013705' => 'lja', 'Lj4g0027865' => 'lja', 'Lj5C92G16' => 'lonja', 'Lj5C92T12' => 'lonja', 'Lj7C596T3' => 'lonja', 'Lj9A446G59' => 'lonja', 'Lj9A482G21' => 'lonja', 'Lsat_1_v5_gn_1_28261' => 'lsa', 'Lsat_1_v5_gn_1_28281' => 'lsa', 'Lsat_1_v5_gn_1_32721' => 'lsa', 'Lsat_1_v5_gn_4_151760' => 'lsa', 'Lsat_1_v5_gn_4_2120' => 'lsa', 'Lsat_1_v5_gn_4_75761' => 'lsa', 'Lsat_1_v5_gn_5_10920' => 'lsa', 'Manes.02G099900' => 'mes', 'Manes.11G096200' => 'mes', 'Manes.12G007200' => 'mes', 'Manes.14G048300' => 'mes', 'Manes.17G114700' => 'mes', 'Mapoly0002s0070' => 'mpo', 'Mapoly0029s0099' => 'mpo', 'MBI07_g24742_MAGBIO' => 'mbi', 'MBI10_g27988_MAGBIO' => 'mbi', 'MBI11_g13057_MAGBIO' => 'mbi', 'MD02G1137200' => 'mdo', 'MD06G1137200' => 'mdo', 'MD07G1122300' => 'mdo', 'MD09G1078200' => 'mdo', 'MD13G1123700' => 'mdo', 'MD14G1151900' => 'mdo', 'MD17G1030900' => 'mdo', 'MD17G1068200' => 'mdo', 'MD17G1068600' => 'mdo', 'Medtr3g077540' => 'mtr', 'Medtr4g105530' => 'mtr', 'Medtr8g076580' => 'mtr', 'Medtr8g076590' => 'mtr', 'Medtr8g096410' => 'mtr', 'MELO3C016411.2' => 'cme', 'MELO3C017780.2' => 'cme', 'MELO3C022560.2' => 'cme', 'MELO3C026187.2' => 'cme', 'MELO3C026286.2' => 'cme', 'MELO3C032854.2' => 'cme', 'Migut.H02495' => 'egut', 'Migut.I00561' => 'egut', 'Migut.K01015' => 'egut', 'Migut.K01016' => 'egut', 'Migut.L00743' => 'egut', 'Migut.L00744' => 'egut', 'Migut.L00746' => 'egut', 'Migut.L00798' => 'egut', 'Migut.L00799' => 'egut', 'Migut.N02096' => 'egut', 'MSTRG.11259' => 'ama', 'MSTRG.23142' => 'ama', 'MSTRG.2499' => 'ama', 'Nitab4.5_0000003g0730' => 'nta', 'Nitab4.5_0000137g0020' => 'nta', 'Nitab4.5_0000721g0210' => 'nta', 'Nitab4.5_0000723g0050' => 'nta', 'Nitab4.5_0000913g0070' => 'nta', 'Nitab4.5_0001332g0040' => 'nta', 'Nitab4.5_0001771g0050' => 'nta', 'Nitab4.5_0001918g0050' => 'nta', 'Nitab4.5_0002686g0030' => 'nta', 'Nitab4.5_0003156g0020' => 'nta', 'Nitab4.5_0003383g0040' => 'nta', 'Nitab4.5_0003918g0010' => 'nta', 'Nitab4.5_0006760g0010' => 'nta', 'Nn1g05981' => 'nnu', 'Nn1g06288' => 'nnu', 'Nn3g16371' => 'nnu', 'Nn3g16786' => 'nnu', 'Nn4g22232' => 'nnu', 'Oeu005144.1' => 'oeu', 'Oeu005145.1' => 'oeu', 'Oeu011348.1' => 'oeu', 'Oeu016415.1' => 'oeu', 'Oeu023501.1' => 'oeu', 'Oeu044473.1' => 'oeu', 'Oeu048892.2' => 'oeu', 'Os01g0549200' => 'osa', 'Os02g0469300' => 'osa', 'Os04g0311100' => 'osa', 'Os06g0474900' => 'osa', 'Os10g0181700' => 'osa', 'Os11g0454800' => 'osa', 'Peaxi162Scf00037g00714' => 'pax', 'Peaxi162Scf00084g01217' => 'pax', 'Peaxi162Scf00257g00217' => 'pax', 'Peaxi162Scf00516g00215' => 'pax', 'Peaxi162Scf00689g00123' => 'pax', 'PGR044G2719' => 'pgr', 'PGR083G1360' => 'pgr', 'PGR102G2849' => 'pgr', 'PGR119G2534' => 'pgr', 'PGSC0003DMG400003538' => 'stu', 'PGSC0003DMG400028138' => 'stu', 'PGSC0003DMG400031732' => 'stu', 'PGSC0003DMG400038165' => 'stu', 'Phvul.002G284600' => 'pvu', 'Phvul.003G258200' => 'pvu', 'Phvul.009G176500' => 'pvu', 'Potri.003G167201' => 'ptr', 'Potri.005G118400' => 'ptr', 'Potri.012G089000' => 'ptr', 'Potri.012G102800' => 'ptr', 'Potri.015G079400' => 'ptr', 'Potri.015G100900' => 'ptr', 'Pp3c14_9810' => 'ppa', 'Pp3c15_10450' => 'ppa', 'Pp3c20_19150' => 'ppa', 'Pp3c23_12740' => 'ppa', 'Pp3c23_6310' => 'ppa', 'Pp3c24_3720' => 'ppa', 'Pp3c27_2580' => 'ppa', 'Pp3c9_8990' => 'ppa', 'PRCOL_00002854' => 'pco', 'Prupe.1G221200' => 'ppe', 'Prupe.3G289000' => 'ppe', 'Prupe.5G147000' => 'ppe', 'Prupe.6G157300' => 'ppe', 'Prupe.7G163400' => 'ppe', 'Psat0s2177g0040' => 'psa', 'Psat3g174760' => 'psa', 'Psat3g192160' => 'psa', 'Psat4g058520' => 'psa', 'Psat4g096840' => 'psa', 'Psat7g037320' => 'psa', 'PSO017G1274' => 'pso', 'PSO017G5166' => 'pso', 'PSO063G4558' => 'pso', 'PSO170G4458' => 'pso', 'PSO170G5005' => 'pso', 'PSO210G6156' => 'pso', 'PSO210G6635' => 'pso', 'PSO210G7397' => 'pso', 'PSO210G7700' => 'pso', 'PSO455G0035' => 'pso', 'PSO455G0180' => 'pso', 'PSO478G4515' => 'pso', 'PSO832G1305' => 'pso', 'PSO832G3489' => 'pso', 'QL02p075247' => 'qlo', 'QL03p051148' => 'qlo', 'QL05p010313' => 'qlo', 'QL06p034627' => 'qlo', 'QL10p001889' => 'qlo', 'QL10p010846' => 'qlo', 'RcHm_v2.0_Chr1g0350621' => 'rch', 'RcHm_v2.0_Chr1g0350641' => 'rch', 'RcHm_v2.0_Chr2g0092891' => 'rch', 'RcHm_v2.0_Chr2g0100251' => 'rch', 'RcHm_v2.0_Chr2g0158661' => 'rch', 'RcHm_v2.0_Chr2g0172741' => 'rch', 'RcHm_v2.0_Chr4g0429571' => 'rch', 'RcHm_v2.0_Chr5g0042471' => 'rch', 'RcHm_v2.0_Chr7g0189451' => 'rch', 'Rhsim08G0052000' => 'rsi', 'Rhsim08G0174400' => 'rsi', 'Rhsim08G0193200' => 'rsi', 'Rhsim10G0214800' => 'rsi', 'Rhsim10G0214900' => 'rsi', 'Rhsim10G0215000' => 'rsi', 'Rhsim12G0022900' => 'rsi', 'Rhsim12G0177500' => 'rsi', 'Rhsim12G0177700' => 'rsi', 'Sabra03G0122600' => 'sbr', 'Sabra05G0097400' => 'sbr', 'Sabra12G0064100' => 'sbr', 'Sabra15G0121300' => 'sbr', 'SalBow2G0642' => 'sbo', 'SalBow5G2667' => 'sbo', 'SalBow5G4873' => 'sbo', 'SalBow8G2395' => 'sbo', 'Sc03g0003290' => 'sci', 'Sc10g0010130' => 'sci', 'Sc22g0003650' => 'sci', 'Sed0001603' => 'sed', 'Sed0004259' => 'sed', 'Sed0006789' => 'sed', 'Sed0011838' => 'sed', 'Sed0012964' => 'sed', 'Sed0016383' => 'sed', 'Sed0019010' => 'sed', 'Sed0020188' => 'sed', 'SEGI_04702' => 'sgi', 'SEGI_17231' => 'sgi', 'SEGI_18877' => 'sgi', 'SEGI_25196' => 'sgi', 'SEGI_25515' => 'sgi', 'SEGI_28445' => 'sgi', 'SEGI_37452' => 'sgi', 'SGA_v2.0_scaffold188G40336' => 'sas', 'SGA_v2.0_scaffold228G43247' => 'sas', 'SGA_v2.0_scaffold280G46853' => 'sas', 'SGA_v2.0_scaffold34G13808' => 'sas', 'SGA_v2.0_scaffold40G15576' => 'sas', 'SGA_v2.0_scaffold611G53188' => 'sas', 'SGA_v2.0_scaffold78G25461' => 'sas', 'SGA_v2.0_scaffold90G27888' => 'sas', 'SHI08601' => 'shi', 'SHI08606' => 'shi', 'SHI17117' => 'shi', 'SHI17119' => 'shi', 'SMO118G0201' => 'smo', 'SMO169G0247' => 'smo', 'SMO176G0006' => 'smo', 'SMO176G0015' => 'smo', 'SMO202G0006' => 'smo', 'SMO240G0050' => 'smo', 'SMO286G0009' => 'smo', 'SMO338G0033' => 'smo', 'SMO356G0533' => 'smo', 'SMO364G0382' => 'smo', 'SMO367G0166' => 'smo', 'SMO367G1098' => 'smo', 'Solyc01g009920.3' => 'sly', 'Solyc01g099300.3' => 'sly', 'Solyc02g084700.3' => 'sly', 'Solyc03g097520.3' => 'sly', 'Solyc06g071580.3' => 'sly', 'Solyc10g081760.3' => 'sly', 'Sopen01g005480' => 'spe', 'Sopen01g042850' => 'spe', 'Sopen02g029370' => 'spe', 'Sopen03g028280' => 'spe', 'Sopen06g027870' => 'spe', 'Sopen10g032270' => 'spe', 'Sp5g18180' => 'spa', 'Sp6g12880' => 'spa', 'Sp6g30850' => 'spa', 'Sp7g22960' => 'spa', 'Sp7g34010' => 'spa', 'SpUn1326_0010' => 'spa', 'TAR371G0242' => 'tar', 'TAR622G0638' => 'tar', 'TAR628G1548' => 'tar', 'TAR629G1079' => 'tar', 'TAR629G3413' => 'tar', 'THA.LOC104804249' => 'tha', 'THA.LOC104808315' => 'tha', 'THA.LOC104809238' => 'tha', 'THA.LOC104825484' => 'tha', 'Thecc.01G025500' => 'tca', 'Thecc.03G015800' => 'tca', 'Thecc.03G018000' => 'tca', 'Thecc.03G134800' => 'tca', 'Thecc.04G014700' => 'tca', 'Thhalv10006991m.g' => 'esa', 'Thhalv10012707m.g' => 'esa', 'Thhalv10015739m.g' => 'esa', 'Thhalv10024553m.g' => 'esa', 'Thhalv10024673m.g' => 'esa', 'Thhalv10029187m.g' => 'esa', 'TPR.G12971' => 'tpr', 'TPR.G29396' => 'tpr', 'TPR.G33376' => 'tpr', 'TPR.G35508' => 'tpr', 'TPR.G35516' => 'tpr', 'TPR.G37317' => 'tpr', 'TPR.G37389' => 'tpr', 'TPR.G37523' => 'tpr', 'TPR.G559' => 'tpr', 'TWI14G0070' => 'twi', 'TWI14G0729' => 'twi', 'TWI18G0596' => 'twi', 'TWI39G0780' => 'twi', 'TWI39G0850' => 'twi', 'TWI73G1052' => 'twi', 'unitig_52.g17485' => 'ugi', 'unitig_61.g26355' => 'ugi', 'vmacro01040' => 'vma', 'vmacro16731' => 'vma', 'vmacro18270' => 'vma', 'vmacro19142' => 'vma', 'vmacro19407' => 'vma', 'vmacro19408' => 'vma', 'vmacro21899' => 'vma', 'vmacro21900' => 'vma', 'vmacro21901' => 'vma', 'VMungo0251G0490' => 'vmu', 'VMungo0251G1748' => 'vmu', 'VMungo1309G0421' => 'vmu', 'Zm00001eb086500' => 'zma', 'Zm00001eb150680' => 'zma', 'Zm00001eb162330' => 'zma', 'Zm00001eb203130' => 'zma', 'Zm00001eb369480' => 'zma', 'Zm00001eb382340' => 'zma', 'Zm00001eb416360' => 'zma' ), 'gf_id' => 'HOM05D000902', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000902' ), 'data_identifier' => 'HOM05D000902', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000902', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '663', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02470' => 'bna', 'A01p16260' => 'bna', 'A02p01680' => 'bna', 'A03p16600' => 'bna', 'A03p55660' => 'bna', 'A03p64160' => 'bna', 'A03p64170' => 'bna', 'A08p31900' => 'bna', 'A09p59530' => 'bna', 'A10p08230' => 'bna', 'A10p25090' => 'bna', 'Aa31LG3G7100' => 'aar', 'Aa31LG3G7110' => 'aar', 'Aa31LG6G13160' => 'aar', 'Aa31LG7G10770' => 'aar', 'Aa31LG7G3830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2723' => 'aag', 'Actinidia08045' => 'ach', 'Actinidia08888' => 'ach', 'Actinidia18333' => 'ach', 'Actinidia19334' => 'ach', 'Actinidia25552' => 'ach', 'Actinidia26089' => 'ach', 'Actinidia30615' => 'ach', 'Actinidia30616' => 'ach', 'Actinidia33083' => 'ach', 'Actinidia35762' => 'ach', 'Ah.02g110620' => 'amhyb', 'Ah.11g046390' => 'amhyb', 'AL1G31670' => 'aly', 'AL6G23730' => 'aly', 'AL7G14740' => 'aly', 'AL7G14750' => 'aly', 'AL7G14760' => 'aly', 'AL7G28220' => 'aly', 'AL8G24940' => 'aly', 'Aqoxy3G01665' => 'aox', 'Aqoxy3G02853' => 'aox', 'Aqoxy5G01513' => 'aox', 'Aqoxy5G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8SKA4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ75LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKDA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0LJZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7REX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZP4YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWX7I5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2QKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS0L9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPCD8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q161UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC7XCF' => 'arhy', 'AT1G19100' => 'ath', 'AT4G24970' => 'ath', 'AT4G36270' => 'ath', 'AT4G36280' => 'ath', 'AT4G36290' => 'ath', 'AT5G13130' => 'ath', 'AT5G50780' => 'ath', 'ATR0582G266' => 'atr', 'ATR0661G195' => 'atr', 'ATR1152G031' => 'atr', 'Atru.chr11.2382' => 'acertr', 'Atru.chr12.2337' => 'acertr', 'Atru.chr3.744' => 'acertr', 'Atru.chr6.1870' => 'acertr', 'Atru.chr9.2515' => 'acertr', 'AUR62004120' => 'cqu', 'AUR62005667' => 'cqu', 'AUR62007634' => 'cqu', 'AUR62008186' => 'cqu', 'AUR62008187' => 'cqu', 'AUR62008188' => 'cqu', 'AUR62027954' => 'cqu', 'AUR62028766' => 'cqu', 'AUR62028767' => 'cqu', 'AUR62028768' => 'cqu', 'AUR62028886' => 'cqu', 'AUR62029563' => 'cqu', 'AUR62038832' => 'cqu', 'BcaB01g04149' => 'bca', 'BcaB03g12940' => 'bca', 'BcaB03g13090' => 'bca', 'BcaB03g14466' => 'bca', 'BcaB05g24035' => 'bca', 'BcaC01g06050' => 'bca', 'BcaC04g19148' => 'bca', 'BcaC04g20761' => 'bca', 'BcaC06g32845' => 'bca', 'BcaC07g41274' => 'bca', 'BcaC09g50827' => 'bca', 'BcaNung00741' => 'bca', 'BcaNung00742' => 'bca', 'BcaNung01859' => 'bca', 'BcaNung03985' => 'bca', 'BcaNung03989' => 'bca', 'BcaNung05661' => 'bca', 'BolC1t00257H' => 'bol', 'BolC1t01956H' => 'bol', 'BolC2t06534H' => 'bol', 'BolC3t14334H' => 'bol', 'BolC5t30451H' => 'bol', 'BolC7t45880H' => 'bol', 'BolC7t46586H' => 'bol', 'BolC8t49301H' => 'bol', 'BolC8t51837H' => 'bol', 'BolC9t56822H' => 'bol', 'BolC9t59235H' => 'bol', 'BraA01t00234Z' => 'bra', 'BraA01t01563Z' => 'bra', 'BraA02t05147Z' => 'bra', 'BraA03t10947Z' => 'bra', 'BraA03t14633Z' => 'bra', 'BraA08t35112Z' => 'bra', 'BraA09t41330Z' => 'bra', 'BraA10t44570Z' => 'bra', 'C01p02670' => 'bna', 'C01p20260' => 'bna', 'C02p05890' => 'bna', 'C03p19530' => 'bna', 'C05p17470' => 'bna', 'C07p53900' => 'bna', 'C07p61630' => 'bna', 'C08p16800' => 'bna', 'C08p42810' => 'bna', 'C09p39480' => 'bna', 'C09p63980' => 'bna', 'CAN.G1001.7' => 'can', 'CAN.G1034.55' => 'can', 'CAN.G143.7' => 'can', 'CAN.G3340.1' => 'can', 'CAN.G358.19' => 'can', 'CAN.G373.2' => 'can', 'CAN.G674.16' => 'can', 'CAN.G674.17' => 'can', 'CAN.G674.18' => 'can', 'CAN.G732.2' => 'can', 'CAN.G732.3' => 'can', 'CAN.G993.39' => 'can', 'CANSAT01G2052' => 'cansat', 'CANSAT80G0070' => 'cansat', 'CANSAT80G0483' => 'cansat', 'CANSAT80G0625' => 'cansat', 'CARHR019690' => 'chi', 'CARHR080280' => 'chi', 'CARHR152750' => 'chi', 'CARHR152760' => 'chi', 'CARHR152770' => 'chi', 'CARHR200340' => 'chi', 'CARHR232370' => 'chi', 'CARHR244670' => 'chi', 'CARHR244680' => 'chi', 'CARHR257520' => 'chi', 'Carub.0001s1872' => 'cru', 'Carub.0006s1130' => 'cru', 'Carub.0007s0396' => 'cru', 'Carub.0007s0397' => 'cru', 'Carub.0007s1608' => 'cru', 'Carub.0008s1068' => 'cru', 'Carub.0008s1077' => 'cru', 'Ca_16158_v3' => 'car', 'Ca_17571_v3' => 'car', 'Ca_21936_v3' => 'car', 'Ca_22350_v3' => 'car', 'CBR_g22445' => 'cbr', 'CBR_g26290' => 'cbr', 'Cc04_g09610' => 'ccan', 'Cc04_g12280' => 'ccan', 'Cc07_g10230' => 'ccan', 'CDE02G0093' => 'cde', 'CDE02G0701' => 'cde', 'CDE04G1050' => 'cde', 'CDE05G1833' => 'cde', 'CDE05G3058' => 'cde', 'CDE05G3380' => 'cde', 'CDE06G0536' => 'cde', 'Cfa006923' => 'cfa', 'Cfa009402' => 'cfa', 'Cfa018751' => 'cfa', 'Cfa019164' => 'cfa', 'Cfa022935' => 'cfa', 'Ciclev10019081m.g' => 'ccl', 'Ciclev10025076m.g' => 'ccl', 'Ciclev10030712m.g' => 'ccl', 'Ciclev10033760m.g' => 'ccl', 'CiPaw.05G105600' => 'cil', 'CiPaw.08G136700' => 'cil', 'CiPaw.11G003900' => 'cil', 'CiPaw.11G023700' => 'cil', 'CiPaw.12G003700' => 'cil', 'ClCG06G017100' => 'cla', 'ClCG06G018110' => 'cla', 'ClCG07G008800' => 'cla', 'ClCG07G015330' => 'cla', 'COL.COLO4_13698' => 'col', 'COL.COLO4_16659' => 'col', 'COL.COLO4_21986' => 'col', 'COL.COLO4_24049' => 'col', 'COL.COLO4_29061' => 'col', 'COL.COLO4_29075' => 'col', 'COL.COLO4_30094' => 'col', 'Cpa.g.c33689' => 'cpa', 'Cpa.g.sc108.39' => 'cpa', 'Cpa.g.sc108.41' => 'cpa', 'Cpa.g.sc1163.1' => 'cpa', 'Cpa.g.sc4.155' => 'cpa', 'Cpa.g.sc6.194' => 'cpa', 'CsaV3_1G000340' => 'csa', 'CsaV3_1G001400' => 'csa', 'CsaV3_4G002220' => 'csa', 'CsaV3_4G005370' => 'csa', 'CSS0007487' => 'camsi', 'CSS0008066' => 'camsi', 'CSS0009120' => 'camsi', 'CSS0015512' => 'camsi', 'CSS0022409' => 'camsi', 'CSS0025358' => 'camsi', 'CSS0044547' => 'camsi', 'DCAR_013057' => 'dca', 'DCAR_015058' => 'dca', 'DCAR_016027' => 'dca', 'DCAR_017327' => 'dca', 'DCAR_020743' => 'dca', 'DCAR_026157' => 'dca', 'DCAR_032339' => 'dca', 'DCAR_032340' => 'dca', 'Dinv11200' => 'din', 'Dinv11201' => 'din', 'Dinv20631' => 'din', 'Dinv23182' => 'din', 'Dinv33466' => 'din', 'Dinv33583' => 'din', 'Dinv38565' => 'din', 'Duzib068G0200' => 'dzi', 'Duzib147G0132' => 'dzi', 'Duzib147G0635' => 'dzi', 'Duzib205G1670' => 'dzi', 'Duzib251G0606' => 'dzi', 'ECA232G3336' => 'eca', 'ECA232G3763' => 'eca', 'ECA232G4845' => 'eca', 'ECA234G1607' => 'eca', 'ECA246G0932' => 'eca', 'ECA247G0781' => 'eca', 'ECA247G1932' => 'eca', 'ECA247G2079' => 'eca', 'ECA247G3338' => 'eca', 'ECA247G4115' => 'eca', 'EL10Ac3g06552' => 'bvu', 'EL10Ac5g10721' => 'bvu', 'EL10Ac5g10722' => 'bvu', 'EL10Ac5g10723' => 'bvu', 'EL10Ac5g11361' => 'bvu', 'EL10Ac6g13553' => 'bvu', 'EL10As8g23872' => 'bvu', 'Eucgr.B00250' => 'egr', 'Eucgr.B00251' => 'egr', 'Eucgr.B03533' => 'egr', 'Eucgr.I02381' => 'egr', 'Eucgr.K02700' => 'egr', 'FAN02G0174' => 'fan', 'FAN02G3146' => 'fan', 'FAN04G1672' => 'fan', 'FAN04G2273' => 'fan', 'FAN05G2791' => 'fan', 'FAN05G4035' => 'fan', 'FAN07G0834' => 'fan', 'FAN08G1198' => 'fan', 'FAN09G4182' => 'fan', 'FAN12G0496' => 'fan', 'FAN13G1027' => 'fan', 'FAN13G2951' => 'fan', 'FAN14G0705' => 'fan', 'FAN14G0720' => 'fan', 'FAN17G0201' => 'fan', 'FAN17G2665' => 'fan', 'FAN18G1456' => 'fan', 'FAN18G1525' => 'fan', 'FAN18G3500' => 'fan', 'FAN28G2670' => 'fan', 'FvH4_1g12391' => 'fve', 'FvH4_4g23220' => 'fve', 'FvH4_5g08810' => 'fve', 'FvH4_5g28960' => 'fve', 'FvH4_6g42820' => 'fve', 'FvH4_6g51110' => 'fve', 'Glyma.02G051802' => 'gma', 'Glyma.04G185300' => 'gma', 'Glyma.05G202900' => 'gma', 'Glyma.08G010300' => 'gma', 'Glyma.16G131900' => 'gma', 'Glyma.17G087900' => 'gma', 'Gohir.A07G048600' => 'ghi', 'Gohir.A11G179000' => 'ghi', 'Gohir.A12G140900' => 'ghi', 'Gohir.A12G140950' => 'ghi', 'Gohir.A12G191700' => 'ghi', 'Gohir.A13G086300' => 'ghi', 'Gohir.D07G052900' => 'ghi', 'Gohir.D11G186600' => 'ghi', 'Gohir.D12G145575' => 'ghi', 'Gohir.D12G145650' => 'ghi', 'Gohir.D12G145725' => 'ghi', 'Gohir.D12G194050' => 'ghi', 'Gohir.D13G091800' => 'ghi', 'Gorai.001G055900' => 'gra', 'Gorai.007G198400' => 'gra', 'Gorai.008G157000' => 'gra', 'Gorai.008G157100' => 'gra', 'Gorai.008G208700' => 'gra', 'Gorai.010G138700' => 'gra', 'GSVIVG01000977001' => 'vvi', 'GSVIVG01007708001' => 'vvi', 'GSVIVG01008587001' => 'vvi', 'GSVIVG01018849001' => 'vvi', 'GSVIVG01032432001' => 'vvi', 'HanXRQChr02g0034131' => 'han', 'HanXRQChr02g0035981' => 'han', 'HanXRQChr02g0035991' => 'han', 'HanXRQChr05g0155611' => 'han', 'HanXRQChr05g0155621' => 'han', 'HanXRQChr08g0236501' => 'han', 'HanXRQChr09g0261321' => 'han', 'HanXRQChr09g0272081' => 'han', 'HanXRQChr10g0310741' => 'han', 'HanXRQChr11g0325591' => 'han', 'HanXRQChr12g0385691' => 'han', 'HanXRQChr13g0387801' => 'han', 'HanXRQChr15g0463011' => 'han', 'Haze_03826' => 'cav', 'Haze_03827' => 'cav', 'Haze_07183' => 'cav', 'Haze_07537' => 'cav', 'Haze_07539' => 'cav', 'Haze_12461' => 'cav', 'Haze_16115' => 'cav', 'Haze_16808' => 'cav', 'Haze_18531' => 'cav', 'Hma1.2p1_0046F.1_g026700' => 'hma', 'Hma1.2p1_0046F.1_g026710' => 'hma', 'Hma1.2p1_0168F.1_g074340' => 'hma', 'Hma1.2p1_0266F.1_g107030' => 'hma', 'Hma1.2p1_0266F.1_g107060' => 'hma', 'Hma1.2p1_0275F.1_g110510' => 'hma', 'Hma1.2p1_0592F.1_g185490' => 'hma', 'Hma1.2p1_0592F.1_g185500' => 'hma', 'Hma1.2p1_0592F.1_g185510' => 'hma', 'Hma1.2p1_0592F.1_g185520' => 'hma', 'Hma1.2p1_0592F.1_g185530' => 'hma', 'Hma1.2p1_0818F.1_g223450' => 'hma', 'HPP92_009708' => 'vpl', 'HPP92_009793' => 'vpl', 'HPP92_009796' => 'vpl', 'HPP92_009797' => 'vpl', 'HPP92_014940' => 'vpl', 'HPP92_014988' => 'vpl', 'Hund02463' => 'sun', 'Hund02760' => 'sun', 'Hund05071' => 'sun', 'Hund10108' => 'sun', 'Hund11204' => 'sun', 'Hund14016' => 'sun', 'Hund16464' => 'sun', 'Lalb_Chr09g0333391' => 'lal', 'Lalb_Chr11g0070461' => 'lal', 'Lalb_Chr12g0201671' => 'lal', 'Lalb_Chr13g0297161' => 'lal', 'Lj1g0002823' => 'lja', 'Lj3C1074T6' => 'lonja', 'Lj4A212T28' => 'lonja', 'Lj4g0005516' => 'lja', 'Lj4g0013705' => 'lja', 'Lj4g0027865' => 'lja', 'Lj5C92G16' => 'lonja', 'Lj5C92T12' => 'lonja', 'Lj7C596T3' => 'lonja', 'Lj9A446G59' => 'lonja', 'Lj9A482G21' => 'lonja', 'Lsat_1_v5_gn_1_28261' => 'lsa', 'Lsat_1_v5_gn_1_28281' => 'lsa', 'Lsat_1_v5_gn_1_32721' => 'lsa', 'Lsat_1_v5_gn_4_151760' => 'lsa', 'Lsat_1_v5_gn_4_2120' => 'lsa', 'Lsat_1_v5_gn_4_75761' => 'lsa', 'Lsat_1_v5_gn_5_10920' => 'lsa', 'Manes.02G099900' => 'mes', 'Manes.11G096200' => 'mes', 'Manes.12G007200' => 'mes', 'Manes.14G048300' => 'mes', 'Manes.17G114700' => 'mes', 'Mapoly0002s0070' => 'mpo', 'Mapoly0029s0099' => 'mpo', 'MBI07_g24742_MAGBIO' => 'mbi', 'MBI10_g27988_MAGBIO' => 'mbi', 'MBI11_g13057_MAGBIO' => 'mbi', 'MD02G1137200' => 'mdo', 'MD06G1137200' => 'mdo', 'MD07G1122300' => 'mdo', 'MD09G1078200' => 'mdo', 'MD13G1123700' => 'mdo', 'MD14G1151900' => 'mdo', 'MD17G1030900' => 'mdo', 'MD17G1068200' => 'mdo', 'MD17G1068600' => 'mdo', 'Medtr3g077540' => 'mtr', 'Medtr4g105530' => 'mtr', 'Medtr8g076580' => 'mtr', 'Medtr8g076590' => 'mtr', 'Medtr8g096410' => 'mtr', 'MELO3C016411.2' => 'cme', 'MELO3C017780.2' => 'cme', 'MELO3C022560.2' => 'cme', 'MELO3C026187.2' => 'cme', 'MELO3C026286.2' => 'cme', 'MELO3C032854.2' => 'cme', 'Migut.H02495' => 'egut', 'Migut.I00561' => 'egut', 'Migut.K01015' => 'egut', 'Migut.K01016' => 'egut', 'Migut.L00743' => 'egut', 'Migut.L00744' => 'egut', 'Migut.L00746' => 'egut', 'Migut.L00798' => 'egut', 'Migut.L00799' => 'egut', 'Migut.N02096' => 'egut', 'MSTRG.11259' => 'ama', 'MSTRG.23142' => 'ama', 'MSTRG.2499' => 'ama', 'Nitab4.5_0000003g0730' => 'nta', 'Nitab4.5_0000137g0020' => 'nta', 'Nitab4.5_0000721g0210' => 'nta', 'Nitab4.5_0000723g0050' => 'nta', 'Nitab4.5_0000913g0070' => 'nta', 'Nitab4.5_0001332g0040' => 'nta', 'Nitab4.5_0001771g0050' => 'nta', 'Nitab4.5_0001918g0050' => 'nta', 'Nitab4.5_0002686g0030' => 'nta', 'Nitab4.5_0003156g0020' => 'nta', 'Nitab4.5_0003383g0040' => 'nta', 'Nitab4.5_0003918g0010' => 'nta', 'Nitab4.5_0006760g0010' => 'nta', 'Nn1g05981' => 'nnu', 'Nn1g06288' => 'nnu', 'Nn3g16371' => 'nnu', 'Nn3g16786' => 'nnu', 'Nn4g22232' => 'nnu', 'Oeu005144.1' => 'oeu', 'Oeu005145.1' => 'oeu', 'Oeu011348.1' => 'oeu', 'Oeu016415.1' => 'oeu', 'Oeu023501.1' => 'oeu', 'Oeu044473.1' => 'oeu', 'Oeu048892.2' => 'oeu', 'Os01g0549200' => 'osa', 'Os02g0469300' => 'osa', 'Os04g0311100' => 'osa', 'Os06g0474900' => 'osa', 'Os10g0181700' => 'osa', 'Os11g0454800' => 'osa', 'Peaxi162Scf00037g00714' => 'pax', 'Peaxi162Scf00084g01217' => 'pax', 'Peaxi162Scf00257g00217' => 'pax', 'Peaxi162Scf00516g00215' => 'pax', 'Peaxi162Scf00689g00123' => 'pax', 'PGR044G2719' => 'pgr', 'PGR083G1360' => 'pgr', 'PGR102G2849' => 'pgr', 'PGR119G2534' => 'pgr', 'PGSC0003DMG400003538' => 'stu', 'PGSC0003DMG400028138' => 'stu', 'PGSC0003DMG400031732' => 'stu', 'PGSC0003DMG400038165' => 'stu', 'Phvul.002G284600' => 'pvu', 'Phvul.003G258200' => 'pvu', 'Phvul.009G176500' => 'pvu', 'Potri.003G167201' => 'ptr', 'Potri.005G118400' => 'ptr', 'Potri.012G089000' => 'ptr', 'Potri.012G102800' => 'ptr', 'Potri.015G079400' => 'ptr', 'Potri.015G100900' => 'ptr', 'Pp3c14_9810' => 'ppa', 'Pp3c15_10450' => 'ppa', 'Pp3c20_19150' => 'ppa', 'Pp3c23_12740' => 'ppa', 'Pp3c23_6310' => 'ppa', 'Pp3c24_3720' => 'ppa', 'Pp3c27_2580' => 'ppa', 'Pp3c9_8990' => 'ppa', 'PRCOL_00002854' => 'pco', 'Prupe.1G221200' => 'ppe', 'Prupe.3G289000' => 'ppe', 'Prupe.5G147000' => 'ppe', 'Prupe.6G157300' => 'ppe', 'Prupe.7G163400' => 'ppe', 'Psat0s2177g0040' => 'psa', 'Psat3g174760' => 'psa', 'Psat3g192160' => 'psa', 'Psat4g058520' => 'psa', 'Psat4g096840' => 'psa', 'Psat7g037320' => 'psa', 'PSO017G1274' => 'pso', 'PSO017G5166' => 'pso', 'PSO063G4558' => 'pso', 'PSO170G4458' => 'pso', 'PSO170G5005' => 'pso', 'PSO210G6156' => 'pso', 'PSO210G6635' => 'pso', 'PSO210G7397' => 'pso', 'PSO210G7700' => 'pso', 'PSO455G0035' => 'pso', 'PSO455G0180' => 'pso', 'PSO478G4515' => 'pso', 'PSO832G1305' => 'pso', 'PSO832G3489' => 'pso', 'QL02p075247' => 'qlo', 'QL03p051148' => 'qlo', 'QL05p010313' => 'qlo', 'QL06p034627' => 'qlo', 'QL10p001889' => 'qlo', 'QL10p010846' => 'qlo', 'RcHm_v2.0_Chr1g0350621' => 'rch', 'RcHm_v2.0_Chr1g0350641' => 'rch', 'RcHm_v2.0_Chr2g0092891' => 'rch', 'RcHm_v2.0_Chr2g0100251' => 'rch', 'RcHm_v2.0_Chr2g0158661' => 'rch', 'RcHm_v2.0_Chr2g0172741' => 'rch', 'RcHm_v2.0_Chr4g0429571' => 'rch', 'RcHm_v2.0_Chr5g0042471' => 'rch', 'RcHm_v2.0_Chr7g0189451' => 'rch', 'Rhsim08G0052000' => 'rsi', 'Rhsim08G0174400' => 'rsi', 'Rhsim08G0193200' => 'rsi', 'Rhsim10G0214800' => 'rsi', 'Rhsim10G0214900' => 'rsi', 'Rhsim10G0215000' => 'rsi', 'Rhsim12G0022900' => 'rsi', 'Rhsim12G0177500' => 'rsi', 'Rhsim12G0177700' => 'rsi', 'Sabra03G0122600' => 'sbr', 'Sabra05G0097400' => 'sbr', 'Sabra12G0064100' => 'sbr', 'Sabra15G0121300' => 'sbr', 'SalBow2G0642' => 'sbo', 'SalBow5G2667' => 'sbo', 'SalBow5G4873' => 'sbo', 'SalBow8G2395' => 'sbo', 'Sc03g0003290' => 'sci', 'Sc10g0010130' => 'sci', 'Sc22g0003650' => 'sci', 'Sed0001603' => 'sed', 'Sed0004259' => 'sed', 'Sed0006789' => 'sed', 'Sed0011838' => 'sed', 'Sed0012964' => 'sed', 'Sed0016383' => 'sed', 'Sed0019010' => 'sed', 'Sed0020188' => 'sed', 'SEGI_04702' => 'sgi', 'SEGI_17231' => 'sgi', 'SEGI_18877' => 'sgi', 'SEGI_25196' => 'sgi', 'SEGI_25515' => 'sgi', 'SEGI_28445' => 'sgi', 'SEGI_37452' => 'sgi', 'SGA_v2.0_scaffold188G40336' => 'sas', 'SGA_v2.0_scaffold228G43247' => 'sas', 'SGA_v2.0_scaffold280G46853' => 'sas', 'SGA_v2.0_scaffold34G13808' => 'sas', 'SGA_v2.0_scaffold40G15576' => 'sas', 'SGA_v2.0_scaffold611G53188' => 'sas', 'SGA_v2.0_scaffold78G25461' => 'sas', 'SGA_v2.0_scaffold90G27888' => 'sas', 'SHI08601' => 'shi', 'SHI08606' => 'shi', 'SHI17117' => 'shi', 'SHI17119' => 'shi', 'SMO118G0201' => 'smo', 'SMO169G0247' => 'smo', 'SMO176G0006' => 'smo', 'SMO176G0015' => 'smo', 'SMO202G0006' => 'smo', 'SMO240G0050' => 'smo', 'SMO286G0009' => 'smo', 'SMO338G0033' => 'smo', 'SMO356G0533' => 'smo', 'SMO364G0382' => 'smo', 'SMO367G0166' => 'smo', 'SMO367G1098' => 'smo', 'Solyc01g009920.3' => 'sly', 'Solyc01g099300.3' => 'sly', 'Solyc02g084700.3' => 'sly', 'Solyc03g097520.3' => 'sly', 'Solyc06g071580.3' => 'sly', 'Solyc10g081760.3' => 'sly', 'Sopen01g005480' => 'spe', 'Sopen01g042850' => 'spe', 'Sopen02g029370' => 'spe', 'Sopen03g028280' => 'spe', 'Sopen06g027870' => 'spe', 'Sopen10g032270' => 'spe', 'Sp5g18180' => 'spa', 'Sp6g12880' => 'spa', 'Sp6g30850' => 'spa', 'Sp7g22960' => 'spa', 'Sp7g34010' => 'spa', 'SpUn1326_0010' => 'spa', 'TAR371G0242' => 'tar', 'TAR622G0638' => 'tar', 'TAR628G1548' => 'tar', 'TAR629G1079' => 'tar', 'TAR629G3413' => 'tar', 'THA.LOC104804249' => 'tha', 'THA.LOC104808315' => 'tha', 'THA.LOC104809238' => 'tha', 'THA.LOC104825484' => 'tha', 'Thecc.01G025500' => 'tca', 'Thecc.03G015800' => 'tca', 'Thecc.03G018000' => 'tca', 'Thecc.03G134800' => 'tca', 'Thecc.04G014700' => 'tca', 'Thhalv10006991m.g' => 'esa', 'Thhalv10012707m.g' => 'esa', 'Thhalv10015739m.g' => 'esa', 'Thhalv10024553m.g' => 'esa', 'Thhalv10024673m.g' => 'esa', 'Thhalv10029187m.g' => 'esa', 'TPR.G12971' => 'tpr', 'TPR.G29396' => 'tpr', 'TPR.G33376' => 'tpr', 'TPR.G35508' => 'tpr', 'TPR.G35516' => 'tpr', 'TPR.G37317' => 'tpr', 'TPR.G37389' => 'tpr', 'TPR.G37523' => 'tpr', 'TPR.G559' => 'tpr', 'TWI14G0070' => 'twi', 'TWI14G0729' => 'twi', 'TWI18G0596' => 'twi', 'TWI39G0780' => 'twi', 'TWI39G0850' => 'twi', 'TWI73G1052' => 'twi', 'unitig_52.g17485' => 'ugi', 'unitig_61.g26355' => 'ugi', 'vmacro01040' => 'vma', 'vmacro16731' => 'vma', 'vmacro18270' => 'vma', 'vmacro19142' => 'vma', 'vmacro19407' => 'vma', 'vmacro19408' => 'vma', 'vmacro21899' => 'vma', 'vmacro21900' => 'vma', 'vmacro21901' => 'vma', 'VMungo0251G0490' => 'vmu', 'VMungo0251G1748' => 'vmu', 'VMungo1309G0421' => 'vmu', 'Zm00001eb086500' => 'zma', 'Zm00001eb150680' => 'zma', 'Zm00001eb162330' => 'zma', 'Zm00001eb203130' => 'zma', 'Zm00001eb369480' => 'zma', 'Zm00001eb382340' => 'zma', 'Zm00001eb416360' => 'zma' ) $gf_id = 'HOM05D000902' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000902' ) $data_identifier = 'HOM05D000902' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 13, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 10, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 6, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 9, 'hma' => (int) 12, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 4, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 6, 'ppa' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 6, 'rch' => (int) 9, 'rsi' => (int) 9, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 12, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 3, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416360' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000902', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '663', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02470' => 'bna', 'A01p16260' => 'bna', 'A02p01680' => 'bna', 'A03p16600' => 'bna', 'A03p55660' => 'bna', 'A03p64160' => 'bna', 'A03p64170' => 'bna', 'A08p31900' => 'bna', 'A09p59530' => 'bna', 'A10p08230' => 'bna', 'A10p25090' => 'bna', 'Aa31LG3G7100' => 'aar', 'Aa31LG3G7110' => 'aar', 'Aa31LG6G13160' => 'aar', 'Aa31LG7G10770' => 'aar', 'Aa31LG7G3830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2723' => 'aag', 'Actinidia08045' => 'ach', 'Actinidia08888' => 'ach', 'Actinidia18333' => 'ach', 'Actinidia19334' => 'ach', 'Actinidia25552' => 'ach', 'Actinidia26089' => 'ach', 'Actinidia30615' => 'ach', 'Actinidia30616' => 'ach', 'Actinidia33083' => 'ach', 'Actinidia35762' => 'ach', 'Ah.02g110620' => 'amhyb', 'Ah.11g046390' => 'amhyb', 'AL1G31670' => 'aly', 'AL6G23730' => 'aly', 'AL7G14740' => 'aly', 'AL7G14750' => 'aly', 'AL7G14760' => 'aly', 'AL7G28220' => 'aly', 'AL8G24940' => 'aly', 'Aqoxy3G01665' => 'aox', 'Aqoxy3G02853' => 'aox', 'Aqoxy5G01513' => 'aox', 'Aqoxy5G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8SKA4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ75LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKDA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0LJZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7REX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZP4YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWX7I5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2QKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS0L9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPCD8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q161UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC7XCF' => 'arhy', 'AT1G19100' => 'ath', 'AT4G24970' => 'ath', 'AT4G36270' => 'ath', 'AT4G36280' => 'ath', 'AT4G36290' => 'ath', 'AT5G13130' => 'ath', 'AT5G50780' => 'ath', 'ATR0582G266' => 'atr', 'ATR0661G195' => 'atr', 'ATR1152G031' => 'atr', 'Atru.chr11.2382' => 'acertr', 'Atru.chr12.2337' => 'acertr', 'Atru.chr3.744' => 'acertr', 'Atru.chr6.1870' => 'acertr', 'Atru.chr9.2515' => 'acertr', 'AUR62004120' => 'cqu', 'AUR62005667' => 'cqu', 'AUR62007634' => 'cqu', 'AUR62008186' => 'cqu', 'AUR62008187' => 'cqu', 'AUR62008188' => 'cqu', 'AUR62027954' => 'cqu', 'AUR62028766' => 'cqu', 'AUR62028767' => 'cqu', 'AUR62028768' => 'cqu', 'AUR62028886' => 'cqu', 'AUR62029563' => 'cqu', 'AUR62038832' => 'cqu', 'BcaB01g04149' => 'bca', 'BcaB03g12940' => 'bca', 'BcaB03g13090' => 'bca', 'BcaB03g14466' => 'bca', 'BcaB05g24035' => 'bca', 'BcaC01g06050' => 'bca', 'BcaC04g19148' => 'bca', 'BcaC04g20761' => 'bca', 'BcaC06g32845' => 'bca', 'BcaC07g41274' => 'bca', 'BcaC09g50827' => 'bca', 'BcaNung00741' => 'bca', 'BcaNung00742' => 'bca', 'BcaNung01859' => 'bca', 'BcaNung03985' => 'bca', 'BcaNung03989' => 'bca', 'BcaNung05661' => 'bca', 'BolC1t00257H' => 'bol', 'BolC1t01956H' => 'bol', 'BolC2t06534H' => 'bol', 'BolC3t14334H' => 'bol', 'BolC5t30451H' => 'bol', 'BolC7t45880H' => 'bol', 'BolC7t46586H' => 'bol', 'BolC8t49301H' => 'bol', 'BolC8t51837H' => 'bol', 'BolC9t56822H' => 'bol', 'BolC9t59235H' => 'bol', 'BraA01t00234Z' => 'bra', 'BraA01t01563Z' => 'bra', 'BraA02t05147Z' => 'bra', 'BraA03t10947Z' => 'bra', 'BraA03t14633Z' => 'bra', 'BraA08t35112Z' => 'bra', 'BraA09t41330Z' => 'bra', 'BraA10t44570Z' => 'bra', 'C01p02670' => 'bna', 'C01p20260' => 'bna', 'C02p05890' => 'bna', 'C03p19530' => 'bna', 'C05p17470' => 'bna', 'C07p53900' => 'bna', 'C07p61630' => 'bna', 'C08p16800' => 'bna', 'C08p42810' => 'bna', 'C09p39480' => 'bna', 'C09p63980' => 'bna', 'CAN.G1001.7' => 'can', 'CAN.G1034.55' => 'can', 'CAN.G143.7' => 'can', 'CAN.G3340.1' => 'can', 'CAN.G358.19' => 'can', 'CAN.G373.2' => 'can', 'CAN.G674.16' => 'can', 'CAN.G674.17' => 'can', 'CAN.G674.18' => 'can', 'CAN.G732.2' => 'can', 'CAN.G732.3' => 'can', 'CAN.G993.39' => 'can', 'CANSAT01G2052' => 'cansat', 'CANSAT80G0070' => 'cansat', 'CANSAT80G0483' => 'cansat', 'CANSAT80G0625' => 'cansat', 'CARHR019690' => 'chi', 'CARHR080280' => 'chi', 'CARHR152750' => 'chi', 'CARHR152760' => 'chi', 'CARHR152770' => 'chi', 'CARHR200340' => 'chi', 'CARHR232370' => 'chi', 'CARHR244670' => 'chi', 'CARHR244680' => 'chi', 'CARHR257520' => 'chi', 'Carub.0001s1872' => 'cru', 'Carub.0006s1130' => 'cru', 'Carub.0007s0396' => 'cru', 'Carub.0007s0397' => 'cru', 'Carub.0007s1608' => 'cru', 'Carub.0008s1068' => 'cru', 'Carub.0008s1077' => 'cru', 'Ca_16158_v3' => 'car', 'Ca_17571_v3' => 'car', 'Ca_21936_v3' => 'car', 'Ca_22350_v3' => 'car', 'CBR_g22445' => 'cbr', 'CBR_g26290' => 'cbr', 'Cc04_g09610' => 'ccan', 'Cc04_g12280' => 'ccan', 'Cc07_g10230' => 'ccan', 'CDE02G0093' => 'cde', 'CDE02G0701' => 'cde', 'CDE04G1050' => 'cde', 'CDE05G1833' => 'cde', 'CDE05G3058' => 'cde', 'CDE05G3380' => 'cde', 'CDE06G0536' => 'cde', 'Cfa006923' => 'cfa', 'Cfa009402' => 'cfa', 'Cfa018751' => 'cfa', 'Cfa019164' => 'cfa', 'Cfa022935' => 'cfa', 'Ciclev10019081m.g' => 'ccl', 'Ciclev10025076m.g' => 'ccl', 'Ciclev10030712m.g' => 'ccl', 'Ciclev10033760m.g' => 'ccl', 'CiPaw.05G105600' => 'cil', 'CiPaw.08G136700' => 'cil', 'CiPaw.11G003900' => 'cil', 'CiPaw.11G023700' => 'cil', 'CiPaw.12G003700' => 'cil', 'ClCG06G017100' => 'cla', 'ClCG06G018110' => 'cla', 'ClCG07G008800' => 'cla', 'ClCG07G015330' => 'cla', 'COL.COLO4_13698' => 'col', 'COL.COLO4_16659' => 'col', 'COL.COLO4_21986' => 'col', 'COL.COLO4_24049' => 'col', 'COL.COLO4_29061' => 'col', 'COL.COLO4_29075' => 'col', 'COL.COLO4_30094' => 'col', 'Cpa.g.c33689' => 'cpa', 'Cpa.g.sc108.39' => 'cpa', 'Cpa.g.sc108.41' => 'cpa', 'Cpa.g.sc1163.1' => 'cpa', 'Cpa.g.sc4.155' => 'cpa', 'Cpa.g.sc6.194' => 'cpa', 'CsaV3_1G000340' => 'csa', 'CsaV3_1G001400' => 'csa', 'CsaV3_4G002220' => 'csa', 'CsaV3_4G005370' => 'csa', 'CSS0007487' => 'camsi', 'CSS0008066' => 'camsi', 'CSS0009120' => 'camsi', 'CSS0015512' => 'camsi', 'CSS0022409' => 'camsi', 'CSS0025358' => 'camsi', 'CSS0044547' => 'camsi', 'DCAR_013057' => 'dca', 'DCAR_015058' => 'dca', 'DCAR_016027' => 'dca', 'DCAR_017327' => 'dca', 'DCAR_020743' => 'dca', 'DCAR_026157' => 'dca', 'DCAR_032339' => 'dca', 'DCAR_032340' => 'dca', 'Dinv11200' => 'din', 'Dinv11201' => 'din', 'Dinv20631' => 'din', 'Dinv23182' => 'din', 'Dinv33466' => 'din', 'Dinv33583' => 'din', 'Dinv38565' => 'din', 'Duzib068G0200' => 'dzi', 'Duzib147G0132' => 'dzi', 'Duzib147G0635' => 'dzi', 'Duzib205G1670' => 'dzi', 'Duzib251G0606' => 'dzi', 'ECA232G3336' => 'eca', 'ECA232G3763' => 'eca', 'ECA232G4845' => 'eca', 'ECA234G1607' => 'eca', 'ECA246G0932' => 'eca', 'ECA247G0781' => 'eca', 'ECA247G1932' => 'eca', 'ECA247G2079' => 'eca', 'ECA247G3338' => 'eca', 'ECA247G4115' => 'eca', 'EL10Ac3g06552' => 'bvu', 'EL10Ac5g10721' => 'bvu', 'EL10Ac5g10722' => 'bvu', 'EL10Ac5g10723' => 'bvu', 'EL10Ac5g11361' => 'bvu', 'EL10Ac6g13553' => 'bvu', 'EL10As8g23872' => 'bvu', 'Eucgr.B00250' => 'egr', 'Eucgr.B00251' => 'egr', 'Eucgr.B03533' => 'egr', 'Eucgr.I02381' => 'egr', 'Eucgr.K02700' => 'egr', 'FAN02G0174' => 'fan', 'FAN02G3146' => 'fan', 'FAN04G1672' => 'fan', 'FAN04G2273' => 'fan', 'FAN05G2791' => 'fan', 'FAN05G4035' => 'fan', 'FAN07G0834' => 'fan', 'FAN08G1198' => 'fan', 'FAN09G4182' => 'fan', 'FAN12G0496' => 'fan', 'FAN13G1027' => 'fan', 'FAN13G2951' => 'fan', 'FAN14G0705' => 'fan', 'FAN14G0720' => 'fan', 'FAN17G0201' => 'fan', 'FAN17G2665' => 'fan', 'FAN18G1456' => 'fan', 'FAN18G1525' => 'fan', 'FAN18G3500' => 'fan', 'FAN28G2670' => 'fan', 'FvH4_1g12391' => 'fve', 'FvH4_4g23220' => 'fve', 'FvH4_5g08810' => 'fve', 'FvH4_5g28960' => 'fve', 'FvH4_6g42820' => 'fve', 'FvH4_6g51110' => 'fve', 'Glyma.02G051802' => 'gma', 'Glyma.04G185300' => 'gma', 'Glyma.05G202900' => 'gma', 'Glyma.08G010300' => 'gma', 'Glyma.16G131900' => 'gma', 'Glyma.17G087900' => 'gma', 'Gohir.A07G048600' => 'ghi', 'Gohir.A11G179000' => 'ghi', 'Gohir.A12G140900' => 'ghi', 'Gohir.A12G140950' => 'ghi', 'Gohir.A12G191700' => 'ghi', 'Gohir.A13G086300' => 'ghi', 'Gohir.D07G052900' => 'ghi', 'Gohir.D11G186600' => 'ghi', 'Gohir.D12G145575' => 'ghi', 'Gohir.D12G145650' => 'ghi', 'Gohir.D12G145725' => 'ghi', 'Gohir.D12G194050' => 'ghi', 'Gohir.D13G091800' => 'ghi', 'Gorai.001G055900' => 'gra', 'Gorai.007G198400' => 'gra', 'Gorai.008G157000' => 'gra', 'Gorai.008G157100' => 'gra', 'Gorai.008G208700' => 'gra', 'Gorai.010G138700' => 'gra', 'GSVIVG01000977001' => 'vvi', 'GSVIVG01007708001' => 'vvi', 'GSVIVG01008587001' => 'vvi', 'GSVIVG01018849001' => 'vvi', 'GSVIVG01032432001' => 'vvi', 'HanXRQChr02g0034131' => 'han', 'HanXRQChr02g0035981' => 'han', 'HanXRQChr02g0035991' => 'han', 'HanXRQChr05g0155611' => 'han', 'HanXRQChr05g0155621' => 'han', 'HanXRQChr08g0236501' => 'han', 'HanXRQChr09g0261321' => 'han', 'HanXRQChr09g0272081' => 'han', 'HanXRQChr10g0310741' => 'han', 'HanXRQChr11g0325591' => 'han', 'HanXRQChr12g0385691' => 'han', 'HanXRQChr13g0387801' => 'han', 'HanXRQChr15g0463011' => 'han', 'Haze_03826' => 'cav', 'Haze_03827' => 'cav', 'Haze_07183' => 'cav', 'Haze_07537' => 'cav', 'Haze_07539' => 'cav', 'Haze_12461' => 'cav', 'Haze_16115' => 'cav', 'Haze_16808' => 'cav', 'Haze_18531' => 'cav', 'Hma1.2p1_0046F.1_g026700' => 'hma', 'Hma1.2p1_0046F.1_g026710' => 'hma', 'Hma1.2p1_0168F.1_g074340' => 'hma', 'Hma1.2p1_0266F.1_g107030' => 'hma', 'Hma1.2p1_0266F.1_g107060' => 'hma', 'Hma1.2p1_0275F.1_g110510' => 'hma', 'Hma1.2p1_0592F.1_g185490' => 'hma', 'Hma1.2p1_0592F.1_g185500' => 'hma', 'Hma1.2p1_0592F.1_g185510' => 'hma', 'Hma1.2p1_0592F.1_g185520' => 'hma', 'Hma1.2p1_0592F.1_g185530' => 'hma', 'Hma1.2p1_0818F.1_g223450' => 'hma', 'HPP92_009708' => 'vpl', 'HPP92_009793' => 'vpl', 'HPP92_009796' => 'vpl', 'HPP92_009797' => 'vpl', 'HPP92_014940' => 'vpl', 'HPP92_014988' => 'vpl', 'Hund02463' => 'sun', 'Hund02760' => 'sun', 'Hund05071' => 'sun', 'Hund10108' => 'sun', 'Hund11204' => 'sun', 'Hund14016' => 'sun', 'Hund16464' => 'sun', 'Lalb_Chr09g0333391' => 'lal', 'Lalb_Chr11g0070461' => 'lal', 'Lalb_Chr12g0201671' => 'lal', 'Lalb_Chr13g0297161' => 'lal', 'Lj1g0002823' => 'lja', 'Lj3C1074T6' => 'lonja', 'Lj4A212T28' => 'lonja', 'Lj4g0005516' => 'lja', 'Lj4g0013705' => 'lja', 'Lj4g0027865' => 'lja', 'Lj5C92G16' => 'lonja', 'Lj5C92T12' => 'lonja', 'Lj7C596T3' => 'lonja', 'Lj9A446G59' => 'lonja', 'Lj9A482G21' => 'lonja', 'Lsat_1_v5_gn_1_28261' => 'lsa', 'Lsat_1_v5_gn_1_28281' => 'lsa', 'Lsat_1_v5_gn_1_32721' => 'lsa', 'Lsat_1_v5_gn_4_151760' => 'lsa', 'Lsat_1_v5_gn_4_2120' => 'lsa', 'Lsat_1_v5_gn_4_75761' => 'lsa', 'Lsat_1_v5_gn_5_10920' => 'lsa', 'Manes.02G099900' => 'mes', 'Manes.11G096200' => 'mes', 'Manes.12G007200' => 'mes', 'Manes.14G048300' => 'mes', 'Manes.17G114700' => 'mes', 'Mapoly0002s0070' => 'mpo', 'Mapoly0029s0099' => 'mpo', 'MBI07_g24742_MAGBIO' => 'mbi', 'MBI10_g27988_MAGBIO' => 'mbi', 'MBI11_g13057_MAGBIO' => 'mbi', 'MD02G1137200' => 'mdo', 'MD06G1137200' => 'mdo', 'MD07G1122300' => 'mdo', 'MD09G1078200' => 'mdo', 'MD13G1123700' => 'mdo', 'MD14G1151900' => 'mdo', 'MD17G1030900' => 'mdo', 'MD17G1068200' => 'mdo', 'MD17G1068600' => 'mdo', 'Medtr3g077540' => 'mtr', 'Medtr4g105530' => 'mtr', 'Medtr8g076580' => 'mtr', 'Medtr8g076590' => 'mtr', 'Medtr8g096410' => 'mtr', 'MELO3C016411.2' => 'cme', 'MELO3C017780.2' => 'cme', 'MELO3C022560.2' => 'cme', 'MELO3C026187.2' => 'cme', 'MELO3C026286.2' => 'cme', 'MELO3C032854.2' => 'cme', 'Migut.H02495' => 'egut', 'Migut.I00561' => 'egut', 'Migut.K01015' => 'egut', 'Migut.K01016' => 'egut', 'Migut.L00743' => 'egut', 'Migut.L00744' => 'egut', 'Migut.L00746' => 'egut', 'Migut.L00798' => 'egut', 'Migut.L00799' => 'egut', 'Migut.N02096' => 'egut', 'MSTRG.11259' => 'ama', 'MSTRG.23142' => 'ama', 'MSTRG.2499' => 'ama', 'Nitab4.5_0000003g0730' => 'nta', 'Nitab4.5_0000137g0020' => 'nta', 'Nitab4.5_0000721g0210' => 'nta', 'Nitab4.5_0000723g0050' => 'nta', 'Nitab4.5_0000913g0070' => 'nta', 'Nitab4.5_0001332g0040' => 'nta', 'Nitab4.5_0001771g0050' => 'nta', 'Nitab4.5_0001918g0050' => 'nta', 'Nitab4.5_0002686g0030' => 'nta', 'Nitab4.5_0003156g0020' => 'nta', 'Nitab4.5_0003383g0040' => 'nta', 'Nitab4.5_0003918g0010' => 'nta', 'Nitab4.5_0006760g0010' => 'nta', 'Nn1g05981' => 'nnu', 'Nn1g06288' => 'nnu', 'Nn3g16371' => 'nnu', 'Nn3g16786' => 'nnu', 'Nn4g22232' => 'nnu', 'Oeu005144.1' => 'oeu', 'Oeu005145.1' => 'oeu', 'Oeu011348.1' => 'oeu', 'Oeu016415.1' => 'oeu', 'Oeu023501.1' => 'oeu', 'Oeu044473.1' => 'oeu', 'Oeu048892.2' => 'oeu', 'Os01g0549200' => 'osa', 'Os02g0469300' => 'osa', 'Os04g0311100' => 'osa', 'Os06g0474900' => 'osa', 'Os10g0181700' => 'osa', 'Os11g0454800' => 'osa', 'Peaxi162Scf00037g00714' => 'pax', 'Peaxi162Scf00084g01217' => 'pax', 'Peaxi162Scf00257g00217' => 'pax', 'Peaxi162Scf00516g00215' => 'pax', 'Peaxi162Scf00689g00123' => 'pax', 'PGR044G2719' => 'pgr', 'PGR083G1360' => 'pgr', 'PGR102G2849' => 'pgr', 'PGR119G2534' => 'pgr', 'PGSC0003DMG400003538' => 'stu', 'PGSC0003DMG400028138' => 'stu', 'PGSC0003DMG400031732' => 'stu', 'PGSC0003DMG400038165' => 'stu', 'Phvul.002G284600' => 'pvu', 'Phvul.003G258200' => 'pvu', 'Phvul.009G176500' => 'pvu', 'Potri.003G167201' => 'ptr', 'Potri.005G118400' => 'ptr', 'Potri.012G089000' => 'ptr', 'Potri.012G102800' => 'ptr', 'Potri.015G079400' => 'ptr', 'Potri.015G100900' => 'ptr', 'Pp3c14_9810' => 'ppa', 'Pp3c15_10450' => 'ppa', 'Pp3c20_19150' => 'ppa', 'Pp3c23_12740' => 'ppa', 'Pp3c23_6310' => 'ppa', 'Pp3c24_3720' => 'ppa', 'Pp3c27_2580' => 'ppa', 'Pp3c9_8990' => 'ppa', 'PRCOL_00002854' => 'pco', 'Prupe.1G221200' => 'ppe', 'Prupe.3G289000' => 'ppe', 'Prupe.5G147000' => 'ppe', 'Prupe.6G157300' => 'ppe', 'Prupe.7G163400' => 'ppe', 'Psat0s2177g0040' => 'psa', 'Psat3g174760' => 'psa', 'Psat3g192160' => 'psa', 'Psat4g058520' => 'psa', 'Psat4g096840' => 'psa', 'Psat7g037320' => 'psa', 'PSO017G1274' => 'pso', 'PSO017G5166' => 'pso', 'PSO063G4558' => 'pso', 'PSO170G4458' => 'pso', 'PSO170G5005' => 'pso', 'PSO210G6156' => 'pso', 'PSO210G6635' => 'pso', 'PSO210G7397' => 'pso', 'PSO210G7700' => 'pso', 'PSO455G0035' => 'pso', 'PSO455G0180' => 'pso', 'PSO478G4515' => 'pso', 'PSO832G1305' => 'pso', 'PSO832G3489' => 'pso', 'QL02p075247' => 'qlo', 'QL03p051148' => 'qlo', 'QL05p010313' => 'qlo', 'QL06p034627' => 'qlo', 'QL10p001889' => 'qlo', 'QL10p010846' => 'qlo', 'RcHm_v2.0_Chr1g0350621' => 'rch', 'RcHm_v2.0_Chr1g0350641' => 'rch', 'RcHm_v2.0_Chr2g0092891' => 'rch', 'RcHm_v2.0_Chr2g0100251' => 'rch', 'RcHm_v2.0_Chr2g0158661' => 'rch', 'RcHm_v2.0_Chr2g0172741' => 'rch', 'RcHm_v2.0_Chr4g0429571' => 'rch', 'RcHm_v2.0_Chr5g0042471' => 'rch', 'RcHm_v2.0_Chr7g0189451' => 'rch', 'Rhsim08G0052000' => 'rsi', 'Rhsim08G0174400' => 'rsi', 'Rhsim08G0193200' => 'rsi', 'Rhsim10G0214800' => 'rsi', 'Rhsim10G0214900' => 'rsi', 'Rhsim10G0215000' => 'rsi', 'Rhsim12G0022900' => 'rsi', 'Rhsim12G0177500' => 'rsi', 'Rhsim12G0177700' => 'rsi', 'Sabra03G0122600' => 'sbr', 'Sabra05G0097400' => 'sbr', 'Sabra12G0064100' => 'sbr', 'Sabra15G0121300' => 'sbr', 'SalBow2G0642' => 'sbo', 'SalBow5G2667' => 'sbo', 'SalBow5G4873' => 'sbo', 'SalBow8G2395' => 'sbo', 'Sc03g0003290' => 'sci', 'Sc10g0010130' => 'sci', 'Sc22g0003650' => 'sci', 'Sed0001603' => 'sed', 'Sed0004259' => 'sed', 'Sed0006789' => 'sed', 'Sed0011838' => 'sed', 'Sed0012964' => 'sed', 'Sed0016383' => 'sed', 'Sed0019010' => 'sed', 'Sed0020188' => 'sed', 'SEGI_04702' => 'sgi', 'SEGI_17231' => 'sgi', 'SEGI_18877' => 'sgi', 'SEGI_25196' => 'sgi', 'SEGI_25515' => 'sgi', 'SEGI_28445' => 'sgi', 'SEGI_37452' => 'sgi', 'SGA_v2.0_scaffold188G40336' => 'sas', 'SGA_v2.0_scaffold228G43247' => 'sas', 'SGA_v2.0_scaffold280G46853' => 'sas', 'SGA_v2.0_scaffold34G13808' => 'sas', 'SGA_v2.0_scaffold40G15576' => 'sas', 'SGA_v2.0_scaffold611G53188' => 'sas', 'SGA_v2.0_scaffold78G25461' => 'sas', 'SGA_v2.0_scaffold90G27888' => 'sas', 'SHI08601' => 'shi', 'SHI08606' => 'shi', 'SHI17117' => 'shi', 'SHI17119' => 'shi', 'SMO118G0201' => 'smo', 'SMO169G0247' => 'smo', 'SMO176G0006' => 'smo', 'SMO176G0015' => 'smo', 'SMO202G0006' => 'smo', 'SMO240G0050' => 'smo', 'SMO286G0009' => 'smo', 'SMO338G0033' => 'smo', 'SMO356G0533' => 'smo', 'SMO364G0382' => 'smo', 'SMO367G0166' => 'smo', 'SMO367G1098' => 'smo', 'Solyc01g009920.3' => 'sly', 'Solyc01g099300.3' => 'sly', 'Solyc02g084700.3' => 'sly', 'Solyc03g097520.3' => 'sly', 'Solyc06g071580.3' => 'sly', 'Solyc10g081760.3' => 'sly', 'Sopen01g005480' => 'spe', 'Sopen01g042850' => 'spe', 'Sopen02g029370' => 'spe', 'Sopen03g028280' => 'spe', 'Sopen06g027870' => 'spe', 'Sopen10g032270' => 'spe', 'Sp5g18180' => 'spa', 'Sp6g12880' => 'spa', 'Sp6g30850' => 'spa', 'Sp7g22960' => 'spa', 'Sp7g34010' => 'spa', 'SpUn1326_0010' => 'spa', 'TAR371G0242' => 'tar', 'TAR622G0638' => 'tar', 'TAR628G1548' => 'tar', 'TAR629G1079' => 'tar', 'TAR629G3413' => 'tar', 'THA.LOC104804249' => 'tha', 'THA.LOC104808315' => 'tha', 'THA.LOC104809238' => 'tha', 'THA.LOC104825484' => 'tha', 'Thecc.01G025500' => 'tca', 'Thecc.03G015800' => 'tca', 'Thecc.03G018000' => 'tca', 'Thecc.03G134800' => 'tca', 'Thecc.04G014700' => 'tca', 'Thhalv10006991m.g' => 'esa', 'Thhalv10012707m.g' => 'esa', 'Thhalv10015739m.g' => 'esa', 'Thhalv10024553m.g' => 'esa', 'Thhalv10024673m.g' => 'esa', 'Thhalv10029187m.g' => 'esa', 'TPR.G12971' => 'tpr', 'TPR.G29396' => 'tpr', 'TPR.G33376' => 'tpr', 'TPR.G35508' => 'tpr', 'TPR.G35516' => 'tpr', 'TPR.G37317' => 'tpr', 'TPR.G37389' => 'tpr', 'TPR.G37523' => 'tpr', 'TPR.G559' => 'tpr', 'TWI14G0070' => 'twi', 'TWI14G0729' => 'twi', 'TWI18G0596' => 'twi', 'TWI39G0780' => 'twi', 'TWI39G0850' => 'twi', 'TWI73G1052' => 'twi', 'unitig_52.g17485' => 'ugi', 'unitig_61.g26355' => 'ugi', 'vmacro01040' => 'vma', 'vmacro16731' => 'vma', 'vmacro18270' => 'vma', 'vmacro19142' => 'vma', 'vmacro19407' => 'vma', 'vmacro19408' => 'vma', 'vmacro21899' => 'vma', 'vmacro21900' => 'vma', 'vmacro21901' => 'vma', 'VMungo0251G0490' => 'vmu', 'VMungo0251G1748' => 'vmu', 'VMungo1309G0421' => 'vmu', 'Zm00001eb086500' => 'zma', 'Zm00001eb150680' => 'zma', 'Zm00001eb162330' => 'zma', 'Zm00001eb203130' => 'zma', 'Zm00001eb369480' => 'zma', 'Zm00001eb382340' => 'zma', 'Zm00001eb416360' => 'zma' ), 'gf_id' => 'HOM05D000902', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000902' ), 'data_identifier' => 'HOM05D000902', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000902', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '663', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02470' => 'bna', 'A01p16260' => 'bna', 'A02p01680' => 'bna', 'A03p16600' => 'bna', 'A03p55660' => 'bna', 'A03p64160' => 'bna', 'A03p64170' => 'bna', 'A08p31900' => 'bna', 'A09p59530' => 'bna', 'A10p08230' => 'bna', 'A10p25090' => 'bna', 'Aa31LG3G7100' => 'aar', 'Aa31LG3G7110' => 'aar', 'Aa31LG6G13160' => 'aar', 'Aa31LG7G10770' => 'aar', 'Aa31LG7G3830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2723' => 'aag', 'Actinidia08045' => 'ach', 'Actinidia08888' => 'ach', 'Actinidia18333' => 'ach', 'Actinidia19334' => 'ach', 'Actinidia25552' => 'ach', 'Actinidia26089' => 'ach', 'Actinidia30615' => 'ach', 'Actinidia30616' => 'ach', 'Actinidia33083' => 'ach', 'Actinidia35762' => 'ach', 'Ah.02g110620' => 'amhyb', 'Ah.11g046390' => 'amhyb', 'AL1G31670' => 'aly', 'AL6G23730' => 'aly', 'AL7G14740' => 'aly', 'AL7G14750' => 'aly', 'AL7G14760' => 'aly', 'AL7G28220' => 'aly', 'AL8G24940' => 'aly', 'Aqoxy3G01665' => 'aox', 'Aqoxy3G02853' => 'aox', 'Aqoxy5G01513' => 'aox', 'Aqoxy5G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8SKA4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ75LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKDA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0LJZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7REX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZP4YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWX7I5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2QKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS0L9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPCD8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q161UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC7XCF' => 'arhy', 'AT1G19100' => 'ath', 'AT4G24970' => 'ath', 'AT4G36270' => 'ath', 'AT4G36280' => 'ath', 'AT4G36290' => 'ath', 'AT5G13130' => 'ath', 'AT5G50780' => 'ath', 'ATR0582G266' => 'atr', 'ATR0661G195' => 'atr', 'ATR1152G031' => 'atr', 'Atru.chr11.2382' => 'acertr', 'Atru.chr12.2337' => 'acertr', 'Atru.chr3.744' => 'acertr', 'Atru.chr6.1870' => 'acertr', 'Atru.chr9.2515' => 'acertr', 'AUR62004120' => 'cqu', 'AUR62005667' => 'cqu', 'AUR62007634' => 'cqu', 'AUR62008186' => 'cqu', 'AUR62008187' => 'cqu', 'AUR62008188' => 'cqu', 'AUR62027954' => 'cqu', 'AUR62028766' => 'cqu', 'AUR62028767' => 'cqu', 'AUR62028768' => 'cqu', 'AUR62028886' => 'cqu', 'AUR62029563' => 'cqu', 'AUR62038832' => 'cqu', 'BcaB01g04149' => 'bca', 'BcaB03g12940' => 'bca', 'BcaB03g13090' => 'bca', 'BcaB03g14466' => 'bca', 'BcaB05g24035' => 'bca', 'BcaC01g06050' => 'bca', 'BcaC04g19148' => 'bca', 'BcaC04g20761' => 'bca', 'BcaC06g32845' => 'bca', 'BcaC07g41274' => 'bca', 'BcaC09g50827' => 'bca', 'BcaNung00741' => 'bca', 'BcaNung00742' => 'bca', 'BcaNung01859' => 'bca', 'BcaNung03985' => 'bca', 'BcaNung03989' => 'bca', 'BcaNung05661' => 'bca', 'BolC1t00257H' => 'bol', 'BolC1t01956H' => 'bol', 'BolC2t06534H' => 'bol', 'BolC3t14334H' => 'bol', 'BolC5t30451H' => 'bol', 'BolC7t45880H' => 'bol', 'BolC7t46586H' => 'bol', 'BolC8t49301H' => 'bol', 'BolC8t51837H' => 'bol', 'BolC9t56822H' => 'bol', 'BolC9t59235H' => 'bol', 'BraA01t00234Z' => 'bra', 'BraA01t01563Z' => 'bra', 'BraA02t05147Z' => 'bra', 'BraA03t10947Z' => 'bra', 'BraA03t14633Z' => 'bra', 'BraA08t35112Z' => 'bra', 'BraA09t41330Z' => 'bra', 'BraA10t44570Z' => 'bra', 'C01p02670' => 'bna', 'C01p20260' => 'bna', 'C02p05890' => 'bna', 'C03p19530' => 'bna', 'C05p17470' => 'bna', 'C07p53900' => 'bna', 'C07p61630' => 'bna', 'C08p16800' => 'bna', 'C08p42810' => 'bna', 'C09p39480' => 'bna', 'C09p63980' => 'bna', 'CAN.G1001.7' => 'can', 'CAN.G1034.55' => 'can', 'CAN.G143.7' => 'can', 'CAN.G3340.1' => 'can', 'CAN.G358.19' => 'can', 'CAN.G373.2' => 'can', 'CAN.G674.16' => 'can', 'CAN.G674.17' => 'can', 'CAN.G674.18' => 'can', 'CAN.G732.2' => 'can', 'CAN.G732.3' => 'can', 'CAN.G993.39' => 'can', 'CANSAT01G2052' => 'cansat', 'CANSAT80G0070' => 'cansat', 'CANSAT80G0483' => 'cansat', 'CANSAT80G0625' => 'cansat', 'CARHR019690' => 'chi', 'CARHR080280' => 'chi', 'CARHR152750' => 'chi', 'CARHR152760' => 'chi', 'CARHR152770' => 'chi', 'CARHR200340' => 'chi', 'CARHR232370' => 'chi', 'CARHR244670' => 'chi', 'CARHR244680' => 'chi', 'CARHR257520' => 'chi', 'Carub.0001s1872' => 'cru', 'Carub.0006s1130' => 'cru', 'Carub.0007s0396' => 'cru', 'Carub.0007s0397' => 'cru', 'Carub.0007s1608' => 'cru', 'Carub.0008s1068' => 'cru', 'Carub.0008s1077' => 'cru', 'Ca_16158_v3' => 'car', 'Ca_17571_v3' => 'car', 'Ca_21936_v3' => 'car', 'Ca_22350_v3' => 'car', 'CBR_g22445' => 'cbr', 'CBR_g26290' => 'cbr', 'Cc04_g09610' => 'ccan', 'Cc04_g12280' => 'ccan', 'Cc07_g10230' => 'ccan', 'CDE02G0093' => 'cde', 'CDE02G0701' => 'cde', 'CDE04G1050' => 'cde', 'CDE05G1833' => 'cde', 'CDE05G3058' => 'cde', 'CDE05G3380' => 'cde', 'CDE06G0536' => 'cde', 'Cfa006923' => 'cfa', 'Cfa009402' => 'cfa', 'Cfa018751' => 'cfa', 'Cfa019164' => 'cfa', 'Cfa022935' => 'cfa', 'Ciclev10019081m.g' => 'ccl', 'Ciclev10025076m.g' => 'ccl', 'Ciclev10030712m.g' => 'ccl', 'Ciclev10033760m.g' => 'ccl', 'CiPaw.05G105600' => 'cil', 'CiPaw.08G136700' => 'cil', 'CiPaw.11G003900' => 'cil', 'CiPaw.11G023700' => 'cil', 'CiPaw.12G003700' => 'cil', 'ClCG06G017100' => 'cla', 'ClCG06G018110' => 'cla', 'ClCG07G008800' => 'cla', 'ClCG07G015330' => 'cla', 'COL.COLO4_13698' => 'col', 'COL.COLO4_16659' => 'col', 'COL.COLO4_21986' => 'col', 'COL.COLO4_24049' => 'col', 'COL.COLO4_29061' => 'col', 'COL.COLO4_29075' => 'col', 'COL.COLO4_30094' => 'col', 'Cpa.g.c33689' => 'cpa', 'Cpa.g.sc108.39' => 'cpa', 'Cpa.g.sc108.41' => 'cpa', 'Cpa.g.sc1163.1' => 'cpa', 'Cpa.g.sc4.155' => 'cpa', 'Cpa.g.sc6.194' => 'cpa', 'CsaV3_1G000340' => 'csa', 'CsaV3_1G001400' => 'csa', 'CsaV3_4G002220' => 'csa', 'CsaV3_4G005370' => 'csa', 'CSS0007487' => 'camsi', 'CSS0008066' => 'camsi', 'CSS0009120' => 'camsi', 'CSS0015512' => 'camsi', 'CSS0022409' => 'camsi', 'CSS0025358' => 'camsi', 'CSS0044547' => 'camsi', 'DCAR_013057' => 'dca', 'DCAR_015058' => 'dca', 'DCAR_016027' => 'dca', 'DCAR_017327' => 'dca', 'DCAR_020743' => 'dca', 'DCAR_026157' => 'dca', 'DCAR_032339' => 'dca', 'DCAR_032340' => 'dca', 'Dinv11200' => 'din', 'Dinv11201' => 'din', 'Dinv20631' => 'din', 'Dinv23182' => 'din', 'Dinv33466' => 'din', 'Dinv33583' => 'din', 'Dinv38565' => 'din', 'Duzib068G0200' => 'dzi', 'Duzib147G0132' => 'dzi', 'Duzib147G0635' => 'dzi', 'Duzib205G1670' => 'dzi', 'Duzib251G0606' => 'dzi', 'ECA232G3336' => 'eca', 'ECA232G3763' => 'eca', 'ECA232G4845' => 'eca', 'ECA234G1607' => 'eca', 'ECA246G0932' => 'eca', 'ECA247G0781' => 'eca', 'ECA247G1932' => 'eca', 'ECA247G2079' => 'eca', 'ECA247G3338' => 'eca', 'ECA247G4115' => 'eca', 'EL10Ac3g06552' => 'bvu', 'EL10Ac5g10721' => 'bvu', 'EL10Ac5g10722' => 'bvu', 'EL10Ac5g10723' => 'bvu', 'EL10Ac5g11361' => 'bvu', 'EL10Ac6g13553' => 'bvu', 'EL10As8g23872' => 'bvu', 'Eucgr.B00250' => 'egr', 'Eucgr.B00251' => 'egr', 'Eucgr.B03533' => 'egr', 'Eucgr.I02381' => 'egr', 'Eucgr.K02700' => 'egr', 'FAN02G0174' => 'fan', 'FAN02G3146' => 'fan', 'FAN04G1672' => 'fan', 'FAN04G2273' => 'fan', 'FAN05G2791' => 'fan', 'FAN05G4035' => 'fan', 'FAN07G0834' => 'fan', 'FAN08G1198' => 'fan', 'FAN09G4182' => 'fan', 'FAN12G0496' => 'fan', 'FAN13G1027' => 'fan', 'FAN13G2951' => 'fan', 'FAN14G0705' => 'fan', 'FAN14G0720' => 'fan', 'FAN17G0201' => 'fan', 'FAN17G2665' => 'fan', 'FAN18G1456' => 'fan', 'FAN18G1525' => 'fan', 'FAN18G3500' => 'fan', 'FAN28G2670' => 'fan', 'FvH4_1g12391' => 'fve', 'FvH4_4g23220' => 'fve', 'FvH4_5g08810' => 'fve', 'FvH4_5g28960' => 'fve', 'FvH4_6g42820' => 'fve', 'FvH4_6g51110' => 'fve', 'Glyma.02G051802' => 'gma', 'Glyma.04G185300' => 'gma', 'Glyma.05G202900' => 'gma', 'Glyma.08G010300' => 'gma', 'Glyma.16G131900' => 'gma', 'Glyma.17G087900' => 'gma', 'Gohir.A07G048600' => 'ghi', 'Gohir.A11G179000' => 'ghi', 'Gohir.A12G140900' => 'ghi', 'Gohir.A12G140950' => 'ghi', 'Gohir.A12G191700' => 'ghi', 'Gohir.A13G086300' => 'ghi', 'Gohir.D07G052900' => 'ghi', 'Gohir.D11G186600' => 'ghi', 'Gohir.D12G145575' => 'ghi', 'Gohir.D12G145650' => 'ghi', 'Gohir.D12G145725' => 'ghi', 'Gohir.D12G194050' => 'ghi', 'Gohir.D13G091800' => 'ghi', 'Gorai.001G055900' => 'gra', 'Gorai.007G198400' => 'gra', 'Gorai.008G157000' => 'gra', 'Gorai.008G157100' => 'gra', 'Gorai.008G208700' => 'gra', 'Gorai.010G138700' => 'gra', 'GSVIVG01000977001' => 'vvi', 'GSVIVG01007708001' => 'vvi', 'GSVIVG01008587001' => 'vvi', 'GSVIVG01018849001' => 'vvi', 'GSVIVG01032432001' => 'vvi', 'HanXRQChr02g0034131' => 'han', 'HanXRQChr02g0035981' => 'han', 'HanXRQChr02g0035991' => 'han', 'HanXRQChr05g0155611' => 'han', 'HanXRQChr05g0155621' => 'han', 'HanXRQChr08g0236501' => 'han', 'HanXRQChr09g0261321' => 'han', 'HanXRQChr09g0272081' => 'han', 'HanXRQChr10g0310741' => 'han', 'HanXRQChr11g0325591' => 'han', 'HanXRQChr12g0385691' => 'han', 'HanXRQChr13g0387801' => 'han', 'HanXRQChr15g0463011' => 'han', 'Haze_03826' => 'cav', 'Haze_03827' => 'cav', 'Haze_07183' => 'cav', 'Haze_07537' => 'cav', 'Haze_07539' => 'cav', 'Haze_12461' => 'cav', 'Haze_16115' => 'cav', 'Haze_16808' => 'cav', 'Haze_18531' => 'cav', 'Hma1.2p1_0046F.1_g026700' => 'hma', 'Hma1.2p1_0046F.1_g026710' => 'hma', 'Hma1.2p1_0168F.1_g074340' => 'hma', 'Hma1.2p1_0266F.1_g107030' => 'hma', 'Hma1.2p1_0266F.1_g107060' => 'hma', 'Hma1.2p1_0275F.1_g110510' => 'hma', 'Hma1.2p1_0592F.1_g185490' => 'hma', 'Hma1.2p1_0592F.1_g185500' => 'hma', 'Hma1.2p1_0592F.1_g185510' => 'hma', 'Hma1.2p1_0592F.1_g185520' => 'hma', 'Hma1.2p1_0592F.1_g185530' => 'hma', 'Hma1.2p1_0818F.1_g223450' => 'hma', 'HPP92_009708' => 'vpl', 'HPP92_009793' => 'vpl', 'HPP92_009796' => 'vpl', 'HPP92_009797' => 'vpl', 'HPP92_014940' => 'vpl', 'HPP92_014988' => 'vpl', 'Hund02463' => 'sun', 'Hund02760' => 'sun', 'Hund05071' => 'sun', 'Hund10108' => 'sun', 'Hund11204' => 'sun', 'Hund14016' => 'sun', 'Hund16464' => 'sun', 'Lalb_Chr09g0333391' => 'lal', 'Lalb_Chr11g0070461' => 'lal', 'Lalb_Chr12g0201671' => 'lal', 'Lalb_Chr13g0297161' => 'lal', 'Lj1g0002823' => 'lja', 'Lj3C1074T6' => 'lonja', 'Lj4A212T28' => 'lonja', 'Lj4g0005516' => 'lja', 'Lj4g0013705' => 'lja', 'Lj4g0027865' => 'lja', 'Lj5C92G16' => 'lonja', 'Lj5C92T12' => 'lonja', 'Lj7C596T3' => 'lonja', 'Lj9A446G59' => 'lonja', 'Lj9A482G21' => 'lonja', 'Lsat_1_v5_gn_1_28261' => 'lsa', 'Lsat_1_v5_gn_1_28281' => 'lsa', 'Lsat_1_v5_gn_1_32721' => 'lsa', 'Lsat_1_v5_gn_4_151760' => 'lsa', 'Lsat_1_v5_gn_4_2120' => 'lsa', 'Lsat_1_v5_gn_4_75761' => 'lsa', 'Lsat_1_v5_gn_5_10920' => 'lsa', 'Manes.02G099900' => 'mes', 'Manes.11G096200' => 'mes', 'Manes.12G007200' => 'mes', 'Manes.14G048300' => 'mes', 'Manes.17G114700' => 'mes', 'Mapoly0002s0070' => 'mpo', 'Mapoly0029s0099' => 'mpo', 'MBI07_g24742_MAGBIO' => 'mbi', 'MBI10_g27988_MAGBIO' => 'mbi', 'MBI11_g13057_MAGBIO' => 'mbi', 'MD02G1137200' => 'mdo', 'MD06G1137200' => 'mdo', 'MD07G1122300' => 'mdo', 'MD09G1078200' => 'mdo', 'MD13G1123700' => 'mdo', 'MD14G1151900' => 'mdo', 'MD17G1030900' => 'mdo', 'MD17G1068200' => 'mdo', 'MD17G1068600' => 'mdo', 'Medtr3g077540' => 'mtr', 'Medtr4g105530' => 'mtr', 'Medtr8g076580' => 'mtr', 'Medtr8g076590' => 'mtr', 'Medtr8g096410' => 'mtr', 'MELO3C016411.2' => 'cme', 'MELO3C017780.2' => 'cme', 'MELO3C022560.2' => 'cme', 'MELO3C026187.2' => 'cme', 'MELO3C026286.2' => 'cme', 'MELO3C032854.2' => 'cme', 'Migut.H02495' => 'egut', 'Migut.I00561' => 'egut', 'Migut.K01015' => 'egut', 'Migut.K01016' => 'egut', 'Migut.L00743' => 'egut', 'Migut.L00744' => 'egut', 'Migut.L00746' => 'egut', 'Migut.L00798' => 'egut', 'Migut.L00799' => 'egut', 'Migut.N02096' => 'egut', 'MSTRG.11259' => 'ama', 'MSTRG.23142' => 'ama', 'MSTRG.2499' => 'ama', 'Nitab4.5_0000003g0730' => 'nta', 'Nitab4.5_0000137g0020' => 'nta', 'Nitab4.5_0000721g0210' => 'nta', 'Nitab4.5_0000723g0050' => 'nta', 'Nitab4.5_0000913g0070' => 'nta', 'Nitab4.5_0001332g0040' => 'nta', 'Nitab4.5_0001771g0050' => 'nta', 'Nitab4.5_0001918g0050' => 'nta', 'Nitab4.5_0002686g0030' => 'nta', 'Nitab4.5_0003156g0020' => 'nta', 'Nitab4.5_0003383g0040' => 'nta', 'Nitab4.5_0003918g0010' => 'nta', 'Nitab4.5_0006760g0010' => 'nta', 'Nn1g05981' => 'nnu', 'Nn1g06288' => 'nnu', 'Nn3g16371' => 'nnu', 'Nn3g16786' => 'nnu', 'Nn4g22232' => 'nnu', 'Oeu005144.1' => 'oeu', 'Oeu005145.1' => 'oeu', 'Oeu011348.1' => 'oeu', 'Oeu016415.1' => 'oeu', 'Oeu023501.1' => 'oeu', 'Oeu044473.1' => 'oeu', 'Oeu048892.2' => 'oeu', 'Os01g0549200' => 'osa', 'Os02g0469300' => 'osa', 'Os04g0311100' => 'osa', 'Os06g0474900' => 'osa', 'Os10g0181700' => 'osa', 'Os11g0454800' => 'osa', 'Peaxi162Scf00037g00714' => 'pax', 'Peaxi162Scf00084g01217' => 'pax', 'Peaxi162Scf00257g00217' => 'pax', 'Peaxi162Scf00516g00215' => 'pax', 'Peaxi162Scf00689g00123' => 'pax', 'PGR044G2719' => 'pgr', 'PGR083G1360' => 'pgr', 'PGR102G2849' => 'pgr', 'PGR119G2534' => 'pgr', 'PGSC0003DMG400003538' => 'stu', 'PGSC0003DMG400028138' => 'stu', 'PGSC0003DMG400031732' => 'stu', 'PGSC0003DMG400038165' => 'stu', 'Phvul.002G284600' => 'pvu', 'Phvul.003G258200' => 'pvu', 'Phvul.009G176500' => 'pvu', 'Potri.003G167201' => 'ptr', 'Potri.005G118400' => 'ptr', 'Potri.012G089000' => 'ptr', 'Potri.012G102800' => 'ptr', 'Potri.015G079400' => 'ptr', 'Potri.015G100900' => 'ptr', 'Pp3c14_9810' => 'ppa', 'Pp3c15_10450' => 'ppa', 'Pp3c20_19150' => 'ppa', 'Pp3c23_12740' => 'ppa', 'Pp3c23_6310' => 'ppa', 'Pp3c24_3720' => 'ppa', 'Pp3c27_2580' => 'ppa', 'Pp3c9_8990' => 'ppa', 'PRCOL_00002854' => 'pco', 'Prupe.1G221200' => 'ppe', 'Prupe.3G289000' => 'ppe', 'Prupe.5G147000' => 'ppe', 'Prupe.6G157300' => 'ppe', 'Prupe.7G163400' => 'ppe', 'Psat0s2177g0040' => 'psa', 'Psat3g174760' => 'psa', 'Psat3g192160' => 'psa', 'Psat4g058520' => 'psa', 'Psat4g096840' => 'psa', 'Psat7g037320' => 'psa', 'PSO017G1274' => 'pso', 'PSO017G5166' => 'pso', 'PSO063G4558' => 'pso', 'PSO170G4458' => 'pso', 'PSO170G5005' => 'pso', 'PSO210G6156' => 'pso', 'PSO210G6635' => 'pso', 'PSO210G7397' => 'pso', 'PSO210G7700' => 'pso', 'PSO455G0035' => 'pso', 'PSO455G0180' => 'pso', 'PSO478G4515' => 'pso', 'PSO832G1305' => 'pso', 'PSO832G3489' => 'pso', 'QL02p075247' => 'qlo', 'QL03p051148' => 'qlo', 'QL05p010313' => 'qlo', 'QL06p034627' => 'qlo', 'QL10p001889' => 'qlo', 'QL10p010846' => 'qlo', 'RcHm_v2.0_Chr1g0350621' => 'rch', 'RcHm_v2.0_Chr1g0350641' => 'rch', 'RcHm_v2.0_Chr2g0092891' => 'rch', 'RcHm_v2.0_Chr2g0100251' => 'rch', 'RcHm_v2.0_Chr2g0158661' => 'rch', 'RcHm_v2.0_Chr2g0172741' => 'rch', 'RcHm_v2.0_Chr4g0429571' => 'rch', 'RcHm_v2.0_Chr5g0042471' => 'rch', 'RcHm_v2.0_Chr7g0189451' => 'rch', 'Rhsim08G0052000' => 'rsi', 'Rhsim08G0174400' => 'rsi', 'Rhsim08G0193200' => 'rsi', 'Rhsim10G0214800' => 'rsi', 'Rhsim10G0214900' => 'rsi', 'Rhsim10G0215000' => 'rsi', 'Rhsim12G0022900' => 'rsi', 'Rhsim12G0177500' => 'rsi', 'Rhsim12G0177700' => 'rsi', 'Sabra03G0122600' => 'sbr', 'Sabra05G0097400' => 'sbr', 'Sabra12G0064100' => 'sbr', 'Sabra15G0121300' => 'sbr', 'SalBow2G0642' => 'sbo', 'SalBow5G2667' => 'sbo', 'SalBow5G4873' => 'sbo', 'SalBow8G2395' => 'sbo', 'Sc03g0003290' => 'sci', 'Sc10g0010130' => 'sci', 'Sc22g0003650' => 'sci', 'Sed0001603' => 'sed', 'Sed0004259' => 'sed', 'Sed0006789' => 'sed', 'Sed0011838' => 'sed', 'Sed0012964' => 'sed', 'Sed0016383' => 'sed', 'Sed0019010' => 'sed', 'Sed0020188' => 'sed', 'SEGI_04702' => 'sgi', 'SEGI_17231' => 'sgi', 'SEGI_18877' => 'sgi', 'SEGI_25196' => 'sgi', 'SEGI_25515' => 'sgi', 'SEGI_28445' => 'sgi', 'SEGI_37452' => 'sgi', 'SGA_v2.0_scaffold188G40336' => 'sas', 'SGA_v2.0_scaffold228G43247' => 'sas', 'SGA_v2.0_scaffold280G46853' => 'sas', 'SGA_v2.0_scaffold34G13808' => 'sas', 'SGA_v2.0_scaffold40G15576' => 'sas', 'SGA_v2.0_scaffold611G53188' => 'sas', 'SGA_v2.0_scaffold78G25461' => 'sas', 'SGA_v2.0_scaffold90G27888' => 'sas', 'SHI08601' => 'shi', 'SHI08606' => 'shi', 'SHI17117' => 'shi', 'SHI17119' => 'shi', 'SMO118G0201' => 'smo', 'SMO169G0247' => 'smo', 'SMO176G0006' => 'smo', 'SMO176G0015' => 'smo', 'SMO202G0006' => 'smo', 'SMO240G0050' => 'smo', 'SMO286G0009' => 'smo', 'SMO338G0033' => 'smo', 'SMO356G0533' => 'smo', 'SMO364G0382' => 'smo', 'SMO367G0166' => 'smo', 'SMO367G1098' => 'smo', 'Solyc01g009920.3' => 'sly', 'Solyc01g099300.3' => 'sly', 'Solyc02g084700.3' => 'sly', 'Solyc03g097520.3' => 'sly', 'Solyc06g071580.3' => 'sly', 'Solyc10g081760.3' => 'sly', 'Sopen01g005480' => 'spe', 'Sopen01g042850' => 'spe', 'Sopen02g029370' => 'spe', 'Sopen03g028280' => 'spe', 'Sopen06g027870' => 'spe', 'Sopen10g032270' => 'spe', 'Sp5g18180' => 'spa', 'Sp6g12880' => 'spa', 'Sp6g30850' => 'spa', 'Sp7g22960' => 'spa', 'Sp7g34010' => 'spa', 'SpUn1326_0010' => 'spa', 'TAR371G0242' => 'tar', 'TAR622G0638' => 'tar', 'TAR628G1548' => 'tar', 'TAR629G1079' => 'tar', 'TAR629G3413' => 'tar', 'THA.LOC104804249' => 'tha', 'THA.LOC104808315' => 'tha', 'THA.LOC104809238' => 'tha', 'THA.LOC104825484' => 'tha', 'Thecc.01G025500' => 'tca', 'Thecc.03G015800' => 'tca', 'Thecc.03G018000' => 'tca', 'Thecc.03G134800' => 'tca', 'Thecc.04G014700' => 'tca', 'Thhalv10006991m.g' => 'esa', 'Thhalv10012707m.g' => 'esa', 'Thhalv10015739m.g' => 'esa', 'Thhalv10024553m.g' => 'esa', 'Thhalv10024673m.g' => 'esa', 'Thhalv10029187m.g' => 'esa', 'TPR.G12971' => 'tpr', 'TPR.G29396' => 'tpr', 'TPR.G33376' => 'tpr', 'TPR.G35508' => 'tpr', 'TPR.G35516' => 'tpr', 'TPR.G37317' => 'tpr', 'TPR.G37389' => 'tpr', 'TPR.G37523' => 'tpr', 'TPR.G559' => 'tpr', 'TWI14G0070' => 'twi', 'TWI14G0729' => 'twi', 'TWI18G0596' => 'twi', 'TWI39G0780' => 'twi', 'TWI39G0850' => 'twi', 'TWI73G1052' => 'twi', 'unitig_52.g17485' => 'ugi', 'unitig_61.g26355' => 'ugi', 'vmacro01040' => 'vma', 'vmacro16731' => 'vma', 'vmacro18270' => 'vma', 'vmacro19142' => 'vma', 'vmacro19407' => 'vma', 'vmacro19408' => 'vma', 'vmacro21899' => 'vma', 'vmacro21900' => 'vma', 'vmacro21901' => 'vma', 'VMungo0251G0490' => 'vmu', 'VMungo0251G1748' => 'vmu', 'VMungo1309G0421' => 'vmu', 'Zm00001eb086500' => 'zma', 'Zm00001eb150680' => 'zma', 'Zm00001eb162330' => 'zma', 'Zm00001eb203130' => 'zma', 'Zm00001eb369480' => 'zma', 'Zm00001eb382340' => 'zma', 'Zm00001eb416360' => 'zma' ) $gf_id = 'HOM05D000902' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000902' ) $data_identifier = 'HOM05D000902' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 13, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 10, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 6, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 9, 'hma' => (int) 12, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 4, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 6, 'ppa' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 6, 'rch' => (int) 9, 'rsi' => (int) 9, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 12, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 3, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416360' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000902', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '663', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02470' => 'bna', 'A01p16260' => 'bna', 'A02p01680' => 'bna', 'A03p16600' => 'bna', 'A03p55660' => 'bna', 'A03p64160' => 'bna', 'A03p64170' => 'bna', 'A08p31900' => 'bna', 'A09p59530' => 'bna', 'A10p08230' => 'bna', 'A10p25090' => 'bna', 'Aa31LG3G7100' => 'aar', 'Aa31LG3G7110' => 'aar', 'Aa31LG6G13160' => 'aar', 'Aa31LG7G10770' => 'aar', 'Aa31LG7G3830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2723' => 'aag', 'Actinidia08045' => 'ach', 'Actinidia08888' => 'ach', 'Actinidia18333' => 'ach', 'Actinidia19334' => 'ach', 'Actinidia25552' => 'ach', 'Actinidia26089' => 'ach', 'Actinidia30615' => 'ach', 'Actinidia30616' => 'ach', 'Actinidia33083' => 'ach', 'Actinidia35762' => 'ach', 'Ah.02g110620' => 'amhyb', 'Ah.11g046390' => 'amhyb', 'AL1G31670' => 'aly', 'AL6G23730' => 'aly', 'AL7G14740' => 'aly', 'AL7G14750' => 'aly', 'AL7G14760' => 'aly', 'AL7G28220' => 'aly', 'AL8G24940' => 'aly', 'Aqoxy3G01665' => 'aox', 'Aqoxy3G02853' => 'aox', 'Aqoxy5G01513' => 'aox', 'Aqoxy5G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8SKA4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ75LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKDA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0LJZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7REX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZP4YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWX7I5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2QKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS0L9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPCD8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q161UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC7XCF' => 'arhy', 'AT1G19100' => 'ath', 'AT4G24970' => 'ath', 'AT4G36270' => 'ath', 'AT4G36280' => 'ath', 'AT4G36290' => 'ath', 'AT5G13130' => 'ath', 'AT5G50780' => 'ath', 'ATR0582G266' => 'atr', 'ATR0661G195' => 'atr', 'ATR1152G031' => 'atr', 'Atru.chr11.2382' => 'acertr', 'Atru.chr12.2337' => 'acertr', 'Atru.chr3.744' => 'acertr', 'Atru.chr6.1870' => 'acertr', 'Atru.chr9.2515' => 'acertr', 'AUR62004120' => 'cqu', 'AUR62005667' => 'cqu', 'AUR62007634' => 'cqu', 'AUR62008186' => 'cqu', 'AUR62008187' => 'cqu', 'AUR62008188' => 'cqu', 'AUR62027954' => 'cqu', 'AUR62028766' => 'cqu', 'AUR62028767' => 'cqu', 'AUR62028768' => 'cqu', 'AUR62028886' => 'cqu', 'AUR62029563' => 'cqu', 'AUR62038832' => 'cqu', 'BcaB01g04149' => 'bca', 'BcaB03g12940' => 'bca', 'BcaB03g13090' => 'bca', 'BcaB03g14466' => 'bca', 'BcaB05g24035' => 'bca', 'BcaC01g06050' => 'bca', 'BcaC04g19148' => 'bca', 'BcaC04g20761' => 'bca', 'BcaC06g32845' => 'bca', 'BcaC07g41274' => 'bca', 'BcaC09g50827' => 'bca', 'BcaNung00741' => 'bca', 'BcaNung00742' => 'bca', 'BcaNung01859' => 'bca', 'BcaNung03985' => 'bca', 'BcaNung03989' => 'bca', 'BcaNung05661' => 'bca', 'BolC1t00257H' => 'bol', 'BolC1t01956H' => 'bol', 'BolC2t06534H' => 'bol', 'BolC3t14334H' => 'bol', 'BolC5t30451H' => 'bol', 'BolC7t45880H' => 'bol', 'BolC7t46586H' => 'bol', 'BolC8t49301H' => 'bol', 'BolC8t51837H' => 'bol', 'BolC9t56822H' => 'bol', 'BolC9t59235H' => 'bol', 'BraA01t00234Z' => 'bra', 'BraA01t01563Z' => 'bra', 'BraA02t05147Z' => 'bra', 'BraA03t10947Z' => 'bra', 'BraA03t14633Z' => 'bra', 'BraA08t35112Z' => 'bra', 'BraA09t41330Z' => 'bra', 'BraA10t44570Z' => 'bra', 'C01p02670' => 'bna', 'C01p20260' => 'bna', 'C02p05890' => 'bna', 'C03p19530' => 'bna', 'C05p17470' => 'bna', 'C07p53900' => 'bna', 'C07p61630' => 'bna', 'C08p16800' => 'bna', 'C08p42810' => 'bna', 'C09p39480' => 'bna', 'C09p63980' => 'bna', 'CAN.G1001.7' => 'can', 'CAN.G1034.55' => 'can', 'CAN.G143.7' => 'can', 'CAN.G3340.1' => 'can', 'CAN.G358.19' => 'can', 'CAN.G373.2' => 'can', 'CAN.G674.16' => 'can', 'CAN.G674.17' => 'can', 'CAN.G674.18' => 'can', 'CAN.G732.2' => 'can', 'CAN.G732.3' => 'can', 'CAN.G993.39' => 'can', 'CANSAT01G2052' => 'cansat', 'CANSAT80G0070' => 'cansat', 'CANSAT80G0483' => 'cansat', 'CANSAT80G0625' => 'cansat', 'CARHR019690' => 'chi', 'CARHR080280' => 'chi', 'CARHR152750' => 'chi', 'CARHR152760' => 'chi', 'CARHR152770' => 'chi', 'CARHR200340' => 'chi', 'CARHR232370' => 'chi', 'CARHR244670' => 'chi', 'CARHR244680' => 'chi', 'CARHR257520' => 'chi', 'Carub.0001s1872' => 'cru', 'Carub.0006s1130' => 'cru', 'Carub.0007s0396' => 'cru', 'Carub.0007s0397' => 'cru', 'Carub.0007s1608' => 'cru', 'Carub.0008s1068' => 'cru', 'Carub.0008s1077' => 'cru', 'Ca_16158_v3' => 'car', 'Ca_17571_v3' => 'car', 'Ca_21936_v3' => 'car', 'Ca_22350_v3' => 'car', 'CBR_g22445' => 'cbr', 'CBR_g26290' => 'cbr', 'Cc04_g09610' => 'ccan', 'Cc04_g12280' => 'ccan', 'Cc07_g10230' => 'ccan', 'CDE02G0093' => 'cde', 'CDE02G0701' => 'cde', 'CDE04G1050' => 'cde', 'CDE05G1833' => 'cde', 'CDE05G3058' => 'cde', 'CDE05G3380' => 'cde', 'CDE06G0536' => 'cde', 'Cfa006923' => 'cfa', 'Cfa009402' => 'cfa', 'Cfa018751' => 'cfa', 'Cfa019164' => 'cfa', 'Cfa022935' => 'cfa', 'Ciclev10019081m.g' => 'ccl', 'Ciclev10025076m.g' => 'ccl', 'Ciclev10030712m.g' => 'ccl', 'Ciclev10033760m.g' => 'ccl', 'CiPaw.05G105600' => 'cil', 'CiPaw.08G136700' => 'cil', 'CiPaw.11G003900' => 'cil', 'CiPaw.11G023700' => 'cil', 'CiPaw.12G003700' => 'cil', 'ClCG06G017100' => 'cla', 'ClCG06G018110' => 'cla', 'ClCG07G008800' => 'cla', 'ClCG07G015330' => 'cla', 'COL.COLO4_13698' => 'col', 'COL.COLO4_16659' => 'col', 'COL.COLO4_21986' => 'col', 'COL.COLO4_24049' => 'col', 'COL.COLO4_29061' => 'col', 'COL.COLO4_29075' => 'col', 'COL.COLO4_30094' => 'col', 'Cpa.g.c33689' => 'cpa', 'Cpa.g.sc108.39' => 'cpa', 'Cpa.g.sc108.41' => 'cpa', 'Cpa.g.sc1163.1' => 'cpa', 'Cpa.g.sc4.155' => 'cpa', 'Cpa.g.sc6.194' => 'cpa', 'CsaV3_1G000340' => 'csa', 'CsaV3_1G001400' => 'csa', 'CsaV3_4G002220' => 'csa', 'CsaV3_4G005370' => 'csa', 'CSS0007487' => 'camsi', 'CSS0008066' => 'camsi', 'CSS0009120' => 'camsi', 'CSS0015512' => 'camsi', 'CSS0022409' => 'camsi', 'CSS0025358' => 'camsi', 'CSS0044547' => 'camsi', 'DCAR_013057' => 'dca', 'DCAR_015058' => 'dca', 'DCAR_016027' => 'dca', 'DCAR_017327' => 'dca', 'DCAR_020743' => 'dca', 'DCAR_026157' => 'dca', 'DCAR_032339' => 'dca', 'DCAR_032340' => 'dca', 'Dinv11200' => 'din', 'Dinv11201' => 'din', 'Dinv20631' => 'din', 'Dinv23182' => 'din', 'Dinv33466' => 'din', 'Dinv33583' => 'din', 'Dinv38565' => 'din', 'Duzib068G0200' => 'dzi', 'Duzib147G0132' => 'dzi', 'Duzib147G0635' => 'dzi', 'Duzib205G1670' => 'dzi', 'Duzib251G0606' => 'dzi', 'ECA232G3336' => 'eca', 'ECA232G3763' => 'eca', 'ECA232G4845' => 'eca', 'ECA234G1607' => 'eca', 'ECA246G0932' => 'eca', 'ECA247G0781' => 'eca', 'ECA247G1932' => 'eca', 'ECA247G2079' => 'eca', 'ECA247G3338' => 'eca', 'ECA247G4115' => 'eca', 'EL10Ac3g06552' => 'bvu', 'EL10Ac5g10721' => 'bvu', 'EL10Ac5g10722' => 'bvu', 'EL10Ac5g10723' => 'bvu', 'EL10Ac5g11361' => 'bvu', 'EL10Ac6g13553' => 'bvu', 'EL10As8g23872' => 'bvu', 'Eucgr.B00250' => 'egr', 'Eucgr.B00251' => 'egr', 'Eucgr.B03533' => 'egr', 'Eucgr.I02381' => 'egr', 'Eucgr.K02700' => 'egr', 'FAN02G0174' => 'fan', 'FAN02G3146' => 'fan', 'FAN04G1672' => 'fan', 'FAN04G2273' => 'fan', 'FAN05G2791' => 'fan', 'FAN05G4035' => 'fan', 'FAN07G0834' => 'fan', 'FAN08G1198' => 'fan', 'FAN09G4182' => 'fan', 'FAN12G0496' => 'fan', 'FAN13G1027' => 'fan', 'FAN13G2951' => 'fan', 'FAN14G0705' => 'fan', 'FAN14G0720' => 'fan', 'FAN17G0201' => 'fan', 'FAN17G2665' => 'fan', 'FAN18G1456' => 'fan', 'FAN18G1525' => 'fan', 'FAN18G3500' => 'fan', 'FAN28G2670' => 'fan', 'FvH4_1g12391' => 'fve', 'FvH4_4g23220' => 'fve', 'FvH4_5g08810' => 'fve', 'FvH4_5g28960' => 'fve', 'FvH4_6g42820' => 'fve', 'FvH4_6g51110' => 'fve', 'Glyma.02G051802' => 'gma', 'Glyma.04G185300' => 'gma', 'Glyma.05G202900' => 'gma', 'Glyma.08G010300' => 'gma', 'Glyma.16G131900' => 'gma', 'Glyma.17G087900' => 'gma', 'Gohir.A07G048600' => 'ghi', 'Gohir.A11G179000' => 'ghi', 'Gohir.A12G140900' => 'ghi', 'Gohir.A12G140950' => 'ghi', 'Gohir.A12G191700' => 'ghi', 'Gohir.A13G086300' => 'ghi', 'Gohir.D07G052900' => 'ghi', 'Gohir.D11G186600' => 'ghi', 'Gohir.D12G145575' => 'ghi', 'Gohir.D12G145650' => 'ghi', 'Gohir.D12G145725' => 'ghi', 'Gohir.D12G194050' => 'ghi', 'Gohir.D13G091800' => 'ghi', 'Gorai.001G055900' => 'gra', 'Gorai.007G198400' => 'gra', 'Gorai.008G157000' => 'gra', 'Gorai.008G157100' => 'gra', 'Gorai.008G208700' => 'gra', 'Gorai.010G138700' => 'gra', 'GSVIVG01000977001' => 'vvi', 'GSVIVG01007708001' => 'vvi', 'GSVIVG01008587001' => 'vvi', 'GSVIVG01018849001' => 'vvi', 'GSVIVG01032432001' => 'vvi', 'HanXRQChr02g0034131' => 'han', 'HanXRQChr02g0035981' => 'han', 'HanXRQChr02g0035991' => 'han', 'HanXRQChr05g0155611' => 'han', 'HanXRQChr05g0155621' => 'han', 'HanXRQChr08g0236501' => 'han', 'HanXRQChr09g0261321' => 'han', 'HanXRQChr09g0272081' => 'han', 'HanXRQChr10g0310741' => 'han', 'HanXRQChr11g0325591' => 'han', 'HanXRQChr12g0385691' => 'han', 'HanXRQChr13g0387801' => 'han', 'HanXRQChr15g0463011' => 'han', 'Haze_03826' => 'cav', 'Haze_03827' => 'cav', 'Haze_07183' => 'cav', 'Haze_07537' => 'cav', 'Haze_07539' => 'cav', 'Haze_12461' => 'cav', 'Haze_16115' => 'cav', 'Haze_16808' => 'cav', 'Haze_18531' => 'cav', 'Hma1.2p1_0046F.1_g026700' => 'hma', 'Hma1.2p1_0046F.1_g026710' => 'hma', 'Hma1.2p1_0168F.1_g074340' => 'hma', 'Hma1.2p1_0266F.1_g107030' => 'hma', 'Hma1.2p1_0266F.1_g107060' => 'hma', 'Hma1.2p1_0275F.1_g110510' => 'hma', 'Hma1.2p1_0592F.1_g185490' => 'hma', 'Hma1.2p1_0592F.1_g185500' => 'hma', 'Hma1.2p1_0592F.1_g185510' => 'hma', 'Hma1.2p1_0592F.1_g185520' => 'hma', 'Hma1.2p1_0592F.1_g185530' => 'hma', 'Hma1.2p1_0818F.1_g223450' => 'hma', 'HPP92_009708' => 'vpl', 'HPP92_009793' => 'vpl', 'HPP92_009796' => 'vpl', 'HPP92_009797' => 'vpl', 'HPP92_014940' => 'vpl', 'HPP92_014988' => 'vpl', 'Hund02463' => 'sun', 'Hund02760' => 'sun', 'Hund05071' => 'sun', 'Hund10108' => 'sun', 'Hund11204' => 'sun', 'Hund14016' => 'sun', 'Hund16464' => 'sun', 'Lalb_Chr09g0333391' => 'lal', 'Lalb_Chr11g0070461' => 'lal', 'Lalb_Chr12g0201671' => 'lal', 'Lalb_Chr13g0297161' => 'lal', 'Lj1g0002823' => 'lja', 'Lj3C1074T6' => 'lonja', 'Lj4A212T28' => 'lonja', 'Lj4g0005516' => 'lja', 'Lj4g0013705' => 'lja', 'Lj4g0027865' => 'lja', 'Lj5C92G16' => 'lonja', 'Lj5C92T12' => 'lonja', 'Lj7C596T3' => 'lonja', 'Lj9A446G59' => 'lonja', 'Lj9A482G21' => 'lonja', 'Lsat_1_v5_gn_1_28261' => 'lsa', 'Lsat_1_v5_gn_1_28281' => 'lsa', 'Lsat_1_v5_gn_1_32721' => 'lsa', 'Lsat_1_v5_gn_4_151760' => 'lsa', 'Lsat_1_v5_gn_4_2120' => 'lsa', 'Lsat_1_v5_gn_4_75761' => 'lsa', 'Lsat_1_v5_gn_5_10920' => 'lsa', 'Manes.02G099900' => 'mes', 'Manes.11G096200' => 'mes', 'Manes.12G007200' => 'mes', 'Manes.14G048300' => 'mes', 'Manes.17G114700' => 'mes', 'Mapoly0002s0070' => 'mpo', 'Mapoly0029s0099' => 'mpo', 'MBI07_g24742_MAGBIO' => 'mbi', 'MBI10_g27988_MAGBIO' => 'mbi', 'MBI11_g13057_MAGBIO' => 'mbi', 'MD02G1137200' => 'mdo', 'MD06G1137200' => 'mdo', 'MD07G1122300' => 'mdo', 'MD09G1078200' => 'mdo', 'MD13G1123700' => 'mdo', 'MD14G1151900' => 'mdo', 'MD17G1030900' => 'mdo', 'MD17G1068200' => 'mdo', 'MD17G1068600' => 'mdo', 'Medtr3g077540' => 'mtr', 'Medtr4g105530' => 'mtr', 'Medtr8g076580' => 'mtr', 'Medtr8g076590' => 'mtr', 'Medtr8g096410' => 'mtr', 'MELO3C016411.2' => 'cme', 'MELO3C017780.2' => 'cme', 'MELO3C022560.2' => 'cme', 'MELO3C026187.2' => 'cme', 'MELO3C026286.2' => 'cme', 'MELO3C032854.2' => 'cme', 'Migut.H02495' => 'egut', 'Migut.I00561' => 'egut', 'Migut.K01015' => 'egut', 'Migut.K01016' => 'egut', 'Migut.L00743' => 'egut', 'Migut.L00744' => 'egut', 'Migut.L00746' => 'egut', 'Migut.L00798' => 'egut', 'Migut.L00799' => 'egut', 'Migut.N02096' => 'egut', 'MSTRG.11259' => 'ama', 'MSTRG.23142' => 'ama', 'MSTRG.2499' => 'ama', 'Nitab4.5_0000003g0730' => 'nta', 'Nitab4.5_0000137g0020' => 'nta', 'Nitab4.5_0000721g0210' => 'nta', 'Nitab4.5_0000723g0050' => 'nta', 'Nitab4.5_0000913g0070' => 'nta', 'Nitab4.5_0001332g0040' => 'nta', 'Nitab4.5_0001771g0050' => 'nta', 'Nitab4.5_0001918g0050' => 'nta', 'Nitab4.5_0002686g0030' => 'nta', 'Nitab4.5_0003156g0020' => 'nta', 'Nitab4.5_0003383g0040' => 'nta', 'Nitab4.5_0003918g0010' => 'nta', 'Nitab4.5_0006760g0010' => 'nta', 'Nn1g05981' => 'nnu', 'Nn1g06288' => 'nnu', 'Nn3g16371' => 'nnu', 'Nn3g16786' => 'nnu', 'Nn4g22232' => 'nnu', 'Oeu005144.1' => 'oeu', 'Oeu005145.1' => 'oeu', 'Oeu011348.1' => 'oeu', 'Oeu016415.1' => 'oeu', 'Oeu023501.1' => 'oeu', 'Oeu044473.1' => 'oeu', 'Oeu048892.2' => 'oeu', 'Os01g0549200' => 'osa', 'Os02g0469300' => 'osa', 'Os04g0311100' => 'osa', 'Os06g0474900' => 'osa', 'Os10g0181700' => 'osa', 'Os11g0454800' => 'osa', 'Peaxi162Scf00037g00714' => 'pax', 'Peaxi162Scf00084g01217' => 'pax', 'Peaxi162Scf00257g00217' => 'pax', 'Peaxi162Scf00516g00215' => 'pax', 'Peaxi162Scf00689g00123' => 'pax', 'PGR044G2719' => 'pgr', 'PGR083G1360' => 'pgr', 'PGR102G2849' => 'pgr', 'PGR119G2534' => 'pgr', 'PGSC0003DMG400003538' => 'stu', 'PGSC0003DMG400028138' => 'stu', 'PGSC0003DMG400031732' => 'stu', 'PGSC0003DMG400038165' => 'stu', 'Phvul.002G284600' => 'pvu', 'Phvul.003G258200' => 'pvu', 'Phvul.009G176500' => 'pvu', 'Potri.003G167201' => 'ptr', 'Potri.005G118400' => 'ptr', 'Potri.012G089000' => 'ptr', 'Potri.012G102800' => 'ptr', 'Potri.015G079400' => 'ptr', 'Potri.015G100900' => 'ptr', 'Pp3c14_9810' => 'ppa', 'Pp3c15_10450' => 'ppa', 'Pp3c20_19150' => 'ppa', 'Pp3c23_12740' => 'ppa', 'Pp3c23_6310' => 'ppa', 'Pp3c24_3720' => 'ppa', 'Pp3c27_2580' => 'ppa', 'Pp3c9_8990' => 'ppa', 'PRCOL_00002854' => 'pco', 'Prupe.1G221200' => 'ppe', 'Prupe.3G289000' => 'ppe', 'Prupe.5G147000' => 'ppe', 'Prupe.6G157300' => 'ppe', 'Prupe.7G163400' => 'ppe', 'Psat0s2177g0040' => 'psa', 'Psat3g174760' => 'psa', 'Psat3g192160' => 'psa', 'Psat4g058520' => 'psa', 'Psat4g096840' => 'psa', 'Psat7g037320' => 'psa', 'PSO017G1274' => 'pso', 'PSO017G5166' => 'pso', 'PSO063G4558' => 'pso', 'PSO170G4458' => 'pso', 'PSO170G5005' => 'pso', 'PSO210G6156' => 'pso', 'PSO210G6635' => 'pso', 'PSO210G7397' => 'pso', 'PSO210G7700' => 'pso', 'PSO455G0035' => 'pso', 'PSO455G0180' => 'pso', 'PSO478G4515' => 'pso', 'PSO832G1305' => 'pso', 'PSO832G3489' => 'pso', 'QL02p075247' => 'qlo', 'QL03p051148' => 'qlo', 'QL05p010313' => 'qlo', 'QL06p034627' => 'qlo', 'QL10p001889' => 'qlo', 'QL10p010846' => 'qlo', 'RcHm_v2.0_Chr1g0350621' => 'rch', 'RcHm_v2.0_Chr1g0350641' => 'rch', 'RcHm_v2.0_Chr2g0092891' => 'rch', 'RcHm_v2.0_Chr2g0100251' => 'rch', 'RcHm_v2.0_Chr2g0158661' => 'rch', 'RcHm_v2.0_Chr2g0172741' => 'rch', 'RcHm_v2.0_Chr4g0429571' => 'rch', 'RcHm_v2.0_Chr5g0042471' => 'rch', 'RcHm_v2.0_Chr7g0189451' => 'rch', 'Rhsim08G0052000' => 'rsi', 'Rhsim08G0174400' => 'rsi', 'Rhsim08G0193200' => 'rsi', 'Rhsim10G0214800' => 'rsi', 'Rhsim10G0214900' => 'rsi', 'Rhsim10G0215000' => 'rsi', 'Rhsim12G0022900' => 'rsi', 'Rhsim12G0177500' => 'rsi', 'Rhsim12G0177700' => 'rsi', 'Sabra03G0122600' => 'sbr', 'Sabra05G0097400' => 'sbr', 'Sabra12G0064100' => 'sbr', 'Sabra15G0121300' => 'sbr', 'SalBow2G0642' => 'sbo', 'SalBow5G2667' => 'sbo', 'SalBow5G4873' => 'sbo', 'SalBow8G2395' => 'sbo', 'Sc03g0003290' => 'sci', 'Sc10g0010130' => 'sci', 'Sc22g0003650' => 'sci', 'Sed0001603' => 'sed', 'Sed0004259' => 'sed', 'Sed0006789' => 'sed', 'Sed0011838' => 'sed', 'Sed0012964' => 'sed', 'Sed0016383' => 'sed', 'Sed0019010' => 'sed', 'Sed0020188' => 'sed', 'SEGI_04702' => 'sgi', 'SEGI_17231' => 'sgi', 'SEGI_18877' => 'sgi', 'SEGI_25196' => 'sgi', 'SEGI_25515' => 'sgi', 'SEGI_28445' => 'sgi', 'SEGI_37452' => 'sgi', 'SGA_v2.0_scaffold188G40336' => 'sas', 'SGA_v2.0_scaffold228G43247' => 'sas', 'SGA_v2.0_scaffold280G46853' => 'sas', 'SGA_v2.0_scaffold34G13808' => 'sas', 'SGA_v2.0_scaffold40G15576' => 'sas', 'SGA_v2.0_scaffold611G53188' => 'sas', 'SGA_v2.0_scaffold78G25461' => 'sas', 'SGA_v2.0_scaffold90G27888' => 'sas', 'SHI08601' => 'shi', 'SHI08606' => 'shi', 'SHI17117' => 'shi', 'SHI17119' => 'shi', 'SMO118G0201' => 'smo', 'SMO169G0247' => 'smo', 'SMO176G0006' => 'smo', 'SMO176G0015' => 'smo', 'SMO202G0006' => 'smo', 'SMO240G0050' => 'smo', 'SMO286G0009' => 'smo', 'SMO338G0033' => 'smo', 'SMO356G0533' => 'smo', 'SMO364G0382' => 'smo', 'SMO367G0166' => 'smo', 'SMO367G1098' => 'smo', 'Solyc01g009920.3' => 'sly', 'Solyc01g099300.3' => 'sly', 'Solyc02g084700.3' => 'sly', 'Solyc03g097520.3' => 'sly', 'Solyc06g071580.3' => 'sly', 'Solyc10g081760.3' => 'sly', 'Sopen01g005480' => 'spe', 'Sopen01g042850' => 'spe', 'Sopen02g029370' => 'spe', 'Sopen03g028280' => 'spe', 'Sopen06g027870' => 'spe', 'Sopen10g032270' => 'spe', 'Sp5g18180' => 'spa', 'Sp6g12880' => 'spa', 'Sp6g30850' => 'spa', 'Sp7g22960' => 'spa', 'Sp7g34010' => 'spa', 'SpUn1326_0010' => 'spa', 'TAR371G0242' => 'tar', 'TAR622G0638' => 'tar', 'TAR628G1548' => 'tar', 'TAR629G1079' => 'tar', 'TAR629G3413' => 'tar', 'THA.LOC104804249' => 'tha', 'THA.LOC104808315' => 'tha', 'THA.LOC104809238' => 'tha', 'THA.LOC104825484' => 'tha', 'Thecc.01G025500' => 'tca', 'Thecc.03G015800' => 'tca', 'Thecc.03G018000' => 'tca', 'Thecc.03G134800' => 'tca', 'Thecc.04G014700' => 'tca', 'Thhalv10006991m.g' => 'esa', 'Thhalv10012707m.g' => 'esa', 'Thhalv10015739m.g' => 'esa', 'Thhalv10024553m.g' => 'esa', 'Thhalv10024673m.g' => 'esa', 'Thhalv10029187m.g' => 'esa', 'TPR.G12971' => 'tpr', 'TPR.G29396' => 'tpr', 'TPR.G33376' => 'tpr', 'TPR.G35508' => 'tpr', 'TPR.G35516' => 'tpr', 'TPR.G37317' => 'tpr', 'TPR.G37389' => 'tpr', 'TPR.G37523' => 'tpr', 'TPR.G559' => 'tpr', 'TWI14G0070' => 'twi', 'TWI14G0729' => 'twi', 'TWI18G0596' => 'twi', 'TWI39G0780' => 'twi', 'TWI39G0850' => 'twi', 'TWI73G1052' => 'twi', 'unitig_52.g17485' => 'ugi', 'unitig_61.g26355' => 'ugi', 'vmacro01040' => 'vma', 'vmacro16731' => 'vma', 'vmacro18270' => 'vma', 'vmacro19142' => 'vma', 'vmacro19407' => 'vma', 'vmacro19408' => 'vma', 'vmacro21899' => 'vma', 'vmacro21900' => 'vma', 'vmacro21901' => 'vma', 'VMungo0251G0490' => 'vmu', 'VMungo0251G1748' => 'vmu', 'VMungo1309G0421' => 'vmu', 'Zm00001eb086500' => 'zma', 'Zm00001eb150680' => 'zma', 'Zm00001eb162330' => 'zma', 'Zm00001eb203130' => 'zma', 'Zm00001eb369480' => 'zma', 'Zm00001eb382340' => 'zma', 'Zm00001eb416360' => 'zma' ), 'gf_id' => 'HOM05D000902', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000902' ), 'data_identifier' => 'HOM05D000902', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000902', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '663', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02470' => 'bna', 'A01p16260' => 'bna', 'A02p01680' => 'bna', 'A03p16600' => 'bna', 'A03p55660' => 'bna', 'A03p64160' => 'bna', 'A03p64170' => 'bna', 'A08p31900' => 'bna', 'A09p59530' => 'bna', 'A10p08230' => 'bna', 'A10p25090' => 'bna', 'Aa31LG3G7100' => 'aar', 'Aa31LG3G7110' => 'aar', 'Aa31LG6G13160' => 'aar', 'Aa31LG7G10770' => 'aar', 'Aa31LG7G3830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2723' => 'aag', 'Actinidia08045' => 'ach', 'Actinidia08888' => 'ach', 'Actinidia18333' => 'ach', 'Actinidia19334' => 'ach', 'Actinidia25552' => 'ach', 'Actinidia26089' => 'ach', 'Actinidia30615' => 'ach', 'Actinidia30616' => 'ach', 'Actinidia33083' => 'ach', 'Actinidia35762' => 'ach', 'Ah.02g110620' => 'amhyb', 'Ah.11g046390' => 'amhyb', 'AL1G31670' => 'aly', 'AL6G23730' => 'aly', 'AL7G14740' => 'aly', 'AL7G14750' => 'aly', 'AL7G14760' => 'aly', 'AL7G28220' => 'aly', 'AL8G24940' => 'aly', 'Aqoxy3G01665' => 'aox', 'Aqoxy3G02853' => 'aox', 'Aqoxy5G01513' => 'aox', 'Aqoxy5G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8SKA4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ75LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKDA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0LJZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7REX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZP4YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWX7I5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2QKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS0L9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPCD8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q161UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC7XCF' => 'arhy', 'AT1G19100' => 'ath', 'AT4G24970' => 'ath', 'AT4G36270' => 'ath', 'AT4G36280' => 'ath', 'AT4G36290' => 'ath', 'AT5G13130' => 'ath', 'AT5G50780' => 'ath', 'ATR0582G266' => 'atr', 'ATR0661G195' => 'atr', 'ATR1152G031' => 'atr', 'Atru.chr11.2382' => 'acertr', 'Atru.chr12.2337' => 'acertr', 'Atru.chr3.744' => 'acertr', 'Atru.chr6.1870' => 'acertr', 'Atru.chr9.2515' => 'acertr', 'AUR62004120' => 'cqu', 'AUR62005667' => 'cqu', 'AUR62007634' => 'cqu', 'AUR62008186' => 'cqu', 'AUR62008187' => 'cqu', 'AUR62008188' => 'cqu', 'AUR62027954' => 'cqu', 'AUR62028766' => 'cqu', 'AUR62028767' => 'cqu', 'AUR62028768' => 'cqu', 'AUR62028886' => 'cqu', 'AUR62029563' => 'cqu', 'AUR62038832' => 'cqu', 'BcaB01g04149' => 'bca', 'BcaB03g12940' => 'bca', 'BcaB03g13090' => 'bca', 'BcaB03g14466' => 'bca', 'BcaB05g24035' => 'bca', 'BcaC01g06050' => 'bca', 'BcaC04g19148' => 'bca', 'BcaC04g20761' => 'bca', 'BcaC06g32845' => 'bca', 'BcaC07g41274' => 'bca', 'BcaC09g50827' => 'bca', 'BcaNung00741' => 'bca', 'BcaNung00742' => 'bca', 'BcaNung01859' => 'bca', 'BcaNung03985' => 'bca', 'BcaNung03989' => 'bca', 'BcaNung05661' => 'bca', 'BolC1t00257H' => 'bol', 'BolC1t01956H' => 'bol', 'BolC2t06534H' => 'bol', 'BolC3t14334H' => 'bol', 'BolC5t30451H' => 'bol', 'BolC7t45880H' => 'bol', 'BolC7t46586H' => 'bol', 'BolC8t49301H' => 'bol', 'BolC8t51837H' => 'bol', 'BolC9t56822H' => 'bol', 'BolC9t59235H' => 'bol', 'BraA01t00234Z' => 'bra', 'BraA01t01563Z' => 'bra', 'BraA02t05147Z' => 'bra', 'BraA03t10947Z' => 'bra', 'BraA03t14633Z' => 'bra', 'BraA08t35112Z' => 'bra', 'BraA09t41330Z' => 'bra', 'BraA10t44570Z' => 'bra', 'C01p02670' => 'bna', 'C01p20260' => 'bna', 'C02p05890' => 'bna', 'C03p19530' => 'bna', 'C05p17470' => 'bna', 'C07p53900' => 'bna', 'C07p61630' => 'bna', 'C08p16800' => 'bna', 'C08p42810' => 'bna', 'C09p39480' => 'bna', 'C09p63980' => 'bna', 'CAN.G1001.7' => 'can', 'CAN.G1034.55' => 'can', 'CAN.G143.7' => 'can', 'CAN.G3340.1' => 'can', 'CAN.G358.19' => 'can', 'CAN.G373.2' => 'can', 'CAN.G674.16' => 'can', 'CAN.G674.17' => 'can', 'CAN.G674.18' => 'can', 'CAN.G732.2' => 'can', 'CAN.G732.3' => 'can', 'CAN.G993.39' => 'can', 'CANSAT01G2052' => 'cansat', 'CANSAT80G0070' => 'cansat', 'CANSAT80G0483' => 'cansat', 'CANSAT80G0625' => 'cansat', 'CARHR019690' => 'chi', 'CARHR080280' => 'chi', 'CARHR152750' => 'chi', 'CARHR152760' => 'chi', 'CARHR152770' => 'chi', 'CARHR200340' => 'chi', 'CARHR232370' => 'chi', 'CARHR244670' => 'chi', 'CARHR244680' => 'chi', 'CARHR257520' => 'chi', 'Carub.0001s1872' => 'cru', 'Carub.0006s1130' => 'cru', 'Carub.0007s0396' => 'cru', 'Carub.0007s0397' => 'cru', 'Carub.0007s1608' => 'cru', 'Carub.0008s1068' => 'cru', 'Carub.0008s1077' => 'cru', 'Ca_16158_v3' => 'car', 'Ca_17571_v3' => 'car', 'Ca_21936_v3' => 'car', 'Ca_22350_v3' => 'car', 'CBR_g22445' => 'cbr', 'CBR_g26290' => 'cbr', 'Cc04_g09610' => 'ccan', 'Cc04_g12280' => 'ccan', 'Cc07_g10230' => 'ccan', 'CDE02G0093' => 'cde', 'CDE02G0701' => 'cde', 'CDE04G1050' => 'cde', 'CDE05G1833' => 'cde', 'CDE05G3058' => 'cde', 'CDE05G3380' => 'cde', 'CDE06G0536' => 'cde', 'Cfa006923' => 'cfa', 'Cfa009402' => 'cfa', 'Cfa018751' => 'cfa', 'Cfa019164' => 'cfa', 'Cfa022935' => 'cfa', 'Ciclev10019081m.g' => 'ccl', 'Ciclev10025076m.g' => 'ccl', 'Ciclev10030712m.g' => 'ccl', 'Ciclev10033760m.g' => 'ccl', 'CiPaw.05G105600' => 'cil', 'CiPaw.08G136700' => 'cil', 'CiPaw.11G003900' => 'cil', 'CiPaw.11G023700' => 'cil', 'CiPaw.12G003700' => 'cil', 'ClCG06G017100' => 'cla', 'ClCG06G018110' => 'cla', 'ClCG07G008800' => 'cla', 'ClCG07G015330' => 'cla', 'COL.COLO4_13698' => 'col', 'COL.COLO4_16659' => 'col', 'COL.COLO4_21986' => 'col', 'COL.COLO4_24049' => 'col', 'COL.COLO4_29061' => 'col', 'COL.COLO4_29075' => 'col', 'COL.COLO4_30094' => 'col', 'Cpa.g.c33689' => 'cpa', 'Cpa.g.sc108.39' => 'cpa', 'Cpa.g.sc108.41' => 'cpa', 'Cpa.g.sc1163.1' => 'cpa', 'Cpa.g.sc4.155' => 'cpa', 'Cpa.g.sc6.194' => 'cpa', 'CsaV3_1G000340' => 'csa', 'CsaV3_1G001400' => 'csa', 'CsaV3_4G002220' => 'csa', 'CsaV3_4G005370' => 'csa', 'CSS0007487' => 'camsi', 'CSS0008066' => 'camsi', 'CSS0009120' => 'camsi', 'CSS0015512' => 'camsi', 'CSS0022409' => 'camsi', 'CSS0025358' => 'camsi', 'CSS0044547' => 'camsi', 'DCAR_013057' => 'dca', 'DCAR_015058' => 'dca', 'DCAR_016027' => 'dca', 'DCAR_017327' => 'dca', 'DCAR_020743' => 'dca', 'DCAR_026157' => 'dca', 'DCAR_032339' => 'dca', 'DCAR_032340' => 'dca', 'Dinv11200' => 'din', 'Dinv11201' => 'din', 'Dinv20631' => 'din', 'Dinv23182' => 'din', 'Dinv33466' => 'din', 'Dinv33583' => 'din', 'Dinv38565' => 'din', 'Duzib068G0200' => 'dzi', 'Duzib147G0132' => 'dzi', 'Duzib147G0635' => 'dzi', 'Duzib205G1670' => 'dzi', 'Duzib251G0606' => 'dzi', 'ECA232G3336' => 'eca', 'ECA232G3763' => 'eca', 'ECA232G4845' => 'eca', 'ECA234G1607' => 'eca', 'ECA246G0932' => 'eca', 'ECA247G0781' => 'eca', 'ECA247G1932' => 'eca', 'ECA247G2079' => 'eca', 'ECA247G3338' => 'eca', 'ECA247G4115' => 'eca', 'EL10Ac3g06552' => 'bvu', 'EL10Ac5g10721' => 'bvu', 'EL10Ac5g10722' => 'bvu', 'EL10Ac5g10723' => 'bvu', 'EL10Ac5g11361' => 'bvu', 'EL10Ac6g13553' => 'bvu', 'EL10As8g23872' => 'bvu', 'Eucgr.B00250' => 'egr', 'Eucgr.B00251' => 'egr', 'Eucgr.B03533' => 'egr', 'Eucgr.I02381' => 'egr', 'Eucgr.K02700' => 'egr', 'FAN02G0174' => 'fan', 'FAN02G3146' => 'fan', 'FAN04G1672' => 'fan', 'FAN04G2273' => 'fan', 'FAN05G2791' => 'fan', 'FAN05G4035' => 'fan', 'FAN07G0834' => 'fan', 'FAN08G1198' => 'fan', 'FAN09G4182' => 'fan', 'FAN12G0496' => 'fan', 'FAN13G1027' => 'fan', 'FAN13G2951' => 'fan', 'FAN14G0705' => 'fan', 'FAN14G0720' => 'fan', 'FAN17G0201' => 'fan', 'FAN17G2665' => 'fan', 'FAN18G1456' => 'fan', 'FAN18G1525' => 'fan', 'FAN18G3500' => 'fan', 'FAN28G2670' => 'fan', 'FvH4_1g12391' => 'fve', 'FvH4_4g23220' => 'fve', 'FvH4_5g08810' => 'fve', 'FvH4_5g28960' => 'fve', 'FvH4_6g42820' => 'fve', 'FvH4_6g51110' => 'fve', 'Glyma.02G051802' => 'gma', 'Glyma.04G185300' => 'gma', 'Glyma.05G202900' => 'gma', 'Glyma.08G010300' => 'gma', 'Glyma.16G131900' => 'gma', 'Glyma.17G087900' => 'gma', 'Gohir.A07G048600' => 'ghi', 'Gohir.A11G179000' => 'ghi', 'Gohir.A12G140900' => 'ghi', 'Gohir.A12G140950' => 'ghi', 'Gohir.A12G191700' => 'ghi', 'Gohir.A13G086300' => 'ghi', 'Gohir.D07G052900' => 'ghi', 'Gohir.D11G186600' => 'ghi', 'Gohir.D12G145575' => 'ghi', 'Gohir.D12G145650' => 'ghi', 'Gohir.D12G145725' => 'ghi', 'Gohir.D12G194050' => 'ghi', 'Gohir.D13G091800' => 'ghi', 'Gorai.001G055900' => 'gra', 'Gorai.007G198400' => 'gra', 'Gorai.008G157000' => 'gra', 'Gorai.008G157100' => 'gra', 'Gorai.008G208700' => 'gra', 'Gorai.010G138700' => 'gra', 'GSVIVG01000977001' => 'vvi', 'GSVIVG01007708001' => 'vvi', 'GSVIVG01008587001' => 'vvi', 'GSVIVG01018849001' => 'vvi', 'GSVIVG01032432001' => 'vvi', 'HanXRQChr02g0034131' => 'han', 'HanXRQChr02g0035981' => 'han', 'HanXRQChr02g0035991' => 'han', 'HanXRQChr05g0155611' => 'han', 'HanXRQChr05g0155621' => 'han', 'HanXRQChr08g0236501' => 'han', 'HanXRQChr09g0261321' => 'han', 'HanXRQChr09g0272081' => 'han', 'HanXRQChr10g0310741' => 'han', 'HanXRQChr11g0325591' => 'han', 'HanXRQChr12g0385691' => 'han', 'HanXRQChr13g0387801' => 'han', 'HanXRQChr15g0463011' => 'han', 'Haze_03826' => 'cav', 'Haze_03827' => 'cav', 'Haze_07183' => 'cav', 'Haze_07537' => 'cav', 'Haze_07539' => 'cav', 'Haze_12461' => 'cav', 'Haze_16115' => 'cav', 'Haze_16808' => 'cav', 'Haze_18531' => 'cav', 'Hma1.2p1_0046F.1_g026700' => 'hma', 'Hma1.2p1_0046F.1_g026710' => 'hma', 'Hma1.2p1_0168F.1_g074340' => 'hma', 'Hma1.2p1_0266F.1_g107030' => 'hma', 'Hma1.2p1_0266F.1_g107060' => 'hma', 'Hma1.2p1_0275F.1_g110510' => 'hma', 'Hma1.2p1_0592F.1_g185490' => 'hma', 'Hma1.2p1_0592F.1_g185500' => 'hma', 'Hma1.2p1_0592F.1_g185510' => 'hma', 'Hma1.2p1_0592F.1_g185520' => 'hma', 'Hma1.2p1_0592F.1_g185530' => 'hma', 'Hma1.2p1_0818F.1_g223450' => 'hma', 'HPP92_009708' => 'vpl', 'HPP92_009793' => 'vpl', 'HPP92_009796' => 'vpl', 'HPP92_009797' => 'vpl', 'HPP92_014940' => 'vpl', 'HPP92_014988' => 'vpl', 'Hund02463' => 'sun', 'Hund02760' => 'sun', 'Hund05071' => 'sun', 'Hund10108' => 'sun', 'Hund11204' => 'sun', 'Hund14016' => 'sun', 'Hund16464' => 'sun', 'Lalb_Chr09g0333391' => 'lal', 'Lalb_Chr11g0070461' => 'lal', 'Lalb_Chr12g0201671' => 'lal', 'Lalb_Chr13g0297161' => 'lal', 'Lj1g0002823' => 'lja', 'Lj3C1074T6' => 'lonja', 'Lj4A212T28' => 'lonja', 'Lj4g0005516' => 'lja', 'Lj4g0013705' => 'lja', 'Lj4g0027865' => 'lja', 'Lj5C92G16' => 'lonja', 'Lj5C92T12' => 'lonja', 'Lj7C596T3' => 'lonja', 'Lj9A446G59' => 'lonja', 'Lj9A482G21' => 'lonja', 'Lsat_1_v5_gn_1_28261' => 'lsa', 'Lsat_1_v5_gn_1_28281' => 'lsa', 'Lsat_1_v5_gn_1_32721' => 'lsa', 'Lsat_1_v5_gn_4_151760' => 'lsa', 'Lsat_1_v5_gn_4_2120' => 'lsa', 'Lsat_1_v5_gn_4_75761' => 'lsa', 'Lsat_1_v5_gn_5_10920' => 'lsa', 'Manes.02G099900' => 'mes', 'Manes.11G096200' => 'mes', 'Manes.12G007200' => 'mes', 'Manes.14G048300' => 'mes', 'Manes.17G114700' => 'mes', 'Mapoly0002s0070' => 'mpo', 'Mapoly0029s0099' => 'mpo', 'MBI07_g24742_MAGBIO' => 'mbi', 'MBI10_g27988_MAGBIO' => 'mbi', 'MBI11_g13057_MAGBIO' => 'mbi', 'MD02G1137200' => 'mdo', 'MD06G1137200' => 'mdo', 'MD07G1122300' => 'mdo', 'MD09G1078200' => 'mdo', 'MD13G1123700' => 'mdo', 'MD14G1151900' => 'mdo', 'MD17G1030900' => 'mdo', 'MD17G1068200' => 'mdo', 'MD17G1068600' => 'mdo', 'Medtr3g077540' => 'mtr', 'Medtr4g105530' => 'mtr', 'Medtr8g076580' => 'mtr', 'Medtr8g076590' => 'mtr', 'Medtr8g096410' => 'mtr', 'MELO3C016411.2' => 'cme', 'MELO3C017780.2' => 'cme', 'MELO3C022560.2' => 'cme', 'MELO3C026187.2' => 'cme', 'MELO3C026286.2' => 'cme', 'MELO3C032854.2' => 'cme', 'Migut.H02495' => 'egut', 'Migut.I00561' => 'egut', 'Migut.K01015' => 'egut', 'Migut.K01016' => 'egut', 'Migut.L00743' => 'egut', 'Migut.L00744' => 'egut', 'Migut.L00746' => 'egut', 'Migut.L00798' => 'egut', 'Migut.L00799' => 'egut', 'Migut.N02096' => 'egut', 'MSTRG.11259' => 'ama', 'MSTRG.23142' => 'ama', 'MSTRG.2499' => 'ama', 'Nitab4.5_0000003g0730' => 'nta', 'Nitab4.5_0000137g0020' => 'nta', 'Nitab4.5_0000721g0210' => 'nta', 'Nitab4.5_0000723g0050' => 'nta', 'Nitab4.5_0000913g0070' => 'nta', 'Nitab4.5_0001332g0040' => 'nta', 'Nitab4.5_0001771g0050' => 'nta', 'Nitab4.5_0001918g0050' => 'nta', 'Nitab4.5_0002686g0030' => 'nta', 'Nitab4.5_0003156g0020' => 'nta', 'Nitab4.5_0003383g0040' => 'nta', 'Nitab4.5_0003918g0010' => 'nta', 'Nitab4.5_0006760g0010' => 'nta', 'Nn1g05981' => 'nnu', 'Nn1g06288' => 'nnu', 'Nn3g16371' => 'nnu', 'Nn3g16786' => 'nnu', 'Nn4g22232' => 'nnu', 'Oeu005144.1' => 'oeu', 'Oeu005145.1' => 'oeu', 'Oeu011348.1' => 'oeu', 'Oeu016415.1' => 'oeu', 'Oeu023501.1' => 'oeu', 'Oeu044473.1' => 'oeu', 'Oeu048892.2' => 'oeu', 'Os01g0549200' => 'osa', 'Os02g0469300' => 'osa', 'Os04g0311100' => 'osa', 'Os06g0474900' => 'osa', 'Os10g0181700' => 'osa', 'Os11g0454800' => 'osa', 'Peaxi162Scf00037g00714' => 'pax', 'Peaxi162Scf00084g01217' => 'pax', 'Peaxi162Scf00257g00217' => 'pax', 'Peaxi162Scf00516g00215' => 'pax', 'Peaxi162Scf00689g00123' => 'pax', 'PGR044G2719' => 'pgr', 'PGR083G1360' => 'pgr', 'PGR102G2849' => 'pgr', 'PGR119G2534' => 'pgr', 'PGSC0003DMG400003538' => 'stu', 'PGSC0003DMG400028138' => 'stu', 'PGSC0003DMG400031732' => 'stu', 'PGSC0003DMG400038165' => 'stu', 'Phvul.002G284600' => 'pvu', 'Phvul.003G258200' => 'pvu', 'Phvul.009G176500' => 'pvu', 'Potri.003G167201' => 'ptr', 'Potri.005G118400' => 'ptr', 'Potri.012G089000' => 'ptr', 'Potri.012G102800' => 'ptr', 'Potri.015G079400' => 'ptr', 'Potri.015G100900' => 'ptr', 'Pp3c14_9810' => 'ppa', 'Pp3c15_10450' => 'ppa', 'Pp3c20_19150' => 'ppa', 'Pp3c23_12740' => 'ppa', 'Pp3c23_6310' => 'ppa', 'Pp3c24_3720' => 'ppa', 'Pp3c27_2580' => 'ppa', 'Pp3c9_8990' => 'ppa', 'PRCOL_00002854' => 'pco', 'Prupe.1G221200' => 'ppe', 'Prupe.3G289000' => 'ppe', 'Prupe.5G147000' => 'ppe', 'Prupe.6G157300' => 'ppe', 'Prupe.7G163400' => 'ppe', 'Psat0s2177g0040' => 'psa', 'Psat3g174760' => 'psa', 'Psat3g192160' => 'psa', 'Psat4g058520' => 'psa', 'Psat4g096840' => 'psa', 'Psat7g037320' => 'psa', 'PSO017G1274' => 'pso', 'PSO017G5166' => 'pso', 'PSO063G4558' => 'pso', 'PSO170G4458' => 'pso', 'PSO170G5005' => 'pso', 'PSO210G6156' => 'pso', 'PSO210G6635' => 'pso', 'PSO210G7397' => 'pso', 'PSO210G7700' => 'pso', 'PSO455G0035' => 'pso', 'PSO455G0180' => 'pso', 'PSO478G4515' => 'pso', 'PSO832G1305' => 'pso', 'PSO832G3489' => 'pso', 'QL02p075247' => 'qlo', 'QL03p051148' => 'qlo', 'QL05p010313' => 'qlo', 'QL06p034627' => 'qlo', 'QL10p001889' => 'qlo', 'QL10p010846' => 'qlo', 'RcHm_v2.0_Chr1g0350621' => 'rch', 'RcHm_v2.0_Chr1g0350641' => 'rch', 'RcHm_v2.0_Chr2g0092891' => 'rch', 'RcHm_v2.0_Chr2g0100251' => 'rch', 'RcHm_v2.0_Chr2g0158661' => 'rch', 'RcHm_v2.0_Chr2g0172741' => 'rch', 'RcHm_v2.0_Chr4g0429571' => 'rch', 'RcHm_v2.0_Chr5g0042471' => 'rch', 'RcHm_v2.0_Chr7g0189451' => 'rch', 'Rhsim08G0052000' => 'rsi', 'Rhsim08G0174400' => 'rsi', 'Rhsim08G0193200' => 'rsi', 'Rhsim10G0214800' => 'rsi', 'Rhsim10G0214900' => 'rsi', 'Rhsim10G0215000' => 'rsi', 'Rhsim12G0022900' => 'rsi', 'Rhsim12G0177500' => 'rsi', 'Rhsim12G0177700' => 'rsi', 'Sabra03G0122600' => 'sbr', 'Sabra05G0097400' => 'sbr', 'Sabra12G0064100' => 'sbr', 'Sabra15G0121300' => 'sbr', 'SalBow2G0642' => 'sbo', 'SalBow5G2667' => 'sbo', 'SalBow5G4873' => 'sbo', 'SalBow8G2395' => 'sbo', 'Sc03g0003290' => 'sci', 'Sc10g0010130' => 'sci', 'Sc22g0003650' => 'sci', 'Sed0001603' => 'sed', 'Sed0004259' => 'sed', 'Sed0006789' => 'sed', 'Sed0011838' => 'sed', 'Sed0012964' => 'sed', 'Sed0016383' => 'sed', 'Sed0019010' => 'sed', 'Sed0020188' => 'sed', 'SEGI_04702' => 'sgi', 'SEGI_17231' => 'sgi', 'SEGI_18877' => 'sgi', 'SEGI_25196' => 'sgi', 'SEGI_25515' => 'sgi', 'SEGI_28445' => 'sgi', 'SEGI_37452' => 'sgi', 'SGA_v2.0_scaffold188G40336' => 'sas', 'SGA_v2.0_scaffold228G43247' => 'sas', 'SGA_v2.0_scaffold280G46853' => 'sas', 'SGA_v2.0_scaffold34G13808' => 'sas', 'SGA_v2.0_scaffold40G15576' => 'sas', 'SGA_v2.0_scaffold611G53188' => 'sas', 'SGA_v2.0_scaffold78G25461' => 'sas', 'SGA_v2.0_scaffold90G27888' => 'sas', 'SHI08601' => 'shi', 'SHI08606' => 'shi', 'SHI17117' => 'shi', 'SHI17119' => 'shi', 'SMO118G0201' => 'smo', 'SMO169G0247' => 'smo', 'SMO176G0006' => 'smo', 'SMO176G0015' => 'smo', 'SMO202G0006' => 'smo', 'SMO240G0050' => 'smo', 'SMO286G0009' => 'smo', 'SMO338G0033' => 'smo', 'SMO356G0533' => 'smo', 'SMO364G0382' => 'smo', 'SMO367G0166' => 'smo', 'SMO367G1098' => 'smo', 'Solyc01g009920.3' => 'sly', 'Solyc01g099300.3' => 'sly', 'Solyc02g084700.3' => 'sly', 'Solyc03g097520.3' => 'sly', 'Solyc06g071580.3' => 'sly', 'Solyc10g081760.3' => 'sly', 'Sopen01g005480' => 'spe', 'Sopen01g042850' => 'spe', 'Sopen02g029370' => 'spe', 'Sopen03g028280' => 'spe', 'Sopen06g027870' => 'spe', 'Sopen10g032270' => 'spe', 'Sp5g18180' => 'spa', 'Sp6g12880' => 'spa', 'Sp6g30850' => 'spa', 'Sp7g22960' => 'spa', 'Sp7g34010' => 'spa', 'SpUn1326_0010' => 'spa', 'TAR371G0242' => 'tar', 'TAR622G0638' => 'tar', 'TAR628G1548' => 'tar', 'TAR629G1079' => 'tar', 'TAR629G3413' => 'tar', 'THA.LOC104804249' => 'tha', 'THA.LOC104808315' => 'tha', 'THA.LOC104809238' => 'tha', 'THA.LOC104825484' => 'tha', 'Thecc.01G025500' => 'tca', 'Thecc.03G015800' => 'tca', 'Thecc.03G018000' => 'tca', 'Thecc.03G134800' => 'tca', 'Thecc.04G014700' => 'tca', 'Thhalv10006991m.g' => 'esa', 'Thhalv10012707m.g' => 'esa', 'Thhalv10015739m.g' => 'esa', 'Thhalv10024553m.g' => 'esa', 'Thhalv10024673m.g' => 'esa', 'Thhalv10029187m.g' => 'esa', 'TPR.G12971' => 'tpr', 'TPR.G29396' => 'tpr', 'TPR.G33376' => 'tpr', 'TPR.G35508' => 'tpr', 'TPR.G35516' => 'tpr', 'TPR.G37317' => 'tpr', 'TPR.G37389' => 'tpr', 'TPR.G37523' => 'tpr', 'TPR.G559' => 'tpr', 'TWI14G0070' => 'twi', 'TWI14G0729' => 'twi', 'TWI18G0596' => 'twi', 'TWI39G0780' => 'twi', 'TWI39G0850' => 'twi', 'TWI73G1052' => 'twi', 'unitig_52.g17485' => 'ugi', 'unitig_61.g26355' => 'ugi', 'vmacro01040' => 'vma', 'vmacro16731' => 'vma', 'vmacro18270' => 'vma', 'vmacro19142' => 'vma', 'vmacro19407' => 'vma', 'vmacro19408' => 'vma', 'vmacro21899' => 'vma', 'vmacro21900' => 'vma', 'vmacro21901' => 'vma', 'VMungo0251G0490' => 'vmu', 'VMungo0251G1748' => 'vmu', 'VMungo1309G0421' => 'vmu', 'Zm00001eb086500' => 'zma', 'Zm00001eb150680' => 'zma', 'Zm00001eb162330' => 'zma', 'Zm00001eb203130' => 'zma', 'Zm00001eb369480' => 'zma', 'Zm00001eb382340' => 'zma', 'Zm00001eb416360' => 'zma' ) $gf_id = 'HOM05D000902' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000902' ) $data_identifier = 'HOM05D000902' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 13, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 10, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 6, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 9, 'hma' => (int) 12, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 4, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 6, 'ppa' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 6, 'rch' => (int) 9, 'rsi' => (int) 9, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 12, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 3, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416360' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000902', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '663', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02470' => 'bna', 'A01p16260' => 'bna', 'A02p01680' => 'bna', 'A03p16600' => 'bna', 'A03p55660' => 'bna', 'A03p64160' => 'bna', 'A03p64170' => 'bna', 'A08p31900' => 'bna', 'A09p59530' => 'bna', 'A10p08230' => 'bna', 'A10p25090' => 'bna', 'Aa31LG3G7100' => 'aar', 'Aa31LG3G7110' => 'aar', 'Aa31LG6G13160' => 'aar', 'Aa31LG7G10770' => 'aar', 'Aa31LG7G3830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2723' => 'aag', 'Actinidia08045' => 'ach', 'Actinidia08888' => 'ach', 'Actinidia18333' => 'ach', 'Actinidia19334' => 'ach', 'Actinidia25552' => 'ach', 'Actinidia26089' => 'ach', 'Actinidia30615' => 'ach', 'Actinidia30616' => 'ach', 'Actinidia33083' => 'ach', 'Actinidia35762' => 'ach', 'Ah.02g110620' => 'amhyb', 'Ah.11g046390' => 'amhyb', 'AL1G31670' => 'aly', 'AL6G23730' => 'aly', 'AL7G14740' => 'aly', 'AL7G14750' => 'aly', 'AL7G14760' => 'aly', 'AL7G28220' => 'aly', 'AL8G24940' => 'aly', 'Aqoxy3G01665' => 'aox', 'Aqoxy3G02853' => 'aox', 'Aqoxy5G01513' => 'aox', 'Aqoxy5G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8SKA4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ75LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKDA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0LJZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7REX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZP4YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWX7I5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2QKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS0L9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPCD8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q161UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC7XCF' => 'arhy', 'AT1G19100' => 'ath', 'AT4G24970' => 'ath', 'AT4G36270' => 'ath', 'AT4G36280' => 'ath', 'AT4G36290' => 'ath', 'AT5G13130' => 'ath', 'AT5G50780' => 'ath', 'ATR0582G266' => 'atr', 'ATR0661G195' => 'atr', 'ATR1152G031' => 'atr', 'Atru.chr11.2382' => 'acertr', 'Atru.chr12.2337' => 'acertr', 'Atru.chr3.744' => 'acertr', 'Atru.chr6.1870' => 'acertr', 'Atru.chr9.2515' => 'acertr', 'AUR62004120' => 'cqu', 'AUR62005667' => 'cqu', 'AUR62007634' => 'cqu', 'AUR62008186' => 'cqu', 'AUR62008187' => 'cqu', 'AUR62008188' => 'cqu', 'AUR62027954' => 'cqu', 'AUR62028766' => 'cqu', 'AUR62028767' => 'cqu', 'AUR62028768' => 'cqu', 'AUR62028886' => 'cqu', 'AUR62029563' => 'cqu', 'AUR62038832' => 'cqu', 'BcaB01g04149' => 'bca', 'BcaB03g12940' => 'bca', 'BcaB03g13090' => 'bca', 'BcaB03g14466' => 'bca', 'BcaB05g24035' => 'bca', 'BcaC01g06050' => 'bca', 'BcaC04g19148' => 'bca', 'BcaC04g20761' => 'bca', 'BcaC06g32845' => 'bca', 'BcaC07g41274' => 'bca', 'BcaC09g50827' => 'bca', 'BcaNung00741' => 'bca', 'BcaNung00742' => 'bca', 'BcaNung01859' => 'bca', 'BcaNung03985' => 'bca', 'BcaNung03989' => 'bca', 'BcaNung05661' => 'bca', 'BolC1t00257H' => 'bol', 'BolC1t01956H' => 'bol', 'BolC2t06534H' => 'bol', 'BolC3t14334H' => 'bol', 'BolC5t30451H' => 'bol', 'BolC7t45880H' => 'bol', 'BolC7t46586H' => 'bol', 'BolC8t49301H' => 'bol', 'BolC8t51837H' => 'bol', 'BolC9t56822H' => 'bol', 'BolC9t59235H' => 'bol', 'BraA01t00234Z' => 'bra', 'BraA01t01563Z' => 'bra', 'BraA02t05147Z' => 'bra', 'BraA03t10947Z' => 'bra', 'BraA03t14633Z' => 'bra', 'BraA08t35112Z' => 'bra', 'BraA09t41330Z' => 'bra', 'BraA10t44570Z' => 'bra', 'C01p02670' => 'bna', 'C01p20260' => 'bna', 'C02p05890' => 'bna', 'C03p19530' => 'bna', 'C05p17470' => 'bna', 'C07p53900' => 'bna', 'C07p61630' => 'bna', 'C08p16800' => 'bna', 'C08p42810' => 'bna', 'C09p39480' => 'bna', 'C09p63980' => 'bna', 'CAN.G1001.7' => 'can', 'CAN.G1034.55' => 'can', 'CAN.G143.7' => 'can', 'CAN.G3340.1' => 'can', 'CAN.G358.19' => 'can', 'CAN.G373.2' => 'can', 'CAN.G674.16' => 'can', 'CAN.G674.17' => 'can', 'CAN.G674.18' => 'can', 'CAN.G732.2' => 'can', 'CAN.G732.3' => 'can', 'CAN.G993.39' => 'can', 'CANSAT01G2052' => 'cansat', 'CANSAT80G0070' => 'cansat', 'CANSAT80G0483' => 'cansat', 'CANSAT80G0625' => 'cansat', 'CARHR019690' => 'chi', 'CARHR080280' => 'chi', 'CARHR152750' => 'chi', 'CARHR152760' => 'chi', 'CARHR152770' => 'chi', 'CARHR200340' => 'chi', 'CARHR232370' => 'chi', 'CARHR244670' => 'chi', 'CARHR244680' => 'chi', 'CARHR257520' => 'chi', 'Carub.0001s1872' => 'cru', 'Carub.0006s1130' => 'cru', 'Carub.0007s0396' => 'cru', 'Carub.0007s0397' => 'cru', 'Carub.0007s1608' => 'cru', 'Carub.0008s1068' => 'cru', 'Carub.0008s1077' => 'cru', 'Ca_16158_v3' => 'car', 'Ca_17571_v3' => 'car', 'Ca_21936_v3' => 'car', 'Ca_22350_v3' => 'car', 'CBR_g22445' => 'cbr', 'CBR_g26290' => 'cbr', 'Cc04_g09610' => 'ccan', 'Cc04_g12280' => 'ccan', 'Cc07_g10230' => 'ccan', 'CDE02G0093' => 'cde', 'CDE02G0701' => 'cde', 'CDE04G1050' => 'cde', 'CDE05G1833' => 'cde', 'CDE05G3058' => 'cde', 'CDE05G3380' => 'cde', 'CDE06G0536' => 'cde', 'Cfa006923' => 'cfa', 'Cfa009402' => 'cfa', 'Cfa018751' => 'cfa', 'Cfa019164' => 'cfa', 'Cfa022935' => 'cfa', 'Ciclev10019081m.g' => 'ccl', 'Ciclev10025076m.g' => 'ccl', 'Ciclev10030712m.g' => 'ccl', 'Ciclev10033760m.g' => 'ccl', 'CiPaw.05G105600' => 'cil', 'CiPaw.08G136700' => 'cil', 'CiPaw.11G003900' => 'cil', 'CiPaw.11G023700' => 'cil', 'CiPaw.12G003700' => 'cil', 'ClCG06G017100' => 'cla', 'ClCG06G018110' => 'cla', 'ClCG07G008800' => 'cla', 'ClCG07G015330' => 'cla', 'COL.COLO4_13698' => 'col', 'COL.COLO4_16659' => 'col', 'COL.COLO4_21986' => 'col', 'COL.COLO4_24049' => 'col', 'COL.COLO4_29061' => 'col', 'COL.COLO4_29075' => 'col', 'COL.COLO4_30094' => 'col', 'Cpa.g.c33689' => 'cpa', 'Cpa.g.sc108.39' => 'cpa', 'Cpa.g.sc108.41' => 'cpa', 'Cpa.g.sc1163.1' => 'cpa', 'Cpa.g.sc4.155' => 'cpa', 'Cpa.g.sc6.194' => 'cpa', 'CsaV3_1G000340' => 'csa', 'CsaV3_1G001400' => 'csa', 'CsaV3_4G002220' => 'csa', 'CsaV3_4G005370' => 'csa', 'CSS0007487' => 'camsi', 'CSS0008066' => 'camsi', 'CSS0009120' => 'camsi', 'CSS0015512' => 'camsi', 'CSS0022409' => 'camsi', 'CSS0025358' => 'camsi', 'CSS0044547' => 'camsi', 'DCAR_013057' => 'dca', 'DCAR_015058' => 'dca', 'DCAR_016027' => 'dca', 'DCAR_017327' => 'dca', 'DCAR_020743' => 'dca', 'DCAR_026157' => 'dca', 'DCAR_032339' => 'dca', 'DCAR_032340' => 'dca', 'Dinv11200' => 'din', 'Dinv11201' => 'din', 'Dinv20631' => 'din', 'Dinv23182' => 'din', 'Dinv33466' => 'din', 'Dinv33583' => 'din', 'Dinv38565' => 'din', 'Duzib068G0200' => 'dzi', 'Duzib147G0132' => 'dzi', 'Duzib147G0635' => 'dzi', 'Duzib205G1670' => 'dzi', 'Duzib251G0606' => 'dzi', 'ECA232G3336' => 'eca', 'ECA232G3763' => 'eca', 'ECA232G4845' => 'eca', 'ECA234G1607' => 'eca', 'ECA246G0932' => 'eca', 'ECA247G0781' => 'eca', 'ECA247G1932' => 'eca', 'ECA247G2079' => 'eca', 'ECA247G3338' => 'eca', 'ECA247G4115' => 'eca', 'EL10Ac3g06552' => 'bvu', 'EL10Ac5g10721' => 'bvu', 'EL10Ac5g10722' => 'bvu', 'EL10Ac5g10723' => 'bvu', 'EL10Ac5g11361' => 'bvu', 'EL10Ac6g13553' => 'bvu', 'EL10As8g23872' => 'bvu', 'Eucgr.B00250' => 'egr', 'Eucgr.B00251' => 'egr', 'Eucgr.B03533' => 'egr', 'Eucgr.I02381' => 'egr', 'Eucgr.K02700' => 'egr', 'FAN02G0174' => 'fan', 'FAN02G3146' => 'fan', 'FAN04G1672' => 'fan', 'FAN04G2273' => 'fan', 'FAN05G2791' => 'fan', 'FAN05G4035' => 'fan', 'FAN07G0834' => 'fan', 'FAN08G1198' => 'fan', 'FAN09G4182' => 'fan', 'FAN12G0496' => 'fan', 'FAN13G1027' => 'fan', 'FAN13G2951' => 'fan', 'FAN14G0705' => 'fan', 'FAN14G0720' => 'fan', 'FAN17G0201' => 'fan', 'FAN17G2665' => 'fan', 'FAN18G1456' => 'fan', 'FAN18G1525' => 'fan', 'FAN18G3500' => 'fan', 'FAN28G2670' => 'fan', 'FvH4_1g12391' => 'fve', 'FvH4_4g23220' => 'fve', 'FvH4_5g08810' => 'fve', 'FvH4_5g28960' => 'fve', 'FvH4_6g42820' => 'fve', 'FvH4_6g51110' => 'fve', 'Glyma.02G051802' => 'gma', 'Glyma.04G185300' => 'gma', 'Glyma.05G202900' => 'gma', 'Glyma.08G010300' => 'gma', 'Glyma.16G131900' => 'gma', 'Glyma.17G087900' => 'gma', 'Gohir.A07G048600' => 'ghi', 'Gohir.A11G179000' => 'ghi', 'Gohir.A12G140900' => 'ghi', 'Gohir.A12G140950' => 'ghi', 'Gohir.A12G191700' => 'ghi', 'Gohir.A13G086300' => 'ghi', 'Gohir.D07G052900' => 'ghi', 'Gohir.D11G186600' => 'ghi', 'Gohir.D12G145575' => 'ghi', 'Gohir.D12G145650' => 'ghi', 'Gohir.D12G145725' => 'ghi', 'Gohir.D12G194050' => 'ghi', 'Gohir.D13G091800' => 'ghi', 'Gorai.001G055900' => 'gra', 'Gorai.007G198400' => 'gra', 'Gorai.008G157000' => 'gra', 'Gorai.008G157100' => 'gra', 'Gorai.008G208700' => 'gra', 'Gorai.010G138700' => 'gra', 'GSVIVG01000977001' => 'vvi', 'GSVIVG01007708001' => 'vvi', 'GSVIVG01008587001' => 'vvi', 'GSVIVG01018849001' => 'vvi', 'GSVIVG01032432001' => 'vvi', 'HanXRQChr02g0034131' => 'han', 'HanXRQChr02g0035981' => 'han', 'HanXRQChr02g0035991' => 'han', 'HanXRQChr05g0155611' => 'han', 'HanXRQChr05g0155621' => 'han', 'HanXRQChr08g0236501' => 'han', 'HanXRQChr09g0261321' => 'han', 'HanXRQChr09g0272081' => 'han', 'HanXRQChr10g0310741' => 'han', 'HanXRQChr11g0325591' => 'han', 'HanXRQChr12g0385691' => 'han', 'HanXRQChr13g0387801' => 'han', 'HanXRQChr15g0463011' => 'han', 'Haze_03826' => 'cav', 'Haze_03827' => 'cav', 'Haze_07183' => 'cav', 'Haze_07537' => 'cav', 'Haze_07539' => 'cav', 'Haze_12461' => 'cav', 'Haze_16115' => 'cav', 'Haze_16808' => 'cav', 'Haze_18531' => 'cav', 'Hma1.2p1_0046F.1_g026700' => 'hma', 'Hma1.2p1_0046F.1_g026710' => 'hma', 'Hma1.2p1_0168F.1_g074340' => 'hma', 'Hma1.2p1_0266F.1_g107030' => 'hma', 'Hma1.2p1_0266F.1_g107060' => 'hma', 'Hma1.2p1_0275F.1_g110510' => 'hma', 'Hma1.2p1_0592F.1_g185490' => 'hma', 'Hma1.2p1_0592F.1_g185500' => 'hma', 'Hma1.2p1_0592F.1_g185510' => 'hma', 'Hma1.2p1_0592F.1_g185520' => 'hma', 'Hma1.2p1_0592F.1_g185530' => 'hma', 'Hma1.2p1_0818F.1_g223450' => 'hma', 'HPP92_009708' => 'vpl', 'HPP92_009793' => 'vpl', 'HPP92_009796' => 'vpl', 'HPP92_009797' => 'vpl', 'HPP92_014940' => 'vpl', 'HPP92_014988' => 'vpl', 'Hund02463' => 'sun', 'Hund02760' => 'sun', 'Hund05071' => 'sun', 'Hund10108' => 'sun', 'Hund11204' => 'sun', 'Hund14016' => 'sun', 'Hund16464' => 'sun', 'Lalb_Chr09g0333391' => 'lal', 'Lalb_Chr11g0070461' => 'lal', 'Lalb_Chr12g0201671' => 'lal', 'Lalb_Chr13g0297161' => 'lal', 'Lj1g0002823' => 'lja', 'Lj3C1074T6' => 'lonja', 'Lj4A212T28' => 'lonja', 'Lj4g0005516' => 'lja', 'Lj4g0013705' => 'lja', 'Lj4g0027865' => 'lja', 'Lj5C92G16' => 'lonja', 'Lj5C92T12' => 'lonja', 'Lj7C596T3' => 'lonja', 'Lj9A446G59' => 'lonja', 'Lj9A482G21' => 'lonja', 'Lsat_1_v5_gn_1_28261' => 'lsa', 'Lsat_1_v5_gn_1_28281' => 'lsa', 'Lsat_1_v5_gn_1_32721' => 'lsa', 'Lsat_1_v5_gn_4_151760' => 'lsa', 'Lsat_1_v5_gn_4_2120' => 'lsa', 'Lsat_1_v5_gn_4_75761' => 'lsa', 'Lsat_1_v5_gn_5_10920' => 'lsa', 'Manes.02G099900' => 'mes', 'Manes.11G096200' => 'mes', 'Manes.12G007200' => 'mes', 'Manes.14G048300' => 'mes', 'Manes.17G114700' => 'mes', 'Mapoly0002s0070' => 'mpo', 'Mapoly0029s0099' => 'mpo', 'MBI07_g24742_MAGBIO' => 'mbi', 'MBI10_g27988_MAGBIO' => 'mbi', 'MBI11_g13057_MAGBIO' => 'mbi', 'MD02G1137200' => 'mdo', 'MD06G1137200' => 'mdo', 'MD07G1122300' => 'mdo', 'MD09G1078200' => 'mdo', 'MD13G1123700' => 'mdo', 'MD14G1151900' => 'mdo', 'MD17G1030900' => 'mdo', 'MD17G1068200' => 'mdo', 'MD17G1068600' => 'mdo', 'Medtr3g077540' => 'mtr', 'Medtr4g105530' => 'mtr', 'Medtr8g076580' => 'mtr', 'Medtr8g076590' => 'mtr', 'Medtr8g096410' => 'mtr', 'MELO3C016411.2' => 'cme', 'MELO3C017780.2' => 'cme', 'MELO3C022560.2' => 'cme', 'MELO3C026187.2' => 'cme', 'MELO3C026286.2' => 'cme', 'MELO3C032854.2' => 'cme', 'Migut.H02495' => 'egut', 'Migut.I00561' => 'egut', 'Migut.K01015' => 'egut', 'Migut.K01016' => 'egut', 'Migut.L00743' => 'egut', 'Migut.L00744' => 'egut', 'Migut.L00746' => 'egut', 'Migut.L00798' => 'egut', 'Migut.L00799' => 'egut', 'Migut.N02096' => 'egut', 'MSTRG.11259' => 'ama', 'MSTRG.23142' => 'ama', 'MSTRG.2499' => 'ama', 'Nitab4.5_0000003g0730' => 'nta', 'Nitab4.5_0000137g0020' => 'nta', 'Nitab4.5_0000721g0210' => 'nta', 'Nitab4.5_0000723g0050' => 'nta', 'Nitab4.5_0000913g0070' => 'nta', 'Nitab4.5_0001332g0040' => 'nta', 'Nitab4.5_0001771g0050' => 'nta', 'Nitab4.5_0001918g0050' => 'nta', 'Nitab4.5_0002686g0030' => 'nta', 'Nitab4.5_0003156g0020' => 'nta', 'Nitab4.5_0003383g0040' => 'nta', 'Nitab4.5_0003918g0010' => 'nta', 'Nitab4.5_0006760g0010' => 'nta', 'Nn1g05981' => 'nnu', 'Nn1g06288' => 'nnu', 'Nn3g16371' => 'nnu', 'Nn3g16786' => 'nnu', 'Nn4g22232' => 'nnu', 'Oeu005144.1' => 'oeu', 'Oeu005145.1' => 'oeu', 'Oeu011348.1' => 'oeu', 'Oeu016415.1' => 'oeu', 'Oeu023501.1' => 'oeu', 'Oeu044473.1' => 'oeu', 'Oeu048892.2' => 'oeu', 'Os01g0549200' => 'osa', 'Os02g0469300' => 'osa', 'Os04g0311100' => 'osa', 'Os06g0474900' => 'osa', 'Os10g0181700' => 'osa', 'Os11g0454800' => 'osa', 'Peaxi162Scf00037g00714' => 'pax', 'Peaxi162Scf00084g01217' => 'pax', 'Peaxi162Scf00257g00217' => 'pax', 'Peaxi162Scf00516g00215' => 'pax', 'Peaxi162Scf00689g00123' => 'pax', 'PGR044G2719' => 'pgr', 'PGR083G1360' => 'pgr', 'PGR102G2849' => 'pgr', 'PGR119G2534' => 'pgr', 'PGSC0003DMG400003538' => 'stu', 'PGSC0003DMG400028138' => 'stu', 'PGSC0003DMG400031732' => 'stu', 'PGSC0003DMG400038165' => 'stu', 'Phvul.002G284600' => 'pvu', 'Phvul.003G258200' => 'pvu', 'Phvul.009G176500' => 'pvu', 'Potri.003G167201' => 'ptr', 'Potri.005G118400' => 'ptr', 'Potri.012G089000' => 'ptr', 'Potri.012G102800' => 'ptr', 'Potri.015G079400' => 'ptr', 'Potri.015G100900' => 'ptr', 'Pp3c14_9810' => 'ppa', 'Pp3c15_10450' => 'ppa', 'Pp3c20_19150' => 'ppa', 'Pp3c23_12740' => 'ppa', 'Pp3c23_6310' => 'ppa', 'Pp3c24_3720' => 'ppa', 'Pp3c27_2580' => 'ppa', 'Pp3c9_8990' => 'ppa', 'PRCOL_00002854' => 'pco', 'Prupe.1G221200' => 'ppe', 'Prupe.3G289000' => 'ppe', 'Prupe.5G147000' => 'ppe', 'Prupe.6G157300' => 'ppe', 'Prupe.7G163400' => 'ppe', 'Psat0s2177g0040' => 'psa', 'Psat3g174760' => 'psa', 'Psat3g192160' => 'psa', 'Psat4g058520' => 'psa', 'Psat4g096840' => 'psa', 'Psat7g037320' => 'psa', 'PSO017G1274' => 'pso', 'PSO017G5166' => 'pso', 'PSO063G4558' => 'pso', 'PSO170G4458' => 'pso', 'PSO170G5005' => 'pso', 'PSO210G6156' => 'pso', 'PSO210G6635' => 'pso', 'PSO210G7397' => 'pso', 'PSO210G7700' => 'pso', 'PSO455G0035' => 'pso', 'PSO455G0180' => 'pso', 'PSO478G4515' => 'pso', 'PSO832G1305' => 'pso', 'PSO832G3489' => 'pso', 'QL02p075247' => 'qlo', 'QL03p051148' => 'qlo', 'QL05p010313' => 'qlo', 'QL06p034627' => 'qlo', 'QL10p001889' => 'qlo', 'QL10p010846' => 'qlo', 'RcHm_v2.0_Chr1g0350621' => 'rch', 'RcHm_v2.0_Chr1g0350641' => 'rch', 'RcHm_v2.0_Chr2g0092891' => 'rch', 'RcHm_v2.0_Chr2g0100251' => 'rch', 'RcHm_v2.0_Chr2g0158661' => 'rch', 'RcHm_v2.0_Chr2g0172741' => 'rch', 'RcHm_v2.0_Chr4g0429571' => 'rch', 'RcHm_v2.0_Chr5g0042471' => 'rch', 'RcHm_v2.0_Chr7g0189451' => 'rch', 'Rhsim08G0052000' => 'rsi', 'Rhsim08G0174400' => 'rsi', 'Rhsim08G0193200' => 'rsi', 'Rhsim10G0214800' => 'rsi', 'Rhsim10G0214900' => 'rsi', 'Rhsim10G0215000' => 'rsi', 'Rhsim12G0022900' => 'rsi', 'Rhsim12G0177500' => 'rsi', 'Rhsim12G0177700' => 'rsi', 'Sabra03G0122600' => 'sbr', 'Sabra05G0097400' => 'sbr', 'Sabra12G0064100' => 'sbr', 'Sabra15G0121300' => 'sbr', 'SalBow2G0642' => 'sbo', 'SalBow5G2667' => 'sbo', 'SalBow5G4873' => 'sbo', 'SalBow8G2395' => 'sbo', 'Sc03g0003290' => 'sci', 'Sc10g0010130' => 'sci', 'Sc22g0003650' => 'sci', 'Sed0001603' => 'sed', 'Sed0004259' => 'sed', 'Sed0006789' => 'sed', 'Sed0011838' => 'sed', 'Sed0012964' => 'sed', 'Sed0016383' => 'sed', 'Sed0019010' => 'sed', 'Sed0020188' => 'sed', 'SEGI_04702' => 'sgi', 'SEGI_17231' => 'sgi', 'SEGI_18877' => 'sgi', 'SEGI_25196' => 'sgi', 'SEGI_25515' => 'sgi', 'SEGI_28445' => 'sgi', 'SEGI_37452' => 'sgi', 'SGA_v2.0_scaffold188G40336' => 'sas', 'SGA_v2.0_scaffold228G43247' => 'sas', 'SGA_v2.0_scaffold280G46853' => 'sas', 'SGA_v2.0_scaffold34G13808' => 'sas', 'SGA_v2.0_scaffold40G15576' => 'sas', 'SGA_v2.0_scaffold611G53188' => 'sas', 'SGA_v2.0_scaffold78G25461' => 'sas', 'SGA_v2.0_scaffold90G27888' => 'sas', 'SHI08601' => 'shi', 'SHI08606' => 'shi', 'SHI17117' => 'shi', 'SHI17119' => 'shi', 'SMO118G0201' => 'smo', 'SMO169G0247' => 'smo', 'SMO176G0006' => 'smo', 'SMO176G0015' => 'smo', 'SMO202G0006' => 'smo', 'SMO240G0050' => 'smo', 'SMO286G0009' => 'smo', 'SMO338G0033' => 'smo', 'SMO356G0533' => 'smo', 'SMO364G0382' => 'smo', 'SMO367G0166' => 'smo', 'SMO367G1098' => 'smo', 'Solyc01g009920.3' => 'sly', 'Solyc01g099300.3' => 'sly', 'Solyc02g084700.3' => 'sly', 'Solyc03g097520.3' => 'sly', 'Solyc06g071580.3' => 'sly', 'Solyc10g081760.3' => 'sly', 'Sopen01g005480' => 'spe', 'Sopen01g042850' => 'spe', 'Sopen02g029370' => 'spe', 'Sopen03g028280' => 'spe', 'Sopen06g027870' => 'spe', 'Sopen10g032270' => 'spe', 'Sp5g18180' => 'spa', 'Sp6g12880' => 'spa', 'Sp6g30850' => 'spa', 'Sp7g22960' => 'spa', 'Sp7g34010' => 'spa', 'SpUn1326_0010' => 'spa', 'TAR371G0242' => 'tar', 'TAR622G0638' => 'tar', 'TAR628G1548' => 'tar', 'TAR629G1079' => 'tar', 'TAR629G3413' => 'tar', 'THA.LOC104804249' => 'tha', 'THA.LOC104808315' => 'tha', 'THA.LOC104809238' => 'tha', 'THA.LOC104825484' => 'tha', 'Thecc.01G025500' => 'tca', 'Thecc.03G015800' => 'tca', 'Thecc.03G018000' => 'tca', 'Thecc.03G134800' => 'tca', 'Thecc.04G014700' => 'tca', 'Thhalv10006991m.g' => 'esa', 'Thhalv10012707m.g' => 'esa', 'Thhalv10015739m.g' => 'esa', 'Thhalv10024553m.g' => 'esa', 'Thhalv10024673m.g' => 'esa', 'Thhalv10029187m.g' => 'esa', 'TPR.G12971' => 'tpr', 'TPR.G29396' => 'tpr', 'TPR.G33376' => 'tpr', 'TPR.G35508' => 'tpr', 'TPR.G35516' => 'tpr', 'TPR.G37317' => 'tpr', 'TPR.G37389' => 'tpr', 'TPR.G37523' => 'tpr', 'TPR.G559' => 'tpr', 'TWI14G0070' => 'twi', 'TWI14G0729' => 'twi', 'TWI18G0596' => 'twi', 'TWI39G0780' => 'twi', 'TWI39G0850' => 'twi', 'TWI73G1052' => 'twi', 'unitig_52.g17485' => 'ugi', 'unitig_61.g26355' => 'ugi', 'vmacro01040' => 'vma', 'vmacro16731' => 'vma', 'vmacro18270' => 'vma', 'vmacro19142' => 'vma', 'vmacro19407' => 'vma', 'vmacro19408' => 'vma', 'vmacro21899' => 'vma', 'vmacro21900' => 'vma', 'vmacro21901' => 'vma', 'VMungo0251G0490' => 'vmu', 'VMungo0251G1748' => 'vmu', 'VMungo1309G0421' => 'vmu', 'Zm00001eb086500' => 'zma', 'Zm00001eb150680' => 'zma', 'Zm00001eb162330' => 'zma', 'Zm00001eb203130' => 'zma', 'Zm00001eb369480' => 'zma', 'Zm00001eb382340' => 'zma', 'Zm00001eb416360' => 'zma' ), 'gf_id' => 'HOM05D000902', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000902' ), 'data_identifier' => 'HOM05D000902', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000902', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '663', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02470' => 'bna', 'A01p16260' => 'bna', 'A02p01680' => 'bna', 'A03p16600' => 'bna', 'A03p55660' => 'bna', 'A03p64160' => 'bna', 'A03p64170' => 'bna', 'A08p31900' => 'bna', 'A09p59530' => 'bna', 'A10p08230' => 'bna', 'A10p25090' => 'bna', 'Aa31LG3G7100' => 'aar', 'Aa31LG3G7110' => 'aar', 'Aa31LG6G13160' => 'aar', 'Aa31LG7G10770' => 'aar', 'Aa31LG7G3830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2723' => 'aag', 'Actinidia08045' => 'ach', 'Actinidia08888' => 'ach', 'Actinidia18333' => 'ach', 'Actinidia19334' => 'ach', 'Actinidia25552' => 'ach', 'Actinidia26089' => 'ach', 'Actinidia30615' => 'ach', 'Actinidia30616' => 'ach', 'Actinidia33083' => 'ach', 'Actinidia35762' => 'ach', 'Ah.02g110620' => 'amhyb', 'Ah.11g046390' => 'amhyb', 'AL1G31670' => 'aly', 'AL6G23730' => 'aly', 'AL7G14740' => 'aly', 'AL7G14750' => 'aly', 'AL7G14760' => 'aly', 'AL7G28220' => 'aly', 'AL8G24940' => 'aly', 'Aqoxy3G01665' => 'aox', 'Aqoxy3G02853' => 'aox', 'Aqoxy5G01513' => 'aox', 'Aqoxy5G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8SKA4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ75LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKDA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0LJZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7REX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZP4YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWX7I5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2QKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS0L9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPCD8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q161UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC7XCF' => 'arhy', 'AT1G19100' => 'ath', 'AT4G24970' => 'ath', 'AT4G36270' => 'ath', 'AT4G36280' => 'ath', 'AT4G36290' => 'ath', 'AT5G13130' => 'ath', 'AT5G50780' => 'ath', 'ATR0582G266' => 'atr', 'ATR0661G195' => 'atr', 'ATR1152G031' => 'atr', 'Atru.chr11.2382' => 'acertr', 'Atru.chr12.2337' => 'acertr', 'Atru.chr3.744' => 'acertr', 'Atru.chr6.1870' => 'acertr', 'Atru.chr9.2515' => 'acertr', 'AUR62004120' => 'cqu', 'AUR62005667' => 'cqu', 'AUR62007634' => 'cqu', 'AUR62008186' => 'cqu', 'AUR62008187' => 'cqu', 'AUR62008188' => 'cqu', 'AUR62027954' => 'cqu', 'AUR62028766' => 'cqu', 'AUR62028767' => 'cqu', 'AUR62028768' => 'cqu', 'AUR62028886' => 'cqu', 'AUR62029563' => 'cqu', 'AUR62038832' => 'cqu', 'BcaB01g04149' => 'bca', 'BcaB03g12940' => 'bca', 'BcaB03g13090' => 'bca', 'BcaB03g14466' => 'bca', 'BcaB05g24035' => 'bca', 'BcaC01g06050' => 'bca', 'BcaC04g19148' => 'bca', 'BcaC04g20761' => 'bca', 'BcaC06g32845' => 'bca', 'BcaC07g41274' => 'bca', 'BcaC09g50827' => 'bca', 'BcaNung00741' => 'bca', 'BcaNung00742' => 'bca', 'BcaNung01859' => 'bca', 'BcaNung03985' => 'bca', 'BcaNung03989' => 'bca', 'BcaNung05661' => 'bca', 'BolC1t00257H' => 'bol', 'BolC1t01956H' => 'bol', 'BolC2t06534H' => 'bol', 'BolC3t14334H' => 'bol', 'BolC5t30451H' => 'bol', 'BolC7t45880H' => 'bol', 'BolC7t46586H' => 'bol', 'BolC8t49301H' => 'bol', 'BolC8t51837H' => 'bol', 'BolC9t56822H' => 'bol', 'BolC9t59235H' => 'bol', 'BraA01t00234Z' => 'bra', 'BraA01t01563Z' => 'bra', 'BraA02t05147Z' => 'bra', 'BraA03t10947Z' => 'bra', 'BraA03t14633Z' => 'bra', 'BraA08t35112Z' => 'bra', 'BraA09t41330Z' => 'bra', 'BraA10t44570Z' => 'bra', 'C01p02670' => 'bna', 'C01p20260' => 'bna', 'C02p05890' => 'bna', 'C03p19530' => 'bna', 'C05p17470' => 'bna', 'C07p53900' => 'bna', 'C07p61630' => 'bna', 'C08p16800' => 'bna', 'C08p42810' => 'bna', 'C09p39480' => 'bna', 'C09p63980' => 'bna', 'CAN.G1001.7' => 'can', 'CAN.G1034.55' => 'can', 'CAN.G143.7' => 'can', 'CAN.G3340.1' => 'can', 'CAN.G358.19' => 'can', 'CAN.G373.2' => 'can', 'CAN.G674.16' => 'can', 'CAN.G674.17' => 'can', 'CAN.G674.18' => 'can', 'CAN.G732.2' => 'can', 'CAN.G732.3' => 'can', 'CAN.G993.39' => 'can', 'CANSAT01G2052' => 'cansat', 'CANSAT80G0070' => 'cansat', 'CANSAT80G0483' => 'cansat', 'CANSAT80G0625' => 'cansat', 'CARHR019690' => 'chi', 'CARHR080280' => 'chi', 'CARHR152750' => 'chi', 'CARHR152760' => 'chi', 'CARHR152770' => 'chi', 'CARHR200340' => 'chi', 'CARHR232370' => 'chi', 'CARHR244670' => 'chi', 'CARHR244680' => 'chi', 'CARHR257520' => 'chi', 'Carub.0001s1872' => 'cru', 'Carub.0006s1130' => 'cru', 'Carub.0007s0396' => 'cru', 'Carub.0007s0397' => 'cru', 'Carub.0007s1608' => 'cru', 'Carub.0008s1068' => 'cru', 'Carub.0008s1077' => 'cru', 'Ca_16158_v3' => 'car', 'Ca_17571_v3' => 'car', 'Ca_21936_v3' => 'car', 'Ca_22350_v3' => 'car', 'CBR_g22445' => 'cbr', 'CBR_g26290' => 'cbr', 'Cc04_g09610' => 'ccan', 'Cc04_g12280' => 'ccan', 'Cc07_g10230' => 'ccan', 'CDE02G0093' => 'cde', 'CDE02G0701' => 'cde', 'CDE04G1050' => 'cde', 'CDE05G1833' => 'cde', 'CDE05G3058' => 'cde', 'CDE05G3380' => 'cde', 'CDE06G0536' => 'cde', 'Cfa006923' => 'cfa', 'Cfa009402' => 'cfa', 'Cfa018751' => 'cfa', 'Cfa019164' => 'cfa', 'Cfa022935' => 'cfa', 'Ciclev10019081m.g' => 'ccl', 'Ciclev10025076m.g' => 'ccl', 'Ciclev10030712m.g' => 'ccl', 'Ciclev10033760m.g' => 'ccl', 'CiPaw.05G105600' => 'cil', 'CiPaw.08G136700' => 'cil', 'CiPaw.11G003900' => 'cil', 'CiPaw.11G023700' => 'cil', 'CiPaw.12G003700' => 'cil', 'ClCG06G017100' => 'cla', 'ClCG06G018110' => 'cla', 'ClCG07G008800' => 'cla', 'ClCG07G015330' => 'cla', 'COL.COLO4_13698' => 'col', 'COL.COLO4_16659' => 'col', 'COL.COLO4_21986' => 'col', 'COL.COLO4_24049' => 'col', 'COL.COLO4_29061' => 'col', 'COL.COLO4_29075' => 'col', 'COL.COLO4_30094' => 'col', 'Cpa.g.c33689' => 'cpa', 'Cpa.g.sc108.39' => 'cpa', 'Cpa.g.sc108.41' => 'cpa', 'Cpa.g.sc1163.1' => 'cpa', 'Cpa.g.sc4.155' => 'cpa', 'Cpa.g.sc6.194' => 'cpa', 'CsaV3_1G000340' => 'csa', 'CsaV3_1G001400' => 'csa', 'CsaV3_4G002220' => 'csa', 'CsaV3_4G005370' => 'csa', 'CSS0007487' => 'camsi', 'CSS0008066' => 'camsi', 'CSS0009120' => 'camsi', 'CSS0015512' => 'camsi', 'CSS0022409' => 'camsi', 'CSS0025358' => 'camsi', 'CSS0044547' => 'camsi', 'DCAR_013057' => 'dca', 'DCAR_015058' => 'dca', 'DCAR_016027' => 'dca', 'DCAR_017327' => 'dca', 'DCAR_020743' => 'dca', 'DCAR_026157' => 'dca', 'DCAR_032339' => 'dca', 'DCAR_032340' => 'dca', 'Dinv11200' => 'din', 'Dinv11201' => 'din', 'Dinv20631' => 'din', 'Dinv23182' => 'din', 'Dinv33466' => 'din', 'Dinv33583' => 'din', 'Dinv38565' => 'din', 'Duzib068G0200' => 'dzi', 'Duzib147G0132' => 'dzi', 'Duzib147G0635' => 'dzi', 'Duzib205G1670' => 'dzi', 'Duzib251G0606' => 'dzi', 'ECA232G3336' => 'eca', 'ECA232G3763' => 'eca', 'ECA232G4845' => 'eca', 'ECA234G1607' => 'eca', 'ECA246G0932' => 'eca', 'ECA247G0781' => 'eca', 'ECA247G1932' => 'eca', 'ECA247G2079' => 'eca', 'ECA247G3338' => 'eca', 'ECA247G4115' => 'eca', 'EL10Ac3g06552' => 'bvu', 'EL10Ac5g10721' => 'bvu', 'EL10Ac5g10722' => 'bvu', 'EL10Ac5g10723' => 'bvu', 'EL10Ac5g11361' => 'bvu', 'EL10Ac6g13553' => 'bvu', 'EL10As8g23872' => 'bvu', 'Eucgr.B00250' => 'egr', 'Eucgr.B00251' => 'egr', 'Eucgr.B03533' => 'egr', 'Eucgr.I02381' => 'egr', 'Eucgr.K02700' => 'egr', 'FAN02G0174' => 'fan', 'FAN02G3146' => 'fan', 'FAN04G1672' => 'fan', 'FAN04G2273' => 'fan', 'FAN05G2791' => 'fan', 'FAN05G4035' => 'fan', 'FAN07G0834' => 'fan', 'FAN08G1198' => 'fan', 'FAN09G4182' => 'fan', 'FAN12G0496' => 'fan', 'FAN13G1027' => 'fan', 'FAN13G2951' => 'fan', 'FAN14G0705' => 'fan', 'FAN14G0720' => 'fan', 'FAN17G0201' => 'fan', 'FAN17G2665' => 'fan', 'FAN18G1456' => 'fan', 'FAN18G1525' => 'fan', 'FAN18G3500' => 'fan', 'FAN28G2670' => 'fan', 'FvH4_1g12391' => 'fve', 'FvH4_4g23220' => 'fve', 'FvH4_5g08810' => 'fve', 'FvH4_5g28960' => 'fve', 'FvH4_6g42820' => 'fve', 'FvH4_6g51110' => 'fve', 'Glyma.02G051802' => 'gma', 'Glyma.04G185300' => 'gma', 'Glyma.05G202900' => 'gma', 'Glyma.08G010300' => 'gma', 'Glyma.16G131900' => 'gma', 'Glyma.17G087900' => 'gma', 'Gohir.A07G048600' => 'ghi', 'Gohir.A11G179000' => 'ghi', 'Gohir.A12G140900' => 'ghi', 'Gohir.A12G140950' => 'ghi', 'Gohir.A12G191700' => 'ghi', 'Gohir.A13G086300' => 'ghi', 'Gohir.D07G052900' => 'ghi', 'Gohir.D11G186600' => 'ghi', 'Gohir.D12G145575' => 'ghi', 'Gohir.D12G145650' => 'ghi', 'Gohir.D12G145725' => 'ghi', 'Gohir.D12G194050' => 'ghi', 'Gohir.D13G091800' => 'ghi', 'Gorai.001G055900' => 'gra', 'Gorai.007G198400' => 'gra', 'Gorai.008G157000' => 'gra', 'Gorai.008G157100' => 'gra', 'Gorai.008G208700' => 'gra', 'Gorai.010G138700' => 'gra', 'GSVIVG01000977001' => 'vvi', 'GSVIVG01007708001' => 'vvi', 'GSVIVG01008587001' => 'vvi', 'GSVIVG01018849001' => 'vvi', 'GSVIVG01032432001' => 'vvi', 'HanXRQChr02g0034131' => 'han', 'HanXRQChr02g0035981' => 'han', 'HanXRQChr02g0035991' => 'han', 'HanXRQChr05g0155611' => 'han', 'HanXRQChr05g0155621' => 'han', 'HanXRQChr08g0236501' => 'han', 'HanXRQChr09g0261321' => 'han', 'HanXRQChr09g0272081' => 'han', 'HanXRQChr10g0310741' => 'han', 'HanXRQChr11g0325591' => 'han', 'HanXRQChr12g0385691' => 'han', 'HanXRQChr13g0387801' => 'han', 'HanXRQChr15g0463011' => 'han', 'Haze_03826' => 'cav', 'Haze_03827' => 'cav', 'Haze_07183' => 'cav', 'Haze_07537' => 'cav', 'Haze_07539' => 'cav', 'Haze_12461' => 'cav', 'Haze_16115' => 'cav', 'Haze_16808' => 'cav', 'Haze_18531' => 'cav', 'Hma1.2p1_0046F.1_g026700' => 'hma', 'Hma1.2p1_0046F.1_g026710' => 'hma', 'Hma1.2p1_0168F.1_g074340' => 'hma', 'Hma1.2p1_0266F.1_g107030' => 'hma', 'Hma1.2p1_0266F.1_g107060' => 'hma', 'Hma1.2p1_0275F.1_g110510' => 'hma', 'Hma1.2p1_0592F.1_g185490' => 'hma', 'Hma1.2p1_0592F.1_g185500' => 'hma', 'Hma1.2p1_0592F.1_g185510' => 'hma', 'Hma1.2p1_0592F.1_g185520' => 'hma', 'Hma1.2p1_0592F.1_g185530' => 'hma', 'Hma1.2p1_0818F.1_g223450' => 'hma', 'HPP92_009708' => 'vpl', 'HPP92_009793' => 'vpl', 'HPP92_009796' => 'vpl', 'HPP92_009797' => 'vpl', 'HPP92_014940' => 'vpl', 'HPP92_014988' => 'vpl', 'Hund02463' => 'sun', 'Hund02760' => 'sun', 'Hund05071' => 'sun', 'Hund10108' => 'sun', 'Hund11204' => 'sun', 'Hund14016' => 'sun', 'Hund16464' => 'sun', 'Lalb_Chr09g0333391' => 'lal', 'Lalb_Chr11g0070461' => 'lal', 'Lalb_Chr12g0201671' => 'lal', 'Lalb_Chr13g0297161' => 'lal', 'Lj1g0002823' => 'lja', 'Lj3C1074T6' => 'lonja', 'Lj4A212T28' => 'lonja', 'Lj4g0005516' => 'lja', 'Lj4g0013705' => 'lja', 'Lj4g0027865' => 'lja', 'Lj5C92G16' => 'lonja', 'Lj5C92T12' => 'lonja', 'Lj7C596T3' => 'lonja', 'Lj9A446G59' => 'lonja', 'Lj9A482G21' => 'lonja', 'Lsat_1_v5_gn_1_28261' => 'lsa', 'Lsat_1_v5_gn_1_28281' => 'lsa', 'Lsat_1_v5_gn_1_32721' => 'lsa', 'Lsat_1_v5_gn_4_151760' => 'lsa', 'Lsat_1_v5_gn_4_2120' => 'lsa', 'Lsat_1_v5_gn_4_75761' => 'lsa', 'Lsat_1_v5_gn_5_10920' => 'lsa', 'Manes.02G099900' => 'mes', 'Manes.11G096200' => 'mes', 'Manes.12G007200' => 'mes', 'Manes.14G048300' => 'mes', 'Manes.17G114700' => 'mes', 'Mapoly0002s0070' => 'mpo', 'Mapoly0029s0099' => 'mpo', 'MBI07_g24742_MAGBIO' => 'mbi', 'MBI10_g27988_MAGBIO' => 'mbi', 'MBI11_g13057_MAGBIO' => 'mbi', 'MD02G1137200' => 'mdo', 'MD06G1137200' => 'mdo', 'MD07G1122300' => 'mdo', 'MD09G1078200' => 'mdo', 'MD13G1123700' => 'mdo', 'MD14G1151900' => 'mdo', 'MD17G1030900' => 'mdo', 'MD17G1068200' => 'mdo', 'MD17G1068600' => 'mdo', 'Medtr3g077540' => 'mtr', 'Medtr4g105530' => 'mtr', 'Medtr8g076580' => 'mtr', 'Medtr8g076590' => 'mtr', 'Medtr8g096410' => 'mtr', 'MELO3C016411.2' => 'cme', 'MELO3C017780.2' => 'cme', 'MELO3C022560.2' => 'cme', 'MELO3C026187.2' => 'cme', 'MELO3C026286.2' => 'cme', 'MELO3C032854.2' => 'cme', 'Migut.H02495' => 'egut', 'Migut.I00561' => 'egut', 'Migut.K01015' => 'egut', 'Migut.K01016' => 'egut', 'Migut.L00743' => 'egut', 'Migut.L00744' => 'egut', 'Migut.L00746' => 'egut', 'Migut.L00798' => 'egut', 'Migut.L00799' => 'egut', 'Migut.N02096' => 'egut', 'MSTRG.11259' => 'ama', 'MSTRG.23142' => 'ama', 'MSTRG.2499' => 'ama', 'Nitab4.5_0000003g0730' => 'nta', 'Nitab4.5_0000137g0020' => 'nta', 'Nitab4.5_0000721g0210' => 'nta', 'Nitab4.5_0000723g0050' => 'nta', 'Nitab4.5_0000913g0070' => 'nta', 'Nitab4.5_0001332g0040' => 'nta', 'Nitab4.5_0001771g0050' => 'nta', 'Nitab4.5_0001918g0050' => 'nta', 'Nitab4.5_0002686g0030' => 'nta', 'Nitab4.5_0003156g0020' => 'nta', 'Nitab4.5_0003383g0040' => 'nta', 'Nitab4.5_0003918g0010' => 'nta', 'Nitab4.5_0006760g0010' => 'nta', 'Nn1g05981' => 'nnu', 'Nn1g06288' => 'nnu', 'Nn3g16371' => 'nnu', 'Nn3g16786' => 'nnu', 'Nn4g22232' => 'nnu', 'Oeu005144.1' => 'oeu', 'Oeu005145.1' => 'oeu', 'Oeu011348.1' => 'oeu', 'Oeu016415.1' => 'oeu', 'Oeu023501.1' => 'oeu', 'Oeu044473.1' => 'oeu', 'Oeu048892.2' => 'oeu', 'Os01g0549200' => 'osa', 'Os02g0469300' => 'osa', 'Os04g0311100' => 'osa', 'Os06g0474900' => 'osa', 'Os10g0181700' => 'osa', 'Os11g0454800' => 'osa', 'Peaxi162Scf00037g00714' => 'pax', 'Peaxi162Scf00084g01217' => 'pax', 'Peaxi162Scf00257g00217' => 'pax', 'Peaxi162Scf00516g00215' => 'pax', 'Peaxi162Scf00689g00123' => 'pax', 'PGR044G2719' => 'pgr', 'PGR083G1360' => 'pgr', 'PGR102G2849' => 'pgr', 'PGR119G2534' => 'pgr', 'PGSC0003DMG400003538' => 'stu', 'PGSC0003DMG400028138' => 'stu', 'PGSC0003DMG400031732' => 'stu', 'PGSC0003DMG400038165' => 'stu', 'Phvul.002G284600' => 'pvu', 'Phvul.003G258200' => 'pvu', 'Phvul.009G176500' => 'pvu', 'Potri.003G167201' => 'ptr', 'Potri.005G118400' => 'ptr', 'Potri.012G089000' => 'ptr', 'Potri.012G102800' => 'ptr', 'Potri.015G079400' => 'ptr', 'Potri.015G100900' => 'ptr', 'Pp3c14_9810' => 'ppa', 'Pp3c15_10450' => 'ppa', 'Pp3c20_19150' => 'ppa', 'Pp3c23_12740' => 'ppa', 'Pp3c23_6310' => 'ppa', 'Pp3c24_3720' => 'ppa', 'Pp3c27_2580' => 'ppa', 'Pp3c9_8990' => 'ppa', 'PRCOL_00002854' => 'pco', 'Prupe.1G221200' => 'ppe', 'Prupe.3G289000' => 'ppe', 'Prupe.5G147000' => 'ppe', 'Prupe.6G157300' => 'ppe', 'Prupe.7G163400' => 'ppe', 'Psat0s2177g0040' => 'psa', 'Psat3g174760' => 'psa', 'Psat3g192160' => 'psa', 'Psat4g058520' => 'psa', 'Psat4g096840' => 'psa', 'Psat7g037320' => 'psa', 'PSO017G1274' => 'pso', 'PSO017G5166' => 'pso', 'PSO063G4558' => 'pso', 'PSO170G4458' => 'pso', 'PSO170G5005' => 'pso', 'PSO210G6156' => 'pso', 'PSO210G6635' => 'pso', 'PSO210G7397' => 'pso', 'PSO210G7700' => 'pso', 'PSO455G0035' => 'pso', 'PSO455G0180' => 'pso', 'PSO478G4515' => 'pso', 'PSO832G1305' => 'pso', 'PSO832G3489' => 'pso', 'QL02p075247' => 'qlo', 'QL03p051148' => 'qlo', 'QL05p010313' => 'qlo', 'QL06p034627' => 'qlo', 'QL10p001889' => 'qlo', 'QL10p010846' => 'qlo', 'RcHm_v2.0_Chr1g0350621' => 'rch', 'RcHm_v2.0_Chr1g0350641' => 'rch', 'RcHm_v2.0_Chr2g0092891' => 'rch', 'RcHm_v2.0_Chr2g0100251' => 'rch', 'RcHm_v2.0_Chr2g0158661' => 'rch', 'RcHm_v2.0_Chr2g0172741' => 'rch', 'RcHm_v2.0_Chr4g0429571' => 'rch', 'RcHm_v2.0_Chr5g0042471' => 'rch', 'RcHm_v2.0_Chr7g0189451' => 'rch', 'Rhsim08G0052000' => 'rsi', 'Rhsim08G0174400' => 'rsi', 'Rhsim08G0193200' => 'rsi', 'Rhsim10G0214800' => 'rsi', 'Rhsim10G0214900' => 'rsi', 'Rhsim10G0215000' => 'rsi', 'Rhsim12G0022900' => 'rsi', 'Rhsim12G0177500' => 'rsi', 'Rhsim12G0177700' => 'rsi', 'Sabra03G0122600' => 'sbr', 'Sabra05G0097400' => 'sbr', 'Sabra12G0064100' => 'sbr', 'Sabra15G0121300' => 'sbr', 'SalBow2G0642' => 'sbo', 'SalBow5G2667' => 'sbo', 'SalBow5G4873' => 'sbo', 'SalBow8G2395' => 'sbo', 'Sc03g0003290' => 'sci', 'Sc10g0010130' => 'sci', 'Sc22g0003650' => 'sci', 'Sed0001603' => 'sed', 'Sed0004259' => 'sed', 'Sed0006789' => 'sed', 'Sed0011838' => 'sed', 'Sed0012964' => 'sed', 'Sed0016383' => 'sed', 'Sed0019010' => 'sed', 'Sed0020188' => 'sed', 'SEGI_04702' => 'sgi', 'SEGI_17231' => 'sgi', 'SEGI_18877' => 'sgi', 'SEGI_25196' => 'sgi', 'SEGI_25515' => 'sgi', 'SEGI_28445' => 'sgi', 'SEGI_37452' => 'sgi', 'SGA_v2.0_scaffold188G40336' => 'sas', 'SGA_v2.0_scaffold228G43247' => 'sas', 'SGA_v2.0_scaffold280G46853' => 'sas', 'SGA_v2.0_scaffold34G13808' => 'sas', 'SGA_v2.0_scaffold40G15576' => 'sas', 'SGA_v2.0_scaffold611G53188' => 'sas', 'SGA_v2.0_scaffold78G25461' => 'sas', 'SGA_v2.0_scaffold90G27888' => 'sas', 'SHI08601' => 'shi', 'SHI08606' => 'shi', 'SHI17117' => 'shi', 'SHI17119' => 'shi', 'SMO118G0201' => 'smo', 'SMO169G0247' => 'smo', 'SMO176G0006' => 'smo', 'SMO176G0015' => 'smo', 'SMO202G0006' => 'smo', 'SMO240G0050' => 'smo', 'SMO286G0009' => 'smo', 'SMO338G0033' => 'smo', 'SMO356G0533' => 'smo', 'SMO364G0382' => 'smo', 'SMO367G0166' => 'smo', 'SMO367G1098' => 'smo', 'Solyc01g009920.3' => 'sly', 'Solyc01g099300.3' => 'sly', 'Solyc02g084700.3' => 'sly', 'Solyc03g097520.3' => 'sly', 'Solyc06g071580.3' => 'sly', 'Solyc10g081760.3' => 'sly', 'Sopen01g005480' => 'spe', 'Sopen01g042850' => 'spe', 'Sopen02g029370' => 'spe', 'Sopen03g028280' => 'spe', 'Sopen06g027870' => 'spe', 'Sopen10g032270' => 'spe', 'Sp5g18180' => 'spa', 'Sp6g12880' => 'spa', 'Sp6g30850' => 'spa', 'Sp7g22960' => 'spa', 'Sp7g34010' => 'spa', 'SpUn1326_0010' => 'spa', 'TAR371G0242' => 'tar', 'TAR622G0638' => 'tar', 'TAR628G1548' => 'tar', 'TAR629G1079' => 'tar', 'TAR629G3413' => 'tar', 'THA.LOC104804249' => 'tha', 'THA.LOC104808315' => 'tha', 'THA.LOC104809238' => 'tha', 'THA.LOC104825484' => 'tha', 'Thecc.01G025500' => 'tca', 'Thecc.03G015800' => 'tca', 'Thecc.03G018000' => 'tca', 'Thecc.03G134800' => 'tca', 'Thecc.04G014700' => 'tca', 'Thhalv10006991m.g' => 'esa', 'Thhalv10012707m.g' => 'esa', 'Thhalv10015739m.g' => 'esa', 'Thhalv10024553m.g' => 'esa', 'Thhalv10024673m.g' => 'esa', 'Thhalv10029187m.g' => 'esa', 'TPR.G12971' => 'tpr', 'TPR.G29396' => 'tpr', 'TPR.G33376' => 'tpr', 'TPR.G35508' => 'tpr', 'TPR.G35516' => 'tpr', 'TPR.G37317' => 'tpr', 'TPR.G37389' => 'tpr', 'TPR.G37523' => 'tpr', 'TPR.G559' => 'tpr', 'TWI14G0070' => 'twi', 'TWI14G0729' => 'twi', 'TWI18G0596' => 'twi', 'TWI39G0780' => 'twi', 'TWI39G0850' => 'twi', 'TWI73G1052' => 'twi', 'unitig_52.g17485' => 'ugi', 'unitig_61.g26355' => 'ugi', 'vmacro01040' => 'vma', 'vmacro16731' => 'vma', 'vmacro18270' => 'vma', 'vmacro19142' => 'vma', 'vmacro19407' => 'vma', 'vmacro19408' => 'vma', 'vmacro21899' => 'vma', 'vmacro21900' => 'vma', 'vmacro21901' => 'vma', 'VMungo0251G0490' => 'vmu', 'VMungo0251G1748' => 'vmu', 'VMungo1309G0421' => 'vmu', 'Zm00001eb086500' => 'zma', 'Zm00001eb150680' => 'zma', 'Zm00001eb162330' => 'zma', 'Zm00001eb203130' => 'zma', 'Zm00001eb369480' => 'zma', 'Zm00001eb382340' => 'zma', 'Zm00001eb416360' => 'zma' ) $gf_id = 'HOM05D000902' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000902' ) $data_identifier = 'HOM05D000902' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 13, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 10, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 6, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 9, 'hma' => (int) 12, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 4, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 6, 'ppa' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 6, 'rch' => (int) 9, 'rsi' => (int) 9, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 12, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 3, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416360' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000902', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '663', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02470' => 'bna', 'A01p16260' => 'bna', 'A02p01680' => 'bna', 'A03p16600' => 'bna', 'A03p55660' => 'bna', 'A03p64160' => 'bna', 'A03p64170' => 'bna', 'A08p31900' => 'bna', 'A09p59530' => 'bna', 'A10p08230' => 'bna', 'A10p25090' => 'bna', 'Aa31LG3G7100' => 'aar', 'Aa31LG3G7110' => 'aar', 'Aa31LG6G13160' => 'aar', 'Aa31LG7G10770' => 'aar', 'Aa31LG7G3830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2723' => 'aag', 'Actinidia08045' => 'ach', 'Actinidia08888' => 'ach', 'Actinidia18333' => 'ach', 'Actinidia19334' => 'ach', 'Actinidia25552' => 'ach', 'Actinidia26089' => 'ach', 'Actinidia30615' => 'ach', 'Actinidia30616' => 'ach', 'Actinidia33083' => 'ach', 'Actinidia35762' => 'ach', 'Ah.02g110620' => 'amhyb', 'Ah.11g046390' => 'amhyb', 'AL1G31670' => 'aly', 'AL6G23730' => 'aly', 'AL7G14740' => 'aly', 'AL7G14750' => 'aly', 'AL7G14760' => 'aly', 'AL7G28220' => 'aly', 'AL8G24940' => 'aly', 'Aqoxy3G01665' => 'aox', 'Aqoxy3G02853' => 'aox', 'Aqoxy5G01513' => 'aox', 'Aqoxy5G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8SKA4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ75LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKDA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0LJZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7REX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZP4YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWX7I5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2QKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS0L9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPCD8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q161UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC7XCF' => 'arhy', 'AT1G19100' => 'ath', 'AT4G24970' => 'ath', 'AT4G36270' => 'ath', 'AT4G36280' => 'ath', 'AT4G36290' => 'ath', 'AT5G13130' => 'ath', 'AT5G50780' => 'ath', 'ATR0582G266' => 'atr', 'ATR0661G195' => 'atr', 'ATR1152G031' => 'atr', 'Atru.chr11.2382' => 'acertr', 'Atru.chr12.2337' => 'acertr', 'Atru.chr3.744' => 'acertr', 'Atru.chr6.1870' => 'acertr', 'Atru.chr9.2515' => 'acertr', 'AUR62004120' => 'cqu', 'AUR62005667' => 'cqu', 'AUR62007634' => 'cqu', 'AUR62008186' => 'cqu', 'AUR62008187' => 'cqu', 'AUR62008188' => 'cqu', 'AUR62027954' => 'cqu', 'AUR62028766' => 'cqu', 'AUR62028767' => 'cqu', 'AUR62028768' => 'cqu', 'AUR62028886' => 'cqu', 'AUR62029563' => 'cqu', 'AUR62038832' => 'cqu', 'BcaB01g04149' => 'bca', 'BcaB03g12940' => 'bca', 'BcaB03g13090' => 'bca', 'BcaB03g14466' => 'bca', 'BcaB05g24035' => 'bca', 'BcaC01g06050' => 'bca', 'BcaC04g19148' => 'bca', 'BcaC04g20761' => 'bca', 'BcaC06g32845' => 'bca', 'BcaC07g41274' => 'bca', 'BcaC09g50827' => 'bca', 'BcaNung00741' => 'bca', 'BcaNung00742' => 'bca', 'BcaNung01859' => 'bca', 'BcaNung03985' => 'bca', 'BcaNung03989' => 'bca', 'BcaNung05661' => 'bca', 'BolC1t00257H' => 'bol', 'BolC1t01956H' => 'bol', 'BolC2t06534H' => 'bol', 'BolC3t14334H' => 'bol', 'BolC5t30451H' => 'bol', 'BolC7t45880H' => 'bol', 'BolC7t46586H' => 'bol', 'BolC8t49301H' => 'bol', 'BolC8t51837H' => 'bol', 'BolC9t56822H' => 'bol', 'BolC9t59235H' => 'bol', 'BraA01t00234Z' => 'bra', 'BraA01t01563Z' => 'bra', 'BraA02t05147Z' => 'bra', 'BraA03t10947Z' => 'bra', 'BraA03t14633Z' => 'bra', 'BraA08t35112Z' => 'bra', 'BraA09t41330Z' => 'bra', 'BraA10t44570Z' => 'bra', 'C01p02670' => 'bna', 'C01p20260' => 'bna', 'C02p05890' => 'bna', 'C03p19530' => 'bna', 'C05p17470' => 'bna', 'C07p53900' => 'bna', 'C07p61630' => 'bna', 'C08p16800' => 'bna', 'C08p42810' => 'bna', 'C09p39480' => 'bna', 'C09p63980' => 'bna', 'CAN.G1001.7' => 'can', 'CAN.G1034.55' => 'can', 'CAN.G143.7' => 'can', 'CAN.G3340.1' => 'can', 'CAN.G358.19' => 'can', 'CAN.G373.2' => 'can', 'CAN.G674.16' => 'can', 'CAN.G674.17' => 'can', 'CAN.G674.18' => 'can', 'CAN.G732.2' => 'can', 'CAN.G732.3' => 'can', 'CAN.G993.39' => 'can', 'CANSAT01G2052' => 'cansat', 'CANSAT80G0070' => 'cansat', 'CANSAT80G0483' => 'cansat', 'CANSAT80G0625' => 'cansat', 'CARHR019690' => 'chi', 'CARHR080280' => 'chi', 'CARHR152750' => 'chi', 'CARHR152760' => 'chi', 'CARHR152770' => 'chi', 'CARHR200340' => 'chi', 'CARHR232370' => 'chi', 'CARHR244670' => 'chi', 'CARHR244680' => 'chi', 'CARHR257520' => 'chi', 'Carub.0001s1872' => 'cru', 'Carub.0006s1130' => 'cru', 'Carub.0007s0396' => 'cru', 'Carub.0007s0397' => 'cru', 'Carub.0007s1608' => 'cru', 'Carub.0008s1068' => 'cru', 'Carub.0008s1077' => 'cru', 'Ca_16158_v3' => 'car', 'Ca_17571_v3' => 'car', 'Ca_21936_v3' => 'car', 'Ca_22350_v3' => 'car', 'CBR_g22445' => 'cbr', 'CBR_g26290' => 'cbr', 'Cc04_g09610' => 'ccan', 'Cc04_g12280' => 'ccan', 'Cc07_g10230' => 'ccan', 'CDE02G0093' => 'cde', 'CDE02G0701' => 'cde', 'CDE04G1050' => 'cde', 'CDE05G1833' => 'cde', 'CDE05G3058' => 'cde', 'CDE05G3380' => 'cde', 'CDE06G0536' => 'cde', 'Cfa006923' => 'cfa', 'Cfa009402' => 'cfa', 'Cfa018751' => 'cfa', 'Cfa019164' => 'cfa', 'Cfa022935' => 'cfa', 'Ciclev10019081m.g' => 'ccl', 'Ciclev10025076m.g' => 'ccl', 'Ciclev10030712m.g' => 'ccl', 'Ciclev10033760m.g' => 'ccl', 'CiPaw.05G105600' => 'cil', 'CiPaw.08G136700' => 'cil', 'CiPaw.11G003900' => 'cil', 'CiPaw.11G023700' => 'cil', 'CiPaw.12G003700' => 'cil', 'ClCG06G017100' => 'cla', 'ClCG06G018110' => 'cla', 'ClCG07G008800' => 'cla', 'ClCG07G015330' => 'cla', 'COL.COLO4_13698' => 'col', 'COL.COLO4_16659' => 'col', 'COL.COLO4_21986' => 'col', 'COL.COLO4_24049' => 'col', 'COL.COLO4_29061' => 'col', 'COL.COLO4_29075' => 'col', 'COL.COLO4_30094' => 'col', 'Cpa.g.c33689' => 'cpa', 'Cpa.g.sc108.39' => 'cpa', 'Cpa.g.sc108.41' => 'cpa', 'Cpa.g.sc1163.1' => 'cpa', 'Cpa.g.sc4.155' => 'cpa', 'Cpa.g.sc6.194' => 'cpa', 'CsaV3_1G000340' => 'csa', 'CsaV3_1G001400' => 'csa', 'CsaV3_4G002220' => 'csa', 'CsaV3_4G005370' => 'csa', 'CSS0007487' => 'camsi', 'CSS0008066' => 'camsi', 'CSS0009120' => 'camsi', 'CSS0015512' => 'camsi', 'CSS0022409' => 'camsi', 'CSS0025358' => 'camsi', 'CSS0044547' => 'camsi', 'DCAR_013057' => 'dca', 'DCAR_015058' => 'dca', 'DCAR_016027' => 'dca', 'DCAR_017327' => 'dca', 'DCAR_020743' => 'dca', 'DCAR_026157' => 'dca', 'DCAR_032339' => 'dca', 'DCAR_032340' => 'dca', 'Dinv11200' => 'din', 'Dinv11201' => 'din', 'Dinv20631' => 'din', 'Dinv23182' => 'din', 'Dinv33466' => 'din', 'Dinv33583' => 'din', 'Dinv38565' => 'din', 'Duzib068G0200' => 'dzi', 'Duzib147G0132' => 'dzi', 'Duzib147G0635' => 'dzi', 'Duzib205G1670' => 'dzi', 'Duzib251G0606' => 'dzi', 'ECA232G3336' => 'eca', 'ECA232G3763' => 'eca', 'ECA232G4845' => 'eca', 'ECA234G1607' => 'eca', 'ECA246G0932' => 'eca', 'ECA247G0781' => 'eca', 'ECA247G1932' => 'eca', 'ECA247G2079' => 'eca', 'ECA247G3338' => 'eca', 'ECA247G4115' => 'eca', 'EL10Ac3g06552' => 'bvu', 'EL10Ac5g10721' => 'bvu', 'EL10Ac5g10722' => 'bvu', 'EL10Ac5g10723' => 'bvu', 'EL10Ac5g11361' => 'bvu', 'EL10Ac6g13553' => 'bvu', 'EL10As8g23872' => 'bvu', 'Eucgr.B00250' => 'egr', 'Eucgr.B00251' => 'egr', 'Eucgr.B03533' => 'egr', 'Eucgr.I02381' => 'egr', 'Eucgr.K02700' => 'egr', 'FAN02G0174' => 'fan', 'FAN02G3146' => 'fan', 'FAN04G1672' => 'fan', 'FAN04G2273' => 'fan', 'FAN05G2791' => 'fan', 'FAN05G4035' => 'fan', 'FAN07G0834' => 'fan', 'FAN08G1198' => 'fan', 'FAN09G4182' => 'fan', 'FAN12G0496' => 'fan', 'FAN13G1027' => 'fan', 'FAN13G2951' => 'fan', 'FAN14G0705' => 'fan', 'FAN14G0720' => 'fan', 'FAN17G0201' => 'fan', 'FAN17G2665' => 'fan', 'FAN18G1456' => 'fan', 'FAN18G1525' => 'fan', 'FAN18G3500' => 'fan', 'FAN28G2670' => 'fan', 'FvH4_1g12391' => 'fve', 'FvH4_4g23220' => 'fve', 'FvH4_5g08810' => 'fve', 'FvH4_5g28960' => 'fve', 'FvH4_6g42820' => 'fve', 'FvH4_6g51110' => 'fve', 'Glyma.02G051802' => 'gma', 'Glyma.04G185300' => 'gma', 'Glyma.05G202900' => 'gma', 'Glyma.08G010300' => 'gma', 'Glyma.16G131900' => 'gma', 'Glyma.17G087900' => 'gma', 'Gohir.A07G048600' => 'ghi', 'Gohir.A11G179000' => 'ghi', 'Gohir.A12G140900' => 'ghi', 'Gohir.A12G140950' => 'ghi', 'Gohir.A12G191700' => 'ghi', 'Gohir.A13G086300' => 'ghi', 'Gohir.D07G052900' => 'ghi', 'Gohir.D11G186600' => 'ghi', 'Gohir.D12G145575' => 'ghi', 'Gohir.D12G145650' => 'ghi', 'Gohir.D12G145725' => 'ghi', 'Gohir.D12G194050' => 'ghi', 'Gohir.D13G091800' => 'ghi', 'Gorai.001G055900' => 'gra', 'Gorai.007G198400' => 'gra', 'Gorai.008G157000' => 'gra', 'Gorai.008G157100' => 'gra', 'Gorai.008G208700' => 'gra', 'Gorai.010G138700' => 'gra', 'GSVIVG01000977001' => 'vvi', 'GSVIVG01007708001' => 'vvi', 'GSVIVG01008587001' => 'vvi', 'GSVIVG01018849001' => 'vvi', 'GSVIVG01032432001' => 'vvi', 'HanXRQChr02g0034131' => 'han', 'HanXRQChr02g0035981' => 'han', 'HanXRQChr02g0035991' => 'han', 'HanXRQChr05g0155611' => 'han', 'HanXRQChr05g0155621' => 'han', 'HanXRQChr08g0236501' => 'han', 'HanXRQChr09g0261321' => 'han', 'HanXRQChr09g0272081' => 'han', 'HanXRQChr10g0310741' => 'han', 'HanXRQChr11g0325591' => 'han', 'HanXRQChr12g0385691' => 'han', 'HanXRQChr13g0387801' => 'han', 'HanXRQChr15g0463011' => 'han', 'Haze_03826' => 'cav', 'Haze_03827' => 'cav', 'Haze_07183' => 'cav', 'Haze_07537' => 'cav', 'Haze_07539' => 'cav', 'Haze_12461' => 'cav', 'Haze_16115' => 'cav', 'Haze_16808' => 'cav', 'Haze_18531' => 'cav', 'Hma1.2p1_0046F.1_g026700' => 'hma', 'Hma1.2p1_0046F.1_g026710' => 'hma', 'Hma1.2p1_0168F.1_g074340' => 'hma', 'Hma1.2p1_0266F.1_g107030' => 'hma', 'Hma1.2p1_0266F.1_g107060' => 'hma', 'Hma1.2p1_0275F.1_g110510' => 'hma', 'Hma1.2p1_0592F.1_g185490' => 'hma', 'Hma1.2p1_0592F.1_g185500' => 'hma', 'Hma1.2p1_0592F.1_g185510' => 'hma', 'Hma1.2p1_0592F.1_g185520' => 'hma', 'Hma1.2p1_0592F.1_g185530' => 'hma', 'Hma1.2p1_0818F.1_g223450' => 'hma', 'HPP92_009708' => 'vpl', 'HPP92_009793' => 'vpl', 'HPP92_009796' => 'vpl', 'HPP92_009797' => 'vpl', 'HPP92_014940' => 'vpl', 'HPP92_014988' => 'vpl', 'Hund02463' => 'sun', 'Hund02760' => 'sun', 'Hund05071' => 'sun', 'Hund10108' => 'sun', 'Hund11204' => 'sun', 'Hund14016' => 'sun', 'Hund16464' => 'sun', 'Lalb_Chr09g0333391' => 'lal', 'Lalb_Chr11g0070461' => 'lal', 'Lalb_Chr12g0201671' => 'lal', 'Lalb_Chr13g0297161' => 'lal', 'Lj1g0002823' => 'lja', 'Lj3C1074T6' => 'lonja', 'Lj4A212T28' => 'lonja', 'Lj4g0005516' => 'lja', 'Lj4g0013705' => 'lja', 'Lj4g0027865' => 'lja', 'Lj5C92G16' => 'lonja', 'Lj5C92T12' => 'lonja', 'Lj7C596T3' => 'lonja', 'Lj9A446G59' => 'lonja', 'Lj9A482G21' => 'lonja', 'Lsat_1_v5_gn_1_28261' => 'lsa', 'Lsat_1_v5_gn_1_28281' => 'lsa', 'Lsat_1_v5_gn_1_32721' => 'lsa', 'Lsat_1_v5_gn_4_151760' => 'lsa', 'Lsat_1_v5_gn_4_2120' => 'lsa', 'Lsat_1_v5_gn_4_75761' => 'lsa', 'Lsat_1_v5_gn_5_10920' => 'lsa', 'Manes.02G099900' => 'mes', 'Manes.11G096200' => 'mes', 'Manes.12G007200' => 'mes', 'Manes.14G048300' => 'mes', 'Manes.17G114700' => 'mes', 'Mapoly0002s0070' => 'mpo', 'Mapoly0029s0099' => 'mpo', 'MBI07_g24742_MAGBIO' => 'mbi', 'MBI10_g27988_MAGBIO' => 'mbi', 'MBI11_g13057_MAGBIO' => 'mbi', 'MD02G1137200' => 'mdo', 'MD06G1137200' => 'mdo', 'MD07G1122300' => 'mdo', 'MD09G1078200' => 'mdo', 'MD13G1123700' => 'mdo', 'MD14G1151900' => 'mdo', 'MD17G1030900' => 'mdo', 'MD17G1068200' => 'mdo', 'MD17G1068600' => 'mdo', 'Medtr3g077540' => 'mtr', 'Medtr4g105530' => 'mtr', 'Medtr8g076580' => 'mtr', 'Medtr8g076590' => 'mtr', 'Medtr8g096410' => 'mtr', 'MELO3C016411.2' => 'cme', 'MELO3C017780.2' => 'cme', 'MELO3C022560.2' => 'cme', 'MELO3C026187.2' => 'cme', 'MELO3C026286.2' => 'cme', 'MELO3C032854.2' => 'cme', 'Migut.H02495' => 'egut', 'Migut.I00561' => 'egut', 'Migut.K01015' => 'egut', 'Migut.K01016' => 'egut', 'Migut.L00743' => 'egut', 'Migut.L00744' => 'egut', 'Migut.L00746' => 'egut', 'Migut.L00798' => 'egut', 'Migut.L00799' => 'egut', 'Migut.N02096' => 'egut', 'MSTRG.11259' => 'ama', 'MSTRG.23142' => 'ama', 'MSTRG.2499' => 'ama', 'Nitab4.5_0000003g0730' => 'nta', 'Nitab4.5_0000137g0020' => 'nta', 'Nitab4.5_0000721g0210' => 'nta', 'Nitab4.5_0000723g0050' => 'nta', 'Nitab4.5_0000913g0070' => 'nta', 'Nitab4.5_0001332g0040' => 'nta', 'Nitab4.5_0001771g0050' => 'nta', 'Nitab4.5_0001918g0050' => 'nta', 'Nitab4.5_0002686g0030' => 'nta', 'Nitab4.5_0003156g0020' => 'nta', 'Nitab4.5_0003383g0040' => 'nta', 'Nitab4.5_0003918g0010' => 'nta', 'Nitab4.5_0006760g0010' => 'nta', 'Nn1g05981' => 'nnu', 'Nn1g06288' => 'nnu', 'Nn3g16371' => 'nnu', 'Nn3g16786' => 'nnu', 'Nn4g22232' => 'nnu', 'Oeu005144.1' => 'oeu', 'Oeu005145.1' => 'oeu', 'Oeu011348.1' => 'oeu', 'Oeu016415.1' => 'oeu', 'Oeu023501.1' => 'oeu', 'Oeu044473.1' => 'oeu', 'Oeu048892.2' => 'oeu', 'Os01g0549200' => 'osa', 'Os02g0469300' => 'osa', 'Os04g0311100' => 'osa', 'Os06g0474900' => 'osa', 'Os10g0181700' => 'osa', 'Os11g0454800' => 'osa', 'Peaxi162Scf00037g00714' => 'pax', 'Peaxi162Scf00084g01217' => 'pax', 'Peaxi162Scf00257g00217' => 'pax', 'Peaxi162Scf00516g00215' => 'pax', 'Peaxi162Scf00689g00123' => 'pax', 'PGR044G2719' => 'pgr', 'PGR083G1360' => 'pgr', 'PGR102G2849' => 'pgr', 'PGR119G2534' => 'pgr', 'PGSC0003DMG400003538' => 'stu', 'PGSC0003DMG400028138' => 'stu', 'PGSC0003DMG400031732' => 'stu', 'PGSC0003DMG400038165' => 'stu', 'Phvul.002G284600' => 'pvu', 'Phvul.003G258200' => 'pvu', 'Phvul.009G176500' => 'pvu', 'Potri.003G167201' => 'ptr', 'Potri.005G118400' => 'ptr', 'Potri.012G089000' => 'ptr', 'Potri.012G102800' => 'ptr', 'Potri.015G079400' => 'ptr', 'Potri.015G100900' => 'ptr', 'Pp3c14_9810' => 'ppa', 'Pp3c15_10450' => 'ppa', 'Pp3c20_19150' => 'ppa', 'Pp3c23_12740' => 'ppa', 'Pp3c23_6310' => 'ppa', 'Pp3c24_3720' => 'ppa', 'Pp3c27_2580' => 'ppa', 'Pp3c9_8990' => 'ppa', 'PRCOL_00002854' => 'pco', 'Prupe.1G221200' => 'ppe', 'Prupe.3G289000' => 'ppe', 'Prupe.5G147000' => 'ppe', 'Prupe.6G157300' => 'ppe', 'Prupe.7G163400' => 'ppe', 'Psat0s2177g0040' => 'psa', 'Psat3g174760' => 'psa', 'Psat3g192160' => 'psa', 'Psat4g058520' => 'psa', 'Psat4g096840' => 'psa', 'Psat7g037320' => 'psa', 'PSO017G1274' => 'pso', 'PSO017G5166' => 'pso', 'PSO063G4558' => 'pso', 'PSO170G4458' => 'pso', 'PSO170G5005' => 'pso', 'PSO210G6156' => 'pso', 'PSO210G6635' => 'pso', 'PSO210G7397' => 'pso', 'PSO210G7700' => 'pso', 'PSO455G0035' => 'pso', 'PSO455G0180' => 'pso', 'PSO478G4515' => 'pso', 'PSO832G1305' => 'pso', 'PSO832G3489' => 'pso', 'QL02p075247' => 'qlo', 'QL03p051148' => 'qlo', 'QL05p010313' => 'qlo', 'QL06p034627' => 'qlo', 'QL10p001889' => 'qlo', 'QL10p010846' => 'qlo', 'RcHm_v2.0_Chr1g0350621' => 'rch', 'RcHm_v2.0_Chr1g0350641' => 'rch', 'RcHm_v2.0_Chr2g0092891' => 'rch', 'RcHm_v2.0_Chr2g0100251' => 'rch', 'RcHm_v2.0_Chr2g0158661' => 'rch', 'RcHm_v2.0_Chr2g0172741' => 'rch', 'RcHm_v2.0_Chr4g0429571' => 'rch', 'RcHm_v2.0_Chr5g0042471' => 'rch', 'RcHm_v2.0_Chr7g0189451' => 'rch', 'Rhsim08G0052000' => 'rsi', 'Rhsim08G0174400' => 'rsi', 'Rhsim08G0193200' => 'rsi', 'Rhsim10G0214800' => 'rsi', 'Rhsim10G0214900' => 'rsi', 'Rhsim10G0215000' => 'rsi', 'Rhsim12G0022900' => 'rsi', 'Rhsim12G0177500' => 'rsi', 'Rhsim12G0177700' => 'rsi', 'Sabra03G0122600' => 'sbr', 'Sabra05G0097400' => 'sbr', 'Sabra12G0064100' => 'sbr', 'Sabra15G0121300' => 'sbr', 'SalBow2G0642' => 'sbo', 'SalBow5G2667' => 'sbo', 'SalBow5G4873' => 'sbo', 'SalBow8G2395' => 'sbo', 'Sc03g0003290' => 'sci', 'Sc10g0010130' => 'sci', 'Sc22g0003650' => 'sci', 'Sed0001603' => 'sed', 'Sed0004259' => 'sed', 'Sed0006789' => 'sed', 'Sed0011838' => 'sed', 'Sed0012964' => 'sed', 'Sed0016383' => 'sed', 'Sed0019010' => 'sed', 'Sed0020188' => 'sed', 'SEGI_04702' => 'sgi', 'SEGI_17231' => 'sgi', 'SEGI_18877' => 'sgi', 'SEGI_25196' => 'sgi', 'SEGI_25515' => 'sgi', 'SEGI_28445' => 'sgi', 'SEGI_37452' => 'sgi', 'SGA_v2.0_scaffold188G40336' => 'sas', 'SGA_v2.0_scaffold228G43247' => 'sas', 'SGA_v2.0_scaffold280G46853' => 'sas', 'SGA_v2.0_scaffold34G13808' => 'sas', 'SGA_v2.0_scaffold40G15576' => 'sas', 'SGA_v2.0_scaffold611G53188' => 'sas', 'SGA_v2.0_scaffold78G25461' => 'sas', 'SGA_v2.0_scaffold90G27888' => 'sas', 'SHI08601' => 'shi', 'SHI08606' => 'shi', 'SHI17117' => 'shi', 'SHI17119' => 'shi', 'SMO118G0201' => 'smo', 'SMO169G0247' => 'smo', 'SMO176G0006' => 'smo', 'SMO176G0015' => 'smo', 'SMO202G0006' => 'smo', 'SMO240G0050' => 'smo', 'SMO286G0009' => 'smo', 'SMO338G0033' => 'smo', 'SMO356G0533' => 'smo', 'SMO364G0382' => 'smo', 'SMO367G0166' => 'smo', 'SMO367G1098' => 'smo', 'Solyc01g009920.3' => 'sly', 'Solyc01g099300.3' => 'sly', 'Solyc02g084700.3' => 'sly', 'Solyc03g097520.3' => 'sly', 'Solyc06g071580.3' => 'sly', 'Solyc10g081760.3' => 'sly', 'Sopen01g005480' => 'spe', 'Sopen01g042850' => 'spe', 'Sopen02g029370' => 'spe', 'Sopen03g028280' => 'spe', 'Sopen06g027870' => 'spe', 'Sopen10g032270' => 'spe', 'Sp5g18180' => 'spa', 'Sp6g12880' => 'spa', 'Sp6g30850' => 'spa', 'Sp7g22960' => 'spa', 'Sp7g34010' => 'spa', 'SpUn1326_0010' => 'spa', 'TAR371G0242' => 'tar', 'TAR622G0638' => 'tar', 'TAR628G1548' => 'tar', 'TAR629G1079' => 'tar', 'TAR629G3413' => 'tar', 'THA.LOC104804249' => 'tha', 'THA.LOC104808315' => 'tha', 'THA.LOC104809238' => 'tha', 'THA.LOC104825484' => 'tha', 'Thecc.01G025500' => 'tca', 'Thecc.03G015800' => 'tca', 'Thecc.03G018000' => 'tca', 'Thecc.03G134800' => 'tca', 'Thecc.04G014700' => 'tca', 'Thhalv10006991m.g' => 'esa', 'Thhalv10012707m.g' => 'esa', 'Thhalv10015739m.g' => 'esa', 'Thhalv10024553m.g' => 'esa', 'Thhalv10024673m.g' => 'esa', 'Thhalv10029187m.g' => 'esa', 'TPR.G12971' => 'tpr', 'TPR.G29396' => 'tpr', 'TPR.G33376' => 'tpr', 'TPR.G35508' => 'tpr', 'TPR.G35516' => 'tpr', 'TPR.G37317' => 'tpr', 'TPR.G37389' => 'tpr', 'TPR.G37523' => 'tpr', 'TPR.G559' => 'tpr', 'TWI14G0070' => 'twi', 'TWI14G0729' => 'twi', 'TWI18G0596' => 'twi', 'TWI39G0780' => 'twi', 'TWI39G0850' => 'twi', 'TWI73G1052' => 'twi', 'unitig_52.g17485' => 'ugi', 'unitig_61.g26355' => 'ugi', 'vmacro01040' => 'vma', 'vmacro16731' => 'vma', 'vmacro18270' => 'vma', 'vmacro19142' => 'vma', 'vmacro19407' => 'vma', 'vmacro19408' => 'vma', 'vmacro21899' => 'vma', 'vmacro21900' => 'vma', 'vmacro21901' => 'vma', 'VMungo0251G0490' => 'vmu', 'VMungo0251G1748' => 'vmu', 'VMungo1309G0421' => 'vmu', 'Zm00001eb086500' => 'zma', 'Zm00001eb150680' => 'zma', 'Zm00001eb162330' => 'zma', 'Zm00001eb203130' => 'zma', 'Zm00001eb369480' => 'zma', 'Zm00001eb382340' => 'zma', 'Zm00001eb416360' => 'zma' ), 'gf_id' => 'HOM05D000902', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000902' ), 'data_identifier' => 'HOM05D000902', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000902', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '663', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02470' => 'bna', 'A01p16260' => 'bna', 'A02p01680' => 'bna', 'A03p16600' => 'bna', 'A03p55660' => 'bna', 'A03p64160' => 'bna', 'A03p64170' => 'bna', 'A08p31900' => 'bna', 'A09p59530' => 'bna', 'A10p08230' => 'bna', 'A10p25090' => 'bna', 'Aa31LG3G7100' => 'aar', 'Aa31LG3G7110' => 'aar', 'Aa31LG6G13160' => 'aar', 'Aa31LG7G10770' => 'aar', 'Aa31LG7G3830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2723' => 'aag', 'Actinidia08045' => 'ach', 'Actinidia08888' => 'ach', 'Actinidia18333' => 'ach', 'Actinidia19334' => 'ach', 'Actinidia25552' => 'ach', 'Actinidia26089' => 'ach', 'Actinidia30615' => 'ach', 'Actinidia30616' => 'ach', 'Actinidia33083' => 'ach', 'Actinidia35762' => 'ach', 'Ah.02g110620' => 'amhyb', 'Ah.11g046390' => 'amhyb', 'AL1G31670' => 'aly', 'AL6G23730' => 'aly', 'AL7G14740' => 'aly', 'AL7G14750' => 'aly', 'AL7G14760' => 'aly', 'AL7G28220' => 'aly', 'AL8G24940' => 'aly', 'Aqoxy3G01665' => 'aox', 'Aqoxy3G02853' => 'aox', 'Aqoxy5G01513' => 'aox', 'Aqoxy5G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8SKA4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ75LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKDA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0LJZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7REX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZP4YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWX7I5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2QKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS0L9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPCD8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q161UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC7XCF' => 'arhy', 'AT1G19100' => 'ath', 'AT4G24970' => 'ath', 'AT4G36270' => 'ath', 'AT4G36280' => 'ath', 'AT4G36290' => 'ath', 'AT5G13130' => 'ath', 'AT5G50780' => 'ath', 'ATR0582G266' => 'atr', 'ATR0661G195' => 'atr', 'ATR1152G031' => 'atr', 'Atru.chr11.2382' => 'acertr', 'Atru.chr12.2337' => 'acertr', 'Atru.chr3.744' => 'acertr', 'Atru.chr6.1870' => 'acertr', 'Atru.chr9.2515' => 'acertr', 'AUR62004120' => 'cqu', 'AUR62005667' => 'cqu', 'AUR62007634' => 'cqu', 'AUR62008186' => 'cqu', 'AUR62008187' => 'cqu', 'AUR62008188' => 'cqu', 'AUR62027954' => 'cqu', 'AUR62028766' => 'cqu', 'AUR62028767' => 'cqu', 'AUR62028768' => 'cqu', 'AUR62028886' => 'cqu', 'AUR62029563' => 'cqu', 'AUR62038832' => 'cqu', 'BcaB01g04149' => 'bca', 'BcaB03g12940' => 'bca', 'BcaB03g13090' => 'bca', 'BcaB03g14466' => 'bca', 'BcaB05g24035' => 'bca', 'BcaC01g06050' => 'bca', 'BcaC04g19148' => 'bca', 'BcaC04g20761' => 'bca', 'BcaC06g32845' => 'bca', 'BcaC07g41274' => 'bca', 'BcaC09g50827' => 'bca', 'BcaNung00741' => 'bca', 'BcaNung00742' => 'bca', 'BcaNung01859' => 'bca', 'BcaNung03985' => 'bca', 'BcaNung03989' => 'bca', 'BcaNung05661' => 'bca', 'BolC1t00257H' => 'bol', 'BolC1t01956H' => 'bol', 'BolC2t06534H' => 'bol', 'BolC3t14334H' => 'bol', 'BolC5t30451H' => 'bol', 'BolC7t45880H' => 'bol', 'BolC7t46586H' => 'bol', 'BolC8t49301H' => 'bol', 'BolC8t51837H' => 'bol', 'BolC9t56822H' => 'bol', 'BolC9t59235H' => 'bol', 'BraA01t00234Z' => 'bra', 'BraA01t01563Z' => 'bra', 'BraA02t05147Z' => 'bra', 'BraA03t10947Z' => 'bra', 'BraA03t14633Z' => 'bra', 'BraA08t35112Z' => 'bra', 'BraA09t41330Z' => 'bra', 'BraA10t44570Z' => 'bra', 'C01p02670' => 'bna', 'C01p20260' => 'bna', 'C02p05890' => 'bna', 'C03p19530' => 'bna', 'C05p17470' => 'bna', 'C07p53900' => 'bna', 'C07p61630' => 'bna', 'C08p16800' => 'bna', 'C08p42810' => 'bna', 'C09p39480' => 'bna', 'C09p63980' => 'bna', 'CAN.G1001.7' => 'can', 'CAN.G1034.55' => 'can', 'CAN.G143.7' => 'can', 'CAN.G3340.1' => 'can', 'CAN.G358.19' => 'can', 'CAN.G373.2' => 'can', 'CAN.G674.16' => 'can', 'CAN.G674.17' => 'can', 'CAN.G674.18' => 'can', 'CAN.G732.2' => 'can', 'CAN.G732.3' => 'can', 'CAN.G993.39' => 'can', 'CANSAT01G2052' => 'cansat', 'CANSAT80G0070' => 'cansat', 'CANSAT80G0483' => 'cansat', 'CANSAT80G0625' => 'cansat', 'CARHR019690' => 'chi', 'CARHR080280' => 'chi', 'CARHR152750' => 'chi', 'CARHR152760' => 'chi', 'CARHR152770' => 'chi', 'CARHR200340' => 'chi', 'CARHR232370' => 'chi', 'CARHR244670' => 'chi', 'CARHR244680' => 'chi', 'CARHR257520' => 'chi', 'Carub.0001s1872' => 'cru', 'Carub.0006s1130' => 'cru', 'Carub.0007s0396' => 'cru', 'Carub.0007s0397' => 'cru', 'Carub.0007s1608' => 'cru', 'Carub.0008s1068' => 'cru', 'Carub.0008s1077' => 'cru', 'Ca_16158_v3' => 'car', 'Ca_17571_v3' => 'car', 'Ca_21936_v3' => 'car', 'Ca_22350_v3' => 'car', 'CBR_g22445' => 'cbr', 'CBR_g26290' => 'cbr', 'Cc04_g09610' => 'ccan', 'Cc04_g12280' => 'ccan', 'Cc07_g10230' => 'ccan', 'CDE02G0093' => 'cde', 'CDE02G0701' => 'cde', 'CDE04G1050' => 'cde', 'CDE05G1833' => 'cde', 'CDE05G3058' => 'cde', 'CDE05G3380' => 'cde', 'CDE06G0536' => 'cde', 'Cfa006923' => 'cfa', 'Cfa009402' => 'cfa', 'Cfa018751' => 'cfa', 'Cfa019164' => 'cfa', 'Cfa022935' => 'cfa', 'Ciclev10019081m.g' => 'ccl', 'Ciclev10025076m.g' => 'ccl', 'Ciclev10030712m.g' => 'ccl', 'Ciclev10033760m.g' => 'ccl', 'CiPaw.05G105600' => 'cil', 'CiPaw.08G136700' => 'cil', 'CiPaw.11G003900' => 'cil', 'CiPaw.11G023700' => 'cil', 'CiPaw.12G003700' => 'cil', 'ClCG06G017100' => 'cla', 'ClCG06G018110' => 'cla', 'ClCG07G008800' => 'cla', 'ClCG07G015330' => 'cla', 'COL.COLO4_13698' => 'col', 'COL.COLO4_16659' => 'col', 'COL.COLO4_21986' => 'col', 'COL.COLO4_24049' => 'col', 'COL.COLO4_29061' => 'col', 'COL.COLO4_29075' => 'col', 'COL.COLO4_30094' => 'col', 'Cpa.g.c33689' => 'cpa', 'Cpa.g.sc108.39' => 'cpa', 'Cpa.g.sc108.41' => 'cpa', 'Cpa.g.sc1163.1' => 'cpa', 'Cpa.g.sc4.155' => 'cpa', 'Cpa.g.sc6.194' => 'cpa', 'CsaV3_1G000340' => 'csa', 'CsaV3_1G001400' => 'csa', 'CsaV3_4G002220' => 'csa', 'CsaV3_4G005370' => 'csa', 'CSS0007487' => 'camsi', 'CSS0008066' => 'camsi', 'CSS0009120' => 'camsi', 'CSS0015512' => 'camsi', 'CSS0022409' => 'camsi', 'CSS0025358' => 'camsi', 'CSS0044547' => 'camsi', 'DCAR_013057' => 'dca', 'DCAR_015058' => 'dca', 'DCAR_016027' => 'dca', 'DCAR_017327' => 'dca', 'DCAR_020743' => 'dca', 'DCAR_026157' => 'dca', 'DCAR_032339' => 'dca', 'DCAR_032340' => 'dca', 'Dinv11200' => 'din', 'Dinv11201' => 'din', 'Dinv20631' => 'din', 'Dinv23182' => 'din', 'Dinv33466' => 'din', 'Dinv33583' => 'din', 'Dinv38565' => 'din', 'Duzib068G0200' => 'dzi', 'Duzib147G0132' => 'dzi', 'Duzib147G0635' => 'dzi', 'Duzib205G1670' => 'dzi', 'Duzib251G0606' => 'dzi', 'ECA232G3336' => 'eca', 'ECA232G3763' => 'eca', 'ECA232G4845' => 'eca', 'ECA234G1607' => 'eca', 'ECA246G0932' => 'eca', 'ECA247G0781' => 'eca', 'ECA247G1932' => 'eca', 'ECA247G2079' => 'eca', 'ECA247G3338' => 'eca', 'ECA247G4115' => 'eca', 'EL10Ac3g06552' => 'bvu', 'EL10Ac5g10721' => 'bvu', 'EL10Ac5g10722' => 'bvu', 'EL10Ac5g10723' => 'bvu', 'EL10Ac5g11361' => 'bvu', 'EL10Ac6g13553' => 'bvu', 'EL10As8g23872' => 'bvu', 'Eucgr.B00250' => 'egr', 'Eucgr.B00251' => 'egr', 'Eucgr.B03533' => 'egr', 'Eucgr.I02381' => 'egr', 'Eucgr.K02700' => 'egr', 'FAN02G0174' => 'fan', 'FAN02G3146' => 'fan', 'FAN04G1672' => 'fan', 'FAN04G2273' => 'fan', 'FAN05G2791' => 'fan', 'FAN05G4035' => 'fan', 'FAN07G0834' => 'fan', 'FAN08G1198' => 'fan', 'FAN09G4182' => 'fan', 'FAN12G0496' => 'fan', 'FAN13G1027' => 'fan', 'FAN13G2951' => 'fan', 'FAN14G0705' => 'fan', 'FAN14G0720' => 'fan', 'FAN17G0201' => 'fan', 'FAN17G2665' => 'fan', 'FAN18G1456' => 'fan', 'FAN18G1525' => 'fan', 'FAN18G3500' => 'fan', 'FAN28G2670' => 'fan', 'FvH4_1g12391' => 'fve', 'FvH4_4g23220' => 'fve', 'FvH4_5g08810' => 'fve', 'FvH4_5g28960' => 'fve', 'FvH4_6g42820' => 'fve', 'FvH4_6g51110' => 'fve', 'Glyma.02G051802' => 'gma', 'Glyma.04G185300' => 'gma', 'Glyma.05G202900' => 'gma', 'Glyma.08G010300' => 'gma', 'Glyma.16G131900' => 'gma', 'Glyma.17G087900' => 'gma', 'Gohir.A07G048600' => 'ghi', 'Gohir.A11G179000' => 'ghi', 'Gohir.A12G140900' => 'ghi', 'Gohir.A12G140950' => 'ghi', 'Gohir.A12G191700' => 'ghi', 'Gohir.A13G086300' => 'ghi', 'Gohir.D07G052900' => 'ghi', 'Gohir.D11G186600' => 'ghi', 'Gohir.D12G145575' => 'ghi', 'Gohir.D12G145650' => 'ghi', 'Gohir.D12G145725' => 'ghi', 'Gohir.D12G194050' => 'ghi', 'Gohir.D13G091800' => 'ghi', 'Gorai.001G055900' => 'gra', 'Gorai.007G198400' => 'gra', 'Gorai.008G157000' => 'gra', 'Gorai.008G157100' => 'gra', 'Gorai.008G208700' => 'gra', 'Gorai.010G138700' => 'gra', 'GSVIVG01000977001' => 'vvi', 'GSVIVG01007708001' => 'vvi', 'GSVIVG01008587001' => 'vvi', 'GSVIVG01018849001' => 'vvi', 'GSVIVG01032432001' => 'vvi', 'HanXRQChr02g0034131' => 'han', 'HanXRQChr02g0035981' => 'han', 'HanXRQChr02g0035991' => 'han', 'HanXRQChr05g0155611' => 'han', 'HanXRQChr05g0155621' => 'han', 'HanXRQChr08g0236501' => 'han', 'HanXRQChr09g0261321' => 'han', 'HanXRQChr09g0272081' => 'han', 'HanXRQChr10g0310741' => 'han', 'HanXRQChr11g0325591' => 'han', 'HanXRQChr12g0385691' => 'han', 'HanXRQChr13g0387801' => 'han', 'HanXRQChr15g0463011' => 'han', 'Haze_03826' => 'cav', 'Haze_03827' => 'cav', 'Haze_07183' => 'cav', 'Haze_07537' => 'cav', 'Haze_07539' => 'cav', 'Haze_12461' => 'cav', 'Haze_16115' => 'cav', 'Haze_16808' => 'cav', 'Haze_18531' => 'cav', 'Hma1.2p1_0046F.1_g026700' => 'hma', 'Hma1.2p1_0046F.1_g026710' => 'hma', 'Hma1.2p1_0168F.1_g074340' => 'hma', 'Hma1.2p1_0266F.1_g107030' => 'hma', 'Hma1.2p1_0266F.1_g107060' => 'hma', 'Hma1.2p1_0275F.1_g110510' => 'hma', 'Hma1.2p1_0592F.1_g185490' => 'hma', 'Hma1.2p1_0592F.1_g185500' => 'hma', 'Hma1.2p1_0592F.1_g185510' => 'hma', 'Hma1.2p1_0592F.1_g185520' => 'hma', 'Hma1.2p1_0592F.1_g185530' => 'hma', 'Hma1.2p1_0818F.1_g223450' => 'hma', 'HPP92_009708' => 'vpl', 'HPP92_009793' => 'vpl', 'HPP92_009796' => 'vpl', 'HPP92_009797' => 'vpl', 'HPP92_014940' => 'vpl', 'HPP92_014988' => 'vpl', 'Hund02463' => 'sun', 'Hund02760' => 'sun', 'Hund05071' => 'sun', 'Hund10108' => 'sun', 'Hund11204' => 'sun', 'Hund14016' => 'sun', 'Hund16464' => 'sun', 'Lalb_Chr09g0333391' => 'lal', 'Lalb_Chr11g0070461' => 'lal', 'Lalb_Chr12g0201671' => 'lal', 'Lalb_Chr13g0297161' => 'lal', 'Lj1g0002823' => 'lja', 'Lj3C1074T6' => 'lonja', 'Lj4A212T28' => 'lonja', 'Lj4g0005516' => 'lja', 'Lj4g0013705' => 'lja', 'Lj4g0027865' => 'lja', 'Lj5C92G16' => 'lonja', 'Lj5C92T12' => 'lonja', 'Lj7C596T3' => 'lonja', 'Lj9A446G59' => 'lonja', 'Lj9A482G21' => 'lonja', 'Lsat_1_v5_gn_1_28261' => 'lsa', 'Lsat_1_v5_gn_1_28281' => 'lsa', 'Lsat_1_v5_gn_1_32721' => 'lsa', 'Lsat_1_v5_gn_4_151760' => 'lsa', 'Lsat_1_v5_gn_4_2120' => 'lsa', 'Lsat_1_v5_gn_4_75761' => 'lsa', 'Lsat_1_v5_gn_5_10920' => 'lsa', 'Manes.02G099900' => 'mes', 'Manes.11G096200' => 'mes', 'Manes.12G007200' => 'mes', 'Manes.14G048300' => 'mes', 'Manes.17G114700' => 'mes', 'Mapoly0002s0070' => 'mpo', 'Mapoly0029s0099' => 'mpo', 'MBI07_g24742_MAGBIO' => 'mbi', 'MBI10_g27988_MAGBIO' => 'mbi', 'MBI11_g13057_MAGBIO' => 'mbi', 'MD02G1137200' => 'mdo', 'MD06G1137200' => 'mdo', 'MD07G1122300' => 'mdo', 'MD09G1078200' => 'mdo', 'MD13G1123700' => 'mdo', 'MD14G1151900' => 'mdo', 'MD17G1030900' => 'mdo', 'MD17G1068200' => 'mdo', 'MD17G1068600' => 'mdo', 'Medtr3g077540' => 'mtr', 'Medtr4g105530' => 'mtr', 'Medtr8g076580' => 'mtr', 'Medtr8g076590' => 'mtr', 'Medtr8g096410' => 'mtr', 'MELO3C016411.2' => 'cme', 'MELO3C017780.2' => 'cme', 'MELO3C022560.2' => 'cme', 'MELO3C026187.2' => 'cme', 'MELO3C026286.2' => 'cme', 'MELO3C032854.2' => 'cme', 'Migut.H02495' => 'egut', 'Migut.I00561' => 'egut', 'Migut.K01015' => 'egut', 'Migut.K01016' => 'egut', 'Migut.L00743' => 'egut', 'Migut.L00744' => 'egut', 'Migut.L00746' => 'egut', 'Migut.L00798' => 'egut', 'Migut.L00799' => 'egut', 'Migut.N02096' => 'egut', 'MSTRG.11259' => 'ama', 'MSTRG.23142' => 'ama', 'MSTRG.2499' => 'ama', 'Nitab4.5_0000003g0730' => 'nta', 'Nitab4.5_0000137g0020' => 'nta', 'Nitab4.5_0000721g0210' => 'nta', 'Nitab4.5_0000723g0050' => 'nta', 'Nitab4.5_0000913g0070' => 'nta', 'Nitab4.5_0001332g0040' => 'nta', 'Nitab4.5_0001771g0050' => 'nta', 'Nitab4.5_0001918g0050' => 'nta', 'Nitab4.5_0002686g0030' => 'nta', 'Nitab4.5_0003156g0020' => 'nta', 'Nitab4.5_0003383g0040' => 'nta', 'Nitab4.5_0003918g0010' => 'nta', 'Nitab4.5_0006760g0010' => 'nta', 'Nn1g05981' => 'nnu', 'Nn1g06288' => 'nnu', 'Nn3g16371' => 'nnu', 'Nn3g16786' => 'nnu', 'Nn4g22232' => 'nnu', 'Oeu005144.1' => 'oeu', 'Oeu005145.1' => 'oeu', 'Oeu011348.1' => 'oeu', 'Oeu016415.1' => 'oeu', 'Oeu023501.1' => 'oeu', 'Oeu044473.1' => 'oeu', 'Oeu048892.2' => 'oeu', 'Os01g0549200' => 'osa', 'Os02g0469300' => 'osa', 'Os04g0311100' => 'osa', 'Os06g0474900' => 'osa', 'Os10g0181700' => 'osa', 'Os11g0454800' => 'osa', 'Peaxi162Scf00037g00714' => 'pax', 'Peaxi162Scf00084g01217' => 'pax', 'Peaxi162Scf00257g00217' => 'pax', 'Peaxi162Scf00516g00215' => 'pax', 'Peaxi162Scf00689g00123' => 'pax', 'PGR044G2719' => 'pgr', 'PGR083G1360' => 'pgr', 'PGR102G2849' => 'pgr', 'PGR119G2534' => 'pgr', 'PGSC0003DMG400003538' => 'stu', 'PGSC0003DMG400028138' => 'stu', 'PGSC0003DMG400031732' => 'stu', 'PGSC0003DMG400038165' => 'stu', 'Phvul.002G284600' => 'pvu', 'Phvul.003G258200' => 'pvu', 'Phvul.009G176500' => 'pvu', 'Potri.003G167201' => 'ptr', 'Potri.005G118400' => 'ptr', 'Potri.012G089000' => 'ptr', 'Potri.012G102800' => 'ptr', 'Potri.015G079400' => 'ptr', 'Potri.015G100900' => 'ptr', 'Pp3c14_9810' => 'ppa', 'Pp3c15_10450' => 'ppa', 'Pp3c20_19150' => 'ppa', 'Pp3c23_12740' => 'ppa', 'Pp3c23_6310' => 'ppa', 'Pp3c24_3720' => 'ppa', 'Pp3c27_2580' => 'ppa', 'Pp3c9_8990' => 'ppa', 'PRCOL_00002854' => 'pco', 'Prupe.1G221200' => 'ppe', 'Prupe.3G289000' => 'ppe', 'Prupe.5G147000' => 'ppe', 'Prupe.6G157300' => 'ppe', 'Prupe.7G163400' => 'ppe', 'Psat0s2177g0040' => 'psa', 'Psat3g174760' => 'psa', 'Psat3g192160' => 'psa', 'Psat4g058520' => 'psa', 'Psat4g096840' => 'psa', 'Psat7g037320' => 'psa', 'PSO017G1274' => 'pso', 'PSO017G5166' => 'pso', 'PSO063G4558' => 'pso', 'PSO170G4458' => 'pso', 'PSO170G5005' => 'pso', 'PSO210G6156' => 'pso', 'PSO210G6635' => 'pso', 'PSO210G7397' => 'pso', 'PSO210G7700' => 'pso', 'PSO455G0035' => 'pso', 'PSO455G0180' => 'pso', 'PSO478G4515' => 'pso', 'PSO832G1305' => 'pso', 'PSO832G3489' => 'pso', 'QL02p075247' => 'qlo', 'QL03p051148' => 'qlo', 'QL05p010313' => 'qlo', 'QL06p034627' => 'qlo', 'QL10p001889' => 'qlo', 'QL10p010846' => 'qlo', 'RcHm_v2.0_Chr1g0350621' => 'rch', 'RcHm_v2.0_Chr1g0350641' => 'rch', 'RcHm_v2.0_Chr2g0092891' => 'rch', 'RcHm_v2.0_Chr2g0100251' => 'rch', 'RcHm_v2.0_Chr2g0158661' => 'rch', 'RcHm_v2.0_Chr2g0172741' => 'rch', 'RcHm_v2.0_Chr4g0429571' => 'rch', 'RcHm_v2.0_Chr5g0042471' => 'rch', 'RcHm_v2.0_Chr7g0189451' => 'rch', 'Rhsim08G0052000' => 'rsi', 'Rhsim08G0174400' => 'rsi', 'Rhsim08G0193200' => 'rsi', 'Rhsim10G0214800' => 'rsi', 'Rhsim10G0214900' => 'rsi', 'Rhsim10G0215000' => 'rsi', 'Rhsim12G0022900' => 'rsi', 'Rhsim12G0177500' => 'rsi', 'Rhsim12G0177700' => 'rsi', 'Sabra03G0122600' => 'sbr', 'Sabra05G0097400' => 'sbr', 'Sabra12G0064100' => 'sbr', 'Sabra15G0121300' => 'sbr', 'SalBow2G0642' => 'sbo', 'SalBow5G2667' => 'sbo', 'SalBow5G4873' => 'sbo', 'SalBow8G2395' => 'sbo', 'Sc03g0003290' => 'sci', 'Sc10g0010130' => 'sci', 'Sc22g0003650' => 'sci', 'Sed0001603' => 'sed', 'Sed0004259' => 'sed', 'Sed0006789' => 'sed', 'Sed0011838' => 'sed', 'Sed0012964' => 'sed', 'Sed0016383' => 'sed', 'Sed0019010' => 'sed', 'Sed0020188' => 'sed', 'SEGI_04702' => 'sgi', 'SEGI_17231' => 'sgi', 'SEGI_18877' => 'sgi', 'SEGI_25196' => 'sgi', 'SEGI_25515' => 'sgi', 'SEGI_28445' => 'sgi', 'SEGI_37452' => 'sgi', 'SGA_v2.0_scaffold188G40336' => 'sas', 'SGA_v2.0_scaffold228G43247' => 'sas', 'SGA_v2.0_scaffold280G46853' => 'sas', 'SGA_v2.0_scaffold34G13808' => 'sas', 'SGA_v2.0_scaffold40G15576' => 'sas', 'SGA_v2.0_scaffold611G53188' => 'sas', 'SGA_v2.0_scaffold78G25461' => 'sas', 'SGA_v2.0_scaffold90G27888' => 'sas', 'SHI08601' => 'shi', 'SHI08606' => 'shi', 'SHI17117' => 'shi', 'SHI17119' => 'shi', 'SMO118G0201' => 'smo', 'SMO169G0247' => 'smo', 'SMO176G0006' => 'smo', 'SMO176G0015' => 'smo', 'SMO202G0006' => 'smo', 'SMO240G0050' => 'smo', 'SMO286G0009' => 'smo', 'SMO338G0033' => 'smo', 'SMO356G0533' => 'smo', 'SMO364G0382' => 'smo', 'SMO367G0166' => 'smo', 'SMO367G1098' => 'smo', 'Solyc01g009920.3' => 'sly', 'Solyc01g099300.3' => 'sly', 'Solyc02g084700.3' => 'sly', 'Solyc03g097520.3' => 'sly', 'Solyc06g071580.3' => 'sly', 'Solyc10g081760.3' => 'sly', 'Sopen01g005480' => 'spe', 'Sopen01g042850' => 'spe', 'Sopen02g029370' => 'spe', 'Sopen03g028280' => 'spe', 'Sopen06g027870' => 'spe', 'Sopen10g032270' => 'spe', 'Sp5g18180' => 'spa', 'Sp6g12880' => 'spa', 'Sp6g30850' => 'spa', 'Sp7g22960' => 'spa', 'Sp7g34010' => 'spa', 'SpUn1326_0010' => 'spa', 'TAR371G0242' => 'tar', 'TAR622G0638' => 'tar', 'TAR628G1548' => 'tar', 'TAR629G1079' => 'tar', 'TAR629G3413' => 'tar', 'THA.LOC104804249' => 'tha', 'THA.LOC104808315' => 'tha', 'THA.LOC104809238' => 'tha', 'THA.LOC104825484' => 'tha', 'Thecc.01G025500' => 'tca', 'Thecc.03G015800' => 'tca', 'Thecc.03G018000' => 'tca', 'Thecc.03G134800' => 'tca', 'Thecc.04G014700' => 'tca', 'Thhalv10006991m.g' => 'esa', 'Thhalv10012707m.g' => 'esa', 'Thhalv10015739m.g' => 'esa', 'Thhalv10024553m.g' => 'esa', 'Thhalv10024673m.g' => 'esa', 'Thhalv10029187m.g' => 'esa', 'TPR.G12971' => 'tpr', 'TPR.G29396' => 'tpr', 'TPR.G33376' => 'tpr', 'TPR.G35508' => 'tpr', 'TPR.G35516' => 'tpr', 'TPR.G37317' => 'tpr', 'TPR.G37389' => 'tpr', 'TPR.G37523' => 'tpr', 'TPR.G559' => 'tpr', 'TWI14G0070' => 'twi', 'TWI14G0729' => 'twi', 'TWI18G0596' => 'twi', 'TWI39G0780' => 'twi', 'TWI39G0850' => 'twi', 'TWI73G1052' => 'twi', 'unitig_52.g17485' => 'ugi', 'unitig_61.g26355' => 'ugi', 'vmacro01040' => 'vma', 'vmacro16731' => 'vma', 'vmacro18270' => 'vma', 'vmacro19142' => 'vma', 'vmacro19407' => 'vma', 'vmacro19408' => 'vma', 'vmacro21899' => 'vma', 'vmacro21900' => 'vma', 'vmacro21901' => 'vma', 'VMungo0251G0490' => 'vmu', 'VMungo0251G1748' => 'vmu', 'VMungo1309G0421' => 'vmu', 'Zm00001eb086500' => 'zma', 'Zm00001eb150680' => 'zma', 'Zm00001eb162330' => 'zma', 'Zm00001eb203130' => 'zma', 'Zm00001eb369480' => 'zma', 'Zm00001eb382340' => 'zma', 'Zm00001eb416360' => 'zma' ) $gf_id = 'HOM05D000902' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000902' ) $data_identifier = 'HOM05D000902' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 13, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 10, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 6, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 9, 'hma' => (int) 12, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 4, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 6, 'ppa' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 6, 'rch' => (int) 9, 'rsi' => (int) 9, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 12, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 3, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416360' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000902', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '663', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02470' => 'bna', 'A01p16260' => 'bna', 'A02p01680' => 'bna', 'A03p16600' => 'bna', 'A03p55660' => 'bna', 'A03p64160' => 'bna', 'A03p64170' => 'bna', 'A08p31900' => 'bna', 'A09p59530' => 'bna', 'A10p08230' => 'bna', 'A10p25090' => 'bna', 'Aa31LG3G7100' => 'aar', 'Aa31LG3G7110' => 'aar', 'Aa31LG6G13160' => 'aar', 'Aa31LG7G10770' => 'aar', 'Aa31LG7G3830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2723' => 'aag', 'Actinidia08045' => 'ach', 'Actinidia08888' => 'ach', 'Actinidia18333' => 'ach', 'Actinidia19334' => 'ach', 'Actinidia25552' => 'ach', 'Actinidia26089' => 'ach', 'Actinidia30615' => 'ach', 'Actinidia30616' => 'ach', 'Actinidia33083' => 'ach', 'Actinidia35762' => 'ach', 'Ah.02g110620' => 'amhyb', 'Ah.11g046390' => 'amhyb', 'AL1G31670' => 'aly', 'AL6G23730' => 'aly', 'AL7G14740' => 'aly', 'AL7G14750' => 'aly', 'AL7G14760' => 'aly', 'AL7G28220' => 'aly', 'AL8G24940' => 'aly', 'Aqoxy3G01665' => 'aox', 'Aqoxy3G02853' => 'aox', 'Aqoxy5G01513' => 'aox', 'Aqoxy5G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8SKA4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ75LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKDA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0LJZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7REX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZP4YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWX7I5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2QKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS0L9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPCD8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q161UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC7XCF' => 'arhy', 'AT1G19100' => 'ath', 'AT4G24970' => 'ath', 'AT4G36270' => 'ath', 'AT4G36280' => 'ath', 'AT4G36290' => 'ath', 'AT5G13130' => 'ath', 'AT5G50780' => 'ath', 'ATR0582G266' => 'atr', 'ATR0661G195' => 'atr', 'ATR1152G031' => 'atr', 'Atru.chr11.2382' => 'acertr', 'Atru.chr12.2337' => 'acertr', 'Atru.chr3.744' => 'acertr', 'Atru.chr6.1870' => 'acertr', 'Atru.chr9.2515' => 'acertr', 'AUR62004120' => 'cqu', 'AUR62005667' => 'cqu', 'AUR62007634' => 'cqu', 'AUR62008186' => 'cqu', 'AUR62008187' => 'cqu', 'AUR62008188' => 'cqu', 'AUR62027954' => 'cqu', 'AUR62028766' => 'cqu', 'AUR62028767' => 'cqu', 'AUR62028768' => 'cqu', 'AUR62028886' => 'cqu', 'AUR62029563' => 'cqu', 'AUR62038832' => 'cqu', 'BcaB01g04149' => 'bca', 'BcaB03g12940' => 'bca', 'BcaB03g13090' => 'bca', 'BcaB03g14466' => 'bca', 'BcaB05g24035' => 'bca', 'BcaC01g06050' => 'bca', 'BcaC04g19148' => 'bca', 'BcaC04g20761' => 'bca', 'BcaC06g32845' => 'bca', 'BcaC07g41274' => 'bca', 'BcaC09g50827' => 'bca', 'BcaNung00741' => 'bca', 'BcaNung00742' => 'bca', 'BcaNung01859' => 'bca', 'BcaNung03985' => 'bca', 'BcaNung03989' => 'bca', 'BcaNung05661' => 'bca', 'BolC1t00257H' => 'bol', 'BolC1t01956H' => 'bol', 'BolC2t06534H' => 'bol', 'BolC3t14334H' => 'bol', 'BolC5t30451H' => 'bol', 'BolC7t45880H' => 'bol', 'BolC7t46586H' => 'bol', 'BolC8t49301H' => 'bol', 'BolC8t51837H' => 'bol', 'BolC9t56822H' => 'bol', 'BolC9t59235H' => 'bol', 'BraA01t00234Z' => 'bra', 'BraA01t01563Z' => 'bra', 'BraA02t05147Z' => 'bra', 'BraA03t10947Z' => 'bra', 'BraA03t14633Z' => 'bra', 'BraA08t35112Z' => 'bra', 'BraA09t41330Z' => 'bra', 'BraA10t44570Z' => 'bra', 'C01p02670' => 'bna', 'C01p20260' => 'bna', 'C02p05890' => 'bna', 'C03p19530' => 'bna', 'C05p17470' => 'bna', 'C07p53900' => 'bna', 'C07p61630' => 'bna', 'C08p16800' => 'bna', 'C08p42810' => 'bna', 'C09p39480' => 'bna', 'C09p63980' => 'bna', 'CAN.G1001.7' => 'can', 'CAN.G1034.55' => 'can', 'CAN.G143.7' => 'can', 'CAN.G3340.1' => 'can', 'CAN.G358.19' => 'can', 'CAN.G373.2' => 'can', 'CAN.G674.16' => 'can', 'CAN.G674.17' => 'can', 'CAN.G674.18' => 'can', 'CAN.G732.2' => 'can', 'CAN.G732.3' => 'can', 'CAN.G993.39' => 'can', 'CANSAT01G2052' => 'cansat', 'CANSAT80G0070' => 'cansat', 'CANSAT80G0483' => 'cansat', 'CANSAT80G0625' => 'cansat', 'CARHR019690' => 'chi', 'CARHR080280' => 'chi', 'CARHR152750' => 'chi', 'CARHR152760' => 'chi', 'CARHR152770' => 'chi', 'CARHR200340' => 'chi', 'CARHR232370' => 'chi', 'CARHR244670' => 'chi', 'CARHR244680' => 'chi', 'CARHR257520' => 'chi', 'Carub.0001s1872' => 'cru', 'Carub.0006s1130' => 'cru', 'Carub.0007s0396' => 'cru', 'Carub.0007s0397' => 'cru', 'Carub.0007s1608' => 'cru', 'Carub.0008s1068' => 'cru', 'Carub.0008s1077' => 'cru', 'Ca_16158_v3' => 'car', 'Ca_17571_v3' => 'car', 'Ca_21936_v3' => 'car', 'Ca_22350_v3' => 'car', 'CBR_g22445' => 'cbr', 'CBR_g26290' => 'cbr', 'Cc04_g09610' => 'ccan', 'Cc04_g12280' => 'ccan', 'Cc07_g10230' => 'ccan', 'CDE02G0093' => 'cde', 'CDE02G0701' => 'cde', 'CDE04G1050' => 'cde', 'CDE05G1833' => 'cde', 'CDE05G3058' => 'cde', 'CDE05G3380' => 'cde', 'CDE06G0536' => 'cde', 'Cfa006923' => 'cfa', 'Cfa009402' => 'cfa', 'Cfa018751' => 'cfa', 'Cfa019164' => 'cfa', 'Cfa022935' => 'cfa', 'Ciclev10019081m.g' => 'ccl', 'Ciclev10025076m.g' => 'ccl', 'Ciclev10030712m.g' => 'ccl', 'Ciclev10033760m.g' => 'ccl', 'CiPaw.05G105600' => 'cil', 'CiPaw.08G136700' => 'cil', 'CiPaw.11G003900' => 'cil', 'CiPaw.11G023700' => 'cil', 'CiPaw.12G003700' => 'cil', 'ClCG06G017100' => 'cla', 'ClCG06G018110' => 'cla', 'ClCG07G008800' => 'cla', 'ClCG07G015330' => 'cla', 'COL.COLO4_13698' => 'col', 'COL.COLO4_16659' => 'col', 'COL.COLO4_21986' => 'col', 'COL.COLO4_24049' => 'col', 'COL.COLO4_29061' => 'col', 'COL.COLO4_29075' => 'col', 'COL.COLO4_30094' => 'col', 'Cpa.g.c33689' => 'cpa', 'Cpa.g.sc108.39' => 'cpa', 'Cpa.g.sc108.41' => 'cpa', 'Cpa.g.sc1163.1' => 'cpa', 'Cpa.g.sc4.155' => 'cpa', 'Cpa.g.sc6.194' => 'cpa', 'CsaV3_1G000340' => 'csa', 'CsaV3_1G001400' => 'csa', 'CsaV3_4G002220' => 'csa', 'CsaV3_4G005370' => 'csa', 'CSS0007487' => 'camsi', 'CSS0008066' => 'camsi', 'CSS0009120' => 'camsi', 'CSS0015512' => 'camsi', 'CSS0022409' => 'camsi', 'CSS0025358' => 'camsi', 'CSS0044547' => 'camsi', 'DCAR_013057' => 'dca', 'DCAR_015058' => 'dca', 'DCAR_016027' => 'dca', 'DCAR_017327' => 'dca', 'DCAR_020743' => 'dca', 'DCAR_026157' => 'dca', 'DCAR_032339' => 'dca', 'DCAR_032340' => 'dca', 'Dinv11200' => 'din', 'Dinv11201' => 'din', 'Dinv20631' => 'din', 'Dinv23182' => 'din', 'Dinv33466' => 'din', 'Dinv33583' => 'din', 'Dinv38565' => 'din', 'Duzib068G0200' => 'dzi', 'Duzib147G0132' => 'dzi', 'Duzib147G0635' => 'dzi', 'Duzib205G1670' => 'dzi', 'Duzib251G0606' => 'dzi', 'ECA232G3336' => 'eca', 'ECA232G3763' => 'eca', 'ECA232G4845' => 'eca', 'ECA234G1607' => 'eca', 'ECA246G0932' => 'eca', 'ECA247G0781' => 'eca', 'ECA247G1932' => 'eca', 'ECA247G2079' => 'eca', 'ECA247G3338' => 'eca', 'ECA247G4115' => 'eca', 'EL10Ac3g06552' => 'bvu', 'EL10Ac5g10721' => 'bvu', 'EL10Ac5g10722' => 'bvu', 'EL10Ac5g10723' => 'bvu', 'EL10Ac5g11361' => 'bvu', 'EL10Ac6g13553' => 'bvu', 'EL10As8g23872' => 'bvu', 'Eucgr.B00250' => 'egr', 'Eucgr.B00251' => 'egr', 'Eucgr.B03533' => 'egr', 'Eucgr.I02381' => 'egr', 'Eucgr.K02700' => 'egr', 'FAN02G0174' => 'fan', 'FAN02G3146' => 'fan', 'FAN04G1672' => 'fan', 'FAN04G2273' => 'fan', 'FAN05G2791' => 'fan', 'FAN05G4035' => 'fan', 'FAN07G0834' => 'fan', 'FAN08G1198' => 'fan', 'FAN09G4182' => 'fan', 'FAN12G0496' => 'fan', 'FAN13G1027' => 'fan', 'FAN13G2951' => 'fan', 'FAN14G0705' => 'fan', 'FAN14G0720' => 'fan', 'FAN17G0201' => 'fan', 'FAN17G2665' => 'fan', 'FAN18G1456' => 'fan', 'FAN18G1525' => 'fan', 'FAN18G3500' => 'fan', 'FAN28G2670' => 'fan', 'FvH4_1g12391' => 'fve', 'FvH4_4g23220' => 'fve', 'FvH4_5g08810' => 'fve', 'FvH4_5g28960' => 'fve', 'FvH4_6g42820' => 'fve', 'FvH4_6g51110' => 'fve', 'Glyma.02G051802' => 'gma', 'Glyma.04G185300' => 'gma', 'Glyma.05G202900' => 'gma', 'Glyma.08G010300' => 'gma', 'Glyma.16G131900' => 'gma', 'Glyma.17G087900' => 'gma', 'Gohir.A07G048600' => 'ghi', 'Gohir.A11G179000' => 'ghi', 'Gohir.A12G140900' => 'ghi', 'Gohir.A12G140950' => 'ghi', 'Gohir.A12G191700' => 'ghi', 'Gohir.A13G086300' => 'ghi', 'Gohir.D07G052900' => 'ghi', 'Gohir.D11G186600' => 'ghi', 'Gohir.D12G145575' => 'ghi', 'Gohir.D12G145650' => 'ghi', 'Gohir.D12G145725' => 'ghi', 'Gohir.D12G194050' => 'ghi', 'Gohir.D13G091800' => 'ghi', 'Gorai.001G055900' => 'gra', 'Gorai.007G198400' => 'gra', 'Gorai.008G157000' => 'gra', 'Gorai.008G157100' => 'gra', 'Gorai.008G208700' => 'gra', 'Gorai.010G138700' => 'gra', 'GSVIVG01000977001' => 'vvi', 'GSVIVG01007708001' => 'vvi', 'GSVIVG01008587001' => 'vvi', 'GSVIVG01018849001' => 'vvi', 'GSVIVG01032432001' => 'vvi', 'HanXRQChr02g0034131' => 'han', 'HanXRQChr02g0035981' => 'han', 'HanXRQChr02g0035991' => 'han', 'HanXRQChr05g0155611' => 'han', 'HanXRQChr05g0155621' => 'han', 'HanXRQChr08g0236501' => 'han', 'HanXRQChr09g0261321' => 'han', 'HanXRQChr09g0272081' => 'han', 'HanXRQChr10g0310741' => 'han', 'HanXRQChr11g0325591' => 'han', 'HanXRQChr12g0385691' => 'han', 'HanXRQChr13g0387801' => 'han', 'HanXRQChr15g0463011' => 'han', 'Haze_03826' => 'cav', 'Haze_03827' => 'cav', 'Haze_07183' => 'cav', 'Haze_07537' => 'cav', 'Haze_07539' => 'cav', 'Haze_12461' => 'cav', 'Haze_16115' => 'cav', 'Haze_16808' => 'cav', 'Haze_18531' => 'cav', 'Hma1.2p1_0046F.1_g026700' => 'hma', 'Hma1.2p1_0046F.1_g026710' => 'hma', 'Hma1.2p1_0168F.1_g074340' => 'hma', 'Hma1.2p1_0266F.1_g107030' => 'hma', 'Hma1.2p1_0266F.1_g107060' => 'hma', 'Hma1.2p1_0275F.1_g110510' => 'hma', 'Hma1.2p1_0592F.1_g185490' => 'hma', 'Hma1.2p1_0592F.1_g185500' => 'hma', 'Hma1.2p1_0592F.1_g185510' => 'hma', 'Hma1.2p1_0592F.1_g185520' => 'hma', 'Hma1.2p1_0592F.1_g185530' => 'hma', 'Hma1.2p1_0818F.1_g223450' => 'hma', 'HPP92_009708' => 'vpl', 'HPP92_009793' => 'vpl', 'HPP92_009796' => 'vpl', 'HPP92_009797' => 'vpl', 'HPP92_014940' => 'vpl', 'HPP92_014988' => 'vpl', 'Hund02463' => 'sun', 'Hund02760' => 'sun', 'Hund05071' => 'sun', 'Hund10108' => 'sun', 'Hund11204' => 'sun', 'Hund14016' => 'sun', 'Hund16464' => 'sun', 'Lalb_Chr09g0333391' => 'lal', 'Lalb_Chr11g0070461' => 'lal', 'Lalb_Chr12g0201671' => 'lal', 'Lalb_Chr13g0297161' => 'lal', 'Lj1g0002823' => 'lja', 'Lj3C1074T6' => 'lonja', 'Lj4A212T28' => 'lonja', 'Lj4g0005516' => 'lja', 'Lj4g0013705' => 'lja', 'Lj4g0027865' => 'lja', 'Lj5C92G16' => 'lonja', 'Lj5C92T12' => 'lonja', 'Lj7C596T3' => 'lonja', 'Lj9A446G59' => 'lonja', 'Lj9A482G21' => 'lonja', 'Lsat_1_v5_gn_1_28261' => 'lsa', 'Lsat_1_v5_gn_1_28281' => 'lsa', 'Lsat_1_v5_gn_1_32721' => 'lsa', 'Lsat_1_v5_gn_4_151760' => 'lsa', 'Lsat_1_v5_gn_4_2120' => 'lsa', 'Lsat_1_v5_gn_4_75761' => 'lsa', 'Lsat_1_v5_gn_5_10920' => 'lsa', 'Manes.02G099900' => 'mes', 'Manes.11G096200' => 'mes', 'Manes.12G007200' => 'mes', 'Manes.14G048300' => 'mes', 'Manes.17G114700' => 'mes', 'Mapoly0002s0070' => 'mpo', 'Mapoly0029s0099' => 'mpo', 'MBI07_g24742_MAGBIO' => 'mbi', 'MBI10_g27988_MAGBIO' => 'mbi', 'MBI11_g13057_MAGBIO' => 'mbi', 'MD02G1137200' => 'mdo', 'MD06G1137200' => 'mdo', 'MD07G1122300' => 'mdo', 'MD09G1078200' => 'mdo', 'MD13G1123700' => 'mdo', 'MD14G1151900' => 'mdo', 'MD17G1030900' => 'mdo', 'MD17G1068200' => 'mdo', 'MD17G1068600' => 'mdo', 'Medtr3g077540' => 'mtr', 'Medtr4g105530' => 'mtr', 'Medtr8g076580' => 'mtr', 'Medtr8g076590' => 'mtr', 'Medtr8g096410' => 'mtr', 'MELO3C016411.2' => 'cme', 'MELO3C017780.2' => 'cme', 'MELO3C022560.2' => 'cme', 'MELO3C026187.2' => 'cme', 'MELO3C026286.2' => 'cme', 'MELO3C032854.2' => 'cme', 'Migut.H02495' => 'egut', 'Migut.I00561' => 'egut', 'Migut.K01015' => 'egut', 'Migut.K01016' => 'egut', 'Migut.L00743' => 'egut', 'Migut.L00744' => 'egut', 'Migut.L00746' => 'egut', 'Migut.L00798' => 'egut', 'Migut.L00799' => 'egut', 'Migut.N02096' => 'egut', 'MSTRG.11259' => 'ama', 'MSTRG.23142' => 'ama', 'MSTRG.2499' => 'ama', 'Nitab4.5_0000003g0730' => 'nta', 'Nitab4.5_0000137g0020' => 'nta', 'Nitab4.5_0000721g0210' => 'nta', 'Nitab4.5_0000723g0050' => 'nta', 'Nitab4.5_0000913g0070' => 'nta', 'Nitab4.5_0001332g0040' => 'nta', 'Nitab4.5_0001771g0050' => 'nta', 'Nitab4.5_0001918g0050' => 'nta', 'Nitab4.5_0002686g0030' => 'nta', 'Nitab4.5_0003156g0020' => 'nta', 'Nitab4.5_0003383g0040' => 'nta', 'Nitab4.5_0003918g0010' => 'nta', 'Nitab4.5_0006760g0010' => 'nta', 'Nn1g05981' => 'nnu', 'Nn1g06288' => 'nnu', 'Nn3g16371' => 'nnu', 'Nn3g16786' => 'nnu', 'Nn4g22232' => 'nnu', 'Oeu005144.1' => 'oeu', 'Oeu005145.1' => 'oeu', 'Oeu011348.1' => 'oeu', 'Oeu016415.1' => 'oeu', 'Oeu023501.1' => 'oeu', 'Oeu044473.1' => 'oeu', 'Oeu048892.2' => 'oeu', 'Os01g0549200' => 'osa', 'Os02g0469300' => 'osa', 'Os04g0311100' => 'osa', 'Os06g0474900' => 'osa', 'Os10g0181700' => 'osa', 'Os11g0454800' => 'osa', 'Peaxi162Scf00037g00714' => 'pax', 'Peaxi162Scf00084g01217' => 'pax', 'Peaxi162Scf00257g00217' => 'pax', 'Peaxi162Scf00516g00215' => 'pax', 'Peaxi162Scf00689g00123' => 'pax', 'PGR044G2719' => 'pgr', 'PGR083G1360' => 'pgr', 'PGR102G2849' => 'pgr', 'PGR119G2534' => 'pgr', 'PGSC0003DMG400003538' => 'stu', 'PGSC0003DMG400028138' => 'stu', 'PGSC0003DMG400031732' => 'stu', 'PGSC0003DMG400038165' => 'stu', 'Phvul.002G284600' => 'pvu', 'Phvul.003G258200' => 'pvu', 'Phvul.009G176500' => 'pvu', 'Potri.003G167201' => 'ptr', 'Potri.005G118400' => 'ptr', 'Potri.012G089000' => 'ptr', 'Potri.012G102800' => 'ptr', 'Potri.015G079400' => 'ptr', 'Potri.015G100900' => 'ptr', 'Pp3c14_9810' => 'ppa', 'Pp3c15_10450' => 'ppa', 'Pp3c20_19150' => 'ppa', 'Pp3c23_12740' => 'ppa', 'Pp3c23_6310' => 'ppa', 'Pp3c24_3720' => 'ppa', 'Pp3c27_2580' => 'ppa', 'Pp3c9_8990' => 'ppa', 'PRCOL_00002854' => 'pco', 'Prupe.1G221200' => 'ppe', 'Prupe.3G289000' => 'ppe', 'Prupe.5G147000' => 'ppe', 'Prupe.6G157300' => 'ppe', 'Prupe.7G163400' => 'ppe', 'Psat0s2177g0040' => 'psa', 'Psat3g174760' => 'psa', 'Psat3g192160' => 'psa', 'Psat4g058520' => 'psa', 'Psat4g096840' => 'psa', 'Psat7g037320' => 'psa', 'PSO017G1274' => 'pso', 'PSO017G5166' => 'pso', 'PSO063G4558' => 'pso', 'PSO170G4458' => 'pso', 'PSO170G5005' => 'pso', 'PSO210G6156' => 'pso', 'PSO210G6635' => 'pso', 'PSO210G7397' => 'pso', 'PSO210G7700' => 'pso', 'PSO455G0035' => 'pso', 'PSO455G0180' => 'pso', 'PSO478G4515' => 'pso', 'PSO832G1305' => 'pso', 'PSO832G3489' => 'pso', 'QL02p075247' => 'qlo', 'QL03p051148' => 'qlo', 'QL05p010313' => 'qlo', 'QL06p034627' => 'qlo', 'QL10p001889' => 'qlo', 'QL10p010846' => 'qlo', 'RcHm_v2.0_Chr1g0350621' => 'rch', 'RcHm_v2.0_Chr1g0350641' => 'rch', 'RcHm_v2.0_Chr2g0092891' => 'rch', 'RcHm_v2.0_Chr2g0100251' => 'rch', 'RcHm_v2.0_Chr2g0158661' => 'rch', 'RcHm_v2.0_Chr2g0172741' => 'rch', 'RcHm_v2.0_Chr4g0429571' => 'rch', 'RcHm_v2.0_Chr5g0042471' => 'rch', 'RcHm_v2.0_Chr7g0189451' => 'rch', 'Rhsim08G0052000' => 'rsi', 'Rhsim08G0174400' => 'rsi', 'Rhsim08G0193200' => 'rsi', 'Rhsim10G0214800' => 'rsi', 'Rhsim10G0214900' => 'rsi', 'Rhsim10G0215000' => 'rsi', 'Rhsim12G0022900' => 'rsi', 'Rhsim12G0177500' => 'rsi', 'Rhsim12G0177700' => 'rsi', 'Sabra03G0122600' => 'sbr', 'Sabra05G0097400' => 'sbr', 'Sabra12G0064100' => 'sbr', 'Sabra15G0121300' => 'sbr', 'SalBow2G0642' => 'sbo', 'SalBow5G2667' => 'sbo', 'SalBow5G4873' => 'sbo', 'SalBow8G2395' => 'sbo', 'Sc03g0003290' => 'sci', 'Sc10g0010130' => 'sci', 'Sc22g0003650' => 'sci', 'Sed0001603' => 'sed', 'Sed0004259' => 'sed', 'Sed0006789' => 'sed', 'Sed0011838' => 'sed', 'Sed0012964' => 'sed', 'Sed0016383' => 'sed', 'Sed0019010' => 'sed', 'Sed0020188' => 'sed', 'SEGI_04702' => 'sgi', 'SEGI_17231' => 'sgi', 'SEGI_18877' => 'sgi', 'SEGI_25196' => 'sgi', 'SEGI_25515' => 'sgi', 'SEGI_28445' => 'sgi', 'SEGI_37452' => 'sgi', 'SGA_v2.0_scaffold188G40336' => 'sas', 'SGA_v2.0_scaffold228G43247' => 'sas', 'SGA_v2.0_scaffold280G46853' => 'sas', 'SGA_v2.0_scaffold34G13808' => 'sas', 'SGA_v2.0_scaffold40G15576' => 'sas', 'SGA_v2.0_scaffold611G53188' => 'sas', 'SGA_v2.0_scaffold78G25461' => 'sas', 'SGA_v2.0_scaffold90G27888' => 'sas', 'SHI08601' => 'shi', 'SHI08606' => 'shi', 'SHI17117' => 'shi', 'SHI17119' => 'shi', 'SMO118G0201' => 'smo', 'SMO169G0247' => 'smo', 'SMO176G0006' => 'smo', 'SMO176G0015' => 'smo', 'SMO202G0006' => 'smo', 'SMO240G0050' => 'smo', 'SMO286G0009' => 'smo', 'SMO338G0033' => 'smo', 'SMO356G0533' => 'smo', 'SMO364G0382' => 'smo', 'SMO367G0166' => 'smo', 'SMO367G1098' => 'smo', 'Solyc01g009920.3' => 'sly', 'Solyc01g099300.3' => 'sly', 'Solyc02g084700.3' => 'sly', 'Solyc03g097520.3' => 'sly', 'Solyc06g071580.3' => 'sly', 'Solyc10g081760.3' => 'sly', 'Sopen01g005480' => 'spe', 'Sopen01g042850' => 'spe', 'Sopen02g029370' => 'spe', 'Sopen03g028280' => 'spe', 'Sopen06g027870' => 'spe', 'Sopen10g032270' => 'spe', 'Sp5g18180' => 'spa', 'Sp6g12880' => 'spa', 'Sp6g30850' => 'spa', 'Sp7g22960' => 'spa', 'Sp7g34010' => 'spa', 'SpUn1326_0010' => 'spa', 'TAR371G0242' => 'tar', 'TAR622G0638' => 'tar', 'TAR628G1548' => 'tar', 'TAR629G1079' => 'tar', 'TAR629G3413' => 'tar', 'THA.LOC104804249' => 'tha', 'THA.LOC104808315' => 'tha', 'THA.LOC104809238' => 'tha', 'THA.LOC104825484' => 'tha', 'Thecc.01G025500' => 'tca', 'Thecc.03G015800' => 'tca', 'Thecc.03G018000' => 'tca', 'Thecc.03G134800' => 'tca', 'Thecc.04G014700' => 'tca', 'Thhalv10006991m.g' => 'esa', 'Thhalv10012707m.g' => 'esa', 'Thhalv10015739m.g' => 'esa', 'Thhalv10024553m.g' => 'esa', 'Thhalv10024673m.g' => 'esa', 'Thhalv10029187m.g' => 'esa', 'TPR.G12971' => 'tpr', 'TPR.G29396' => 'tpr', 'TPR.G33376' => 'tpr', 'TPR.G35508' => 'tpr', 'TPR.G35516' => 'tpr', 'TPR.G37317' => 'tpr', 'TPR.G37389' => 'tpr', 'TPR.G37523' => 'tpr', 'TPR.G559' => 'tpr', 'TWI14G0070' => 'twi', 'TWI14G0729' => 'twi', 'TWI18G0596' => 'twi', 'TWI39G0780' => 'twi', 'TWI39G0850' => 'twi', 'TWI73G1052' => 'twi', 'unitig_52.g17485' => 'ugi', 'unitig_61.g26355' => 'ugi', 'vmacro01040' => 'vma', 'vmacro16731' => 'vma', 'vmacro18270' => 'vma', 'vmacro19142' => 'vma', 'vmacro19407' => 'vma', 'vmacro19408' => 'vma', 'vmacro21899' => 'vma', 'vmacro21900' => 'vma', 'vmacro21901' => 'vma', 'VMungo0251G0490' => 'vmu', 'VMungo0251G1748' => 'vmu', 'VMungo1309G0421' => 'vmu', 'Zm00001eb086500' => 'zma', 'Zm00001eb150680' => 'zma', 'Zm00001eb162330' => 'zma', 'Zm00001eb203130' => 'zma', 'Zm00001eb369480' => 'zma', 'Zm00001eb382340' => 'zma', 'Zm00001eb416360' => 'zma' ), 'gf_id' => 'HOM05D000902', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000902' ), 'data_identifier' => 'HOM05D000902', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000902', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '663', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02470' => 'bna', 'A01p16260' => 'bna', 'A02p01680' => 'bna', 'A03p16600' => 'bna', 'A03p55660' => 'bna', 'A03p64160' => 'bna', 'A03p64170' => 'bna', 'A08p31900' => 'bna', 'A09p59530' => 'bna', 'A10p08230' => 'bna', 'A10p25090' => 'bna', 'Aa31LG3G7100' => 'aar', 'Aa31LG3G7110' => 'aar', 'Aa31LG6G13160' => 'aar', 'Aa31LG7G10770' => 'aar', 'Aa31LG7G3830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2723' => 'aag', 'Actinidia08045' => 'ach', 'Actinidia08888' => 'ach', 'Actinidia18333' => 'ach', 'Actinidia19334' => 'ach', 'Actinidia25552' => 'ach', 'Actinidia26089' => 'ach', 'Actinidia30615' => 'ach', 'Actinidia30616' => 'ach', 'Actinidia33083' => 'ach', 'Actinidia35762' => 'ach', 'Ah.02g110620' => 'amhyb', 'Ah.11g046390' => 'amhyb', 'AL1G31670' => 'aly', 'AL6G23730' => 'aly', 'AL7G14740' => 'aly', 'AL7G14750' => 'aly', 'AL7G14760' => 'aly', 'AL7G28220' => 'aly', 'AL8G24940' => 'aly', 'Aqoxy3G01665' => 'aox', 'Aqoxy3G02853' => 'aox', 'Aqoxy5G01513' => 'aox', 'Aqoxy5G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8SKA4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ75LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKDA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0LJZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7REX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZP4YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWX7I5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2QKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS0L9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPCD8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q161UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC7XCF' => 'arhy', 'AT1G19100' => 'ath', 'AT4G24970' => 'ath', 'AT4G36270' => 'ath', 'AT4G36280' => 'ath', 'AT4G36290' => 'ath', 'AT5G13130' => 'ath', 'AT5G50780' => 'ath', 'ATR0582G266' => 'atr', 'ATR0661G195' => 'atr', 'ATR1152G031' => 'atr', 'Atru.chr11.2382' => 'acertr', 'Atru.chr12.2337' => 'acertr', 'Atru.chr3.744' => 'acertr', 'Atru.chr6.1870' => 'acertr', 'Atru.chr9.2515' => 'acertr', 'AUR62004120' => 'cqu', 'AUR62005667' => 'cqu', 'AUR62007634' => 'cqu', 'AUR62008186' => 'cqu', 'AUR62008187' => 'cqu', 'AUR62008188' => 'cqu', 'AUR62027954' => 'cqu', 'AUR62028766' => 'cqu', 'AUR62028767' => 'cqu', 'AUR62028768' => 'cqu', 'AUR62028886' => 'cqu', 'AUR62029563' => 'cqu', 'AUR62038832' => 'cqu', 'BcaB01g04149' => 'bca', 'BcaB03g12940' => 'bca', 'BcaB03g13090' => 'bca', 'BcaB03g14466' => 'bca', 'BcaB05g24035' => 'bca', 'BcaC01g06050' => 'bca', 'BcaC04g19148' => 'bca', 'BcaC04g20761' => 'bca', 'BcaC06g32845' => 'bca', 'BcaC07g41274' => 'bca', 'BcaC09g50827' => 'bca', 'BcaNung00741' => 'bca', 'BcaNung00742' => 'bca', 'BcaNung01859' => 'bca', 'BcaNung03985' => 'bca', 'BcaNung03989' => 'bca', 'BcaNung05661' => 'bca', 'BolC1t00257H' => 'bol', 'BolC1t01956H' => 'bol', 'BolC2t06534H' => 'bol', 'BolC3t14334H' => 'bol', 'BolC5t30451H' => 'bol', 'BolC7t45880H' => 'bol', 'BolC7t46586H' => 'bol', 'BolC8t49301H' => 'bol', 'BolC8t51837H' => 'bol', 'BolC9t56822H' => 'bol', 'BolC9t59235H' => 'bol', 'BraA01t00234Z' => 'bra', 'BraA01t01563Z' => 'bra', 'BraA02t05147Z' => 'bra', 'BraA03t10947Z' => 'bra', 'BraA03t14633Z' => 'bra', 'BraA08t35112Z' => 'bra', 'BraA09t41330Z' => 'bra', 'BraA10t44570Z' => 'bra', 'C01p02670' => 'bna', 'C01p20260' => 'bna', 'C02p05890' => 'bna', 'C03p19530' => 'bna', 'C05p17470' => 'bna', 'C07p53900' => 'bna', 'C07p61630' => 'bna', 'C08p16800' => 'bna', 'C08p42810' => 'bna', 'C09p39480' => 'bna', 'C09p63980' => 'bna', 'CAN.G1001.7' => 'can', 'CAN.G1034.55' => 'can', 'CAN.G143.7' => 'can', 'CAN.G3340.1' => 'can', 'CAN.G358.19' => 'can', 'CAN.G373.2' => 'can', 'CAN.G674.16' => 'can', 'CAN.G674.17' => 'can', 'CAN.G674.18' => 'can', 'CAN.G732.2' => 'can', 'CAN.G732.3' => 'can', 'CAN.G993.39' => 'can', 'CANSAT01G2052' => 'cansat', 'CANSAT80G0070' => 'cansat', 'CANSAT80G0483' => 'cansat', 'CANSAT80G0625' => 'cansat', 'CARHR019690' => 'chi', 'CARHR080280' => 'chi', 'CARHR152750' => 'chi', 'CARHR152760' => 'chi', 'CARHR152770' => 'chi', 'CARHR200340' => 'chi', 'CARHR232370' => 'chi', 'CARHR244670' => 'chi', 'CARHR244680' => 'chi', 'CARHR257520' => 'chi', 'Carub.0001s1872' => 'cru', 'Carub.0006s1130' => 'cru', 'Carub.0007s0396' => 'cru', 'Carub.0007s0397' => 'cru', 'Carub.0007s1608' => 'cru', 'Carub.0008s1068' => 'cru', 'Carub.0008s1077' => 'cru', 'Ca_16158_v3' => 'car', 'Ca_17571_v3' => 'car', 'Ca_21936_v3' => 'car', 'Ca_22350_v3' => 'car', 'CBR_g22445' => 'cbr', 'CBR_g26290' => 'cbr', 'Cc04_g09610' => 'ccan', 'Cc04_g12280' => 'ccan', 'Cc07_g10230' => 'ccan', 'CDE02G0093' => 'cde', 'CDE02G0701' => 'cde', 'CDE04G1050' => 'cde', 'CDE05G1833' => 'cde', 'CDE05G3058' => 'cde', 'CDE05G3380' => 'cde', 'CDE06G0536' => 'cde', 'Cfa006923' => 'cfa', 'Cfa009402' => 'cfa', 'Cfa018751' => 'cfa', 'Cfa019164' => 'cfa', 'Cfa022935' => 'cfa', 'Ciclev10019081m.g' => 'ccl', 'Ciclev10025076m.g' => 'ccl', 'Ciclev10030712m.g' => 'ccl', 'Ciclev10033760m.g' => 'ccl', 'CiPaw.05G105600' => 'cil', 'CiPaw.08G136700' => 'cil', 'CiPaw.11G003900' => 'cil', 'CiPaw.11G023700' => 'cil', 'CiPaw.12G003700' => 'cil', 'ClCG06G017100' => 'cla', 'ClCG06G018110' => 'cla', 'ClCG07G008800' => 'cla', 'ClCG07G015330' => 'cla', 'COL.COLO4_13698' => 'col', 'COL.COLO4_16659' => 'col', 'COL.COLO4_21986' => 'col', 'COL.COLO4_24049' => 'col', 'COL.COLO4_29061' => 'col', 'COL.COLO4_29075' => 'col', 'COL.COLO4_30094' => 'col', 'Cpa.g.c33689' => 'cpa', 'Cpa.g.sc108.39' => 'cpa', 'Cpa.g.sc108.41' => 'cpa', 'Cpa.g.sc1163.1' => 'cpa', 'Cpa.g.sc4.155' => 'cpa', 'Cpa.g.sc6.194' => 'cpa', 'CsaV3_1G000340' => 'csa', 'CsaV3_1G001400' => 'csa', 'CsaV3_4G002220' => 'csa', 'CsaV3_4G005370' => 'csa', 'CSS0007487' => 'camsi', 'CSS0008066' => 'camsi', 'CSS0009120' => 'camsi', 'CSS0015512' => 'camsi', 'CSS0022409' => 'camsi', 'CSS0025358' => 'camsi', 'CSS0044547' => 'camsi', 'DCAR_013057' => 'dca', 'DCAR_015058' => 'dca', 'DCAR_016027' => 'dca', 'DCAR_017327' => 'dca', 'DCAR_020743' => 'dca', 'DCAR_026157' => 'dca', 'DCAR_032339' => 'dca', 'DCAR_032340' => 'dca', 'Dinv11200' => 'din', 'Dinv11201' => 'din', 'Dinv20631' => 'din', 'Dinv23182' => 'din', 'Dinv33466' => 'din', 'Dinv33583' => 'din', 'Dinv38565' => 'din', 'Duzib068G0200' => 'dzi', 'Duzib147G0132' => 'dzi', 'Duzib147G0635' => 'dzi', 'Duzib205G1670' => 'dzi', 'Duzib251G0606' => 'dzi', 'ECA232G3336' => 'eca', 'ECA232G3763' => 'eca', 'ECA232G4845' => 'eca', 'ECA234G1607' => 'eca', 'ECA246G0932' => 'eca', 'ECA247G0781' => 'eca', 'ECA247G1932' => 'eca', 'ECA247G2079' => 'eca', 'ECA247G3338' => 'eca', 'ECA247G4115' => 'eca', 'EL10Ac3g06552' => 'bvu', 'EL10Ac5g10721' => 'bvu', 'EL10Ac5g10722' => 'bvu', 'EL10Ac5g10723' => 'bvu', 'EL10Ac5g11361' => 'bvu', 'EL10Ac6g13553' => 'bvu', 'EL10As8g23872' => 'bvu', 'Eucgr.B00250' => 'egr', 'Eucgr.B00251' => 'egr', 'Eucgr.B03533' => 'egr', 'Eucgr.I02381' => 'egr', 'Eucgr.K02700' => 'egr', 'FAN02G0174' => 'fan', 'FAN02G3146' => 'fan', 'FAN04G1672' => 'fan', 'FAN04G2273' => 'fan', 'FAN05G2791' => 'fan', 'FAN05G4035' => 'fan', 'FAN07G0834' => 'fan', 'FAN08G1198' => 'fan', 'FAN09G4182' => 'fan', 'FAN12G0496' => 'fan', 'FAN13G1027' => 'fan', 'FAN13G2951' => 'fan', 'FAN14G0705' => 'fan', 'FAN14G0720' => 'fan', 'FAN17G0201' => 'fan', 'FAN17G2665' => 'fan', 'FAN18G1456' => 'fan', 'FAN18G1525' => 'fan', 'FAN18G3500' => 'fan', 'FAN28G2670' => 'fan', 'FvH4_1g12391' => 'fve', 'FvH4_4g23220' => 'fve', 'FvH4_5g08810' => 'fve', 'FvH4_5g28960' => 'fve', 'FvH4_6g42820' => 'fve', 'FvH4_6g51110' => 'fve', 'Glyma.02G051802' => 'gma', 'Glyma.04G185300' => 'gma', 'Glyma.05G202900' => 'gma', 'Glyma.08G010300' => 'gma', 'Glyma.16G131900' => 'gma', 'Glyma.17G087900' => 'gma', 'Gohir.A07G048600' => 'ghi', 'Gohir.A11G179000' => 'ghi', 'Gohir.A12G140900' => 'ghi', 'Gohir.A12G140950' => 'ghi', 'Gohir.A12G191700' => 'ghi', 'Gohir.A13G086300' => 'ghi', 'Gohir.D07G052900' => 'ghi', 'Gohir.D11G186600' => 'ghi', 'Gohir.D12G145575' => 'ghi', 'Gohir.D12G145650' => 'ghi', 'Gohir.D12G145725' => 'ghi', 'Gohir.D12G194050' => 'ghi', 'Gohir.D13G091800' => 'ghi', 'Gorai.001G055900' => 'gra', 'Gorai.007G198400' => 'gra', 'Gorai.008G157000' => 'gra', 'Gorai.008G157100' => 'gra', 'Gorai.008G208700' => 'gra', 'Gorai.010G138700' => 'gra', 'GSVIVG01000977001' => 'vvi', 'GSVIVG01007708001' => 'vvi', 'GSVIVG01008587001' => 'vvi', 'GSVIVG01018849001' => 'vvi', 'GSVIVG01032432001' => 'vvi', 'HanXRQChr02g0034131' => 'han', 'HanXRQChr02g0035981' => 'han', 'HanXRQChr02g0035991' => 'han', 'HanXRQChr05g0155611' => 'han', 'HanXRQChr05g0155621' => 'han', 'HanXRQChr08g0236501' => 'han', 'HanXRQChr09g0261321' => 'han', 'HanXRQChr09g0272081' => 'han', 'HanXRQChr10g0310741' => 'han', 'HanXRQChr11g0325591' => 'han', 'HanXRQChr12g0385691' => 'han', 'HanXRQChr13g0387801' => 'han', 'HanXRQChr15g0463011' => 'han', 'Haze_03826' => 'cav', 'Haze_03827' => 'cav', 'Haze_07183' => 'cav', 'Haze_07537' => 'cav', 'Haze_07539' => 'cav', 'Haze_12461' => 'cav', 'Haze_16115' => 'cav', 'Haze_16808' => 'cav', 'Haze_18531' => 'cav', 'Hma1.2p1_0046F.1_g026700' => 'hma', 'Hma1.2p1_0046F.1_g026710' => 'hma', 'Hma1.2p1_0168F.1_g074340' => 'hma', 'Hma1.2p1_0266F.1_g107030' => 'hma', 'Hma1.2p1_0266F.1_g107060' => 'hma', 'Hma1.2p1_0275F.1_g110510' => 'hma', 'Hma1.2p1_0592F.1_g185490' => 'hma', 'Hma1.2p1_0592F.1_g185500' => 'hma', 'Hma1.2p1_0592F.1_g185510' => 'hma', 'Hma1.2p1_0592F.1_g185520' => 'hma', 'Hma1.2p1_0592F.1_g185530' => 'hma', 'Hma1.2p1_0818F.1_g223450' => 'hma', 'HPP92_009708' => 'vpl', 'HPP92_009793' => 'vpl', 'HPP92_009796' => 'vpl', 'HPP92_009797' => 'vpl', 'HPP92_014940' => 'vpl', 'HPP92_014988' => 'vpl', 'Hund02463' => 'sun', 'Hund02760' => 'sun', 'Hund05071' => 'sun', 'Hund10108' => 'sun', 'Hund11204' => 'sun', 'Hund14016' => 'sun', 'Hund16464' => 'sun', 'Lalb_Chr09g0333391' => 'lal', 'Lalb_Chr11g0070461' => 'lal', 'Lalb_Chr12g0201671' => 'lal', 'Lalb_Chr13g0297161' => 'lal', 'Lj1g0002823' => 'lja', 'Lj3C1074T6' => 'lonja', 'Lj4A212T28' => 'lonja', 'Lj4g0005516' => 'lja', 'Lj4g0013705' => 'lja', 'Lj4g0027865' => 'lja', 'Lj5C92G16' => 'lonja', 'Lj5C92T12' => 'lonja', 'Lj7C596T3' => 'lonja', 'Lj9A446G59' => 'lonja', 'Lj9A482G21' => 'lonja', 'Lsat_1_v5_gn_1_28261' => 'lsa', 'Lsat_1_v5_gn_1_28281' => 'lsa', 'Lsat_1_v5_gn_1_32721' => 'lsa', 'Lsat_1_v5_gn_4_151760' => 'lsa', 'Lsat_1_v5_gn_4_2120' => 'lsa', 'Lsat_1_v5_gn_4_75761' => 'lsa', 'Lsat_1_v5_gn_5_10920' => 'lsa', 'Manes.02G099900' => 'mes', 'Manes.11G096200' => 'mes', 'Manes.12G007200' => 'mes', 'Manes.14G048300' => 'mes', 'Manes.17G114700' => 'mes', 'Mapoly0002s0070' => 'mpo', 'Mapoly0029s0099' => 'mpo', 'MBI07_g24742_MAGBIO' => 'mbi', 'MBI10_g27988_MAGBIO' => 'mbi', 'MBI11_g13057_MAGBIO' => 'mbi', 'MD02G1137200' => 'mdo', 'MD06G1137200' => 'mdo', 'MD07G1122300' => 'mdo', 'MD09G1078200' => 'mdo', 'MD13G1123700' => 'mdo', 'MD14G1151900' => 'mdo', 'MD17G1030900' => 'mdo', 'MD17G1068200' => 'mdo', 'MD17G1068600' => 'mdo', 'Medtr3g077540' => 'mtr', 'Medtr4g105530' => 'mtr', 'Medtr8g076580' => 'mtr', 'Medtr8g076590' => 'mtr', 'Medtr8g096410' => 'mtr', 'MELO3C016411.2' => 'cme', 'MELO3C017780.2' => 'cme', 'MELO3C022560.2' => 'cme', 'MELO3C026187.2' => 'cme', 'MELO3C026286.2' => 'cme', 'MELO3C032854.2' => 'cme', 'Migut.H02495' => 'egut', 'Migut.I00561' => 'egut', 'Migut.K01015' => 'egut', 'Migut.K01016' => 'egut', 'Migut.L00743' => 'egut', 'Migut.L00744' => 'egut', 'Migut.L00746' => 'egut', 'Migut.L00798' => 'egut', 'Migut.L00799' => 'egut', 'Migut.N02096' => 'egut', 'MSTRG.11259' => 'ama', 'MSTRG.23142' => 'ama', 'MSTRG.2499' => 'ama', 'Nitab4.5_0000003g0730' => 'nta', 'Nitab4.5_0000137g0020' => 'nta', 'Nitab4.5_0000721g0210' => 'nta', 'Nitab4.5_0000723g0050' => 'nta', 'Nitab4.5_0000913g0070' => 'nta', 'Nitab4.5_0001332g0040' => 'nta', 'Nitab4.5_0001771g0050' => 'nta', 'Nitab4.5_0001918g0050' => 'nta', 'Nitab4.5_0002686g0030' => 'nta', 'Nitab4.5_0003156g0020' => 'nta', 'Nitab4.5_0003383g0040' => 'nta', 'Nitab4.5_0003918g0010' => 'nta', 'Nitab4.5_0006760g0010' => 'nta', 'Nn1g05981' => 'nnu', 'Nn1g06288' => 'nnu', 'Nn3g16371' => 'nnu', 'Nn3g16786' => 'nnu', 'Nn4g22232' => 'nnu', 'Oeu005144.1' => 'oeu', 'Oeu005145.1' => 'oeu', 'Oeu011348.1' => 'oeu', 'Oeu016415.1' => 'oeu', 'Oeu023501.1' => 'oeu', 'Oeu044473.1' => 'oeu', 'Oeu048892.2' => 'oeu', 'Os01g0549200' => 'osa', 'Os02g0469300' => 'osa', 'Os04g0311100' => 'osa', 'Os06g0474900' => 'osa', 'Os10g0181700' => 'osa', 'Os11g0454800' => 'osa', 'Peaxi162Scf00037g00714' => 'pax', 'Peaxi162Scf00084g01217' => 'pax', 'Peaxi162Scf00257g00217' => 'pax', 'Peaxi162Scf00516g00215' => 'pax', 'Peaxi162Scf00689g00123' => 'pax', 'PGR044G2719' => 'pgr', 'PGR083G1360' => 'pgr', 'PGR102G2849' => 'pgr', 'PGR119G2534' => 'pgr', 'PGSC0003DMG400003538' => 'stu', 'PGSC0003DMG400028138' => 'stu', 'PGSC0003DMG400031732' => 'stu', 'PGSC0003DMG400038165' => 'stu', 'Phvul.002G284600' => 'pvu', 'Phvul.003G258200' => 'pvu', 'Phvul.009G176500' => 'pvu', 'Potri.003G167201' => 'ptr', 'Potri.005G118400' => 'ptr', 'Potri.012G089000' => 'ptr', 'Potri.012G102800' => 'ptr', 'Potri.015G079400' => 'ptr', 'Potri.015G100900' => 'ptr', 'Pp3c14_9810' => 'ppa', 'Pp3c15_10450' => 'ppa', 'Pp3c20_19150' => 'ppa', 'Pp3c23_12740' => 'ppa', 'Pp3c23_6310' => 'ppa', 'Pp3c24_3720' => 'ppa', 'Pp3c27_2580' => 'ppa', 'Pp3c9_8990' => 'ppa', 'PRCOL_00002854' => 'pco', 'Prupe.1G221200' => 'ppe', 'Prupe.3G289000' => 'ppe', 'Prupe.5G147000' => 'ppe', 'Prupe.6G157300' => 'ppe', 'Prupe.7G163400' => 'ppe', 'Psat0s2177g0040' => 'psa', 'Psat3g174760' => 'psa', 'Psat3g192160' => 'psa', 'Psat4g058520' => 'psa', 'Psat4g096840' => 'psa', 'Psat7g037320' => 'psa', 'PSO017G1274' => 'pso', 'PSO017G5166' => 'pso', 'PSO063G4558' => 'pso', 'PSO170G4458' => 'pso', 'PSO170G5005' => 'pso', 'PSO210G6156' => 'pso', 'PSO210G6635' => 'pso', 'PSO210G7397' => 'pso', 'PSO210G7700' => 'pso', 'PSO455G0035' => 'pso', 'PSO455G0180' => 'pso', 'PSO478G4515' => 'pso', 'PSO832G1305' => 'pso', 'PSO832G3489' => 'pso', 'QL02p075247' => 'qlo', 'QL03p051148' => 'qlo', 'QL05p010313' => 'qlo', 'QL06p034627' => 'qlo', 'QL10p001889' => 'qlo', 'QL10p010846' => 'qlo', 'RcHm_v2.0_Chr1g0350621' => 'rch', 'RcHm_v2.0_Chr1g0350641' => 'rch', 'RcHm_v2.0_Chr2g0092891' => 'rch', 'RcHm_v2.0_Chr2g0100251' => 'rch', 'RcHm_v2.0_Chr2g0158661' => 'rch', 'RcHm_v2.0_Chr2g0172741' => 'rch', 'RcHm_v2.0_Chr4g0429571' => 'rch', 'RcHm_v2.0_Chr5g0042471' => 'rch', 'RcHm_v2.0_Chr7g0189451' => 'rch', 'Rhsim08G0052000' => 'rsi', 'Rhsim08G0174400' => 'rsi', 'Rhsim08G0193200' => 'rsi', 'Rhsim10G0214800' => 'rsi', 'Rhsim10G0214900' => 'rsi', 'Rhsim10G0215000' => 'rsi', 'Rhsim12G0022900' => 'rsi', 'Rhsim12G0177500' => 'rsi', 'Rhsim12G0177700' => 'rsi', 'Sabra03G0122600' => 'sbr', 'Sabra05G0097400' => 'sbr', 'Sabra12G0064100' => 'sbr', 'Sabra15G0121300' => 'sbr', 'SalBow2G0642' => 'sbo', 'SalBow5G2667' => 'sbo', 'SalBow5G4873' => 'sbo', 'SalBow8G2395' => 'sbo', 'Sc03g0003290' => 'sci', 'Sc10g0010130' => 'sci', 'Sc22g0003650' => 'sci', 'Sed0001603' => 'sed', 'Sed0004259' => 'sed', 'Sed0006789' => 'sed', 'Sed0011838' => 'sed', 'Sed0012964' => 'sed', 'Sed0016383' => 'sed', 'Sed0019010' => 'sed', 'Sed0020188' => 'sed', 'SEGI_04702' => 'sgi', 'SEGI_17231' => 'sgi', 'SEGI_18877' => 'sgi', 'SEGI_25196' => 'sgi', 'SEGI_25515' => 'sgi', 'SEGI_28445' => 'sgi', 'SEGI_37452' => 'sgi', 'SGA_v2.0_scaffold188G40336' => 'sas', 'SGA_v2.0_scaffold228G43247' => 'sas', 'SGA_v2.0_scaffold280G46853' => 'sas', 'SGA_v2.0_scaffold34G13808' => 'sas', 'SGA_v2.0_scaffold40G15576' => 'sas', 'SGA_v2.0_scaffold611G53188' => 'sas', 'SGA_v2.0_scaffold78G25461' => 'sas', 'SGA_v2.0_scaffold90G27888' => 'sas', 'SHI08601' => 'shi', 'SHI08606' => 'shi', 'SHI17117' => 'shi', 'SHI17119' => 'shi', 'SMO118G0201' => 'smo', 'SMO169G0247' => 'smo', 'SMO176G0006' => 'smo', 'SMO176G0015' => 'smo', 'SMO202G0006' => 'smo', 'SMO240G0050' => 'smo', 'SMO286G0009' => 'smo', 'SMO338G0033' => 'smo', 'SMO356G0533' => 'smo', 'SMO364G0382' => 'smo', 'SMO367G0166' => 'smo', 'SMO367G1098' => 'smo', 'Solyc01g009920.3' => 'sly', 'Solyc01g099300.3' => 'sly', 'Solyc02g084700.3' => 'sly', 'Solyc03g097520.3' => 'sly', 'Solyc06g071580.3' => 'sly', 'Solyc10g081760.3' => 'sly', 'Sopen01g005480' => 'spe', 'Sopen01g042850' => 'spe', 'Sopen02g029370' => 'spe', 'Sopen03g028280' => 'spe', 'Sopen06g027870' => 'spe', 'Sopen10g032270' => 'spe', 'Sp5g18180' => 'spa', 'Sp6g12880' => 'spa', 'Sp6g30850' => 'spa', 'Sp7g22960' => 'spa', 'Sp7g34010' => 'spa', 'SpUn1326_0010' => 'spa', 'TAR371G0242' => 'tar', 'TAR622G0638' => 'tar', 'TAR628G1548' => 'tar', 'TAR629G1079' => 'tar', 'TAR629G3413' => 'tar', 'THA.LOC104804249' => 'tha', 'THA.LOC104808315' => 'tha', 'THA.LOC104809238' => 'tha', 'THA.LOC104825484' => 'tha', 'Thecc.01G025500' => 'tca', 'Thecc.03G015800' => 'tca', 'Thecc.03G018000' => 'tca', 'Thecc.03G134800' => 'tca', 'Thecc.04G014700' => 'tca', 'Thhalv10006991m.g' => 'esa', 'Thhalv10012707m.g' => 'esa', 'Thhalv10015739m.g' => 'esa', 'Thhalv10024553m.g' => 'esa', 'Thhalv10024673m.g' => 'esa', 'Thhalv10029187m.g' => 'esa', 'TPR.G12971' => 'tpr', 'TPR.G29396' => 'tpr', 'TPR.G33376' => 'tpr', 'TPR.G35508' => 'tpr', 'TPR.G35516' => 'tpr', 'TPR.G37317' => 'tpr', 'TPR.G37389' => 'tpr', 'TPR.G37523' => 'tpr', 'TPR.G559' => 'tpr', 'TWI14G0070' => 'twi', 'TWI14G0729' => 'twi', 'TWI18G0596' => 'twi', 'TWI39G0780' => 'twi', 'TWI39G0850' => 'twi', 'TWI73G1052' => 'twi', 'unitig_52.g17485' => 'ugi', 'unitig_61.g26355' => 'ugi', 'vmacro01040' => 'vma', 'vmacro16731' => 'vma', 'vmacro18270' => 'vma', 'vmacro19142' => 'vma', 'vmacro19407' => 'vma', 'vmacro19408' => 'vma', 'vmacro21899' => 'vma', 'vmacro21900' => 'vma', 'vmacro21901' => 'vma', 'VMungo0251G0490' => 'vmu', 'VMungo0251G1748' => 'vmu', 'VMungo1309G0421' => 'vmu', 'Zm00001eb086500' => 'zma', 'Zm00001eb150680' => 'zma', 'Zm00001eb162330' => 'zma', 'Zm00001eb203130' => 'zma', 'Zm00001eb369480' => 'zma', 'Zm00001eb382340' => 'zma', 'Zm00001eb416360' => 'zma' ) $gf_id = 'HOM05D000902' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000902' ) $data_identifier = 'HOM05D000902' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 13, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 10, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 6, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 9, 'hma' => (int) 12, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 4, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 6, 'ppa' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 6, 'rch' => (int) 9, 'rsi' => (int) 9, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 12, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 3, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416360' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000902', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '663', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02470' => 'bna', 'A01p16260' => 'bna', 'A02p01680' => 'bna', 'A03p16600' => 'bna', 'A03p55660' => 'bna', 'A03p64160' => 'bna', 'A03p64170' => 'bna', 'A08p31900' => 'bna', 'A09p59530' => 'bna', 'A10p08230' => 'bna', 'A10p25090' => 'bna', 'Aa31LG3G7100' => 'aar', 'Aa31LG3G7110' => 'aar', 'Aa31LG6G13160' => 'aar', 'Aa31LG7G10770' => 'aar', 'Aa31LG7G3830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2723' => 'aag', 'Actinidia08045' => 'ach', 'Actinidia08888' => 'ach', 'Actinidia18333' => 'ach', 'Actinidia19334' => 'ach', 'Actinidia25552' => 'ach', 'Actinidia26089' => 'ach', 'Actinidia30615' => 'ach', 'Actinidia30616' => 'ach', 'Actinidia33083' => 'ach', 'Actinidia35762' => 'ach', 'Ah.02g110620' => 'amhyb', 'Ah.11g046390' => 'amhyb', 'AL1G31670' => 'aly', 'AL6G23730' => 'aly', 'AL7G14740' => 'aly', 'AL7G14750' => 'aly', 'AL7G14760' => 'aly', 'AL7G28220' => 'aly', 'AL8G24940' => 'aly', 'Aqoxy3G01665' => 'aox', 'Aqoxy3G02853' => 'aox', 'Aqoxy5G01513' => 'aox', 'Aqoxy5G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8SKA4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ75LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKDA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0LJZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7REX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZP4YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWX7I5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2QKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS0L9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPCD8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q161UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC7XCF' => 'arhy', 'AT1G19100' => 'ath', 'AT4G24970' => 'ath', 'AT4G36270' => 'ath', 'AT4G36280' => 'ath', 'AT4G36290' => 'ath', 'AT5G13130' => 'ath', 'AT5G50780' => 'ath', 'ATR0582G266' => 'atr', 'ATR0661G195' => 'atr', 'ATR1152G031' => 'atr', 'Atru.chr11.2382' => 'acertr', 'Atru.chr12.2337' => 'acertr', 'Atru.chr3.744' => 'acertr', 'Atru.chr6.1870' => 'acertr', 'Atru.chr9.2515' => 'acertr', 'AUR62004120' => 'cqu', 'AUR62005667' => 'cqu', 'AUR62007634' => 'cqu', 'AUR62008186' => 'cqu', 'AUR62008187' => 'cqu', 'AUR62008188' => 'cqu', 'AUR62027954' => 'cqu', 'AUR62028766' => 'cqu', 'AUR62028767' => 'cqu', 'AUR62028768' => 'cqu', 'AUR62028886' => 'cqu', 'AUR62029563' => 'cqu', 'AUR62038832' => 'cqu', 'BcaB01g04149' => 'bca', 'BcaB03g12940' => 'bca', 'BcaB03g13090' => 'bca', 'BcaB03g14466' => 'bca', 'BcaB05g24035' => 'bca', 'BcaC01g06050' => 'bca', 'BcaC04g19148' => 'bca', 'BcaC04g20761' => 'bca', 'BcaC06g32845' => 'bca', 'BcaC07g41274' => 'bca', 'BcaC09g50827' => 'bca', 'BcaNung00741' => 'bca', 'BcaNung00742' => 'bca', 'BcaNung01859' => 'bca', 'BcaNung03985' => 'bca', 'BcaNung03989' => 'bca', 'BcaNung05661' => 'bca', 'BolC1t00257H' => 'bol', 'BolC1t01956H' => 'bol', 'BolC2t06534H' => 'bol', 'BolC3t14334H' => 'bol', 'BolC5t30451H' => 'bol', 'BolC7t45880H' => 'bol', 'BolC7t46586H' => 'bol', 'BolC8t49301H' => 'bol', 'BolC8t51837H' => 'bol', 'BolC9t56822H' => 'bol', 'BolC9t59235H' => 'bol', 'BraA01t00234Z' => 'bra', 'BraA01t01563Z' => 'bra', 'BraA02t05147Z' => 'bra', 'BraA03t10947Z' => 'bra', 'BraA03t14633Z' => 'bra', 'BraA08t35112Z' => 'bra', 'BraA09t41330Z' => 'bra', 'BraA10t44570Z' => 'bra', 'C01p02670' => 'bna', 'C01p20260' => 'bna', 'C02p05890' => 'bna', 'C03p19530' => 'bna', 'C05p17470' => 'bna', 'C07p53900' => 'bna', 'C07p61630' => 'bna', 'C08p16800' => 'bna', 'C08p42810' => 'bna', 'C09p39480' => 'bna', 'C09p63980' => 'bna', 'CAN.G1001.7' => 'can', 'CAN.G1034.55' => 'can', 'CAN.G143.7' => 'can', 'CAN.G3340.1' => 'can', 'CAN.G358.19' => 'can', 'CAN.G373.2' => 'can', 'CAN.G674.16' => 'can', 'CAN.G674.17' => 'can', 'CAN.G674.18' => 'can', 'CAN.G732.2' => 'can', 'CAN.G732.3' => 'can', 'CAN.G993.39' => 'can', 'CANSAT01G2052' => 'cansat', 'CANSAT80G0070' => 'cansat', 'CANSAT80G0483' => 'cansat', 'CANSAT80G0625' => 'cansat', 'CARHR019690' => 'chi', 'CARHR080280' => 'chi', 'CARHR152750' => 'chi', 'CARHR152760' => 'chi', 'CARHR152770' => 'chi', 'CARHR200340' => 'chi', 'CARHR232370' => 'chi', 'CARHR244670' => 'chi', 'CARHR244680' => 'chi', 'CARHR257520' => 'chi', 'Carub.0001s1872' => 'cru', 'Carub.0006s1130' => 'cru', 'Carub.0007s0396' => 'cru', 'Carub.0007s0397' => 'cru', 'Carub.0007s1608' => 'cru', 'Carub.0008s1068' => 'cru', 'Carub.0008s1077' => 'cru', 'Ca_16158_v3' => 'car', 'Ca_17571_v3' => 'car', 'Ca_21936_v3' => 'car', 'Ca_22350_v3' => 'car', 'CBR_g22445' => 'cbr', 'CBR_g26290' => 'cbr', 'Cc04_g09610' => 'ccan', 'Cc04_g12280' => 'ccan', 'Cc07_g10230' => 'ccan', 'CDE02G0093' => 'cde', 'CDE02G0701' => 'cde', 'CDE04G1050' => 'cde', 'CDE05G1833' => 'cde', 'CDE05G3058' => 'cde', 'CDE05G3380' => 'cde', 'CDE06G0536' => 'cde', 'Cfa006923' => 'cfa', 'Cfa009402' => 'cfa', 'Cfa018751' => 'cfa', 'Cfa019164' => 'cfa', 'Cfa022935' => 'cfa', 'Ciclev10019081m.g' => 'ccl', 'Ciclev10025076m.g' => 'ccl', 'Ciclev10030712m.g' => 'ccl', 'Ciclev10033760m.g' => 'ccl', 'CiPaw.05G105600' => 'cil', 'CiPaw.08G136700' => 'cil', 'CiPaw.11G003900' => 'cil', 'CiPaw.11G023700' => 'cil', 'CiPaw.12G003700' => 'cil', 'ClCG06G017100' => 'cla', 'ClCG06G018110' => 'cla', 'ClCG07G008800' => 'cla', 'ClCG07G015330' => 'cla', 'COL.COLO4_13698' => 'col', 'COL.COLO4_16659' => 'col', 'COL.COLO4_21986' => 'col', 'COL.COLO4_24049' => 'col', 'COL.COLO4_29061' => 'col', 'COL.COLO4_29075' => 'col', 'COL.COLO4_30094' => 'col', 'Cpa.g.c33689' => 'cpa', 'Cpa.g.sc108.39' => 'cpa', 'Cpa.g.sc108.41' => 'cpa', 'Cpa.g.sc1163.1' => 'cpa', 'Cpa.g.sc4.155' => 'cpa', 'Cpa.g.sc6.194' => 'cpa', 'CsaV3_1G000340' => 'csa', 'CsaV3_1G001400' => 'csa', 'CsaV3_4G002220' => 'csa', 'CsaV3_4G005370' => 'csa', 'CSS0007487' => 'camsi', 'CSS0008066' => 'camsi', 'CSS0009120' => 'camsi', 'CSS0015512' => 'camsi', 'CSS0022409' => 'camsi', 'CSS0025358' => 'camsi', 'CSS0044547' => 'camsi', 'DCAR_013057' => 'dca', 'DCAR_015058' => 'dca', 'DCAR_016027' => 'dca', 'DCAR_017327' => 'dca', 'DCAR_020743' => 'dca', 'DCAR_026157' => 'dca', 'DCAR_032339' => 'dca', 'DCAR_032340' => 'dca', 'Dinv11200' => 'din', 'Dinv11201' => 'din', 'Dinv20631' => 'din', 'Dinv23182' => 'din', 'Dinv33466' => 'din', 'Dinv33583' => 'din', 'Dinv38565' => 'din', 'Duzib068G0200' => 'dzi', 'Duzib147G0132' => 'dzi', 'Duzib147G0635' => 'dzi', 'Duzib205G1670' => 'dzi', 'Duzib251G0606' => 'dzi', 'ECA232G3336' => 'eca', 'ECA232G3763' => 'eca', 'ECA232G4845' => 'eca', 'ECA234G1607' => 'eca', 'ECA246G0932' => 'eca', 'ECA247G0781' => 'eca', 'ECA247G1932' => 'eca', 'ECA247G2079' => 'eca', 'ECA247G3338' => 'eca', 'ECA247G4115' => 'eca', 'EL10Ac3g06552' => 'bvu', 'EL10Ac5g10721' => 'bvu', 'EL10Ac5g10722' => 'bvu', 'EL10Ac5g10723' => 'bvu', 'EL10Ac5g11361' => 'bvu', 'EL10Ac6g13553' => 'bvu', 'EL10As8g23872' => 'bvu', 'Eucgr.B00250' => 'egr', 'Eucgr.B00251' => 'egr', 'Eucgr.B03533' => 'egr', 'Eucgr.I02381' => 'egr', 'Eucgr.K02700' => 'egr', 'FAN02G0174' => 'fan', 'FAN02G3146' => 'fan', 'FAN04G1672' => 'fan', 'FAN04G2273' => 'fan', 'FAN05G2791' => 'fan', 'FAN05G4035' => 'fan', 'FAN07G0834' => 'fan', 'FAN08G1198' => 'fan', 'FAN09G4182' => 'fan', 'FAN12G0496' => 'fan', 'FAN13G1027' => 'fan', 'FAN13G2951' => 'fan', 'FAN14G0705' => 'fan', 'FAN14G0720' => 'fan', 'FAN17G0201' => 'fan', 'FAN17G2665' => 'fan', 'FAN18G1456' => 'fan', 'FAN18G1525' => 'fan', 'FAN18G3500' => 'fan', 'FAN28G2670' => 'fan', 'FvH4_1g12391' => 'fve', 'FvH4_4g23220' => 'fve', 'FvH4_5g08810' => 'fve', 'FvH4_5g28960' => 'fve', 'FvH4_6g42820' => 'fve', 'FvH4_6g51110' => 'fve', 'Glyma.02G051802' => 'gma', 'Glyma.04G185300' => 'gma', 'Glyma.05G202900' => 'gma', 'Glyma.08G010300' => 'gma', 'Glyma.16G131900' => 'gma', 'Glyma.17G087900' => 'gma', 'Gohir.A07G048600' => 'ghi', 'Gohir.A11G179000' => 'ghi', 'Gohir.A12G140900' => 'ghi', 'Gohir.A12G140950' => 'ghi', 'Gohir.A12G191700' => 'ghi', 'Gohir.A13G086300' => 'ghi', 'Gohir.D07G052900' => 'ghi', 'Gohir.D11G186600' => 'ghi', 'Gohir.D12G145575' => 'ghi', 'Gohir.D12G145650' => 'ghi', 'Gohir.D12G145725' => 'ghi', 'Gohir.D12G194050' => 'ghi', 'Gohir.D13G091800' => 'ghi', 'Gorai.001G055900' => 'gra', 'Gorai.007G198400' => 'gra', 'Gorai.008G157000' => 'gra', 'Gorai.008G157100' => 'gra', 'Gorai.008G208700' => 'gra', 'Gorai.010G138700' => 'gra', 'GSVIVG01000977001' => 'vvi', 'GSVIVG01007708001' => 'vvi', 'GSVIVG01008587001' => 'vvi', 'GSVIVG01018849001' => 'vvi', 'GSVIVG01032432001' => 'vvi', 'HanXRQChr02g0034131' => 'han', 'HanXRQChr02g0035981' => 'han', 'HanXRQChr02g0035991' => 'han', 'HanXRQChr05g0155611' => 'han', 'HanXRQChr05g0155621' => 'han', 'HanXRQChr08g0236501' => 'han', 'HanXRQChr09g0261321' => 'han', 'HanXRQChr09g0272081' => 'han', 'HanXRQChr10g0310741' => 'han', 'HanXRQChr11g0325591' => 'han', 'HanXRQChr12g0385691' => 'han', 'HanXRQChr13g0387801' => 'han', 'HanXRQChr15g0463011' => 'han', 'Haze_03826' => 'cav', 'Haze_03827' => 'cav', 'Haze_07183' => 'cav', 'Haze_07537' => 'cav', 'Haze_07539' => 'cav', 'Haze_12461' => 'cav', 'Haze_16115' => 'cav', 'Haze_16808' => 'cav', 'Haze_18531' => 'cav', 'Hma1.2p1_0046F.1_g026700' => 'hma', 'Hma1.2p1_0046F.1_g026710' => 'hma', 'Hma1.2p1_0168F.1_g074340' => 'hma', 'Hma1.2p1_0266F.1_g107030' => 'hma', 'Hma1.2p1_0266F.1_g107060' => 'hma', 'Hma1.2p1_0275F.1_g110510' => 'hma', 'Hma1.2p1_0592F.1_g185490' => 'hma', 'Hma1.2p1_0592F.1_g185500' => 'hma', 'Hma1.2p1_0592F.1_g185510' => 'hma', 'Hma1.2p1_0592F.1_g185520' => 'hma', 'Hma1.2p1_0592F.1_g185530' => 'hma', 'Hma1.2p1_0818F.1_g223450' => 'hma', 'HPP92_009708' => 'vpl', 'HPP92_009793' => 'vpl', 'HPP92_009796' => 'vpl', 'HPP92_009797' => 'vpl', 'HPP92_014940' => 'vpl', 'HPP92_014988' => 'vpl', 'Hund02463' => 'sun', 'Hund02760' => 'sun', 'Hund05071' => 'sun', 'Hund10108' => 'sun', 'Hund11204' => 'sun', 'Hund14016' => 'sun', 'Hund16464' => 'sun', 'Lalb_Chr09g0333391' => 'lal', 'Lalb_Chr11g0070461' => 'lal', 'Lalb_Chr12g0201671' => 'lal', 'Lalb_Chr13g0297161' => 'lal', 'Lj1g0002823' => 'lja', 'Lj3C1074T6' => 'lonja', 'Lj4A212T28' => 'lonja', 'Lj4g0005516' => 'lja', 'Lj4g0013705' => 'lja', 'Lj4g0027865' => 'lja', 'Lj5C92G16' => 'lonja', 'Lj5C92T12' => 'lonja', 'Lj7C596T3' => 'lonja', 'Lj9A446G59' => 'lonja', 'Lj9A482G21' => 'lonja', 'Lsat_1_v5_gn_1_28261' => 'lsa', 'Lsat_1_v5_gn_1_28281' => 'lsa', 'Lsat_1_v5_gn_1_32721' => 'lsa', 'Lsat_1_v5_gn_4_151760' => 'lsa', 'Lsat_1_v5_gn_4_2120' => 'lsa', 'Lsat_1_v5_gn_4_75761' => 'lsa', 'Lsat_1_v5_gn_5_10920' => 'lsa', 'Manes.02G099900' => 'mes', 'Manes.11G096200' => 'mes', 'Manes.12G007200' => 'mes', 'Manes.14G048300' => 'mes', 'Manes.17G114700' => 'mes', 'Mapoly0002s0070' => 'mpo', 'Mapoly0029s0099' => 'mpo', 'MBI07_g24742_MAGBIO' => 'mbi', 'MBI10_g27988_MAGBIO' => 'mbi', 'MBI11_g13057_MAGBIO' => 'mbi', 'MD02G1137200' => 'mdo', 'MD06G1137200' => 'mdo', 'MD07G1122300' => 'mdo', 'MD09G1078200' => 'mdo', 'MD13G1123700' => 'mdo', 'MD14G1151900' => 'mdo', 'MD17G1030900' => 'mdo', 'MD17G1068200' => 'mdo', 'MD17G1068600' => 'mdo', 'Medtr3g077540' => 'mtr', 'Medtr4g105530' => 'mtr', 'Medtr8g076580' => 'mtr', 'Medtr8g076590' => 'mtr', 'Medtr8g096410' => 'mtr', 'MELO3C016411.2' => 'cme', 'MELO3C017780.2' => 'cme', 'MELO3C022560.2' => 'cme', 'MELO3C026187.2' => 'cme', 'MELO3C026286.2' => 'cme', 'MELO3C032854.2' => 'cme', 'Migut.H02495' => 'egut', 'Migut.I00561' => 'egut', 'Migut.K01015' => 'egut', 'Migut.K01016' => 'egut', 'Migut.L00743' => 'egut', 'Migut.L00744' => 'egut', 'Migut.L00746' => 'egut', 'Migut.L00798' => 'egut', 'Migut.L00799' => 'egut', 'Migut.N02096' => 'egut', 'MSTRG.11259' => 'ama', 'MSTRG.23142' => 'ama', 'MSTRG.2499' => 'ama', 'Nitab4.5_0000003g0730' => 'nta', 'Nitab4.5_0000137g0020' => 'nta', 'Nitab4.5_0000721g0210' => 'nta', 'Nitab4.5_0000723g0050' => 'nta', 'Nitab4.5_0000913g0070' => 'nta', 'Nitab4.5_0001332g0040' => 'nta', 'Nitab4.5_0001771g0050' => 'nta', 'Nitab4.5_0001918g0050' => 'nta', 'Nitab4.5_0002686g0030' => 'nta', 'Nitab4.5_0003156g0020' => 'nta', 'Nitab4.5_0003383g0040' => 'nta', 'Nitab4.5_0003918g0010' => 'nta', 'Nitab4.5_0006760g0010' => 'nta', 'Nn1g05981' => 'nnu', 'Nn1g06288' => 'nnu', 'Nn3g16371' => 'nnu', 'Nn3g16786' => 'nnu', 'Nn4g22232' => 'nnu', 'Oeu005144.1' => 'oeu', 'Oeu005145.1' => 'oeu', 'Oeu011348.1' => 'oeu', 'Oeu016415.1' => 'oeu', 'Oeu023501.1' => 'oeu', 'Oeu044473.1' => 'oeu', 'Oeu048892.2' => 'oeu', 'Os01g0549200' => 'osa', 'Os02g0469300' => 'osa', 'Os04g0311100' => 'osa', 'Os06g0474900' => 'osa', 'Os10g0181700' => 'osa', 'Os11g0454800' => 'osa', 'Peaxi162Scf00037g00714' => 'pax', 'Peaxi162Scf00084g01217' => 'pax', 'Peaxi162Scf00257g00217' => 'pax', 'Peaxi162Scf00516g00215' => 'pax', 'Peaxi162Scf00689g00123' => 'pax', 'PGR044G2719' => 'pgr', 'PGR083G1360' => 'pgr', 'PGR102G2849' => 'pgr', 'PGR119G2534' => 'pgr', 'PGSC0003DMG400003538' => 'stu', 'PGSC0003DMG400028138' => 'stu', 'PGSC0003DMG400031732' => 'stu', 'PGSC0003DMG400038165' => 'stu', 'Phvul.002G284600' => 'pvu', 'Phvul.003G258200' => 'pvu', 'Phvul.009G176500' => 'pvu', 'Potri.003G167201' => 'ptr', 'Potri.005G118400' => 'ptr', 'Potri.012G089000' => 'ptr', 'Potri.012G102800' => 'ptr', 'Potri.015G079400' => 'ptr', 'Potri.015G100900' => 'ptr', 'Pp3c14_9810' => 'ppa', 'Pp3c15_10450' => 'ppa', 'Pp3c20_19150' => 'ppa', 'Pp3c23_12740' => 'ppa', 'Pp3c23_6310' => 'ppa', 'Pp3c24_3720' => 'ppa', 'Pp3c27_2580' => 'ppa', 'Pp3c9_8990' => 'ppa', 'PRCOL_00002854' => 'pco', 'Prupe.1G221200' => 'ppe', 'Prupe.3G289000' => 'ppe', 'Prupe.5G147000' => 'ppe', 'Prupe.6G157300' => 'ppe', 'Prupe.7G163400' => 'ppe', 'Psat0s2177g0040' => 'psa', 'Psat3g174760' => 'psa', 'Psat3g192160' => 'psa', 'Psat4g058520' => 'psa', 'Psat4g096840' => 'psa', 'Psat7g037320' => 'psa', 'PSO017G1274' => 'pso', 'PSO017G5166' => 'pso', 'PSO063G4558' => 'pso', 'PSO170G4458' => 'pso', 'PSO170G5005' => 'pso', 'PSO210G6156' => 'pso', 'PSO210G6635' => 'pso', 'PSO210G7397' => 'pso', 'PSO210G7700' => 'pso', 'PSO455G0035' => 'pso', 'PSO455G0180' => 'pso', 'PSO478G4515' => 'pso', 'PSO832G1305' => 'pso', 'PSO832G3489' => 'pso', 'QL02p075247' => 'qlo', 'QL03p051148' => 'qlo', 'QL05p010313' => 'qlo', 'QL06p034627' => 'qlo', 'QL10p001889' => 'qlo', 'QL10p010846' => 'qlo', 'RcHm_v2.0_Chr1g0350621' => 'rch', 'RcHm_v2.0_Chr1g0350641' => 'rch', 'RcHm_v2.0_Chr2g0092891' => 'rch', 'RcHm_v2.0_Chr2g0100251' => 'rch', 'RcHm_v2.0_Chr2g0158661' => 'rch', 'RcHm_v2.0_Chr2g0172741' => 'rch', 'RcHm_v2.0_Chr4g0429571' => 'rch', 'RcHm_v2.0_Chr5g0042471' => 'rch', 'RcHm_v2.0_Chr7g0189451' => 'rch', 'Rhsim08G0052000' => 'rsi', 'Rhsim08G0174400' => 'rsi', 'Rhsim08G0193200' => 'rsi', 'Rhsim10G0214800' => 'rsi', 'Rhsim10G0214900' => 'rsi', 'Rhsim10G0215000' => 'rsi', 'Rhsim12G0022900' => 'rsi', 'Rhsim12G0177500' => 'rsi', 'Rhsim12G0177700' => 'rsi', 'Sabra03G0122600' => 'sbr', 'Sabra05G0097400' => 'sbr', 'Sabra12G0064100' => 'sbr', 'Sabra15G0121300' => 'sbr', 'SalBow2G0642' => 'sbo', 'SalBow5G2667' => 'sbo', 'SalBow5G4873' => 'sbo', 'SalBow8G2395' => 'sbo', 'Sc03g0003290' => 'sci', 'Sc10g0010130' => 'sci', 'Sc22g0003650' => 'sci', 'Sed0001603' => 'sed', 'Sed0004259' => 'sed', 'Sed0006789' => 'sed', 'Sed0011838' => 'sed', 'Sed0012964' => 'sed', 'Sed0016383' => 'sed', 'Sed0019010' => 'sed', 'Sed0020188' => 'sed', 'SEGI_04702' => 'sgi', 'SEGI_17231' => 'sgi', 'SEGI_18877' => 'sgi', 'SEGI_25196' => 'sgi', 'SEGI_25515' => 'sgi', 'SEGI_28445' => 'sgi', 'SEGI_37452' => 'sgi', 'SGA_v2.0_scaffold188G40336' => 'sas', 'SGA_v2.0_scaffold228G43247' => 'sas', 'SGA_v2.0_scaffold280G46853' => 'sas', 'SGA_v2.0_scaffold34G13808' => 'sas', 'SGA_v2.0_scaffold40G15576' => 'sas', 'SGA_v2.0_scaffold611G53188' => 'sas', 'SGA_v2.0_scaffold78G25461' => 'sas', 'SGA_v2.0_scaffold90G27888' => 'sas', 'SHI08601' => 'shi', 'SHI08606' => 'shi', 'SHI17117' => 'shi', 'SHI17119' => 'shi', 'SMO118G0201' => 'smo', 'SMO169G0247' => 'smo', 'SMO176G0006' => 'smo', 'SMO176G0015' => 'smo', 'SMO202G0006' => 'smo', 'SMO240G0050' => 'smo', 'SMO286G0009' => 'smo', 'SMO338G0033' => 'smo', 'SMO356G0533' => 'smo', 'SMO364G0382' => 'smo', 'SMO367G0166' => 'smo', 'SMO367G1098' => 'smo', 'Solyc01g009920.3' => 'sly', 'Solyc01g099300.3' => 'sly', 'Solyc02g084700.3' => 'sly', 'Solyc03g097520.3' => 'sly', 'Solyc06g071580.3' => 'sly', 'Solyc10g081760.3' => 'sly', 'Sopen01g005480' => 'spe', 'Sopen01g042850' => 'spe', 'Sopen02g029370' => 'spe', 'Sopen03g028280' => 'spe', 'Sopen06g027870' => 'spe', 'Sopen10g032270' => 'spe', 'Sp5g18180' => 'spa', 'Sp6g12880' => 'spa', 'Sp6g30850' => 'spa', 'Sp7g22960' => 'spa', 'Sp7g34010' => 'spa', 'SpUn1326_0010' => 'spa', 'TAR371G0242' => 'tar', 'TAR622G0638' => 'tar', 'TAR628G1548' => 'tar', 'TAR629G1079' => 'tar', 'TAR629G3413' => 'tar', 'THA.LOC104804249' => 'tha', 'THA.LOC104808315' => 'tha', 'THA.LOC104809238' => 'tha', 'THA.LOC104825484' => 'tha', 'Thecc.01G025500' => 'tca', 'Thecc.03G015800' => 'tca', 'Thecc.03G018000' => 'tca', 'Thecc.03G134800' => 'tca', 'Thecc.04G014700' => 'tca', 'Thhalv10006991m.g' => 'esa', 'Thhalv10012707m.g' => 'esa', 'Thhalv10015739m.g' => 'esa', 'Thhalv10024553m.g' => 'esa', 'Thhalv10024673m.g' => 'esa', 'Thhalv10029187m.g' => 'esa', 'TPR.G12971' => 'tpr', 'TPR.G29396' => 'tpr', 'TPR.G33376' => 'tpr', 'TPR.G35508' => 'tpr', 'TPR.G35516' => 'tpr', 'TPR.G37317' => 'tpr', 'TPR.G37389' => 'tpr', 'TPR.G37523' => 'tpr', 'TPR.G559' => 'tpr', 'TWI14G0070' => 'twi', 'TWI14G0729' => 'twi', 'TWI18G0596' => 'twi', 'TWI39G0780' => 'twi', 'TWI39G0850' => 'twi', 'TWI73G1052' => 'twi', 'unitig_52.g17485' => 'ugi', 'unitig_61.g26355' => 'ugi', 'vmacro01040' => 'vma', 'vmacro16731' => 'vma', 'vmacro18270' => 'vma', 'vmacro19142' => 'vma', 'vmacro19407' => 'vma', 'vmacro19408' => 'vma', 'vmacro21899' => 'vma', 'vmacro21900' => 'vma', 'vmacro21901' => 'vma', 'VMungo0251G0490' => 'vmu', 'VMungo0251G1748' => 'vmu', 'VMungo1309G0421' => 'vmu', 'Zm00001eb086500' => 'zma', 'Zm00001eb150680' => 'zma', 'Zm00001eb162330' => 'zma', 'Zm00001eb203130' => 'zma', 'Zm00001eb369480' => 'zma', 'Zm00001eb382340' => 'zma', 'Zm00001eb416360' => 'zma' ), 'gf_id' => 'HOM05D000902', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000902' ), 'data_identifier' => 'HOM05D000902', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000902', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '663', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02470' => 'bna', 'A01p16260' => 'bna', 'A02p01680' => 'bna', 'A03p16600' => 'bna', 'A03p55660' => 'bna', 'A03p64160' => 'bna', 'A03p64170' => 'bna', 'A08p31900' => 'bna', 'A09p59530' => 'bna', 'A10p08230' => 'bna', 'A10p25090' => 'bna', 'Aa31LG3G7100' => 'aar', 'Aa31LG3G7110' => 'aar', 'Aa31LG6G13160' => 'aar', 'Aa31LG7G10770' => 'aar', 'Aa31LG7G3830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2723' => 'aag', 'Actinidia08045' => 'ach', 'Actinidia08888' => 'ach', 'Actinidia18333' => 'ach', 'Actinidia19334' => 'ach', 'Actinidia25552' => 'ach', 'Actinidia26089' => 'ach', 'Actinidia30615' => 'ach', 'Actinidia30616' => 'ach', 'Actinidia33083' => 'ach', 'Actinidia35762' => 'ach', 'Ah.02g110620' => 'amhyb', 'Ah.11g046390' => 'amhyb', 'AL1G31670' => 'aly', 'AL6G23730' => 'aly', 'AL7G14740' => 'aly', 'AL7G14750' => 'aly', 'AL7G14760' => 'aly', 'AL7G28220' => 'aly', 'AL8G24940' => 'aly', 'Aqoxy3G01665' => 'aox', 'Aqoxy3G02853' => 'aox', 'Aqoxy5G01513' => 'aox', 'Aqoxy5G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8SKA4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ75LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKDA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0LJZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7REX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZP4YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWX7I5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2QKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS0L9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPCD8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q161UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC7XCF' => 'arhy', 'AT1G19100' => 'ath', 'AT4G24970' => 'ath', 'AT4G36270' => 'ath', 'AT4G36280' => 'ath', 'AT4G36290' => 'ath', 'AT5G13130' => 'ath', 'AT5G50780' => 'ath', 'ATR0582G266' => 'atr', 'ATR0661G195' => 'atr', 'ATR1152G031' => 'atr', 'Atru.chr11.2382' => 'acertr', 'Atru.chr12.2337' => 'acertr', 'Atru.chr3.744' => 'acertr', 'Atru.chr6.1870' => 'acertr', 'Atru.chr9.2515' => 'acertr', 'AUR62004120' => 'cqu', 'AUR62005667' => 'cqu', 'AUR62007634' => 'cqu', 'AUR62008186' => 'cqu', 'AUR62008187' => 'cqu', 'AUR62008188' => 'cqu', 'AUR62027954' => 'cqu', 'AUR62028766' => 'cqu', 'AUR62028767' => 'cqu', 'AUR62028768' => 'cqu', 'AUR62028886' => 'cqu', 'AUR62029563' => 'cqu', 'AUR62038832' => 'cqu', 'BcaB01g04149' => 'bca', 'BcaB03g12940' => 'bca', 'BcaB03g13090' => 'bca', 'BcaB03g14466' => 'bca', 'BcaB05g24035' => 'bca', 'BcaC01g06050' => 'bca', 'BcaC04g19148' => 'bca', 'BcaC04g20761' => 'bca', 'BcaC06g32845' => 'bca', 'BcaC07g41274' => 'bca', 'BcaC09g50827' => 'bca', 'BcaNung00741' => 'bca', 'BcaNung00742' => 'bca', 'BcaNung01859' => 'bca', 'BcaNung03985' => 'bca', 'BcaNung03989' => 'bca', 'BcaNung05661' => 'bca', 'BolC1t00257H' => 'bol', 'BolC1t01956H' => 'bol', 'BolC2t06534H' => 'bol', 'BolC3t14334H' => 'bol', 'BolC5t30451H' => 'bol', 'BolC7t45880H' => 'bol', 'BolC7t46586H' => 'bol', 'BolC8t49301H' => 'bol', 'BolC8t51837H' => 'bol', 'BolC9t56822H' => 'bol', 'BolC9t59235H' => 'bol', 'BraA01t00234Z' => 'bra', 'BraA01t01563Z' => 'bra', 'BraA02t05147Z' => 'bra', 'BraA03t10947Z' => 'bra', 'BraA03t14633Z' => 'bra', 'BraA08t35112Z' => 'bra', 'BraA09t41330Z' => 'bra', 'BraA10t44570Z' => 'bra', 'C01p02670' => 'bna', 'C01p20260' => 'bna', 'C02p05890' => 'bna', 'C03p19530' => 'bna', 'C05p17470' => 'bna', 'C07p53900' => 'bna', 'C07p61630' => 'bna', 'C08p16800' => 'bna', 'C08p42810' => 'bna', 'C09p39480' => 'bna', 'C09p63980' => 'bna', 'CAN.G1001.7' => 'can', 'CAN.G1034.55' => 'can', 'CAN.G143.7' => 'can', 'CAN.G3340.1' => 'can', 'CAN.G358.19' => 'can', 'CAN.G373.2' => 'can', 'CAN.G674.16' => 'can', 'CAN.G674.17' => 'can', 'CAN.G674.18' => 'can', 'CAN.G732.2' => 'can', 'CAN.G732.3' => 'can', 'CAN.G993.39' => 'can', 'CANSAT01G2052' => 'cansat', 'CANSAT80G0070' => 'cansat', 'CANSAT80G0483' => 'cansat', 'CANSAT80G0625' => 'cansat', 'CARHR019690' => 'chi', 'CARHR080280' => 'chi', 'CARHR152750' => 'chi', 'CARHR152760' => 'chi', 'CARHR152770' => 'chi', 'CARHR200340' => 'chi', 'CARHR232370' => 'chi', 'CARHR244670' => 'chi', 'CARHR244680' => 'chi', 'CARHR257520' => 'chi', 'Carub.0001s1872' => 'cru', 'Carub.0006s1130' => 'cru', 'Carub.0007s0396' => 'cru', 'Carub.0007s0397' => 'cru', 'Carub.0007s1608' => 'cru', 'Carub.0008s1068' => 'cru', 'Carub.0008s1077' => 'cru', 'Ca_16158_v3' => 'car', 'Ca_17571_v3' => 'car', 'Ca_21936_v3' => 'car', 'Ca_22350_v3' => 'car', 'CBR_g22445' => 'cbr', 'CBR_g26290' => 'cbr', 'Cc04_g09610' => 'ccan', 'Cc04_g12280' => 'ccan', 'Cc07_g10230' => 'ccan', 'CDE02G0093' => 'cde', 'CDE02G0701' => 'cde', 'CDE04G1050' => 'cde', 'CDE05G1833' => 'cde', 'CDE05G3058' => 'cde', 'CDE05G3380' => 'cde', 'CDE06G0536' => 'cde', 'Cfa006923' => 'cfa', 'Cfa009402' => 'cfa', 'Cfa018751' => 'cfa', 'Cfa019164' => 'cfa', 'Cfa022935' => 'cfa', 'Ciclev10019081m.g' => 'ccl', 'Ciclev10025076m.g' => 'ccl', 'Ciclev10030712m.g' => 'ccl', 'Ciclev10033760m.g' => 'ccl', 'CiPaw.05G105600' => 'cil', 'CiPaw.08G136700' => 'cil', 'CiPaw.11G003900' => 'cil', 'CiPaw.11G023700' => 'cil', 'CiPaw.12G003700' => 'cil', 'ClCG06G017100' => 'cla', 'ClCG06G018110' => 'cla', 'ClCG07G008800' => 'cla', 'ClCG07G015330' => 'cla', 'COL.COLO4_13698' => 'col', 'COL.COLO4_16659' => 'col', 'COL.COLO4_21986' => 'col', 'COL.COLO4_24049' => 'col', 'COL.COLO4_29061' => 'col', 'COL.COLO4_29075' => 'col', 'COL.COLO4_30094' => 'col', 'Cpa.g.c33689' => 'cpa', 'Cpa.g.sc108.39' => 'cpa', 'Cpa.g.sc108.41' => 'cpa', 'Cpa.g.sc1163.1' => 'cpa', 'Cpa.g.sc4.155' => 'cpa', 'Cpa.g.sc6.194' => 'cpa', 'CsaV3_1G000340' => 'csa', 'CsaV3_1G001400' => 'csa', 'CsaV3_4G002220' => 'csa', 'CsaV3_4G005370' => 'csa', 'CSS0007487' => 'camsi', 'CSS0008066' => 'camsi', 'CSS0009120' => 'camsi', 'CSS0015512' => 'camsi', 'CSS0022409' => 'camsi', 'CSS0025358' => 'camsi', 'CSS0044547' => 'camsi', 'DCAR_013057' => 'dca', 'DCAR_015058' => 'dca', 'DCAR_016027' => 'dca', 'DCAR_017327' => 'dca', 'DCAR_020743' => 'dca', 'DCAR_026157' => 'dca', 'DCAR_032339' => 'dca', 'DCAR_032340' => 'dca', 'Dinv11200' => 'din', 'Dinv11201' => 'din', 'Dinv20631' => 'din', 'Dinv23182' => 'din', 'Dinv33466' => 'din', 'Dinv33583' => 'din', 'Dinv38565' => 'din', 'Duzib068G0200' => 'dzi', 'Duzib147G0132' => 'dzi', 'Duzib147G0635' => 'dzi', 'Duzib205G1670' => 'dzi', 'Duzib251G0606' => 'dzi', 'ECA232G3336' => 'eca', 'ECA232G3763' => 'eca', 'ECA232G4845' => 'eca', 'ECA234G1607' => 'eca', 'ECA246G0932' => 'eca', 'ECA247G0781' => 'eca', 'ECA247G1932' => 'eca', 'ECA247G2079' => 'eca', 'ECA247G3338' => 'eca', 'ECA247G4115' => 'eca', 'EL10Ac3g06552' => 'bvu', 'EL10Ac5g10721' => 'bvu', 'EL10Ac5g10722' => 'bvu', 'EL10Ac5g10723' => 'bvu', 'EL10Ac5g11361' => 'bvu', 'EL10Ac6g13553' => 'bvu', 'EL10As8g23872' => 'bvu', 'Eucgr.B00250' => 'egr', 'Eucgr.B00251' => 'egr', 'Eucgr.B03533' => 'egr', 'Eucgr.I02381' => 'egr', 'Eucgr.K02700' => 'egr', 'FAN02G0174' => 'fan', 'FAN02G3146' => 'fan', 'FAN04G1672' => 'fan', 'FAN04G2273' => 'fan', 'FAN05G2791' => 'fan', 'FAN05G4035' => 'fan', 'FAN07G0834' => 'fan', 'FAN08G1198' => 'fan', 'FAN09G4182' => 'fan', 'FAN12G0496' => 'fan', 'FAN13G1027' => 'fan', 'FAN13G2951' => 'fan', 'FAN14G0705' => 'fan', 'FAN14G0720' => 'fan', 'FAN17G0201' => 'fan', 'FAN17G2665' => 'fan', 'FAN18G1456' => 'fan', 'FAN18G1525' => 'fan', 'FAN18G3500' => 'fan', 'FAN28G2670' => 'fan', 'FvH4_1g12391' => 'fve', 'FvH4_4g23220' => 'fve', 'FvH4_5g08810' => 'fve', 'FvH4_5g28960' => 'fve', 'FvH4_6g42820' => 'fve', 'FvH4_6g51110' => 'fve', 'Glyma.02G051802' => 'gma', 'Glyma.04G185300' => 'gma', 'Glyma.05G202900' => 'gma', 'Glyma.08G010300' => 'gma', 'Glyma.16G131900' => 'gma', 'Glyma.17G087900' => 'gma', 'Gohir.A07G048600' => 'ghi', 'Gohir.A11G179000' => 'ghi', 'Gohir.A12G140900' => 'ghi', 'Gohir.A12G140950' => 'ghi', 'Gohir.A12G191700' => 'ghi', 'Gohir.A13G086300' => 'ghi', 'Gohir.D07G052900' => 'ghi', 'Gohir.D11G186600' => 'ghi', 'Gohir.D12G145575' => 'ghi', 'Gohir.D12G145650' => 'ghi', 'Gohir.D12G145725' => 'ghi', 'Gohir.D12G194050' => 'ghi', 'Gohir.D13G091800' => 'ghi', 'Gorai.001G055900' => 'gra', 'Gorai.007G198400' => 'gra', 'Gorai.008G157000' => 'gra', 'Gorai.008G157100' => 'gra', 'Gorai.008G208700' => 'gra', 'Gorai.010G138700' => 'gra', 'GSVIVG01000977001' => 'vvi', 'GSVIVG01007708001' => 'vvi', 'GSVIVG01008587001' => 'vvi', 'GSVIVG01018849001' => 'vvi', 'GSVIVG01032432001' => 'vvi', 'HanXRQChr02g0034131' => 'han', 'HanXRQChr02g0035981' => 'han', 'HanXRQChr02g0035991' => 'han', 'HanXRQChr05g0155611' => 'han', 'HanXRQChr05g0155621' => 'han', 'HanXRQChr08g0236501' => 'han', 'HanXRQChr09g0261321' => 'han', 'HanXRQChr09g0272081' => 'han', 'HanXRQChr10g0310741' => 'han', 'HanXRQChr11g0325591' => 'han', 'HanXRQChr12g0385691' => 'han', 'HanXRQChr13g0387801' => 'han', 'HanXRQChr15g0463011' => 'han', 'Haze_03826' => 'cav', 'Haze_03827' => 'cav', 'Haze_07183' => 'cav', 'Haze_07537' => 'cav', 'Haze_07539' => 'cav', 'Haze_12461' => 'cav', 'Haze_16115' => 'cav', 'Haze_16808' => 'cav', 'Haze_18531' => 'cav', 'Hma1.2p1_0046F.1_g026700' => 'hma', 'Hma1.2p1_0046F.1_g026710' => 'hma', 'Hma1.2p1_0168F.1_g074340' => 'hma', 'Hma1.2p1_0266F.1_g107030' => 'hma', 'Hma1.2p1_0266F.1_g107060' => 'hma', 'Hma1.2p1_0275F.1_g110510' => 'hma', 'Hma1.2p1_0592F.1_g185490' => 'hma', 'Hma1.2p1_0592F.1_g185500' => 'hma', 'Hma1.2p1_0592F.1_g185510' => 'hma', 'Hma1.2p1_0592F.1_g185520' => 'hma', 'Hma1.2p1_0592F.1_g185530' => 'hma', 'Hma1.2p1_0818F.1_g223450' => 'hma', 'HPP92_009708' => 'vpl', 'HPP92_009793' => 'vpl', 'HPP92_009796' => 'vpl', 'HPP92_009797' => 'vpl', 'HPP92_014940' => 'vpl', 'HPP92_014988' => 'vpl', 'Hund02463' => 'sun', 'Hund02760' => 'sun', 'Hund05071' => 'sun', 'Hund10108' => 'sun', 'Hund11204' => 'sun', 'Hund14016' => 'sun', 'Hund16464' => 'sun', 'Lalb_Chr09g0333391' => 'lal', 'Lalb_Chr11g0070461' => 'lal', 'Lalb_Chr12g0201671' => 'lal', 'Lalb_Chr13g0297161' => 'lal', 'Lj1g0002823' => 'lja', 'Lj3C1074T6' => 'lonja', 'Lj4A212T28' => 'lonja', 'Lj4g0005516' => 'lja', 'Lj4g0013705' => 'lja', 'Lj4g0027865' => 'lja', 'Lj5C92G16' => 'lonja', 'Lj5C92T12' => 'lonja', 'Lj7C596T3' => 'lonja', 'Lj9A446G59' => 'lonja', 'Lj9A482G21' => 'lonja', 'Lsat_1_v5_gn_1_28261' => 'lsa', 'Lsat_1_v5_gn_1_28281' => 'lsa', 'Lsat_1_v5_gn_1_32721' => 'lsa', 'Lsat_1_v5_gn_4_151760' => 'lsa', 'Lsat_1_v5_gn_4_2120' => 'lsa', 'Lsat_1_v5_gn_4_75761' => 'lsa', 'Lsat_1_v5_gn_5_10920' => 'lsa', 'Manes.02G099900' => 'mes', 'Manes.11G096200' => 'mes', 'Manes.12G007200' => 'mes', 'Manes.14G048300' => 'mes', 'Manes.17G114700' => 'mes', 'Mapoly0002s0070' => 'mpo', 'Mapoly0029s0099' => 'mpo', 'MBI07_g24742_MAGBIO' => 'mbi', 'MBI10_g27988_MAGBIO' => 'mbi', 'MBI11_g13057_MAGBIO' => 'mbi', 'MD02G1137200' => 'mdo', 'MD06G1137200' => 'mdo', 'MD07G1122300' => 'mdo', 'MD09G1078200' => 'mdo', 'MD13G1123700' => 'mdo', 'MD14G1151900' => 'mdo', 'MD17G1030900' => 'mdo', 'MD17G1068200' => 'mdo', 'MD17G1068600' => 'mdo', 'Medtr3g077540' => 'mtr', 'Medtr4g105530' => 'mtr', 'Medtr8g076580' => 'mtr', 'Medtr8g076590' => 'mtr', 'Medtr8g096410' => 'mtr', 'MELO3C016411.2' => 'cme', 'MELO3C017780.2' => 'cme', 'MELO3C022560.2' => 'cme', 'MELO3C026187.2' => 'cme', 'MELO3C026286.2' => 'cme', 'MELO3C032854.2' => 'cme', 'Migut.H02495' => 'egut', 'Migut.I00561' => 'egut', 'Migut.K01015' => 'egut', 'Migut.K01016' => 'egut', 'Migut.L00743' => 'egut', 'Migut.L00744' => 'egut', 'Migut.L00746' => 'egut', 'Migut.L00798' => 'egut', 'Migut.L00799' => 'egut', 'Migut.N02096' => 'egut', 'MSTRG.11259' => 'ama', 'MSTRG.23142' => 'ama', 'MSTRG.2499' => 'ama', 'Nitab4.5_0000003g0730' => 'nta', 'Nitab4.5_0000137g0020' => 'nta', 'Nitab4.5_0000721g0210' => 'nta', 'Nitab4.5_0000723g0050' => 'nta', 'Nitab4.5_0000913g0070' => 'nta', 'Nitab4.5_0001332g0040' => 'nta', 'Nitab4.5_0001771g0050' => 'nta', 'Nitab4.5_0001918g0050' => 'nta', 'Nitab4.5_0002686g0030' => 'nta', 'Nitab4.5_0003156g0020' => 'nta', 'Nitab4.5_0003383g0040' => 'nta', 'Nitab4.5_0003918g0010' => 'nta', 'Nitab4.5_0006760g0010' => 'nta', 'Nn1g05981' => 'nnu', 'Nn1g06288' => 'nnu', 'Nn3g16371' => 'nnu', 'Nn3g16786' => 'nnu', 'Nn4g22232' => 'nnu', 'Oeu005144.1' => 'oeu', 'Oeu005145.1' => 'oeu', 'Oeu011348.1' => 'oeu', 'Oeu016415.1' => 'oeu', 'Oeu023501.1' => 'oeu', 'Oeu044473.1' => 'oeu', 'Oeu048892.2' => 'oeu', 'Os01g0549200' => 'osa', 'Os02g0469300' => 'osa', 'Os04g0311100' => 'osa', 'Os06g0474900' => 'osa', 'Os10g0181700' => 'osa', 'Os11g0454800' => 'osa', 'Peaxi162Scf00037g00714' => 'pax', 'Peaxi162Scf00084g01217' => 'pax', 'Peaxi162Scf00257g00217' => 'pax', 'Peaxi162Scf00516g00215' => 'pax', 'Peaxi162Scf00689g00123' => 'pax', 'PGR044G2719' => 'pgr', 'PGR083G1360' => 'pgr', 'PGR102G2849' => 'pgr', 'PGR119G2534' => 'pgr', 'PGSC0003DMG400003538' => 'stu', 'PGSC0003DMG400028138' => 'stu', 'PGSC0003DMG400031732' => 'stu', 'PGSC0003DMG400038165' => 'stu', 'Phvul.002G284600' => 'pvu', 'Phvul.003G258200' => 'pvu', 'Phvul.009G176500' => 'pvu', 'Potri.003G167201' => 'ptr', 'Potri.005G118400' => 'ptr', 'Potri.012G089000' => 'ptr', 'Potri.012G102800' => 'ptr', 'Potri.015G079400' => 'ptr', 'Potri.015G100900' => 'ptr', 'Pp3c14_9810' => 'ppa', 'Pp3c15_10450' => 'ppa', 'Pp3c20_19150' => 'ppa', 'Pp3c23_12740' => 'ppa', 'Pp3c23_6310' => 'ppa', 'Pp3c24_3720' => 'ppa', 'Pp3c27_2580' => 'ppa', 'Pp3c9_8990' => 'ppa', 'PRCOL_00002854' => 'pco', 'Prupe.1G221200' => 'ppe', 'Prupe.3G289000' => 'ppe', 'Prupe.5G147000' => 'ppe', 'Prupe.6G157300' => 'ppe', 'Prupe.7G163400' => 'ppe', 'Psat0s2177g0040' => 'psa', 'Psat3g174760' => 'psa', 'Psat3g192160' => 'psa', 'Psat4g058520' => 'psa', 'Psat4g096840' => 'psa', 'Psat7g037320' => 'psa', 'PSO017G1274' => 'pso', 'PSO017G5166' => 'pso', 'PSO063G4558' => 'pso', 'PSO170G4458' => 'pso', 'PSO170G5005' => 'pso', 'PSO210G6156' => 'pso', 'PSO210G6635' => 'pso', 'PSO210G7397' => 'pso', 'PSO210G7700' => 'pso', 'PSO455G0035' => 'pso', 'PSO455G0180' => 'pso', 'PSO478G4515' => 'pso', 'PSO832G1305' => 'pso', 'PSO832G3489' => 'pso', 'QL02p075247' => 'qlo', 'QL03p051148' => 'qlo', 'QL05p010313' => 'qlo', 'QL06p034627' => 'qlo', 'QL10p001889' => 'qlo', 'QL10p010846' => 'qlo', 'RcHm_v2.0_Chr1g0350621' => 'rch', 'RcHm_v2.0_Chr1g0350641' => 'rch', 'RcHm_v2.0_Chr2g0092891' => 'rch', 'RcHm_v2.0_Chr2g0100251' => 'rch', 'RcHm_v2.0_Chr2g0158661' => 'rch', 'RcHm_v2.0_Chr2g0172741' => 'rch', 'RcHm_v2.0_Chr4g0429571' => 'rch', 'RcHm_v2.0_Chr5g0042471' => 'rch', 'RcHm_v2.0_Chr7g0189451' => 'rch', 'Rhsim08G0052000' => 'rsi', 'Rhsim08G0174400' => 'rsi', 'Rhsim08G0193200' => 'rsi', 'Rhsim10G0214800' => 'rsi', 'Rhsim10G0214900' => 'rsi', 'Rhsim10G0215000' => 'rsi', 'Rhsim12G0022900' => 'rsi', 'Rhsim12G0177500' => 'rsi', 'Rhsim12G0177700' => 'rsi', 'Sabra03G0122600' => 'sbr', 'Sabra05G0097400' => 'sbr', 'Sabra12G0064100' => 'sbr', 'Sabra15G0121300' => 'sbr', 'SalBow2G0642' => 'sbo', 'SalBow5G2667' => 'sbo', 'SalBow5G4873' => 'sbo', 'SalBow8G2395' => 'sbo', 'Sc03g0003290' => 'sci', 'Sc10g0010130' => 'sci', 'Sc22g0003650' => 'sci', 'Sed0001603' => 'sed', 'Sed0004259' => 'sed', 'Sed0006789' => 'sed', 'Sed0011838' => 'sed', 'Sed0012964' => 'sed', 'Sed0016383' => 'sed', 'Sed0019010' => 'sed', 'Sed0020188' => 'sed', 'SEGI_04702' => 'sgi', 'SEGI_17231' => 'sgi', 'SEGI_18877' => 'sgi', 'SEGI_25196' => 'sgi', 'SEGI_25515' => 'sgi', 'SEGI_28445' => 'sgi', 'SEGI_37452' => 'sgi', 'SGA_v2.0_scaffold188G40336' => 'sas', 'SGA_v2.0_scaffold228G43247' => 'sas', 'SGA_v2.0_scaffold280G46853' => 'sas', 'SGA_v2.0_scaffold34G13808' => 'sas', 'SGA_v2.0_scaffold40G15576' => 'sas', 'SGA_v2.0_scaffold611G53188' => 'sas', 'SGA_v2.0_scaffold78G25461' => 'sas', 'SGA_v2.0_scaffold90G27888' => 'sas', 'SHI08601' => 'shi', 'SHI08606' => 'shi', 'SHI17117' => 'shi', 'SHI17119' => 'shi', 'SMO118G0201' => 'smo', 'SMO169G0247' => 'smo', 'SMO176G0006' => 'smo', 'SMO176G0015' => 'smo', 'SMO202G0006' => 'smo', 'SMO240G0050' => 'smo', 'SMO286G0009' => 'smo', 'SMO338G0033' => 'smo', 'SMO356G0533' => 'smo', 'SMO364G0382' => 'smo', 'SMO367G0166' => 'smo', 'SMO367G1098' => 'smo', 'Solyc01g009920.3' => 'sly', 'Solyc01g099300.3' => 'sly', 'Solyc02g084700.3' => 'sly', 'Solyc03g097520.3' => 'sly', 'Solyc06g071580.3' => 'sly', 'Solyc10g081760.3' => 'sly', 'Sopen01g005480' => 'spe', 'Sopen01g042850' => 'spe', 'Sopen02g029370' => 'spe', 'Sopen03g028280' => 'spe', 'Sopen06g027870' => 'spe', 'Sopen10g032270' => 'spe', 'Sp5g18180' => 'spa', 'Sp6g12880' => 'spa', 'Sp6g30850' => 'spa', 'Sp7g22960' => 'spa', 'Sp7g34010' => 'spa', 'SpUn1326_0010' => 'spa', 'TAR371G0242' => 'tar', 'TAR622G0638' => 'tar', 'TAR628G1548' => 'tar', 'TAR629G1079' => 'tar', 'TAR629G3413' => 'tar', 'THA.LOC104804249' => 'tha', 'THA.LOC104808315' => 'tha', 'THA.LOC104809238' => 'tha', 'THA.LOC104825484' => 'tha', 'Thecc.01G025500' => 'tca', 'Thecc.03G015800' => 'tca', 'Thecc.03G018000' => 'tca', 'Thecc.03G134800' => 'tca', 'Thecc.04G014700' => 'tca', 'Thhalv10006991m.g' => 'esa', 'Thhalv10012707m.g' => 'esa', 'Thhalv10015739m.g' => 'esa', 'Thhalv10024553m.g' => 'esa', 'Thhalv10024673m.g' => 'esa', 'Thhalv10029187m.g' => 'esa', 'TPR.G12971' => 'tpr', 'TPR.G29396' => 'tpr', 'TPR.G33376' => 'tpr', 'TPR.G35508' => 'tpr', 'TPR.G35516' => 'tpr', 'TPR.G37317' => 'tpr', 'TPR.G37389' => 'tpr', 'TPR.G37523' => 'tpr', 'TPR.G559' => 'tpr', 'TWI14G0070' => 'twi', 'TWI14G0729' => 'twi', 'TWI18G0596' => 'twi', 'TWI39G0780' => 'twi', 'TWI39G0850' => 'twi', 'TWI73G1052' => 'twi', 'unitig_52.g17485' => 'ugi', 'unitig_61.g26355' => 'ugi', 'vmacro01040' => 'vma', 'vmacro16731' => 'vma', 'vmacro18270' => 'vma', 'vmacro19142' => 'vma', 'vmacro19407' => 'vma', 'vmacro19408' => 'vma', 'vmacro21899' => 'vma', 'vmacro21900' => 'vma', 'vmacro21901' => 'vma', 'VMungo0251G0490' => 'vmu', 'VMungo0251G1748' => 'vmu', 'VMungo1309G0421' => 'vmu', 'Zm00001eb086500' => 'zma', 'Zm00001eb150680' => 'zma', 'Zm00001eb162330' => 'zma', 'Zm00001eb203130' => 'zma', 'Zm00001eb369480' => 'zma', 'Zm00001eb382340' => 'zma', 'Zm00001eb416360' => 'zma' ) $gf_id = 'HOM05D000902' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000902' ) $data_identifier = 'HOM05D000902' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 13, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 10, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 6, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 9, 'hma' => (int) 12, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 4, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 6, 'ppa' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 6, 'rch' => (int) 9, 'rsi' => (int) 9, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 12, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 3, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416360' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000902', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '663', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02470' => 'bna', 'A01p16260' => 'bna', 'A02p01680' => 'bna', 'A03p16600' => 'bna', 'A03p55660' => 'bna', 'A03p64160' => 'bna', 'A03p64170' => 'bna', 'A08p31900' => 'bna', 'A09p59530' => 'bna', 'A10p08230' => 'bna', 'A10p25090' => 'bna', 'Aa31LG3G7100' => 'aar', 'Aa31LG3G7110' => 'aar', 'Aa31LG6G13160' => 'aar', 'Aa31LG7G10770' => 'aar', 'Aa31LG7G3830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2723' => 'aag', 'Actinidia08045' => 'ach', 'Actinidia08888' => 'ach', 'Actinidia18333' => 'ach', 'Actinidia19334' => 'ach', 'Actinidia25552' => 'ach', 'Actinidia26089' => 'ach', 'Actinidia30615' => 'ach', 'Actinidia30616' => 'ach', 'Actinidia33083' => 'ach', 'Actinidia35762' => 'ach', 'Ah.02g110620' => 'amhyb', 'Ah.11g046390' => 'amhyb', 'AL1G31670' => 'aly', 'AL6G23730' => 'aly', 'AL7G14740' => 'aly', 'AL7G14750' => 'aly', 'AL7G14760' => 'aly', 'AL7G28220' => 'aly', 'AL8G24940' => 'aly', 'Aqoxy3G01665' => 'aox', 'Aqoxy3G02853' => 'aox', 'Aqoxy5G01513' => 'aox', 'Aqoxy5G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8SKA4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ75LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKDA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0LJZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7REX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZP4YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWX7I5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2QKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS0L9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPCD8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q161UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC7XCF' => 'arhy', 'AT1G19100' => 'ath', 'AT4G24970' => 'ath', 'AT4G36270' => 'ath', 'AT4G36280' => 'ath', 'AT4G36290' => 'ath', 'AT5G13130' => 'ath', 'AT5G50780' => 'ath', 'ATR0582G266' => 'atr', 'ATR0661G195' => 'atr', 'ATR1152G031' => 'atr', 'Atru.chr11.2382' => 'acertr', 'Atru.chr12.2337' => 'acertr', 'Atru.chr3.744' => 'acertr', 'Atru.chr6.1870' => 'acertr', 'Atru.chr9.2515' => 'acertr', 'AUR62004120' => 'cqu', 'AUR62005667' => 'cqu', 'AUR62007634' => 'cqu', 'AUR62008186' => 'cqu', 'AUR62008187' => 'cqu', 'AUR62008188' => 'cqu', 'AUR62027954' => 'cqu', 'AUR62028766' => 'cqu', 'AUR62028767' => 'cqu', 'AUR62028768' => 'cqu', 'AUR62028886' => 'cqu', 'AUR62029563' => 'cqu', 'AUR62038832' => 'cqu', 'BcaB01g04149' => 'bca', 'BcaB03g12940' => 'bca', 'BcaB03g13090' => 'bca', 'BcaB03g14466' => 'bca', 'BcaB05g24035' => 'bca', 'BcaC01g06050' => 'bca', 'BcaC04g19148' => 'bca', 'BcaC04g20761' => 'bca', 'BcaC06g32845' => 'bca', 'BcaC07g41274' => 'bca', 'BcaC09g50827' => 'bca', 'BcaNung00741' => 'bca', 'BcaNung00742' => 'bca', 'BcaNung01859' => 'bca', 'BcaNung03985' => 'bca', 'BcaNung03989' => 'bca', 'BcaNung05661' => 'bca', 'BolC1t00257H' => 'bol', 'BolC1t01956H' => 'bol', 'BolC2t06534H' => 'bol', 'BolC3t14334H' => 'bol', 'BolC5t30451H' => 'bol', 'BolC7t45880H' => 'bol', 'BolC7t46586H' => 'bol', 'BolC8t49301H' => 'bol', 'BolC8t51837H' => 'bol', 'BolC9t56822H' => 'bol', 'BolC9t59235H' => 'bol', 'BraA01t00234Z' => 'bra', 'BraA01t01563Z' => 'bra', 'BraA02t05147Z' => 'bra', 'BraA03t10947Z' => 'bra', 'BraA03t14633Z' => 'bra', 'BraA08t35112Z' => 'bra', 'BraA09t41330Z' => 'bra', 'BraA10t44570Z' => 'bra', 'C01p02670' => 'bna', 'C01p20260' => 'bna', 'C02p05890' => 'bna', 'C03p19530' => 'bna', 'C05p17470' => 'bna', 'C07p53900' => 'bna', 'C07p61630' => 'bna', 'C08p16800' => 'bna', 'C08p42810' => 'bna', 'C09p39480' => 'bna', 'C09p63980' => 'bna', 'CAN.G1001.7' => 'can', 'CAN.G1034.55' => 'can', 'CAN.G143.7' => 'can', 'CAN.G3340.1' => 'can', 'CAN.G358.19' => 'can', 'CAN.G373.2' => 'can', 'CAN.G674.16' => 'can', 'CAN.G674.17' => 'can', 'CAN.G674.18' => 'can', 'CAN.G732.2' => 'can', 'CAN.G732.3' => 'can', 'CAN.G993.39' => 'can', 'CANSAT01G2052' => 'cansat', 'CANSAT80G0070' => 'cansat', 'CANSAT80G0483' => 'cansat', 'CANSAT80G0625' => 'cansat', 'CARHR019690' => 'chi', 'CARHR080280' => 'chi', 'CARHR152750' => 'chi', 'CARHR152760' => 'chi', 'CARHR152770' => 'chi', 'CARHR200340' => 'chi', 'CARHR232370' => 'chi', 'CARHR244670' => 'chi', 'CARHR244680' => 'chi', 'CARHR257520' => 'chi', 'Carub.0001s1872' => 'cru', 'Carub.0006s1130' => 'cru', 'Carub.0007s0396' => 'cru', 'Carub.0007s0397' => 'cru', 'Carub.0007s1608' => 'cru', 'Carub.0008s1068' => 'cru', 'Carub.0008s1077' => 'cru', 'Ca_16158_v3' => 'car', 'Ca_17571_v3' => 'car', 'Ca_21936_v3' => 'car', 'Ca_22350_v3' => 'car', 'CBR_g22445' => 'cbr', 'CBR_g26290' => 'cbr', 'Cc04_g09610' => 'ccan', 'Cc04_g12280' => 'ccan', 'Cc07_g10230' => 'ccan', 'CDE02G0093' => 'cde', 'CDE02G0701' => 'cde', 'CDE04G1050' => 'cde', 'CDE05G1833' => 'cde', 'CDE05G3058' => 'cde', 'CDE05G3380' => 'cde', 'CDE06G0536' => 'cde', 'Cfa006923' => 'cfa', 'Cfa009402' => 'cfa', 'Cfa018751' => 'cfa', 'Cfa019164' => 'cfa', 'Cfa022935' => 'cfa', 'Ciclev10019081m.g' => 'ccl', 'Ciclev10025076m.g' => 'ccl', 'Ciclev10030712m.g' => 'ccl', 'Ciclev10033760m.g' => 'ccl', 'CiPaw.05G105600' => 'cil', 'CiPaw.08G136700' => 'cil', 'CiPaw.11G003900' => 'cil', 'CiPaw.11G023700' => 'cil', 'CiPaw.12G003700' => 'cil', 'ClCG06G017100' => 'cla', 'ClCG06G018110' => 'cla', 'ClCG07G008800' => 'cla', 'ClCG07G015330' => 'cla', 'COL.COLO4_13698' => 'col', 'COL.COLO4_16659' => 'col', 'COL.COLO4_21986' => 'col', 'COL.COLO4_24049' => 'col', 'COL.COLO4_29061' => 'col', 'COL.COLO4_29075' => 'col', 'COL.COLO4_30094' => 'col', 'Cpa.g.c33689' => 'cpa', 'Cpa.g.sc108.39' => 'cpa', 'Cpa.g.sc108.41' => 'cpa', 'Cpa.g.sc1163.1' => 'cpa', 'Cpa.g.sc4.155' => 'cpa', 'Cpa.g.sc6.194' => 'cpa', 'CsaV3_1G000340' => 'csa', 'CsaV3_1G001400' => 'csa', 'CsaV3_4G002220' => 'csa', 'CsaV3_4G005370' => 'csa', 'CSS0007487' => 'camsi', 'CSS0008066' => 'camsi', 'CSS0009120' => 'camsi', 'CSS0015512' => 'camsi', 'CSS0022409' => 'camsi', 'CSS0025358' => 'camsi', 'CSS0044547' => 'camsi', 'DCAR_013057' => 'dca', 'DCAR_015058' => 'dca', 'DCAR_016027' => 'dca', 'DCAR_017327' => 'dca', 'DCAR_020743' => 'dca', 'DCAR_026157' => 'dca', 'DCAR_032339' => 'dca', 'DCAR_032340' => 'dca', 'Dinv11200' => 'din', 'Dinv11201' => 'din', 'Dinv20631' => 'din', 'Dinv23182' => 'din', 'Dinv33466' => 'din', 'Dinv33583' => 'din', 'Dinv38565' => 'din', 'Duzib068G0200' => 'dzi', 'Duzib147G0132' => 'dzi', 'Duzib147G0635' => 'dzi', 'Duzib205G1670' => 'dzi', 'Duzib251G0606' => 'dzi', 'ECA232G3336' => 'eca', 'ECA232G3763' => 'eca', 'ECA232G4845' => 'eca', 'ECA234G1607' => 'eca', 'ECA246G0932' => 'eca', 'ECA247G0781' => 'eca', 'ECA247G1932' => 'eca', 'ECA247G2079' => 'eca', 'ECA247G3338' => 'eca', 'ECA247G4115' => 'eca', 'EL10Ac3g06552' => 'bvu', 'EL10Ac5g10721' => 'bvu', 'EL10Ac5g10722' => 'bvu', 'EL10Ac5g10723' => 'bvu', 'EL10Ac5g11361' => 'bvu', 'EL10Ac6g13553' => 'bvu', 'EL10As8g23872' => 'bvu', 'Eucgr.B00250' => 'egr', 'Eucgr.B00251' => 'egr', 'Eucgr.B03533' => 'egr', 'Eucgr.I02381' => 'egr', 'Eucgr.K02700' => 'egr', 'FAN02G0174' => 'fan', 'FAN02G3146' => 'fan', 'FAN04G1672' => 'fan', 'FAN04G2273' => 'fan', 'FAN05G2791' => 'fan', 'FAN05G4035' => 'fan', 'FAN07G0834' => 'fan', 'FAN08G1198' => 'fan', 'FAN09G4182' => 'fan', 'FAN12G0496' => 'fan', 'FAN13G1027' => 'fan', 'FAN13G2951' => 'fan', 'FAN14G0705' => 'fan', 'FAN14G0720' => 'fan', 'FAN17G0201' => 'fan', 'FAN17G2665' => 'fan', 'FAN18G1456' => 'fan', 'FAN18G1525' => 'fan', 'FAN18G3500' => 'fan', 'FAN28G2670' => 'fan', 'FvH4_1g12391' => 'fve', 'FvH4_4g23220' => 'fve', 'FvH4_5g08810' => 'fve', 'FvH4_5g28960' => 'fve', 'FvH4_6g42820' => 'fve', 'FvH4_6g51110' => 'fve', 'Glyma.02G051802' => 'gma', 'Glyma.04G185300' => 'gma', 'Glyma.05G202900' => 'gma', 'Glyma.08G010300' => 'gma', 'Glyma.16G131900' => 'gma', 'Glyma.17G087900' => 'gma', 'Gohir.A07G048600' => 'ghi', 'Gohir.A11G179000' => 'ghi', 'Gohir.A12G140900' => 'ghi', 'Gohir.A12G140950' => 'ghi', 'Gohir.A12G191700' => 'ghi', 'Gohir.A13G086300' => 'ghi', 'Gohir.D07G052900' => 'ghi', 'Gohir.D11G186600' => 'ghi', 'Gohir.D12G145575' => 'ghi', 'Gohir.D12G145650' => 'ghi', 'Gohir.D12G145725' => 'ghi', 'Gohir.D12G194050' => 'ghi', 'Gohir.D13G091800' => 'ghi', 'Gorai.001G055900' => 'gra', 'Gorai.007G198400' => 'gra', 'Gorai.008G157000' => 'gra', 'Gorai.008G157100' => 'gra', 'Gorai.008G208700' => 'gra', 'Gorai.010G138700' => 'gra', 'GSVIVG01000977001' => 'vvi', 'GSVIVG01007708001' => 'vvi', 'GSVIVG01008587001' => 'vvi', 'GSVIVG01018849001' => 'vvi', 'GSVIVG01032432001' => 'vvi', 'HanXRQChr02g0034131' => 'han', 'HanXRQChr02g0035981' => 'han', 'HanXRQChr02g0035991' => 'han', 'HanXRQChr05g0155611' => 'han', 'HanXRQChr05g0155621' => 'han', 'HanXRQChr08g0236501' => 'han', 'HanXRQChr09g0261321' => 'han', 'HanXRQChr09g0272081' => 'han', 'HanXRQChr10g0310741' => 'han', 'HanXRQChr11g0325591' => 'han', 'HanXRQChr12g0385691' => 'han', 'HanXRQChr13g0387801' => 'han', 'HanXRQChr15g0463011' => 'han', 'Haze_03826' => 'cav', 'Haze_03827' => 'cav', 'Haze_07183' => 'cav', 'Haze_07537' => 'cav', 'Haze_07539' => 'cav', 'Haze_12461' => 'cav', 'Haze_16115' => 'cav', 'Haze_16808' => 'cav', 'Haze_18531' => 'cav', 'Hma1.2p1_0046F.1_g026700' => 'hma', 'Hma1.2p1_0046F.1_g026710' => 'hma', 'Hma1.2p1_0168F.1_g074340' => 'hma', 'Hma1.2p1_0266F.1_g107030' => 'hma', 'Hma1.2p1_0266F.1_g107060' => 'hma', 'Hma1.2p1_0275F.1_g110510' => 'hma', 'Hma1.2p1_0592F.1_g185490' => 'hma', 'Hma1.2p1_0592F.1_g185500' => 'hma', 'Hma1.2p1_0592F.1_g185510' => 'hma', 'Hma1.2p1_0592F.1_g185520' => 'hma', 'Hma1.2p1_0592F.1_g185530' => 'hma', 'Hma1.2p1_0818F.1_g223450' => 'hma', 'HPP92_009708' => 'vpl', 'HPP92_009793' => 'vpl', 'HPP92_009796' => 'vpl', 'HPP92_009797' => 'vpl', 'HPP92_014940' => 'vpl', 'HPP92_014988' => 'vpl', 'Hund02463' => 'sun', 'Hund02760' => 'sun', 'Hund05071' => 'sun', 'Hund10108' => 'sun', 'Hund11204' => 'sun', 'Hund14016' => 'sun', 'Hund16464' => 'sun', 'Lalb_Chr09g0333391' => 'lal', 'Lalb_Chr11g0070461' => 'lal', 'Lalb_Chr12g0201671' => 'lal', 'Lalb_Chr13g0297161' => 'lal', 'Lj1g0002823' => 'lja', 'Lj3C1074T6' => 'lonja', 'Lj4A212T28' => 'lonja', 'Lj4g0005516' => 'lja', 'Lj4g0013705' => 'lja', 'Lj4g0027865' => 'lja', 'Lj5C92G16' => 'lonja', 'Lj5C92T12' => 'lonja', 'Lj7C596T3' => 'lonja', 'Lj9A446G59' => 'lonja', 'Lj9A482G21' => 'lonja', 'Lsat_1_v5_gn_1_28261' => 'lsa', 'Lsat_1_v5_gn_1_28281' => 'lsa', 'Lsat_1_v5_gn_1_32721' => 'lsa', 'Lsat_1_v5_gn_4_151760' => 'lsa', 'Lsat_1_v5_gn_4_2120' => 'lsa', 'Lsat_1_v5_gn_4_75761' => 'lsa', 'Lsat_1_v5_gn_5_10920' => 'lsa', 'Manes.02G099900' => 'mes', 'Manes.11G096200' => 'mes', 'Manes.12G007200' => 'mes', 'Manes.14G048300' => 'mes', 'Manes.17G114700' => 'mes', 'Mapoly0002s0070' => 'mpo', 'Mapoly0029s0099' => 'mpo', 'MBI07_g24742_MAGBIO' => 'mbi', 'MBI10_g27988_MAGBIO' => 'mbi', 'MBI11_g13057_MAGBIO' => 'mbi', 'MD02G1137200' => 'mdo', 'MD06G1137200' => 'mdo', 'MD07G1122300' => 'mdo', 'MD09G1078200' => 'mdo', 'MD13G1123700' => 'mdo', 'MD14G1151900' => 'mdo', 'MD17G1030900' => 'mdo', 'MD17G1068200' => 'mdo', 'MD17G1068600' => 'mdo', 'Medtr3g077540' => 'mtr', 'Medtr4g105530' => 'mtr', 'Medtr8g076580' => 'mtr', 'Medtr8g076590' => 'mtr', 'Medtr8g096410' => 'mtr', 'MELO3C016411.2' => 'cme', 'MELO3C017780.2' => 'cme', 'MELO3C022560.2' => 'cme', 'MELO3C026187.2' => 'cme', 'MELO3C026286.2' => 'cme', 'MELO3C032854.2' => 'cme', 'Migut.H02495' => 'egut', 'Migut.I00561' => 'egut', 'Migut.K01015' => 'egut', 'Migut.K01016' => 'egut', 'Migut.L00743' => 'egut', 'Migut.L00744' => 'egut', 'Migut.L00746' => 'egut', 'Migut.L00798' => 'egut', 'Migut.L00799' => 'egut', 'Migut.N02096' => 'egut', 'MSTRG.11259' => 'ama', 'MSTRG.23142' => 'ama', 'MSTRG.2499' => 'ama', 'Nitab4.5_0000003g0730' => 'nta', 'Nitab4.5_0000137g0020' => 'nta', 'Nitab4.5_0000721g0210' => 'nta', 'Nitab4.5_0000723g0050' => 'nta', 'Nitab4.5_0000913g0070' => 'nta', 'Nitab4.5_0001332g0040' => 'nta', 'Nitab4.5_0001771g0050' => 'nta', 'Nitab4.5_0001918g0050' => 'nta', 'Nitab4.5_0002686g0030' => 'nta', 'Nitab4.5_0003156g0020' => 'nta', 'Nitab4.5_0003383g0040' => 'nta', 'Nitab4.5_0003918g0010' => 'nta', 'Nitab4.5_0006760g0010' => 'nta', 'Nn1g05981' => 'nnu', 'Nn1g06288' => 'nnu', 'Nn3g16371' => 'nnu', 'Nn3g16786' => 'nnu', 'Nn4g22232' => 'nnu', 'Oeu005144.1' => 'oeu', 'Oeu005145.1' => 'oeu', 'Oeu011348.1' => 'oeu', 'Oeu016415.1' => 'oeu', 'Oeu023501.1' => 'oeu', 'Oeu044473.1' => 'oeu', 'Oeu048892.2' => 'oeu', 'Os01g0549200' => 'osa', 'Os02g0469300' => 'osa', 'Os04g0311100' => 'osa', 'Os06g0474900' => 'osa', 'Os10g0181700' => 'osa', 'Os11g0454800' => 'osa', 'Peaxi162Scf00037g00714' => 'pax', 'Peaxi162Scf00084g01217' => 'pax', 'Peaxi162Scf00257g00217' => 'pax', 'Peaxi162Scf00516g00215' => 'pax', 'Peaxi162Scf00689g00123' => 'pax', 'PGR044G2719' => 'pgr', 'PGR083G1360' => 'pgr', 'PGR102G2849' => 'pgr', 'PGR119G2534' => 'pgr', 'PGSC0003DMG400003538' => 'stu', 'PGSC0003DMG400028138' => 'stu', 'PGSC0003DMG400031732' => 'stu', 'PGSC0003DMG400038165' => 'stu', 'Phvul.002G284600' => 'pvu', 'Phvul.003G258200' => 'pvu', 'Phvul.009G176500' => 'pvu', 'Potri.003G167201' => 'ptr', 'Potri.005G118400' => 'ptr', 'Potri.012G089000' => 'ptr', 'Potri.012G102800' => 'ptr', 'Potri.015G079400' => 'ptr', 'Potri.015G100900' => 'ptr', 'Pp3c14_9810' => 'ppa', 'Pp3c15_10450' => 'ppa', 'Pp3c20_19150' => 'ppa', 'Pp3c23_12740' => 'ppa', 'Pp3c23_6310' => 'ppa', 'Pp3c24_3720' => 'ppa', 'Pp3c27_2580' => 'ppa', 'Pp3c9_8990' => 'ppa', 'PRCOL_00002854' => 'pco', 'Prupe.1G221200' => 'ppe', 'Prupe.3G289000' => 'ppe', 'Prupe.5G147000' => 'ppe', 'Prupe.6G157300' => 'ppe', 'Prupe.7G163400' => 'ppe', 'Psat0s2177g0040' => 'psa', 'Psat3g174760' => 'psa', 'Psat3g192160' => 'psa', 'Psat4g058520' => 'psa', 'Psat4g096840' => 'psa', 'Psat7g037320' => 'psa', 'PSO017G1274' => 'pso', 'PSO017G5166' => 'pso', 'PSO063G4558' => 'pso', 'PSO170G4458' => 'pso', 'PSO170G5005' => 'pso', 'PSO210G6156' => 'pso', 'PSO210G6635' => 'pso', 'PSO210G7397' => 'pso', 'PSO210G7700' => 'pso', 'PSO455G0035' => 'pso', 'PSO455G0180' => 'pso', 'PSO478G4515' => 'pso', 'PSO832G1305' => 'pso', 'PSO832G3489' => 'pso', 'QL02p075247' => 'qlo', 'QL03p051148' => 'qlo', 'QL05p010313' => 'qlo', 'QL06p034627' => 'qlo', 'QL10p001889' => 'qlo', 'QL10p010846' => 'qlo', 'RcHm_v2.0_Chr1g0350621' => 'rch', 'RcHm_v2.0_Chr1g0350641' => 'rch', 'RcHm_v2.0_Chr2g0092891' => 'rch', 'RcHm_v2.0_Chr2g0100251' => 'rch', 'RcHm_v2.0_Chr2g0158661' => 'rch', 'RcHm_v2.0_Chr2g0172741' => 'rch', 'RcHm_v2.0_Chr4g0429571' => 'rch', 'RcHm_v2.0_Chr5g0042471' => 'rch', 'RcHm_v2.0_Chr7g0189451' => 'rch', 'Rhsim08G0052000' => 'rsi', 'Rhsim08G0174400' => 'rsi', 'Rhsim08G0193200' => 'rsi', 'Rhsim10G0214800' => 'rsi', 'Rhsim10G0214900' => 'rsi', 'Rhsim10G0215000' => 'rsi', 'Rhsim12G0022900' => 'rsi', 'Rhsim12G0177500' => 'rsi', 'Rhsim12G0177700' => 'rsi', 'Sabra03G0122600' => 'sbr', 'Sabra05G0097400' => 'sbr', 'Sabra12G0064100' => 'sbr', 'Sabra15G0121300' => 'sbr', 'SalBow2G0642' => 'sbo', 'SalBow5G2667' => 'sbo', 'SalBow5G4873' => 'sbo', 'SalBow8G2395' => 'sbo', 'Sc03g0003290' => 'sci', 'Sc10g0010130' => 'sci', 'Sc22g0003650' => 'sci', 'Sed0001603' => 'sed', 'Sed0004259' => 'sed', 'Sed0006789' => 'sed', 'Sed0011838' => 'sed', 'Sed0012964' => 'sed', 'Sed0016383' => 'sed', 'Sed0019010' => 'sed', 'Sed0020188' => 'sed', 'SEGI_04702' => 'sgi', 'SEGI_17231' => 'sgi', 'SEGI_18877' => 'sgi', 'SEGI_25196' => 'sgi', 'SEGI_25515' => 'sgi', 'SEGI_28445' => 'sgi', 'SEGI_37452' => 'sgi', 'SGA_v2.0_scaffold188G40336' => 'sas', 'SGA_v2.0_scaffold228G43247' => 'sas', 'SGA_v2.0_scaffold280G46853' => 'sas', 'SGA_v2.0_scaffold34G13808' => 'sas', 'SGA_v2.0_scaffold40G15576' => 'sas', 'SGA_v2.0_scaffold611G53188' => 'sas', 'SGA_v2.0_scaffold78G25461' => 'sas', 'SGA_v2.0_scaffold90G27888' => 'sas', 'SHI08601' => 'shi', 'SHI08606' => 'shi', 'SHI17117' => 'shi', 'SHI17119' => 'shi', 'SMO118G0201' => 'smo', 'SMO169G0247' => 'smo', 'SMO176G0006' => 'smo', 'SMO176G0015' => 'smo', 'SMO202G0006' => 'smo', 'SMO240G0050' => 'smo', 'SMO286G0009' => 'smo', 'SMO338G0033' => 'smo', 'SMO356G0533' => 'smo', 'SMO364G0382' => 'smo', 'SMO367G0166' => 'smo', 'SMO367G1098' => 'smo', 'Solyc01g009920.3' => 'sly', 'Solyc01g099300.3' => 'sly', 'Solyc02g084700.3' => 'sly', 'Solyc03g097520.3' => 'sly', 'Solyc06g071580.3' => 'sly', 'Solyc10g081760.3' => 'sly', 'Sopen01g005480' => 'spe', 'Sopen01g042850' => 'spe', 'Sopen02g029370' => 'spe', 'Sopen03g028280' => 'spe', 'Sopen06g027870' => 'spe', 'Sopen10g032270' => 'spe', 'Sp5g18180' => 'spa', 'Sp6g12880' => 'spa', 'Sp6g30850' => 'spa', 'Sp7g22960' => 'spa', 'Sp7g34010' => 'spa', 'SpUn1326_0010' => 'spa', 'TAR371G0242' => 'tar', 'TAR622G0638' => 'tar', 'TAR628G1548' => 'tar', 'TAR629G1079' => 'tar', 'TAR629G3413' => 'tar', 'THA.LOC104804249' => 'tha', 'THA.LOC104808315' => 'tha', 'THA.LOC104809238' => 'tha', 'THA.LOC104825484' => 'tha', 'Thecc.01G025500' => 'tca', 'Thecc.03G015800' => 'tca', 'Thecc.03G018000' => 'tca', 'Thecc.03G134800' => 'tca', 'Thecc.04G014700' => 'tca', 'Thhalv10006991m.g' => 'esa', 'Thhalv10012707m.g' => 'esa', 'Thhalv10015739m.g' => 'esa', 'Thhalv10024553m.g' => 'esa', 'Thhalv10024673m.g' => 'esa', 'Thhalv10029187m.g' => 'esa', 'TPR.G12971' => 'tpr', 'TPR.G29396' => 'tpr', 'TPR.G33376' => 'tpr', 'TPR.G35508' => 'tpr', 'TPR.G35516' => 'tpr', 'TPR.G37317' => 'tpr', 'TPR.G37389' => 'tpr', 'TPR.G37523' => 'tpr', 'TPR.G559' => 'tpr', 'TWI14G0070' => 'twi', 'TWI14G0729' => 'twi', 'TWI18G0596' => 'twi', 'TWI39G0780' => 'twi', 'TWI39G0850' => 'twi', 'TWI73G1052' => 'twi', 'unitig_52.g17485' => 'ugi', 'unitig_61.g26355' => 'ugi', 'vmacro01040' => 'vma', 'vmacro16731' => 'vma', 'vmacro18270' => 'vma', 'vmacro19142' => 'vma', 'vmacro19407' => 'vma', 'vmacro19408' => 'vma', 'vmacro21899' => 'vma', 'vmacro21900' => 'vma', 'vmacro21901' => 'vma', 'VMungo0251G0490' => 'vmu', 'VMungo0251G1748' => 'vmu', 'VMungo1309G0421' => 'vmu', 'Zm00001eb086500' => 'zma', 'Zm00001eb150680' => 'zma', 'Zm00001eb162330' => 'zma', 'Zm00001eb203130' => 'zma', 'Zm00001eb369480' => 'zma', 'Zm00001eb382340' => 'zma', 'Zm00001eb416360' => 'zma' ), 'gf_id' => 'HOM05D000902', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000902' ), 'data_identifier' => 'HOM05D000902', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000902', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '663', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02470' => 'bna', 'A01p16260' => 'bna', 'A02p01680' => 'bna', 'A03p16600' => 'bna', 'A03p55660' => 'bna', 'A03p64160' => 'bna', 'A03p64170' => 'bna', 'A08p31900' => 'bna', 'A09p59530' => 'bna', 'A10p08230' => 'bna', 'A10p25090' => 'bna', 'Aa31LG3G7100' => 'aar', 'Aa31LG3G7110' => 'aar', 'Aa31LG6G13160' => 'aar', 'Aa31LG7G10770' => 'aar', 'Aa31LG7G3830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2723' => 'aag', 'Actinidia08045' => 'ach', 'Actinidia08888' => 'ach', 'Actinidia18333' => 'ach', 'Actinidia19334' => 'ach', 'Actinidia25552' => 'ach', 'Actinidia26089' => 'ach', 'Actinidia30615' => 'ach', 'Actinidia30616' => 'ach', 'Actinidia33083' => 'ach', 'Actinidia35762' => 'ach', 'Ah.02g110620' => 'amhyb', 'Ah.11g046390' => 'amhyb', 'AL1G31670' => 'aly', 'AL6G23730' => 'aly', 'AL7G14740' => 'aly', 'AL7G14750' => 'aly', 'AL7G14760' => 'aly', 'AL7G28220' => 'aly', 'AL8G24940' => 'aly', 'Aqoxy3G01665' => 'aox', 'Aqoxy3G02853' => 'aox', 'Aqoxy5G01513' => 'aox', 'Aqoxy5G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8SKA4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ75LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKDA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0LJZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7REX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZP4YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWX7I5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2QKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS0L9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPCD8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q161UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC7XCF' => 'arhy', 'AT1G19100' => 'ath', 'AT4G24970' => 'ath', 'AT4G36270' => 'ath', 'AT4G36280' => 'ath', 'AT4G36290' => 'ath', 'AT5G13130' => 'ath', 'AT5G50780' => 'ath', 'ATR0582G266' => 'atr', 'ATR0661G195' => 'atr', 'ATR1152G031' => 'atr', 'Atru.chr11.2382' => 'acertr', 'Atru.chr12.2337' => 'acertr', 'Atru.chr3.744' => 'acertr', 'Atru.chr6.1870' => 'acertr', 'Atru.chr9.2515' => 'acertr', 'AUR62004120' => 'cqu', 'AUR62005667' => 'cqu', 'AUR62007634' => 'cqu', 'AUR62008186' => 'cqu', 'AUR62008187' => 'cqu', 'AUR62008188' => 'cqu', 'AUR62027954' => 'cqu', 'AUR62028766' => 'cqu', 'AUR62028767' => 'cqu', 'AUR62028768' => 'cqu', 'AUR62028886' => 'cqu', 'AUR62029563' => 'cqu', 'AUR62038832' => 'cqu', 'BcaB01g04149' => 'bca', 'BcaB03g12940' => 'bca', 'BcaB03g13090' => 'bca', 'BcaB03g14466' => 'bca', 'BcaB05g24035' => 'bca', 'BcaC01g06050' => 'bca', 'BcaC04g19148' => 'bca', 'BcaC04g20761' => 'bca', 'BcaC06g32845' => 'bca', 'BcaC07g41274' => 'bca', 'BcaC09g50827' => 'bca', 'BcaNung00741' => 'bca', 'BcaNung00742' => 'bca', 'BcaNung01859' => 'bca', 'BcaNung03985' => 'bca', 'BcaNung03989' => 'bca', 'BcaNung05661' => 'bca', 'BolC1t00257H' => 'bol', 'BolC1t01956H' => 'bol', 'BolC2t06534H' => 'bol', 'BolC3t14334H' => 'bol', 'BolC5t30451H' => 'bol', 'BolC7t45880H' => 'bol', 'BolC7t46586H' => 'bol', 'BolC8t49301H' => 'bol', 'BolC8t51837H' => 'bol', 'BolC9t56822H' => 'bol', 'BolC9t59235H' => 'bol', 'BraA01t00234Z' => 'bra', 'BraA01t01563Z' => 'bra', 'BraA02t05147Z' => 'bra', 'BraA03t10947Z' => 'bra', 'BraA03t14633Z' => 'bra', 'BraA08t35112Z' => 'bra', 'BraA09t41330Z' => 'bra', 'BraA10t44570Z' => 'bra', 'C01p02670' => 'bna', 'C01p20260' => 'bna', 'C02p05890' => 'bna', 'C03p19530' => 'bna', 'C05p17470' => 'bna', 'C07p53900' => 'bna', 'C07p61630' => 'bna', 'C08p16800' => 'bna', 'C08p42810' => 'bna', 'C09p39480' => 'bna', 'C09p63980' => 'bna', 'CAN.G1001.7' => 'can', 'CAN.G1034.55' => 'can', 'CAN.G143.7' => 'can', 'CAN.G3340.1' => 'can', 'CAN.G358.19' => 'can', 'CAN.G373.2' => 'can', 'CAN.G674.16' => 'can', 'CAN.G674.17' => 'can', 'CAN.G674.18' => 'can', 'CAN.G732.2' => 'can', 'CAN.G732.3' => 'can', 'CAN.G993.39' => 'can', 'CANSAT01G2052' => 'cansat', 'CANSAT80G0070' => 'cansat', 'CANSAT80G0483' => 'cansat', 'CANSAT80G0625' => 'cansat', 'CARHR019690' => 'chi', 'CARHR080280' => 'chi', 'CARHR152750' => 'chi', 'CARHR152760' => 'chi', 'CARHR152770' => 'chi', 'CARHR200340' => 'chi', 'CARHR232370' => 'chi', 'CARHR244670' => 'chi', 'CARHR244680' => 'chi', 'CARHR257520' => 'chi', 'Carub.0001s1872' => 'cru', 'Carub.0006s1130' => 'cru', 'Carub.0007s0396' => 'cru', 'Carub.0007s0397' => 'cru', 'Carub.0007s1608' => 'cru', 'Carub.0008s1068' => 'cru', 'Carub.0008s1077' => 'cru', 'Ca_16158_v3' => 'car', 'Ca_17571_v3' => 'car', 'Ca_21936_v3' => 'car', 'Ca_22350_v3' => 'car', 'CBR_g22445' => 'cbr', 'CBR_g26290' => 'cbr', 'Cc04_g09610' => 'ccan', 'Cc04_g12280' => 'ccan', 'Cc07_g10230' => 'ccan', 'CDE02G0093' => 'cde', 'CDE02G0701' => 'cde', 'CDE04G1050' => 'cde', 'CDE05G1833' => 'cde', 'CDE05G3058' => 'cde', 'CDE05G3380' => 'cde', 'CDE06G0536' => 'cde', 'Cfa006923' => 'cfa', 'Cfa009402' => 'cfa', 'Cfa018751' => 'cfa', 'Cfa019164' => 'cfa', 'Cfa022935' => 'cfa', 'Ciclev10019081m.g' => 'ccl', 'Ciclev10025076m.g' => 'ccl', 'Ciclev10030712m.g' => 'ccl', 'Ciclev10033760m.g' => 'ccl', 'CiPaw.05G105600' => 'cil', 'CiPaw.08G136700' => 'cil', 'CiPaw.11G003900' => 'cil', 'CiPaw.11G023700' => 'cil', 'CiPaw.12G003700' => 'cil', 'ClCG06G017100' => 'cla', 'ClCG06G018110' => 'cla', 'ClCG07G008800' => 'cla', 'ClCG07G015330' => 'cla', 'COL.COLO4_13698' => 'col', 'COL.COLO4_16659' => 'col', 'COL.COLO4_21986' => 'col', 'COL.COLO4_24049' => 'col', 'COL.COLO4_29061' => 'col', 'COL.COLO4_29075' => 'col', 'COL.COLO4_30094' => 'col', 'Cpa.g.c33689' => 'cpa', 'Cpa.g.sc108.39' => 'cpa', 'Cpa.g.sc108.41' => 'cpa', 'Cpa.g.sc1163.1' => 'cpa', 'Cpa.g.sc4.155' => 'cpa', 'Cpa.g.sc6.194' => 'cpa', 'CsaV3_1G000340' => 'csa', 'CsaV3_1G001400' => 'csa', 'CsaV3_4G002220' => 'csa', 'CsaV3_4G005370' => 'csa', 'CSS0007487' => 'camsi', 'CSS0008066' => 'camsi', 'CSS0009120' => 'camsi', 'CSS0015512' => 'camsi', 'CSS0022409' => 'camsi', 'CSS0025358' => 'camsi', 'CSS0044547' => 'camsi', 'DCAR_013057' => 'dca', 'DCAR_015058' => 'dca', 'DCAR_016027' => 'dca', 'DCAR_017327' => 'dca', 'DCAR_020743' => 'dca', 'DCAR_026157' => 'dca', 'DCAR_032339' => 'dca', 'DCAR_032340' => 'dca', 'Dinv11200' => 'din', 'Dinv11201' => 'din', 'Dinv20631' => 'din', 'Dinv23182' => 'din', 'Dinv33466' => 'din', 'Dinv33583' => 'din', 'Dinv38565' => 'din', 'Duzib068G0200' => 'dzi', 'Duzib147G0132' => 'dzi', 'Duzib147G0635' => 'dzi', 'Duzib205G1670' => 'dzi', 'Duzib251G0606' => 'dzi', 'ECA232G3336' => 'eca', 'ECA232G3763' => 'eca', 'ECA232G4845' => 'eca', 'ECA234G1607' => 'eca', 'ECA246G0932' => 'eca', 'ECA247G0781' => 'eca', 'ECA247G1932' => 'eca', 'ECA247G2079' => 'eca', 'ECA247G3338' => 'eca', 'ECA247G4115' => 'eca', 'EL10Ac3g06552' => 'bvu', 'EL10Ac5g10721' => 'bvu', 'EL10Ac5g10722' => 'bvu', 'EL10Ac5g10723' => 'bvu', 'EL10Ac5g11361' => 'bvu', 'EL10Ac6g13553' => 'bvu', 'EL10As8g23872' => 'bvu', 'Eucgr.B00250' => 'egr', 'Eucgr.B00251' => 'egr', 'Eucgr.B03533' => 'egr', 'Eucgr.I02381' => 'egr', 'Eucgr.K02700' => 'egr', 'FAN02G0174' => 'fan', 'FAN02G3146' => 'fan', 'FAN04G1672' => 'fan', 'FAN04G2273' => 'fan', 'FAN05G2791' => 'fan', 'FAN05G4035' => 'fan', 'FAN07G0834' => 'fan', 'FAN08G1198' => 'fan', 'FAN09G4182' => 'fan', 'FAN12G0496' => 'fan', 'FAN13G1027' => 'fan', 'FAN13G2951' => 'fan', 'FAN14G0705' => 'fan', 'FAN14G0720' => 'fan', 'FAN17G0201' => 'fan', 'FAN17G2665' => 'fan', 'FAN18G1456' => 'fan', 'FAN18G1525' => 'fan', 'FAN18G3500' => 'fan', 'FAN28G2670' => 'fan', 'FvH4_1g12391' => 'fve', 'FvH4_4g23220' => 'fve', 'FvH4_5g08810' => 'fve', 'FvH4_5g28960' => 'fve', 'FvH4_6g42820' => 'fve', 'FvH4_6g51110' => 'fve', 'Glyma.02G051802' => 'gma', 'Glyma.04G185300' => 'gma', 'Glyma.05G202900' => 'gma', 'Glyma.08G010300' => 'gma', 'Glyma.16G131900' => 'gma', 'Glyma.17G087900' => 'gma', 'Gohir.A07G048600' => 'ghi', 'Gohir.A11G179000' => 'ghi', 'Gohir.A12G140900' => 'ghi', 'Gohir.A12G140950' => 'ghi', 'Gohir.A12G191700' => 'ghi', 'Gohir.A13G086300' => 'ghi', 'Gohir.D07G052900' => 'ghi', 'Gohir.D11G186600' => 'ghi', 'Gohir.D12G145575' => 'ghi', 'Gohir.D12G145650' => 'ghi', 'Gohir.D12G145725' => 'ghi', 'Gohir.D12G194050' => 'ghi', 'Gohir.D13G091800' => 'ghi', 'Gorai.001G055900' => 'gra', 'Gorai.007G198400' => 'gra', 'Gorai.008G157000' => 'gra', 'Gorai.008G157100' => 'gra', 'Gorai.008G208700' => 'gra', 'Gorai.010G138700' => 'gra', 'GSVIVG01000977001' => 'vvi', 'GSVIVG01007708001' => 'vvi', 'GSVIVG01008587001' => 'vvi', 'GSVIVG01018849001' => 'vvi', 'GSVIVG01032432001' => 'vvi', 'HanXRQChr02g0034131' => 'han', 'HanXRQChr02g0035981' => 'han', 'HanXRQChr02g0035991' => 'han', 'HanXRQChr05g0155611' => 'han', 'HanXRQChr05g0155621' => 'han', 'HanXRQChr08g0236501' => 'han', 'HanXRQChr09g0261321' => 'han', 'HanXRQChr09g0272081' => 'han', 'HanXRQChr10g0310741' => 'han', 'HanXRQChr11g0325591' => 'han', 'HanXRQChr12g0385691' => 'han', 'HanXRQChr13g0387801' => 'han', 'HanXRQChr15g0463011' => 'han', 'Haze_03826' => 'cav', 'Haze_03827' => 'cav', 'Haze_07183' => 'cav', 'Haze_07537' => 'cav', 'Haze_07539' => 'cav', 'Haze_12461' => 'cav', 'Haze_16115' => 'cav', 'Haze_16808' => 'cav', 'Haze_18531' => 'cav', 'Hma1.2p1_0046F.1_g026700' => 'hma', 'Hma1.2p1_0046F.1_g026710' => 'hma', 'Hma1.2p1_0168F.1_g074340' => 'hma', 'Hma1.2p1_0266F.1_g107030' => 'hma', 'Hma1.2p1_0266F.1_g107060' => 'hma', 'Hma1.2p1_0275F.1_g110510' => 'hma', 'Hma1.2p1_0592F.1_g185490' => 'hma', 'Hma1.2p1_0592F.1_g185500' => 'hma', 'Hma1.2p1_0592F.1_g185510' => 'hma', 'Hma1.2p1_0592F.1_g185520' => 'hma', 'Hma1.2p1_0592F.1_g185530' => 'hma', 'Hma1.2p1_0818F.1_g223450' => 'hma', 'HPP92_009708' => 'vpl', 'HPP92_009793' => 'vpl', 'HPP92_009796' => 'vpl', 'HPP92_009797' => 'vpl', 'HPP92_014940' => 'vpl', 'HPP92_014988' => 'vpl', 'Hund02463' => 'sun', 'Hund02760' => 'sun', 'Hund05071' => 'sun', 'Hund10108' => 'sun', 'Hund11204' => 'sun', 'Hund14016' => 'sun', 'Hund16464' => 'sun', 'Lalb_Chr09g0333391' => 'lal', 'Lalb_Chr11g0070461' => 'lal', 'Lalb_Chr12g0201671' => 'lal', 'Lalb_Chr13g0297161' => 'lal', 'Lj1g0002823' => 'lja', 'Lj3C1074T6' => 'lonja', 'Lj4A212T28' => 'lonja', 'Lj4g0005516' => 'lja', 'Lj4g0013705' => 'lja', 'Lj4g0027865' => 'lja', 'Lj5C92G16' => 'lonja', 'Lj5C92T12' => 'lonja', 'Lj7C596T3' => 'lonja', 'Lj9A446G59' => 'lonja', 'Lj9A482G21' => 'lonja', 'Lsat_1_v5_gn_1_28261' => 'lsa', 'Lsat_1_v5_gn_1_28281' => 'lsa', 'Lsat_1_v5_gn_1_32721' => 'lsa', 'Lsat_1_v5_gn_4_151760' => 'lsa', 'Lsat_1_v5_gn_4_2120' => 'lsa', 'Lsat_1_v5_gn_4_75761' => 'lsa', 'Lsat_1_v5_gn_5_10920' => 'lsa', 'Manes.02G099900' => 'mes', 'Manes.11G096200' => 'mes', 'Manes.12G007200' => 'mes', 'Manes.14G048300' => 'mes', 'Manes.17G114700' => 'mes', 'Mapoly0002s0070' => 'mpo', 'Mapoly0029s0099' => 'mpo', 'MBI07_g24742_MAGBIO' => 'mbi', 'MBI10_g27988_MAGBIO' => 'mbi', 'MBI11_g13057_MAGBIO' => 'mbi', 'MD02G1137200' => 'mdo', 'MD06G1137200' => 'mdo', 'MD07G1122300' => 'mdo', 'MD09G1078200' => 'mdo', 'MD13G1123700' => 'mdo', 'MD14G1151900' => 'mdo', 'MD17G1030900' => 'mdo', 'MD17G1068200' => 'mdo', 'MD17G1068600' => 'mdo', 'Medtr3g077540' => 'mtr', 'Medtr4g105530' => 'mtr', 'Medtr8g076580' => 'mtr', 'Medtr8g076590' => 'mtr', 'Medtr8g096410' => 'mtr', 'MELO3C016411.2' => 'cme', 'MELO3C017780.2' => 'cme', 'MELO3C022560.2' => 'cme', 'MELO3C026187.2' => 'cme', 'MELO3C026286.2' => 'cme', 'MELO3C032854.2' => 'cme', 'Migut.H02495' => 'egut', 'Migut.I00561' => 'egut', 'Migut.K01015' => 'egut', 'Migut.K01016' => 'egut', 'Migut.L00743' => 'egut', 'Migut.L00744' => 'egut', 'Migut.L00746' => 'egut', 'Migut.L00798' => 'egut', 'Migut.L00799' => 'egut', 'Migut.N02096' => 'egut', 'MSTRG.11259' => 'ama', 'MSTRG.23142' => 'ama', 'MSTRG.2499' => 'ama', 'Nitab4.5_0000003g0730' => 'nta', 'Nitab4.5_0000137g0020' => 'nta', 'Nitab4.5_0000721g0210' => 'nta', 'Nitab4.5_0000723g0050' => 'nta', 'Nitab4.5_0000913g0070' => 'nta', 'Nitab4.5_0001332g0040' => 'nta', 'Nitab4.5_0001771g0050' => 'nta', 'Nitab4.5_0001918g0050' => 'nta', 'Nitab4.5_0002686g0030' => 'nta', 'Nitab4.5_0003156g0020' => 'nta', 'Nitab4.5_0003383g0040' => 'nta', 'Nitab4.5_0003918g0010' => 'nta', 'Nitab4.5_0006760g0010' => 'nta', 'Nn1g05981' => 'nnu', 'Nn1g06288' => 'nnu', 'Nn3g16371' => 'nnu', 'Nn3g16786' => 'nnu', 'Nn4g22232' => 'nnu', 'Oeu005144.1' => 'oeu', 'Oeu005145.1' => 'oeu', 'Oeu011348.1' => 'oeu', 'Oeu016415.1' => 'oeu', 'Oeu023501.1' => 'oeu', 'Oeu044473.1' => 'oeu', 'Oeu048892.2' => 'oeu', 'Os01g0549200' => 'osa', 'Os02g0469300' => 'osa', 'Os04g0311100' => 'osa', 'Os06g0474900' => 'osa', 'Os10g0181700' => 'osa', 'Os11g0454800' => 'osa', 'Peaxi162Scf00037g00714' => 'pax', 'Peaxi162Scf00084g01217' => 'pax', 'Peaxi162Scf00257g00217' => 'pax', 'Peaxi162Scf00516g00215' => 'pax', 'Peaxi162Scf00689g00123' => 'pax', 'PGR044G2719' => 'pgr', 'PGR083G1360' => 'pgr', 'PGR102G2849' => 'pgr', 'PGR119G2534' => 'pgr', 'PGSC0003DMG400003538' => 'stu', 'PGSC0003DMG400028138' => 'stu', 'PGSC0003DMG400031732' => 'stu', 'PGSC0003DMG400038165' => 'stu', 'Phvul.002G284600' => 'pvu', 'Phvul.003G258200' => 'pvu', 'Phvul.009G176500' => 'pvu', 'Potri.003G167201' => 'ptr', 'Potri.005G118400' => 'ptr', 'Potri.012G089000' => 'ptr', 'Potri.012G102800' => 'ptr', 'Potri.015G079400' => 'ptr', 'Potri.015G100900' => 'ptr', 'Pp3c14_9810' => 'ppa', 'Pp3c15_10450' => 'ppa', 'Pp3c20_19150' => 'ppa', 'Pp3c23_12740' => 'ppa', 'Pp3c23_6310' => 'ppa', 'Pp3c24_3720' => 'ppa', 'Pp3c27_2580' => 'ppa', 'Pp3c9_8990' => 'ppa', 'PRCOL_00002854' => 'pco', 'Prupe.1G221200' => 'ppe', 'Prupe.3G289000' => 'ppe', 'Prupe.5G147000' => 'ppe', 'Prupe.6G157300' => 'ppe', 'Prupe.7G163400' => 'ppe', 'Psat0s2177g0040' => 'psa', 'Psat3g174760' => 'psa', 'Psat3g192160' => 'psa', 'Psat4g058520' => 'psa', 'Psat4g096840' => 'psa', 'Psat7g037320' => 'psa', 'PSO017G1274' => 'pso', 'PSO017G5166' => 'pso', 'PSO063G4558' => 'pso', 'PSO170G4458' => 'pso', 'PSO170G5005' => 'pso', 'PSO210G6156' => 'pso', 'PSO210G6635' => 'pso', 'PSO210G7397' => 'pso', 'PSO210G7700' => 'pso', 'PSO455G0035' => 'pso', 'PSO455G0180' => 'pso', 'PSO478G4515' => 'pso', 'PSO832G1305' => 'pso', 'PSO832G3489' => 'pso', 'QL02p075247' => 'qlo', 'QL03p051148' => 'qlo', 'QL05p010313' => 'qlo', 'QL06p034627' => 'qlo', 'QL10p001889' => 'qlo', 'QL10p010846' => 'qlo', 'RcHm_v2.0_Chr1g0350621' => 'rch', 'RcHm_v2.0_Chr1g0350641' => 'rch', 'RcHm_v2.0_Chr2g0092891' => 'rch', 'RcHm_v2.0_Chr2g0100251' => 'rch', 'RcHm_v2.0_Chr2g0158661' => 'rch', 'RcHm_v2.0_Chr2g0172741' => 'rch', 'RcHm_v2.0_Chr4g0429571' => 'rch', 'RcHm_v2.0_Chr5g0042471' => 'rch', 'RcHm_v2.0_Chr7g0189451' => 'rch', 'Rhsim08G0052000' => 'rsi', 'Rhsim08G0174400' => 'rsi', 'Rhsim08G0193200' => 'rsi', 'Rhsim10G0214800' => 'rsi', 'Rhsim10G0214900' => 'rsi', 'Rhsim10G0215000' => 'rsi', 'Rhsim12G0022900' => 'rsi', 'Rhsim12G0177500' => 'rsi', 'Rhsim12G0177700' => 'rsi', 'Sabra03G0122600' => 'sbr', 'Sabra05G0097400' => 'sbr', 'Sabra12G0064100' => 'sbr', 'Sabra15G0121300' => 'sbr', 'SalBow2G0642' => 'sbo', 'SalBow5G2667' => 'sbo', 'SalBow5G4873' => 'sbo', 'SalBow8G2395' => 'sbo', 'Sc03g0003290' => 'sci', 'Sc10g0010130' => 'sci', 'Sc22g0003650' => 'sci', 'Sed0001603' => 'sed', 'Sed0004259' => 'sed', 'Sed0006789' => 'sed', 'Sed0011838' => 'sed', 'Sed0012964' => 'sed', 'Sed0016383' => 'sed', 'Sed0019010' => 'sed', 'Sed0020188' => 'sed', 'SEGI_04702' => 'sgi', 'SEGI_17231' => 'sgi', 'SEGI_18877' => 'sgi', 'SEGI_25196' => 'sgi', 'SEGI_25515' => 'sgi', 'SEGI_28445' => 'sgi', 'SEGI_37452' => 'sgi', 'SGA_v2.0_scaffold188G40336' => 'sas', 'SGA_v2.0_scaffold228G43247' => 'sas', 'SGA_v2.0_scaffold280G46853' => 'sas', 'SGA_v2.0_scaffold34G13808' => 'sas', 'SGA_v2.0_scaffold40G15576' => 'sas', 'SGA_v2.0_scaffold611G53188' => 'sas', 'SGA_v2.0_scaffold78G25461' => 'sas', 'SGA_v2.0_scaffold90G27888' => 'sas', 'SHI08601' => 'shi', 'SHI08606' => 'shi', 'SHI17117' => 'shi', 'SHI17119' => 'shi', 'SMO118G0201' => 'smo', 'SMO169G0247' => 'smo', 'SMO176G0006' => 'smo', 'SMO176G0015' => 'smo', 'SMO202G0006' => 'smo', 'SMO240G0050' => 'smo', 'SMO286G0009' => 'smo', 'SMO338G0033' => 'smo', 'SMO356G0533' => 'smo', 'SMO364G0382' => 'smo', 'SMO367G0166' => 'smo', 'SMO367G1098' => 'smo', 'Solyc01g009920.3' => 'sly', 'Solyc01g099300.3' => 'sly', 'Solyc02g084700.3' => 'sly', 'Solyc03g097520.3' => 'sly', 'Solyc06g071580.3' => 'sly', 'Solyc10g081760.3' => 'sly', 'Sopen01g005480' => 'spe', 'Sopen01g042850' => 'spe', 'Sopen02g029370' => 'spe', 'Sopen03g028280' => 'spe', 'Sopen06g027870' => 'spe', 'Sopen10g032270' => 'spe', 'Sp5g18180' => 'spa', 'Sp6g12880' => 'spa', 'Sp6g30850' => 'spa', 'Sp7g22960' => 'spa', 'Sp7g34010' => 'spa', 'SpUn1326_0010' => 'spa', 'TAR371G0242' => 'tar', 'TAR622G0638' => 'tar', 'TAR628G1548' => 'tar', 'TAR629G1079' => 'tar', 'TAR629G3413' => 'tar', 'THA.LOC104804249' => 'tha', 'THA.LOC104808315' => 'tha', 'THA.LOC104809238' => 'tha', 'THA.LOC104825484' => 'tha', 'Thecc.01G025500' => 'tca', 'Thecc.03G015800' => 'tca', 'Thecc.03G018000' => 'tca', 'Thecc.03G134800' => 'tca', 'Thecc.04G014700' => 'tca', 'Thhalv10006991m.g' => 'esa', 'Thhalv10012707m.g' => 'esa', 'Thhalv10015739m.g' => 'esa', 'Thhalv10024553m.g' => 'esa', 'Thhalv10024673m.g' => 'esa', 'Thhalv10029187m.g' => 'esa', 'TPR.G12971' => 'tpr', 'TPR.G29396' => 'tpr', 'TPR.G33376' => 'tpr', 'TPR.G35508' => 'tpr', 'TPR.G35516' => 'tpr', 'TPR.G37317' => 'tpr', 'TPR.G37389' => 'tpr', 'TPR.G37523' => 'tpr', 'TPR.G559' => 'tpr', 'TWI14G0070' => 'twi', 'TWI14G0729' => 'twi', 'TWI18G0596' => 'twi', 'TWI39G0780' => 'twi', 'TWI39G0850' => 'twi', 'TWI73G1052' => 'twi', 'unitig_52.g17485' => 'ugi', 'unitig_61.g26355' => 'ugi', 'vmacro01040' => 'vma', 'vmacro16731' => 'vma', 'vmacro18270' => 'vma', 'vmacro19142' => 'vma', 'vmacro19407' => 'vma', 'vmacro19408' => 'vma', 'vmacro21899' => 'vma', 'vmacro21900' => 'vma', 'vmacro21901' => 'vma', 'VMungo0251G0490' => 'vmu', 'VMungo0251G1748' => 'vmu', 'VMungo1309G0421' => 'vmu', 'Zm00001eb086500' => 'zma', 'Zm00001eb150680' => 'zma', 'Zm00001eb162330' => 'zma', 'Zm00001eb203130' => 'zma', 'Zm00001eb369480' => 'zma', 'Zm00001eb382340' => 'zma', 'Zm00001eb416360' => 'zma' ) $gf_id = 'HOM05D000902' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000902' ) $data_identifier = 'HOM05D000902' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 13, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 10, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 6, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 9, 'hma' => (int) 12, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 4, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 6, 'ppa' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 6, 'rch' => (int) 9, 'rsi' => (int) 9, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 12, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 3, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416360' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000902', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '663', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02470' => 'bna', 'A01p16260' => 'bna', 'A02p01680' => 'bna', 'A03p16600' => 'bna', 'A03p55660' => 'bna', 'A03p64160' => 'bna', 'A03p64170' => 'bna', 'A08p31900' => 'bna', 'A09p59530' => 'bna', 'A10p08230' => 'bna', 'A10p25090' => 'bna', 'Aa31LG3G7100' => 'aar', 'Aa31LG3G7110' => 'aar', 'Aa31LG6G13160' => 'aar', 'Aa31LG7G10770' => 'aar', 'Aa31LG7G3830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2723' => 'aag', 'Actinidia08045' => 'ach', 'Actinidia08888' => 'ach', 'Actinidia18333' => 'ach', 'Actinidia19334' => 'ach', 'Actinidia25552' => 'ach', 'Actinidia26089' => 'ach', 'Actinidia30615' => 'ach', 'Actinidia30616' => 'ach', 'Actinidia33083' => 'ach', 'Actinidia35762' => 'ach', 'Ah.02g110620' => 'amhyb', 'Ah.11g046390' => 'amhyb', 'AL1G31670' => 'aly', 'AL6G23730' => 'aly', 'AL7G14740' => 'aly', 'AL7G14750' => 'aly', 'AL7G14760' => 'aly', 'AL7G28220' => 'aly', 'AL8G24940' => 'aly', 'Aqoxy3G01665' => 'aox', 'Aqoxy3G02853' => 'aox', 'Aqoxy5G01513' => 'aox', 'Aqoxy5G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8SKA4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ75LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKDA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0LJZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7REX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZP4YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWX7I5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2QKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS0L9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPCD8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q161UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC7XCF' => 'arhy', 'AT1G19100' => 'ath', 'AT4G24970' => 'ath', 'AT4G36270' => 'ath', 'AT4G36280' => 'ath', 'AT4G36290' => 'ath', 'AT5G13130' => 'ath', 'AT5G50780' => 'ath', 'ATR0582G266' => 'atr', 'ATR0661G195' => 'atr', 'ATR1152G031' => 'atr', 'Atru.chr11.2382' => 'acertr', 'Atru.chr12.2337' => 'acertr', 'Atru.chr3.744' => 'acertr', 'Atru.chr6.1870' => 'acertr', 'Atru.chr9.2515' => 'acertr', 'AUR62004120' => 'cqu', 'AUR62005667' => 'cqu', 'AUR62007634' => 'cqu', 'AUR62008186' => 'cqu', 'AUR62008187' => 'cqu', 'AUR62008188' => 'cqu', 'AUR62027954' => 'cqu', 'AUR62028766' => 'cqu', 'AUR62028767' => 'cqu', 'AUR62028768' => 'cqu', 'AUR62028886' => 'cqu', 'AUR62029563' => 'cqu', 'AUR62038832' => 'cqu', 'BcaB01g04149' => 'bca', 'BcaB03g12940' => 'bca', 'BcaB03g13090' => 'bca', 'BcaB03g14466' => 'bca', 'BcaB05g24035' => 'bca', 'BcaC01g06050' => 'bca', 'BcaC04g19148' => 'bca', 'BcaC04g20761' => 'bca', 'BcaC06g32845' => 'bca', 'BcaC07g41274' => 'bca', 'BcaC09g50827' => 'bca', 'BcaNung00741' => 'bca', 'BcaNung00742' => 'bca', 'BcaNung01859' => 'bca', 'BcaNung03985' => 'bca', 'BcaNung03989' => 'bca', 'BcaNung05661' => 'bca', 'BolC1t00257H' => 'bol', 'BolC1t01956H' => 'bol', 'BolC2t06534H' => 'bol', 'BolC3t14334H' => 'bol', 'BolC5t30451H' => 'bol', 'BolC7t45880H' => 'bol', 'BolC7t46586H' => 'bol', 'BolC8t49301H' => 'bol', 'BolC8t51837H' => 'bol', 'BolC9t56822H' => 'bol', 'BolC9t59235H' => 'bol', 'BraA01t00234Z' => 'bra', 'BraA01t01563Z' => 'bra', 'BraA02t05147Z' => 'bra', 'BraA03t10947Z' => 'bra', 'BraA03t14633Z' => 'bra', 'BraA08t35112Z' => 'bra', 'BraA09t41330Z' => 'bra', 'BraA10t44570Z' => 'bra', 'C01p02670' => 'bna', 'C01p20260' => 'bna', 'C02p05890' => 'bna', 'C03p19530' => 'bna', 'C05p17470' => 'bna', 'C07p53900' => 'bna', 'C07p61630' => 'bna', 'C08p16800' => 'bna', 'C08p42810' => 'bna', 'C09p39480' => 'bna', 'C09p63980' => 'bna', 'CAN.G1001.7' => 'can', 'CAN.G1034.55' => 'can', 'CAN.G143.7' => 'can', 'CAN.G3340.1' => 'can', 'CAN.G358.19' => 'can', 'CAN.G373.2' => 'can', 'CAN.G674.16' => 'can', 'CAN.G674.17' => 'can', 'CAN.G674.18' => 'can', 'CAN.G732.2' => 'can', 'CAN.G732.3' => 'can', 'CAN.G993.39' => 'can', 'CANSAT01G2052' => 'cansat', 'CANSAT80G0070' => 'cansat', 'CANSAT80G0483' => 'cansat', 'CANSAT80G0625' => 'cansat', 'CARHR019690' => 'chi', 'CARHR080280' => 'chi', 'CARHR152750' => 'chi', 'CARHR152760' => 'chi', 'CARHR152770' => 'chi', 'CARHR200340' => 'chi', 'CARHR232370' => 'chi', 'CARHR244670' => 'chi', 'CARHR244680' => 'chi', 'CARHR257520' => 'chi', 'Carub.0001s1872' => 'cru', 'Carub.0006s1130' => 'cru', 'Carub.0007s0396' => 'cru', 'Carub.0007s0397' => 'cru', 'Carub.0007s1608' => 'cru', 'Carub.0008s1068' => 'cru', 'Carub.0008s1077' => 'cru', 'Ca_16158_v3' => 'car', 'Ca_17571_v3' => 'car', 'Ca_21936_v3' => 'car', 'Ca_22350_v3' => 'car', 'CBR_g22445' => 'cbr', 'CBR_g26290' => 'cbr', 'Cc04_g09610' => 'ccan', 'Cc04_g12280' => 'ccan', 'Cc07_g10230' => 'ccan', 'CDE02G0093' => 'cde', 'CDE02G0701' => 'cde', 'CDE04G1050' => 'cde', 'CDE05G1833' => 'cde', 'CDE05G3058' => 'cde', 'CDE05G3380' => 'cde', 'CDE06G0536' => 'cde', 'Cfa006923' => 'cfa', 'Cfa009402' => 'cfa', 'Cfa018751' => 'cfa', 'Cfa019164' => 'cfa', 'Cfa022935' => 'cfa', 'Ciclev10019081m.g' => 'ccl', 'Ciclev10025076m.g' => 'ccl', 'Ciclev10030712m.g' => 'ccl', 'Ciclev10033760m.g' => 'ccl', 'CiPaw.05G105600' => 'cil', 'CiPaw.08G136700' => 'cil', 'CiPaw.11G003900' => 'cil', 'CiPaw.11G023700' => 'cil', 'CiPaw.12G003700' => 'cil', 'ClCG06G017100' => 'cla', 'ClCG06G018110' => 'cla', 'ClCG07G008800' => 'cla', 'ClCG07G015330' => 'cla', 'COL.COLO4_13698' => 'col', 'COL.COLO4_16659' => 'col', 'COL.COLO4_21986' => 'col', 'COL.COLO4_24049' => 'col', 'COL.COLO4_29061' => 'col', 'COL.COLO4_29075' => 'col', 'COL.COLO4_30094' => 'col', 'Cpa.g.c33689' => 'cpa', 'Cpa.g.sc108.39' => 'cpa', 'Cpa.g.sc108.41' => 'cpa', 'Cpa.g.sc1163.1' => 'cpa', 'Cpa.g.sc4.155' => 'cpa', 'Cpa.g.sc6.194' => 'cpa', 'CsaV3_1G000340' => 'csa', 'CsaV3_1G001400' => 'csa', 'CsaV3_4G002220' => 'csa', 'CsaV3_4G005370' => 'csa', 'CSS0007487' => 'camsi', 'CSS0008066' => 'camsi', 'CSS0009120' => 'camsi', 'CSS0015512' => 'camsi', 'CSS0022409' => 'camsi', 'CSS0025358' => 'camsi', 'CSS0044547' => 'camsi', 'DCAR_013057' => 'dca', 'DCAR_015058' => 'dca', 'DCAR_016027' => 'dca', 'DCAR_017327' => 'dca', 'DCAR_020743' => 'dca', 'DCAR_026157' => 'dca', 'DCAR_032339' => 'dca', 'DCAR_032340' => 'dca', 'Dinv11200' => 'din', 'Dinv11201' => 'din', 'Dinv20631' => 'din', 'Dinv23182' => 'din', 'Dinv33466' => 'din', 'Dinv33583' => 'din', 'Dinv38565' => 'din', 'Duzib068G0200' => 'dzi', 'Duzib147G0132' => 'dzi', 'Duzib147G0635' => 'dzi', 'Duzib205G1670' => 'dzi', 'Duzib251G0606' => 'dzi', 'ECA232G3336' => 'eca', 'ECA232G3763' => 'eca', 'ECA232G4845' => 'eca', 'ECA234G1607' => 'eca', 'ECA246G0932' => 'eca', 'ECA247G0781' => 'eca', 'ECA247G1932' => 'eca', 'ECA247G2079' => 'eca', 'ECA247G3338' => 'eca', 'ECA247G4115' => 'eca', 'EL10Ac3g06552' => 'bvu', 'EL10Ac5g10721' => 'bvu', 'EL10Ac5g10722' => 'bvu', 'EL10Ac5g10723' => 'bvu', 'EL10Ac5g11361' => 'bvu', 'EL10Ac6g13553' => 'bvu', 'EL10As8g23872' => 'bvu', 'Eucgr.B00250' => 'egr', 'Eucgr.B00251' => 'egr', 'Eucgr.B03533' => 'egr', 'Eucgr.I02381' => 'egr', 'Eucgr.K02700' => 'egr', 'FAN02G0174' => 'fan', 'FAN02G3146' => 'fan', 'FAN04G1672' => 'fan', 'FAN04G2273' => 'fan', 'FAN05G2791' => 'fan', 'FAN05G4035' => 'fan', 'FAN07G0834' => 'fan', 'FAN08G1198' => 'fan', 'FAN09G4182' => 'fan', 'FAN12G0496' => 'fan', 'FAN13G1027' => 'fan', 'FAN13G2951' => 'fan', 'FAN14G0705' => 'fan', 'FAN14G0720' => 'fan', 'FAN17G0201' => 'fan', 'FAN17G2665' => 'fan', 'FAN18G1456' => 'fan', 'FAN18G1525' => 'fan', 'FAN18G3500' => 'fan', 'FAN28G2670' => 'fan', 'FvH4_1g12391' => 'fve', 'FvH4_4g23220' => 'fve', 'FvH4_5g08810' => 'fve', 'FvH4_5g28960' => 'fve', 'FvH4_6g42820' => 'fve', 'FvH4_6g51110' => 'fve', 'Glyma.02G051802' => 'gma', 'Glyma.04G185300' => 'gma', 'Glyma.05G202900' => 'gma', 'Glyma.08G010300' => 'gma', 'Glyma.16G131900' => 'gma', 'Glyma.17G087900' => 'gma', 'Gohir.A07G048600' => 'ghi', 'Gohir.A11G179000' => 'ghi', 'Gohir.A12G140900' => 'ghi', 'Gohir.A12G140950' => 'ghi', 'Gohir.A12G191700' => 'ghi', 'Gohir.A13G086300' => 'ghi', 'Gohir.D07G052900' => 'ghi', 'Gohir.D11G186600' => 'ghi', 'Gohir.D12G145575' => 'ghi', 'Gohir.D12G145650' => 'ghi', 'Gohir.D12G145725' => 'ghi', 'Gohir.D12G194050' => 'ghi', 'Gohir.D13G091800' => 'ghi', 'Gorai.001G055900' => 'gra', 'Gorai.007G198400' => 'gra', 'Gorai.008G157000' => 'gra', 'Gorai.008G157100' => 'gra', 'Gorai.008G208700' => 'gra', 'Gorai.010G138700' => 'gra', 'GSVIVG01000977001' => 'vvi', 'GSVIVG01007708001' => 'vvi', 'GSVIVG01008587001' => 'vvi', 'GSVIVG01018849001' => 'vvi', 'GSVIVG01032432001' => 'vvi', 'HanXRQChr02g0034131' => 'han', 'HanXRQChr02g0035981' => 'han', 'HanXRQChr02g0035991' => 'han', 'HanXRQChr05g0155611' => 'han', 'HanXRQChr05g0155621' => 'han', 'HanXRQChr08g0236501' => 'han', 'HanXRQChr09g0261321' => 'han', 'HanXRQChr09g0272081' => 'han', 'HanXRQChr10g0310741' => 'han', 'HanXRQChr11g0325591' => 'han', 'HanXRQChr12g0385691' => 'han', 'HanXRQChr13g0387801' => 'han', 'HanXRQChr15g0463011' => 'han', 'Haze_03826' => 'cav', 'Haze_03827' => 'cav', 'Haze_07183' => 'cav', 'Haze_07537' => 'cav', 'Haze_07539' => 'cav', 'Haze_12461' => 'cav', 'Haze_16115' => 'cav', 'Haze_16808' => 'cav', 'Haze_18531' => 'cav', 'Hma1.2p1_0046F.1_g026700' => 'hma', 'Hma1.2p1_0046F.1_g026710' => 'hma', 'Hma1.2p1_0168F.1_g074340' => 'hma', 'Hma1.2p1_0266F.1_g107030' => 'hma', 'Hma1.2p1_0266F.1_g107060' => 'hma', 'Hma1.2p1_0275F.1_g110510' => 'hma', 'Hma1.2p1_0592F.1_g185490' => 'hma', 'Hma1.2p1_0592F.1_g185500' => 'hma', 'Hma1.2p1_0592F.1_g185510' => 'hma', 'Hma1.2p1_0592F.1_g185520' => 'hma', 'Hma1.2p1_0592F.1_g185530' => 'hma', 'Hma1.2p1_0818F.1_g223450' => 'hma', 'HPP92_009708' => 'vpl', 'HPP92_009793' => 'vpl', 'HPP92_009796' => 'vpl', 'HPP92_009797' => 'vpl', 'HPP92_014940' => 'vpl', 'HPP92_014988' => 'vpl', 'Hund02463' => 'sun', 'Hund02760' => 'sun', 'Hund05071' => 'sun', 'Hund10108' => 'sun', 'Hund11204' => 'sun', 'Hund14016' => 'sun', 'Hund16464' => 'sun', 'Lalb_Chr09g0333391' => 'lal', 'Lalb_Chr11g0070461' => 'lal', 'Lalb_Chr12g0201671' => 'lal', 'Lalb_Chr13g0297161' => 'lal', 'Lj1g0002823' => 'lja', 'Lj3C1074T6' => 'lonja', 'Lj4A212T28' => 'lonja', 'Lj4g0005516' => 'lja', 'Lj4g0013705' => 'lja', 'Lj4g0027865' => 'lja', 'Lj5C92G16' => 'lonja', 'Lj5C92T12' => 'lonja', 'Lj7C596T3' => 'lonja', 'Lj9A446G59' => 'lonja', 'Lj9A482G21' => 'lonja', 'Lsat_1_v5_gn_1_28261' => 'lsa', 'Lsat_1_v5_gn_1_28281' => 'lsa', 'Lsat_1_v5_gn_1_32721' => 'lsa', 'Lsat_1_v5_gn_4_151760' => 'lsa', 'Lsat_1_v5_gn_4_2120' => 'lsa', 'Lsat_1_v5_gn_4_75761' => 'lsa', 'Lsat_1_v5_gn_5_10920' => 'lsa', 'Manes.02G099900' => 'mes', 'Manes.11G096200' => 'mes', 'Manes.12G007200' => 'mes', 'Manes.14G048300' => 'mes', 'Manes.17G114700' => 'mes', 'Mapoly0002s0070' => 'mpo', 'Mapoly0029s0099' => 'mpo', 'MBI07_g24742_MAGBIO' => 'mbi', 'MBI10_g27988_MAGBIO' => 'mbi', 'MBI11_g13057_MAGBIO' => 'mbi', 'MD02G1137200' => 'mdo', 'MD06G1137200' => 'mdo', 'MD07G1122300' => 'mdo', 'MD09G1078200' => 'mdo', 'MD13G1123700' => 'mdo', 'MD14G1151900' => 'mdo', 'MD17G1030900' => 'mdo', 'MD17G1068200' => 'mdo', 'MD17G1068600' => 'mdo', 'Medtr3g077540' => 'mtr', 'Medtr4g105530' => 'mtr', 'Medtr8g076580' => 'mtr', 'Medtr8g076590' => 'mtr', 'Medtr8g096410' => 'mtr', 'MELO3C016411.2' => 'cme', 'MELO3C017780.2' => 'cme', 'MELO3C022560.2' => 'cme', 'MELO3C026187.2' => 'cme', 'MELO3C026286.2' => 'cme', 'MELO3C032854.2' => 'cme', 'Migut.H02495' => 'egut', 'Migut.I00561' => 'egut', 'Migut.K01015' => 'egut', 'Migut.K01016' => 'egut', 'Migut.L00743' => 'egut', 'Migut.L00744' => 'egut', 'Migut.L00746' => 'egut', 'Migut.L00798' => 'egut', 'Migut.L00799' => 'egut', 'Migut.N02096' => 'egut', 'MSTRG.11259' => 'ama', 'MSTRG.23142' => 'ama', 'MSTRG.2499' => 'ama', 'Nitab4.5_0000003g0730' => 'nta', 'Nitab4.5_0000137g0020' => 'nta', 'Nitab4.5_0000721g0210' => 'nta', 'Nitab4.5_0000723g0050' => 'nta', 'Nitab4.5_0000913g0070' => 'nta', 'Nitab4.5_0001332g0040' => 'nta', 'Nitab4.5_0001771g0050' => 'nta', 'Nitab4.5_0001918g0050' => 'nta', 'Nitab4.5_0002686g0030' => 'nta', 'Nitab4.5_0003156g0020' => 'nta', 'Nitab4.5_0003383g0040' => 'nta', 'Nitab4.5_0003918g0010' => 'nta', 'Nitab4.5_0006760g0010' => 'nta', 'Nn1g05981' => 'nnu', 'Nn1g06288' => 'nnu', 'Nn3g16371' => 'nnu', 'Nn3g16786' => 'nnu', 'Nn4g22232' => 'nnu', 'Oeu005144.1' => 'oeu', 'Oeu005145.1' => 'oeu', 'Oeu011348.1' => 'oeu', 'Oeu016415.1' => 'oeu', 'Oeu023501.1' => 'oeu', 'Oeu044473.1' => 'oeu', 'Oeu048892.2' => 'oeu', 'Os01g0549200' => 'osa', 'Os02g0469300' => 'osa', 'Os04g0311100' => 'osa', 'Os06g0474900' => 'osa', 'Os10g0181700' => 'osa', 'Os11g0454800' => 'osa', 'Peaxi162Scf00037g00714' => 'pax', 'Peaxi162Scf00084g01217' => 'pax', 'Peaxi162Scf00257g00217' => 'pax', 'Peaxi162Scf00516g00215' => 'pax', 'Peaxi162Scf00689g00123' => 'pax', 'PGR044G2719' => 'pgr', 'PGR083G1360' => 'pgr', 'PGR102G2849' => 'pgr', 'PGR119G2534' => 'pgr', 'PGSC0003DMG400003538' => 'stu', 'PGSC0003DMG400028138' => 'stu', 'PGSC0003DMG400031732' => 'stu', 'PGSC0003DMG400038165' => 'stu', 'Phvul.002G284600' => 'pvu', 'Phvul.003G258200' => 'pvu', 'Phvul.009G176500' => 'pvu', 'Potri.003G167201' => 'ptr', 'Potri.005G118400' => 'ptr', 'Potri.012G089000' => 'ptr', 'Potri.012G102800' => 'ptr', 'Potri.015G079400' => 'ptr', 'Potri.015G100900' => 'ptr', 'Pp3c14_9810' => 'ppa', 'Pp3c15_10450' => 'ppa', 'Pp3c20_19150' => 'ppa', 'Pp3c23_12740' => 'ppa', 'Pp3c23_6310' => 'ppa', 'Pp3c24_3720' => 'ppa', 'Pp3c27_2580' => 'ppa', 'Pp3c9_8990' => 'ppa', 'PRCOL_00002854' => 'pco', 'Prupe.1G221200' => 'ppe', 'Prupe.3G289000' => 'ppe', 'Prupe.5G147000' => 'ppe', 'Prupe.6G157300' => 'ppe', 'Prupe.7G163400' => 'ppe', 'Psat0s2177g0040' => 'psa', 'Psat3g174760' => 'psa', 'Psat3g192160' => 'psa', 'Psat4g058520' => 'psa', 'Psat4g096840' => 'psa', 'Psat7g037320' => 'psa', 'PSO017G1274' => 'pso', 'PSO017G5166' => 'pso', 'PSO063G4558' => 'pso', 'PSO170G4458' => 'pso', 'PSO170G5005' => 'pso', 'PSO210G6156' => 'pso', 'PSO210G6635' => 'pso', 'PSO210G7397' => 'pso', 'PSO210G7700' => 'pso', 'PSO455G0035' => 'pso', 'PSO455G0180' => 'pso', 'PSO478G4515' => 'pso', 'PSO832G1305' => 'pso', 'PSO832G3489' => 'pso', 'QL02p075247' => 'qlo', 'QL03p051148' => 'qlo', 'QL05p010313' => 'qlo', 'QL06p034627' => 'qlo', 'QL10p001889' => 'qlo', 'QL10p010846' => 'qlo', 'RcHm_v2.0_Chr1g0350621' => 'rch', 'RcHm_v2.0_Chr1g0350641' => 'rch', 'RcHm_v2.0_Chr2g0092891' => 'rch', 'RcHm_v2.0_Chr2g0100251' => 'rch', 'RcHm_v2.0_Chr2g0158661' => 'rch', 'RcHm_v2.0_Chr2g0172741' => 'rch', 'RcHm_v2.0_Chr4g0429571' => 'rch', 'RcHm_v2.0_Chr5g0042471' => 'rch', 'RcHm_v2.0_Chr7g0189451' => 'rch', 'Rhsim08G0052000' => 'rsi', 'Rhsim08G0174400' => 'rsi', 'Rhsim08G0193200' => 'rsi', 'Rhsim10G0214800' => 'rsi', 'Rhsim10G0214900' => 'rsi', 'Rhsim10G0215000' => 'rsi', 'Rhsim12G0022900' => 'rsi', 'Rhsim12G0177500' => 'rsi', 'Rhsim12G0177700' => 'rsi', 'Sabra03G0122600' => 'sbr', 'Sabra05G0097400' => 'sbr', 'Sabra12G0064100' => 'sbr', 'Sabra15G0121300' => 'sbr', 'SalBow2G0642' => 'sbo', 'SalBow5G2667' => 'sbo', 'SalBow5G4873' => 'sbo', 'SalBow8G2395' => 'sbo', 'Sc03g0003290' => 'sci', 'Sc10g0010130' => 'sci', 'Sc22g0003650' => 'sci', 'Sed0001603' => 'sed', 'Sed0004259' => 'sed', 'Sed0006789' => 'sed', 'Sed0011838' => 'sed', 'Sed0012964' => 'sed', 'Sed0016383' => 'sed', 'Sed0019010' => 'sed', 'Sed0020188' => 'sed', 'SEGI_04702' => 'sgi', 'SEGI_17231' => 'sgi', 'SEGI_18877' => 'sgi', 'SEGI_25196' => 'sgi', 'SEGI_25515' => 'sgi', 'SEGI_28445' => 'sgi', 'SEGI_37452' => 'sgi', 'SGA_v2.0_scaffold188G40336' => 'sas', 'SGA_v2.0_scaffold228G43247' => 'sas', 'SGA_v2.0_scaffold280G46853' => 'sas', 'SGA_v2.0_scaffold34G13808' => 'sas', 'SGA_v2.0_scaffold40G15576' => 'sas', 'SGA_v2.0_scaffold611G53188' => 'sas', 'SGA_v2.0_scaffold78G25461' => 'sas', 'SGA_v2.0_scaffold90G27888' => 'sas', 'SHI08601' => 'shi', 'SHI08606' => 'shi', 'SHI17117' => 'shi', 'SHI17119' => 'shi', 'SMO118G0201' => 'smo', 'SMO169G0247' => 'smo', 'SMO176G0006' => 'smo', 'SMO176G0015' => 'smo', 'SMO202G0006' => 'smo', 'SMO240G0050' => 'smo', 'SMO286G0009' => 'smo', 'SMO338G0033' => 'smo', 'SMO356G0533' => 'smo', 'SMO364G0382' => 'smo', 'SMO367G0166' => 'smo', 'SMO367G1098' => 'smo', 'Solyc01g009920.3' => 'sly', 'Solyc01g099300.3' => 'sly', 'Solyc02g084700.3' => 'sly', 'Solyc03g097520.3' => 'sly', 'Solyc06g071580.3' => 'sly', 'Solyc10g081760.3' => 'sly', 'Sopen01g005480' => 'spe', 'Sopen01g042850' => 'spe', 'Sopen02g029370' => 'spe', 'Sopen03g028280' => 'spe', 'Sopen06g027870' => 'spe', 'Sopen10g032270' => 'spe', 'Sp5g18180' => 'spa', 'Sp6g12880' => 'spa', 'Sp6g30850' => 'spa', 'Sp7g22960' => 'spa', 'Sp7g34010' => 'spa', 'SpUn1326_0010' => 'spa', 'TAR371G0242' => 'tar', 'TAR622G0638' => 'tar', 'TAR628G1548' => 'tar', 'TAR629G1079' => 'tar', 'TAR629G3413' => 'tar', 'THA.LOC104804249' => 'tha', 'THA.LOC104808315' => 'tha', 'THA.LOC104809238' => 'tha', 'THA.LOC104825484' => 'tha', 'Thecc.01G025500' => 'tca', 'Thecc.03G015800' => 'tca', 'Thecc.03G018000' => 'tca', 'Thecc.03G134800' => 'tca', 'Thecc.04G014700' => 'tca', 'Thhalv10006991m.g' => 'esa', 'Thhalv10012707m.g' => 'esa', 'Thhalv10015739m.g' => 'esa', 'Thhalv10024553m.g' => 'esa', 'Thhalv10024673m.g' => 'esa', 'Thhalv10029187m.g' => 'esa', 'TPR.G12971' => 'tpr', 'TPR.G29396' => 'tpr', 'TPR.G33376' => 'tpr', 'TPR.G35508' => 'tpr', 'TPR.G35516' => 'tpr', 'TPR.G37317' => 'tpr', 'TPR.G37389' => 'tpr', 'TPR.G37523' => 'tpr', 'TPR.G559' => 'tpr', 'TWI14G0070' => 'twi', 'TWI14G0729' => 'twi', 'TWI18G0596' => 'twi', 'TWI39G0780' => 'twi', 'TWI39G0850' => 'twi', 'TWI73G1052' => 'twi', 'unitig_52.g17485' => 'ugi', 'unitig_61.g26355' => 'ugi', 'vmacro01040' => 'vma', 'vmacro16731' => 'vma', 'vmacro18270' => 'vma', 'vmacro19142' => 'vma', 'vmacro19407' => 'vma', 'vmacro19408' => 'vma', 'vmacro21899' => 'vma', 'vmacro21900' => 'vma', 'vmacro21901' => 'vma', 'VMungo0251G0490' => 'vmu', 'VMungo0251G1748' => 'vmu', 'VMungo1309G0421' => 'vmu', 'Zm00001eb086500' => 'zma', 'Zm00001eb150680' => 'zma', 'Zm00001eb162330' => 'zma', 'Zm00001eb203130' => 'zma', 'Zm00001eb369480' => 'zma', 'Zm00001eb382340' => 'zma', 'Zm00001eb416360' => 'zma' ), 'gf_id' => 'HOM05D000902', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000902' ), 'data_identifier' => 'HOM05D000902', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000902', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '663', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02470' => 'bna', 'A01p16260' => 'bna', 'A02p01680' => 'bna', 'A03p16600' => 'bna', 'A03p55660' => 'bna', 'A03p64160' => 'bna', 'A03p64170' => 'bna', 'A08p31900' => 'bna', 'A09p59530' => 'bna', 'A10p08230' => 'bna', 'A10p25090' => 'bna', 'Aa31LG3G7100' => 'aar', 'Aa31LG3G7110' => 'aar', 'Aa31LG6G13160' => 'aar', 'Aa31LG7G10770' => 'aar', 'Aa31LG7G3830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2723' => 'aag', 'Actinidia08045' => 'ach', 'Actinidia08888' => 'ach', 'Actinidia18333' => 'ach', 'Actinidia19334' => 'ach', 'Actinidia25552' => 'ach', 'Actinidia26089' => 'ach', 'Actinidia30615' => 'ach', 'Actinidia30616' => 'ach', 'Actinidia33083' => 'ach', 'Actinidia35762' => 'ach', 'Ah.02g110620' => 'amhyb', 'Ah.11g046390' => 'amhyb', 'AL1G31670' => 'aly', 'AL6G23730' => 'aly', 'AL7G14740' => 'aly', 'AL7G14750' => 'aly', 'AL7G14760' => 'aly', 'AL7G28220' => 'aly', 'AL8G24940' => 'aly', 'Aqoxy3G01665' => 'aox', 'Aqoxy3G02853' => 'aox', 'Aqoxy5G01513' => 'aox', 'Aqoxy5G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8SKA4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ75LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKDA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0LJZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7REX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZP4YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWX7I5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2QKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS0L9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPCD8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q161UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC7XCF' => 'arhy', 'AT1G19100' => 'ath', 'AT4G24970' => 'ath', 'AT4G36270' => 'ath', 'AT4G36280' => 'ath', 'AT4G36290' => 'ath', 'AT5G13130' => 'ath', 'AT5G50780' => 'ath', 'ATR0582G266' => 'atr', 'ATR0661G195' => 'atr', 'ATR1152G031' => 'atr', 'Atru.chr11.2382' => 'acertr', 'Atru.chr12.2337' => 'acertr', 'Atru.chr3.744' => 'acertr', 'Atru.chr6.1870' => 'acertr', 'Atru.chr9.2515' => 'acertr', 'AUR62004120' => 'cqu', 'AUR62005667' => 'cqu', 'AUR62007634' => 'cqu', 'AUR62008186' => 'cqu', 'AUR62008187' => 'cqu', 'AUR62008188' => 'cqu', 'AUR62027954' => 'cqu', 'AUR62028766' => 'cqu', 'AUR62028767' => 'cqu', 'AUR62028768' => 'cqu', 'AUR62028886' => 'cqu', 'AUR62029563' => 'cqu', 'AUR62038832' => 'cqu', 'BcaB01g04149' => 'bca', 'BcaB03g12940' => 'bca', 'BcaB03g13090' => 'bca', 'BcaB03g14466' => 'bca', 'BcaB05g24035' => 'bca', 'BcaC01g06050' => 'bca', 'BcaC04g19148' => 'bca', 'BcaC04g20761' => 'bca', 'BcaC06g32845' => 'bca', 'BcaC07g41274' => 'bca', 'BcaC09g50827' => 'bca', 'BcaNung00741' => 'bca', 'BcaNung00742' => 'bca', 'BcaNung01859' => 'bca', 'BcaNung03985' => 'bca', 'BcaNung03989' => 'bca', 'BcaNung05661' => 'bca', 'BolC1t00257H' => 'bol', 'BolC1t01956H' => 'bol', 'BolC2t06534H' => 'bol', 'BolC3t14334H' => 'bol', 'BolC5t30451H' => 'bol', 'BolC7t45880H' => 'bol', 'BolC7t46586H' => 'bol', 'BolC8t49301H' => 'bol', 'BolC8t51837H' => 'bol', 'BolC9t56822H' => 'bol', 'BolC9t59235H' => 'bol', 'BraA01t00234Z' => 'bra', 'BraA01t01563Z' => 'bra', 'BraA02t05147Z' => 'bra', 'BraA03t10947Z' => 'bra', 'BraA03t14633Z' => 'bra', 'BraA08t35112Z' => 'bra', 'BraA09t41330Z' => 'bra', 'BraA10t44570Z' => 'bra', 'C01p02670' => 'bna', 'C01p20260' => 'bna', 'C02p05890' => 'bna', 'C03p19530' => 'bna', 'C05p17470' => 'bna', 'C07p53900' => 'bna', 'C07p61630' => 'bna', 'C08p16800' => 'bna', 'C08p42810' => 'bna', 'C09p39480' => 'bna', 'C09p63980' => 'bna', 'CAN.G1001.7' => 'can', 'CAN.G1034.55' => 'can', 'CAN.G143.7' => 'can', 'CAN.G3340.1' => 'can', 'CAN.G358.19' => 'can', 'CAN.G373.2' => 'can', 'CAN.G674.16' => 'can', 'CAN.G674.17' => 'can', 'CAN.G674.18' => 'can', 'CAN.G732.2' => 'can', 'CAN.G732.3' => 'can', 'CAN.G993.39' => 'can', 'CANSAT01G2052' => 'cansat', 'CANSAT80G0070' => 'cansat', 'CANSAT80G0483' => 'cansat', 'CANSAT80G0625' => 'cansat', 'CARHR019690' => 'chi', 'CARHR080280' => 'chi', 'CARHR152750' => 'chi', 'CARHR152760' => 'chi', 'CARHR152770' => 'chi', 'CARHR200340' => 'chi', 'CARHR232370' => 'chi', 'CARHR244670' => 'chi', 'CARHR244680' => 'chi', 'CARHR257520' => 'chi', 'Carub.0001s1872' => 'cru', 'Carub.0006s1130' => 'cru', 'Carub.0007s0396' => 'cru', 'Carub.0007s0397' => 'cru', 'Carub.0007s1608' => 'cru', 'Carub.0008s1068' => 'cru', 'Carub.0008s1077' => 'cru', 'Ca_16158_v3' => 'car', 'Ca_17571_v3' => 'car', 'Ca_21936_v3' => 'car', 'Ca_22350_v3' => 'car', 'CBR_g22445' => 'cbr', 'CBR_g26290' => 'cbr', 'Cc04_g09610' => 'ccan', 'Cc04_g12280' => 'ccan', 'Cc07_g10230' => 'ccan', 'CDE02G0093' => 'cde', 'CDE02G0701' => 'cde', 'CDE04G1050' => 'cde', 'CDE05G1833' => 'cde', 'CDE05G3058' => 'cde', 'CDE05G3380' => 'cde', 'CDE06G0536' => 'cde', 'Cfa006923' => 'cfa', 'Cfa009402' => 'cfa', 'Cfa018751' => 'cfa', 'Cfa019164' => 'cfa', 'Cfa022935' => 'cfa', 'Ciclev10019081m.g' => 'ccl', 'Ciclev10025076m.g' => 'ccl', 'Ciclev10030712m.g' => 'ccl', 'Ciclev10033760m.g' => 'ccl', 'CiPaw.05G105600' => 'cil', 'CiPaw.08G136700' => 'cil', 'CiPaw.11G003900' => 'cil', 'CiPaw.11G023700' => 'cil', 'CiPaw.12G003700' => 'cil', 'ClCG06G017100' => 'cla', 'ClCG06G018110' => 'cla', 'ClCG07G008800' => 'cla', 'ClCG07G015330' => 'cla', 'COL.COLO4_13698' => 'col', 'COL.COLO4_16659' => 'col', 'COL.COLO4_21986' => 'col', 'COL.COLO4_24049' => 'col', 'COL.COLO4_29061' => 'col', 'COL.COLO4_29075' => 'col', 'COL.COLO4_30094' => 'col', 'Cpa.g.c33689' => 'cpa', 'Cpa.g.sc108.39' => 'cpa', 'Cpa.g.sc108.41' => 'cpa', 'Cpa.g.sc1163.1' => 'cpa', 'Cpa.g.sc4.155' => 'cpa', 'Cpa.g.sc6.194' => 'cpa', 'CsaV3_1G000340' => 'csa', 'CsaV3_1G001400' => 'csa', 'CsaV3_4G002220' => 'csa', 'CsaV3_4G005370' => 'csa', 'CSS0007487' => 'camsi', 'CSS0008066' => 'camsi', 'CSS0009120' => 'camsi', 'CSS0015512' => 'camsi', 'CSS0022409' => 'camsi', 'CSS0025358' => 'camsi', 'CSS0044547' => 'camsi', 'DCAR_013057' => 'dca', 'DCAR_015058' => 'dca', 'DCAR_016027' => 'dca', 'DCAR_017327' => 'dca', 'DCAR_020743' => 'dca', 'DCAR_026157' => 'dca', 'DCAR_032339' => 'dca', 'DCAR_032340' => 'dca', 'Dinv11200' => 'din', 'Dinv11201' => 'din', 'Dinv20631' => 'din', 'Dinv23182' => 'din', 'Dinv33466' => 'din', 'Dinv33583' => 'din', 'Dinv38565' => 'din', 'Duzib068G0200' => 'dzi', 'Duzib147G0132' => 'dzi', 'Duzib147G0635' => 'dzi', 'Duzib205G1670' => 'dzi', 'Duzib251G0606' => 'dzi', 'ECA232G3336' => 'eca', 'ECA232G3763' => 'eca', 'ECA232G4845' => 'eca', 'ECA234G1607' => 'eca', 'ECA246G0932' => 'eca', 'ECA247G0781' => 'eca', 'ECA247G1932' => 'eca', 'ECA247G2079' => 'eca', 'ECA247G3338' => 'eca', 'ECA247G4115' => 'eca', 'EL10Ac3g06552' => 'bvu', 'EL10Ac5g10721' => 'bvu', 'EL10Ac5g10722' => 'bvu', 'EL10Ac5g10723' => 'bvu', 'EL10Ac5g11361' => 'bvu', 'EL10Ac6g13553' => 'bvu', 'EL10As8g23872' => 'bvu', 'Eucgr.B00250' => 'egr', 'Eucgr.B00251' => 'egr', 'Eucgr.B03533' => 'egr', 'Eucgr.I02381' => 'egr', 'Eucgr.K02700' => 'egr', 'FAN02G0174' => 'fan', 'FAN02G3146' => 'fan', 'FAN04G1672' => 'fan', 'FAN04G2273' => 'fan', 'FAN05G2791' => 'fan', 'FAN05G4035' => 'fan', 'FAN07G0834' => 'fan', 'FAN08G1198' => 'fan', 'FAN09G4182' => 'fan', 'FAN12G0496' => 'fan', 'FAN13G1027' => 'fan', 'FAN13G2951' => 'fan', 'FAN14G0705' => 'fan', 'FAN14G0720' => 'fan', 'FAN17G0201' => 'fan', 'FAN17G2665' => 'fan', 'FAN18G1456' => 'fan', 'FAN18G1525' => 'fan', 'FAN18G3500' => 'fan', 'FAN28G2670' => 'fan', 'FvH4_1g12391' => 'fve', 'FvH4_4g23220' => 'fve', 'FvH4_5g08810' => 'fve', 'FvH4_5g28960' => 'fve', 'FvH4_6g42820' => 'fve', 'FvH4_6g51110' => 'fve', 'Glyma.02G051802' => 'gma', 'Glyma.04G185300' => 'gma', 'Glyma.05G202900' => 'gma', 'Glyma.08G010300' => 'gma', 'Glyma.16G131900' => 'gma', 'Glyma.17G087900' => 'gma', 'Gohir.A07G048600' => 'ghi', 'Gohir.A11G179000' => 'ghi', 'Gohir.A12G140900' => 'ghi', 'Gohir.A12G140950' => 'ghi', 'Gohir.A12G191700' => 'ghi', 'Gohir.A13G086300' => 'ghi', 'Gohir.D07G052900' => 'ghi', 'Gohir.D11G186600' => 'ghi', 'Gohir.D12G145575' => 'ghi', 'Gohir.D12G145650' => 'ghi', 'Gohir.D12G145725' => 'ghi', 'Gohir.D12G194050' => 'ghi', 'Gohir.D13G091800' => 'ghi', 'Gorai.001G055900' => 'gra', 'Gorai.007G198400' => 'gra', 'Gorai.008G157000' => 'gra', 'Gorai.008G157100' => 'gra', 'Gorai.008G208700' => 'gra', 'Gorai.010G138700' => 'gra', 'GSVIVG01000977001' => 'vvi', 'GSVIVG01007708001' => 'vvi', 'GSVIVG01008587001' => 'vvi', 'GSVIVG01018849001' => 'vvi', 'GSVIVG01032432001' => 'vvi', 'HanXRQChr02g0034131' => 'han', 'HanXRQChr02g0035981' => 'han', 'HanXRQChr02g0035991' => 'han', 'HanXRQChr05g0155611' => 'han', 'HanXRQChr05g0155621' => 'han', 'HanXRQChr08g0236501' => 'han', 'HanXRQChr09g0261321' => 'han', 'HanXRQChr09g0272081' => 'han', 'HanXRQChr10g0310741' => 'han', 'HanXRQChr11g0325591' => 'han', 'HanXRQChr12g0385691' => 'han', 'HanXRQChr13g0387801' => 'han', 'HanXRQChr15g0463011' => 'han', 'Haze_03826' => 'cav', 'Haze_03827' => 'cav', 'Haze_07183' => 'cav', 'Haze_07537' => 'cav', 'Haze_07539' => 'cav', 'Haze_12461' => 'cav', 'Haze_16115' => 'cav', 'Haze_16808' => 'cav', 'Haze_18531' => 'cav', 'Hma1.2p1_0046F.1_g026700' => 'hma', 'Hma1.2p1_0046F.1_g026710' => 'hma', 'Hma1.2p1_0168F.1_g074340' => 'hma', 'Hma1.2p1_0266F.1_g107030' => 'hma', 'Hma1.2p1_0266F.1_g107060' => 'hma', 'Hma1.2p1_0275F.1_g110510' => 'hma', 'Hma1.2p1_0592F.1_g185490' => 'hma', 'Hma1.2p1_0592F.1_g185500' => 'hma', 'Hma1.2p1_0592F.1_g185510' => 'hma', 'Hma1.2p1_0592F.1_g185520' => 'hma', 'Hma1.2p1_0592F.1_g185530' => 'hma', 'Hma1.2p1_0818F.1_g223450' => 'hma', 'HPP92_009708' => 'vpl', 'HPP92_009793' => 'vpl', 'HPP92_009796' => 'vpl', 'HPP92_009797' => 'vpl', 'HPP92_014940' => 'vpl', 'HPP92_014988' => 'vpl', 'Hund02463' => 'sun', 'Hund02760' => 'sun', 'Hund05071' => 'sun', 'Hund10108' => 'sun', 'Hund11204' => 'sun', 'Hund14016' => 'sun', 'Hund16464' => 'sun', 'Lalb_Chr09g0333391' => 'lal', 'Lalb_Chr11g0070461' => 'lal', 'Lalb_Chr12g0201671' => 'lal', 'Lalb_Chr13g0297161' => 'lal', 'Lj1g0002823' => 'lja', 'Lj3C1074T6' => 'lonja', 'Lj4A212T28' => 'lonja', 'Lj4g0005516' => 'lja', 'Lj4g0013705' => 'lja', 'Lj4g0027865' => 'lja', 'Lj5C92G16' => 'lonja', 'Lj5C92T12' => 'lonja', 'Lj7C596T3' => 'lonja', 'Lj9A446G59' => 'lonja', 'Lj9A482G21' => 'lonja', 'Lsat_1_v5_gn_1_28261' => 'lsa', 'Lsat_1_v5_gn_1_28281' => 'lsa', 'Lsat_1_v5_gn_1_32721' => 'lsa', 'Lsat_1_v5_gn_4_151760' => 'lsa', 'Lsat_1_v5_gn_4_2120' => 'lsa', 'Lsat_1_v5_gn_4_75761' => 'lsa', 'Lsat_1_v5_gn_5_10920' => 'lsa', 'Manes.02G099900' => 'mes', 'Manes.11G096200' => 'mes', 'Manes.12G007200' => 'mes', 'Manes.14G048300' => 'mes', 'Manes.17G114700' => 'mes', 'Mapoly0002s0070' => 'mpo', 'Mapoly0029s0099' => 'mpo', 'MBI07_g24742_MAGBIO' => 'mbi', 'MBI10_g27988_MAGBIO' => 'mbi', 'MBI11_g13057_MAGBIO' => 'mbi', 'MD02G1137200' => 'mdo', 'MD06G1137200' => 'mdo', 'MD07G1122300' => 'mdo', 'MD09G1078200' => 'mdo', 'MD13G1123700' => 'mdo', 'MD14G1151900' => 'mdo', 'MD17G1030900' => 'mdo', 'MD17G1068200' => 'mdo', 'MD17G1068600' => 'mdo', 'Medtr3g077540' => 'mtr', 'Medtr4g105530' => 'mtr', 'Medtr8g076580' => 'mtr', 'Medtr8g076590' => 'mtr', 'Medtr8g096410' => 'mtr', 'MELO3C016411.2' => 'cme', 'MELO3C017780.2' => 'cme', 'MELO3C022560.2' => 'cme', 'MELO3C026187.2' => 'cme', 'MELO3C026286.2' => 'cme', 'MELO3C032854.2' => 'cme', 'Migut.H02495' => 'egut', 'Migut.I00561' => 'egut', 'Migut.K01015' => 'egut', 'Migut.K01016' => 'egut', 'Migut.L00743' => 'egut', 'Migut.L00744' => 'egut', 'Migut.L00746' => 'egut', 'Migut.L00798' => 'egut', 'Migut.L00799' => 'egut', 'Migut.N02096' => 'egut', 'MSTRG.11259' => 'ama', 'MSTRG.23142' => 'ama', 'MSTRG.2499' => 'ama', 'Nitab4.5_0000003g0730' => 'nta', 'Nitab4.5_0000137g0020' => 'nta', 'Nitab4.5_0000721g0210' => 'nta', 'Nitab4.5_0000723g0050' => 'nta', 'Nitab4.5_0000913g0070' => 'nta', 'Nitab4.5_0001332g0040' => 'nta', 'Nitab4.5_0001771g0050' => 'nta', 'Nitab4.5_0001918g0050' => 'nta', 'Nitab4.5_0002686g0030' => 'nta', 'Nitab4.5_0003156g0020' => 'nta', 'Nitab4.5_0003383g0040' => 'nta', 'Nitab4.5_0003918g0010' => 'nta', 'Nitab4.5_0006760g0010' => 'nta', 'Nn1g05981' => 'nnu', 'Nn1g06288' => 'nnu', 'Nn3g16371' => 'nnu', 'Nn3g16786' => 'nnu', 'Nn4g22232' => 'nnu', 'Oeu005144.1' => 'oeu', 'Oeu005145.1' => 'oeu', 'Oeu011348.1' => 'oeu', 'Oeu016415.1' => 'oeu', 'Oeu023501.1' => 'oeu', 'Oeu044473.1' => 'oeu', 'Oeu048892.2' => 'oeu', 'Os01g0549200' => 'osa', 'Os02g0469300' => 'osa', 'Os04g0311100' => 'osa', 'Os06g0474900' => 'osa', 'Os10g0181700' => 'osa', 'Os11g0454800' => 'osa', 'Peaxi162Scf00037g00714' => 'pax', 'Peaxi162Scf00084g01217' => 'pax', 'Peaxi162Scf00257g00217' => 'pax', 'Peaxi162Scf00516g00215' => 'pax', 'Peaxi162Scf00689g00123' => 'pax', 'PGR044G2719' => 'pgr', 'PGR083G1360' => 'pgr', 'PGR102G2849' => 'pgr', 'PGR119G2534' => 'pgr', 'PGSC0003DMG400003538' => 'stu', 'PGSC0003DMG400028138' => 'stu', 'PGSC0003DMG400031732' => 'stu', 'PGSC0003DMG400038165' => 'stu', 'Phvul.002G284600' => 'pvu', 'Phvul.003G258200' => 'pvu', 'Phvul.009G176500' => 'pvu', 'Potri.003G167201' => 'ptr', 'Potri.005G118400' => 'ptr', 'Potri.012G089000' => 'ptr', 'Potri.012G102800' => 'ptr', 'Potri.015G079400' => 'ptr', 'Potri.015G100900' => 'ptr', 'Pp3c14_9810' => 'ppa', 'Pp3c15_10450' => 'ppa', 'Pp3c20_19150' => 'ppa', 'Pp3c23_12740' => 'ppa', 'Pp3c23_6310' => 'ppa', 'Pp3c24_3720' => 'ppa', 'Pp3c27_2580' => 'ppa', 'Pp3c9_8990' => 'ppa', 'PRCOL_00002854' => 'pco', 'Prupe.1G221200' => 'ppe', 'Prupe.3G289000' => 'ppe', 'Prupe.5G147000' => 'ppe', 'Prupe.6G157300' => 'ppe', 'Prupe.7G163400' => 'ppe', 'Psat0s2177g0040' => 'psa', 'Psat3g174760' => 'psa', 'Psat3g192160' => 'psa', 'Psat4g058520' => 'psa', 'Psat4g096840' => 'psa', 'Psat7g037320' => 'psa', 'PSO017G1274' => 'pso', 'PSO017G5166' => 'pso', 'PSO063G4558' => 'pso', 'PSO170G4458' => 'pso', 'PSO170G5005' => 'pso', 'PSO210G6156' => 'pso', 'PSO210G6635' => 'pso', 'PSO210G7397' => 'pso', 'PSO210G7700' => 'pso', 'PSO455G0035' => 'pso', 'PSO455G0180' => 'pso', 'PSO478G4515' => 'pso', 'PSO832G1305' => 'pso', 'PSO832G3489' => 'pso', 'QL02p075247' => 'qlo', 'QL03p051148' => 'qlo', 'QL05p010313' => 'qlo', 'QL06p034627' => 'qlo', 'QL10p001889' => 'qlo', 'QL10p010846' => 'qlo', 'RcHm_v2.0_Chr1g0350621' => 'rch', 'RcHm_v2.0_Chr1g0350641' => 'rch', 'RcHm_v2.0_Chr2g0092891' => 'rch', 'RcHm_v2.0_Chr2g0100251' => 'rch', 'RcHm_v2.0_Chr2g0158661' => 'rch', 'RcHm_v2.0_Chr2g0172741' => 'rch', 'RcHm_v2.0_Chr4g0429571' => 'rch', 'RcHm_v2.0_Chr5g0042471' => 'rch', 'RcHm_v2.0_Chr7g0189451' => 'rch', 'Rhsim08G0052000' => 'rsi', 'Rhsim08G0174400' => 'rsi', 'Rhsim08G0193200' => 'rsi', 'Rhsim10G0214800' => 'rsi', 'Rhsim10G0214900' => 'rsi', 'Rhsim10G0215000' => 'rsi', 'Rhsim12G0022900' => 'rsi', 'Rhsim12G0177500' => 'rsi', 'Rhsim12G0177700' => 'rsi', 'Sabra03G0122600' => 'sbr', 'Sabra05G0097400' => 'sbr', 'Sabra12G0064100' => 'sbr', 'Sabra15G0121300' => 'sbr', 'SalBow2G0642' => 'sbo', 'SalBow5G2667' => 'sbo', 'SalBow5G4873' => 'sbo', 'SalBow8G2395' => 'sbo', 'Sc03g0003290' => 'sci', 'Sc10g0010130' => 'sci', 'Sc22g0003650' => 'sci', 'Sed0001603' => 'sed', 'Sed0004259' => 'sed', 'Sed0006789' => 'sed', 'Sed0011838' => 'sed', 'Sed0012964' => 'sed', 'Sed0016383' => 'sed', 'Sed0019010' => 'sed', 'Sed0020188' => 'sed', 'SEGI_04702' => 'sgi', 'SEGI_17231' => 'sgi', 'SEGI_18877' => 'sgi', 'SEGI_25196' => 'sgi', 'SEGI_25515' => 'sgi', 'SEGI_28445' => 'sgi', 'SEGI_37452' => 'sgi', 'SGA_v2.0_scaffold188G40336' => 'sas', 'SGA_v2.0_scaffold228G43247' => 'sas', 'SGA_v2.0_scaffold280G46853' => 'sas', 'SGA_v2.0_scaffold34G13808' => 'sas', 'SGA_v2.0_scaffold40G15576' => 'sas', 'SGA_v2.0_scaffold611G53188' => 'sas', 'SGA_v2.0_scaffold78G25461' => 'sas', 'SGA_v2.0_scaffold90G27888' => 'sas', 'SHI08601' => 'shi', 'SHI08606' => 'shi', 'SHI17117' => 'shi', 'SHI17119' => 'shi', 'SMO118G0201' => 'smo', 'SMO169G0247' => 'smo', 'SMO176G0006' => 'smo', 'SMO176G0015' => 'smo', 'SMO202G0006' => 'smo', 'SMO240G0050' => 'smo', 'SMO286G0009' => 'smo', 'SMO338G0033' => 'smo', 'SMO356G0533' => 'smo', 'SMO364G0382' => 'smo', 'SMO367G0166' => 'smo', 'SMO367G1098' => 'smo', 'Solyc01g009920.3' => 'sly', 'Solyc01g099300.3' => 'sly', 'Solyc02g084700.3' => 'sly', 'Solyc03g097520.3' => 'sly', 'Solyc06g071580.3' => 'sly', 'Solyc10g081760.3' => 'sly', 'Sopen01g005480' => 'spe', 'Sopen01g042850' => 'spe', 'Sopen02g029370' => 'spe', 'Sopen03g028280' => 'spe', 'Sopen06g027870' => 'spe', 'Sopen10g032270' => 'spe', 'Sp5g18180' => 'spa', 'Sp6g12880' => 'spa', 'Sp6g30850' => 'spa', 'Sp7g22960' => 'spa', 'Sp7g34010' => 'spa', 'SpUn1326_0010' => 'spa', 'TAR371G0242' => 'tar', 'TAR622G0638' => 'tar', 'TAR628G1548' => 'tar', 'TAR629G1079' => 'tar', 'TAR629G3413' => 'tar', 'THA.LOC104804249' => 'tha', 'THA.LOC104808315' => 'tha', 'THA.LOC104809238' => 'tha', 'THA.LOC104825484' => 'tha', 'Thecc.01G025500' => 'tca', 'Thecc.03G015800' => 'tca', 'Thecc.03G018000' => 'tca', 'Thecc.03G134800' => 'tca', 'Thecc.04G014700' => 'tca', 'Thhalv10006991m.g' => 'esa', 'Thhalv10012707m.g' => 'esa', 'Thhalv10015739m.g' => 'esa', 'Thhalv10024553m.g' => 'esa', 'Thhalv10024673m.g' => 'esa', 'Thhalv10029187m.g' => 'esa', 'TPR.G12971' => 'tpr', 'TPR.G29396' => 'tpr', 'TPR.G33376' => 'tpr', 'TPR.G35508' => 'tpr', 'TPR.G35516' => 'tpr', 'TPR.G37317' => 'tpr', 'TPR.G37389' => 'tpr', 'TPR.G37523' => 'tpr', 'TPR.G559' => 'tpr', 'TWI14G0070' => 'twi', 'TWI14G0729' => 'twi', 'TWI18G0596' => 'twi', 'TWI39G0780' => 'twi', 'TWI39G0850' => 'twi', 'TWI73G1052' => 'twi', 'unitig_52.g17485' => 'ugi', 'unitig_61.g26355' => 'ugi', 'vmacro01040' => 'vma', 'vmacro16731' => 'vma', 'vmacro18270' => 'vma', 'vmacro19142' => 'vma', 'vmacro19407' => 'vma', 'vmacro19408' => 'vma', 'vmacro21899' => 'vma', 'vmacro21900' => 'vma', 'vmacro21901' => 'vma', 'VMungo0251G0490' => 'vmu', 'VMungo0251G1748' => 'vmu', 'VMungo1309G0421' => 'vmu', 'Zm00001eb086500' => 'zma', 'Zm00001eb150680' => 'zma', 'Zm00001eb162330' => 'zma', 'Zm00001eb203130' => 'zma', 'Zm00001eb369480' => 'zma', 'Zm00001eb382340' => 'zma', 'Zm00001eb416360' => 'zma' ) $gf_id = 'HOM05D000902' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000902' ) $data_identifier = 'HOM05D000902' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 13, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 10, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 6, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 9, 'hma' => (int) 12, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 4, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 6, 'ppa' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 6, 'rch' => (int) 9, 'rsi' => (int) 9, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 12, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 3, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416360' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000902', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '663', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02470' => 'bna', 'A01p16260' => 'bna', 'A02p01680' => 'bna', 'A03p16600' => 'bna', 'A03p55660' => 'bna', 'A03p64160' => 'bna', 'A03p64170' => 'bna', 'A08p31900' => 'bna', 'A09p59530' => 'bna', 'A10p08230' => 'bna', 'A10p25090' => 'bna', 'Aa31LG3G7100' => 'aar', 'Aa31LG3G7110' => 'aar', 'Aa31LG6G13160' => 'aar', 'Aa31LG7G10770' => 'aar', 'Aa31LG7G3830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2723' => 'aag', 'Actinidia08045' => 'ach', 'Actinidia08888' => 'ach', 'Actinidia18333' => 'ach', 'Actinidia19334' => 'ach', 'Actinidia25552' => 'ach', 'Actinidia26089' => 'ach', 'Actinidia30615' => 'ach', 'Actinidia30616' => 'ach', 'Actinidia33083' => 'ach', 'Actinidia35762' => 'ach', 'Ah.02g110620' => 'amhyb', 'Ah.11g046390' => 'amhyb', 'AL1G31670' => 'aly', 'AL6G23730' => 'aly', 'AL7G14740' => 'aly', 'AL7G14750' => 'aly', 'AL7G14760' => 'aly', 'AL7G28220' => 'aly', 'AL8G24940' => 'aly', 'Aqoxy3G01665' => 'aox', 'Aqoxy3G02853' => 'aox', 'Aqoxy5G01513' => 'aox', 'Aqoxy5G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8SKA4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ75LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKDA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0LJZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7REX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZP4YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWX7I5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2QKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS0L9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPCD8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q161UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC7XCF' => 'arhy', 'AT1G19100' => 'ath', 'AT4G24970' => 'ath', 'AT4G36270' => 'ath', 'AT4G36280' => 'ath', 'AT4G36290' => 'ath', 'AT5G13130' => 'ath', 'AT5G50780' => 'ath', 'ATR0582G266' => 'atr', 'ATR0661G195' => 'atr', 'ATR1152G031' => 'atr', 'Atru.chr11.2382' => 'acertr', 'Atru.chr12.2337' => 'acertr', 'Atru.chr3.744' => 'acertr', 'Atru.chr6.1870' => 'acertr', 'Atru.chr9.2515' => 'acertr', 'AUR62004120' => 'cqu', 'AUR62005667' => 'cqu', 'AUR62007634' => 'cqu', 'AUR62008186' => 'cqu', 'AUR62008187' => 'cqu', 'AUR62008188' => 'cqu', 'AUR62027954' => 'cqu', 'AUR62028766' => 'cqu', 'AUR62028767' => 'cqu', 'AUR62028768' => 'cqu', 'AUR62028886' => 'cqu', 'AUR62029563' => 'cqu', 'AUR62038832' => 'cqu', 'BcaB01g04149' => 'bca', 'BcaB03g12940' => 'bca', 'BcaB03g13090' => 'bca', 'BcaB03g14466' => 'bca', 'BcaB05g24035' => 'bca', 'BcaC01g06050' => 'bca', 'BcaC04g19148' => 'bca', 'BcaC04g20761' => 'bca', 'BcaC06g32845' => 'bca', 'BcaC07g41274' => 'bca', 'BcaC09g50827' => 'bca', 'BcaNung00741' => 'bca', 'BcaNung00742' => 'bca', 'BcaNung01859' => 'bca', 'BcaNung03985' => 'bca', 'BcaNung03989' => 'bca', 'BcaNung05661' => 'bca', 'BolC1t00257H' => 'bol', 'BolC1t01956H' => 'bol', 'BolC2t06534H' => 'bol', 'BolC3t14334H' => 'bol', 'BolC5t30451H' => 'bol', 'BolC7t45880H' => 'bol', 'BolC7t46586H' => 'bol', 'BolC8t49301H' => 'bol', 'BolC8t51837H' => 'bol', 'BolC9t56822H' => 'bol', 'BolC9t59235H' => 'bol', 'BraA01t00234Z' => 'bra', 'BraA01t01563Z' => 'bra', 'BraA02t05147Z' => 'bra', 'BraA03t10947Z' => 'bra', 'BraA03t14633Z' => 'bra', 'BraA08t35112Z' => 'bra', 'BraA09t41330Z' => 'bra', 'BraA10t44570Z' => 'bra', 'C01p02670' => 'bna', 'C01p20260' => 'bna', 'C02p05890' => 'bna', 'C03p19530' => 'bna', 'C05p17470' => 'bna', 'C07p53900' => 'bna', 'C07p61630' => 'bna', 'C08p16800' => 'bna', 'C08p42810' => 'bna', 'C09p39480' => 'bna', 'C09p63980' => 'bna', 'CAN.G1001.7' => 'can', 'CAN.G1034.55' => 'can', 'CAN.G143.7' => 'can', 'CAN.G3340.1' => 'can', 'CAN.G358.19' => 'can', 'CAN.G373.2' => 'can', 'CAN.G674.16' => 'can', 'CAN.G674.17' => 'can', 'CAN.G674.18' => 'can', 'CAN.G732.2' => 'can', 'CAN.G732.3' => 'can', 'CAN.G993.39' => 'can', 'CANSAT01G2052' => 'cansat', 'CANSAT80G0070' => 'cansat', 'CANSAT80G0483' => 'cansat', 'CANSAT80G0625' => 'cansat', 'CARHR019690' => 'chi', 'CARHR080280' => 'chi', 'CARHR152750' => 'chi', 'CARHR152760' => 'chi', 'CARHR152770' => 'chi', 'CARHR200340' => 'chi', 'CARHR232370' => 'chi', 'CARHR244670' => 'chi', 'CARHR244680' => 'chi', 'CARHR257520' => 'chi', 'Carub.0001s1872' => 'cru', 'Carub.0006s1130' => 'cru', 'Carub.0007s0396' => 'cru', 'Carub.0007s0397' => 'cru', 'Carub.0007s1608' => 'cru', 'Carub.0008s1068' => 'cru', 'Carub.0008s1077' => 'cru', 'Ca_16158_v3' => 'car', 'Ca_17571_v3' => 'car', 'Ca_21936_v3' => 'car', 'Ca_22350_v3' => 'car', 'CBR_g22445' => 'cbr', 'CBR_g26290' => 'cbr', 'Cc04_g09610' => 'ccan', 'Cc04_g12280' => 'ccan', 'Cc07_g10230' => 'ccan', 'CDE02G0093' => 'cde', 'CDE02G0701' => 'cde', 'CDE04G1050' => 'cde', 'CDE05G1833' => 'cde', 'CDE05G3058' => 'cde', 'CDE05G3380' => 'cde', 'CDE06G0536' => 'cde', 'Cfa006923' => 'cfa', 'Cfa009402' => 'cfa', 'Cfa018751' => 'cfa', 'Cfa019164' => 'cfa', 'Cfa022935' => 'cfa', 'Ciclev10019081m.g' => 'ccl', 'Ciclev10025076m.g' => 'ccl', 'Ciclev10030712m.g' => 'ccl', 'Ciclev10033760m.g' => 'ccl', 'CiPaw.05G105600' => 'cil', 'CiPaw.08G136700' => 'cil', 'CiPaw.11G003900' => 'cil', 'CiPaw.11G023700' => 'cil', 'CiPaw.12G003700' => 'cil', 'ClCG06G017100' => 'cla', 'ClCG06G018110' => 'cla', 'ClCG07G008800' => 'cla', 'ClCG07G015330' => 'cla', 'COL.COLO4_13698' => 'col', 'COL.COLO4_16659' => 'col', 'COL.COLO4_21986' => 'col', 'COL.COLO4_24049' => 'col', 'COL.COLO4_29061' => 'col', 'COL.COLO4_29075' => 'col', 'COL.COLO4_30094' => 'col', 'Cpa.g.c33689' => 'cpa', 'Cpa.g.sc108.39' => 'cpa', 'Cpa.g.sc108.41' => 'cpa', 'Cpa.g.sc1163.1' => 'cpa', 'Cpa.g.sc4.155' => 'cpa', 'Cpa.g.sc6.194' => 'cpa', 'CsaV3_1G000340' => 'csa', 'CsaV3_1G001400' => 'csa', 'CsaV3_4G002220' => 'csa', 'CsaV3_4G005370' => 'csa', 'CSS0007487' => 'camsi', 'CSS0008066' => 'camsi', 'CSS0009120' => 'camsi', 'CSS0015512' => 'camsi', 'CSS0022409' => 'camsi', 'CSS0025358' => 'camsi', 'CSS0044547' => 'camsi', 'DCAR_013057' => 'dca', 'DCAR_015058' => 'dca', 'DCAR_016027' => 'dca', 'DCAR_017327' => 'dca', 'DCAR_020743' => 'dca', 'DCAR_026157' => 'dca', 'DCAR_032339' => 'dca', 'DCAR_032340' => 'dca', 'Dinv11200' => 'din', 'Dinv11201' => 'din', 'Dinv20631' => 'din', 'Dinv23182' => 'din', 'Dinv33466' => 'din', 'Dinv33583' => 'din', 'Dinv38565' => 'din', 'Duzib068G0200' => 'dzi', 'Duzib147G0132' => 'dzi', 'Duzib147G0635' => 'dzi', 'Duzib205G1670' => 'dzi', 'Duzib251G0606' => 'dzi', 'ECA232G3336' => 'eca', 'ECA232G3763' => 'eca', 'ECA232G4845' => 'eca', 'ECA234G1607' => 'eca', 'ECA246G0932' => 'eca', 'ECA247G0781' => 'eca', 'ECA247G1932' => 'eca', 'ECA247G2079' => 'eca', 'ECA247G3338' => 'eca', 'ECA247G4115' => 'eca', 'EL10Ac3g06552' => 'bvu', 'EL10Ac5g10721' => 'bvu', 'EL10Ac5g10722' => 'bvu', 'EL10Ac5g10723' => 'bvu', 'EL10Ac5g11361' => 'bvu', 'EL10Ac6g13553' => 'bvu', 'EL10As8g23872' => 'bvu', 'Eucgr.B00250' => 'egr', 'Eucgr.B00251' => 'egr', 'Eucgr.B03533' => 'egr', 'Eucgr.I02381' => 'egr', 'Eucgr.K02700' => 'egr', 'FAN02G0174' => 'fan', 'FAN02G3146' => 'fan', 'FAN04G1672' => 'fan', 'FAN04G2273' => 'fan', 'FAN05G2791' => 'fan', 'FAN05G4035' => 'fan', 'FAN07G0834' => 'fan', 'FAN08G1198' => 'fan', 'FAN09G4182' => 'fan', 'FAN12G0496' => 'fan', 'FAN13G1027' => 'fan', 'FAN13G2951' => 'fan', 'FAN14G0705' => 'fan', 'FAN14G0720' => 'fan', 'FAN17G0201' => 'fan', 'FAN17G2665' => 'fan', 'FAN18G1456' => 'fan', 'FAN18G1525' => 'fan', 'FAN18G3500' => 'fan', 'FAN28G2670' => 'fan', 'FvH4_1g12391' => 'fve', 'FvH4_4g23220' => 'fve', 'FvH4_5g08810' => 'fve', 'FvH4_5g28960' => 'fve', 'FvH4_6g42820' => 'fve', 'FvH4_6g51110' => 'fve', 'Glyma.02G051802' => 'gma', 'Glyma.04G185300' => 'gma', 'Glyma.05G202900' => 'gma', 'Glyma.08G010300' => 'gma', 'Glyma.16G131900' => 'gma', 'Glyma.17G087900' => 'gma', 'Gohir.A07G048600' => 'ghi', 'Gohir.A11G179000' => 'ghi', 'Gohir.A12G140900' => 'ghi', 'Gohir.A12G140950' => 'ghi', 'Gohir.A12G191700' => 'ghi', 'Gohir.A13G086300' => 'ghi', 'Gohir.D07G052900' => 'ghi', 'Gohir.D11G186600' => 'ghi', 'Gohir.D12G145575' => 'ghi', 'Gohir.D12G145650' => 'ghi', 'Gohir.D12G145725' => 'ghi', 'Gohir.D12G194050' => 'ghi', 'Gohir.D13G091800' => 'ghi', 'Gorai.001G055900' => 'gra', 'Gorai.007G198400' => 'gra', 'Gorai.008G157000' => 'gra', 'Gorai.008G157100' => 'gra', 'Gorai.008G208700' => 'gra', 'Gorai.010G138700' => 'gra', 'GSVIVG01000977001' => 'vvi', 'GSVIVG01007708001' => 'vvi', 'GSVIVG01008587001' => 'vvi', 'GSVIVG01018849001' => 'vvi', 'GSVIVG01032432001' => 'vvi', 'HanXRQChr02g0034131' => 'han', 'HanXRQChr02g0035981' => 'han', 'HanXRQChr02g0035991' => 'han', 'HanXRQChr05g0155611' => 'han', 'HanXRQChr05g0155621' => 'han', 'HanXRQChr08g0236501' => 'han', 'HanXRQChr09g0261321' => 'han', 'HanXRQChr09g0272081' => 'han', 'HanXRQChr10g0310741' => 'han', 'HanXRQChr11g0325591' => 'han', 'HanXRQChr12g0385691' => 'han', 'HanXRQChr13g0387801' => 'han', 'HanXRQChr15g0463011' => 'han', 'Haze_03826' => 'cav', 'Haze_03827' => 'cav', 'Haze_07183' => 'cav', 'Haze_07537' => 'cav', 'Haze_07539' => 'cav', 'Haze_12461' => 'cav', 'Haze_16115' => 'cav', 'Haze_16808' => 'cav', 'Haze_18531' => 'cav', 'Hma1.2p1_0046F.1_g026700' => 'hma', 'Hma1.2p1_0046F.1_g026710' => 'hma', 'Hma1.2p1_0168F.1_g074340' => 'hma', 'Hma1.2p1_0266F.1_g107030' => 'hma', 'Hma1.2p1_0266F.1_g107060' => 'hma', 'Hma1.2p1_0275F.1_g110510' => 'hma', 'Hma1.2p1_0592F.1_g185490' => 'hma', 'Hma1.2p1_0592F.1_g185500' => 'hma', 'Hma1.2p1_0592F.1_g185510' => 'hma', 'Hma1.2p1_0592F.1_g185520' => 'hma', 'Hma1.2p1_0592F.1_g185530' => 'hma', 'Hma1.2p1_0818F.1_g223450' => 'hma', 'HPP92_009708' => 'vpl', 'HPP92_009793' => 'vpl', 'HPP92_009796' => 'vpl', 'HPP92_009797' => 'vpl', 'HPP92_014940' => 'vpl', 'HPP92_014988' => 'vpl', 'Hund02463' => 'sun', 'Hund02760' => 'sun', 'Hund05071' => 'sun', 'Hund10108' => 'sun', 'Hund11204' => 'sun', 'Hund14016' => 'sun', 'Hund16464' => 'sun', 'Lalb_Chr09g0333391' => 'lal', 'Lalb_Chr11g0070461' => 'lal', 'Lalb_Chr12g0201671' => 'lal', 'Lalb_Chr13g0297161' => 'lal', 'Lj1g0002823' => 'lja', 'Lj3C1074T6' => 'lonja', 'Lj4A212T28' => 'lonja', 'Lj4g0005516' => 'lja', 'Lj4g0013705' => 'lja', 'Lj4g0027865' => 'lja', 'Lj5C92G16' => 'lonja', 'Lj5C92T12' => 'lonja', 'Lj7C596T3' => 'lonja', 'Lj9A446G59' => 'lonja', 'Lj9A482G21' => 'lonja', 'Lsat_1_v5_gn_1_28261' => 'lsa', 'Lsat_1_v5_gn_1_28281' => 'lsa', 'Lsat_1_v5_gn_1_32721' => 'lsa', 'Lsat_1_v5_gn_4_151760' => 'lsa', 'Lsat_1_v5_gn_4_2120' => 'lsa', 'Lsat_1_v5_gn_4_75761' => 'lsa', 'Lsat_1_v5_gn_5_10920' => 'lsa', 'Manes.02G099900' => 'mes', 'Manes.11G096200' => 'mes', 'Manes.12G007200' => 'mes', 'Manes.14G048300' => 'mes', 'Manes.17G114700' => 'mes', 'Mapoly0002s0070' => 'mpo', 'Mapoly0029s0099' => 'mpo', 'MBI07_g24742_MAGBIO' => 'mbi', 'MBI10_g27988_MAGBIO' => 'mbi', 'MBI11_g13057_MAGBIO' => 'mbi', 'MD02G1137200' => 'mdo', 'MD06G1137200' => 'mdo', 'MD07G1122300' => 'mdo', 'MD09G1078200' => 'mdo', 'MD13G1123700' => 'mdo', 'MD14G1151900' => 'mdo', 'MD17G1030900' => 'mdo', 'MD17G1068200' => 'mdo', 'MD17G1068600' => 'mdo', 'Medtr3g077540' => 'mtr', 'Medtr4g105530' => 'mtr', 'Medtr8g076580' => 'mtr', 'Medtr8g076590' => 'mtr', 'Medtr8g096410' => 'mtr', 'MELO3C016411.2' => 'cme', 'MELO3C017780.2' => 'cme', 'MELO3C022560.2' => 'cme', 'MELO3C026187.2' => 'cme', 'MELO3C026286.2' => 'cme', 'MELO3C032854.2' => 'cme', 'Migut.H02495' => 'egut', 'Migut.I00561' => 'egut', 'Migut.K01015' => 'egut', 'Migut.K01016' => 'egut', 'Migut.L00743' => 'egut', 'Migut.L00744' => 'egut', 'Migut.L00746' => 'egut', 'Migut.L00798' => 'egut', 'Migut.L00799' => 'egut', 'Migut.N02096' => 'egut', 'MSTRG.11259' => 'ama', 'MSTRG.23142' => 'ama', 'MSTRG.2499' => 'ama', 'Nitab4.5_0000003g0730' => 'nta', 'Nitab4.5_0000137g0020' => 'nta', 'Nitab4.5_0000721g0210' => 'nta', 'Nitab4.5_0000723g0050' => 'nta', 'Nitab4.5_0000913g0070' => 'nta', 'Nitab4.5_0001332g0040' => 'nta', 'Nitab4.5_0001771g0050' => 'nta', 'Nitab4.5_0001918g0050' => 'nta', 'Nitab4.5_0002686g0030' => 'nta', 'Nitab4.5_0003156g0020' => 'nta', 'Nitab4.5_0003383g0040' => 'nta', 'Nitab4.5_0003918g0010' => 'nta', 'Nitab4.5_0006760g0010' => 'nta', 'Nn1g05981' => 'nnu', 'Nn1g06288' => 'nnu', 'Nn3g16371' => 'nnu', 'Nn3g16786' => 'nnu', 'Nn4g22232' => 'nnu', 'Oeu005144.1' => 'oeu', 'Oeu005145.1' => 'oeu', 'Oeu011348.1' => 'oeu', 'Oeu016415.1' => 'oeu', 'Oeu023501.1' => 'oeu', 'Oeu044473.1' => 'oeu', 'Oeu048892.2' => 'oeu', 'Os01g0549200' => 'osa', 'Os02g0469300' => 'osa', 'Os04g0311100' => 'osa', 'Os06g0474900' => 'osa', 'Os10g0181700' => 'osa', 'Os11g0454800' => 'osa', 'Peaxi162Scf00037g00714' => 'pax', 'Peaxi162Scf00084g01217' => 'pax', 'Peaxi162Scf00257g00217' => 'pax', 'Peaxi162Scf00516g00215' => 'pax', 'Peaxi162Scf00689g00123' => 'pax', 'PGR044G2719' => 'pgr', 'PGR083G1360' => 'pgr', 'PGR102G2849' => 'pgr', 'PGR119G2534' => 'pgr', 'PGSC0003DMG400003538' => 'stu', 'PGSC0003DMG400028138' => 'stu', 'PGSC0003DMG400031732' => 'stu', 'PGSC0003DMG400038165' => 'stu', 'Phvul.002G284600' => 'pvu', 'Phvul.003G258200' => 'pvu', 'Phvul.009G176500' => 'pvu', 'Potri.003G167201' => 'ptr', 'Potri.005G118400' => 'ptr', 'Potri.012G089000' => 'ptr', 'Potri.012G102800' => 'ptr', 'Potri.015G079400' => 'ptr', 'Potri.015G100900' => 'ptr', 'Pp3c14_9810' => 'ppa', 'Pp3c15_10450' => 'ppa', 'Pp3c20_19150' => 'ppa', 'Pp3c23_12740' => 'ppa', 'Pp3c23_6310' => 'ppa', 'Pp3c24_3720' => 'ppa', 'Pp3c27_2580' => 'ppa', 'Pp3c9_8990' => 'ppa', 'PRCOL_00002854' => 'pco', 'Prupe.1G221200' => 'ppe', 'Prupe.3G289000' => 'ppe', 'Prupe.5G147000' => 'ppe', 'Prupe.6G157300' => 'ppe', 'Prupe.7G163400' => 'ppe', 'Psat0s2177g0040' => 'psa', 'Psat3g174760' => 'psa', 'Psat3g192160' => 'psa', 'Psat4g058520' => 'psa', 'Psat4g096840' => 'psa', 'Psat7g037320' => 'psa', 'PSO017G1274' => 'pso', 'PSO017G5166' => 'pso', 'PSO063G4558' => 'pso', 'PSO170G4458' => 'pso', 'PSO170G5005' => 'pso', 'PSO210G6156' => 'pso', 'PSO210G6635' => 'pso', 'PSO210G7397' => 'pso', 'PSO210G7700' => 'pso', 'PSO455G0035' => 'pso', 'PSO455G0180' => 'pso', 'PSO478G4515' => 'pso', 'PSO832G1305' => 'pso', 'PSO832G3489' => 'pso', 'QL02p075247' => 'qlo', 'QL03p051148' => 'qlo', 'QL05p010313' => 'qlo', 'QL06p034627' => 'qlo', 'QL10p001889' => 'qlo', 'QL10p010846' => 'qlo', 'RcHm_v2.0_Chr1g0350621' => 'rch', 'RcHm_v2.0_Chr1g0350641' => 'rch', 'RcHm_v2.0_Chr2g0092891' => 'rch', 'RcHm_v2.0_Chr2g0100251' => 'rch', 'RcHm_v2.0_Chr2g0158661' => 'rch', 'RcHm_v2.0_Chr2g0172741' => 'rch', 'RcHm_v2.0_Chr4g0429571' => 'rch', 'RcHm_v2.0_Chr5g0042471' => 'rch', 'RcHm_v2.0_Chr7g0189451' => 'rch', 'Rhsim08G0052000' => 'rsi', 'Rhsim08G0174400' => 'rsi', 'Rhsim08G0193200' => 'rsi', 'Rhsim10G0214800' => 'rsi', 'Rhsim10G0214900' => 'rsi', 'Rhsim10G0215000' => 'rsi', 'Rhsim12G0022900' => 'rsi', 'Rhsim12G0177500' => 'rsi', 'Rhsim12G0177700' => 'rsi', 'Sabra03G0122600' => 'sbr', 'Sabra05G0097400' => 'sbr', 'Sabra12G0064100' => 'sbr', 'Sabra15G0121300' => 'sbr', 'SalBow2G0642' => 'sbo', 'SalBow5G2667' => 'sbo', 'SalBow5G4873' => 'sbo', 'SalBow8G2395' => 'sbo', 'Sc03g0003290' => 'sci', 'Sc10g0010130' => 'sci', 'Sc22g0003650' => 'sci', 'Sed0001603' => 'sed', 'Sed0004259' => 'sed', 'Sed0006789' => 'sed', 'Sed0011838' => 'sed', 'Sed0012964' => 'sed', 'Sed0016383' => 'sed', 'Sed0019010' => 'sed', 'Sed0020188' => 'sed', 'SEGI_04702' => 'sgi', 'SEGI_17231' => 'sgi', 'SEGI_18877' => 'sgi', 'SEGI_25196' => 'sgi', 'SEGI_25515' => 'sgi', 'SEGI_28445' => 'sgi', 'SEGI_37452' => 'sgi', 'SGA_v2.0_scaffold188G40336' => 'sas', 'SGA_v2.0_scaffold228G43247' => 'sas', 'SGA_v2.0_scaffold280G46853' => 'sas', 'SGA_v2.0_scaffold34G13808' => 'sas', 'SGA_v2.0_scaffold40G15576' => 'sas', 'SGA_v2.0_scaffold611G53188' => 'sas', 'SGA_v2.0_scaffold78G25461' => 'sas', 'SGA_v2.0_scaffold90G27888' => 'sas', 'SHI08601' => 'shi', 'SHI08606' => 'shi', 'SHI17117' => 'shi', 'SHI17119' => 'shi', 'SMO118G0201' => 'smo', 'SMO169G0247' => 'smo', 'SMO176G0006' => 'smo', 'SMO176G0015' => 'smo', 'SMO202G0006' => 'smo', 'SMO240G0050' => 'smo', 'SMO286G0009' => 'smo', 'SMO338G0033' => 'smo', 'SMO356G0533' => 'smo', 'SMO364G0382' => 'smo', 'SMO367G0166' => 'smo', 'SMO367G1098' => 'smo', 'Solyc01g009920.3' => 'sly', 'Solyc01g099300.3' => 'sly', 'Solyc02g084700.3' => 'sly', 'Solyc03g097520.3' => 'sly', 'Solyc06g071580.3' => 'sly', 'Solyc10g081760.3' => 'sly', 'Sopen01g005480' => 'spe', 'Sopen01g042850' => 'spe', 'Sopen02g029370' => 'spe', 'Sopen03g028280' => 'spe', 'Sopen06g027870' => 'spe', 'Sopen10g032270' => 'spe', 'Sp5g18180' => 'spa', 'Sp6g12880' => 'spa', 'Sp6g30850' => 'spa', 'Sp7g22960' => 'spa', 'Sp7g34010' => 'spa', 'SpUn1326_0010' => 'spa', 'TAR371G0242' => 'tar', 'TAR622G0638' => 'tar', 'TAR628G1548' => 'tar', 'TAR629G1079' => 'tar', 'TAR629G3413' => 'tar', 'THA.LOC104804249' => 'tha', 'THA.LOC104808315' => 'tha', 'THA.LOC104809238' => 'tha', 'THA.LOC104825484' => 'tha', 'Thecc.01G025500' => 'tca', 'Thecc.03G015800' => 'tca', 'Thecc.03G018000' => 'tca', 'Thecc.03G134800' => 'tca', 'Thecc.04G014700' => 'tca', 'Thhalv10006991m.g' => 'esa', 'Thhalv10012707m.g' => 'esa', 'Thhalv10015739m.g' => 'esa', 'Thhalv10024553m.g' => 'esa', 'Thhalv10024673m.g' => 'esa', 'Thhalv10029187m.g' => 'esa', 'TPR.G12971' => 'tpr', 'TPR.G29396' => 'tpr', 'TPR.G33376' => 'tpr', 'TPR.G35508' => 'tpr', 'TPR.G35516' => 'tpr', 'TPR.G37317' => 'tpr', 'TPR.G37389' => 'tpr', 'TPR.G37523' => 'tpr', 'TPR.G559' => 'tpr', 'TWI14G0070' => 'twi', 'TWI14G0729' => 'twi', 'TWI18G0596' => 'twi', 'TWI39G0780' => 'twi', 'TWI39G0850' => 'twi', 'TWI73G1052' => 'twi', 'unitig_52.g17485' => 'ugi', 'unitig_61.g26355' => 'ugi', 'vmacro01040' => 'vma', 'vmacro16731' => 'vma', 'vmacro18270' => 'vma', 'vmacro19142' => 'vma', 'vmacro19407' => 'vma', 'vmacro19408' => 'vma', 'vmacro21899' => 'vma', 'vmacro21900' => 'vma', 'vmacro21901' => 'vma', 'VMungo0251G0490' => 'vmu', 'VMungo0251G1748' => 'vmu', 'VMungo1309G0421' => 'vmu', 'Zm00001eb086500' => 'zma', 'Zm00001eb150680' => 'zma', 'Zm00001eb162330' => 'zma', 'Zm00001eb203130' => 'zma', 'Zm00001eb369480' => 'zma', 'Zm00001eb382340' => 'zma', 'Zm00001eb416360' => 'zma' ), 'gf_id' => 'HOM05D000902', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000902' ), 'data_identifier' => 'HOM05D000902', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000902', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '663', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02470' => 'bna', 'A01p16260' => 'bna', 'A02p01680' => 'bna', 'A03p16600' => 'bna', 'A03p55660' => 'bna', 'A03p64160' => 'bna', 'A03p64170' => 'bna', 'A08p31900' => 'bna', 'A09p59530' => 'bna', 'A10p08230' => 'bna', 'A10p25090' => 'bna', 'Aa31LG3G7100' => 'aar', 'Aa31LG3G7110' => 'aar', 'Aa31LG6G13160' => 'aar', 'Aa31LG7G10770' => 'aar', 'Aa31LG7G3830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2723' => 'aag', 'Actinidia08045' => 'ach', 'Actinidia08888' => 'ach', 'Actinidia18333' => 'ach', 'Actinidia19334' => 'ach', 'Actinidia25552' => 'ach', 'Actinidia26089' => 'ach', 'Actinidia30615' => 'ach', 'Actinidia30616' => 'ach', 'Actinidia33083' => 'ach', 'Actinidia35762' => 'ach', 'Ah.02g110620' => 'amhyb', 'Ah.11g046390' => 'amhyb', 'AL1G31670' => 'aly', 'AL6G23730' => 'aly', 'AL7G14740' => 'aly', 'AL7G14750' => 'aly', 'AL7G14760' => 'aly', 'AL7G28220' => 'aly', 'AL8G24940' => 'aly', 'Aqoxy3G01665' => 'aox', 'Aqoxy3G02853' => 'aox', 'Aqoxy5G01513' => 'aox', 'Aqoxy5G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8SKA4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ75LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKDA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0LJZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7REX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZP4YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWX7I5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2QKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS0L9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPCD8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q161UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC7XCF' => 'arhy', 'AT1G19100' => 'ath', 'AT4G24970' => 'ath', 'AT4G36270' => 'ath', 'AT4G36280' => 'ath', 'AT4G36290' => 'ath', 'AT5G13130' => 'ath', 'AT5G50780' => 'ath', 'ATR0582G266' => 'atr', 'ATR0661G195' => 'atr', 'ATR1152G031' => 'atr', 'Atru.chr11.2382' => 'acertr', 'Atru.chr12.2337' => 'acertr', 'Atru.chr3.744' => 'acertr', 'Atru.chr6.1870' => 'acertr', 'Atru.chr9.2515' => 'acertr', 'AUR62004120' => 'cqu', 'AUR62005667' => 'cqu', 'AUR62007634' => 'cqu', 'AUR62008186' => 'cqu', 'AUR62008187' => 'cqu', 'AUR62008188' => 'cqu', 'AUR62027954' => 'cqu', 'AUR62028766' => 'cqu', 'AUR62028767' => 'cqu', 'AUR62028768' => 'cqu', 'AUR62028886' => 'cqu', 'AUR62029563' => 'cqu', 'AUR62038832' => 'cqu', 'BcaB01g04149' => 'bca', 'BcaB03g12940' => 'bca', 'BcaB03g13090' => 'bca', 'BcaB03g14466' => 'bca', 'BcaB05g24035' => 'bca', 'BcaC01g06050' => 'bca', 'BcaC04g19148' => 'bca', 'BcaC04g20761' => 'bca', 'BcaC06g32845' => 'bca', 'BcaC07g41274' => 'bca', 'BcaC09g50827' => 'bca', 'BcaNung00741' => 'bca', 'BcaNung00742' => 'bca', 'BcaNung01859' => 'bca', 'BcaNung03985' => 'bca', 'BcaNung03989' => 'bca', 'BcaNung05661' => 'bca', 'BolC1t00257H' => 'bol', 'BolC1t01956H' => 'bol', 'BolC2t06534H' => 'bol', 'BolC3t14334H' => 'bol', 'BolC5t30451H' => 'bol', 'BolC7t45880H' => 'bol', 'BolC7t46586H' => 'bol', 'BolC8t49301H' => 'bol', 'BolC8t51837H' => 'bol', 'BolC9t56822H' => 'bol', 'BolC9t59235H' => 'bol', 'BraA01t00234Z' => 'bra', 'BraA01t01563Z' => 'bra', 'BraA02t05147Z' => 'bra', 'BraA03t10947Z' => 'bra', 'BraA03t14633Z' => 'bra', 'BraA08t35112Z' => 'bra', 'BraA09t41330Z' => 'bra', 'BraA10t44570Z' => 'bra', 'C01p02670' => 'bna', 'C01p20260' => 'bna', 'C02p05890' => 'bna', 'C03p19530' => 'bna', 'C05p17470' => 'bna', 'C07p53900' => 'bna', 'C07p61630' => 'bna', 'C08p16800' => 'bna', 'C08p42810' => 'bna', 'C09p39480' => 'bna', 'C09p63980' => 'bna', 'CAN.G1001.7' => 'can', 'CAN.G1034.55' => 'can', 'CAN.G143.7' => 'can', 'CAN.G3340.1' => 'can', 'CAN.G358.19' => 'can', 'CAN.G373.2' => 'can', 'CAN.G674.16' => 'can', 'CAN.G674.17' => 'can', 'CAN.G674.18' => 'can', 'CAN.G732.2' => 'can', 'CAN.G732.3' => 'can', 'CAN.G993.39' => 'can', 'CANSAT01G2052' => 'cansat', 'CANSAT80G0070' => 'cansat', 'CANSAT80G0483' => 'cansat', 'CANSAT80G0625' => 'cansat', 'CARHR019690' => 'chi', 'CARHR080280' => 'chi', 'CARHR152750' => 'chi', 'CARHR152760' => 'chi', 'CARHR152770' => 'chi', 'CARHR200340' => 'chi', 'CARHR232370' => 'chi', 'CARHR244670' => 'chi', 'CARHR244680' => 'chi', 'CARHR257520' => 'chi', 'Carub.0001s1872' => 'cru', 'Carub.0006s1130' => 'cru', 'Carub.0007s0396' => 'cru', 'Carub.0007s0397' => 'cru', 'Carub.0007s1608' => 'cru', 'Carub.0008s1068' => 'cru', 'Carub.0008s1077' => 'cru', 'Ca_16158_v3' => 'car', 'Ca_17571_v3' => 'car', 'Ca_21936_v3' => 'car', 'Ca_22350_v3' => 'car', 'CBR_g22445' => 'cbr', 'CBR_g26290' => 'cbr', 'Cc04_g09610' => 'ccan', 'Cc04_g12280' => 'ccan', 'Cc07_g10230' => 'ccan', 'CDE02G0093' => 'cde', 'CDE02G0701' => 'cde', 'CDE04G1050' => 'cde', 'CDE05G1833' => 'cde', 'CDE05G3058' => 'cde', 'CDE05G3380' => 'cde', 'CDE06G0536' => 'cde', 'Cfa006923' => 'cfa', 'Cfa009402' => 'cfa', 'Cfa018751' => 'cfa', 'Cfa019164' => 'cfa', 'Cfa022935' => 'cfa', 'Ciclev10019081m.g' => 'ccl', 'Ciclev10025076m.g' => 'ccl', 'Ciclev10030712m.g' => 'ccl', 'Ciclev10033760m.g' => 'ccl', 'CiPaw.05G105600' => 'cil', 'CiPaw.08G136700' => 'cil', 'CiPaw.11G003900' => 'cil', 'CiPaw.11G023700' => 'cil', 'CiPaw.12G003700' => 'cil', 'ClCG06G017100' => 'cla', 'ClCG06G018110' => 'cla', 'ClCG07G008800' => 'cla', 'ClCG07G015330' => 'cla', 'COL.COLO4_13698' => 'col', 'COL.COLO4_16659' => 'col', 'COL.COLO4_21986' => 'col', 'COL.COLO4_24049' => 'col', 'COL.COLO4_29061' => 'col', 'COL.COLO4_29075' => 'col', 'COL.COLO4_30094' => 'col', 'Cpa.g.c33689' => 'cpa', 'Cpa.g.sc108.39' => 'cpa', 'Cpa.g.sc108.41' => 'cpa', 'Cpa.g.sc1163.1' => 'cpa', 'Cpa.g.sc4.155' => 'cpa', 'Cpa.g.sc6.194' => 'cpa', 'CsaV3_1G000340' => 'csa', 'CsaV3_1G001400' => 'csa', 'CsaV3_4G002220' => 'csa', 'CsaV3_4G005370' => 'csa', 'CSS0007487' => 'camsi', 'CSS0008066' => 'camsi', 'CSS0009120' => 'camsi', 'CSS0015512' => 'camsi', 'CSS0022409' => 'camsi', 'CSS0025358' => 'camsi', 'CSS0044547' => 'camsi', 'DCAR_013057' => 'dca', 'DCAR_015058' => 'dca', 'DCAR_016027' => 'dca', 'DCAR_017327' => 'dca', 'DCAR_020743' => 'dca', 'DCAR_026157' => 'dca', 'DCAR_032339' => 'dca', 'DCAR_032340' => 'dca', 'Dinv11200' => 'din', 'Dinv11201' => 'din', 'Dinv20631' => 'din', 'Dinv23182' => 'din', 'Dinv33466' => 'din', 'Dinv33583' => 'din', 'Dinv38565' => 'din', 'Duzib068G0200' => 'dzi', 'Duzib147G0132' => 'dzi', 'Duzib147G0635' => 'dzi', 'Duzib205G1670' => 'dzi', 'Duzib251G0606' => 'dzi', 'ECA232G3336' => 'eca', 'ECA232G3763' => 'eca', 'ECA232G4845' => 'eca', 'ECA234G1607' => 'eca', 'ECA246G0932' => 'eca', 'ECA247G0781' => 'eca', 'ECA247G1932' => 'eca', 'ECA247G2079' => 'eca', 'ECA247G3338' => 'eca', 'ECA247G4115' => 'eca', 'EL10Ac3g06552' => 'bvu', 'EL10Ac5g10721' => 'bvu', 'EL10Ac5g10722' => 'bvu', 'EL10Ac5g10723' => 'bvu', 'EL10Ac5g11361' => 'bvu', 'EL10Ac6g13553' => 'bvu', 'EL10As8g23872' => 'bvu', 'Eucgr.B00250' => 'egr', 'Eucgr.B00251' => 'egr', 'Eucgr.B03533' => 'egr', 'Eucgr.I02381' => 'egr', 'Eucgr.K02700' => 'egr', 'FAN02G0174' => 'fan', 'FAN02G3146' => 'fan', 'FAN04G1672' => 'fan', 'FAN04G2273' => 'fan', 'FAN05G2791' => 'fan', 'FAN05G4035' => 'fan', 'FAN07G0834' => 'fan', 'FAN08G1198' => 'fan', 'FAN09G4182' => 'fan', 'FAN12G0496' => 'fan', 'FAN13G1027' => 'fan', 'FAN13G2951' => 'fan', 'FAN14G0705' => 'fan', 'FAN14G0720' => 'fan', 'FAN17G0201' => 'fan', 'FAN17G2665' => 'fan', 'FAN18G1456' => 'fan', 'FAN18G1525' => 'fan', 'FAN18G3500' => 'fan', 'FAN28G2670' => 'fan', 'FvH4_1g12391' => 'fve', 'FvH4_4g23220' => 'fve', 'FvH4_5g08810' => 'fve', 'FvH4_5g28960' => 'fve', 'FvH4_6g42820' => 'fve', 'FvH4_6g51110' => 'fve', 'Glyma.02G051802' => 'gma', 'Glyma.04G185300' => 'gma', 'Glyma.05G202900' => 'gma', 'Glyma.08G010300' => 'gma', 'Glyma.16G131900' => 'gma', 'Glyma.17G087900' => 'gma', 'Gohir.A07G048600' => 'ghi', 'Gohir.A11G179000' => 'ghi', 'Gohir.A12G140900' => 'ghi', 'Gohir.A12G140950' => 'ghi', 'Gohir.A12G191700' => 'ghi', 'Gohir.A13G086300' => 'ghi', 'Gohir.D07G052900' => 'ghi', 'Gohir.D11G186600' => 'ghi', 'Gohir.D12G145575' => 'ghi', 'Gohir.D12G145650' => 'ghi', 'Gohir.D12G145725' => 'ghi', 'Gohir.D12G194050' => 'ghi', 'Gohir.D13G091800' => 'ghi', 'Gorai.001G055900' => 'gra', 'Gorai.007G198400' => 'gra', 'Gorai.008G157000' => 'gra', 'Gorai.008G157100' => 'gra', 'Gorai.008G208700' => 'gra', 'Gorai.010G138700' => 'gra', 'GSVIVG01000977001' => 'vvi', 'GSVIVG01007708001' => 'vvi', 'GSVIVG01008587001' => 'vvi', 'GSVIVG01018849001' => 'vvi', 'GSVIVG01032432001' => 'vvi', 'HanXRQChr02g0034131' => 'han', 'HanXRQChr02g0035981' => 'han', 'HanXRQChr02g0035991' => 'han', 'HanXRQChr05g0155611' => 'han', 'HanXRQChr05g0155621' => 'han', 'HanXRQChr08g0236501' => 'han', 'HanXRQChr09g0261321' => 'han', 'HanXRQChr09g0272081' => 'han', 'HanXRQChr10g0310741' => 'han', 'HanXRQChr11g0325591' => 'han', 'HanXRQChr12g0385691' => 'han', 'HanXRQChr13g0387801' => 'han', 'HanXRQChr15g0463011' => 'han', 'Haze_03826' => 'cav', 'Haze_03827' => 'cav', 'Haze_07183' => 'cav', 'Haze_07537' => 'cav', 'Haze_07539' => 'cav', 'Haze_12461' => 'cav', 'Haze_16115' => 'cav', 'Haze_16808' => 'cav', 'Haze_18531' => 'cav', 'Hma1.2p1_0046F.1_g026700' => 'hma', 'Hma1.2p1_0046F.1_g026710' => 'hma', 'Hma1.2p1_0168F.1_g074340' => 'hma', 'Hma1.2p1_0266F.1_g107030' => 'hma', 'Hma1.2p1_0266F.1_g107060' => 'hma', 'Hma1.2p1_0275F.1_g110510' => 'hma', 'Hma1.2p1_0592F.1_g185490' => 'hma', 'Hma1.2p1_0592F.1_g185500' => 'hma', 'Hma1.2p1_0592F.1_g185510' => 'hma', 'Hma1.2p1_0592F.1_g185520' => 'hma', 'Hma1.2p1_0592F.1_g185530' => 'hma', 'Hma1.2p1_0818F.1_g223450' => 'hma', 'HPP92_009708' => 'vpl', 'HPP92_009793' => 'vpl', 'HPP92_009796' => 'vpl', 'HPP92_009797' => 'vpl', 'HPP92_014940' => 'vpl', 'HPP92_014988' => 'vpl', 'Hund02463' => 'sun', 'Hund02760' => 'sun', 'Hund05071' => 'sun', 'Hund10108' => 'sun', 'Hund11204' => 'sun', 'Hund14016' => 'sun', 'Hund16464' => 'sun', 'Lalb_Chr09g0333391' => 'lal', 'Lalb_Chr11g0070461' => 'lal', 'Lalb_Chr12g0201671' => 'lal', 'Lalb_Chr13g0297161' => 'lal', 'Lj1g0002823' => 'lja', 'Lj3C1074T6' => 'lonja', 'Lj4A212T28' => 'lonja', 'Lj4g0005516' => 'lja', 'Lj4g0013705' => 'lja', 'Lj4g0027865' => 'lja', 'Lj5C92G16' => 'lonja', 'Lj5C92T12' => 'lonja', 'Lj7C596T3' => 'lonja', 'Lj9A446G59' => 'lonja', 'Lj9A482G21' => 'lonja', 'Lsat_1_v5_gn_1_28261' => 'lsa', 'Lsat_1_v5_gn_1_28281' => 'lsa', 'Lsat_1_v5_gn_1_32721' => 'lsa', 'Lsat_1_v5_gn_4_151760' => 'lsa', 'Lsat_1_v5_gn_4_2120' => 'lsa', 'Lsat_1_v5_gn_4_75761' => 'lsa', 'Lsat_1_v5_gn_5_10920' => 'lsa', 'Manes.02G099900' => 'mes', 'Manes.11G096200' => 'mes', 'Manes.12G007200' => 'mes', 'Manes.14G048300' => 'mes', 'Manes.17G114700' => 'mes', 'Mapoly0002s0070' => 'mpo', 'Mapoly0029s0099' => 'mpo', 'MBI07_g24742_MAGBIO' => 'mbi', 'MBI10_g27988_MAGBIO' => 'mbi', 'MBI11_g13057_MAGBIO' => 'mbi', 'MD02G1137200' => 'mdo', 'MD06G1137200' => 'mdo', 'MD07G1122300' => 'mdo', 'MD09G1078200' => 'mdo', 'MD13G1123700' => 'mdo', 'MD14G1151900' => 'mdo', 'MD17G1030900' => 'mdo', 'MD17G1068200' => 'mdo', 'MD17G1068600' => 'mdo', 'Medtr3g077540' => 'mtr', 'Medtr4g105530' => 'mtr', 'Medtr8g076580' => 'mtr', 'Medtr8g076590' => 'mtr', 'Medtr8g096410' => 'mtr', 'MELO3C016411.2' => 'cme', 'MELO3C017780.2' => 'cme', 'MELO3C022560.2' => 'cme', 'MELO3C026187.2' => 'cme', 'MELO3C026286.2' => 'cme', 'MELO3C032854.2' => 'cme', 'Migut.H02495' => 'egut', 'Migut.I00561' => 'egut', 'Migut.K01015' => 'egut', 'Migut.K01016' => 'egut', 'Migut.L00743' => 'egut', 'Migut.L00744' => 'egut', 'Migut.L00746' => 'egut', 'Migut.L00798' => 'egut', 'Migut.L00799' => 'egut', 'Migut.N02096' => 'egut', 'MSTRG.11259' => 'ama', 'MSTRG.23142' => 'ama', 'MSTRG.2499' => 'ama', 'Nitab4.5_0000003g0730' => 'nta', 'Nitab4.5_0000137g0020' => 'nta', 'Nitab4.5_0000721g0210' => 'nta', 'Nitab4.5_0000723g0050' => 'nta', 'Nitab4.5_0000913g0070' => 'nta', 'Nitab4.5_0001332g0040' => 'nta', 'Nitab4.5_0001771g0050' => 'nta', 'Nitab4.5_0001918g0050' => 'nta', 'Nitab4.5_0002686g0030' => 'nta', 'Nitab4.5_0003156g0020' => 'nta', 'Nitab4.5_0003383g0040' => 'nta', 'Nitab4.5_0003918g0010' => 'nta', 'Nitab4.5_0006760g0010' => 'nta', 'Nn1g05981' => 'nnu', 'Nn1g06288' => 'nnu', 'Nn3g16371' => 'nnu', 'Nn3g16786' => 'nnu', 'Nn4g22232' => 'nnu', 'Oeu005144.1' => 'oeu', 'Oeu005145.1' => 'oeu', 'Oeu011348.1' => 'oeu', 'Oeu016415.1' => 'oeu', 'Oeu023501.1' => 'oeu', 'Oeu044473.1' => 'oeu', 'Oeu048892.2' => 'oeu', 'Os01g0549200' => 'osa', 'Os02g0469300' => 'osa', 'Os04g0311100' => 'osa', 'Os06g0474900' => 'osa', 'Os10g0181700' => 'osa', 'Os11g0454800' => 'osa', 'Peaxi162Scf00037g00714' => 'pax', 'Peaxi162Scf00084g01217' => 'pax', 'Peaxi162Scf00257g00217' => 'pax', 'Peaxi162Scf00516g00215' => 'pax', 'Peaxi162Scf00689g00123' => 'pax', 'PGR044G2719' => 'pgr', 'PGR083G1360' => 'pgr', 'PGR102G2849' => 'pgr', 'PGR119G2534' => 'pgr', 'PGSC0003DMG400003538' => 'stu', 'PGSC0003DMG400028138' => 'stu', 'PGSC0003DMG400031732' => 'stu', 'PGSC0003DMG400038165' => 'stu', 'Phvul.002G284600' => 'pvu', 'Phvul.003G258200' => 'pvu', 'Phvul.009G176500' => 'pvu', 'Potri.003G167201' => 'ptr', 'Potri.005G118400' => 'ptr', 'Potri.012G089000' => 'ptr', 'Potri.012G102800' => 'ptr', 'Potri.015G079400' => 'ptr', 'Potri.015G100900' => 'ptr', 'Pp3c14_9810' => 'ppa', 'Pp3c15_10450' => 'ppa', 'Pp3c20_19150' => 'ppa', 'Pp3c23_12740' => 'ppa', 'Pp3c23_6310' => 'ppa', 'Pp3c24_3720' => 'ppa', 'Pp3c27_2580' => 'ppa', 'Pp3c9_8990' => 'ppa', 'PRCOL_00002854' => 'pco', 'Prupe.1G221200' => 'ppe', 'Prupe.3G289000' => 'ppe', 'Prupe.5G147000' => 'ppe', 'Prupe.6G157300' => 'ppe', 'Prupe.7G163400' => 'ppe', 'Psat0s2177g0040' => 'psa', 'Psat3g174760' => 'psa', 'Psat3g192160' => 'psa', 'Psat4g058520' => 'psa', 'Psat4g096840' => 'psa', 'Psat7g037320' => 'psa', 'PSO017G1274' => 'pso', 'PSO017G5166' => 'pso', 'PSO063G4558' => 'pso', 'PSO170G4458' => 'pso', 'PSO170G5005' => 'pso', 'PSO210G6156' => 'pso', 'PSO210G6635' => 'pso', 'PSO210G7397' => 'pso', 'PSO210G7700' => 'pso', 'PSO455G0035' => 'pso', 'PSO455G0180' => 'pso', 'PSO478G4515' => 'pso', 'PSO832G1305' => 'pso', 'PSO832G3489' => 'pso', 'QL02p075247' => 'qlo', 'QL03p051148' => 'qlo', 'QL05p010313' => 'qlo', 'QL06p034627' => 'qlo', 'QL10p001889' => 'qlo', 'QL10p010846' => 'qlo', 'RcHm_v2.0_Chr1g0350621' => 'rch', 'RcHm_v2.0_Chr1g0350641' => 'rch', 'RcHm_v2.0_Chr2g0092891' => 'rch', 'RcHm_v2.0_Chr2g0100251' => 'rch', 'RcHm_v2.0_Chr2g0158661' => 'rch', 'RcHm_v2.0_Chr2g0172741' => 'rch', 'RcHm_v2.0_Chr4g0429571' => 'rch', 'RcHm_v2.0_Chr5g0042471' => 'rch', 'RcHm_v2.0_Chr7g0189451' => 'rch', 'Rhsim08G0052000' => 'rsi', 'Rhsim08G0174400' => 'rsi', 'Rhsim08G0193200' => 'rsi', 'Rhsim10G0214800' => 'rsi', 'Rhsim10G0214900' => 'rsi', 'Rhsim10G0215000' => 'rsi', 'Rhsim12G0022900' => 'rsi', 'Rhsim12G0177500' => 'rsi', 'Rhsim12G0177700' => 'rsi', 'Sabra03G0122600' => 'sbr', 'Sabra05G0097400' => 'sbr', 'Sabra12G0064100' => 'sbr', 'Sabra15G0121300' => 'sbr', 'SalBow2G0642' => 'sbo', 'SalBow5G2667' => 'sbo', 'SalBow5G4873' => 'sbo', 'SalBow8G2395' => 'sbo', 'Sc03g0003290' => 'sci', 'Sc10g0010130' => 'sci', 'Sc22g0003650' => 'sci', 'Sed0001603' => 'sed', 'Sed0004259' => 'sed', 'Sed0006789' => 'sed', 'Sed0011838' => 'sed', 'Sed0012964' => 'sed', 'Sed0016383' => 'sed', 'Sed0019010' => 'sed', 'Sed0020188' => 'sed', 'SEGI_04702' => 'sgi', 'SEGI_17231' => 'sgi', 'SEGI_18877' => 'sgi', 'SEGI_25196' => 'sgi', 'SEGI_25515' => 'sgi', 'SEGI_28445' => 'sgi', 'SEGI_37452' => 'sgi', 'SGA_v2.0_scaffold188G40336' => 'sas', 'SGA_v2.0_scaffold228G43247' => 'sas', 'SGA_v2.0_scaffold280G46853' => 'sas', 'SGA_v2.0_scaffold34G13808' => 'sas', 'SGA_v2.0_scaffold40G15576' => 'sas', 'SGA_v2.0_scaffold611G53188' => 'sas', 'SGA_v2.0_scaffold78G25461' => 'sas', 'SGA_v2.0_scaffold90G27888' => 'sas', 'SHI08601' => 'shi', 'SHI08606' => 'shi', 'SHI17117' => 'shi', 'SHI17119' => 'shi', 'SMO118G0201' => 'smo', 'SMO169G0247' => 'smo', 'SMO176G0006' => 'smo', 'SMO176G0015' => 'smo', 'SMO202G0006' => 'smo', 'SMO240G0050' => 'smo', 'SMO286G0009' => 'smo', 'SMO338G0033' => 'smo', 'SMO356G0533' => 'smo', 'SMO364G0382' => 'smo', 'SMO367G0166' => 'smo', 'SMO367G1098' => 'smo', 'Solyc01g009920.3' => 'sly', 'Solyc01g099300.3' => 'sly', 'Solyc02g084700.3' => 'sly', 'Solyc03g097520.3' => 'sly', 'Solyc06g071580.3' => 'sly', 'Solyc10g081760.3' => 'sly', 'Sopen01g005480' => 'spe', 'Sopen01g042850' => 'spe', 'Sopen02g029370' => 'spe', 'Sopen03g028280' => 'spe', 'Sopen06g027870' => 'spe', 'Sopen10g032270' => 'spe', 'Sp5g18180' => 'spa', 'Sp6g12880' => 'spa', 'Sp6g30850' => 'spa', 'Sp7g22960' => 'spa', 'Sp7g34010' => 'spa', 'SpUn1326_0010' => 'spa', 'TAR371G0242' => 'tar', 'TAR622G0638' => 'tar', 'TAR628G1548' => 'tar', 'TAR629G1079' => 'tar', 'TAR629G3413' => 'tar', 'THA.LOC104804249' => 'tha', 'THA.LOC104808315' => 'tha', 'THA.LOC104809238' => 'tha', 'THA.LOC104825484' => 'tha', 'Thecc.01G025500' => 'tca', 'Thecc.03G015800' => 'tca', 'Thecc.03G018000' => 'tca', 'Thecc.03G134800' => 'tca', 'Thecc.04G014700' => 'tca', 'Thhalv10006991m.g' => 'esa', 'Thhalv10012707m.g' => 'esa', 'Thhalv10015739m.g' => 'esa', 'Thhalv10024553m.g' => 'esa', 'Thhalv10024673m.g' => 'esa', 'Thhalv10029187m.g' => 'esa', 'TPR.G12971' => 'tpr', 'TPR.G29396' => 'tpr', 'TPR.G33376' => 'tpr', 'TPR.G35508' => 'tpr', 'TPR.G35516' => 'tpr', 'TPR.G37317' => 'tpr', 'TPR.G37389' => 'tpr', 'TPR.G37523' => 'tpr', 'TPR.G559' => 'tpr', 'TWI14G0070' => 'twi', 'TWI14G0729' => 'twi', 'TWI18G0596' => 'twi', 'TWI39G0780' => 'twi', 'TWI39G0850' => 'twi', 'TWI73G1052' => 'twi', 'unitig_52.g17485' => 'ugi', 'unitig_61.g26355' => 'ugi', 'vmacro01040' => 'vma', 'vmacro16731' => 'vma', 'vmacro18270' => 'vma', 'vmacro19142' => 'vma', 'vmacro19407' => 'vma', 'vmacro19408' => 'vma', 'vmacro21899' => 'vma', 'vmacro21900' => 'vma', 'vmacro21901' => 'vma', 'VMungo0251G0490' => 'vmu', 'VMungo0251G1748' => 'vmu', 'VMungo1309G0421' => 'vmu', 'Zm00001eb086500' => 'zma', 'Zm00001eb150680' => 'zma', 'Zm00001eb162330' => 'zma', 'Zm00001eb203130' => 'zma', 'Zm00001eb369480' => 'zma', 'Zm00001eb382340' => 'zma', 'Zm00001eb416360' => 'zma' ) $gf_id = 'HOM05D000902' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000902' ) $data_identifier = 'HOM05D000902' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 13, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 10, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 6, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 9, 'hma' => (int) 12, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 4, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 6, 'ppa' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 6, 'rch' => (int) 9, 'rsi' => (int) 9, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 12, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 3, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416360' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000902', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '663', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02470' => 'bna', 'A01p16260' => 'bna', 'A02p01680' => 'bna', 'A03p16600' => 'bna', 'A03p55660' => 'bna', 'A03p64160' => 'bna', 'A03p64170' => 'bna', 'A08p31900' => 'bna', 'A09p59530' => 'bna', 'A10p08230' => 'bna', 'A10p25090' => 'bna', 'Aa31LG3G7100' => 'aar', 'Aa31LG3G7110' => 'aar', 'Aa31LG6G13160' => 'aar', 'Aa31LG7G10770' => 'aar', 'Aa31LG7G3830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2723' => 'aag', 'Actinidia08045' => 'ach', 'Actinidia08888' => 'ach', 'Actinidia18333' => 'ach', 'Actinidia19334' => 'ach', 'Actinidia25552' => 'ach', 'Actinidia26089' => 'ach', 'Actinidia30615' => 'ach', 'Actinidia30616' => 'ach', 'Actinidia33083' => 'ach', 'Actinidia35762' => 'ach', 'Ah.02g110620' => 'amhyb', 'Ah.11g046390' => 'amhyb', 'AL1G31670' => 'aly', 'AL6G23730' => 'aly', 'AL7G14740' => 'aly', 'AL7G14750' => 'aly', 'AL7G14760' => 'aly', 'AL7G28220' => 'aly', 'AL8G24940' => 'aly', 'Aqoxy3G01665' => 'aox', 'Aqoxy3G02853' => 'aox', 'Aqoxy5G01513' => 'aox', 'Aqoxy5G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8SKA4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ75LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKDA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0LJZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7REX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZP4YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWX7I5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2QKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS0L9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPCD8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q161UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC7XCF' => 'arhy', 'AT1G19100' => 'ath', 'AT4G24970' => 'ath', 'AT4G36270' => 'ath', 'AT4G36280' => 'ath', 'AT4G36290' => 'ath', 'AT5G13130' => 'ath', 'AT5G50780' => 'ath', 'ATR0582G266' => 'atr', 'ATR0661G195' => 'atr', 'ATR1152G031' => 'atr', 'Atru.chr11.2382' => 'acertr', 'Atru.chr12.2337' => 'acertr', 'Atru.chr3.744' => 'acertr', 'Atru.chr6.1870' => 'acertr', 'Atru.chr9.2515' => 'acertr', 'AUR62004120' => 'cqu', 'AUR62005667' => 'cqu', 'AUR62007634' => 'cqu', 'AUR62008186' => 'cqu', 'AUR62008187' => 'cqu', 'AUR62008188' => 'cqu', 'AUR62027954' => 'cqu', 'AUR62028766' => 'cqu', 'AUR62028767' => 'cqu', 'AUR62028768' => 'cqu', 'AUR62028886' => 'cqu', 'AUR62029563' => 'cqu', 'AUR62038832' => 'cqu', 'BcaB01g04149' => 'bca', 'BcaB03g12940' => 'bca', 'BcaB03g13090' => 'bca', 'BcaB03g14466' => 'bca', 'BcaB05g24035' => 'bca', 'BcaC01g06050' => 'bca', 'BcaC04g19148' => 'bca', 'BcaC04g20761' => 'bca', 'BcaC06g32845' => 'bca', 'BcaC07g41274' => 'bca', 'BcaC09g50827' => 'bca', 'BcaNung00741' => 'bca', 'BcaNung00742' => 'bca', 'BcaNung01859' => 'bca', 'BcaNung03985' => 'bca', 'BcaNung03989' => 'bca', 'BcaNung05661' => 'bca', 'BolC1t00257H' => 'bol', 'BolC1t01956H' => 'bol', 'BolC2t06534H' => 'bol', 'BolC3t14334H' => 'bol', 'BolC5t30451H' => 'bol', 'BolC7t45880H' => 'bol', 'BolC7t46586H' => 'bol', 'BolC8t49301H' => 'bol', 'BolC8t51837H' => 'bol', 'BolC9t56822H' => 'bol', 'BolC9t59235H' => 'bol', 'BraA01t00234Z' => 'bra', 'BraA01t01563Z' => 'bra', 'BraA02t05147Z' => 'bra', 'BraA03t10947Z' => 'bra', 'BraA03t14633Z' => 'bra', 'BraA08t35112Z' => 'bra', 'BraA09t41330Z' => 'bra', 'BraA10t44570Z' => 'bra', 'C01p02670' => 'bna', 'C01p20260' => 'bna', 'C02p05890' => 'bna', 'C03p19530' => 'bna', 'C05p17470' => 'bna', 'C07p53900' => 'bna', 'C07p61630' => 'bna', 'C08p16800' => 'bna', 'C08p42810' => 'bna', 'C09p39480' => 'bna', 'C09p63980' => 'bna', 'CAN.G1001.7' => 'can', 'CAN.G1034.55' => 'can', 'CAN.G143.7' => 'can', 'CAN.G3340.1' => 'can', 'CAN.G358.19' => 'can', 'CAN.G373.2' => 'can', 'CAN.G674.16' => 'can', 'CAN.G674.17' => 'can', 'CAN.G674.18' => 'can', 'CAN.G732.2' => 'can', 'CAN.G732.3' => 'can', 'CAN.G993.39' => 'can', 'CANSAT01G2052' => 'cansat', 'CANSAT80G0070' => 'cansat', 'CANSAT80G0483' => 'cansat', 'CANSAT80G0625' => 'cansat', 'CARHR019690' => 'chi', 'CARHR080280' => 'chi', 'CARHR152750' => 'chi', 'CARHR152760' => 'chi', 'CARHR152770' => 'chi', 'CARHR200340' => 'chi', 'CARHR232370' => 'chi', 'CARHR244670' => 'chi', 'CARHR244680' => 'chi', 'CARHR257520' => 'chi', 'Carub.0001s1872' => 'cru', 'Carub.0006s1130' => 'cru', 'Carub.0007s0396' => 'cru', 'Carub.0007s0397' => 'cru', 'Carub.0007s1608' => 'cru', 'Carub.0008s1068' => 'cru', 'Carub.0008s1077' => 'cru', 'Ca_16158_v3' => 'car', 'Ca_17571_v3' => 'car', 'Ca_21936_v3' => 'car', 'Ca_22350_v3' => 'car', 'CBR_g22445' => 'cbr', 'CBR_g26290' => 'cbr', 'Cc04_g09610' => 'ccan', 'Cc04_g12280' => 'ccan', 'Cc07_g10230' => 'ccan', 'CDE02G0093' => 'cde', 'CDE02G0701' => 'cde', 'CDE04G1050' => 'cde', 'CDE05G1833' => 'cde', 'CDE05G3058' => 'cde', 'CDE05G3380' => 'cde', 'CDE06G0536' => 'cde', 'Cfa006923' => 'cfa', 'Cfa009402' => 'cfa', 'Cfa018751' => 'cfa', 'Cfa019164' => 'cfa', 'Cfa022935' => 'cfa', 'Ciclev10019081m.g' => 'ccl', 'Ciclev10025076m.g' => 'ccl', 'Ciclev10030712m.g' => 'ccl', 'Ciclev10033760m.g' => 'ccl', 'CiPaw.05G105600' => 'cil', 'CiPaw.08G136700' => 'cil', 'CiPaw.11G003900' => 'cil', 'CiPaw.11G023700' => 'cil', 'CiPaw.12G003700' => 'cil', 'ClCG06G017100' => 'cla', 'ClCG06G018110' => 'cla', 'ClCG07G008800' => 'cla', 'ClCG07G015330' => 'cla', 'COL.COLO4_13698' => 'col', 'COL.COLO4_16659' => 'col', 'COL.COLO4_21986' => 'col', 'COL.COLO4_24049' => 'col', 'COL.COLO4_29061' => 'col', 'COL.COLO4_29075' => 'col', 'COL.COLO4_30094' => 'col', 'Cpa.g.c33689' => 'cpa', 'Cpa.g.sc108.39' => 'cpa', 'Cpa.g.sc108.41' => 'cpa', 'Cpa.g.sc1163.1' => 'cpa', 'Cpa.g.sc4.155' => 'cpa', 'Cpa.g.sc6.194' => 'cpa', 'CsaV3_1G000340' => 'csa', 'CsaV3_1G001400' => 'csa', 'CsaV3_4G002220' => 'csa', 'CsaV3_4G005370' => 'csa', 'CSS0007487' => 'camsi', 'CSS0008066' => 'camsi', 'CSS0009120' => 'camsi', 'CSS0015512' => 'camsi', 'CSS0022409' => 'camsi', 'CSS0025358' => 'camsi', 'CSS0044547' => 'camsi', 'DCAR_013057' => 'dca', 'DCAR_015058' => 'dca', 'DCAR_016027' => 'dca', 'DCAR_017327' => 'dca', 'DCAR_020743' => 'dca', 'DCAR_026157' => 'dca', 'DCAR_032339' => 'dca', 'DCAR_032340' => 'dca', 'Dinv11200' => 'din', 'Dinv11201' => 'din', 'Dinv20631' => 'din', 'Dinv23182' => 'din', 'Dinv33466' => 'din', 'Dinv33583' => 'din', 'Dinv38565' => 'din', 'Duzib068G0200' => 'dzi', 'Duzib147G0132' => 'dzi', 'Duzib147G0635' => 'dzi', 'Duzib205G1670' => 'dzi', 'Duzib251G0606' => 'dzi', 'ECA232G3336' => 'eca', 'ECA232G3763' => 'eca', 'ECA232G4845' => 'eca', 'ECA234G1607' => 'eca', 'ECA246G0932' => 'eca', 'ECA247G0781' => 'eca', 'ECA247G1932' => 'eca', 'ECA247G2079' => 'eca', 'ECA247G3338' => 'eca', 'ECA247G4115' => 'eca', 'EL10Ac3g06552' => 'bvu', 'EL10Ac5g10721' => 'bvu', 'EL10Ac5g10722' => 'bvu', 'EL10Ac5g10723' => 'bvu', 'EL10Ac5g11361' => 'bvu', 'EL10Ac6g13553' => 'bvu', 'EL10As8g23872' => 'bvu', 'Eucgr.B00250' => 'egr', 'Eucgr.B00251' => 'egr', 'Eucgr.B03533' => 'egr', 'Eucgr.I02381' => 'egr', 'Eucgr.K02700' => 'egr', 'FAN02G0174' => 'fan', 'FAN02G3146' => 'fan', 'FAN04G1672' => 'fan', 'FAN04G2273' => 'fan', 'FAN05G2791' => 'fan', 'FAN05G4035' => 'fan', 'FAN07G0834' => 'fan', 'FAN08G1198' => 'fan', 'FAN09G4182' => 'fan', 'FAN12G0496' => 'fan', 'FAN13G1027' => 'fan', 'FAN13G2951' => 'fan', 'FAN14G0705' => 'fan', 'FAN14G0720' => 'fan', 'FAN17G0201' => 'fan', 'FAN17G2665' => 'fan', 'FAN18G1456' => 'fan', 'FAN18G1525' => 'fan', 'FAN18G3500' => 'fan', 'FAN28G2670' => 'fan', 'FvH4_1g12391' => 'fve', 'FvH4_4g23220' => 'fve', 'FvH4_5g08810' => 'fve', 'FvH4_5g28960' => 'fve', 'FvH4_6g42820' => 'fve', 'FvH4_6g51110' => 'fve', 'Glyma.02G051802' => 'gma', 'Glyma.04G185300' => 'gma', 'Glyma.05G202900' => 'gma', 'Glyma.08G010300' => 'gma', 'Glyma.16G131900' => 'gma', 'Glyma.17G087900' => 'gma', 'Gohir.A07G048600' => 'ghi', 'Gohir.A11G179000' => 'ghi', 'Gohir.A12G140900' => 'ghi', 'Gohir.A12G140950' => 'ghi', 'Gohir.A12G191700' => 'ghi', 'Gohir.A13G086300' => 'ghi', 'Gohir.D07G052900' => 'ghi', 'Gohir.D11G186600' => 'ghi', 'Gohir.D12G145575' => 'ghi', 'Gohir.D12G145650' => 'ghi', 'Gohir.D12G145725' => 'ghi', 'Gohir.D12G194050' => 'ghi', 'Gohir.D13G091800' => 'ghi', 'Gorai.001G055900' => 'gra', 'Gorai.007G198400' => 'gra', 'Gorai.008G157000' => 'gra', 'Gorai.008G157100' => 'gra', 'Gorai.008G208700' => 'gra', 'Gorai.010G138700' => 'gra', 'GSVIVG01000977001' => 'vvi', 'GSVIVG01007708001' => 'vvi', 'GSVIVG01008587001' => 'vvi', 'GSVIVG01018849001' => 'vvi', 'GSVIVG01032432001' => 'vvi', 'HanXRQChr02g0034131' => 'han', 'HanXRQChr02g0035981' => 'han', 'HanXRQChr02g0035991' => 'han', 'HanXRQChr05g0155611' => 'han', 'HanXRQChr05g0155621' => 'han', 'HanXRQChr08g0236501' => 'han', 'HanXRQChr09g0261321' => 'han', 'HanXRQChr09g0272081' => 'han', 'HanXRQChr10g0310741' => 'han', 'HanXRQChr11g0325591' => 'han', 'HanXRQChr12g0385691' => 'han', 'HanXRQChr13g0387801' => 'han', 'HanXRQChr15g0463011' => 'han', 'Haze_03826' => 'cav', 'Haze_03827' => 'cav', 'Haze_07183' => 'cav', 'Haze_07537' => 'cav', 'Haze_07539' => 'cav', 'Haze_12461' => 'cav', 'Haze_16115' => 'cav', 'Haze_16808' => 'cav', 'Haze_18531' => 'cav', 'Hma1.2p1_0046F.1_g026700' => 'hma', 'Hma1.2p1_0046F.1_g026710' => 'hma', 'Hma1.2p1_0168F.1_g074340' => 'hma', 'Hma1.2p1_0266F.1_g107030' => 'hma', 'Hma1.2p1_0266F.1_g107060' => 'hma', 'Hma1.2p1_0275F.1_g110510' => 'hma', 'Hma1.2p1_0592F.1_g185490' => 'hma', 'Hma1.2p1_0592F.1_g185500' => 'hma', 'Hma1.2p1_0592F.1_g185510' => 'hma', 'Hma1.2p1_0592F.1_g185520' => 'hma', 'Hma1.2p1_0592F.1_g185530' => 'hma', 'Hma1.2p1_0818F.1_g223450' => 'hma', 'HPP92_009708' => 'vpl', 'HPP92_009793' => 'vpl', 'HPP92_009796' => 'vpl', 'HPP92_009797' => 'vpl', 'HPP92_014940' => 'vpl', 'HPP92_014988' => 'vpl', 'Hund02463' => 'sun', 'Hund02760' => 'sun', 'Hund05071' => 'sun', 'Hund10108' => 'sun', 'Hund11204' => 'sun', 'Hund14016' => 'sun', 'Hund16464' => 'sun', 'Lalb_Chr09g0333391' => 'lal', 'Lalb_Chr11g0070461' => 'lal', 'Lalb_Chr12g0201671' => 'lal', 'Lalb_Chr13g0297161' => 'lal', 'Lj1g0002823' => 'lja', 'Lj3C1074T6' => 'lonja', 'Lj4A212T28' => 'lonja', 'Lj4g0005516' => 'lja', 'Lj4g0013705' => 'lja', 'Lj4g0027865' => 'lja', 'Lj5C92G16' => 'lonja', 'Lj5C92T12' => 'lonja', 'Lj7C596T3' => 'lonja', 'Lj9A446G59' => 'lonja', 'Lj9A482G21' => 'lonja', 'Lsat_1_v5_gn_1_28261' => 'lsa', 'Lsat_1_v5_gn_1_28281' => 'lsa', 'Lsat_1_v5_gn_1_32721' => 'lsa', 'Lsat_1_v5_gn_4_151760' => 'lsa', 'Lsat_1_v5_gn_4_2120' => 'lsa', 'Lsat_1_v5_gn_4_75761' => 'lsa', 'Lsat_1_v5_gn_5_10920' => 'lsa', 'Manes.02G099900' => 'mes', 'Manes.11G096200' => 'mes', 'Manes.12G007200' => 'mes', 'Manes.14G048300' => 'mes', 'Manes.17G114700' => 'mes', 'Mapoly0002s0070' => 'mpo', 'Mapoly0029s0099' => 'mpo', 'MBI07_g24742_MAGBIO' => 'mbi', 'MBI10_g27988_MAGBIO' => 'mbi', 'MBI11_g13057_MAGBIO' => 'mbi', 'MD02G1137200' => 'mdo', 'MD06G1137200' => 'mdo', 'MD07G1122300' => 'mdo', 'MD09G1078200' => 'mdo', 'MD13G1123700' => 'mdo', 'MD14G1151900' => 'mdo', 'MD17G1030900' => 'mdo', 'MD17G1068200' => 'mdo', 'MD17G1068600' => 'mdo', 'Medtr3g077540' => 'mtr', 'Medtr4g105530' => 'mtr', 'Medtr8g076580' => 'mtr', 'Medtr8g076590' => 'mtr', 'Medtr8g096410' => 'mtr', 'MELO3C016411.2' => 'cme', 'MELO3C017780.2' => 'cme', 'MELO3C022560.2' => 'cme', 'MELO3C026187.2' => 'cme', 'MELO3C026286.2' => 'cme', 'MELO3C032854.2' => 'cme', 'Migut.H02495' => 'egut', 'Migut.I00561' => 'egut', 'Migut.K01015' => 'egut', 'Migut.K01016' => 'egut', 'Migut.L00743' => 'egut', 'Migut.L00744' => 'egut', 'Migut.L00746' => 'egut', 'Migut.L00798' => 'egut', 'Migut.L00799' => 'egut', 'Migut.N02096' => 'egut', 'MSTRG.11259' => 'ama', 'MSTRG.23142' => 'ama', 'MSTRG.2499' => 'ama', 'Nitab4.5_0000003g0730' => 'nta', 'Nitab4.5_0000137g0020' => 'nta', 'Nitab4.5_0000721g0210' => 'nta', 'Nitab4.5_0000723g0050' => 'nta', 'Nitab4.5_0000913g0070' => 'nta', 'Nitab4.5_0001332g0040' => 'nta', 'Nitab4.5_0001771g0050' => 'nta', 'Nitab4.5_0001918g0050' => 'nta', 'Nitab4.5_0002686g0030' => 'nta', 'Nitab4.5_0003156g0020' => 'nta', 'Nitab4.5_0003383g0040' => 'nta', 'Nitab4.5_0003918g0010' => 'nta', 'Nitab4.5_0006760g0010' => 'nta', 'Nn1g05981' => 'nnu', 'Nn1g06288' => 'nnu', 'Nn3g16371' => 'nnu', 'Nn3g16786' => 'nnu', 'Nn4g22232' => 'nnu', 'Oeu005144.1' => 'oeu', 'Oeu005145.1' => 'oeu', 'Oeu011348.1' => 'oeu', 'Oeu016415.1' => 'oeu', 'Oeu023501.1' => 'oeu', 'Oeu044473.1' => 'oeu', 'Oeu048892.2' => 'oeu', 'Os01g0549200' => 'osa', 'Os02g0469300' => 'osa', 'Os04g0311100' => 'osa', 'Os06g0474900' => 'osa', 'Os10g0181700' => 'osa', 'Os11g0454800' => 'osa', 'Peaxi162Scf00037g00714' => 'pax', 'Peaxi162Scf00084g01217' => 'pax', 'Peaxi162Scf00257g00217' => 'pax', 'Peaxi162Scf00516g00215' => 'pax', 'Peaxi162Scf00689g00123' => 'pax', 'PGR044G2719' => 'pgr', 'PGR083G1360' => 'pgr', 'PGR102G2849' => 'pgr', 'PGR119G2534' => 'pgr', 'PGSC0003DMG400003538' => 'stu', 'PGSC0003DMG400028138' => 'stu', 'PGSC0003DMG400031732' => 'stu', 'PGSC0003DMG400038165' => 'stu', 'Phvul.002G284600' => 'pvu', 'Phvul.003G258200' => 'pvu', 'Phvul.009G176500' => 'pvu', 'Potri.003G167201' => 'ptr', 'Potri.005G118400' => 'ptr', 'Potri.012G089000' => 'ptr', 'Potri.012G102800' => 'ptr', 'Potri.015G079400' => 'ptr', 'Potri.015G100900' => 'ptr', 'Pp3c14_9810' => 'ppa', 'Pp3c15_10450' => 'ppa', 'Pp3c20_19150' => 'ppa', 'Pp3c23_12740' => 'ppa', 'Pp3c23_6310' => 'ppa', 'Pp3c24_3720' => 'ppa', 'Pp3c27_2580' => 'ppa', 'Pp3c9_8990' => 'ppa', 'PRCOL_00002854' => 'pco', 'Prupe.1G221200' => 'ppe', 'Prupe.3G289000' => 'ppe', 'Prupe.5G147000' => 'ppe', 'Prupe.6G157300' => 'ppe', 'Prupe.7G163400' => 'ppe', 'Psat0s2177g0040' => 'psa', 'Psat3g174760' => 'psa', 'Psat3g192160' => 'psa', 'Psat4g058520' => 'psa', 'Psat4g096840' => 'psa', 'Psat7g037320' => 'psa', 'PSO017G1274' => 'pso', 'PSO017G5166' => 'pso', 'PSO063G4558' => 'pso', 'PSO170G4458' => 'pso', 'PSO170G5005' => 'pso', 'PSO210G6156' => 'pso', 'PSO210G6635' => 'pso', 'PSO210G7397' => 'pso', 'PSO210G7700' => 'pso', 'PSO455G0035' => 'pso', 'PSO455G0180' => 'pso', 'PSO478G4515' => 'pso', 'PSO832G1305' => 'pso', 'PSO832G3489' => 'pso', 'QL02p075247' => 'qlo', 'QL03p051148' => 'qlo', 'QL05p010313' => 'qlo', 'QL06p034627' => 'qlo', 'QL10p001889' => 'qlo', 'QL10p010846' => 'qlo', 'RcHm_v2.0_Chr1g0350621' => 'rch', 'RcHm_v2.0_Chr1g0350641' => 'rch', 'RcHm_v2.0_Chr2g0092891' => 'rch', 'RcHm_v2.0_Chr2g0100251' => 'rch', 'RcHm_v2.0_Chr2g0158661' => 'rch', 'RcHm_v2.0_Chr2g0172741' => 'rch', 'RcHm_v2.0_Chr4g0429571' => 'rch', 'RcHm_v2.0_Chr5g0042471' => 'rch', 'RcHm_v2.0_Chr7g0189451' => 'rch', 'Rhsim08G0052000' => 'rsi', 'Rhsim08G0174400' => 'rsi', 'Rhsim08G0193200' => 'rsi', 'Rhsim10G0214800' => 'rsi', 'Rhsim10G0214900' => 'rsi', 'Rhsim10G0215000' => 'rsi', 'Rhsim12G0022900' => 'rsi', 'Rhsim12G0177500' => 'rsi', 'Rhsim12G0177700' => 'rsi', 'Sabra03G0122600' => 'sbr', 'Sabra05G0097400' => 'sbr', 'Sabra12G0064100' => 'sbr', 'Sabra15G0121300' => 'sbr', 'SalBow2G0642' => 'sbo', 'SalBow5G2667' => 'sbo', 'SalBow5G4873' => 'sbo', 'SalBow8G2395' => 'sbo', 'Sc03g0003290' => 'sci', 'Sc10g0010130' => 'sci', 'Sc22g0003650' => 'sci', 'Sed0001603' => 'sed', 'Sed0004259' => 'sed', 'Sed0006789' => 'sed', 'Sed0011838' => 'sed', 'Sed0012964' => 'sed', 'Sed0016383' => 'sed', 'Sed0019010' => 'sed', 'Sed0020188' => 'sed', 'SEGI_04702' => 'sgi', 'SEGI_17231' => 'sgi', 'SEGI_18877' => 'sgi', 'SEGI_25196' => 'sgi', 'SEGI_25515' => 'sgi', 'SEGI_28445' => 'sgi', 'SEGI_37452' => 'sgi', 'SGA_v2.0_scaffold188G40336' => 'sas', 'SGA_v2.0_scaffold228G43247' => 'sas', 'SGA_v2.0_scaffold280G46853' => 'sas', 'SGA_v2.0_scaffold34G13808' => 'sas', 'SGA_v2.0_scaffold40G15576' => 'sas', 'SGA_v2.0_scaffold611G53188' => 'sas', 'SGA_v2.0_scaffold78G25461' => 'sas', 'SGA_v2.0_scaffold90G27888' => 'sas', 'SHI08601' => 'shi', 'SHI08606' => 'shi', 'SHI17117' => 'shi', 'SHI17119' => 'shi', 'SMO118G0201' => 'smo', 'SMO169G0247' => 'smo', 'SMO176G0006' => 'smo', 'SMO176G0015' => 'smo', 'SMO202G0006' => 'smo', 'SMO240G0050' => 'smo', 'SMO286G0009' => 'smo', 'SMO338G0033' => 'smo', 'SMO356G0533' => 'smo', 'SMO364G0382' => 'smo', 'SMO367G0166' => 'smo', 'SMO367G1098' => 'smo', 'Solyc01g009920.3' => 'sly', 'Solyc01g099300.3' => 'sly', 'Solyc02g084700.3' => 'sly', 'Solyc03g097520.3' => 'sly', 'Solyc06g071580.3' => 'sly', 'Solyc10g081760.3' => 'sly', 'Sopen01g005480' => 'spe', 'Sopen01g042850' => 'spe', 'Sopen02g029370' => 'spe', 'Sopen03g028280' => 'spe', 'Sopen06g027870' => 'spe', 'Sopen10g032270' => 'spe', 'Sp5g18180' => 'spa', 'Sp6g12880' => 'spa', 'Sp6g30850' => 'spa', 'Sp7g22960' => 'spa', 'Sp7g34010' => 'spa', 'SpUn1326_0010' => 'spa', 'TAR371G0242' => 'tar', 'TAR622G0638' => 'tar', 'TAR628G1548' => 'tar', 'TAR629G1079' => 'tar', 'TAR629G3413' => 'tar', 'THA.LOC104804249' => 'tha', 'THA.LOC104808315' => 'tha', 'THA.LOC104809238' => 'tha', 'THA.LOC104825484' => 'tha', 'Thecc.01G025500' => 'tca', 'Thecc.03G015800' => 'tca', 'Thecc.03G018000' => 'tca', 'Thecc.03G134800' => 'tca', 'Thecc.04G014700' => 'tca', 'Thhalv10006991m.g' => 'esa', 'Thhalv10012707m.g' => 'esa', 'Thhalv10015739m.g' => 'esa', 'Thhalv10024553m.g' => 'esa', 'Thhalv10024673m.g' => 'esa', 'Thhalv10029187m.g' => 'esa', 'TPR.G12971' => 'tpr', 'TPR.G29396' => 'tpr', 'TPR.G33376' => 'tpr', 'TPR.G35508' => 'tpr', 'TPR.G35516' => 'tpr', 'TPR.G37317' => 'tpr', 'TPR.G37389' => 'tpr', 'TPR.G37523' => 'tpr', 'TPR.G559' => 'tpr', 'TWI14G0070' => 'twi', 'TWI14G0729' => 'twi', 'TWI18G0596' => 'twi', 'TWI39G0780' => 'twi', 'TWI39G0850' => 'twi', 'TWI73G1052' => 'twi', 'unitig_52.g17485' => 'ugi', 'unitig_61.g26355' => 'ugi', 'vmacro01040' => 'vma', 'vmacro16731' => 'vma', 'vmacro18270' => 'vma', 'vmacro19142' => 'vma', 'vmacro19407' => 'vma', 'vmacro19408' => 'vma', 'vmacro21899' => 'vma', 'vmacro21900' => 'vma', 'vmacro21901' => 'vma', 'VMungo0251G0490' => 'vmu', 'VMungo0251G1748' => 'vmu', 'VMungo1309G0421' => 'vmu', 'Zm00001eb086500' => 'zma', 'Zm00001eb150680' => 'zma', 'Zm00001eb162330' => 'zma', 'Zm00001eb203130' => 'zma', 'Zm00001eb369480' => 'zma', 'Zm00001eb382340' => 'zma', 'Zm00001eb416360' => 'zma' ), 'gf_id' => 'HOM05D000902', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000902' ), 'data_identifier' => 'HOM05D000902', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000902', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '663', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02470' => 'bna', 'A01p16260' => 'bna', 'A02p01680' => 'bna', 'A03p16600' => 'bna', 'A03p55660' => 'bna', 'A03p64160' => 'bna', 'A03p64170' => 'bna', 'A08p31900' => 'bna', 'A09p59530' => 'bna', 'A10p08230' => 'bna', 'A10p25090' => 'bna', 'Aa31LG3G7100' => 'aar', 'Aa31LG3G7110' => 'aar', 'Aa31LG6G13160' => 'aar', 'Aa31LG7G10770' => 'aar', 'Aa31LG7G3830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2723' => 'aag', 'Actinidia08045' => 'ach', 'Actinidia08888' => 'ach', 'Actinidia18333' => 'ach', 'Actinidia19334' => 'ach', 'Actinidia25552' => 'ach', 'Actinidia26089' => 'ach', 'Actinidia30615' => 'ach', 'Actinidia30616' => 'ach', 'Actinidia33083' => 'ach', 'Actinidia35762' => 'ach', 'Ah.02g110620' => 'amhyb', 'Ah.11g046390' => 'amhyb', 'AL1G31670' => 'aly', 'AL6G23730' => 'aly', 'AL7G14740' => 'aly', 'AL7G14750' => 'aly', 'AL7G14760' => 'aly', 'AL7G28220' => 'aly', 'AL8G24940' => 'aly', 'Aqoxy3G01665' => 'aox', 'Aqoxy3G02853' => 'aox', 'Aqoxy5G01513' => 'aox', 'Aqoxy5G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8SKA4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ75LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKDA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0LJZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7REX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZP4YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWX7I5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2QKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS0L9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPCD8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q161UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC7XCF' => 'arhy', 'AT1G19100' => 'ath', 'AT4G24970' => 'ath', 'AT4G36270' => 'ath', 'AT4G36280' => 'ath', 'AT4G36290' => 'ath', 'AT5G13130' => 'ath', 'AT5G50780' => 'ath', 'ATR0582G266' => 'atr', 'ATR0661G195' => 'atr', 'ATR1152G031' => 'atr', 'Atru.chr11.2382' => 'acertr', 'Atru.chr12.2337' => 'acertr', 'Atru.chr3.744' => 'acertr', 'Atru.chr6.1870' => 'acertr', 'Atru.chr9.2515' => 'acertr', 'AUR62004120' => 'cqu', 'AUR62005667' => 'cqu', 'AUR62007634' => 'cqu', 'AUR62008186' => 'cqu', 'AUR62008187' => 'cqu', 'AUR62008188' => 'cqu', 'AUR62027954' => 'cqu', 'AUR62028766' => 'cqu', 'AUR62028767' => 'cqu', 'AUR62028768' => 'cqu', 'AUR62028886' => 'cqu', 'AUR62029563' => 'cqu', 'AUR62038832' => 'cqu', 'BcaB01g04149' => 'bca', 'BcaB03g12940' => 'bca', 'BcaB03g13090' => 'bca', 'BcaB03g14466' => 'bca', 'BcaB05g24035' => 'bca', 'BcaC01g06050' => 'bca', 'BcaC04g19148' => 'bca', 'BcaC04g20761' => 'bca', 'BcaC06g32845' => 'bca', 'BcaC07g41274' => 'bca', 'BcaC09g50827' => 'bca', 'BcaNung00741' => 'bca', 'BcaNung00742' => 'bca', 'BcaNung01859' => 'bca', 'BcaNung03985' => 'bca', 'BcaNung03989' => 'bca', 'BcaNung05661' => 'bca', 'BolC1t00257H' => 'bol', 'BolC1t01956H' => 'bol', 'BolC2t06534H' => 'bol', 'BolC3t14334H' => 'bol', 'BolC5t30451H' => 'bol', 'BolC7t45880H' => 'bol', 'BolC7t46586H' => 'bol', 'BolC8t49301H' => 'bol', 'BolC8t51837H' => 'bol', 'BolC9t56822H' => 'bol', 'BolC9t59235H' => 'bol', 'BraA01t00234Z' => 'bra', 'BraA01t01563Z' => 'bra', 'BraA02t05147Z' => 'bra', 'BraA03t10947Z' => 'bra', 'BraA03t14633Z' => 'bra', 'BraA08t35112Z' => 'bra', 'BraA09t41330Z' => 'bra', 'BraA10t44570Z' => 'bra', 'C01p02670' => 'bna', 'C01p20260' => 'bna', 'C02p05890' => 'bna', 'C03p19530' => 'bna', 'C05p17470' => 'bna', 'C07p53900' => 'bna', 'C07p61630' => 'bna', 'C08p16800' => 'bna', 'C08p42810' => 'bna', 'C09p39480' => 'bna', 'C09p63980' => 'bna', 'CAN.G1001.7' => 'can', 'CAN.G1034.55' => 'can', 'CAN.G143.7' => 'can', 'CAN.G3340.1' => 'can', 'CAN.G358.19' => 'can', 'CAN.G373.2' => 'can', 'CAN.G674.16' => 'can', 'CAN.G674.17' => 'can', 'CAN.G674.18' => 'can', 'CAN.G732.2' => 'can', 'CAN.G732.3' => 'can', 'CAN.G993.39' => 'can', 'CANSAT01G2052' => 'cansat', 'CANSAT80G0070' => 'cansat', 'CANSAT80G0483' => 'cansat', 'CANSAT80G0625' => 'cansat', 'CARHR019690' => 'chi', 'CARHR080280' => 'chi', 'CARHR152750' => 'chi', 'CARHR152760' => 'chi', 'CARHR152770' => 'chi', 'CARHR200340' => 'chi', 'CARHR232370' => 'chi', 'CARHR244670' => 'chi', 'CARHR244680' => 'chi', 'CARHR257520' => 'chi', 'Carub.0001s1872' => 'cru', 'Carub.0006s1130' => 'cru', 'Carub.0007s0396' => 'cru', 'Carub.0007s0397' => 'cru', 'Carub.0007s1608' => 'cru', 'Carub.0008s1068' => 'cru', 'Carub.0008s1077' => 'cru', 'Ca_16158_v3' => 'car', 'Ca_17571_v3' => 'car', 'Ca_21936_v3' => 'car', 'Ca_22350_v3' => 'car', 'CBR_g22445' => 'cbr', 'CBR_g26290' => 'cbr', 'Cc04_g09610' => 'ccan', 'Cc04_g12280' => 'ccan', 'Cc07_g10230' => 'ccan', 'CDE02G0093' => 'cde', 'CDE02G0701' => 'cde', 'CDE04G1050' => 'cde', 'CDE05G1833' => 'cde', 'CDE05G3058' => 'cde', 'CDE05G3380' => 'cde', 'CDE06G0536' => 'cde', 'Cfa006923' => 'cfa', 'Cfa009402' => 'cfa', 'Cfa018751' => 'cfa', 'Cfa019164' => 'cfa', 'Cfa022935' => 'cfa', 'Ciclev10019081m.g' => 'ccl', 'Ciclev10025076m.g' => 'ccl', 'Ciclev10030712m.g' => 'ccl', 'Ciclev10033760m.g' => 'ccl', 'CiPaw.05G105600' => 'cil', 'CiPaw.08G136700' => 'cil', 'CiPaw.11G003900' => 'cil', 'CiPaw.11G023700' => 'cil', 'CiPaw.12G003700' => 'cil', 'ClCG06G017100' => 'cla', 'ClCG06G018110' => 'cla', 'ClCG07G008800' => 'cla', 'ClCG07G015330' => 'cla', 'COL.COLO4_13698' => 'col', 'COL.COLO4_16659' => 'col', 'COL.COLO4_21986' => 'col', 'COL.COLO4_24049' => 'col', 'COL.COLO4_29061' => 'col', 'COL.COLO4_29075' => 'col', 'COL.COLO4_30094' => 'col', 'Cpa.g.c33689' => 'cpa', 'Cpa.g.sc108.39' => 'cpa', 'Cpa.g.sc108.41' => 'cpa', 'Cpa.g.sc1163.1' => 'cpa', 'Cpa.g.sc4.155' => 'cpa', 'Cpa.g.sc6.194' => 'cpa', 'CsaV3_1G000340' => 'csa', 'CsaV3_1G001400' => 'csa', 'CsaV3_4G002220' => 'csa', 'CsaV3_4G005370' => 'csa', 'CSS0007487' => 'camsi', 'CSS0008066' => 'camsi', 'CSS0009120' => 'camsi', 'CSS0015512' => 'camsi', 'CSS0022409' => 'camsi', 'CSS0025358' => 'camsi', 'CSS0044547' => 'camsi', 'DCAR_013057' => 'dca', 'DCAR_015058' => 'dca', 'DCAR_016027' => 'dca', 'DCAR_017327' => 'dca', 'DCAR_020743' => 'dca', 'DCAR_026157' => 'dca', 'DCAR_032339' => 'dca', 'DCAR_032340' => 'dca', 'Dinv11200' => 'din', 'Dinv11201' => 'din', 'Dinv20631' => 'din', 'Dinv23182' => 'din', 'Dinv33466' => 'din', 'Dinv33583' => 'din', 'Dinv38565' => 'din', 'Duzib068G0200' => 'dzi', 'Duzib147G0132' => 'dzi', 'Duzib147G0635' => 'dzi', 'Duzib205G1670' => 'dzi', 'Duzib251G0606' => 'dzi', 'ECA232G3336' => 'eca', 'ECA232G3763' => 'eca', 'ECA232G4845' => 'eca', 'ECA234G1607' => 'eca', 'ECA246G0932' => 'eca', 'ECA247G0781' => 'eca', 'ECA247G1932' => 'eca', 'ECA247G2079' => 'eca', 'ECA247G3338' => 'eca', 'ECA247G4115' => 'eca', 'EL10Ac3g06552' => 'bvu', 'EL10Ac5g10721' => 'bvu', 'EL10Ac5g10722' => 'bvu', 'EL10Ac5g10723' => 'bvu', 'EL10Ac5g11361' => 'bvu', 'EL10Ac6g13553' => 'bvu', 'EL10As8g23872' => 'bvu', 'Eucgr.B00250' => 'egr', 'Eucgr.B00251' => 'egr', 'Eucgr.B03533' => 'egr', 'Eucgr.I02381' => 'egr', 'Eucgr.K02700' => 'egr', 'FAN02G0174' => 'fan', 'FAN02G3146' => 'fan', 'FAN04G1672' => 'fan', 'FAN04G2273' => 'fan', 'FAN05G2791' => 'fan', 'FAN05G4035' => 'fan', 'FAN07G0834' => 'fan', 'FAN08G1198' => 'fan', 'FAN09G4182' => 'fan', 'FAN12G0496' => 'fan', 'FAN13G1027' => 'fan', 'FAN13G2951' => 'fan', 'FAN14G0705' => 'fan', 'FAN14G0720' => 'fan', 'FAN17G0201' => 'fan', 'FAN17G2665' => 'fan', 'FAN18G1456' => 'fan', 'FAN18G1525' => 'fan', 'FAN18G3500' => 'fan', 'FAN28G2670' => 'fan', 'FvH4_1g12391' => 'fve', 'FvH4_4g23220' => 'fve', 'FvH4_5g08810' => 'fve', 'FvH4_5g28960' => 'fve', 'FvH4_6g42820' => 'fve', 'FvH4_6g51110' => 'fve', 'Glyma.02G051802' => 'gma', 'Glyma.04G185300' => 'gma', 'Glyma.05G202900' => 'gma', 'Glyma.08G010300' => 'gma', 'Glyma.16G131900' => 'gma', 'Glyma.17G087900' => 'gma', 'Gohir.A07G048600' => 'ghi', 'Gohir.A11G179000' => 'ghi', 'Gohir.A12G140900' => 'ghi', 'Gohir.A12G140950' => 'ghi', 'Gohir.A12G191700' => 'ghi', 'Gohir.A13G086300' => 'ghi', 'Gohir.D07G052900' => 'ghi', 'Gohir.D11G186600' => 'ghi', 'Gohir.D12G145575' => 'ghi', 'Gohir.D12G145650' => 'ghi', 'Gohir.D12G145725' => 'ghi', 'Gohir.D12G194050' => 'ghi', 'Gohir.D13G091800' => 'ghi', 'Gorai.001G055900' => 'gra', 'Gorai.007G198400' => 'gra', 'Gorai.008G157000' => 'gra', 'Gorai.008G157100' => 'gra', 'Gorai.008G208700' => 'gra', 'Gorai.010G138700' => 'gra', 'GSVIVG01000977001' => 'vvi', 'GSVIVG01007708001' => 'vvi', 'GSVIVG01008587001' => 'vvi', 'GSVIVG01018849001' => 'vvi', 'GSVIVG01032432001' => 'vvi', 'HanXRQChr02g0034131' => 'han', 'HanXRQChr02g0035981' => 'han', 'HanXRQChr02g0035991' => 'han', 'HanXRQChr05g0155611' => 'han', 'HanXRQChr05g0155621' => 'han', 'HanXRQChr08g0236501' => 'han', 'HanXRQChr09g0261321' => 'han', 'HanXRQChr09g0272081' => 'han', 'HanXRQChr10g0310741' => 'han', 'HanXRQChr11g0325591' => 'han', 'HanXRQChr12g0385691' => 'han', 'HanXRQChr13g0387801' => 'han', 'HanXRQChr15g0463011' => 'han', 'Haze_03826' => 'cav', 'Haze_03827' => 'cav', 'Haze_07183' => 'cav', 'Haze_07537' => 'cav', 'Haze_07539' => 'cav', 'Haze_12461' => 'cav', 'Haze_16115' => 'cav', 'Haze_16808' => 'cav', 'Haze_18531' => 'cav', 'Hma1.2p1_0046F.1_g026700' => 'hma', 'Hma1.2p1_0046F.1_g026710' => 'hma', 'Hma1.2p1_0168F.1_g074340' => 'hma', 'Hma1.2p1_0266F.1_g107030' => 'hma', 'Hma1.2p1_0266F.1_g107060' => 'hma', 'Hma1.2p1_0275F.1_g110510' => 'hma', 'Hma1.2p1_0592F.1_g185490' => 'hma', 'Hma1.2p1_0592F.1_g185500' => 'hma', 'Hma1.2p1_0592F.1_g185510' => 'hma', 'Hma1.2p1_0592F.1_g185520' => 'hma', 'Hma1.2p1_0592F.1_g185530' => 'hma', 'Hma1.2p1_0818F.1_g223450' => 'hma', 'HPP92_009708' => 'vpl', 'HPP92_009793' => 'vpl', 'HPP92_009796' => 'vpl', 'HPP92_009797' => 'vpl', 'HPP92_014940' => 'vpl', 'HPP92_014988' => 'vpl', 'Hund02463' => 'sun', 'Hund02760' => 'sun', 'Hund05071' => 'sun', 'Hund10108' => 'sun', 'Hund11204' => 'sun', 'Hund14016' => 'sun', 'Hund16464' => 'sun', 'Lalb_Chr09g0333391' => 'lal', 'Lalb_Chr11g0070461' => 'lal', 'Lalb_Chr12g0201671' => 'lal', 'Lalb_Chr13g0297161' => 'lal', 'Lj1g0002823' => 'lja', 'Lj3C1074T6' => 'lonja', 'Lj4A212T28' => 'lonja', 'Lj4g0005516' => 'lja', 'Lj4g0013705' => 'lja', 'Lj4g0027865' => 'lja', 'Lj5C92G16' => 'lonja', 'Lj5C92T12' => 'lonja', 'Lj7C596T3' => 'lonja', 'Lj9A446G59' => 'lonja', 'Lj9A482G21' => 'lonja', 'Lsat_1_v5_gn_1_28261' => 'lsa', 'Lsat_1_v5_gn_1_28281' => 'lsa', 'Lsat_1_v5_gn_1_32721' => 'lsa', 'Lsat_1_v5_gn_4_151760' => 'lsa', 'Lsat_1_v5_gn_4_2120' => 'lsa', 'Lsat_1_v5_gn_4_75761' => 'lsa', 'Lsat_1_v5_gn_5_10920' => 'lsa', 'Manes.02G099900' => 'mes', 'Manes.11G096200' => 'mes', 'Manes.12G007200' => 'mes', 'Manes.14G048300' => 'mes', 'Manes.17G114700' => 'mes', 'Mapoly0002s0070' => 'mpo', 'Mapoly0029s0099' => 'mpo', 'MBI07_g24742_MAGBIO' => 'mbi', 'MBI10_g27988_MAGBIO' => 'mbi', 'MBI11_g13057_MAGBIO' => 'mbi', 'MD02G1137200' => 'mdo', 'MD06G1137200' => 'mdo', 'MD07G1122300' => 'mdo', 'MD09G1078200' => 'mdo', 'MD13G1123700' => 'mdo', 'MD14G1151900' => 'mdo', 'MD17G1030900' => 'mdo', 'MD17G1068200' => 'mdo', 'MD17G1068600' => 'mdo', 'Medtr3g077540' => 'mtr', 'Medtr4g105530' => 'mtr', 'Medtr8g076580' => 'mtr', 'Medtr8g076590' => 'mtr', 'Medtr8g096410' => 'mtr', 'MELO3C016411.2' => 'cme', 'MELO3C017780.2' => 'cme', 'MELO3C022560.2' => 'cme', 'MELO3C026187.2' => 'cme', 'MELO3C026286.2' => 'cme', 'MELO3C032854.2' => 'cme', 'Migut.H02495' => 'egut', 'Migut.I00561' => 'egut', 'Migut.K01015' => 'egut', 'Migut.K01016' => 'egut', 'Migut.L00743' => 'egut', 'Migut.L00744' => 'egut', 'Migut.L00746' => 'egut', 'Migut.L00798' => 'egut', 'Migut.L00799' => 'egut', 'Migut.N02096' => 'egut', 'MSTRG.11259' => 'ama', 'MSTRG.23142' => 'ama', 'MSTRG.2499' => 'ama', 'Nitab4.5_0000003g0730' => 'nta', 'Nitab4.5_0000137g0020' => 'nta', 'Nitab4.5_0000721g0210' => 'nta', 'Nitab4.5_0000723g0050' => 'nta', 'Nitab4.5_0000913g0070' => 'nta', 'Nitab4.5_0001332g0040' => 'nta', 'Nitab4.5_0001771g0050' => 'nta', 'Nitab4.5_0001918g0050' => 'nta', 'Nitab4.5_0002686g0030' => 'nta', 'Nitab4.5_0003156g0020' => 'nta', 'Nitab4.5_0003383g0040' => 'nta', 'Nitab4.5_0003918g0010' => 'nta', 'Nitab4.5_0006760g0010' => 'nta', 'Nn1g05981' => 'nnu', 'Nn1g06288' => 'nnu', 'Nn3g16371' => 'nnu', 'Nn3g16786' => 'nnu', 'Nn4g22232' => 'nnu', 'Oeu005144.1' => 'oeu', 'Oeu005145.1' => 'oeu', 'Oeu011348.1' => 'oeu', 'Oeu016415.1' => 'oeu', 'Oeu023501.1' => 'oeu', 'Oeu044473.1' => 'oeu', 'Oeu048892.2' => 'oeu', 'Os01g0549200' => 'osa', 'Os02g0469300' => 'osa', 'Os04g0311100' => 'osa', 'Os06g0474900' => 'osa', 'Os10g0181700' => 'osa', 'Os11g0454800' => 'osa', 'Peaxi162Scf00037g00714' => 'pax', 'Peaxi162Scf00084g01217' => 'pax', 'Peaxi162Scf00257g00217' => 'pax', 'Peaxi162Scf00516g00215' => 'pax', 'Peaxi162Scf00689g00123' => 'pax', 'PGR044G2719' => 'pgr', 'PGR083G1360' => 'pgr', 'PGR102G2849' => 'pgr', 'PGR119G2534' => 'pgr', 'PGSC0003DMG400003538' => 'stu', 'PGSC0003DMG400028138' => 'stu', 'PGSC0003DMG400031732' => 'stu', 'PGSC0003DMG400038165' => 'stu', 'Phvul.002G284600' => 'pvu', 'Phvul.003G258200' => 'pvu', 'Phvul.009G176500' => 'pvu', 'Potri.003G167201' => 'ptr', 'Potri.005G118400' => 'ptr', 'Potri.012G089000' => 'ptr', 'Potri.012G102800' => 'ptr', 'Potri.015G079400' => 'ptr', 'Potri.015G100900' => 'ptr', 'Pp3c14_9810' => 'ppa', 'Pp3c15_10450' => 'ppa', 'Pp3c20_19150' => 'ppa', 'Pp3c23_12740' => 'ppa', 'Pp3c23_6310' => 'ppa', 'Pp3c24_3720' => 'ppa', 'Pp3c27_2580' => 'ppa', 'Pp3c9_8990' => 'ppa', 'PRCOL_00002854' => 'pco', 'Prupe.1G221200' => 'ppe', 'Prupe.3G289000' => 'ppe', 'Prupe.5G147000' => 'ppe', 'Prupe.6G157300' => 'ppe', 'Prupe.7G163400' => 'ppe', 'Psat0s2177g0040' => 'psa', 'Psat3g174760' => 'psa', 'Psat3g192160' => 'psa', 'Psat4g058520' => 'psa', 'Psat4g096840' => 'psa', 'Psat7g037320' => 'psa', 'PSO017G1274' => 'pso', 'PSO017G5166' => 'pso', 'PSO063G4558' => 'pso', 'PSO170G4458' => 'pso', 'PSO170G5005' => 'pso', 'PSO210G6156' => 'pso', 'PSO210G6635' => 'pso', 'PSO210G7397' => 'pso', 'PSO210G7700' => 'pso', 'PSO455G0035' => 'pso', 'PSO455G0180' => 'pso', 'PSO478G4515' => 'pso', 'PSO832G1305' => 'pso', 'PSO832G3489' => 'pso', 'QL02p075247' => 'qlo', 'QL03p051148' => 'qlo', 'QL05p010313' => 'qlo', 'QL06p034627' => 'qlo', 'QL10p001889' => 'qlo', 'QL10p010846' => 'qlo', 'RcHm_v2.0_Chr1g0350621' => 'rch', 'RcHm_v2.0_Chr1g0350641' => 'rch', 'RcHm_v2.0_Chr2g0092891' => 'rch', 'RcHm_v2.0_Chr2g0100251' => 'rch', 'RcHm_v2.0_Chr2g0158661' => 'rch', 'RcHm_v2.0_Chr2g0172741' => 'rch', 'RcHm_v2.0_Chr4g0429571' => 'rch', 'RcHm_v2.0_Chr5g0042471' => 'rch', 'RcHm_v2.0_Chr7g0189451' => 'rch', 'Rhsim08G0052000' => 'rsi', 'Rhsim08G0174400' => 'rsi', 'Rhsim08G0193200' => 'rsi', 'Rhsim10G0214800' => 'rsi', 'Rhsim10G0214900' => 'rsi', 'Rhsim10G0215000' => 'rsi', 'Rhsim12G0022900' => 'rsi', 'Rhsim12G0177500' => 'rsi', 'Rhsim12G0177700' => 'rsi', 'Sabra03G0122600' => 'sbr', 'Sabra05G0097400' => 'sbr', 'Sabra12G0064100' => 'sbr', 'Sabra15G0121300' => 'sbr', 'SalBow2G0642' => 'sbo', 'SalBow5G2667' => 'sbo', 'SalBow5G4873' => 'sbo', 'SalBow8G2395' => 'sbo', 'Sc03g0003290' => 'sci', 'Sc10g0010130' => 'sci', 'Sc22g0003650' => 'sci', 'Sed0001603' => 'sed', 'Sed0004259' => 'sed', 'Sed0006789' => 'sed', 'Sed0011838' => 'sed', 'Sed0012964' => 'sed', 'Sed0016383' => 'sed', 'Sed0019010' => 'sed', 'Sed0020188' => 'sed', 'SEGI_04702' => 'sgi', 'SEGI_17231' => 'sgi', 'SEGI_18877' => 'sgi', 'SEGI_25196' => 'sgi', 'SEGI_25515' => 'sgi', 'SEGI_28445' => 'sgi', 'SEGI_37452' => 'sgi', 'SGA_v2.0_scaffold188G40336' => 'sas', 'SGA_v2.0_scaffold228G43247' => 'sas', 'SGA_v2.0_scaffold280G46853' => 'sas', 'SGA_v2.0_scaffold34G13808' => 'sas', 'SGA_v2.0_scaffold40G15576' => 'sas', 'SGA_v2.0_scaffold611G53188' => 'sas', 'SGA_v2.0_scaffold78G25461' => 'sas', 'SGA_v2.0_scaffold90G27888' => 'sas', 'SHI08601' => 'shi', 'SHI08606' => 'shi', 'SHI17117' => 'shi', 'SHI17119' => 'shi', 'SMO118G0201' => 'smo', 'SMO169G0247' => 'smo', 'SMO176G0006' => 'smo', 'SMO176G0015' => 'smo', 'SMO202G0006' => 'smo', 'SMO240G0050' => 'smo', 'SMO286G0009' => 'smo', 'SMO338G0033' => 'smo', 'SMO356G0533' => 'smo', 'SMO364G0382' => 'smo', 'SMO367G0166' => 'smo', 'SMO367G1098' => 'smo', 'Solyc01g009920.3' => 'sly', 'Solyc01g099300.3' => 'sly', 'Solyc02g084700.3' => 'sly', 'Solyc03g097520.3' => 'sly', 'Solyc06g071580.3' => 'sly', 'Solyc10g081760.3' => 'sly', 'Sopen01g005480' => 'spe', 'Sopen01g042850' => 'spe', 'Sopen02g029370' => 'spe', 'Sopen03g028280' => 'spe', 'Sopen06g027870' => 'spe', 'Sopen10g032270' => 'spe', 'Sp5g18180' => 'spa', 'Sp6g12880' => 'spa', 'Sp6g30850' => 'spa', 'Sp7g22960' => 'spa', 'Sp7g34010' => 'spa', 'SpUn1326_0010' => 'spa', 'TAR371G0242' => 'tar', 'TAR622G0638' => 'tar', 'TAR628G1548' => 'tar', 'TAR629G1079' => 'tar', 'TAR629G3413' => 'tar', 'THA.LOC104804249' => 'tha', 'THA.LOC104808315' => 'tha', 'THA.LOC104809238' => 'tha', 'THA.LOC104825484' => 'tha', 'Thecc.01G025500' => 'tca', 'Thecc.03G015800' => 'tca', 'Thecc.03G018000' => 'tca', 'Thecc.03G134800' => 'tca', 'Thecc.04G014700' => 'tca', 'Thhalv10006991m.g' => 'esa', 'Thhalv10012707m.g' => 'esa', 'Thhalv10015739m.g' => 'esa', 'Thhalv10024553m.g' => 'esa', 'Thhalv10024673m.g' => 'esa', 'Thhalv10029187m.g' => 'esa', 'TPR.G12971' => 'tpr', 'TPR.G29396' => 'tpr', 'TPR.G33376' => 'tpr', 'TPR.G35508' => 'tpr', 'TPR.G35516' => 'tpr', 'TPR.G37317' => 'tpr', 'TPR.G37389' => 'tpr', 'TPR.G37523' => 'tpr', 'TPR.G559' => 'tpr', 'TWI14G0070' => 'twi', 'TWI14G0729' => 'twi', 'TWI18G0596' => 'twi', 'TWI39G0780' => 'twi', 'TWI39G0850' => 'twi', 'TWI73G1052' => 'twi', 'unitig_52.g17485' => 'ugi', 'unitig_61.g26355' => 'ugi', 'vmacro01040' => 'vma', 'vmacro16731' => 'vma', 'vmacro18270' => 'vma', 'vmacro19142' => 'vma', 'vmacro19407' => 'vma', 'vmacro19408' => 'vma', 'vmacro21899' => 'vma', 'vmacro21900' => 'vma', 'vmacro21901' => 'vma', 'VMungo0251G0490' => 'vmu', 'VMungo0251G1748' => 'vmu', 'VMungo1309G0421' => 'vmu', 'Zm00001eb086500' => 'zma', 'Zm00001eb150680' => 'zma', 'Zm00001eb162330' => 'zma', 'Zm00001eb203130' => 'zma', 'Zm00001eb369480' => 'zma', 'Zm00001eb382340' => 'zma', 'Zm00001eb416360' => 'zma' ) $gf_id = 'HOM05D000902' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000902' ) $data_identifier = 'HOM05D000902' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 13, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 10, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 6, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 9, 'hma' => (int) 12, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 4, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 6, 'ppa' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 6, 'rch' => (int) 9, 'rsi' => (int) 9, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 12, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 3, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416360' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000902', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '663', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02470' => 'bna', 'A01p16260' => 'bna', 'A02p01680' => 'bna', 'A03p16600' => 'bna', 'A03p55660' => 'bna', 'A03p64160' => 'bna', 'A03p64170' => 'bna', 'A08p31900' => 'bna', 'A09p59530' => 'bna', 'A10p08230' => 'bna', 'A10p25090' => 'bna', 'Aa31LG3G7100' => 'aar', 'Aa31LG3G7110' => 'aar', 'Aa31LG6G13160' => 'aar', 'Aa31LG7G10770' => 'aar', 'Aa31LG7G3830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2723' => 'aag', 'Actinidia08045' => 'ach', 'Actinidia08888' => 'ach', 'Actinidia18333' => 'ach', 'Actinidia19334' => 'ach', 'Actinidia25552' => 'ach', 'Actinidia26089' => 'ach', 'Actinidia30615' => 'ach', 'Actinidia30616' => 'ach', 'Actinidia33083' => 'ach', 'Actinidia35762' => 'ach', 'Ah.02g110620' => 'amhyb', 'Ah.11g046390' => 'amhyb', 'AL1G31670' => 'aly', 'AL6G23730' => 'aly', 'AL7G14740' => 'aly', 'AL7G14750' => 'aly', 'AL7G14760' => 'aly', 'AL7G28220' => 'aly', 'AL8G24940' => 'aly', 'Aqoxy3G01665' => 'aox', 'Aqoxy3G02853' => 'aox', 'Aqoxy5G01513' => 'aox', 'Aqoxy5G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8SKA4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ75LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKDA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0LJZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7REX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZP4YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWX7I5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2QKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS0L9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPCD8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q161UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC7XCF' => 'arhy', 'AT1G19100' => 'ath', 'AT4G24970' => 'ath', 'AT4G36270' => 'ath', 'AT4G36280' => 'ath', 'AT4G36290' => 'ath', 'AT5G13130' => 'ath', 'AT5G50780' => 'ath', 'ATR0582G266' => 'atr', 'ATR0661G195' => 'atr', 'ATR1152G031' => 'atr', 'Atru.chr11.2382' => 'acertr', 'Atru.chr12.2337' => 'acertr', 'Atru.chr3.744' => 'acertr', 'Atru.chr6.1870' => 'acertr', 'Atru.chr9.2515' => 'acertr', 'AUR62004120' => 'cqu', 'AUR62005667' => 'cqu', 'AUR62007634' => 'cqu', 'AUR62008186' => 'cqu', 'AUR62008187' => 'cqu', 'AUR62008188' => 'cqu', 'AUR62027954' => 'cqu', 'AUR62028766' => 'cqu', 'AUR62028767' => 'cqu', 'AUR62028768' => 'cqu', 'AUR62028886' => 'cqu', 'AUR62029563' => 'cqu', 'AUR62038832' => 'cqu', 'BcaB01g04149' => 'bca', 'BcaB03g12940' => 'bca', 'BcaB03g13090' => 'bca', 'BcaB03g14466' => 'bca', 'BcaB05g24035' => 'bca', 'BcaC01g06050' => 'bca', 'BcaC04g19148' => 'bca', 'BcaC04g20761' => 'bca', 'BcaC06g32845' => 'bca', 'BcaC07g41274' => 'bca', 'BcaC09g50827' => 'bca', 'BcaNung00741' => 'bca', 'BcaNung00742' => 'bca', 'BcaNung01859' => 'bca', 'BcaNung03985' => 'bca', 'BcaNung03989' => 'bca', 'BcaNung05661' => 'bca', 'BolC1t00257H' => 'bol', 'BolC1t01956H' => 'bol', 'BolC2t06534H' => 'bol', 'BolC3t14334H' => 'bol', 'BolC5t30451H' => 'bol', 'BolC7t45880H' => 'bol', 'BolC7t46586H' => 'bol', 'BolC8t49301H' => 'bol', 'BolC8t51837H' => 'bol', 'BolC9t56822H' => 'bol', 'BolC9t59235H' => 'bol', 'BraA01t00234Z' => 'bra', 'BraA01t01563Z' => 'bra', 'BraA02t05147Z' => 'bra', 'BraA03t10947Z' => 'bra', 'BraA03t14633Z' => 'bra', 'BraA08t35112Z' => 'bra', 'BraA09t41330Z' => 'bra', 'BraA10t44570Z' => 'bra', 'C01p02670' => 'bna', 'C01p20260' => 'bna', 'C02p05890' => 'bna', 'C03p19530' => 'bna', 'C05p17470' => 'bna', 'C07p53900' => 'bna', 'C07p61630' => 'bna', 'C08p16800' => 'bna', 'C08p42810' => 'bna', 'C09p39480' => 'bna', 'C09p63980' => 'bna', 'CAN.G1001.7' => 'can', 'CAN.G1034.55' => 'can', 'CAN.G143.7' => 'can', 'CAN.G3340.1' => 'can', 'CAN.G358.19' => 'can', 'CAN.G373.2' => 'can', 'CAN.G674.16' => 'can', 'CAN.G674.17' => 'can', 'CAN.G674.18' => 'can', 'CAN.G732.2' => 'can', 'CAN.G732.3' => 'can', 'CAN.G993.39' => 'can', 'CANSAT01G2052' => 'cansat', 'CANSAT80G0070' => 'cansat', 'CANSAT80G0483' => 'cansat', 'CANSAT80G0625' => 'cansat', 'CARHR019690' => 'chi', 'CARHR080280' => 'chi', 'CARHR152750' => 'chi', 'CARHR152760' => 'chi', 'CARHR152770' => 'chi', 'CARHR200340' => 'chi', 'CARHR232370' => 'chi', 'CARHR244670' => 'chi', 'CARHR244680' => 'chi', 'CARHR257520' => 'chi', 'Carub.0001s1872' => 'cru', 'Carub.0006s1130' => 'cru', 'Carub.0007s0396' => 'cru', 'Carub.0007s0397' => 'cru', 'Carub.0007s1608' => 'cru', 'Carub.0008s1068' => 'cru', 'Carub.0008s1077' => 'cru', 'Ca_16158_v3' => 'car', 'Ca_17571_v3' => 'car', 'Ca_21936_v3' => 'car', 'Ca_22350_v3' => 'car', 'CBR_g22445' => 'cbr', 'CBR_g26290' => 'cbr', 'Cc04_g09610' => 'ccan', 'Cc04_g12280' => 'ccan', 'Cc07_g10230' => 'ccan', 'CDE02G0093' => 'cde', 'CDE02G0701' => 'cde', 'CDE04G1050' => 'cde', 'CDE05G1833' => 'cde', 'CDE05G3058' => 'cde', 'CDE05G3380' => 'cde', 'CDE06G0536' => 'cde', 'Cfa006923' => 'cfa', 'Cfa009402' => 'cfa', 'Cfa018751' => 'cfa', 'Cfa019164' => 'cfa', 'Cfa022935' => 'cfa', 'Ciclev10019081m.g' => 'ccl', 'Ciclev10025076m.g' => 'ccl', 'Ciclev10030712m.g' => 'ccl', 'Ciclev10033760m.g' => 'ccl', 'CiPaw.05G105600' => 'cil', 'CiPaw.08G136700' => 'cil', 'CiPaw.11G003900' => 'cil', 'CiPaw.11G023700' => 'cil', 'CiPaw.12G003700' => 'cil', 'ClCG06G017100' => 'cla', 'ClCG06G018110' => 'cla', 'ClCG07G008800' => 'cla', 'ClCG07G015330' => 'cla', 'COL.COLO4_13698' => 'col', 'COL.COLO4_16659' => 'col', 'COL.COLO4_21986' => 'col', 'COL.COLO4_24049' => 'col', 'COL.COLO4_29061' => 'col', 'COL.COLO4_29075' => 'col', 'COL.COLO4_30094' => 'col', 'Cpa.g.c33689' => 'cpa', 'Cpa.g.sc108.39' => 'cpa', 'Cpa.g.sc108.41' => 'cpa', 'Cpa.g.sc1163.1' => 'cpa', 'Cpa.g.sc4.155' => 'cpa', 'Cpa.g.sc6.194' => 'cpa', 'CsaV3_1G000340' => 'csa', 'CsaV3_1G001400' => 'csa', 'CsaV3_4G002220' => 'csa', 'CsaV3_4G005370' => 'csa', 'CSS0007487' => 'camsi', 'CSS0008066' => 'camsi', 'CSS0009120' => 'camsi', 'CSS0015512' => 'camsi', 'CSS0022409' => 'camsi', 'CSS0025358' => 'camsi', 'CSS0044547' => 'camsi', 'DCAR_013057' => 'dca', 'DCAR_015058' => 'dca', 'DCAR_016027' => 'dca', 'DCAR_017327' => 'dca', 'DCAR_020743' => 'dca', 'DCAR_026157' => 'dca', 'DCAR_032339' => 'dca', 'DCAR_032340' => 'dca', 'Dinv11200' => 'din', 'Dinv11201' => 'din', 'Dinv20631' => 'din', 'Dinv23182' => 'din', 'Dinv33466' => 'din', 'Dinv33583' => 'din', 'Dinv38565' => 'din', 'Duzib068G0200' => 'dzi', 'Duzib147G0132' => 'dzi', 'Duzib147G0635' => 'dzi', 'Duzib205G1670' => 'dzi', 'Duzib251G0606' => 'dzi', 'ECA232G3336' => 'eca', 'ECA232G3763' => 'eca', 'ECA232G4845' => 'eca', 'ECA234G1607' => 'eca', 'ECA246G0932' => 'eca', 'ECA247G0781' => 'eca', 'ECA247G1932' => 'eca', 'ECA247G2079' => 'eca', 'ECA247G3338' => 'eca', 'ECA247G4115' => 'eca', 'EL10Ac3g06552' => 'bvu', 'EL10Ac5g10721' => 'bvu', 'EL10Ac5g10722' => 'bvu', 'EL10Ac5g10723' => 'bvu', 'EL10Ac5g11361' => 'bvu', 'EL10Ac6g13553' => 'bvu', 'EL10As8g23872' => 'bvu', 'Eucgr.B00250' => 'egr', 'Eucgr.B00251' => 'egr', 'Eucgr.B03533' => 'egr', 'Eucgr.I02381' => 'egr', 'Eucgr.K02700' => 'egr', 'FAN02G0174' => 'fan', 'FAN02G3146' => 'fan', 'FAN04G1672' => 'fan', 'FAN04G2273' => 'fan', 'FAN05G2791' => 'fan', 'FAN05G4035' => 'fan', 'FAN07G0834' => 'fan', 'FAN08G1198' => 'fan', 'FAN09G4182' => 'fan', 'FAN12G0496' => 'fan', 'FAN13G1027' => 'fan', 'FAN13G2951' => 'fan', 'FAN14G0705' => 'fan', 'FAN14G0720' => 'fan', 'FAN17G0201' => 'fan', 'FAN17G2665' => 'fan', 'FAN18G1456' => 'fan', 'FAN18G1525' => 'fan', 'FAN18G3500' => 'fan', 'FAN28G2670' => 'fan', 'FvH4_1g12391' => 'fve', 'FvH4_4g23220' => 'fve', 'FvH4_5g08810' => 'fve', 'FvH4_5g28960' => 'fve', 'FvH4_6g42820' => 'fve', 'FvH4_6g51110' => 'fve', 'Glyma.02G051802' => 'gma', 'Glyma.04G185300' => 'gma', 'Glyma.05G202900' => 'gma', 'Glyma.08G010300' => 'gma', 'Glyma.16G131900' => 'gma', 'Glyma.17G087900' => 'gma', 'Gohir.A07G048600' => 'ghi', 'Gohir.A11G179000' => 'ghi', 'Gohir.A12G140900' => 'ghi', 'Gohir.A12G140950' => 'ghi', 'Gohir.A12G191700' => 'ghi', 'Gohir.A13G086300' => 'ghi', 'Gohir.D07G052900' => 'ghi', 'Gohir.D11G186600' => 'ghi', 'Gohir.D12G145575' => 'ghi', 'Gohir.D12G145650' => 'ghi', 'Gohir.D12G145725' => 'ghi', 'Gohir.D12G194050' => 'ghi', 'Gohir.D13G091800' => 'ghi', 'Gorai.001G055900' => 'gra', 'Gorai.007G198400' => 'gra', 'Gorai.008G157000' => 'gra', 'Gorai.008G157100' => 'gra', 'Gorai.008G208700' => 'gra', 'Gorai.010G138700' => 'gra', 'GSVIVG01000977001' => 'vvi', 'GSVIVG01007708001' => 'vvi', 'GSVIVG01008587001' => 'vvi', 'GSVIVG01018849001' => 'vvi', 'GSVIVG01032432001' => 'vvi', 'HanXRQChr02g0034131' => 'han', 'HanXRQChr02g0035981' => 'han', 'HanXRQChr02g0035991' => 'han', 'HanXRQChr05g0155611' => 'han', 'HanXRQChr05g0155621' => 'han', 'HanXRQChr08g0236501' => 'han', 'HanXRQChr09g0261321' => 'han', 'HanXRQChr09g0272081' => 'han', 'HanXRQChr10g0310741' => 'han', 'HanXRQChr11g0325591' => 'han', 'HanXRQChr12g0385691' => 'han', 'HanXRQChr13g0387801' => 'han', 'HanXRQChr15g0463011' => 'han', 'Haze_03826' => 'cav', 'Haze_03827' => 'cav', 'Haze_07183' => 'cav', 'Haze_07537' => 'cav', 'Haze_07539' => 'cav', 'Haze_12461' => 'cav', 'Haze_16115' => 'cav', 'Haze_16808' => 'cav', 'Haze_18531' => 'cav', 'Hma1.2p1_0046F.1_g026700' => 'hma', 'Hma1.2p1_0046F.1_g026710' => 'hma', 'Hma1.2p1_0168F.1_g074340' => 'hma', 'Hma1.2p1_0266F.1_g107030' => 'hma', 'Hma1.2p1_0266F.1_g107060' => 'hma', 'Hma1.2p1_0275F.1_g110510' => 'hma', 'Hma1.2p1_0592F.1_g185490' => 'hma', 'Hma1.2p1_0592F.1_g185500' => 'hma', 'Hma1.2p1_0592F.1_g185510' => 'hma', 'Hma1.2p1_0592F.1_g185520' => 'hma', 'Hma1.2p1_0592F.1_g185530' => 'hma', 'Hma1.2p1_0818F.1_g223450' => 'hma', 'HPP92_009708' => 'vpl', 'HPP92_009793' => 'vpl', 'HPP92_009796' => 'vpl', 'HPP92_009797' => 'vpl', 'HPP92_014940' => 'vpl', 'HPP92_014988' => 'vpl', 'Hund02463' => 'sun', 'Hund02760' => 'sun', 'Hund05071' => 'sun', 'Hund10108' => 'sun', 'Hund11204' => 'sun', 'Hund14016' => 'sun', 'Hund16464' => 'sun', 'Lalb_Chr09g0333391' => 'lal', 'Lalb_Chr11g0070461' => 'lal', 'Lalb_Chr12g0201671' => 'lal', 'Lalb_Chr13g0297161' => 'lal', 'Lj1g0002823' => 'lja', 'Lj3C1074T6' => 'lonja', 'Lj4A212T28' => 'lonja', 'Lj4g0005516' => 'lja', 'Lj4g0013705' => 'lja', 'Lj4g0027865' => 'lja', 'Lj5C92G16' => 'lonja', 'Lj5C92T12' => 'lonja', 'Lj7C596T3' => 'lonja', 'Lj9A446G59' => 'lonja', 'Lj9A482G21' => 'lonja', 'Lsat_1_v5_gn_1_28261' => 'lsa', 'Lsat_1_v5_gn_1_28281' => 'lsa', 'Lsat_1_v5_gn_1_32721' => 'lsa', 'Lsat_1_v5_gn_4_151760' => 'lsa', 'Lsat_1_v5_gn_4_2120' => 'lsa', 'Lsat_1_v5_gn_4_75761' => 'lsa', 'Lsat_1_v5_gn_5_10920' => 'lsa', 'Manes.02G099900' => 'mes', 'Manes.11G096200' => 'mes', 'Manes.12G007200' => 'mes', 'Manes.14G048300' => 'mes', 'Manes.17G114700' => 'mes', 'Mapoly0002s0070' => 'mpo', 'Mapoly0029s0099' => 'mpo', 'MBI07_g24742_MAGBIO' => 'mbi', 'MBI10_g27988_MAGBIO' => 'mbi', 'MBI11_g13057_MAGBIO' => 'mbi', 'MD02G1137200' => 'mdo', 'MD06G1137200' => 'mdo', 'MD07G1122300' => 'mdo', 'MD09G1078200' => 'mdo', 'MD13G1123700' => 'mdo', 'MD14G1151900' => 'mdo', 'MD17G1030900' => 'mdo', 'MD17G1068200' => 'mdo', 'MD17G1068600' => 'mdo', 'Medtr3g077540' => 'mtr', 'Medtr4g105530' => 'mtr', 'Medtr8g076580' => 'mtr', 'Medtr8g076590' => 'mtr', 'Medtr8g096410' => 'mtr', 'MELO3C016411.2' => 'cme', 'MELO3C017780.2' => 'cme', 'MELO3C022560.2' => 'cme', 'MELO3C026187.2' => 'cme', 'MELO3C026286.2' => 'cme', 'MELO3C032854.2' => 'cme', 'Migut.H02495' => 'egut', 'Migut.I00561' => 'egut', 'Migut.K01015' => 'egut', 'Migut.K01016' => 'egut', 'Migut.L00743' => 'egut', 'Migut.L00744' => 'egut', 'Migut.L00746' => 'egut', 'Migut.L00798' => 'egut', 'Migut.L00799' => 'egut', 'Migut.N02096' => 'egut', 'MSTRG.11259' => 'ama', 'MSTRG.23142' => 'ama', 'MSTRG.2499' => 'ama', 'Nitab4.5_0000003g0730' => 'nta', 'Nitab4.5_0000137g0020' => 'nta', 'Nitab4.5_0000721g0210' => 'nta', 'Nitab4.5_0000723g0050' => 'nta', 'Nitab4.5_0000913g0070' => 'nta', 'Nitab4.5_0001332g0040' => 'nta', 'Nitab4.5_0001771g0050' => 'nta', 'Nitab4.5_0001918g0050' => 'nta', 'Nitab4.5_0002686g0030' => 'nta', 'Nitab4.5_0003156g0020' => 'nta', 'Nitab4.5_0003383g0040' => 'nta', 'Nitab4.5_0003918g0010' => 'nta', 'Nitab4.5_0006760g0010' => 'nta', 'Nn1g05981' => 'nnu', 'Nn1g06288' => 'nnu', 'Nn3g16371' => 'nnu', 'Nn3g16786' => 'nnu', 'Nn4g22232' => 'nnu', 'Oeu005144.1' => 'oeu', 'Oeu005145.1' => 'oeu', 'Oeu011348.1' => 'oeu', 'Oeu016415.1' => 'oeu', 'Oeu023501.1' => 'oeu', 'Oeu044473.1' => 'oeu', 'Oeu048892.2' => 'oeu', 'Os01g0549200' => 'osa', 'Os02g0469300' => 'osa', 'Os04g0311100' => 'osa', 'Os06g0474900' => 'osa', 'Os10g0181700' => 'osa', 'Os11g0454800' => 'osa', 'Peaxi162Scf00037g00714' => 'pax', 'Peaxi162Scf00084g01217' => 'pax', 'Peaxi162Scf00257g00217' => 'pax', 'Peaxi162Scf00516g00215' => 'pax', 'Peaxi162Scf00689g00123' => 'pax', 'PGR044G2719' => 'pgr', 'PGR083G1360' => 'pgr', 'PGR102G2849' => 'pgr', 'PGR119G2534' => 'pgr', 'PGSC0003DMG400003538' => 'stu', 'PGSC0003DMG400028138' => 'stu', 'PGSC0003DMG400031732' => 'stu', 'PGSC0003DMG400038165' => 'stu', 'Phvul.002G284600' => 'pvu', 'Phvul.003G258200' => 'pvu', 'Phvul.009G176500' => 'pvu', 'Potri.003G167201' => 'ptr', 'Potri.005G118400' => 'ptr', 'Potri.012G089000' => 'ptr', 'Potri.012G102800' => 'ptr', 'Potri.015G079400' => 'ptr', 'Potri.015G100900' => 'ptr', 'Pp3c14_9810' => 'ppa', 'Pp3c15_10450' => 'ppa', 'Pp3c20_19150' => 'ppa', 'Pp3c23_12740' => 'ppa', 'Pp3c23_6310' => 'ppa', 'Pp3c24_3720' => 'ppa', 'Pp3c27_2580' => 'ppa', 'Pp3c9_8990' => 'ppa', 'PRCOL_00002854' => 'pco', 'Prupe.1G221200' => 'ppe', 'Prupe.3G289000' => 'ppe', 'Prupe.5G147000' => 'ppe', 'Prupe.6G157300' => 'ppe', 'Prupe.7G163400' => 'ppe', 'Psat0s2177g0040' => 'psa', 'Psat3g174760' => 'psa', 'Psat3g192160' => 'psa', 'Psat4g058520' => 'psa', 'Psat4g096840' => 'psa', 'Psat7g037320' => 'psa', 'PSO017G1274' => 'pso', 'PSO017G5166' => 'pso', 'PSO063G4558' => 'pso', 'PSO170G4458' => 'pso', 'PSO170G5005' => 'pso', 'PSO210G6156' => 'pso', 'PSO210G6635' => 'pso', 'PSO210G7397' => 'pso', 'PSO210G7700' => 'pso', 'PSO455G0035' => 'pso', 'PSO455G0180' => 'pso', 'PSO478G4515' => 'pso', 'PSO832G1305' => 'pso', 'PSO832G3489' => 'pso', 'QL02p075247' => 'qlo', 'QL03p051148' => 'qlo', 'QL05p010313' => 'qlo', 'QL06p034627' => 'qlo', 'QL10p001889' => 'qlo', 'QL10p010846' => 'qlo', 'RcHm_v2.0_Chr1g0350621' => 'rch', 'RcHm_v2.0_Chr1g0350641' => 'rch', 'RcHm_v2.0_Chr2g0092891' => 'rch', 'RcHm_v2.0_Chr2g0100251' => 'rch', 'RcHm_v2.0_Chr2g0158661' => 'rch', 'RcHm_v2.0_Chr2g0172741' => 'rch', 'RcHm_v2.0_Chr4g0429571' => 'rch', 'RcHm_v2.0_Chr5g0042471' => 'rch', 'RcHm_v2.0_Chr7g0189451' => 'rch', 'Rhsim08G0052000' => 'rsi', 'Rhsim08G0174400' => 'rsi', 'Rhsim08G0193200' => 'rsi', 'Rhsim10G0214800' => 'rsi', 'Rhsim10G0214900' => 'rsi', 'Rhsim10G0215000' => 'rsi', 'Rhsim12G0022900' => 'rsi', 'Rhsim12G0177500' => 'rsi', 'Rhsim12G0177700' => 'rsi', 'Sabra03G0122600' => 'sbr', 'Sabra05G0097400' => 'sbr', 'Sabra12G0064100' => 'sbr', 'Sabra15G0121300' => 'sbr', 'SalBow2G0642' => 'sbo', 'SalBow5G2667' => 'sbo', 'SalBow5G4873' => 'sbo', 'SalBow8G2395' => 'sbo', 'Sc03g0003290' => 'sci', 'Sc10g0010130' => 'sci', 'Sc22g0003650' => 'sci', 'Sed0001603' => 'sed', 'Sed0004259' => 'sed', 'Sed0006789' => 'sed', 'Sed0011838' => 'sed', 'Sed0012964' => 'sed', 'Sed0016383' => 'sed', 'Sed0019010' => 'sed', 'Sed0020188' => 'sed', 'SEGI_04702' => 'sgi', 'SEGI_17231' => 'sgi', 'SEGI_18877' => 'sgi', 'SEGI_25196' => 'sgi', 'SEGI_25515' => 'sgi', 'SEGI_28445' => 'sgi', 'SEGI_37452' => 'sgi', 'SGA_v2.0_scaffold188G40336' => 'sas', 'SGA_v2.0_scaffold228G43247' => 'sas', 'SGA_v2.0_scaffold280G46853' => 'sas', 'SGA_v2.0_scaffold34G13808' => 'sas', 'SGA_v2.0_scaffold40G15576' => 'sas', 'SGA_v2.0_scaffold611G53188' => 'sas', 'SGA_v2.0_scaffold78G25461' => 'sas', 'SGA_v2.0_scaffold90G27888' => 'sas', 'SHI08601' => 'shi', 'SHI08606' => 'shi', 'SHI17117' => 'shi', 'SHI17119' => 'shi', 'SMO118G0201' => 'smo', 'SMO169G0247' => 'smo', 'SMO176G0006' => 'smo', 'SMO176G0015' => 'smo', 'SMO202G0006' => 'smo', 'SMO240G0050' => 'smo', 'SMO286G0009' => 'smo', 'SMO338G0033' => 'smo', 'SMO356G0533' => 'smo', 'SMO364G0382' => 'smo', 'SMO367G0166' => 'smo', 'SMO367G1098' => 'smo', 'Solyc01g009920.3' => 'sly', 'Solyc01g099300.3' => 'sly', 'Solyc02g084700.3' => 'sly', 'Solyc03g097520.3' => 'sly', 'Solyc06g071580.3' => 'sly', 'Solyc10g081760.3' => 'sly', 'Sopen01g005480' => 'spe', 'Sopen01g042850' => 'spe', 'Sopen02g029370' => 'spe', 'Sopen03g028280' => 'spe', 'Sopen06g027870' => 'spe', 'Sopen10g032270' => 'spe', 'Sp5g18180' => 'spa', 'Sp6g12880' => 'spa', 'Sp6g30850' => 'spa', 'Sp7g22960' => 'spa', 'Sp7g34010' => 'spa', 'SpUn1326_0010' => 'spa', 'TAR371G0242' => 'tar', 'TAR622G0638' => 'tar', 'TAR628G1548' => 'tar', 'TAR629G1079' => 'tar', 'TAR629G3413' => 'tar', 'THA.LOC104804249' => 'tha', 'THA.LOC104808315' => 'tha', 'THA.LOC104809238' => 'tha', 'THA.LOC104825484' => 'tha', 'Thecc.01G025500' => 'tca', 'Thecc.03G015800' => 'tca', 'Thecc.03G018000' => 'tca', 'Thecc.03G134800' => 'tca', 'Thecc.04G014700' => 'tca', 'Thhalv10006991m.g' => 'esa', 'Thhalv10012707m.g' => 'esa', 'Thhalv10015739m.g' => 'esa', 'Thhalv10024553m.g' => 'esa', 'Thhalv10024673m.g' => 'esa', 'Thhalv10029187m.g' => 'esa', 'TPR.G12971' => 'tpr', 'TPR.G29396' => 'tpr', 'TPR.G33376' => 'tpr', 'TPR.G35508' => 'tpr', 'TPR.G35516' => 'tpr', 'TPR.G37317' => 'tpr', 'TPR.G37389' => 'tpr', 'TPR.G37523' => 'tpr', 'TPR.G559' => 'tpr', 'TWI14G0070' => 'twi', 'TWI14G0729' => 'twi', 'TWI18G0596' => 'twi', 'TWI39G0780' => 'twi', 'TWI39G0850' => 'twi', 'TWI73G1052' => 'twi', 'unitig_52.g17485' => 'ugi', 'unitig_61.g26355' => 'ugi', 'vmacro01040' => 'vma', 'vmacro16731' => 'vma', 'vmacro18270' => 'vma', 'vmacro19142' => 'vma', 'vmacro19407' => 'vma', 'vmacro19408' => 'vma', 'vmacro21899' => 'vma', 'vmacro21900' => 'vma', 'vmacro21901' => 'vma', 'VMungo0251G0490' => 'vmu', 'VMungo0251G1748' => 'vmu', 'VMungo1309G0421' => 'vmu', 'Zm00001eb086500' => 'zma', 'Zm00001eb150680' => 'zma', 'Zm00001eb162330' => 'zma', 'Zm00001eb203130' => 'zma', 'Zm00001eb369480' => 'zma', 'Zm00001eb382340' => 'zma', 'Zm00001eb416360' => 'zma' ), 'gf_id' => 'HOM05D000902', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000902' ), 'data_identifier' => 'HOM05D000902', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000902', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '663', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02470' => 'bna', 'A01p16260' => 'bna', 'A02p01680' => 'bna', 'A03p16600' => 'bna', 'A03p55660' => 'bna', 'A03p64160' => 'bna', 'A03p64170' => 'bna', 'A08p31900' => 'bna', 'A09p59530' => 'bna', 'A10p08230' => 'bna', 'A10p25090' => 'bna', 'Aa31LG3G7100' => 'aar', 'Aa31LG3G7110' => 'aar', 'Aa31LG6G13160' => 'aar', 'Aa31LG7G10770' => 'aar', 'Aa31LG7G3830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2723' => 'aag', 'Actinidia08045' => 'ach', 'Actinidia08888' => 'ach', 'Actinidia18333' => 'ach', 'Actinidia19334' => 'ach', 'Actinidia25552' => 'ach', 'Actinidia26089' => 'ach', 'Actinidia30615' => 'ach', 'Actinidia30616' => 'ach', 'Actinidia33083' => 'ach', 'Actinidia35762' => 'ach', 'Ah.02g110620' => 'amhyb', 'Ah.11g046390' => 'amhyb', 'AL1G31670' => 'aly', 'AL6G23730' => 'aly', 'AL7G14740' => 'aly', 'AL7G14750' => 'aly', 'AL7G14760' => 'aly', 'AL7G28220' => 'aly', 'AL8G24940' => 'aly', 'Aqoxy3G01665' => 'aox', 'Aqoxy3G02853' => 'aox', 'Aqoxy5G01513' => 'aox', 'Aqoxy5G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8SKA4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ75LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKDA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0LJZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7REX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZP4YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWX7I5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2QKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS0L9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPCD8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q161UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC7XCF' => 'arhy', 'AT1G19100' => 'ath', 'AT4G24970' => 'ath', 'AT4G36270' => 'ath', 'AT4G36280' => 'ath', 'AT4G36290' => 'ath', 'AT5G13130' => 'ath', 'AT5G50780' => 'ath', 'ATR0582G266' => 'atr', 'ATR0661G195' => 'atr', 'ATR1152G031' => 'atr', 'Atru.chr11.2382' => 'acertr', 'Atru.chr12.2337' => 'acertr', 'Atru.chr3.744' => 'acertr', 'Atru.chr6.1870' => 'acertr', 'Atru.chr9.2515' => 'acertr', 'AUR62004120' => 'cqu', 'AUR62005667' => 'cqu', 'AUR62007634' => 'cqu', 'AUR62008186' => 'cqu', 'AUR62008187' => 'cqu', 'AUR62008188' => 'cqu', 'AUR62027954' => 'cqu', 'AUR62028766' => 'cqu', 'AUR62028767' => 'cqu', 'AUR62028768' => 'cqu', 'AUR62028886' => 'cqu', 'AUR62029563' => 'cqu', 'AUR62038832' => 'cqu', 'BcaB01g04149' => 'bca', 'BcaB03g12940' => 'bca', 'BcaB03g13090' => 'bca', 'BcaB03g14466' => 'bca', 'BcaB05g24035' => 'bca', 'BcaC01g06050' => 'bca', 'BcaC04g19148' => 'bca', 'BcaC04g20761' => 'bca', 'BcaC06g32845' => 'bca', 'BcaC07g41274' => 'bca', 'BcaC09g50827' => 'bca', 'BcaNung00741' => 'bca', 'BcaNung00742' => 'bca', 'BcaNung01859' => 'bca', 'BcaNung03985' => 'bca', 'BcaNung03989' => 'bca', 'BcaNung05661' => 'bca', 'BolC1t00257H' => 'bol', 'BolC1t01956H' => 'bol', 'BolC2t06534H' => 'bol', 'BolC3t14334H' => 'bol', 'BolC5t30451H' => 'bol', 'BolC7t45880H' => 'bol', 'BolC7t46586H' => 'bol', 'BolC8t49301H' => 'bol', 'BolC8t51837H' => 'bol', 'BolC9t56822H' => 'bol', 'BolC9t59235H' => 'bol', 'BraA01t00234Z' => 'bra', 'BraA01t01563Z' => 'bra', 'BraA02t05147Z' => 'bra', 'BraA03t10947Z' => 'bra', 'BraA03t14633Z' => 'bra', 'BraA08t35112Z' => 'bra', 'BraA09t41330Z' => 'bra', 'BraA10t44570Z' => 'bra', 'C01p02670' => 'bna', 'C01p20260' => 'bna', 'C02p05890' => 'bna', 'C03p19530' => 'bna', 'C05p17470' => 'bna', 'C07p53900' => 'bna', 'C07p61630' => 'bna', 'C08p16800' => 'bna', 'C08p42810' => 'bna', 'C09p39480' => 'bna', 'C09p63980' => 'bna', 'CAN.G1001.7' => 'can', 'CAN.G1034.55' => 'can', 'CAN.G143.7' => 'can', 'CAN.G3340.1' => 'can', 'CAN.G358.19' => 'can', 'CAN.G373.2' => 'can', 'CAN.G674.16' => 'can', 'CAN.G674.17' => 'can', 'CAN.G674.18' => 'can', 'CAN.G732.2' => 'can', 'CAN.G732.3' => 'can', 'CAN.G993.39' => 'can', 'CANSAT01G2052' => 'cansat', 'CANSAT80G0070' => 'cansat', 'CANSAT80G0483' => 'cansat', 'CANSAT80G0625' => 'cansat', 'CARHR019690' => 'chi', 'CARHR080280' => 'chi', 'CARHR152750' => 'chi', 'CARHR152760' => 'chi', 'CARHR152770' => 'chi', 'CARHR200340' => 'chi', 'CARHR232370' => 'chi', 'CARHR244670' => 'chi', 'CARHR244680' => 'chi', 'CARHR257520' => 'chi', 'Carub.0001s1872' => 'cru', 'Carub.0006s1130' => 'cru', 'Carub.0007s0396' => 'cru', 'Carub.0007s0397' => 'cru', 'Carub.0007s1608' => 'cru', 'Carub.0008s1068' => 'cru', 'Carub.0008s1077' => 'cru', 'Ca_16158_v3' => 'car', 'Ca_17571_v3' => 'car', 'Ca_21936_v3' => 'car', 'Ca_22350_v3' => 'car', 'CBR_g22445' => 'cbr', 'CBR_g26290' => 'cbr', 'Cc04_g09610' => 'ccan', 'Cc04_g12280' => 'ccan', 'Cc07_g10230' => 'ccan', 'CDE02G0093' => 'cde', 'CDE02G0701' => 'cde', 'CDE04G1050' => 'cde', 'CDE05G1833' => 'cde', 'CDE05G3058' => 'cde', 'CDE05G3380' => 'cde', 'CDE06G0536' => 'cde', 'Cfa006923' => 'cfa', 'Cfa009402' => 'cfa', 'Cfa018751' => 'cfa', 'Cfa019164' => 'cfa', 'Cfa022935' => 'cfa', 'Ciclev10019081m.g' => 'ccl', 'Ciclev10025076m.g' => 'ccl', 'Ciclev10030712m.g' => 'ccl', 'Ciclev10033760m.g' => 'ccl', 'CiPaw.05G105600' => 'cil', 'CiPaw.08G136700' => 'cil', 'CiPaw.11G003900' => 'cil', 'CiPaw.11G023700' => 'cil', 'CiPaw.12G003700' => 'cil', 'ClCG06G017100' => 'cla', 'ClCG06G018110' => 'cla', 'ClCG07G008800' => 'cla', 'ClCG07G015330' => 'cla', 'COL.COLO4_13698' => 'col', 'COL.COLO4_16659' => 'col', 'COL.COLO4_21986' => 'col', 'COL.COLO4_24049' => 'col', 'COL.COLO4_29061' => 'col', 'COL.COLO4_29075' => 'col', 'COL.COLO4_30094' => 'col', 'Cpa.g.c33689' => 'cpa', 'Cpa.g.sc108.39' => 'cpa', 'Cpa.g.sc108.41' => 'cpa', 'Cpa.g.sc1163.1' => 'cpa', 'Cpa.g.sc4.155' => 'cpa', 'Cpa.g.sc6.194' => 'cpa', 'CsaV3_1G000340' => 'csa', 'CsaV3_1G001400' => 'csa', 'CsaV3_4G002220' => 'csa', 'CsaV3_4G005370' => 'csa', 'CSS0007487' => 'camsi', 'CSS0008066' => 'camsi', 'CSS0009120' => 'camsi', 'CSS0015512' => 'camsi', 'CSS0022409' => 'camsi', 'CSS0025358' => 'camsi', 'CSS0044547' => 'camsi', 'DCAR_013057' => 'dca', 'DCAR_015058' => 'dca', 'DCAR_016027' => 'dca', 'DCAR_017327' => 'dca', 'DCAR_020743' => 'dca', 'DCAR_026157' => 'dca', 'DCAR_032339' => 'dca', 'DCAR_032340' => 'dca', 'Dinv11200' => 'din', 'Dinv11201' => 'din', 'Dinv20631' => 'din', 'Dinv23182' => 'din', 'Dinv33466' => 'din', 'Dinv33583' => 'din', 'Dinv38565' => 'din', 'Duzib068G0200' => 'dzi', 'Duzib147G0132' => 'dzi', 'Duzib147G0635' => 'dzi', 'Duzib205G1670' => 'dzi', 'Duzib251G0606' => 'dzi', 'ECA232G3336' => 'eca', 'ECA232G3763' => 'eca', 'ECA232G4845' => 'eca', 'ECA234G1607' => 'eca', 'ECA246G0932' => 'eca', 'ECA247G0781' => 'eca', 'ECA247G1932' => 'eca', 'ECA247G2079' => 'eca', 'ECA247G3338' => 'eca', 'ECA247G4115' => 'eca', 'EL10Ac3g06552' => 'bvu', 'EL10Ac5g10721' => 'bvu', 'EL10Ac5g10722' => 'bvu', 'EL10Ac5g10723' => 'bvu', 'EL10Ac5g11361' => 'bvu', 'EL10Ac6g13553' => 'bvu', 'EL10As8g23872' => 'bvu', 'Eucgr.B00250' => 'egr', 'Eucgr.B00251' => 'egr', 'Eucgr.B03533' => 'egr', 'Eucgr.I02381' => 'egr', 'Eucgr.K02700' => 'egr', 'FAN02G0174' => 'fan', 'FAN02G3146' => 'fan', 'FAN04G1672' => 'fan', 'FAN04G2273' => 'fan', 'FAN05G2791' => 'fan', 'FAN05G4035' => 'fan', 'FAN07G0834' => 'fan', 'FAN08G1198' => 'fan', 'FAN09G4182' => 'fan', 'FAN12G0496' => 'fan', 'FAN13G1027' => 'fan', 'FAN13G2951' => 'fan', 'FAN14G0705' => 'fan', 'FAN14G0720' => 'fan', 'FAN17G0201' => 'fan', 'FAN17G2665' => 'fan', 'FAN18G1456' => 'fan', 'FAN18G1525' => 'fan', 'FAN18G3500' => 'fan', 'FAN28G2670' => 'fan', 'FvH4_1g12391' => 'fve', 'FvH4_4g23220' => 'fve', 'FvH4_5g08810' => 'fve', 'FvH4_5g28960' => 'fve', 'FvH4_6g42820' => 'fve', 'FvH4_6g51110' => 'fve', 'Glyma.02G051802' => 'gma', 'Glyma.04G185300' => 'gma', 'Glyma.05G202900' => 'gma', 'Glyma.08G010300' => 'gma', 'Glyma.16G131900' => 'gma', 'Glyma.17G087900' => 'gma', 'Gohir.A07G048600' => 'ghi', 'Gohir.A11G179000' => 'ghi', 'Gohir.A12G140900' => 'ghi', 'Gohir.A12G140950' => 'ghi', 'Gohir.A12G191700' => 'ghi', 'Gohir.A13G086300' => 'ghi', 'Gohir.D07G052900' => 'ghi', 'Gohir.D11G186600' => 'ghi', 'Gohir.D12G145575' => 'ghi', 'Gohir.D12G145650' => 'ghi', 'Gohir.D12G145725' => 'ghi', 'Gohir.D12G194050' => 'ghi', 'Gohir.D13G091800' => 'ghi', 'Gorai.001G055900' => 'gra', 'Gorai.007G198400' => 'gra', 'Gorai.008G157000' => 'gra', 'Gorai.008G157100' => 'gra', 'Gorai.008G208700' => 'gra', 'Gorai.010G138700' => 'gra', 'GSVIVG01000977001' => 'vvi', 'GSVIVG01007708001' => 'vvi', 'GSVIVG01008587001' => 'vvi', 'GSVIVG01018849001' => 'vvi', 'GSVIVG01032432001' => 'vvi', 'HanXRQChr02g0034131' => 'han', 'HanXRQChr02g0035981' => 'han', 'HanXRQChr02g0035991' => 'han', 'HanXRQChr05g0155611' => 'han', 'HanXRQChr05g0155621' => 'han', 'HanXRQChr08g0236501' => 'han', 'HanXRQChr09g0261321' => 'han', 'HanXRQChr09g0272081' => 'han', 'HanXRQChr10g0310741' => 'han', 'HanXRQChr11g0325591' => 'han', 'HanXRQChr12g0385691' => 'han', 'HanXRQChr13g0387801' => 'han', 'HanXRQChr15g0463011' => 'han', 'Haze_03826' => 'cav', 'Haze_03827' => 'cav', 'Haze_07183' => 'cav', 'Haze_07537' => 'cav', 'Haze_07539' => 'cav', 'Haze_12461' => 'cav', 'Haze_16115' => 'cav', 'Haze_16808' => 'cav', 'Haze_18531' => 'cav', 'Hma1.2p1_0046F.1_g026700' => 'hma', 'Hma1.2p1_0046F.1_g026710' => 'hma', 'Hma1.2p1_0168F.1_g074340' => 'hma', 'Hma1.2p1_0266F.1_g107030' => 'hma', 'Hma1.2p1_0266F.1_g107060' => 'hma', 'Hma1.2p1_0275F.1_g110510' => 'hma', 'Hma1.2p1_0592F.1_g185490' => 'hma', 'Hma1.2p1_0592F.1_g185500' => 'hma', 'Hma1.2p1_0592F.1_g185510' => 'hma', 'Hma1.2p1_0592F.1_g185520' => 'hma', 'Hma1.2p1_0592F.1_g185530' => 'hma', 'Hma1.2p1_0818F.1_g223450' => 'hma', 'HPP92_009708' => 'vpl', 'HPP92_009793' => 'vpl', 'HPP92_009796' => 'vpl', 'HPP92_009797' => 'vpl', 'HPP92_014940' => 'vpl', 'HPP92_014988' => 'vpl', 'Hund02463' => 'sun', 'Hund02760' => 'sun', 'Hund05071' => 'sun', 'Hund10108' => 'sun', 'Hund11204' => 'sun', 'Hund14016' => 'sun', 'Hund16464' => 'sun', 'Lalb_Chr09g0333391' => 'lal', 'Lalb_Chr11g0070461' => 'lal', 'Lalb_Chr12g0201671' => 'lal', 'Lalb_Chr13g0297161' => 'lal', 'Lj1g0002823' => 'lja', 'Lj3C1074T6' => 'lonja', 'Lj4A212T28' => 'lonja', 'Lj4g0005516' => 'lja', 'Lj4g0013705' => 'lja', 'Lj4g0027865' => 'lja', 'Lj5C92G16' => 'lonja', 'Lj5C92T12' => 'lonja', 'Lj7C596T3' => 'lonja', 'Lj9A446G59' => 'lonja', 'Lj9A482G21' => 'lonja', 'Lsat_1_v5_gn_1_28261' => 'lsa', 'Lsat_1_v5_gn_1_28281' => 'lsa', 'Lsat_1_v5_gn_1_32721' => 'lsa', 'Lsat_1_v5_gn_4_151760' => 'lsa', 'Lsat_1_v5_gn_4_2120' => 'lsa', 'Lsat_1_v5_gn_4_75761' => 'lsa', 'Lsat_1_v5_gn_5_10920' => 'lsa', 'Manes.02G099900' => 'mes', 'Manes.11G096200' => 'mes', 'Manes.12G007200' => 'mes', 'Manes.14G048300' => 'mes', 'Manes.17G114700' => 'mes', 'Mapoly0002s0070' => 'mpo', 'Mapoly0029s0099' => 'mpo', 'MBI07_g24742_MAGBIO' => 'mbi', 'MBI10_g27988_MAGBIO' => 'mbi', 'MBI11_g13057_MAGBIO' => 'mbi', 'MD02G1137200' => 'mdo', 'MD06G1137200' => 'mdo', 'MD07G1122300' => 'mdo', 'MD09G1078200' => 'mdo', 'MD13G1123700' => 'mdo', 'MD14G1151900' => 'mdo', 'MD17G1030900' => 'mdo', 'MD17G1068200' => 'mdo', 'MD17G1068600' => 'mdo', 'Medtr3g077540' => 'mtr', 'Medtr4g105530' => 'mtr', 'Medtr8g076580' => 'mtr', 'Medtr8g076590' => 'mtr', 'Medtr8g096410' => 'mtr', 'MELO3C016411.2' => 'cme', 'MELO3C017780.2' => 'cme', 'MELO3C022560.2' => 'cme', 'MELO3C026187.2' => 'cme', 'MELO3C026286.2' => 'cme', 'MELO3C032854.2' => 'cme', 'Migut.H02495' => 'egut', 'Migut.I00561' => 'egut', 'Migut.K01015' => 'egut', 'Migut.K01016' => 'egut', 'Migut.L00743' => 'egut', 'Migut.L00744' => 'egut', 'Migut.L00746' => 'egut', 'Migut.L00798' => 'egut', 'Migut.L00799' => 'egut', 'Migut.N02096' => 'egut', 'MSTRG.11259' => 'ama', 'MSTRG.23142' => 'ama', 'MSTRG.2499' => 'ama', 'Nitab4.5_0000003g0730' => 'nta', 'Nitab4.5_0000137g0020' => 'nta', 'Nitab4.5_0000721g0210' => 'nta', 'Nitab4.5_0000723g0050' => 'nta', 'Nitab4.5_0000913g0070' => 'nta', 'Nitab4.5_0001332g0040' => 'nta', 'Nitab4.5_0001771g0050' => 'nta', 'Nitab4.5_0001918g0050' => 'nta', 'Nitab4.5_0002686g0030' => 'nta', 'Nitab4.5_0003156g0020' => 'nta', 'Nitab4.5_0003383g0040' => 'nta', 'Nitab4.5_0003918g0010' => 'nta', 'Nitab4.5_0006760g0010' => 'nta', 'Nn1g05981' => 'nnu', 'Nn1g06288' => 'nnu', 'Nn3g16371' => 'nnu', 'Nn3g16786' => 'nnu', 'Nn4g22232' => 'nnu', 'Oeu005144.1' => 'oeu', 'Oeu005145.1' => 'oeu', 'Oeu011348.1' => 'oeu', 'Oeu016415.1' => 'oeu', 'Oeu023501.1' => 'oeu', 'Oeu044473.1' => 'oeu', 'Oeu048892.2' => 'oeu', 'Os01g0549200' => 'osa', 'Os02g0469300' => 'osa', 'Os04g0311100' => 'osa', 'Os06g0474900' => 'osa', 'Os10g0181700' => 'osa', 'Os11g0454800' => 'osa', 'Peaxi162Scf00037g00714' => 'pax', 'Peaxi162Scf00084g01217' => 'pax', 'Peaxi162Scf00257g00217' => 'pax', 'Peaxi162Scf00516g00215' => 'pax', 'Peaxi162Scf00689g00123' => 'pax', 'PGR044G2719' => 'pgr', 'PGR083G1360' => 'pgr', 'PGR102G2849' => 'pgr', 'PGR119G2534' => 'pgr', 'PGSC0003DMG400003538' => 'stu', 'PGSC0003DMG400028138' => 'stu', 'PGSC0003DMG400031732' => 'stu', 'PGSC0003DMG400038165' => 'stu', 'Phvul.002G284600' => 'pvu', 'Phvul.003G258200' => 'pvu', 'Phvul.009G176500' => 'pvu', 'Potri.003G167201' => 'ptr', 'Potri.005G118400' => 'ptr', 'Potri.012G089000' => 'ptr', 'Potri.012G102800' => 'ptr', 'Potri.015G079400' => 'ptr', 'Potri.015G100900' => 'ptr', 'Pp3c14_9810' => 'ppa', 'Pp3c15_10450' => 'ppa', 'Pp3c20_19150' => 'ppa', 'Pp3c23_12740' => 'ppa', 'Pp3c23_6310' => 'ppa', 'Pp3c24_3720' => 'ppa', 'Pp3c27_2580' => 'ppa', 'Pp3c9_8990' => 'ppa', 'PRCOL_00002854' => 'pco', 'Prupe.1G221200' => 'ppe', 'Prupe.3G289000' => 'ppe', 'Prupe.5G147000' => 'ppe', 'Prupe.6G157300' => 'ppe', 'Prupe.7G163400' => 'ppe', 'Psat0s2177g0040' => 'psa', 'Psat3g174760' => 'psa', 'Psat3g192160' => 'psa', 'Psat4g058520' => 'psa', 'Psat4g096840' => 'psa', 'Psat7g037320' => 'psa', 'PSO017G1274' => 'pso', 'PSO017G5166' => 'pso', 'PSO063G4558' => 'pso', 'PSO170G4458' => 'pso', 'PSO170G5005' => 'pso', 'PSO210G6156' => 'pso', 'PSO210G6635' => 'pso', 'PSO210G7397' => 'pso', 'PSO210G7700' => 'pso', 'PSO455G0035' => 'pso', 'PSO455G0180' => 'pso', 'PSO478G4515' => 'pso', 'PSO832G1305' => 'pso', 'PSO832G3489' => 'pso', 'QL02p075247' => 'qlo', 'QL03p051148' => 'qlo', 'QL05p010313' => 'qlo', 'QL06p034627' => 'qlo', 'QL10p001889' => 'qlo', 'QL10p010846' => 'qlo', 'RcHm_v2.0_Chr1g0350621' => 'rch', 'RcHm_v2.0_Chr1g0350641' => 'rch', 'RcHm_v2.0_Chr2g0092891' => 'rch', 'RcHm_v2.0_Chr2g0100251' => 'rch', 'RcHm_v2.0_Chr2g0158661' => 'rch', 'RcHm_v2.0_Chr2g0172741' => 'rch', 'RcHm_v2.0_Chr4g0429571' => 'rch', 'RcHm_v2.0_Chr5g0042471' => 'rch', 'RcHm_v2.0_Chr7g0189451' => 'rch', 'Rhsim08G0052000' => 'rsi', 'Rhsim08G0174400' => 'rsi', 'Rhsim08G0193200' => 'rsi', 'Rhsim10G0214800' => 'rsi', 'Rhsim10G0214900' => 'rsi', 'Rhsim10G0215000' => 'rsi', 'Rhsim12G0022900' => 'rsi', 'Rhsim12G0177500' => 'rsi', 'Rhsim12G0177700' => 'rsi', 'Sabra03G0122600' => 'sbr', 'Sabra05G0097400' => 'sbr', 'Sabra12G0064100' => 'sbr', 'Sabra15G0121300' => 'sbr', 'SalBow2G0642' => 'sbo', 'SalBow5G2667' => 'sbo', 'SalBow5G4873' => 'sbo', 'SalBow8G2395' => 'sbo', 'Sc03g0003290' => 'sci', 'Sc10g0010130' => 'sci', 'Sc22g0003650' => 'sci', 'Sed0001603' => 'sed', 'Sed0004259' => 'sed', 'Sed0006789' => 'sed', 'Sed0011838' => 'sed', 'Sed0012964' => 'sed', 'Sed0016383' => 'sed', 'Sed0019010' => 'sed', 'Sed0020188' => 'sed', 'SEGI_04702' => 'sgi', 'SEGI_17231' => 'sgi', 'SEGI_18877' => 'sgi', 'SEGI_25196' => 'sgi', 'SEGI_25515' => 'sgi', 'SEGI_28445' => 'sgi', 'SEGI_37452' => 'sgi', 'SGA_v2.0_scaffold188G40336' => 'sas', 'SGA_v2.0_scaffold228G43247' => 'sas', 'SGA_v2.0_scaffold280G46853' => 'sas', 'SGA_v2.0_scaffold34G13808' => 'sas', 'SGA_v2.0_scaffold40G15576' => 'sas', 'SGA_v2.0_scaffold611G53188' => 'sas', 'SGA_v2.0_scaffold78G25461' => 'sas', 'SGA_v2.0_scaffold90G27888' => 'sas', 'SHI08601' => 'shi', 'SHI08606' => 'shi', 'SHI17117' => 'shi', 'SHI17119' => 'shi', 'SMO118G0201' => 'smo', 'SMO169G0247' => 'smo', 'SMO176G0006' => 'smo', 'SMO176G0015' => 'smo', 'SMO202G0006' => 'smo', 'SMO240G0050' => 'smo', 'SMO286G0009' => 'smo', 'SMO338G0033' => 'smo', 'SMO356G0533' => 'smo', 'SMO364G0382' => 'smo', 'SMO367G0166' => 'smo', 'SMO367G1098' => 'smo', 'Solyc01g009920.3' => 'sly', 'Solyc01g099300.3' => 'sly', 'Solyc02g084700.3' => 'sly', 'Solyc03g097520.3' => 'sly', 'Solyc06g071580.3' => 'sly', 'Solyc10g081760.3' => 'sly', 'Sopen01g005480' => 'spe', 'Sopen01g042850' => 'spe', 'Sopen02g029370' => 'spe', 'Sopen03g028280' => 'spe', 'Sopen06g027870' => 'spe', 'Sopen10g032270' => 'spe', 'Sp5g18180' => 'spa', 'Sp6g12880' => 'spa', 'Sp6g30850' => 'spa', 'Sp7g22960' => 'spa', 'Sp7g34010' => 'spa', 'SpUn1326_0010' => 'spa', 'TAR371G0242' => 'tar', 'TAR622G0638' => 'tar', 'TAR628G1548' => 'tar', 'TAR629G1079' => 'tar', 'TAR629G3413' => 'tar', 'THA.LOC104804249' => 'tha', 'THA.LOC104808315' => 'tha', 'THA.LOC104809238' => 'tha', 'THA.LOC104825484' => 'tha', 'Thecc.01G025500' => 'tca', 'Thecc.03G015800' => 'tca', 'Thecc.03G018000' => 'tca', 'Thecc.03G134800' => 'tca', 'Thecc.04G014700' => 'tca', 'Thhalv10006991m.g' => 'esa', 'Thhalv10012707m.g' => 'esa', 'Thhalv10015739m.g' => 'esa', 'Thhalv10024553m.g' => 'esa', 'Thhalv10024673m.g' => 'esa', 'Thhalv10029187m.g' => 'esa', 'TPR.G12971' => 'tpr', 'TPR.G29396' => 'tpr', 'TPR.G33376' => 'tpr', 'TPR.G35508' => 'tpr', 'TPR.G35516' => 'tpr', 'TPR.G37317' => 'tpr', 'TPR.G37389' => 'tpr', 'TPR.G37523' => 'tpr', 'TPR.G559' => 'tpr', 'TWI14G0070' => 'twi', 'TWI14G0729' => 'twi', 'TWI18G0596' => 'twi', 'TWI39G0780' => 'twi', 'TWI39G0850' => 'twi', 'TWI73G1052' => 'twi', 'unitig_52.g17485' => 'ugi', 'unitig_61.g26355' => 'ugi', 'vmacro01040' => 'vma', 'vmacro16731' => 'vma', 'vmacro18270' => 'vma', 'vmacro19142' => 'vma', 'vmacro19407' => 'vma', 'vmacro19408' => 'vma', 'vmacro21899' => 'vma', 'vmacro21900' => 'vma', 'vmacro21901' => 'vma', 'VMungo0251G0490' => 'vmu', 'VMungo0251G1748' => 'vmu', 'VMungo1309G0421' => 'vmu', 'Zm00001eb086500' => 'zma', 'Zm00001eb150680' => 'zma', 'Zm00001eb162330' => 'zma', 'Zm00001eb203130' => 'zma', 'Zm00001eb369480' => 'zma', 'Zm00001eb382340' => 'zma', 'Zm00001eb416360' => 'zma' ) $gf_id = 'HOM05D000902' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000902' ) $data_identifier = 'HOM05D000902' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 13, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 10, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 6, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 9, 'hma' => (int) 12, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 4, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 6, 'ppa' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 6, 'rch' => (int) 9, 'rsi' => (int) 9, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 12, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 3, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416360' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000902', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '663', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02470' => 'bna', 'A01p16260' => 'bna', 'A02p01680' => 'bna', 'A03p16600' => 'bna', 'A03p55660' => 'bna', 'A03p64160' => 'bna', 'A03p64170' => 'bna', 'A08p31900' => 'bna', 'A09p59530' => 'bna', 'A10p08230' => 'bna', 'A10p25090' => 'bna', 'Aa31LG3G7100' => 'aar', 'Aa31LG3G7110' => 'aar', 'Aa31LG6G13160' => 'aar', 'Aa31LG7G10770' => 'aar', 'Aa31LG7G3830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2723' => 'aag', 'Actinidia08045' => 'ach', 'Actinidia08888' => 'ach', 'Actinidia18333' => 'ach', 'Actinidia19334' => 'ach', 'Actinidia25552' => 'ach', 'Actinidia26089' => 'ach', 'Actinidia30615' => 'ach', 'Actinidia30616' => 'ach', 'Actinidia33083' => 'ach', 'Actinidia35762' => 'ach', 'Ah.02g110620' => 'amhyb', 'Ah.11g046390' => 'amhyb', 'AL1G31670' => 'aly', 'AL6G23730' => 'aly', 'AL7G14740' => 'aly', 'AL7G14750' => 'aly', 'AL7G14760' => 'aly', 'AL7G28220' => 'aly', 'AL8G24940' => 'aly', 'Aqoxy3G01665' => 'aox', 'Aqoxy3G02853' => 'aox', 'Aqoxy5G01513' => 'aox', 'Aqoxy5G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8SKA4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ75LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKDA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0LJZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7REX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZP4YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWX7I5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2QKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS0L9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPCD8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q161UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC7XCF' => 'arhy', 'AT1G19100' => 'ath', 'AT4G24970' => 'ath', 'AT4G36270' => 'ath', 'AT4G36280' => 'ath', 'AT4G36290' => 'ath', 'AT5G13130' => 'ath', 'AT5G50780' => 'ath', 'ATR0582G266' => 'atr', 'ATR0661G195' => 'atr', 'ATR1152G031' => 'atr', 'Atru.chr11.2382' => 'acertr', 'Atru.chr12.2337' => 'acertr', 'Atru.chr3.744' => 'acertr', 'Atru.chr6.1870' => 'acertr', 'Atru.chr9.2515' => 'acertr', 'AUR62004120' => 'cqu', 'AUR62005667' => 'cqu', 'AUR62007634' => 'cqu', 'AUR62008186' => 'cqu', 'AUR62008187' => 'cqu', 'AUR62008188' => 'cqu', 'AUR62027954' => 'cqu', 'AUR62028766' => 'cqu', 'AUR62028767' => 'cqu', 'AUR62028768' => 'cqu', 'AUR62028886' => 'cqu', 'AUR62029563' => 'cqu', 'AUR62038832' => 'cqu', 'BcaB01g04149' => 'bca', 'BcaB03g12940' => 'bca', 'BcaB03g13090' => 'bca', 'BcaB03g14466' => 'bca', 'BcaB05g24035' => 'bca', 'BcaC01g06050' => 'bca', 'BcaC04g19148' => 'bca', 'BcaC04g20761' => 'bca', 'BcaC06g32845' => 'bca', 'BcaC07g41274' => 'bca', 'BcaC09g50827' => 'bca', 'BcaNung00741' => 'bca', 'BcaNung00742' => 'bca', 'BcaNung01859' => 'bca', 'BcaNung03985' => 'bca', 'BcaNung03989' => 'bca', 'BcaNung05661' => 'bca', 'BolC1t00257H' => 'bol', 'BolC1t01956H' => 'bol', 'BolC2t06534H' => 'bol', 'BolC3t14334H' => 'bol', 'BolC5t30451H' => 'bol', 'BolC7t45880H' => 'bol', 'BolC7t46586H' => 'bol', 'BolC8t49301H' => 'bol', 'BolC8t51837H' => 'bol', 'BolC9t56822H' => 'bol', 'BolC9t59235H' => 'bol', 'BraA01t00234Z' => 'bra', 'BraA01t01563Z' => 'bra', 'BraA02t05147Z' => 'bra', 'BraA03t10947Z' => 'bra', 'BraA03t14633Z' => 'bra', 'BraA08t35112Z' => 'bra', 'BraA09t41330Z' => 'bra', 'BraA10t44570Z' => 'bra', 'C01p02670' => 'bna', 'C01p20260' => 'bna', 'C02p05890' => 'bna', 'C03p19530' => 'bna', 'C05p17470' => 'bna', 'C07p53900' => 'bna', 'C07p61630' => 'bna', 'C08p16800' => 'bna', 'C08p42810' => 'bna', 'C09p39480' => 'bna', 'C09p63980' => 'bna', 'CAN.G1001.7' => 'can', 'CAN.G1034.55' => 'can', 'CAN.G143.7' => 'can', 'CAN.G3340.1' => 'can', 'CAN.G358.19' => 'can', 'CAN.G373.2' => 'can', 'CAN.G674.16' => 'can', 'CAN.G674.17' => 'can', 'CAN.G674.18' => 'can', 'CAN.G732.2' => 'can', 'CAN.G732.3' => 'can', 'CAN.G993.39' => 'can', 'CANSAT01G2052' => 'cansat', 'CANSAT80G0070' => 'cansat', 'CANSAT80G0483' => 'cansat', 'CANSAT80G0625' => 'cansat', 'CARHR019690' => 'chi', 'CARHR080280' => 'chi', 'CARHR152750' => 'chi', 'CARHR152760' => 'chi', 'CARHR152770' => 'chi', 'CARHR200340' => 'chi', 'CARHR232370' => 'chi', 'CARHR244670' => 'chi', 'CARHR244680' => 'chi', 'CARHR257520' => 'chi', 'Carub.0001s1872' => 'cru', 'Carub.0006s1130' => 'cru', 'Carub.0007s0396' => 'cru', 'Carub.0007s0397' => 'cru', 'Carub.0007s1608' => 'cru', 'Carub.0008s1068' => 'cru', 'Carub.0008s1077' => 'cru', 'Ca_16158_v3' => 'car', 'Ca_17571_v3' => 'car', 'Ca_21936_v3' => 'car', 'Ca_22350_v3' => 'car', 'CBR_g22445' => 'cbr', 'CBR_g26290' => 'cbr', 'Cc04_g09610' => 'ccan', 'Cc04_g12280' => 'ccan', 'Cc07_g10230' => 'ccan', 'CDE02G0093' => 'cde', 'CDE02G0701' => 'cde', 'CDE04G1050' => 'cde', 'CDE05G1833' => 'cde', 'CDE05G3058' => 'cde', 'CDE05G3380' => 'cde', 'CDE06G0536' => 'cde', 'Cfa006923' => 'cfa', 'Cfa009402' => 'cfa', 'Cfa018751' => 'cfa', 'Cfa019164' => 'cfa', 'Cfa022935' => 'cfa', 'Ciclev10019081m.g' => 'ccl', 'Ciclev10025076m.g' => 'ccl', 'Ciclev10030712m.g' => 'ccl', 'Ciclev10033760m.g' => 'ccl', 'CiPaw.05G105600' => 'cil', 'CiPaw.08G136700' => 'cil', 'CiPaw.11G003900' => 'cil', 'CiPaw.11G023700' => 'cil', 'CiPaw.12G003700' => 'cil', 'ClCG06G017100' => 'cla', 'ClCG06G018110' => 'cla', 'ClCG07G008800' => 'cla', 'ClCG07G015330' => 'cla', 'COL.COLO4_13698' => 'col', 'COL.COLO4_16659' => 'col', 'COL.COLO4_21986' => 'col', 'COL.COLO4_24049' => 'col', 'COL.COLO4_29061' => 'col', 'COL.COLO4_29075' => 'col', 'COL.COLO4_30094' => 'col', 'Cpa.g.c33689' => 'cpa', 'Cpa.g.sc108.39' => 'cpa', 'Cpa.g.sc108.41' => 'cpa', 'Cpa.g.sc1163.1' => 'cpa', 'Cpa.g.sc4.155' => 'cpa', 'Cpa.g.sc6.194' => 'cpa', 'CsaV3_1G000340' => 'csa', 'CsaV3_1G001400' => 'csa', 'CsaV3_4G002220' => 'csa', 'CsaV3_4G005370' => 'csa', 'CSS0007487' => 'camsi', 'CSS0008066' => 'camsi', 'CSS0009120' => 'camsi', 'CSS0015512' => 'camsi', 'CSS0022409' => 'camsi', 'CSS0025358' => 'camsi', 'CSS0044547' => 'camsi', 'DCAR_013057' => 'dca', 'DCAR_015058' => 'dca', 'DCAR_016027' => 'dca', 'DCAR_017327' => 'dca', 'DCAR_020743' => 'dca', 'DCAR_026157' => 'dca', 'DCAR_032339' => 'dca', 'DCAR_032340' => 'dca', 'Dinv11200' => 'din', 'Dinv11201' => 'din', 'Dinv20631' => 'din', 'Dinv23182' => 'din', 'Dinv33466' => 'din', 'Dinv33583' => 'din', 'Dinv38565' => 'din', 'Duzib068G0200' => 'dzi', 'Duzib147G0132' => 'dzi', 'Duzib147G0635' => 'dzi', 'Duzib205G1670' => 'dzi', 'Duzib251G0606' => 'dzi', 'ECA232G3336' => 'eca', 'ECA232G3763' => 'eca', 'ECA232G4845' => 'eca', 'ECA234G1607' => 'eca', 'ECA246G0932' => 'eca', 'ECA247G0781' => 'eca', 'ECA247G1932' => 'eca', 'ECA247G2079' => 'eca', 'ECA247G3338' => 'eca', 'ECA247G4115' => 'eca', 'EL10Ac3g06552' => 'bvu', 'EL10Ac5g10721' => 'bvu', 'EL10Ac5g10722' => 'bvu', 'EL10Ac5g10723' => 'bvu', 'EL10Ac5g11361' => 'bvu', 'EL10Ac6g13553' => 'bvu', 'EL10As8g23872' => 'bvu', 'Eucgr.B00250' => 'egr', 'Eucgr.B00251' => 'egr', 'Eucgr.B03533' => 'egr', 'Eucgr.I02381' => 'egr', 'Eucgr.K02700' => 'egr', 'FAN02G0174' => 'fan', 'FAN02G3146' => 'fan', 'FAN04G1672' => 'fan', 'FAN04G2273' => 'fan', 'FAN05G2791' => 'fan', 'FAN05G4035' => 'fan', 'FAN07G0834' => 'fan', 'FAN08G1198' => 'fan', 'FAN09G4182' => 'fan', 'FAN12G0496' => 'fan', 'FAN13G1027' => 'fan', 'FAN13G2951' => 'fan', 'FAN14G0705' => 'fan', 'FAN14G0720' => 'fan', 'FAN17G0201' => 'fan', 'FAN17G2665' => 'fan', 'FAN18G1456' => 'fan', 'FAN18G1525' => 'fan', 'FAN18G3500' => 'fan', 'FAN28G2670' => 'fan', 'FvH4_1g12391' => 'fve', 'FvH4_4g23220' => 'fve', 'FvH4_5g08810' => 'fve', 'FvH4_5g28960' => 'fve', 'FvH4_6g42820' => 'fve', 'FvH4_6g51110' => 'fve', 'Glyma.02G051802' => 'gma', 'Glyma.04G185300' => 'gma', 'Glyma.05G202900' => 'gma', 'Glyma.08G010300' => 'gma', 'Glyma.16G131900' => 'gma', 'Glyma.17G087900' => 'gma', 'Gohir.A07G048600' => 'ghi', 'Gohir.A11G179000' => 'ghi', 'Gohir.A12G140900' => 'ghi', 'Gohir.A12G140950' => 'ghi', 'Gohir.A12G191700' => 'ghi', 'Gohir.A13G086300' => 'ghi', 'Gohir.D07G052900' => 'ghi', 'Gohir.D11G186600' => 'ghi', 'Gohir.D12G145575' => 'ghi', 'Gohir.D12G145650' => 'ghi', 'Gohir.D12G145725' => 'ghi', 'Gohir.D12G194050' => 'ghi', 'Gohir.D13G091800' => 'ghi', 'Gorai.001G055900' => 'gra', 'Gorai.007G198400' => 'gra', 'Gorai.008G157000' => 'gra', 'Gorai.008G157100' => 'gra', 'Gorai.008G208700' => 'gra', 'Gorai.010G138700' => 'gra', 'GSVIVG01000977001' => 'vvi', 'GSVIVG01007708001' => 'vvi', 'GSVIVG01008587001' => 'vvi', 'GSVIVG01018849001' => 'vvi', 'GSVIVG01032432001' => 'vvi', 'HanXRQChr02g0034131' => 'han', 'HanXRQChr02g0035981' => 'han', 'HanXRQChr02g0035991' => 'han', 'HanXRQChr05g0155611' => 'han', 'HanXRQChr05g0155621' => 'han', 'HanXRQChr08g0236501' => 'han', 'HanXRQChr09g0261321' => 'han', 'HanXRQChr09g0272081' => 'han', 'HanXRQChr10g0310741' => 'han', 'HanXRQChr11g0325591' => 'han', 'HanXRQChr12g0385691' => 'han', 'HanXRQChr13g0387801' => 'han', 'HanXRQChr15g0463011' => 'han', 'Haze_03826' => 'cav', 'Haze_03827' => 'cav', 'Haze_07183' => 'cav', 'Haze_07537' => 'cav', 'Haze_07539' => 'cav', 'Haze_12461' => 'cav', 'Haze_16115' => 'cav', 'Haze_16808' => 'cav', 'Haze_18531' => 'cav', 'Hma1.2p1_0046F.1_g026700' => 'hma', 'Hma1.2p1_0046F.1_g026710' => 'hma', 'Hma1.2p1_0168F.1_g074340' => 'hma', 'Hma1.2p1_0266F.1_g107030' => 'hma', 'Hma1.2p1_0266F.1_g107060' => 'hma', 'Hma1.2p1_0275F.1_g110510' => 'hma', 'Hma1.2p1_0592F.1_g185490' => 'hma', 'Hma1.2p1_0592F.1_g185500' => 'hma', 'Hma1.2p1_0592F.1_g185510' => 'hma', 'Hma1.2p1_0592F.1_g185520' => 'hma', 'Hma1.2p1_0592F.1_g185530' => 'hma', 'Hma1.2p1_0818F.1_g223450' => 'hma', 'HPP92_009708' => 'vpl', 'HPP92_009793' => 'vpl', 'HPP92_009796' => 'vpl', 'HPP92_009797' => 'vpl', 'HPP92_014940' => 'vpl', 'HPP92_014988' => 'vpl', 'Hund02463' => 'sun', 'Hund02760' => 'sun', 'Hund05071' => 'sun', 'Hund10108' => 'sun', 'Hund11204' => 'sun', 'Hund14016' => 'sun', 'Hund16464' => 'sun', 'Lalb_Chr09g0333391' => 'lal', 'Lalb_Chr11g0070461' => 'lal', 'Lalb_Chr12g0201671' => 'lal', 'Lalb_Chr13g0297161' => 'lal', 'Lj1g0002823' => 'lja', 'Lj3C1074T6' => 'lonja', 'Lj4A212T28' => 'lonja', 'Lj4g0005516' => 'lja', 'Lj4g0013705' => 'lja', 'Lj4g0027865' => 'lja', 'Lj5C92G16' => 'lonja', 'Lj5C92T12' => 'lonja', 'Lj7C596T3' => 'lonja', 'Lj9A446G59' => 'lonja', 'Lj9A482G21' => 'lonja', 'Lsat_1_v5_gn_1_28261' => 'lsa', 'Lsat_1_v5_gn_1_28281' => 'lsa', 'Lsat_1_v5_gn_1_32721' => 'lsa', 'Lsat_1_v5_gn_4_151760' => 'lsa', 'Lsat_1_v5_gn_4_2120' => 'lsa', 'Lsat_1_v5_gn_4_75761' => 'lsa', 'Lsat_1_v5_gn_5_10920' => 'lsa', 'Manes.02G099900' => 'mes', 'Manes.11G096200' => 'mes', 'Manes.12G007200' => 'mes', 'Manes.14G048300' => 'mes', 'Manes.17G114700' => 'mes', 'Mapoly0002s0070' => 'mpo', 'Mapoly0029s0099' => 'mpo', 'MBI07_g24742_MAGBIO' => 'mbi', 'MBI10_g27988_MAGBIO' => 'mbi', 'MBI11_g13057_MAGBIO' => 'mbi', 'MD02G1137200' => 'mdo', 'MD06G1137200' => 'mdo', 'MD07G1122300' => 'mdo', 'MD09G1078200' => 'mdo', 'MD13G1123700' => 'mdo', 'MD14G1151900' => 'mdo', 'MD17G1030900' => 'mdo', 'MD17G1068200' => 'mdo', 'MD17G1068600' => 'mdo', 'Medtr3g077540' => 'mtr', 'Medtr4g105530' => 'mtr', 'Medtr8g076580' => 'mtr', 'Medtr8g076590' => 'mtr', 'Medtr8g096410' => 'mtr', 'MELO3C016411.2' => 'cme', 'MELO3C017780.2' => 'cme', 'MELO3C022560.2' => 'cme', 'MELO3C026187.2' => 'cme', 'MELO3C026286.2' => 'cme', 'MELO3C032854.2' => 'cme', 'Migut.H02495' => 'egut', 'Migut.I00561' => 'egut', 'Migut.K01015' => 'egut', 'Migut.K01016' => 'egut', 'Migut.L00743' => 'egut', 'Migut.L00744' => 'egut', 'Migut.L00746' => 'egut', 'Migut.L00798' => 'egut', 'Migut.L00799' => 'egut', 'Migut.N02096' => 'egut', 'MSTRG.11259' => 'ama', 'MSTRG.23142' => 'ama', 'MSTRG.2499' => 'ama', 'Nitab4.5_0000003g0730' => 'nta', 'Nitab4.5_0000137g0020' => 'nta', 'Nitab4.5_0000721g0210' => 'nta', 'Nitab4.5_0000723g0050' => 'nta', 'Nitab4.5_0000913g0070' => 'nta', 'Nitab4.5_0001332g0040' => 'nta', 'Nitab4.5_0001771g0050' => 'nta', 'Nitab4.5_0001918g0050' => 'nta', 'Nitab4.5_0002686g0030' => 'nta', 'Nitab4.5_0003156g0020' => 'nta', 'Nitab4.5_0003383g0040' => 'nta', 'Nitab4.5_0003918g0010' => 'nta', 'Nitab4.5_0006760g0010' => 'nta', 'Nn1g05981' => 'nnu', 'Nn1g06288' => 'nnu', 'Nn3g16371' => 'nnu', 'Nn3g16786' => 'nnu', 'Nn4g22232' => 'nnu', 'Oeu005144.1' => 'oeu', 'Oeu005145.1' => 'oeu', 'Oeu011348.1' => 'oeu', 'Oeu016415.1' => 'oeu', 'Oeu023501.1' => 'oeu', 'Oeu044473.1' => 'oeu', 'Oeu048892.2' => 'oeu', 'Os01g0549200' => 'osa', 'Os02g0469300' => 'osa', 'Os04g0311100' => 'osa', 'Os06g0474900' => 'osa', 'Os10g0181700' => 'osa', 'Os11g0454800' => 'osa', 'Peaxi162Scf00037g00714' => 'pax', 'Peaxi162Scf00084g01217' => 'pax', 'Peaxi162Scf00257g00217' => 'pax', 'Peaxi162Scf00516g00215' => 'pax', 'Peaxi162Scf00689g00123' => 'pax', 'PGR044G2719' => 'pgr', 'PGR083G1360' => 'pgr', 'PGR102G2849' => 'pgr', 'PGR119G2534' => 'pgr', 'PGSC0003DMG400003538' => 'stu', 'PGSC0003DMG400028138' => 'stu', 'PGSC0003DMG400031732' => 'stu', 'PGSC0003DMG400038165' => 'stu', 'Phvul.002G284600' => 'pvu', 'Phvul.003G258200' => 'pvu', 'Phvul.009G176500' => 'pvu', 'Potri.003G167201' => 'ptr', 'Potri.005G118400' => 'ptr', 'Potri.012G089000' => 'ptr', 'Potri.012G102800' => 'ptr', 'Potri.015G079400' => 'ptr', 'Potri.015G100900' => 'ptr', 'Pp3c14_9810' => 'ppa', 'Pp3c15_10450' => 'ppa', 'Pp3c20_19150' => 'ppa', 'Pp3c23_12740' => 'ppa', 'Pp3c23_6310' => 'ppa', 'Pp3c24_3720' => 'ppa', 'Pp3c27_2580' => 'ppa', 'Pp3c9_8990' => 'ppa', 'PRCOL_00002854' => 'pco', 'Prupe.1G221200' => 'ppe', 'Prupe.3G289000' => 'ppe', 'Prupe.5G147000' => 'ppe', 'Prupe.6G157300' => 'ppe', 'Prupe.7G163400' => 'ppe', 'Psat0s2177g0040' => 'psa', 'Psat3g174760' => 'psa', 'Psat3g192160' => 'psa', 'Psat4g058520' => 'psa', 'Psat4g096840' => 'psa', 'Psat7g037320' => 'psa', 'PSO017G1274' => 'pso', 'PSO017G5166' => 'pso', 'PSO063G4558' => 'pso', 'PSO170G4458' => 'pso', 'PSO170G5005' => 'pso', 'PSO210G6156' => 'pso', 'PSO210G6635' => 'pso', 'PSO210G7397' => 'pso', 'PSO210G7700' => 'pso', 'PSO455G0035' => 'pso', 'PSO455G0180' => 'pso', 'PSO478G4515' => 'pso', 'PSO832G1305' => 'pso', 'PSO832G3489' => 'pso', 'QL02p075247' => 'qlo', 'QL03p051148' => 'qlo', 'QL05p010313' => 'qlo', 'QL06p034627' => 'qlo', 'QL10p001889' => 'qlo', 'QL10p010846' => 'qlo', 'RcHm_v2.0_Chr1g0350621' => 'rch', 'RcHm_v2.0_Chr1g0350641' => 'rch', 'RcHm_v2.0_Chr2g0092891' => 'rch', 'RcHm_v2.0_Chr2g0100251' => 'rch', 'RcHm_v2.0_Chr2g0158661' => 'rch', 'RcHm_v2.0_Chr2g0172741' => 'rch', 'RcHm_v2.0_Chr4g0429571' => 'rch', 'RcHm_v2.0_Chr5g0042471' => 'rch', 'RcHm_v2.0_Chr7g0189451' => 'rch', 'Rhsim08G0052000' => 'rsi', 'Rhsim08G0174400' => 'rsi', 'Rhsim08G0193200' => 'rsi', 'Rhsim10G0214800' => 'rsi', 'Rhsim10G0214900' => 'rsi', 'Rhsim10G0215000' => 'rsi', 'Rhsim12G0022900' => 'rsi', 'Rhsim12G0177500' => 'rsi', 'Rhsim12G0177700' => 'rsi', 'Sabra03G0122600' => 'sbr', 'Sabra05G0097400' => 'sbr', 'Sabra12G0064100' => 'sbr', 'Sabra15G0121300' => 'sbr', 'SalBow2G0642' => 'sbo', 'SalBow5G2667' => 'sbo', 'SalBow5G4873' => 'sbo', 'SalBow8G2395' => 'sbo', 'Sc03g0003290' => 'sci', 'Sc10g0010130' => 'sci', 'Sc22g0003650' => 'sci', 'Sed0001603' => 'sed', 'Sed0004259' => 'sed', 'Sed0006789' => 'sed', 'Sed0011838' => 'sed', 'Sed0012964' => 'sed', 'Sed0016383' => 'sed', 'Sed0019010' => 'sed', 'Sed0020188' => 'sed', 'SEGI_04702' => 'sgi', 'SEGI_17231' => 'sgi', 'SEGI_18877' => 'sgi', 'SEGI_25196' => 'sgi', 'SEGI_25515' => 'sgi', 'SEGI_28445' => 'sgi', 'SEGI_37452' => 'sgi', 'SGA_v2.0_scaffold188G40336' => 'sas', 'SGA_v2.0_scaffold228G43247' => 'sas', 'SGA_v2.0_scaffold280G46853' => 'sas', 'SGA_v2.0_scaffold34G13808' => 'sas', 'SGA_v2.0_scaffold40G15576' => 'sas', 'SGA_v2.0_scaffold611G53188' => 'sas', 'SGA_v2.0_scaffold78G25461' => 'sas', 'SGA_v2.0_scaffold90G27888' => 'sas', 'SHI08601' => 'shi', 'SHI08606' => 'shi', 'SHI17117' => 'shi', 'SHI17119' => 'shi', 'SMO118G0201' => 'smo', 'SMO169G0247' => 'smo', 'SMO176G0006' => 'smo', 'SMO176G0015' => 'smo', 'SMO202G0006' => 'smo', 'SMO240G0050' => 'smo', 'SMO286G0009' => 'smo', 'SMO338G0033' => 'smo', 'SMO356G0533' => 'smo', 'SMO364G0382' => 'smo', 'SMO367G0166' => 'smo', 'SMO367G1098' => 'smo', 'Solyc01g009920.3' => 'sly', 'Solyc01g099300.3' => 'sly', 'Solyc02g084700.3' => 'sly', 'Solyc03g097520.3' => 'sly', 'Solyc06g071580.3' => 'sly', 'Solyc10g081760.3' => 'sly', 'Sopen01g005480' => 'spe', 'Sopen01g042850' => 'spe', 'Sopen02g029370' => 'spe', 'Sopen03g028280' => 'spe', 'Sopen06g027870' => 'spe', 'Sopen10g032270' => 'spe', 'Sp5g18180' => 'spa', 'Sp6g12880' => 'spa', 'Sp6g30850' => 'spa', 'Sp7g22960' => 'spa', 'Sp7g34010' => 'spa', 'SpUn1326_0010' => 'spa', 'TAR371G0242' => 'tar', 'TAR622G0638' => 'tar', 'TAR628G1548' => 'tar', 'TAR629G1079' => 'tar', 'TAR629G3413' => 'tar', 'THA.LOC104804249' => 'tha', 'THA.LOC104808315' => 'tha', 'THA.LOC104809238' => 'tha', 'THA.LOC104825484' => 'tha', 'Thecc.01G025500' => 'tca', 'Thecc.03G015800' => 'tca', 'Thecc.03G018000' => 'tca', 'Thecc.03G134800' => 'tca', 'Thecc.04G014700' => 'tca', 'Thhalv10006991m.g' => 'esa', 'Thhalv10012707m.g' => 'esa', 'Thhalv10015739m.g' => 'esa', 'Thhalv10024553m.g' => 'esa', 'Thhalv10024673m.g' => 'esa', 'Thhalv10029187m.g' => 'esa', 'TPR.G12971' => 'tpr', 'TPR.G29396' => 'tpr', 'TPR.G33376' => 'tpr', 'TPR.G35508' => 'tpr', 'TPR.G35516' => 'tpr', 'TPR.G37317' => 'tpr', 'TPR.G37389' => 'tpr', 'TPR.G37523' => 'tpr', 'TPR.G559' => 'tpr', 'TWI14G0070' => 'twi', 'TWI14G0729' => 'twi', 'TWI18G0596' => 'twi', 'TWI39G0780' => 'twi', 'TWI39G0850' => 'twi', 'TWI73G1052' => 'twi', 'unitig_52.g17485' => 'ugi', 'unitig_61.g26355' => 'ugi', 'vmacro01040' => 'vma', 'vmacro16731' => 'vma', 'vmacro18270' => 'vma', 'vmacro19142' => 'vma', 'vmacro19407' => 'vma', 'vmacro19408' => 'vma', 'vmacro21899' => 'vma', 'vmacro21900' => 'vma', 'vmacro21901' => 'vma', 'VMungo0251G0490' => 'vmu', 'VMungo0251G1748' => 'vmu', 'VMungo1309G0421' => 'vmu', 'Zm00001eb086500' => 'zma', 'Zm00001eb150680' => 'zma', 'Zm00001eb162330' => 'zma', 'Zm00001eb203130' => 'zma', 'Zm00001eb369480' => 'zma', 'Zm00001eb382340' => 'zma', 'Zm00001eb416360' => 'zma' ), 'gf_id' => 'HOM05D000902', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000902' ), 'data_identifier' => 'HOM05D000902', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000902', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '663', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02470' => 'bna', 'A01p16260' => 'bna', 'A02p01680' => 'bna', 'A03p16600' => 'bna', 'A03p55660' => 'bna', 'A03p64160' => 'bna', 'A03p64170' => 'bna', 'A08p31900' => 'bna', 'A09p59530' => 'bna', 'A10p08230' => 'bna', 'A10p25090' => 'bna', 'Aa31LG3G7100' => 'aar', 'Aa31LG3G7110' => 'aar', 'Aa31LG6G13160' => 'aar', 'Aa31LG7G10770' => 'aar', 'Aa31LG7G3830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2723' => 'aag', 'Actinidia08045' => 'ach', 'Actinidia08888' => 'ach', 'Actinidia18333' => 'ach', 'Actinidia19334' => 'ach', 'Actinidia25552' => 'ach', 'Actinidia26089' => 'ach', 'Actinidia30615' => 'ach', 'Actinidia30616' => 'ach', 'Actinidia33083' => 'ach', 'Actinidia35762' => 'ach', 'Ah.02g110620' => 'amhyb', 'Ah.11g046390' => 'amhyb', 'AL1G31670' => 'aly', 'AL6G23730' => 'aly', 'AL7G14740' => 'aly', 'AL7G14750' => 'aly', 'AL7G14760' => 'aly', 'AL7G28220' => 'aly', 'AL8G24940' => 'aly', 'Aqoxy3G01665' => 'aox', 'Aqoxy3G02853' => 'aox', 'Aqoxy5G01513' => 'aox', 'Aqoxy5G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8SKA4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ75LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKDA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0LJZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7REX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZP4YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWX7I5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2QKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS0L9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPCD8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q161UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC7XCF' => 'arhy', 'AT1G19100' => 'ath', 'AT4G24970' => 'ath', 'AT4G36270' => 'ath', 'AT4G36280' => 'ath', 'AT4G36290' => 'ath', 'AT5G13130' => 'ath', 'AT5G50780' => 'ath', 'ATR0582G266' => 'atr', 'ATR0661G195' => 'atr', 'ATR1152G031' => 'atr', 'Atru.chr11.2382' => 'acertr', 'Atru.chr12.2337' => 'acertr', 'Atru.chr3.744' => 'acertr', 'Atru.chr6.1870' => 'acertr', 'Atru.chr9.2515' => 'acertr', 'AUR62004120' => 'cqu', 'AUR62005667' => 'cqu', 'AUR62007634' => 'cqu', 'AUR62008186' => 'cqu', 'AUR62008187' => 'cqu', 'AUR62008188' => 'cqu', 'AUR62027954' => 'cqu', 'AUR62028766' => 'cqu', 'AUR62028767' => 'cqu', 'AUR62028768' => 'cqu', 'AUR62028886' => 'cqu', 'AUR62029563' => 'cqu', 'AUR62038832' => 'cqu', 'BcaB01g04149' => 'bca', 'BcaB03g12940' => 'bca', 'BcaB03g13090' => 'bca', 'BcaB03g14466' => 'bca', 'BcaB05g24035' => 'bca', 'BcaC01g06050' => 'bca', 'BcaC04g19148' => 'bca', 'BcaC04g20761' => 'bca', 'BcaC06g32845' => 'bca', 'BcaC07g41274' => 'bca', 'BcaC09g50827' => 'bca', 'BcaNung00741' => 'bca', 'BcaNung00742' => 'bca', 'BcaNung01859' => 'bca', 'BcaNung03985' => 'bca', 'BcaNung03989' => 'bca', 'BcaNung05661' => 'bca', 'BolC1t00257H' => 'bol', 'BolC1t01956H' => 'bol', 'BolC2t06534H' => 'bol', 'BolC3t14334H' => 'bol', 'BolC5t30451H' => 'bol', 'BolC7t45880H' => 'bol', 'BolC7t46586H' => 'bol', 'BolC8t49301H' => 'bol', 'BolC8t51837H' => 'bol', 'BolC9t56822H' => 'bol', 'BolC9t59235H' => 'bol', 'BraA01t00234Z' => 'bra', 'BraA01t01563Z' => 'bra', 'BraA02t05147Z' => 'bra', 'BraA03t10947Z' => 'bra', 'BraA03t14633Z' => 'bra', 'BraA08t35112Z' => 'bra', 'BraA09t41330Z' => 'bra', 'BraA10t44570Z' => 'bra', 'C01p02670' => 'bna', 'C01p20260' => 'bna', 'C02p05890' => 'bna', 'C03p19530' => 'bna', 'C05p17470' => 'bna', 'C07p53900' => 'bna', 'C07p61630' => 'bna', 'C08p16800' => 'bna', 'C08p42810' => 'bna', 'C09p39480' => 'bna', 'C09p63980' => 'bna', 'CAN.G1001.7' => 'can', 'CAN.G1034.55' => 'can', 'CAN.G143.7' => 'can', 'CAN.G3340.1' => 'can', 'CAN.G358.19' => 'can', 'CAN.G373.2' => 'can', 'CAN.G674.16' => 'can', 'CAN.G674.17' => 'can', 'CAN.G674.18' => 'can', 'CAN.G732.2' => 'can', 'CAN.G732.3' => 'can', 'CAN.G993.39' => 'can', 'CANSAT01G2052' => 'cansat', 'CANSAT80G0070' => 'cansat', 'CANSAT80G0483' => 'cansat', 'CANSAT80G0625' => 'cansat', 'CARHR019690' => 'chi', 'CARHR080280' => 'chi', 'CARHR152750' => 'chi', 'CARHR152760' => 'chi', 'CARHR152770' => 'chi', 'CARHR200340' => 'chi', 'CARHR232370' => 'chi', 'CARHR244670' => 'chi', 'CARHR244680' => 'chi', 'CARHR257520' => 'chi', 'Carub.0001s1872' => 'cru', 'Carub.0006s1130' => 'cru', 'Carub.0007s0396' => 'cru', 'Carub.0007s0397' => 'cru', 'Carub.0007s1608' => 'cru', 'Carub.0008s1068' => 'cru', 'Carub.0008s1077' => 'cru', 'Ca_16158_v3' => 'car', 'Ca_17571_v3' => 'car', 'Ca_21936_v3' => 'car', 'Ca_22350_v3' => 'car', 'CBR_g22445' => 'cbr', 'CBR_g26290' => 'cbr', 'Cc04_g09610' => 'ccan', 'Cc04_g12280' => 'ccan', 'Cc07_g10230' => 'ccan', 'CDE02G0093' => 'cde', 'CDE02G0701' => 'cde', 'CDE04G1050' => 'cde', 'CDE05G1833' => 'cde', 'CDE05G3058' => 'cde', 'CDE05G3380' => 'cde', 'CDE06G0536' => 'cde', 'Cfa006923' => 'cfa', 'Cfa009402' => 'cfa', 'Cfa018751' => 'cfa', 'Cfa019164' => 'cfa', 'Cfa022935' => 'cfa', 'Ciclev10019081m.g' => 'ccl', 'Ciclev10025076m.g' => 'ccl', 'Ciclev10030712m.g' => 'ccl', 'Ciclev10033760m.g' => 'ccl', 'CiPaw.05G105600' => 'cil', 'CiPaw.08G136700' => 'cil', 'CiPaw.11G003900' => 'cil', 'CiPaw.11G023700' => 'cil', 'CiPaw.12G003700' => 'cil', 'ClCG06G017100' => 'cla', 'ClCG06G018110' => 'cla', 'ClCG07G008800' => 'cla', 'ClCG07G015330' => 'cla', 'COL.COLO4_13698' => 'col', 'COL.COLO4_16659' => 'col', 'COL.COLO4_21986' => 'col', 'COL.COLO4_24049' => 'col', 'COL.COLO4_29061' => 'col', 'COL.COLO4_29075' => 'col', 'COL.COLO4_30094' => 'col', 'Cpa.g.c33689' => 'cpa', 'Cpa.g.sc108.39' => 'cpa', 'Cpa.g.sc108.41' => 'cpa', 'Cpa.g.sc1163.1' => 'cpa', 'Cpa.g.sc4.155' => 'cpa', 'Cpa.g.sc6.194' => 'cpa', 'CsaV3_1G000340' => 'csa', 'CsaV3_1G001400' => 'csa', 'CsaV3_4G002220' => 'csa', 'CsaV3_4G005370' => 'csa', 'CSS0007487' => 'camsi', 'CSS0008066' => 'camsi', 'CSS0009120' => 'camsi', 'CSS0015512' => 'camsi', 'CSS0022409' => 'camsi', 'CSS0025358' => 'camsi', 'CSS0044547' => 'camsi', 'DCAR_013057' => 'dca', 'DCAR_015058' => 'dca', 'DCAR_016027' => 'dca', 'DCAR_017327' => 'dca', 'DCAR_020743' => 'dca', 'DCAR_026157' => 'dca', 'DCAR_032339' => 'dca', 'DCAR_032340' => 'dca', 'Dinv11200' => 'din', 'Dinv11201' => 'din', 'Dinv20631' => 'din', 'Dinv23182' => 'din', 'Dinv33466' => 'din', 'Dinv33583' => 'din', 'Dinv38565' => 'din', 'Duzib068G0200' => 'dzi', 'Duzib147G0132' => 'dzi', 'Duzib147G0635' => 'dzi', 'Duzib205G1670' => 'dzi', 'Duzib251G0606' => 'dzi', 'ECA232G3336' => 'eca', 'ECA232G3763' => 'eca', 'ECA232G4845' => 'eca', 'ECA234G1607' => 'eca', 'ECA246G0932' => 'eca', 'ECA247G0781' => 'eca', 'ECA247G1932' => 'eca', 'ECA247G2079' => 'eca', 'ECA247G3338' => 'eca', 'ECA247G4115' => 'eca', 'EL10Ac3g06552' => 'bvu', 'EL10Ac5g10721' => 'bvu', 'EL10Ac5g10722' => 'bvu', 'EL10Ac5g10723' => 'bvu', 'EL10Ac5g11361' => 'bvu', 'EL10Ac6g13553' => 'bvu', 'EL10As8g23872' => 'bvu', 'Eucgr.B00250' => 'egr', 'Eucgr.B00251' => 'egr', 'Eucgr.B03533' => 'egr', 'Eucgr.I02381' => 'egr', 'Eucgr.K02700' => 'egr', 'FAN02G0174' => 'fan', 'FAN02G3146' => 'fan', 'FAN04G1672' => 'fan', 'FAN04G2273' => 'fan', 'FAN05G2791' => 'fan', 'FAN05G4035' => 'fan', 'FAN07G0834' => 'fan', 'FAN08G1198' => 'fan', 'FAN09G4182' => 'fan', 'FAN12G0496' => 'fan', 'FAN13G1027' => 'fan', 'FAN13G2951' => 'fan', 'FAN14G0705' => 'fan', 'FAN14G0720' => 'fan', 'FAN17G0201' => 'fan', 'FAN17G2665' => 'fan', 'FAN18G1456' => 'fan', 'FAN18G1525' => 'fan', 'FAN18G3500' => 'fan', 'FAN28G2670' => 'fan', 'FvH4_1g12391' => 'fve', 'FvH4_4g23220' => 'fve', 'FvH4_5g08810' => 'fve', 'FvH4_5g28960' => 'fve', 'FvH4_6g42820' => 'fve', 'FvH4_6g51110' => 'fve', 'Glyma.02G051802' => 'gma', 'Glyma.04G185300' => 'gma', 'Glyma.05G202900' => 'gma', 'Glyma.08G010300' => 'gma', 'Glyma.16G131900' => 'gma', 'Glyma.17G087900' => 'gma', 'Gohir.A07G048600' => 'ghi', 'Gohir.A11G179000' => 'ghi', 'Gohir.A12G140900' => 'ghi', 'Gohir.A12G140950' => 'ghi', 'Gohir.A12G191700' => 'ghi', 'Gohir.A13G086300' => 'ghi', 'Gohir.D07G052900' => 'ghi', 'Gohir.D11G186600' => 'ghi', 'Gohir.D12G145575' => 'ghi', 'Gohir.D12G145650' => 'ghi', 'Gohir.D12G145725' => 'ghi', 'Gohir.D12G194050' => 'ghi', 'Gohir.D13G091800' => 'ghi', 'Gorai.001G055900' => 'gra', 'Gorai.007G198400' => 'gra', 'Gorai.008G157000' => 'gra', 'Gorai.008G157100' => 'gra', 'Gorai.008G208700' => 'gra', 'Gorai.010G138700' => 'gra', 'GSVIVG01000977001' => 'vvi', 'GSVIVG01007708001' => 'vvi', 'GSVIVG01008587001' => 'vvi', 'GSVIVG01018849001' => 'vvi', 'GSVIVG01032432001' => 'vvi', 'HanXRQChr02g0034131' => 'han', 'HanXRQChr02g0035981' => 'han', 'HanXRQChr02g0035991' => 'han', 'HanXRQChr05g0155611' => 'han', 'HanXRQChr05g0155621' => 'han', 'HanXRQChr08g0236501' => 'han', 'HanXRQChr09g0261321' => 'han', 'HanXRQChr09g0272081' => 'han', 'HanXRQChr10g0310741' => 'han', 'HanXRQChr11g0325591' => 'han', 'HanXRQChr12g0385691' => 'han', 'HanXRQChr13g0387801' => 'han', 'HanXRQChr15g0463011' => 'han', 'Haze_03826' => 'cav', 'Haze_03827' => 'cav', 'Haze_07183' => 'cav', 'Haze_07537' => 'cav', 'Haze_07539' => 'cav', 'Haze_12461' => 'cav', 'Haze_16115' => 'cav', 'Haze_16808' => 'cav', 'Haze_18531' => 'cav', 'Hma1.2p1_0046F.1_g026700' => 'hma', 'Hma1.2p1_0046F.1_g026710' => 'hma', 'Hma1.2p1_0168F.1_g074340' => 'hma', 'Hma1.2p1_0266F.1_g107030' => 'hma', 'Hma1.2p1_0266F.1_g107060' => 'hma', 'Hma1.2p1_0275F.1_g110510' => 'hma', 'Hma1.2p1_0592F.1_g185490' => 'hma', 'Hma1.2p1_0592F.1_g185500' => 'hma', 'Hma1.2p1_0592F.1_g185510' => 'hma', 'Hma1.2p1_0592F.1_g185520' => 'hma', 'Hma1.2p1_0592F.1_g185530' => 'hma', 'Hma1.2p1_0818F.1_g223450' => 'hma', 'HPP92_009708' => 'vpl', 'HPP92_009793' => 'vpl', 'HPP92_009796' => 'vpl', 'HPP92_009797' => 'vpl', 'HPP92_014940' => 'vpl', 'HPP92_014988' => 'vpl', 'Hund02463' => 'sun', 'Hund02760' => 'sun', 'Hund05071' => 'sun', 'Hund10108' => 'sun', 'Hund11204' => 'sun', 'Hund14016' => 'sun', 'Hund16464' => 'sun', 'Lalb_Chr09g0333391' => 'lal', 'Lalb_Chr11g0070461' => 'lal', 'Lalb_Chr12g0201671' => 'lal', 'Lalb_Chr13g0297161' => 'lal', 'Lj1g0002823' => 'lja', 'Lj3C1074T6' => 'lonja', 'Lj4A212T28' => 'lonja', 'Lj4g0005516' => 'lja', 'Lj4g0013705' => 'lja', 'Lj4g0027865' => 'lja', 'Lj5C92G16' => 'lonja', 'Lj5C92T12' => 'lonja', 'Lj7C596T3' => 'lonja', 'Lj9A446G59' => 'lonja', 'Lj9A482G21' => 'lonja', 'Lsat_1_v5_gn_1_28261' => 'lsa', 'Lsat_1_v5_gn_1_28281' => 'lsa', 'Lsat_1_v5_gn_1_32721' => 'lsa', 'Lsat_1_v5_gn_4_151760' => 'lsa', 'Lsat_1_v5_gn_4_2120' => 'lsa', 'Lsat_1_v5_gn_4_75761' => 'lsa', 'Lsat_1_v5_gn_5_10920' => 'lsa', 'Manes.02G099900' => 'mes', 'Manes.11G096200' => 'mes', 'Manes.12G007200' => 'mes', 'Manes.14G048300' => 'mes', 'Manes.17G114700' => 'mes', 'Mapoly0002s0070' => 'mpo', 'Mapoly0029s0099' => 'mpo', 'MBI07_g24742_MAGBIO' => 'mbi', 'MBI10_g27988_MAGBIO' => 'mbi', 'MBI11_g13057_MAGBIO' => 'mbi', 'MD02G1137200' => 'mdo', 'MD06G1137200' => 'mdo', 'MD07G1122300' => 'mdo', 'MD09G1078200' => 'mdo', 'MD13G1123700' => 'mdo', 'MD14G1151900' => 'mdo', 'MD17G1030900' => 'mdo', 'MD17G1068200' => 'mdo', 'MD17G1068600' => 'mdo', 'Medtr3g077540' => 'mtr', 'Medtr4g105530' => 'mtr', 'Medtr8g076580' => 'mtr', 'Medtr8g076590' => 'mtr', 'Medtr8g096410' => 'mtr', 'MELO3C016411.2' => 'cme', 'MELO3C017780.2' => 'cme', 'MELO3C022560.2' => 'cme', 'MELO3C026187.2' => 'cme', 'MELO3C026286.2' => 'cme', 'MELO3C032854.2' => 'cme', 'Migut.H02495' => 'egut', 'Migut.I00561' => 'egut', 'Migut.K01015' => 'egut', 'Migut.K01016' => 'egut', 'Migut.L00743' => 'egut', 'Migut.L00744' => 'egut', 'Migut.L00746' => 'egut', 'Migut.L00798' => 'egut', 'Migut.L00799' => 'egut', 'Migut.N02096' => 'egut', 'MSTRG.11259' => 'ama', 'MSTRG.23142' => 'ama', 'MSTRG.2499' => 'ama', 'Nitab4.5_0000003g0730' => 'nta', 'Nitab4.5_0000137g0020' => 'nta', 'Nitab4.5_0000721g0210' => 'nta', 'Nitab4.5_0000723g0050' => 'nta', 'Nitab4.5_0000913g0070' => 'nta', 'Nitab4.5_0001332g0040' => 'nta', 'Nitab4.5_0001771g0050' => 'nta', 'Nitab4.5_0001918g0050' => 'nta', 'Nitab4.5_0002686g0030' => 'nta', 'Nitab4.5_0003156g0020' => 'nta', 'Nitab4.5_0003383g0040' => 'nta', 'Nitab4.5_0003918g0010' => 'nta', 'Nitab4.5_0006760g0010' => 'nta', 'Nn1g05981' => 'nnu', 'Nn1g06288' => 'nnu', 'Nn3g16371' => 'nnu', 'Nn3g16786' => 'nnu', 'Nn4g22232' => 'nnu', 'Oeu005144.1' => 'oeu', 'Oeu005145.1' => 'oeu', 'Oeu011348.1' => 'oeu', 'Oeu016415.1' => 'oeu', 'Oeu023501.1' => 'oeu', 'Oeu044473.1' => 'oeu', 'Oeu048892.2' => 'oeu', 'Os01g0549200' => 'osa', 'Os02g0469300' => 'osa', 'Os04g0311100' => 'osa', 'Os06g0474900' => 'osa', 'Os10g0181700' => 'osa', 'Os11g0454800' => 'osa', 'Peaxi162Scf00037g00714' => 'pax', 'Peaxi162Scf00084g01217' => 'pax', 'Peaxi162Scf00257g00217' => 'pax', 'Peaxi162Scf00516g00215' => 'pax', 'Peaxi162Scf00689g00123' => 'pax', 'PGR044G2719' => 'pgr', 'PGR083G1360' => 'pgr', 'PGR102G2849' => 'pgr', 'PGR119G2534' => 'pgr', 'PGSC0003DMG400003538' => 'stu', 'PGSC0003DMG400028138' => 'stu', 'PGSC0003DMG400031732' => 'stu', 'PGSC0003DMG400038165' => 'stu', 'Phvul.002G284600' => 'pvu', 'Phvul.003G258200' => 'pvu', 'Phvul.009G176500' => 'pvu', 'Potri.003G167201' => 'ptr', 'Potri.005G118400' => 'ptr', 'Potri.012G089000' => 'ptr', 'Potri.012G102800' => 'ptr', 'Potri.015G079400' => 'ptr', 'Potri.015G100900' => 'ptr', 'Pp3c14_9810' => 'ppa', 'Pp3c15_10450' => 'ppa', 'Pp3c20_19150' => 'ppa', 'Pp3c23_12740' => 'ppa', 'Pp3c23_6310' => 'ppa', 'Pp3c24_3720' => 'ppa', 'Pp3c27_2580' => 'ppa', 'Pp3c9_8990' => 'ppa', 'PRCOL_00002854' => 'pco', 'Prupe.1G221200' => 'ppe', 'Prupe.3G289000' => 'ppe', 'Prupe.5G147000' => 'ppe', 'Prupe.6G157300' => 'ppe', 'Prupe.7G163400' => 'ppe', 'Psat0s2177g0040' => 'psa', 'Psat3g174760' => 'psa', 'Psat3g192160' => 'psa', 'Psat4g058520' => 'psa', 'Psat4g096840' => 'psa', 'Psat7g037320' => 'psa', 'PSO017G1274' => 'pso', 'PSO017G5166' => 'pso', 'PSO063G4558' => 'pso', 'PSO170G4458' => 'pso', 'PSO170G5005' => 'pso', 'PSO210G6156' => 'pso', 'PSO210G6635' => 'pso', 'PSO210G7397' => 'pso', 'PSO210G7700' => 'pso', 'PSO455G0035' => 'pso', 'PSO455G0180' => 'pso', 'PSO478G4515' => 'pso', 'PSO832G1305' => 'pso', 'PSO832G3489' => 'pso', 'QL02p075247' => 'qlo', 'QL03p051148' => 'qlo', 'QL05p010313' => 'qlo', 'QL06p034627' => 'qlo', 'QL10p001889' => 'qlo', 'QL10p010846' => 'qlo', 'RcHm_v2.0_Chr1g0350621' => 'rch', 'RcHm_v2.0_Chr1g0350641' => 'rch', 'RcHm_v2.0_Chr2g0092891' => 'rch', 'RcHm_v2.0_Chr2g0100251' => 'rch', 'RcHm_v2.0_Chr2g0158661' => 'rch', 'RcHm_v2.0_Chr2g0172741' => 'rch', 'RcHm_v2.0_Chr4g0429571' => 'rch', 'RcHm_v2.0_Chr5g0042471' => 'rch', 'RcHm_v2.0_Chr7g0189451' => 'rch', 'Rhsim08G0052000' => 'rsi', 'Rhsim08G0174400' => 'rsi', 'Rhsim08G0193200' => 'rsi', 'Rhsim10G0214800' => 'rsi', 'Rhsim10G0214900' => 'rsi', 'Rhsim10G0215000' => 'rsi', 'Rhsim12G0022900' => 'rsi', 'Rhsim12G0177500' => 'rsi', 'Rhsim12G0177700' => 'rsi', 'Sabra03G0122600' => 'sbr', 'Sabra05G0097400' => 'sbr', 'Sabra12G0064100' => 'sbr', 'Sabra15G0121300' => 'sbr', 'SalBow2G0642' => 'sbo', 'SalBow5G2667' => 'sbo', 'SalBow5G4873' => 'sbo', 'SalBow8G2395' => 'sbo', 'Sc03g0003290' => 'sci', 'Sc10g0010130' => 'sci', 'Sc22g0003650' => 'sci', 'Sed0001603' => 'sed', 'Sed0004259' => 'sed', 'Sed0006789' => 'sed', 'Sed0011838' => 'sed', 'Sed0012964' => 'sed', 'Sed0016383' => 'sed', 'Sed0019010' => 'sed', 'Sed0020188' => 'sed', 'SEGI_04702' => 'sgi', 'SEGI_17231' => 'sgi', 'SEGI_18877' => 'sgi', 'SEGI_25196' => 'sgi', 'SEGI_25515' => 'sgi', 'SEGI_28445' => 'sgi', 'SEGI_37452' => 'sgi', 'SGA_v2.0_scaffold188G40336' => 'sas', 'SGA_v2.0_scaffold228G43247' => 'sas', 'SGA_v2.0_scaffold280G46853' => 'sas', 'SGA_v2.0_scaffold34G13808' => 'sas', 'SGA_v2.0_scaffold40G15576' => 'sas', 'SGA_v2.0_scaffold611G53188' => 'sas', 'SGA_v2.0_scaffold78G25461' => 'sas', 'SGA_v2.0_scaffold90G27888' => 'sas', 'SHI08601' => 'shi', 'SHI08606' => 'shi', 'SHI17117' => 'shi', 'SHI17119' => 'shi', 'SMO118G0201' => 'smo', 'SMO169G0247' => 'smo', 'SMO176G0006' => 'smo', 'SMO176G0015' => 'smo', 'SMO202G0006' => 'smo', 'SMO240G0050' => 'smo', 'SMO286G0009' => 'smo', 'SMO338G0033' => 'smo', 'SMO356G0533' => 'smo', 'SMO364G0382' => 'smo', 'SMO367G0166' => 'smo', 'SMO367G1098' => 'smo', 'Solyc01g009920.3' => 'sly', 'Solyc01g099300.3' => 'sly', 'Solyc02g084700.3' => 'sly', 'Solyc03g097520.3' => 'sly', 'Solyc06g071580.3' => 'sly', 'Solyc10g081760.3' => 'sly', 'Sopen01g005480' => 'spe', 'Sopen01g042850' => 'spe', 'Sopen02g029370' => 'spe', 'Sopen03g028280' => 'spe', 'Sopen06g027870' => 'spe', 'Sopen10g032270' => 'spe', 'Sp5g18180' => 'spa', 'Sp6g12880' => 'spa', 'Sp6g30850' => 'spa', 'Sp7g22960' => 'spa', 'Sp7g34010' => 'spa', 'SpUn1326_0010' => 'spa', 'TAR371G0242' => 'tar', 'TAR622G0638' => 'tar', 'TAR628G1548' => 'tar', 'TAR629G1079' => 'tar', 'TAR629G3413' => 'tar', 'THA.LOC104804249' => 'tha', 'THA.LOC104808315' => 'tha', 'THA.LOC104809238' => 'tha', 'THA.LOC104825484' => 'tha', 'Thecc.01G025500' => 'tca', 'Thecc.03G015800' => 'tca', 'Thecc.03G018000' => 'tca', 'Thecc.03G134800' => 'tca', 'Thecc.04G014700' => 'tca', 'Thhalv10006991m.g' => 'esa', 'Thhalv10012707m.g' => 'esa', 'Thhalv10015739m.g' => 'esa', 'Thhalv10024553m.g' => 'esa', 'Thhalv10024673m.g' => 'esa', 'Thhalv10029187m.g' => 'esa', 'TPR.G12971' => 'tpr', 'TPR.G29396' => 'tpr', 'TPR.G33376' => 'tpr', 'TPR.G35508' => 'tpr', 'TPR.G35516' => 'tpr', 'TPR.G37317' => 'tpr', 'TPR.G37389' => 'tpr', 'TPR.G37523' => 'tpr', 'TPR.G559' => 'tpr', 'TWI14G0070' => 'twi', 'TWI14G0729' => 'twi', 'TWI18G0596' => 'twi', 'TWI39G0780' => 'twi', 'TWI39G0850' => 'twi', 'TWI73G1052' => 'twi', 'unitig_52.g17485' => 'ugi', 'unitig_61.g26355' => 'ugi', 'vmacro01040' => 'vma', 'vmacro16731' => 'vma', 'vmacro18270' => 'vma', 'vmacro19142' => 'vma', 'vmacro19407' => 'vma', 'vmacro19408' => 'vma', 'vmacro21899' => 'vma', 'vmacro21900' => 'vma', 'vmacro21901' => 'vma', 'VMungo0251G0490' => 'vmu', 'VMungo0251G1748' => 'vmu', 'VMungo1309G0421' => 'vmu', 'Zm00001eb086500' => 'zma', 'Zm00001eb150680' => 'zma', 'Zm00001eb162330' => 'zma', 'Zm00001eb203130' => 'zma', 'Zm00001eb369480' => 'zma', 'Zm00001eb382340' => 'zma', 'Zm00001eb416360' => 'zma' ) $gf_id = 'HOM05D000902' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000902' ) $data_identifier = 'HOM05D000902' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 13, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 10, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 6, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 9, 'hma' => (int) 12, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 4, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 6, 'ppa' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 6, 'rch' => (int) 9, 'rsi' => (int) 9, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 12, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 3, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416360' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000902', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '663', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02470' => 'bna', 'A01p16260' => 'bna', 'A02p01680' => 'bna', 'A03p16600' => 'bna', 'A03p55660' => 'bna', 'A03p64160' => 'bna', 'A03p64170' => 'bna', 'A08p31900' => 'bna', 'A09p59530' => 'bna', 'A10p08230' => 'bna', 'A10p25090' => 'bna', 'Aa31LG3G7100' => 'aar', 'Aa31LG3G7110' => 'aar', 'Aa31LG6G13160' => 'aar', 'Aa31LG7G10770' => 'aar', 'Aa31LG7G3830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2723' => 'aag', 'Actinidia08045' => 'ach', 'Actinidia08888' => 'ach', 'Actinidia18333' => 'ach', 'Actinidia19334' => 'ach', 'Actinidia25552' => 'ach', 'Actinidia26089' => 'ach', 'Actinidia30615' => 'ach', 'Actinidia30616' => 'ach', 'Actinidia33083' => 'ach', 'Actinidia35762' => 'ach', 'Ah.02g110620' => 'amhyb', 'Ah.11g046390' => 'amhyb', 'AL1G31670' => 'aly', 'AL6G23730' => 'aly', 'AL7G14740' => 'aly', 'AL7G14750' => 'aly', 'AL7G14760' => 'aly', 'AL7G28220' => 'aly', 'AL8G24940' => 'aly', 'Aqoxy3G01665' => 'aox', 'Aqoxy3G02853' => 'aox', 'Aqoxy5G01513' => 'aox', 'Aqoxy5G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8SKA4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ75LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKDA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0LJZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7REX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZP4YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWX7I5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2QKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS0L9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPCD8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q161UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC7XCF' => 'arhy', 'AT1G19100' => 'ath', 'AT4G24970' => 'ath', 'AT4G36270' => 'ath', 'AT4G36280' => 'ath', 'AT4G36290' => 'ath', 'AT5G13130' => 'ath', 'AT5G50780' => 'ath', 'ATR0582G266' => 'atr', 'ATR0661G195' => 'atr', 'ATR1152G031' => 'atr', 'Atru.chr11.2382' => 'acertr', 'Atru.chr12.2337' => 'acertr', 'Atru.chr3.744' => 'acertr', 'Atru.chr6.1870' => 'acertr', 'Atru.chr9.2515' => 'acertr', 'AUR62004120' => 'cqu', 'AUR62005667' => 'cqu', 'AUR62007634' => 'cqu', 'AUR62008186' => 'cqu', 'AUR62008187' => 'cqu', 'AUR62008188' => 'cqu', 'AUR62027954' => 'cqu', 'AUR62028766' => 'cqu', 'AUR62028767' => 'cqu', 'AUR62028768' => 'cqu', 'AUR62028886' => 'cqu', 'AUR62029563' => 'cqu', 'AUR62038832' => 'cqu', 'BcaB01g04149' => 'bca', 'BcaB03g12940' => 'bca', 'BcaB03g13090' => 'bca', 'BcaB03g14466' => 'bca', 'BcaB05g24035' => 'bca', 'BcaC01g06050' => 'bca', 'BcaC04g19148' => 'bca', 'BcaC04g20761' => 'bca', 'BcaC06g32845' => 'bca', 'BcaC07g41274' => 'bca', 'BcaC09g50827' => 'bca', 'BcaNung00741' => 'bca', 'BcaNung00742' => 'bca', 'BcaNung01859' => 'bca', 'BcaNung03985' => 'bca', 'BcaNung03989' => 'bca', 'BcaNung05661' => 'bca', 'BolC1t00257H' => 'bol', 'BolC1t01956H' => 'bol', 'BolC2t06534H' => 'bol', 'BolC3t14334H' => 'bol', 'BolC5t30451H' => 'bol', 'BolC7t45880H' => 'bol', 'BolC7t46586H' => 'bol', 'BolC8t49301H' => 'bol', 'BolC8t51837H' => 'bol', 'BolC9t56822H' => 'bol', 'BolC9t59235H' => 'bol', 'BraA01t00234Z' => 'bra', 'BraA01t01563Z' => 'bra', 'BraA02t05147Z' => 'bra', 'BraA03t10947Z' => 'bra', 'BraA03t14633Z' => 'bra', 'BraA08t35112Z' => 'bra', 'BraA09t41330Z' => 'bra', 'BraA10t44570Z' => 'bra', 'C01p02670' => 'bna', 'C01p20260' => 'bna', 'C02p05890' => 'bna', 'C03p19530' => 'bna', 'C05p17470' => 'bna', 'C07p53900' => 'bna', 'C07p61630' => 'bna', 'C08p16800' => 'bna', 'C08p42810' => 'bna', 'C09p39480' => 'bna', 'C09p63980' => 'bna', 'CAN.G1001.7' => 'can', 'CAN.G1034.55' => 'can', 'CAN.G143.7' => 'can', 'CAN.G3340.1' => 'can', 'CAN.G358.19' => 'can', 'CAN.G373.2' => 'can', 'CAN.G674.16' => 'can', 'CAN.G674.17' => 'can', 'CAN.G674.18' => 'can', 'CAN.G732.2' => 'can', 'CAN.G732.3' => 'can', 'CAN.G993.39' => 'can', 'CANSAT01G2052' => 'cansat', 'CANSAT80G0070' => 'cansat', 'CANSAT80G0483' => 'cansat', 'CANSAT80G0625' => 'cansat', 'CARHR019690' => 'chi', 'CARHR080280' => 'chi', 'CARHR152750' => 'chi', 'CARHR152760' => 'chi', 'CARHR152770' => 'chi', 'CARHR200340' => 'chi', 'CARHR232370' => 'chi', 'CARHR244670' => 'chi', 'CARHR244680' => 'chi', 'CARHR257520' => 'chi', 'Carub.0001s1872' => 'cru', 'Carub.0006s1130' => 'cru', 'Carub.0007s0396' => 'cru', 'Carub.0007s0397' => 'cru', 'Carub.0007s1608' => 'cru', 'Carub.0008s1068' => 'cru', 'Carub.0008s1077' => 'cru', 'Ca_16158_v3' => 'car', 'Ca_17571_v3' => 'car', 'Ca_21936_v3' => 'car', 'Ca_22350_v3' => 'car', 'CBR_g22445' => 'cbr', 'CBR_g26290' => 'cbr', 'Cc04_g09610' => 'ccan', 'Cc04_g12280' => 'ccan', 'Cc07_g10230' => 'ccan', 'CDE02G0093' => 'cde', 'CDE02G0701' => 'cde', 'CDE04G1050' => 'cde', 'CDE05G1833' => 'cde', 'CDE05G3058' => 'cde', 'CDE05G3380' => 'cde', 'CDE06G0536' => 'cde', 'Cfa006923' => 'cfa', 'Cfa009402' => 'cfa', 'Cfa018751' => 'cfa', 'Cfa019164' => 'cfa', 'Cfa022935' => 'cfa', 'Ciclev10019081m.g' => 'ccl', 'Ciclev10025076m.g' => 'ccl', 'Ciclev10030712m.g' => 'ccl', 'Ciclev10033760m.g' => 'ccl', 'CiPaw.05G105600' => 'cil', 'CiPaw.08G136700' => 'cil', 'CiPaw.11G003900' => 'cil', 'CiPaw.11G023700' => 'cil', 'CiPaw.12G003700' => 'cil', 'ClCG06G017100' => 'cla', 'ClCG06G018110' => 'cla', 'ClCG07G008800' => 'cla', 'ClCG07G015330' => 'cla', 'COL.COLO4_13698' => 'col', 'COL.COLO4_16659' => 'col', 'COL.COLO4_21986' => 'col', 'COL.COLO4_24049' => 'col', 'COL.COLO4_29061' => 'col', 'COL.COLO4_29075' => 'col', 'COL.COLO4_30094' => 'col', 'Cpa.g.c33689' => 'cpa', 'Cpa.g.sc108.39' => 'cpa', 'Cpa.g.sc108.41' => 'cpa', 'Cpa.g.sc1163.1' => 'cpa', 'Cpa.g.sc4.155' => 'cpa', 'Cpa.g.sc6.194' => 'cpa', 'CsaV3_1G000340' => 'csa', 'CsaV3_1G001400' => 'csa', 'CsaV3_4G002220' => 'csa', 'CsaV3_4G005370' => 'csa', 'CSS0007487' => 'camsi', 'CSS0008066' => 'camsi', 'CSS0009120' => 'camsi', 'CSS0015512' => 'camsi', 'CSS0022409' => 'camsi', 'CSS0025358' => 'camsi', 'CSS0044547' => 'camsi', 'DCAR_013057' => 'dca', 'DCAR_015058' => 'dca', 'DCAR_016027' => 'dca', 'DCAR_017327' => 'dca', 'DCAR_020743' => 'dca', 'DCAR_026157' => 'dca', 'DCAR_032339' => 'dca', 'DCAR_032340' => 'dca', 'Dinv11200' => 'din', 'Dinv11201' => 'din', 'Dinv20631' => 'din', 'Dinv23182' => 'din', 'Dinv33466' => 'din', 'Dinv33583' => 'din', 'Dinv38565' => 'din', 'Duzib068G0200' => 'dzi', 'Duzib147G0132' => 'dzi', 'Duzib147G0635' => 'dzi', 'Duzib205G1670' => 'dzi', 'Duzib251G0606' => 'dzi', 'ECA232G3336' => 'eca', 'ECA232G3763' => 'eca', 'ECA232G4845' => 'eca', 'ECA234G1607' => 'eca', 'ECA246G0932' => 'eca', 'ECA247G0781' => 'eca', 'ECA247G1932' => 'eca', 'ECA247G2079' => 'eca', 'ECA247G3338' => 'eca', 'ECA247G4115' => 'eca', 'EL10Ac3g06552' => 'bvu', 'EL10Ac5g10721' => 'bvu', 'EL10Ac5g10722' => 'bvu', 'EL10Ac5g10723' => 'bvu', 'EL10Ac5g11361' => 'bvu', 'EL10Ac6g13553' => 'bvu', 'EL10As8g23872' => 'bvu', 'Eucgr.B00250' => 'egr', 'Eucgr.B00251' => 'egr', 'Eucgr.B03533' => 'egr', 'Eucgr.I02381' => 'egr', 'Eucgr.K02700' => 'egr', 'FAN02G0174' => 'fan', 'FAN02G3146' => 'fan', 'FAN04G1672' => 'fan', 'FAN04G2273' => 'fan', 'FAN05G2791' => 'fan', 'FAN05G4035' => 'fan', 'FAN07G0834' => 'fan', 'FAN08G1198' => 'fan', 'FAN09G4182' => 'fan', 'FAN12G0496' => 'fan', 'FAN13G1027' => 'fan', 'FAN13G2951' => 'fan', 'FAN14G0705' => 'fan', 'FAN14G0720' => 'fan', 'FAN17G0201' => 'fan', 'FAN17G2665' => 'fan', 'FAN18G1456' => 'fan', 'FAN18G1525' => 'fan', 'FAN18G3500' => 'fan', 'FAN28G2670' => 'fan', 'FvH4_1g12391' => 'fve', 'FvH4_4g23220' => 'fve', 'FvH4_5g08810' => 'fve', 'FvH4_5g28960' => 'fve', 'FvH4_6g42820' => 'fve', 'FvH4_6g51110' => 'fve', 'Glyma.02G051802' => 'gma', 'Glyma.04G185300' => 'gma', 'Glyma.05G202900' => 'gma', 'Glyma.08G010300' => 'gma', 'Glyma.16G131900' => 'gma', 'Glyma.17G087900' => 'gma', 'Gohir.A07G048600' => 'ghi', 'Gohir.A11G179000' => 'ghi', 'Gohir.A12G140900' => 'ghi', 'Gohir.A12G140950' => 'ghi', 'Gohir.A12G191700' => 'ghi', 'Gohir.A13G086300' => 'ghi', 'Gohir.D07G052900' => 'ghi', 'Gohir.D11G186600' => 'ghi', 'Gohir.D12G145575' => 'ghi', 'Gohir.D12G145650' => 'ghi', 'Gohir.D12G145725' => 'ghi', 'Gohir.D12G194050' => 'ghi', 'Gohir.D13G091800' => 'ghi', 'Gorai.001G055900' => 'gra', 'Gorai.007G198400' => 'gra', 'Gorai.008G157000' => 'gra', 'Gorai.008G157100' => 'gra', 'Gorai.008G208700' => 'gra', 'Gorai.010G138700' => 'gra', 'GSVIVG01000977001' => 'vvi', 'GSVIVG01007708001' => 'vvi', 'GSVIVG01008587001' => 'vvi', 'GSVIVG01018849001' => 'vvi', 'GSVIVG01032432001' => 'vvi', 'HanXRQChr02g0034131' => 'han', 'HanXRQChr02g0035981' => 'han', 'HanXRQChr02g0035991' => 'han', 'HanXRQChr05g0155611' => 'han', 'HanXRQChr05g0155621' => 'han', 'HanXRQChr08g0236501' => 'han', 'HanXRQChr09g0261321' => 'han', 'HanXRQChr09g0272081' => 'han', 'HanXRQChr10g0310741' => 'han', 'HanXRQChr11g0325591' => 'han', 'HanXRQChr12g0385691' => 'han', 'HanXRQChr13g0387801' => 'han', 'HanXRQChr15g0463011' => 'han', 'Haze_03826' => 'cav', 'Haze_03827' => 'cav', 'Haze_07183' => 'cav', 'Haze_07537' => 'cav', 'Haze_07539' => 'cav', 'Haze_12461' => 'cav', 'Haze_16115' => 'cav', 'Haze_16808' => 'cav', 'Haze_18531' => 'cav', 'Hma1.2p1_0046F.1_g026700' => 'hma', 'Hma1.2p1_0046F.1_g026710' => 'hma', 'Hma1.2p1_0168F.1_g074340' => 'hma', 'Hma1.2p1_0266F.1_g107030' => 'hma', 'Hma1.2p1_0266F.1_g107060' => 'hma', 'Hma1.2p1_0275F.1_g110510' => 'hma', 'Hma1.2p1_0592F.1_g185490' => 'hma', 'Hma1.2p1_0592F.1_g185500' => 'hma', 'Hma1.2p1_0592F.1_g185510' => 'hma', 'Hma1.2p1_0592F.1_g185520' => 'hma', 'Hma1.2p1_0592F.1_g185530' => 'hma', 'Hma1.2p1_0818F.1_g223450' => 'hma', 'HPP92_009708' => 'vpl', 'HPP92_009793' => 'vpl', 'HPP92_009796' => 'vpl', 'HPP92_009797' => 'vpl', 'HPP92_014940' => 'vpl', 'HPP92_014988' => 'vpl', 'Hund02463' => 'sun', 'Hund02760' => 'sun', 'Hund05071' => 'sun', 'Hund10108' => 'sun', 'Hund11204' => 'sun', 'Hund14016' => 'sun', 'Hund16464' => 'sun', 'Lalb_Chr09g0333391' => 'lal', 'Lalb_Chr11g0070461' => 'lal', 'Lalb_Chr12g0201671' => 'lal', 'Lalb_Chr13g0297161' => 'lal', 'Lj1g0002823' => 'lja', 'Lj3C1074T6' => 'lonja', 'Lj4A212T28' => 'lonja', 'Lj4g0005516' => 'lja', 'Lj4g0013705' => 'lja', 'Lj4g0027865' => 'lja', 'Lj5C92G16' => 'lonja', 'Lj5C92T12' => 'lonja', 'Lj7C596T3' => 'lonja', 'Lj9A446G59' => 'lonja', 'Lj9A482G21' => 'lonja', 'Lsat_1_v5_gn_1_28261' => 'lsa', 'Lsat_1_v5_gn_1_28281' => 'lsa', 'Lsat_1_v5_gn_1_32721' => 'lsa', 'Lsat_1_v5_gn_4_151760' => 'lsa', 'Lsat_1_v5_gn_4_2120' => 'lsa', 'Lsat_1_v5_gn_4_75761' => 'lsa', 'Lsat_1_v5_gn_5_10920' => 'lsa', 'Manes.02G099900' => 'mes', 'Manes.11G096200' => 'mes', 'Manes.12G007200' => 'mes', 'Manes.14G048300' => 'mes', 'Manes.17G114700' => 'mes', 'Mapoly0002s0070' => 'mpo', 'Mapoly0029s0099' => 'mpo', 'MBI07_g24742_MAGBIO' => 'mbi', 'MBI10_g27988_MAGBIO' => 'mbi', 'MBI11_g13057_MAGBIO' => 'mbi', 'MD02G1137200' => 'mdo', 'MD06G1137200' => 'mdo', 'MD07G1122300' => 'mdo', 'MD09G1078200' => 'mdo', 'MD13G1123700' => 'mdo', 'MD14G1151900' => 'mdo', 'MD17G1030900' => 'mdo', 'MD17G1068200' => 'mdo', 'MD17G1068600' => 'mdo', 'Medtr3g077540' => 'mtr', 'Medtr4g105530' => 'mtr', 'Medtr8g076580' => 'mtr', 'Medtr8g076590' => 'mtr', 'Medtr8g096410' => 'mtr', 'MELO3C016411.2' => 'cme', 'MELO3C017780.2' => 'cme', 'MELO3C022560.2' => 'cme', 'MELO3C026187.2' => 'cme', 'MELO3C026286.2' => 'cme', 'MELO3C032854.2' => 'cme', 'Migut.H02495' => 'egut', 'Migut.I00561' => 'egut', 'Migut.K01015' => 'egut', 'Migut.K01016' => 'egut', 'Migut.L00743' => 'egut', 'Migut.L00744' => 'egut', 'Migut.L00746' => 'egut', 'Migut.L00798' => 'egut', 'Migut.L00799' => 'egut', 'Migut.N02096' => 'egut', 'MSTRG.11259' => 'ama', 'MSTRG.23142' => 'ama', 'MSTRG.2499' => 'ama', 'Nitab4.5_0000003g0730' => 'nta', 'Nitab4.5_0000137g0020' => 'nta', 'Nitab4.5_0000721g0210' => 'nta', 'Nitab4.5_0000723g0050' => 'nta', 'Nitab4.5_0000913g0070' => 'nta', 'Nitab4.5_0001332g0040' => 'nta', 'Nitab4.5_0001771g0050' => 'nta', 'Nitab4.5_0001918g0050' => 'nta', 'Nitab4.5_0002686g0030' => 'nta', 'Nitab4.5_0003156g0020' => 'nta', 'Nitab4.5_0003383g0040' => 'nta', 'Nitab4.5_0003918g0010' => 'nta', 'Nitab4.5_0006760g0010' => 'nta', 'Nn1g05981' => 'nnu', 'Nn1g06288' => 'nnu', 'Nn3g16371' => 'nnu', 'Nn3g16786' => 'nnu', 'Nn4g22232' => 'nnu', 'Oeu005144.1' => 'oeu', 'Oeu005145.1' => 'oeu', 'Oeu011348.1' => 'oeu', 'Oeu016415.1' => 'oeu', 'Oeu023501.1' => 'oeu', 'Oeu044473.1' => 'oeu', 'Oeu048892.2' => 'oeu', 'Os01g0549200' => 'osa', 'Os02g0469300' => 'osa', 'Os04g0311100' => 'osa', 'Os06g0474900' => 'osa', 'Os10g0181700' => 'osa', 'Os11g0454800' => 'osa', 'Peaxi162Scf00037g00714' => 'pax', 'Peaxi162Scf00084g01217' => 'pax', 'Peaxi162Scf00257g00217' => 'pax', 'Peaxi162Scf00516g00215' => 'pax', 'Peaxi162Scf00689g00123' => 'pax', 'PGR044G2719' => 'pgr', 'PGR083G1360' => 'pgr', 'PGR102G2849' => 'pgr', 'PGR119G2534' => 'pgr', 'PGSC0003DMG400003538' => 'stu', 'PGSC0003DMG400028138' => 'stu', 'PGSC0003DMG400031732' => 'stu', 'PGSC0003DMG400038165' => 'stu', 'Phvul.002G284600' => 'pvu', 'Phvul.003G258200' => 'pvu', 'Phvul.009G176500' => 'pvu', 'Potri.003G167201' => 'ptr', 'Potri.005G118400' => 'ptr', 'Potri.012G089000' => 'ptr', 'Potri.012G102800' => 'ptr', 'Potri.015G079400' => 'ptr', 'Potri.015G100900' => 'ptr', 'Pp3c14_9810' => 'ppa', 'Pp3c15_10450' => 'ppa', 'Pp3c20_19150' => 'ppa', 'Pp3c23_12740' => 'ppa', 'Pp3c23_6310' => 'ppa', 'Pp3c24_3720' => 'ppa', 'Pp3c27_2580' => 'ppa', 'Pp3c9_8990' => 'ppa', 'PRCOL_00002854' => 'pco', 'Prupe.1G221200' => 'ppe', 'Prupe.3G289000' => 'ppe', 'Prupe.5G147000' => 'ppe', 'Prupe.6G157300' => 'ppe', 'Prupe.7G163400' => 'ppe', 'Psat0s2177g0040' => 'psa', 'Psat3g174760' => 'psa', 'Psat3g192160' => 'psa', 'Psat4g058520' => 'psa', 'Psat4g096840' => 'psa', 'Psat7g037320' => 'psa', 'PSO017G1274' => 'pso', 'PSO017G5166' => 'pso', 'PSO063G4558' => 'pso', 'PSO170G4458' => 'pso', 'PSO170G5005' => 'pso', 'PSO210G6156' => 'pso', 'PSO210G6635' => 'pso', 'PSO210G7397' => 'pso', 'PSO210G7700' => 'pso', 'PSO455G0035' => 'pso', 'PSO455G0180' => 'pso', 'PSO478G4515' => 'pso', 'PSO832G1305' => 'pso', 'PSO832G3489' => 'pso', 'QL02p075247' => 'qlo', 'QL03p051148' => 'qlo', 'QL05p010313' => 'qlo', 'QL06p034627' => 'qlo', 'QL10p001889' => 'qlo', 'QL10p010846' => 'qlo', 'RcHm_v2.0_Chr1g0350621' => 'rch', 'RcHm_v2.0_Chr1g0350641' => 'rch', 'RcHm_v2.0_Chr2g0092891' => 'rch', 'RcHm_v2.0_Chr2g0100251' => 'rch', 'RcHm_v2.0_Chr2g0158661' => 'rch', 'RcHm_v2.0_Chr2g0172741' => 'rch', 'RcHm_v2.0_Chr4g0429571' => 'rch', 'RcHm_v2.0_Chr5g0042471' => 'rch', 'RcHm_v2.0_Chr7g0189451' => 'rch', 'Rhsim08G0052000' => 'rsi', 'Rhsim08G0174400' => 'rsi', 'Rhsim08G0193200' => 'rsi', 'Rhsim10G0214800' => 'rsi', 'Rhsim10G0214900' => 'rsi', 'Rhsim10G0215000' => 'rsi', 'Rhsim12G0022900' => 'rsi', 'Rhsim12G0177500' => 'rsi', 'Rhsim12G0177700' => 'rsi', 'Sabra03G0122600' => 'sbr', 'Sabra05G0097400' => 'sbr', 'Sabra12G0064100' => 'sbr', 'Sabra15G0121300' => 'sbr', 'SalBow2G0642' => 'sbo', 'SalBow5G2667' => 'sbo', 'SalBow5G4873' => 'sbo', 'SalBow8G2395' => 'sbo', 'Sc03g0003290' => 'sci', 'Sc10g0010130' => 'sci', 'Sc22g0003650' => 'sci', 'Sed0001603' => 'sed', 'Sed0004259' => 'sed', 'Sed0006789' => 'sed', 'Sed0011838' => 'sed', 'Sed0012964' => 'sed', 'Sed0016383' => 'sed', 'Sed0019010' => 'sed', 'Sed0020188' => 'sed', 'SEGI_04702' => 'sgi', 'SEGI_17231' => 'sgi', 'SEGI_18877' => 'sgi', 'SEGI_25196' => 'sgi', 'SEGI_25515' => 'sgi', 'SEGI_28445' => 'sgi', 'SEGI_37452' => 'sgi', 'SGA_v2.0_scaffold188G40336' => 'sas', 'SGA_v2.0_scaffold228G43247' => 'sas', 'SGA_v2.0_scaffold280G46853' => 'sas', 'SGA_v2.0_scaffold34G13808' => 'sas', 'SGA_v2.0_scaffold40G15576' => 'sas', 'SGA_v2.0_scaffold611G53188' => 'sas', 'SGA_v2.0_scaffold78G25461' => 'sas', 'SGA_v2.0_scaffold90G27888' => 'sas', 'SHI08601' => 'shi', 'SHI08606' => 'shi', 'SHI17117' => 'shi', 'SHI17119' => 'shi', 'SMO118G0201' => 'smo', 'SMO169G0247' => 'smo', 'SMO176G0006' => 'smo', 'SMO176G0015' => 'smo', 'SMO202G0006' => 'smo', 'SMO240G0050' => 'smo', 'SMO286G0009' => 'smo', 'SMO338G0033' => 'smo', 'SMO356G0533' => 'smo', 'SMO364G0382' => 'smo', 'SMO367G0166' => 'smo', 'SMO367G1098' => 'smo', 'Solyc01g009920.3' => 'sly', 'Solyc01g099300.3' => 'sly', 'Solyc02g084700.3' => 'sly', 'Solyc03g097520.3' => 'sly', 'Solyc06g071580.3' => 'sly', 'Solyc10g081760.3' => 'sly', 'Sopen01g005480' => 'spe', 'Sopen01g042850' => 'spe', 'Sopen02g029370' => 'spe', 'Sopen03g028280' => 'spe', 'Sopen06g027870' => 'spe', 'Sopen10g032270' => 'spe', 'Sp5g18180' => 'spa', 'Sp6g12880' => 'spa', 'Sp6g30850' => 'spa', 'Sp7g22960' => 'spa', 'Sp7g34010' => 'spa', 'SpUn1326_0010' => 'spa', 'TAR371G0242' => 'tar', 'TAR622G0638' => 'tar', 'TAR628G1548' => 'tar', 'TAR629G1079' => 'tar', 'TAR629G3413' => 'tar', 'THA.LOC104804249' => 'tha', 'THA.LOC104808315' => 'tha', 'THA.LOC104809238' => 'tha', 'THA.LOC104825484' => 'tha', 'Thecc.01G025500' => 'tca', 'Thecc.03G015800' => 'tca', 'Thecc.03G018000' => 'tca', 'Thecc.03G134800' => 'tca', 'Thecc.04G014700' => 'tca', 'Thhalv10006991m.g' => 'esa', 'Thhalv10012707m.g' => 'esa', 'Thhalv10015739m.g' => 'esa', 'Thhalv10024553m.g' => 'esa', 'Thhalv10024673m.g' => 'esa', 'Thhalv10029187m.g' => 'esa', 'TPR.G12971' => 'tpr', 'TPR.G29396' => 'tpr', 'TPR.G33376' => 'tpr', 'TPR.G35508' => 'tpr', 'TPR.G35516' => 'tpr', 'TPR.G37317' => 'tpr', 'TPR.G37389' => 'tpr', 'TPR.G37523' => 'tpr', 'TPR.G559' => 'tpr', 'TWI14G0070' => 'twi', 'TWI14G0729' => 'twi', 'TWI18G0596' => 'twi', 'TWI39G0780' => 'twi', 'TWI39G0850' => 'twi', 'TWI73G1052' => 'twi', 'unitig_52.g17485' => 'ugi', 'unitig_61.g26355' => 'ugi', 'vmacro01040' => 'vma', 'vmacro16731' => 'vma', 'vmacro18270' => 'vma', 'vmacro19142' => 'vma', 'vmacro19407' => 'vma', 'vmacro19408' => 'vma', 'vmacro21899' => 'vma', 'vmacro21900' => 'vma', 'vmacro21901' => 'vma', 'VMungo0251G0490' => 'vmu', 'VMungo0251G1748' => 'vmu', 'VMungo1309G0421' => 'vmu', 'Zm00001eb086500' => 'zma', 'Zm00001eb150680' => 'zma', 'Zm00001eb162330' => 'zma', 'Zm00001eb203130' => 'zma', 'Zm00001eb369480' => 'zma', 'Zm00001eb382340' => 'zma', 'Zm00001eb416360' => 'zma' ), 'gf_id' => 'HOM05D000902', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000902' ), 'data_identifier' => 'HOM05D000902', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000902', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '663', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02470' => 'bna', 'A01p16260' => 'bna', 'A02p01680' => 'bna', 'A03p16600' => 'bna', 'A03p55660' => 'bna', 'A03p64160' => 'bna', 'A03p64170' => 'bna', 'A08p31900' => 'bna', 'A09p59530' => 'bna', 'A10p08230' => 'bna', 'A10p25090' => 'bna', 'Aa31LG3G7100' => 'aar', 'Aa31LG3G7110' => 'aar', 'Aa31LG6G13160' => 'aar', 'Aa31LG7G10770' => 'aar', 'Aa31LG7G3830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2723' => 'aag', 'Actinidia08045' => 'ach', 'Actinidia08888' => 'ach', 'Actinidia18333' => 'ach', 'Actinidia19334' => 'ach', 'Actinidia25552' => 'ach', 'Actinidia26089' => 'ach', 'Actinidia30615' => 'ach', 'Actinidia30616' => 'ach', 'Actinidia33083' => 'ach', 'Actinidia35762' => 'ach', 'Ah.02g110620' => 'amhyb', 'Ah.11g046390' => 'amhyb', 'AL1G31670' => 'aly', 'AL6G23730' => 'aly', 'AL7G14740' => 'aly', 'AL7G14750' => 'aly', 'AL7G14760' => 'aly', 'AL7G28220' => 'aly', 'AL8G24940' => 'aly', 'Aqoxy3G01665' => 'aox', 'Aqoxy3G02853' => 'aox', 'Aqoxy5G01513' => 'aox', 'Aqoxy5G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8SKA4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ75LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKDA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0LJZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7REX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZP4YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWX7I5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2QKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS0L9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPCD8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q161UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC7XCF' => 'arhy', 'AT1G19100' => 'ath', 'AT4G24970' => 'ath', 'AT4G36270' => 'ath', 'AT4G36280' => 'ath', 'AT4G36290' => 'ath', 'AT5G13130' => 'ath', 'AT5G50780' => 'ath', 'ATR0582G266' => 'atr', 'ATR0661G195' => 'atr', 'ATR1152G031' => 'atr', 'Atru.chr11.2382' => 'acertr', 'Atru.chr12.2337' => 'acertr', 'Atru.chr3.744' => 'acertr', 'Atru.chr6.1870' => 'acertr', 'Atru.chr9.2515' => 'acertr', 'AUR62004120' => 'cqu', 'AUR62005667' => 'cqu', 'AUR62007634' => 'cqu', 'AUR62008186' => 'cqu', 'AUR62008187' => 'cqu', 'AUR62008188' => 'cqu', 'AUR62027954' => 'cqu', 'AUR62028766' => 'cqu', 'AUR62028767' => 'cqu', 'AUR62028768' => 'cqu', 'AUR62028886' => 'cqu', 'AUR62029563' => 'cqu', 'AUR62038832' => 'cqu', 'BcaB01g04149' => 'bca', 'BcaB03g12940' => 'bca', 'BcaB03g13090' => 'bca', 'BcaB03g14466' => 'bca', 'BcaB05g24035' => 'bca', 'BcaC01g06050' => 'bca', 'BcaC04g19148' => 'bca', 'BcaC04g20761' => 'bca', 'BcaC06g32845' => 'bca', 'BcaC07g41274' => 'bca', 'BcaC09g50827' => 'bca', 'BcaNung00741' => 'bca', 'BcaNung00742' => 'bca', 'BcaNung01859' => 'bca', 'BcaNung03985' => 'bca', 'BcaNung03989' => 'bca', 'BcaNung05661' => 'bca', 'BolC1t00257H' => 'bol', 'BolC1t01956H' => 'bol', 'BolC2t06534H' => 'bol', 'BolC3t14334H' => 'bol', 'BolC5t30451H' => 'bol', 'BolC7t45880H' => 'bol', 'BolC7t46586H' => 'bol', 'BolC8t49301H' => 'bol', 'BolC8t51837H' => 'bol', 'BolC9t56822H' => 'bol', 'BolC9t59235H' => 'bol', 'BraA01t00234Z' => 'bra', 'BraA01t01563Z' => 'bra', 'BraA02t05147Z' => 'bra', 'BraA03t10947Z' => 'bra', 'BraA03t14633Z' => 'bra', 'BraA08t35112Z' => 'bra', 'BraA09t41330Z' => 'bra', 'BraA10t44570Z' => 'bra', 'C01p02670' => 'bna', 'C01p20260' => 'bna', 'C02p05890' => 'bna', 'C03p19530' => 'bna', 'C05p17470' => 'bna', 'C07p53900' => 'bna', 'C07p61630' => 'bna', 'C08p16800' => 'bna', 'C08p42810' => 'bna', 'C09p39480' => 'bna', 'C09p63980' => 'bna', 'CAN.G1001.7' => 'can', 'CAN.G1034.55' => 'can', 'CAN.G143.7' => 'can', 'CAN.G3340.1' => 'can', 'CAN.G358.19' => 'can', 'CAN.G373.2' => 'can', 'CAN.G674.16' => 'can', 'CAN.G674.17' => 'can', 'CAN.G674.18' => 'can', 'CAN.G732.2' => 'can', 'CAN.G732.3' => 'can', 'CAN.G993.39' => 'can', 'CANSAT01G2052' => 'cansat', 'CANSAT80G0070' => 'cansat', 'CANSAT80G0483' => 'cansat', 'CANSAT80G0625' => 'cansat', 'CARHR019690' => 'chi', 'CARHR080280' => 'chi', 'CARHR152750' => 'chi', 'CARHR152760' => 'chi', 'CARHR152770' => 'chi', 'CARHR200340' => 'chi', 'CARHR232370' => 'chi', 'CARHR244670' => 'chi', 'CARHR244680' => 'chi', 'CARHR257520' => 'chi', 'Carub.0001s1872' => 'cru', 'Carub.0006s1130' => 'cru', 'Carub.0007s0396' => 'cru', 'Carub.0007s0397' => 'cru', 'Carub.0007s1608' => 'cru', 'Carub.0008s1068' => 'cru', 'Carub.0008s1077' => 'cru', 'Ca_16158_v3' => 'car', 'Ca_17571_v3' => 'car', 'Ca_21936_v3' => 'car', 'Ca_22350_v3' => 'car', 'CBR_g22445' => 'cbr', 'CBR_g26290' => 'cbr', 'Cc04_g09610' => 'ccan', 'Cc04_g12280' => 'ccan', 'Cc07_g10230' => 'ccan', 'CDE02G0093' => 'cde', 'CDE02G0701' => 'cde', 'CDE04G1050' => 'cde', 'CDE05G1833' => 'cde', 'CDE05G3058' => 'cde', 'CDE05G3380' => 'cde', 'CDE06G0536' => 'cde', 'Cfa006923' => 'cfa', 'Cfa009402' => 'cfa', 'Cfa018751' => 'cfa', 'Cfa019164' => 'cfa', 'Cfa022935' => 'cfa', 'Ciclev10019081m.g' => 'ccl', 'Ciclev10025076m.g' => 'ccl', 'Ciclev10030712m.g' => 'ccl', 'Ciclev10033760m.g' => 'ccl', 'CiPaw.05G105600' => 'cil', 'CiPaw.08G136700' => 'cil', 'CiPaw.11G003900' => 'cil', 'CiPaw.11G023700' => 'cil', 'CiPaw.12G003700' => 'cil', 'ClCG06G017100' => 'cla', 'ClCG06G018110' => 'cla', 'ClCG07G008800' => 'cla', 'ClCG07G015330' => 'cla', 'COL.COLO4_13698' => 'col', 'COL.COLO4_16659' => 'col', 'COL.COLO4_21986' => 'col', 'COL.COLO4_24049' => 'col', 'COL.COLO4_29061' => 'col', 'COL.COLO4_29075' => 'col', 'COL.COLO4_30094' => 'col', 'Cpa.g.c33689' => 'cpa', 'Cpa.g.sc108.39' => 'cpa', 'Cpa.g.sc108.41' => 'cpa', 'Cpa.g.sc1163.1' => 'cpa', 'Cpa.g.sc4.155' => 'cpa', 'Cpa.g.sc6.194' => 'cpa', 'CsaV3_1G000340' => 'csa', 'CsaV3_1G001400' => 'csa', 'CsaV3_4G002220' => 'csa', 'CsaV3_4G005370' => 'csa', 'CSS0007487' => 'camsi', 'CSS0008066' => 'camsi', 'CSS0009120' => 'camsi', 'CSS0015512' => 'camsi', 'CSS0022409' => 'camsi', 'CSS0025358' => 'camsi', 'CSS0044547' => 'camsi', 'DCAR_013057' => 'dca', 'DCAR_015058' => 'dca', 'DCAR_016027' => 'dca', 'DCAR_017327' => 'dca', 'DCAR_020743' => 'dca', 'DCAR_026157' => 'dca', 'DCAR_032339' => 'dca', 'DCAR_032340' => 'dca', 'Dinv11200' => 'din', 'Dinv11201' => 'din', 'Dinv20631' => 'din', 'Dinv23182' => 'din', 'Dinv33466' => 'din', 'Dinv33583' => 'din', 'Dinv38565' => 'din', 'Duzib068G0200' => 'dzi', 'Duzib147G0132' => 'dzi', 'Duzib147G0635' => 'dzi', 'Duzib205G1670' => 'dzi', 'Duzib251G0606' => 'dzi', 'ECA232G3336' => 'eca', 'ECA232G3763' => 'eca', 'ECA232G4845' => 'eca', 'ECA234G1607' => 'eca', 'ECA246G0932' => 'eca', 'ECA247G0781' => 'eca', 'ECA247G1932' => 'eca', 'ECA247G2079' => 'eca', 'ECA247G3338' => 'eca', 'ECA247G4115' => 'eca', 'EL10Ac3g06552' => 'bvu', 'EL10Ac5g10721' => 'bvu', 'EL10Ac5g10722' => 'bvu', 'EL10Ac5g10723' => 'bvu', 'EL10Ac5g11361' => 'bvu', 'EL10Ac6g13553' => 'bvu', 'EL10As8g23872' => 'bvu', 'Eucgr.B00250' => 'egr', 'Eucgr.B00251' => 'egr', 'Eucgr.B03533' => 'egr', 'Eucgr.I02381' => 'egr', 'Eucgr.K02700' => 'egr', 'FAN02G0174' => 'fan', 'FAN02G3146' => 'fan', 'FAN04G1672' => 'fan', 'FAN04G2273' => 'fan', 'FAN05G2791' => 'fan', 'FAN05G4035' => 'fan', 'FAN07G0834' => 'fan', 'FAN08G1198' => 'fan', 'FAN09G4182' => 'fan', 'FAN12G0496' => 'fan', 'FAN13G1027' => 'fan', 'FAN13G2951' => 'fan', 'FAN14G0705' => 'fan', 'FAN14G0720' => 'fan', 'FAN17G0201' => 'fan', 'FAN17G2665' => 'fan', 'FAN18G1456' => 'fan', 'FAN18G1525' => 'fan', 'FAN18G3500' => 'fan', 'FAN28G2670' => 'fan', 'FvH4_1g12391' => 'fve', 'FvH4_4g23220' => 'fve', 'FvH4_5g08810' => 'fve', 'FvH4_5g28960' => 'fve', 'FvH4_6g42820' => 'fve', 'FvH4_6g51110' => 'fve', 'Glyma.02G051802' => 'gma', 'Glyma.04G185300' => 'gma', 'Glyma.05G202900' => 'gma', 'Glyma.08G010300' => 'gma', 'Glyma.16G131900' => 'gma', 'Glyma.17G087900' => 'gma', 'Gohir.A07G048600' => 'ghi', 'Gohir.A11G179000' => 'ghi', 'Gohir.A12G140900' => 'ghi', 'Gohir.A12G140950' => 'ghi', 'Gohir.A12G191700' => 'ghi', 'Gohir.A13G086300' => 'ghi', 'Gohir.D07G052900' => 'ghi', 'Gohir.D11G186600' => 'ghi', 'Gohir.D12G145575' => 'ghi', 'Gohir.D12G145650' => 'ghi', 'Gohir.D12G145725' => 'ghi', 'Gohir.D12G194050' => 'ghi', 'Gohir.D13G091800' => 'ghi', 'Gorai.001G055900' => 'gra', 'Gorai.007G198400' => 'gra', 'Gorai.008G157000' => 'gra', 'Gorai.008G157100' => 'gra', 'Gorai.008G208700' => 'gra', 'Gorai.010G138700' => 'gra', 'GSVIVG01000977001' => 'vvi', 'GSVIVG01007708001' => 'vvi', 'GSVIVG01008587001' => 'vvi', 'GSVIVG01018849001' => 'vvi', 'GSVIVG01032432001' => 'vvi', 'HanXRQChr02g0034131' => 'han', 'HanXRQChr02g0035981' => 'han', 'HanXRQChr02g0035991' => 'han', 'HanXRQChr05g0155611' => 'han', 'HanXRQChr05g0155621' => 'han', 'HanXRQChr08g0236501' => 'han', 'HanXRQChr09g0261321' => 'han', 'HanXRQChr09g0272081' => 'han', 'HanXRQChr10g0310741' => 'han', 'HanXRQChr11g0325591' => 'han', 'HanXRQChr12g0385691' => 'han', 'HanXRQChr13g0387801' => 'han', 'HanXRQChr15g0463011' => 'han', 'Haze_03826' => 'cav', 'Haze_03827' => 'cav', 'Haze_07183' => 'cav', 'Haze_07537' => 'cav', 'Haze_07539' => 'cav', 'Haze_12461' => 'cav', 'Haze_16115' => 'cav', 'Haze_16808' => 'cav', 'Haze_18531' => 'cav', 'Hma1.2p1_0046F.1_g026700' => 'hma', 'Hma1.2p1_0046F.1_g026710' => 'hma', 'Hma1.2p1_0168F.1_g074340' => 'hma', 'Hma1.2p1_0266F.1_g107030' => 'hma', 'Hma1.2p1_0266F.1_g107060' => 'hma', 'Hma1.2p1_0275F.1_g110510' => 'hma', 'Hma1.2p1_0592F.1_g185490' => 'hma', 'Hma1.2p1_0592F.1_g185500' => 'hma', 'Hma1.2p1_0592F.1_g185510' => 'hma', 'Hma1.2p1_0592F.1_g185520' => 'hma', 'Hma1.2p1_0592F.1_g185530' => 'hma', 'Hma1.2p1_0818F.1_g223450' => 'hma', 'HPP92_009708' => 'vpl', 'HPP92_009793' => 'vpl', 'HPP92_009796' => 'vpl', 'HPP92_009797' => 'vpl', 'HPP92_014940' => 'vpl', 'HPP92_014988' => 'vpl', 'Hund02463' => 'sun', 'Hund02760' => 'sun', 'Hund05071' => 'sun', 'Hund10108' => 'sun', 'Hund11204' => 'sun', 'Hund14016' => 'sun', 'Hund16464' => 'sun', 'Lalb_Chr09g0333391' => 'lal', 'Lalb_Chr11g0070461' => 'lal', 'Lalb_Chr12g0201671' => 'lal', 'Lalb_Chr13g0297161' => 'lal', 'Lj1g0002823' => 'lja', 'Lj3C1074T6' => 'lonja', 'Lj4A212T28' => 'lonja', 'Lj4g0005516' => 'lja', 'Lj4g0013705' => 'lja', 'Lj4g0027865' => 'lja', 'Lj5C92G16' => 'lonja', 'Lj5C92T12' => 'lonja', 'Lj7C596T3' => 'lonja', 'Lj9A446G59' => 'lonja', 'Lj9A482G21' => 'lonja', 'Lsat_1_v5_gn_1_28261' => 'lsa', 'Lsat_1_v5_gn_1_28281' => 'lsa', 'Lsat_1_v5_gn_1_32721' => 'lsa', 'Lsat_1_v5_gn_4_151760' => 'lsa', 'Lsat_1_v5_gn_4_2120' => 'lsa', 'Lsat_1_v5_gn_4_75761' => 'lsa', 'Lsat_1_v5_gn_5_10920' => 'lsa', 'Manes.02G099900' => 'mes', 'Manes.11G096200' => 'mes', 'Manes.12G007200' => 'mes', 'Manes.14G048300' => 'mes', 'Manes.17G114700' => 'mes', 'Mapoly0002s0070' => 'mpo', 'Mapoly0029s0099' => 'mpo', 'MBI07_g24742_MAGBIO' => 'mbi', 'MBI10_g27988_MAGBIO' => 'mbi', 'MBI11_g13057_MAGBIO' => 'mbi', 'MD02G1137200' => 'mdo', 'MD06G1137200' => 'mdo', 'MD07G1122300' => 'mdo', 'MD09G1078200' => 'mdo', 'MD13G1123700' => 'mdo', 'MD14G1151900' => 'mdo', 'MD17G1030900' => 'mdo', 'MD17G1068200' => 'mdo', 'MD17G1068600' => 'mdo', 'Medtr3g077540' => 'mtr', 'Medtr4g105530' => 'mtr', 'Medtr8g076580' => 'mtr', 'Medtr8g076590' => 'mtr', 'Medtr8g096410' => 'mtr', 'MELO3C016411.2' => 'cme', 'MELO3C017780.2' => 'cme', 'MELO3C022560.2' => 'cme', 'MELO3C026187.2' => 'cme', 'MELO3C026286.2' => 'cme', 'MELO3C032854.2' => 'cme', 'Migut.H02495' => 'egut', 'Migut.I00561' => 'egut', 'Migut.K01015' => 'egut', 'Migut.K01016' => 'egut', 'Migut.L00743' => 'egut', 'Migut.L00744' => 'egut', 'Migut.L00746' => 'egut', 'Migut.L00798' => 'egut', 'Migut.L00799' => 'egut', 'Migut.N02096' => 'egut', 'MSTRG.11259' => 'ama', 'MSTRG.23142' => 'ama', 'MSTRG.2499' => 'ama', 'Nitab4.5_0000003g0730' => 'nta', 'Nitab4.5_0000137g0020' => 'nta', 'Nitab4.5_0000721g0210' => 'nta', 'Nitab4.5_0000723g0050' => 'nta', 'Nitab4.5_0000913g0070' => 'nta', 'Nitab4.5_0001332g0040' => 'nta', 'Nitab4.5_0001771g0050' => 'nta', 'Nitab4.5_0001918g0050' => 'nta', 'Nitab4.5_0002686g0030' => 'nta', 'Nitab4.5_0003156g0020' => 'nta', 'Nitab4.5_0003383g0040' => 'nta', 'Nitab4.5_0003918g0010' => 'nta', 'Nitab4.5_0006760g0010' => 'nta', 'Nn1g05981' => 'nnu', 'Nn1g06288' => 'nnu', 'Nn3g16371' => 'nnu', 'Nn3g16786' => 'nnu', 'Nn4g22232' => 'nnu', 'Oeu005144.1' => 'oeu', 'Oeu005145.1' => 'oeu', 'Oeu011348.1' => 'oeu', 'Oeu016415.1' => 'oeu', 'Oeu023501.1' => 'oeu', 'Oeu044473.1' => 'oeu', 'Oeu048892.2' => 'oeu', 'Os01g0549200' => 'osa', 'Os02g0469300' => 'osa', 'Os04g0311100' => 'osa', 'Os06g0474900' => 'osa', 'Os10g0181700' => 'osa', 'Os11g0454800' => 'osa', 'Peaxi162Scf00037g00714' => 'pax', 'Peaxi162Scf00084g01217' => 'pax', 'Peaxi162Scf00257g00217' => 'pax', 'Peaxi162Scf00516g00215' => 'pax', 'Peaxi162Scf00689g00123' => 'pax', 'PGR044G2719' => 'pgr', 'PGR083G1360' => 'pgr', 'PGR102G2849' => 'pgr', 'PGR119G2534' => 'pgr', 'PGSC0003DMG400003538' => 'stu', 'PGSC0003DMG400028138' => 'stu', 'PGSC0003DMG400031732' => 'stu', 'PGSC0003DMG400038165' => 'stu', 'Phvul.002G284600' => 'pvu', 'Phvul.003G258200' => 'pvu', 'Phvul.009G176500' => 'pvu', 'Potri.003G167201' => 'ptr', 'Potri.005G118400' => 'ptr', 'Potri.012G089000' => 'ptr', 'Potri.012G102800' => 'ptr', 'Potri.015G079400' => 'ptr', 'Potri.015G100900' => 'ptr', 'Pp3c14_9810' => 'ppa', 'Pp3c15_10450' => 'ppa', 'Pp3c20_19150' => 'ppa', 'Pp3c23_12740' => 'ppa', 'Pp3c23_6310' => 'ppa', 'Pp3c24_3720' => 'ppa', 'Pp3c27_2580' => 'ppa', 'Pp3c9_8990' => 'ppa', 'PRCOL_00002854' => 'pco', 'Prupe.1G221200' => 'ppe', 'Prupe.3G289000' => 'ppe', 'Prupe.5G147000' => 'ppe', 'Prupe.6G157300' => 'ppe', 'Prupe.7G163400' => 'ppe', 'Psat0s2177g0040' => 'psa', 'Psat3g174760' => 'psa', 'Psat3g192160' => 'psa', 'Psat4g058520' => 'psa', 'Psat4g096840' => 'psa', 'Psat7g037320' => 'psa', 'PSO017G1274' => 'pso', 'PSO017G5166' => 'pso', 'PSO063G4558' => 'pso', 'PSO170G4458' => 'pso', 'PSO170G5005' => 'pso', 'PSO210G6156' => 'pso', 'PSO210G6635' => 'pso', 'PSO210G7397' => 'pso', 'PSO210G7700' => 'pso', 'PSO455G0035' => 'pso', 'PSO455G0180' => 'pso', 'PSO478G4515' => 'pso', 'PSO832G1305' => 'pso', 'PSO832G3489' => 'pso', 'QL02p075247' => 'qlo', 'QL03p051148' => 'qlo', 'QL05p010313' => 'qlo', 'QL06p034627' => 'qlo', 'QL10p001889' => 'qlo', 'QL10p010846' => 'qlo', 'RcHm_v2.0_Chr1g0350621' => 'rch', 'RcHm_v2.0_Chr1g0350641' => 'rch', 'RcHm_v2.0_Chr2g0092891' => 'rch', 'RcHm_v2.0_Chr2g0100251' => 'rch', 'RcHm_v2.0_Chr2g0158661' => 'rch', 'RcHm_v2.0_Chr2g0172741' => 'rch', 'RcHm_v2.0_Chr4g0429571' => 'rch', 'RcHm_v2.0_Chr5g0042471' => 'rch', 'RcHm_v2.0_Chr7g0189451' => 'rch', 'Rhsim08G0052000' => 'rsi', 'Rhsim08G0174400' => 'rsi', 'Rhsim08G0193200' => 'rsi', 'Rhsim10G0214800' => 'rsi', 'Rhsim10G0214900' => 'rsi', 'Rhsim10G0215000' => 'rsi', 'Rhsim12G0022900' => 'rsi', 'Rhsim12G0177500' => 'rsi', 'Rhsim12G0177700' => 'rsi', 'Sabra03G0122600' => 'sbr', 'Sabra05G0097400' => 'sbr', 'Sabra12G0064100' => 'sbr', 'Sabra15G0121300' => 'sbr', 'SalBow2G0642' => 'sbo', 'SalBow5G2667' => 'sbo', 'SalBow5G4873' => 'sbo', 'SalBow8G2395' => 'sbo', 'Sc03g0003290' => 'sci', 'Sc10g0010130' => 'sci', 'Sc22g0003650' => 'sci', 'Sed0001603' => 'sed', 'Sed0004259' => 'sed', 'Sed0006789' => 'sed', 'Sed0011838' => 'sed', 'Sed0012964' => 'sed', 'Sed0016383' => 'sed', 'Sed0019010' => 'sed', 'Sed0020188' => 'sed', 'SEGI_04702' => 'sgi', 'SEGI_17231' => 'sgi', 'SEGI_18877' => 'sgi', 'SEGI_25196' => 'sgi', 'SEGI_25515' => 'sgi', 'SEGI_28445' => 'sgi', 'SEGI_37452' => 'sgi', 'SGA_v2.0_scaffold188G40336' => 'sas', 'SGA_v2.0_scaffold228G43247' => 'sas', 'SGA_v2.0_scaffold280G46853' => 'sas', 'SGA_v2.0_scaffold34G13808' => 'sas', 'SGA_v2.0_scaffold40G15576' => 'sas', 'SGA_v2.0_scaffold611G53188' => 'sas', 'SGA_v2.0_scaffold78G25461' => 'sas', 'SGA_v2.0_scaffold90G27888' => 'sas', 'SHI08601' => 'shi', 'SHI08606' => 'shi', 'SHI17117' => 'shi', 'SHI17119' => 'shi', 'SMO118G0201' => 'smo', 'SMO169G0247' => 'smo', 'SMO176G0006' => 'smo', 'SMO176G0015' => 'smo', 'SMO202G0006' => 'smo', 'SMO240G0050' => 'smo', 'SMO286G0009' => 'smo', 'SMO338G0033' => 'smo', 'SMO356G0533' => 'smo', 'SMO364G0382' => 'smo', 'SMO367G0166' => 'smo', 'SMO367G1098' => 'smo', 'Solyc01g009920.3' => 'sly', 'Solyc01g099300.3' => 'sly', 'Solyc02g084700.3' => 'sly', 'Solyc03g097520.3' => 'sly', 'Solyc06g071580.3' => 'sly', 'Solyc10g081760.3' => 'sly', 'Sopen01g005480' => 'spe', 'Sopen01g042850' => 'spe', 'Sopen02g029370' => 'spe', 'Sopen03g028280' => 'spe', 'Sopen06g027870' => 'spe', 'Sopen10g032270' => 'spe', 'Sp5g18180' => 'spa', 'Sp6g12880' => 'spa', 'Sp6g30850' => 'spa', 'Sp7g22960' => 'spa', 'Sp7g34010' => 'spa', 'SpUn1326_0010' => 'spa', 'TAR371G0242' => 'tar', 'TAR622G0638' => 'tar', 'TAR628G1548' => 'tar', 'TAR629G1079' => 'tar', 'TAR629G3413' => 'tar', 'THA.LOC104804249' => 'tha', 'THA.LOC104808315' => 'tha', 'THA.LOC104809238' => 'tha', 'THA.LOC104825484' => 'tha', 'Thecc.01G025500' => 'tca', 'Thecc.03G015800' => 'tca', 'Thecc.03G018000' => 'tca', 'Thecc.03G134800' => 'tca', 'Thecc.04G014700' => 'tca', 'Thhalv10006991m.g' => 'esa', 'Thhalv10012707m.g' => 'esa', 'Thhalv10015739m.g' => 'esa', 'Thhalv10024553m.g' => 'esa', 'Thhalv10024673m.g' => 'esa', 'Thhalv10029187m.g' => 'esa', 'TPR.G12971' => 'tpr', 'TPR.G29396' => 'tpr', 'TPR.G33376' => 'tpr', 'TPR.G35508' => 'tpr', 'TPR.G35516' => 'tpr', 'TPR.G37317' => 'tpr', 'TPR.G37389' => 'tpr', 'TPR.G37523' => 'tpr', 'TPR.G559' => 'tpr', 'TWI14G0070' => 'twi', 'TWI14G0729' => 'twi', 'TWI18G0596' => 'twi', 'TWI39G0780' => 'twi', 'TWI39G0850' => 'twi', 'TWI73G1052' => 'twi', 'unitig_52.g17485' => 'ugi', 'unitig_61.g26355' => 'ugi', 'vmacro01040' => 'vma', 'vmacro16731' => 'vma', 'vmacro18270' => 'vma', 'vmacro19142' => 'vma', 'vmacro19407' => 'vma', 'vmacro19408' => 'vma', 'vmacro21899' => 'vma', 'vmacro21900' => 'vma', 'vmacro21901' => 'vma', 'VMungo0251G0490' => 'vmu', 'VMungo0251G1748' => 'vmu', 'VMungo1309G0421' => 'vmu', 'Zm00001eb086500' => 'zma', 'Zm00001eb150680' => 'zma', 'Zm00001eb162330' => 'zma', 'Zm00001eb203130' => 'zma', 'Zm00001eb369480' => 'zma', 'Zm00001eb382340' => 'zma', 'Zm00001eb416360' => 'zma' ) $gf_id = 'HOM05D000902' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000902' ) $data_identifier = 'HOM05D000902' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 13, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 10, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 6, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 9, 'hma' => (int) 12, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 4, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 6, 'ppa' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 6, 'rch' => (int) 9, 'rsi' => (int) 9, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 12, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 3, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416360' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000902', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '663', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02470' => 'bna', 'A01p16260' => 'bna', 'A02p01680' => 'bna', 'A03p16600' => 'bna', 'A03p55660' => 'bna', 'A03p64160' => 'bna', 'A03p64170' => 'bna', 'A08p31900' => 'bna', 'A09p59530' => 'bna', 'A10p08230' => 'bna', 'A10p25090' => 'bna', 'Aa31LG3G7100' => 'aar', 'Aa31LG3G7110' => 'aar', 'Aa31LG6G13160' => 'aar', 'Aa31LG7G10770' => 'aar', 'Aa31LG7G3830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2723' => 'aag', 'Actinidia08045' => 'ach', 'Actinidia08888' => 'ach', 'Actinidia18333' => 'ach', 'Actinidia19334' => 'ach', 'Actinidia25552' => 'ach', 'Actinidia26089' => 'ach', 'Actinidia30615' => 'ach', 'Actinidia30616' => 'ach', 'Actinidia33083' => 'ach', 'Actinidia35762' => 'ach', 'Ah.02g110620' => 'amhyb', 'Ah.11g046390' => 'amhyb', 'AL1G31670' => 'aly', 'AL6G23730' => 'aly', 'AL7G14740' => 'aly', 'AL7G14750' => 'aly', 'AL7G14760' => 'aly', 'AL7G28220' => 'aly', 'AL8G24940' => 'aly', 'Aqoxy3G01665' => 'aox', 'Aqoxy3G02853' => 'aox', 'Aqoxy5G01513' => 'aox', 'Aqoxy5G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8SKA4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ75LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKDA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0LJZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7REX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZP4YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWX7I5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2QKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS0L9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPCD8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q161UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC7XCF' => 'arhy', 'AT1G19100' => 'ath', 'AT4G24970' => 'ath', 'AT4G36270' => 'ath', 'AT4G36280' => 'ath', 'AT4G36290' => 'ath', 'AT5G13130' => 'ath', 'AT5G50780' => 'ath', 'ATR0582G266' => 'atr', 'ATR0661G195' => 'atr', 'ATR1152G031' => 'atr', 'Atru.chr11.2382' => 'acertr', 'Atru.chr12.2337' => 'acertr', 'Atru.chr3.744' => 'acertr', 'Atru.chr6.1870' => 'acertr', 'Atru.chr9.2515' => 'acertr', 'AUR62004120' => 'cqu', 'AUR62005667' => 'cqu', 'AUR62007634' => 'cqu', 'AUR62008186' => 'cqu', 'AUR62008187' => 'cqu', 'AUR62008188' => 'cqu', 'AUR62027954' => 'cqu', 'AUR62028766' => 'cqu', 'AUR62028767' => 'cqu', 'AUR62028768' => 'cqu', 'AUR62028886' => 'cqu', 'AUR62029563' => 'cqu', 'AUR62038832' => 'cqu', 'BcaB01g04149' => 'bca', 'BcaB03g12940' => 'bca', 'BcaB03g13090' => 'bca', 'BcaB03g14466' => 'bca', 'BcaB05g24035' => 'bca', 'BcaC01g06050' => 'bca', 'BcaC04g19148' => 'bca', 'BcaC04g20761' => 'bca', 'BcaC06g32845' => 'bca', 'BcaC07g41274' => 'bca', 'BcaC09g50827' => 'bca', 'BcaNung00741' => 'bca', 'BcaNung00742' => 'bca', 'BcaNung01859' => 'bca', 'BcaNung03985' => 'bca', 'BcaNung03989' => 'bca', 'BcaNung05661' => 'bca', 'BolC1t00257H' => 'bol', 'BolC1t01956H' => 'bol', 'BolC2t06534H' => 'bol', 'BolC3t14334H' => 'bol', 'BolC5t30451H' => 'bol', 'BolC7t45880H' => 'bol', 'BolC7t46586H' => 'bol', 'BolC8t49301H' => 'bol', 'BolC8t51837H' => 'bol', 'BolC9t56822H' => 'bol', 'BolC9t59235H' => 'bol', 'BraA01t00234Z' => 'bra', 'BraA01t01563Z' => 'bra', 'BraA02t05147Z' => 'bra', 'BraA03t10947Z' => 'bra', 'BraA03t14633Z' => 'bra', 'BraA08t35112Z' => 'bra', 'BraA09t41330Z' => 'bra', 'BraA10t44570Z' => 'bra', 'C01p02670' => 'bna', 'C01p20260' => 'bna', 'C02p05890' => 'bna', 'C03p19530' => 'bna', 'C05p17470' => 'bna', 'C07p53900' => 'bna', 'C07p61630' => 'bna', 'C08p16800' => 'bna', 'C08p42810' => 'bna', 'C09p39480' => 'bna', 'C09p63980' => 'bna', 'CAN.G1001.7' => 'can', 'CAN.G1034.55' => 'can', 'CAN.G143.7' => 'can', 'CAN.G3340.1' => 'can', 'CAN.G358.19' => 'can', 'CAN.G373.2' => 'can', 'CAN.G674.16' => 'can', 'CAN.G674.17' => 'can', 'CAN.G674.18' => 'can', 'CAN.G732.2' => 'can', 'CAN.G732.3' => 'can', 'CAN.G993.39' => 'can', 'CANSAT01G2052' => 'cansat', 'CANSAT80G0070' => 'cansat', 'CANSAT80G0483' => 'cansat', 'CANSAT80G0625' => 'cansat', 'CARHR019690' => 'chi', 'CARHR080280' => 'chi', 'CARHR152750' => 'chi', 'CARHR152760' => 'chi', 'CARHR152770' => 'chi', 'CARHR200340' => 'chi', 'CARHR232370' => 'chi', 'CARHR244670' => 'chi', 'CARHR244680' => 'chi', 'CARHR257520' => 'chi', 'Carub.0001s1872' => 'cru', 'Carub.0006s1130' => 'cru', 'Carub.0007s0396' => 'cru', 'Carub.0007s0397' => 'cru', 'Carub.0007s1608' => 'cru', 'Carub.0008s1068' => 'cru', 'Carub.0008s1077' => 'cru', 'Ca_16158_v3' => 'car', 'Ca_17571_v3' => 'car', 'Ca_21936_v3' => 'car', 'Ca_22350_v3' => 'car', 'CBR_g22445' => 'cbr', 'CBR_g26290' => 'cbr', 'Cc04_g09610' => 'ccan', 'Cc04_g12280' => 'ccan', 'Cc07_g10230' => 'ccan', 'CDE02G0093' => 'cde', 'CDE02G0701' => 'cde', 'CDE04G1050' => 'cde', 'CDE05G1833' => 'cde', 'CDE05G3058' => 'cde', 'CDE05G3380' => 'cde', 'CDE06G0536' => 'cde', 'Cfa006923' => 'cfa', 'Cfa009402' => 'cfa', 'Cfa018751' => 'cfa', 'Cfa019164' => 'cfa', 'Cfa022935' => 'cfa', 'Ciclev10019081m.g' => 'ccl', 'Ciclev10025076m.g' => 'ccl', 'Ciclev10030712m.g' => 'ccl', 'Ciclev10033760m.g' => 'ccl', 'CiPaw.05G105600' => 'cil', 'CiPaw.08G136700' => 'cil', 'CiPaw.11G003900' => 'cil', 'CiPaw.11G023700' => 'cil', 'CiPaw.12G003700' => 'cil', 'ClCG06G017100' => 'cla', 'ClCG06G018110' => 'cla', 'ClCG07G008800' => 'cla', 'ClCG07G015330' => 'cla', 'COL.COLO4_13698' => 'col', 'COL.COLO4_16659' => 'col', 'COL.COLO4_21986' => 'col', 'COL.COLO4_24049' => 'col', 'COL.COLO4_29061' => 'col', 'COL.COLO4_29075' => 'col', 'COL.COLO4_30094' => 'col', 'Cpa.g.c33689' => 'cpa', 'Cpa.g.sc108.39' => 'cpa', 'Cpa.g.sc108.41' => 'cpa', 'Cpa.g.sc1163.1' => 'cpa', 'Cpa.g.sc4.155' => 'cpa', 'Cpa.g.sc6.194' => 'cpa', 'CsaV3_1G000340' => 'csa', 'CsaV3_1G001400' => 'csa', 'CsaV3_4G002220' => 'csa', 'CsaV3_4G005370' => 'csa', 'CSS0007487' => 'camsi', 'CSS0008066' => 'camsi', 'CSS0009120' => 'camsi', 'CSS0015512' => 'camsi', 'CSS0022409' => 'camsi', 'CSS0025358' => 'camsi', 'CSS0044547' => 'camsi', 'DCAR_013057' => 'dca', 'DCAR_015058' => 'dca', 'DCAR_016027' => 'dca', 'DCAR_017327' => 'dca', 'DCAR_020743' => 'dca', 'DCAR_026157' => 'dca', 'DCAR_032339' => 'dca', 'DCAR_032340' => 'dca', 'Dinv11200' => 'din', 'Dinv11201' => 'din', 'Dinv20631' => 'din', 'Dinv23182' => 'din', 'Dinv33466' => 'din', 'Dinv33583' => 'din', 'Dinv38565' => 'din', 'Duzib068G0200' => 'dzi', 'Duzib147G0132' => 'dzi', 'Duzib147G0635' => 'dzi', 'Duzib205G1670' => 'dzi', 'Duzib251G0606' => 'dzi', 'ECA232G3336' => 'eca', 'ECA232G3763' => 'eca', 'ECA232G4845' => 'eca', 'ECA234G1607' => 'eca', 'ECA246G0932' => 'eca', 'ECA247G0781' => 'eca', 'ECA247G1932' => 'eca', 'ECA247G2079' => 'eca', 'ECA247G3338' => 'eca', 'ECA247G4115' => 'eca', 'EL10Ac3g06552' => 'bvu', 'EL10Ac5g10721' => 'bvu', 'EL10Ac5g10722' => 'bvu', 'EL10Ac5g10723' => 'bvu', 'EL10Ac5g11361' => 'bvu', 'EL10Ac6g13553' => 'bvu', 'EL10As8g23872' => 'bvu', 'Eucgr.B00250' => 'egr', 'Eucgr.B00251' => 'egr', 'Eucgr.B03533' => 'egr', 'Eucgr.I02381' => 'egr', 'Eucgr.K02700' => 'egr', 'FAN02G0174' => 'fan', 'FAN02G3146' => 'fan', 'FAN04G1672' => 'fan', 'FAN04G2273' => 'fan', 'FAN05G2791' => 'fan', 'FAN05G4035' => 'fan', 'FAN07G0834' => 'fan', 'FAN08G1198' => 'fan', 'FAN09G4182' => 'fan', 'FAN12G0496' => 'fan', 'FAN13G1027' => 'fan', 'FAN13G2951' => 'fan', 'FAN14G0705' => 'fan', 'FAN14G0720' => 'fan', 'FAN17G0201' => 'fan', 'FAN17G2665' => 'fan', 'FAN18G1456' => 'fan', 'FAN18G1525' => 'fan', 'FAN18G3500' => 'fan', 'FAN28G2670' => 'fan', 'FvH4_1g12391' => 'fve', 'FvH4_4g23220' => 'fve', 'FvH4_5g08810' => 'fve', 'FvH4_5g28960' => 'fve', 'FvH4_6g42820' => 'fve', 'FvH4_6g51110' => 'fve', 'Glyma.02G051802' => 'gma', 'Glyma.04G185300' => 'gma', 'Glyma.05G202900' => 'gma', 'Glyma.08G010300' => 'gma', 'Glyma.16G131900' => 'gma', 'Glyma.17G087900' => 'gma', 'Gohir.A07G048600' => 'ghi', 'Gohir.A11G179000' => 'ghi', 'Gohir.A12G140900' => 'ghi', 'Gohir.A12G140950' => 'ghi', 'Gohir.A12G191700' => 'ghi', 'Gohir.A13G086300' => 'ghi', 'Gohir.D07G052900' => 'ghi', 'Gohir.D11G186600' => 'ghi', 'Gohir.D12G145575' => 'ghi', 'Gohir.D12G145650' => 'ghi', 'Gohir.D12G145725' => 'ghi', 'Gohir.D12G194050' => 'ghi', 'Gohir.D13G091800' => 'ghi', 'Gorai.001G055900' => 'gra', 'Gorai.007G198400' => 'gra', 'Gorai.008G157000' => 'gra', 'Gorai.008G157100' => 'gra', 'Gorai.008G208700' => 'gra', 'Gorai.010G138700' => 'gra', 'GSVIVG01000977001' => 'vvi', 'GSVIVG01007708001' => 'vvi', 'GSVIVG01008587001' => 'vvi', 'GSVIVG01018849001' => 'vvi', 'GSVIVG01032432001' => 'vvi', 'HanXRQChr02g0034131' => 'han', 'HanXRQChr02g0035981' => 'han', 'HanXRQChr02g0035991' => 'han', 'HanXRQChr05g0155611' => 'han', 'HanXRQChr05g0155621' => 'han', 'HanXRQChr08g0236501' => 'han', 'HanXRQChr09g0261321' => 'han', 'HanXRQChr09g0272081' => 'han', 'HanXRQChr10g0310741' => 'han', 'HanXRQChr11g0325591' => 'han', 'HanXRQChr12g0385691' => 'han', 'HanXRQChr13g0387801' => 'han', 'HanXRQChr15g0463011' => 'han', 'Haze_03826' => 'cav', 'Haze_03827' => 'cav', 'Haze_07183' => 'cav', 'Haze_07537' => 'cav', 'Haze_07539' => 'cav', 'Haze_12461' => 'cav', 'Haze_16115' => 'cav', 'Haze_16808' => 'cav', 'Haze_18531' => 'cav', 'Hma1.2p1_0046F.1_g026700' => 'hma', 'Hma1.2p1_0046F.1_g026710' => 'hma', 'Hma1.2p1_0168F.1_g074340' => 'hma', 'Hma1.2p1_0266F.1_g107030' => 'hma', 'Hma1.2p1_0266F.1_g107060' => 'hma', 'Hma1.2p1_0275F.1_g110510' => 'hma', 'Hma1.2p1_0592F.1_g185490' => 'hma', 'Hma1.2p1_0592F.1_g185500' => 'hma', 'Hma1.2p1_0592F.1_g185510' => 'hma', 'Hma1.2p1_0592F.1_g185520' => 'hma', 'Hma1.2p1_0592F.1_g185530' => 'hma', 'Hma1.2p1_0818F.1_g223450' => 'hma', 'HPP92_009708' => 'vpl', 'HPP92_009793' => 'vpl', 'HPP92_009796' => 'vpl', 'HPP92_009797' => 'vpl', 'HPP92_014940' => 'vpl', 'HPP92_014988' => 'vpl', 'Hund02463' => 'sun', 'Hund02760' => 'sun', 'Hund05071' => 'sun', 'Hund10108' => 'sun', 'Hund11204' => 'sun', 'Hund14016' => 'sun', 'Hund16464' => 'sun', 'Lalb_Chr09g0333391' => 'lal', 'Lalb_Chr11g0070461' => 'lal', 'Lalb_Chr12g0201671' => 'lal', 'Lalb_Chr13g0297161' => 'lal', 'Lj1g0002823' => 'lja', 'Lj3C1074T6' => 'lonja', 'Lj4A212T28' => 'lonja', 'Lj4g0005516' => 'lja', 'Lj4g0013705' => 'lja', 'Lj4g0027865' => 'lja', 'Lj5C92G16' => 'lonja', 'Lj5C92T12' => 'lonja', 'Lj7C596T3' => 'lonja', 'Lj9A446G59' => 'lonja', 'Lj9A482G21' => 'lonja', 'Lsat_1_v5_gn_1_28261' => 'lsa', 'Lsat_1_v5_gn_1_28281' => 'lsa', 'Lsat_1_v5_gn_1_32721' => 'lsa', 'Lsat_1_v5_gn_4_151760' => 'lsa', 'Lsat_1_v5_gn_4_2120' => 'lsa', 'Lsat_1_v5_gn_4_75761' => 'lsa', 'Lsat_1_v5_gn_5_10920' => 'lsa', 'Manes.02G099900' => 'mes', 'Manes.11G096200' => 'mes', 'Manes.12G007200' => 'mes', 'Manes.14G048300' => 'mes', 'Manes.17G114700' => 'mes', 'Mapoly0002s0070' => 'mpo', 'Mapoly0029s0099' => 'mpo', 'MBI07_g24742_MAGBIO' => 'mbi', 'MBI10_g27988_MAGBIO' => 'mbi', 'MBI11_g13057_MAGBIO' => 'mbi', 'MD02G1137200' => 'mdo', 'MD06G1137200' => 'mdo', 'MD07G1122300' => 'mdo', 'MD09G1078200' => 'mdo', 'MD13G1123700' => 'mdo', 'MD14G1151900' => 'mdo', 'MD17G1030900' => 'mdo', 'MD17G1068200' => 'mdo', 'MD17G1068600' => 'mdo', 'Medtr3g077540' => 'mtr', 'Medtr4g105530' => 'mtr', 'Medtr8g076580' => 'mtr', 'Medtr8g076590' => 'mtr', 'Medtr8g096410' => 'mtr', 'MELO3C016411.2' => 'cme', 'MELO3C017780.2' => 'cme', 'MELO3C022560.2' => 'cme', 'MELO3C026187.2' => 'cme', 'MELO3C026286.2' => 'cme', 'MELO3C032854.2' => 'cme', 'Migut.H02495' => 'egut', 'Migut.I00561' => 'egut', 'Migut.K01015' => 'egut', 'Migut.K01016' => 'egut', 'Migut.L00743' => 'egut', 'Migut.L00744' => 'egut', 'Migut.L00746' => 'egut', 'Migut.L00798' => 'egut', 'Migut.L00799' => 'egut', 'Migut.N02096' => 'egut', 'MSTRG.11259' => 'ama', 'MSTRG.23142' => 'ama', 'MSTRG.2499' => 'ama', 'Nitab4.5_0000003g0730' => 'nta', 'Nitab4.5_0000137g0020' => 'nta', 'Nitab4.5_0000721g0210' => 'nta', 'Nitab4.5_0000723g0050' => 'nta', 'Nitab4.5_0000913g0070' => 'nta', 'Nitab4.5_0001332g0040' => 'nta', 'Nitab4.5_0001771g0050' => 'nta', 'Nitab4.5_0001918g0050' => 'nta', 'Nitab4.5_0002686g0030' => 'nta', 'Nitab4.5_0003156g0020' => 'nta', 'Nitab4.5_0003383g0040' => 'nta', 'Nitab4.5_0003918g0010' => 'nta', 'Nitab4.5_0006760g0010' => 'nta', 'Nn1g05981' => 'nnu', 'Nn1g06288' => 'nnu', 'Nn3g16371' => 'nnu', 'Nn3g16786' => 'nnu', 'Nn4g22232' => 'nnu', 'Oeu005144.1' => 'oeu', 'Oeu005145.1' => 'oeu', 'Oeu011348.1' => 'oeu', 'Oeu016415.1' => 'oeu', 'Oeu023501.1' => 'oeu', 'Oeu044473.1' => 'oeu', 'Oeu048892.2' => 'oeu', 'Os01g0549200' => 'osa', 'Os02g0469300' => 'osa', 'Os04g0311100' => 'osa', 'Os06g0474900' => 'osa', 'Os10g0181700' => 'osa', 'Os11g0454800' => 'osa', 'Peaxi162Scf00037g00714' => 'pax', 'Peaxi162Scf00084g01217' => 'pax', 'Peaxi162Scf00257g00217' => 'pax', 'Peaxi162Scf00516g00215' => 'pax', 'Peaxi162Scf00689g00123' => 'pax', 'PGR044G2719' => 'pgr', 'PGR083G1360' => 'pgr', 'PGR102G2849' => 'pgr', 'PGR119G2534' => 'pgr', 'PGSC0003DMG400003538' => 'stu', 'PGSC0003DMG400028138' => 'stu', 'PGSC0003DMG400031732' => 'stu', 'PGSC0003DMG400038165' => 'stu', 'Phvul.002G284600' => 'pvu', 'Phvul.003G258200' => 'pvu', 'Phvul.009G176500' => 'pvu', 'Potri.003G167201' => 'ptr', 'Potri.005G118400' => 'ptr', 'Potri.012G089000' => 'ptr', 'Potri.012G102800' => 'ptr', 'Potri.015G079400' => 'ptr', 'Potri.015G100900' => 'ptr', 'Pp3c14_9810' => 'ppa', 'Pp3c15_10450' => 'ppa', 'Pp3c20_19150' => 'ppa', 'Pp3c23_12740' => 'ppa', 'Pp3c23_6310' => 'ppa', 'Pp3c24_3720' => 'ppa', 'Pp3c27_2580' => 'ppa', 'Pp3c9_8990' => 'ppa', 'PRCOL_00002854' => 'pco', 'Prupe.1G221200' => 'ppe', 'Prupe.3G289000' => 'ppe', 'Prupe.5G147000' => 'ppe', 'Prupe.6G157300' => 'ppe', 'Prupe.7G163400' => 'ppe', 'Psat0s2177g0040' => 'psa', 'Psat3g174760' => 'psa', 'Psat3g192160' => 'psa', 'Psat4g058520' => 'psa', 'Psat4g096840' => 'psa', 'Psat7g037320' => 'psa', 'PSO017G1274' => 'pso', 'PSO017G5166' => 'pso', 'PSO063G4558' => 'pso', 'PSO170G4458' => 'pso', 'PSO170G5005' => 'pso', 'PSO210G6156' => 'pso', 'PSO210G6635' => 'pso', 'PSO210G7397' => 'pso', 'PSO210G7700' => 'pso', 'PSO455G0035' => 'pso', 'PSO455G0180' => 'pso', 'PSO478G4515' => 'pso', 'PSO832G1305' => 'pso', 'PSO832G3489' => 'pso', 'QL02p075247' => 'qlo', 'QL03p051148' => 'qlo', 'QL05p010313' => 'qlo', 'QL06p034627' => 'qlo', 'QL10p001889' => 'qlo', 'QL10p010846' => 'qlo', 'RcHm_v2.0_Chr1g0350621' => 'rch', 'RcHm_v2.0_Chr1g0350641' => 'rch', 'RcHm_v2.0_Chr2g0092891' => 'rch', 'RcHm_v2.0_Chr2g0100251' => 'rch', 'RcHm_v2.0_Chr2g0158661' => 'rch', 'RcHm_v2.0_Chr2g0172741' => 'rch', 'RcHm_v2.0_Chr4g0429571' => 'rch', 'RcHm_v2.0_Chr5g0042471' => 'rch', 'RcHm_v2.0_Chr7g0189451' => 'rch', 'Rhsim08G0052000' => 'rsi', 'Rhsim08G0174400' => 'rsi', 'Rhsim08G0193200' => 'rsi', 'Rhsim10G0214800' => 'rsi', 'Rhsim10G0214900' => 'rsi', 'Rhsim10G0215000' => 'rsi', 'Rhsim12G0022900' => 'rsi', 'Rhsim12G0177500' => 'rsi', 'Rhsim12G0177700' => 'rsi', 'Sabra03G0122600' => 'sbr', 'Sabra05G0097400' => 'sbr', 'Sabra12G0064100' => 'sbr', 'Sabra15G0121300' => 'sbr', 'SalBow2G0642' => 'sbo', 'SalBow5G2667' => 'sbo', 'SalBow5G4873' => 'sbo', 'SalBow8G2395' => 'sbo', 'Sc03g0003290' => 'sci', 'Sc10g0010130' => 'sci', 'Sc22g0003650' => 'sci', 'Sed0001603' => 'sed', 'Sed0004259' => 'sed', 'Sed0006789' => 'sed', 'Sed0011838' => 'sed', 'Sed0012964' => 'sed', 'Sed0016383' => 'sed', 'Sed0019010' => 'sed', 'Sed0020188' => 'sed', 'SEGI_04702' => 'sgi', 'SEGI_17231' => 'sgi', 'SEGI_18877' => 'sgi', 'SEGI_25196' => 'sgi', 'SEGI_25515' => 'sgi', 'SEGI_28445' => 'sgi', 'SEGI_37452' => 'sgi', 'SGA_v2.0_scaffold188G40336' => 'sas', 'SGA_v2.0_scaffold228G43247' => 'sas', 'SGA_v2.0_scaffold280G46853' => 'sas', 'SGA_v2.0_scaffold34G13808' => 'sas', 'SGA_v2.0_scaffold40G15576' => 'sas', 'SGA_v2.0_scaffold611G53188' => 'sas', 'SGA_v2.0_scaffold78G25461' => 'sas', 'SGA_v2.0_scaffold90G27888' => 'sas', 'SHI08601' => 'shi', 'SHI08606' => 'shi', 'SHI17117' => 'shi', 'SHI17119' => 'shi', 'SMO118G0201' => 'smo', 'SMO169G0247' => 'smo', 'SMO176G0006' => 'smo', 'SMO176G0015' => 'smo', 'SMO202G0006' => 'smo', 'SMO240G0050' => 'smo', 'SMO286G0009' => 'smo', 'SMO338G0033' => 'smo', 'SMO356G0533' => 'smo', 'SMO364G0382' => 'smo', 'SMO367G0166' => 'smo', 'SMO367G1098' => 'smo', 'Solyc01g009920.3' => 'sly', 'Solyc01g099300.3' => 'sly', 'Solyc02g084700.3' => 'sly', 'Solyc03g097520.3' => 'sly', 'Solyc06g071580.3' => 'sly', 'Solyc10g081760.3' => 'sly', 'Sopen01g005480' => 'spe', 'Sopen01g042850' => 'spe', 'Sopen02g029370' => 'spe', 'Sopen03g028280' => 'spe', 'Sopen06g027870' => 'spe', 'Sopen10g032270' => 'spe', 'Sp5g18180' => 'spa', 'Sp6g12880' => 'spa', 'Sp6g30850' => 'spa', 'Sp7g22960' => 'spa', 'Sp7g34010' => 'spa', 'SpUn1326_0010' => 'spa', 'TAR371G0242' => 'tar', 'TAR622G0638' => 'tar', 'TAR628G1548' => 'tar', 'TAR629G1079' => 'tar', 'TAR629G3413' => 'tar', 'THA.LOC104804249' => 'tha', 'THA.LOC104808315' => 'tha', 'THA.LOC104809238' => 'tha', 'THA.LOC104825484' => 'tha', 'Thecc.01G025500' => 'tca', 'Thecc.03G015800' => 'tca', 'Thecc.03G018000' => 'tca', 'Thecc.03G134800' => 'tca', 'Thecc.04G014700' => 'tca', 'Thhalv10006991m.g' => 'esa', 'Thhalv10012707m.g' => 'esa', 'Thhalv10015739m.g' => 'esa', 'Thhalv10024553m.g' => 'esa', 'Thhalv10024673m.g' => 'esa', 'Thhalv10029187m.g' => 'esa', 'TPR.G12971' => 'tpr', 'TPR.G29396' => 'tpr', 'TPR.G33376' => 'tpr', 'TPR.G35508' => 'tpr', 'TPR.G35516' => 'tpr', 'TPR.G37317' => 'tpr', 'TPR.G37389' => 'tpr', 'TPR.G37523' => 'tpr', 'TPR.G559' => 'tpr', 'TWI14G0070' => 'twi', 'TWI14G0729' => 'twi', 'TWI18G0596' => 'twi', 'TWI39G0780' => 'twi', 'TWI39G0850' => 'twi', 'TWI73G1052' => 'twi', 'unitig_52.g17485' => 'ugi', 'unitig_61.g26355' => 'ugi', 'vmacro01040' => 'vma', 'vmacro16731' => 'vma', 'vmacro18270' => 'vma', 'vmacro19142' => 'vma', 'vmacro19407' => 'vma', 'vmacro19408' => 'vma', 'vmacro21899' => 'vma', 'vmacro21900' => 'vma', 'vmacro21901' => 'vma', 'VMungo0251G0490' => 'vmu', 'VMungo0251G1748' => 'vmu', 'VMungo1309G0421' => 'vmu', 'Zm00001eb086500' => 'zma', 'Zm00001eb150680' => 'zma', 'Zm00001eb162330' => 'zma', 'Zm00001eb203130' => 'zma', 'Zm00001eb369480' => 'zma', 'Zm00001eb382340' => 'zma', 'Zm00001eb416360' => 'zma' ), 'gf_id' => 'HOM05D000902', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000902' ), 'data_identifier' => 'HOM05D000902', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000902', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '663', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02470' => 'bna', 'A01p16260' => 'bna', 'A02p01680' => 'bna', 'A03p16600' => 'bna', 'A03p55660' => 'bna', 'A03p64160' => 'bna', 'A03p64170' => 'bna', 'A08p31900' => 'bna', 'A09p59530' => 'bna', 'A10p08230' => 'bna', 'A10p25090' => 'bna', 'Aa31LG3G7100' => 'aar', 'Aa31LG3G7110' => 'aar', 'Aa31LG6G13160' => 'aar', 'Aa31LG7G10770' => 'aar', 'Aa31LG7G3830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2723' => 'aag', 'Actinidia08045' => 'ach', 'Actinidia08888' => 'ach', 'Actinidia18333' => 'ach', 'Actinidia19334' => 'ach', 'Actinidia25552' => 'ach', 'Actinidia26089' => 'ach', 'Actinidia30615' => 'ach', 'Actinidia30616' => 'ach', 'Actinidia33083' => 'ach', 'Actinidia35762' => 'ach', 'Ah.02g110620' => 'amhyb', 'Ah.11g046390' => 'amhyb', 'AL1G31670' => 'aly', 'AL6G23730' => 'aly', 'AL7G14740' => 'aly', 'AL7G14750' => 'aly', 'AL7G14760' => 'aly', 'AL7G28220' => 'aly', 'AL8G24940' => 'aly', 'Aqoxy3G01665' => 'aox', 'Aqoxy3G02853' => 'aox', 'Aqoxy5G01513' => 'aox', 'Aqoxy5G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8SKA4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ75LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKDA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0LJZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7REX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZP4YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWX7I5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2QKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS0L9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPCD8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q161UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC7XCF' => 'arhy', 'AT1G19100' => 'ath', 'AT4G24970' => 'ath', 'AT4G36270' => 'ath', 'AT4G36280' => 'ath', 'AT4G36290' => 'ath', 'AT5G13130' => 'ath', 'AT5G50780' => 'ath', 'ATR0582G266' => 'atr', 'ATR0661G195' => 'atr', 'ATR1152G031' => 'atr', 'Atru.chr11.2382' => 'acertr', 'Atru.chr12.2337' => 'acertr', 'Atru.chr3.744' => 'acertr', 'Atru.chr6.1870' => 'acertr', 'Atru.chr9.2515' => 'acertr', 'AUR62004120' => 'cqu', 'AUR62005667' => 'cqu', 'AUR62007634' => 'cqu', 'AUR62008186' => 'cqu', 'AUR62008187' => 'cqu', 'AUR62008188' => 'cqu', 'AUR62027954' => 'cqu', 'AUR62028766' => 'cqu', 'AUR62028767' => 'cqu', 'AUR62028768' => 'cqu', 'AUR62028886' => 'cqu', 'AUR62029563' => 'cqu', 'AUR62038832' => 'cqu', 'BcaB01g04149' => 'bca', 'BcaB03g12940' => 'bca', 'BcaB03g13090' => 'bca', 'BcaB03g14466' => 'bca', 'BcaB05g24035' => 'bca', 'BcaC01g06050' => 'bca', 'BcaC04g19148' => 'bca', 'BcaC04g20761' => 'bca', 'BcaC06g32845' => 'bca', 'BcaC07g41274' => 'bca', 'BcaC09g50827' => 'bca', 'BcaNung00741' => 'bca', 'BcaNung00742' => 'bca', 'BcaNung01859' => 'bca', 'BcaNung03985' => 'bca', 'BcaNung03989' => 'bca', 'BcaNung05661' => 'bca', 'BolC1t00257H' => 'bol', 'BolC1t01956H' => 'bol', 'BolC2t06534H' => 'bol', 'BolC3t14334H' => 'bol', 'BolC5t30451H' => 'bol', 'BolC7t45880H' => 'bol', 'BolC7t46586H' => 'bol', 'BolC8t49301H' => 'bol', 'BolC8t51837H' => 'bol', 'BolC9t56822H' => 'bol', 'BolC9t59235H' => 'bol', 'BraA01t00234Z' => 'bra', 'BraA01t01563Z' => 'bra', 'BraA02t05147Z' => 'bra', 'BraA03t10947Z' => 'bra', 'BraA03t14633Z' => 'bra', 'BraA08t35112Z' => 'bra', 'BraA09t41330Z' => 'bra', 'BraA10t44570Z' => 'bra', 'C01p02670' => 'bna', 'C01p20260' => 'bna', 'C02p05890' => 'bna', 'C03p19530' => 'bna', 'C05p17470' => 'bna', 'C07p53900' => 'bna', 'C07p61630' => 'bna', 'C08p16800' => 'bna', 'C08p42810' => 'bna', 'C09p39480' => 'bna', 'C09p63980' => 'bna', 'CAN.G1001.7' => 'can', 'CAN.G1034.55' => 'can', 'CAN.G143.7' => 'can', 'CAN.G3340.1' => 'can', 'CAN.G358.19' => 'can', 'CAN.G373.2' => 'can', 'CAN.G674.16' => 'can', 'CAN.G674.17' => 'can', 'CAN.G674.18' => 'can', 'CAN.G732.2' => 'can', 'CAN.G732.3' => 'can', 'CAN.G993.39' => 'can', 'CANSAT01G2052' => 'cansat', 'CANSAT80G0070' => 'cansat', 'CANSAT80G0483' => 'cansat', 'CANSAT80G0625' => 'cansat', 'CARHR019690' => 'chi', 'CARHR080280' => 'chi', 'CARHR152750' => 'chi', 'CARHR152760' => 'chi', 'CARHR152770' => 'chi', 'CARHR200340' => 'chi', 'CARHR232370' => 'chi', 'CARHR244670' => 'chi', 'CARHR244680' => 'chi', 'CARHR257520' => 'chi', 'Carub.0001s1872' => 'cru', 'Carub.0006s1130' => 'cru', 'Carub.0007s0396' => 'cru', 'Carub.0007s0397' => 'cru', 'Carub.0007s1608' => 'cru', 'Carub.0008s1068' => 'cru', 'Carub.0008s1077' => 'cru', 'Ca_16158_v3' => 'car', 'Ca_17571_v3' => 'car', 'Ca_21936_v3' => 'car', 'Ca_22350_v3' => 'car', 'CBR_g22445' => 'cbr', 'CBR_g26290' => 'cbr', 'Cc04_g09610' => 'ccan', 'Cc04_g12280' => 'ccan', 'Cc07_g10230' => 'ccan', 'CDE02G0093' => 'cde', 'CDE02G0701' => 'cde', 'CDE04G1050' => 'cde', 'CDE05G1833' => 'cde', 'CDE05G3058' => 'cde', 'CDE05G3380' => 'cde', 'CDE06G0536' => 'cde', 'Cfa006923' => 'cfa', 'Cfa009402' => 'cfa', 'Cfa018751' => 'cfa', 'Cfa019164' => 'cfa', 'Cfa022935' => 'cfa', 'Ciclev10019081m.g' => 'ccl', 'Ciclev10025076m.g' => 'ccl', 'Ciclev10030712m.g' => 'ccl', 'Ciclev10033760m.g' => 'ccl', 'CiPaw.05G105600' => 'cil', 'CiPaw.08G136700' => 'cil', 'CiPaw.11G003900' => 'cil', 'CiPaw.11G023700' => 'cil', 'CiPaw.12G003700' => 'cil', 'ClCG06G017100' => 'cla', 'ClCG06G018110' => 'cla', 'ClCG07G008800' => 'cla', 'ClCG07G015330' => 'cla', 'COL.COLO4_13698' => 'col', 'COL.COLO4_16659' => 'col', 'COL.COLO4_21986' => 'col', 'COL.COLO4_24049' => 'col', 'COL.COLO4_29061' => 'col', 'COL.COLO4_29075' => 'col', 'COL.COLO4_30094' => 'col', 'Cpa.g.c33689' => 'cpa', 'Cpa.g.sc108.39' => 'cpa', 'Cpa.g.sc108.41' => 'cpa', 'Cpa.g.sc1163.1' => 'cpa', 'Cpa.g.sc4.155' => 'cpa', 'Cpa.g.sc6.194' => 'cpa', 'CsaV3_1G000340' => 'csa', 'CsaV3_1G001400' => 'csa', 'CsaV3_4G002220' => 'csa', 'CsaV3_4G005370' => 'csa', 'CSS0007487' => 'camsi', 'CSS0008066' => 'camsi', 'CSS0009120' => 'camsi', 'CSS0015512' => 'camsi', 'CSS0022409' => 'camsi', 'CSS0025358' => 'camsi', 'CSS0044547' => 'camsi', 'DCAR_013057' => 'dca', 'DCAR_015058' => 'dca', 'DCAR_016027' => 'dca', 'DCAR_017327' => 'dca', 'DCAR_020743' => 'dca', 'DCAR_026157' => 'dca', 'DCAR_032339' => 'dca', 'DCAR_032340' => 'dca', 'Dinv11200' => 'din', 'Dinv11201' => 'din', 'Dinv20631' => 'din', 'Dinv23182' => 'din', 'Dinv33466' => 'din', 'Dinv33583' => 'din', 'Dinv38565' => 'din', 'Duzib068G0200' => 'dzi', 'Duzib147G0132' => 'dzi', 'Duzib147G0635' => 'dzi', 'Duzib205G1670' => 'dzi', 'Duzib251G0606' => 'dzi', 'ECA232G3336' => 'eca', 'ECA232G3763' => 'eca', 'ECA232G4845' => 'eca', 'ECA234G1607' => 'eca', 'ECA246G0932' => 'eca', 'ECA247G0781' => 'eca', 'ECA247G1932' => 'eca', 'ECA247G2079' => 'eca', 'ECA247G3338' => 'eca', 'ECA247G4115' => 'eca', 'EL10Ac3g06552' => 'bvu', 'EL10Ac5g10721' => 'bvu', 'EL10Ac5g10722' => 'bvu', 'EL10Ac5g10723' => 'bvu', 'EL10Ac5g11361' => 'bvu', 'EL10Ac6g13553' => 'bvu', 'EL10As8g23872' => 'bvu', 'Eucgr.B00250' => 'egr', 'Eucgr.B00251' => 'egr', 'Eucgr.B03533' => 'egr', 'Eucgr.I02381' => 'egr', 'Eucgr.K02700' => 'egr', 'FAN02G0174' => 'fan', 'FAN02G3146' => 'fan', 'FAN04G1672' => 'fan', 'FAN04G2273' => 'fan', 'FAN05G2791' => 'fan', 'FAN05G4035' => 'fan', 'FAN07G0834' => 'fan', 'FAN08G1198' => 'fan', 'FAN09G4182' => 'fan', 'FAN12G0496' => 'fan', 'FAN13G1027' => 'fan', 'FAN13G2951' => 'fan', 'FAN14G0705' => 'fan', 'FAN14G0720' => 'fan', 'FAN17G0201' => 'fan', 'FAN17G2665' => 'fan', 'FAN18G1456' => 'fan', 'FAN18G1525' => 'fan', 'FAN18G3500' => 'fan', 'FAN28G2670' => 'fan', 'FvH4_1g12391' => 'fve', 'FvH4_4g23220' => 'fve', 'FvH4_5g08810' => 'fve', 'FvH4_5g28960' => 'fve', 'FvH4_6g42820' => 'fve', 'FvH4_6g51110' => 'fve', 'Glyma.02G051802' => 'gma', 'Glyma.04G185300' => 'gma', 'Glyma.05G202900' => 'gma', 'Glyma.08G010300' => 'gma', 'Glyma.16G131900' => 'gma', 'Glyma.17G087900' => 'gma', 'Gohir.A07G048600' => 'ghi', 'Gohir.A11G179000' => 'ghi', 'Gohir.A12G140900' => 'ghi', 'Gohir.A12G140950' => 'ghi', 'Gohir.A12G191700' => 'ghi', 'Gohir.A13G086300' => 'ghi', 'Gohir.D07G052900' => 'ghi', 'Gohir.D11G186600' => 'ghi', 'Gohir.D12G145575' => 'ghi', 'Gohir.D12G145650' => 'ghi', 'Gohir.D12G145725' => 'ghi', 'Gohir.D12G194050' => 'ghi', 'Gohir.D13G091800' => 'ghi', 'Gorai.001G055900' => 'gra', 'Gorai.007G198400' => 'gra', 'Gorai.008G157000' => 'gra', 'Gorai.008G157100' => 'gra', 'Gorai.008G208700' => 'gra', 'Gorai.010G138700' => 'gra', 'GSVIVG01000977001' => 'vvi', 'GSVIVG01007708001' => 'vvi', 'GSVIVG01008587001' => 'vvi', 'GSVIVG01018849001' => 'vvi', 'GSVIVG01032432001' => 'vvi', 'HanXRQChr02g0034131' => 'han', 'HanXRQChr02g0035981' => 'han', 'HanXRQChr02g0035991' => 'han', 'HanXRQChr05g0155611' => 'han', 'HanXRQChr05g0155621' => 'han', 'HanXRQChr08g0236501' => 'han', 'HanXRQChr09g0261321' => 'han', 'HanXRQChr09g0272081' => 'han', 'HanXRQChr10g0310741' => 'han', 'HanXRQChr11g0325591' => 'han', 'HanXRQChr12g0385691' => 'han', 'HanXRQChr13g0387801' => 'han', 'HanXRQChr15g0463011' => 'han', 'Haze_03826' => 'cav', 'Haze_03827' => 'cav', 'Haze_07183' => 'cav', 'Haze_07537' => 'cav', 'Haze_07539' => 'cav', 'Haze_12461' => 'cav', 'Haze_16115' => 'cav', 'Haze_16808' => 'cav', 'Haze_18531' => 'cav', 'Hma1.2p1_0046F.1_g026700' => 'hma', 'Hma1.2p1_0046F.1_g026710' => 'hma', 'Hma1.2p1_0168F.1_g074340' => 'hma', 'Hma1.2p1_0266F.1_g107030' => 'hma', 'Hma1.2p1_0266F.1_g107060' => 'hma', 'Hma1.2p1_0275F.1_g110510' => 'hma', 'Hma1.2p1_0592F.1_g185490' => 'hma', 'Hma1.2p1_0592F.1_g185500' => 'hma', 'Hma1.2p1_0592F.1_g185510' => 'hma', 'Hma1.2p1_0592F.1_g185520' => 'hma', 'Hma1.2p1_0592F.1_g185530' => 'hma', 'Hma1.2p1_0818F.1_g223450' => 'hma', 'HPP92_009708' => 'vpl', 'HPP92_009793' => 'vpl', 'HPP92_009796' => 'vpl', 'HPP92_009797' => 'vpl', 'HPP92_014940' => 'vpl', 'HPP92_014988' => 'vpl', 'Hund02463' => 'sun', 'Hund02760' => 'sun', 'Hund05071' => 'sun', 'Hund10108' => 'sun', 'Hund11204' => 'sun', 'Hund14016' => 'sun', 'Hund16464' => 'sun', 'Lalb_Chr09g0333391' => 'lal', 'Lalb_Chr11g0070461' => 'lal', 'Lalb_Chr12g0201671' => 'lal', 'Lalb_Chr13g0297161' => 'lal', 'Lj1g0002823' => 'lja', 'Lj3C1074T6' => 'lonja', 'Lj4A212T28' => 'lonja', 'Lj4g0005516' => 'lja', 'Lj4g0013705' => 'lja', 'Lj4g0027865' => 'lja', 'Lj5C92G16' => 'lonja', 'Lj5C92T12' => 'lonja', 'Lj7C596T3' => 'lonja', 'Lj9A446G59' => 'lonja', 'Lj9A482G21' => 'lonja', 'Lsat_1_v5_gn_1_28261' => 'lsa', 'Lsat_1_v5_gn_1_28281' => 'lsa', 'Lsat_1_v5_gn_1_32721' => 'lsa', 'Lsat_1_v5_gn_4_151760' => 'lsa', 'Lsat_1_v5_gn_4_2120' => 'lsa', 'Lsat_1_v5_gn_4_75761' => 'lsa', 'Lsat_1_v5_gn_5_10920' => 'lsa', 'Manes.02G099900' => 'mes', 'Manes.11G096200' => 'mes', 'Manes.12G007200' => 'mes', 'Manes.14G048300' => 'mes', 'Manes.17G114700' => 'mes', 'Mapoly0002s0070' => 'mpo', 'Mapoly0029s0099' => 'mpo', 'MBI07_g24742_MAGBIO' => 'mbi', 'MBI10_g27988_MAGBIO' => 'mbi', 'MBI11_g13057_MAGBIO' => 'mbi', 'MD02G1137200' => 'mdo', 'MD06G1137200' => 'mdo', 'MD07G1122300' => 'mdo', 'MD09G1078200' => 'mdo', 'MD13G1123700' => 'mdo', 'MD14G1151900' => 'mdo', 'MD17G1030900' => 'mdo', 'MD17G1068200' => 'mdo', 'MD17G1068600' => 'mdo', 'Medtr3g077540' => 'mtr', 'Medtr4g105530' => 'mtr', 'Medtr8g076580' => 'mtr', 'Medtr8g076590' => 'mtr', 'Medtr8g096410' => 'mtr', 'MELO3C016411.2' => 'cme', 'MELO3C017780.2' => 'cme', 'MELO3C022560.2' => 'cme', 'MELO3C026187.2' => 'cme', 'MELO3C026286.2' => 'cme', 'MELO3C032854.2' => 'cme', 'Migut.H02495' => 'egut', 'Migut.I00561' => 'egut', 'Migut.K01015' => 'egut', 'Migut.K01016' => 'egut', 'Migut.L00743' => 'egut', 'Migut.L00744' => 'egut', 'Migut.L00746' => 'egut', 'Migut.L00798' => 'egut', 'Migut.L00799' => 'egut', 'Migut.N02096' => 'egut', 'MSTRG.11259' => 'ama', 'MSTRG.23142' => 'ama', 'MSTRG.2499' => 'ama', 'Nitab4.5_0000003g0730' => 'nta', 'Nitab4.5_0000137g0020' => 'nta', 'Nitab4.5_0000721g0210' => 'nta', 'Nitab4.5_0000723g0050' => 'nta', 'Nitab4.5_0000913g0070' => 'nta', 'Nitab4.5_0001332g0040' => 'nta', 'Nitab4.5_0001771g0050' => 'nta', 'Nitab4.5_0001918g0050' => 'nta', 'Nitab4.5_0002686g0030' => 'nta', 'Nitab4.5_0003156g0020' => 'nta', 'Nitab4.5_0003383g0040' => 'nta', 'Nitab4.5_0003918g0010' => 'nta', 'Nitab4.5_0006760g0010' => 'nta', 'Nn1g05981' => 'nnu', 'Nn1g06288' => 'nnu', 'Nn3g16371' => 'nnu', 'Nn3g16786' => 'nnu', 'Nn4g22232' => 'nnu', 'Oeu005144.1' => 'oeu', 'Oeu005145.1' => 'oeu', 'Oeu011348.1' => 'oeu', 'Oeu016415.1' => 'oeu', 'Oeu023501.1' => 'oeu', 'Oeu044473.1' => 'oeu', 'Oeu048892.2' => 'oeu', 'Os01g0549200' => 'osa', 'Os02g0469300' => 'osa', 'Os04g0311100' => 'osa', 'Os06g0474900' => 'osa', 'Os10g0181700' => 'osa', 'Os11g0454800' => 'osa', 'Peaxi162Scf00037g00714' => 'pax', 'Peaxi162Scf00084g01217' => 'pax', 'Peaxi162Scf00257g00217' => 'pax', 'Peaxi162Scf00516g00215' => 'pax', 'Peaxi162Scf00689g00123' => 'pax', 'PGR044G2719' => 'pgr', 'PGR083G1360' => 'pgr', 'PGR102G2849' => 'pgr', 'PGR119G2534' => 'pgr', 'PGSC0003DMG400003538' => 'stu', 'PGSC0003DMG400028138' => 'stu', 'PGSC0003DMG400031732' => 'stu', 'PGSC0003DMG400038165' => 'stu', 'Phvul.002G284600' => 'pvu', 'Phvul.003G258200' => 'pvu', 'Phvul.009G176500' => 'pvu', 'Potri.003G167201' => 'ptr', 'Potri.005G118400' => 'ptr', 'Potri.012G089000' => 'ptr', 'Potri.012G102800' => 'ptr', 'Potri.015G079400' => 'ptr', 'Potri.015G100900' => 'ptr', 'Pp3c14_9810' => 'ppa', 'Pp3c15_10450' => 'ppa', 'Pp3c20_19150' => 'ppa', 'Pp3c23_12740' => 'ppa', 'Pp3c23_6310' => 'ppa', 'Pp3c24_3720' => 'ppa', 'Pp3c27_2580' => 'ppa', 'Pp3c9_8990' => 'ppa', 'PRCOL_00002854' => 'pco', 'Prupe.1G221200' => 'ppe', 'Prupe.3G289000' => 'ppe', 'Prupe.5G147000' => 'ppe', 'Prupe.6G157300' => 'ppe', 'Prupe.7G163400' => 'ppe', 'Psat0s2177g0040' => 'psa', 'Psat3g174760' => 'psa', 'Psat3g192160' => 'psa', 'Psat4g058520' => 'psa', 'Psat4g096840' => 'psa', 'Psat7g037320' => 'psa', 'PSO017G1274' => 'pso', 'PSO017G5166' => 'pso', 'PSO063G4558' => 'pso', 'PSO170G4458' => 'pso', 'PSO170G5005' => 'pso', 'PSO210G6156' => 'pso', 'PSO210G6635' => 'pso', 'PSO210G7397' => 'pso', 'PSO210G7700' => 'pso', 'PSO455G0035' => 'pso', 'PSO455G0180' => 'pso', 'PSO478G4515' => 'pso', 'PSO832G1305' => 'pso', 'PSO832G3489' => 'pso', 'QL02p075247' => 'qlo', 'QL03p051148' => 'qlo', 'QL05p010313' => 'qlo', 'QL06p034627' => 'qlo', 'QL10p001889' => 'qlo', 'QL10p010846' => 'qlo', 'RcHm_v2.0_Chr1g0350621' => 'rch', 'RcHm_v2.0_Chr1g0350641' => 'rch', 'RcHm_v2.0_Chr2g0092891' => 'rch', 'RcHm_v2.0_Chr2g0100251' => 'rch', 'RcHm_v2.0_Chr2g0158661' => 'rch', 'RcHm_v2.0_Chr2g0172741' => 'rch', 'RcHm_v2.0_Chr4g0429571' => 'rch', 'RcHm_v2.0_Chr5g0042471' => 'rch', 'RcHm_v2.0_Chr7g0189451' => 'rch', 'Rhsim08G0052000' => 'rsi', 'Rhsim08G0174400' => 'rsi', 'Rhsim08G0193200' => 'rsi', 'Rhsim10G0214800' => 'rsi', 'Rhsim10G0214900' => 'rsi', 'Rhsim10G0215000' => 'rsi', 'Rhsim12G0022900' => 'rsi', 'Rhsim12G0177500' => 'rsi', 'Rhsim12G0177700' => 'rsi', 'Sabra03G0122600' => 'sbr', 'Sabra05G0097400' => 'sbr', 'Sabra12G0064100' => 'sbr', 'Sabra15G0121300' => 'sbr', 'SalBow2G0642' => 'sbo', 'SalBow5G2667' => 'sbo', 'SalBow5G4873' => 'sbo', 'SalBow8G2395' => 'sbo', 'Sc03g0003290' => 'sci', 'Sc10g0010130' => 'sci', 'Sc22g0003650' => 'sci', 'Sed0001603' => 'sed', 'Sed0004259' => 'sed', 'Sed0006789' => 'sed', 'Sed0011838' => 'sed', 'Sed0012964' => 'sed', 'Sed0016383' => 'sed', 'Sed0019010' => 'sed', 'Sed0020188' => 'sed', 'SEGI_04702' => 'sgi', 'SEGI_17231' => 'sgi', 'SEGI_18877' => 'sgi', 'SEGI_25196' => 'sgi', 'SEGI_25515' => 'sgi', 'SEGI_28445' => 'sgi', 'SEGI_37452' => 'sgi', 'SGA_v2.0_scaffold188G40336' => 'sas', 'SGA_v2.0_scaffold228G43247' => 'sas', 'SGA_v2.0_scaffold280G46853' => 'sas', 'SGA_v2.0_scaffold34G13808' => 'sas', 'SGA_v2.0_scaffold40G15576' => 'sas', 'SGA_v2.0_scaffold611G53188' => 'sas', 'SGA_v2.0_scaffold78G25461' => 'sas', 'SGA_v2.0_scaffold90G27888' => 'sas', 'SHI08601' => 'shi', 'SHI08606' => 'shi', 'SHI17117' => 'shi', 'SHI17119' => 'shi', 'SMO118G0201' => 'smo', 'SMO169G0247' => 'smo', 'SMO176G0006' => 'smo', 'SMO176G0015' => 'smo', 'SMO202G0006' => 'smo', 'SMO240G0050' => 'smo', 'SMO286G0009' => 'smo', 'SMO338G0033' => 'smo', 'SMO356G0533' => 'smo', 'SMO364G0382' => 'smo', 'SMO367G0166' => 'smo', 'SMO367G1098' => 'smo', 'Solyc01g009920.3' => 'sly', 'Solyc01g099300.3' => 'sly', 'Solyc02g084700.3' => 'sly', 'Solyc03g097520.3' => 'sly', 'Solyc06g071580.3' => 'sly', 'Solyc10g081760.3' => 'sly', 'Sopen01g005480' => 'spe', 'Sopen01g042850' => 'spe', 'Sopen02g029370' => 'spe', 'Sopen03g028280' => 'spe', 'Sopen06g027870' => 'spe', 'Sopen10g032270' => 'spe', 'Sp5g18180' => 'spa', 'Sp6g12880' => 'spa', 'Sp6g30850' => 'spa', 'Sp7g22960' => 'spa', 'Sp7g34010' => 'spa', 'SpUn1326_0010' => 'spa', 'TAR371G0242' => 'tar', 'TAR622G0638' => 'tar', 'TAR628G1548' => 'tar', 'TAR629G1079' => 'tar', 'TAR629G3413' => 'tar', 'THA.LOC104804249' => 'tha', 'THA.LOC104808315' => 'tha', 'THA.LOC104809238' => 'tha', 'THA.LOC104825484' => 'tha', 'Thecc.01G025500' => 'tca', 'Thecc.03G015800' => 'tca', 'Thecc.03G018000' => 'tca', 'Thecc.03G134800' => 'tca', 'Thecc.04G014700' => 'tca', 'Thhalv10006991m.g' => 'esa', 'Thhalv10012707m.g' => 'esa', 'Thhalv10015739m.g' => 'esa', 'Thhalv10024553m.g' => 'esa', 'Thhalv10024673m.g' => 'esa', 'Thhalv10029187m.g' => 'esa', 'TPR.G12971' => 'tpr', 'TPR.G29396' => 'tpr', 'TPR.G33376' => 'tpr', 'TPR.G35508' => 'tpr', 'TPR.G35516' => 'tpr', 'TPR.G37317' => 'tpr', 'TPR.G37389' => 'tpr', 'TPR.G37523' => 'tpr', 'TPR.G559' => 'tpr', 'TWI14G0070' => 'twi', 'TWI14G0729' => 'twi', 'TWI18G0596' => 'twi', 'TWI39G0780' => 'twi', 'TWI39G0850' => 'twi', 'TWI73G1052' => 'twi', 'unitig_52.g17485' => 'ugi', 'unitig_61.g26355' => 'ugi', 'vmacro01040' => 'vma', 'vmacro16731' => 'vma', 'vmacro18270' => 'vma', 'vmacro19142' => 'vma', 'vmacro19407' => 'vma', 'vmacro19408' => 'vma', 'vmacro21899' => 'vma', 'vmacro21900' => 'vma', 'vmacro21901' => 'vma', 'VMungo0251G0490' => 'vmu', 'VMungo0251G1748' => 'vmu', 'VMungo1309G0421' => 'vmu', 'Zm00001eb086500' => 'zma', 'Zm00001eb150680' => 'zma', 'Zm00001eb162330' => 'zma', 'Zm00001eb203130' => 'zma', 'Zm00001eb369480' => 'zma', 'Zm00001eb382340' => 'zma', 'Zm00001eb416360' => 'zma' ) $gf_id = 'HOM05D000902' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000902' ) $data_identifier = 'HOM05D000902' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 13, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 10, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 6, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 9, 'hma' => (int) 12, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 4, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 6, 'ppa' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 6, 'rch' => (int) 9, 'rsi' => (int) 9, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 12, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 3, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416360' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000902', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '663', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02470' => 'bna', 'A01p16260' => 'bna', 'A02p01680' => 'bna', 'A03p16600' => 'bna', 'A03p55660' => 'bna', 'A03p64160' => 'bna', 'A03p64170' => 'bna', 'A08p31900' => 'bna', 'A09p59530' => 'bna', 'A10p08230' => 'bna', 'A10p25090' => 'bna', 'Aa31LG3G7100' => 'aar', 'Aa31LG3G7110' => 'aar', 'Aa31LG6G13160' => 'aar', 'Aa31LG7G10770' => 'aar', 'Aa31LG7G3830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2723' => 'aag', 'Actinidia08045' => 'ach', 'Actinidia08888' => 'ach', 'Actinidia18333' => 'ach', 'Actinidia19334' => 'ach', 'Actinidia25552' => 'ach', 'Actinidia26089' => 'ach', 'Actinidia30615' => 'ach', 'Actinidia30616' => 'ach', 'Actinidia33083' => 'ach', 'Actinidia35762' => 'ach', 'Ah.02g110620' => 'amhyb', 'Ah.11g046390' => 'amhyb', 'AL1G31670' => 'aly', 'AL6G23730' => 'aly', 'AL7G14740' => 'aly', 'AL7G14750' => 'aly', 'AL7G14760' => 'aly', 'AL7G28220' => 'aly', 'AL8G24940' => 'aly', 'Aqoxy3G01665' => 'aox', 'Aqoxy3G02853' => 'aox', 'Aqoxy5G01513' => 'aox', 'Aqoxy5G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8SKA4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ75LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKDA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0LJZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7REX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZP4YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWX7I5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2QKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS0L9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPCD8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q161UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC7XCF' => 'arhy', 'AT1G19100' => 'ath', 'AT4G24970' => 'ath', 'AT4G36270' => 'ath', 'AT4G36280' => 'ath', 'AT4G36290' => 'ath', 'AT5G13130' => 'ath', 'AT5G50780' => 'ath', 'ATR0582G266' => 'atr', 'ATR0661G195' => 'atr', 'ATR1152G031' => 'atr', 'Atru.chr11.2382' => 'acertr', 'Atru.chr12.2337' => 'acertr', 'Atru.chr3.744' => 'acertr', 'Atru.chr6.1870' => 'acertr', 'Atru.chr9.2515' => 'acertr', 'AUR62004120' => 'cqu', 'AUR62005667' => 'cqu', 'AUR62007634' => 'cqu', 'AUR62008186' => 'cqu', 'AUR62008187' => 'cqu', 'AUR62008188' => 'cqu', 'AUR62027954' => 'cqu', 'AUR62028766' => 'cqu', 'AUR62028767' => 'cqu', 'AUR62028768' => 'cqu', 'AUR62028886' => 'cqu', 'AUR62029563' => 'cqu', 'AUR62038832' => 'cqu', 'BcaB01g04149' => 'bca', 'BcaB03g12940' => 'bca', 'BcaB03g13090' => 'bca', 'BcaB03g14466' => 'bca', 'BcaB05g24035' => 'bca', 'BcaC01g06050' => 'bca', 'BcaC04g19148' => 'bca', 'BcaC04g20761' => 'bca', 'BcaC06g32845' => 'bca', 'BcaC07g41274' => 'bca', 'BcaC09g50827' => 'bca', 'BcaNung00741' => 'bca', 'BcaNung00742' => 'bca', 'BcaNung01859' => 'bca', 'BcaNung03985' => 'bca', 'BcaNung03989' => 'bca', 'BcaNung05661' => 'bca', 'BolC1t00257H' => 'bol', 'BolC1t01956H' => 'bol', 'BolC2t06534H' => 'bol', 'BolC3t14334H' => 'bol', 'BolC5t30451H' => 'bol', 'BolC7t45880H' => 'bol', 'BolC7t46586H' => 'bol', 'BolC8t49301H' => 'bol', 'BolC8t51837H' => 'bol', 'BolC9t56822H' => 'bol', 'BolC9t59235H' => 'bol', 'BraA01t00234Z' => 'bra', 'BraA01t01563Z' => 'bra', 'BraA02t05147Z' => 'bra', 'BraA03t10947Z' => 'bra', 'BraA03t14633Z' => 'bra', 'BraA08t35112Z' => 'bra', 'BraA09t41330Z' => 'bra', 'BraA10t44570Z' => 'bra', 'C01p02670' => 'bna', 'C01p20260' => 'bna', 'C02p05890' => 'bna', 'C03p19530' => 'bna', 'C05p17470' => 'bna', 'C07p53900' => 'bna', 'C07p61630' => 'bna', 'C08p16800' => 'bna', 'C08p42810' => 'bna', 'C09p39480' => 'bna', 'C09p63980' => 'bna', 'CAN.G1001.7' => 'can', 'CAN.G1034.55' => 'can', 'CAN.G143.7' => 'can', 'CAN.G3340.1' => 'can', 'CAN.G358.19' => 'can', 'CAN.G373.2' => 'can', 'CAN.G674.16' => 'can', 'CAN.G674.17' => 'can', 'CAN.G674.18' => 'can', 'CAN.G732.2' => 'can', 'CAN.G732.3' => 'can', 'CAN.G993.39' => 'can', 'CANSAT01G2052' => 'cansat', 'CANSAT80G0070' => 'cansat', 'CANSAT80G0483' => 'cansat', 'CANSAT80G0625' => 'cansat', 'CARHR019690' => 'chi', 'CARHR080280' => 'chi', 'CARHR152750' => 'chi', 'CARHR152760' => 'chi', 'CARHR152770' => 'chi', 'CARHR200340' => 'chi', 'CARHR232370' => 'chi', 'CARHR244670' => 'chi', 'CARHR244680' => 'chi', 'CARHR257520' => 'chi', 'Carub.0001s1872' => 'cru', 'Carub.0006s1130' => 'cru', 'Carub.0007s0396' => 'cru', 'Carub.0007s0397' => 'cru', 'Carub.0007s1608' => 'cru', 'Carub.0008s1068' => 'cru', 'Carub.0008s1077' => 'cru', 'Ca_16158_v3' => 'car', 'Ca_17571_v3' => 'car', 'Ca_21936_v3' => 'car', 'Ca_22350_v3' => 'car', 'CBR_g22445' => 'cbr', 'CBR_g26290' => 'cbr', 'Cc04_g09610' => 'ccan', 'Cc04_g12280' => 'ccan', 'Cc07_g10230' => 'ccan', 'CDE02G0093' => 'cde', 'CDE02G0701' => 'cde', 'CDE04G1050' => 'cde', 'CDE05G1833' => 'cde', 'CDE05G3058' => 'cde', 'CDE05G3380' => 'cde', 'CDE06G0536' => 'cde', 'Cfa006923' => 'cfa', 'Cfa009402' => 'cfa', 'Cfa018751' => 'cfa', 'Cfa019164' => 'cfa', 'Cfa022935' => 'cfa', 'Ciclev10019081m.g' => 'ccl', 'Ciclev10025076m.g' => 'ccl', 'Ciclev10030712m.g' => 'ccl', 'Ciclev10033760m.g' => 'ccl', 'CiPaw.05G105600' => 'cil', 'CiPaw.08G136700' => 'cil', 'CiPaw.11G003900' => 'cil', 'CiPaw.11G023700' => 'cil', 'CiPaw.12G003700' => 'cil', 'ClCG06G017100' => 'cla', 'ClCG06G018110' => 'cla', 'ClCG07G008800' => 'cla', 'ClCG07G015330' => 'cla', 'COL.COLO4_13698' => 'col', 'COL.COLO4_16659' => 'col', 'COL.COLO4_21986' => 'col', 'COL.COLO4_24049' => 'col', 'COL.COLO4_29061' => 'col', 'COL.COLO4_29075' => 'col', 'COL.COLO4_30094' => 'col', 'Cpa.g.c33689' => 'cpa', 'Cpa.g.sc108.39' => 'cpa', 'Cpa.g.sc108.41' => 'cpa', 'Cpa.g.sc1163.1' => 'cpa', 'Cpa.g.sc4.155' => 'cpa', 'Cpa.g.sc6.194' => 'cpa', 'CsaV3_1G000340' => 'csa', 'CsaV3_1G001400' => 'csa', 'CsaV3_4G002220' => 'csa', 'CsaV3_4G005370' => 'csa', 'CSS0007487' => 'camsi', 'CSS0008066' => 'camsi', 'CSS0009120' => 'camsi', 'CSS0015512' => 'camsi', 'CSS0022409' => 'camsi', 'CSS0025358' => 'camsi', 'CSS0044547' => 'camsi', 'DCAR_013057' => 'dca', 'DCAR_015058' => 'dca', 'DCAR_016027' => 'dca', 'DCAR_017327' => 'dca', 'DCAR_020743' => 'dca', 'DCAR_026157' => 'dca', 'DCAR_032339' => 'dca', 'DCAR_032340' => 'dca', 'Dinv11200' => 'din', 'Dinv11201' => 'din', 'Dinv20631' => 'din', 'Dinv23182' => 'din', 'Dinv33466' => 'din', 'Dinv33583' => 'din', 'Dinv38565' => 'din', 'Duzib068G0200' => 'dzi', 'Duzib147G0132' => 'dzi', 'Duzib147G0635' => 'dzi', 'Duzib205G1670' => 'dzi', 'Duzib251G0606' => 'dzi', 'ECA232G3336' => 'eca', 'ECA232G3763' => 'eca', 'ECA232G4845' => 'eca', 'ECA234G1607' => 'eca', 'ECA246G0932' => 'eca', 'ECA247G0781' => 'eca', 'ECA247G1932' => 'eca', 'ECA247G2079' => 'eca', 'ECA247G3338' => 'eca', 'ECA247G4115' => 'eca', 'EL10Ac3g06552' => 'bvu', 'EL10Ac5g10721' => 'bvu', 'EL10Ac5g10722' => 'bvu', 'EL10Ac5g10723' => 'bvu', 'EL10Ac5g11361' => 'bvu', 'EL10Ac6g13553' => 'bvu', 'EL10As8g23872' => 'bvu', 'Eucgr.B00250' => 'egr', 'Eucgr.B00251' => 'egr', 'Eucgr.B03533' => 'egr', 'Eucgr.I02381' => 'egr', 'Eucgr.K02700' => 'egr', 'FAN02G0174' => 'fan', 'FAN02G3146' => 'fan', 'FAN04G1672' => 'fan', 'FAN04G2273' => 'fan', 'FAN05G2791' => 'fan', 'FAN05G4035' => 'fan', 'FAN07G0834' => 'fan', 'FAN08G1198' => 'fan', 'FAN09G4182' => 'fan', 'FAN12G0496' => 'fan', 'FAN13G1027' => 'fan', 'FAN13G2951' => 'fan', 'FAN14G0705' => 'fan', 'FAN14G0720' => 'fan', 'FAN17G0201' => 'fan', 'FAN17G2665' => 'fan', 'FAN18G1456' => 'fan', 'FAN18G1525' => 'fan', 'FAN18G3500' => 'fan', 'FAN28G2670' => 'fan', 'FvH4_1g12391' => 'fve', 'FvH4_4g23220' => 'fve', 'FvH4_5g08810' => 'fve', 'FvH4_5g28960' => 'fve', 'FvH4_6g42820' => 'fve', 'FvH4_6g51110' => 'fve', 'Glyma.02G051802' => 'gma', 'Glyma.04G185300' => 'gma', 'Glyma.05G202900' => 'gma', 'Glyma.08G010300' => 'gma', 'Glyma.16G131900' => 'gma', 'Glyma.17G087900' => 'gma', 'Gohir.A07G048600' => 'ghi', 'Gohir.A11G179000' => 'ghi', 'Gohir.A12G140900' => 'ghi', 'Gohir.A12G140950' => 'ghi', 'Gohir.A12G191700' => 'ghi', 'Gohir.A13G086300' => 'ghi', 'Gohir.D07G052900' => 'ghi', 'Gohir.D11G186600' => 'ghi', 'Gohir.D12G145575' => 'ghi', 'Gohir.D12G145650' => 'ghi', 'Gohir.D12G145725' => 'ghi', 'Gohir.D12G194050' => 'ghi', 'Gohir.D13G091800' => 'ghi', 'Gorai.001G055900' => 'gra', 'Gorai.007G198400' => 'gra', 'Gorai.008G157000' => 'gra', 'Gorai.008G157100' => 'gra', 'Gorai.008G208700' => 'gra', 'Gorai.010G138700' => 'gra', 'GSVIVG01000977001' => 'vvi', 'GSVIVG01007708001' => 'vvi', 'GSVIVG01008587001' => 'vvi', 'GSVIVG01018849001' => 'vvi', 'GSVIVG01032432001' => 'vvi', 'HanXRQChr02g0034131' => 'han', 'HanXRQChr02g0035981' => 'han', 'HanXRQChr02g0035991' => 'han', 'HanXRQChr05g0155611' => 'han', 'HanXRQChr05g0155621' => 'han', 'HanXRQChr08g0236501' => 'han', 'HanXRQChr09g0261321' => 'han', 'HanXRQChr09g0272081' => 'han', 'HanXRQChr10g0310741' => 'han', 'HanXRQChr11g0325591' => 'han', 'HanXRQChr12g0385691' => 'han', 'HanXRQChr13g0387801' => 'han', 'HanXRQChr15g0463011' => 'han', 'Haze_03826' => 'cav', 'Haze_03827' => 'cav', 'Haze_07183' => 'cav', 'Haze_07537' => 'cav', 'Haze_07539' => 'cav', 'Haze_12461' => 'cav', 'Haze_16115' => 'cav', 'Haze_16808' => 'cav', 'Haze_18531' => 'cav', 'Hma1.2p1_0046F.1_g026700' => 'hma', 'Hma1.2p1_0046F.1_g026710' => 'hma', 'Hma1.2p1_0168F.1_g074340' => 'hma', 'Hma1.2p1_0266F.1_g107030' => 'hma', 'Hma1.2p1_0266F.1_g107060' => 'hma', 'Hma1.2p1_0275F.1_g110510' => 'hma', 'Hma1.2p1_0592F.1_g185490' => 'hma', 'Hma1.2p1_0592F.1_g185500' => 'hma', 'Hma1.2p1_0592F.1_g185510' => 'hma', 'Hma1.2p1_0592F.1_g185520' => 'hma', 'Hma1.2p1_0592F.1_g185530' => 'hma', 'Hma1.2p1_0818F.1_g223450' => 'hma', 'HPP92_009708' => 'vpl', 'HPP92_009793' => 'vpl', 'HPP92_009796' => 'vpl', 'HPP92_009797' => 'vpl', 'HPP92_014940' => 'vpl', 'HPP92_014988' => 'vpl', 'Hund02463' => 'sun', 'Hund02760' => 'sun', 'Hund05071' => 'sun', 'Hund10108' => 'sun', 'Hund11204' => 'sun', 'Hund14016' => 'sun', 'Hund16464' => 'sun', 'Lalb_Chr09g0333391' => 'lal', 'Lalb_Chr11g0070461' => 'lal', 'Lalb_Chr12g0201671' => 'lal', 'Lalb_Chr13g0297161' => 'lal', 'Lj1g0002823' => 'lja', 'Lj3C1074T6' => 'lonja', 'Lj4A212T28' => 'lonja', 'Lj4g0005516' => 'lja', 'Lj4g0013705' => 'lja', 'Lj4g0027865' => 'lja', 'Lj5C92G16' => 'lonja', 'Lj5C92T12' => 'lonja', 'Lj7C596T3' => 'lonja', 'Lj9A446G59' => 'lonja', 'Lj9A482G21' => 'lonja', 'Lsat_1_v5_gn_1_28261' => 'lsa', 'Lsat_1_v5_gn_1_28281' => 'lsa', 'Lsat_1_v5_gn_1_32721' => 'lsa', 'Lsat_1_v5_gn_4_151760' => 'lsa', 'Lsat_1_v5_gn_4_2120' => 'lsa', 'Lsat_1_v5_gn_4_75761' => 'lsa', 'Lsat_1_v5_gn_5_10920' => 'lsa', 'Manes.02G099900' => 'mes', 'Manes.11G096200' => 'mes', 'Manes.12G007200' => 'mes', 'Manes.14G048300' => 'mes', 'Manes.17G114700' => 'mes', 'Mapoly0002s0070' => 'mpo', 'Mapoly0029s0099' => 'mpo', 'MBI07_g24742_MAGBIO' => 'mbi', 'MBI10_g27988_MAGBIO' => 'mbi', 'MBI11_g13057_MAGBIO' => 'mbi', 'MD02G1137200' => 'mdo', 'MD06G1137200' => 'mdo', 'MD07G1122300' => 'mdo', 'MD09G1078200' => 'mdo', 'MD13G1123700' => 'mdo', 'MD14G1151900' => 'mdo', 'MD17G1030900' => 'mdo', 'MD17G1068200' => 'mdo', 'MD17G1068600' => 'mdo', 'Medtr3g077540' => 'mtr', 'Medtr4g105530' => 'mtr', 'Medtr8g076580' => 'mtr', 'Medtr8g076590' => 'mtr', 'Medtr8g096410' => 'mtr', 'MELO3C016411.2' => 'cme', 'MELO3C017780.2' => 'cme', 'MELO3C022560.2' => 'cme', 'MELO3C026187.2' => 'cme', 'MELO3C026286.2' => 'cme', 'MELO3C032854.2' => 'cme', 'Migut.H02495' => 'egut', 'Migut.I00561' => 'egut', 'Migut.K01015' => 'egut', 'Migut.K01016' => 'egut', 'Migut.L00743' => 'egut', 'Migut.L00744' => 'egut', 'Migut.L00746' => 'egut', 'Migut.L00798' => 'egut', 'Migut.L00799' => 'egut', 'Migut.N02096' => 'egut', 'MSTRG.11259' => 'ama', 'MSTRG.23142' => 'ama', 'MSTRG.2499' => 'ama', 'Nitab4.5_0000003g0730' => 'nta', 'Nitab4.5_0000137g0020' => 'nta', 'Nitab4.5_0000721g0210' => 'nta', 'Nitab4.5_0000723g0050' => 'nta', 'Nitab4.5_0000913g0070' => 'nta', 'Nitab4.5_0001332g0040' => 'nta', 'Nitab4.5_0001771g0050' => 'nta', 'Nitab4.5_0001918g0050' => 'nta', 'Nitab4.5_0002686g0030' => 'nta', 'Nitab4.5_0003156g0020' => 'nta', 'Nitab4.5_0003383g0040' => 'nta', 'Nitab4.5_0003918g0010' => 'nta', 'Nitab4.5_0006760g0010' => 'nta', 'Nn1g05981' => 'nnu', 'Nn1g06288' => 'nnu', 'Nn3g16371' => 'nnu', 'Nn3g16786' => 'nnu', 'Nn4g22232' => 'nnu', 'Oeu005144.1' => 'oeu', 'Oeu005145.1' => 'oeu', 'Oeu011348.1' => 'oeu', 'Oeu016415.1' => 'oeu', 'Oeu023501.1' => 'oeu', 'Oeu044473.1' => 'oeu', 'Oeu048892.2' => 'oeu', 'Os01g0549200' => 'osa', 'Os02g0469300' => 'osa', 'Os04g0311100' => 'osa', 'Os06g0474900' => 'osa', 'Os10g0181700' => 'osa', 'Os11g0454800' => 'osa', 'Peaxi162Scf00037g00714' => 'pax', 'Peaxi162Scf00084g01217' => 'pax', 'Peaxi162Scf00257g00217' => 'pax', 'Peaxi162Scf00516g00215' => 'pax', 'Peaxi162Scf00689g00123' => 'pax', 'PGR044G2719' => 'pgr', 'PGR083G1360' => 'pgr', 'PGR102G2849' => 'pgr', 'PGR119G2534' => 'pgr', 'PGSC0003DMG400003538' => 'stu', 'PGSC0003DMG400028138' => 'stu', 'PGSC0003DMG400031732' => 'stu', 'PGSC0003DMG400038165' => 'stu', 'Phvul.002G284600' => 'pvu', 'Phvul.003G258200' => 'pvu', 'Phvul.009G176500' => 'pvu', 'Potri.003G167201' => 'ptr', 'Potri.005G118400' => 'ptr', 'Potri.012G089000' => 'ptr', 'Potri.012G102800' => 'ptr', 'Potri.015G079400' => 'ptr', 'Potri.015G100900' => 'ptr', 'Pp3c14_9810' => 'ppa', 'Pp3c15_10450' => 'ppa', 'Pp3c20_19150' => 'ppa', 'Pp3c23_12740' => 'ppa', 'Pp3c23_6310' => 'ppa', 'Pp3c24_3720' => 'ppa', 'Pp3c27_2580' => 'ppa', 'Pp3c9_8990' => 'ppa', 'PRCOL_00002854' => 'pco', 'Prupe.1G221200' => 'ppe', 'Prupe.3G289000' => 'ppe', 'Prupe.5G147000' => 'ppe', 'Prupe.6G157300' => 'ppe', 'Prupe.7G163400' => 'ppe', 'Psat0s2177g0040' => 'psa', 'Psat3g174760' => 'psa', 'Psat3g192160' => 'psa', 'Psat4g058520' => 'psa', 'Psat4g096840' => 'psa', 'Psat7g037320' => 'psa', 'PSO017G1274' => 'pso', 'PSO017G5166' => 'pso', 'PSO063G4558' => 'pso', 'PSO170G4458' => 'pso', 'PSO170G5005' => 'pso', 'PSO210G6156' => 'pso', 'PSO210G6635' => 'pso', 'PSO210G7397' => 'pso', 'PSO210G7700' => 'pso', 'PSO455G0035' => 'pso', 'PSO455G0180' => 'pso', 'PSO478G4515' => 'pso', 'PSO832G1305' => 'pso', 'PSO832G3489' => 'pso', 'QL02p075247' => 'qlo', 'QL03p051148' => 'qlo', 'QL05p010313' => 'qlo', 'QL06p034627' => 'qlo', 'QL10p001889' => 'qlo', 'QL10p010846' => 'qlo', 'RcHm_v2.0_Chr1g0350621' => 'rch', 'RcHm_v2.0_Chr1g0350641' => 'rch', 'RcHm_v2.0_Chr2g0092891' => 'rch', 'RcHm_v2.0_Chr2g0100251' => 'rch', 'RcHm_v2.0_Chr2g0158661' => 'rch', 'RcHm_v2.0_Chr2g0172741' => 'rch', 'RcHm_v2.0_Chr4g0429571' => 'rch', 'RcHm_v2.0_Chr5g0042471' => 'rch', 'RcHm_v2.0_Chr7g0189451' => 'rch', 'Rhsim08G0052000' => 'rsi', 'Rhsim08G0174400' => 'rsi', 'Rhsim08G0193200' => 'rsi', 'Rhsim10G0214800' => 'rsi', 'Rhsim10G0214900' => 'rsi', 'Rhsim10G0215000' => 'rsi', 'Rhsim12G0022900' => 'rsi', 'Rhsim12G0177500' => 'rsi', 'Rhsim12G0177700' => 'rsi', 'Sabra03G0122600' => 'sbr', 'Sabra05G0097400' => 'sbr', 'Sabra12G0064100' => 'sbr', 'Sabra15G0121300' => 'sbr', 'SalBow2G0642' => 'sbo', 'SalBow5G2667' => 'sbo', 'SalBow5G4873' => 'sbo', 'SalBow8G2395' => 'sbo', 'Sc03g0003290' => 'sci', 'Sc10g0010130' => 'sci', 'Sc22g0003650' => 'sci', 'Sed0001603' => 'sed', 'Sed0004259' => 'sed', 'Sed0006789' => 'sed', 'Sed0011838' => 'sed', 'Sed0012964' => 'sed', 'Sed0016383' => 'sed', 'Sed0019010' => 'sed', 'Sed0020188' => 'sed', 'SEGI_04702' => 'sgi', 'SEGI_17231' => 'sgi', 'SEGI_18877' => 'sgi', 'SEGI_25196' => 'sgi', 'SEGI_25515' => 'sgi', 'SEGI_28445' => 'sgi', 'SEGI_37452' => 'sgi', 'SGA_v2.0_scaffold188G40336' => 'sas', 'SGA_v2.0_scaffold228G43247' => 'sas', 'SGA_v2.0_scaffold280G46853' => 'sas', 'SGA_v2.0_scaffold34G13808' => 'sas', 'SGA_v2.0_scaffold40G15576' => 'sas', 'SGA_v2.0_scaffold611G53188' => 'sas', 'SGA_v2.0_scaffold78G25461' => 'sas', 'SGA_v2.0_scaffold90G27888' => 'sas', 'SHI08601' => 'shi', 'SHI08606' => 'shi', 'SHI17117' => 'shi', 'SHI17119' => 'shi', 'SMO118G0201' => 'smo', 'SMO169G0247' => 'smo', 'SMO176G0006' => 'smo', 'SMO176G0015' => 'smo', 'SMO202G0006' => 'smo', 'SMO240G0050' => 'smo', 'SMO286G0009' => 'smo', 'SMO338G0033' => 'smo', 'SMO356G0533' => 'smo', 'SMO364G0382' => 'smo', 'SMO367G0166' => 'smo', 'SMO367G1098' => 'smo', 'Solyc01g009920.3' => 'sly', 'Solyc01g099300.3' => 'sly', 'Solyc02g084700.3' => 'sly', 'Solyc03g097520.3' => 'sly', 'Solyc06g071580.3' => 'sly', 'Solyc10g081760.3' => 'sly', 'Sopen01g005480' => 'spe', 'Sopen01g042850' => 'spe', 'Sopen02g029370' => 'spe', 'Sopen03g028280' => 'spe', 'Sopen06g027870' => 'spe', 'Sopen10g032270' => 'spe', 'Sp5g18180' => 'spa', 'Sp6g12880' => 'spa', 'Sp6g30850' => 'spa', 'Sp7g22960' => 'spa', 'Sp7g34010' => 'spa', 'SpUn1326_0010' => 'spa', 'TAR371G0242' => 'tar', 'TAR622G0638' => 'tar', 'TAR628G1548' => 'tar', 'TAR629G1079' => 'tar', 'TAR629G3413' => 'tar', 'THA.LOC104804249' => 'tha', 'THA.LOC104808315' => 'tha', 'THA.LOC104809238' => 'tha', 'THA.LOC104825484' => 'tha', 'Thecc.01G025500' => 'tca', 'Thecc.03G015800' => 'tca', 'Thecc.03G018000' => 'tca', 'Thecc.03G134800' => 'tca', 'Thecc.04G014700' => 'tca', 'Thhalv10006991m.g' => 'esa', 'Thhalv10012707m.g' => 'esa', 'Thhalv10015739m.g' => 'esa', 'Thhalv10024553m.g' => 'esa', 'Thhalv10024673m.g' => 'esa', 'Thhalv10029187m.g' => 'esa', 'TPR.G12971' => 'tpr', 'TPR.G29396' => 'tpr', 'TPR.G33376' => 'tpr', 'TPR.G35508' => 'tpr', 'TPR.G35516' => 'tpr', 'TPR.G37317' => 'tpr', 'TPR.G37389' => 'tpr', 'TPR.G37523' => 'tpr', 'TPR.G559' => 'tpr', 'TWI14G0070' => 'twi', 'TWI14G0729' => 'twi', 'TWI18G0596' => 'twi', 'TWI39G0780' => 'twi', 'TWI39G0850' => 'twi', 'TWI73G1052' => 'twi', 'unitig_52.g17485' => 'ugi', 'unitig_61.g26355' => 'ugi', 'vmacro01040' => 'vma', 'vmacro16731' => 'vma', 'vmacro18270' => 'vma', 'vmacro19142' => 'vma', 'vmacro19407' => 'vma', 'vmacro19408' => 'vma', 'vmacro21899' => 'vma', 'vmacro21900' => 'vma', 'vmacro21901' => 'vma', 'VMungo0251G0490' => 'vmu', 'VMungo0251G1748' => 'vmu', 'VMungo1309G0421' => 'vmu', 'Zm00001eb086500' => 'zma', 'Zm00001eb150680' => 'zma', 'Zm00001eb162330' => 'zma', 'Zm00001eb203130' => 'zma', 'Zm00001eb369480' => 'zma', 'Zm00001eb382340' => 'zma', 'Zm00001eb416360' => 'zma' ), 'gf_id' => 'HOM05D000902', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000902' ), 'data_identifier' => 'HOM05D000902', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000902', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '663', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02470' => 'bna', 'A01p16260' => 'bna', 'A02p01680' => 'bna', 'A03p16600' => 'bna', 'A03p55660' => 'bna', 'A03p64160' => 'bna', 'A03p64170' => 'bna', 'A08p31900' => 'bna', 'A09p59530' => 'bna', 'A10p08230' => 'bna', 'A10p25090' => 'bna', 'Aa31LG3G7100' => 'aar', 'Aa31LG3G7110' => 'aar', 'Aa31LG6G13160' => 'aar', 'Aa31LG7G10770' => 'aar', 'Aa31LG7G3830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2723' => 'aag', 'Actinidia08045' => 'ach', 'Actinidia08888' => 'ach', 'Actinidia18333' => 'ach', 'Actinidia19334' => 'ach', 'Actinidia25552' => 'ach', 'Actinidia26089' => 'ach', 'Actinidia30615' => 'ach', 'Actinidia30616' => 'ach', 'Actinidia33083' => 'ach', 'Actinidia35762' => 'ach', 'Ah.02g110620' => 'amhyb', 'Ah.11g046390' => 'amhyb', 'AL1G31670' => 'aly', 'AL6G23730' => 'aly', 'AL7G14740' => 'aly', 'AL7G14750' => 'aly', 'AL7G14760' => 'aly', 'AL7G28220' => 'aly', 'AL8G24940' => 'aly', 'Aqoxy3G01665' => 'aox', 'Aqoxy3G02853' => 'aox', 'Aqoxy5G01513' => 'aox', 'Aqoxy5G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8SKA4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ75LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKDA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0LJZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7REX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZP4YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWX7I5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2QKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS0L9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPCD8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q161UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC7XCF' => 'arhy', 'AT1G19100' => 'ath', 'AT4G24970' => 'ath', 'AT4G36270' => 'ath', 'AT4G36280' => 'ath', 'AT4G36290' => 'ath', 'AT5G13130' => 'ath', 'AT5G50780' => 'ath', 'ATR0582G266' => 'atr', 'ATR0661G195' => 'atr', 'ATR1152G031' => 'atr', 'Atru.chr11.2382' => 'acertr', 'Atru.chr12.2337' => 'acertr', 'Atru.chr3.744' => 'acertr', 'Atru.chr6.1870' => 'acertr', 'Atru.chr9.2515' => 'acertr', 'AUR62004120' => 'cqu', 'AUR62005667' => 'cqu', 'AUR62007634' => 'cqu', 'AUR62008186' => 'cqu', 'AUR62008187' => 'cqu', 'AUR62008188' => 'cqu', 'AUR62027954' => 'cqu', 'AUR62028766' => 'cqu', 'AUR62028767' => 'cqu', 'AUR62028768' => 'cqu', 'AUR62028886' => 'cqu', 'AUR62029563' => 'cqu', 'AUR62038832' => 'cqu', 'BcaB01g04149' => 'bca', 'BcaB03g12940' => 'bca', 'BcaB03g13090' => 'bca', 'BcaB03g14466' => 'bca', 'BcaB05g24035' => 'bca', 'BcaC01g06050' => 'bca', 'BcaC04g19148' => 'bca', 'BcaC04g20761' => 'bca', 'BcaC06g32845' => 'bca', 'BcaC07g41274' => 'bca', 'BcaC09g50827' => 'bca', 'BcaNung00741' => 'bca', 'BcaNung00742' => 'bca', 'BcaNung01859' => 'bca', 'BcaNung03985' => 'bca', 'BcaNung03989' => 'bca', 'BcaNung05661' => 'bca', 'BolC1t00257H' => 'bol', 'BolC1t01956H' => 'bol', 'BolC2t06534H' => 'bol', 'BolC3t14334H' => 'bol', 'BolC5t30451H' => 'bol', 'BolC7t45880H' => 'bol', 'BolC7t46586H' => 'bol', 'BolC8t49301H' => 'bol', 'BolC8t51837H' => 'bol', 'BolC9t56822H' => 'bol', 'BolC9t59235H' => 'bol', 'BraA01t00234Z' => 'bra', 'BraA01t01563Z' => 'bra', 'BraA02t05147Z' => 'bra', 'BraA03t10947Z' => 'bra', 'BraA03t14633Z' => 'bra', 'BraA08t35112Z' => 'bra', 'BraA09t41330Z' => 'bra', 'BraA10t44570Z' => 'bra', 'C01p02670' => 'bna', 'C01p20260' => 'bna', 'C02p05890' => 'bna', 'C03p19530' => 'bna', 'C05p17470' => 'bna', 'C07p53900' => 'bna', 'C07p61630' => 'bna', 'C08p16800' => 'bna', 'C08p42810' => 'bna', 'C09p39480' => 'bna', 'C09p63980' => 'bna', 'CAN.G1001.7' => 'can', 'CAN.G1034.55' => 'can', 'CAN.G143.7' => 'can', 'CAN.G3340.1' => 'can', 'CAN.G358.19' => 'can', 'CAN.G373.2' => 'can', 'CAN.G674.16' => 'can', 'CAN.G674.17' => 'can', 'CAN.G674.18' => 'can', 'CAN.G732.2' => 'can', 'CAN.G732.3' => 'can', 'CAN.G993.39' => 'can', 'CANSAT01G2052' => 'cansat', 'CANSAT80G0070' => 'cansat', 'CANSAT80G0483' => 'cansat', 'CANSAT80G0625' => 'cansat', 'CARHR019690' => 'chi', 'CARHR080280' => 'chi', 'CARHR152750' => 'chi', 'CARHR152760' => 'chi', 'CARHR152770' => 'chi', 'CARHR200340' => 'chi', 'CARHR232370' => 'chi', 'CARHR244670' => 'chi', 'CARHR244680' => 'chi', 'CARHR257520' => 'chi', 'Carub.0001s1872' => 'cru', 'Carub.0006s1130' => 'cru', 'Carub.0007s0396' => 'cru', 'Carub.0007s0397' => 'cru', 'Carub.0007s1608' => 'cru', 'Carub.0008s1068' => 'cru', 'Carub.0008s1077' => 'cru', 'Ca_16158_v3' => 'car', 'Ca_17571_v3' => 'car', 'Ca_21936_v3' => 'car', 'Ca_22350_v3' => 'car', 'CBR_g22445' => 'cbr', 'CBR_g26290' => 'cbr', 'Cc04_g09610' => 'ccan', 'Cc04_g12280' => 'ccan', 'Cc07_g10230' => 'ccan', 'CDE02G0093' => 'cde', 'CDE02G0701' => 'cde', 'CDE04G1050' => 'cde', 'CDE05G1833' => 'cde', 'CDE05G3058' => 'cde', 'CDE05G3380' => 'cde', 'CDE06G0536' => 'cde', 'Cfa006923' => 'cfa', 'Cfa009402' => 'cfa', 'Cfa018751' => 'cfa', 'Cfa019164' => 'cfa', 'Cfa022935' => 'cfa', 'Ciclev10019081m.g' => 'ccl', 'Ciclev10025076m.g' => 'ccl', 'Ciclev10030712m.g' => 'ccl', 'Ciclev10033760m.g' => 'ccl', 'CiPaw.05G105600' => 'cil', 'CiPaw.08G136700' => 'cil', 'CiPaw.11G003900' => 'cil', 'CiPaw.11G023700' => 'cil', 'CiPaw.12G003700' => 'cil', 'ClCG06G017100' => 'cla', 'ClCG06G018110' => 'cla', 'ClCG07G008800' => 'cla', 'ClCG07G015330' => 'cla', 'COL.COLO4_13698' => 'col', 'COL.COLO4_16659' => 'col', 'COL.COLO4_21986' => 'col', 'COL.COLO4_24049' => 'col', 'COL.COLO4_29061' => 'col', 'COL.COLO4_29075' => 'col', 'COL.COLO4_30094' => 'col', 'Cpa.g.c33689' => 'cpa', 'Cpa.g.sc108.39' => 'cpa', 'Cpa.g.sc108.41' => 'cpa', 'Cpa.g.sc1163.1' => 'cpa', 'Cpa.g.sc4.155' => 'cpa', 'Cpa.g.sc6.194' => 'cpa', 'CsaV3_1G000340' => 'csa', 'CsaV3_1G001400' => 'csa', 'CsaV3_4G002220' => 'csa', 'CsaV3_4G005370' => 'csa', 'CSS0007487' => 'camsi', 'CSS0008066' => 'camsi', 'CSS0009120' => 'camsi', 'CSS0015512' => 'camsi', 'CSS0022409' => 'camsi', 'CSS0025358' => 'camsi', 'CSS0044547' => 'camsi', 'DCAR_013057' => 'dca', 'DCAR_015058' => 'dca', 'DCAR_016027' => 'dca', 'DCAR_017327' => 'dca', 'DCAR_020743' => 'dca', 'DCAR_026157' => 'dca', 'DCAR_032339' => 'dca', 'DCAR_032340' => 'dca', 'Dinv11200' => 'din', 'Dinv11201' => 'din', 'Dinv20631' => 'din', 'Dinv23182' => 'din', 'Dinv33466' => 'din', 'Dinv33583' => 'din', 'Dinv38565' => 'din', 'Duzib068G0200' => 'dzi', 'Duzib147G0132' => 'dzi', 'Duzib147G0635' => 'dzi', 'Duzib205G1670' => 'dzi', 'Duzib251G0606' => 'dzi', 'ECA232G3336' => 'eca', 'ECA232G3763' => 'eca', 'ECA232G4845' => 'eca', 'ECA234G1607' => 'eca', 'ECA246G0932' => 'eca', 'ECA247G0781' => 'eca', 'ECA247G1932' => 'eca', 'ECA247G2079' => 'eca', 'ECA247G3338' => 'eca', 'ECA247G4115' => 'eca', 'EL10Ac3g06552' => 'bvu', 'EL10Ac5g10721' => 'bvu', 'EL10Ac5g10722' => 'bvu', 'EL10Ac5g10723' => 'bvu', 'EL10Ac5g11361' => 'bvu', 'EL10Ac6g13553' => 'bvu', 'EL10As8g23872' => 'bvu', 'Eucgr.B00250' => 'egr', 'Eucgr.B00251' => 'egr', 'Eucgr.B03533' => 'egr', 'Eucgr.I02381' => 'egr', 'Eucgr.K02700' => 'egr', 'FAN02G0174' => 'fan', 'FAN02G3146' => 'fan', 'FAN04G1672' => 'fan', 'FAN04G2273' => 'fan', 'FAN05G2791' => 'fan', 'FAN05G4035' => 'fan', 'FAN07G0834' => 'fan', 'FAN08G1198' => 'fan', 'FAN09G4182' => 'fan', 'FAN12G0496' => 'fan', 'FAN13G1027' => 'fan', 'FAN13G2951' => 'fan', 'FAN14G0705' => 'fan', 'FAN14G0720' => 'fan', 'FAN17G0201' => 'fan', 'FAN17G2665' => 'fan', 'FAN18G1456' => 'fan', 'FAN18G1525' => 'fan', 'FAN18G3500' => 'fan', 'FAN28G2670' => 'fan', 'FvH4_1g12391' => 'fve', 'FvH4_4g23220' => 'fve', 'FvH4_5g08810' => 'fve', 'FvH4_5g28960' => 'fve', 'FvH4_6g42820' => 'fve', 'FvH4_6g51110' => 'fve', 'Glyma.02G051802' => 'gma', 'Glyma.04G185300' => 'gma', 'Glyma.05G202900' => 'gma', 'Glyma.08G010300' => 'gma', 'Glyma.16G131900' => 'gma', 'Glyma.17G087900' => 'gma', 'Gohir.A07G048600' => 'ghi', 'Gohir.A11G179000' => 'ghi', 'Gohir.A12G140900' => 'ghi', 'Gohir.A12G140950' => 'ghi', 'Gohir.A12G191700' => 'ghi', 'Gohir.A13G086300' => 'ghi', 'Gohir.D07G052900' => 'ghi', 'Gohir.D11G186600' => 'ghi', 'Gohir.D12G145575' => 'ghi', 'Gohir.D12G145650' => 'ghi', 'Gohir.D12G145725' => 'ghi', 'Gohir.D12G194050' => 'ghi', 'Gohir.D13G091800' => 'ghi', 'Gorai.001G055900' => 'gra', 'Gorai.007G198400' => 'gra', 'Gorai.008G157000' => 'gra', 'Gorai.008G157100' => 'gra', 'Gorai.008G208700' => 'gra', 'Gorai.010G138700' => 'gra', 'GSVIVG01000977001' => 'vvi', 'GSVIVG01007708001' => 'vvi', 'GSVIVG01008587001' => 'vvi', 'GSVIVG01018849001' => 'vvi', 'GSVIVG01032432001' => 'vvi', 'HanXRQChr02g0034131' => 'han', 'HanXRQChr02g0035981' => 'han', 'HanXRQChr02g0035991' => 'han', 'HanXRQChr05g0155611' => 'han', 'HanXRQChr05g0155621' => 'han', 'HanXRQChr08g0236501' => 'han', 'HanXRQChr09g0261321' => 'han', 'HanXRQChr09g0272081' => 'han', 'HanXRQChr10g0310741' => 'han', 'HanXRQChr11g0325591' => 'han', 'HanXRQChr12g0385691' => 'han', 'HanXRQChr13g0387801' => 'han', 'HanXRQChr15g0463011' => 'han', 'Haze_03826' => 'cav', 'Haze_03827' => 'cav', 'Haze_07183' => 'cav', 'Haze_07537' => 'cav', 'Haze_07539' => 'cav', 'Haze_12461' => 'cav', 'Haze_16115' => 'cav', 'Haze_16808' => 'cav', 'Haze_18531' => 'cav', 'Hma1.2p1_0046F.1_g026700' => 'hma', 'Hma1.2p1_0046F.1_g026710' => 'hma', 'Hma1.2p1_0168F.1_g074340' => 'hma', 'Hma1.2p1_0266F.1_g107030' => 'hma', 'Hma1.2p1_0266F.1_g107060' => 'hma', 'Hma1.2p1_0275F.1_g110510' => 'hma', 'Hma1.2p1_0592F.1_g185490' => 'hma', 'Hma1.2p1_0592F.1_g185500' => 'hma', 'Hma1.2p1_0592F.1_g185510' => 'hma', 'Hma1.2p1_0592F.1_g185520' => 'hma', 'Hma1.2p1_0592F.1_g185530' => 'hma', 'Hma1.2p1_0818F.1_g223450' => 'hma', 'HPP92_009708' => 'vpl', 'HPP92_009793' => 'vpl', 'HPP92_009796' => 'vpl', 'HPP92_009797' => 'vpl', 'HPP92_014940' => 'vpl', 'HPP92_014988' => 'vpl', 'Hund02463' => 'sun', 'Hund02760' => 'sun', 'Hund05071' => 'sun', 'Hund10108' => 'sun', 'Hund11204' => 'sun', 'Hund14016' => 'sun', 'Hund16464' => 'sun', 'Lalb_Chr09g0333391' => 'lal', 'Lalb_Chr11g0070461' => 'lal', 'Lalb_Chr12g0201671' => 'lal', 'Lalb_Chr13g0297161' => 'lal', 'Lj1g0002823' => 'lja', 'Lj3C1074T6' => 'lonja', 'Lj4A212T28' => 'lonja', 'Lj4g0005516' => 'lja', 'Lj4g0013705' => 'lja', 'Lj4g0027865' => 'lja', 'Lj5C92G16' => 'lonja', 'Lj5C92T12' => 'lonja', 'Lj7C596T3' => 'lonja', 'Lj9A446G59' => 'lonja', 'Lj9A482G21' => 'lonja', 'Lsat_1_v5_gn_1_28261' => 'lsa', 'Lsat_1_v5_gn_1_28281' => 'lsa', 'Lsat_1_v5_gn_1_32721' => 'lsa', 'Lsat_1_v5_gn_4_151760' => 'lsa', 'Lsat_1_v5_gn_4_2120' => 'lsa', 'Lsat_1_v5_gn_4_75761' => 'lsa', 'Lsat_1_v5_gn_5_10920' => 'lsa', 'Manes.02G099900' => 'mes', 'Manes.11G096200' => 'mes', 'Manes.12G007200' => 'mes', 'Manes.14G048300' => 'mes', 'Manes.17G114700' => 'mes', 'Mapoly0002s0070' => 'mpo', 'Mapoly0029s0099' => 'mpo', 'MBI07_g24742_MAGBIO' => 'mbi', 'MBI10_g27988_MAGBIO' => 'mbi', 'MBI11_g13057_MAGBIO' => 'mbi', 'MD02G1137200' => 'mdo', 'MD06G1137200' => 'mdo', 'MD07G1122300' => 'mdo', 'MD09G1078200' => 'mdo', 'MD13G1123700' => 'mdo', 'MD14G1151900' => 'mdo', 'MD17G1030900' => 'mdo', 'MD17G1068200' => 'mdo', 'MD17G1068600' => 'mdo', 'Medtr3g077540' => 'mtr', 'Medtr4g105530' => 'mtr', 'Medtr8g076580' => 'mtr', 'Medtr8g076590' => 'mtr', 'Medtr8g096410' => 'mtr', 'MELO3C016411.2' => 'cme', 'MELO3C017780.2' => 'cme', 'MELO3C022560.2' => 'cme', 'MELO3C026187.2' => 'cme', 'MELO3C026286.2' => 'cme', 'MELO3C032854.2' => 'cme', 'Migut.H02495' => 'egut', 'Migut.I00561' => 'egut', 'Migut.K01015' => 'egut', 'Migut.K01016' => 'egut', 'Migut.L00743' => 'egut', 'Migut.L00744' => 'egut', 'Migut.L00746' => 'egut', 'Migut.L00798' => 'egut', 'Migut.L00799' => 'egut', 'Migut.N02096' => 'egut', 'MSTRG.11259' => 'ama', 'MSTRG.23142' => 'ama', 'MSTRG.2499' => 'ama', 'Nitab4.5_0000003g0730' => 'nta', 'Nitab4.5_0000137g0020' => 'nta', 'Nitab4.5_0000721g0210' => 'nta', 'Nitab4.5_0000723g0050' => 'nta', 'Nitab4.5_0000913g0070' => 'nta', 'Nitab4.5_0001332g0040' => 'nta', 'Nitab4.5_0001771g0050' => 'nta', 'Nitab4.5_0001918g0050' => 'nta', 'Nitab4.5_0002686g0030' => 'nta', 'Nitab4.5_0003156g0020' => 'nta', 'Nitab4.5_0003383g0040' => 'nta', 'Nitab4.5_0003918g0010' => 'nta', 'Nitab4.5_0006760g0010' => 'nta', 'Nn1g05981' => 'nnu', 'Nn1g06288' => 'nnu', 'Nn3g16371' => 'nnu', 'Nn3g16786' => 'nnu', 'Nn4g22232' => 'nnu', 'Oeu005144.1' => 'oeu', 'Oeu005145.1' => 'oeu', 'Oeu011348.1' => 'oeu', 'Oeu016415.1' => 'oeu', 'Oeu023501.1' => 'oeu', 'Oeu044473.1' => 'oeu', 'Oeu048892.2' => 'oeu', 'Os01g0549200' => 'osa', 'Os02g0469300' => 'osa', 'Os04g0311100' => 'osa', 'Os06g0474900' => 'osa', 'Os10g0181700' => 'osa', 'Os11g0454800' => 'osa', 'Peaxi162Scf00037g00714' => 'pax', 'Peaxi162Scf00084g01217' => 'pax', 'Peaxi162Scf00257g00217' => 'pax', 'Peaxi162Scf00516g00215' => 'pax', 'Peaxi162Scf00689g00123' => 'pax', 'PGR044G2719' => 'pgr', 'PGR083G1360' => 'pgr', 'PGR102G2849' => 'pgr', 'PGR119G2534' => 'pgr', 'PGSC0003DMG400003538' => 'stu', 'PGSC0003DMG400028138' => 'stu', 'PGSC0003DMG400031732' => 'stu', 'PGSC0003DMG400038165' => 'stu', 'Phvul.002G284600' => 'pvu', 'Phvul.003G258200' => 'pvu', 'Phvul.009G176500' => 'pvu', 'Potri.003G167201' => 'ptr', 'Potri.005G118400' => 'ptr', 'Potri.012G089000' => 'ptr', 'Potri.012G102800' => 'ptr', 'Potri.015G079400' => 'ptr', 'Potri.015G100900' => 'ptr', 'Pp3c14_9810' => 'ppa', 'Pp3c15_10450' => 'ppa', 'Pp3c20_19150' => 'ppa', 'Pp3c23_12740' => 'ppa', 'Pp3c23_6310' => 'ppa', 'Pp3c24_3720' => 'ppa', 'Pp3c27_2580' => 'ppa', 'Pp3c9_8990' => 'ppa', 'PRCOL_00002854' => 'pco', 'Prupe.1G221200' => 'ppe', 'Prupe.3G289000' => 'ppe', 'Prupe.5G147000' => 'ppe', 'Prupe.6G157300' => 'ppe', 'Prupe.7G163400' => 'ppe', 'Psat0s2177g0040' => 'psa', 'Psat3g174760' => 'psa', 'Psat3g192160' => 'psa', 'Psat4g058520' => 'psa', 'Psat4g096840' => 'psa', 'Psat7g037320' => 'psa', 'PSO017G1274' => 'pso', 'PSO017G5166' => 'pso', 'PSO063G4558' => 'pso', 'PSO170G4458' => 'pso', 'PSO170G5005' => 'pso', 'PSO210G6156' => 'pso', 'PSO210G6635' => 'pso', 'PSO210G7397' => 'pso', 'PSO210G7700' => 'pso', 'PSO455G0035' => 'pso', 'PSO455G0180' => 'pso', 'PSO478G4515' => 'pso', 'PSO832G1305' => 'pso', 'PSO832G3489' => 'pso', 'QL02p075247' => 'qlo', 'QL03p051148' => 'qlo', 'QL05p010313' => 'qlo', 'QL06p034627' => 'qlo', 'QL10p001889' => 'qlo', 'QL10p010846' => 'qlo', 'RcHm_v2.0_Chr1g0350621' => 'rch', 'RcHm_v2.0_Chr1g0350641' => 'rch', 'RcHm_v2.0_Chr2g0092891' => 'rch', 'RcHm_v2.0_Chr2g0100251' => 'rch', 'RcHm_v2.0_Chr2g0158661' => 'rch', 'RcHm_v2.0_Chr2g0172741' => 'rch', 'RcHm_v2.0_Chr4g0429571' => 'rch', 'RcHm_v2.0_Chr5g0042471' => 'rch', 'RcHm_v2.0_Chr7g0189451' => 'rch', 'Rhsim08G0052000' => 'rsi', 'Rhsim08G0174400' => 'rsi', 'Rhsim08G0193200' => 'rsi', 'Rhsim10G0214800' => 'rsi', 'Rhsim10G0214900' => 'rsi', 'Rhsim10G0215000' => 'rsi', 'Rhsim12G0022900' => 'rsi', 'Rhsim12G0177500' => 'rsi', 'Rhsim12G0177700' => 'rsi', 'Sabra03G0122600' => 'sbr', 'Sabra05G0097400' => 'sbr', 'Sabra12G0064100' => 'sbr', 'Sabra15G0121300' => 'sbr', 'SalBow2G0642' => 'sbo', 'SalBow5G2667' => 'sbo', 'SalBow5G4873' => 'sbo', 'SalBow8G2395' => 'sbo', 'Sc03g0003290' => 'sci', 'Sc10g0010130' => 'sci', 'Sc22g0003650' => 'sci', 'Sed0001603' => 'sed', 'Sed0004259' => 'sed', 'Sed0006789' => 'sed', 'Sed0011838' => 'sed', 'Sed0012964' => 'sed', 'Sed0016383' => 'sed', 'Sed0019010' => 'sed', 'Sed0020188' => 'sed', 'SEGI_04702' => 'sgi', 'SEGI_17231' => 'sgi', 'SEGI_18877' => 'sgi', 'SEGI_25196' => 'sgi', 'SEGI_25515' => 'sgi', 'SEGI_28445' => 'sgi', 'SEGI_37452' => 'sgi', 'SGA_v2.0_scaffold188G40336' => 'sas', 'SGA_v2.0_scaffold228G43247' => 'sas', 'SGA_v2.0_scaffold280G46853' => 'sas', 'SGA_v2.0_scaffold34G13808' => 'sas', 'SGA_v2.0_scaffold40G15576' => 'sas', 'SGA_v2.0_scaffold611G53188' => 'sas', 'SGA_v2.0_scaffold78G25461' => 'sas', 'SGA_v2.0_scaffold90G27888' => 'sas', 'SHI08601' => 'shi', 'SHI08606' => 'shi', 'SHI17117' => 'shi', 'SHI17119' => 'shi', 'SMO118G0201' => 'smo', 'SMO169G0247' => 'smo', 'SMO176G0006' => 'smo', 'SMO176G0015' => 'smo', 'SMO202G0006' => 'smo', 'SMO240G0050' => 'smo', 'SMO286G0009' => 'smo', 'SMO338G0033' => 'smo', 'SMO356G0533' => 'smo', 'SMO364G0382' => 'smo', 'SMO367G0166' => 'smo', 'SMO367G1098' => 'smo', 'Solyc01g009920.3' => 'sly', 'Solyc01g099300.3' => 'sly', 'Solyc02g084700.3' => 'sly', 'Solyc03g097520.3' => 'sly', 'Solyc06g071580.3' => 'sly', 'Solyc10g081760.3' => 'sly', 'Sopen01g005480' => 'spe', 'Sopen01g042850' => 'spe', 'Sopen02g029370' => 'spe', 'Sopen03g028280' => 'spe', 'Sopen06g027870' => 'spe', 'Sopen10g032270' => 'spe', 'Sp5g18180' => 'spa', 'Sp6g12880' => 'spa', 'Sp6g30850' => 'spa', 'Sp7g22960' => 'spa', 'Sp7g34010' => 'spa', 'SpUn1326_0010' => 'spa', 'TAR371G0242' => 'tar', 'TAR622G0638' => 'tar', 'TAR628G1548' => 'tar', 'TAR629G1079' => 'tar', 'TAR629G3413' => 'tar', 'THA.LOC104804249' => 'tha', 'THA.LOC104808315' => 'tha', 'THA.LOC104809238' => 'tha', 'THA.LOC104825484' => 'tha', 'Thecc.01G025500' => 'tca', 'Thecc.03G015800' => 'tca', 'Thecc.03G018000' => 'tca', 'Thecc.03G134800' => 'tca', 'Thecc.04G014700' => 'tca', 'Thhalv10006991m.g' => 'esa', 'Thhalv10012707m.g' => 'esa', 'Thhalv10015739m.g' => 'esa', 'Thhalv10024553m.g' => 'esa', 'Thhalv10024673m.g' => 'esa', 'Thhalv10029187m.g' => 'esa', 'TPR.G12971' => 'tpr', 'TPR.G29396' => 'tpr', 'TPR.G33376' => 'tpr', 'TPR.G35508' => 'tpr', 'TPR.G35516' => 'tpr', 'TPR.G37317' => 'tpr', 'TPR.G37389' => 'tpr', 'TPR.G37523' => 'tpr', 'TPR.G559' => 'tpr', 'TWI14G0070' => 'twi', 'TWI14G0729' => 'twi', 'TWI18G0596' => 'twi', 'TWI39G0780' => 'twi', 'TWI39G0850' => 'twi', 'TWI73G1052' => 'twi', 'unitig_52.g17485' => 'ugi', 'unitig_61.g26355' => 'ugi', 'vmacro01040' => 'vma', 'vmacro16731' => 'vma', 'vmacro18270' => 'vma', 'vmacro19142' => 'vma', 'vmacro19407' => 'vma', 'vmacro19408' => 'vma', 'vmacro21899' => 'vma', 'vmacro21900' => 'vma', 'vmacro21901' => 'vma', 'VMungo0251G0490' => 'vmu', 'VMungo0251G1748' => 'vmu', 'VMungo1309G0421' => 'vmu', 'Zm00001eb086500' => 'zma', 'Zm00001eb150680' => 'zma', 'Zm00001eb162330' => 'zma', 'Zm00001eb203130' => 'zma', 'Zm00001eb369480' => 'zma', 'Zm00001eb382340' => 'zma', 'Zm00001eb416360' => 'zma' ) $gf_id = 'HOM05D000902' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000902' ) $data_identifier = 'HOM05D000902' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 13, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 10, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 6, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 9, 'hma' => (int) 12, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 4, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 6, 'ppa' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 6, 'rch' => (int) 9, 'rsi' => (int) 9, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 12, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 3, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416360' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000902', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '663', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02470' => 'bna', 'A01p16260' => 'bna', 'A02p01680' => 'bna', 'A03p16600' => 'bna', 'A03p55660' => 'bna', 'A03p64160' => 'bna', 'A03p64170' => 'bna', 'A08p31900' => 'bna', 'A09p59530' => 'bna', 'A10p08230' => 'bna', 'A10p25090' => 'bna', 'Aa31LG3G7100' => 'aar', 'Aa31LG3G7110' => 'aar', 'Aa31LG6G13160' => 'aar', 'Aa31LG7G10770' => 'aar', 'Aa31LG7G3830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2723' => 'aag', 'Actinidia08045' => 'ach', 'Actinidia08888' => 'ach', 'Actinidia18333' => 'ach', 'Actinidia19334' => 'ach', 'Actinidia25552' => 'ach', 'Actinidia26089' => 'ach', 'Actinidia30615' => 'ach', 'Actinidia30616' => 'ach', 'Actinidia33083' => 'ach', 'Actinidia35762' => 'ach', 'Ah.02g110620' => 'amhyb', 'Ah.11g046390' => 'amhyb', 'AL1G31670' => 'aly', 'AL6G23730' => 'aly', 'AL7G14740' => 'aly', 'AL7G14750' => 'aly', 'AL7G14760' => 'aly', 'AL7G28220' => 'aly', 'AL8G24940' => 'aly', 'Aqoxy3G01665' => 'aox', 'Aqoxy3G02853' => 'aox', 'Aqoxy5G01513' => 'aox', 'Aqoxy5G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8SKA4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ75LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKDA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0LJZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7REX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZP4YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWX7I5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2QKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS0L9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPCD8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q161UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC7XCF' => 'arhy', 'AT1G19100' => 'ath', 'AT4G24970' => 'ath', 'AT4G36270' => 'ath', 'AT4G36280' => 'ath', 'AT4G36290' => 'ath', 'AT5G13130' => 'ath', 'AT5G50780' => 'ath', 'ATR0582G266' => 'atr', 'ATR0661G195' => 'atr', 'ATR1152G031' => 'atr', 'Atru.chr11.2382' => 'acertr', 'Atru.chr12.2337' => 'acertr', 'Atru.chr3.744' => 'acertr', 'Atru.chr6.1870' => 'acertr', 'Atru.chr9.2515' => 'acertr', 'AUR62004120' => 'cqu', 'AUR62005667' => 'cqu', 'AUR62007634' => 'cqu', 'AUR62008186' => 'cqu', 'AUR62008187' => 'cqu', 'AUR62008188' => 'cqu', 'AUR62027954' => 'cqu', 'AUR62028766' => 'cqu', 'AUR62028767' => 'cqu', 'AUR62028768' => 'cqu', 'AUR62028886' => 'cqu', 'AUR62029563' => 'cqu', 'AUR62038832' => 'cqu', 'BcaB01g04149' => 'bca', 'BcaB03g12940' => 'bca', 'BcaB03g13090' => 'bca', 'BcaB03g14466' => 'bca', 'BcaB05g24035' => 'bca', 'BcaC01g06050' => 'bca', 'BcaC04g19148' => 'bca', 'BcaC04g20761' => 'bca', 'BcaC06g32845' => 'bca', 'BcaC07g41274' => 'bca', 'BcaC09g50827' => 'bca', 'BcaNung00741' => 'bca', 'BcaNung00742' => 'bca', 'BcaNung01859' => 'bca', 'BcaNung03985' => 'bca', 'BcaNung03989' => 'bca', 'BcaNung05661' => 'bca', 'BolC1t00257H' => 'bol', 'BolC1t01956H' => 'bol', 'BolC2t06534H' => 'bol', 'BolC3t14334H' => 'bol', 'BolC5t30451H' => 'bol', 'BolC7t45880H' => 'bol', 'BolC7t46586H' => 'bol', 'BolC8t49301H' => 'bol', 'BolC8t51837H' => 'bol', 'BolC9t56822H' => 'bol', 'BolC9t59235H' => 'bol', 'BraA01t00234Z' => 'bra', 'BraA01t01563Z' => 'bra', 'BraA02t05147Z' => 'bra', 'BraA03t10947Z' => 'bra', 'BraA03t14633Z' => 'bra', 'BraA08t35112Z' => 'bra', 'BraA09t41330Z' => 'bra', 'BraA10t44570Z' => 'bra', 'C01p02670' => 'bna', 'C01p20260' => 'bna', 'C02p05890' => 'bna', 'C03p19530' => 'bna', 'C05p17470' => 'bna', 'C07p53900' => 'bna', 'C07p61630' => 'bna', 'C08p16800' => 'bna', 'C08p42810' => 'bna', 'C09p39480' => 'bna', 'C09p63980' => 'bna', 'CAN.G1001.7' => 'can', 'CAN.G1034.55' => 'can', 'CAN.G143.7' => 'can', 'CAN.G3340.1' => 'can', 'CAN.G358.19' => 'can', 'CAN.G373.2' => 'can', 'CAN.G674.16' => 'can', 'CAN.G674.17' => 'can', 'CAN.G674.18' => 'can', 'CAN.G732.2' => 'can', 'CAN.G732.3' => 'can', 'CAN.G993.39' => 'can', 'CANSAT01G2052' => 'cansat', 'CANSAT80G0070' => 'cansat', 'CANSAT80G0483' => 'cansat', 'CANSAT80G0625' => 'cansat', 'CARHR019690' => 'chi', 'CARHR080280' => 'chi', 'CARHR152750' => 'chi', 'CARHR152760' => 'chi', 'CARHR152770' => 'chi', 'CARHR200340' => 'chi', 'CARHR232370' => 'chi', 'CARHR244670' => 'chi', 'CARHR244680' => 'chi', 'CARHR257520' => 'chi', 'Carub.0001s1872' => 'cru', 'Carub.0006s1130' => 'cru', 'Carub.0007s0396' => 'cru', 'Carub.0007s0397' => 'cru', 'Carub.0007s1608' => 'cru', 'Carub.0008s1068' => 'cru', 'Carub.0008s1077' => 'cru', 'Ca_16158_v3' => 'car', 'Ca_17571_v3' => 'car', 'Ca_21936_v3' => 'car', 'Ca_22350_v3' => 'car', 'CBR_g22445' => 'cbr', 'CBR_g26290' => 'cbr', 'Cc04_g09610' => 'ccan', 'Cc04_g12280' => 'ccan', 'Cc07_g10230' => 'ccan', 'CDE02G0093' => 'cde', 'CDE02G0701' => 'cde', 'CDE04G1050' => 'cde', 'CDE05G1833' => 'cde', 'CDE05G3058' => 'cde', 'CDE05G3380' => 'cde', 'CDE06G0536' => 'cde', 'Cfa006923' => 'cfa', 'Cfa009402' => 'cfa', 'Cfa018751' => 'cfa', 'Cfa019164' => 'cfa', 'Cfa022935' => 'cfa', 'Ciclev10019081m.g' => 'ccl', 'Ciclev10025076m.g' => 'ccl', 'Ciclev10030712m.g' => 'ccl', 'Ciclev10033760m.g' => 'ccl', 'CiPaw.05G105600' => 'cil', 'CiPaw.08G136700' => 'cil', 'CiPaw.11G003900' => 'cil', 'CiPaw.11G023700' => 'cil', 'CiPaw.12G003700' => 'cil', 'ClCG06G017100' => 'cla', 'ClCG06G018110' => 'cla', 'ClCG07G008800' => 'cla', 'ClCG07G015330' => 'cla', 'COL.COLO4_13698' => 'col', 'COL.COLO4_16659' => 'col', 'COL.COLO4_21986' => 'col', 'COL.COLO4_24049' => 'col', 'COL.COLO4_29061' => 'col', 'COL.COLO4_29075' => 'col', 'COL.COLO4_30094' => 'col', 'Cpa.g.c33689' => 'cpa', 'Cpa.g.sc108.39' => 'cpa', 'Cpa.g.sc108.41' => 'cpa', 'Cpa.g.sc1163.1' => 'cpa', 'Cpa.g.sc4.155' => 'cpa', 'Cpa.g.sc6.194' => 'cpa', 'CsaV3_1G000340' => 'csa', 'CsaV3_1G001400' => 'csa', 'CsaV3_4G002220' => 'csa', 'CsaV3_4G005370' => 'csa', 'CSS0007487' => 'camsi', 'CSS0008066' => 'camsi', 'CSS0009120' => 'camsi', 'CSS0015512' => 'camsi', 'CSS0022409' => 'camsi', 'CSS0025358' => 'camsi', 'CSS0044547' => 'camsi', 'DCAR_013057' => 'dca', 'DCAR_015058' => 'dca', 'DCAR_016027' => 'dca', 'DCAR_017327' => 'dca', 'DCAR_020743' => 'dca', 'DCAR_026157' => 'dca', 'DCAR_032339' => 'dca', 'DCAR_032340' => 'dca', 'Dinv11200' => 'din', 'Dinv11201' => 'din', 'Dinv20631' => 'din', 'Dinv23182' => 'din', 'Dinv33466' => 'din', 'Dinv33583' => 'din', 'Dinv38565' => 'din', 'Duzib068G0200' => 'dzi', 'Duzib147G0132' => 'dzi', 'Duzib147G0635' => 'dzi', 'Duzib205G1670' => 'dzi', 'Duzib251G0606' => 'dzi', 'ECA232G3336' => 'eca', 'ECA232G3763' => 'eca', 'ECA232G4845' => 'eca', 'ECA234G1607' => 'eca', 'ECA246G0932' => 'eca', 'ECA247G0781' => 'eca', 'ECA247G1932' => 'eca', 'ECA247G2079' => 'eca', 'ECA247G3338' => 'eca', 'ECA247G4115' => 'eca', 'EL10Ac3g06552' => 'bvu', 'EL10Ac5g10721' => 'bvu', 'EL10Ac5g10722' => 'bvu', 'EL10Ac5g10723' => 'bvu', 'EL10Ac5g11361' => 'bvu', 'EL10Ac6g13553' => 'bvu', 'EL10As8g23872' => 'bvu', 'Eucgr.B00250' => 'egr', 'Eucgr.B00251' => 'egr', 'Eucgr.B03533' => 'egr', 'Eucgr.I02381' => 'egr', 'Eucgr.K02700' => 'egr', 'FAN02G0174' => 'fan', 'FAN02G3146' => 'fan', 'FAN04G1672' => 'fan', 'FAN04G2273' => 'fan', 'FAN05G2791' => 'fan', 'FAN05G4035' => 'fan', 'FAN07G0834' => 'fan', 'FAN08G1198' => 'fan', 'FAN09G4182' => 'fan', 'FAN12G0496' => 'fan', 'FAN13G1027' => 'fan', 'FAN13G2951' => 'fan', 'FAN14G0705' => 'fan', 'FAN14G0720' => 'fan', 'FAN17G0201' => 'fan', 'FAN17G2665' => 'fan', 'FAN18G1456' => 'fan', 'FAN18G1525' => 'fan', 'FAN18G3500' => 'fan', 'FAN28G2670' => 'fan', 'FvH4_1g12391' => 'fve', 'FvH4_4g23220' => 'fve', 'FvH4_5g08810' => 'fve', 'FvH4_5g28960' => 'fve', 'FvH4_6g42820' => 'fve', 'FvH4_6g51110' => 'fve', 'Glyma.02G051802' => 'gma', 'Glyma.04G185300' => 'gma', 'Glyma.05G202900' => 'gma', 'Glyma.08G010300' => 'gma', 'Glyma.16G131900' => 'gma', 'Glyma.17G087900' => 'gma', 'Gohir.A07G048600' => 'ghi', 'Gohir.A11G179000' => 'ghi', 'Gohir.A12G140900' => 'ghi', 'Gohir.A12G140950' => 'ghi', 'Gohir.A12G191700' => 'ghi', 'Gohir.A13G086300' => 'ghi', 'Gohir.D07G052900' => 'ghi', 'Gohir.D11G186600' => 'ghi', 'Gohir.D12G145575' => 'ghi', 'Gohir.D12G145650' => 'ghi', 'Gohir.D12G145725' => 'ghi', 'Gohir.D12G194050' => 'ghi', 'Gohir.D13G091800' => 'ghi', 'Gorai.001G055900' => 'gra', 'Gorai.007G198400' => 'gra', 'Gorai.008G157000' => 'gra', 'Gorai.008G157100' => 'gra', 'Gorai.008G208700' => 'gra', 'Gorai.010G138700' => 'gra', 'GSVIVG01000977001' => 'vvi', 'GSVIVG01007708001' => 'vvi', 'GSVIVG01008587001' => 'vvi', 'GSVIVG01018849001' => 'vvi', 'GSVIVG01032432001' => 'vvi', 'HanXRQChr02g0034131' => 'han', 'HanXRQChr02g0035981' => 'han', 'HanXRQChr02g0035991' => 'han', 'HanXRQChr05g0155611' => 'han', 'HanXRQChr05g0155621' => 'han', 'HanXRQChr08g0236501' => 'han', 'HanXRQChr09g0261321' => 'han', 'HanXRQChr09g0272081' => 'han', 'HanXRQChr10g0310741' => 'han', 'HanXRQChr11g0325591' => 'han', 'HanXRQChr12g0385691' => 'han', 'HanXRQChr13g0387801' => 'han', 'HanXRQChr15g0463011' => 'han', 'Haze_03826' => 'cav', 'Haze_03827' => 'cav', 'Haze_07183' => 'cav', 'Haze_07537' => 'cav', 'Haze_07539' => 'cav', 'Haze_12461' => 'cav', 'Haze_16115' => 'cav', 'Haze_16808' => 'cav', 'Haze_18531' => 'cav', 'Hma1.2p1_0046F.1_g026700' => 'hma', 'Hma1.2p1_0046F.1_g026710' => 'hma', 'Hma1.2p1_0168F.1_g074340' => 'hma', 'Hma1.2p1_0266F.1_g107030' => 'hma', 'Hma1.2p1_0266F.1_g107060' => 'hma', 'Hma1.2p1_0275F.1_g110510' => 'hma', 'Hma1.2p1_0592F.1_g185490' => 'hma', 'Hma1.2p1_0592F.1_g185500' => 'hma', 'Hma1.2p1_0592F.1_g185510' => 'hma', 'Hma1.2p1_0592F.1_g185520' => 'hma', 'Hma1.2p1_0592F.1_g185530' => 'hma', 'Hma1.2p1_0818F.1_g223450' => 'hma', 'HPP92_009708' => 'vpl', 'HPP92_009793' => 'vpl', 'HPP92_009796' => 'vpl', 'HPP92_009797' => 'vpl', 'HPP92_014940' => 'vpl', 'HPP92_014988' => 'vpl', 'Hund02463' => 'sun', 'Hund02760' => 'sun', 'Hund05071' => 'sun', 'Hund10108' => 'sun', 'Hund11204' => 'sun', 'Hund14016' => 'sun', 'Hund16464' => 'sun', 'Lalb_Chr09g0333391' => 'lal', 'Lalb_Chr11g0070461' => 'lal', 'Lalb_Chr12g0201671' => 'lal', 'Lalb_Chr13g0297161' => 'lal', 'Lj1g0002823' => 'lja', 'Lj3C1074T6' => 'lonja', 'Lj4A212T28' => 'lonja', 'Lj4g0005516' => 'lja', 'Lj4g0013705' => 'lja', 'Lj4g0027865' => 'lja', 'Lj5C92G16' => 'lonja', 'Lj5C92T12' => 'lonja', 'Lj7C596T3' => 'lonja', 'Lj9A446G59' => 'lonja', 'Lj9A482G21' => 'lonja', 'Lsat_1_v5_gn_1_28261' => 'lsa', 'Lsat_1_v5_gn_1_28281' => 'lsa', 'Lsat_1_v5_gn_1_32721' => 'lsa', 'Lsat_1_v5_gn_4_151760' => 'lsa', 'Lsat_1_v5_gn_4_2120' => 'lsa', 'Lsat_1_v5_gn_4_75761' => 'lsa', 'Lsat_1_v5_gn_5_10920' => 'lsa', 'Manes.02G099900' => 'mes', 'Manes.11G096200' => 'mes', 'Manes.12G007200' => 'mes', 'Manes.14G048300' => 'mes', 'Manes.17G114700' => 'mes', 'Mapoly0002s0070' => 'mpo', 'Mapoly0029s0099' => 'mpo', 'MBI07_g24742_MAGBIO' => 'mbi', 'MBI10_g27988_MAGBIO' => 'mbi', 'MBI11_g13057_MAGBIO' => 'mbi', 'MD02G1137200' => 'mdo', 'MD06G1137200' => 'mdo', 'MD07G1122300' => 'mdo', 'MD09G1078200' => 'mdo', 'MD13G1123700' => 'mdo', 'MD14G1151900' => 'mdo', 'MD17G1030900' => 'mdo', 'MD17G1068200' => 'mdo', 'MD17G1068600' => 'mdo', 'Medtr3g077540' => 'mtr', 'Medtr4g105530' => 'mtr', 'Medtr8g076580' => 'mtr', 'Medtr8g076590' => 'mtr', 'Medtr8g096410' => 'mtr', 'MELO3C016411.2' => 'cme', 'MELO3C017780.2' => 'cme', 'MELO3C022560.2' => 'cme', 'MELO3C026187.2' => 'cme', 'MELO3C026286.2' => 'cme', 'MELO3C032854.2' => 'cme', 'Migut.H02495' => 'egut', 'Migut.I00561' => 'egut', 'Migut.K01015' => 'egut', 'Migut.K01016' => 'egut', 'Migut.L00743' => 'egut', 'Migut.L00744' => 'egut', 'Migut.L00746' => 'egut', 'Migut.L00798' => 'egut', 'Migut.L00799' => 'egut', 'Migut.N02096' => 'egut', 'MSTRG.11259' => 'ama', 'MSTRG.23142' => 'ama', 'MSTRG.2499' => 'ama', 'Nitab4.5_0000003g0730' => 'nta', 'Nitab4.5_0000137g0020' => 'nta', 'Nitab4.5_0000721g0210' => 'nta', 'Nitab4.5_0000723g0050' => 'nta', 'Nitab4.5_0000913g0070' => 'nta', 'Nitab4.5_0001332g0040' => 'nta', 'Nitab4.5_0001771g0050' => 'nta', 'Nitab4.5_0001918g0050' => 'nta', 'Nitab4.5_0002686g0030' => 'nta', 'Nitab4.5_0003156g0020' => 'nta', 'Nitab4.5_0003383g0040' => 'nta', 'Nitab4.5_0003918g0010' => 'nta', 'Nitab4.5_0006760g0010' => 'nta', 'Nn1g05981' => 'nnu', 'Nn1g06288' => 'nnu', 'Nn3g16371' => 'nnu', 'Nn3g16786' => 'nnu', 'Nn4g22232' => 'nnu', 'Oeu005144.1' => 'oeu', 'Oeu005145.1' => 'oeu', 'Oeu011348.1' => 'oeu', 'Oeu016415.1' => 'oeu', 'Oeu023501.1' => 'oeu', 'Oeu044473.1' => 'oeu', 'Oeu048892.2' => 'oeu', 'Os01g0549200' => 'osa', 'Os02g0469300' => 'osa', 'Os04g0311100' => 'osa', 'Os06g0474900' => 'osa', 'Os10g0181700' => 'osa', 'Os11g0454800' => 'osa', 'Peaxi162Scf00037g00714' => 'pax', 'Peaxi162Scf00084g01217' => 'pax', 'Peaxi162Scf00257g00217' => 'pax', 'Peaxi162Scf00516g00215' => 'pax', 'Peaxi162Scf00689g00123' => 'pax', 'PGR044G2719' => 'pgr', 'PGR083G1360' => 'pgr', 'PGR102G2849' => 'pgr', 'PGR119G2534' => 'pgr', 'PGSC0003DMG400003538' => 'stu', 'PGSC0003DMG400028138' => 'stu', 'PGSC0003DMG400031732' => 'stu', 'PGSC0003DMG400038165' => 'stu', 'Phvul.002G284600' => 'pvu', 'Phvul.003G258200' => 'pvu', 'Phvul.009G176500' => 'pvu', 'Potri.003G167201' => 'ptr', 'Potri.005G118400' => 'ptr', 'Potri.012G089000' => 'ptr', 'Potri.012G102800' => 'ptr', 'Potri.015G079400' => 'ptr', 'Potri.015G100900' => 'ptr', 'Pp3c14_9810' => 'ppa', 'Pp3c15_10450' => 'ppa', 'Pp3c20_19150' => 'ppa', 'Pp3c23_12740' => 'ppa', 'Pp3c23_6310' => 'ppa', 'Pp3c24_3720' => 'ppa', 'Pp3c27_2580' => 'ppa', 'Pp3c9_8990' => 'ppa', 'PRCOL_00002854' => 'pco', 'Prupe.1G221200' => 'ppe', 'Prupe.3G289000' => 'ppe', 'Prupe.5G147000' => 'ppe', 'Prupe.6G157300' => 'ppe', 'Prupe.7G163400' => 'ppe', 'Psat0s2177g0040' => 'psa', 'Psat3g174760' => 'psa', 'Psat3g192160' => 'psa', 'Psat4g058520' => 'psa', 'Psat4g096840' => 'psa', 'Psat7g037320' => 'psa', 'PSO017G1274' => 'pso', 'PSO017G5166' => 'pso', 'PSO063G4558' => 'pso', 'PSO170G4458' => 'pso', 'PSO170G5005' => 'pso', 'PSO210G6156' => 'pso', 'PSO210G6635' => 'pso', 'PSO210G7397' => 'pso', 'PSO210G7700' => 'pso', 'PSO455G0035' => 'pso', 'PSO455G0180' => 'pso', 'PSO478G4515' => 'pso', 'PSO832G1305' => 'pso', 'PSO832G3489' => 'pso', 'QL02p075247' => 'qlo', 'QL03p051148' => 'qlo', 'QL05p010313' => 'qlo', 'QL06p034627' => 'qlo', 'QL10p001889' => 'qlo', 'QL10p010846' => 'qlo', 'RcHm_v2.0_Chr1g0350621' => 'rch', 'RcHm_v2.0_Chr1g0350641' => 'rch', 'RcHm_v2.0_Chr2g0092891' => 'rch', 'RcHm_v2.0_Chr2g0100251' => 'rch', 'RcHm_v2.0_Chr2g0158661' => 'rch', 'RcHm_v2.0_Chr2g0172741' => 'rch', 'RcHm_v2.0_Chr4g0429571' => 'rch', 'RcHm_v2.0_Chr5g0042471' => 'rch', 'RcHm_v2.0_Chr7g0189451' => 'rch', 'Rhsim08G0052000' => 'rsi', 'Rhsim08G0174400' => 'rsi', 'Rhsim08G0193200' => 'rsi', 'Rhsim10G0214800' => 'rsi', 'Rhsim10G0214900' => 'rsi', 'Rhsim10G0215000' => 'rsi', 'Rhsim12G0022900' => 'rsi', 'Rhsim12G0177500' => 'rsi', 'Rhsim12G0177700' => 'rsi', 'Sabra03G0122600' => 'sbr', 'Sabra05G0097400' => 'sbr', 'Sabra12G0064100' => 'sbr', 'Sabra15G0121300' => 'sbr', 'SalBow2G0642' => 'sbo', 'SalBow5G2667' => 'sbo', 'SalBow5G4873' => 'sbo', 'SalBow8G2395' => 'sbo', 'Sc03g0003290' => 'sci', 'Sc10g0010130' => 'sci', 'Sc22g0003650' => 'sci', 'Sed0001603' => 'sed', 'Sed0004259' => 'sed', 'Sed0006789' => 'sed', 'Sed0011838' => 'sed', 'Sed0012964' => 'sed', 'Sed0016383' => 'sed', 'Sed0019010' => 'sed', 'Sed0020188' => 'sed', 'SEGI_04702' => 'sgi', 'SEGI_17231' => 'sgi', 'SEGI_18877' => 'sgi', 'SEGI_25196' => 'sgi', 'SEGI_25515' => 'sgi', 'SEGI_28445' => 'sgi', 'SEGI_37452' => 'sgi', 'SGA_v2.0_scaffold188G40336' => 'sas', 'SGA_v2.0_scaffold228G43247' => 'sas', 'SGA_v2.0_scaffold280G46853' => 'sas', 'SGA_v2.0_scaffold34G13808' => 'sas', 'SGA_v2.0_scaffold40G15576' => 'sas', 'SGA_v2.0_scaffold611G53188' => 'sas', 'SGA_v2.0_scaffold78G25461' => 'sas', 'SGA_v2.0_scaffold90G27888' => 'sas', 'SHI08601' => 'shi', 'SHI08606' => 'shi', 'SHI17117' => 'shi', 'SHI17119' => 'shi', 'SMO118G0201' => 'smo', 'SMO169G0247' => 'smo', 'SMO176G0006' => 'smo', 'SMO176G0015' => 'smo', 'SMO202G0006' => 'smo', 'SMO240G0050' => 'smo', 'SMO286G0009' => 'smo', 'SMO338G0033' => 'smo', 'SMO356G0533' => 'smo', 'SMO364G0382' => 'smo', 'SMO367G0166' => 'smo', 'SMO367G1098' => 'smo', 'Solyc01g009920.3' => 'sly', 'Solyc01g099300.3' => 'sly', 'Solyc02g084700.3' => 'sly', 'Solyc03g097520.3' => 'sly', 'Solyc06g071580.3' => 'sly', 'Solyc10g081760.3' => 'sly', 'Sopen01g005480' => 'spe', 'Sopen01g042850' => 'spe', 'Sopen02g029370' => 'spe', 'Sopen03g028280' => 'spe', 'Sopen06g027870' => 'spe', 'Sopen10g032270' => 'spe', 'Sp5g18180' => 'spa', 'Sp6g12880' => 'spa', 'Sp6g30850' => 'spa', 'Sp7g22960' => 'spa', 'Sp7g34010' => 'spa', 'SpUn1326_0010' => 'spa', 'TAR371G0242' => 'tar', 'TAR622G0638' => 'tar', 'TAR628G1548' => 'tar', 'TAR629G1079' => 'tar', 'TAR629G3413' => 'tar', 'THA.LOC104804249' => 'tha', 'THA.LOC104808315' => 'tha', 'THA.LOC104809238' => 'tha', 'THA.LOC104825484' => 'tha', 'Thecc.01G025500' => 'tca', 'Thecc.03G015800' => 'tca', 'Thecc.03G018000' => 'tca', 'Thecc.03G134800' => 'tca', 'Thecc.04G014700' => 'tca', 'Thhalv10006991m.g' => 'esa', 'Thhalv10012707m.g' => 'esa', 'Thhalv10015739m.g' => 'esa', 'Thhalv10024553m.g' => 'esa', 'Thhalv10024673m.g' => 'esa', 'Thhalv10029187m.g' => 'esa', 'TPR.G12971' => 'tpr', 'TPR.G29396' => 'tpr', 'TPR.G33376' => 'tpr', 'TPR.G35508' => 'tpr', 'TPR.G35516' => 'tpr', 'TPR.G37317' => 'tpr', 'TPR.G37389' => 'tpr', 'TPR.G37523' => 'tpr', 'TPR.G559' => 'tpr', 'TWI14G0070' => 'twi', 'TWI14G0729' => 'twi', 'TWI18G0596' => 'twi', 'TWI39G0780' => 'twi', 'TWI39G0850' => 'twi', 'TWI73G1052' => 'twi', 'unitig_52.g17485' => 'ugi', 'unitig_61.g26355' => 'ugi', 'vmacro01040' => 'vma', 'vmacro16731' => 'vma', 'vmacro18270' => 'vma', 'vmacro19142' => 'vma', 'vmacro19407' => 'vma', 'vmacro19408' => 'vma', 'vmacro21899' => 'vma', 'vmacro21900' => 'vma', 'vmacro21901' => 'vma', 'VMungo0251G0490' => 'vmu', 'VMungo0251G1748' => 'vmu', 'VMungo1309G0421' => 'vmu', 'Zm00001eb086500' => 'zma', 'Zm00001eb150680' => 'zma', 'Zm00001eb162330' => 'zma', 'Zm00001eb203130' => 'zma', 'Zm00001eb369480' => 'zma', 'Zm00001eb382340' => 'zma', 'Zm00001eb416360' => 'zma' ), 'gf_id' => 'HOM05D000902', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000902' ), 'data_identifier' => 'HOM05D000902', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000902', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '663', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02470' => 'bna', 'A01p16260' => 'bna', 'A02p01680' => 'bna', 'A03p16600' => 'bna', 'A03p55660' => 'bna', 'A03p64160' => 'bna', 'A03p64170' => 'bna', 'A08p31900' => 'bna', 'A09p59530' => 'bna', 'A10p08230' => 'bna', 'A10p25090' => 'bna', 'Aa31LG3G7100' => 'aar', 'Aa31LG3G7110' => 'aar', 'Aa31LG6G13160' => 'aar', 'Aa31LG7G10770' => 'aar', 'Aa31LG7G3830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2723' => 'aag', 'Actinidia08045' => 'ach', 'Actinidia08888' => 'ach', 'Actinidia18333' => 'ach', 'Actinidia19334' => 'ach', 'Actinidia25552' => 'ach', 'Actinidia26089' => 'ach', 'Actinidia30615' => 'ach', 'Actinidia30616' => 'ach', 'Actinidia33083' => 'ach', 'Actinidia35762' => 'ach', 'Ah.02g110620' => 'amhyb', 'Ah.11g046390' => 'amhyb', 'AL1G31670' => 'aly', 'AL6G23730' => 'aly', 'AL7G14740' => 'aly', 'AL7G14750' => 'aly', 'AL7G14760' => 'aly', 'AL7G28220' => 'aly', 'AL8G24940' => 'aly', 'Aqoxy3G01665' => 'aox', 'Aqoxy3G02853' => 'aox', 'Aqoxy5G01513' => 'aox', 'Aqoxy5G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8SKA4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ75LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKDA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0LJZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7REX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZP4YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWX7I5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2QKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS0L9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPCD8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q161UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC7XCF' => 'arhy', 'AT1G19100' => 'ath', 'AT4G24970' => 'ath', 'AT4G36270' => 'ath', 'AT4G36280' => 'ath', 'AT4G36290' => 'ath', 'AT5G13130' => 'ath', 'AT5G50780' => 'ath', 'ATR0582G266' => 'atr', 'ATR0661G195' => 'atr', 'ATR1152G031' => 'atr', 'Atru.chr11.2382' => 'acertr', 'Atru.chr12.2337' => 'acertr', 'Atru.chr3.744' => 'acertr', 'Atru.chr6.1870' => 'acertr', 'Atru.chr9.2515' => 'acertr', 'AUR62004120' => 'cqu', 'AUR62005667' => 'cqu', 'AUR62007634' => 'cqu', 'AUR62008186' => 'cqu', 'AUR62008187' => 'cqu', 'AUR62008188' => 'cqu', 'AUR62027954' => 'cqu', 'AUR62028766' => 'cqu', 'AUR62028767' => 'cqu', 'AUR62028768' => 'cqu', 'AUR62028886' => 'cqu', 'AUR62029563' => 'cqu', 'AUR62038832' => 'cqu', 'BcaB01g04149' => 'bca', 'BcaB03g12940' => 'bca', 'BcaB03g13090' => 'bca', 'BcaB03g14466' => 'bca', 'BcaB05g24035' => 'bca', 'BcaC01g06050' => 'bca', 'BcaC04g19148' => 'bca', 'BcaC04g20761' => 'bca', 'BcaC06g32845' => 'bca', 'BcaC07g41274' => 'bca', 'BcaC09g50827' => 'bca', 'BcaNung00741' => 'bca', 'BcaNung00742' => 'bca', 'BcaNung01859' => 'bca', 'BcaNung03985' => 'bca', 'BcaNung03989' => 'bca', 'BcaNung05661' => 'bca', 'BolC1t00257H' => 'bol', 'BolC1t01956H' => 'bol', 'BolC2t06534H' => 'bol', 'BolC3t14334H' => 'bol', 'BolC5t30451H' => 'bol', 'BolC7t45880H' => 'bol', 'BolC7t46586H' => 'bol', 'BolC8t49301H' => 'bol', 'BolC8t51837H' => 'bol', 'BolC9t56822H' => 'bol', 'BolC9t59235H' => 'bol', 'BraA01t00234Z' => 'bra', 'BraA01t01563Z' => 'bra', 'BraA02t05147Z' => 'bra', 'BraA03t10947Z' => 'bra', 'BraA03t14633Z' => 'bra', 'BraA08t35112Z' => 'bra', 'BraA09t41330Z' => 'bra', 'BraA10t44570Z' => 'bra', 'C01p02670' => 'bna', 'C01p20260' => 'bna', 'C02p05890' => 'bna', 'C03p19530' => 'bna', 'C05p17470' => 'bna', 'C07p53900' => 'bna', 'C07p61630' => 'bna', 'C08p16800' => 'bna', 'C08p42810' => 'bna', 'C09p39480' => 'bna', 'C09p63980' => 'bna', 'CAN.G1001.7' => 'can', 'CAN.G1034.55' => 'can', 'CAN.G143.7' => 'can', 'CAN.G3340.1' => 'can', 'CAN.G358.19' => 'can', 'CAN.G373.2' => 'can', 'CAN.G674.16' => 'can', 'CAN.G674.17' => 'can', 'CAN.G674.18' => 'can', 'CAN.G732.2' => 'can', 'CAN.G732.3' => 'can', 'CAN.G993.39' => 'can', 'CANSAT01G2052' => 'cansat', 'CANSAT80G0070' => 'cansat', 'CANSAT80G0483' => 'cansat', 'CANSAT80G0625' => 'cansat', 'CARHR019690' => 'chi', 'CARHR080280' => 'chi', 'CARHR152750' => 'chi', 'CARHR152760' => 'chi', 'CARHR152770' => 'chi', 'CARHR200340' => 'chi', 'CARHR232370' => 'chi', 'CARHR244670' => 'chi', 'CARHR244680' => 'chi', 'CARHR257520' => 'chi', 'Carub.0001s1872' => 'cru', 'Carub.0006s1130' => 'cru', 'Carub.0007s0396' => 'cru', 'Carub.0007s0397' => 'cru', 'Carub.0007s1608' => 'cru', 'Carub.0008s1068' => 'cru', 'Carub.0008s1077' => 'cru', 'Ca_16158_v3' => 'car', 'Ca_17571_v3' => 'car', 'Ca_21936_v3' => 'car', 'Ca_22350_v3' => 'car', 'CBR_g22445' => 'cbr', 'CBR_g26290' => 'cbr', 'Cc04_g09610' => 'ccan', 'Cc04_g12280' => 'ccan', 'Cc07_g10230' => 'ccan', 'CDE02G0093' => 'cde', 'CDE02G0701' => 'cde', 'CDE04G1050' => 'cde', 'CDE05G1833' => 'cde', 'CDE05G3058' => 'cde', 'CDE05G3380' => 'cde', 'CDE06G0536' => 'cde', 'Cfa006923' => 'cfa', 'Cfa009402' => 'cfa', 'Cfa018751' => 'cfa', 'Cfa019164' => 'cfa', 'Cfa022935' => 'cfa', 'Ciclev10019081m.g' => 'ccl', 'Ciclev10025076m.g' => 'ccl', 'Ciclev10030712m.g' => 'ccl', 'Ciclev10033760m.g' => 'ccl', 'CiPaw.05G105600' => 'cil', 'CiPaw.08G136700' => 'cil', 'CiPaw.11G003900' => 'cil', 'CiPaw.11G023700' => 'cil', 'CiPaw.12G003700' => 'cil', 'ClCG06G017100' => 'cla', 'ClCG06G018110' => 'cla', 'ClCG07G008800' => 'cla', 'ClCG07G015330' => 'cla', 'COL.COLO4_13698' => 'col', 'COL.COLO4_16659' => 'col', 'COL.COLO4_21986' => 'col', 'COL.COLO4_24049' => 'col', 'COL.COLO4_29061' => 'col', 'COL.COLO4_29075' => 'col', 'COL.COLO4_30094' => 'col', 'Cpa.g.c33689' => 'cpa', 'Cpa.g.sc108.39' => 'cpa', 'Cpa.g.sc108.41' => 'cpa', 'Cpa.g.sc1163.1' => 'cpa', 'Cpa.g.sc4.155' => 'cpa', 'Cpa.g.sc6.194' => 'cpa', 'CsaV3_1G000340' => 'csa', 'CsaV3_1G001400' => 'csa', 'CsaV3_4G002220' => 'csa', 'CsaV3_4G005370' => 'csa', 'CSS0007487' => 'camsi', 'CSS0008066' => 'camsi', 'CSS0009120' => 'camsi', 'CSS0015512' => 'camsi', 'CSS0022409' => 'camsi', 'CSS0025358' => 'camsi', 'CSS0044547' => 'camsi', 'DCAR_013057' => 'dca', 'DCAR_015058' => 'dca', 'DCAR_016027' => 'dca', 'DCAR_017327' => 'dca', 'DCAR_020743' => 'dca', 'DCAR_026157' => 'dca', 'DCAR_032339' => 'dca', 'DCAR_032340' => 'dca', 'Dinv11200' => 'din', 'Dinv11201' => 'din', 'Dinv20631' => 'din', 'Dinv23182' => 'din', 'Dinv33466' => 'din', 'Dinv33583' => 'din', 'Dinv38565' => 'din', 'Duzib068G0200' => 'dzi', 'Duzib147G0132' => 'dzi', 'Duzib147G0635' => 'dzi', 'Duzib205G1670' => 'dzi', 'Duzib251G0606' => 'dzi', 'ECA232G3336' => 'eca', 'ECA232G3763' => 'eca', 'ECA232G4845' => 'eca', 'ECA234G1607' => 'eca', 'ECA246G0932' => 'eca', 'ECA247G0781' => 'eca', 'ECA247G1932' => 'eca', 'ECA247G2079' => 'eca', 'ECA247G3338' => 'eca', 'ECA247G4115' => 'eca', 'EL10Ac3g06552' => 'bvu', 'EL10Ac5g10721' => 'bvu', 'EL10Ac5g10722' => 'bvu', 'EL10Ac5g10723' => 'bvu', 'EL10Ac5g11361' => 'bvu', 'EL10Ac6g13553' => 'bvu', 'EL10As8g23872' => 'bvu', 'Eucgr.B00250' => 'egr', 'Eucgr.B00251' => 'egr', 'Eucgr.B03533' => 'egr', 'Eucgr.I02381' => 'egr', 'Eucgr.K02700' => 'egr', 'FAN02G0174' => 'fan', 'FAN02G3146' => 'fan', 'FAN04G1672' => 'fan', 'FAN04G2273' => 'fan', 'FAN05G2791' => 'fan', 'FAN05G4035' => 'fan', 'FAN07G0834' => 'fan', 'FAN08G1198' => 'fan', 'FAN09G4182' => 'fan', 'FAN12G0496' => 'fan', 'FAN13G1027' => 'fan', 'FAN13G2951' => 'fan', 'FAN14G0705' => 'fan', 'FAN14G0720' => 'fan', 'FAN17G0201' => 'fan', 'FAN17G2665' => 'fan', 'FAN18G1456' => 'fan', 'FAN18G1525' => 'fan', 'FAN18G3500' => 'fan', 'FAN28G2670' => 'fan', 'FvH4_1g12391' => 'fve', 'FvH4_4g23220' => 'fve', 'FvH4_5g08810' => 'fve', 'FvH4_5g28960' => 'fve', 'FvH4_6g42820' => 'fve', 'FvH4_6g51110' => 'fve', 'Glyma.02G051802' => 'gma', 'Glyma.04G185300' => 'gma', 'Glyma.05G202900' => 'gma', 'Glyma.08G010300' => 'gma', 'Glyma.16G131900' => 'gma', 'Glyma.17G087900' => 'gma', 'Gohir.A07G048600' => 'ghi', 'Gohir.A11G179000' => 'ghi', 'Gohir.A12G140900' => 'ghi', 'Gohir.A12G140950' => 'ghi', 'Gohir.A12G191700' => 'ghi', 'Gohir.A13G086300' => 'ghi', 'Gohir.D07G052900' => 'ghi', 'Gohir.D11G186600' => 'ghi', 'Gohir.D12G145575' => 'ghi', 'Gohir.D12G145650' => 'ghi', 'Gohir.D12G145725' => 'ghi', 'Gohir.D12G194050' => 'ghi', 'Gohir.D13G091800' => 'ghi', 'Gorai.001G055900' => 'gra', 'Gorai.007G198400' => 'gra', 'Gorai.008G157000' => 'gra', 'Gorai.008G157100' => 'gra', 'Gorai.008G208700' => 'gra', 'Gorai.010G138700' => 'gra', 'GSVIVG01000977001' => 'vvi', 'GSVIVG01007708001' => 'vvi', 'GSVIVG01008587001' => 'vvi', 'GSVIVG01018849001' => 'vvi', 'GSVIVG01032432001' => 'vvi', 'HanXRQChr02g0034131' => 'han', 'HanXRQChr02g0035981' => 'han', 'HanXRQChr02g0035991' => 'han', 'HanXRQChr05g0155611' => 'han', 'HanXRQChr05g0155621' => 'han', 'HanXRQChr08g0236501' => 'han', 'HanXRQChr09g0261321' => 'han', 'HanXRQChr09g0272081' => 'han', 'HanXRQChr10g0310741' => 'han', 'HanXRQChr11g0325591' => 'han', 'HanXRQChr12g0385691' => 'han', 'HanXRQChr13g0387801' => 'han', 'HanXRQChr15g0463011' => 'han', 'Haze_03826' => 'cav', 'Haze_03827' => 'cav', 'Haze_07183' => 'cav', 'Haze_07537' => 'cav', 'Haze_07539' => 'cav', 'Haze_12461' => 'cav', 'Haze_16115' => 'cav', 'Haze_16808' => 'cav', 'Haze_18531' => 'cav', 'Hma1.2p1_0046F.1_g026700' => 'hma', 'Hma1.2p1_0046F.1_g026710' => 'hma', 'Hma1.2p1_0168F.1_g074340' => 'hma', 'Hma1.2p1_0266F.1_g107030' => 'hma', 'Hma1.2p1_0266F.1_g107060' => 'hma', 'Hma1.2p1_0275F.1_g110510' => 'hma', 'Hma1.2p1_0592F.1_g185490' => 'hma', 'Hma1.2p1_0592F.1_g185500' => 'hma', 'Hma1.2p1_0592F.1_g185510' => 'hma', 'Hma1.2p1_0592F.1_g185520' => 'hma', 'Hma1.2p1_0592F.1_g185530' => 'hma', 'Hma1.2p1_0818F.1_g223450' => 'hma', 'HPP92_009708' => 'vpl', 'HPP92_009793' => 'vpl', 'HPP92_009796' => 'vpl', 'HPP92_009797' => 'vpl', 'HPP92_014940' => 'vpl', 'HPP92_014988' => 'vpl', 'Hund02463' => 'sun', 'Hund02760' => 'sun', 'Hund05071' => 'sun', 'Hund10108' => 'sun', 'Hund11204' => 'sun', 'Hund14016' => 'sun', 'Hund16464' => 'sun', 'Lalb_Chr09g0333391' => 'lal', 'Lalb_Chr11g0070461' => 'lal', 'Lalb_Chr12g0201671' => 'lal', 'Lalb_Chr13g0297161' => 'lal', 'Lj1g0002823' => 'lja', 'Lj3C1074T6' => 'lonja', 'Lj4A212T28' => 'lonja', 'Lj4g0005516' => 'lja', 'Lj4g0013705' => 'lja', 'Lj4g0027865' => 'lja', 'Lj5C92G16' => 'lonja', 'Lj5C92T12' => 'lonja', 'Lj7C596T3' => 'lonja', 'Lj9A446G59' => 'lonja', 'Lj9A482G21' => 'lonja', 'Lsat_1_v5_gn_1_28261' => 'lsa', 'Lsat_1_v5_gn_1_28281' => 'lsa', 'Lsat_1_v5_gn_1_32721' => 'lsa', 'Lsat_1_v5_gn_4_151760' => 'lsa', 'Lsat_1_v5_gn_4_2120' => 'lsa', 'Lsat_1_v5_gn_4_75761' => 'lsa', 'Lsat_1_v5_gn_5_10920' => 'lsa', 'Manes.02G099900' => 'mes', 'Manes.11G096200' => 'mes', 'Manes.12G007200' => 'mes', 'Manes.14G048300' => 'mes', 'Manes.17G114700' => 'mes', 'Mapoly0002s0070' => 'mpo', 'Mapoly0029s0099' => 'mpo', 'MBI07_g24742_MAGBIO' => 'mbi', 'MBI10_g27988_MAGBIO' => 'mbi', 'MBI11_g13057_MAGBIO' => 'mbi', 'MD02G1137200' => 'mdo', 'MD06G1137200' => 'mdo', 'MD07G1122300' => 'mdo', 'MD09G1078200' => 'mdo', 'MD13G1123700' => 'mdo', 'MD14G1151900' => 'mdo', 'MD17G1030900' => 'mdo', 'MD17G1068200' => 'mdo', 'MD17G1068600' => 'mdo', 'Medtr3g077540' => 'mtr', 'Medtr4g105530' => 'mtr', 'Medtr8g076580' => 'mtr', 'Medtr8g076590' => 'mtr', 'Medtr8g096410' => 'mtr', 'MELO3C016411.2' => 'cme', 'MELO3C017780.2' => 'cme', 'MELO3C022560.2' => 'cme', 'MELO3C026187.2' => 'cme', 'MELO3C026286.2' => 'cme', 'MELO3C032854.2' => 'cme', 'Migut.H02495' => 'egut', 'Migut.I00561' => 'egut', 'Migut.K01015' => 'egut', 'Migut.K01016' => 'egut', 'Migut.L00743' => 'egut', 'Migut.L00744' => 'egut', 'Migut.L00746' => 'egut', 'Migut.L00798' => 'egut', 'Migut.L00799' => 'egut', 'Migut.N02096' => 'egut', 'MSTRG.11259' => 'ama', 'MSTRG.23142' => 'ama', 'MSTRG.2499' => 'ama', 'Nitab4.5_0000003g0730' => 'nta', 'Nitab4.5_0000137g0020' => 'nta', 'Nitab4.5_0000721g0210' => 'nta', 'Nitab4.5_0000723g0050' => 'nta', 'Nitab4.5_0000913g0070' => 'nta', 'Nitab4.5_0001332g0040' => 'nta', 'Nitab4.5_0001771g0050' => 'nta', 'Nitab4.5_0001918g0050' => 'nta', 'Nitab4.5_0002686g0030' => 'nta', 'Nitab4.5_0003156g0020' => 'nta', 'Nitab4.5_0003383g0040' => 'nta', 'Nitab4.5_0003918g0010' => 'nta', 'Nitab4.5_0006760g0010' => 'nta', 'Nn1g05981' => 'nnu', 'Nn1g06288' => 'nnu', 'Nn3g16371' => 'nnu', 'Nn3g16786' => 'nnu', 'Nn4g22232' => 'nnu', 'Oeu005144.1' => 'oeu', 'Oeu005145.1' => 'oeu', 'Oeu011348.1' => 'oeu', 'Oeu016415.1' => 'oeu', 'Oeu023501.1' => 'oeu', 'Oeu044473.1' => 'oeu', 'Oeu048892.2' => 'oeu', 'Os01g0549200' => 'osa', 'Os02g0469300' => 'osa', 'Os04g0311100' => 'osa', 'Os06g0474900' => 'osa', 'Os10g0181700' => 'osa', 'Os11g0454800' => 'osa', 'Peaxi162Scf00037g00714' => 'pax', 'Peaxi162Scf00084g01217' => 'pax', 'Peaxi162Scf00257g00217' => 'pax', 'Peaxi162Scf00516g00215' => 'pax', 'Peaxi162Scf00689g00123' => 'pax', 'PGR044G2719' => 'pgr', 'PGR083G1360' => 'pgr', 'PGR102G2849' => 'pgr', 'PGR119G2534' => 'pgr', 'PGSC0003DMG400003538' => 'stu', 'PGSC0003DMG400028138' => 'stu', 'PGSC0003DMG400031732' => 'stu', 'PGSC0003DMG400038165' => 'stu', 'Phvul.002G284600' => 'pvu', 'Phvul.003G258200' => 'pvu', 'Phvul.009G176500' => 'pvu', 'Potri.003G167201' => 'ptr', 'Potri.005G118400' => 'ptr', 'Potri.012G089000' => 'ptr', 'Potri.012G102800' => 'ptr', 'Potri.015G079400' => 'ptr', 'Potri.015G100900' => 'ptr', 'Pp3c14_9810' => 'ppa', 'Pp3c15_10450' => 'ppa', 'Pp3c20_19150' => 'ppa', 'Pp3c23_12740' => 'ppa', 'Pp3c23_6310' => 'ppa', 'Pp3c24_3720' => 'ppa', 'Pp3c27_2580' => 'ppa', 'Pp3c9_8990' => 'ppa', 'PRCOL_00002854' => 'pco', 'Prupe.1G221200' => 'ppe', 'Prupe.3G289000' => 'ppe', 'Prupe.5G147000' => 'ppe', 'Prupe.6G157300' => 'ppe', 'Prupe.7G163400' => 'ppe', 'Psat0s2177g0040' => 'psa', 'Psat3g174760' => 'psa', 'Psat3g192160' => 'psa', 'Psat4g058520' => 'psa', 'Psat4g096840' => 'psa', 'Psat7g037320' => 'psa', 'PSO017G1274' => 'pso', 'PSO017G5166' => 'pso', 'PSO063G4558' => 'pso', 'PSO170G4458' => 'pso', 'PSO170G5005' => 'pso', 'PSO210G6156' => 'pso', 'PSO210G6635' => 'pso', 'PSO210G7397' => 'pso', 'PSO210G7700' => 'pso', 'PSO455G0035' => 'pso', 'PSO455G0180' => 'pso', 'PSO478G4515' => 'pso', 'PSO832G1305' => 'pso', 'PSO832G3489' => 'pso', 'QL02p075247' => 'qlo', 'QL03p051148' => 'qlo', 'QL05p010313' => 'qlo', 'QL06p034627' => 'qlo', 'QL10p001889' => 'qlo', 'QL10p010846' => 'qlo', 'RcHm_v2.0_Chr1g0350621' => 'rch', 'RcHm_v2.0_Chr1g0350641' => 'rch', 'RcHm_v2.0_Chr2g0092891' => 'rch', 'RcHm_v2.0_Chr2g0100251' => 'rch', 'RcHm_v2.0_Chr2g0158661' => 'rch', 'RcHm_v2.0_Chr2g0172741' => 'rch', 'RcHm_v2.0_Chr4g0429571' => 'rch', 'RcHm_v2.0_Chr5g0042471' => 'rch', 'RcHm_v2.0_Chr7g0189451' => 'rch', 'Rhsim08G0052000' => 'rsi', 'Rhsim08G0174400' => 'rsi', 'Rhsim08G0193200' => 'rsi', 'Rhsim10G0214800' => 'rsi', 'Rhsim10G0214900' => 'rsi', 'Rhsim10G0215000' => 'rsi', 'Rhsim12G0022900' => 'rsi', 'Rhsim12G0177500' => 'rsi', 'Rhsim12G0177700' => 'rsi', 'Sabra03G0122600' => 'sbr', 'Sabra05G0097400' => 'sbr', 'Sabra12G0064100' => 'sbr', 'Sabra15G0121300' => 'sbr', 'SalBow2G0642' => 'sbo', 'SalBow5G2667' => 'sbo', 'SalBow5G4873' => 'sbo', 'SalBow8G2395' => 'sbo', 'Sc03g0003290' => 'sci', 'Sc10g0010130' => 'sci', 'Sc22g0003650' => 'sci', 'Sed0001603' => 'sed', 'Sed0004259' => 'sed', 'Sed0006789' => 'sed', 'Sed0011838' => 'sed', 'Sed0012964' => 'sed', 'Sed0016383' => 'sed', 'Sed0019010' => 'sed', 'Sed0020188' => 'sed', 'SEGI_04702' => 'sgi', 'SEGI_17231' => 'sgi', 'SEGI_18877' => 'sgi', 'SEGI_25196' => 'sgi', 'SEGI_25515' => 'sgi', 'SEGI_28445' => 'sgi', 'SEGI_37452' => 'sgi', 'SGA_v2.0_scaffold188G40336' => 'sas', 'SGA_v2.0_scaffold228G43247' => 'sas', 'SGA_v2.0_scaffold280G46853' => 'sas', 'SGA_v2.0_scaffold34G13808' => 'sas', 'SGA_v2.0_scaffold40G15576' => 'sas', 'SGA_v2.0_scaffold611G53188' => 'sas', 'SGA_v2.0_scaffold78G25461' => 'sas', 'SGA_v2.0_scaffold90G27888' => 'sas', 'SHI08601' => 'shi', 'SHI08606' => 'shi', 'SHI17117' => 'shi', 'SHI17119' => 'shi', 'SMO118G0201' => 'smo', 'SMO169G0247' => 'smo', 'SMO176G0006' => 'smo', 'SMO176G0015' => 'smo', 'SMO202G0006' => 'smo', 'SMO240G0050' => 'smo', 'SMO286G0009' => 'smo', 'SMO338G0033' => 'smo', 'SMO356G0533' => 'smo', 'SMO364G0382' => 'smo', 'SMO367G0166' => 'smo', 'SMO367G1098' => 'smo', 'Solyc01g009920.3' => 'sly', 'Solyc01g099300.3' => 'sly', 'Solyc02g084700.3' => 'sly', 'Solyc03g097520.3' => 'sly', 'Solyc06g071580.3' => 'sly', 'Solyc10g081760.3' => 'sly', 'Sopen01g005480' => 'spe', 'Sopen01g042850' => 'spe', 'Sopen02g029370' => 'spe', 'Sopen03g028280' => 'spe', 'Sopen06g027870' => 'spe', 'Sopen10g032270' => 'spe', 'Sp5g18180' => 'spa', 'Sp6g12880' => 'spa', 'Sp6g30850' => 'spa', 'Sp7g22960' => 'spa', 'Sp7g34010' => 'spa', 'SpUn1326_0010' => 'spa', 'TAR371G0242' => 'tar', 'TAR622G0638' => 'tar', 'TAR628G1548' => 'tar', 'TAR629G1079' => 'tar', 'TAR629G3413' => 'tar', 'THA.LOC104804249' => 'tha', 'THA.LOC104808315' => 'tha', 'THA.LOC104809238' => 'tha', 'THA.LOC104825484' => 'tha', 'Thecc.01G025500' => 'tca', 'Thecc.03G015800' => 'tca', 'Thecc.03G018000' => 'tca', 'Thecc.03G134800' => 'tca', 'Thecc.04G014700' => 'tca', 'Thhalv10006991m.g' => 'esa', 'Thhalv10012707m.g' => 'esa', 'Thhalv10015739m.g' => 'esa', 'Thhalv10024553m.g' => 'esa', 'Thhalv10024673m.g' => 'esa', 'Thhalv10029187m.g' => 'esa', 'TPR.G12971' => 'tpr', 'TPR.G29396' => 'tpr', 'TPR.G33376' => 'tpr', 'TPR.G35508' => 'tpr', 'TPR.G35516' => 'tpr', 'TPR.G37317' => 'tpr', 'TPR.G37389' => 'tpr', 'TPR.G37523' => 'tpr', 'TPR.G559' => 'tpr', 'TWI14G0070' => 'twi', 'TWI14G0729' => 'twi', 'TWI18G0596' => 'twi', 'TWI39G0780' => 'twi', 'TWI39G0850' => 'twi', 'TWI73G1052' => 'twi', 'unitig_52.g17485' => 'ugi', 'unitig_61.g26355' => 'ugi', 'vmacro01040' => 'vma', 'vmacro16731' => 'vma', 'vmacro18270' => 'vma', 'vmacro19142' => 'vma', 'vmacro19407' => 'vma', 'vmacro19408' => 'vma', 'vmacro21899' => 'vma', 'vmacro21900' => 'vma', 'vmacro21901' => 'vma', 'VMungo0251G0490' => 'vmu', 'VMungo0251G1748' => 'vmu', 'VMungo1309G0421' => 'vmu', 'Zm00001eb086500' => 'zma', 'Zm00001eb150680' => 'zma', 'Zm00001eb162330' => 'zma', 'Zm00001eb203130' => 'zma', 'Zm00001eb369480' => 'zma', 'Zm00001eb382340' => 'zma', 'Zm00001eb416360' => 'zma' ) $gf_id = 'HOM05D000902' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000902' ) $data_identifier = 'HOM05D000902' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 13, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 10, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 6, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 9, 'hma' => (int) 12, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 4, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 6, 'ppa' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 6, 'rch' => (int) 9, 'rsi' => (int) 9, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 12, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 3, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416360' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000902', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '663', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02470' => 'bna', 'A01p16260' => 'bna', 'A02p01680' => 'bna', 'A03p16600' => 'bna', 'A03p55660' => 'bna', 'A03p64160' => 'bna', 'A03p64170' => 'bna', 'A08p31900' => 'bna', 'A09p59530' => 'bna', 'A10p08230' => 'bna', 'A10p25090' => 'bna', 'Aa31LG3G7100' => 'aar', 'Aa31LG3G7110' => 'aar', 'Aa31LG6G13160' => 'aar', 'Aa31LG7G10770' => 'aar', 'Aa31LG7G3830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2723' => 'aag', 'Actinidia08045' => 'ach', 'Actinidia08888' => 'ach', 'Actinidia18333' => 'ach', 'Actinidia19334' => 'ach', 'Actinidia25552' => 'ach', 'Actinidia26089' => 'ach', 'Actinidia30615' => 'ach', 'Actinidia30616' => 'ach', 'Actinidia33083' => 'ach', 'Actinidia35762' => 'ach', 'Ah.02g110620' => 'amhyb', 'Ah.11g046390' => 'amhyb', 'AL1G31670' => 'aly', 'AL6G23730' => 'aly', 'AL7G14740' => 'aly', 'AL7G14750' => 'aly', 'AL7G14760' => 'aly', 'AL7G28220' => 'aly', 'AL8G24940' => 'aly', 'Aqoxy3G01665' => 'aox', 'Aqoxy3G02853' => 'aox', 'Aqoxy5G01513' => 'aox', 'Aqoxy5G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8SKA4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ75LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKDA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0LJZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7REX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZP4YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWX7I5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2QKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS0L9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPCD8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q161UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC7XCF' => 'arhy', 'AT1G19100' => 'ath', 'AT4G24970' => 'ath', 'AT4G36270' => 'ath', 'AT4G36280' => 'ath', 'AT4G36290' => 'ath', 'AT5G13130' => 'ath', 'AT5G50780' => 'ath', 'ATR0582G266' => 'atr', 'ATR0661G195' => 'atr', 'ATR1152G031' => 'atr', 'Atru.chr11.2382' => 'acertr', 'Atru.chr12.2337' => 'acertr', 'Atru.chr3.744' => 'acertr', 'Atru.chr6.1870' => 'acertr', 'Atru.chr9.2515' => 'acertr', 'AUR62004120' => 'cqu', 'AUR62005667' => 'cqu', 'AUR62007634' => 'cqu', 'AUR62008186' => 'cqu', 'AUR62008187' => 'cqu', 'AUR62008188' => 'cqu', 'AUR62027954' => 'cqu', 'AUR62028766' => 'cqu', 'AUR62028767' => 'cqu', 'AUR62028768' => 'cqu', 'AUR62028886' => 'cqu', 'AUR62029563' => 'cqu', 'AUR62038832' => 'cqu', 'BcaB01g04149' => 'bca', 'BcaB03g12940' => 'bca', 'BcaB03g13090' => 'bca', 'BcaB03g14466' => 'bca', 'BcaB05g24035' => 'bca', 'BcaC01g06050' => 'bca', 'BcaC04g19148' => 'bca', 'BcaC04g20761' => 'bca', 'BcaC06g32845' => 'bca', 'BcaC07g41274' => 'bca', 'BcaC09g50827' => 'bca', 'BcaNung00741' => 'bca', 'BcaNung00742' => 'bca', 'BcaNung01859' => 'bca', 'BcaNung03985' => 'bca', 'BcaNung03989' => 'bca', 'BcaNung05661' => 'bca', 'BolC1t00257H' => 'bol', 'BolC1t01956H' => 'bol', 'BolC2t06534H' => 'bol', 'BolC3t14334H' => 'bol', 'BolC5t30451H' => 'bol', 'BolC7t45880H' => 'bol', 'BolC7t46586H' => 'bol', 'BolC8t49301H' => 'bol', 'BolC8t51837H' => 'bol', 'BolC9t56822H' => 'bol', 'BolC9t59235H' => 'bol', 'BraA01t00234Z' => 'bra', 'BraA01t01563Z' => 'bra', 'BraA02t05147Z' => 'bra', 'BraA03t10947Z' => 'bra', 'BraA03t14633Z' => 'bra', 'BraA08t35112Z' => 'bra', 'BraA09t41330Z' => 'bra', 'BraA10t44570Z' => 'bra', 'C01p02670' => 'bna', 'C01p20260' => 'bna', 'C02p05890' => 'bna', 'C03p19530' => 'bna', 'C05p17470' => 'bna', 'C07p53900' => 'bna', 'C07p61630' => 'bna', 'C08p16800' => 'bna', 'C08p42810' => 'bna', 'C09p39480' => 'bna', 'C09p63980' => 'bna', 'CAN.G1001.7' => 'can', 'CAN.G1034.55' => 'can', 'CAN.G143.7' => 'can', 'CAN.G3340.1' => 'can', 'CAN.G358.19' => 'can', 'CAN.G373.2' => 'can', 'CAN.G674.16' => 'can', 'CAN.G674.17' => 'can', 'CAN.G674.18' => 'can', 'CAN.G732.2' => 'can', 'CAN.G732.3' => 'can', 'CAN.G993.39' => 'can', 'CANSAT01G2052' => 'cansat', 'CANSAT80G0070' => 'cansat', 'CANSAT80G0483' => 'cansat', 'CANSAT80G0625' => 'cansat', 'CARHR019690' => 'chi', 'CARHR080280' => 'chi', 'CARHR152750' => 'chi', 'CARHR152760' => 'chi', 'CARHR152770' => 'chi', 'CARHR200340' => 'chi', 'CARHR232370' => 'chi', 'CARHR244670' => 'chi', 'CARHR244680' => 'chi', 'CARHR257520' => 'chi', 'Carub.0001s1872' => 'cru', 'Carub.0006s1130' => 'cru', 'Carub.0007s0396' => 'cru', 'Carub.0007s0397' => 'cru', 'Carub.0007s1608' => 'cru', 'Carub.0008s1068' => 'cru', 'Carub.0008s1077' => 'cru', 'Ca_16158_v3' => 'car', 'Ca_17571_v3' => 'car', 'Ca_21936_v3' => 'car', 'Ca_22350_v3' => 'car', 'CBR_g22445' => 'cbr', 'CBR_g26290' => 'cbr', 'Cc04_g09610' => 'ccan', 'Cc04_g12280' => 'ccan', 'Cc07_g10230' => 'ccan', 'CDE02G0093' => 'cde', 'CDE02G0701' => 'cde', 'CDE04G1050' => 'cde', 'CDE05G1833' => 'cde', 'CDE05G3058' => 'cde', 'CDE05G3380' => 'cde', 'CDE06G0536' => 'cde', 'Cfa006923' => 'cfa', 'Cfa009402' => 'cfa', 'Cfa018751' => 'cfa', 'Cfa019164' => 'cfa', 'Cfa022935' => 'cfa', 'Ciclev10019081m.g' => 'ccl', 'Ciclev10025076m.g' => 'ccl', 'Ciclev10030712m.g' => 'ccl', 'Ciclev10033760m.g' => 'ccl', 'CiPaw.05G105600' => 'cil', 'CiPaw.08G136700' => 'cil', 'CiPaw.11G003900' => 'cil', 'CiPaw.11G023700' => 'cil', 'CiPaw.12G003700' => 'cil', 'ClCG06G017100' => 'cla', 'ClCG06G018110' => 'cla', 'ClCG07G008800' => 'cla', 'ClCG07G015330' => 'cla', 'COL.COLO4_13698' => 'col', 'COL.COLO4_16659' => 'col', 'COL.COLO4_21986' => 'col', 'COL.COLO4_24049' => 'col', 'COL.COLO4_29061' => 'col', 'COL.COLO4_29075' => 'col', 'COL.COLO4_30094' => 'col', 'Cpa.g.c33689' => 'cpa', 'Cpa.g.sc108.39' => 'cpa', 'Cpa.g.sc108.41' => 'cpa', 'Cpa.g.sc1163.1' => 'cpa', 'Cpa.g.sc4.155' => 'cpa', 'Cpa.g.sc6.194' => 'cpa', 'CsaV3_1G000340' => 'csa', 'CsaV3_1G001400' => 'csa', 'CsaV3_4G002220' => 'csa', 'CsaV3_4G005370' => 'csa', 'CSS0007487' => 'camsi', 'CSS0008066' => 'camsi', 'CSS0009120' => 'camsi', 'CSS0015512' => 'camsi', 'CSS0022409' => 'camsi', 'CSS0025358' => 'camsi', 'CSS0044547' => 'camsi', 'DCAR_013057' => 'dca', 'DCAR_015058' => 'dca', 'DCAR_016027' => 'dca', 'DCAR_017327' => 'dca', 'DCAR_020743' => 'dca', 'DCAR_026157' => 'dca', 'DCAR_032339' => 'dca', 'DCAR_032340' => 'dca', 'Dinv11200' => 'din', 'Dinv11201' => 'din', 'Dinv20631' => 'din', 'Dinv23182' => 'din', 'Dinv33466' => 'din', 'Dinv33583' => 'din', 'Dinv38565' => 'din', 'Duzib068G0200' => 'dzi', 'Duzib147G0132' => 'dzi', 'Duzib147G0635' => 'dzi', 'Duzib205G1670' => 'dzi', 'Duzib251G0606' => 'dzi', 'ECA232G3336' => 'eca', 'ECA232G3763' => 'eca', 'ECA232G4845' => 'eca', 'ECA234G1607' => 'eca', 'ECA246G0932' => 'eca', 'ECA247G0781' => 'eca', 'ECA247G1932' => 'eca', 'ECA247G2079' => 'eca', 'ECA247G3338' => 'eca', 'ECA247G4115' => 'eca', 'EL10Ac3g06552' => 'bvu', 'EL10Ac5g10721' => 'bvu', 'EL10Ac5g10722' => 'bvu', 'EL10Ac5g10723' => 'bvu', 'EL10Ac5g11361' => 'bvu', 'EL10Ac6g13553' => 'bvu', 'EL10As8g23872' => 'bvu', 'Eucgr.B00250' => 'egr', 'Eucgr.B00251' => 'egr', 'Eucgr.B03533' => 'egr', 'Eucgr.I02381' => 'egr', 'Eucgr.K02700' => 'egr', 'FAN02G0174' => 'fan', 'FAN02G3146' => 'fan', 'FAN04G1672' => 'fan', 'FAN04G2273' => 'fan', 'FAN05G2791' => 'fan', 'FAN05G4035' => 'fan', 'FAN07G0834' => 'fan', 'FAN08G1198' => 'fan', 'FAN09G4182' => 'fan', 'FAN12G0496' => 'fan', 'FAN13G1027' => 'fan', 'FAN13G2951' => 'fan', 'FAN14G0705' => 'fan', 'FAN14G0720' => 'fan', 'FAN17G0201' => 'fan', 'FAN17G2665' => 'fan', 'FAN18G1456' => 'fan', 'FAN18G1525' => 'fan', 'FAN18G3500' => 'fan', 'FAN28G2670' => 'fan', 'FvH4_1g12391' => 'fve', 'FvH4_4g23220' => 'fve', 'FvH4_5g08810' => 'fve', 'FvH4_5g28960' => 'fve', 'FvH4_6g42820' => 'fve', 'FvH4_6g51110' => 'fve', 'Glyma.02G051802' => 'gma', 'Glyma.04G185300' => 'gma', 'Glyma.05G202900' => 'gma', 'Glyma.08G010300' => 'gma', 'Glyma.16G131900' => 'gma', 'Glyma.17G087900' => 'gma', 'Gohir.A07G048600' => 'ghi', 'Gohir.A11G179000' => 'ghi', 'Gohir.A12G140900' => 'ghi', 'Gohir.A12G140950' => 'ghi', 'Gohir.A12G191700' => 'ghi', 'Gohir.A13G086300' => 'ghi', 'Gohir.D07G052900' => 'ghi', 'Gohir.D11G186600' => 'ghi', 'Gohir.D12G145575' => 'ghi', 'Gohir.D12G145650' => 'ghi', 'Gohir.D12G145725' => 'ghi', 'Gohir.D12G194050' => 'ghi', 'Gohir.D13G091800' => 'ghi', 'Gorai.001G055900' => 'gra', 'Gorai.007G198400' => 'gra', 'Gorai.008G157000' => 'gra', 'Gorai.008G157100' => 'gra', 'Gorai.008G208700' => 'gra', 'Gorai.010G138700' => 'gra', 'GSVIVG01000977001' => 'vvi', 'GSVIVG01007708001' => 'vvi', 'GSVIVG01008587001' => 'vvi', 'GSVIVG01018849001' => 'vvi', 'GSVIVG01032432001' => 'vvi', 'HanXRQChr02g0034131' => 'han', 'HanXRQChr02g0035981' => 'han', 'HanXRQChr02g0035991' => 'han', 'HanXRQChr05g0155611' => 'han', 'HanXRQChr05g0155621' => 'han', 'HanXRQChr08g0236501' => 'han', 'HanXRQChr09g0261321' => 'han', 'HanXRQChr09g0272081' => 'han', 'HanXRQChr10g0310741' => 'han', 'HanXRQChr11g0325591' => 'han', 'HanXRQChr12g0385691' => 'han', 'HanXRQChr13g0387801' => 'han', 'HanXRQChr15g0463011' => 'han', 'Haze_03826' => 'cav', 'Haze_03827' => 'cav', 'Haze_07183' => 'cav', 'Haze_07537' => 'cav', 'Haze_07539' => 'cav', 'Haze_12461' => 'cav', 'Haze_16115' => 'cav', 'Haze_16808' => 'cav', 'Haze_18531' => 'cav', 'Hma1.2p1_0046F.1_g026700' => 'hma', 'Hma1.2p1_0046F.1_g026710' => 'hma', 'Hma1.2p1_0168F.1_g074340' => 'hma', 'Hma1.2p1_0266F.1_g107030' => 'hma', 'Hma1.2p1_0266F.1_g107060' => 'hma', 'Hma1.2p1_0275F.1_g110510' => 'hma', 'Hma1.2p1_0592F.1_g185490' => 'hma', 'Hma1.2p1_0592F.1_g185500' => 'hma', 'Hma1.2p1_0592F.1_g185510' => 'hma', 'Hma1.2p1_0592F.1_g185520' => 'hma', 'Hma1.2p1_0592F.1_g185530' => 'hma', 'Hma1.2p1_0818F.1_g223450' => 'hma', 'HPP92_009708' => 'vpl', 'HPP92_009793' => 'vpl', 'HPP92_009796' => 'vpl', 'HPP92_009797' => 'vpl', 'HPP92_014940' => 'vpl', 'HPP92_014988' => 'vpl', 'Hund02463' => 'sun', 'Hund02760' => 'sun', 'Hund05071' => 'sun', 'Hund10108' => 'sun', 'Hund11204' => 'sun', 'Hund14016' => 'sun', 'Hund16464' => 'sun', 'Lalb_Chr09g0333391' => 'lal', 'Lalb_Chr11g0070461' => 'lal', 'Lalb_Chr12g0201671' => 'lal', 'Lalb_Chr13g0297161' => 'lal', 'Lj1g0002823' => 'lja', 'Lj3C1074T6' => 'lonja', 'Lj4A212T28' => 'lonja', 'Lj4g0005516' => 'lja', 'Lj4g0013705' => 'lja', 'Lj4g0027865' => 'lja', 'Lj5C92G16' => 'lonja', 'Lj5C92T12' => 'lonja', 'Lj7C596T3' => 'lonja', 'Lj9A446G59' => 'lonja', 'Lj9A482G21' => 'lonja', 'Lsat_1_v5_gn_1_28261' => 'lsa', 'Lsat_1_v5_gn_1_28281' => 'lsa', 'Lsat_1_v5_gn_1_32721' => 'lsa', 'Lsat_1_v5_gn_4_151760' => 'lsa', 'Lsat_1_v5_gn_4_2120' => 'lsa', 'Lsat_1_v5_gn_4_75761' => 'lsa', 'Lsat_1_v5_gn_5_10920' => 'lsa', 'Manes.02G099900' => 'mes', 'Manes.11G096200' => 'mes', 'Manes.12G007200' => 'mes', 'Manes.14G048300' => 'mes', 'Manes.17G114700' => 'mes', 'Mapoly0002s0070' => 'mpo', 'Mapoly0029s0099' => 'mpo', 'MBI07_g24742_MAGBIO' => 'mbi', 'MBI10_g27988_MAGBIO' => 'mbi', 'MBI11_g13057_MAGBIO' => 'mbi', 'MD02G1137200' => 'mdo', 'MD06G1137200' => 'mdo', 'MD07G1122300' => 'mdo', 'MD09G1078200' => 'mdo', 'MD13G1123700' => 'mdo', 'MD14G1151900' => 'mdo', 'MD17G1030900' => 'mdo', 'MD17G1068200' => 'mdo', 'MD17G1068600' => 'mdo', 'Medtr3g077540' => 'mtr', 'Medtr4g105530' => 'mtr', 'Medtr8g076580' => 'mtr', 'Medtr8g076590' => 'mtr', 'Medtr8g096410' => 'mtr', 'MELO3C016411.2' => 'cme', 'MELO3C017780.2' => 'cme', 'MELO3C022560.2' => 'cme', 'MELO3C026187.2' => 'cme', 'MELO3C026286.2' => 'cme', 'MELO3C032854.2' => 'cme', 'Migut.H02495' => 'egut', 'Migut.I00561' => 'egut', 'Migut.K01015' => 'egut', 'Migut.K01016' => 'egut', 'Migut.L00743' => 'egut', 'Migut.L00744' => 'egut', 'Migut.L00746' => 'egut', 'Migut.L00798' => 'egut', 'Migut.L00799' => 'egut', 'Migut.N02096' => 'egut', 'MSTRG.11259' => 'ama', 'MSTRG.23142' => 'ama', 'MSTRG.2499' => 'ama', 'Nitab4.5_0000003g0730' => 'nta', 'Nitab4.5_0000137g0020' => 'nta', 'Nitab4.5_0000721g0210' => 'nta', 'Nitab4.5_0000723g0050' => 'nta', 'Nitab4.5_0000913g0070' => 'nta', 'Nitab4.5_0001332g0040' => 'nta', 'Nitab4.5_0001771g0050' => 'nta', 'Nitab4.5_0001918g0050' => 'nta', 'Nitab4.5_0002686g0030' => 'nta', 'Nitab4.5_0003156g0020' => 'nta', 'Nitab4.5_0003383g0040' => 'nta', 'Nitab4.5_0003918g0010' => 'nta', 'Nitab4.5_0006760g0010' => 'nta', 'Nn1g05981' => 'nnu', 'Nn1g06288' => 'nnu', 'Nn3g16371' => 'nnu', 'Nn3g16786' => 'nnu', 'Nn4g22232' => 'nnu', 'Oeu005144.1' => 'oeu', 'Oeu005145.1' => 'oeu', 'Oeu011348.1' => 'oeu', 'Oeu016415.1' => 'oeu', 'Oeu023501.1' => 'oeu', 'Oeu044473.1' => 'oeu', 'Oeu048892.2' => 'oeu', 'Os01g0549200' => 'osa', 'Os02g0469300' => 'osa', 'Os04g0311100' => 'osa', 'Os06g0474900' => 'osa', 'Os10g0181700' => 'osa', 'Os11g0454800' => 'osa', 'Peaxi162Scf00037g00714' => 'pax', 'Peaxi162Scf00084g01217' => 'pax', 'Peaxi162Scf00257g00217' => 'pax', 'Peaxi162Scf00516g00215' => 'pax', 'Peaxi162Scf00689g00123' => 'pax', 'PGR044G2719' => 'pgr', 'PGR083G1360' => 'pgr', 'PGR102G2849' => 'pgr', 'PGR119G2534' => 'pgr', 'PGSC0003DMG400003538' => 'stu', 'PGSC0003DMG400028138' => 'stu', 'PGSC0003DMG400031732' => 'stu', 'PGSC0003DMG400038165' => 'stu', 'Phvul.002G284600' => 'pvu', 'Phvul.003G258200' => 'pvu', 'Phvul.009G176500' => 'pvu', 'Potri.003G167201' => 'ptr', 'Potri.005G118400' => 'ptr', 'Potri.012G089000' => 'ptr', 'Potri.012G102800' => 'ptr', 'Potri.015G079400' => 'ptr', 'Potri.015G100900' => 'ptr', 'Pp3c14_9810' => 'ppa', 'Pp3c15_10450' => 'ppa', 'Pp3c20_19150' => 'ppa', 'Pp3c23_12740' => 'ppa', 'Pp3c23_6310' => 'ppa', 'Pp3c24_3720' => 'ppa', 'Pp3c27_2580' => 'ppa', 'Pp3c9_8990' => 'ppa', 'PRCOL_00002854' => 'pco', 'Prupe.1G221200' => 'ppe', 'Prupe.3G289000' => 'ppe', 'Prupe.5G147000' => 'ppe', 'Prupe.6G157300' => 'ppe', 'Prupe.7G163400' => 'ppe', 'Psat0s2177g0040' => 'psa', 'Psat3g174760' => 'psa', 'Psat3g192160' => 'psa', 'Psat4g058520' => 'psa', 'Psat4g096840' => 'psa', 'Psat7g037320' => 'psa', 'PSO017G1274' => 'pso', 'PSO017G5166' => 'pso', 'PSO063G4558' => 'pso', 'PSO170G4458' => 'pso', 'PSO170G5005' => 'pso', 'PSO210G6156' => 'pso', 'PSO210G6635' => 'pso', 'PSO210G7397' => 'pso', 'PSO210G7700' => 'pso', 'PSO455G0035' => 'pso', 'PSO455G0180' => 'pso', 'PSO478G4515' => 'pso', 'PSO832G1305' => 'pso', 'PSO832G3489' => 'pso', 'QL02p075247' => 'qlo', 'QL03p051148' => 'qlo', 'QL05p010313' => 'qlo', 'QL06p034627' => 'qlo', 'QL10p001889' => 'qlo', 'QL10p010846' => 'qlo', 'RcHm_v2.0_Chr1g0350621' => 'rch', 'RcHm_v2.0_Chr1g0350641' => 'rch', 'RcHm_v2.0_Chr2g0092891' => 'rch', 'RcHm_v2.0_Chr2g0100251' => 'rch', 'RcHm_v2.0_Chr2g0158661' => 'rch', 'RcHm_v2.0_Chr2g0172741' => 'rch', 'RcHm_v2.0_Chr4g0429571' => 'rch', 'RcHm_v2.0_Chr5g0042471' => 'rch', 'RcHm_v2.0_Chr7g0189451' => 'rch', 'Rhsim08G0052000' => 'rsi', 'Rhsim08G0174400' => 'rsi', 'Rhsim08G0193200' => 'rsi', 'Rhsim10G0214800' => 'rsi', 'Rhsim10G0214900' => 'rsi', 'Rhsim10G0215000' => 'rsi', 'Rhsim12G0022900' => 'rsi', 'Rhsim12G0177500' => 'rsi', 'Rhsim12G0177700' => 'rsi', 'Sabra03G0122600' => 'sbr', 'Sabra05G0097400' => 'sbr', 'Sabra12G0064100' => 'sbr', 'Sabra15G0121300' => 'sbr', 'SalBow2G0642' => 'sbo', 'SalBow5G2667' => 'sbo', 'SalBow5G4873' => 'sbo', 'SalBow8G2395' => 'sbo', 'Sc03g0003290' => 'sci', 'Sc10g0010130' => 'sci', 'Sc22g0003650' => 'sci', 'Sed0001603' => 'sed', 'Sed0004259' => 'sed', 'Sed0006789' => 'sed', 'Sed0011838' => 'sed', 'Sed0012964' => 'sed', 'Sed0016383' => 'sed', 'Sed0019010' => 'sed', 'Sed0020188' => 'sed', 'SEGI_04702' => 'sgi', 'SEGI_17231' => 'sgi', 'SEGI_18877' => 'sgi', 'SEGI_25196' => 'sgi', 'SEGI_25515' => 'sgi', 'SEGI_28445' => 'sgi', 'SEGI_37452' => 'sgi', 'SGA_v2.0_scaffold188G40336' => 'sas', 'SGA_v2.0_scaffold228G43247' => 'sas', 'SGA_v2.0_scaffold280G46853' => 'sas', 'SGA_v2.0_scaffold34G13808' => 'sas', 'SGA_v2.0_scaffold40G15576' => 'sas', 'SGA_v2.0_scaffold611G53188' => 'sas', 'SGA_v2.0_scaffold78G25461' => 'sas', 'SGA_v2.0_scaffold90G27888' => 'sas', 'SHI08601' => 'shi', 'SHI08606' => 'shi', 'SHI17117' => 'shi', 'SHI17119' => 'shi', 'SMO118G0201' => 'smo', 'SMO169G0247' => 'smo', 'SMO176G0006' => 'smo', 'SMO176G0015' => 'smo', 'SMO202G0006' => 'smo', 'SMO240G0050' => 'smo', 'SMO286G0009' => 'smo', 'SMO338G0033' => 'smo', 'SMO356G0533' => 'smo', 'SMO364G0382' => 'smo', 'SMO367G0166' => 'smo', 'SMO367G1098' => 'smo', 'Solyc01g009920.3' => 'sly', 'Solyc01g099300.3' => 'sly', 'Solyc02g084700.3' => 'sly', 'Solyc03g097520.3' => 'sly', 'Solyc06g071580.3' => 'sly', 'Solyc10g081760.3' => 'sly', 'Sopen01g005480' => 'spe', 'Sopen01g042850' => 'spe', 'Sopen02g029370' => 'spe', 'Sopen03g028280' => 'spe', 'Sopen06g027870' => 'spe', 'Sopen10g032270' => 'spe', 'Sp5g18180' => 'spa', 'Sp6g12880' => 'spa', 'Sp6g30850' => 'spa', 'Sp7g22960' => 'spa', 'Sp7g34010' => 'spa', 'SpUn1326_0010' => 'spa', 'TAR371G0242' => 'tar', 'TAR622G0638' => 'tar', 'TAR628G1548' => 'tar', 'TAR629G1079' => 'tar', 'TAR629G3413' => 'tar', 'THA.LOC104804249' => 'tha', 'THA.LOC104808315' => 'tha', 'THA.LOC104809238' => 'tha', 'THA.LOC104825484' => 'tha', 'Thecc.01G025500' => 'tca', 'Thecc.03G015800' => 'tca', 'Thecc.03G018000' => 'tca', 'Thecc.03G134800' => 'tca', 'Thecc.04G014700' => 'tca', 'Thhalv10006991m.g' => 'esa', 'Thhalv10012707m.g' => 'esa', 'Thhalv10015739m.g' => 'esa', 'Thhalv10024553m.g' => 'esa', 'Thhalv10024673m.g' => 'esa', 'Thhalv10029187m.g' => 'esa', 'TPR.G12971' => 'tpr', 'TPR.G29396' => 'tpr', 'TPR.G33376' => 'tpr', 'TPR.G35508' => 'tpr', 'TPR.G35516' => 'tpr', 'TPR.G37317' => 'tpr', 'TPR.G37389' => 'tpr', 'TPR.G37523' => 'tpr', 'TPR.G559' => 'tpr', 'TWI14G0070' => 'twi', 'TWI14G0729' => 'twi', 'TWI18G0596' => 'twi', 'TWI39G0780' => 'twi', 'TWI39G0850' => 'twi', 'TWI73G1052' => 'twi', 'unitig_52.g17485' => 'ugi', 'unitig_61.g26355' => 'ugi', 'vmacro01040' => 'vma', 'vmacro16731' => 'vma', 'vmacro18270' => 'vma', 'vmacro19142' => 'vma', 'vmacro19407' => 'vma', 'vmacro19408' => 'vma', 'vmacro21899' => 'vma', 'vmacro21900' => 'vma', 'vmacro21901' => 'vma', 'VMungo0251G0490' => 'vmu', 'VMungo0251G1748' => 'vmu', 'VMungo1309G0421' => 'vmu', 'Zm00001eb086500' => 'zma', 'Zm00001eb150680' => 'zma', 'Zm00001eb162330' => 'zma', 'Zm00001eb203130' => 'zma', 'Zm00001eb369480' => 'zma', 'Zm00001eb382340' => 'zma', 'Zm00001eb416360' => 'zma' ), 'gf_id' => 'HOM05D000902', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000902' ), 'data_identifier' => 'HOM05D000902', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000902', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '663', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02470' => 'bna', 'A01p16260' => 'bna', 'A02p01680' => 'bna', 'A03p16600' => 'bna', 'A03p55660' => 'bna', 'A03p64160' => 'bna', 'A03p64170' => 'bna', 'A08p31900' => 'bna', 'A09p59530' => 'bna', 'A10p08230' => 'bna', 'A10p25090' => 'bna', 'Aa31LG3G7100' => 'aar', 'Aa31LG3G7110' => 'aar', 'Aa31LG6G13160' => 'aar', 'Aa31LG7G10770' => 'aar', 'Aa31LG7G3830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2723' => 'aag', 'Actinidia08045' => 'ach', 'Actinidia08888' => 'ach', 'Actinidia18333' => 'ach', 'Actinidia19334' => 'ach', 'Actinidia25552' => 'ach', 'Actinidia26089' => 'ach', 'Actinidia30615' => 'ach', 'Actinidia30616' => 'ach', 'Actinidia33083' => 'ach', 'Actinidia35762' => 'ach', 'Ah.02g110620' => 'amhyb', 'Ah.11g046390' => 'amhyb', 'AL1G31670' => 'aly', 'AL6G23730' => 'aly', 'AL7G14740' => 'aly', 'AL7G14750' => 'aly', 'AL7G14760' => 'aly', 'AL7G28220' => 'aly', 'AL8G24940' => 'aly', 'Aqoxy3G01665' => 'aox', 'Aqoxy3G02853' => 'aox', 'Aqoxy5G01513' => 'aox', 'Aqoxy5G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8SKA4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ75LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKDA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0LJZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7REX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZP4YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWX7I5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2QKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS0L9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPCD8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q161UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC7XCF' => 'arhy', 'AT1G19100' => 'ath', 'AT4G24970' => 'ath', 'AT4G36270' => 'ath', 'AT4G36280' => 'ath', 'AT4G36290' => 'ath', 'AT5G13130' => 'ath', 'AT5G50780' => 'ath', 'ATR0582G266' => 'atr', 'ATR0661G195' => 'atr', 'ATR1152G031' => 'atr', 'Atru.chr11.2382' => 'acertr', 'Atru.chr12.2337' => 'acertr', 'Atru.chr3.744' => 'acertr', 'Atru.chr6.1870' => 'acertr', 'Atru.chr9.2515' => 'acertr', 'AUR62004120' => 'cqu', 'AUR62005667' => 'cqu', 'AUR62007634' => 'cqu', 'AUR62008186' => 'cqu', 'AUR62008187' => 'cqu', 'AUR62008188' => 'cqu', 'AUR62027954' => 'cqu', 'AUR62028766' => 'cqu', 'AUR62028767' => 'cqu', 'AUR62028768' => 'cqu', 'AUR62028886' => 'cqu', 'AUR62029563' => 'cqu', 'AUR62038832' => 'cqu', 'BcaB01g04149' => 'bca', 'BcaB03g12940' => 'bca', 'BcaB03g13090' => 'bca', 'BcaB03g14466' => 'bca', 'BcaB05g24035' => 'bca', 'BcaC01g06050' => 'bca', 'BcaC04g19148' => 'bca', 'BcaC04g20761' => 'bca', 'BcaC06g32845' => 'bca', 'BcaC07g41274' => 'bca', 'BcaC09g50827' => 'bca', 'BcaNung00741' => 'bca', 'BcaNung00742' => 'bca', 'BcaNung01859' => 'bca', 'BcaNung03985' => 'bca', 'BcaNung03989' => 'bca', 'BcaNung05661' => 'bca', 'BolC1t00257H' => 'bol', 'BolC1t01956H' => 'bol', 'BolC2t06534H' => 'bol', 'BolC3t14334H' => 'bol', 'BolC5t30451H' => 'bol', 'BolC7t45880H' => 'bol', 'BolC7t46586H' => 'bol', 'BolC8t49301H' => 'bol', 'BolC8t51837H' => 'bol', 'BolC9t56822H' => 'bol', 'BolC9t59235H' => 'bol', 'BraA01t00234Z' => 'bra', 'BraA01t01563Z' => 'bra', 'BraA02t05147Z' => 'bra', 'BraA03t10947Z' => 'bra', 'BraA03t14633Z' => 'bra', 'BraA08t35112Z' => 'bra', 'BraA09t41330Z' => 'bra', 'BraA10t44570Z' => 'bra', 'C01p02670' => 'bna', 'C01p20260' => 'bna', 'C02p05890' => 'bna', 'C03p19530' => 'bna', 'C05p17470' => 'bna', 'C07p53900' => 'bna', 'C07p61630' => 'bna', 'C08p16800' => 'bna', 'C08p42810' => 'bna', 'C09p39480' => 'bna', 'C09p63980' => 'bna', 'CAN.G1001.7' => 'can', 'CAN.G1034.55' => 'can', 'CAN.G143.7' => 'can', 'CAN.G3340.1' => 'can', 'CAN.G358.19' => 'can', 'CAN.G373.2' => 'can', 'CAN.G674.16' => 'can', 'CAN.G674.17' => 'can', 'CAN.G674.18' => 'can', 'CAN.G732.2' => 'can', 'CAN.G732.3' => 'can', 'CAN.G993.39' => 'can', 'CANSAT01G2052' => 'cansat', 'CANSAT80G0070' => 'cansat', 'CANSAT80G0483' => 'cansat', 'CANSAT80G0625' => 'cansat', 'CARHR019690' => 'chi', 'CARHR080280' => 'chi', 'CARHR152750' => 'chi', 'CARHR152760' => 'chi', 'CARHR152770' => 'chi', 'CARHR200340' => 'chi', 'CARHR232370' => 'chi', 'CARHR244670' => 'chi', 'CARHR244680' => 'chi', 'CARHR257520' => 'chi', 'Carub.0001s1872' => 'cru', 'Carub.0006s1130' => 'cru', 'Carub.0007s0396' => 'cru', 'Carub.0007s0397' => 'cru', 'Carub.0007s1608' => 'cru', 'Carub.0008s1068' => 'cru', 'Carub.0008s1077' => 'cru', 'Ca_16158_v3' => 'car', 'Ca_17571_v3' => 'car', 'Ca_21936_v3' => 'car', 'Ca_22350_v3' => 'car', 'CBR_g22445' => 'cbr', 'CBR_g26290' => 'cbr', 'Cc04_g09610' => 'ccan', 'Cc04_g12280' => 'ccan', 'Cc07_g10230' => 'ccan', 'CDE02G0093' => 'cde', 'CDE02G0701' => 'cde', 'CDE04G1050' => 'cde', 'CDE05G1833' => 'cde', 'CDE05G3058' => 'cde', 'CDE05G3380' => 'cde', 'CDE06G0536' => 'cde', 'Cfa006923' => 'cfa', 'Cfa009402' => 'cfa', 'Cfa018751' => 'cfa', 'Cfa019164' => 'cfa', 'Cfa022935' => 'cfa', 'Ciclev10019081m.g' => 'ccl', 'Ciclev10025076m.g' => 'ccl', 'Ciclev10030712m.g' => 'ccl', 'Ciclev10033760m.g' => 'ccl', 'CiPaw.05G105600' => 'cil', 'CiPaw.08G136700' => 'cil', 'CiPaw.11G003900' => 'cil', 'CiPaw.11G023700' => 'cil', 'CiPaw.12G003700' => 'cil', 'ClCG06G017100' => 'cla', 'ClCG06G018110' => 'cla', 'ClCG07G008800' => 'cla', 'ClCG07G015330' => 'cla', 'COL.COLO4_13698' => 'col', 'COL.COLO4_16659' => 'col', 'COL.COLO4_21986' => 'col', 'COL.COLO4_24049' => 'col', 'COL.COLO4_29061' => 'col', 'COL.COLO4_29075' => 'col', 'COL.COLO4_30094' => 'col', 'Cpa.g.c33689' => 'cpa', 'Cpa.g.sc108.39' => 'cpa', 'Cpa.g.sc108.41' => 'cpa', 'Cpa.g.sc1163.1' => 'cpa', 'Cpa.g.sc4.155' => 'cpa', 'Cpa.g.sc6.194' => 'cpa', 'CsaV3_1G000340' => 'csa', 'CsaV3_1G001400' => 'csa', 'CsaV3_4G002220' => 'csa', 'CsaV3_4G005370' => 'csa', 'CSS0007487' => 'camsi', 'CSS0008066' => 'camsi', 'CSS0009120' => 'camsi', 'CSS0015512' => 'camsi', 'CSS0022409' => 'camsi', 'CSS0025358' => 'camsi', 'CSS0044547' => 'camsi', 'DCAR_013057' => 'dca', 'DCAR_015058' => 'dca', 'DCAR_016027' => 'dca', 'DCAR_017327' => 'dca', 'DCAR_020743' => 'dca', 'DCAR_026157' => 'dca', 'DCAR_032339' => 'dca', 'DCAR_032340' => 'dca', 'Dinv11200' => 'din', 'Dinv11201' => 'din', 'Dinv20631' => 'din', 'Dinv23182' => 'din', 'Dinv33466' => 'din', 'Dinv33583' => 'din', 'Dinv38565' => 'din', 'Duzib068G0200' => 'dzi', 'Duzib147G0132' => 'dzi', 'Duzib147G0635' => 'dzi', 'Duzib205G1670' => 'dzi', 'Duzib251G0606' => 'dzi', 'ECA232G3336' => 'eca', 'ECA232G3763' => 'eca', 'ECA232G4845' => 'eca', 'ECA234G1607' => 'eca', 'ECA246G0932' => 'eca', 'ECA247G0781' => 'eca', 'ECA247G1932' => 'eca', 'ECA247G2079' => 'eca', 'ECA247G3338' => 'eca', 'ECA247G4115' => 'eca', 'EL10Ac3g06552' => 'bvu', 'EL10Ac5g10721' => 'bvu', 'EL10Ac5g10722' => 'bvu', 'EL10Ac5g10723' => 'bvu', 'EL10Ac5g11361' => 'bvu', 'EL10Ac6g13553' => 'bvu', 'EL10As8g23872' => 'bvu', 'Eucgr.B00250' => 'egr', 'Eucgr.B00251' => 'egr', 'Eucgr.B03533' => 'egr', 'Eucgr.I02381' => 'egr', 'Eucgr.K02700' => 'egr', 'FAN02G0174' => 'fan', 'FAN02G3146' => 'fan', 'FAN04G1672' => 'fan', 'FAN04G2273' => 'fan', 'FAN05G2791' => 'fan', 'FAN05G4035' => 'fan', 'FAN07G0834' => 'fan', 'FAN08G1198' => 'fan', 'FAN09G4182' => 'fan', 'FAN12G0496' => 'fan', 'FAN13G1027' => 'fan', 'FAN13G2951' => 'fan', 'FAN14G0705' => 'fan', 'FAN14G0720' => 'fan', 'FAN17G0201' => 'fan', 'FAN17G2665' => 'fan', 'FAN18G1456' => 'fan', 'FAN18G1525' => 'fan', 'FAN18G3500' => 'fan', 'FAN28G2670' => 'fan', 'FvH4_1g12391' => 'fve', 'FvH4_4g23220' => 'fve', 'FvH4_5g08810' => 'fve', 'FvH4_5g28960' => 'fve', 'FvH4_6g42820' => 'fve', 'FvH4_6g51110' => 'fve', 'Glyma.02G051802' => 'gma', 'Glyma.04G185300' => 'gma', 'Glyma.05G202900' => 'gma', 'Glyma.08G010300' => 'gma', 'Glyma.16G131900' => 'gma', 'Glyma.17G087900' => 'gma', 'Gohir.A07G048600' => 'ghi', 'Gohir.A11G179000' => 'ghi', 'Gohir.A12G140900' => 'ghi', 'Gohir.A12G140950' => 'ghi', 'Gohir.A12G191700' => 'ghi', 'Gohir.A13G086300' => 'ghi', 'Gohir.D07G052900' => 'ghi', 'Gohir.D11G186600' => 'ghi', 'Gohir.D12G145575' => 'ghi', 'Gohir.D12G145650' => 'ghi', 'Gohir.D12G145725' => 'ghi', 'Gohir.D12G194050' => 'ghi', 'Gohir.D13G091800' => 'ghi', 'Gorai.001G055900' => 'gra', 'Gorai.007G198400' => 'gra', 'Gorai.008G157000' => 'gra', 'Gorai.008G157100' => 'gra', 'Gorai.008G208700' => 'gra', 'Gorai.010G138700' => 'gra', 'GSVIVG01000977001' => 'vvi', 'GSVIVG01007708001' => 'vvi', 'GSVIVG01008587001' => 'vvi', 'GSVIVG01018849001' => 'vvi', 'GSVIVG01032432001' => 'vvi', 'HanXRQChr02g0034131' => 'han', 'HanXRQChr02g0035981' => 'han', 'HanXRQChr02g0035991' => 'han', 'HanXRQChr05g0155611' => 'han', 'HanXRQChr05g0155621' => 'han', 'HanXRQChr08g0236501' => 'han', 'HanXRQChr09g0261321' => 'han', 'HanXRQChr09g0272081' => 'han', 'HanXRQChr10g0310741' => 'han', 'HanXRQChr11g0325591' => 'han', 'HanXRQChr12g0385691' => 'han', 'HanXRQChr13g0387801' => 'han', 'HanXRQChr15g0463011' => 'han', 'Haze_03826' => 'cav', 'Haze_03827' => 'cav', 'Haze_07183' => 'cav', 'Haze_07537' => 'cav', 'Haze_07539' => 'cav', 'Haze_12461' => 'cav', 'Haze_16115' => 'cav', 'Haze_16808' => 'cav', 'Haze_18531' => 'cav', 'Hma1.2p1_0046F.1_g026700' => 'hma', 'Hma1.2p1_0046F.1_g026710' => 'hma', 'Hma1.2p1_0168F.1_g074340' => 'hma', 'Hma1.2p1_0266F.1_g107030' => 'hma', 'Hma1.2p1_0266F.1_g107060' => 'hma', 'Hma1.2p1_0275F.1_g110510' => 'hma', 'Hma1.2p1_0592F.1_g185490' => 'hma', 'Hma1.2p1_0592F.1_g185500' => 'hma', 'Hma1.2p1_0592F.1_g185510' => 'hma', 'Hma1.2p1_0592F.1_g185520' => 'hma', 'Hma1.2p1_0592F.1_g185530' => 'hma', 'Hma1.2p1_0818F.1_g223450' => 'hma', 'HPP92_009708' => 'vpl', 'HPP92_009793' => 'vpl', 'HPP92_009796' => 'vpl', 'HPP92_009797' => 'vpl', 'HPP92_014940' => 'vpl', 'HPP92_014988' => 'vpl', 'Hund02463' => 'sun', 'Hund02760' => 'sun', 'Hund05071' => 'sun', 'Hund10108' => 'sun', 'Hund11204' => 'sun', 'Hund14016' => 'sun', 'Hund16464' => 'sun', 'Lalb_Chr09g0333391' => 'lal', 'Lalb_Chr11g0070461' => 'lal', 'Lalb_Chr12g0201671' => 'lal', 'Lalb_Chr13g0297161' => 'lal', 'Lj1g0002823' => 'lja', 'Lj3C1074T6' => 'lonja', 'Lj4A212T28' => 'lonja', 'Lj4g0005516' => 'lja', 'Lj4g0013705' => 'lja', 'Lj4g0027865' => 'lja', 'Lj5C92G16' => 'lonja', 'Lj5C92T12' => 'lonja', 'Lj7C596T3' => 'lonja', 'Lj9A446G59' => 'lonja', 'Lj9A482G21' => 'lonja', 'Lsat_1_v5_gn_1_28261' => 'lsa', 'Lsat_1_v5_gn_1_28281' => 'lsa', 'Lsat_1_v5_gn_1_32721' => 'lsa', 'Lsat_1_v5_gn_4_151760' => 'lsa', 'Lsat_1_v5_gn_4_2120' => 'lsa', 'Lsat_1_v5_gn_4_75761' => 'lsa', 'Lsat_1_v5_gn_5_10920' => 'lsa', 'Manes.02G099900' => 'mes', 'Manes.11G096200' => 'mes', 'Manes.12G007200' => 'mes', 'Manes.14G048300' => 'mes', 'Manes.17G114700' => 'mes', 'Mapoly0002s0070' => 'mpo', 'Mapoly0029s0099' => 'mpo', 'MBI07_g24742_MAGBIO' => 'mbi', 'MBI10_g27988_MAGBIO' => 'mbi', 'MBI11_g13057_MAGBIO' => 'mbi', 'MD02G1137200' => 'mdo', 'MD06G1137200' => 'mdo', 'MD07G1122300' => 'mdo', 'MD09G1078200' => 'mdo', 'MD13G1123700' => 'mdo', 'MD14G1151900' => 'mdo', 'MD17G1030900' => 'mdo', 'MD17G1068200' => 'mdo', 'MD17G1068600' => 'mdo', 'Medtr3g077540' => 'mtr', 'Medtr4g105530' => 'mtr', 'Medtr8g076580' => 'mtr', 'Medtr8g076590' => 'mtr', 'Medtr8g096410' => 'mtr', 'MELO3C016411.2' => 'cme', 'MELO3C017780.2' => 'cme', 'MELO3C022560.2' => 'cme', 'MELO3C026187.2' => 'cme', 'MELO3C026286.2' => 'cme', 'MELO3C032854.2' => 'cme', 'Migut.H02495' => 'egut', 'Migut.I00561' => 'egut', 'Migut.K01015' => 'egut', 'Migut.K01016' => 'egut', 'Migut.L00743' => 'egut', 'Migut.L00744' => 'egut', 'Migut.L00746' => 'egut', 'Migut.L00798' => 'egut', 'Migut.L00799' => 'egut', 'Migut.N02096' => 'egut', 'MSTRG.11259' => 'ama', 'MSTRG.23142' => 'ama', 'MSTRG.2499' => 'ama', 'Nitab4.5_0000003g0730' => 'nta', 'Nitab4.5_0000137g0020' => 'nta', 'Nitab4.5_0000721g0210' => 'nta', 'Nitab4.5_0000723g0050' => 'nta', 'Nitab4.5_0000913g0070' => 'nta', 'Nitab4.5_0001332g0040' => 'nta', 'Nitab4.5_0001771g0050' => 'nta', 'Nitab4.5_0001918g0050' => 'nta', 'Nitab4.5_0002686g0030' => 'nta', 'Nitab4.5_0003156g0020' => 'nta', 'Nitab4.5_0003383g0040' => 'nta', 'Nitab4.5_0003918g0010' => 'nta', 'Nitab4.5_0006760g0010' => 'nta', 'Nn1g05981' => 'nnu', 'Nn1g06288' => 'nnu', 'Nn3g16371' => 'nnu', 'Nn3g16786' => 'nnu', 'Nn4g22232' => 'nnu', 'Oeu005144.1' => 'oeu', 'Oeu005145.1' => 'oeu', 'Oeu011348.1' => 'oeu', 'Oeu016415.1' => 'oeu', 'Oeu023501.1' => 'oeu', 'Oeu044473.1' => 'oeu', 'Oeu048892.2' => 'oeu', 'Os01g0549200' => 'osa', 'Os02g0469300' => 'osa', 'Os04g0311100' => 'osa', 'Os06g0474900' => 'osa', 'Os10g0181700' => 'osa', 'Os11g0454800' => 'osa', 'Peaxi162Scf00037g00714' => 'pax', 'Peaxi162Scf00084g01217' => 'pax', 'Peaxi162Scf00257g00217' => 'pax', 'Peaxi162Scf00516g00215' => 'pax', 'Peaxi162Scf00689g00123' => 'pax', 'PGR044G2719' => 'pgr', 'PGR083G1360' => 'pgr', 'PGR102G2849' => 'pgr', 'PGR119G2534' => 'pgr', 'PGSC0003DMG400003538' => 'stu', 'PGSC0003DMG400028138' => 'stu', 'PGSC0003DMG400031732' => 'stu', 'PGSC0003DMG400038165' => 'stu', 'Phvul.002G284600' => 'pvu', 'Phvul.003G258200' => 'pvu', 'Phvul.009G176500' => 'pvu', 'Potri.003G167201' => 'ptr', 'Potri.005G118400' => 'ptr', 'Potri.012G089000' => 'ptr', 'Potri.012G102800' => 'ptr', 'Potri.015G079400' => 'ptr', 'Potri.015G100900' => 'ptr', 'Pp3c14_9810' => 'ppa', 'Pp3c15_10450' => 'ppa', 'Pp3c20_19150' => 'ppa', 'Pp3c23_12740' => 'ppa', 'Pp3c23_6310' => 'ppa', 'Pp3c24_3720' => 'ppa', 'Pp3c27_2580' => 'ppa', 'Pp3c9_8990' => 'ppa', 'PRCOL_00002854' => 'pco', 'Prupe.1G221200' => 'ppe', 'Prupe.3G289000' => 'ppe', 'Prupe.5G147000' => 'ppe', 'Prupe.6G157300' => 'ppe', 'Prupe.7G163400' => 'ppe', 'Psat0s2177g0040' => 'psa', 'Psat3g174760' => 'psa', 'Psat3g192160' => 'psa', 'Psat4g058520' => 'psa', 'Psat4g096840' => 'psa', 'Psat7g037320' => 'psa', 'PSO017G1274' => 'pso', 'PSO017G5166' => 'pso', 'PSO063G4558' => 'pso', 'PSO170G4458' => 'pso', 'PSO170G5005' => 'pso', 'PSO210G6156' => 'pso', 'PSO210G6635' => 'pso', 'PSO210G7397' => 'pso', 'PSO210G7700' => 'pso', 'PSO455G0035' => 'pso', 'PSO455G0180' => 'pso', 'PSO478G4515' => 'pso', 'PSO832G1305' => 'pso', 'PSO832G3489' => 'pso', 'QL02p075247' => 'qlo', 'QL03p051148' => 'qlo', 'QL05p010313' => 'qlo', 'QL06p034627' => 'qlo', 'QL10p001889' => 'qlo', 'QL10p010846' => 'qlo', 'RcHm_v2.0_Chr1g0350621' => 'rch', 'RcHm_v2.0_Chr1g0350641' => 'rch', 'RcHm_v2.0_Chr2g0092891' => 'rch', 'RcHm_v2.0_Chr2g0100251' => 'rch', 'RcHm_v2.0_Chr2g0158661' => 'rch', 'RcHm_v2.0_Chr2g0172741' => 'rch', 'RcHm_v2.0_Chr4g0429571' => 'rch', 'RcHm_v2.0_Chr5g0042471' => 'rch', 'RcHm_v2.0_Chr7g0189451' => 'rch', 'Rhsim08G0052000' => 'rsi', 'Rhsim08G0174400' => 'rsi', 'Rhsim08G0193200' => 'rsi', 'Rhsim10G0214800' => 'rsi', 'Rhsim10G0214900' => 'rsi', 'Rhsim10G0215000' => 'rsi', 'Rhsim12G0022900' => 'rsi', 'Rhsim12G0177500' => 'rsi', 'Rhsim12G0177700' => 'rsi', 'Sabra03G0122600' => 'sbr', 'Sabra05G0097400' => 'sbr', 'Sabra12G0064100' => 'sbr', 'Sabra15G0121300' => 'sbr', 'SalBow2G0642' => 'sbo', 'SalBow5G2667' => 'sbo', 'SalBow5G4873' => 'sbo', 'SalBow8G2395' => 'sbo', 'Sc03g0003290' => 'sci', 'Sc10g0010130' => 'sci', 'Sc22g0003650' => 'sci', 'Sed0001603' => 'sed', 'Sed0004259' => 'sed', 'Sed0006789' => 'sed', 'Sed0011838' => 'sed', 'Sed0012964' => 'sed', 'Sed0016383' => 'sed', 'Sed0019010' => 'sed', 'Sed0020188' => 'sed', 'SEGI_04702' => 'sgi', 'SEGI_17231' => 'sgi', 'SEGI_18877' => 'sgi', 'SEGI_25196' => 'sgi', 'SEGI_25515' => 'sgi', 'SEGI_28445' => 'sgi', 'SEGI_37452' => 'sgi', 'SGA_v2.0_scaffold188G40336' => 'sas', 'SGA_v2.0_scaffold228G43247' => 'sas', 'SGA_v2.0_scaffold280G46853' => 'sas', 'SGA_v2.0_scaffold34G13808' => 'sas', 'SGA_v2.0_scaffold40G15576' => 'sas', 'SGA_v2.0_scaffold611G53188' => 'sas', 'SGA_v2.0_scaffold78G25461' => 'sas', 'SGA_v2.0_scaffold90G27888' => 'sas', 'SHI08601' => 'shi', 'SHI08606' => 'shi', 'SHI17117' => 'shi', 'SHI17119' => 'shi', 'SMO118G0201' => 'smo', 'SMO169G0247' => 'smo', 'SMO176G0006' => 'smo', 'SMO176G0015' => 'smo', 'SMO202G0006' => 'smo', 'SMO240G0050' => 'smo', 'SMO286G0009' => 'smo', 'SMO338G0033' => 'smo', 'SMO356G0533' => 'smo', 'SMO364G0382' => 'smo', 'SMO367G0166' => 'smo', 'SMO367G1098' => 'smo', 'Solyc01g009920.3' => 'sly', 'Solyc01g099300.3' => 'sly', 'Solyc02g084700.3' => 'sly', 'Solyc03g097520.3' => 'sly', 'Solyc06g071580.3' => 'sly', 'Solyc10g081760.3' => 'sly', 'Sopen01g005480' => 'spe', 'Sopen01g042850' => 'spe', 'Sopen02g029370' => 'spe', 'Sopen03g028280' => 'spe', 'Sopen06g027870' => 'spe', 'Sopen10g032270' => 'spe', 'Sp5g18180' => 'spa', 'Sp6g12880' => 'spa', 'Sp6g30850' => 'spa', 'Sp7g22960' => 'spa', 'Sp7g34010' => 'spa', 'SpUn1326_0010' => 'spa', 'TAR371G0242' => 'tar', 'TAR622G0638' => 'tar', 'TAR628G1548' => 'tar', 'TAR629G1079' => 'tar', 'TAR629G3413' => 'tar', 'THA.LOC104804249' => 'tha', 'THA.LOC104808315' => 'tha', 'THA.LOC104809238' => 'tha', 'THA.LOC104825484' => 'tha', 'Thecc.01G025500' => 'tca', 'Thecc.03G015800' => 'tca', 'Thecc.03G018000' => 'tca', 'Thecc.03G134800' => 'tca', 'Thecc.04G014700' => 'tca', 'Thhalv10006991m.g' => 'esa', 'Thhalv10012707m.g' => 'esa', 'Thhalv10015739m.g' => 'esa', 'Thhalv10024553m.g' => 'esa', 'Thhalv10024673m.g' => 'esa', 'Thhalv10029187m.g' => 'esa', 'TPR.G12971' => 'tpr', 'TPR.G29396' => 'tpr', 'TPR.G33376' => 'tpr', 'TPR.G35508' => 'tpr', 'TPR.G35516' => 'tpr', 'TPR.G37317' => 'tpr', 'TPR.G37389' => 'tpr', 'TPR.G37523' => 'tpr', 'TPR.G559' => 'tpr', 'TWI14G0070' => 'twi', 'TWI14G0729' => 'twi', 'TWI18G0596' => 'twi', 'TWI39G0780' => 'twi', 'TWI39G0850' => 'twi', 'TWI73G1052' => 'twi', 'unitig_52.g17485' => 'ugi', 'unitig_61.g26355' => 'ugi', 'vmacro01040' => 'vma', 'vmacro16731' => 'vma', 'vmacro18270' => 'vma', 'vmacro19142' => 'vma', 'vmacro19407' => 'vma', 'vmacro19408' => 'vma', 'vmacro21899' => 'vma', 'vmacro21900' => 'vma', 'vmacro21901' => 'vma', 'VMungo0251G0490' => 'vmu', 'VMungo0251G1748' => 'vmu', 'VMungo1309G0421' => 'vmu', 'Zm00001eb086500' => 'zma', 'Zm00001eb150680' => 'zma', 'Zm00001eb162330' => 'zma', 'Zm00001eb203130' => 'zma', 'Zm00001eb369480' => 'zma', 'Zm00001eb382340' => 'zma', 'Zm00001eb416360' => 'zma' ) $gf_id = 'HOM05D000902' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000902' ) $data_identifier = 'HOM05D000902' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 13, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 10, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 6, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 9, 'hma' => (int) 12, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 4, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 6, 'ppa' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 6, 'rch' => (int) 9, 'rsi' => (int) 9, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 12, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 3, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416360' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000902', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '663', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02470' => 'bna', 'A01p16260' => 'bna', 'A02p01680' => 'bna', 'A03p16600' => 'bna', 'A03p55660' => 'bna', 'A03p64160' => 'bna', 'A03p64170' => 'bna', 'A08p31900' => 'bna', 'A09p59530' => 'bna', 'A10p08230' => 'bna', 'A10p25090' => 'bna', 'Aa31LG3G7100' => 'aar', 'Aa31LG3G7110' => 'aar', 'Aa31LG6G13160' => 'aar', 'Aa31LG7G10770' => 'aar', 'Aa31LG7G3830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2723' => 'aag', 'Actinidia08045' => 'ach', 'Actinidia08888' => 'ach', 'Actinidia18333' => 'ach', 'Actinidia19334' => 'ach', 'Actinidia25552' => 'ach', 'Actinidia26089' => 'ach', 'Actinidia30615' => 'ach', 'Actinidia30616' => 'ach', 'Actinidia33083' => 'ach', 'Actinidia35762' => 'ach', 'Ah.02g110620' => 'amhyb', 'Ah.11g046390' => 'amhyb', 'AL1G31670' => 'aly', 'AL6G23730' => 'aly', 'AL7G14740' => 'aly', 'AL7G14750' => 'aly', 'AL7G14760' => 'aly', 'AL7G28220' => 'aly', 'AL8G24940' => 'aly', 'Aqoxy3G01665' => 'aox', 'Aqoxy3G02853' => 'aox', 'Aqoxy5G01513' => 'aox', 'Aqoxy5G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8SKA4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ75LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKDA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0LJZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7REX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZP4YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWX7I5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2QKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS0L9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPCD8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q161UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC7XCF' => 'arhy', 'AT1G19100' => 'ath', 'AT4G24970' => 'ath', 'AT4G36270' => 'ath', 'AT4G36280' => 'ath', 'AT4G36290' => 'ath', 'AT5G13130' => 'ath', 'AT5G50780' => 'ath', 'ATR0582G266' => 'atr', 'ATR0661G195' => 'atr', 'ATR1152G031' => 'atr', 'Atru.chr11.2382' => 'acertr', 'Atru.chr12.2337' => 'acertr', 'Atru.chr3.744' => 'acertr', 'Atru.chr6.1870' => 'acertr', 'Atru.chr9.2515' => 'acertr', 'AUR62004120' => 'cqu', 'AUR62005667' => 'cqu', 'AUR62007634' => 'cqu', 'AUR62008186' => 'cqu', 'AUR62008187' => 'cqu', 'AUR62008188' => 'cqu', 'AUR62027954' => 'cqu', 'AUR62028766' => 'cqu', 'AUR62028767' => 'cqu', 'AUR62028768' => 'cqu', 'AUR62028886' => 'cqu', 'AUR62029563' => 'cqu', 'AUR62038832' => 'cqu', 'BcaB01g04149' => 'bca', 'BcaB03g12940' => 'bca', 'BcaB03g13090' => 'bca', 'BcaB03g14466' => 'bca', 'BcaB05g24035' => 'bca', 'BcaC01g06050' => 'bca', 'BcaC04g19148' => 'bca', 'BcaC04g20761' => 'bca', 'BcaC06g32845' => 'bca', 'BcaC07g41274' => 'bca', 'BcaC09g50827' => 'bca', 'BcaNung00741' => 'bca', 'BcaNung00742' => 'bca', 'BcaNung01859' => 'bca', 'BcaNung03985' => 'bca', 'BcaNung03989' => 'bca', 'BcaNung05661' => 'bca', 'BolC1t00257H' => 'bol', 'BolC1t01956H' => 'bol', 'BolC2t06534H' => 'bol', 'BolC3t14334H' => 'bol', 'BolC5t30451H' => 'bol', 'BolC7t45880H' => 'bol', 'BolC7t46586H' => 'bol', 'BolC8t49301H' => 'bol', 'BolC8t51837H' => 'bol', 'BolC9t56822H' => 'bol', 'BolC9t59235H' => 'bol', 'BraA01t00234Z' => 'bra', 'BraA01t01563Z' => 'bra', 'BraA02t05147Z' => 'bra', 'BraA03t10947Z' => 'bra', 'BraA03t14633Z' => 'bra', 'BraA08t35112Z' => 'bra', 'BraA09t41330Z' => 'bra', 'BraA10t44570Z' => 'bra', 'C01p02670' => 'bna', 'C01p20260' => 'bna', 'C02p05890' => 'bna', 'C03p19530' => 'bna', 'C05p17470' => 'bna', 'C07p53900' => 'bna', 'C07p61630' => 'bna', 'C08p16800' => 'bna', 'C08p42810' => 'bna', 'C09p39480' => 'bna', 'C09p63980' => 'bna', 'CAN.G1001.7' => 'can', 'CAN.G1034.55' => 'can', 'CAN.G143.7' => 'can', 'CAN.G3340.1' => 'can', 'CAN.G358.19' => 'can', 'CAN.G373.2' => 'can', 'CAN.G674.16' => 'can', 'CAN.G674.17' => 'can', 'CAN.G674.18' => 'can', 'CAN.G732.2' => 'can', 'CAN.G732.3' => 'can', 'CAN.G993.39' => 'can', 'CANSAT01G2052' => 'cansat', 'CANSAT80G0070' => 'cansat', 'CANSAT80G0483' => 'cansat', 'CANSAT80G0625' => 'cansat', 'CARHR019690' => 'chi', 'CARHR080280' => 'chi', 'CARHR152750' => 'chi', 'CARHR152760' => 'chi', 'CARHR152770' => 'chi', 'CARHR200340' => 'chi', 'CARHR232370' => 'chi', 'CARHR244670' => 'chi', 'CARHR244680' => 'chi', 'CARHR257520' => 'chi', 'Carub.0001s1872' => 'cru', 'Carub.0006s1130' => 'cru', 'Carub.0007s0396' => 'cru', 'Carub.0007s0397' => 'cru', 'Carub.0007s1608' => 'cru', 'Carub.0008s1068' => 'cru', 'Carub.0008s1077' => 'cru', 'Ca_16158_v3' => 'car', 'Ca_17571_v3' => 'car', 'Ca_21936_v3' => 'car', 'Ca_22350_v3' => 'car', 'CBR_g22445' => 'cbr', 'CBR_g26290' => 'cbr', 'Cc04_g09610' => 'ccan', 'Cc04_g12280' => 'ccan', 'Cc07_g10230' => 'ccan', 'CDE02G0093' => 'cde', 'CDE02G0701' => 'cde', 'CDE04G1050' => 'cde', 'CDE05G1833' => 'cde', 'CDE05G3058' => 'cde', 'CDE05G3380' => 'cde', 'CDE06G0536' => 'cde', 'Cfa006923' => 'cfa', 'Cfa009402' => 'cfa', 'Cfa018751' => 'cfa', 'Cfa019164' => 'cfa', 'Cfa022935' => 'cfa', 'Ciclev10019081m.g' => 'ccl', 'Ciclev10025076m.g' => 'ccl', 'Ciclev10030712m.g' => 'ccl', 'Ciclev10033760m.g' => 'ccl', 'CiPaw.05G105600' => 'cil', 'CiPaw.08G136700' => 'cil', 'CiPaw.11G003900' => 'cil', 'CiPaw.11G023700' => 'cil', 'CiPaw.12G003700' => 'cil', 'ClCG06G017100' => 'cla', 'ClCG06G018110' => 'cla', 'ClCG07G008800' => 'cla', 'ClCG07G015330' => 'cla', 'COL.COLO4_13698' => 'col', 'COL.COLO4_16659' => 'col', 'COL.COLO4_21986' => 'col', 'COL.COLO4_24049' => 'col', 'COL.COLO4_29061' => 'col', 'COL.COLO4_29075' => 'col', 'COL.COLO4_30094' => 'col', 'Cpa.g.c33689' => 'cpa', 'Cpa.g.sc108.39' => 'cpa', 'Cpa.g.sc108.41' => 'cpa', 'Cpa.g.sc1163.1' => 'cpa', 'Cpa.g.sc4.155' => 'cpa', 'Cpa.g.sc6.194' => 'cpa', 'CsaV3_1G000340' => 'csa', 'CsaV3_1G001400' => 'csa', 'CsaV3_4G002220' => 'csa', 'CsaV3_4G005370' => 'csa', 'CSS0007487' => 'camsi', 'CSS0008066' => 'camsi', 'CSS0009120' => 'camsi', 'CSS0015512' => 'camsi', 'CSS0022409' => 'camsi', 'CSS0025358' => 'camsi', 'CSS0044547' => 'camsi', 'DCAR_013057' => 'dca', 'DCAR_015058' => 'dca', 'DCAR_016027' => 'dca', 'DCAR_017327' => 'dca', 'DCAR_020743' => 'dca', 'DCAR_026157' => 'dca', 'DCAR_032339' => 'dca', 'DCAR_032340' => 'dca', 'Dinv11200' => 'din', 'Dinv11201' => 'din', 'Dinv20631' => 'din', 'Dinv23182' => 'din', 'Dinv33466' => 'din', 'Dinv33583' => 'din', 'Dinv38565' => 'din', 'Duzib068G0200' => 'dzi', 'Duzib147G0132' => 'dzi', 'Duzib147G0635' => 'dzi', 'Duzib205G1670' => 'dzi', 'Duzib251G0606' => 'dzi', 'ECA232G3336' => 'eca', 'ECA232G3763' => 'eca', 'ECA232G4845' => 'eca', 'ECA234G1607' => 'eca', 'ECA246G0932' => 'eca', 'ECA247G0781' => 'eca', 'ECA247G1932' => 'eca', 'ECA247G2079' => 'eca', 'ECA247G3338' => 'eca', 'ECA247G4115' => 'eca', 'EL10Ac3g06552' => 'bvu', 'EL10Ac5g10721' => 'bvu', 'EL10Ac5g10722' => 'bvu', 'EL10Ac5g10723' => 'bvu', 'EL10Ac5g11361' => 'bvu', 'EL10Ac6g13553' => 'bvu', 'EL10As8g23872' => 'bvu', 'Eucgr.B00250' => 'egr', 'Eucgr.B00251' => 'egr', 'Eucgr.B03533' => 'egr', 'Eucgr.I02381' => 'egr', 'Eucgr.K02700' => 'egr', 'FAN02G0174' => 'fan', 'FAN02G3146' => 'fan', 'FAN04G1672' => 'fan', 'FAN04G2273' => 'fan', 'FAN05G2791' => 'fan', 'FAN05G4035' => 'fan', 'FAN07G0834' => 'fan', 'FAN08G1198' => 'fan', 'FAN09G4182' => 'fan', 'FAN12G0496' => 'fan', 'FAN13G1027' => 'fan', 'FAN13G2951' => 'fan', 'FAN14G0705' => 'fan', 'FAN14G0720' => 'fan', 'FAN17G0201' => 'fan', 'FAN17G2665' => 'fan', 'FAN18G1456' => 'fan', 'FAN18G1525' => 'fan', 'FAN18G3500' => 'fan', 'FAN28G2670' => 'fan', 'FvH4_1g12391' => 'fve', 'FvH4_4g23220' => 'fve', 'FvH4_5g08810' => 'fve', 'FvH4_5g28960' => 'fve', 'FvH4_6g42820' => 'fve', 'FvH4_6g51110' => 'fve', 'Glyma.02G051802' => 'gma', 'Glyma.04G185300' => 'gma', 'Glyma.05G202900' => 'gma', 'Glyma.08G010300' => 'gma', 'Glyma.16G131900' => 'gma', 'Glyma.17G087900' => 'gma', 'Gohir.A07G048600' => 'ghi', 'Gohir.A11G179000' => 'ghi', 'Gohir.A12G140900' => 'ghi', 'Gohir.A12G140950' => 'ghi', 'Gohir.A12G191700' => 'ghi', 'Gohir.A13G086300' => 'ghi', 'Gohir.D07G052900' => 'ghi', 'Gohir.D11G186600' => 'ghi', 'Gohir.D12G145575' => 'ghi', 'Gohir.D12G145650' => 'ghi', 'Gohir.D12G145725' => 'ghi', 'Gohir.D12G194050' => 'ghi', 'Gohir.D13G091800' => 'ghi', 'Gorai.001G055900' => 'gra', 'Gorai.007G198400' => 'gra', 'Gorai.008G157000' => 'gra', 'Gorai.008G157100' => 'gra', 'Gorai.008G208700' => 'gra', 'Gorai.010G138700' => 'gra', 'GSVIVG01000977001' => 'vvi', 'GSVIVG01007708001' => 'vvi', 'GSVIVG01008587001' => 'vvi', 'GSVIVG01018849001' => 'vvi', 'GSVIVG01032432001' => 'vvi', 'HanXRQChr02g0034131' => 'han', 'HanXRQChr02g0035981' => 'han', 'HanXRQChr02g0035991' => 'han', 'HanXRQChr05g0155611' => 'han', 'HanXRQChr05g0155621' => 'han', 'HanXRQChr08g0236501' => 'han', 'HanXRQChr09g0261321' => 'han', 'HanXRQChr09g0272081' => 'han', 'HanXRQChr10g0310741' => 'han', 'HanXRQChr11g0325591' => 'han', 'HanXRQChr12g0385691' => 'han', 'HanXRQChr13g0387801' => 'han', 'HanXRQChr15g0463011' => 'han', 'Haze_03826' => 'cav', 'Haze_03827' => 'cav', 'Haze_07183' => 'cav', 'Haze_07537' => 'cav', 'Haze_07539' => 'cav', 'Haze_12461' => 'cav', 'Haze_16115' => 'cav', 'Haze_16808' => 'cav', 'Haze_18531' => 'cav', 'Hma1.2p1_0046F.1_g026700' => 'hma', 'Hma1.2p1_0046F.1_g026710' => 'hma', 'Hma1.2p1_0168F.1_g074340' => 'hma', 'Hma1.2p1_0266F.1_g107030' => 'hma', 'Hma1.2p1_0266F.1_g107060' => 'hma', 'Hma1.2p1_0275F.1_g110510' => 'hma', 'Hma1.2p1_0592F.1_g185490' => 'hma', 'Hma1.2p1_0592F.1_g185500' => 'hma', 'Hma1.2p1_0592F.1_g185510' => 'hma', 'Hma1.2p1_0592F.1_g185520' => 'hma', 'Hma1.2p1_0592F.1_g185530' => 'hma', 'Hma1.2p1_0818F.1_g223450' => 'hma', 'HPP92_009708' => 'vpl', 'HPP92_009793' => 'vpl', 'HPP92_009796' => 'vpl', 'HPP92_009797' => 'vpl', 'HPP92_014940' => 'vpl', 'HPP92_014988' => 'vpl', 'Hund02463' => 'sun', 'Hund02760' => 'sun', 'Hund05071' => 'sun', 'Hund10108' => 'sun', 'Hund11204' => 'sun', 'Hund14016' => 'sun', 'Hund16464' => 'sun', 'Lalb_Chr09g0333391' => 'lal', 'Lalb_Chr11g0070461' => 'lal', 'Lalb_Chr12g0201671' => 'lal', 'Lalb_Chr13g0297161' => 'lal', 'Lj1g0002823' => 'lja', 'Lj3C1074T6' => 'lonja', 'Lj4A212T28' => 'lonja', 'Lj4g0005516' => 'lja', 'Lj4g0013705' => 'lja', 'Lj4g0027865' => 'lja', 'Lj5C92G16' => 'lonja', 'Lj5C92T12' => 'lonja', 'Lj7C596T3' => 'lonja', 'Lj9A446G59' => 'lonja', 'Lj9A482G21' => 'lonja', 'Lsat_1_v5_gn_1_28261' => 'lsa', 'Lsat_1_v5_gn_1_28281' => 'lsa', 'Lsat_1_v5_gn_1_32721' => 'lsa', 'Lsat_1_v5_gn_4_151760' => 'lsa', 'Lsat_1_v5_gn_4_2120' => 'lsa', 'Lsat_1_v5_gn_4_75761' => 'lsa', 'Lsat_1_v5_gn_5_10920' => 'lsa', 'Manes.02G099900' => 'mes', 'Manes.11G096200' => 'mes', 'Manes.12G007200' => 'mes', 'Manes.14G048300' => 'mes', 'Manes.17G114700' => 'mes', 'Mapoly0002s0070' => 'mpo', 'Mapoly0029s0099' => 'mpo', 'MBI07_g24742_MAGBIO' => 'mbi', 'MBI10_g27988_MAGBIO' => 'mbi', 'MBI11_g13057_MAGBIO' => 'mbi', 'MD02G1137200' => 'mdo', 'MD06G1137200' => 'mdo', 'MD07G1122300' => 'mdo', 'MD09G1078200' => 'mdo', 'MD13G1123700' => 'mdo', 'MD14G1151900' => 'mdo', 'MD17G1030900' => 'mdo', 'MD17G1068200' => 'mdo', 'MD17G1068600' => 'mdo', 'Medtr3g077540' => 'mtr', 'Medtr4g105530' => 'mtr', 'Medtr8g076580' => 'mtr', 'Medtr8g076590' => 'mtr', 'Medtr8g096410' => 'mtr', 'MELO3C016411.2' => 'cme', 'MELO3C017780.2' => 'cme', 'MELO3C022560.2' => 'cme', 'MELO3C026187.2' => 'cme', 'MELO3C026286.2' => 'cme', 'MELO3C032854.2' => 'cme', 'Migut.H02495' => 'egut', 'Migut.I00561' => 'egut', 'Migut.K01015' => 'egut', 'Migut.K01016' => 'egut', 'Migut.L00743' => 'egut', 'Migut.L00744' => 'egut', 'Migut.L00746' => 'egut', 'Migut.L00798' => 'egut', 'Migut.L00799' => 'egut', 'Migut.N02096' => 'egut', 'MSTRG.11259' => 'ama', 'MSTRG.23142' => 'ama', 'MSTRG.2499' => 'ama', 'Nitab4.5_0000003g0730' => 'nta', 'Nitab4.5_0000137g0020' => 'nta', 'Nitab4.5_0000721g0210' => 'nta', 'Nitab4.5_0000723g0050' => 'nta', 'Nitab4.5_0000913g0070' => 'nta', 'Nitab4.5_0001332g0040' => 'nta', 'Nitab4.5_0001771g0050' => 'nta', 'Nitab4.5_0001918g0050' => 'nta', 'Nitab4.5_0002686g0030' => 'nta', 'Nitab4.5_0003156g0020' => 'nta', 'Nitab4.5_0003383g0040' => 'nta', 'Nitab4.5_0003918g0010' => 'nta', 'Nitab4.5_0006760g0010' => 'nta', 'Nn1g05981' => 'nnu', 'Nn1g06288' => 'nnu', 'Nn3g16371' => 'nnu', 'Nn3g16786' => 'nnu', 'Nn4g22232' => 'nnu', 'Oeu005144.1' => 'oeu', 'Oeu005145.1' => 'oeu', 'Oeu011348.1' => 'oeu', 'Oeu016415.1' => 'oeu', 'Oeu023501.1' => 'oeu', 'Oeu044473.1' => 'oeu', 'Oeu048892.2' => 'oeu', 'Os01g0549200' => 'osa', 'Os02g0469300' => 'osa', 'Os04g0311100' => 'osa', 'Os06g0474900' => 'osa', 'Os10g0181700' => 'osa', 'Os11g0454800' => 'osa', 'Peaxi162Scf00037g00714' => 'pax', 'Peaxi162Scf00084g01217' => 'pax', 'Peaxi162Scf00257g00217' => 'pax', 'Peaxi162Scf00516g00215' => 'pax', 'Peaxi162Scf00689g00123' => 'pax', 'PGR044G2719' => 'pgr', 'PGR083G1360' => 'pgr', 'PGR102G2849' => 'pgr', 'PGR119G2534' => 'pgr', 'PGSC0003DMG400003538' => 'stu', 'PGSC0003DMG400028138' => 'stu', 'PGSC0003DMG400031732' => 'stu', 'PGSC0003DMG400038165' => 'stu', 'Phvul.002G284600' => 'pvu', 'Phvul.003G258200' => 'pvu', 'Phvul.009G176500' => 'pvu', 'Potri.003G167201' => 'ptr', 'Potri.005G118400' => 'ptr', 'Potri.012G089000' => 'ptr', 'Potri.012G102800' => 'ptr', 'Potri.015G079400' => 'ptr', 'Potri.015G100900' => 'ptr', 'Pp3c14_9810' => 'ppa', 'Pp3c15_10450' => 'ppa', 'Pp3c20_19150' => 'ppa', 'Pp3c23_12740' => 'ppa', 'Pp3c23_6310' => 'ppa', 'Pp3c24_3720' => 'ppa', 'Pp3c27_2580' => 'ppa', 'Pp3c9_8990' => 'ppa', 'PRCOL_00002854' => 'pco', 'Prupe.1G221200' => 'ppe', 'Prupe.3G289000' => 'ppe', 'Prupe.5G147000' => 'ppe', 'Prupe.6G157300' => 'ppe', 'Prupe.7G163400' => 'ppe', 'Psat0s2177g0040' => 'psa', 'Psat3g174760' => 'psa', 'Psat3g192160' => 'psa', 'Psat4g058520' => 'psa', 'Psat4g096840' => 'psa', 'Psat7g037320' => 'psa', 'PSO017G1274' => 'pso', 'PSO017G5166' => 'pso', 'PSO063G4558' => 'pso', 'PSO170G4458' => 'pso', 'PSO170G5005' => 'pso', 'PSO210G6156' => 'pso', 'PSO210G6635' => 'pso', 'PSO210G7397' => 'pso', 'PSO210G7700' => 'pso', 'PSO455G0035' => 'pso', 'PSO455G0180' => 'pso', 'PSO478G4515' => 'pso', 'PSO832G1305' => 'pso', 'PSO832G3489' => 'pso', 'QL02p075247' => 'qlo', 'QL03p051148' => 'qlo', 'QL05p010313' => 'qlo', 'QL06p034627' => 'qlo', 'QL10p001889' => 'qlo', 'QL10p010846' => 'qlo', 'RcHm_v2.0_Chr1g0350621' => 'rch', 'RcHm_v2.0_Chr1g0350641' => 'rch', 'RcHm_v2.0_Chr2g0092891' => 'rch', 'RcHm_v2.0_Chr2g0100251' => 'rch', 'RcHm_v2.0_Chr2g0158661' => 'rch', 'RcHm_v2.0_Chr2g0172741' => 'rch', 'RcHm_v2.0_Chr4g0429571' => 'rch', 'RcHm_v2.0_Chr5g0042471' => 'rch', 'RcHm_v2.0_Chr7g0189451' => 'rch', 'Rhsim08G0052000' => 'rsi', 'Rhsim08G0174400' => 'rsi', 'Rhsim08G0193200' => 'rsi', 'Rhsim10G0214800' => 'rsi', 'Rhsim10G0214900' => 'rsi', 'Rhsim10G0215000' => 'rsi', 'Rhsim12G0022900' => 'rsi', 'Rhsim12G0177500' => 'rsi', 'Rhsim12G0177700' => 'rsi', 'Sabra03G0122600' => 'sbr', 'Sabra05G0097400' => 'sbr', 'Sabra12G0064100' => 'sbr', 'Sabra15G0121300' => 'sbr', 'SalBow2G0642' => 'sbo', 'SalBow5G2667' => 'sbo', 'SalBow5G4873' => 'sbo', 'SalBow8G2395' => 'sbo', 'Sc03g0003290' => 'sci', 'Sc10g0010130' => 'sci', 'Sc22g0003650' => 'sci', 'Sed0001603' => 'sed', 'Sed0004259' => 'sed', 'Sed0006789' => 'sed', 'Sed0011838' => 'sed', 'Sed0012964' => 'sed', 'Sed0016383' => 'sed', 'Sed0019010' => 'sed', 'Sed0020188' => 'sed', 'SEGI_04702' => 'sgi', 'SEGI_17231' => 'sgi', 'SEGI_18877' => 'sgi', 'SEGI_25196' => 'sgi', 'SEGI_25515' => 'sgi', 'SEGI_28445' => 'sgi', 'SEGI_37452' => 'sgi', 'SGA_v2.0_scaffold188G40336' => 'sas', 'SGA_v2.0_scaffold228G43247' => 'sas', 'SGA_v2.0_scaffold280G46853' => 'sas', 'SGA_v2.0_scaffold34G13808' => 'sas', 'SGA_v2.0_scaffold40G15576' => 'sas', 'SGA_v2.0_scaffold611G53188' => 'sas', 'SGA_v2.0_scaffold78G25461' => 'sas', 'SGA_v2.0_scaffold90G27888' => 'sas', 'SHI08601' => 'shi', 'SHI08606' => 'shi', 'SHI17117' => 'shi', 'SHI17119' => 'shi', 'SMO118G0201' => 'smo', 'SMO169G0247' => 'smo', 'SMO176G0006' => 'smo', 'SMO176G0015' => 'smo', 'SMO202G0006' => 'smo', 'SMO240G0050' => 'smo', 'SMO286G0009' => 'smo', 'SMO338G0033' => 'smo', 'SMO356G0533' => 'smo', 'SMO364G0382' => 'smo', 'SMO367G0166' => 'smo', 'SMO367G1098' => 'smo', 'Solyc01g009920.3' => 'sly', 'Solyc01g099300.3' => 'sly', 'Solyc02g084700.3' => 'sly', 'Solyc03g097520.3' => 'sly', 'Solyc06g071580.3' => 'sly', 'Solyc10g081760.3' => 'sly', 'Sopen01g005480' => 'spe', 'Sopen01g042850' => 'spe', 'Sopen02g029370' => 'spe', 'Sopen03g028280' => 'spe', 'Sopen06g027870' => 'spe', 'Sopen10g032270' => 'spe', 'Sp5g18180' => 'spa', 'Sp6g12880' => 'spa', 'Sp6g30850' => 'spa', 'Sp7g22960' => 'spa', 'Sp7g34010' => 'spa', 'SpUn1326_0010' => 'spa', 'TAR371G0242' => 'tar', 'TAR622G0638' => 'tar', 'TAR628G1548' => 'tar', 'TAR629G1079' => 'tar', 'TAR629G3413' => 'tar', 'THA.LOC104804249' => 'tha', 'THA.LOC104808315' => 'tha', 'THA.LOC104809238' => 'tha', 'THA.LOC104825484' => 'tha', 'Thecc.01G025500' => 'tca', 'Thecc.03G015800' => 'tca', 'Thecc.03G018000' => 'tca', 'Thecc.03G134800' => 'tca', 'Thecc.04G014700' => 'tca', 'Thhalv10006991m.g' => 'esa', 'Thhalv10012707m.g' => 'esa', 'Thhalv10015739m.g' => 'esa', 'Thhalv10024553m.g' => 'esa', 'Thhalv10024673m.g' => 'esa', 'Thhalv10029187m.g' => 'esa', 'TPR.G12971' => 'tpr', 'TPR.G29396' => 'tpr', 'TPR.G33376' => 'tpr', 'TPR.G35508' => 'tpr', 'TPR.G35516' => 'tpr', 'TPR.G37317' => 'tpr', 'TPR.G37389' => 'tpr', 'TPR.G37523' => 'tpr', 'TPR.G559' => 'tpr', 'TWI14G0070' => 'twi', 'TWI14G0729' => 'twi', 'TWI18G0596' => 'twi', 'TWI39G0780' => 'twi', 'TWI39G0850' => 'twi', 'TWI73G1052' => 'twi', 'unitig_52.g17485' => 'ugi', 'unitig_61.g26355' => 'ugi', 'vmacro01040' => 'vma', 'vmacro16731' => 'vma', 'vmacro18270' => 'vma', 'vmacro19142' => 'vma', 'vmacro19407' => 'vma', 'vmacro19408' => 'vma', 'vmacro21899' => 'vma', 'vmacro21900' => 'vma', 'vmacro21901' => 'vma', 'VMungo0251G0490' => 'vmu', 'VMungo0251G1748' => 'vmu', 'VMungo1309G0421' => 'vmu', 'Zm00001eb086500' => 'zma', 'Zm00001eb150680' => 'zma', 'Zm00001eb162330' => 'zma', 'Zm00001eb203130' => 'zma', 'Zm00001eb369480' => 'zma', 'Zm00001eb382340' => 'zma', 'Zm00001eb416360' => 'zma' ), 'gf_id' => 'HOM05D000902', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000902' ), 'data_identifier' => 'HOM05D000902', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000902', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '663', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02470' => 'bna', 'A01p16260' => 'bna', 'A02p01680' => 'bna', 'A03p16600' => 'bna', 'A03p55660' => 'bna', 'A03p64160' => 'bna', 'A03p64170' => 'bna', 'A08p31900' => 'bna', 'A09p59530' => 'bna', 'A10p08230' => 'bna', 'A10p25090' => 'bna', 'Aa31LG3G7100' => 'aar', 'Aa31LG3G7110' => 'aar', 'Aa31LG6G13160' => 'aar', 'Aa31LG7G10770' => 'aar', 'Aa31LG7G3830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2723' => 'aag', 'Actinidia08045' => 'ach', 'Actinidia08888' => 'ach', 'Actinidia18333' => 'ach', 'Actinidia19334' => 'ach', 'Actinidia25552' => 'ach', 'Actinidia26089' => 'ach', 'Actinidia30615' => 'ach', 'Actinidia30616' => 'ach', 'Actinidia33083' => 'ach', 'Actinidia35762' => 'ach', 'Ah.02g110620' => 'amhyb', 'Ah.11g046390' => 'amhyb', 'AL1G31670' => 'aly', 'AL6G23730' => 'aly', 'AL7G14740' => 'aly', 'AL7G14750' => 'aly', 'AL7G14760' => 'aly', 'AL7G28220' => 'aly', 'AL8G24940' => 'aly', 'Aqoxy3G01665' => 'aox', 'Aqoxy3G02853' => 'aox', 'Aqoxy5G01513' => 'aox', 'Aqoxy5G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8SKA4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ75LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKDA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0LJZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7REX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZP4YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWX7I5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2QKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS0L9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPCD8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q161UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC7XCF' => 'arhy', 'AT1G19100' => 'ath', 'AT4G24970' => 'ath', 'AT4G36270' => 'ath', 'AT4G36280' => 'ath', 'AT4G36290' => 'ath', 'AT5G13130' => 'ath', 'AT5G50780' => 'ath', 'ATR0582G266' => 'atr', 'ATR0661G195' => 'atr', 'ATR1152G031' => 'atr', 'Atru.chr11.2382' => 'acertr', 'Atru.chr12.2337' => 'acertr', 'Atru.chr3.744' => 'acertr', 'Atru.chr6.1870' => 'acertr', 'Atru.chr9.2515' => 'acertr', 'AUR62004120' => 'cqu', 'AUR62005667' => 'cqu', 'AUR62007634' => 'cqu', 'AUR62008186' => 'cqu', 'AUR62008187' => 'cqu', 'AUR62008188' => 'cqu', 'AUR62027954' => 'cqu', 'AUR62028766' => 'cqu', 'AUR62028767' => 'cqu', 'AUR62028768' => 'cqu', 'AUR62028886' => 'cqu', 'AUR62029563' => 'cqu', 'AUR62038832' => 'cqu', 'BcaB01g04149' => 'bca', 'BcaB03g12940' => 'bca', 'BcaB03g13090' => 'bca', 'BcaB03g14466' => 'bca', 'BcaB05g24035' => 'bca', 'BcaC01g06050' => 'bca', 'BcaC04g19148' => 'bca', 'BcaC04g20761' => 'bca', 'BcaC06g32845' => 'bca', 'BcaC07g41274' => 'bca', 'BcaC09g50827' => 'bca', 'BcaNung00741' => 'bca', 'BcaNung00742' => 'bca', 'BcaNung01859' => 'bca', 'BcaNung03985' => 'bca', 'BcaNung03989' => 'bca', 'BcaNung05661' => 'bca', 'BolC1t00257H' => 'bol', 'BolC1t01956H' => 'bol', 'BolC2t06534H' => 'bol', 'BolC3t14334H' => 'bol', 'BolC5t30451H' => 'bol', 'BolC7t45880H' => 'bol', 'BolC7t46586H' => 'bol', 'BolC8t49301H' => 'bol', 'BolC8t51837H' => 'bol', 'BolC9t56822H' => 'bol', 'BolC9t59235H' => 'bol', 'BraA01t00234Z' => 'bra', 'BraA01t01563Z' => 'bra', 'BraA02t05147Z' => 'bra', 'BraA03t10947Z' => 'bra', 'BraA03t14633Z' => 'bra', 'BraA08t35112Z' => 'bra', 'BraA09t41330Z' => 'bra', 'BraA10t44570Z' => 'bra', 'C01p02670' => 'bna', 'C01p20260' => 'bna', 'C02p05890' => 'bna', 'C03p19530' => 'bna', 'C05p17470' => 'bna', 'C07p53900' => 'bna', 'C07p61630' => 'bna', 'C08p16800' => 'bna', 'C08p42810' => 'bna', 'C09p39480' => 'bna', 'C09p63980' => 'bna', 'CAN.G1001.7' => 'can', 'CAN.G1034.55' => 'can', 'CAN.G143.7' => 'can', 'CAN.G3340.1' => 'can', 'CAN.G358.19' => 'can', 'CAN.G373.2' => 'can', 'CAN.G674.16' => 'can', 'CAN.G674.17' => 'can', 'CAN.G674.18' => 'can', 'CAN.G732.2' => 'can', 'CAN.G732.3' => 'can', 'CAN.G993.39' => 'can', 'CANSAT01G2052' => 'cansat', 'CANSAT80G0070' => 'cansat', 'CANSAT80G0483' => 'cansat', 'CANSAT80G0625' => 'cansat', 'CARHR019690' => 'chi', 'CARHR080280' => 'chi', 'CARHR152750' => 'chi', 'CARHR152760' => 'chi', 'CARHR152770' => 'chi', 'CARHR200340' => 'chi', 'CARHR232370' => 'chi', 'CARHR244670' => 'chi', 'CARHR244680' => 'chi', 'CARHR257520' => 'chi', 'Carub.0001s1872' => 'cru', 'Carub.0006s1130' => 'cru', 'Carub.0007s0396' => 'cru', 'Carub.0007s0397' => 'cru', 'Carub.0007s1608' => 'cru', 'Carub.0008s1068' => 'cru', 'Carub.0008s1077' => 'cru', 'Ca_16158_v3' => 'car', 'Ca_17571_v3' => 'car', 'Ca_21936_v3' => 'car', 'Ca_22350_v3' => 'car', 'CBR_g22445' => 'cbr', 'CBR_g26290' => 'cbr', 'Cc04_g09610' => 'ccan', 'Cc04_g12280' => 'ccan', 'Cc07_g10230' => 'ccan', 'CDE02G0093' => 'cde', 'CDE02G0701' => 'cde', 'CDE04G1050' => 'cde', 'CDE05G1833' => 'cde', 'CDE05G3058' => 'cde', 'CDE05G3380' => 'cde', 'CDE06G0536' => 'cde', 'Cfa006923' => 'cfa', 'Cfa009402' => 'cfa', 'Cfa018751' => 'cfa', 'Cfa019164' => 'cfa', 'Cfa022935' => 'cfa', 'Ciclev10019081m.g' => 'ccl', 'Ciclev10025076m.g' => 'ccl', 'Ciclev10030712m.g' => 'ccl', 'Ciclev10033760m.g' => 'ccl', 'CiPaw.05G105600' => 'cil', 'CiPaw.08G136700' => 'cil', 'CiPaw.11G003900' => 'cil', 'CiPaw.11G023700' => 'cil', 'CiPaw.12G003700' => 'cil', 'ClCG06G017100' => 'cla', 'ClCG06G018110' => 'cla', 'ClCG07G008800' => 'cla', 'ClCG07G015330' => 'cla', 'COL.COLO4_13698' => 'col', 'COL.COLO4_16659' => 'col', 'COL.COLO4_21986' => 'col', 'COL.COLO4_24049' => 'col', 'COL.COLO4_29061' => 'col', 'COL.COLO4_29075' => 'col', 'COL.COLO4_30094' => 'col', 'Cpa.g.c33689' => 'cpa', 'Cpa.g.sc108.39' => 'cpa', 'Cpa.g.sc108.41' => 'cpa', 'Cpa.g.sc1163.1' => 'cpa', 'Cpa.g.sc4.155' => 'cpa', 'Cpa.g.sc6.194' => 'cpa', 'CsaV3_1G000340' => 'csa', 'CsaV3_1G001400' => 'csa', 'CsaV3_4G002220' => 'csa', 'CsaV3_4G005370' => 'csa', 'CSS0007487' => 'camsi', 'CSS0008066' => 'camsi', 'CSS0009120' => 'camsi', 'CSS0015512' => 'camsi', 'CSS0022409' => 'camsi', 'CSS0025358' => 'camsi', 'CSS0044547' => 'camsi', 'DCAR_013057' => 'dca', 'DCAR_015058' => 'dca', 'DCAR_016027' => 'dca', 'DCAR_017327' => 'dca', 'DCAR_020743' => 'dca', 'DCAR_026157' => 'dca', 'DCAR_032339' => 'dca', 'DCAR_032340' => 'dca', 'Dinv11200' => 'din', 'Dinv11201' => 'din', 'Dinv20631' => 'din', 'Dinv23182' => 'din', 'Dinv33466' => 'din', 'Dinv33583' => 'din', 'Dinv38565' => 'din', 'Duzib068G0200' => 'dzi', 'Duzib147G0132' => 'dzi', 'Duzib147G0635' => 'dzi', 'Duzib205G1670' => 'dzi', 'Duzib251G0606' => 'dzi', 'ECA232G3336' => 'eca', 'ECA232G3763' => 'eca', 'ECA232G4845' => 'eca', 'ECA234G1607' => 'eca', 'ECA246G0932' => 'eca', 'ECA247G0781' => 'eca', 'ECA247G1932' => 'eca', 'ECA247G2079' => 'eca', 'ECA247G3338' => 'eca', 'ECA247G4115' => 'eca', 'EL10Ac3g06552' => 'bvu', 'EL10Ac5g10721' => 'bvu', 'EL10Ac5g10722' => 'bvu', 'EL10Ac5g10723' => 'bvu', 'EL10Ac5g11361' => 'bvu', 'EL10Ac6g13553' => 'bvu', 'EL10As8g23872' => 'bvu', 'Eucgr.B00250' => 'egr', 'Eucgr.B00251' => 'egr', 'Eucgr.B03533' => 'egr', 'Eucgr.I02381' => 'egr', 'Eucgr.K02700' => 'egr', 'FAN02G0174' => 'fan', 'FAN02G3146' => 'fan', 'FAN04G1672' => 'fan', 'FAN04G2273' => 'fan', 'FAN05G2791' => 'fan', 'FAN05G4035' => 'fan', 'FAN07G0834' => 'fan', 'FAN08G1198' => 'fan', 'FAN09G4182' => 'fan', 'FAN12G0496' => 'fan', 'FAN13G1027' => 'fan', 'FAN13G2951' => 'fan', 'FAN14G0705' => 'fan', 'FAN14G0720' => 'fan', 'FAN17G0201' => 'fan', 'FAN17G2665' => 'fan', 'FAN18G1456' => 'fan', 'FAN18G1525' => 'fan', 'FAN18G3500' => 'fan', 'FAN28G2670' => 'fan', 'FvH4_1g12391' => 'fve', 'FvH4_4g23220' => 'fve', 'FvH4_5g08810' => 'fve', 'FvH4_5g28960' => 'fve', 'FvH4_6g42820' => 'fve', 'FvH4_6g51110' => 'fve', 'Glyma.02G051802' => 'gma', 'Glyma.04G185300' => 'gma', 'Glyma.05G202900' => 'gma', 'Glyma.08G010300' => 'gma', 'Glyma.16G131900' => 'gma', 'Glyma.17G087900' => 'gma', 'Gohir.A07G048600' => 'ghi', 'Gohir.A11G179000' => 'ghi', 'Gohir.A12G140900' => 'ghi', 'Gohir.A12G140950' => 'ghi', 'Gohir.A12G191700' => 'ghi', 'Gohir.A13G086300' => 'ghi', 'Gohir.D07G052900' => 'ghi', 'Gohir.D11G186600' => 'ghi', 'Gohir.D12G145575' => 'ghi', 'Gohir.D12G145650' => 'ghi', 'Gohir.D12G145725' => 'ghi', 'Gohir.D12G194050' => 'ghi', 'Gohir.D13G091800' => 'ghi', 'Gorai.001G055900' => 'gra', 'Gorai.007G198400' => 'gra', 'Gorai.008G157000' => 'gra', 'Gorai.008G157100' => 'gra', 'Gorai.008G208700' => 'gra', 'Gorai.010G138700' => 'gra', 'GSVIVG01000977001' => 'vvi', 'GSVIVG01007708001' => 'vvi', 'GSVIVG01008587001' => 'vvi', 'GSVIVG01018849001' => 'vvi', 'GSVIVG01032432001' => 'vvi', 'HanXRQChr02g0034131' => 'han', 'HanXRQChr02g0035981' => 'han', 'HanXRQChr02g0035991' => 'han', 'HanXRQChr05g0155611' => 'han', 'HanXRQChr05g0155621' => 'han', 'HanXRQChr08g0236501' => 'han', 'HanXRQChr09g0261321' => 'han', 'HanXRQChr09g0272081' => 'han', 'HanXRQChr10g0310741' => 'han', 'HanXRQChr11g0325591' => 'han', 'HanXRQChr12g0385691' => 'han', 'HanXRQChr13g0387801' => 'han', 'HanXRQChr15g0463011' => 'han', 'Haze_03826' => 'cav', 'Haze_03827' => 'cav', 'Haze_07183' => 'cav', 'Haze_07537' => 'cav', 'Haze_07539' => 'cav', 'Haze_12461' => 'cav', 'Haze_16115' => 'cav', 'Haze_16808' => 'cav', 'Haze_18531' => 'cav', 'Hma1.2p1_0046F.1_g026700' => 'hma', 'Hma1.2p1_0046F.1_g026710' => 'hma', 'Hma1.2p1_0168F.1_g074340' => 'hma', 'Hma1.2p1_0266F.1_g107030' => 'hma', 'Hma1.2p1_0266F.1_g107060' => 'hma', 'Hma1.2p1_0275F.1_g110510' => 'hma', 'Hma1.2p1_0592F.1_g185490' => 'hma', 'Hma1.2p1_0592F.1_g185500' => 'hma', 'Hma1.2p1_0592F.1_g185510' => 'hma', 'Hma1.2p1_0592F.1_g185520' => 'hma', 'Hma1.2p1_0592F.1_g185530' => 'hma', 'Hma1.2p1_0818F.1_g223450' => 'hma', 'HPP92_009708' => 'vpl', 'HPP92_009793' => 'vpl', 'HPP92_009796' => 'vpl', 'HPP92_009797' => 'vpl', 'HPP92_014940' => 'vpl', 'HPP92_014988' => 'vpl', 'Hund02463' => 'sun', 'Hund02760' => 'sun', 'Hund05071' => 'sun', 'Hund10108' => 'sun', 'Hund11204' => 'sun', 'Hund14016' => 'sun', 'Hund16464' => 'sun', 'Lalb_Chr09g0333391' => 'lal', 'Lalb_Chr11g0070461' => 'lal', 'Lalb_Chr12g0201671' => 'lal', 'Lalb_Chr13g0297161' => 'lal', 'Lj1g0002823' => 'lja', 'Lj3C1074T6' => 'lonja', 'Lj4A212T28' => 'lonja', 'Lj4g0005516' => 'lja', 'Lj4g0013705' => 'lja', 'Lj4g0027865' => 'lja', 'Lj5C92G16' => 'lonja', 'Lj5C92T12' => 'lonja', 'Lj7C596T3' => 'lonja', 'Lj9A446G59' => 'lonja', 'Lj9A482G21' => 'lonja', 'Lsat_1_v5_gn_1_28261' => 'lsa', 'Lsat_1_v5_gn_1_28281' => 'lsa', 'Lsat_1_v5_gn_1_32721' => 'lsa', 'Lsat_1_v5_gn_4_151760' => 'lsa', 'Lsat_1_v5_gn_4_2120' => 'lsa', 'Lsat_1_v5_gn_4_75761' => 'lsa', 'Lsat_1_v5_gn_5_10920' => 'lsa', 'Manes.02G099900' => 'mes', 'Manes.11G096200' => 'mes', 'Manes.12G007200' => 'mes', 'Manes.14G048300' => 'mes', 'Manes.17G114700' => 'mes', 'Mapoly0002s0070' => 'mpo', 'Mapoly0029s0099' => 'mpo', 'MBI07_g24742_MAGBIO' => 'mbi', 'MBI10_g27988_MAGBIO' => 'mbi', 'MBI11_g13057_MAGBIO' => 'mbi', 'MD02G1137200' => 'mdo', 'MD06G1137200' => 'mdo', 'MD07G1122300' => 'mdo', 'MD09G1078200' => 'mdo', 'MD13G1123700' => 'mdo', 'MD14G1151900' => 'mdo', 'MD17G1030900' => 'mdo', 'MD17G1068200' => 'mdo', 'MD17G1068600' => 'mdo', 'Medtr3g077540' => 'mtr', 'Medtr4g105530' => 'mtr', 'Medtr8g076580' => 'mtr', 'Medtr8g076590' => 'mtr', 'Medtr8g096410' => 'mtr', 'MELO3C016411.2' => 'cme', 'MELO3C017780.2' => 'cme', 'MELO3C022560.2' => 'cme', 'MELO3C026187.2' => 'cme', 'MELO3C026286.2' => 'cme', 'MELO3C032854.2' => 'cme', 'Migut.H02495' => 'egut', 'Migut.I00561' => 'egut', 'Migut.K01015' => 'egut', 'Migut.K01016' => 'egut', 'Migut.L00743' => 'egut', 'Migut.L00744' => 'egut', 'Migut.L00746' => 'egut', 'Migut.L00798' => 'egut', 'Migut.L00799' => 'egut', 'Migut.N02096' => 'egut', 'MSTRG.11259' => 'ama', 'MSTRG.23142' => 'ama', 'MSTRG.2499' => 'ama', 'Nitab4.5_0000003g0730' => 'nta', 'Nitab4.5_0000137g0020' => 'nta', 'Nitab4.5_0000721g0210' => 'nta', 'Nitab4.5_0000723g0050' => 'nta', 'Nitab4.5_0000913g0070' => 'nta', 'Nitab4.5_0001332g0040' => 'nta', 'Nitab4.5_0001771g0050' => 'nta', 'Nitab4.5_0001918g0050' => 'nta', 'Nitab4.5_0002686g0030' => 'nta', 'Nitab4.5_0003156g0020' => 'nta', 'Nitab4.5_0003383g0040' => 'nta', 'Nitab4.5_0003918g0010' => 'nta', 'Nitab4.5_0006760g0010' => 'nta', 'Nn1g05981' => 'nnu', 'Nn1g06288' => 'nnu', 'Nn3g16371' => 'nnu', 'Nn3g16786' => 'nnu', 'Nn4g22232' => 'nnu', 'Oeu005144.1' => 'oeu', 'Oeu005145.1' => 'oeu', 'Oeu011348.1' => 'oeu', 'Oeu016415.1' => 'oeu', 'Oeu023501.1' => 'oeu', 'Oeu044473.1' => 'oeu', 'Oeu048892.2' => 'oeu', 'Os01g0549200' => 'osa', 'Os02g0469300' => 'osa', 'Os04g0311100' => 'osa', 'Os06g0474900' => 'osa', 'Os10g0181700' => 'osa', 'Os11g0454800' => 'osa', 'Peaxi162Scf00037g00714' => 'pax', 'Peaxi162Scf00084g01217' => 'pax', 'Peaxi162Scf00257g00217' => 'pax', 'Peaxi162Scf00516g00215' => 'pax', 'Peaxi162Scf00689g00123' => 'pax', 'PGR044G2719' => 'pgr', 'PGR083G1360' => 'pgr', 'PGR102G2849' => 'pgr', 'PGR119G2534' => 'pgr', 'PGSC0003DMG400003538' => 'stu', 'PGSC0003DMG400028138' => 'stu', 'PGSC0003DMG400031732' => 'stu', 'PGSC0003DMG400038165' => 'stu', 'Phvul.002G284600' => 'pvu', 'Phvul.003G258200' => 'pvu', 'Phvul.009G176500' => 'pvu', 'Potri.003G167201' => 'ptr', 'Potri.005G118400' => 'ptr', 'Potri.012G089000' => 'ptr', 'Potri.012G102800' => 'ptr', 'Potri.015G079400' => 'ptr', 'Potri.015G100900' => 'ptr', 'Pp3c14_9810' => 'ppa', 'Pp3c15_10450' => 'ppa', 'Pp3c20_19150' => 'ppa', 'Pp3c23_12740' => 'ppa', 'Pp3c23_6310' => 'ppa', 'Pp3c24_3720' => 'ppa', 'Pp3c27_2580' => 'ppa', 'Pp3c9_8990' => 'ppa', 'PRCOL_00002854' => 'pco', 'Prupe.1G221200' => 'ppe', 'Prupe.3G289000' => 'ppe', 'Prupe.5G147000' => 'ppe', 'Prupe.6G157300' => 'ppe', 'Prupe.7G163400' => 'ppe', 'Psat0s2177g0040' => 'psa', 'Psat3g174760' => 'psa', 'Psat3g192160' => 'psa', 'Psat4g058520' => 'psa', 'Psat4g096840' => 'psa', 'Psat7g037320' => 'psa', 'PSO017G1274' => 'pso', 'PSO017G5166' => 'pso', 'PSO063G4558' => 'pso', 'PSO170G4458' => 'pso', 'PSO170G5005' => 'pso', 'PSO210G6156' => 'pso', 'PSO210G6635' => 'pso', 'PSO210G7397' => 'pso', 'PSO210G7700' => 'pso', 'PSO455G0035' => 'pso', 'PSO455G0180' => 'pso', 'PSO478G4515' => 'pso', 'PSO832G1305' => 'pso', 'PSO832G3489' => 'pso', 'QL02p075247' => 'qlo', 'QL03p051148' => 'qlo', 'QL05p010313' => 'qlo', 'QL06p034627' => 'qlo', 'QL10p001889' => 'qlo', 'QL10p010846' => 'qlo', 'RcHm_v2.0_Chr1g0350621' => 'rch', 'RcHm_v2.0_Chr1g0350641' => 'rch', 'RcHm_v2.0_Chr2g0092891' => 'rch', 'RcHm_v2.0_Chr2g0100251' => 'rch', 'RcHm_v2.0_Chr2g0158661' => 'rch', 'RcHm_v2.0_Chr2g0172741' => 'rch', 'RcHm_v2.0_Chr4g0429571' => 'rch', 'RcHm_v2.0_Chr5g0042471' => 'rch', 'RcHm_v2.0_Chr7g0189451' => 'rch', 'Rhsim08G0052000' => 'rsi', 'Rhsim08G0174400' => 'rsi', 'Rhsim08G0193200' => 'rsi', 'Rhsim10G0214800' => 'rsi', 'Rhsim10G0214900' => 'rsi', 'Rhsim10G0215000' => 'rsi', 'Rhsim12G0022900' => 'rsi', 'Rhsim12G0177500' => 'rsi', 'Rhsim12G0177700' => 'rsi', 'Sabra03G0122600' => 'sbr', 'Sabra05G0097400' => 'sbr', 'Sabra12G0064100' => 'sbr', 'Sabra15G0121300' => 'sbr', 'SalBow2G0642' => 'sbo', 'SalBow5G2667' => 'sbo', 'SalBow5G4873' => 'sbo', 'SalBow8G2395' => 'sbo', 'Sc03g0003290' => 'sci', 'Sc10g0010130' => 'sci', 'Sc22g0003650' => 'sci', 'Sed0001603' => 'sed', 'Sed0004259' => 'sed', 'Sed0006789' => 'sed', 'Sed0011838' => 'sed', 'Sed0012964' => 'sed', 'Sed0016383' => 'sed', 'Sed0019010' => 'sed', 'Sed0020188' => 'sed', 'SEGI_04702' => 'sgi', 'SEGI_17231' => 'sgi', 'SEGI_18877' => 'sgi', 'SEGI_25196' => 'sgi', 'SEGI_25515' => 'sgi', 'SEGI_28445' => 'sgi', 'SEGI_37452' => 'sgi', 'SGA_v2.0_scaffold188G40336' => 'sas', 'SGA_v2.0_scaffold228G43247' => 'sas', 'SGA_v2.0_scaffold280G46853' => 'sas', 'SGA_v2.0_scaffold34G13808' => 'sas', 'SGA_v2.0_scaffold40G15576' => 'sas', 'SGA_v2.0_scaffold611G53188' => 'sas', 'SGA_v2.0_scaffold78G25461' => 'sas', 'SGA_v2.0_scaffold90G27888' => 'sas', 'SHI08601' => 'shi', 'SHI08606' => 'shi', 'SHI17117' => 'shi', 'SHI17119' => 'shi', 'SMO118G0201' => 'smo', 'SMO169G0247' => 'smo', 'SMO176G0006' => 'smo', 'SMO176G0015' => 'smo', 'SMO202G0006' => 'smo', 'SMO240G0050' => 'smo', 'SMO286G0009' => 'smo', 'SMO338G0033' => 'smo', 'SMO356G0533' => 'smo', 'SMO364G0382' => 'smo', 'SMO367G0166' => 'smo', 'SMO367G1098' => 'smo', 'Solyc01g009920.3' => 'sly', 'Solyc01g099300.3' => 'sly', 'Solyc02g084700.3' => 'sly', 'Solyc03g097520.3' => 'sly', 'Solyc06g071580.3' => 'sly', 'Solyc10g081760.3' => 'sly', 'Sopen01g005480' => 'spe', 'Sopen01g042850' => 'spe', 'Sopen02g029370' => 'spe', 'Sopen03g028280' => 'spe', 'Sopen06g027870' => 'spe', 'Sopen10g032270' => 'spe', 'Sp5g18180' => 'spa', 'Sp6g12880' => 'spa', 'Sp6g30850' => 'spa', 'Sp7g22960' => 'spa', 'Sp7g34010' => 'spa', 'SpUn1326_0010' => 'spa', 'TAR371G0242' => 'tar', 'TAR622G0638' => 'tar', 'TAR628G1548' => 'tar', 'TAR629G1079' => 'tar', 'TAR629G3413' => 'tar', 'THA.LOC104804249' => 'tha', 'THA.LOC104808315' => 'tha', 'THA.LOC104809238' => 'tha', 'THA.LOC104825484' => 'tha', 'Thecc.01G025500' => 'tca', 'Thecc.03G015800' => 'tca', 'Thecc.03G018000' => 'tca', 'Thecc.03G134800' => 'tca', 'Thecc.04G014700' => 'tca', 'Thhalv10006991m.g' => 'esa', 'Thhalv10012707m.g' => 'esa', 'Thhalv10015739m.g' => 'esa', 'Thhalv10024553m.g' => 'esa', 'Thhalv10024673m.g' => 'esa', 'Thhalv10029187m.g' => 'esa', 'TPR.G12971' => 'tpr', 'TPR.G29396' => 'tpr', 'TPR.G33376' => 'tpr', 'TPR.G35508' => 'tpr', 'TPR.G35516' => 'tpr', 'TPR.G37317' => 'tpr', 'TPR.G37389' => 'tpr', 'TPR.G37523' => 'tpr', 'TPR.G559' => 'tpr', 'TWI14G0070' => 'twi', 'TWI14G0729' => 'twi', 'TWI18G0596' => 'twi', 'TWI39G0780' => 'twi', 'TWI39G0850' => 'twi', 'TWI73G1052' => 'twi', 'unitig_52.g17485' => 'ugi', 'unitig_61.g26355' => 'ugi', 'vmacro01040' => 'vma', 'vmacro16731' => 'vma', 'vmacro18270' => 'vma', 'vmacro19142' => 'vma', 'vmacro19407' => 'vma', 'vmacro19408' => 'vma', 'vmacro21899' => 'vma', 'vmacro21900' => 'vma', 'vmacro21901' => 'vma', 'VMungo0251G0490' => 'vmu', 'VMungo0251G1748' => 'vmu', 'VMungo1309G0421' => 'vmu', 'Zm00001eb086500' => 'zma', 'Zm00001eb150680' => 'zma', 'Zm00001eb162330' => 'zma', 'Zm00001eb203130' => 'zma', 'Zm00001eb369480' => 'zma', 'Zm00001eb382340' => 'zma', 'Zm00001eb416360' => 'zma' ) $gf_id = 'HOM05D000902' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000902' ) $data_identifier = 'HOM05D000902' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 13, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 10, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 6, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 9, 'hma' => (int) 12, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 4, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 6, 'ppa' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 6, 'rch' => (int) 9, 'rsi' => (int) 9, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 12, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 3, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416360' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000902', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '663', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02470' => 'bna', 'A01p16260' => 'bna', 'A02p01680' => 'bna', 'A03p16600' => 'bna', 'A03p55660' => 'bna', 'A03p64160' => 'bna', 'A03p64170' => 'bna', 'A08p31900' => 'bna', 'A09p59530' => 'bna', 'A10p08230' => 'bna', 'A10p25090' => 'bna', 'Aa31LG3G7100' => 'aar', 'Aa31LG3G7110' => 'aar', 'Aa31LG6G13160' => 'aar', 'Aa31LG7G10770' => 'aar', 'Aa31LG7G3830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2723' => 'aag', 'Actinidia08045' => 'ach', 'Actinidia08888' => 'ach', 'Actinidia18333' => 'ach', 'Actinidia19334' => 'ach', 'Actinidia25552' => 'ach', 'Actinidia26089' => 'ach', 'Actinidia30615' => 'ach', 'Actinidia30616' => 'ach', 'Actinidia33083' => 'ach', 'Actinidia35762' => 'ach', 'Ah.02g110620' => 'amhyb', 'Ah.11g046390' => 'amhyb', 'AL1G31670' => 'aly', 'AL6G23730' => 'aly', 'AL7G14740' => 'aly', 'AL7G14750' => 'aly', 'AL7G14760' => 'aly', 'AL7G28220' => 'aly', 'AL8G24940' => 'aly', 'Aqoxy3G01665' => 'aox', 'Aqoxy3G02853' => 'aox', 'Aqoxy5G01513' => 'aox', 'Aqoxy5G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8SKA4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ75LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKDA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0LJZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7REX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZP4YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWX7I5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2QKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS0L9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPCD8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q161UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC7XCF' => 'arhy', 'AT1G19100' => 'ath', 'AT4G24970' => 'ath', 'AT4G36270' => 'ath', 'AT4G36280' => 'ath', 'AT4G36290' => 'ath', 'AT5G13130' => 'ath', 'AT5G50780' => 'ath', 'ATR0582G266' => 'atr', 'ATR0661G195' => 'atr', 'ATR1152G031' => 'atr', 'Atru.chr11.2382' => 'acertr', 'Atru.chr12.2337' => 'acertr', 'Atru.chr3.744' => 'acertr', 'Atru.chr6.1870' => 'acertr', 'Atru.chr9.2515' => 'acertr', 'AUR62004120' => 'cqu', 'AUR62005667' => 'cqu', 'AUR62007634' => 'cqu', 'AUR62008186' => 'cqu', 'AUR62008187' => 'cqu', 'AUR62008188' => 'cqu', 'AUR62027954' => 'cqu', 'AUR62028766' => 'cqu', 'AUR62028767' => 'cqu', 'AUR62028768' => 'cqu', 'AUR62028886' => 'cqu', 'AUR62029563' => 'cqu', 'AUR62038832' => 'cqu', 'BcaB01g04149' => 'bca', 'BcaB03g12940' => 'bca', 'BcaB03g13090' => 'bca', 'BcaB03g14466' => 'bca', 'BcaB05g24035' => 'bca', 'BcaC01g06050' => 'bca', 'BcaC04g19148' => 'bca', 'BcaC04g20761' => 'bca', 'BcaC06g32845' => 'bca', 'BcaC07g41274' => 'bca', 'BcaC09g50827' => 'bca', 'BcaNung00741' => 'bca', 'BcaNung00742' => 'bca', 'BcaNung01859' => 'bca', 'BcaNung03985' => 'bca', 'BcaNung03989' => 'bca', 'BcaNung05661' => 'bca', 'BolC1t00257H' => 'bol', 'BolC1t01956H' => 'bol', 'BolC2t06534H' => 'bol', 'BolC3t14334H' => 'bol', 'BolC5t30451H' => 'bol', 'BolC7t45880H' => 'bol', 'BolC7t46586H' => 'bol', 'BolC8t49301H' => 'bol', 'BolC8t51837H' => 'bol', 'BolC9t56822H' => 'bol', 'BolC9t59235H' => 'bol', 'BraA01t00234Z' => 'bra', 'BraA01t01563Z' => 'bra', 'BraA02t05147Z' => 'bra', 'BraA03t10947Z' => 'bra', 'BraA03t14633Z' => 'bra', 'BraA08t35112Z' => 'bra', 'BraA09t41330Z' => 'bra', 'BraA10t44570Z' => 'bra', 'C01p02670' => 'bna', 'C01p20260' => 'bna', 'C02p05890' => 'bna', 'C03p19530' => 'bna', 'C05p17470' => 'bna', 'C07p53900' => 'bna', 'C07p61630' => 'bna', 'C08p16800' => 'bna', 'C08p42810' => 'bna', 'C09p39480' => 'bna', 'C09p63980' => 'bna', 'CAN.G1001.7' => 'can', 'CAN.G1034.55' => 'can', 'CAN.G143.7' => 'can', 'CAN.G3340.1' => 'can', 'CAN.G358.19' => 'can', 'CAN.G373.2' => 'can', 'CAN.G674.16' => 'can', 'CAN.G674.17' => 'can', 'CAN.G674.18' => 'can', 'CAN.G732.2' => 'can', 'CAN.G732.3' => 'can', 'CAN.G993.39' => 'can', 'CANSAT01G2052' => 'cansat', 'CANSAT80G0070' => 'cansat', 'CANSAT80G0483' => 'cansat', 'CANSAT80G0625' => 'cansat', 'CARHR019690' => 'chi', 'CARHR080280' => 'chi', 'CARHR152750' => 'chi', 'CARHR152760' => 'chi', 'CARHR152770' => 'chi', 'CARHR200340' => 'chi', 'CARHR232370' => 'chi', 'CARHR244670' => 'chi', 'CARHR244680' => 'chi', 'CARHR257520' => 'chi', 'Carub.0001s1872' => 'cru', 'Carub.0006s1130' => 'cru', 'Carub.0007s0396' => 'cru', 'Carub.0007s0397' => 'cru', 'Carub.0007s1608' => 'cru', 'Carub.0008s1068' => 'cru', 'Carub.0008s1077' => 'cru', 'Ca_16158_v3' => 'car', 'Ca_17571_v3' => 'car', 'Ca_21936_v3' => 'car', 'Ca_22350_v3' => 'car', 'CBR_g22445' => 'cbr', 'CBR_g26290' => 'cbr', 'Cc04_g09610' => 'ccan', 'Cc04_g12280' => 'ccan', 'Cc07_g10230' => 'ccan', 'CDE02G0093' => 'cde', 'CDE02G0701' => 'cde', 'CDE04G1050' => 'cde', 'CDE05G1833' => 'cde', 'CDE05G3058' => 'cde', 'CDE05G3380' => 'cde', 'CDE06G0536' => 'cde', 'Cfa006923' => 'cfa', 'Cfa009402' => 'cfa', 'Cfa018751' => 'cfa', 'Cfa019164' => 'cfa', 'Cfa022935' => 'cfa', 'Ciclev10019081m.g' => 'ccl', 'Ciclev10025076m.g' => 'ccl', 'Ciclev10030712m.g' => 'ccl', 'Ciclev10033760m.g' => 'ccl', 'CiPaw.05G105600' => 'cil', 'CiPaw.08G136700' => 'cil', 'CiPaw.11G003900' => 'cil', 'CiPaw.11G023700' => 'cil', 'CiPaw.12G003700' => 'cil', 'ClCG06G017100' => 'cla', 'ClCG06G018110' => 'cla', 'ClCG07G008800' => 'cla', 'ClCG07G015330' => 'cla', 'COL.COLO4_13698' => 'col', 'COL.COLO4_16659' => 'col', 'COL.COLO4_21986' => 'col', 'COL.COLO4_24049' => 'col', 'COL.COLO4_29061' => 'col', 'COL.COLO4_29075' => 'col', 'COL.COLO4_30094' => 'col', 'Cpa.g.c33689' => 'cpa', 'Cpa.g.sc108.39' => 'cpa', 'Cpa.g.sc108.41' => 'cpa', 'Cpa.g.sc1163.1' => 'cpa', 'Cpa.g.sc4.155' => 'cpa', 'Cpa.g.sc6.194' => 'cpa', 'CsaV3_1G000340' => 'csa', 'CsaV3_1G001400' => 'csa', 'CsaV3_4G002220' => 'csa', 'CsaV3_4G005370' => 'csa', 'CSS0007487' => 'camsi', 'CSS0008066' => 'camsi', 'CSS0009120' => 'camsi', 'CSS0015512' => 'camsi', 'CSS0022409' => 'camsi', 'CSS0025358' => 'camsi', 'CSS0044547' => 'camsi', 'DCAR_013057' => 'dca', 'DCAR_015058' => 'dca', 'DCAR_016027' => 'dca', 'DCAR_017327' => 'dca', 'DCAR_020743' => 'dca', 'DCAR_026157' => 'dca', 'DCAR_032339' => 'dca', 'DCAR_032340' => 'dca', 'Dinv11200' => 'din', 'Dinv11201' => 'din', 'Dinv20631' => 'din', 'Dinv23182' => 'din', 'Dinv33466' => 'din', 'Dinv33583' => 'din', 'Dinv38565' => 'din', 'Duzib068G0200' => 'dzi', 'Duzib147G0132' => 'dzi', 'Duzib147G0635' => 'dzi', 'Duzib205G1670' => 'dzi', 'Duzib251G0606' => 'dzi', 'ECA232G3336' => 'eca', 'ECA232G3763' => 'eca', 'ECA232G4845' => 'eca', 'ECA234G1607' => 'eca', 'ECA246G0932' => 'eca', 'ECA247G0781' => 'eca', 'ECA247G1932' => 'eca', 'ECA247G2079' => 'eca', 'ECA247G3338' => 'eca', 'ECA247G4115' => 'eca', 'EL10Ac3g06552' => 'bvu', 'EL10Ac5g10721' => 'bvu', 'EL10Ac5g10722' => 'bvu', 'EL10Ac5g10723' => 'bvu', 'EL10Ac5g11361' => 'bvu', 'EL10Ac6g13553' => 'bvu', 'EL10As8g23872' => 'bvu', 'Eucgr.B00250' => 'egr', 'Eucgr.B00251' => 'egr', 'Eucgr.B03533' => 'egr', 'Eucgr.I02381' => 'egr', 'Eucgr.K02700' => 'egr', 'FAN02G0174' => 'fan', 'FAN02G3146' => 'fan', 'FAN04G1672' => 'fan', 'FAN04G2273' => 'fan', 'FAN05G2791' => 'fan', 'FAN05G4035' => 'fan', 'FAN07G0834' => 'fan', 'FAN08G1198' => 'fan', 'FAN09G4182' => 'fan', 'FAN12G0496' => 'fan', 'FAN13G1027' => 'fan', 'FAN13G2951' => 'fan', 'FAN14G0705' => 'fan', 'FAN14G0720' => 'fan', 'FAN17G0201' => 'fan', 'FAN17G2665' => 'fan', 'FAN18G1456' => 'fan', 'FAN18G1525' => 'fan', 'FAN18G3500' => 'fan', 'FAN28G2670' => 'fan', 'FvH4_1g12391' => 'fve', 'FvH4_4g23220' => 'fve', 'FvH4_5g08810' => 'fve', 'FvH4_5g28960' => 'fve', 'FvH4_6g42820' => 'fve', 'FvH4_6g51110' => 'fve', 'Glyma.02G051802' => 'gma', 'Glyma.04G185300' => 'gma', 'Glyma.05G202900' => 'gma', 'Glyma.08G010300' => 'gma', 'Glyma.16G131900' => 'gma', 'Glyma.17G087900' => 'gma', 'Gohir.A07G048600' => 'ghi', 'Gohir.A11G179000' => 'ghi', 'Gohir.A12G140900' => 'ghi', 'Gohir.A12G140950' => 'ghi', 'Gohir.A12G191700' => 'ghi', 'Gohir.A13G086300' => 'ghi', 'Gohir.D07G052900' => 'ghi', 'Gohir.D11G186600' => 'ghi', 'Gohir.D12G145575' => 'ghi', 'Gohir.D12G145650' => 'ghi', 'Gohir.D12G145725' => 'ghi', 'Gohir.D12G194050' => 'ghi', 'Gohir.D13G091800' => 'ghi', 'Gorai.001G055900' => 'gra', 'Gorai.007G198400' => 'gra', 'Gorai.008G157000' => 'gra', 'Gorai.008G157100' => 'gra', 'Gorai.008G208700' => 'gra', 'Gorai.010G138700' => 'gra', 'GSVIVG01000977001' => 'vvi', 'GSVIVG01007708001' => 'vvi', 'GSVIVG01008587001' => 'vvi', 'GSVIVG01018849001' => 'vvi', 'GSVIVG01032432001' => 'vvi', 'HanXRQChr02g0034131' => 'han', 'HanXRQChr02g0035981' => 'han', 'HanXRQChr02g0035991' => 'han', 'HanXRQChr05g0155611' => 'han', 'HanXRQChr05g0155621' => 'han', 'HanXRQChr08g0236501' => 'han', 'HanXRQChr09g0261321' => 'han', 'HanXRQChr09g0272081' => 'han', 'HanXRQChr10g0310741' => 'han', 'HanXRQChr11g0325591' => 'han', 'HanXRQChr12g0385691' => 'han', 'HanXRQChr13g0387801' => 'han', 'HanXRQChr15g0463011' => 'han', 'Haze_03826' => 'cav', 'Haze_03827' => 'cav', 'Haze_07183' => 'cav', 'Haze_07537' => 'cav', 'Haze_07539' => 'cav', 'Haze_12461' => 'cav', 'Haze_16115' => 'cav', 'Haze_16808' => 'cav', 'Haze_18531' => 'cav', 'Hma1.2p1_0046F.1_g026700' => 'hma', 'Hma1.2p1_0046F.1_g026710' => 'hma', 'Hma1.2p1_0168F.1_g074340' => 'hma', 'Hma1.2p1_0266F.1_g107030' => 'hma', 'Hma1.2p1_0266F.1_g107060' => 'hma', 'Hma1.2p1_0275F.1_g110510' => 'hma', 'Hma1.2p1_0592F.1_g185490' => 'hma', 'Hma1.2p1_0592F.1_g185500' => 'hma', 'Hma1.2p1_0592F.1_g185510' => 'hma', 'Hma1.2p1_0592F.1_g185520' => 'hma', 'Hma1.2p1_0592F.1_g185530' => 'hma', 'Hma1.2p1_0818F.1_g223450' => 'hma', 'HPP92_009708' => 'vpl', 'HPP92_009793' => 'vpl', 'HPP92_009796' => 'vpl', 'HPP92_009797' => 'vpl', 'HPP92_014940' => 'vpl', 'HPP92_014988' => 'vpl', 'Hund02463' => 'sun', 'Hund02760' => 'sun', 'Hund05071' => 'sun', 'Hund10108' => 'sun', 'Hund11204' => 'sun', 'Hund14016' => 'sun', 'Hund16464' => 'sun', 'Lalb_Chr09g0333391' => 'lal', 'Lalb_Chr11g0070461' => 'lal', 'Lalb_Chr12g0201671' => 'lal', 'Lalb_Chr13g0297161' => 'lal', 'Lj1g0002823' => 'lja', 'Lj3C1074T6' => 'lonja', 'Lj4A212T28' => 'lonja', 'Lj4g0005516' => 'lja', 'Lj4g0013705' => 'lja', 'Lj4g0027865' => 'lja', 'Lj5C92G16' => 'lonja', 'Lj5C92T12' => 'lonja', 'Lj7C596T3' => 'lonja', 'Lj9A446G59' => 'lonja', 'Lj9A482G21' => 'lonja', 'Lsat_1_v5_gn_1_28261' => 'lsa', 'Lsat_1_v5_gn_1_28281' => 'lsa', 'Lsat_1_v5_gn_1_32721' => 'lsa', 'Lsat_1_v5_gn_4_151760' => 'lsa', 'Lsat_1_v5_gn_4_2120' => 'lsa', 'Lsat_1_v5_gn_4_75761' => 'lsa', 'Lsat_1_v5_gn_5_10920' => 'lsa', 'Manes.02G099900' => 'mes', 'Manes.11G096200' => 'mes', 'Manes.12G007200' => 'mes', 'Manes.14G048300' => 'mes', 'Manes.17G114700' => 'mes', 'Mapoly0002s0070' => 'mpo', 'Mapoly0029s0099' => 'mpo', 'MBI07_g24742_MAGBIO' => 'mbi', 'MBI10_g27988_MAGBIO' => 'mbi', 'MBI11_g13057_MAGBIO' => 'mbi', 'MD02G1137200' => 'mdo', 'MD06G1137200' => 'mdo', 'MD07G1122300' => 'mdo', 'MD09G1078200' => 'mdo', 'MD13G1123700' => 'mdo', 'MD14G1151900' => 'mdo', 'MD17G1030900' => 'mdo', 'MD17G1068200' => 'mdo', 'MD17G1068600' => 'mdo', 'Medtr3g077540' => 'mtr', 'Medtr4g105530' => 'mtr', 'Medtr8g076580' => 'mtr', 'Medtr8g076590' => 'mtr', 'Medtr8g096410' => 'mtr', 'MELO3C016411.2' => 'cme', 'MELO3C017780.2' => 'cme', 'MELO3C022560.2' => 'cme', 'MELO3C026187.2' => 'cme', 'MELO3C026286.2' => 'cme', 'MELO3C032854.2' => 'cme', 'Migut.H02495' => 'egut', 'Migut.I00561' => 'egut', 'Migut.K01015' => 'egut', 'Migut.K01016' => 'egut', 'Migut.L00743' => 'egut', 'Migut.L00744' => 'egut', 'Migut.L00746' => 'egut', 'Migut.L00798' => 'egut', 'Migut.L00799' => 'egut', 'Migut.N02096' => 'egut', 'MSTRG.11259' => 'ama', 'MSTRG.23142' => 'ama', 'MSTRG.2499' => 'ama', 'Nitab4.5_0000003g0730' => 'nta', 'Nitab4.5_0000137g0020' => 'nta', 'Nitab4.5_0000721g0210' => 'nta', 'Nitab4.5_0000723g0050' => 'nta', 'Nitab4.5_0000913g0070' => 'nta', 'Nitab4.5_0001332g0040' => 'nta', 'Nitab4.5_0001771g0050' => 'nta', 'Nitab4.5_0001918g0050' => 'nta', 'Nitab4.5_0002686g0030' => 'nta', 'Nitab4.5_0003156g0020' => 'nta', 'Nitab4.5_0003383g0040' => 'nta', 'Nitab4.5_0003918g0010' => 'nta', 'Nitab4.5_0006760g0010' => 'nta', 'Nn1g05981' => 'nnu', 'Nn1g06288' => 'nnu', 'Nn3g16371' => 'nnu', 'Nn3g16786' => 'nnu', 'Nn4g22232' => 'nnu', 'Oeu005144.1' => 'oeu', 'Oeu005145.1' => 'oeu', 'Oeu011348.1' => 'oeu', 'Oeu016415.1' => 'oeu', 'Oeu023501.1' => 'oeu', 'Oeu044473.1' => 'oeu', 'Oeu048892.2' => 'oeu', 'Os01g0549200' => 'osa', 'Os02g0469300' => 'osa', 'Os04g0311100' => 'osa', 'Os06g0474900' => 'osa', 'Os10g0181700' => 'osa', 'Os11g0454800' => 'osa', 'Peaxi162Scf00037g00714' => 'pax', 'Peaxi162Scf00084g01217' => 'pax', 'Peaxi162Scf00257g00217' => 'pax', 'Peaxi162Scf00516g00215' => 'pax', 'Peaxi162Scf00689g00123' => 'pax', 'PGR044G2719' => 'pgr', 'PGR083G1360' => 'pgr', 'PGR102G2849' => 'pgr', 'PGR119G2534' => 'pgr', 'PGSC0003DMG400003538' => 'stu', 'PGSC0003DMG400028138' => 'stu', 'PGSC0003DMG400031732' => 'stu', 'PGSC0003DMG400038165' => 'stu', 'Phvul.002G284600' => 'pvu', 'Phvul.003G258200' => 'pvu', 'Phvul.009G176500' => 'pvu', 'Potri.003G167201' => 'ptr', 'Potri.005G118400' => 'ptr', 'Potri.012G089000' => 'ptr', 'Potri.012G102800' => 'ptr', 'Potri.015G079400' => 'ptr', 'Potri.015G100900' => 'ptr', 'Pp3c14_9810' => 'ppa', 'Pp3c15_10450' => 'ppa', 'Pp3c20_19150' => 'ppa', 'Pp3c23_12740' => 'ppa', 'Pp3c23_6310' => 'ppa', 'Pp3c24_3720' => 'ppa', 'Pp3c27_2580' => 'ppa', 'Pp3c9_8990' => 'ppa', 'PRCOL_00002854' => 'pco', 'Prupe.1G221200' => 'ppe', 'Prupe.3G289000' => 'ppe', 'Prupe.5G147000' => 'ppe', 'Prupe.6G157300' => 'ppe', 'Prupe.7G163400' => 'ppe', 'Psat0s2177g0040' => 'psa', 'Psat3g174760' => 'psa', 'Psat3g192160' => 'psa', 'Psat4g058520' => 'psa', 'Psat4g096840' => 'psa', 'Psat7g037320' => 'psa', 'PSO017G1274' => 'pso', 'PSO017G5166' => 'pso', 'PSO063G4558' => 'pso', 'PSO170G4458' => 'pso', 'PSO170G5005' => 'pso', 'PSO210G6156' => 'pso', 'PSO210G6635' => 'pso', 'PSO210G7397' => 'pso', 'PSO210G7700' => 'pso', 'PSO455G0035' => 'pso', 'PSO455G0180' => 'pso', 'PSO478G4515' => 'pso', 'PSO832G1305' => 'pso', 'PSO832G3489' => 'pso', 'QL02p075247' => 'qlo', 'QL03p051148' => 'qlo', 'QL05p010313' => 'qlo', 'QL06p034627' => 'qlo', 'QL10p001889' => 'qlo', 'QL10p010846' => 'qlo', 'RcHm_v2.0_Chr1g0350621' => 'rch', 'RcHm_v2.0_Chr1g0350641' => 'rch', 'RcHm_v2.0_Chr2g0092891' => 'rch', 'RcHm_v2.0_Chr2g0100251' => 'rch', 'RcHm_v2.0_Chr2g0158661' => 'rch', 'RcHm_v2.0_Chr2g0172741' => 'rch', 'RcHm_v2.0_Chr4g0429571' => 'rch', 'RcHm_v2.0_Chr5g0042471' => 'rch', 'RcHm_v2.0_Chr7g0189451' => 'rch', 'Rhsim08G0052000' => 'rsi', 'Rhsim08G0174400' => 'rsi', 'Rhsim08G0193200' => 'rsi', 'Rhsim10G0214800' => 'rsi', 'Rhsim10G0214900' => 'rsi', 'Rhsim10G0215000' => 'rsi', 'Rhsim12G0022900' => 'rsi', 'Rhsim12G0177500' => 'rsi', 'Rhsim12G0177700' => 'rsi', 'Sabra03G0122600' => 'sbr', 'Sabra05G0097400' => 'sbr', 'Sabra12G0064100' => 'sbr', 'Sabra15G0121300' => 'sbr', 'SalBow2G0642' => 'sbo', 'SalBow5G2667' => 'sbo', 'SalBow5G4873' => 'sbo', 'SalBow8G2395' => 'sbo', 'Sc03g0003290' => 'sci', 'Sc10g0010130' => 'sci', 'Sc22g0003650' => 'sci', 'Sed0001603' => 'sed', 'Sed0004259' => 'sed', 'Sed0006789' => 'sed', 'Sed0011838' => 'sed', 'Sed0012964' => 'sed', 'Sed0016383' => 'sed', 'Sed0019010' => 'sed', 'Sed0020188' => 'sed', 'SEGI_04702' => 'sgi', 'SEGI_17231' => 'sgi', 'SEGI_18877' => 'sgi', 'SEGI_25196' => 'sgi', 'SEGI_25515' => 'sgi', 'SEGI_28445' => 'sgi', 'SEGI_37452' => 'sgi', 'SGA_v2.0_scaffold188G40336' => 'sas', 'SGA_v2.0_scaffold228G43247' => 'sas', 'SGA_v2.0_scaffold280G46853' => 'sas', 'SGA_v2.0_scaffold34G13808' => 'sas', 'SGA_v2.0_scaffold40G15576' => 'sas', 'SGA_v2.0_scaffold611G53188' => 'sas', 'SGA_v2.0_scaffold78G25461' => 'sas', 'SGA_v2.0_scaffold90G27888' => 'sas', 'SHI08601' => 'shi', 'SHI08606' => 'shi', 'SHI17117' => 'shi', 'SHI17119' => 'shi', 'SMO118G0201' => 'smo', 'SMO169G0247' => 'smo', 'SMO176G0006' => 'smo', 'SMO176G0015' => 'smo', 'SMO202G0006' => 'smo', 'SMO240G0050' => 'smo', 'SMO286G0009' => 'smo', 'SMO338G0033' => 'smo', 'SMO356G0533' => 'smo', 'SMO364G0382' => 'smo', 'SMO367G0166' => 'smo', 'SMO367G1098' => 'smo', 'Solyc01g009920.3' => 'sly', 'Solyc01g099300.3' => 'sly', 'Solyc02g084700.3' => 'sly', 'Solyc03g097520.3' => 'sly', 'Solyc06g071580.3' => 'sly', 'Solyc10g081760.3' => 'sly', 'Sopen01g005480' => 'spe', 'Sopen01g042850' => 'spe', 'Sopen02g029370' => 'spe', 'Sopen03g028280' => 'spe', 'Sopen06g027870' => 'spe', 'Sopen10g032270' => 'spe', 'Sp5g18180' => 'spa', 'Sp6g12880' => 'spa', 'Sp6g30850' => 'spa', 'Sp7g22960' => 'spa', 'Sp7g34010' => 'spa', 'SpUn1326_0010' => 'spa', 'TAR371G0242' => 'tar', 'TAR622G0638' => 'tar', 'TAR628G1548' => 'tar', 'TAR629G1079' => 'tar', 'TAR629G3413' => 'tar', 'THA.LOC104804249' => 'tha', 'THA.LOC104808315' => 'tha', 'THA.LOC104809238' => 'tha', 'THA.LOC104825484' => 'tha', 'Thecc.01G025500' => 'tca', 'Thecc.03G015800' => 'tca', 'Thecc.03G018000' => 'tca', 'Thecc.03G134800' => 'tca', 'Thecc.04G014700' => 'tca', 'Thhalv10006991m.g' => 'esa', 'Thhalv10012707m.g' => 'esa', 'Thhalv10015739m.g' => 'esa', 'Thhalv10024553m.g' => 'esa', 'Thhalv10024673m.g' => 'esa', 'Thhalv10029187m.g' => 'esa', 'TPR.G12971' => 'tpr', 'TPR.G29396' => 'tpr', 'TPR.G33376' => 'tpr', 'TPR.G35508' => 'tpr', 'TPR.G35516' => 'tpr', 'TPR.G37317' => 'tpr', 'TPR.G37389' => 'tpr', 'TPR.G37523' => 'tpr', 'TPR.G559' => 'tpr', 'TWI14G0070' => 'twi', 'TWI14G0729' => 'twi', 'TWI18G0596' => 'twi', 'TWI39G0780' => 'twi', 'TWI39G0850' => 'twi', 'TWI73G1052' => 'twi', 'unitig_52.g17485' => 'ugi', 'unitig_61.g26355' => 'ugi', 'vmacro01040' => 'vma', 'vmacro16731' => 'vma', 'vmacro18270' => 'vma', 'vmacro19142' => 'vma', 'vmacro19407' => 'vma', 'vmacro19408' => 'vma', 'vmacro21899' => 'vma', 'vmacro21900' => 'vma', 'vmacro21901' => 'vma', 'VMungo0251G0490' => 'vmu', 'VMungo0251G1748' => 'vmu', 'VMungo1309G0421' => 'vmu', 'Zm00001eb086500' => 'zma', 'Zm00001eb150680' => 'zma', 'Zm00001eb162330' => 'zma', 'Zm00001eb203130' => 'zma', 'Zm00001eb369480' => 'zma', 'Zm00001eb382340' => 'zma', 'Zm00001eb416360' => 'zma' ), 'gf_id' => 'HOM05D000902', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000902' ), 'data_identifier' => 'HOM05D000902', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000902', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '663', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02470' => 'bna', 'A01p16260' => 'bna', 'A02p01680' => 'bna', 'A03p16600' => 'bna', 'A03p55660' => 'bna', 'A03p64160' => 'bna', 'A03p64170' => 'bna', 'A08p31900' => 'bna', 'A09p59530' => 'bna', 'A10p08230' => 'bna', 'A10p25090' => 'bna', 'Aa31LG3G7100' => 'aar', 'Aa31LG3G7110' => 'aar', 'Aa31LG6G13160' => 'aar', 'Aa31LG7G10770' => 'aar', 'Aa31LG7G3830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2723' => 'aag', 'Actinidia08045' => 'ach', 'Actinidia08888' => 'ach', 'Actinidia18333' => 'ach', 'Actinidia19334' => 'ach', 'Actinidia25552' => 'ach', 'Actinidia26089' => 'ach', 'Actinidia30615' => 'ach', 'Actinidia30616' => 'ach', 'Actinidia33083' => 'ach', 'Actinidia35762' => 'ach', 'Ah.02g110620' => 'amhyb', 'Ah.11g046390' => 'amhyb', 'AL1G31670' => 'aly', 'AL6G23730' => 'aly', 'AL7G14740' => 'aly', 'AL7G14750' => 'aly', 'AL7G14760' => 'aly', 'AL7G28220' => 'aly', 'AL8G24940' => 'aly', 'Aqoxy3G01665' => 'aox', 'Aqoxy3G02853' => 'aox', 'Aqoxy5G01513' => 'aox', 'Aqoxy5G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8SKA4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ75LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKDA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0LJZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7REX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZP4YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWX7I5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2QKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS0L9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPCD8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q161UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC7XCF' => 'arhy', 'AT1G19100' => 'ath', 'AT4G24970' => 'ath', 'AT4G36270' => 'ath', 'AT4G36280' => 'ath', 'AT4G36290' => 'ath', 'AT5G13130' => 'ath', 'AT5G50780' => 'ath', 'ATR0582G266' => 'atr', 'ATR0661G195' => 'atr', 'ATR1152G031' => 'atr', 'Atru.chr11.2382' => 'acertr', 'Atru.chr12.2337' => 'acertr', 'Atru.chr3.744' => 'acertr', 'Atru.chr6.1870' => 'acertr', 'Atru.chr9.2515' => 'acertr', 'AUR62004120' => 'cqu', 'AUR62005667' => 'cqu', 'AUR62007634' => 'cqu', 'AUR62008186' => 'cqu', 'AUR62008187' => 'cqu', 'AUR62008188' => 'cqu', 'AUR62027954' => 'cqu', 'AUR62028766' => 'cqu', 'AUR62028767' => 'cqu', 'AUR62028768' => 'cqu', 'AUR62028886' => 'cqu', 'AUR62029563' => 'cqu', 'AUR62038832' => 'cqu', 'BcaB01g04149' => 'bca', 'BcaB03g12940' => 'bca', 'BcaB03g13090' => 'bca', 'BcaB03g14466' => 'bca', 'BcaB05g24035' => 'bca', 'BcaC01g06050' => 'bca', 'BcaC04g19148' => 'bca', 'BcaC04g20761' => 'bca', 'BcaC06g32845' => 'bca', 'BcaC07g41274' => 'bca', 'BcaC09g50827' => 'bca', 'BcaNung00741' => 'bca', 'BcaNung00742' => 'bca', 'BcaNung01859' => 'bca', 'BcaNung03985' => 'bca', 'BcaNung03989' => 'bca', 'BcaNung05661' => 'bca', 'BolC1t00257H' => 'bol', 'BolC1t01956H' => 'bol', 'BolC2t06534H' => 'bol', 'BolC3t14334H' => 'bol', 'BolC5t30451H' => 'bol', 'BolC7t45880H' => 'bol', 'BolC7t46586H' => 'bol', 'BolC8t49301H' => 'bol', 'BolC8t51837H' => 'bol', 'BolC9t56822H' => 'bol', 'BolC9t59235H' => 'bol', 'BraA01t00234Z' => 'bra', 'BraA01t01563Z' => 'bra', 'BraA02t05147Z' => 'bra', 'BraA03t10947Z' => 'bra', 'BraA03t14633Z' => 'bra', 'BraA08t35112Z' => 'bra', 'BraA09t41330Z' => 'bra', 'BraA10t44570Z' => 'bra', 'C01p02670' => 'bna', 'C01p20260' => 'bna', 'C02p05890' => 'bna', 'C03p19530' => 'bna', 'C05p17470' => 'bna', 'C07p53900' => 'bna', 'C07p61630' => 'bna', 'C08p16800' => 'bna', 'C08p42810' => 'bna', 'C09p39480' => 'bna', 'C09p63980' => 'bna', 'CAN.G1001.7' => 'can', 'CAN.G1034.55' => 'can', 'CAN.G143.7' => 'can', 'CAN.G3340.1' => 'can', 'CAN.G358.19' => 'can', 'CAN.G373.2' => 'can', 'CAN.G674.16' => 'can', 'CAN.G674.17' => 'can', 'CAN.G674.18' => 'can', 'CAN.G732.2' => 'can', 'CAN.G732.3' => 'can', 'CAN.G993.39' => 'can', 'CANSAT01G2052' => 'cansat', 'CANSAT80G0070' => 'cansat', 'CANSAT80G0483' => 'cansat', 'CANSAT80G0625' => 'cansat', 'CARHR019690' => 'chi', 'CARHR080280' => 'chi', 'CARHR152750' => 'chi', 'CARHR152760' => 'chi', 'CARHR152770' => 'chi', 'CARHR200340' => 'chi', 'CARHR232370' => 'chi', 'CARHR244670' => 'chi', 'CARHR244680' => 'chi', 'CARHR257520' => 'chi', 'Carub.0001s1872' => 'cru', 'Carub.0006s1130' => 'cru', 'Carub.0007s0396' => 'cru', 'Carub.0007s0397' => 'cru', 'Carub.0007s1608' => 'cru', 'Carub.0008s1068' => 'cru', 'Carub.0008s1077' => 'cru', 'Ca_16158_v3' => 'car', 'Ca_17571_v3' => 'car', 'Ca_21936_v3' => 'car', 'Ca_22350_v3' => 'car', 'CBR_g22445' => 'cbr', 'CBR_g26290' => 'cbr', 'Cc04_g09610' => 'ccan', 'Cc04_g12280' => 'ccan', 'Cc07_g10230' => 'ccan', 'CDE02G0093' => 'cde', 'CDE02G0701' => 'cde', 'CDE04G1050' => 'cde', 'CDE05G1833' => 'cde', 'CDE05G3058' => 'cde', 'CDE05G3380' => 'cde', 'CDE06G0536' => 'cde', 'Cfa006923' => 'cfa', 'Cfa009402' => 'cfa', 'Cfa018751' => 'cfa', 'Cfa019164' => 'cfa', 'Cfa022935' => 'cfa', 'Ciclev10019081m.g' => 'ccl', 'Ciclev10025076m.g' => 'ccl', 'Ciclev10030712m.g' => 'ccl', 'Ciclev10033760m.g' => 'ccl', 'CiPaw.05G105600' => 'cil', 'CiPaw.08G136700' => 'cil', 'CiPaw.11G003900' => 'cil', 'CiPaw.11G023700' => 'cil', 'CiPaw.12G003700' => 'cil', 'ClCG06G017100' => 'cla', 'ClCG06G018110' => 'cla', 'ClCG07G008800' => 'cla', 'ClCG07G015330' => 'cla', 'COL.COLO4_13698' => 'col', 'COL.COLO4_16659' => 'col', 'COL.COLO4_21986' => 'col', 'COL.COLO4_24049' => 'col', 'COL.COLO4_29061' => 'col', 'COL.COLO4_29075' => 'col', 'COL.COLO4_30094' => 'col', 'Cpa.g.c33689' => 'cpa', 'Cpa.g.sc108.39' => 'cpa', 'Cpa.g.sc108.41' => 'cpa', 'Cpa.g.sc1163.1' => 'cpa', 'Cpa.g.sc4.155' => 'cpa', 'Cpa.g.sc6.194' => 'cpa', 'CsaV3_1G000340' => 'csa', 'CsaV3_1G001400' => 'csa', 'CsaV3_4G002220' => 'csa', 'CsaV3_4G005370' => 'csa', 'CSS0007487' => 'camsi', 'CSS0008066' => 'camsi', 'CSS0009120' => 'camsi', 'CSS0015512' => 'camsi', 'CSS0022409' => 'camsi', 'CSS0025358' => 'camsi', 'CSS0044547' => 'camsi', 'DCAR_013057' => 'dca', 'DCAR_015058' => 'dca', 'DCAR_016027' => 'dca', 'DCAR_017327' => 'dca', 'DCAR_020743' => 'dca', 'DCAR_026157' => 'dca', 'DCAR_032339' => 'dca', 'DCAR_032340' => 'dca', 'Dinv11200' => 'din', 'Dinv11201' => 'din', 'Dinv20631' => 'din', 'Dinv23182' => 'din', 'Dinv33466' => 'din', 'Dinv33583' => 'din', 'Dinv38565' => 'din', 'Duzib068G0200' => 'dzi', 'Duzib147G0132' => 'dzi', 'Duzib147G0635' => 'dzi', 'Duzib205G1670' => 'dzi', 'Duzib251G0606' => 'dzi', 'ECA232G3336' => 'eca', 'ECA232G3763' => 'eca', 'ECA232G4845' => 'eca', 'ECA234G1607' => 'eca', 'ECA246G0932' => 'eca', 'ECA247G0781' => 'eca', 'ECA247G1932' => 'eca', 'ECA247G2079' => 'eca', 'ECA247G3338' => 'eca', 'ECA247G4115' => 'eca', 'EL10Ac3g06552' => 'bvu', 'EL10Ac5g10721' => 'bvu', 'EL10Ac5g10722' => 'bvu', 'EL10Ac5g10723' => 'bvu', 'EL10Ac5g11361' => 'bvu', 'EL10Ac6g13553' => 'bvu', 'EL10As8g23872' => 'bvu', 'Eucgr.B00250' => 'egr', 'Eucgr.B00251' => 'egr', 'Eucgr.B03533' => 'egr', 'Eucgr.I02381' => 'egr', 'Eucgr.K02700' => 'egr', 'FAN02G0174' => 'fan', 'FAN02G3146' => 'fan', 'FAN04G1672' => 'fan', 'FAN04G2273' => 'fan', 'FAN05G2791' => 'fan', 'FAN05G4035' => 'fan', 'FAN07G0834' => 'fan', 'FAN08G1198' => 'fan', 'FAN09G4182' => 'fan', 'FAN12G0496' => 'fan', 'FAN13G1027' => 'fan', 'FAN13G2951' => 'fan', 'FAN14G0705' => 'fan', 'FAN14G0720' => 'fan', 'FAN17G0201' => 'fan', 'FAN17G2665' => 'fan', 'FAN18G1456' => 'fan', 'FAN18G1525' => 'fan', 'FAN18G3500' => 'fan', 'FAN28G2670' => 'fan', 'FvH4_1g12391' => 'fve', 'FvH4_4g23220' => 'fve', 'FvH4_5g08810' => 'fve', 'FvH4_5g28960' => 'fve', 'FvH4_6g42820' => 'fve', 'FvH4_6g51110' => 'fve', 'Glyma.02G051802' => 'gma', 'Glyma.04G185300' => 'gma', 'Glyma.05G202900' => 'gma', 'Glyma.08G010300' => 'gma', 'Glyma.16G131900' => 'gma', 'Glyma.17G087900' => 'gma', 'Gohir.A07G048600' => 'ghi', 'Gohir.A11G179000' => 'ghi', 'Gohir.A12G140900' => 'ghi', 'Gohir.A12G140950' => 'ghi', 'Gohir.A12G191700' => 'ghi', 'Gohir.A13G086300' => 'ghi', 'Gohir.D07G052900' => 'ghi', 'Gohir.D11G186600' => 'ghi', 'Gohir.D12G145575' => 'ghi', 'Gohir.D12G145650' => 'ghi', 'Gohir.D12G145725' => 'ghi', 'Gohir.D12G194050' => 'ghi', 'Gohir.D13G091800' => 'ghi', 'Gorai.001G055900' => 'gra', 'Gorai.007G198400' => 'gra', 'Gorai.008G157000' => 'gra', 'Gorai.008G157100' => 'gra', 'Gorai.008G208700' => 'gra', 'Gorai.010G138700' => 'gra', 'GSVIVG01000977001' => 'vvi', 'GSVIVG01007708001' => 'vvi', 'GSVIVG01008587001' => 'vvi', 'GSVIVG01018849001' => 'vvi', 'GSVIVG01032432001' => 'vvi', 'HanXRQChr02g0034131' => 'han', 'HanXRQChr02g0035981' => 'han', 'HanXRQChr02g0035991' => 'han', 'HanXRQChr05g0155611' => 'han', 'HanXRQChr05g0155621' => 'han', 'HanXRQChr08g0236501' => 'han', 'HanXRQChr09g0261321' => 'han', 'HanXRQChr09g0272081' => 'han', 'HanXRQChr10g0310741' => 'han', 'HanXRQChr11g0325591' => 'han', 'HanXRQChr12g0385691' => 'han', 'HanXRQChr13g0387801' => 'han', 'HanXRQChr15g0463011' => 'han', 'Haze_03826' => 'cav', 'Haze_03827' => 'cav', 'Haze_07183' => 'cav', 'Haze_07537' => 'cav', 'Haze_07539' => 'cav', 'Haze_12461' => 'cav', 'Haze_16115' => 'cav', 'Haze_16808' => 'cav', 'Haze_18531' => 'cav', 'Hma1.2p1_0046F.1_g026700' => 'hma', 'Hma1.2p1_0046F.1_g026710' => 'hma', 'Hma1.2p1_0168F.1_g074340' => 'hma', 'Hma1.2p1_0266F.1_g107030' => 'hma', 'Hma1.2p1_0266F.1_g107060' => 'hma', 'Hma1.2p1_0275F.1_g110510' => 'hma', 'Hma1.2p1_0592F.1_g185490' => 'hma', 'Hma1.2p1_0592F.1_g185500' => 'hma', 'Hma1.2p1_0592F.1_g185510' => 'hma', 'Hma1.2p1_0592F.1_g185520' => 'hma', 'Hma1.2p1_0592F.1_g185530' => 'hma', 'Hma1.2p1_0818F.1_g223450' => 'hma', 'HPP92_009708' => 'vpl', 'HPP92_009793' => 'vpl', 'HPP92_009796' => 'vpl', 'HPP92_009797' => 'vpl', 'HPP92_014940' => 'vpl', 'HPP92_014988' => 'vpl', 'Hund02463' => 'sun', 'Hund02760' => 'sun', 'Hund05071' => 'sun', 'Hund10108' => 'sun', 'Hund11204' => 'sun', 'Hund14016' => 'sun', 'Hund16464' => 'sun', 'Lalb_Chr09g0333391' => 'lal', 'Lalb_Chr11g0070461' => 'lal', 'Lalb_Chr12g0201671' => 'lal', 'Lalb_Chr13g0297161' => 'lal', 'Lj1g0002823' => 'lja', 'Lj3C1074T6' => 'lonja', 'Lj4A212T28' => 'lonja', 'Lj4g0005516' => 'lja', 'Lj4g0013705' => 'lja', 'Lj4g0027865' => 'lja', 'Lj5C92G16' => 'lonja', 'Lj5C92T12' => 'lonja', 'Lj7C596T3' => 'lonja', 'Lj9A446G59' => 'lonja', 'Lj9A482G21' => 'lonja', 'Lsat_1_v5_gn_1_28261' => 'lsa', 'Lsat_1_v5_gn_1_28281' => 'lsa', 'Lsat_1_v5_gn_1_32721' => 'lsa', 'Lsat_1_v5_gn_4_151760' => 'lsa', 'Lsat_1_v5_gn_4_2120' => 'lsa', 'Lsat_1_v5_gn_4_75761' => 'lsa', 'Lsat_1_v5_gn_5_10920' => 'lsa', 'Manes.02G099900' => 'mes', 'Manes.11G096200' => 'mes', 'Manes.12G007200' => 'mes', 'Manes.14G048300' => 'mes', 'Manes.17G114700' => 'mes', 'Mapoly0002s0070' => 'mpo', 'Mapoly0029s0099' => 'mpo', 'MBI07_g24742_MAGBIO' => 'mbi', 'MBI10_g27988_MAGBIO' => 'mbi', 'MBI11_g13057_MAGBIO' => 'mbi', 'MD02G1137200' => 'mdo', 'MD06G1137200' => 'mdo', 'MD07G1122300' => 'mdo', 'MD09G1078200' => 'mdo', 'MD13G1123700' => 'mdo', 'MD14G1151900' => 'mdo', 'MD17G1030900' => 'mdo', 'MD17G1068200' => 'mdo', 'MD17G1068600' => 'mdo', 'Medtr3g077540' => 'mtr', 'Medtr4g105530' => 'mtr', 'Medtr8g076580' => 'mtr', 'Medtr8g076590' => 'mtr', 'Medtr8g096410' => 'mtr', 'MELO3C016411.2' => 'cme', 'MELO3C017780.2' => 'cme', 'MELO3C022560.2' => 'cme', 'MELO3C026187.2' => 'cme', 'MELO3C026286.2' => 'cme', 'MELO3C032854.2' => 'cme', 'Migut.H02495' => 'egut', 'Migut.I00561' => 'egut', 'Migut.K01015' => 'egut', 'Migut.K01016' => 'egut', 'Migut.L00743' => 'egut', 'Migut.L00744' => 'egut', 'Migut.L00746' => 'egut', 'Migut.L00798' => 'egut', 'Migut.L00799' => 'egut', 'Migut.N02096' => 'egut', 'MSTRG.11259' => 'ama', 'MSTRG.23142' => 'ama', 'MSTRG.2499' => 'ama', 'Nitab4.5_0000003g0730' => 'nta', 'Nitab4.5_0000137g0020' => 'nta', 'Nitab4.5_0000721g0210' => 'nta', 'Nitab4.5_0000723g0050' => 'nta', 'Nitab4.5_0000913g0070' => 'nta', 'Nitab4.5_0001332g0040' => 'nta', 'Nitab4.5_0001771g0050' => 'nta', 'Nitab4.5_0001918g0050' => 'nta', 'Nitab4.5_0002686g0030' => 'nta', 'Nitab4.5_0003156g0020' => 'nta', 'Nitab4.5_0003383g0040' => 'nta', 'Nitab4.5_0003918g0010' => 'nta', 'Nitab4.5_0006760g0010' => 'nta', 'Nn1g05981' => 'nnu', 'Nn1g06288' => 'nnu', 'Nn3g16371' => 'nnu', 'Nn3g16786' => 'nnu', 'Nn4g22232' => 'nnu', 'Oeu005144.1' => 'oeu', 'Oeu005145.1' => 'oeu', 'Oeu011348.1' => 'oeu', 'Oeu016415.1' => 'oeu', 'Oeu023501.1' => 'oeu', 'Oeu044473.1' => 'oeu', 'Oeu048892.2' => 'oeu', 'Os01g0549200' => 'osa', 'Os02g0469300' => 'osa', 'Os04g0311100' => 'osa', 'Os06g0474900' => 'osa', 'Os10g0181700' => 'osa', 'Os11g0454800' => 'osa', 'Peaxi162Scf00037g00714' => 'pax', 'Peaxi162Scf00084g01217' => 'pax', 'Peaxi162Scf00257g00217' => 'pax', 'Peaxi162Scf00516g00215' => 'pax', 'Peaxi162Scf00689g00123' => 'pax', 'PGR044G2719' => 'pgr', 'PGR083G1360' => 'pgr', 'PGR102G2849' => 'pgr', 'PGR119G2534' => 'pgr', 'PGSC0003DMG400003538' => 'stu', 'PGSC0003DMG400028138' => 'stu', 'PGSC0003DMG400031732' => 'stu', 'PGSC0003DMG400038165' => 'stu', 'Phvul.002G284600' => 'pvu', 'Phvul.003G258200' => 'pvu', 'Phvul.009G176500' => 'pvu', 'Potri.003G167201' => 'ptr', 'Potri.005G118400' => 'ptr', 'Potri.012G089000' => 'ptr', 'Potri.012G102800' => 'ptr', 'Potri.015G079400' => 'ptr', 'Potri.015G100900' => 'ptr', 'Pp3c14_9810' => 'ppa', 'Pp3c15_10450' => 'ppa', 'Pp3c20_19150' => 'ppa', 'Pp3c23_12740' => 'ppa', 'Pp3c23_6310' => 'ppa', 'Pp3c24_3720' => 'ppa', 'Pp3c27_2580' => 'ppa', 'Pp3c9_8990' => 'ppa', 'PRCOL_00002854' => 'pco', 'Prupe.1G221200' => 'ppe', 'Prupe.3G289000' => 'ppe', 'Prupe.5G147000' => 'ppe', 'Prupe.6G157300' => 'ppe', 'Prupe.7G163400' => 'ppe', 'Psat0s2177g0040' => 'psa', 'Psat3g174760' => 'psa', 'Psat3g192160' => 'psa', 'Psat4g058520' => 'psa', 'Psat4g096840' => 'psa', 'Psat7g037320' => 'psa', 'PSO017G1274' => 'pso', 'PSO017G5166' => 'pso', 'PSO063G4558' => 'pso', 'PSO170G4458' => 'pso', 'PSO170G5005' => 'pso', 'PSO210G6156' => 'pso', 'PSO210G6635' => 'pso', 'PSO210G7397' => 'pso', 'PSO210G7700' => 'pso', 'PSO455G0035' => 'pso', 'PSO455G0180' => 'pso', 'PSO478G4515' => 'pso', 'PSO832G1305' => 'pso', 'PSO832G3489' => 'pso', 'QL02p075247' => 'qlo', 'QL03p051148' => 'qlo', 'QL05p010313' => 'qlo', 'QL06p034627' => 'qlo', 'QL10p001889' => 'qlo', 'QL10p010846' => 'qlo', 'RcHm_v2.0_Chr1g0350621' => 'rch', 'RcHm_v2.0_Chr1g0350641' => 'rch', 'RcHm_v2.0_Chr2g0092891' => 'rch', 'RcHm_v2.0_Chr2g0100251' => 'rch', 'RcHm_v2.0_Chr2g0158661' => 'rch', 'RcHm_v2.0_Chr2g0172741' => 'rch', 'RcHm_v2.0_Chr4g0429571' => 'rch', 'RcHm_v2.0_Chr5g0042471' => 'rch', 'RcHm_v2.0_Chr7g0189451' => 'rch', 'Rhsim08G0052000' => 'rsi', 'Rhsim08G0174400' => 'rsi', 'Rhsim08G0193200' => 'rsi', 'Rhsim10G0214800' => 'rsi', 'Rhsim10G0214900' => 'rsi', 'Rhsim10G0215000' => 'rsi', 'Rhsim12G0022900' => 'rsi', 'Rhsim12G0177500' => 'rsi', 'Rhsim12G0177700' => 'rsi', 'Sabra03G0122600' => 'sbr', 'Sabra05G0097400' => 'sbr', 'Sabra12G0064100' => 'sbr', 'Sabra15G0121300' => 'sbr', 'SalBow2G0642' => 'sbo', 'SalBow5G2667' => 'sbo', 'SalBow5G4873' => 'sbo', 'SalBow8G2395' => 'sbo', 'Sc03g0003290' => 'sci', 'Sc10g0010130' => 'sci', 'Sc22g0003650' => 'sci', 'Sed0001603' => 'sed', 'Sed0004259' => 'sed', 'Sed0006789' => 'sed', 'Sed0011838' => 'sed', 'Sed0012964' => 'sed', 'Sed0016383' => 'sed', 'Sed0019010' => 'sed', 'Sed0020188' => 'sed', 'SEGI_04702' => 'sgi', 'SEGI_17231' => 'sgi', 'SEGI_18877' => 'sgi', 'SEGI_25196' => 'sgi', 'SEGI_25515' => 'sgi', 'SEGI_28445' => 'sgi', 'SEGI_37452' => 'sgi', 'SGA_v2.0_scaffold188G40336' => 'sas', 'SGA_v2.0_scaffold228G43247' => 'sas', 'SGA_v2.0_scaffold280G46853' => 'sas', 'SGA_v2.0_scaffold34G13808' => 'sas', 'SGA_v2.0_scaffold40G15576' => 'sas', 'SGA_v2.0_scaffold611G53188' => 'sas', 'SGA_v2.0_scaffold78G25461' => 'sas', 'SGA_v2.0_scaffold90G27888' => 'sas', 'SHI08601' => 'shi', 'SHI08606' => 'shi', 'SHI17117' => 'shi', 'SHI17119' => 'shi', 'SMO118G0201' => 'smo', 'SMO169G0247' => 'smo', 'SMO176G0006' => 'smo', 'SMO176G0015' => 'smo', 'SMO202G0006' => 'smo', 'SMO240G0050' => 'smo', 'SMO286G0009' => 'smo', 'SMO338G0033' => 'smo', 'SMO356G0533' => 'smo', 'SMO364G0382' => 'smo', 'SMO367G0166' => 'smo', 'SMO367G1098' => 'smo', 'Solyc01g009920.3' => 'sly', 'Solyc01g099300.3' => 'sly', 'Solyc02g084700.3' => 'sly', 'Solyc03g097520.3' => 'sly', 'Solyc06g071580.3' => 'sly', 'Solyc10g081760.3' => 'sly', 'Sopen01g005480' => 'spe', 'Sopen01g042850' => 'spe', 'Sopen02g029370' => 'spe', 'Sopen03g028280' => 'spe', 'Sopen06g027870' => 'spe', 'Sopen10g032270' => 'spe', 'Sp5g18180' => 'spa', 'Sp6g12880' => 'spa', 'Sp6g30850' => 'spa', 'Sp7g22960' => 'spa', 'Sp7g34010' => 'spa', 'SpUn1326_0010' => 'spa', 'TAR371G0242' => 'tar', 'TAR622G0638' => 'tar', 'TAR628G1548' => 'tar', 'TAR629G1079' => 'tar', 'TAR629G3413' => 'tar', 'THA.LOC104804249' => 'tha', 'THA.LOC104808315' => 'tha', 'THA.LOC104809238' => 'tha', 'THA.LOC104825484' => 'tha', 'Thecc.01G025500' => 'tca', 'Thecc.03G015800' => 'tca', 'Thecc.03G018000' => 'tca', 'Thecc.03G134800' => 'tca', 'Thecc.04G014700' => 'tca', 'Thhalv10006991m.g' => 'esa', 'Thhalv10012707m.g' => 'esa', 'Thhalv10015739m.g' => 'esa', 'Thhalv10024553m.g' => 'esa', 'Thhalv10024673m.g' => 'esa', 'Thhalv10029187m.g' => 'esa', 'TPR.G12971' => 'tpr', 'TPR.G29396' => 'tpr', 'TPR.G33376' => 'tpr', 'TPR.G35508' => 'tpr', 'TPR.G35516' => 'tpr', 'TPR.G37317' => 'tpr', 'TPR.G37389' => 'tpr', 'TPR.G37523' => 'tpr', 'TPR.G559' => 'tpr', 'TWI14G0070' => 'twi', 'TWI14G0729' => 'twi', 'TWI18G0596' => 'twi', 'TWI39G0780' => 'twi', 'TWI39G0850' => 'twi', 'TWI73G1052' => 'twi', 'unitig_52.g17485' => 'ugi', 'unitig_61.g26355' => 'ugi', 'vmacro01040' => 'vma', 'vmacro16731' => 'vma', 'vmacro18270' => 'vma', 'vmacro19142' => 'vma', 'vmacro19407' => 'vma', 'vmacro19408' => 'vma', 'vmacro21899' => 'vma', 'vmacro21900' => 'vma', 'vmacro21901' => 'vma', 'VMungo0251G0490' => 'vmu', 'VMungo0251G1748' => 'vmu', 'VMungo1309G0421' => 'vmu', 'Zm00001eb086500' => 'zma', 'Zm00001eb150680' => 'zma', 'Zm00001eb162330' => 'zma', 'Zm00001eb203130' => 'zma', 'Zm00001eb369480' => 'zma', 'Zm00001eb382340' => 'zma', 'Zm00001eb416360' => 'zma' ) $gf_id = 'HOM05D000902' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000902' ) $data_identifier = 'HOM05D000902' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 13, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 10, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 6, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 9, 'hma' => (int) 12, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 4, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 6, 'ppa' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 6, 'rch' => (int) 9, 'rsi' => (int) 9, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 12, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 3, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416360' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000902', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '663', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02470' => 'bna', 'A01p16260' => 'bna', 'A02p01680' => 'bna', 'A03p16600' => 'bna', 'A03p55660' => 'bna', 'A03p64160' => 'bna', 'A03p64170' => 'bna', 'A08p31900' => 'bna', 'A09p59530' => 'bna', 'A10p08230' => 'bna', 'A10p25090' => 'bna', 'Aa31LG3G7100' => 'aar', 'Aa31LG3G7110' => 'aar', 'Aa31LG6G13160' => 'aar', 'Aa31LG7G10770' => 'aar', 'Aa31LG7G3830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2723' => 'aag', 'Actinidia08045' => 'ach', 'Actinidia08888' => 'ach', 'Actinidia18333' => 'ach', 'Actinidia19334' => 'ach', 'Actinidia25552' => 'ach', 'Actinidia26089' => 'ach', 'Actinidia30615' => 'ach', 'Actinidia30616' => 'ach', 'Actinidia33083' => 'ach', 'Actinidia35762' => 'ach', 'Ah.02g110620' => 'amhyb', 'Ah.11g046390' => 'amhyb', 'AL1G31670' => 'aly', 'AL6G23730' => 'aly', 'AL7G14740' => 'aly', 'AL7G14750' => 'aly', 'AL7G14760' => 'aly', 'AL7G28220' => 'aly', 'AL8G24940' => 'aly', 'Aqoxy3G01665' => 'aox', 'Aqoxy3G02853' => 'aox', 'Aqoxy5G01513' => 'aox', 'Aqoxy5G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8SKA4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ75LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKDA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0LJZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7REX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZP4YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWX7I5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2QKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS0L9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPCD8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q161UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC7XCF' => 'arhy', 'AT1G19100' => 'ath', 'AT4G24970' => 'ath', 'AT4G36270' => 'ath', 'AT4G36280' => 'ath', 'AT4G36290' => 'ath', 'AT5G13130' => 'ath', 'AT5G50780' => 'ath', 'ATR0582G266' => 'atr', 'ATR0661G195' => 'atr', 'ATR1152G031' => 'atr', 'Atru.chr11.2382' => 'acertr', 'Atru.chr12.2337' => 'acertr', 'Atru.chr3.744' => 'acertr', 'Atru.chr6.1870' => 'acertr', 'Atru.chr9.2515' => 'acertr', 'AUR62004120' => 'cqu', 'AUR62005667' => 'cqu', 'AUR62007634' => 'cqu', 'AUR62008186' => 'cqu', 'AUR62008187' => 'cqu', 'AUR62008188' => 'cqu', 'AUR62027954' => 'cqu', 'AUR62028766' => 'cqu', 'AUR62028767' => 'cqu', 'AUR62028768' => 'cqu', 'AUR62028886' => 'cqu', 'AUR62029563' => 'cqu', 'AUR62038832' => 'cqu', 'BcaB01g04149' => 'bca', 'BcaB03g12940' => 'bca', 'BcaB03g13090' => 'bca', 'BcaB03g14466' => 'bca', 'BcaB05g24035' => 'bca', 'BcaC01g06050' => 'bca', 'BcaC04g19148' => 'bca', 'BcaC04g20761' => 'bca', 'BcaC06g32845' => 'bca', 'BcaC07g41274' => 'bca', 'BcaC09g50827' => 'bca', 'BcaNung00741' => 'bca', 'BcaNung00742' => 'bca', 'BcaNung01859' => 'bca', 'BcaNung03985' => 'bca', 'BcaNung03989' => 'bca', 'BcaNung05661' => 'bca', 'BolC1t00257H' => 'bol', 'BolC1t01956H' => 'bol', 'BolC2t06534H' => 'bol', 'BolC3t14334H' => 'bol', 'BolC5t30451H' => 'bol', 'BolC7t45880H' => 'bol', 'BolC7t46586H' => 'bol', 'BolC8t49301H' => 'bol', 'BolC8t51837H' => 'bol', 'BolC9t56822H' => 'bol', 'BolC9t59235H' => 'bol', 'BraA01t00234Z' => 'bra', 'BraA01t01563Z' => 'bra', 'BraA02t05147Z' => 'bra', 'BraA03t10947Z' => 'bra', 'BraA03t14633Z' => 'bra', 'BraA08t35112Z' => 'bra', 'BraA09t41330Z' => 'bra', 'BraA10t44570Z' => 'bra', 'C01p02670' => 'bna', 'C01p20260' => 'bna', 'C02p05890' => 'bna', 'C03p19530' => 'bna', 'C05p17470' => 'bna', 'C07p53900' => 'bna', 'C07p61630' => 'bna', 'C08p16800' => 'bna', 'C08p42810' => 'bna', 'C09p39480' => 'bna', 'C09p63980' => 'bna', 'CAN.G1001.7' => 'can', 'CAN.G1034.55' => 'can', 'CAN.G143.7' => 'can', 'CAN.G3340.1' => 'can', 'CAN.G358.19' => 'can', 'CAN.G373.2' => 'can', 'CAN.G674.16' => 'can', 'CAN.G674.17' => 'can', 'CAN.G674.18' => 'can', 'CAN.G732.2' => 'can', 'CAN.G732.3' => 'can', 'CAN.G993.39' => 'can', 'CANSAT01G2052' => 'cansat', 'CANSAT80G0070' => 'cansat', 'CANSAT80G0483' => 'cansat', 'CANSAT80G0625' => 'cansat', 'CARHR019690' => 'chi', 'CARHR080280' => 'chi', 'CARHR152750' => 'chi', 'CARHR152760' => 'chi', 'CARHR152770' => 'chi', 'CARHR200340' => 'chi', 'CARHR232370' => 'chi', 'CARHR244670' => 'chi', 'CARHR244680' => 'chi', 'CARHR257520' => 'chi', 'Carub.0001s1872' => 'cru', 'Carub.0006s1130' => 'cru', 'Carub.0007s0396' => 'cru', 'Carub.0007s0397' => 'cru', 'Carub.0007s1608' => 'cru', 'Carub.0008s1068' => 'cru', 'Carub.0008s1077' => 'cru', 'Ca_16158_v3' => 'car', 'Ca_17571_v3' => 'car', 'Ca_21936_v3' => 'car', 'Ca_22350_v3' => 'car', 'CBR_g22445' => 'cbr', 'CBR_g26290' => 'cbr', 'Cc04_g09610' => 'ccan', 'Cc04_g12280' => 'ccan', 'Cc07_g10230' => 'ccan', 'CDE02G0093' => 'cde', 'CDE02G0701' => 'cde', 'CDE04G1050' => 'cde', 'CDE05G1833' => 'cde', 'CDE05G3058' => 'cde', 'CDE05G3380' => 'cde', 'CDE06G0536' => 'cde', 'Cfa006923' => 'cfa', 'Cfa009402' => 'cfa', 'Cfa018751' => 'cfa', 'Cfa019164' => 'cfa', 'Cfa022935' => 'cfa', 'Ciclev10019081m.g' => 'ccl', 'Ciclev10025076m.g' => 'ccl', 'Ciclev10030712m.g' => 'ccl', 'Ciclev10033760m.g' => 'ccl', 'CiPaw.05G105600' => 'cil', 'CiPaw.08G136700' => 'cil', 'CiPaw.11G003900' => 'cil', 'CiPaw.11G023700' => 'cil', 'CiPaw.12G003700' => 'cil', 'ClCG06G017100' => 'cla', 'ClCG06G018110' => 'cla', 'ClCG07G008800' => 'cla', 'ClCG07G015330' => 'cla', 'COL.COLO4_13698' => 'col', 'COL.COLO4_16659' => 'col', 'COL.COLO4_21986' => 'col', 'COL.COLO4_24049' => 'col', 'COL.COLO4_29061' => 'col', 'COL.COLO4_29075' => 'col', 'COL.COLO4_30094' => 'col', 'Cpa.g.c33689' => 'cpa', 'Cpa.g.sc108.39' => 'cpa', 'Cpa.g.sc108.41' => 'cpa', 'Cpa.g.sc1163.1' => 'cpa', 'Cpa.g.sc4.155' => 'cpa', 'Cpa.g.sc6.194' => 'cpa', 'CsaV3_1G000340' => 'csa', 'CsaV3_1G001400' => 'csa', 'CsaV3_4G002220' => 'csa', 'CsaV3_4G005370' => 'csa', 'CSS0007487' => 'camsi', 'CSS0008066' => 'camsi', 'CSS0009120' => 'camsi', 'CSS0015512' => 'camsi', 'CSS0022409' => 'camsi', 'CSS0025358' => 'camsi', 'CSS0044547' => 'camsi', 'DCAR_013057' => 'dca', 'DCAR_015058' => 'dca', 'DCAR_016027' => 'dca', 'DCAR_017327' => 'dca', 'DCAR_020743' => 'dca', 'DCAR_026157' => 'dca', 'DCAR_032339' => 'dca', 'DCAR_032340' => 'dca', 'Dinv11200' => 'din', 'Dinv11201' => 'din', 'Dinv20631' => 'din', 'Dinv23182' => 'din', 'Dinv33466' => 'din', 'Dinv33583' => 'din', 'Dinv38565' => 'din', 'Duzib068G0200' => 'dzi', 'Duzib147G0132' => 'dzi', 'Duzib147G0635' => 'dzi', 'Duzib205G1670' => 'dzi', 'Duzib251G0606' => 'dzi', 'ECA232G3336' => 'eca', 'ECA232G3763' => 'eca', 'ECA232G4845' => 'eca', 'ECA234G1607' => 'eca', 'ECA246G0932' => 'eca', 'ECA247G0781' => 'eca', 'ECA247G1932' => 'eca', 'ECA247G2079' => 'eca', 'ECA247G3338' => 'eca', 'ECA247G4115' => 'eca', 'EL10Ac3g06552' => 'bvu', 'EL10Ac5g10721' => 'bvu', 'EL10Ac5g10722' => 'bvu', 'EL10Ac5g10723' => 'bvu', 'EL10Ac5g11361' => 'bvu', 'EL10Ac6g13553' => 'bvu', 'EL10As8g23872' => 'bvu', 'Eucgr.B00250' => 'egr', 'Eucgr.B00251' => 'egr', 'Eucgr.B03533' => 'egr', 'Eucgr.I02381' => 'egr', 'Eucgr.K02700' => 'egr', 'FAN02G0174' => 'fan', 'FAN02G3146' => 'fan', 'FAN04G1672' => 'fan', 'FAN04G2273' => 'fan', 'FAN05G2791' => 'fan', 'FAN05G4035' => 'fan', 'FAN07G0834' => 'fan', 'FAN08G1198' => 'fan', 'FAN09G4182' => 'fan', 'FAN12G0496' => 'fan', 'FAN13G1027' => 'fan', 'FAN13G2951' => 'fan', 'FAN14G0705' => 'fan', 'FAN14G0720' => 'fan', 'FAN17G0201' => 'fan', 'FAN17G2665' => 'fan', 'FAN18G1456' => 'fan', 'FAN18G1525' => 'fan', 'FAN18G3500' => 'fan', 'FAN28G2670' => 'fan', 'FvH4_1g12391' => 'fve', 'FvH4_4g23220' => 'fve', 'FvH4_5g08810' => 'fve', 'FvH4_5g28960' => 'fve', 'FvH4_6g42820' => 'fve', 'FvH4_6g51110' => 'fve', 'Glyma.02G051802' => 'gma', 'Glyma.04G185300' => 'gma', 'Glyma.05G202900' => 'gma', 'Glyma.08G010300' => 'gma', 'Glyma.16G131900' => 'gma', 'Glyma.17G087900' => 'gma', 'Gohir.A07G048600' => 'ghi', 'Gohir.A11G179000' => 'ghi', 'Gohir.A12G140900' => 'ghi', 'Gohir.A12G140950' => 'ghi', 'Gohir.A12G191700' => 'ghi', 'Gohir.A13G086300' => 'ghi', 'Gohir.D07G052900' => 'ghi', 'Gohir.D11G186600' => 'ghi', 'Gohir.D12G145575' => 'ghi', 'Gohir.D12G145650' => 'ghi', 'Gohir.D12G145725' => 'ghi', 'Gohir.D12G194050' => 'ghi', 'Gohir.D13G091800' => 'ghi', 'Gorai.001G055900' => 'gra', 'Gorai.007G198400' => 'gra', 'Gorai.008G157000' => 'gra', 'Gorai.008G157100' => 'gra', 'Gorai.008G208700' => 'gra', 'Gorai.010G138700' => 'gra', 'GSVIVG01000977001' => 'vvi', 'GSVIVG01007708001' => 'vvi', 'GSVIVG01008587001' => 'vvi', 'GSVIVG01018849001' => 'vvi', 'GSVIVG01032432001' => 'vvi', 'HanXRQChr02g0034131' => 'han', 'HanXRQChr02g0035981' => 'han', 'HanXRQChr02g0035991' => 'han', 'HanXRQChr05g0155611' => 'han', 'HanXRQChr05g0155621' => 'han', 'HanXRQChr08g0236501' => 'han', 'HanXRQChr09g0261321' => 'han', 'HanXRQChr09g0272081' => 'han', 'HanXRQChr10g0310741' => 'han', 'HanXRQChr11g0325591' => 'han', 'HanXRQChr12g0385691' => 'han', 'HanXRQChr13g0387801' => 'han', 'HanXRQChr15g0463011' => 'han', 'Haze_03826' => 'cav', 'Haze_03827' => 'cav', 'Haze_07183' => 'cav', 'Haze_07537' => 'cav', 'Haze_07539' => 'cav', 'Haze_12461' => 'cav', 'Haze_16115' => 'cav', 'Haze_16808' => 'cav', 'Haze_18531' => 'cav', 'Hma1.2p1_0046F.1_g026700' => 'hma', 'Hma1.2p1_0046F.1_g026710' => 'hma', 'Hma1.2p1_0168F.1_g074340' => 'hma', 'Hma1.2p1_0266F.1_g107030' => 'hma', 'Hma1.2p1_0266F.1_g107060' => 'hma', 'Hma1.2p1_0275F.1_g110510' => 'hma', 'Hma1.2p1_0592F.1_g185490' => 'hma', 'Hma1.2p1_0592F.1_g185500' => 'hma', 'Hma1.2p1_0592F.1_g185510' => 'hma', 'Hma1.2p1_0592F.1_g185520' => 'hma', 'Hma1.2p1_0592F.1_g185530' => 'hma', 'Hma1.2p1_0818F.1_g223450' => 'hma', 'HPP92_009708' => 'vpl', 'HPP92_009793' => 'vpl', 'HPP92_009796' => 'vpl', 'HPP92_009797' => 'vpl', 'HPP92_014940' => 'vpl', 'HPP92_014988' => 'vpl', 'Hund02463' => 'sun', 'Hund02760' => 'sun', 'Hund05071' => 'sun', 'Hund10108' => 'sun', 'Hund11204' => 'sun', 'Hund14016' => 'sun', 'Hund16464' => 'sun', 'Lalb_Chr09g0333391' => 'lal', 'Lalb_Chr11g0070461' => 'lal', 'Lalb_Chr12g0201671' => 'lal', 'Lalb_Chr13g0297161' => 'lal', 'Lj1g0002823' => 'lja', 'Lj3C1074T6' => 'lonja', 'Lj4A212T28' => 'lonja', 'Lj4g0005516' => 'lja', 'Lj4g0013705' => 'lja', 'Lj4g0027865' => 'lja', 'Lj5C92G16' => 'lonja', 'Lj5C92T12' => 'lonja', 'Lj7C596T3' => 'lonja', 'Lj9A446G59' => 'lonja', 'Lj9A482G21' => 'lonja', 'Lsat_1_v5_gn_1_28261' => 'lsa', 'Lsat_1_v5_gn_1_28281' => 'lsa', 'Lsat_1_v5_gn_1_32721' => 'lsa', 'Lsat_1_v5_gn_4_151760' => 'lsa', 'Lsat_1_v5_gn_4_2120' => 'lsa', 'Lsat_1_v5_gn_4_75761' => 'lsa', 'Lsat_1_v5_gn_5_10920' => 'lsa', 'Manes.02G099900' => 'mes', 'Manes.11G096200' => 'mes', 'Manes.12G007200' => 'mes', 'Manes.14G048300' => 'mes', 'Manes.17G114700' => 'mes', 'Mapoly0002s0070' => 'mpo', 'Mapoly0029s0099' => 'mpo', 'MBI07_g24742_MAGBIO' => 'mbi', 'MBI10_g27988_MAGBIO' => 'mbi', 'MBI11_g13057_MAGBIO' => 'mbi', 'MD02G1137200' => 'mdo', 'MD06G1137200' => 'mdo', 'MD07G1122300' => 'mdo', 'MD09G1078200' => 'mdo', 'MD13G1123700' => 'mdo', 'MD14G1151900' => 'mdo', 'MD17G1030900' => 'mdo', 'MD17G1068200' => 'mdo', 'MD17G1068600' => 'mdo', 'Medtr3g077540' => 'mtr', 'Medtr4g105530' => 'mtr', 'Medtr8g076580' => 'mtr', 'Medtr8g076590' => 'mtr', 'Medtr8g096410' => 'mtr', 'MELO3C016411.2' => 'cme', 'MELO3C017780.2' => 'cme', 'MELO3C022560.2' => 'cme', 'MELO3C026187.2' => 'cme', 'MELO3C026286.2' => 'cme', 'MELO3C032854.2' => 'cme', 'Migut.H02495' => 'egut', 'Migut.I00561' => 'egut', 'Migut.K01015' => 'egut', 'Migut.K01016' => 'egut', 'Migut.L00743' => 'egut', 'Migut.L00744' => 'egut', 'Migut.L00746' => 'egut', 'Migut.L00798' => 'egut', 'Migut.L00799' => 'egut', 'Migut.N02096' => 'egut', 'MSTRG.11259' => 'ama', 'MSTRG.23142' => 'ama', 'MSTRG.2499' => 'ama', 'Nitab4.5_0000003g0730' => 'nta', 'Nitab4.5_0000137g0020' => 'nta', 'Nitab4.5_0000721g0210' => 'nta', 'Nitab4.5_0000723g0050' => 'nta', 'Nitab4.5_0000913g0070' => 'nta', 'Nitab4.5_0001332g0040' => 'nta', 'Nitab4.5_0001771g0050' => 'nta', 'Nitab4.5_0001918g0050' => 'nta', 'Nitab4.5_0002686g0030' => 'nta', 'Nitab4.5_0003156g0020' => 'nta', 'Nitab4.5_0003383g0040' => 'nta', 'Nitab4.5_0003918g0010' => 'nta', 'Nitab4.5_0006760g0010' => 'nta', 'Nn1g05981' => 'nnu', 'Nn1g06288' => 'nnu', 'Nn3g16371' => 'nnu', 'Nn3g16786' => 'nnu', 'Nn4g22232' => 'nnu', 'Oeu005144.1' => 'oeu', 'Oeu005145.1' => 'oeu', 'Oeu011348.1' => 'oeu', 'Oeu016415.1' => 'oeu', 'Oeu023501.1' => 'oeu', 'Oeu044473.1' => 'oeu', 'Oeu048892.2' => 'oeu', 'Os01g0549200' => 'osa', 'Os02g0469300' => 'osa', 'Os04g0311100' => 'osa', 'Os06g0474900' => 'osa', 'Os10g0181700' => 'osa', 'Os11g0454800' => 'osa', 'Peaxi162Scf00037g00714' => 'pax', 'Peaxi162Scf00084g01217' => 'pax', 'Peaxi162Scf00257g00217' => 'pax', 'Peaxi162Scf00516g00215' => 'pax', 'Peaxi162Scf00689g00123' => 'pax', 'PGR044G2719' => 'pgr', 'PGR083G1360' => 'pgr', 'PGR102G2849' => 'pgr', 'PGR119G2534' => 'pgr', 'PGSC0003DMG400003538' => 'stu', 'PGSC0003DMG400028138' => 'stu', 'PGSC0003DMG400031732' => 'stu', 'PGSC0003DMG400038165' => 'stu', 'Phvul.002G284600' => 'pvu', 'Phvul.003G258200' => 'pvu', 'Phvul.009G176500' => 'pvu', 'Potri.003G167201' => 'ptr', 'Potri.005G118400' => 'ptr', 'Potri.012G089000' => 'ptr', 'Potri.012G102800' => 'ptr', 'Potri.015G079400' => 'ptr', 'Potri.015G100900' => 'ptr', 'Pp3c14_9810' => 'ppa', 'Pp3c15_10450' => 'ppa', 'Pp3c20_19150' => 'ppa', 'Pp3c23_12740' => 'ppa', 'Pp3c23_6310' => 'ppa', 'Pp3c24_3720' => 'ppa', 'Pp3c27_2580' => 'ppa', 'Pp3c9_8990' => 'ppa', 'PRCOL_00002854' => 'pco', 'Prupe.1G221200' => 'ppe', 'Prupe.3G289000' => 'ppe', 'Prupe.5G147000' => 'ppe', 'Prupe.6G157300' => 'ppe', 'Prupe.7G163400' => 'ppe', 'Psat0s2177g0040' => 'psa', 'Psat3g174760' => 'psa', 'Psat3g192160' => 'psa', 'Psat4g058520' => 'psa', 'Psat4g096840' => 'psa', 'Psat7g037320' => 'psa', 'PSO017G1274' => 'pso', 'PSO017G5166' => 'pso', 'PSO063G4558' => 'pso', 'PSO170G4458' => 'pso', 'PSO170G5005' => 'pso', 'PSO210G6156' => 'pso', 'PSO210G6635' => 'pso', 'PSO210G7397' => 'pso', 'PSO210G7700' => 'pso', 'PSO455G0035' => 'pso', 'PSO455G0180' => 'pso', 'PSO478G4515' => 'pso', 'PSO832G1305' => 'pso', 'PSO832G3489' => 'pso', 'QL02p075247' => 'qlo', 'QL03p051148' => 'qlo', 'QL05p010313' => 'qlo', 'QL06p034627' => 'qlo', 'QL10p001889' => 'qlo', 'QL10p010846' => 'qlo', 'RcHm_v2.0_Chr1g0350621' => 'rch', 'RcHm_v2.0_Chr1g0350641' => 'rch', 'RcHm_v2.0_Chr2g0092891' => 'rch', 'RcHm_v2.0_Chr2g0100251' => 'rch', 'RcHm_v2.0_Chr2g0158661' => 'rch', 'RcHm_v2.0_Chr2g0172741' => 'rch', 'RcHm_v2.0_Chr4g0429571' => 'rch', 'RcHm_v2.0_Chr5g0042471' => 'rch', 'RcHm_v2.0_Chr7g0189451' => 'rch', 'Rhsim08G0052000' => 'rsi', 'Rhsim08G0174400' => 'rsi', 'Rhsim08G0193200' => 'rsi', 'Rhsim10G0214800' => 'rsi', 'Rhsim10G0214900' => 'rsi', 'Rhsim10G0215000' => 'rsi', 'Rhsim12G0022900' => 'rsi', 'Rhsim12G0177500' => 'rsi', 'Rhsim12G0177700' => 'rsi', 'Sabra03G0122600' => 'sbr', 'Sabra05G0097400' => 'sbr', 'Sabra12G0064100' => 'sbr', 'Sabra15G0121300' => 'sbr', 'SalBow2G0642' => 'sbo', 'SalBow5G2667' => 'sbo', 'SalBow5G4873' => 'sbo', 'SalBow8G2395' => 'sbo', 'Sc03g0003290' => 'sci', 'Sc10g0010130' => 'sci', 'Sc22g0003650' => 'sci', 'Sed0001603' => 'sed', 'Sed0004259' => 'sed', 'Sed0006789' => 'sed', 'Sed0011838' => 'sed', 'Sed0012964' => 'sed', 'Sed0016383' => 'sed', 'Sed0019010' => 'sed', 'Sed0020188' => 'sed', 'SEGI_04702' => 'sgi', 'SEGI_17231' => 'sgi', 'SEGI_18877' => 'sgi', 'SEGI_25196' => 'sgi', 'SEGI_25515' => 'sgi', 'SEGI_28445' => 'sgi', 'SEGI_37452' => 'sgi', 'SGA_v2.0_scaffold188G40336' => 'sas', 'SGA_v2.0_scaffold228G43247' => 'sas', 'SGA_v2.0_scaffold280G46853' => 'sas', 'SGA_v2.0_scaffold34G13808' => 'sas', 'SGA_v2.0_scaffold40G15576' => 'sas', 'SGA_v2.0_scaffold611G53188' => 'sas', 'SGA_v2.0_scaffold78G25461' => 'sas', 'SGA_v2.0_scaffold90G27888' => 'sas', 'SHI08601' => 'shi', 'SHI08606' => 'shi', 'SHI17117' => 'shi', 'SHI17119' => 'shi', 'SMO118G0201' => 'smo', 'SMO169G0247' => 'smo', 'SMO176G0006' => 'smo', 'SMO176G0015' => 'smo', 'SMO202G0006' => 'smo', 'SMO240G0050' => 'smo', 'SMO286G0009' => 'smo', 'SMO338G0033' => 'smo', 'SMO356G0533' => 'smo', 'SMO364G0382' => 'smo', 'SMO367G0166' => 'smo', 'SMO367G1098' => 'smo', 'Solyc01g009920.3' => 'sly', 'Solyc01g099300.3' => 'sly', 'Solyc02g084700.3' => 'sly', 'Solyc03g097520.3' => 'sly', 'Solyc06g071580.3' => 'sly', 'Solyc10g081760.3' => 'sly', 'Sopen01g005480' => 'spe', 'Sopen01g042850' => 'spe', 'Sopen02g029370' => 'spe', 'Sopen03g028280' => 'spe', 'Sopen06g027870' => 'spe', 'Sopen10g032270' => 'spe', 'Sp5g18180' => 'spa', 'Sp6g12880' => 'spa', 'Sp6g30850' => 'spa', 'Sp7g22960' => 'spa', 'Sp7g34010' => 'spa', 'SpUn1326_0010' => 'spa', 'TAR371G0242' => 'tar', 'TAR622G0638' => 'tar', 'TAR628G1548' => 'tar', 'TAR629G1079' => 'tar', 'TAR629G3413' => 'tar', 'THA.LOC104804249' => 'tha', 'THA.LOC104808315' => 'tha', 'THA.LOC104809238' => 'tha', 'THA.LOC104825484' => 'tha', 'Thecc.01G025500' => 'tca', 'Thecc.03G015800' => 'tca', 'Thecc.03G018000' => 'tca', 'Thecc.03G134800' => 'tca', 'Thecc.04G014700' => 'tca', 'Thhalv10006991m.g' => 'esa', 'Thhalv10012707m.g' => 'esa', 'Thhalv10015739m.g' => 'esa', 'Thhalv10024553m.g' => 'esa', 'Thhalv10024673m.g' => 'esa', 'Thhalv10029187m.g' => 'esa', 'TPR.G12971' => 'tpr', 'TPR.G29396' => 'tpr', 'TPR.G33376' => 'tpr', 'TPR.G35508' => 'tpr', 'TPR.G35516' => 'tpr', 'TPR.G37317' => 'tpr', 'TPR.G37389' => 'tpr', 'TPR.G37523' => 'tpr', 'TPR.G559' => 'tpr', 'TWI14G0070' => 'twi', 'TWI14G0729' => 'twi', 'TWI18G0596' => 'twi', 'TWI39G0780' => 'twi', 'TWI39G0850' => 'twi', 'TWI73G1052' => 'twi', 'unitig_52.g17485' => 'ugi', 'unitig_61.g26355' => 'ugi', 'vmacro01040' => 'vma', 'vmacro16731' => 'vma', 'vmacro18270' => 'vma', 'vmacro19142' => 'vma', 'vmacro19407' => 'vma', 'vmacro19408' => 'vma', 'vmacro21899' => 'vma', 'vmacro21900' => 'vma', 'vmacro21901' => 'vma', 'VMungo0251G0490' => 'vmu', 'VMungo0251G1748' => 'vmu', 'VMungo1309G0421' => 'vmu', 'Zm00001eb086500' => 'zma', 'Zm00001eb150680' => 'zma', 'Zm00001eb162330' => 'zma', 'Zm00001eb203130' => 'zma', 'Zm00001eb369480' => 'zma', 'Zm00001eb382340' => 'zma', 'Zm00001eb416360' => 'zma' ), 'gf_id' => 'HOM05D000902', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000902' ), 'data_identifier' => 'HOM05D000902', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000902', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '663', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02470' => 'bna', 'A01p16260' => 'bna', 'A02p01680' => 'bna', 'A03p16600' => 'bna', 'A03p55660' => 'bna', 'A03p64160' => 'bna', 'A03p64170' => 'bna', 'A08p31900' => 'bna', 'A09p59530' => 'bna', 'A10p08230' => 'bna', 'A10p25090' => 'bna', 'Aa31LG3G7100' => 'aar', 'Aa31LG3G7110' => 'aar', 'Aa31LG6G13160' => 'aar', 'Aa31LG7G10770' => 'aar', 'Aa31LG7G3830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2723' => 'aag', 'Actinidia08045' => 'ach', 'Actinidia08888' => 'ach', 'Actinidia18333' => 'ach', 'Actinidia19334' => 'ach', 'Actinidia25552' => 'ach', 'Actinidia26089' => 'ach', 'Actinidia30615' => 'ach', 'Actinidia30616' => 'ach', 'Actinidia33083' => 'ach', 'Actinidia35762' => 'ach', 'Ah.02g110620' => 'amhyb', 'Ah.11g046390' => 'amhyb', 'AL1G31670' => 'aly', 'AL6G23730' => 'aly', 'AL7G14740' => 'aly', 'AL7G14750' => 'aly', 'AL7G14760' => 'aly', 'AL7G28220' => 'aly', 'AL8G24940' => 'aly', 'Aqoxy3G01665' => 'aox', 'Aqoxy3G02853' => 'aox', 'Aqoxy5G01513' => 'aox', 'Aqoxy5G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8SKA4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ75LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKDA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0LJZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7REX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZP4YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWX7I5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2QKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS0L9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPCD8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q161UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC7XCF' => 'arhy', 'AT1G19100' => 'ath', 'AT4G24970' => 'ath', 'AT4G36270' => 'ath', 'AT4G36280' => 'ath', 'AT4G36290' => 'ath', 'AT5G13130' => 'ath', 'AT5G50780' => 'ath', 'ATR0582G266' => 'atr', 'ATR0661G195' => 'atr', 'ATR1152G031' => 'atr', 'Atru.chr11.2382' => 'acertr', 'Atru.chr12.2337' => 'acertr', 'Atru.chr3.744' => 'acertr', 'Atru.chr6.1870' => 'acertr', 'Atru.chr9.2515' => 'acertr', 'AUR62004120' => 'cqu', 'AUR62005667' => 'cqu', 'AUR62007634' => 'cqu', 'AUR62008186' => 'cqu', 'AUR62008187' => 'cqu', 'AUR62008188' => 'cqu', 'AUR62027954' => 'cqu', 'AUR62028766' => 'cqu', 'AUR62028767' => 'cqu', 'AUR62028768' => 'cqu', 'AUR62028886' => 'cqu', 'AUR62029563' => 'cqu', 'AUR62038832' => 'cqu', 'BcaB01g04149' => 'bca', 'BcaB03g12940' => 'bca', 'BcaB03g13090' => 'bca', 'BcaB03g14466' => 'bca', 'BcaB05g24035' => 'bca', 'BcaC01g06050' => 'bca', 'BcaC04g19148' => 'bca', 'BcaC04g20761' => 'bca', 'BcaC06g32845' => 'bca', 'BcaC07g41274' => 'bca', 'BcaC09g50827' => 'bca', 'BcaNung00741' => 'bca', 'BcaNung00742' => 'bca', 'BcaNung01859' => 'bca', 'BcaNung03985' => 'bca', 'BcaNung03989' => 'bca', 'BcaNung05661' => 'bca', 'BolC1t00257H' => 'bol', 'BolC1t01956H' => 'bol', 'BolC2t06534H' => 'bol', 'BolC3t14334H' => 'bol', 'BolC5t30451H' => 'bol', 'BolC7t45880H' => 'bol', 'BolC7t46586H' => 'bol', 'BolC8t49301H' => 'bol', 'BolC8t51837H' => 'bol', 'BolC9t56822H' => 'bol', 'BolC9t59235H' => 'bol', 'BraA01t00234Z' => 'bra', 'BraA01t01563Z' => 'bra', 'BraA02t05147Z' => 'bra', 'BraA03t10947Z' => 'bra', 'BraA03t14633Z' => 'bra', 'BraA08t35112Z' => 'bra', 'BraA09t41330Z' => 'bra', 'BraA10t44570Z' => 'bra', 'C01p02670' => 'bna', 'C01p20260' => 'bna', 'C02p05890' => 'bna', 'C03p19530' => 'bna', 'C05p17470' => 'bna', 'C07p53900' => 'bna', 'C07p61630' => 'bna', 'C08p16800' => 'bna', 'C08p42810' => 'bna', 'C09p39480' => 'bna', 'C09p63980' => 'bna', 'CAN.G1001.7' => 'can', 'CAN.G1034.55' => 'can', 'CAN.G143.7' => 'can', 'CAN.G3340.1' => 'can', 'CAN.G358.19' => 'can', 'CAN.G373.2' => 'can', 'CAN.G674.16' => 'can', 'CAN.G674.17' => 'can', 'CAN.G674.18' => 'can', 'CAN.G732.2' => 'can', 'CAN.G732.3' => 'can', 'CAN.G993.39' => 'can', 'CANSAT01G2052' => 'cansat', 'CANSAT80G0070' => 'cansat', 'CANSAT80G0483' => 'cansat', 'CANSAT80G0625' => 'cansat', 'CARHR019690' => 'chi', 'CARHR080280' => 'chi', 'CARHR152750' => 'chi', 'CARHR152760' => 'chi', 'CARHR152770' => 'chi', 'CARHR200340' => 'chi', 'CARHR232370' => 'chi', 'CARHR244670' => 'chi', 'CARHR244680' => 'chi', 'CARHR257520' => 'chi', 'Carub.0001s1872' => 'cru', 'Carub.0006s1130' => 'cru', 'Carub.0007s0396' => 'cru', 'Carub.0007s0397' => 'cru', 'Carub.0007s1608' => 'cru', 'Carub.0008s1068' => 'cru', 'Carub.0008s1077' => 'cru', 'Ca_16158_v3' => 'car', 'Ca_17571_v3' => 'car', 'Ca_21936_v3' => 'car', 'Ca_22350_v3' => 'car', 'CBR_g22445' => 'cbr', 'CBR_g26290' => 'cbr', 'Cc04_g09610' => 'ccan', 'Cc04_g12280' => 'ccan', 'Cc07_g10230' => 'ccan', 'CDE02G0093' => 'cde', 'CDE02G0701' => 'cde', 'CDE04G1050' => 'cde', 'CDE05G1833' => 'cde', 'CDE05G3058' => 'cde', 'CDE05G3380' => 'cde', 'CDE06G0536' => 'cde', 'Cfa006923' => 'cfa', 'Cfa009402' => 'cfa', 'Cfa018751' => 'cfa', 'Cfa019164' => 'cfa', 'Cfa022935' => 'cfa', 'Ciclev10019081m.g' => 'ccl', 'Ciclev10025076m.g' => 'ccl', 'Ciclev10030712m.g' => 'ccl', 'Ciclev10033760m.g' => 'ccl', 'CiPaw.05G105600' => 'cil', 'CiPaw.08G136700' => 'cil', 'CiPaw.11G003900' => 'cil', 'CiPaw.11G023700' => 'cil', 'CiPaw.12G003700' => 'cil', 'ClCG06G017100' => 'cla', 'ClCG06G018110' => 'cla', 'ClCG07G008800' => 'cla', 'ClCG07G015330' => 'cla', 'COL.COLO4_13698' => 'col', 'COL.COLO4_16659' => 'col', 'COL.COLO4_21986' => 'col', 'COL.COLO4_24049' => 'col', 'COL.COLO4_29061' => 'col', 'COL.COLO4_29075' => 'col', 'COL.COLO4_30094' => 'col', 'Cpa.g.c33689' => 'cpa', 'Cpa.g.sc108.39' => 'cpa', 'Cpa.g.sc108.41' => 'cpa', 'Cpa.g.sc1163.1' => 'cpa', 'Cpa.g.sc4.155' => 'cpa', 'Cpa.g.sc6.194' => 'cpa', 'CsaV3_1G000340' => 'csa', 'CsaV3_1G001400' => 'csa', 'CsaV3_4G002220' => 'csa', 'CsaV3_4G005370' => 'csa', 'CSS0007487' => 'camsi', 'CSS0008066' => 'camsi', 'CSS0009120' => 'camsi', 'CSS0015512' => 'camsi', 'CSS0022409' => 'camsi', 'CSS0025358' => 'camsi', 'CSS0044547' => 'camsi', 'DCAR_013057' => 'dca', 'DCAR_015058' => 'dca', 'DCAR_016027' => 'dca', 'DCAR_017327' => 'dca', 'DCAR_020743' => 'dca', 'DCAR_026157' => 'dca', 'DCAR_032339' => 'dca', 'DCAR_032340' => 'dca', 'Dinv11200' => 'din', 'Dinv11201' => 'din', 'Dinv20631' => 'din', 'Dinv23182' => 'din', 'Dinv33466' => 'din', 'Dinv33583' => 'din', 'Dinv38565' => 'din', 'Duzib068G0200' => 'dzi', 'Duzib147G0132' => 'dzi', 'Duzib147G0635' => 'dzi', 'Duzib205G1670' => 'dzi', 'Duzib251G0606' => 'dzi', 'ECA232G3336' => 'eca', 'ECA232G3763' => 'eca', 'ECA232G4845' => 'eca', 'ECA234G1607' => 'eca', 'ECA246G0932' => 'eca', 'ECA247G0781' => 'eca', 'ECA247G1932' => 'eca', 'ECA247G2079' => 'eca', 'ECA247G3338' => 'eca', 'ECA247G4115' => 'eca', 'EL10Ac3g06552' => 'bvu', 'EL10Ac5g10721' => 'bvu', 'EL10Ac5g10722' => 'bvu', 'EL10Ac5g10723' => 'bvu', 'EL10Ac5g11361' => 'bvu', 'EL10Ac6g13553' => 'bvu', 'EL10As8g23872' => 'bvu', 'Eucgr.B00250' => 'egr', 'Eucgr.B00251' => 'egr', 'Eucgr.B03533' => 'egr', 'Eucgr.I02381' => 'egr', 'Eucgr.K02700' => 'egr', 'FAN02G0174' => 'fan', 'FAN02G3146' => 'fan', 'FAN04G1672' => 'fan', 'FAN04G2273' => 'fan', 'FAN05G2791' => 'fan', 'FAN05G4035' => 'fan', 'FAN07G0834' => 'fan', 'FAN08G1198' => 'fan', 'FAN09G4182' => 'fan', 'FAN12G0496' => 'fan', 'FAN13G1027' => 'fan', 'FAN13G2951' => 'fan', 'FAN14G0705' => 'fan', 'FAN14G0720' => 'fan', 'FAN17G0201' => 'fan', 'FAN17G2665' => 'fan', 'FAN18G1456' => 'fan', 'FAN18G1525' => 'fan', 'FAN18G3500' => 'fan', 'FAN28G2670' => 'fan', 'FvH4_1g12391' => 'fve', 'FvH4_4g23220' => 'fve', 'FvH4_5g08810' => 'fve', 'FvH4_5g28960' => 'fve', 'FvH4_6g42820' => 'fve', 'FvH4_6g51110' => 'fve', 'Glyma.02G051802' => 'gma', 'Glyma.04G185300' => 'gma', 'Glyma.05G202900' => 'gma', 'Glyma.08G010300' => 'gma', 'Glyma.16G131900' => 'gma', 'Glyma.17G087900' => 'gma', 'Gohir.A07G048600' => 'ghi', 'Gohir.A11G179000' => 'ghi', 'Gohir.A12G140900' => 'ghi', 'Gohir.A12G140950' => 'ghi', 'Gohir.A12G191700' => 'ghi', 'Gohir.A13G086300' => 'ghi', 'Gohir.D07G052900' => 'ghi', 'Gohir.D11G186600' => 'ghi', 'Gohir.D12G145575' => 'ghi', 'Gohir.D12G145650' => 'ghi', 'Gohir.D12G145725' => 'ghi', 'Gohir.D12G194050' => 'ghi', 'Gohir.D13G091800' => 'ghi', 'Gorai.001G055900' => 'gra', 'Gorai.007G198400' => 'gra', 'Gorai.008G157000' => 'gra', 'Gorai.008G157100' => 'gra', 'Gorai.008G208700' => 'gra', 'Gorai.010G138700' => 'gra', 'GSVIVG01000977001' => 'vvi', 'GSVIVG01007708001' => 'vvi', 'GSVIVG01008587001' => 'vvi', 'GSVIVG01018849001' => 'vvi', 'GSVIVG01032432001' => 'vvi', 'HanXRQChr02g0034131' => 'han', 'HanXRQChr02g0035981' => 'han', 'HanXRQChr02g0035991' => 'han', 'HanXRQChr05g0155611' => 'han', 'HanXRQChr05g0155621' => 'han', 'HanXRQChr08g0236501' => 'han', 'HanXRQChr09g0261321' => 'han', 'HanXRQChr09g0272081' => 'han', 'HanXRQChr10g0310741' => 'han', 'HanXRQChr11g0325591' => 'han', 'HanXRQChr12g0385691' => 'han', 'HanXRQChr13g0387801' => 'han', 'HanXRQChr15g0463011' => 'han', 'Haze_03826' => 'cav', 'Haze_03827' => 'cav', 'Haze_07183' => 'cav', 'Haze_07537' => 'cav', 'Haze_07539' => 'cav', 'Haze_12461' => 'cav', 'Haze_16115' => 'cav', 'Haze_16808' => 'cav', 'Haze_18531' => 'cav', 'Hma1.2p1_0046F.1_g026700' => 'hma', 'Hma1.2p1_0046F.1_g026710' => 'hma', 'Hma1.2p1_0168F.1_g074340' => 'hma', 'Hma1.2p1_0266F.1_g107030' => 'hma', 'Hma1.2p1_0266F.1_g107060' => 'hma', 'Hma1.2p1_0275F.1_g110510' => 'hma', 'Hma1.2p1_0592F.1_g185490' => 'hma', 'Hma1.2p1_0592F.1_g185500' => 'hma', 'Hma1.2p1_0592F.1_g185510' => 'hma', 'Hma1.2p1_0592F.1_g185520' => 'hma', 'Hma1.2p1_0592F.1_g185530' => 'hma', 'Hma1.2p1_0818F.1_g223450' => 'hma', 'HPP92_009708' => 'vpl', 'HPP92_009793' => 'vpl', 'HPP92_009796' => 'vpl', 'HPP92_009797' => 'vpl', 'HPP92_014940' => 'vpl', 'HPP92_014988' => 'vpl', 'Hund02463' => 'sun', 'Hund02760' => 'sun', 'Hund05071' => 'sun', 'Hund10108' => 'sun', 'Hund11204' => 'sun', 'Hund14016' => 'sun', 'Hund16464' => 'sun', 'Lalb_Chr09g0333391' => 'lal', 'Lalb_Chr11g0070461' => 'lal', 'Lalb_Chr12g0201671' => 'lal', 'Lalb_Chr13g0297161' => 'lal', 'Lj1g0002823' => 'lja', 'Lj3C1074T6' => 'lonja', 'Lj4A212T28' => 'lonja', 'Lj4g0005516' => 'lja', 'Lj4g0013705' => 'lja', 'Lj4g0027865' => 'lja', 'Lj5C92G16' => 'lonja', 'Lj5C92T12' => 'lonja', 'Lj7C596T3' => 'lonja', 'Lj9A446G59' => 'lonja', 'Lj9A482G21' => 'lonja', 'Lsat_1_v5_gn_1_28261' => 'lsa', 'Lsat_1_v5_gn_1_28281' => 'lsa', 'Lsat_1_v5_gn_1_32721' => 'lsa', 'Lsat_1_v5_gn_4_151760' => 'lsa', 'Lsat_1_v5_gn_4_2120' => 'lsa', 'Lsat_1_v5_gn_4_75761' => 'lsa', 'Lsat_1_v5_gn_5_10920' => 'lsa', 'Manes.02G099900' => 'mes', 'Manes.11G096200' => 'mes', 'Manes.12G007200' => 'mes', 'Manes.14G048300' => 'mes', 'Manes.17G114700' => 'mes', 'Mapoly0002s0070' => 'mpo', 'Mapoly0029s0099' => 'mpo', 'MBI07_g24742_MAGBIO' => 'mbi', 'MBI10_g27988_MAGBIO' => 'mbi', 'MBI11_g13057_MAGBIO' => 'mbi', 'MD02G1137200' => 'mdo', 'MD06G1137200' => 'mdo', 'MD07G1122300' => 'mdo', 'MD09G1078200' => 'mdo', 'MD13G1123700' => 'mdo', 'MD14G1151900' => 'mdo', 'MD17G1030900' => 'mdo', 'MD17G1068200' => 'mdo', 'MD17G1068600' => 'mdo', 'Medtr3g077540' => 'mtr', 'Medtr4g105530' => 'mtr', 'Medtr8g076580' => 'mtr', 'Medtr8g076590' => 'mtr', 'Medtr8g096410' => 'mtr', 'MELO3C016411.2' => 'cme', 'MELO3C017780.2' => 'cme', 'MELO3C022560.2' => 'cme', 'MELO3C026187.2' => 'cme', 'MELO3C026286.2' => 'cme', 'MELO3C032854.2' => 'cme', 'Migut.H02495' => 'egut', 'Migut.I00561' => 'egut', 'Migut.K01015' => 'egut', 'Migut.K01016' => 'egut', 'Migut.L00743' => 'egut', 'Migut.L00744' => 'egut', 'Migut.L00746' => 'egut', 'Migut.L00798' => 'egut', 'Migut.L00799' => 'egut', 'Migut.N02096' => 'egut', 'MSTRG.11259' => 'ama', 'MSTRG.23142' => 'ama', 'MSTRG.2499' => 'ama', 'Nitab4.5_0000003g0730' => 'nta', 'Nitab4.5_0000137g0020' => 'nta', 'Nitab4.5_0000721g0210' => 'nta', 'Nitab4.5_0000723g0050' => 'nta', 'Nitab4.5_0000913g0070' => 'nta', 'Nitab4.5_0001332g0040' => 'nta', 'Nitab4.5_0001771g0050' => 'nta', 'Nitab4.5_0001918g0050' => 'nta', 'Nitab4.5_0002686g0030' => 'nta', 'Nitab4.5_0003156g0020' => 'nta', 'Nitab4.5_0003383g0040' => 'nta', 'Nitab4.5_0003918g0010' => 'nta', 'Nitab4.5_0006760g0010' => 'nta', 'Nn1g05981' => 'nnu', 'Nn1g06288' => 'nnu', 'Nn3g16371' => 'nnu', 'Nn3g16786' => 'nnu', 'Nn4g22232' => 'nnu', 'Oeu005144.1' => 'oeu', 'Oeu005145.1' => 'oeu', 'Oeu011348.1' => 'oeu', 'Oeu016415.1' => 'oeu', 'Oeu023501.1' => 'oeu', 'Oeu044473.1' => 'oeu', 'Oeu048892.2' => 'oeu', 'Os01g0549200' => 'osa', 'Os02g0469300' => 'osa', 'Os04g0311100' => 'osa', 'Os06g0474900' => 'osa', 'Os10g0181700' => 'osa', 'Os11g0454800' => 'osa', 'Peaxi162Scf00037g00714' => 'pax', 'Peaxi162Scf00084g01217' => 'pax', 'Peaxi162Scf00257g00217' => 'pax', 'Peaxi162Scf00516g00215' => 'pax', 'Peaxi162Scf00689g00123' => 'pax', 'PGR044G2719' => 'pgr', 'PGR083G1360' => 'pgr', 'PGR102G2849' => 'pgr', 'PGR119G2534' => 'pgr', 'PGSC0003DMG400003538' => 'stu', 'PGSC0003DMG400028138' => 'stu', 'PGSC0003DMG400031732' => 'stu', 'PGSC0003DMG400038165' => 'stu', 'Phvul.002G284600' => 'pvu', 'Phvul.003G258200' => 'pvu', 'Phvul.009G176500' => 'pvu', 'Potri.003G167201' => 'ptr', 'Potri.005G118400' => 'ptr', 'Potri.012G089000' => 'ptr', 'Potri.012G102800' => 'ptr', 'Potri.015G079400' => 'ptr', 'Potri.015G100900' => 'ptr', 'Pp3c14_9810' => 'ppa', 'Pp3c15_10450' => 'ppa', 'Pp3c20_19150' => 'ppa', 'Pp3c23_12740' => 'ppa', 'Pp3c23_6310' => 'ppa', 'Pp3c24_3720' => 'ppa', 'Pp3c27_2580' => 'ppa', 'Pp3c9_8990' => 'ppa', 'PRCOL_00002854' => 'pco', 'Prupe.1G221200' => 'ppe', 'Prupe.3G289000' => 'ppe', 'Prupe.5G147000' => 'ppe', 'Prupe.6G157300' => 'ppe', 'Prupe.7G163400' => 'ppe', 'Psat0s2177g0040' => 'psa', 'Psat3g174760' => 'psa', 'Psat3g192160' => 'psa', 'Psat4g058520' => 'psa', 'Psat4g096840' => 'psa', 'Psat7g037320' => 'psa', 'PSO017G1274' => 'pso', 'PSO017G5166' => 'pso', 'PSO063G4558' => 'pso', 'PSO170G4458' => 'pso', 'PSO170G5005' => 'pso', 'PSO210G6156' => 'pso', 'PSO210G6635' => 'pso', 'PSO210G7397' => 'pso', 'PSO210G7700' => 'pso', 'PSO455G0035' => 'pso', 'PSO455G0180' => 'pso', 'PSO478G4515' => 'pso', 'PSO832G1305' => 'pso', 'PSO832G3489' => 'pso', 'QL02p075247' => 'qlo', 'QL03p051148' => 'qlo', 'QL05p010313' => 'qlo', 'QL06p034627' => 'qlo', 'QL10p001889' => 'qlo', 'QL10p010846' => 'qlo', 'RcHm_v2.0_Chr1g0350621' => 'rch', 'RcHm_v2.0_Chr1g0350641' => 'rch', 'RcHm_v2.0_Chr2g0092891' => 'rch', 'RcHm_v2.0_Chr2g0100251' => 'rch', 'RcHm_v2.0_Chr2g0158661' => 'rch', 'RcHm_v2.0_Chr2g0172741' => 'rch', 'RcHm_v2.0_Chr4g0429571' => 'rch', 'RcHm_v2.0_Chr5g0042471' => 'rch', 'RcHm_v2.0_Chr7g0189451' => 'rch', 'Rhsim08G0052000' => 'rsi', 'Rhsim08G0174400' => 'rsi', 'Rhsim08G0193200' => 'rsi', 'Rhsim10G0214800' => 'rsi', 'Rhsim10G0214900' => 'rsi', 'Rhsim10G0215000' => 'rsi', 'Rhsim12G0022900' => 'rsi', 'Rhsim12G0177500' => 'rsi', 'Rhsim12G0177700' => 'rsi', 'Sabra03G0122600' => 'sbr', 'Sabra05G0097400' => 'sbr', 'Sabra12G0064100' => 'sbr', 'Sabra15G0121300' => 'sbr', 'SalBow2G0642' => 'sbo', 'SalBow5G2667' => 'sbo', 'SalBow5G4873' => 'sbo', 'SalBow8G2395' => 'sbo', 'Sc03g0003290' => 'sci', 'Sc10g0010130' => 'sci', 'Sc22g0003650' => 'sci', 'Sed0001603' => 'sed', 'Sed0004259' => 'sed', 'Sed0006789' => 'sed', 'Sed0011838' => 'sed', 'Sed0012964' => 'sed', 'Sed0016383' => 'sed', 'Sed0019010' => 'sed', 'Sed0020188' => 'sed', 'SEGI_04702' => 'sgi', 'SEGI_17231' => 'sgi', 'SEGI_18877' => 'sgi', 'SEGI_25196' => 'sgi', 'SEGI_25515' => 'sgi', 'SEGI_28445' => 'sgi', 'SEGI_37452' => 'sgi', 'SGA_v2.0_scaffold188G40336' => 'sas', 'SGA_v2.0_scaffold228G43247' => 'sas', 'SGA_v2.0_scaffold280G46853' => 'sas', 'SGA_v2.0_scaffold34G13808' => 'sas', 'SGA_v2.0_scaffold40G15576' => 'sas', 'SGA_v2.0_scaffold611G53188' => 'sas', 'SGA_v2.0_scaffold78G25461' => 'sas', 'SGA_v2.0_scaffold90G27888' => 'sas', 'SHI08601' => 'shi', 'SHI08606' => 'shi', 'SHI17117' => 'shi', 'SHI17119' => 'shi', 'SMO118G0201' => 'smo', 'SMO169G0247' => 'smo', 'SMO176G0006' => 'smo', 'SMO176G0015' => 'smo', 'SMO202G0006' => 'smo', 'SMO240G0050' => 'smo', 'SMO286G0009' => 'smo', 'SMO338G0033' => 'smo', 'SMO356G0533' => 'smo', 'SMO364G0382' => 'smo', 'SMO367G0166' => 'smo', 'SMO367G1098' => 'smo', 'Solyc01g009920.3' => 'sly', 'Solyc01g099300.3' => 'sly', 'Solyc02g084700.3' => 'sly', 'Solyc03g097520.3' => 'sly', 'Solyc06g071580.3' => 'sly', 'Solyc10g081760.3' => 'sly', 'Sopen01g005480' => 'spe', 'Sopen01g042850' => 'spe', 'Sopen02g029370' => 'spe', 'Sopen03g028280' => 'spe', 'Sopen06g027870' => 'spe', 'Sopen10g032270' => 'spe', 'Sp5g18180' => 'spa', 'Sp6g12880' => 'spa', 'Sp6g30850' => 'spa', 'Sp7g22960' => 'spa', 'Sp7g34010' => 'spa', 'SpUn1326_0010' => 'spa', 'TAR371G0242' => 'tar', 'TAR622G0638' => 'tar', 'TAR628G1548' => 'tar', 'TAR629G1079' => 'tar', 'TAR629G3413' => 'tar', 'THA.LOC104804249' => 'tha', 'THA.LOC104808315' => 'tha', 'THA.LOC104809238' => 'tha', 'THA.LOC104825484' => 'tha', 'Thecc.01G025500' => 'tca', 'Thecc.03G015800' => 'tca', 'Thecc.03G018000' => 'tca', 'Thecc.03G134800' => 'tca', 'Thecc.04G014700' => 'tca', 'Thhalv10006991m.g' => 'esa', 'Thhalv10012707m.g' => 'esa', 'Thhalv10015739m.g' => 'esa', 'Thhalv10024553m.g' => 'esa', 'Thhalv10024673m.g' => 'esa', 'Thhalv10029187m.g' => 'esa', 'TPR.G12971' => 'tpr', 'TPR.G29396' => 'tpr', 'TPR.G33376' => 'tpr', 'TPR.G35508' => 'tpr', 'TPR.G35516' => 'tpr', 'TPR.G37317' => 'tpr', 'TPR.G37389' => 'tpr', 'TPR.G37523' => 'tpr', 'TPR.G559' => 'tpr', 'TWI14G0070' => 'twi', 'TWI14G0729' => 'twi', 'TWI18G0596' => 'twi', 'TWI39G0780' => 'twi', 'TWI39G0850' => 'twi', 'TWI73G1052' => 'twi', 'unitig_52.g17485' => 'ugi', 'unitig_61.g26355' => 'ugi', 'vmacro01040' => 'vma', 'vmacro16731' => 'vma', 'vmacro18270' => 'vma', 'vmacro19142' => 'vma', 'vmacro19407' => 'vma', 'vmacro19408' => 'vma', 'vmacro21899' => 'vma', 'vmacro21900' => 'vma', 'vmacro21901' => 'vma', 'VMungo0251G0490' => 'vmu', 'VMungo0251G1748' => 'vmu', 'VMungo1309G0421' => 'vmu', 'Zm00001eb086500' => 'zma', 'Zm00001eb150680' => 'zma', 'Zm00001eb162330' => 'zma', 'Zm00001eb203130' => 'zma', 'Zm00001eb369480' => 'zma', 'Zm00001eb382340' => 'zma', 'Zm00001eb416360' => 'zma' ) $gf_id = 'HOM05D000902' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000902' ) $data_identifier = 'HOM05D000902' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 13, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 10, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 6, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 9, 'hma' => (int) 12, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 4, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 6, 'ppa' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 6, 'rch' => (int) 9, 'rsi' => (int) 9, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 12, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 3, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416360' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000902', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '663', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02470' => 'bna', 'A01p16260' => 'bna', 'A02p01680' => 'bna', 'A03p16600' => 'bna', 'A03p55660' => 'bna', 'A03p64160' => 'bna', 'A03p64170' => 'bna', 'A08p31900' => 'bna', 'A09p59530' => 'bna', 'A10p08230' => 'bna', 'A10p25090' => 'bna', 'Aa31LG3G7100' => 'aar', 'Aa31LG3G7110' => 'aar', 'Aa31LG6G13160' => 'aar', 'Aa31LG7G10770' => 'aar', 'Aa31LG7G3830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2723' => 'aag', 'Actinidia08045' => 'ach', 'Actinidia08888' => 'ach', 'Actinidia18333' => 'ach', 'Actinidia19334' => 'ach', 'Actinidia25552' => 'ach', 'Actinidia26089' => 'ach', 'Actinidia30615' => 'ach', 'Actinidia30616' => 'ach', 'Actinidia33083' => 'ach', 'Actinidia35762' => 'ach', 'Ah.02g110620' => 'amhyb', 'Ah.11g046390' => 'amhyb', 'AL1G31670' => 'aly', 'AL6G23730' => 'aly', 'AL7G14740' => 'aly', 'AL7G14750' => 'aly', 'AL7G14760' => 'aly', 'AL7G28220' => 'aly', 'AL8G24940' => 'aly', 'Aqoxy3G01665' => 'aox', 'Aqoxy3G02853' => 'aox', 'Aqoxy5G01513' => 'aox', 'Aqoxy5G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8SKA4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ75LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKDA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0LJZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7REX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZP4YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWX7I5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2QKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS0L9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPCD8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q161UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC7XCF' => 'arhy', 'AT1G19100' => 'ath', 'AT4G24970' => 'ath', 'AT4G36270' => 'ath', 'AT4G36280' => 'ath', 'AT4G36290' => 'ath', 'AT5G13130' => 'ath', 'AT5G50780' => 'ath', 'ATR0582G266' => 'atr', 'ATR0661G195' => 'atr', 'ATR1152G031' => 'atr', 'Atru.chr11.2382' => 'acertr', 'Atru.chr12.2337' => 'acertr', 'Atru.chr3.744' => 'acertr', 'Atru.chr6.1870' => 'acertr', 'Atru.chr9.2515' => 'acertr', 'AUR62004120' => 'cqu', 'AUR62005667' => 'cqu', 'AUR62007634' => 'cqu', 'AUR62008186' => 'cqu', 'AUR62008187' => 'cqu', 'AUR62008188' => 'cqu', 'AUR62027954' => 'cqu', 'AUR62028766' => 'cqu', 'AUR62028767' => 'cqu', 'AUR62028768' => 'cqu', 'AUR62028886' => 'cqu', 'AUR62029563' => 'cqu', 'AUR62038832' => 'cqu', 'BcaB01g04149' => 'bca', 'BcaB03g12940' => 'bca', 'BcaB03g13090' => 'bca', 'BcaB03g14466' => 'bca', 'BcaB05g24035' => 'bca', 'BcaC01g06050' => 'bca', 'BcaC04g19148' => 'bca', 'BcaC04g20761' => 'bca', 'BcaC06g32845' => 'bca', 'BcaC07g41274' => 'bca', 'BcaC09g50827' => 'bca', 'BcaNung00741' => 'bca', 'BcaNung00742' => 'bca', 'BcaNung01859' => 'bca', 'BcaNung03985' => 'bca', 'BcaNung03989' => 'bca', 'BcaNung05661' => 'bca', 'BolC1t00257H' => 'bol', 'BolC1t01956H' => 'bol', 'BolC2t06534H' => 'bol', 'BolC3t14334H' => 'bol', 'BolC5t30451H' => 'bol', 'BolC7t45880H' => 'bol', 'BolC7t46586H' => 'bol', 'BolC8t49301H' => 'bol', 'BolC8t51837H' => 'bol', 'BolC9t56822H' => 'bol', 'BolC9t59235H' => 'bol', 'BraA01t00234Z' => 'bra', 'BraA01t01563Z' => 'bra', 'BraA02t05147Z' => 'bra', 'BraA03t10947Z' => 'bra', 'BraA03t14633Z' => 'bra', 'BraA08t35112Z' => 'bra', 'BraA09t41330Z' => 'bra', 'BraA10t44570Z' => 'bra', 'C01p02670' => 'bna', 'C01p20260' => 'bna', 'C02p05890' => 'bna', 'C03p19530' => 'bna', 'C05p17470' => 'bna', 'C07p53900' => 'bna', 'C07p61630' => 'bna', 'C08p16800' => 'bna', 'C08p42810' => 'bna', 'C09p39480' => 'bna', 'C09p63980' => 'bna', 'CAN.G1001.7' => 'can', 'CAN.G1034.55' => 'can', 'CAN.G143.7' => 'can', 'CAN.G3340.1' => 'can', 'CAN.G358.19' => 'can', 'CAN.G373.2' => 'can', 'CAN.G674.16' => 'can', 'CAN.G674.17' => 'can', 'CAN.G674.18' => 'can', 'CAN.G732.2' => 'can', 'CAN.G732.3' => 'can', 'CAN.G993.39' => 'can', 'CANSAT01G2052' => 'cansat', 'CANSAT80G0070' => 'cansat', 'CANSAT80G0483' => 'cansat', 'CANSAT80G0625' => 'cansat', 'CARHR019690' => 'chi', 'CARHR080280' => 'chi', 'CARHR152750' => 'chi', 'CARHR152760' => 'chi', 'CARHR152770' => 'chi', 'CARHR200340' => 'chi', 'CARHR232370' => 'chi', 'CARHR244670' => 'chi', 'CARHR244680' => 'chi', 'CARHR257520' => 'chi', 'Carub.0001s1872' => 'cru', 'Carub.0006s1130' => 'cru', 'Carub.0007s0396' => 'cru', 'Carub.0007s0397' => 'cru', 'Carub.0007s1608' => 'cru', 'Carub.0008s1068' => 'cru', 'Carub.0008s1077' => 'cru', 'Ca_16158_v3' => 'car', 'Ca_17571_v3' => 'car', 'Ca_21936_v3' => 'car', 'Ca_22350_v3' => 'car', 'CBR_g22445' => 'cbr', 'CBR_g26290' => 'cbr', 'Cc04_g09610' => 'ccan', 'Cc04_g12280' => 'ccan', 'Cc07_g10230' => 'ccan', 'CDE02G0093' => 'cde', 'CDE02G0701' => 'cde', 'CDE04G1050' => 'cde', 'CDE05G1833' => 'cde', 'CDE05G3058' => 'cde', 'CDE05G3380' => 'cde', 'CDE06G0536' => 'cde', 'Cfa006923' => 'cfa', 'Cfa009402' => 'cfa', 'Cfa018751' => 'cfa', 'Cfa019164' => 'cfa', 'Cfa022935' => 'cfa', 'Ciclev10019081m.g' => 'ccl', 'Ciclev10025076m.g' => 'ccl', 'Ciclev10030712m.g' => 'ccl', 'Ciclev10033760m.g' => 'ccl', 'CiPaw.05G105600' => 'cil', 'CiPaw.08G136700' => 'cil', 'CiPaw.11G003900' => 'cil', 'CiPaw.11G023700' => 'cil', 'CiPaw.12G003700' => 'cil', 'ClCG06G017100' => 'cla', 'ClCG06G018110' => 'cla', 'ClCG07G008800' => 'cla', 'ClCG07G015330' => 'cla', 'COL.COLO4_13698' => 'col', 'COL.COLO4_16659' => 'col', 'COL.COLO4_21986' => 'col', 'COL.COLO4_24049' => 'col', 'COL.COLO4_29061' => 'col', 'COL.COLO4_29075' => 'col', 'COL.COLO4_30094' => 'col', 'Cpa.g.c33689' => 'cpa', 'Cpa.g.sc108.39' => 'cpa', 'Cpa.g.sc108.41' => 'cpa', 'Cpa.g.sc1163.1' => 'cpa', 'Cpa.g.sc4.155' => 'cpa', 'Cpa.g.sc6.194' => 'cpa', 'CsaV3_1G000340' => 'csa', 'CsaV3_1G001400' => 'csa', 'CsaV3_4G002220' => 'csa', 'CsaV3_4G005370' => 'csa', 'CSS0007487' => 'camsi', 'CSS0008066' => 'camsi', 'CSS0009120' => 'camsi', 'CSS0015512' => 'camsi', 'CSS0022409' => 'camsi', 'CSS0025358' => 'camsi', 'CSS0044547' => 'camsi', 'DCAR_013057' => 'dca', 'DCAR_015058' => 'dca', 'DCAR_016027' => 'dca', 'DCAR_017327' => 'dca', 'DCAR_020743' => 'dca', 'DCAR_026157' => 'dca', 'DCAR_032339' => 'dca', 'DCAR_032340' => 'dca', 'Dinv11200' => 'din', 'Dinv11201' => 'din', 'Dinv20631' => 'din', 'Dinv23182' => 'din', 'Dinv33466' => 'din', 'Dinv33583' => 'din', 'Dinv38565' => 'din', 'Duzib068G0200' => 'dzi', 'Duzib147G0132' => 'dzi', 'Duzib147G0635' => 'dzi', 'Duzib205G1670' => 'dzi', 'Duzib251G0606' => 'dzi', 'ECA232G3336' => 'eca', 'ECA232G3763' => 'eca', 'ECA232G4845' => 'eca', 'ECA234G1607' => 'eca', 'ECA246G0932' => 'eca', 'ECA247G0781' => 'eca', 'ECA247G1932' => 'eca', 'ECA247G2079' => 'eca', 'ECA247G3338' => 'eca', 'ECA247G4115' => 'eca', 'EL10Ac3g06552' => 'bvu', 'EL10Ac5g10721' => 'bvu', 'EL10Ac5g10722' => 'bvu', 'EL10Ac5g10723' => 'bvu', 'EL10Ac5g11361' => 'bvu', 'EL10Ac6g13553' => 'bvu', 'EL10As8g23872' => 'bvu', 'Eucgr.B00250' => 'egr', 'Eucgr.B00251' => 'egr', 'Eucgr.B03533' => 'egr', 'Eucgr.I02381' => 'egr', 'Eucgr.K02700' => 'egr', 'FAN02G0174' => 'fan', 'FAN02G3146' => 'fan', 'FAN04G1672' => 'fan', 'FAN04G2273' => 'fan', 'FAN05G2791' => 'fan', 'FAN05G4035' => 'fan', 'FAN07G0834' => 'fan', 'FAN08G1198' => 'fan', 'FAN09G4182' => 'fan', 'FAN12G0496' => 'fan', 'FAN13G1027' => 'fan', 'FAN13G2951' => 'fan', 'FAN14G0705' => 'fan', 'FAN14G0720' => 'fan', 'FAN17G0201' => 'fan', 'FAN17G2665' => 'fan', 'FAN18G1456' => 'fan', 'FAN18G1525' => 'fan', 'FAN18G3500' => 'fan', 'FAN28G2670' => 'fan', 'FvH4_1g12391' => 'fve', 'FvH4_4g23220' => 'fve', 'FvH4_5g08810' => 'fve', 'FvH4_5g28960' => 'fve', 'FvH4_6g42820' => 'fve', 'FvH4_6g51110' => 'fve', 'Glyma.02G051802' => 'gma', 'Glyma.04G185300' => 'gma', 'Glyma.05G202900' => 'gma', 'Glyma.08G010300' => 'gma', 'Glyma.16G131900' => 'gma', 'Glyma.17G087900' => 'gma', 'Gohir.A07G048600' => 'ghi', 'Gohir.A11G179000' => 'ghi', 'Gohir.A12G140900' => 'ghi', 'Gohir.A12G140950' => 'ghi', 'Gohir.A12G191700' => 'ghi', 'Gohir.A13G086300' => 'ghi', 'Gohir.D07G052900' => 'ghi', 'Gohir.D11G186600' => 'ghi', 'Gohir.D12G145575' => 'ghi', 'Gohir.D12G145650' => 'ghi', 'Gohir.D12G145725' => 'ghi', 'Gohir.D12G194050' => 'ghi', 'Gohir.D13G091800' => 'ghi', 'Gorai.001G055900' => 'gra', 'Gorai.007G198400' => 'gra', 'Gorai.008G157000' => 'gra', 'Gorai.008G157100' => 'gra', 'Gorai.008G208700' => 'gra', 'Gorai.010G138700' => 'gra', 'GSVIVG01000977001' => 'vvi', 'GSVIVG01007708001' => 'vvi', 'GSVIVG01008587001' => 'vvi', 'GSVIVG01018849001' => 'vvi', 'GSVIVG01032432001' => 'vvi', 'HanXRQChr02g0034131' => 'han', 'HanXRQChr02g0035981' => 'han', 'HanXRQChr02g0035991' => 'han', 'HanXRQChr05g0155611' => 'han', 'HanXRQChr05g0155621' => 'han', 'HanXRQChr08g0236501' => 'han', 'HanXRQChr09g0261321' => 'han', 'HanXRQChr09g0272081' => 'han', 'HanXRQChr10g0310741' => 'han', 'HanXRQChr11g0325591' => 'han', 'HanXRQChr12g0385691' => 'han', 'HanXRQChr13g0387801' => 'han', 'HanXRQChr15g0463011' => 'han', 'Haze_03826' => 'cav', 'Haze_03827' => 'cav', 'Haze_07183' => 'cav', 'Haze_07537' => 'cav', 'Haze_07539' => 'cav', 'Haze_12461' => 'cav', 'Haze_16115' => 'cav', 'Haze_16808' => 'cav', 'Haze_18531' => 'cav', 'Hma1.2p1_0046F.1_g026700' => 'hma', 'Hma1.2p1_0046F.1_g026710' => 'hma', 'Hma1.2p1_0168F.1_g074340' => 'hma', 'Hma1.2p1_0266F.1_g107030' => 'hma', 'Hma1.2p1_0266F.1_g107060' => 'hma', 'Hma1.2p1_0275F.1_g110510' => 'hma', 'Hma1.2p1_0592F.1_g185490' => 'hma', 'Hma1.2p1_0592F.1_g185500' => 'hma', 'Hma1.2p1_0592F.1_g185510' => 'hma', 'Hma1.2p1_0592F.1_g185520' => 'hma', 'Hma1.2p1_0592F.1_g185530' => 'hma', 'Hma1.2p1_0818F.1_g223450' => 'hma', 'HPP92_009708' => 'vpl', 'HPP92_009793' => 'vpl', 'HPP92_009796' => 'vpl', 'HPP92_009797' => 'vpl', 'HPP92_014940' => 'vpl', 'HPP92_014988' => 'vpl', 'Hund02463' => 'sun', 'Hund02760' => 'sun', 'Hund05071' => 'sun', 'Hund10108' => 'sun', 'Hund11204' => 'sun', 'Hund14016' => 'sun', 'Hund16464' => 'sun', 'Lalb_Chr09g0333391' => 'lal', 'Lalb_Chr11g0070461' => 'lal', 'Lalb_Chr12g0201671' => 'lal', 'Lalb_Chr13g0297161' => 'lal', 'Lj1g0002823' => 'lja', 'Lj3C1074T6' => 'lonja', 'Lj4A212T28' => 'lonja', 'Lj4g0005516' => 'lja', 'Lj4g0013705' => 'lja', 'Lj4g0027865' => 'lja', 'Lj5C92G16' => 'lonja', 'Lj5C92T12' => 'lonja', 'Lj7C596T3' => 'lonja', 'Lj9A446G59' => 'lonja', 'Lj9A482G21' => 'lonja', 'Lsat_1_v5_gn_1_28261' => 'lsa', 'Lsat_1_v5_gn_1_28281' => 'lsa', 'Lsat_1_v5_gn_1_32721' => 'lsa', 'Lsat_1_v5_gn_4_151760' => 'lsa', 'Lsat_1_v5_gn_4_2120' => 'lsa', 'Lsat_1_v5_gn_4_75761' => 'lsa', 'Lsat_1_v5_gn_5_10920' => 'lsa', 'Manes.02G099900' => 'mes', 'Manes.11G096200' => 'mes', 'Manes.12G007200' => 'mes', 'Manes.14G048300' => 'mes', 'Manes.17G114700' => 'mes', 'Mapoly0002s0070' => 'mpo', 'Mapoly0029s0099' => 'mpo', 'MBI07_g24742_MAGBIO' => 'mbi', 'MBI10_g27988_MAGBIO' => 'mbi', 'MBI11_g13057_MAGBIO' => 'mbi', 'MD02G1137200' => 'mdo', 'MD06G1137200' => 'mdo', 'MD07G1122300' => 'mdo', 'MD09G1078200' => 'mdo', 'MD13G1123700' => 'mdo', 'MD14G1151900' => 'mdo', 'MD17G1030900' => 'mdo', 'MD17G1068200' => 'mdo', 'MD17G1068600' => 'mdo', 'Medtr3g077540' => 'mtr', 'Medtr4g105530' => 'mtr', 'Medtr8g076580' => 'mtr', 'Medtr8g076590' => 'mtr', 'Medtr8g096410' => 'mtr', 'MELO3C016411.2' => 'cme', 'MELO3C017780.2' => 'cme', 'MELO3C022560.2' => 'cme', 'MELO3C026187.2' => 'cme', 'MELO3C026286.2' => 'cme', 'MELO3C032854.2' => 'cme', 'Migut.H02495' => 'egut', 'Migut.I00561' => 'egut', 'Migut.K01015' => 'egut', 'Migut.K01016' => 'egut', 'Migut.L00743' => 'egut', 'Migut.L00744' => 'egut', 'Migut.L00746' => 'egut', 'Migut.L00798' => 'egut', 'Migut.L00799' => 'egut', 'Migut.N02096' => 'egut', 'MSTRG.11259' => 'ama', 'MSTRG.23142' => 'ama', 'MSTRG.2499' => 'ama', 'Nitab4.5_0000003g0730' => 'nta', 'Nitab4.5_0000137g0020' => 'nta', 'Nitab4.5_0000721g0210' => 'nta', 'Nitab4.5_0000723g0050' => 'nta', 'Nitab4.5_0000913g0070' => 'nta', 'Nitab4.5_0001332g0040' => 'nta', 'Nitab4.5_0001771g0050' => 'nta', 'Nitab4.5_0001918g0050' => 'nta', 'Nitab4.5_0002686g0030' => 'nta', 'Nitab4.5_0003156g0020' => 'nta', 'Nitab4.5_0003383g0040' => 'nta', 'Nitab4.5_0003918g0010' => 'nta', 'Nitab4.5_0006760g0010' => 'nta', 'Nn1g05981' => 'nnu', 'Nn1g06288' => 'nnu', 'Nn3g16371' => 'nnu', 'Nn3g16786' => 'nnu', 'Nn4g22232' => 'nnu', 'Oeu005144.1' => 'oeu', 'Oeu005145.1' => 'oeu', 'Oeu011348.1' => 'oeu', 'Oeu016415.1' => 'oeu', 'Oeu023501.1' => 'oeu', 'Oeu044473.1' => 'oeu', 'Oeu048892.2' => 'oeu', 'Os01g0549200' => 'osa', 'Os02g0469300' => 'osa', 'Os04g0311100' => 'osa', 'Os06g0474900' => 'osa', 'Os10g0181700' => 'osa', 'Os11g0454800' => 'osa', 'Peaxi162Scf00037g00714' => 'pax', 'Peaxi162Scf00084g01217' => 'pax', 'Peaxi162Scf00257g00217' => 'pax', 'Peaxi162Scf00516g00215' => 'pax', 'Peaxi162Scf00689g00123' => 'pax', 'PGR044G2719' => 'pgr', 'PGR083G1360' => 'pgr', 'PGR102G2849' => 'pgr', 'PGR119G2534' => 'pgr', 'PGSC0003DMG400003538' => 'stu', 'PGSC0003DMG400028138' => 'stu', 'PGSC0003DMG400031732' => 'stu', 'PGSC0003DMG400038165' => 'stu', 'Phvul.002G284600' => 'pvu', 'Phvul.003G258200' => 'pvu', 'Phvul.009G176500' => 'pvu', 'Potri.003G167201' => 'ptr', 'Potri.005G118400' => 'ptr', 'Potri.012G089000' => 'ptr', 'Potri.012G102800' => 'ptr', 'Potri.015G079400' => 'ptr', 'Potri.015G100900' => 'ptr', 'Pp3c14_9810' => 'ppa', 'Pp3c15_10450' => 'ppa', 'Pp3c20_19150' => 'ppa', 'Pp3c23_12740' => 'ppa', 'Pp3c23_6310' => 'ppa', 'Pp3c24_3720' => 'ppa', 'Pp3c27_2580' => 'ppa', 'Pp3c9_8990' => 'ppa', 'PRCOL_00002854' => 'pco', 'Prupe.1G221200' => 'ppe', 'Prupe.3G289000' => 'ppe', 'Prupe.5G147000' => 'ppe', 'Prupe.6G157300' => 'ppe', 'Prupe.7G163400' => 'ppe', 'Psat0s2177g0040' => 'psa', 'Psat3g174760' => 'psa', 'Psat3g192160' => 'psa', 'Psat4g058520' => 'psa', 'Psat4g096840' => 'psa', 'Psat7g037320' => 'psa', 'PSO017G1274' => 'pso', 'PSO017G5166' => 'pso', 'PSO063G4558' => 'pso', 'PSO170G4458' => 'pso', 'PSO170G5005' => 'pso', 'PSO210G6156' => 'pso', 'PSO210G6635' => 'pso', 'PSO210G7397' => 'pso', 'PSO210G7700' => 'pso', 'PSO455G0035' => 'pso', 'PSO455G0180' => 'pso', 'PSO478G4515' => 'pso', 'PSO832G1305' => 'pso', 'PSO832G3489' => 'pso', 'QL02p075247' => 'qlo', 'QL03p051148' => 'qlo', 'QL05p010313' => 'qlo', 'QL06p034627' => 'qlo', 'QL10p001889' => 'qlo', 'QL10p010846' => 'qlo', 'RcHm_v2.0_Chr1g0350621' => 'rch', 'RcHm_v2.0_Chr1g0350641' => 'rch', 'RcHm_v2.0_Chr2g0092891' => 'rch', 'RcHm_v2.0_Chr2g0100251' => 'rch', 'RcHm_v2.0_Chr2g0158661' => 'rch', 'RcHm_v2.0_Chr2g0172741' => 'rch', 'RcHm_v2.0_Chr4g0429571' => 'rch', 'RcHm_v2.0_Chr5g0042471' => 'rch', 'RcHm_v2.0_Chr7g0189451' => 'rch', 'Rhsim08G0052000' => 'rsi', 'Rhsim08G0174400' => 'rsi', 'Rhsim08G0193200' => 'rsi', 'Rhsim10G0214800' => 'rsi', 'Rhsim10G0214900' => 'rsi', 'Rhsim10G0215000' => 'rsi', 'Rhsim12G0022900' => 'rsi', 'Rhsim12G0177500' => 'rsi', 'Rhsim12G0177700' => 'rsi', 'Sabra03G0122600' => 'sbr', 'Sabra05G0097400' => 'sbr', 'Sabra12G0064100' => 'sbr', 'Sabra15G0121300' => 'sbr', 'SalBow2G0642' => 'sbo', 'SalBow5G2667' => 'sbo', 'SalBow5G4873' => 'sbo', 'SalBow8G2395' => 'sbo', 'Sc03g0003290' => 'sci', 'Sc10g0010130' => 'sci', 'Sc22g0003650' => 'sci', 'Sed0001603' => 'sed', 'Sed0004259' => 'sed', 'Sed0006789' => 'sed', 'Sed0011838' => 'sed', 'Sed0012964' => 'sed', 'Sed0016383' => 'sed', 'Sed0019010' => 'sed', 'Sed0020188' => 'sed', 'SEGI_04702' => 'sgi', 'SEGI_17231' => 'sgi', 'SEGI_18877' => 'sgi', 'SEGI_25196' => 'sgi', 'SEGI_25515' => 'sgi', 'SEGI_28445' => 'sgi', 'SEGI_37452' => 'sgi', 'SGA_v2.0_scaffold188G40336' => 'sas', 'SGA_v2.0_scaffold228G43247' => 'sas', 'SGA_v2.0_scaffold280G46853' => 'sas', 'SGA_v2.0_scaffold34G13808' => 'sas', 'SGA_v2.0_scaffold40G15576' => 'sas', 'SGA_v2.0_scaffold611G53188' => 'sas', 'SGA_v2.0_scaffold78G25461' => 'sas', 'SGA_v2.0_scaffold90G27888' => 'sas', 'SHI08601' => 'shi', 'SHI08606' => 'shi', 'SHI17117' => 'shi', 'SHI17119' => 'shi', 'SMO118G0201' => 'smo', 'SMO169G0247' => 'smo', 'SMO176G0006' => 'smo', 'SMO176G0015' => 'smo', 'SMO202G0006' => 'smo', 'SMO240G0050' => 'smo', 'SMO286G0009' => 'smo', 'SMO338G0033' => 'smo', 'SMO356G0533' => 'smo', 'SMO364G0382' => 'smo', 'SMO367G0166' => 'smo', 'SMO367G1098' => 'smo', 'Solyc01g009920.3' => 'sly', 'Solyc01g099300.3' => 'sly', 'Solyc02g084700.3' => 'sly', 'Solyc03g097520.3' => 'sly', 'Solyc06g071580.3' => 'sly', 'Solyc10g081760.3' => 'sly', 'Sopen01g005480' => 'spe', 'Sopen01g042850' => 'spe', 'Sopen02g029370' => 'spe', 'Sopen03g028280' => 'spe', 'Sopen06g027870' => 'spe', 'Sopen10g032270' => 'spe', 'Sp5g18180' => 'spa', 'Sp6g12880' => 'spa', 'Sp6g30850' => 'spa', 'Sp7g22960' => 'spa', 'Sp7g34010' => 'spa', 'SpUn1326_0010' => 'spa', 'TAR371G0242' => 'tar', 'TAR622G0638' => 'tar', 'TAR628G1548' => 'tar', 'TAR629G1079' => 'tar', 'TAR629G3413' => 'tar', 'THA.LOC104804249' => 'tha', 'THA.LOC104808315' => 'tha', 'THA.LOC104809238' => 'tha', 'THA.LOC104825484' => 'tha', 'Thecc.01G025500' => 'tca', 'Thecc.03G015800' => 'tca', 'Thecc.03G018000' => 'tca', 'Thecc.03G134800' => 'tca', 'Thecc.04G014700' => 'tca', 'Thhalv10006991m.g' => 'esa', 'Thhalv10012707m.g' => 'esa', 'Thhalv10015739m.g' => 'esa', 'Thhalv10024553m.g' => 'esa', 'Thhalv10024673m.g' => 'esa', 'Thhalv10029187m.g' => 'esa', 'TPR.G12971' => 'tpr', 'TPR.G29396' => 'tpr', 'TPR.G33376' => 'tpr', 'TPR.G35508' => 'tpr', 'TPR.G35516' => 'tpr', 'TPR.G37317' => 'tpr', 'TPR.G37389' => 'tpr', 'TPR.G37523' => 'tpr', 'TPR.G559' => 'tpr', 'TWI14G0070' => 'twi', 'TWI14G0729' => 'twi', 'TWI18G0596' => 'twi', 'TWI39G0780' => 'twi', 'TWI39G0850' => 'twi', 'TWI73G1052' => 'twi', 'unitig_52.g17485' => 'ugi', 'unitig_61.g26355' => 'ugi', 'vmacro01040' => 'vma', 'vmacro16731' => 'vma', 'vmacro18270' => 'vma', 'vmacro19142' => 'vma', 'vmacro19407' => 'vma', 'vmacro19408' => 'vma', 'vmacro21899' => 'vma', 'vmacro21900' => 'vma', 'vmacro21901' => 'vma', 'VMungo0251G0490' => 'vmu', 'VMungo0251G1748' => 'vmu', 'VMungo1309G0421' => 'vmu', 'Zm00001eb086500' => 'zma', 'Zm00001eb150680' => 'zma', 'Zm00001eb162330' => 'zma', 'Zm00001eb203130' => 'zma', 'Zm00001eb369480' => 'zma', 'Zm00001eb382340' => 'zma', 'Zm00001eb416360' => 'zma' ), 'gf_id' => 'HOM05D000902', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000902' ), 'data_identifier' => 'HOM05D000902', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000902', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '663', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02470' => 'bna', 'A01p16260' => 'bna', 'A02p01680' => 'bna', 'A03p16600' => 'bna', 'A03p55660' => 'bna', 'A03p64160' => 'bna', 'A03p64170' => 'bna', 'A08p31900' => 'bna', 'A09p59530' => 'bna', 'A10p08230' => 'bna', 'A10p25090' => 'bna', 'Aa31LG3G7100' => 'aar', 'Aa31LG3G7110' => 'aar', 'Aa31LG6G13160' => 'aar', 'Aa31LG7G10770' => 'aar', 'Aa31LG7G3830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2723' => 'aag', 'Actinidia08045' => 'ach', 'Actinidia08888' => 'ach', 'Actinidia18333' => 'ach', 'Actinidia19334' => 'ach', 'Actinidia25552' => 'ach', 'Actinidia26089' => 'ach', 'Actinidia30615' => 'ach', 'Actinidia30616' => 'ach', 'Actinidia33083' => 'ach', 'Actinidia35762' => 'ach', 'Ah.02g110620' => 'amhyb', 'Ah.11g046390' => 'amhyb', 'AL1G31670' => 'aly', 'AL6G23730' => 'aly', 'AL7G14740' => 'aly', 'AL7G14750' => 'aly', 'AL7G14760' => 'aly', 'AL7G28220' => 'aly', 'AL8G24940' => 'aly', 'Aqoxy3G01665' => 'aox', 'Aqoxy3G02853' => 'aox', 'Aqoxy5G01513' => 'aox', 'Aqoxy5G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8SKA4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ75LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKDA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0LJZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7REX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZP4YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWX7I5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2QKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS0L9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPCD8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q161UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC7XCF' => 'arhy', 'AT1G19100' => 'ath', 'AT4G24970' => 'ath', 'AT4G36270' => 'ath', 'AT4G36280' => 'ath', 'AT4G36290' => 'ath', 'AT5G13130' => 'ath', 'AT5G50780' => 'ath', 'ATR0582G266' => 'atr', 'ATR0661G195' => 'atr', 'ATR1152G031' => 'atr', 'Atru.chr11.2382' => 'acertr', 'Atru.chr12.2337' => 'acertr', 'Atru.chr3.744' => 'acertr', 'Atru.chr6.1870' => 'acertr', 'Atru.chr9.2515' => 'acertr', 'AUR62004120' => 'cqu', 'AUR62005667' => 'cqu', 'AUR62007634' => 'cqu', 'AUR62008186' => 'cqu', 'AUR62008187' => 'cqu', 'AUR62008188' => 'cqu', 'AUR62027954' => 'cqu', 'AUR62028766' => 'cqu', 'AUR62028767' => 'cqu', 'AUR62028768' => 'cqu', 'AUR62028886' => 'cqu', 'AUR62029563' => 'cqu', 'AUR62038832' => 'cqu', 'BcaB01g04149' => 'bca', 'BcaB03g12940' => 'bca', 'BcaB03g13090' => 'bca', 'BcaB03g14466' => 'bca', 'BcaB05g24035' => 'bca', 'BcaC01g06050' => 'bca', 'BcaC04g19148' => 'bca', 'BcaC04g20761' => 'bca', 'BcaC06g32845' => 'bca', 'BcaC07g41274' => 'bca', 'BcaC09g50827' => 'bca', 'BcaNung00741' => 'bca', 'BcaNung00742' => 'bca', 'BcaNung01859' => 'bca', 'BcaNung03985' => 'bca', 'BcaNung03989' => 'bca', 'BcaNung05661' => 'bca', 'BolC1t00257H' => 'bol', 'BolC1t01956H' => 'bol', 'BolC2t06534H' => 'bol', 'BolC3t14334H' => 'bol', 'BolC5t30451H' => 'bol', 'BolC7t45880H' => 'bol', 'BolC7t46586H' => 'bol', 'BolC8t49301H' => 'bol', 'BolC8t51837H' => 'bol', 'BolC9t56822H' => 'bol', 'BolC9t59235H' => 'bol', 'BraA01t00234Z' => 'bra', 'BraA01t01563Z' => 'bra', 'BraA02t05147Z' => 'bra', 'BraA03t10947Z' => 'bra', 'BraA03t14633Z' => 'bra', 'BraA08t35112Z' => 'bra', 'BraA09t41330Z' => 'bra', 'BraA10t44570Z' => 'bra', 'C01p02670' => 'bna', 'C01p20260' => 'bna', 'C02p05890' => 'bna', 'C03p19530' => 'bna', 'C05p17470' => 'bna', 'C07p53900' => 'bna', 'C07p61630' => 'bna', 'C08p16800' => 'bna', 'C08p42810' => 'bna', 'C09p39480' => 'bna', 'C09p63980' => 'bna', 'CAN.G1001.7' => 'can', 'CAN.G1034.55' => 'can', 'CAN.G143.7' => 'can', 'CAN.G3340.1' => 'can', 'CAN.G358.19' => 'can', 'CAN.G373.2' => 'can', 'CAN.G674.16' => 'can', 'CAN.G674.17' => 'can', 'CAN.G674.18' => 'can', 'CAN.G732.2' => 'can', 'CAN.G732.3' => 'can', 'CAN.G993.39' => 'can', 'CANSAT01G2052' => 'cansat', 'CANSAT80G0070' => 'cansat', 'CANSAT80G0483' => 'cansat', 'CANSAT80G0625' => 'cansat', 'CARHR019690' => 'chi', 'CARHR080280' => 'chi', 'CARHR152750' => 'chi', 'CARHR152760' => 'chi', 'CARHR152770' => 'chi', 'CARHR200340' => 'chi', 'CARHR232370' => 'chi', 'CARHR244670' => 'chi', 'CARHR244680' => 'chi', 'CARHR257520' => 'chi', 'Carub.0001s1872' => 'cru', 'Carub.0006s1130' => 'cru', 'Carub.0007s0396' => 'cru', 'Carub.0007s0397' => 'cru', 'Carub.0007s1608' => 'cru', 'Carub.0008s1068' => 'cru', 'Carub.0008s1077' => 'cru', 'Ca_16158_v3' => 'car', 'Ca_17571_v3' => 'car', 'Ca_21936_v3' => 'car', 'Ca_22350_v3' => 'car', 'CBR_g22445' => 'cbr', 'CBR_g26290' => 'cbr', 'Cc04_g09610' => 'ccan', 'Cc04_g12280' => 'ccan', 'Cc07_g10230' => 'ccan', 'CDE02G0093' => 'cde', 'CDE02G0701' => 'cde', 'CDE04G1050' => 'cde', 'CDE05G1833' => 'cde', 'CDE05G3058' => 'cde', 'CDE05G3380' => 'cde', 'CDE06G0536' => 'cde', 'Cfa006923' => 'cfa', 'Cfa009402' => 'cfa', 'Cfa018751' => 'cfa', 'Cfa019164' => 'cfa', 'Cfa022935' => 'cfa', 'Ciclev10019081m.g' => 'ccl', 'Ciclev10025076m.g' => 'ccl', 'Ciclev10030712m.g' => 'ccl', 'Ciclev10033760m.g' => 'ccl', 'CiPaw.05G105600' => 'cil', 'CiPaw.08G136700' => 'cil', 'CiPaw.11G003900' => 'cil', 'CiPaw.11G023700' => 'cil', 'CiPaw.12G003700' => 'cil', 'ClCG06G017100' => 'cla', 'ClCG06G018110' => 'cla', 'ClCG07G008800' => 'cla', 'ClCG07G015330' => 'cla', 'COL.COLO4_13698' => 'col', 'COL.COLO4_16659' => 'col', 'COL.COLO4_21986' => 'col', 'COL.COLO4_24049' => 'col', 'COL.COLO4_29061' => 'col', 'COL.COLO4_29075' => 'col', 'COL.COLO4_30094' => 'col', 'Cpa.g.c33689' => 'cpa', 'Cpa.g.sc108.39' => 'cpa', 'Cpa.g.sc108.41' => 'cpa', 'Cpa.g.sc1163.1' => 'cpa', 'Cpa.g.sc4.155' => 'cpa', 'Cpa.g.sc6.194' => 'cpa', 'CsaV3_1G000340' => 'csa', 'CsaV3_1G001400' => 'csa', 'CsaV3_4G002220' => 'csa', 'CsaV3_4G005370' => 'csa', 'CSS0007487' => 'camsi', 'CSS0008066' => 'camsi', 'CSS0009120' => 'camsi', 'CSS0015512' => 'camsi', 'CSS0022409' => 'camsi', 'CSS0025358' => 'camsi', 'CSS0044547' => 'camsi', 'DCAR_013057' => 'dca', 'DCAR_015058' => 'dca', 'DCAR_016027' => 'dca', 'DCAR_017327' => 'dca', 'DCAR_020743' => 'dca', 'DCAR_026157' => 'dca', 'DCAR_032339' => 'dca', 'DCAR_032340' => 'dca', 'Dinv11200' => 'din', 'Dinv11201' => 'din', 'Dinv20631' => 'din', 'Dinv23182' => 'din', 'Dinv33466' => 'din', 'Dinv33583' => 'din', 'Dinv38565' => 'din', 'Duzib068G0200' => 'dzi', 'Duzib147G0132' => 'dzi', 'Duzib147G0635' => 'dzi', 'Duzib205G1670' => 'dzi', 'Duzib251G0606' => 'dzi', 'ECA232G3336' => 'eca', 'ECA232G3763' => 'eca', 'ECA232G4845' => 'eca', 'ECA234G1607' => 'eca', 'ECA246G0932' => 'eca', 'ECA247G0781' => 'eca', 'ECA247G1932' => 'eca', 'ECA247G2079' => 'eca', 'ECA247G3338' => 'eca', 'ECA247G4115' => 'eca', 'EL10Ac3g06552' => 'bvu', 'EL10Ac5g10721' => 'bvu', 'EL10Ac5g10722' => 'bvu', 'EL10Ac5g10723' => 'bvu', 'EL10Ac5g11361' => 'bvu', 'EL10Ac6g13553' => 'bvu', 'EL10As8g23872' => 'bvu', 'Eucgr.B00250' => 'egr', 'Eucgr.B00251' => 'egr', 'Eucgr.B03533' => 'egr', 'Eucgr.I02381' => 'egr', 'Eucgr.K02700' => 'egr', 'FAN02G0174' => 'fan', 'FAN02G3146' => 'fan', 'FAN04G1672' => 'fan', 'FAN04G2273' => 'fan', 'FAN05G2791' => 'fan', 'FAN05G4035' => 'fan', 'FAN07G0834' => 'fan', 'FAN08G1198' => 'fan', 'FAN09G4182' => 'fan', 'FAN12G0496' => 'fan', 'FAN13G1027' => 'fan', 'FAN13G2951' => 'fan', 'FAN14G0705' => 'fan', 'FAN14G0720' => 'fan', 'FAN17G0201' => 'fan', 'FAN17G2665' => 'fan', 'FAN18G1456' => 'fan', 'FAN18G1525' => 'fan', 'FAN18G3500' => 'fan', 'FAN28G2670' => 'fan', 'FvH4_1g12391' => 'fve', 'FvH4_4g23220' => 'fve', 'FvH4_5g08810' => 'fve', 'FvH4_5g28960' => 'fve', 'FvH4_6g42820' => 'fve', 'FvH4_6g51110' => 'fve', 'Glyma.02G051802' => 'gma', 'Glyma.04G185300' => 'gma', 'Glyma.05G202900' => 'gma', 'Glyma.08G010300' => 'gma', 'Glyma.16G131900' => 'gma', 'Glyma.17G087900' => 'gma', 'Gohir.A07G048600' => 'ghi', 'Gohir.A11G179000' => 'ghi', 'Gohir.A12G140900' => 'ghi', 'Gohir.A12G140950' => 'ghi', 'Gohir.A12G191700' => 'ghi', 'Gohir.A13G086300' => 'ghi', 'Gohir.D07G052900' => 'ghi', 'Gohir.D11G186600' => 'ghi', 'Gohir.D12G145575' => 'ghi', 'Gohir.D12G145650' => 'ghi', 'Gohir.D12G145725' => 'ghi', 'Gohir.D12G194050' => 'ghi', 'Gohir.D13G091800' => 'ghi', 'Gorai.001G055900' => 'gra', 'Gorai.007G198400' => 'gra', 'Gorai.008G157000' => 'gra', 'Gorai.008G157100' => 'gra', 'Gorai.008G208700' => 'gra', 'Gorai.010G138700' => 'gra', 'GSVIVG01000977001' => 'vvi', 'GSVIVG01007708001' => 'vvi', 'GSVIVG01008587001' => 'vvi', 'GSVIVG01018849001' => 'vvi', 'GSVIVG01032432001' => 'vvi', 'HanXRQChr02g0034131' => 'han', 'HanXRQChr02g0035981' => 'han', 'HanXRQChr02g0035991' => 'han', 'HanXRQChr05g0155611' => 'han', 'HanXRQChr05g0155621' => 'han', 'HanXRQChr08g0236501' => 'han', 'HanXRQChr09g0261321' => 'han', 'HanXRQChr09g0272081' => 'han', 'HanXRQChr10g0310741' => 'han', 'HanXRQChr11g0325591' => 'han', 'HanXRQChr12g0385691' => 'han', 'HanXRQChr13g0387801' => 'han', 'HanXRQChr15g0463011' => 'han', 'Haze_03826' => 'cav', 'Haze_03827' => 'cav', 'Haze_07183' => 'cav', 'Haze_07537' => 'cav', 'Haze_07539' => 'cav', 'Haze_12461' => 'cav', 'Haze_16115' => 'cav', 'Haze_16808' => 'cav', 'Haze_18531' => 'cav', 'Hma1.2p1_0046F.1_g026700' => 'hma', 'Hma1.2p1_0046F.1_g026710' => 'hma', 'Hma1.2p1_0168F.1_g074340' => 'hma', 'Hma1.2p1_0266F.1_g107030' => 'hma', 'Hma1.2p1_0266F.1_g107060' => 'hma', 'Hma1.2p1_0275F.1_g110510' => 'hma', 'Hma1.2p1_0592F.1_g185490' => 'hma', 'Hma1.2p1_0592F.1_g185500' => 'hma', 'Hma1.2p1_0592F.1_g185510' => 'hma', 'Hma1.2p1_0592F.1_g185520' => 'hma', 'Hma1.2p1_0592F.1_g185530' => 'hma', 'Hma1.2p1_0818F.1_g223450' => 'hma', 'HPP92_009708' => 'vpl', 'HPP92_009793' => 'vpl', 'HPP92_009796' => 'vpl', 'HPP92_009797' => 'vpl', 'HPP92_014940' => 'vpl', 'HPP92_014988' => 'vpl', 'Hund02463' => 'sun', 'Hund02760' => 'sun', 'Hund05071' => 'sun', 'Hund10108' => 'sun', 'Hund11204' => 'sun', 'Hund14016' => 'sun', 'Hund16464' => 'sun', 'Lalb_Chr09g0333391' => 'lal', 'Lalb_Chr11g0070461' => 'lal', 'Lalb_Chr12g0201671' => 'lal', 'Lalb_Chr13g0297161' => 'lal', 'Lj1g0002823' => 'lja', 'Lj3C1074T6' => 'lonja', 'Lj4A212T28' => 'lonja', 'Lj4g0005516' => 'lja', 'Lj4g0013705' => 'lja', 'Lj4g0027865' => 'lja', 'Lj5C92G16' => 'lonja', 'Lj5C92T12' => 'lonja', 'Lj7C596T3' => 'lonja', 'Lj9A446G59' => 'lonja', 'Lj9A482G21' => 'lonja', 'Lsat_1_v5_gn_1_28261' => 'lsa', 'Lsat_1_v5_gn_1_28281' => 'lsa', 'Lsat_1_v5_gn_1_32721' => 'lsa', 'Lsat_1_v5_gn_4_151760' => 'lsa', 'Lsat_1_v5_gn_4_2120' => 'lsa', 'Lsat_1_v5_gn_4_75761' => 'lsa', 'Lsat_1_v5_gn_5_10920' => 'lsa', 'Manes.02G099900' => 'mes', 'Manes.11G096200' => 'mes', 'Manes.12G007200' => 'mes', 'Manes.14G048300' => 'mes', 'Manes.17G114700' => 'mes', 'Mapoly0002s0070' => 'mpo', 'Mapoly0029s0099' => 'mpo', 'MBI07_g24742_MAGBIO' => 'mbi', 'MBI10_g27988_MAGBIO' => 'mbi', 'MBI11_g13057_MAGBIO' => 'mbi', 'MD02G1137200' => 'mdo', 'MD06G1137200' => 'mdo', 'MD07G1122300' => 'mdo', 'MD09G1078200' => 'mdo', 'MD13G1123700' => 'mdo', 'MD14G1151900' => 'mdo', 'MD17G1030900' => 'mdo', 'MD17G1068200' => 'mdo', 'MD17G1068600' => 'mdo', 'Medtr3g077540' => 'mtr', 'Medtr4g105530' => 'mtr', 'Medtr8g076580' => 'mtr', 'Medtr8g076590' => 'mtr', 'Medtr8g096410' => 'mtr', 'MELO3C016411.2' => 'cme', 'MELO3C017780.2' => 'cme', 'MELO3C022560.2' => 'cme', 'MELO3C026187.2' => 'cme', 'MELO3C026286.2' => 'cme', 'MELO3C032854.2' => 'cme', 'Migut.H02495' => 'egut', 'Migut.I00561' => 'egut', 'Migut.K01015' => 'egut', 'Migut.K01016' => 'egut', 'Migut.L00743' => 'egut', 'Migut.L00744' => 'egut', 'Migut.L00746' => 'egut', 'Migut.L00798' => 'egut', 'Migut.L00799' => 'egut', 'Migut.N02096' => 'egut', 'MSTRG.11259' => 'ama', 'MSTRG.23142' => 'ama', 'MSTRG.2499' => 'ama', 'Nitab4.5_0000003g0730' => 'nta', 'Nitab4.5_0000137g0020' => 'nta', 'Nitab4.5_0000721g0210' => 'nta', 'Nitab4.5_0000723g0050' => 'nta', 'Nitab4.5_0000913g0070' => 'nta', 'Nitab4.5_0001332g0040' => 'nta', 'Nitab4.5_0001771g0050' => 'nta', 'Nitab4.5_0001918g0050' => 'nta', 'Nitab4.5_0002686g0030' => 'nta', 'Nitab4.5_0003156g0020' => 'nta', 'Nitab4.5_0003383g0040' => 'nta', 'Nitab4.5_0003918g0010' => 'nta', 'Nitab4.5_0006760g0010' => 'nta', 'Nn1g05981' => 'nnu', 'Nn1g06288' => 'nnu', 'Nn3g16371' => 'nnu', 'Nn3g16786' => 'nnu', 'Nn4g22232' => 'nnu', 'Oeu005144.1' => 'oeu', 'Oeu005145.1' => 'oeu', 'Oeu011348.1' => 'oeu', 'Oeu016415.1' => 'oeu', 'Oeu023501.1' => 'oeu', 'Oeu044473.1' => 'oeu', 'Oeu048892.2' => 'oeu', 'Os01g0549200' => 'osa', 'Os02g0469300' => 'osa', 'Os04g0311100' => 'osa', 'Os06g0474900' => 'osa', 'Os10g0181700' => 'osa', 'Os11g0454800' => 'osa', 'Peaxi162Scf00037g00714' => 'pax', 'Peaxi162Scf00084g01217' => 'pax', 'Peaxi162Scf00257g00217' => 'pax', 'Peaxi162Scf00516g00215' => 'pax', 'Peaxi162Scf00689g00123' => 'pax', 'PGR044G2719' => 'pgr', 'PGR083G1360' => 'pgr', 'PGR102G2849' => 'pgr', 'PGR119G2534' => 'pgr', 'PGSC0003DMG400003538' => 'stu', 'PGSC0003DMG400028138' => 'stu', 'PGSC0003DMG400031732' => 'stu', 'PGSC0003DMG400038165' => 'stu', 'Phvul.002G284600' => 'pvu', 'Phvul.003G258200' => 'pvu', 'Phvul.009G176500' => 'pvu', 'Potri.003G167201' => 'ptr', 'Potri.005G118400' => 'ptr', 'Potri.012G089000' => 'ptr', 'Potri.012G102800' => 'ptr', 'Potri.015G079400' => 'ptr', 'Potri.015G100900' => 'ptr', 'Pp3c14_9810' => 'ppa', 'Pp3c15_10450' => 'ppa', 'Pp3c20_19150' => 'ppa', 'Pp3c23_12740' => 'ppa', 'Pp3c23_6310' => 'ppa', 'Pp3c24_3720' => 'ppa', 'Pp3c27_2580' => 'ppa', 'Pp3c9_8990' => 'ppa', 'PRCOL_00002854' => 'pco', 'Prupe.1G221200' => 'ppe', 'Prupe.3G289000' => 'ppe', 'Prupe.5G147000' => 'ppe', 'Prupe.6G157300' => 'ppe', 'Prupe.7G163400' => 'ppe', 'Psat0s2177g0040' => 'psa', 'Psat3g174760' => 'psa', 'Psat3g192160' => 'psa', 'Psat4g058520' => 'psa', 'Psat4g096840' => 'psa', 'Psat7g037320' => 'psa', 'PSO017G1274' => 'pso', 'PSO017G5166' => 'pso', 'PSO063G4558' => 'pso', 'PSO170G4458' => 'pso', 'PSO170G5005' => 'pso', 'PSO210G6156' => 'pso', 'PSO210G6635' => 'pso', 'PSO210G7397' => 'pso', 'PSO210G7700' => 'pso', 'PSO455G0035' => 'pso', 'PSO455G0180' => 'pso', 'PSO478G4515' => 'pso', 'PSO832G1305' => 'pso', 'PSO832G3489' => 'pso', 'QL02p075247' => 'qlo', 'QL03p051148' => 'qlo', 'QL05p010313' => 'qlo', 'QL06p034627' => 'qlo', 'QL10p001889' => 'qlo', 'QL10p010846' => 'qlo', 'RcHm_v2.0_Chr1g0350621' => 'rch', 'RcHm_v2.0_Chr1g0350641' => 'rch', 'RcHm_v2.0_Chr2g0092891' => 'rch', 'RcHm_v2.0_Chr2g0100251' => 'rch', 'RcHm_v2.0_Chr2g0158661' => 'rch', 'RcHm_v2.0_Chr2g0172741' => 'rch', 'RcHm_v2.0_Chr4g0429571' => 'rch', 'RcHm_v2.0_Chr5g0042471' => 'rch', 'RcHm_v2.0_Chr7g0189451' => 'rch', 'Rhsim08G0052000' => 'rsi', 'Rhsim08G0174400' => 'rsi', 'Rhsim08G0193200' => 'rsi', 'Rhsim10G0214800' => 'rsi', 'Rhsim10G0214900' => 'rsi', 'Rhsim10G0215000' => 'rsi', 'Rhsim12G0022900' => 'rsi', 'Rhsim12G0177500' => 'rsi', 'Rhsim12G0177700' => 'rsi', 'Sabra03G0122600' => 'sbr', 'Sabra05G0097400' => 'sbr', 'Sabra12G0064100' => 'sbr', 'Sabra15G0121300' => 'sbr', 'SalBow2G0642' => 'sbo', 'SalBow5G2667' => 'sbo', 'SalBow5G4873' => 'sbo', 'SalBow8G2395' => 'sbo', 'Sc03g0003290' => 'sci', 'Sc10g0010130' => 'sci', 'Sc22g0003650' => 'sci', 'Sed0001603' => 'sed', 'Sed0004259' => 'sed', 'Sed0006789' => 'sed', 'Sed0011838' => 'sed', 'Sed0012964' => 'sed', 'Sed0016383' => 'sed', 'Sed0019010' => 'sed', 'Sed0020188' => 'sed', 'SEGI_04702' => 'sgi', 'SEGI_17231' => 'sgi', 'SEGI_18877' => 'sgi', 'SEGI_25196' => 'sgi', 'SEGI_25515' => 'sgi', 'SEGI_28445' => 'sgi', 'SEGI_37452' => 'sgi', 'SGA_v2.0_scaffold188G40336' => 'sas', 'SGA_v2.0_scaffold228G43247' => 'sas', 'SGA_v2.0_scaffold280G46853' => 'sas', 'SGA_v2.0_scaffold34G13808' => 'sas', 'SGA_v2.0_scaffold40G15576' => 'sas', 'SGA_v2.0_scaffold611G53188' => 'sas', 'SGA_v2.0_scaffold78G25461' => 'sas', 'SGA_v2.0_scaffold90G27888' => 'sas', 'SHI08601' => 'shi', 'SHI08606' => 'shi', 'SHI17117' => 'shi', 'SHI17119' => 'shi', 'SMO118G0201' => 'smo', 'SMO169G0247' => 'smo', 'SMO176G0006' => 'smo', 'SMO176G0015' => 'smo', 'SMO202G0006' => 'smo', 'SMO240G0050' => 'smo', 'SMO286G0009' => 'smo', 'SMO338G0033' => 'smo', 'SMO356G0533' => 'smo', 'SMO364G0382' => 'smo', 'SMO367G0166' => 'smo', 'SMO367G1098' => 'smo', 'Solyc01g009920.3' => 'sly', 'Solyc01g099300.3' => 'sly', 'Solyc02g084700.3' => 'sly', 'Solyc03g097520.3' => 'sly', 'Solyc06g071580.3' => 'sly', 'Solyc10g081760.3' => 'sly', 'Sopen01g005480' => 'spe', 'Sopen01g042850' => 'spe', 'Sopen02g029370' => 'spe', 'Sopen03g028280' => 'spe', 'Sopen06g027870' => 'spe', 'Sopen10g032270' => 'spe', 'Sp5g18180' => 'spa', 'Sp6g12880' => 'spa', 'Sp6g30850' => 'spa', 'Sp7g22960' => 'spa', 'Sp7g34010' => 'spa', 'SpUn1326_0010' => 'spa', 'TAR371G0242' => 'tar', 'TAR622G0638' => 'tar', 'TAR628G1548' => 'tar', 'TAR629G1079' => 'tar', 'TAR629G3413' => 'tar', 'THA.LOC104804249' => 'tha', 'THA.LOC104808315' => 'tha', 'THA.LOC104809238' => 'tha', 'THA.LOC104825484' => 'tha', 'Thecc.01G025500' => 'tca', 'Thecc.03G015800' => 'tca', 'Thecc.03G018000' => 'tca', 'Thecc.03G134800' => 'tca', 'Thecc.04G014700' => 'tca', 'Thhalv10006991m.g' => 'esa', 'Thhalv10012707m.g' => 'esa', 'Thhalv10015739m.g' => 'esa', 'Thhalv10024553m.g' => 'esa', 'Thhalv10024673m.g' => 'esa', 'Thhalv10029187m.g' => 'esa', 'TPR.G12971' => 'tpr', 'TPR.G29396' => 'tpr', 'TPR.G33376' => 'tpr', 'TPR.G35508' => 'tpr', 'TPR.G35516' => 'tpr', 'TPR.G37317' => 'tpr', 'TPR.G37389' => 'tpr', 'TPR.G37523' => 'tpr', 'TPR.G559' => 'tpr', 'TWI14G0070' => 'twi', 'TWI14G0729' => 'twi', 'TWI18G0596' => 'twi', 'TWI39G0780' => 'twi', 'TWI39G0850' => 'twi', 'TWI73G1052' => 'twi', 'unitig_52.g17485' => 'ugi', 'unitig_61.g26355' => 'ugi', 'vmacro01040' => 'vma', 'vmacro16731' => 'vma', 'vmacro18270' => 'vma', 'vmacro19142' => 'vma', 'vmacro19407' => 'vma', 'vmacro19408' => 'vma', 'vmacro21899' => 'vma', 'vmacro21900' => 'vma', 'vmacro21901' => 'vma', 'VMungo0251G0490' => 'vmu', 'VMungo0251G1748' => 'vmu', 'VMungo1309G0421' => 'vmu', 'Zm00001eb086500' => 'zma', 'Zm00001eb150680' => 'zma', 'Zm00001eb162330' => 'zma', 'Zm00001eb203130' => 'zma', 'Zm00001eb369480' => 'zma', 'Zm00001eb382340' => 'zma', 'Zm00001eb416360' => 'zma' ) $gf_id = 'HOM05D000902' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000902' ) $data_identifier = 'HOM05D000902' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 13, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 10, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 6, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 9, 'hma' => (int) 12, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 4, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 6, 'ppa' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 6, 'rch' => (int) 9, 'rsi' => (int) 9, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 12, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 3, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416360' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000902', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '663', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02470' => 'bna', 'A01p16260' => 'bna', 'A02p01680' => 'bna', 'A03p16600' => 'bna', 'A03p55660' => 'bna', 'A03p64160' => 'bna', 'A03p64170' => 'bna', 'A08p31900' => 'bna', 'A09p59530' => 'bna', 'A10p08230' => 'bna', 'A10p25090' => 'bna', 'Aa31LG3G7100' => 'aar', 'Aa31LG3G7110' => 'aar', 'Aa31LG6G13160' => 'aar', 'Aa31LG7G10770' => 'aar', 'Aa31LG7G3830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2723' => 'aag', 'Actinidia08045' => 'ach', 'Actinidia08888' => 'ach', 'Actinidia18333' => 'ach', 'Actinidia19334' => 'ach', 'Actinidia25552' => 'ach', 'Actinidia26089' => 'ach', 'Actinidia30615' => 'ach', 'Actinidia30616' => 'ach', 'Actinidia33083' => 'ach', 'Actinidia35762' => 'ach', 'Ah.02g110620' => 'amhyb', 'Ah.11g046390' => 'amhyb', 'AL1G31670' => 'aly', 'AL6G23730' => 'aly', 'AL7G14740' => 'aly', 'AL7G14750' => 'aly', 'AL7G14760' => 'aly', 'AL7G28220' => 'aly', 'AL8G24940' => 'aly', 'Aqoxy3G01665' => 'aox', 'Aqoxy3G02853' => 'aox', 'Aqoxy5G01513' => 'aox', 'Aqoxy5G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8SKA4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ75LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKDA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0LJZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7REX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZP4YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWX7I5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2QKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS0L9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPCD8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q161UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC7XCF' => 'arhy', 'AT1G19100' => 'ath', 'AT4G24970' => 'ath', 'AT4G36270' => 'ath', 'AT4G36280' => 'ath', 'AT4G36290' => 'ath', 'AT5G13130' => 'ath', 'AT5G50780' => 'ath', 'ATR0582G266' => 'atr', 'ATR0661G195' => 'atr', 'ATR1152G031' => 'atr', 'Atru.chr11.2382' => 'acertr', 'Atru.chr12.2337' => 'acertr', 'Atru.chr3.744' => 'acertr', 'Atru.chr6.1870' => 'acertr', 'Atru.chr9.2515' => 'acertr', 'AUR62004120' => 'cqu', 'AUR62005667' => 'cqu', 'AUR62007634' => 'cqu', 'AUR62008186' => 'cqu', 'AUR62008187' => 'cqu', 'AUR62008188' => 'cqu', 'AUR62027954' => 'cqu', 'AUR62028766' => 'cqu', 'AUR62028767' => 'cqu', 'AUR62028768' => 'cqu', 'AUR62028886' => 'cqu', 'AUR62029563' => 'cqu', 'AUR62038832' => 'cqu', 'BcaB01g04149' => 'bca', 'BcaB03g12940' => 'bca', 'BcaB03g13090' => 'bca', 'BcaB03g14466' => 'bca', 'BcaB05g24035' => 'bca', 'BcaC01g06050' => 'bca', 'BcaC04g19148' => 'bca', 'BcaC04g20761' => 'bca', 'BcaC06g32845' => 'bca', 'BcaC07g41274' => 'bca', 'BcaC09g50827' => 'bca', 'BcaNung00741' => 'bca', 'BcaNung00742' => 'bca', 'BcaNung01859' => 'bca', 'BcaNung03985' => 'bca', 'BcaNung03989' => 'bca', 'BcaNung05661' => 'bca', 'BolC1t00257H' => 'bol', 'BolC1t01956H' => 'bol', 'BolC2t06534H' => 'bol', 'BolC3t14334H' => 'bol', 'BolC5t30451H' => 'bol', 'BolC7t45880H' => 'bol', 'BolC7t46586H' => 'bol', 'BolC8t49301H' => 'bol', 'BolC8t51837H' => 'bol', 'BolC9t56822H' => 'bol', 'BolC9t59235H' => 'bol', 'BraA01t00234Z' => 'bra', 'BraA01t01563Z' => 'bra', 'BraA02t05147Z' => 'bra', 'BraA03t10947Z' => 'bra', 'BraA03t14633Z' => 'bra', 'BraA08t35112Z' => 'bra', 'BraA09t41330Z' => 'bra', 'BraA10t44570Z' => 'bra', 'C01p02670' => 'bna', 'C01p20260' => 'bna', 'C02p05890' => 'bna', 'C03p19530' => 'bna', 'C05p17470' => 'bna', 'C07p53900' => 'bna', 'C07p61630' => 'bna', 'C08p16800' => 'bna', 'C08p42810' => 'bna', 'C09p39480' => 'bna', 'C09p63980' => 'bna', 'CAN.G1001.7' => 'can', 'CAN.G1034.55' => 'can', 'CAN.G143.7' => 'can', 'CAN.G3340.1' => 'can', 'CAN.G358.19' => 'can', 'CAN.G373.2' => 'can', 'CAN.G674.16' => 'can', 'CAN.G674.17' => 'can', 'CAN.G674.18' => 'can', 'CAN.G732.2' => 'can', 'CAN.G732.3' => 'can', 'CAN.G993.39' => 'can', 'CANSAT01G2052' => 'cansat', 'CANSAT80G0070' => 'cansat', 'CANSAT80G0483' => 'cansat', 'CANSAT80G0625' => 'cansat', 'CARHR019690' => 'chi', 'CARHR080280' => 'chi', 'CARHR152750' => 'chi', 'CARHR152760' => 'chi', 'CARHR152770' => 'chi', 'CARHR200340' => 'chi', 'CARHR232370' => 'chi', 'CARHR244670' => 'chi', 'CARHR244680' => 'chi', 'CARHR257520' => 'chi', 'Carub.0001s1872' => 'cru', 'Carub.0006s1130' => 'cru', 'Carub.0007s0396' => 'cru', 'Carub.0007s0397' => 'cru', 'Carub.0007s1608' => 'cru', 'Carub.0008s1068' => 'cru', 'Carub.0008s1077' => 'cru', 'Ca_16158_v3' => 'car', 'Ca_17571_v3' => 'car', 'Ca_21936_v3' => 'car', 'Ca_22350_v3' => 'car', 'CBR_g22445' => 'cbr', 'CBR_g26290' => 'cbr', 'Cc04_g09610' => 'ccan', 'Cc04_g12280' => 'ccan', 'Cc07_g10230' => 'ccan', 'CDE02G0093' => 'cde', 'CDE02G0701' => 'cde', 'CDE04G1050' => 'cde', 'CDE05G1833' => 'cde', 'CDE05G3058' => 'cde', 'CDE05G3380' => 'cde', 'CDE06G0536' => 'cde', 'Cfa006923' => 'cfa', 'Cfa009402' => 'cfa', 'Cfa018751' => 'cfa', 'Cfa019164' => 'cfa', 'Cfa022935' => 'cfa', 'Ciclev10019081m.g' => 'ccl', 'Ciclev10025076m.g' => 'ccl', 'Ciclev10030712m.g' => 'ccl', 'Ciclev10033760m.g' => 'ccl', 'CiPaw.05G105600' => 'cil', 'CiPaw.08G136700' => 'cil', 'CiPaw.11G003900' => 'cil', 'CiPaw.11G023700' => 'cil', 'CiPaw.12G003700' => 'cil', 'ClCG06G017100' => 'cla', 'ClCG06G018110' => 'cla', 'ClCG07G008800' => 'cla', 'ClCG07G015330' => 'cla', 'COL.COLO4_13698' => 'col', 'COL.COLO4_16659' => 'col', 'COL.COLO4_21986' => 'col', 'COL.COLO4_24049' => 'col', 'COL.COLO4_29061' => 'col', 'COL.COLO4_29075' => 'col', 'COL.COLO4_30094' => 'col', 'Cpa.g.c33689' => 'cpa', 'Cpa.g.sc108.39' => 'cpa', 'Cpa.g.sc108.41' => 'cpa', 'Cpa.g.sc1163.1' => 'cpa', 'Cpa.g.sc4.155' => 'cpa', 'Cpa.g.sc6.194' => 'cpa', 'CsaV3_1G000340' => 'csa', 'CsaV3_1G001400' => 'csa', 'CsaV3_4G002220' => 'csa', 'CsaV3_4G005370' => 'csa', 'CSS0007487' => 'camsi', 'CSS0008066' => 'camsi', 'CSS0009120' => 'camsi', 'CSS0015512' => 'camsi', 'CSS0022409' => 'camsi', 'CSS0025358' => 'camsi', 'CSS0044547' => 'camsi', 'DCAR_013057' => 'dca', 'DCAR_015058' => 'dca', 'DCAR_016027' => 'dca', 'DCAR_017327' => 'dca', 'DCAR_020743' => 'dca', 'DCAR_026157' => 'dca', 'DCAR_032339' => 'dca', 'DCAR_032340' => 'dca', 'Dinv11200' => 'din', 'Dinv11201' => 'din', 'Dinv20631' => 'din', 'Dinv23182' => 'din', 'Dinv33466' => 'din', 'Dinv33583' => 'din', 'Dinv38565' => 'din', 'Duzib068G0200' => 'dzi', 'Duzib147G0132' => 'dzi', 'Duzib147G0635' => 'dzi', 'Duzib205G1670' => 'dzi', 'Duzib251G0606' => 'dzi', 'ECA232G3336' => 'eca', 'ECA232G3763' => 'eca', 'ECA232G4845' => 'eca', 'ECA234G1607' => 'eca', 'ECA246G0932' => 'eca', 'ECA247G0781' => 'eca', 'ECA247G1932' => 'eca', 'ECA247G2079' => 'eca', 'ECA247G3338' => 'eca', 'ECA247G4115' => 'eca', 'EL10Ac3g06552' => 'bvu', 'EL10Ac5g10721' => 'bvu', 'EL10Ac5g10722' => 'bvu', 'EL10Ac5g10723' => 'bvu', 'EL10Ac5g11361' => 'bvu', 'EL10Ac6g13553' => 'bvu', 'EL10As8g23872' => 'bvu', 'Eucgr.B00250' => 'egr', 'Eucgr.B00251' => 'egr', 'Eucgr.B03533' => 'egr', 'Eucgr.I02381' => 'egr', 'Eucgr.K02700' => 'egr', 'FAN02G0174' => 'fan', 'FAN02G3146' => 'fan', 'FAN04G1672' => 'fan', 'FAN04G2273' => 'fan', 'FAN05G2791' => 'fan', 'FAN05G4035' => 'fan', 'FAN07G0834' => 'fan', 'FAN08G1198' => 'fan', 'FAN09G4182' => 'fan', 'FAN12G0496' => 'fan', 'FAN13G1027' => 'fan', 'FAN13G2951' => 'fan', 'FAN14G0705' => 'fan', 'FAN14G0720' => 'fan', 'FAN17G0201' => 'fan', 'FAN17G2665' => 'fan', 'FAN18G1456' => 'fan', 'FAN18G1525' => 'fan', 'FAN18G3500' => 'fan', 'FAN28G2670' => 'fan', 'FvH4_1g12391' => 'fve', 'FvH4_4g23220' => 'fve', 'FvH4_5g08810' => 'fve', 'FvH4_5g28960' => 'fve', 'FvH4_6g42820' => 'fve', 'FvH4_6g51110' => 'fve', 'Glyma.02G051802' => 'gma', 'Glyma.04G185300' => 'gma', 'Glyma.05G202900' => 'gma', 'Glyma.08G010300' => 'gma', 'Glyma.16G131900' => 'gma', 'Glyma.17G087900' => 'gma', 'Gohir.A07G048600' => 'ghi', 'Gohir.A11G179000' => 'ghi', 'Gohir.A12G140900' => 'ghi', 'Gohir.A12G140950' => 'ghi', 'Gohir.A12G191700' => 'ghi', 'Gohir.A13G086300' => 'ghi', 'Gohir.D07G052900' => 'ghi', 'Gohir.D11G186600' => 'ghi', 'Gohir.D12G145575' => 'ghi', 'Gohir.D12G145650' => 'ghi', 'Gohir.D12G145725' => 'ghi', 'Gohir.D12G194050' => 'ghi', 'Gohir.D13G091800' => 'ghi', 'Gorai.001G055900' => 'gra', 'Gorai.007G198400' => 'gra', 'Gorai.008G157000' => 'gra', 'Gorai.008G157100' => 'gra', 'Gorai.008G208700' => 'gra', 'Gorai.010G138700' => 'gra', 'GSVIVG01000977001' => 'vvi', 'GSVIVG01007708001' => 'vvi', 'GSVIVG01008587001' => 'vvi', 'GSVIVG01018849001' => 'vvi', 'GSVIVG01032432001' => 'vvi', 'HanXRQChr02g0034131' => 'han', 'HanXRQChr02g0035981' => 'han', 'HanXRQChr02g0035991' => 'han', 'HanXRQChr05g0155611' => 'han', 'HanXRQChr05g0155621' => 'han', 'HanXRQChr08g0236501' => 'han', 'HanXRQChr09g0261321' => 'han', 'HanXRQChr09g0272081' => 'han', 'HanXRQChr10g0310741' => 'han', 'HanXRQChr11g0325591' => 'han', 'HanXRQChr12g0385691' => 'han', 'HanXRQChr13g0387801' => 'han', 'HanXRQChr15g0463011' => 'han', 'Haze_03826' => 'cav', 'Haze_03827' => 'cav', 'Haze_07183' => 'cav', 'Haze_07537' => 'cav', 'Haze_07539' => 'cav', 'Haze_12461' => 'cav', 'Haze_16115' => 'cav', 'Haze_16808' => 'cav', 'Haze_18531' => 'cav', 'Hma1.2p1_0046F.1_g026700' => 'hma', 'Hma1.2p1_0046F.1_g026710' => 'hma', 'Hma1.2p1_0168F.1_g074340' => 'hma', 'Hma1.2p1_0266F.1_g107030' => 'hma', 'Hma1.2p1_0266F.1_g107060' => 'hma', 'Hma1.2p1_0275F.1_g110510' => 'hma', 'Hma1.2p1_0592F.1_g185490' => 'hma', 'Hma1.2p1_0592F.1_g185500' => 'hma', 'Hma1.2p1_0592F.1_g185510' => 'hma', 'Hma1.2p1_0592F.1_g185520' => 'hma', 'Hma1.2p1_0592F.1_g185530' => 'hma', 'Hma1.2p1_0818F.1_g223450' => 'hma', 'HPP92_009708' => 'vpl', 'HPP92_009793' => 'vpl', 'HPP92_009796' => 'vpl', 'HPP92_009797' => 'vpl', 'HPP92_014940' => 'vpl', 'HPP92_014988' => 'vpl', 'Hund02463' => 'sun', 'Hund02760' => 'sun', 'Hund05071' => 'sun', 'Hund10108' => 'sun', 'Hund11204' => 'sun', 'Hund14016' => 'sun', 'Hund16464' => 'sun', 'Lalb_Chr09g0333391' => 'lal', 'Lalb_Chr11g0070461' => 'lal', 'Lalb_Chr12g0201671' => 'lal', 'Lalb_Chr13g0297161' => 'lal', 'Lj1g0002823' => 'lja', 'Lj3C1074T6' => 'lonja', 'Lj4A212T28' => 'lonja', 'Lj4g0005516' => 'lja', 'Lj4g0013705' => 'lja', 'Lj4g0027865' => 'lja', 'Lj5C92G16' => 'lonja', 'Lj5C92T12' => 'lonja', 'Lj7C596T3' => 'lonja', 'Lj9A446G59' => 'lonja', 'Lj9A482G21' => 'lonja', 'Lsat_1_v5_gn_1_28261' => 'lsa', 'Lsat_1_v5_gn_1_28281' => 'lsa', 'Lsat_1_v5_gn_1_32721' => 'lsa', 'Lsat_1_v5_gn_4_151760' => 'lsa', 'Lsat_1_v5_gn_4_2120' => 'lsa', 'Lsat_1_v5_gn_4_75761' => 'lsa', 'Lsat_1_v5_gn_5_10920' => 'lsa', 'Manes.02G099900' => 'mes', 'Manes.11G096200' => 'mes', 'Manes.12G007200' => 'mes', 'Manes.14G048300' => 'mes', 'Manes.17G114700' => 'mes', 'Mapoly0002s0070' => 'mpo', 'Mapoly0029s0099' => 'mpo', 'MBI07_g24742_MAGBIO' => 'mbi', 'MBI10_g27988_MAGBIO' => 'mbi', 'MBI11_g13057_MAGBIO' => 'mbi', 'MD02G1137200' => 'mdo', 'MD06G1137200' => 'mdo', 'MD07G1122300' => 'mdo', 'MD09G1078200' => 'mdo', 'MD13G1123700' => 'mdo', 'MD14G1151900' => 'mdo', 'MD17G1030900' => 'mdo', 'MD17G1068200' => 'mdo', 'MD17G1068600' => 'mdo', 'Medtr3g077540' => 'mtr', 'Medtr4g105530' => 'mtr', 'Medtr8g076580' => 'mtr', 'Medtr8g076590' => 'mtr', 'Medtr8g096410' => 'mtr', 'MELO3C016411.2' => 'cme', 'MELO3C017780.2' => 'cme', 'MELO3C022560.2' => 'cme', 'MELO3C026187.2' => 'cme', 'MELO3C026286.2' => 'cme', 'MELO3C032854.2' => 'cme', 'Migut.H02495' => 'egut', 'Migut.I00561' => 'egut', 'Migut.K01015' => 'egut', 'Migut.K01016' => 'egut', 'Migut.L00743' => 'egut', 'Migut.L00744' => 'egut', 'Migut.L00746' => 'egut', 'Migut.L00798' => 'egut', 'Migut.L00799' => 'egut', 'Migut.N02096' => 'egut', 'MSTRG.11259' => 'ama', 'MSTRG.23142' => 'ama', 'MSTRG.2499' => 'ama', 'Nitab4.5_0000003g0730' => 'nta', 'Nitab4.5_0000137g0020' => 'nta', 'Nitab4.5_0000721g0210' => 'nta', 'Nitab4.5_0000723g0050' => 'nta', 'Nitab4.5_0000913g0070' => 'nta', 'Nitab4.5_0001332g0040' => 'nta', 'Nitab4.5_0001771g0050' => 'nta', 'Nitab4.5_0001918g0050' => 'nta', 'Nitab4.5_0002686g0030' => 'nta', 'Nitab4.5_0003156g0020' => 'nta', 'Nitab4.5_0003383g0040' => 'nta', 'Nitab4.5_0003918g0010' => 'nta', 'Nitab4.5_0006760g0010' => 'nta', 'Nn1g05981' => 'nnu', 'Nn1g06288' => 'nnu', 'Nn3g16371' => 'nnu', 'Nn3g16786' => 'nnu', 'Nn4g22232' => 'nnu', 'Oeu005144.1' => 'oeu', 'Oeu005145.1' => 'oeu', 'Oeu011348.1' => 'oeu', 'Oeu016415.1' => 'oeu', 'Oeu023501.1' => 'oeu', 'Oeu044473.1' => 'oeu', 'Oeu048892.2' => 'oeu', 'Os01g0549200' => 'osa', 'Os02g0469300' => 'osa', 'Os04g0311100' => 'osa', 'Os06g0474900' => 'osa', 'Os10g0181700' => 'osa', 'Os11g0454800' => 'osa', 'Peaxi162Scf00037g00714' => 'pax', 'Peaxi162Scf00084g01217' => 'pax', 'Peaxi162Scf00257g00217' => 'pax', 'Peaxi162Scf00516g00215' => 'pax', 'Peaxi162Scf00689g00123' => 'pax', 'PGR044G2719' => 'pgr', 'PGR083G1360' => 'pgr', 'PGR102G2849' => 'pgr', 'PGR119G2534' => 'pgr', 'PGSC0003DMG400003538' => 'stu', 'PGSC0003DMG400028138' => 'stu', 'PGSC0003DMG400031732' => 'stu', 'PGSC0003DMG400038165' => 'stu', 'Phvul.002G284600' => 'pvu', 'Phvul.003G258200' => 'pvu', 'Phvul.009G176500' => 'pvu', 'Potri.003G167201' => 'ptr', 'Potri.005G118400' => 'ptr', 'Potri.012G089000' => 'ptr', 'Potri.012G102800' => 'ptr', 'Potri.015G079400' => 'ptr', 'Potri.015G100900' => 'ptr', 'Pp3c14_9810' => 'ppa', 'Pp3c15_10450' => 'ppa', 'Pp3c20_19150' => 'ppa', 'Pp3c23_12740' => 'ppa', 'Pp3c23_6310' => 'ppa', 'Pp3c24_3720' => 'ppa', 'Pp3c27_2580' => 'ppa', 'Pp3c9_8990' => 'ppa', 'PRCOL_00002854' => 'pco', 'Prupe.1G221200' => 'ppe', 'Prupe.3G289000' => 'ppe', 'Prupe.5G147000' => 'ppe', 'Prupe.6G157300' => 'ppe', 'Prupe.7G163400' => 'ppe', 'Psat0s2177g0040' => 'psa', 'Psat3g174760' => 'psa', 'Psat3g192160' => 'psa', 'Psat4g058520' => 'psa', 'Psat4g096840' => 'psa', 'Psat7g037320' => 'psa', 'PSO017G1274' => 'pso', 'PSO017G5166' => 'pso', 'PSO063G4558' => 'pso', 'PSO170G4458' => 'pso', 'PSO170G5005' => 'pso', 'PSO210G6156' => 'pso', 'PSO210G6635' => 'pso', 'PSO210G7397' => 'pso', 'PSO210G7700' => 'pso', 'PSO455G0035' => 'pso', 'PSO455G0180' => 'pso', 'PSO478G4515' => 'pso', 'PSO832G1305' => 'pso', 'PSO832G3489' => 'pso', 'QL02p075247' => 'qlo', 'QL03p051148' => 'qlo', 'QL05p010313' => 'qlo', 'QL06p034627' => 'qlo', 'QL10p001889' => 'qlo', 'QL10p010846' => 'qlo', 'RcHm_v2.0_Chr1g0350621' => 'rch', 'RcHm_v2.0_Chr1g0350641' => 'rch', 'RcHm_v2.0_Chr2g0092891' => 'rch', 'RcHm_v2.0_Chr2g0100251' => 'rch', 'RcHm_v2.0_Chr2g0158661' => 'rch', 'RcHm_v2.0_Chr2g0172741' => 'rch', 'RcHm_v2.0_Chr4g0429571' => 'rch', 'RcHm_v2.0_Chr5g0042471' => 'rch', 'RcHm_v2.0_Chr7g0189451' => 'rch', 'Rhsim08G0052000' => 'rsi', 'Rhsim08G0174400' => 'rsi', 'Rhsim08G0193200' => 'rsi', 'Rhsim10G0214800' => 'rsi', 'Rhsim10G0214900' => 'rsi', 'Rhsim10G0215000' => 'rsi', 'Rhsim12G0022900' => 'rsi', 'Rhsim12G0177500' => 'rsi', 'Rhsim12G0177700' => 'rsi', 'Sabra03G0122600' => 'sbr', 'Sabra05G0097400' => 'sbr', 'Sabra12G0064100' => 'sbr', 'Sabra15G0121300' => 'sbr', 'SalBow2G0642' => 'sbo', 'SalBow5G2667' => 'sbo', 'SalBow5G4873' => 'sbo', 'SalBow8G2395' => 'sbo', 'Sc03g0003290' => 'sci', 'Sc10g0010130' => 'sci', 'Sc22g0003650' => 'sci', 'Sed0001603' => 'sed', 'Sed0004259' => 'sed', 'Sed0006789' => 'sed', 'Sed0011838' => 'sed', 'Sed0012964' => 'sed', 'Sed0016383' => 'sed', 'Sed0019010' => 'sed', 'Sed0020188' => 'sed', 'SEGI_04702' => 'sgi', 'SEGI_17231' => 'sgi', 'SEGI_18877' => 'sgi', 'SEGI_25196' => 'sgi', 'SEGI_25515' => 'sgi', 'SEGI_28445' => 'sgi', 'SEGI_37452' => 'sgi', 'SGA_v2.0_scaffold188G40336' => 'sas', 'SGA_v2.0_scaffold228G43247' => 'sas', 'SGA_v2.0_scaffold280G46853' => 'sas', 'SGA_v2.0_scaffold34G13808' => 'sas', 'SGA_v2.0_scaffold40G15576' => 'sas', 'SGA_v2.0_scaffold611G53188' => 'sas', 'SGA_v2.0_scaffold78G25461' => 'sas', 'SGA_v2.0_scaffold90G27888' => 'sas', 'SHI08601' => 'shi', 'SHI08606' => 'shi', 'SHI17117' => 'shi', 'SHI17119' => 'shi', 'SMO118G0201' => 'smo', 'SMO169G0247' => 'smo', 'SMO176G0006' => 'smo', 'SMO176G0015' => 'smo', 'SMO202G0006' => 'smo', 'SMO240G0050' => 'smo', 'SMO286G0009' => 'smo', 'SMO338G0033' => 'smo', 'SMO356G0533' => 'smo', 'SMO364G0382' => 'smo', 'SMO367G0166' => 'smo', 'SMO367G1098' => 'smo', 'Solyc01g009920.3' => 'sly', 'Solyc01g099300.3' => 'sly', 'Solyc02g084700.3' => 'sly', 'Solyc03g097520.3' => 'sly', 'Solyc06g071580.3' => 'sly', 'Solyc10g081760.3' => 'sly', 'Sopen01g005480' => 'spe', 'Sopen01g042850' => 'spe', 'Sopen02g029370' => 'spe', 'Sopen03g028280' => 'spe', 'Sopen06g027870' => 'spe', 'Sopen10g032270' => 'spe', 'Sp5g18180' => 'spa', 'Sp6g12880' => 'spa', 'Sp6g30850' => 'spa', 'Sp7g22960' => 'spa', 'Sp7g34010' => 'spa', 'SpUn1326_0010' => 'spa', 'TAR371G0242' => 'tar', 'TAR622G0638' => 'tar', 'TAR628G1548' => 'tar', 'TAR629G1079' => 'tar', 'TAR629G3413' => 'tar', 'THA.LOC104804249' => 'tha', 'THA.LOC104808315' => 'tha', 'THA.LOC104809238' => 'tha', 'THA.LOC104825484' => 'tha', 'Thecc.01G025500' => 'tca', 'Thecc.03G015800' => 'tca', 'Thecc.03G018000' => 'tca', 'Thecc.03G134800' => 'tca', 'Thecc.04G014700' => 'tca', 'Thhalv10006991m.g' => 'esa', 'Thhalv10012707m.g' => 'esa', 'Thhalv10015739m.g' => 'esa', 'Thhalv10024553m.g' => 'esa', 'Thhalv10024673m.g' => 'esa', 'Thhalv10029187m.g' => 'esa', 'TPR.G12971' => 'tpr', 'TPR.G29396' => 'tpr', 'TPR.G33376' => 'tpr', 'TPR.G35508' => 'tpr', 'TPR.G35516' => 'tpr', 'TPR.G37317' => 'tpr', 'TPR.G37389' => 'tpr', 'TPR.G37523' => 'tpr', 'TPR.G559' => 'tpr', 'TWI14G0070' => 'twi', 'TWI14G0729' => 'twi', 'TWI18G0596' => 'twi', 'TWI39G0780' => 'twi', 'TWI39G0850' => 'twi', 'TWI73G1052' => 'twi', 'unitig_52.g17485' => 'ugi', 'unitig_61.g26355' => 'ugi', 'vmacro01040' => 'vma', 'vmacro16731' => 'vma', 'vmacro18270' => 'vma', 'vmacro19142' => 'vma', 'vmacro19407' => 'vma', 'vmacro19408' => 'vma', 'vmacro21899' => 'vma', 'vmacro21900' => 'vma', 'vmacro21901' => 'vma', 'VMungo0251G0490' => 'vmu', 'VMungo0251G1748' => 'vmu', 'VMungo1309G0421' => 'vmu', 'Zm00001eb086500' => 'zma', 'Zm00001eb150680' => 'zma', 'Zm00001eb162330' => 'zma', 'Zm00001eb203130' => 'zma', 'Zm00001eb369480' => 'zma', 'Zm00001eb382340' => 'zma', 'Zm00001eb416360' => 'zma' ), 'gf_id' => 'HOM05D000902', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000902' ), 'data_identifier' => 'HOM05D000902', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000902', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '663', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02470' => 'bna', 'A01p16260' => 'bna', 'A02p01680' => 'bna', 'A03p16600' => 'bna', 'A03p55660' => 'bna', 'A03p64160' => 'bna', 'A03p64170' => 'bna', 'A08p31900' => 'bna', 'A09p59530' => 'bna', 'A10p08230' => 'bna', 'A10p25090' => 'bna', 'Aa31LG3G7100' => 'aar', 'Aa31LG3G7110' => 'aar', 'Aa31LG6G13160' => 'aar', 'Aa31LG7G10770' => 'aar', 'Aa31LG7G3830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2723' => 'aag', 'Actinidia08045' => 'ach', 'Actinidia08888' => 'ach', 'Actinidia18333' => 'ach', 'Actinidia19334' => 'ach', 'Actinidia25552' => 'ach', 'Actinidia26089' => 'ach', 'Actinidia30615' => 'ach', 'Actinidia30616' => 'ach', 'Actinidia33083' => 'ach', 'Actinidia35762' => 'ach', 'Ah.02g110620' => 'amhyb', 'Ah.11g046390' => 'amhyb', 'AL1G31670' => 'aly', 'AL6G23730' => 'aly', 'AL7G14740' => 'aly', 'AL7G14750' => 'aly', 'AL7G14760' => 'aly', 'AL7G28220' => 'aly', 'AL8G24940' => 'aly', 'Aqoxy3G01665' => 'aox', 'Aqoxy3G02853' => 'aox', 'Aqoxy5G01513' => 'aox', 'Aqoxy5G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8SKA4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ75LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKDA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0LJZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7REX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZP4YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWX7I5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2QKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS0L9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPCD8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q161UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC7XCF' => 'arhy', 'AT1G19100' => 'ath', 'AT4G24970' => 'ath', 'AT4G36270' => 'ath', 'AT4G36280' => 'ath', 'AT4G36290' => 'ath', 'AT5G13130' => 'ath', 'AT5G50780' => 'ath', 'ATR0582G266' => 'atr', 'ATR0661G195' => 'atr', 'ATR1152G031' => 'atr', 'Atru.chr11.2382' => 'acertr', 'Atru.chr12.2337' => 'acertr', 'Atru.chr3.744' => 'acertr', 'Atru.chr6.1870' => 'acertr', 'Atru.chr9.2515' => 'acertr', 'AUR62004120' => 'cqu', 'AUR62005667' => 'cqu', 'AUR62007634' => 'cqu', 'AUR62008186' => 'cqu', 'AUR62008187' => 'cqu', 'AUR62008188' => 'cqu', 'AUR62027954' => 'cqu', 'AUR62028766' => 'cqu', 'AUR62028767' => 'cqu', 'AUR62028768' => 'cqu', 'AUR62028886' => 'cqu', 'AUR62029563' => 'cqu', 'AUR62038832' => 'cqu', 'BcaB01g04149' => 'bca', 'BcaB03g12940' => 'bca', 'BcaB03g13090' => 'bca', 'BcaB03g14466' => 'bca', 'BcaB05g24035' => 'bca', 'BcaC01g06050' => 'bca', 'BcaC04g19148' => 'bca', 'BcaC04g20761' => 'bca', 'BcaC06g32845' => 'bca', 'BcaC07g41274' => 'bca', 'BcaC09g50827' => 'bca', 'BcaNung00741' => 'bca', 'BcaNung00742' => 'bca', 'BcaNung01859' => 'bca', 'BcaNung03985' => 'bca', 'BcaNung03989' => 'bca', 'BcaNung05661' => 'bca', 'BolC1t00257H' => 'bol', 'BolC1t01956H' => 'bol', 'BolC2t06534H' => 'bol', 'BolC3t14334H' => 'bol', 'BolC5t30451H' => 'bol', 'BolC7t45880H' => 'bol', 'BolC7t46586H' => 'bol', 'BolC8t49301H' => 'bol', 'BolC8t51837H' => 'bol', 'BolC9t56822H' => 'bol', 'BolC9t59235H' => 'bol', 'BraA01t00234Z' => 'bra', 'BraA01t01563Z' => 'bra', 'BraA02t05147Z' => 'bra', 'BraA03t10947Z' => 'bra', 'BraA03t14633Z' => 'bra', 'BraA08t35112Z' => 'bra', 'BraA09t41330Z' => 'bra', 'BraA10t44570Z' => 'bra', 'C01p02670' => 'bna', 'C01p20260' => 'bna', 'C02p05890' => 'bna', 'C03p19530' => 'bna', 'C05p17470' => 'bna', 'C07p53900' => 'bna', 'C07p61630' => 'bna', 'C08p16800' => 'bna', 'C08p42810' => 'bna', 'C09p39480' => 'bna', 'C09p63980' => 'bna', 'CAN.G1001.7' => 'can', 'CAN.G1034.55' => 'can', 'CAN.G143.7' => 'can', 'CAN.G3340.1' => 'can', 'CAN.G358.19' => 'can', 'CAN.G373.2' => 'can', 'CAN.G674.16' => 'can', 'CAN.G674.17' => 'can', 'CAN.G674.18' => 'can', 'CAN.G732.2' => 'can', 'CAN.G732.3' => 'can', 'CAN.G993.39' => 'can', 'CANSAT01G2052' => 'cansat', 'CANSAT80G0070' => 'cansat', 'CANSAT80G0483' => 'cansat', 'CANSAT80G0625' => 'cansat', 'CARHR019690' => 'chi', 'CARHR080280' => 'chi', 'CARHR152750' => 'chi', 'CARHR152760' => 'chi', 'CARHR152770' => 'chi', 'CARHR200340' => 'chi', 'CARHR232370' => 'chi', 'CARHR244670' => 'chi', 'CARHR244680' => 'chi', 'CARHR257520' => 'chi', 'Carub.0001s1872' => 'cru', 'Carub.0006s1130' => 'cru', 'Carub.0007s0396' => 'cru', 'Carub.0007s0397' => 'cru', 'Carub.0007s1608' => 'cru', 'Carub.0008s1068' => 'cru', 'Carub.0008s1077' => 'cru', 'Ca_16158_v3' => 'car', 'Ca_17571_v3' => 'car', 'Ca_21936_v3' => 'car', 'Ca_22350_v3' => 'car', 'CBR_g22445' => 'cbr', 'CBR_g26290' => 'cbr', 'Cc04_g09610' => 'ccan', 'Cc04_g12280' => 'ccan', 'Cc07_g10230' => 'ccan', 'CDE02G0093' => 'cde', 'CDE02G0701' => 'cde', 'CDE04G1050' => 'cde', 'CDE05G1833' => 'cde', 'CDE05G3058' => 'cde', 'CDE05G3380' => 'cde', 'CDE06G0536' => 'cde', 'Cfa006923' => 'cfa', 'Cfa009402' => 'cfa', 'Cfa018751' => 'cfa', 'Cfa019164' => 'cfa', 'Cfa022935' => 'cfa', 'Ciclev10019081m.g' => 'ccl', 'Ciclev10025076m.g' => 'ccl', 'Ciclev10030712m.g' => 'ccl', 'Ciclev10033760m.g' => 'ccl', 'CiPaw.05G105600' => 'cil', 'CiPaw.08G136700' => 'cil', 'CiPaw.11G003900' => 'cil', 'CiPaw.11G023700' => 'cil', 'CiPaw.12G003700' => 'cil', 'ClCG06G017100' => 'cla', 'ClCG06G018110' => 'cla', 'ClCG07G008800' => 'cla', 'ClCG07G015330' => 'cla', 'COL.COLO4_13698' => 'col', 'COL.COLO4_16659' => 'col', 'COL.COLO4_21986' => 'col', 'COL.COLO4_24049' => 'col', 'COL.COLO4_29061' => 'col', 'COL.COLO4_29075' => 'col', 'COL.COLO4_30094' => 'col', 'Cpa.g.c33689' => 'cpa', 'Cpa.g.sc108.39' => 'cpa', 'Cpa.g.sc108.41' => 'cpa', 'Cpa.g.sc1163.1' => 'cpa', 'Cpa.g.sc4.155' => 'cpa', 'Cpa.g.sc6.194' => 'cpa', 'CsaV3_1G000340' => 'csa', 'CsaV3_1G001400' => 'csa', 'CsaV3_4G002220' => 'csa', 'CsaV3_4G005370' => 'csa', 'CSS0007487' => 'camsi', 'CSS0008066' => 'camsi', 'CSS0009120' => 'camsi', 'CSS0015512' => 'camsi', 'CSS0022409' => 'camsi', 'CSS0025358' => 'camsi', 'CSS0044547' => 'camsi', 'DCAR_013057' => 'dca', 'DCAR_015058' => 'dca', 'DCAR_016027' => 'dca', 'DCAR_017327' => 'dca', 'DCAR_020743' => 'dca', 'DCAR_026157' => 'dca', 'DCAR_032339' => 'dca', 'DCAR_032340' => 'dca', 'Dinv11200' => 'din', 'Dinv11201' => 'din', 'Dinv20631' => 'din', 'Dinv23182' => 'din', 'Dinv33466' => 'din', 'Dinv33583' => 'din', 'Dinv38565' => 'din', 'Duzib068G0200' => 'dzi', 'Duzib147G0132' => 'dzi', 'Duzib147G0635' => 'dzi', 'Duzib205G1670' => 'dzi', 'Duzib251G0606' => 'dzi', 'ECA232G3336' => 'eca', 'ECA232G3763' => 'eca', 'ECA232G4845' => 'eca', 'ECA234G1607' => 'eca', 'ECA246G0932' => 'eca', 'ECA247G0781' => 'eca', 'ECA247G1932' => 'eca', 'ECA247G2079' => 'eca', 'ECA247G3338' => 'eca', 'ECA247G4115' => 'eca', 'EL10Ac3g06552' => 'bvu', 'EL10Ac5g10721' => 'bvu', 'EL10Ac5g10722' => 'bvu', 'EL10Ac5g10723' => 'bvu', 'EL10Ac5g11361' => 'bvu', 'EL10Ac6g13553' => 'bvu', 'EL10As8g23872' => 'bvu', 'Eucgr.B00250' => 'egr', 'Eucgr.B00251' => 'egr', 'Eucgr.B03533' => 'egr', 'Eucgr.I02381' => 'egr', 'Eucgr.K02700' => 'egr', 'FAN02G0174' => 'fan', 'FAN02G3146' => 'fan', 'FAN04G1672' => 'fan', 'FAN04G2273' => 'fan', 'FAN05G2791' => 'fan', 'FAN05G4035' => 'fan', 'FAN07G0834' => 'fan', 'FAN08G1198' => 'fan', 'FAN09G4182' => 'fan', 'FAN12G0496' => 'fan', 'FAN13G1027' => 'fan', 'FAN13G2951' => 'fan', 'FAN14G0705' => 'fan', 'FAN14G0720' => 'fan', 'FAN17G0201' => 'fan', 'FAN17G2665' => 'fan', 'FAN18G1456' => 'fan', 'FAN18G1525' => 'fan', 'FAN18G3500' => 'fan', 'FAN28G2670' => 'fan', 'FvH4_1g12391' => 'fve', 'FvH4_4g23220' => 'fve', 'FvH4_5g08810' => 'fve', 'FvH4_5g28960' => 'fve', 'FvH4_6g42820' => 'fve', 'FvH4_6g51110' => 'fve', 'Glyma.02G051802' => 'gma', 'Glyma.04G185300' => 'gma', 'Glyma.05G202900' => 'gma', 'Glyma.08G010300' => 'gma', 'Glyma.16G131900' => 'gma', 'Glyma.17G087900' => 'gma', 'Gohir.A07G048600' => 'ghi', 'Gohir.A11G179000' => 'ghi', 'Gohir.A12G140900' => 'ghi', 'Gohir.A12G140950' => 'ghi', 'Gohir.A12G191700' => 'ghi', 'Gohir.A13G086300' => 'ghi', 'Gohir.D07G052900' => 'ghi', 'Gohir.D11G186600' => 'ghi', 'Gohir.D12G145575' => 'ghi', 'Gohir.D12G145650' => 'ghi', 'Gohir.D12G145725' => 'ghi', 'Gohir.D12G194050' => 'ghi', 'Gohir.D13G091800' => 'ghi', 'Gorai.001G055900' => 'gra', 'Gorai.007G198400' => 'gra', 'Gorai.008G157000' => 'gra', 'Gorai.008G157100' => 'gra', 'Gorai.008G208700' => 'gra', 'Gorai.010G138700' => 'gra', 'GSVIVG01000977001' => 'vvi', 'GSVIVG01007708001' => 'vvi', 'GSVIVG01008587001' => 'vvi', 'GSVIVG01018849001' => 'vvi', 'GSVIVG01032432001' => 'vvi', 'HanXRQChr02g0034131' => 'han', 'HanXRQChr02g0035981' => 'han', 'HanXRQChr02g0035991' => 'han', 'HanXRQChr05g0155611' => 'han', 'HanXRQChr05g0155621' => 'han', 'HanXRQChr08g0236501' => 'han', 'HanXRQChr09g0261321' => 'han', 'HanXRQChr09g0272081' => 'han', 'HanXRQChr10g0310741' => 'han', 'HanXRQChr11g0325591' => 'han', 'HanXRQChr12g0385691' => 'han', 'HanXRQChr13g0387801' => 'han', 'HanXRQChr15g0463011' => 'han', 'Haze_03826' => 'cav', 'Haze_03827' => 'cav', 'Haze_07183' => 'cav', 'Haze_07537' => 'cav', 'Haze_07539' => 'cav', 'Haze_12461' => 'cav', 'Haze_16115' => 'cav', 'Haze_16808' => 'cav', 'Haze_18531' => 'cav', 'Hma1.2p1_0046F.1_g026700' => 'hma', 'Hma1.2p1_0046F.1_g026710' => 'hma', 'Hma1.2p1_0168F.1_g074340' => 'hma', 'Hma1.2p1_0266F.1_g107030' => 'hma', 'Hma1.2p1_0266F.1_g107060' => 'hma', 'Hma1.2p1_0275F.1_g110510' => 'hma', 'Hma1.2p1_0592F.1_g185490' => 'hma', 'Hma1.2p1_0592F.1_g185500' => 'hma', 'Hma1.2p1_0592F.1_g185510' => 'hma', 'Hma1.2p1_0592F.1_g185520' => 'hma', 'Hma1.2p1_0592F.1_g185530' => 'hma', 'Hma1.2p1_0818F.1_g223450' => 'hma', 'HPP92_009708' => 'vpl', 'HPP92_009793' => 'vpl', 'HPP92_009796' => 'vpl', 'HPP92_009797' => 'vpl', 'HPP92_014940' => 'vpl', 'HPP92_014988' => 'vpl', 'Hund02463' => 'sun', 'Hund02760' => 'sun', 'Hund05071' => 'sun', 'Hund10108' => 'sun', 'Hund11204' => 'sun', 'Hund14016' => 'sun', 'Hund16464' => 'sun', 'Lalb_Chr09g0333391' => 'lal', 'Lalb_Chr11g0070461' => 'lal', 'Lalb_Chr12g0201671' => 'lal', 'Lalb_Chr13g0297161' => 'lal', 'Lj1g0002823' => 'lja', 'Lj3C1074T6' => 'lonja', 'Lj4A212T28' => 'lonja', 'Lj4g0005516' => 'lja', 'Lj4g0013705' => 'lja', 'Lj4g0027865' => 'lja', 'Lj5C92G16' => 'lonja', 'Lj5C92T12' => 'lonja', 'Lj7C596T3' => 'lonja', 'Lj9A446G59' => 'lonja', 'Lj9A482G21' => 'lonja', 'Lsat_1_v5_gn_1_28261' => 'lsa', 'Lsat_1_v5_gn_1_28281' => 'lsa', 'Lsat_1_v5_gn_1_32721' => 'lsa', 'Lsat_1_v5_gn_4_151760' => 'lsa', 'Lsat_1_v5_gn_4_2120' => 'lsa', 'Lsat_1_v5_gn_4_75761' => 'lsa', 'Lsat_1_v5_gn_5_10920' => 'lsa', 'Manes.02G099900' => 'mes', 'Manes.11G096200' => 'mes', 'Manes.12G007200' => 'mes', 'Manes.14G048300' => 'mes', 'Manes.17G114700' => 'mes', 'Mapoly0002s0070' => 'mpo', 'Mapoly0029s0099' => 'mpo', 'MBI07_g24742_MAGBIO' => 'mbi', 'MBI10_g27988_MAGBIO' => 'mbi', 'MBI11_g13057_MAGBIO' => 'mbi', 'MD02G1137200' => 'mdo', 'MD06G1137200' => 'mdo', 'MD07G1122300' => 'mdo', 'MD09G1078200' => 'mdo', 'MD13G1123700' => 'mdo', 'MD14G1151900' => 'mdo', 'MD17G1030900' => 'mdo', 'MD17G1068200' => 'mdo', 'MD17G1068600' => 'mdo', 'Medtr3g077540' => 'mtr', 'Medtr4g105530' => 'mtr', 'Medtr8g076580' => 'mtr', 'Medtr8g076590' => 'mtr', 'Medtr8g096410' => 'mtr', 'MELO3C016411.2' => 'cme', 'MELO3C017780.2' => 'cme', 'MELO3C022560.2' => 'cme', 'MELO3C026187.2' => 'cme', 'MELO3C026286.2' => 'cme', 'MELO3C032854.2' => 'cme', 'Migut.H02495' => 'egut', 'Migut.I00561' => 'egut', 'Migut.K01015' => 'egut', 'Migut.K01016' => 'egut', 'Migut.L00743' => 'egut', 'Migut.L00744' => 'egut', 'Migut.L00746' => 'egut', 'Migut.L00798' => 'egut', 'Migut.L00799' => 'egut', 'Migut.N02096' => 'egut', 'MSTRG.11259' => 'ama', 'MSTRG.23142' => 'ama', 'MSTRG.2499' => 'ama', 'Nitab4.5_0000003g0730' => 'nta', 'Nitab4.5_0000137g0020' => 'nta', 'Nitab4.5_0000721g0210' => 'nta', 'Nitab4.5_0000723g0050' => 'nta', 'Nitab4.5_0000913g0070' => 'nta', 'Nitab4.5_0001332g0040' => 'nta', 'Nitab4.5_0001771g0050' => 'nta', 'Nitab4.5_0001918g0050' => 'nta', 'Nitab4.5_0002686g0030' => 'nta', 'Nitab4.5_0003156g0020' => 'nta', 'Nitab4.5_0003383g0040' => 'nta', 'Nitab4.5_0003918g0010' => 'nta', 'Nitab4.5_0006760g0010' => 'nta', 'Nn1g05981' => 'nnu', 'Nn1g06288' => 'nnu', 'Nn3g16371' => 'nnu', 'Nn3g16786' => 'nnu', 'Nn4g22232' => 'nnu', 'Oeu005144.1' => 'oeu', 'Oeu005145.1' => 'oeu', 'Oeu011348.1' => 'oeu', 'Oeu016415.1' => 'oeu', 'Oeu023501.1' => 'oeu', 'Oeu044473.1' => 'oeu', 'Oeu048892.2' => 'oeu', 'Os01g0549200' => 'osa', 'Os02g0469300' => 'osa', 'Os04g0311100' => 'osa', 'Os06g0474900' => 'osa', 'Os10g0181700' => 'osa', 'Os11g0454800' => 'osa', 'Peaxi162Scf00037g00714' => 'pax', 'Peaxi162Scf00084g01217' => 'pax', 'Peaxi162Scf00257g00217' => 'pax', 'Peaxi162Scf00516g00215' => 'pax', 'Peaxi162Scf00689g00123' => 'pax', 'PGR044G2719' => 'pgr', 'PGR083G1360' => 'pgr', 'PGR102G2849' => 'pgr', 'PGR119G2534' => 'pgr', 'PGSC0003DMG400003538' => 'stu', 'PGSC0003DMG400028138' => 'stu', 'PGSC0003DMG400031732' => 'stu', 'PGSC0003DMG400038165' => 'stu', 'Phvul.002G284600' => 'pvu', 'Phvul.003G258200' => 'pvu', 'Phvul.009G176500' => 'pvu', 'Potri.003G167201' => 'ptr', 'Potri.005G118400' => 'ptr', 'Potri.012G089000' => 'ptr', 'Potri.012G102800' => 'ptr', 'Potri.015G079400' => 'ptr', 'Potri.015G100900' => 'ptr', 'Pp3c14_9810' => 'ppa', 'Pp3c15_10450' => 'ppa', 'Pp3c20_19150' => 'ppa', 'Pp3c23_12740' => 'ppa', 'Pp3c23_6310' => 'ppa', 'Pp3c24_3720' => 'ppa', 'Pp3c27_2580' => 'ppa', 'Pp3c9_8990' => 'ppa', 'PRCOL_00002854' => 'pco', 'Prupe.1G221200' => 'ppe', 'Prupe.3G289000' => 'ppe', 'Prupe.5G147000' => 'ppe', 'Prupe.6G157300' => 'ppe', 'Prupe.7G163400' => 'ppe', 'Psat0s2177g0040' => 'psa', 'Psat3g174760' => 'psa', 'Psat3g192160' => 'psa', 'Psat4g058520' => 'psa', 'Psat4g096840' => 'psa', 'Psat7g037320' => 'psa', 'PSO017G1274' => 'pso', 'PSO017G5166' => 'pso', 'PSO063G4558' => 'pso', 'PSO170G4458' => 'pso', 'PSO170G5005' => 'pso', 'PSO210G6156' => 'pso', 'PSO210G6635' => 'pso', 'PSO210G7397' => 'pso', 'PSO210G7700' => 'pso', 'PSO455G0035' => 'pso', 'PSO455G0180' => 'pso', 'PSO478G4515' => 'pso', 'PSO832G1305' => 'pso', 'PSO832G3489' => 'pso', 'QL02p075247' => 'qlo', 'QL03p051148' => 'qlo', 'QL05p010313' => 'qlo', 'QL06p034627' => 'qlo', 'QL10p001889' => 'qlo', 'QL10p010846' => 'qlo', 'RcHm_v2.0_Chr1g0350621' => 'rch', 'RcHm_v2.0_Chr1g0350641' => 'rch', 'RcHm_v2.0_Chr2g0092891' => 'rch', 'RcHm_v2.0_Chr2g0100251' => 'rch', 'RcHm_v2.0_Chr2g0158661' => 'rch', 'RcHm_v2.0_Chr2g0172741' => 'rch', 'RcHm_v2.0_Chr4g0429571' => 'rch', 'RcHm_v2.0_Chr5g0042471' => 'rch', 'RcHm_v2.0_Chr7g0189451' => 'rch', 'Rhsim08G0052000' => 'rsi', 'Rhsim08G0174400' => 'rsi', 'Rhsim08G0193200' => 'rsi', 'Rhsim10G0214800' => 'rsi', 'Rhsim10G0214900' => 'rsi', 'Rhsim10G0215000' => 'rsi', 'Rhsim12G0022900' => 'rsi', 'Rhsim12G0177500' => 'rsi', 'Rhsim12G0177700' => 'rsi', 'Sabra03G0122600' => 'sbr', 'Sabra05G0097400' => 'sbr', 'Sabra12G0064100' => 'sbr', 'Sabra15G0121300' => 'sbr', 'SalBow2G0642' => 'sbo', 'SalBow5G2667' => 'sbo', 'SalBow5G4873' => 'sbo', 'SalBow8G2395' => 'sbo', 'Sc03g0003290' => 'sci', 'Sc10g0010130' => 'sci', 'Sc22g0003650' => 'sci', 'Sed0001603' => 'sed', 'Sed0004259' => 'sed', 'Sed0006789' => 'sed', 'Sed0011838' => 'sed', 'Sed0012964' => 'sed', 'Sed0016383' => 'sed', 'Sed0019010' => 'sed', 'Sed0020188' => 'sed', 'SEGI_04702' => 'sgi', 'SEGI_17231' => 'sgi', 'SEGI_18877' => 'sgi', 'SEGI_25196' => 'sgi', 'SEGI_25515' => 'sgi', 'SEGI_28445' => 'sgi', 'SEGI_37452' => 'sgi', 'SGA_v2.0_scaffold188G40336' => 'sas', 'SGA_v2.0_scaffold228G43247' => 'sas', 'SGA_v2.0_scaffold280G46853' => 'sas', 'SGA_v2.0_scaffold34G13808' => 'sas', 'SGA_v2.0_scaffold40G15576' => 'sas', 'SGA_v2.0_scaffold611G53188' => 'sas', 'SGA_v2.0_scaffold78G25461' => 'sas', 'SGA_v2.0_scaffold90G27888' => 'sas', 'SHI08601' => 'shi', 'SHI08606' => 'shi', 'SHI17117' => 'shi', 'SHI17119' => 'shi', 'SMO118G0201' => 'smo', 'SMO169G0247' => 'smo', 'SMO176G0006' => 'smo', 'SMO176G0015' => 'smo', 'SMO202G0006' => 'smo', 'SMO240G0050' => 'smo', 'SMO286G0009' => 'smo', 'SMO338G0033' => 'smo', 'SMO356G0533' => 'smo', 'SMO364G0382' => 'smo', 'SMO367G0166' => 'smo', 'SMO367G1098' => 'smo', 'Solyc01g009920.3' => 'sly', 'Solyc01g099300.3' => 'sly', 'Solyc02g084700.3' => 'sly', 'Solyc03g097520.3' => 'sly', 'Solyc06g071580.3' => 'sly', 'Solyc10g081760.3' => 'sly', 'Sopen01g005480' => 'spe', 'Sopen01g042850' => 'spe', 'Sopen02g029370' => 'spe', 'Sopen03g028280' => 'spe', 'Sopen06g027870' => 'spe', 'Sopen10g032270' => 'spe', 'Sp5g18180' => 'spa', 'Sp6g12880' => 'spa', 'Sp6g30850' => 'spa', 'Sp7g22960' => 'spa', 'Sp7g34010' => 'spa', 'SpUn1326_0010' => 'spa', 'TAR371G0242' => 'tar', 'TAR622G0638' => 'tar', 'TAR628G1548' => 'tar', 'TAR629G1079' => 'tar', 'TAR629G3413' => 'tar', 'THA.LOC104804249' => 'tha', 'THA.LOC104808315' => 'tha', 'THA.LOC104809238' => 'tha', 'THA.LOC104825484' => 'tha', 'Thecc.01G025500' => 'tca', 'Thecc.03G015800' => 'tca', 'Thecc.03G018000' => 'tca', 'Thecc.03G134800' => 'tca', 'Thecc.04G014700' => 'tca', 'Thhalv10006991m.g' => 'esa', 'Thhalv10012707m.g' => 'esa', 'Thhalv10015739m.g' => 'esa', 'Thhalv10024553m.g' => 'esa', 'Thhalv10024673m.g' => 'esa', 'Thhalv10029187m.g' => 'esa', 'TPR.G12971' => 'tpr', 'TPR.G29396' => 'tpr', 'TPR.G33376' => 'tpr', 'TPR.G35508' => 'tpr', 'TPR.G35516' => 'tpr', 'TPR.G37317' => 'tpr', 'TPR.G37389' => 'tpr', 'TPR.G37523' => 'tpr', 'TPR.G559' => 'tpr', 'TWI14G0070' => 'twi', 'TWI14G0729' => 'twi', 'TWI18G0596' => 'twi', 'TWI39G0780' => 'twi', 'TWI39G0850' => 'twi', 'TWI73G1052' => 'twi', 'unitig_52.g17485' => 'ugi', 'unitig_61.g26355' => 'ugi', 'vmacro01040' => 'vma', 'vmacro16731' => 'vma', 'vmacro18270' => 'vma', 'vmacro19142' => 'vma', 'vmacro19407' => 'vma', 'vmacro19408' => 'vma', 'vmacro21899' => 'vma', 'vmacro21900' => 'vma', 'vmacro21901' => 'vma', 'VMungo0251G0490' => 'vmu', 'VMungo0251G1748' => 'vmu', 'VMungo1309G0421' => 'vmu', 'Zm00001eb086500' => 'zma', 'Zm00001eb150680' => 'zma', 'Zm00001eb162330' => 'zma', 'Zm00001eb203130' => 'zma', 'Zm00001eb369480' => 'zma', 'Zm00001eb382340' => 'zma', 'Zm00001eb416360' => 'zma' ) $gf_id = 'HOM05D000902' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000902' ) $data_identifier = 'HOM05D000902' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 13, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 10, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 6, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 9, 'hma' => (int) 12, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 4, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 6, 'ppa' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 6, 'rch' => (int) 9, 'rsi' => (int) 9, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 12, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 3, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416360' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000902', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '663', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02470' => 'bna', 'A01p16260' => 'bna', 'A02p01680' => 'bna', 'A03p16600' => 'bna', 'A03p55660' => 'bna', 'A03p64160' => 'bna', 'A03p64170' => 'bna', 'A08p31900' => 'bna', 'A09p59530' => 'bna', 'A10p08230' => 'bna', 'A10p25090' => 'bna', 'Aa31LG3G7100' => 'aar', 'Aa31LG3G7110' => 'aar', 'Aa31LG6G13160' => 'aar', 'Aa31LG7G10770' => 'aar', 'Aa31LG7G3830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2723' => 'aag', 'Actinidia08045' => 'ach', 'Actinidia08888' => 'ach', 'Actinidia18333' => 'ach', 'Actinidia19334' => 'ach', 'Actinidia25552' => 'ach', 'Actinidia26089' => 'ach', 'Actinidia30615' => 'ach', 'Actinidia30616' => 'ach', 'Actinidia33083' => 'ach', 'Actinidia35762' => 'ach', 'Ah.02g110620' => 'amhyb', 'Ah.11g046390' => 'amhyb', 'AL1G31670' => 'aly', 'AL6G23730' => 'aly', 'AL7G14740' => 'aly', 'AL7G14750' => 'aly', 'AL7G14760' => 'aly', 'AL7G28220' => 'aly', 'AL8G24940' => 'aly', 'Aqoxy3G01665' => 'aox', 'Aqoxy3G02853' => 'aox', 'Aqoxy5G01513' => 'aox', 'Aqoxy5G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8SKA4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ75LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKDA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0LJZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7REX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZP4YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWX7I5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2QKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS0L9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPCD8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q161UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC7XCF' => 'arhy', 'AT1G19100' => 'ath', 'AT4G24970' => 'ath', 'AT4G36270' => 'ath', 'AT4G36280' => 'ath', 'AT4G36290' => 'ath', 'AT5G13130' => 'ath', 'AT5G50780' => 'ath', 'ATR0582G266' => 'atr', 'ATR0661G195' => 'atr', 'ATR1152G031' => 'atr', 'Atru.chr11.2382' => 'acertr', 'Atru.chr12.2337' => 'acertr', 'Atru.chr3.744' => 'acertr', 'Atru.chr6.1870' => 'acertr', 'Atru.chr9.2515' => 'acertr', 'AUR62004120' => 'cqu', 'AUR62005667' => 'cqu', 'AUR62007634' => 'cqu', 'AUR62008186' => 'cqu', 'AUR62008187' => 'cqu', 'AUR62008188' => 'cqu', 'AUR62027954' => 'cqu', 'AUR62028766' => 'cqu', 'AUR62028767' => 'cqu', 'AUR62028768' => 'cqu', 'AUR62028886' => 'cqu', 'AUR62029563' => 'cqu', 'AUR62038832' => 'cqu', 'BcaB01g04149' => 'bca', 'BcaB03g12940' => 'bca', 'BcaB03g13090' => 'bca', 'BcaB03g14466' => 'bca', 'BcaB05g24035' => 'bca', 'BcaC01g06050' => 'bca', 'BcaC04g19148' => 'bca', 'BcaC04g20761' => 'bca', 'BcaC06g32845' => 'bca', 'BcaC07g41274' => 'bca', 'BcaC09g50827' => 'bca', 'BcaNung00741' => 'bca', 'BcaNung00742' => 'bca', 'BcaNung01859' => 'bca', 'BcaNung03985' => 'bca', 'BcaNung03989' => 'bca', 'BcaNung05661' => 'bca', 'BolC1t00257H' => 'bol', 'BolC1t01956H' => 'bol', 'BolC2t06534H' => 'bol', 'BolC3t14334H' => 'bol', 'BolC5t30451H' => 'bol', 'BolC7t45880H' => 'bol', 'BolC7t46586H' => 'bol', 'BolC8t49301H' => 'bol', 'BolC8t51837H' => 'bol', 'BolC9t56822H' => 'bol', 'BolC9t59235H' => 'bol', 'BraA01t00234Z' => 'bra', 'BraA01t01563Z' => 'bra', 'BraA02t05147Z' => 'bra', 'BraA03t10947Z' => 'bra', 'BraA03t14633Z' => 'bra', 'BraA08t35112Z' => 'bra', 'BraA09t41330Z' => 'bra', 'BraA10t44570Z' => 'bra', 'C01p02670' => 'bna', 'C01p20260' => 'bna', 'C02p05890' => 'bna', 'C03p19530' => 'bna', 'C05p17470' => 'bna', 'C07p53900' => 'bna', 'C07p61630' => 'bna', 'C08p16800' => 'bna', 'C08p42810' => 'bna', 'C09p39480' => 'bna', 'C09p63980' => 'bna', 'CAN.G1001.7' => 'can', 'CAN.G1034.55' => 'can', 'CAN.G143.7' => 'can', 'CAN.G3340.1' => 'can', 'CAN.G358.19' => 'can', 'CAN.G373.2' => 'can', 'CAN.G674.16' => 'can', 'CAN.G674.17' => 'can', 'CAN.G674.18' => 'can', 'CAN.G732.2' => 'can', 'CAN.G732.3' => 'can', 'CAN.G993.39' => 'can', 'CANSAT01G2052' => 'cansat', 'CANSAT80G0070' => 'cansat', 'CANSAT80G0483' => 'cansat', 'CANSAT80G0625' => 'cansat', 'CARHR019690' => 'chi', 'CARHR080280' => 'chi', 'CARHR152750' => 'chi', 'CARHR152760' => 'chi', 'CARHR152770' => 'chi', 'CARHR200340' => 'chi', 'CARHR232370' => 'chi', 'CARHR244670' => 'chi', 'CARHR244680' => 'chi', 'CARHR257520' => 'chi', 'Carub.0001s1872' => 'cru', 'Carub.0006s1130' => 'cru', 'Carub.0007s0396' => 'cru', 'Carub.0007s0397' => 'cru', 'Carub.0007s1608' => 'cru', 'Carub.0008s1068' => 'cru', 'Carub.0008s1077' => 'cru', 'Ca_16158_v3' => 'car', 'Ca_17571_v3' => 'car', 'Ca_21936_v3' => 'car', 'Ca_22350_v3' => 'car', 'CBR_g22445' => 'cbr', 'CBR_g26290' => 'cbr', 'Cc04_g09610' => 'ccan', 'Cc04_g12280' => 'ccan', 'Cc07_g10230' => 'ccan', 'CDE02G0093' => 'cde', 'CDE02G0701' => 'cde', 'CDE04G1050' => 'cde', 'CDE05G1833' => 'cde', 'CDE05G3058' => 'cde', 'CDE05G3380' => 'cde', 'CDE06G0536' => 'cde', 'Cfa006923' => 'cfa', 'Cfa009402' => 'cfa', 'Cfa018751' => 'cfa', 'Cfa019164' => 'cfa', 'Cfa022935' => 'cfa', 'Ciclev10019081m.g' => 'ccl', 'Ciclev10025076m.g' => 'ccl', 'Ciclev10030712m.g' => 'ccl', 'Ciclev10033760m.g' => 'ccl', 'CiPaw.05G105600' => 'cil', 'CiPaw.08G136700' => 'cil', 'CiPaw.11G003900' => 'cil', 'CiPaw.11G023700' => 'cil', 'CiPaw.12G003700' => 'cil', 'ClCG06G017100' => 'cla', 'ClCG06G018110' => 'cla', 'ClCG07G008800' => 'cla', 'ClCG07G015330' => 'cla', 'COL.COLO4_13698' => 'col', 'COL.COLO4_16659' => 'col', 'COL.COLO4_21986' => 'col', 'COL.COLO4_24049' => 'col', 'COL.COLO4_29061' => 'col', 'COL.COLO4_29075' => 'col', 'COL.COLO4_30094' => 'col', 'Cpa.g.c33689' => 'cpa', 'Cpa.g.sc108.39' => 'cpa', 'Cpa.g.sc108.41' => 'cpa', 'Cpa.g.sc1163.1' => 'cpa', 'Cpa.g.sc4.155' => 'cpa', 'Cpa.g.sc6.194' => 'cpa', 'CsaV3_1G000340' => 'csa', 'CsaV3_1G001400' => 'csa', 'CsaV3_4G002220' => 'csa', 'CsaV3_4G005370' => 'csa', 'CSS0007487' => 'camsi', 'CSS0008066' => 'camsi', 'CSS0009120' => 'camsi', 'CSS0015512' => 'camsi', 'CSS0022409' => 'camsi', 'CSS0025358' => 'camsi', 'CSS0044547' => 'camsi', 'DCAR_013057' => 'dca', 'DCAR_015058' => 'dca', 'DCAR_016027' => 'dca', 'DCAR_017327' => 'dca', 'DCAR_020743' => 'dca', 'DCAR_026157' => 'dca', 'DCAR_032339' => 'dca', 'DCAR_032340' => 'dca', 'Dinv11200' => 'din', 'Dinv11201' => 'din', 'Dinv20631' => 'din', 'Dinv23182' => 'din', 'Dinv33466' => 'din', 'Dinv33583' => 'din', 'Dinv38565' => 'din', 'Duzib068G0200' => 'dzi', 'Duzib147G0132' => 'dzi', 'Duzib147G0635' => 'dzi', 'Duzib205G1670' => 'dzi', 'Duzib251G0606' => 'dzi', 'ECA232G3336' => 'eca', 'ECA232G3763' => 'eca', 'ECA232G4845' => 'eca', 'ECA234G1607' => 'eca', 'ECA246G0932' => 'eca', 'ECA247G0781' => 'eca', 'ECA247G1932' => 'eca', 'ECA247G2079' => 'eca', 'ECA247G3338' => 'eca', 'ECA247G4115' => 'eca', 'EL10Ac3g06552' => 'bvu', 'EL10Ac5g10721' => 'bvu', 'EL10Ac5g10722' => 'bvu', 'EL10Ac5g10723' => 'bvu', 'EL10Ac5g11361' => 'bvu', 'EL10Ac6g13553' => 'bvu', 'EL10As8g23872' => 'bvu', 'Eucgr.B00250' => 'egr', 'Eucgr.B00251' => 'egr', 'Eucgr.B03533' => 'egr', 'Eucgr.I02381' => 'egr', 'Eucgr.K02700' => 'egr', 'FAN02G0174' => 'fan', 'FAN02G3146' => 'fan', 'FAN04G1672' => 'fan', 'FAN04G2273' => 'fan', 'FAN05G2791' => 'fan', 'FAN05G4035' => 'fan', 'FAN07G0834' => 'fan', 'FAN08G1198' => 'fan', 'FAN09G4182' => 'fan', 'FAN12G0496' => 'fan', 'FAN13G1027' => 'fan', 'FAN13G2951' => 'fan', 'FAN14G0705' => 'fan', 'FAN14G0720' => 'fan', 'FAN17G0201' => 'fan', 'FAN17G2665' => 'fan', 'FAN18G1456' => 'fan', 'FAN18G1525' => 'fan', 'FAN18G3500' => 'fan', 'FAN28G2670' => 'fan', 'FvH4_1g12391' => 'fve', 'FvH4_4g23220' => 'fve', 'FvH4_5g08810' => 'fve', 'FvH4_5g28960' => 'fve', 'FvH4_6g42820' => 'fve', 'FvH4_6g51110' => 'fve', 'Glyma.02G051802' => 'gma', 'Glyma.04G185300' => 'gma', 'Glyma.05G202900' => 'gma', 'Glyma.08G010300' => 'gma', 'Glyma.16G131900' => 'gma', 'Glyma.17G087900' => 'gma', 'Gohir.A07G048600' => 'ghi', 'Gohir.A11G179000' => 'ghi', 'Gohir.A12G140900' => 'ghi', 'Gohir.A12G140950' => 'ghi', 'Gohir.A12G191700' => 'ghi', 'Gohir.A13G086300' => 'ghi', 'Gohir.D07G052900' => 'ghi', 'Gohir.D11G186600' => 'ghi', 'Gohir.D12G145575' => 'ghi', 'Gohir.D12G145650' => 'ghi', 'Gohir.D12G145725' => 'ghi', 'Gohir.D12G194050' => 'ghi', 'Gohir.D13G091800' => 'ghi', 'Gorai.001G055900' => 'gra', 'Gorai.007G198400' => 'gra', 'Gorai.008G157000' => 'gra', 'Gorai.008G157100' => 'gra', 'Gorai.008G208700' => 'gra', 'Gorai.010G138700' => 'gra', 'GSVIVG01000977001' => 'vvi', 'GSVIVG01007708001' => 'vvi', 'GSVIVG01008587001' => 'vvi', 'GSVIVG01018849001' => 'vvi', 'GSVIVG01032432001' => 'vvi', 'HanXRQChr02g0034131' => 'han', 'HanXRQChr02g0035981' => 'han', 'HanXRQChr02g0035991' => 'han', 'HanXRQChr05g0155611' => 'han', 'HanXRQChr05g0155621' => 'han', 'HanXRQChr08g0236501' => 'han', 'HanXRQChr09g0261321' => 'han', 'HanXRQChr09g0272081' => 'han', 'HanXRQChr10g0310741' => 'han', 'HanXRQChr11g0325591' => 'han', 'HanXRQChr12g0385691' => 'han', 'HanXRQChr13g0387801' => 'han', 'HanXRQChr15g0463011' => 'han', 'Haze_03826' => 'cav', 'Haze_03827' => 'cav', 'Haze_07183' => 'cav', 'Haze_07537' => 'cav', 'Haze_07539' => 'cav', 'Haze_12461' => 'cav', 'Haze_16115' => 'cav', 'Haze_16808' => 'cav', 'Haze_18531' => 'cav', 'Hma1.2p1_0046F.1_g026700' => 'hma', 'Hma1.2p1_0046F.1_g026710' => 'hma', 'Hma1.2p1_0168F.1_g074340' => 'hma', 'Hma1.2p1_0266F.1_g107030' => 'hma', 'Hma1.2p1_0266F.1_g107060' => 'hma', 'Hma1.2p1_0275F.1_g110510' => 'hma', 'Hma1.2p1_0592F.1_g185490' => 'hma', 'Hma1.2p1_0592F.1_g185500' => 'hma', 'Hma1.2p1_0592F.1_g185510' => 'hma', 'Hma1.2p1_0592F.1_g185520' => 'hma', 'Hma1.2p1_0592F.1_g185530' => 'hma', 'Hma1.2p1_0818F.1_g223450' => 'hma', 'HPP92_009708' => 'vpl', 'HPP92_009793' => 'vpl', 'HPP92_009796' => 'vpl', 'HPP92_009797' => 'vpl', 'HPP92_014940' => 'vpl', 'HPP92_014988' => 'vpl', 'Hund02463' => 'sun', 'Hund02760' => 'sun', 'Hund05071' => 'sun', 'Hund10108' => 'sun', 'Hund11204' => 'sun', 'Hund14016' => 'sun', 'Hund16464' => 'sun', 'Lalb_Chr09g0333391' => 'lal', 'Lalb_Chr11g0070461' => 'lal', 'Lalb_Chr12g0201671' => 'lal', 'Lalb_Chr13g0297161' => 'lal', 'Lj1g0002823' => 'lja', 'Lj3C1074T6' => 'lonja', 'Lj4A212T28' => 'lonja', 'Lj4g0005516' => 'lja', 'Lj4g0013705' => 'lja', 'Lj4g0027865' => 'lja', 'Lj5C92G16' => 'lonja', 'Lj5C92T12' => 'lonja', 'Lj7C596T3' => 'lonja', 'Lj9A446G59' => 'lonja', 'Lj9A482G21' => 'lonja', 'Lsat_1_v5_gn_1_28261' => 'lsa', 'Lsat_1_v5_gn_1_28281' => 'lsa', 'Lsat_1_v5_gn_1_32721' => 'lsa', 'Lsat_1_v5_gn_4_151760' => 'lsa', 'Lsat_1_v5_gn_4_2120' => 'lsa', 'Lsat_1_v5_gn_4_75761' => 'lsa', 'Lsat_1_v5_gn_5_10920' => 'lsa', 'Manes.02G099900' => 'mes', 'Manes.11G096200' => 'mes', 'Manes.12G007200' => 'mes', 'Manes.14G048300' => 'mes', 'Manes.17G114700' => 'mes', 'Mapoly0002s0070' => 'mpo', 'Mapoly0029s0099' => 'mpo', 'MBI07_g24742_MAGBIO' => 'mbi', 'MBI10_g27988_MAGBIO' => 'mbi', 'MBI11_g13057_MAGBIO' => 'mbi', 'MD02G1137200' => 'mdo', 'MD06G1137200' => 'mdo', 'MD07G1122300' => 'mdo', 'MD09G1078200' => 'mdo', 'MD13G1123700' => 'mdo', 'MD14G1151900' => 'mdo', 'MD17G1030900' => 'mdo', 'MD17G1068200' => 'mdo', 'MD17G1068600' => 'mdo', 'Medtr3g077540' => 'mtr', 'Medtr4g105530' => 'mtr', 'Medtr8g076580' => 'mtr', 'Medtr8g076590' => 'mtr', 'Medtr8g096410' => 'mtr', 'MELO3C016411.2' => 'cme', 'MELO3C017780.2' => 'cme', 'MELO3C022560.2' => 'cme', 'MELO3C026187.2' => 'cme', 'MELO3C026286.2' => 'cme', 'MELO3C032854.2' => 'cme', 'Migut.H02495' => 'egut', 'Migut.I00561' => 'egut', 'Migut.K01015' => 'egut', 'Migut.K01016' => 'egut', 'Migut.L00743' => 'egut', 'Migut.L00744' => 'egut', 'Migut.L00746' => 'egut', 'Migut.L00798' => 'egut', 'Migut.L00799' => 'egut', 'Migut.N02096' => 'egut', 'MSTRG.11259' => 'ama', 'MSTRG.23142' => 'ama', 'MSTRG.2499' => 'ama', 'Nitab4.5_0000003g0730' => 'nta', 'Nitab4.5_0000137g0020' => 'nta', 'Nitab4.5_0000721g0210' => 'nta', 'Nitab4.5_0000723g0050' => 'nta', 'Nitab4.5_0000913g0070' => 'nta', 'Nitab4.5_0001332g0040' => 'nta', 'Nitab4.5_0001771g0050' => 'nta', 'Nitab4.5_0001918g0050' => 'nta', 'Nitab4.5_0002686g0030' => 'nta', 'Nitab4.5_0003156g0020' => 'nta', 'Nitab4.5_0003383g0040' => 'nta', 'Nitab4.5_0003918g0010' => 'nta', 'Nitab4.5_0006760g0010' => 'nta', 'Nn1g05981' => 'nnu', 'Nn1g06288' => 'nnu', 'Nn3g16371' => 'nnu', 'Nn3g16786' => 'nnu', 'Nn4g22232' => 'nnu', 'Oeu005144.1' => 'oeu', 'Oeu005145.1' => 'oeu', 'Oeu011348.1' => 'oeu', 'Oeu016415.1' => 'oeu', 'Oeu023501.1' => 'oeu', 'Oeu044473.1' => 'oeu', 'Oeu048892.2' => 'oeu', 'Os01g0549200' => 'osa', 'Os02g0469300' => 'osa', 'Os04g0311100' => 'osa', 'Os06g0474900' => 'osa', 'Os10g0181700' => 'osa', 'Os11g0454800' => 'osa', 'Peaxi162Scf00037g00714' => 'pax', 'Peaxi162Scf00084g01217' => 'pax', 'Peaxi162Scf00257g00217' => 'pax', 'Peaxi162Scf00516g00215' => 'pax', 'Peaxi162Scf00689g00123' => 'pax', 'PGR044G2719' => 'pgr', 'PGR083G1360' => 'pgr', 'PGR102G2849' => 'pgr', 'PGR119G2534' => 'pgr', 'PGSC0003DMG400003538' => 'stu', 'PGSC0003DMG400028138' => 'stu', 'PGSC0003DMG400031732' => 'stu', 'PGSC0003DMG400038165' => 'stu', 'Phvul.002G284600' => 'pvu', 'Phvul.003G258200' => 'pvu', 'Phvul.009G176500' => 'pvu', 'Potri.003G167201' => 'ptr', 'Potri.005G118400' => 'ptr', 'Potri.012G089000' => 'ptr', 'Potri.012G102800' => 'ptr', 'Potri.015G079400' => 'ptr', 'Potri.015G100900' => 'ptr', 'Pp3c14_9810' => 'ppa', 'Pp3c15_10450' => 'ppa', 'Pp3c20_19150' => 'ppa', 'Pp3c23_12740' => 'ppa', 'Pp3c23_6310' => 'ppa', 'Pp3c24_3720' => 'ppa', 'Pp3c27_2580' => 'ppa', 'Pp3c9_8990' => 'ppa', 'PRCOL_00002854' => 'pco', 'Prupe.1G221200' => 'ppe', 'Prupe.3G289000' => 'ppe', 'Prupe.5G147000' => 'ppe', 'Prupe.6G157300' => 'ppe', 'Prupe.7G163400' => 'ppe', 'Psat0s2177g0040' => 'psa', 'Psat3g174760' => 'psa', 'Psat3g192160' => 'psa', 'Psat4g058520' => 'psa', 'Psat4g096840' => 'psa', 'Psat7g037320' => 'psa', 'PSO017G1274' => 'pso', 'PSO017G5166' => 'pso', 'PSO063G4558' => 'pso', 'PSO170G4458' => 'pso', 'PSO170G5005' => 'pso', 'PSO210G6156' => 'pso', 'PSO210G6635' => 'pso', 'PSO210G7397' => 'pso', 'PSO210G7700' => 'pso', 'PSO455G0035' => 'pso', 'PSO455G0180' => 'pso', 'PSO478G4515' => 'pso', 'PSO832G1305' => 'pso', 'PSO832G3489' => 'pso', 'QL02p075247' => 'qlo', 'QL03p051148' => 'qlo', 'QL05p010313' => 'qlo', 'QL06p034627' => 'qlo', 'QL10p001889' => 'qlo', 'QL10p010846' => 'qlo', 'RcHm_v2.0_Chr1g0350621' => 'rch', 'RcHm_v2.0_Chr1g0350641' => 'rch', 'RcHm_v2.0_Chr2g0092891' => 'rch', 'RcHm_v2.0_Chr2g0100251' => 'rch', 'RcHm_v2.0_Chr2g0158661' => 'rch', 'RcHm_v2.0_Chr2g0172741' => 'rch', 'RcHm_v2.0_Chr4g0429571' => 'rch', 'RcHm_v2.0_Chr5g0042471' => 'rch', 'RcHm_v2.0_Chr7g0189451' => 'rch', 'Rhsim08G0052000' => 'rsi', 'Rhsim08G0174400' => 'rsi', 'Rhsim08G0193200' => 'rsi', 'Rhsim10G0214800' => 'rsi', 'Rhsim10G0214900' => 'rsi', 'Rhsim10G0215000' => 'rsi', 'Rhsim12G0022900' => 'rsi', 'Rhsim12G0177500' => 'rsi', 'Rhsim12G0177700' => 'rsi', 'Sabra03G0122600' => 'sbr', 'Sabra05G0097400' => 'sbr', 'Sabra12G0064100' => 'sbr', 'Sabra15G0121300' => 'sbr', 'SalBow2G0642' => 'sbo', 'SalBow5G2667' => 'sbo', 'SalBow5G4873' => 'sbo', 'SalBow8G2395' => 'sbo', 'Sc03g0003290' => 'sci', 'Sc10g0010130' => 'sci', 'Sc22g0003650' => 'sci', 'Sed0001603' => 'sed', 'Sed0004259' => 'sed', 'Sed0006789' => 'sed', 'Sed0011838' => 'sed', 'Sed0012964' => 'sed', 'Sed0016383' => 'sed', 'Sed0019010' => 'sed', 'Sed0020188' => 'sed', 'SEGI_04702' => 'sgi', 'SEGI_17231' => 'sgi', 'SEGI_18877' => 'sgi', 'SEGI_25196' => 'sgi', 'SEGI_25515' => 'sgi', 'SEGI_28445' => 'sgi', 'SEGI_37452' => 'sgi', 'SGA_v2.0_scaffold188G40336' => 'sas', 'SGA_v2.0_scaffold228G43247' => 'sas', 'SGA_v2.0_scaffold280G46853' => 'sas', 'SGA_v2.0_scaffold34G13808' => 'sas', 'SGA_v2.0_scaffold40G15576' => 'sas', 'SGA_v2.0_scaffold611G53188' => 'sas', 'SGA_v2.0_scaffold78G25461' => 'sas', 'SGA_v2.0_scaffold90G27888' => 'sas', 'SHI08601' => 'shi', 'SHI08606' => 'shi', 'SHI17117' => 'shi', 'SHI17119' => 'shi', 'SMO118G0201' => 'smo', 'SMO169G0247' => 'smo', 'SMO176G0006' => 'smo', 'SMO176G0015' => 'smo', 'SMO202G0006' => 'smo', 'SMO240G0050' => 'smo', 'SMO286G0009' => 'smo', 'SMO338G0033' => 'smo', 'SMO356G0533' => 'smo', 'SMO364G0382' => 'smo', 'SMO367G0166' => 'smo', 'SMO367G1098' => 'smo', 'Solyc01g009920.3' => 'sly', 'Solyc01g099300.3' => 'sly', 'Solyc02g084700.3' => 'sly', 'Solyc03g097520.3' => 'sly', 'Solyc06g071580.3' => 'sly', 'Solyc10g081760.3' => 'sly', 'Sopen01g005480' => 'spe', 'Sopen01g042850' => 'spe', 'Sopen02g029370' => 'spe', 'Sopen03g028280' => 'spe', 'Sopen06g027870' => 'spe', 'Sopen10g032270' => 'spe', 'Sp5g18180' => 'spa', 'Sp6g12880' => 'spa', 'Sp6g30850' => 'spa', 'Sp7g22960' => 'spa', 'Sp7g34010' => 'spa', 'SpUn1326_0010' => 'spa', 'TAR371G0242' => 'tar', 'TAR622G0638' => 'tar', 'TAR628G1548' => 'tar', 'TAR629G1079' => 'tar', 'TAR629G3413' => 'tar', 'THA.LOC104804249' => 'tha', 'THA.LOC104808315' => 'tha', 'THA.LOC104809238' => 'tha', 'THA.LOC104825484' => 'tha', 'Thecc.01G025500' => 'tca', 'Thecc.03G015800' => 'tca', 'Thecc.03G018000' => 'tca', 'Thecc.03G134800' => 'tca', 'Thecc.04G014700' => 'tca', 'Thhalv10006991m.g' => 'esa', 'Thhalv10012707m.g' => 'esa', 'Thhalv10015739m.g' => 'esa', 'Thhalv10024553m.g' => 'esa', 'Thhalv10024673m.g' => 'esa', 'Thhalv10029187m.g' => 'esa', 'TPR.G12971' => 'tpr', 'TPR.G29396' => 'tpr', 'TPR.G33376' => 'tpr', 'TPR.G35508' => 'tpr', 'TPR.G35516' => 'tpr', 'TPR.G37317' => 'tpr', 'TPR.G37389' => 'tpr', 'TPR.G37523' => 'tpr', 'TPR.G559' => 'tpr', 'TWI14G0070' => 'twi', 'TWI14G0729' => 'twi', 'TWI18G0596' => 'twi', 'TWI39G0780' => 'twi', 'TWI39G0850' => 'twi', 'TWI73G1052' => 'twi', 'unitig_52.g17485' => 'ugi', 'unitig_61.g26355' => 'ugi', 'vmacro01040' => 'vma', 'vmacro16731' => 'vma', 'vmacro18270' => 'vma', 'vmacro19142' => 'vma', 'vmacro19407' => 'vma', 'vmacro19408' => 'vma', 'vmacro21899' => 'vma', 'vmacro21900' => 'vma', 'vmacro21901' => 'vma', 'VMungo0251G0490' => 'vmu', 'VMungo0251G1748' => 'vmu', 'VMungo1309G0421' => 'vmu', 'Zm00001eb086500' => 'zma', 'Zm00001eb150680' => 'zma', 'Zm00001eb162330' => 'zma', 'Zm00001eb203130' => 'zma', 'Zm00001eb369480' => 'zma', 'Zm00001eb382340' => 'zma', 'Zm00001eb416360' => 'zma' ), 'gf_id' => 'HOM05D000902', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000902' ), 'data_identifier' => 'HOM05D000902', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000902', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '663', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02470' => 'bna', 'A01p16260' => 'bna', 'A02p01680' => 'bna', 'A03p16600' => 'bna', 'A03p55660' => 'bna', 'A03p64160' => 'bna', 'A03p64170' => 'bna', 'A08p31900' => 'bna', 'A09p59530' => 'bna', 'A10p08230' => 'bna', 'A10p25090' => 'bna', 'Aa31LG3G7100' => 'aar', 'Aa31LG3G7110' => 'aar', 'Aa31LG6G13160' => 'aar', 'Aa31LG7G10770' => 'aar', 'Aa31LG7G3830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2723' => 'aag', 'Actinidia08045' => 'ach', 'Actinidia08888' => 'ach', 'Actinidia18333' => 'ach', 'Actinidia19334' => 'ach', 'Actinidia25552' => 'ach', 'Actinidia26089' => 'ach', 'Actinidia30615' => 'ach', 'Actinidia30616' => 'ach', 'Actinidia33083' => 'ach', 'Actinidia35762' => 'ach', 'Ah.02g110620' => 'amhyb', 'Ah.11g046390' => 'amhyb', 'AL1G31670' => 'aly', 'AL6G23730' => 'aly', 'AL7G14740' => 'aly', 'AL7G14750' => 'aly', 'AL7G14760' => 'aly', 'AL7G28220' => 'aly', 'AL8G24940' => 'aly', 'Aqoxy3G01665' => 'aox', 'Aqoxy3G02853' => 'aox', 'Aqoxy5G01513' => 'aox', 'Aqoxy5G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8SKA4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ75LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKDA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0LJZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7REX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZP4YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWX7I5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2QKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS0L9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPCD8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q161UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC7XCF' => 'arhy', 'AT1G19100' => 'ath', 'AT4G24970' => 'ath', 'AT4G36270' => 'ath', 'AT4G36280' => 'ath', 'AT4G36290' => 'ath', 'AT5G13130' => 'ath', 'AT5G50780' => 'ath', 'ATR0582G266' => 'atr', 'ATR0661G195' => 'atr', 'ATR1152G031' => 'atr', 'Atru.chr11.2382' => 'acertr', 'Atru.chr12.2337' => 'acertr', 'Atru.chr3.744' => 'acertr', 'Atru.chr6.1870' => 'acertr', 'Atru.chr9.2515' => 'acertr', 'AUR62004120' => 'cqu', 'AUR62005667' => 'cqu', 'AUR62007634' => 'cqu', 'AUR62008186' => 'cqu', 'AUR62008187' => 'cqu', 'AUR62008188' => 'cqu', 'AUR62027954' => 'cqu', 'AUR62028766' => 'cqu', 'AUR62028767' => 'cqu', 'AUR62028768' => 'cqu', 'AUR62028886' => 'cqu', 'AUR62029563' => 'cqu', 'AUR62038832' => 'cqu', 'BcaB01g04149' => 'bca', 'BcaB03g12940' => 'bca', 'BcaB03g13090' => 'bca', 'BcaB03g14466' => 'bca', 'BcaB05g24035' => 'bca', 'BcaC01g06050' => 'bca', 'BcaC04g19148' => 'bca', 'BcaC04g20761' => 'bca', 'BcaC06g32845' => 'bca', 'BcaC07g41274' => 'bca', 'BcaC09g50827' => 'bca', 'BcaNung00741' => 'bca', 'BcaNung00742' => 'bca', 'BcaNung01859' => 'bca', 'BcaNung03985' => 'bca', 'BcaNung03989' => 'bca', 'BcaNung05661' => 'bca', 'BolC1t00257H' => 'bol', 'BolC1t01956H' => 'bol', 'BolC2t06534H' => 'bol', 'BolC3t14334H' => 'bol', 'BolC5t30451H' => 'bol', 'BolC7t45880H' => 'bol', 'BolC7t46586H' => 'bol', 'BolC8t49301H' => 'bol', 'BolC8t51837H' => 'bol', 'BolC9t56822H' => 'bol', 'BolC9t59235H' => 'bol', 'BraA01t00234Z' => 'bra', 'BraA01t01563Z' => 'bra', 'BraA02t05147Z' => 'bra', 'BraA03t10947Z' => 'bra', 'BraA03t14633Z' => 'bra', 'BraA08t35112Z' => 'bra', 'BraA09t41330Z' => 'bra', 'BraA10t44570Z' => 'bra', 'C01p02670' => 'bna', 'C01p20260' => 'bna', 'C02p05890' => 'bna', 'C03p19530' => 'bna', 'C05p17470' => 'bna', 'C07p53900' => 'bna', 'C07p61630' => 'bna', 'C08p16800' => 'bna', 'C08p42810' => 'bna', 'C09p39480' => 'bna', 'C09p63980' => 'bna', 'CAN.G1001.7' => 'can', 'CAN.G1034.55' => 'can', 'CAN.G143.7' => 'can', 'CAN.G3340.1' => 'can', 'CAN.G358.19' => 'can', 'CAN.G373.2' => 'can', 'CAN.G674.16' => 'can', 'CAN.G674.17' => 'can', 'CAN.G674.18' => 'can', 'CAN.G732.2' => 'can', 'CAN.G732.3' => 'can', 'CAN.G993.39' => 'can', 'CANSAT01G2052' => 'cansat', 'CANSAT80G0070' => 'cansat', 'CANSAT80G0483' => 'cansat', 'CANSAT80G0625' => 'cansat', 'CARHR019690' => 'chi', 'CARHR080280' => 'chi', 'CARHR152750' => 'chi', 'CARHR152760' => 'chi', 'CARHR152770' => 'chi', 'CARHR200340' => 'chi', 'CARHR232370' => 'chi', 'CARHR244670' => 'chi', 'CARHR244680' => 'chi', 'CARHR257520' => 'chi', 'Carub.0001s1872' => 'cru', 'Carub.0006s1130' => 'cru', 'Carub.0007s0396' => 'cru', 'Carub.0007s0397' => 'cru', 'Carub.0007s1608' => 'cru', 'Carub.0008s1068' => 'cru', 'Carub.0008s1077' => 'cru', 'Ca_16158_v3' => 'car', 'Ca_17571_v3' => 'car', 'Ca_21936_v3' => 'car', 'Ca_22350_v3' => 'car', 'CBR_g22445' => 'cbr', 'CBR_g26290' => 'cbr', 'Cc04_g09610' => 'ccan', 'Cc04_g12280' => 'ccan', 'Cc07_g10230' => 'ccan', 'CDE02G0093' => 'cde', 'CDE02G0701' => 'cde', 'CDE04G1050' => 'cde', 'CDE05G1833' => 'cde', 'CDE05G3058' => 'cde', 'CDE05G3380' => 'cde', 'CDE06G0536' => 'cde', 'Cfa006923' => 'cfa', 'Cfa009402' => 'cfa', 'Cfa018751' => 'cfa', 'Cfa019164' => 'cfa', 'Cfa022935' => 'cfa', 'Ciclev10019081m.g' => 'ccl', 'Ciclev10025076m.g' => 'ccl', 'Ciclev10030712m.g' => 'ccl', 'Ciclev10033760m.g' => 'ccl', 'CiPaw.05G105600' => 'cil', 'CiPaw.08G136700' => 'cil', 'CiPaw.11G003900' => 'cil', 'CiPaw.11G023700' => 'cil', 'CiPaw.12G003700' => 'cil', 'ClCG06G017100' => 'cla', 'ClCG06G018110' => 'cla', 'ClCG07G008800' => 'cla', 'ClCG07G015330' => 'cla', 'COL.COLO4_13698' => 'col', 'COL.COLO4_16659' => 'col', 'COL.COLO4_21986' => 'col', 'COL.COLO4_24049' => 'col', 'COL.COLO4_29061' => 'col', 'COL.COLO4_29075' => 'col', 'COL.COLO4_30094' => 'col', 'Cpa.g.c33689' => 'cpa', 'Cpa.g.sc108.39' => 'cpa', 'Cpa.g.sc108.41' => 'cpa', 'Cpa.g.sc1163.1' => 'cpa', 'Cpa.g.sc4.155' => 'cpa', 'Cpa.g.sc6.194' => 'cpa', 'CsaV3_1G000340' => 'csa', 'CsaV3_1G001400' => 'csa', 'CsaV3_4G002220' => 'csa', 'CsaV3_4G005370' => 'csa', 'CSS0007487' => 'camsi', 'CSS0008066' => 'camsi', 'CSS0009120' => 'camsi', 'CSS0015512' => 'camsi', 'CSS0022409' => 'camsi', 'CSS0025358' => 'camsi', 'CSS0044547' => 'camsi', 'DCAR_013057' => 'dca', 'DCAR_015058' => 'dca', 'DCAR_016027' => 'dca', 'DCAR_017327' => 'dca', 'DCAR_020743' => 'dca', 'DCAR_026157' => 'dca', 'DCAR_032339' => 'dca', 'DCAR_032340' => 'dca', 'Dinv11200' => 'din', 'Dinv11201' => 'din', 'Dinv20631' => 'din', 'Dinv23182' => 'din', 'Dinv33466' => 'din', 'Dinv33583' => 'din', 'Dinv38565' => 'din', 'Duzib068G0200' => 'dzi', 'Duzib147G0132' => 'dzi', 'Duzib147G0635' => 'dzi', 'Duzib205G1670' => 'dzi', 'Duzib251G0606' => 'dzi', 'ECA232G3336' => 'eca', 'ECA232G3763' => 'eca', 'ECA232G4845' => 'eca', 'ECA234G1607' => 'eca', 'ECA246G0932' => 'eca', 'ECA247G0781' => 'eca', 'ECA247G1932' => 'eca', 'ECA247G2079' => 'eca', 'ECA247G3338' => 'eca', 'ECA247G4115' => 'eca', 'EL10Ac3g06552' => 'bvu', 'EL10Ac5g10721' => 'bvu', 'EL10Ac5g10722' => 'bvu', 'EL10Ac5g10723' => 'bvu', 'EL10Ac5g11361' => 'bvu', 'EL10Ac6g13553' => 'bvu', 'EL10As8g23872' => 'bvu', 'Eucgr.B00250' => 'egr', 'Eucgr.B00251' => 'egr', 'Eucgr.B03533' => 'egr', 'Eucgr.I02381' => 'egr', 'Eucgr.K02700' => 'egr', 'FAN02G0174' => 'fan', 'FAN02G3146' => 'fan', 'FAN04G1672' => 'fan', 'FAN04G2273' => 'fan', 'FAN05G2791' => 'fan', 'FAN05G4035' => 'fan', 'FAN07G0834' => 'fan', 'FAN08G1198' => 'fan', 'FAN09G4182' => 'fan', 'FAN12G0496' => 'fan', 'FAN13G1027' => 'fan', 'FAN13G2951' => 'fan', 'FAN14G0705' => 'fan', 'FAN14G0720' => 'fan', 'FAN17G0201' => 'fan', 'FAN17G2665' => 'fan', 'FAN18G1456' => 'fan', 'FAN18G1525' => 'fan', 'FAN18G3500' => 'fan', 'FAN28G2670' => 'fan', 'FvH4_1g12391' => 'fve', 'FvH4_4g23220' => 'fve', 'FvH4_5g08810' => 'fve', 'FvH4_5g28960' => 'fve', 'FvH4_6g42820' => 'fve', 'FvH4_6g51110' => 'fve', 'Glyma.02G051802' => 'gma', 'Glyma.04G185300' => 'gma', 'Glyma.05G202900' => 'gma', 'Glyma.08G010300' => 'gma', 'Glyma.16G131900' => 'gma', 'Glyma.17G087900' => 'gma', 'Gohir.A07G048600' => 'ghi', 'Gohir.A11G179000' => 'ghi', 'Gohir.A12G140900' => 'ghi', 'Gohir.A12G140950' => 'ghi', 'Gohir.A12G191700' => 'ghi', 'Gohir.A13G086300' => 'ghi', 'Gohir.D07G052900' => 'ghi', 'Gohir.D11G186600' => 'ghi', 'Gohir.D12G145575' => 'ghi', 'Gohir.D12G145650' => 'ghi', 'Gohir.D12G145725' => 'ghi', 'Gohir.D12G194050' => 'ghi', 'Gohir.D13G091800' => 'ghi', 'Gorai.001G055900' => 'gra', 'Gorai.007G198400' => 'gra', 'Gorai.008G157000' => 'gra', 'Gorai.008G157100' => 'gra', 'Gorai.008G208700' => 'gra', 'Gorai.010G138700' => 'gra', 'GSVIVG01000977001' => 'vvi', 'GSVIVG01007708001' => 'vvi', 'GSVIVG01008587001' => 'vvi', 'GSVIVG01018849001' => 'vvi', 'GSVIVG01032432001' => 'vvi', 'HanXRQChr02g0034131' => 'han', 'HanXRQChr02g0035981' => 'han', 'HanXRQChr02g0035991' => 'han', 'HanXRQChr05g0155611' => 'han', 'HanXRQChr05g0155621' => 'han', 'HanXRQChr08g0236501' => 'han', 'HanXRQChr09g0261321' => 'han', 'HanXRQChr09g0272081' => 'han', 'HanXRQChr10g0310741' => 'han', 'HanXRQChr11g0325591' => 'han', 'HanXRQChr12g0385691' => 'han', 'HanXRQChr13g0387801' => 'han', 'HanXRQChr15g0463011' => 'han', 'Haze_03826' => 'cav', 'Haze_03827' => 'cav', 'Haze_07183' => 'cav', 'Haze_07537' => 'cav', 'Haze_07539' => 'cav', 'Haze_12461' => 'cav', 'Haze_16115' => 'cav', 'Haze_16808' => 'cav', 'Haze_18531' => 'cav', 'Hma1.2p1_0046F.1_g026700' => 'hma', 'Hma1.2p1_0046F.1_g026710' => 'hma', 'Hma1.2p1_0168F.1_g074340' => 'hma', 'Hma1.2p1_0266F.1_g107030' => 'hma', 'Hma1.2p1_0266F.1_g107060' => 'hma', 'Hma1.2p1_0275F.1_g110510' => 'hma', 'Hma1.2p1_0592F.1_g185490' => 'hma', 'Hma1.2p1_0592F.1_g185500' => 'hma', 'Hma1.2p1_0592F.1_g185510' => 'hma', 'Hma1.2p1_0592F.1_g185520' => 'hma', 'Hma1.2p1_0592F.1_g185530' => 'hma', 'Hma1.2p1_0818F.1_g223450' => 'hma', 'HPP92_009708' => 'vpl', 'HPP92_009793' => 'vpl', 'HPP92_009796' => 'vpl', 'HPP92_009797' => 'vpl', 'HPP92_014940' => 'vpl', 'HPP92_014988' => 'vpl', 'Hund02463' => 'sun', 'Hund02760' => 'sun', 'Hund05071' => 'sun', 'Hund10108' => 'sun', 'Hund11204' => 'sun', 'Hund14016' => 'sun', 'Hund16464' => 'sun', 'Lalb_Chr09g0333391' => 'lal', 'Lalb_Chr11g0070461' => 'lal', 'Lalb_Chr12g0201671' => 'lal', 'Lalb_Chr13g0297161' => 'lal', 'Lj1g0002823' => 'lja', 'Lj3C1074T6' => 'lonja', 'Lj4A212T28' => 'lonja', 'Lj4g0005516' => 'lja', 'Lj4g0013705' => 'lja', 'Lj4g0027865' => 'lja', 'Lj5C92G16' => 'lonja', 'Lj5C92T12' => 'lonja', 'Lj7C596T3' => 'lonja', 'Lj9A446G59' => 'lonja', 'Lj9A482G21' => 'lonja', 'Lsat_1_v5_gn_1_28261' => 'lsa', 'Lsat_1_v5_gn_1_28281' => 'lsa', 'Lsat_1_v5_gn_1_32721' => 'lsa', 'Lsat_1_v5_gn_4_151760' => 'lsa', 'Lsat_1_v5_gn_4_2120' => 'lsa', 'Lsat_1_v5_gn_4_75761' => 'lsa', 'Lsat_1_v5_gn_5_10920' => 'lsa', 'Manes.02G099900' => 'mes', 'Manes.11G096200' => 'mes', 'Manes.12G007200' => 'mes', 'Manes.14G048300' => 'mes', 'Manes.17G114700' => 'mes', 'Mapoly0002s0070' => 'mpo', 'Mapoly0029s0099' => 'mpo', 'MBI07_g24742_MAGBIO' => 'mbi', 'MBI10_g27988_MAGBIO' => 'mbi', 'MBI11_g13057_MAGBIO' => 'mbi', 'MD02G1137200' => 'mdo', 'MD06G1137200' => 'mdo', 'MD07G1122300' => 'mdo', 'MD09G1078200' => 'mdo', 'MD13G1123700' => 'mdo', 'MD14G1151900' => 'mdo', 'MD17G1030900' => 'mdo', 'MD17G1068200' => 'mdo', 'MD17G1068600' => 'mdo', 'Medtr3g077540' => 'mtr', 'Medtr4g105530' => 'mtr', 'Medtr8g076580' => 'mtr', 'Medtr8g076590' => 'mtr', 'Medtr8g096410' => 'mtr', 'MELO3C016411.2' => 'cme', 'MELO3C017780.2' => 'cme', 'MELO3C022560.2' => 'cme', 'MELO3C026187.2' => 'cme', 'MELO3C026286.2' => 'cme', 'MELO3C032854.2' => 'cme', 'Migut.H02495' => 'egut', 'Migut.I00561' => 'egut', 'Migut.K01015' => 'egut', 'Migut.K01016' => 'egut', 'Migut.L00743' => 'egut', 'Migut.L00744' => 'egut', 'Migut.L00746' => 'egut', 'Migut.L00798' => 'egut', 'Migut.L00799' => 'egut', 'Migut.N02096' => 'egut', 'MSTRG.11259' => 'ama', 'MSTRG.23142' => 'ama', 'MSTRG.2499' => 'ama', 'Nitab4.5_0000003g0730' => 'nta', 'Nitab4.5_0000137g0020' => 'nta', 'Nitab4.5_0000721g0210' => 'nta', 'Nitab4.5_0000723g0050' => 'nta', 'Nitab4.5_0000913g0070' => 'nta', 'Nitab4.5_0001332g0040' => 'nta', 'Nitab4.5_0001771g0050' => 'nta', 'Nitab4.5_0001918g0050' => 'nta', 'Nitab4.5_0002686g0030' => 'nta', 'Nitab4.5_0003156g0020' => 'nta', 'Nitab4.5_0003383g0040' => 'nta', 'Nitab4.5_0003918g0010' => 'nta', 'Nitab4.5_0006760g0010' => 'nta', 'Nn1g05981' => 'nnu', 'Nn1g06288' => 'nnu', 'Nn3g16371' => 'nnu', 'Nn3g16786' => 'nnu', 'Nn4g22232' => 'nnu', 'Oeu005144.1' => 'oeu', 'Oeu005145.1' => 'oeu', 'Oeu011348.1' => 'oeu', 'Oeu016415.1' => 'oeu', 'Oeu023501.1' => 'oeu', 'Oeu044473.1' => 'oeu', 'Oeu048892.2' => 'oeu', 'Os01g0549200' => 'osa', 'Os02g0469300' => 'osa', 'Os04g0311100' => 'osa', 'Os06g0474900' => 'osa', 'Os10g0181700' => 'osa', 'Os11g0454800' => 'osa', 'Peaxi162Scf00037g00714' => 'pax', 'Peaxi162Scf00084g01217' => 'pax', 'Peaxi162Scf00257g00217' => 'pax', 'Peaxi162Scf00516g00215' => 'pax', 'Peaxi162Scf00689g00123' => 'pax', 'PGR044G2719' => 'pgr', 'PGR083G1360' => 'pgr', 'PGR102G2849' => 'pgr', 'PGR119G2534' => 'pgr', 'PGSC0003DMG400003538' => 'stu', 'PGSC0003DMG400028138' => 'stu', 'PGSC0003DMG400031732' => 'stu', 'PGSC0003DMG400038165' => 'stu', 'Phvul.002G284600' => 'pvu', 'Phvul.003G258200' => 'pvu', 'Phvul.009G176500' => 'pvu', 'Potri.003G167201' => 'ptr', 'Potri.005G118400' => 'ptr', 'Potri.012G089000' => 'ptr', 'Potri.012G102800' => 'ptr', 'Potri.015G079400' => 'ptr', 'Potri.015G100900' => 'ptr', 'Pp3c14_9810' => 'ppa', 'Pp3c15_10450' => 'ppa', 'Pp3c20_19150' => 'ppa', 'Pp3c23_12740' => 'ppa', 'Pp3c23_6310' => 'ppa', 'Pp3c24_3720' => 'ppa', 'Pp3c27_2580' => 'ppa', 'Pp3c9_8990' => 'ppa', 'PRCOL_00002854' => 'pco', 'Prupe.1G221200' => 'ppe', 'Prupe.3G289000' => 'ppe', 'Prupe.5G147000' => 'ppe', 'Prupe.6G157300' => 'ppe', 'Prupe.7G163400' => 'ppe', 'Psat0s2177g0040' => 'psa', 'Psat3g174760' => 'psa', 'Psat3g192160' => 'psa', 'Psat4g058520' => 'psa', 'Psat4g096840' => 'psa', 'Psat7g037320' => 'psa', 'PSO017G1274' => 'pso', 'PSO017G5166' => 'pso', 'PSO063G4558' => 'pso', 'PSO170G4458' => 'pso', 'PSO170G5005' => 'pso', 'PSO210G6156' => 'pso', 'PSO210G6635' => 'pso', 'PSO210G7397' => 'pso', 'PSO210G7700' => 'pso', 'PSO455G0035' => 'pso', 'PSO455G0180' => 'pso', 'PSO478G4515' => 'pso', 'PSO832G1305' => 'pso', 'PSO832G3489' => 'pso', 'QL02p075247' => 'qlo', 'QL03p051148' => 'qlo', 'QL05p010313' => 'qlo', 'QL06p034627' => 'qlo', 'QL10p001889' => 'qlo', 'QL10p010846' => 'qlo', 'RcHm_v2.0_Chr1g0350621' => 'rch', 'RcHm_v2.0_Chr1g0350641' => 'rch', 'RcHm_v2.0_Chr2g0092891' => 'rch', 'RcHm_v2.0_Chr2g0100251' => 'rch', 'RcHm_v2.0_Chr2g0158661' => 'rch', 'RcHm_v2.0_Chr2g0172741' => 'rch', 'RcHm_v2.0_Chr4g0429571' => 'rch', 'RcHm_v2.0_Chr5g0042471' => 'rch', 'RcHm_v2.0_Chr7g0189451' => 'rch', 'Rhsim08G0052000' => 'rsi', 'Rhsim08G0174400' => 'rsi', 'Rhsim08G0193200' => 'rsi', 'Rhsim10G0214800' => 'rsi', 'Rhsim10G0214900' => 'rsi', 'Rhsim10G0215000' => 'rsi', 'Rhsim12G0022900' => 'rsi', 'Rhsim12G0177500' => 'rsi', 'Rhsim12G0177700' => 'rsi', 'Sabra03G0122600' => 'sbr', 'Sabra05G0097400' => 'sbr', 'Sabra12G0064100' => 'sbr', 'Sabra15G0121300' => 'sbr', 'SalBow2G0642' => 'sbo', 'SalBow5G2667' => 'sbo', 'SalBow5G4873' => 'sbo', 'SalBow8G2395' => 'sbo', 'Sc03g0003290' => 'sci', 'Sc10g0010130' => 'sci', 'Sc22g0003650' => 'sci', 'Sed0001603' => 'sed', 'Sed0004259' => 'sed', 'Sed0006789' => 'sed', 'Sed0011838' => 'sed', 'Sed0012964' => 'sed', 'Sed0016383' => 'sed', 'Sed0019010' => 'sed', 'Sed0020188' => 'sed', 'SEGI_04702' => 'sgi', 'SEGI_17231' => 'sgi', 'SEGI_18877' => 'sgi', 'SEGI_25196' => 'sgi', 'SEGI_25515' => 'sgi', 'SEGI_28445' => 'sgi', 'SEGI_37452' => 'sgi', 'SGA_v2.0_scaffold188G40336' => 'sas', 'SGA_v2.0_scaffold228G43247' => 'sas', 'SGA_v2.0_scaffold280G46853' => 'sas', 'SGA_v2.0_scaffold34G13808' => 'sas', 'SGA_v2.0_scaffold40G15576' => 'sas', 'SGA_v2.0_scaffold611G53188' => 'sas', 'SGA_v2.0_scaffold78G25461' => 'sas', 'SGA_v2.0_scaffold90G27888' => 'sas', 'SHI08601' => 'shi', 'SHI08606' => 'shi', 'SHI17117' => 'shi', 'SHI17119' => 'shi', 'SMO118G0201' => 'smo', 'SMO169G0247' => 'smo', 'SMO176G0006' => 'smo', 'SMO176G0015' => 'smo', 'SMO202G0006' => 'smo', 'SMO240G0050' => 'smo', 'SMO286G0009' => 'smo', 'SMO338G0033' => 'smo', 'SMO356G0533' => 'smo', 'SMO364G0382' => 'smo', 'SMO367G0166' => 'smo', 'SMO367G1098' => 'smo', 'Solyc01g009920.3' => 'sly', 'Solyc01g099300.3' => 'sly', 'Solyc02g084700.3' => 'sly', 'Solyc03g097520.3' => 'sly', 'Solyc06g071580.3' => 'sly', 'Solyc10g081760.3' => 'sly', 'Sopen01g005480' => 'spe', 'Sopen01g042850' => 'spe', 'Sopen02g029370' => 'spe', 'Sopen03g028280' => 'spe', 'Sopen06g027870' => 'spe', 'Sopen10g032270' => 'spe', 'Sp5g18180' => 'spa', 'Sp6g12880' => 'spa', 'Sp6g30850' => 'spa', 'Sp7g22960' => 'spa', 'Sp7g34010' => 'spa', 'SpUn1326_0010' => 'spa', 'TAR371G0242' => 'tar', 'TAR622G0638' => 'tar', 'TAR628G1548' => 'tar', 'TAR629G1079' => 'tar', 'TAR629G3413' => 'tar', 'THA.LOC104804249' => 'tha', 'THA.LOC104808315' => 'tha', 'THA.LOC104809238' => 'tha', 'THA.LOC104825484' => 'tha', 'Thecc.01G025500' => 'tca', 'Thecc.03G015800' => 'tca', 'Thecc.03G018000' => 'tca', 'Thecc.03G134800' => 'tca', 'Thecc.04G014700' => 'tca', 'Thhalv10006991m.g' => 'esa', 'Thhalv10012707m.g' => 'esa', 'Thhalv10015739m.g' => 'esa', 'Thhalv10024553m.g' => 'esa', 'Thhalv10024673m.g' => 'esa', 'Thhalv10029187m.g' => 'esa', 'TPR.G12971' => 'tpr', 'TPR.G29396' => 'tpr', 'TPR.G33376' => 'tpr', 'TPR.G35508' => 'tpr', 'TPR.G35516' => 'tpr', 'TPR.G37317' => 'tpr', 'TPR.G37389' => 'tpr', 'TPR.G37523' => 'tpr', 'TPR.G559' => 'tpr', 'TWI14G0070' => 'twi', 'TWI14G0729' => 'twi', 'TWI18G0596' => 'twi', 'TWI39G0780' => 'twi', 'TWI39G0850' => 'twi', 'TWI73G1052' => 'twi', 'unitig_52.g17485' => 'ugi', 'unitig_61.g26355' => 'ugi', 'vmacro01040' => 'vma', 'vmacro16731' => 'vma', 'vmacro18270' => 'vma', 'vmacro19142' => 'vma', 'vmacro19407' => 'vma', 'vmacro19408' => 'vma', 'vmacro21899' => 'vma', 'vmacro21900' => 'vma', 'vmacro21901' => 'vma', 'VMungo0251G0490' => 'vmu', 'VMungo0251G1748' => 'vmu', 'VMungo1309G0421' => 'vmu', 'Zm00001eb086500' => 'zma', 'Zm00001eb150680' => 'zma', 'Zm00001eb162330' => 'zma', 'Zm00001eb203130' => 'zma', 'Zm00001eb369480' => 'zma', 'Zm00001eb382340' => 'zma', 'Zm00001eb416360' => 'zma' ) $gf_id = 'HOM05D000902' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000902' ) $data_identifier = 'HOM05D000902' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 13, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 10, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 6, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 9, 'hma' => (int) 12, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 4, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 6, 'ppa' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 6, 'rch' => (int) 9, 'rsi' => (int) 9, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 12, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 3, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416360' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000902', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '663', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02470' => 'bna', 'A01p16260' => 'bna', 'A02p01680' => 'bna', 'A03p16600' => 'bna', 'A03p55660' => 'bna', 'A03p64160' => 'bna', 'A03p64170' => 'bna', 'A08p31900' => 'bna', 'A09p59530' => 'bna', 'A10p08230' => 'bna', 'A10p25090' => 'bna', 'Aa31LG3G7100' => 'aar', 'Aa31LG3G7110' => 'aar', 'Aa31LG6G13160' => 'aar', 'Aa31LG7G10770' => 'aar', 'Aa31LG7G3830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2723' => 'aag', 'Actinidia08045' => 'ach', 'Actinidia08888' => 'ach', 'Actinidia18333' => 'ach', 'Actinidia19334' => 'ach', 'Actinidia25552' => 'ach', 'Actinidia26089' => 'ach', 'Actinidia30615' => 'ach', 'Actinidia30616' => 'ach', 'Actinidia33083' => 'ach', 'Actinidia35762' => 'ach', 'Ah.02g110620' => 'amhyb', 'Ah.11g046390' => 'amhyb', 'AL1G31670' => 'aly', 'AL6G23730' => 'aly', 'AL7G14740' => 'aly', 'AL7G14750' => 'aly', 'AL7G14760' => 'aly', 'AL7G28220' => 'aly', 'AL8G24940' => 'aly', 'Aqoxy3G01665' => 'aox', 'Aqoxy3G02853' => 'aox', 'Aqoxy5G01513' => 'aox', 'Aqoxy5G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8SKA4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ75LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKDA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0LJZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7REX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZP4YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWX7I5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2QKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS0L9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPCD8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q161UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC7XCF' => 'arhy', 'AT1G19100' => 'ath', 'AT4G24970' => 'ath', 'AT4G36270' => 'ath', 'AT4G36280' => 'ath', 'AT4G36290' => 'ath', 'AT5G13130' => 'ath', 'AT5G50780' => 'ath', 'ATR0582G266' => 'atr', 'ATR0661G195' => 'atr', 'ATR1152G031' => 'atr', 'Atru.chr11.2382' => 'acertr', 'Atru.chr12.2337' => 'acertr', 'Atru.chr3.744' => 'acertr', 'Atru.chr6.1870' => 'acertr', 'Atru.chr9.2515' => 'acertr', 'AUR62004120' => 'cqu', 'AUR62005667' => 'cqu', 'AUR62007634' => 'cqu', 'AUR62008186' => 'cqu', 'AUR62008187' => 'cqu', 'AUR62008188' => 'cqu', 'AUR62027954' => 'cqu', 'AUR62028766' => 'cqu', 'AUR62028767' => 'cqu', 'AUR62028768' => 'cqu', 'AUR62028886' => 'cqu', 'AUR62029563' => 'cqu', 'AUR62038832' => 'cqu', 'BcaB01g04149' => 'bca', 'BcaB03g12940' => 'bca', 'BcaB03g13090' => 'bca', 'BcaB03g14466' => 'bca', 'BcaB05g24035' => 'bca', 'BcaC01g06050' => 'bca', 'BcaC04g19148' => 'bca', 'BcaC04g20761' => 'bca', 'BcaC06g32845' => 'bca', 'BcaC07g41274' => 'bca', 'BcaC09g50827' => 'bca', 'BcaNung00741' => 'bca', 'BcaNung00742' => 'bca', 'BcaNung01859' => 'bca', 'BcaNung03985' => 'bca', 'BcaNung03989' => 'bca', 'BcaNung05661' => 'bca', 'BolC1t00257H' => 'bol', 'BolC1t01956H' => 'bol', 'BolC2t06534H' => 'bol', 'BolC3t14334H' => 'bol', 'BolC5t30451H' => 'bol', 'BolC7t45880H' => 'bol', 'BolC7t46586H' => 'bol', 'BolC8t49301H' => 'bol', 'BolC8t51837H' => 'bol', 'BolC9t56822H' => 'bol', 'BolC9t59235H' => 'bol', 'BraA01t00234Z' => 'bra', 'BraA01t01563Z' => 'bra', 'BraA02t05147Z' => 'bra', 'BraA03t10947Z' => 'bra', 'BraA03t14633Z' => 'bra', 'BraA08t35112Z' => 'bra', 'BraA09t41330Z' => 'bra', 'BraA10t44570Z' => 'bra', 'C01p02670' => 'bna', 'C01p20260' => 'bna', 'C02p05890' => 'bna', 'C03p19530' => 'bna', 'C05p17470' => 'bna', 'C07p53900' => 'bna', 'C07p61630' => 'bna', 'C08p16800' => 'bna', 'C08p42810' => 'bna', 'C09p39480' => 'bna', 'C09p63980' => 'bna', 'CAN.G1001.7' => 'can', 'CAN.G1034.55' => 'can', 'CAN.G143.7' => 'can', 'CAN.G3340.1' => 'can', 'CAN.G358.19' => 'can', 'CAN.G373.2' => 'can', 'CAN.G674.16' => 'can', 'CAN.G674.17' => 'can', 'CAN.G674.18' => 'can', 'CAN.G732.2' => 'can', 'CAN.G732.3' => 'can', 'CAN.G993.39' => 'can', 'CANSAT01G2052' => 'cansat', 'CANSAT80G0070' => 'cansat', 'CANSAT80G0483' => 'cansat', 'CANSAT80G0625' => 'cansat', 'CARHR019690' => 'chi', 'CARHR080280' => 'chi', 'CARHR152750' => 'chi', 'CARHR152760' => 'chi', 'CARHR152770' => 'chi', 'CARHR200340' => 'chi', 'CARHR232370' => 'chi', 'CARHR244670' => 'chi', 'CARHR244680' => 'chi', 'CARHR257520' => 'chi', 'Carub.0001s1872' => 'cru', 'Carub.0006s1130' => 'cru', 'Carub.0007s0396' => 'cru', 'Carub.0007s0397' => 'cru', 'Carub.0007s1608' => 'cru', 'Carub.0008s1068' => 'cru', 'Carub.0008s1077' => 'cru', 'Ca_16158_v3' => 'car', 'Ca_17571_v3' => 'car', 'Ca_21936_v3' => 'car', 'Ca_22350_v3' => 'car', 'CBR_g22445' => 'cbr', 'CBR_g26290' => 'cbr', 'Cc04_g09610' => 'ccan', 'Cc04_g12280' => 'ccan', 'Cc07_g10230' => 'ccan', 'CDE02G0093' => 'cde', 'CDE02G0701' => 'cde', 'CDE04G1050' => 'cde', 'CDE05G1833' => 'cde', 'CDE05G3058' => 'cde', 'CDE05G3380' => 'cde', 'CDE06G0536' => 'cde', 'Cfa006923' => 'cfa', 'Cfa009402' => 'cfa', 'Cfa018751' => 'cfa', 'Cfa019164' => 'cfa', 'Cfa022935' => 'cfa', 'Ciclev10019081m.g' => 'ccl', 'Ciclev10025076m.g' => 'ccl', 'Ciclev10030712m.g' => 'ccl', 'Ciclev10033760m.g' => 'ccl', 'CiPaw.05G105600' => 'cil', 'CiPaw.08G136700' => 'cil', 'CiPaw.11G003900' => 'cil', 'CiPaw.11G023700' => 'cil', 'CiPaw.12G003700' => 'cil', 'ClCG06G017100' => 'cla', 'ClCG06G018110' => 'cla', 'ClCG07G008800' => 'cla', 'ClCG07G015330' => 'cla', 'COL.COLO4_13698' => 'col', 'COL.COLO4_16659' => 'col', 'COL.COLO4_21986' => 'col', 'COL.COLO4_24049' => 'col', 'COL.COLO4_29061' => 'col', 'COL.COLO4_29075' => 'col', 'COL.COLO4_30094' => 'col', 'Cpa.g.c33689' => 'cpa', 'Cpa.g.sc108.39' => 'cpa', 'Cpa.g.sc108.41' => 'cpa', 'Cpa.g.sc1163.1' => 'cpa', 'Cpa.g.sc4.155' => 'cpa', 'Cpa.g.sc6.194' => 'cpa', 'CsaV3_1G000340' => 'csa', 'CsaV3_1G001400' => 'csa', 'CsaV3_4G002220' => 'csa', 'CsaV3_4G005370' => 'csa', 'CSS0007487' => 'camsi', 'CSS0008066' => 'camsi', 'CSS0009120' => 'camsi', 'CSS0015512' => 'camsi', 'CSS0022409' => 'camsi', 'CSS0025358' => 'camsi', 'CSS0044547' => 'camsi', 'DCAR_013057' => 'dca', 'DCAR_015058' => 'dca', 'DCAR_016027' => 'dca', 'DCAR_017327' => 'dca', 'DCAR_020743' => 'dca', 'DCAR_026157' => 'dca', 'DCAR_032339' => 'dca', 'DCAR_032340' => 'dca', 'Dinv11200' => 'din', 'Dinv11201' => 'din', 'Dinv20631' => 'din', 'Dinv23182' => 'din', 'Dinv33466' => 'din', 'Dinv33583' => 'din', 'Dinv38565' => 'din', 'Duzib068G0200' => 'dzi', 'Duzib147G0132' => 'dzi', 'Duzib147G0635' => 'dzi', 'Duzib205G1670' => 'dzi', 'Duzib251G0606' => 'dzi', 'ECA232G3336' => 'eca', 'ECA232G3763' => 'eca', 'ECA232G4845' => 'eca', 'ECA234G1607' => 'eca', 'ECA246G0932' => 'eca', 'ECA247G0781' => 'eca', 'ECA247G1932' => 'eca', 'ECA247G2079' => 'eca', 'ECA247G3338' => 'eca', 'ECA247G4115' => 'eca', 'EL10Ac3g06552' => 'bvu', 'EL10Ac5g10721' => 'bvu', 'EL10Ac5g10722' => 'bvu', 'EL10Ac5g10723' => 'bvu', 'EL10Ac5g11361' => 'bvu', 'EL10Ac6g13553' => 'bvu', 'EL10As8g23872' => 'bvu', 'Eucgr.B00250' => 'egr', 'Eucgr.B00251' => 'egr', 'Eucgr.B03533' => 'egr', 'Eucgr.I02381' => 'egr', 'Eucgr.K02700' => 'egr', 'FAN02G0174' => 'fan', 'FAN02G3146' => 'fan', 'FAN04G1672' => 'fan', 'FAN04G2273' => 'fan', 'FAN05G2791' => 'fan', 'FAN05G4035' => 'fan', 'FAN07G0834' => 'fan', 'FAN08G1198' => 'fan', 'FAN09G4182' => 'fan', 'FAN12G0496' => 'fan', 'FAN13G1027' => 'fan', 'FAN13G2951' => 'fan', 'FAN14G0705' => 'fan', 'FAN14G0720' => 'fan', 'FAN17G0201' => 'fan', 'FAN17G2665' => 'fan', 'FAN18G1456' => 'fan', 'FAN18G1525' => 'fan', 'FAN18G3500' => 'fan', 'FAN28G2670' => 'fan', 'FvH4_1g12391' => 'fve', 'FvH4_4g23220' => 'fve', 'FvH4_5g08810' => 'fve', 'FvH4_5g28960' => 'fve', 'FvH4_6g42820' => 'fve', 'FvH4_6g51110' => 'fve', 'Glyma.02G051802' => 'gma', 'Glyma.04G185300' => 'gma', 'Glyma.05G202900' => 'gma', 'Glyma.08G010300' => 'gma', 'Glyma.16G131900' => 'gma', 'Glyma.17G087900' => 'gma', 'Gohir.A07G048600' => 'ghi', 'Gohir.A11G179000' => 'ghi', 'Gohir.A12G140900' => 'ghi', 'Gohir.A12G140950' => 'ghi', 'Gohir.A12G191700' => 'ghi', 'Gohir.A13G086300' => 'ghi', 'Gohir.D07G052900' => 'ghi', 'Gohir.D11G186600' => 'ghi', 'Gohir.D12G145575' => 'ghi', 'Gohir.D12G145650' => 'ghi', 'Gohir.D12G145725' => 'ghi', 'Gohir.D12G194050' => 'ghi', 'Gohir.D13G091800' => 'ghi', 'Gorai.001G055900' => 'gra', 'Gorai.007G198400' => 'gra', 'Gorai.008G157000' => 'gra', 'Gorai.008G157100' => 'gra', 'Gorai.008G208700' => 'gra', 'Gorai.010G138700' => 'gra', 'GSVIVG01000977001' => 'vvi', 'GSVIVG01007708001' => 'vvi', 'GSVIVG01008587001' => 'vvi', 'GSVIVG01018849001' => 'vvi', 'GSVIVG01032432001' => 'vvi', 'HanXRQChr02g0034131' => 'han', 'HanXRQChr02g0035981' => 'han', 'HanXRQChr02g0035991' => 'han', 'HanXRQChr05g0155611' => 'han', 'HanXRQChr05g0155621' => 'han', 'HanXRQChr08g0236501' => 'han', 'HanXRQChr09g0261321' => 'han', 'HanXRQChr09g0272081' => 'han', 'HanXRQChr10g0310741' => 'han', 'HanXRQChr11g0325591' => 'han', 'HanXRQChr12g0385691' => 'han', 'HanXRQChr13g0387801' => 'han', 'HanXRQChr15g0463011' => 'han', 'Haze_03826' => 'cav', 'Haze_03827' => 'cav', 'Haze_07183' => 'cav', 'Haze_07537' => 'cav', 'Haze_07539' => 'cav', 'Haze_12461' => 'cav', 'Haze_16115' => 'cav', 'Haze_16808' => 'cav', 'Haze_18531' => 'cav', 'Hma1.2p1_0046F.1_g026700' => 'hma', 'Hma1.2p1_0046F.1_g026710' => 'hma', 'Hma1.2p1_0168F.1_g074340' => 'hma', 'Hma1.2p1_0266F.1_g107030' => 'hma', 'Hma1.2p1_0266F.1_g107060' => 'hma', 'Hma1.2p1_0275F.1_g110510' => 'hma', 'Hma1.2p1_0592F.1_g185490' => 'hma', 'Hma1.2p1_0592F.1_g185500' => 'hma', 'Hma1.2p1_0592F.1_g185510' => 'hma', 'Hma1.2p1_0592F.1_g185520' => 'hma', 'Hma1.2p1_0592F.1_g185530' => 'hma', 'Hma1.2p1_0818F.1_g223450' => 'hma', 'HPP92_009708' => 'vpl', 'HPP92_009793' => 'vpl', 'HPP92_009796' => 'vpl', 'HPP92_009797' => 'vpl', 'HPP92_014940' => 'vpl', 'HPP92_014988' => 'vpl', 'Hund02463' => 'sun', 'Hund02760' => 'sun', 'Hund05071' => 'sun', 'Hund10108' => 'sun', 'Hund11204' => 'sun', 'Hund14016' => 'sun', 'Hund16464' => 'sun', 'Lalb_Chr09g0333391' => 'lal', 'Lalb_Chr11g0070461' => 'lal', 'Lalb_Chr12g0201671' => 'lal', 'Lalb_Chr13g0297161' => 'lal', 'Lj1g0002823' => 'lja', 'Lj3C1074T6' => 'lonja', 'Lj4A212T28' => 'lonja', 'Lj4g0005516' => 'lja', 'Lj4g0013705' => 'lja', 'Lj4g0027865' => 'lja', 'Lj5C92G16' => 'lonja', 'Lj5C92T12' => 'lonja', 'Lj7C596T3' => 'lonja', 'Lj9A446G59' => 'lonja', 'Lj9A482G21' => 'lonja', 'Lsat_1_v5_gn_1_28261' => 'lsa', 'Lsat_1_v5_gn_1_28281' => 'lsa', 'Lsat_1_v5_gn_1_32721' => 'lsa', 'Lsat_1_v5_gn_4_151760' => 'lsa', 'Lsat_1_v5_gn_4_2120' => 'lsa', 'Lsat_1_v5_gn_4_75761' => 'lsa', 'Lsat_1_v5_gn_5_10920' => 'lsa', 'Manes.02G099900' => 'mes', 'Manes.11G096200' => 'mes', 'Manes.12G007200' => 'mes', 'Manes.14G048300' => 'mes', 'Manes.17G114700' => 'mes', 'Mapoly0002s0070' => 'mpo', 'Mapoly0029s0099' => 'mpo', 'MBI07_g24742_MAGBIO' => 'mbi', 'MBI10_g27988_MAGBIO' => 'mbi', 'MBI11_g13057_MAGBIO' => 'mbi', 'MD02G1137200' => 'mdo', 'MD06G1137200' => 'mdo', 'MD07G1122300' => 'mdo', 'MD09G1078200' => 'mdo', 'MD13G1123700' => 'mdo', 'MD14G1151900' => 'mdo', 'MD17G1030900' => 'mdo', 'MD17G1068200' => 'mdo', 'MD17G1068600' => 'mdo', 'Medtr3g077540' => 'mtr', 'Medtr4g105530' => 'mtr', 'Medtr8g076580' => 'mtr', 'Medtr8g076590' => 'mtr', 'Medtr8g096410' => 'mtr', 'MELO3C016411.2' => 'cme', 'MELO3C017780.2' => 'cme', 'MELO3C022560.2' => 'cme', 'MELO3C026187.2' => 'cme', 'MELO3C026286.2' => 'cme', 'MELO3C032854.2' => 'cme', 'Migut.H02495' => 'egut', 'Migut.I00561' => 'egut', 'Migut.K01015' => 'egut', 'Migut.K01016' => 'egut', 'Migut.L00743' => 'egut', 'Migut.L00744' => 'egut', 'Migut.L00746' => 'egut', 'Migut.L00798' => 'egut', 'Migut.L00799' => 'egut', 'Migut.N02096' => 'egut', 'MSTRG.11259' => 'ama', 'MSTRG.23142' => 'ama', 'MSTRG.2499' => 'ama', 'Nitab4.5_0000003g0730' => 'nta', 'Nitab4.5_0000137g0020' => 'nta', 'Nitab4.5_0000721g0210' => 'nta', 'Nitab4.5_0000723g0050' => 'nta', 'Nitab4.5_0000913g0070' => 'nta', 'Nitab4.5_0001332g0040' => 'nta', 'Nitab4.5_0001771g0050' => 'nta', 'Nitab4.5_0001918g0050' => 'nta', 'Nitab4.5_0002686g0030' => 'nta', 'Nitab4.5_0003156g0020' => 'nta', 'Nitab4.5_0003383g0040' => 'nta', 'Nitab4.5_0003918g0010' => 'nta', 'Nitab4.5_0006760g0010' => 'nta', 'Nn1g05981' => 'nnu', 'Nn1g06288' => 'nnu', 'Nn3g16371' => 'nnu', 'Nn3g16786' => 'nnu', 'Nn4g22232' => 'nnu', 'Oeu005144.1' => 'oeu', 'Oeu005145.1' => 'oeu', 'Oeu011348.1' => 'oeu', 'Oeu016415.1' => 'oeu', 'Oeu023501.1' => 'oeu', 'Oeu044473.1' => 'oeu', 'Oeu048892.2' => 'oeu', 'Os01g0549200' => 'osa', 'Os02g0469300' => 'osa', 'Os04g0311100' => 'osa', 'Os06g0474900' => 'osa', 'Os10g0181700' => 'osa', 'Os11g0454800' => 'osa', 'Peaxi162Scf00037g00714' => 'pax', 'Peaxi162Scf00084g01217' => 'pax', 'Peaxi162Scf00257g00217' => 'pax', 'Peaxi162Scf00516g00215' => 'pax', 'Peaxi162Scf00689g00123' => 'pax', 'PGR044G2719' => 'pgr', 'PGR083G1360' => 'pgr', 'PGR102G2849' => 'pgr', 'PGR119G2534' => 'pgr', 'PGSC0003DMG400003538' => 'stu', 'PGSC0003DMG400028138' => 'stu', 'PGSC0003DMG400031732' => 'stu', 'PGSC0003DMG400038165' => 'stu', 'Phvul.002G284600' => 'pvu', 'Phvul.003G258200' => 'pvu', 'Phvul.009G176500' => 'pvu', 'Potri.003G167201' => 'ptr', 'Potri.005G118400' => 'ptr', 'Potri.012G089000' => 'ptr', 'Potri.012G102800' => 'ptr', 'Potri.015G079400' => 'ptr', 'Potri.015G100900' => 'ptr', 'Pp3c14_9810' => 'ppa', 'Pp3c15_10450' => 'ppa', 'Pp3c20_19150' => 'ppa', 'Pp3c23_12740' => 'ppa', 'Pp3c23_6310' => 'ppa', 'Pp3c24_3720' => 'ppa', 'Pp3c27_2580' => 'ppa', 'Pp3c9_8990' => 'ppa', 'PRCOL_00002854' => 'pco', 'Prupe.1G221200' => 'ppe', 'Prupe.3G289000' => 'ppe', 'Prupe.5G147000' => 'ppe', 'Prupe.6G157300' => 'ppe', 'Prupe.7G163400' => 'ppe', 'Psat0s2177g0040' => 'psa', 'Psat3g174760' => 'psa', 'Psat3g192160' => 'psa', 'Psat4g058520' => 'psa', 'Psat4g096840' => 'psa', 'Psat7g037320' => 'psa', 'PSO017G1274' => 'pso', 'PSO017G5166' => 'pso', 'PSO063G4558' => 'pso', 'PSO170G4458' => 'pso', 'PSO170G5005' => 'pso', 'PSO210G6156' => 'pso', 'PSO210G6635' => 'pso', 'PSO210G7397' => 'pso', 'PSO210G7700' => 'pso', 'PSO455G0035' => 'pso', 'PSO455G0180' => 'pso', 'PSO478G4515' => 'pso', 'PSO832G1305' => 'pso', 'PSO832G3489' => 'pso', 'QL02p075247' => 'qlo', 'QL03p051148' => 'qlo', 'QL05p010313' => 'qlo', 'QL06p034627' => 'qlo', 'QL10p001889' => 'qlo', 'QL10p010846' => 'qlo', 'RcHm_v2.0_Chr1g0350621' => 'rch', 'RcHm_v2.0_Chr1g0350641' => 'rch', 'RcHm_v2.0_Chr2g0092891' => 'rch', 'RcHm_v2.0_Chr2g0100251' => 'rch', 'RcHm_v2.0_Chr2g0158661' => 'rch', 'RcHm_v2.0_Chr2g0172741' => 'rch', 'RcHm_v2.0_Chr4g0429571' => 'rch', 'RcHm_v2.0_Chr5g0042471' => 'rch', 'RcHm_v2.0_Chr7g0189451' => 'rch', 'Rhsim08G0052000' => 'rsi', 'Rhsim08G0174400' => 'rsi', 'Rhsim08G0193200' => 'rsi', 'Rhsim10G0214800' => 'rsi', 'Rhsim10G0214900' => 'rsi', 'Rhsim10G0215000' => 'rsi', 'Rhsim12G0022900' => 'rsi', 'Rhsim12G0177500' => 'rsi', 'Rhsim12G0177700' => 'rsi', 'Sabra03G0122600' => 'sbr', 'Sabra05G0097400' => 'sbr', 'Sabra12G0064100' => 'sbr', 'Sabra15G0121300' => 'sbr', 'SalBow2G0642' => 'sbo', 'SalBow5G2667' => 'sbo', 'SalBow5G4873' => 'sbo', 'SalBow8G2395' => 'sbo', 'Sc03g0003290' => 'sci', 'Sc10g0010130' => 'sci', 'Sc22g0003650' => 'sci', 'Sed0001603' => 'sed', 'Sed0004259' => 'sed', 'Sed0006789' => 'sed', 'Sed0011838' => 'sed', 'Sed0012964' => 'sed', 'Sed0016383' => 'sed', 'Sed0019010' => 'sed', 'Sed0020188' => 'sed', 'SEGI_04702' => 'sgi', 'SEGI_17231' => 'sgi', 'SEGI_18877' => 'sgi', 'SEGI_25196' => 'sgi', 'SEGI_25515' => 'sgi', 'SEGI_28445' => 'sgi', 'SEGI_37452' => 'sgi', 'SGA_v2.0_scaffold188G40336' => 'sas', 'SGA_v2.0_scaffold228G43247' => 'sas', 'SGA_v2.0_scaffold280G46853' => 'sas', 'SGA_v2.0_scaffold34G13808' => 'sas', 'SGA_v2.0_scaffold40G15576' => 'sas', 'SGA_v2.0_scaffold611G53188' => 'sas', 'SGA_v2.0_scaffold78G25461' => 'sas', 'SGA_v2.0_scaffold90G27888' => 'sas', 'SHI08601' => 'shi', 'SHI08606' => 'shi', 'SHI17117' => 'shi', 'SHI17119' => 'shi', 'SMO118G0201' => 'smo', 'SMO169G0247' => 'smo', 'SMO176G0006' => 'smo', 'SMO176G0015' => 'smo', 'SMO202G0006' => 'smo', 'SMO240G0050' => 'smo', 'SMO286G0009' => 'smo', 'SMO338G0033' => 'smo', 'SMO356G0533' => 'smo', 'SMO364G0382' => 'smo', 'SMO367G0166' => 'smo', 'SMO367G1098' => 'smo', 'Solyc01g009920.3' => 'sly', 'Solyc01g099300.3' => 'sly', 'Solyc02g084700.3' => 'sly', 'Solyc03g097520.3' => 'sly', 'Solyc06g071580.3' => 'sly', 'Solyc10g081760.3' => 'sly', 'Sopen01g005480' => 'spe', 'Sopen01g042850' => 'spe', 'Sopen02g029370' => 'spe', 'Sopen03g028280' => 'spe', 'Sopen06g027870' => 'spe', 'Sopen10g032270' => 'spe', 'Sp5g18180' => 'spa', 'Sp6g12880' => 'spa', 'Sp6g30850' => 'spa', 'Sp7g22960' => 'spa', 'Sp7g34010' => 'spa', 'SpUn1326_0010' => 'spa', 'TAR371G0242' => 'tar', 'TAR622G0638' => 'tar', 'TAR628G1548' => 'tar', 'TAR629G1079' => 'tar', 'TAR629G3413' => 'tar', 'THA.LOC104804249' => 'tha', 'THA.LOC104808315' => 'tha', 'THA.LOC104809238' => 'tha', 'THA.LOC104825484' => 'tha', 'Thecc.01G025500' => 'tca', 'Thecc.03G015800' => 'tca', 'Thecc.03G018000' => 'tca', 'Thecc.03G134800' => 'tca', 'Thecc.04G014700' => 'tca', 'Thhalv10006991m.g' => 'esa', 'Thhalv10012707m.g' => 'esa', 'Thhalv10015739m.g' => 'esa', 'Thhalv10024553m.g' => 'esa', 'Thhalv10024673m.g' => 'esa', 'Thhalv10029187m.g' => 'esa', 'TPR.G12971' => 'tpr', 'TPR.G29396' => 'tpr', 'TPR.G33376' => 'tpr', 'TPR.G35508' => 'tpr', 'TPR.G35516' => 'tpr', 'TPR.G37317' => 'tpr', 'TPR.G37389' => 'tpr', 'TPR.G37523' => 'tpr', 'TPR.G559' => 'tpr', 'TWI14G0070' => 'twi', 'TWI14G0729' => 'twi', 'TWI18G0596' => 'twi', 'TWI39G0780' => 'twi', 'TWI39G0850' => 'twi', 'TWI73G1052' => 'twi', 'unitig_52.g17485' => 'ugi', 'unitig_61.g26355' => 'ugi', 'vmacro01040' => 'vma', 'vmacro16731' => 'vma', 'vmacro18270' => 'vma', 'vmacro19142' => 'vma', 'vmacro19407' => 'vma', 'vmacro19408' => 'vma', 'vmacro21899' => 'vma', 'vmacro21900' => 'vma', 'vmacro21901' => 'vma', 'VMungo0251G0490' => 'vmu', 'VMungo0251G1748' => 'vmu', 'VMungo1309G0421' => 'vmu', 'Zm00001eb086500' => 'zma', 'Zm00001eb150680' => 'zma', 'Zm00001eb162330' => 'zma', 'Zm00001eb203130' => 'zma', 'Zm00001eb369480' => 'zma', 'Zm00001eb382340' => 'zma', 'Zm00001eb416360' => 'zma' ), 'gf_id' => 'HOM05D000902', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000902' ), 'data_identifier' => 'HOM05D000902', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000902', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '663', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02470' => 'bna', 'A01p16260' => 'bna', 'A02p01680' => 'bna', 'A03p16600' => 'bna', 'A03p55660' => 'bna', 'A03p64160' => 'bna', 'A03p64170' => 'bna', 'A08p31900' => 'bna', 'A09p59530' => 'bna', 'A10p08230' => 'bna', 'A10p25090' => 'bna', 'Aa31LG3G7100' => 'aar', 'Aa31LG3G7110' => 'aar', 'Aa31LG6G13160' => 'aar', 'Aa31LG7G10770' => 'aar', 'Aa31LG7G3830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2723' => 'aag', 'Actinidia08045' => 'ach', 'Actinidia08888' => 'ach', 'Actinidia18333' => 'ach', 'Actinidia19334' => 'ach', 'Actinidia25552' => 'ach', 'Actinidia26089' => 'ach', 'Actinidia30615' => 'ach', 'Actinidia30616' => 'ach', 'Actinidia33083' => 'ach', 'Actinidia35762' => 'ach', 'Ah.02g110620' => 'amhyb', 'Ah.11g046390' => 'amhyb', 'AL1G31670' => 'aly', 'AL6G23730' => 'aly', 'AL7G14740' => 'aly', 'AL7G14750' => 'aly', 'AL7G14760' => 'aly', 'AL7G28220' => 'aly', 'AL8G24940' => 'aly', 'Aqoxy3G01665' => 'aox', 'Aqoxy3G02853' => 'aox', 'Aqoxy5G01513' => 'aox', 'Aqoxy5G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8SKA4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ75LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKDA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0LJZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7REX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZP4YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWX7I5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2QKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS0L9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPCD8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q161UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC7XCF' => 'arhy', 'AT1G19100' => 'ath', 'AT4G24970' => 'ath', 'AT4G36270' => 'ath', 'AT4G36280' => 'ath', 'AT4G36290' => 'ath', 'AT5G13130' => 'ath', 'AT5G50780' => 'ath', 'ATR0582G266' => 'atr', 'ATR0661G195' => 'atr', 'ATR1152G031' => 'atr', 'Atru.chr11.2382' => 'acertr', 'Atru.chr12.2337' => 'acertr', 'Atru.chr3.744' => 'acertr', 'Atru.chr6.1870' => 'acertr', 'Atru.chr9.2515' => 'acertr', 'AUR62004120' => 'cqu', 'AUR62005667' => 'cqu', 'AUR62007634' => 'cqu', 'AUR62008186' => 'cqu', 'AUR62008187' => 'cqu', 'AUR62008188' => 'cqu', 'AUR62027954' => 'cqu', 'AUR62028766' => 'cqu', 'AUR62028767' => 'cqu', 'AUR62028768' => 'cqu', 'AUR62028886' => 'cqu', 'AUR62029563' => 'cqu', 'AUR62038832' => 'cqu', 'BcaB01g04149' => 'bca', 'BcaB03g12940' => 'bca', 'BcaB03g13090' => 'bca', 'BcaB03g14466' => 'bca', 'BcaB05g24035' => 'bca', 'BcaC01g06050' => 'bca', 'BcaC04g19148' => 'bca', 'BcaC04g20761' => 'bca', 'BcaC06g32845' => 'bca', 'BcaC07g41274' => 'bca', 'BcaC09g50827' => 'bca', 'BcaNung00741' => 'bca', 'BcaNung00742' => 'bca', 'BcaNung01859' => 'bca', 'BcaNung03985' => 'bca', 'BcaNung03989' => 'bca', 'BcaNung05661' => 'bca', 'BolC1t00257H' => 'bol', 'BolC1t01956H' => 'bol', 'BolC2t06534H' => 'bol', 'BolC3t14334H' => 'bol', 'BolC5t30451H' => 'bol', 'BolC7t45880H' => 'bol', 'BolC7t46586H' => 'bol', 'BolC8t49301H' => 'bol', 'BolC8t51837H' => 'bol', 'BolC9t56822H' => 'bol', 'BolC9t59235H' => 'bol', 'BraA01t00234Z' => 'bra', 'BraA01t01563Z' => 'bra', 'BraA02t05147Z' => 'bra', 'BraA03t10947Z' => 'bra', 'BraA03t14633Z' => 'bra', 'BraA08t35112Z' => 'bra', 'BraA09t41330Z' => 'bra', 'BraA10t44570Z' => 'bra', 'C01p02670' => 'bna', 'C01p20260' => 'bna', 'C02p05890' => 'bna', 'C03p19530' => 'bna', 'C05p17470' => 'bna', 'C07p53900' => 'bna', 'C07p61630' => 'bna', 'C08p16800' => 'bna', 'C08p42810' => 'bna', 'C09p39480' => 'bna', 'C09p63980' => 'bna', 'CAN.G1001.7' => 'can', 'CAN.G1034.55' => 'can', 'CAN.G143.7' => 'can', 'CAN.G3340.1' => 'can', 'CAN.G358.19' => 'can', 'CAN.G373.2' => 'can', 'CAN.G674.16' => 'can', 'CAN.G674.17' => 'can', 'CAN.G674.18' => 'can', 'CAN.G732.2' => 'can', 'CAN.G732.3' => 'can', 'CAN.G993.39' => 'can', 'CANSAT01G2052' => 'cansat', 'CANSAT80G0070' => 'cansat', 'CANSAT80G0483' => 'cansat', 'CANSAT80G0625' => 'cansat', 'CARHR019690' => 'chi', 'CARHR080280' => 'chi', 'CARHR152750' => 'chi', 'CARHR152760' => 'chi', 'CARHR152770' => 'chi', 'CARHR200340' => 'chi', 'CARHR232370' => 'chi', 'CARHR244670' => 'chi', 'CARHR244680' => 'chi', 'CARHR257520' => 'chi', 'Carub.0001s1872' => 'cru', 'Carub.0006s1130' => 'cru', 'Carub.0007s0396' => 'cru', 'Carub.0007s0397' => 'cru', 'Carub.0007s1608' => 'cru', 'Carub.0008s1068' => 'cru', 'Carub.0008s1077' => 'cru', 'Ca_16158_v3' => 'car', 'Ca_17571_v3' => 'car', 'Ca_21936_v3' => 'car', 'Ca_22350_v3' => 'car', 'CBR_g22445' => 'cbr', 'CBR_g26290' => 'cbr', 'Cc04_g09610' => 'ccan', 'Cc04_g12280' => 'ccan', 'Cc07_g10230' => 'ccan', 'CDE02G0093' => 'cde', 'CDE02G0701' => 'cde', 'CDE04G1050' => 'cde', 'CDE05G1833' => 'cde', 'CDE05G3058' => 'cde', 'CDE05G3380' => 'cde', 'CDE06G0536' => 'cde', 'Cfa006923' => 'cfa', 'Cfa009402' => 'cfa', 'Cfa018751' => 'cfa', 'Cfa019164' => 'cfa', 'Cfa022935' => 'cfa', 'Ciclev10019081m.g' => 'ccl', 'Ciclev10025076m.g' => 'ccl', 'Ciclev10030712m.g' => 'ccl', 'Ciclev10033760m.g' => 'ccl', 'CiPaw.05G105600' => 'cil', 'CiPaw.08G136700' => 'cil', 'CiPaw.11G003900' => 'cil', 'CiPaw.11G023700' => 'cil', 'CiPaw.12G003700' => 'cil', 'ClCG06G017100' => 'cla', 'ClCG06G018110' => 'cla', 'ClCG07G008800' => 'cla', 'ClCG07G015330' => 'cla', 'COL.COLO4_13698' => 'col', 'COL.COLO4_16659' => 'col', 'COL.COLO4_21986' => 'col', 'COL.COLO4_24049' => 'col', 'COL.COLO4_29061' => 'col', 'COL.COLO4_29075' => 'col', 'COL.COLO4_30094' => 'col', 'Cpa.g.c33689' => 'cpa', 'Cpa.g.sc108.39' => 'cpa', 'Cpa.g.sc108.41' => 'cpa', 'Cpa.g.sc1163.1' => 'cpa', 'Cpa.g.sc4.155' => 'cpa', 'Cpa.g.sc6.194' => 'cpa', 'CsaV3_1G000340' => 'csa', 'CsaV3_1G001400' => 'csa', 'CsaV3_4G002220' => 'csa', 'CsaV3_4G005370' => 'csa', 'CSS0007487' => 'camsi', 'CSS0008066' => 'camsi', 'CSS0009120' => 'camsi', 'CSS0015512' => 'camsi', 'CSS0022409' => 'camsi', 'CSS0025358' => 'camsi', 'CSS0044547' => 'camsi', 'DCAR_013057' => 'dca', 'DCAR_015058' => 'dca', 'DCAR_016027' => 'dca', 'DCAR_017327' => 'dca', 'DCAR_020743' => 'dca', 'DCAR_026157' => 'dca', 'DCAR_032339' => 'dca', 'DCAR_032340' => 'dca', 'Dinv11200' => 'din', 'Dinv11201' => 'din', 'Dinv20631' => 'din', 'Dinv23182' => 'din', 'Dinv33466' => 'din', 'Dinv33583' => 'din', 'Dinv38565' => 'din', 'Duzib068G0200' => 'dzi', 'Duzib147G0132' => 'dzi', 'Duzib147G0635' => 'dzi', 'Duzib205G1670' => 'dzi', 'Duzib251G0606' => 'dzi', 'ECA232G3336' => 'eca', 'ECA232G3763' => 'eca', 'ECA232G4845' => 'eca', 'ECA234G1607' => 'eca', 'ECA246G0932' => 'eca', 'ECA247G0781' => 'eca', 'ECA247G1932' => 'eca', 'ECA247G2079' => 'eca', 'ECA247G3338' => 'eca', 'ECA247G4115' => 'eca', 'EL10Ac3g06552' => 'bvu', 'EL10Ac5g10721' => 'bvu', 'EL10Ac5g10722' => 'bvu', 'EL10Ac5g10723' => 'bvu', 'EL10Ac5g11361' => 'bvu', 'EL10Ac6g13553' => 'bvu', 'EL10As8g23872' => 'bvu', 'Eucgr.B00250' => 'egr', 'Eucgr.B00251' => 'egr', 'Eucgr.B03533' => 'egr', 'Eucgr.I02381' => 'egr', 'Eucgr.K02700' => 'egr', 'FAN02G0174' => 'fan', 'FAN02G3146' => 'fan', 'FAN04G1672' => 'fan', 'FAN04G2273' => 'fan', 'FAN05G2791' => 'fan', 'FAN05G4035' => 'fan', 'FAN07G0834' => 'fan', 'FAN08G1198' => 'fan', 'FAN09G4182' => 'fan', 'FAN12G0496' => 'fan', 'FAN13G1027' => 'fan', 'FAN13G2951' => 'fan', 'FAN14G0705' => 'fan', 'FAN14G0720' => 'fan', 'FAN17G0201' => 'fan', 'FAN17G2665' => 'fan', 'FAN18G1456' => 'fan', 'FAN18G1525' => 'fan', 'FAN18G3500' => 'fan', 'FAN28G2670' => 'fan', 'FvH4_1g12391' => 'fve', 'FvH4_4g23220' => 'fve', 'FvH4_5g08810' => 'fve', 'FvH4_5g28960' => 'fve', 'FvH4_6g42820' => 'fve', 'FvH4_6g51110' => 'fve', 'Glyma.02G051802' => 'gma', 'Glyma.04G185300' => 'gma', 'Glyma.05G202900' => 'gma', 'Glyma.08G010300' => 'gma', 'Glyma.16G131900' => 'gma', 'Glyma.17G087900' => 'gma', 'Gohir.A07G048600' => 'ghi', 'Gohir.A11G179000' => 'ghi', 'Gohir.A12G140900' => 'ghi', 'Gohir.A12G140950' => 'ghi', 'Gohir.A12G191700' => 'ghi', 'Gohir.A13G086300' => 'ghi', 'Gohir.D07G052900' => 'ghi', 'Gohir.D11G186600' => 'ghi', 'Gohir.D12G145575' => 'ghi', 'Gohir.D12G145650' => 'ghi', 'Gohir.D12G145725' => 'ghi', 'Gohir.D12G194050' => 'ghi', 'Gohir.D13G091800' => 'ghi', 'Gorai.001G055900' => 'gra', 'Gorai.007G198400' => 'gra', 'Gorai.008G157000' => 'gra', 'Gorai.008G157100' => 'gra', 'Gorai.008G208700' => 'gra', 'Gorai.010G138700' => 'gra', 'GSVIVG01000977001' => 'vvi', 'GSVIVG01007708001' => 'vvi', 'GSVIVG01008587001' => 'vvi', 'GSVIVG01018849001' => 'vvi', 'GSVIVG01032432001' => 'vvi', 'HanXRQChr02g0034131' => 'han', 'HanXRQChr02g0035981' => 'han', 'HanXRQChr02g0035991' => 'han', 'HanXRQChr05g0155611' => 'han', 'HanXRQChr05g0155621' => 'han', 'HanXRQChr08g0236501' => 'han', 'HanXRQChr09g0261321' => 'han', 'HanXRQChr09g0272081' => 'han', 'HanXRQChr10g0310741' => 'han', 'HanXRQChr11g0325591' => 'han', 'HanXRQChr12g0385691' => 'han', 'HanXRQChr13g0387801' => 'han', 'HanXRQChr15g0463011' => 'han', 'Haze_03826' => 'cav', 'Haze_03827' => 'cav', 'Haze_07183' => 'cav', 'Haze_07537' => 'cav', 'Haze_07539' => 'cav', 'Haze_12461' => 'cav', 'Haze_16115' => 'cav', 'Haze_16808' => 'cav', 'Haze_18531' => 'cav', 'Hma1.2p1_0046F.1_g026700' => 'hma', 'Hma1.2p1_0046F.1_g026710' => 'hma', 'Hma1.2p1_0168F.1_g074340' => 'hma', 'Hma1.2p1_0266F.1_g107030' => 'hma', 'Hma1.2p1_0266F.1_g107060' => 'hma', 'Hma1.2p1_0275F.1_g110510' => 'hma', 'Hma1.2p1_0592F.1_g185490' => 'hma', 'Hma1.2p1_0592F.1_g185500' => 'hma', 'Hma1.2p1_0592F.1_g185510' => 'hma', 'Hma1.2p1_0592F.1_g185520' => 'hma', 'Hma1.2p1_0592F.1_g185530' => 'hma', 'Hma1.2p1_0818F.1_g223450' => 'hma', 'HPP92_009708' => 'vpl', 'HPP92_009793' => 'vpl', 'HPP92_009796' => 'vpl', 'HPP92_009797' => 'vpl', 'HPP92_014940' => 'vpl', 'HPP92_014988' => 'vpl', 'Hund02463' => 'sun', 'Hund02760' => 'sun', 'Hund05071' => 'sun', 'Hund10108' => 'sun', 'Hund11204' => 'sun', 'Hund14016' => 'sun', 'Hund16464' => 'sun', 'Lalb_Chr09g0333391' => 'lal', 'Lalb_Chr11g0070461' => 'lal', 'Lalb_Chr12g0201671' => 'lal', 'Lalb_Chr13g0297161' => 'lal', 'Lj1g0002823' => 'lja', 'Lj3C1074T6' => 'lonja', 'Lj4A212T28' => 'lonja', 'Lj4g0005516' => 'lja', 'Lj4g0013705' => 'lja', 'Lj4g0027865' => 'lja', 'Lj5C92G16' => 'lonja', 'Lj5C92T12' => 'lonja', 'Lj7C596T3' => 'lonja', 'Lj9A446G59' => 'lonja', 'Lj9A482G21' => 'lonja', 'Lsat_1_v5_gn_1_28261' => 'lsa', 'Lsat_1_v5_gn_1_28281' => 'lsa', 'Lsat_1_v5_gn_1_32721' => 'lsa', 'Lsat_1_v5_gn_4_151760' => 'lsa', 'Lsat_1_v5_gn_4_2120' => 'lsa', 'Lsat_1_v5_gn_4_75761' => 'lsa', 'Lsat_1_v5_gn_5_10920' => 'lsa', 'Manes.02G099900' => 'mes', 'Manes.11G096200' => 'mes', 'Manes.12G007200' => 'mes', 'Manes.14G048300' => 'mes', 'Manes.17G114700' => 'mes', 'Mapoly0002s0070' => 'mpo', 'Mapoly0029s0099' => 'mpo', 'MBI07_g24742_MAGBIO' => 'mbi', 'MBI10_g27988_MAGBIO' => 'mbi', 'MBI11_g13057_MAGBIO' => 'mbi', 'MD02G1137200' => 'mdo', 'MD06G1137200' => 'mdo', 'MD07G1122300' => 'mdo', 'MD09G1078200' => 'mdo', 'MD13G1123700' => 'mdo', 'MD14G1151900' => 'mdo', 'MD17G1030900' => 'mdo', 'MD17G1068200' => 'mdo', 'MD17G1068600' => 'mdo', 'Medtr3g077540' => 'mtr', 'Medtr4g105530' => 'mtr', 'Medtr8g076580' => 'mtr', 'Medtr8g076590' => 'mtr', 'Medtr8g096410' => 'mtr', 'MELO3C016411.2' => 'cme', 'MELO3C017780.2' => 'cme', 'MELO3C022560.2' => 'cme', 'MELO3C026187.2' => 'cme', 'MELO3C026286.2' => 'cme', 'MELO3C032854.2' => 'cme', 'Migut.H02495' => 'egut', 'Migut.I00561' => 'egut', 'Migut.K01015' => 'egut', 'Migut.K01016' => 'egut', 'Migut.L00743' => 'egut', 'Migut.L00744' => 'egut', 'Migut.L00746' => 'egut', 'Migut.L00798' => 'egut', 'Migut.L00799' => 'egut', 'Migut.N02096' => 'egut', 'MSTRG.11259' => 'ama', 'MSTRG.23142' => 'ama', 'MSTRG.2499' => 'ama', 'Nitab4.5_0000003g0730' => 'nta', 'Nitab4.5_0000137g0020' => 'nta', 'Nitab4.5_0000721g0210' => 'nta', 'Nitab4.5_0000723g0050' => 'nta', 'Nitab4.5_0000913g0070' => 'nta', 'Nitab4.5_0001332g0040' => 'nta', 'Nitab4.5_0001771g0050' => 'nta', 'Nitab4.5_0001918g0050' => 'nta', 'Nitab4.5_0002686g0030' => 'nta', 'Nitab4.5_0003156g0020' => 'nta', 'Nitab4.5_0003383g0040' => 'nta', 'Nitab4.5_0003918g0010' => 'nta', 'Nitab4.5_0006760g0010' => 'nta', 'Nn1g05981' => 'nnu', 'Nn1g06288' => 'nnu', 'Nn3g16371' => 'nnu', 'Nn3g16786' => 'nnu', 'Nn4g22232' => 'nnu', 'Oeu005144.1' => 'oeu', 'Oeu005145.1' => 'oeu', 'Oeu011348.1' => 'oeu', 'Oeu016415.1' => 'oeu', 'Oeu023501.1' => 'oeu', 'Oeu044473.1' => 'oeu', 'Oeu048892.2' => 'oeu', 'Os01g0549200' => 'osa', 'Os02g0469300' => 'osa', 'Os04g0311100' => 'osa', 'Os06g0474900' => 'osa', 'Os10g0181700' => 'osa', 'Os11g0454800' => 'osa', 'Peaxi162Scf00037g00714' => 'pax', 'Peaxi162Scf00084g01217' => 'pax', 'Peaxi162Scf00257g00217' => 'pax', 'Peaxi162Scf00516g00215' => 'pax', 'Peaxi162Scf00689g00123' => 'pax', 'PGR044G2719' => 'pgr', 'PGR083G1360' => 'pgr', 'PGR102G2849' => 'pgr', 'PGR119G2534' => 'pgr', 'PGSC0003DMG400003538' => 'stu', 'PGSC0003DMG400028138' => 'stu', 'PGSC0003DMG400031732' => 'stu', 'PGSC0003DMG400038165' => 'stu', 'Phvul.002G284600' => 'pvu', 'Phvul.003G258200' => 'pvu', 'Phvul.009G176500' => 'pvu', 'Potri.003G167201' => 'ptr', 'Potri.005G118400' => 'ptr', 'Potri.012G089000' => 'ptr', 'Potri.012G102800' => 'ptr', 'Potri.015G079400' => 'ptr', 'Potri.015G100900' => 'ptr', 'Pp3c14_9810' => 'ppa', 'Pp3c15_10450' => 'ppa', 'Pp3c20_19150' => 'ppa', 'Pp3c23_12740' => 'ppa', 'Pp3c23_6310' => 'ppa', 'Pp3c24_3720' => 'ppa', 'Pp3c27_2580' => 'ppa', 'Pp3c9_8990' => 'ppa', 'PRCOL_00002854' => 'pco', 'Prupe.1G221200' => 'ppe', 'Prupe.3G289000' => 'ppe', 'Prupe.5G147000' => 'ppe', 'Prupe.6G157300' => 'ppe', 'Prupe.7G163400' => 'ppe', 'Psat0s2177g0040' => 'psa', 'Psat3g174760' => 'psa', 'Psat3g192160' => 'psa', 'Psat4g058520' => 'psa', 'Psat4g096840' => 'psa', 'Psat7g037320' => 'psa', 'PSO017G1274' => 'pso', 'PSO017G5166' => 'pso', 'PSO063G4558' => 'pso', 'PSO170G4458' => 'pso', 'PSO170G5005' => 'pso', 'PSO210G6156' => 'pso', 'PSO210G6635' => 'pso', 'PSO210G7397' => 'pso', 'PSO210G7700' => 'pso', 'PSO455G0035' => 'pso', 'PSO455G0180' => 'pso', 'PSO478G4515' => 'pso', 'PSO832G1305' => 'pso', 'PSO832G3489' => 'pso', 'QL02p075247' => 'qlo', 'QL03p051148' => 'qlo', 'QL05p010313' => 'qlo', 'QL06p034627' => 'qlo', 'QL10p001889' => 'qlo', 'QL10p010846' => 'qlo', 'RcHm_v2.0_Chr1g0350621' => 'rch', 'RcHm_v2.0_Chr1g0350641' => 'rch', 'RcHm_v2.0_Chr2g0092891' => 'rch', 'RcHm_v2.0_Chr2g0100251' => 'rch', 'RcHm_v2.0_Chr2g0158661' => 'rch', 'RcHm_v2.0_Chr2g0172741' => 'rch', 'RcHm_v2.0_Chr4g0429571' => 'rch', 'RcHm_v2.0_Chr5g0042471' => 'rch', 'RcHm_v2.0_Chr7g0189451' => 'rch', 'Rhsim08G0052000' => 'rsi', 'Rhsim08G0174400' => 'rsi', 'Rhsim08G0193200' => 'rsi', 'Rhsim10G0214800' => 'rsi', 'Rhsim10G0214900' => 'rsi', 'Rhsim10G0215000' => 'rsi', 'Rhsim12G0022900' => 'rsi', 'Rhsim12G0177500' => 'rsi', 'Rhsim12G0177700' => 'rsi', 'Sabra03G0122600' => 'sbr', 'Sabra05G0097400' => 'sbr', 'Sabra12G0064100' => 'sbr', 'Sabra15G0121300' => 'sbr', 'SalBow2G0642' => 'sbo', 'SalBow5G2667' => 'sbo', 'SalBow5G4873' => 'sbo', 'SalBow8G2395' => 'sbo', 'Sc03g0003290' => 'sci', 'Sc10g0010130' => 'sci', 'Sc22g0003650' => 'sci', 'Sed0001603' => 'sed', 'Sed0004259' => 'sed', 'Sed0006789' => 'sed', 'Sed0011838' => 'sed', 'Sed0012964' => 'sed', 'Sed0016383' => 'sed', 'Sed0019010' => 'sed', 'Sed0020188' => 'sed', 'SEGI_04702' => 'sgi', 'SEGI_17231' => 'sgi', 'SEGI_18877' => 'sgi', 'SEGI_25196' => 'sgi', 'SEGI_25515' => 'sgi', 'SEGI_28445' => 'sgi', 'SEGI_37452' => 'sgi', 'SGA_v2.0_scaffold188G40336' => 'sas', 'SGA_v2.0_scaffold228G43247' => 'sas', 'SGA_v2.0_scaffold280G46853' => 'sas', 'SGA_v2.0_scaffold34G13808' => 'sas', 'SGA_v2.0_scaffold40G15576' => 'sas', 'SGA_v2.0_scaffold611G53188' => 'sas', 'SGA_v2.0_scaffold78G25461' => 'sas', 'SGA_v2.0_scaffold90G27888' => 'sas', 'SHI08601' => 'shi', 'SHI08606' => 'shi', 'SHI17117' => 'shi', 'SHI17119' => 'shi', 'SMO118G0201' => 'smo', 'SMO169G0247' => 'smo', 'SMO176G0006' => 'smo', 'SMO176G0015' => 'smo', 'SMO202G0006' => 'smo', 'SMO240G0050' => 'smo', 'SMO286G0009' => 'smo', 'SMO338G0033' => 'smo', 'SMO356G0533' => 'smo', 'SMO364G0382' => 'smo', 'SMO367G0166' => 'smo', 'SMO367G1098' => 'smo', 'Solyc01g009920.3' => 'sly', 'Solyc01g099300.3' => 'sly', 'Solyc02g084700.3' => 'sly', 'Solyc03g097520.3' => 'sly', 'Solyc06g071580.3' => 'sly', 'Solyc10g081760.3' => 'sly', 'Sopen01g005480' => 'spe', 'Sopen01g042850' => 'spe', 'Sopen02g029370' => 'spe', 'Sopen03g028280' => 'spe', 'Sopen06g027870' => 'spe', 'Sopen10g032270' => 'spe', 'Sp5g18180' => 'spa', 'Sp6g12880' => 'spa', 'Sp6g30850' => 'spa', 'Sp7g22960' => 'spa', 'Sp7g34010' => 'spa', 'SpUn1326_0010' => 'spa', 'TAR371G0242' => 'tar', 'TAR622G0638' => 'tar', 'TAR628G1548' => 'tar', 'TAR629G1079' => 'tar', 'TAR629G3413' => 'tar', 'THA.LOC104804249' => 'tha', 'THA.LOC104808315' => 'tha', 'THA.LOC104809238' => 'tha', 'THA.LOC104825484' => 'tha', 'Thecc.01G025500' => 'tca', 'Thecc.03G015800' => 'tca', 'Thecc.03G018000' => 'tca', 'Thecc.03G134800' => 'tca', 'Thecc.04G014700' => 'tca', 'Thhalv10006991m.g' => 'esa', 'Thhalv10012707m.g' => 'esa', 'Thhalv10015739m.g' => 'esa', 'Thhalv10024553m.g' => 'esa', 'Thhalv10024673m.g' => 'esa', 'Thhalv10029187m.g' => 'esa', 'TPR.G12971' => 'tpr', 'TPR.G29396' => 'tpr', 'TPR.G33376' => 'tpr', 'TPR.G35508' => 'tpr', 'TPR.G35516' => 'tpr', 'TPR.G37317' => 'tpr', 'TPR.G37389' => 'tpr', 'TPR.G37523' => 'tpr', 'TPR.G559' => 'tpr', 'TWI14G0070' => 'twi', 'TWI14G0729' => 'twi', 'TWI18G0596' => 'twi', 'TWI39G0780' => 'twi', 'TWI39G0850' => 'twi', 'TWI73G1052' => 'twi', 'unitig_52.g17485' => 'ugi', 'unitig_61.g26355' => 'ugi', 'vmacro01040' => 'vma', 'vmacro16731' => 'vma', 'vmacro18270' => 'vma', 'vmacro19142' => 'vma', 'vmacro19407' => 'vma', 'vmacro19408' => 'vma', 'vmacro21899' => 'vma', 'vmacro21900' => 'vma', 'vmacro21901' => 'vma', 'VMungo0251G0490' => 'vmu', 'VMungo0251G1748' => 'vmu', 'VMungo1309G0421' => 'vmu', 'Zm00001eb086500' => 'zma', 'Zm00001eb150680' => 'zma', 'Zm00001eb162330' => 'zma', 'Zm00001eb203130' => 'zma', 'Zm00001eb369480' => 'zma', 'Zm00001eb382340' => 'zma', 'Zm00001eb416360' => 'zma' ) $gf_id = 'HOM05D000902' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000902' ) $data_identifier = 'HOM05D000902' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 13, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 10, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 6, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 9, 'hma' => (int) 12, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 4, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 6, 'ppa' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 6, 'rch' => (int) 9, 'rsi' => (int) 9, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 12, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 3, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416360' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000902', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '663', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02470' => 'bna', 'A01p16260' => 'bna', 'A02p01680' => 'bna', 'A03p16600' => 'bna', 'A03p55660' => 'bna', 'A03p64160' => 'bna', 'A03p64170' => 'bna', 'A08p31900' => 'bna', 'A09p59530' => 'bna', 'A10p08230' => 'bna', 'A10p25090' => 'bna', 'Aa31LG3G7100' => 'aar', 'Aa31LG3G7110' => 'aar', 'Aa31LG6G13160' => 'aar', 'Aa31LG7G10770' => 'aar', 'Aa31LG7G3830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2723' => 'aag', 'Actinidia08045' => 'ach', 'Actinidia08888' => 'ach', 'Actinidia18333' => 'ach', 'Actinidia19334' => 'ach', 'Actinidia25552' => 'ach', 'Actinidia26089' => 'ach', 'Actinidia30615' => 'ach', 'Actinidia30616' => 'ach', 'Actinidia33083' => 'ach', 'Actinidia35762' => 'ach', 'Ah.02g110620' => 'amhyb', 'Ah.11g046390' => 'amhyb', 'AL1G31670' => 'aly', 'AL6G23730' => 'aly', 'AL7G14740' => 'aly', 'AL7G14750' => 'aly', 'AL7G14760' => 'aly', 'AL7G28220' => 'aly', 'AL8G24940' => 'aly', 'Aqoxy3G01665' => 'aox', 'Aqoxy3G02853' => 'aox', 'Aqoxy5G01513' => 'aox', 'Aqoxy5G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8SKA4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ75LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKDA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0LJZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7REX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZP4YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWX7I5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2QKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS0L9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPCD8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q161UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC7XCF' => 'arhy', 'AT1G19100' => 'ath', 'AT4G24970' => 'ath', 'AT4G36270' => 'ath', 'AT4G36280' => 'ath', 'AT4G36290' => 'ath', 'AT5G13130' => 'ath', 'AT5G50780' => 'ath', 'ATR0582G266' => 'atr', 'ATR0661G195' => 'atr', 'ATR1152G031' => 'atr', 'Atru.chr11.2382' => 'acertr', 'Atru.chr12.2337' => 'acertr', 'Atru.chr3.744' => 'acertr', 'Atru.chr6.1870' => 'acertr', 'Atru.chr9.2515' => 'acertr', 'AUR62004120' => 'cqu', 'AUR62005667' => 'cqu', 'AUR62007634' => 'cqu', 'AUR62008186' => 'cqu', 'AUR62008187' => 'cqu', 'AUR62008188' => 'cqu', 'AUR62027954' => 'cqu', 'AUR62028766' => 'cqu', 'AUR62028767' => 'cqu', 'AUR62028768' => 'cqu', 'AUR62028886' => 'cqu', 'AUR62029563' => 'cqu', 'AUR62038832' => 'cqu', 'BcaB01g04149' => 'bca', 'BcaB03g12940' => 'bca', 'BcaB03g13090' => 'bca', 'BcaB03g14466' => 'bca', 'BcaB05g24035' => 'bca', 'BcaC01g06050' => 'bca', 'BcaC04g19148' => 'bca', 'BcaC04g20761' => 'bca', 'BcaC06g32845' => 'bca', 'BcaC07g41274' => 'bca', 'BcaC09g50827' => 'bca', 'BcaNung00741' => 'bca', 'BcaNung00742' => 'bca', 'BcaNung01859' => 'bca', 'BcaNung03985' => 'bca', 'BcaNung03989' => 'bca', 'BcaNung05661' => 'bca', 'BolC1t00257H' => 'bol', 'BolC1t01956H' => 'bol', 'BolC2t06534H' => 'bol', 'BolC3t14334H' => 'bol', 'BolC5t30451H' => 'bol', 'BolC7t45880H' => 'bol', 'BolC7t46586H' => 'bol', 'BolC8t49301H' => 'bol', 'BolC8t51837H' => 'bol', 'BolC9t56822H' => 'bol', 'BolC9t59235H' => 'bol', 'BraA01t00234Z' => 'bra', 'BraA01t01563Z' => 'bra', 'BraA02t05147Z' => 'bra', 'BraA03t10947Z' => 'bra', 'BraA03t14633Z' => 'bra', 'BraA08t35112Z' => 'bra', 'BraA09t41330Z' => 'bra', 'BraA10t44570Z' => 'bra', 'C01p02670' => 'bna', 'C01p20260' => 'bna', 'C02p05890' => 'bna', 'C03p19530' => 'bna', 'C05p17470' => 'bna', 'C07p53900' => 'bna', 'C07p61630' => 'bna', 'C08p16800' => 'bna', 'C08p42810' => 'bna', 'C09p39480' => 'bna', 'C09p63980' => 'bna', 'CAN.G1001.7' => 'can', 'CAN.G1034.55' => 'can', 'CAN.G143.7' => 'can', 'CAN.G3340.1' => 'can', 'CAN.G358.19' => 'can', 'CAN.G373.2' => 'can', 'CAN.G674.16' => 'can', 'CAN.G674.17' => 'can', 'CAN.G674.18' => 'can', 'CAN.G732.2' => 'can', 'CAN.G732.3' => 'can', 'CAN.G993.39' => 'can', 'CANSAT01G2052' => 'cansat', 'CANSAT80G0070' => 'cansat', 'CANSAT80G0483' => 'cansat', 'CANSAT80G0625' => 'cansat', 'CARHR019690' => 'chi', 'CARHR080280' => 'chi', 'CARHR152750' => 'chi', 'CARHR152760' => 'chi', 'CARHR152770' => 'chi', 'CARHR200340' => 'chi', 'CARHR232370' => 'chi', 'CARHR244670' => 'chi', 'CARHR244680' => 'chi', 'CARHR257520' => 'chi', 'Carub.0001s1872' => 'cru', 'Carub.0006s1130' => 'cru', 'Carub.0007s0396' => 'cru', 'Carub.0007s0397' => 'cru', 'Carub.0007s1608' => 'cru', 'Carub.0008s1068' => 'cru', 'Carub.0008s1077' => 'cru', 'Ca_16158_v3' => 'car', 'Ca_17571_v3' => 'car', 'Ca_21936_v3' => 'car', 'Ca_22350_v3' => 'car', 'CBR_g22445' => 'cbr', 'CBR_g26290' => 'cbr', 'Cc04_g09610' => 'ccan', 'Cc04_g12280' => 'ccan', 'Cc07_g10230' => 'ccan', 'CDE02G0093' => 'cde', 'CDE02G0701' => 'cde', 'CDE04G1050' => 'cde', 'CDE05G1833' => 'cde', 'CDE05G3058' => 'cde', 'CDE05G3380' => 'cde', 'CDE06G0536' => 'cde', 'Cfa006923' => 'cfa', 'Cfa009402' => 'cfa', 'Cfa018751' => 'cfa', 'Cfa019164' => 'cfa', 'Cfa022935' => 'cfa', 'Ciclev10019081m.g' => 'ccl', 'Ciclev10025076m.g' => 'ccl', 'Ciclev10030712m.g' => 'ccl', 'Ciclev10033760m.g' => 'ccl', 'CiPaw.05G105600' => 'cil', 'CiPaw.08G136700' => 'cil', 'CiPaw.11G003900' => 'cil', 'CiPaw.11G023700' => 'cil', 'CiPaw.12G003700' => 'cil', 'ClCG06G017100' => 'cla', 'ClCG06G018110' => 'cla', 'ClCG07G008800' => 'cla', 'ClCG07G015330' => 'cla', 'COL.COLO4_13698' => 'col', 'COL.COLO4_16659' => 'col', 'COL.COLO4_21986' => 'col', 'COL.COLO4_24049' => 'col', 'COL.COLO4_29061' => 'col', 'COL.COLO4_29075' => 'col', 'COL.COLO4_30094' => 'col', 'Cpa.g.c33689' => 'cpa', 'Cpa.g.sc108.39' => 'cpa', 'Cpa.g.sc108.41' => 'cpa', 'Cpa.g.sc1163.1' => 'cpa', 'Cpa.g.sc4.155' => 'cpa', 'Cpa.g.sc6.194' => 'cpa', 'CsaV3_1G000340' => 'csa', 'CsaV3_1G001400' => 'csa', 'CsaV3_4G002220' => 'csa', 'CsaV3_4G005370' => 'csa', 'CSS0007487' => 'camsi', 'CSS0008066' => 'camsi', 'CSS0009120' => 'camsi', 'CSS0015512' => 'camsi', 'CSS0022409' => 'camsi', 'CSS0025358' => 'camsi', 'CSS0044547' => 'camsi', 'DCAR_013057' => 'dca', 'DCAR_015058' => 'dca', 'DCAR_016027' => 'dca', 'DCAR_017327' => 'dca', 'DCAR_020743' => 'dca', 'DCAR_026157' => 'dca', 'DCAR_032339' => 'dca', 'DCAR_032340' => 'dca', 'Dinv11200' => 'din', 'Dinv11201' => 'din', 'Dinv20631' => 'din', 'Dinv23182' => 'din', 'Dinv33466' => 'din', 'Dinv33583' => 'din', 'Dinv38565' => 'din', 'Duzib068G0200' => 'dzi', 'Duzib147G0132' => 'dzi', 'Duzib147G0635' => 'dzi', 'Duzib205G1670' => 'dzi', 'Duzib251G0606' => 'dzi', 'ECA232G3336' => 'eca', 'ECA232G3763' => 'eca', 'ECA232G4845' => 'eca', 'ECA234G1607' => 'eca', 'ECA246G0932' => 'eca', 'ECA247G0781' => 'eca', 'ECA247G1932' => 'eca', 'ECA247G2079' => 'eca', 'ECA247G3338' => 'eca', 'ECA247G4115' => 'eca', 'EL10Ac3g06552' => 'bvu', 'EL10Ac5g10721' => 'bvu', 'EL10Ac5g10722' => 'bvu', 'EL10Ac5g10723' => 'bvu', 'EL10Ac5g11361' => 'bvu', 'EL10Ac6g13553' => 'bvu', 'EL10As8g23872' => 'bvu', 'Eucgr.B00250' => 'egr', 'Eucgr.B00251' => 'egr', 'Eucgr.B03533' => 'egr', 'Eucgr.I02381' => 'egr', 'Eucgr.K02700' => 'egr', 'FAN02G0174' => 'fan', 'FAN02G3146' => 'fan', 'FAN04G1672' => 'fan', 'FAN04G2273' => 'fan', 'FAN05G2791' => 'fan', 'FAN05G4035' => 'fan', 'FAN07G0834' => 'fan', 'FAN08G1198' => 'fan', 'FAN09G4182' => 'fan', 'FAN12G0496' => 'fan', 'FAN13G1027' => 'fan', 'FAN13G2951' => 'fan', 'FAN14G0705' => 'fan', 'FAN14G0720' => 'fan', 'FAN17G0201' => 'fan', 'FAN17G2665' => 'fan', 'FAN18G1456' => 'fan', 'FAN18G1525' => 'fan', 'FAN18G3500' => 'fan', 'FAN28G2670' => 'fan', 'FvH4_1g12391' => 'fve', 'FvH4_4g23220' => 'fve', 'FvH4_5g08810' => 'fve', 'FvH4_5g28960' => 'fve', 'FvH4_6g42820' => 'fve', 'FvH4_6g51110' => 'fve', 'Glyma.02G051802' => 'gma', 'Glyma.04G185300' => 'gma', 'Glyma.05G202900' => 'gma', 'Glyma.08G010300' => 'gma', 'Glyma.16G131900' => 'gma', 'Glyma.17G087900' => 'gma', 'Gohir.A07G048600' => 'ghi', 'Gohir.A11G179000' => 'ghi', 'Gohir.A12G140900' => 'ghi', 'Gohir.A12G140950' => 'ghi', 'Gohir.A12G191700' => 'ghi', 'Gohir.A13G086300' => 'ghi', 'Gohir.D07G052900' => 'ghi', 'Gohir.D11G186600' => 'ghi', 'Gohir.D12G145575' => 'ghi', 'Gohir.D12G145650' => 'ghi', 'Gohir.D12G145725' => 'ghi', 'Gohir.D12G194050' => 'ghi', 'Gohir.D13G091800' => 'ghi', 'Gorai.001G055900' => 'gra', 'Gorai.007G198400' => 'gra', 'Gorai.008G157000' => 'gra', 'Gorai.008G157100' => 'gra', 'Gorai.008G208700' => 'gra', 'Gorai.010G138700' => 'gra', 'GSVIVG01000977001' => 'vvi', 'GSVIVG01007708001' => 'vvi', 'GSVIVG01008587001' => 'vvi', 'GSVIVG01018849001' => 'vvi', 'GSVIVG01032432001' => 'vvi', 'HanXRQChr02g0034131' => 'han', 'HanXRQChr02g0035981' => 'han', 'HanXRQChr02g0035991' => 'han', 'HanXRQChr05g0155611' => 'han', 'HanXRQChr05g0155621' => 'han', 'HanXRQChr08g0236501' => 'han', 'HanXRQChr09g0261321' => 'han', 'HanXRQChr09g0272081' => 'han', 'HanXRQChr10g0310741' => 'han', 'HanXRQChr11g0325591' => 'han', 'HanXRQChr12g0385691' => 'han', 'HanXRQChr13g0387801' => 'han', 'HanXRQChr15g0463011' => 'han', 'Haze_03826' => 'cav', 'Haze_03827' => 'cav', 'Haze_07183' => 'cav', 'Haze_07537' => 'cav', 'Haze_07539' => 'cav', 'Haze_12461' => 'cav', 'Haze_16115' => 'cav', 'Haze_16808' => 'cav', 'Haze_18531' => 'cav', 'Hma1.2p1_0046F.1_g026700' => 'hma', 'Hma1.2p1_0046F.1_g026710' => 'hma', 'Hma1.2p1_0168F.1_g074340' => 'hma', 'Hma1.2p1_0266F.1_g107030' => 'hma', 'Hma1.2p1_0266F.1_g107060' => 'hma', 'Hma1.2p1_0275F.1_g110510' => 'hma', 'Hma1.2p1_0592F.1_g185490' => 'hma', 'Hma1.2p1_0592F.1_g185500' => 'hma', 'Hma1.2p1_0592F.1_g185510' => 'hma', 'Hma1.2p1_0592F.1_g185520' => 'hma', 'Hma1.2p1_0592F.1_g185530' => 'hma', 'Hma1.2p1_0818F.1_g223450' => 'hma', 'HPP92_009708' => 'vpl', 'HPP92_009793' => 'vpl', 'HPP92_009796' => 'vpl', 'HPP92_009797' => 'vpl', 'HPP92_014940' => 'vpl', 'HPP92_014988' => 'vpl', 'Hund02463' => 'sun', 'Hund02760' => 'sun', 'Hund05071' => 'sun', 'Hund10108' => 'sun', 'Hund11204' => 'sun', 'Hund14016' => 'sun', 'Hund16464' => 'sun', 'Lalb_Chr09g0333391' => 'lal', 'Lalb_Chr11g0070461' => 'lal', 'Lalb_Chr12g0201671' => 'lal', 'Lalb_Chr13g0297161' => 'lal', 'Lj1g0002823' => 'lja', 'Lj3C1074T6' => 'lonja', 'Lj4A212T28' => 'lonja', 'Lj4g0005516' => 'lja', 'Lj4g0013705' => 'lja', 'Lj4g0027865' => 'lja', 'Lj5C92G16' => 'lonja', 'Lj5C92T12' => 'lonja', 'Lj7C596T3' => 'lonja', 'Lj9A446G59' => 'lonja', 'Lj9A482G21' => 'lonja', 'Lsat_1_v5_gn_1_28261' => 'lsa', 'Lsat_1_v5_gn_1_28281' => 'lsa', 'Lsat_1_v5_gn_1_32721' => 'lsa', 'Lsat_1_v5_gn_4_151760' => 'lsa', 'Lsat_1_v5_gn_4_2120' => 'lsa', 'Lsat_1_v5_gn_4_75761' => 'lsa', 'Lsat_1_v5_gn_5_10920' => 'lsa', 'Manes.02G099900' => 'mes', 'Manes.11G096200' => 'mes', 'Manes.12G007200' => 'mes', 'Manes.14G048300' => 'mes', 'Manes.17G114700' => 'mes', 'Mapoly0002s0070' => 'mpo', 'Mapoly0029s0099' => 'mpo', 'MBI07_g24742_MAGBIO' => 'mbi', 'MBI10_g27988_MAGBIO' => 'mbi', 'MBI11_g13057_MAGBIO' => 'mbi', 'MD02G1137200' => 'mdo', 'MD06G1137200' => 'mdo', 'MD07G1122300' => 'mdo', 'MD09G1078200' => 'mdo', 'MD13G1123700' => 'mdo', 'MD14G1151900' => 'mdo', 'MD17G1030900' => 'mdo', 'MD17G1068200' => 'mdo', 'MD17G1068600' => 'mdo', 'Medtr3g077540' => 'mtr', 'Medtr4g105530' => 'mtr', 'Medtr8g076580' => 'mtr', 'Medtr8g076590' => 'mtr', 'Medtr8g096410' => 'mtr', 'MELO3C016411.2' => 'cme', 'MELO3C017780.2' => 'cme', 'MELO3C022560.2' => 'cme', 'MELO3C026187.2' => 'cme', 'MELO3C026286.2' => 'cme', 'MELO3C032854.2' => 'cme', 'Migut.H02495' => 'egut', 'Migut.I00561' => 'egut', 'Migut.K01015' => 'egut', 'Migut.K01016' => 'egut', 'Migut.L00743' => 'egut', 'Migut.L00744' => 'egut', 'Migut.L00746' => 'egut', 'Migut.L00798' => 'egut', 'Migut.L00799' => 'egut', 'Migut.N02096' => 'egut', 'MSTRG.11259' => 'ama', 'MSTRG.23142' => 'ama', 'MSTRG.2499' => 'ama', 'Nitab4.5_0000003g0730' => 'nta', 'Nitab4.5_0000137g0020' => 'nta', 'Nitab4.5_0000721g0210' => 'nta', 'Nitab4.5_0000723g0050' => 'nta', 'Nitab4.5_0000913g0070' => 'nta', 'Nitab4.5_0001332g0040' => 'nta', 'Nitab4.5_0001771g0050' => 'nta', 'Nitab4.5_0001918g0050' => 'nta', 'Nitab4.5_0002686g0030' => 'nta', 'Nitab4.5_0003156g0020' => 'nta', 'Nitab4.5_0003383g0040' => 'nta', 'Nitab4.5_0003918g0010' => 'nta', 'Nitab4.5_0006760g0010' => 'nta', 'Nn1g05981' => 'nnu', 'Nn1g06288' => 'nnu', 'Nn3g16371' => 'nnu', 'Nn3g16786' => 'nnu', 'Nn4g22232' => 'nnu', 'Oeu005144.1' => 'oeu', 'Oeu005145.1' => 'oeu', 'Oeu011348.1' => 'oeu', 'Oeu016415.1' => 'oeu', 'Oeu023501.1' => 'oeu', 'Oeu044473.1' => 'oeu', 'Oeu048892.2' => 'oeu', 'Os01g0549200' => 'osa', 'Os02g0469300' => 'osa', 'Os04g0311100' => 'osa', 'Os06g0474900' => 'osa', 'Os10g0181700' => 'osa', 'Os11g0454800' => 'osa', 'Peaxi162Scf00037g00714' => 'pax', 'Peaxi162Scf00084g01217' => 'pax', 'Peaxi162Scf00257g00217' => 'pax', 'Peaxi162Scf00516g00215' => 'pax', 'Peaxi162Scf00689g00123' => 'pax', 'PGR044G2719' => 'pgr', 'PGR083G1360' => 'pgr', 'PGR102G2849' => 'pgr', 'PGR119G2534' => 'pgr', 'PGSC0003DMG400003538' => 'stu', 'PGSC0003DMG400028138' => 'stu', 'PGSC0003DMG400031732' => 'stu', 'PGSC0003DMG400038165' => 'stu', 'Phvul.002G284600' => 'pvu', 'Phvul.003G258200' => 'pvu', 'Phvul.009G176500' => 'pvu', 'Potri.003G167201' => 'ptr', 'Potri.005G118400' => 'ptr', 'Potri.012G089000' => 'ptr', 'Potri.012G102800' => 'ptr', 'Potri.015G079400' => 'ptr', 'Potri.015G100900' => 'ptr', 'Pp3c14_9810' => 'ppa', 'Pp3c15_10450' => 'ppa', 'Pp3c20_19150' => 'ppa', 'Pp3c23_12740' => 'ppa', 'Pp3c23_6310' => 'ppa', 'Pp3c24_3720' => 'ppa', 'Pp3c27_2580' => 'ppa', 'Pp3c9_8990' => 'ppa', 'PRCOL_00002854' => 'pco', 'Prupe.1G221200' => 'ppe', 'Prupe.3G289000' => 'ppe', 'Prupe.5G147000' => 'ppe', 'Prupe.6G157300' => 'ppe', 'Prupe.7G163400' => 'ppe', 'Psat0s2177g0040' => 'psa', 'Psat3g174760' => 'psa', 'Psat3g192160' => 'psa', 'Psat4g058520' => 'psa', 'Psat4g096840' => 'psa', 'Psat7g037320' => 'psa', 'PSO017G1274' => 'pso', 'PSO017G5166' => 'pso', 'PSO063G4558' => 'pso', 'PSO170G4458' => 'pso', 'PSO170G5005' => 'pso', 'PSO210G6156' => 'pso', 'PSO210G6635' => 'pso', 'PSO210G7397' => 'pso', 'PSO210G7700' => 'pso', 'PSO455G0035' => 'pso', 'PSO455G0180' => 'pso', 'PSO478G4515' => 'pso', 'PSO832G1305' => 'pso', 'PSO832G3489' => 'pso', 'QL02p075247' => 'qlo', 'QL03p051148' => 'qlo', 'QL05p010313' => 'qlo', 'QL06p034627' => 'qlo', 'QL10p001889' => 'qlo', 'QL10p010846' => 'qlo', 'RcHm_v2.0_Chr1g0350621' => 'rch', 'RcHm_v2.0_Chr1g0350641' => 'rch', 'RcHm_v2.0_Chr2g0092891' => 'rch', 'RcHm_v2.0_Chr2g0100251' => 'rch', 'RcHm_v2.0_Chr2g0158661' => 'rch', 'RcHm_v2.0_Chr2g0172741' => 'rch', 'RcHm_v2.0_Chr4g0429571' => 'rch', 'RcHm_v2.0_Chr5g0042471' => 'rch', 'RcHm_v2.0_Chr7g0189451' => 'rch', 'Rhsim08G0052000' => 'rsi', 'Rhsim08G0174400' => 'rsi', 'Rhsim08G0193200' => 'rsi', 'Rhsim10G0214800' => 'rsi', 'Rhsim10G0214900' => 'rsi', 'Rhsim10G0215000' => 'rsi', 'Rhsim12G0022900' => 'rsi', 'Rhsim12G0177500' => 'rsi', 'Rhsim12G0177700' => 'rsi', 'Sabra03G0122600' => 'sbr', 'Sabra05G0097400' => 'sbr', 'Sabra12G0064100' => 'sbr', 'Sabra15G0121300' => 'sbr', 'SalBow2G0642' => 'sbo', 'SalBow5G2667' => 'sbo', 'SalBow5G4873' => 'sbo', 'SalBow8G2395' => 'sbo', 'Sc03g0003290' => 'sci', 'Sc10g0010130' => 'sci', 'Sc22g0003650' => 'sci', 'Sed0001603' => 'sed', 'Sed0004259' => 'sed', 'Sed0006789' => 'sed', 'Sed0011838' => 'sed', 'Sed0012964' => 'sed', 'Sed0016383' => 'sed', 'Sed0019010' => 'sed', 'Sed0020188' => 'sed', 'SEGI_04702' => 'sgi', 'SEGI_17231' => 'sgi', 'SEGI_18877' => 'sgi', 'SEGI_25196' => 'sgi', 'SEGI_25515' => 'sgi', 'SEGI_28445' => 'sgi', 'SEGI_37452' => 'sgi', 'SGA_v2.0_scaffold188G40336' => 'sas', 'SGA_v2.0_scaffold228G43247' => 'sas', 'SGA_v2.0_scaffold280G46853' => 'sas', 'SGA_v2.0_scaffold34G13808' => 'sas', 'SGA_v2.0_scaffold40G15576' => 'sas', 'SGA_v2.0_scaffold611G53188' => 'sas', 'SGA_v2.0_scaffold78G25461' => 'sas', 'SGA_v2.0_scaffold90G27888' => 'sas', 'SHI08601' => 'shi', 'SHI08606' => 'shi', 'SHI17117' => 'shi', 'SHI17119' => 'shi', 'SMO118G0201' => 'smo', 'SMO169G0247' => 'smo', 'SMO176G0006' => 'smo', 'SMO176G0015' => 'smo', 'SMO202G0006' => 'smo', 'SMO240G0050' => 'smo', 'SMO286G0009' => 'smo', 'SMO338G0033' => 'smo', 'SMO356G0533' => 'smo', 'SMO364G0382' => 'smo', 'SMO367G0166' => 'smo', 'SMO367G1098' => 'smo', 'Solyc01g009920.3' => 'sly', 'Solyc01g099300.3' => 'sly', 'Solyc02g084700.3' => 'sly', 'Solyc03g097520.3' => 'sly', 'Solyc06g071580.3' => 'sly', 'Solyc10g081760.3' => 'sly', 'Sopen01g005480' => 'spe', 'Sopen01g042850' => 'spe', 'Sopen02g029370' => 'spe', 'Sopen03g028280' => 'spe', 'Sopen06g027870' => 'spe', 'Sopen10g032270' => 'spe', 'Sp5g18180' => 'spa', 'Sp6g12880' => 'spa', 'Sp6g30850' => 'spa', 'Sp7g22960' => 'spa', 'Sp7g34010' => 'spa', 'SpUn1326_0010' => 'spa', 'TAR371G0242' => 'tar', 'TAR622G0638' => 'tar', 'TAR628G1548' => 'tar', 'TAR629G1079' => 'tar', 'TAR629G3413' => 'tar', 'THA.LOC104804249' => 'tha', 'THA.LOC104808315' => 'tha', 'THA.LOC104809238' => 'tha', 'THA.LOC104825484' => 'tha', 'Thecc.01G025500' => 'tca', 'Thecc.03G015800' => 'tca', 'Thecc.03G018000' => 'tca', 'Thecc.03G134800' => 'tca', 'Thecc.04G014700' => 'tca', 'Thhalv10006991m.g' => 'esa', 'Thhalv10012707m.g' => 'esa', 'Thhalv10015739m.g' => 'esa', 'Thhalv10024553m.g' => 'esa', 'Thhalv10024673m.g' => 'esa', 'Thhalv10029187m.g' => 'esa', 'TPR.G12971' => 'tpr', 'TPR.G29396' => 'tpr', 'TPR.G33376' => 'tpr', 'TPR.G35508' => 'tpr', 'TPR.G35516' => 'tpr', 'TPR.G37317' => 'tpr', 'TPR.G37389' => 'tpr', 'TPR.G37523' => 'tpr', 'TPR.G559' => 'tpr', 'TWI14G0070' => 'twi', 'TWI14G0729' => 'twi', 'TWI18G0596' => 'twi', 'TWI39G0780' => 'twi', 'TWI39G0850' => 'twi', 'TWI73G1052' => 'twi', 'unitig_52.g17485' => 'ugi', 'unitig_61.g26355' => 'ugi', 'vmacro01040' => 'vma', 'vmacro16731' => 'vma', 'vmacro18270' => 'vma', 'vmacro19142' => 'vma', 'vmacro19407' => 'vma', 'vmacro19408' => 'vma', 'vmacro21899' => 'vma', 'vmacro21900' => 'vma', 'vmacro21901' => 'vma', 'VMungo0251G0490' => 'vmu', 'VMungo0251G1748' => 'vmu', 'VMungo1309G0421' => 'vmu', 'Zm00001eb086500' => 'zma', 'Zm00001eb150680' => 'zma', 'Zm00001eb162330' => 'zma', 'Zm00001eb203130' => 'zma', 'Zm00001eb369480' => 'zma', 'Zm00001eb382340' => 'zma', 'Zm00001eb416360' => 'zma' ), 'gf_id' => 'HOM05D000902', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000902' ), 'data_identifier' => 'HOM05D000902', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000902', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '663', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02470' => 'bna', 'A01p16260' => 'bna', 'A02p01680' => 'bna', 'A03p16600' => 'bna', 'A03p55660' => 'bna', 'A03p64160' => 'bna', 'A03p64170' => 'bna', 'A08p31900' => 'bna', 'A09p59530' => 'bna', 'A10p08230' => 'bna', 'A10p25090' => 'bna', 'Aa31LG3G7100' => 'aar', 'Aa31LG3G7110' => 'aar', 'Aa31LG6G13160' => 'aar', 'Aa31LG7G10770' => 'aar', 'Aa31LG7G3830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2723' => 'aag', 'Actinidia08045' => 'ach', 'Actinidia08888' => 'ach', 'Actinidia18333' => 'ach', 'Actinidia19334' => 'ach', 'Actinidia25552' => 'ach', 'Actinidia26089' => 'ach', 'Actinidia30615' => 'ach', 'Actinidia30616' => 'ach', 'Actinidia33083' => 'ach', 'Actinidia35762' => 'ach', 'Ah.02g110620' => 'amhyb', 'Ah.11g046390' => 'amhyb', 'AL1G31670' => 'aly', 'AL6G23730' => 'aly', 'AL7G14740' => 'aly', 'AL7G14750' => 'aly', 'AL7G14760' => 'aly', 'AL7G28220' => 'aly', 'AL8G24940' => 'aly', 'Aqoxy3G01665' => 'aox', 'Aqoxy3G02853' => 'aox', 'Aqoxy5G01513' => 'aox', 'Aqoxy5G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8SKA4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ75LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKDA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0LJZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7REX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZP4YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWX7I5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2QKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS0L9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPCD8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q161UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC7XCF' => 'arhy', 'AT1G19100' => 'ath', 'AT4G24970' => 'ath', 'AT4G36270' => 'ath', 'AT4G36280' => 'ath', 'AT4G36290' => 'ath', 'AT5G13130' => 'ath', 'AT5G50780' => 'ath', 'ATR0582G266' => 'atr', 'ATR0661G195' => 'atr', 'ATR1152G031' => 'atr', 'Atru.chr11.2382' => 'acertr', 'Atru.chr12.2337' => 'acertr', 'Atru.chr3.744' => 'acertr', 'Atru.chr6.1870' => 'acertr', 'Atru.chr9.2515' => 'acertr', 'AUR62004120' => 'cqu', 'AUR62005667' => 'cqu', 'AUR62007634' => 'cqu', 'AUR62008186' => 'cqu', 'AUR62008187' => 'cqu', 'AUR62008188' => 'cqu', 'AUR62027954' => 'cqu', 'AUR62028766' => 'cqu', 'AUR62028767' => 'cqu', 'AUR62028768' => 'cqu', 'AUR62028886' => 'cqu', 'AUR62029563' => 'cqu', 'AUR62038832' => 'cqu', 'BcaB01g04149' => 'bca', 'BcaB03g12940' => 'bca', 'BcaB03g13090' => 'bca', 'BcaB03g14466' => 'bca', 'BcaB05g24035' => 'bca', 'BcaC01g06050' => 'bca', 'BcaC04g19148' => 'bca', 'BcaC04g20761' => 'bca', 'BcaC06g32845' => 'bca', 'BcaC07g41274' => 'bca', 'BcaC09g50827' => 'bca', 'BcaNung00741' => 'bca', 'BcaNung00742' => 'bca', 'BcaNung01859' => 'bca', 'BcaNung03985' => 'bca', 'BcaNung03989' => 'bca', 'BcaNung05661' => 'bca', 'BolC1t00257H' => 'bol', 'BolC1t01956H' => 'bol', 'BolC2t06534H' => 'bol', 'BolC3t14334H' => 'bol', 'BolC5t30451H' => 'bol', 'BolC7t45880H' => 'bol', 'BolC7t46586H' => 'bol', 'BolC8t49301H' => 'bol', 'BolC8t51837H' => 'bol', 'BolC9t56822H' => 'bol', 'BolC9t59235H' => 'bol', 'BraA01t00234Z' => 'bra', 'BraA01t01563Z' => 'bra', 'BraA02t05147Z' => 'bra', 'BraA03t10947Z' => 'bra', 'BraA03t14633Z' => 'bra', 'BraA08t35112Z' => 'bra', 'BraA09t41330Z' => 'bra', 'BraA10t44570Z' => 'bra', 'C01p02670' => 'bna', 'C01p20260' => 'bna', 'C02p05890' => 'bna', 'C03p19530' => 'bna', 'C05p17470' => 'bna', 'C07p53900' => 'bna', 'C07p61630' => 'bna', 'C08p16800' => 'bna', 'C08p42810' => 'bna', 'C09p39480' => 'bna', 'C09p63980' => 'bna', 'CAN.G1001.7' => 'can', 'CAN.G1034.55' => 'can', 'CAN.G143.7' => 'can', 'CAN.G3340.1' => 'can', 'CAN.G358.19' => 'can', 'CAN.G373.2' => 'can', 'CAN.G674.16' => 'can', 'CAN.G674.17' => 'can', 'CAN.G674.18' => 'can', 'CAN.G732.2' => 'can', 'CAN.G732.3' => 'can', 'CAN.G993.39' => 'can', 'CANSAT01G2052' => 'cansat', 'CANSAT80G0070' => 'cansat', 'CANSAT80G0483' => 'cansat', 'CANSAT80G0625' => 'cansat', 'CARHR019690' => 'chi', 'CARHR080280' => 'chi', 'CARHR152750' => 'chi', 'CARHR152760' => 'chi', 'CARHR152770' => 'chi', 'CARHR200340' => 'chi', 'CARHR232370' => 'chi', 'CARHR244670' => 'chi', 'CARHR244680' => 'chi', 'CARHR257520' => 'chi', 'Carub.0001s1872' => 'cru', 'Carub.0006s1130' => 'cru', 'Carub.0007s0396' => 'cru', 'Carub.0007s0397' => 'cru', 'Carub.0007s1608' => 'cru', 'Carub.0008s1068' => 'cru', 'Carub.0008s1077' => 'cru', 'Ca_16158_v3' => 'car', 'Ca_17571_v3' => 'car', 'Ca_21936_v3' => 'car', 'Ca_22350_v3' => 'car', 'CBR_g22445' => 'cbr', 'CBR_g26290' => 'cbr', 'Cc04_g09610' => 'ccan', 'Cc04_g12280' => 'ccan', 'Cc07_g10230' => 'ccan', 'CDE02G0093' => 'cde', 'CDE02G0701' => 'cde', 'CDE04G1050' => 'cde', 'CDE05G1833' => 'cde', 'CDE05G3058' => 'cde', 'CDE05G3380' => 'cde', 'CDE06G0536' => 'cde', 'Cfa006923' => 'cfa', 'Cfa009402' => 'cfa', 'Cfa018751' => 'cfa', 'Cfa019164' => 'cfa', 'Cfa022935' => 'cfa', 'Ciclev10019081m.g' => 'ccl', 'Ciclev10025076m.g' => 'ccl', 'Ciclev10030712m.g' => 'ccl', 'Ciclev10033760m.g' => 'ccl', 'CiPaw.05G105600' => 'cil', 'CiPaw.08G136700' => 'cil', 'CiPaw.11G003900' => 'cil', 'CiPaw.11G023700' => 'cil', 'CiPaw.12G003700' => 'cil', 'ClCG06G017100' => 'cla', 'ClCG06G018110' => 'cla', 'ClCG07G008800' => 'cla', 'ClCG07G015330' => 'cla', 'COL.COLO4_13698' => 'col', 'COL.COLO4_16659' => 'col', 'COL.COLO4_21986' => 'col', 'COL.COLO4_24049' => 'col', 'COL.COLO4_29061' => 'col', 'COL.COLO4_29075' => 'col', 'COL.COLO4_30094' => 'col', 'Cpa.g.c33689' => 'cpa', 'Cpa.g.sc108.39' => 'cpa', 'Cpa.g.sc108.41' => 'cpa', 'Cpa.g.sc1163.1' => 'cpa', 'Cpa.g.sc4.155' => 'cpa', 'Cpa.g.sc6.194' => 'cpa', 'CsaV3_1G000340' => 'csa', 'CsaV3_1G001400' => 'csa', 'CsaV3_4G002220' => 'csa', 'CsaV3_4G005370' => 'csa', 'CSS0007487' => 'camsi', 'CSS0008066' => 'camsi', 'CSS0009120' => 'camsi', 'CSS0015512' => 'camsi', 'CSS0022409' => 'camsi', 'CSS0025358' => 'camsi', 'CSS0044547' => 'camsi', 'DCAR_013057' => 'dca', 'DCAR_015058' => 'dca', 'DCAR_016027' => 'dca', 'DCAR_017327' => 'dca', 'DCAR_020743' => 'dca', 'DCAR_026157' => 'dca', 'DCAR_032339' => 'dca', 'DCAR_032340' => 'dca', 'Dinv11200' => 'din', 'Dinv11201' => 'din', 'Dinv20631' => 'din', 'Dinv23182' => 'din', 'Dinv33466' => 'din', 'Dinv33583' => 'din', 'Dinv38565' => 'din', 'Duzib068G0200' => 'dzi', 'Duzib147G0132' => 'dzi', 'Duzib147G0635' => 'dzi', 'Duzib205G1670' => 'dzi', 'Duzib251G0606' => 'dzi', 'ECA232G3336' => 'eca', 'ECA232G3763' => 'eca', 'ECA232G4845' => 'eca', 'ECA234G1607' => 'eca', 'ECA246G0932' => 'eca', 'ECA247G0781' => 'eca', 'ECA247G1932' => 'eca', 'ECA247G2079' => 'eca', 'ECA247G3338' => 'eca', 'ECA247G4115' => 'eca', 'EL10Ac3g06552' => 'bvu', 'EL10Ac5g10721' => 'bvu', 'EL10Ac5g10722' => 'bvu', 'EL10Ac5g10723' => 'bvu', 'EL10Ac5g11361' => 'bvu', 'EL10Ac6g13553' => 'bvu', 'EL10As8g23872' => 'bvu', 'Eucgr.B00250' => 'egr', 'Eucgr.B00251' => 'egr', 'Eucgr.B03533' => 'egr', 'Eucgr.I02381' => 'egr', 'Eucgr.K02700' => 'egr', 'FAN02G0174' => 'fan', 'FAN02G3146' => 'fan', 'FAN04G1672' => 'fan', 'FAN04G2273' => 'fan', 'FAN05G2791' => 'fan', 'FAN05G4035' => 'fan', 'FAN07G0834' => 'fan', 'FAN08G1198' => 'fan', 'FAN09G4182' => 'fan', 'FAN12G0496' => 'fan', 'FAN13G1027' => 'fan', 'FAN13G2951' => 'fan', 'FAN14G0705' => 'fan', 'FAN14G0720' => 'fan', 'FAN17G0201' => 'fan', 'FAN17G2665' => 'fan', 'FAN18G1456' => 'fan', 'FAN18G1525' => 'fan', 'FAN18G3500' => 'fan', 'FAN28G2670' => 'fan', 'FvH4_1g12391' => 'fve', 'FvH4_4g23220' => 'fve', 'FvH4_5g08810' => 'fve', 'FvH4_5g28960' => 'fve', 'FvH4_6g42820' => 'fve', 'FvH4_6g51110' => 'fve', 'Glyma.02G051802' => 'gma', 'Glyma.04G185300' => 'gma', 'Glyma.05G202900' => 'gma', 'Glyma.08G010300' => 'gma', 'Glyma.16G131900' => 'gma', 'Glyma.17G087900' => 'gma', 'Gohir.A07G048600' => 'ghi', 'Gohir.A11G179000' => 'ghi', 'Gohir.A12G140900' => 'ghi', 'Gohir.A12G140950' => 'ghi', 'Gohir.A12G191700' => 'ghi', 'Gohir.A13G086300' => 'ghi', 'Gohir.D07G052900' => 'ghi', 'Gohir.D11G186600' => 'ghi', 'Gohir.D12G145575' => 'ghi', 'Gohir.D12G145650' => 'ghi', 'Gohir.D12G145725' => 'ghi', 'Gohir.D12G194050' => 'ghi', 'Gohir.D13G091800' => 'ghi', 'Gorai.001G055900' => 'gra', 'Gorai.007G198400' => 'gra', 'Gorai.008G157000' => 'gra', 'Gorai.008G157100' => 'gra', 'Gorai.008G208700' => 'gra', 'Gorai.010G138700' => 'gra', 'GSVIVG01000977001' => 'vvi', 'GSVIVG01007708001' => 'vvi', 'GSVIVG01008587001' => 'vvi', 'GSVIVG01018849001' => 'vvi', 'GSVIVG01032432001' => 'vvi', 'HanXRQChr02g0034131' => 'han', 'HanXRQChr02g0035981' => 'han', 'HanXRQChr02g0035991' => 'han', 'HanXRQChr05g0155611' => 'han', 'HanXRQChr05g0155621' => 'han', 'HanXRQChr08g0236501' => 'han', 'HanXRQChr09g0261321' => 'han', 'HanXRQChr09g0272081' => 'han', 'HanXRQChr10g0310741' => 'han', 'HanXRQChr11g0325591' => 'han', 'HanXRQChr12g0385691' => 'han', 'HanXRQChr13g0387801' => 'han', 'HanXRQChr15g0463011' => 'han', 'Haze_03826' => 'cav', 'Haze_03827' => 'cav', 'Haze_07183' => 'cav', 'Haze_07537' => 'cav', 'Haze_07539' => 'cav', 'Haze_12461' => 'cav', 'Haze_16115' => 'cav', 'Haze_16808' => 'cav', 'Haze_18531' => 'cav', 'Hma1.2p1_0046F.1_g026700' => 'hma', 'Hma1.2p1_0046F.1_g026710' => 'hma', 'Hma1.2p1_0168F.1_g074340' => 'hma', 'Hma1.2p1_0266F.1_g107030' => 'hma', 'Hma1.2p1_0266F.1_g107060' => 'hma', 'Hma1.2p1_0275F.1_g110510' => 'hma', 'Hma1.2p1_0592F.1_g185490' => 'hma', 'Hma1.2p1_0592F.1_g185500' => 'hma', 'Hma1.2p1_0592F.1_g185510' => 'hma', 'Hma1.2p1_0592F.1_g185520' => 'hma', 'Hma1.2p1_0592F.1_g185530' => 'hma', 'Hma1.2p1_0818F.1_g223450' => 'hma', 'HPP92_009708' => 'vpl', 'HPP92_009793' => 'vpl', 'HPP92_009796' => 'vpl', 'HPP92_009797' => 'vpl', 'HPP92_014940' => 'vpl', 'HPP92_014988' => 'vpl', 'Hund02463' => 'sun', 'Hund02760' => 'sun', 'Hund05071' => 'sun', 'Hund10108' => 'sun', 'Hund11204' => 'sun', 'Hund14016' => 'sun', 'Hund16464' => 'sun', 'Lalb_Chr09g0333391' => 'lal', 'Lalb_Chr11g0070461' => 'lal', 'Lalb_Chr12g0201671' => 'lal', 'Lalb_Chr13g0297161' => 'lal', 'Lj1g0002823' => 'lja', 'Lj3C1074T6' => 'lonja', 'Lj4A212T28' => 'lonja', 'Lj4g0005516' => 'lja', 'Lj4g0013705' => 'lja', 'Lj4g0027865' => 'lja', 'Lj5C92G16' => 'lonja', 'Lj5C92T12' => 'lonja', 'Lj7C596T3' => 'lonja', 'Lj9A446G59' => 'lonja', 'Lj9A482G21' => 'lonja', 'Lsat_1_v5_gn_1_28261' => 'lsa', 'Lsat_1_v5_gn_1_28281' => 'lsa', 'Lsat_1_v5_gn_1_32721' => 'lsa', 'Lsat_1_v5_gn_4_151760' => 'lsa', 'Lsat_1_v5_gn_4_2120' => 'lsa', 'Lsat_1_v5_gn_4_75761' => 'lsa', 'Lsat_1_v5_gn_5_10920' => 'lsa', 'Manes.02G099900' => 'mes', 'Manes.11G096200' => 'mes', 'Manes.12G007200' => 'mes', 'Manes.14G048300' => 'mes', 'Manes.17G114700' => 'mes', 'Mapoly0002s0070' => 'mpo', 'Mapoly0029s0099' => 'mpo', 'MBI07_g24742_MAGBIO' => 'mbi', 'MBI10_g27988_MAGBIO' => 'mbi', 'MBI11_g13057_MAGBIO' => 'mbi', 'MD02G1137200' => 'mdo', 'MD06G1137200' => 'mdo', 'MD07G1122300' => 'mdo', 'MD09G1078200' => 'mdo', 'MD13G1123700' => 'mdo', 'MD14G1151900' => 'mdo', 'MD17G1030900' => 'mdo', 'MD17G1068200' => 'mdo', 'MD17G1068600' => 'mdo', 'Medtr3g077540' => 'mtr', 'Medtr4g105530' => 'mtr', 'Medtr8g076580' => 'mtr', 'Medtr8g076590' => 'mtr', 'Medtr8g096410' => 'mtr', 'MELO3C016411.2' => 'cme', 'MELO3C017780.2' => 'cme', 'MELO3C022560.2' => 'cme', 'MELO3C026187.2' => 'cme', 'MELO3C026286.2' => 'cme', 'MELO3C032854.2' => 'cme', 'Migut.H02495' => 'egut', 'Migut.I00561' => 'egut', 'Migut.K01015' => 'egut', 'Migut.K01016' => 'egut', 'Migut.L00743' => 'egut', 'Migut.L00744' => 'egut', 'Migut.L00746' => 'egut', 'Migut.L00798' => 'egut', 'Migut.L00799' => 'egut', 'Migut.N02096' => 'egut', 'MSTRG.11259' => 'ama', 'MSTRG.23142' => 'ama', 'MSTRG.2499' => 'ama', 'Nitab4.5_0000003g0730' => 'nta', 'Nitab4.5_0000137g0020' => 'nta', 'Nitab4.5_0000721g0210' => 'nta', 'Nitab4.5_0000723g0050' => 'nta', 'Nitab4.5_0000913g0070' => 'nta', 'Nitab4.5_0001332g0040' => 'nta', 'Nitab4.5_0001771g0050' => 'nta', 'Nitab4.5_0001918g0050' => 'nta', 'Nitab4.5_0002686g0030' => 'nta', 'Nitab4.5_0003156g0020' => 'nta', 'Nitab4.5_0003383g0040' => 'nta', 'Nitab4.5_0003918g0010' => 'nta', 'Nitab4.5_0006760g0010' => 'nta', 'Nn1g05981' => 'nnu', 'Nn1g06288' => 'nnu', 'Nn3g16371' => 'nnu', 'Nn3g16786' => 'nnu', 'Nn4g22232' => 'nnu', 'Oeu005144.1' => 'oeu', 'Oeu005145.1' => 'oeu', 'Oeu011348.1' => 'oeu', 'Oeu016415.1' => 'oeu', 'Oeu023501.1' => 'oeu', 'Oeu044473.1' => 'oeu', 'Oeu048892.2' => 'oeu', 'Os01g0549200' => 'osa', 'Os02g0469300' => 'osa', 'Os04g0311100' => 'osa', 'Os06g0474900' => 'osa', 'Os10g0181700' => 'osa', 'Os11g0454800' => 'osa', 'Peaxi162Scf00037g00714' => 'pax', 'Peaxi162Scf00084g01217' => 'pax', 'Peaxi162Scf00257g00217' => 'pax', 'Peaxi162Scf00516g00215' => 'pax', 'Peaxi162Scf00689g00123' => 'pax', 'PGR044G2719' => 'pgr', 'PGR083G1360' => 'pgr', 'PGR102G2849' => 'pgr', 'PGR119G2534' => 'pgr', 'PGSC0003DMG400003538' => 'stu', 'PGSC0003DMG400028138' => 'stu', 'PGSC0003DMG400031732' => 'stu', 'PGSC0003DMG400038165' => 'stu', 'Phvul.002G284600' => 'pvu', 'Phvul.003G258200' => 'pvu', 'Phvul.009G176500' => 'pvu', 'Potri.003G167201' => 'ptr', 'Potri.005G118400' => 'ptr', 'Potri.012G089000' => 'ptr', 'Potri.012G102800' => 'ptr', 'Potri.015G079400' => 'ptr', 'Potri.015G100900' => 'ptr', 'Pp3c14_9810' => 'ppa', 'Pp3c15_10450' => 'ppa', 'Pp3c20_19150' => 'ppa', 'Pp3c23_12740' => 'ppa', 'Pp3c23_6310' => 'ppa', 'Pp3c24_3720' => 'ppa', 'Pp3c27_2580' => 'ppa', 'Pp3c9_8990' => 'ppa', 'PRCOL_00002854' => 'pco', 'Prupe.1G221200' => 'ppe', 'Prupe.3G289000' => 'ppe', 'Prupe.5G147000' => 'ppe', 'Prupe.6G157300' => 'ppe', 'Prupe.7G163400' => 'ppe', 'Psat0s2177g0040' => 'psa', 'Psat3g174760' => 'psa', 'Psat3g192160' => 'psa', 'Psat4g058520' => 'psa', 'Psat4g096840' => 'psa', 'Psat7g037320' => 'psa', 'PSO017G1274' => 'pso', 'PSO017G5166' => 'pso', 'PSO063G4558' => 'pso', 'PSO170G4458' => 'pso', 'PSO170G5005' => 'pso', 'PSO210G6156' => 'pso', 'PSO210G6635' => 'pso', 'PSO210G7397' => 'pso', 'PSO210G7700' => 'pso', 'PSO455G0035' => 'pso', 'PSO455G0180' => 'pso', 'PSO478G4515' => 'pso', 'PSO832G1305' => 'pso', 'PSO832G3489' => 'pso', 'QL02p075247' => 'qlo', 'QL03p051148' => 'qlo', 'QL05p010313' => 'qlo', 'QL06p034627' => 'qlo', 'QL10p001889' => 'qlo', 'QL10p010846' => 'qlo', 'RcHm_v2.0_Chr1g0350621' => 'rch', 'RcHm_v2.0_Chr1g0350641' => 'rch', 'RcHm_v2.0_Chr2g0092891' => 'rch', 'RcHm_v2.0_Chr2g0100251' => 'rch', 'RcHm_v2.0_Chr2g0158661' => 'rch', 'RcHm_v2.0_Chr2g0172741' => 'rch', 'RcHm_v2.0_Chr4g0429571' => 'rch', 'RcHm_v2.0_Chr5g0042471' => 'rch', 'RcHm_v2.0_Chr7g0189451' => 'rch', 'Rhsim08G0052000' => 'rsi', 'Rhsim08G0174400' => 'rsi', 'Rhsim08G0193200' => 'rsi', 'Rhsim10G0214800' => 'rsi', 'Rhsim10G0214900' => 'rsi', 'Rhsim10G0215000' => 'rsi', 'Rhsim12G0022900' => 'rsi', 'Rhsim12G0177500' => 'rsi', 'Rhsim12G0177700' => 'rsi', 'Sabra03G0122600' => 'sbr', 'Sabra05G0097400' => 'sbr', 'Sabra12G0064100' => 'sbr', 'Sabra15G0121300' => 'sbr', 'SalBow2G0642' => 'sbo', 'SalBow5G2667' => 'sbo', 'SalBow5G4873' => 'sbo', 'SalBow8G2395' => 'sbo', 'Sc03g0003290' => 'sci', 'Sc10g0010130' => 'sci', 'Sc22g0003650' => 'sci', 'Sed0001603' => 'sed', 'Sed0004259' => 'sed', 'Sed0006789' => 'sed', 'Sed0011838' => 'sed', 'Sed0012964' => 'sed', 'Sed0016383' => 'sed', 'Sed0019010' => 'sed', 'Sed0020188' => 'sed', 'SEGI_04702' => 'sgi', 'SEGI_17231' => 'sgi', 'SEGI_18877' => 'sgi', 'SEGI_25196' => 'sgi', 'SEGI_25515' => 'sgi', 'SEGI_28445' => 'sgi', 'SEGI_37452' => 'sgi', 'SGA_v2.0_scaffold188G40336' => 'sas', 'SGA_v2.0_scaffold228G43247' => 'sas', 'SGA_v2.0_scaffold280G46853' => 'sas', 'SGA_v2.0_scaffold34G13808' => 'sas', 'SGA_v2.0_scaffold40G15576' => 'sas', 'SGA_v2.0_scaffold611G53188' => 'sas', 'SGA_v2.0_scaffold78G25461' => 'sas', 'SGA_v2.0_scaffold90G27888' => 'sas', 'SHI08601' => 'shi', 'SHI08606' => 'shi', 'SHI17117' => 'shi', 'SHI17119' => 'shi', 'SMO118G0201' => 'smo', 'SMO169G0247' => 'smo', 'SMO176G0006' => 'smo', 'SMO176G0015' => 'smo', 'SMO202G0006' => 'smo', 'SMO240G0050' => 'smo', 'SMO286G0009' => 'smo', 'SMO338G0033' => 'smo', 'SMO356G0533' => 'smo', 'SMO364G0382' => 'smo', 'SMO367G0166' => 'smo', 'SMO367G1098' => 'smo', 'Solyc01g009920.3' => 'sly', 'Solyc01g099300.3' => 'sly', 'Solyc02g084700.3' => 'sly', 'Solyc03g097520.3' => 'sly', 'Solyc06g071580.3' => 'sly', 'Solyc10g081760.3' => 'sly', 'Sopen01g005480' => 'spe', 'Sopen01g042850' => 'spe', 'Sopen02g029370' => 'spe', 'Sopen03g028280' => 'spe', 'Sopen06g027870' => 'spe', 'Sopen10g032270' => 'spe', 'Sp5g18180' => 'spa', 'Sp6g12880' => 'spa', 'Sp6g30850' => 'spa', 'Sp7g22960' => 'spa', 'Sp7g34010' => 'spa', 'SpUn1326_0010' => 'spa', 'TAR371G0242' => 'tar', 'TAR622G0638' => 'tar', 'TAR628G1548' => 'tar', 'TAR629G1079' => 'tar', 'TAR629G3413' => 'tar', 'THA.LOC104804249' => 'tha', 'THA.LOC104808315' => 'tha', 'THA.LOC104809238' => 'tha', 'THA.LOC104825484' => 'tha', 'Thecc.01G025500' => 'tca', 'Thecc.03G015800' => 'tca', 'Thecc.03G018000' => 'tca', 'Thecc.03G134800' => 'tca', 'Thecc.04G014700' => 'tca', 'Thhalv10006991m.g' => 'esa', 'Thhalv10012707m.g' => 'esa', 'Thhalv10015739m.g' => 'esa', 'Thhalv10024553m.g' => 'esa', 'Thhalv10024673m.g' => 'esa', 'Thhalv10029187m.g' => 'esa', 'TPR.G12971' => 'tpr', 'TPR.G29396' => 'tpr', 'TPR.G33376' => 'tpr', 'TPR.G35508' => 'tpr', 'TPR.G35516' => 'tpr', 'TPR.G37317' => 'tpr', 'TPR.G37389' => 'tpr', 'TPR.G37523' => 'tpr', 'TPR.G559' => 'tpr', 'TWI14G0070' => 'twi', 'TWI14G0729' => 'twi', 'TWI18G0596' => 'twi', 'TWI39G0780' => 'twi', 'TWI39G0850' => 'twi', 'TWI73G1052' => 'twi', 'unitig_52.g17485' => 'ugi', 'unitig_61.g26355' => 'ugi', 'vmacro01040' => 'vma', 'vmacro16731' => 'vma', 'vmacro18270' => 'vma', 'vmacro19142' => 'vma', 'vmacro19407' => 'vma', 'vmacro19408' => 'vma', 'vmacro21899' => 'vma', 'vmacro21900' => 'vma', 'vmacro21901' => 'vma', 'VMungo0251G0490' => 'vmu', 'VMungo0251G1748' => 'vmu', 'VMungo1309G0421' => 'vmu', 'Zm00001eb086500' => 'zma', 'Zm00001eb150680' => 'zma', 'Zm00001eb162330' => 'zma', 'Zm00001eb203130' => 'zma', 'Zm00001eb369480' => 'zma', 'Zm00001eb382340' => 'zma', 'Zm00001eb416360' => 'zma' ) $gf_id = 'HOM05D000902' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000902' ) $data_identifier = 'HOM05D000902' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 13, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 10, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 6, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 9, 'hma' => (int) 12, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 4, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 6, 'ppa' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 6, 'rch' => (int) 9, 'rsi' => (int) 9, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 12, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 3, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416360' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000902', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '663', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02470' => 'bna', 'A01p16260' => 'bna', 'A02p01680' => 'bna', 'A03p16600' => 'bna', 'A03p55660' => 'bna', 'A03p64160' => 'bna', 'A03p64170' => 'bna', 'A08p31900' => 'bna', 'A09p59530' => 'bna', 'A10p08230' => 'bna', 'A10p25090' => 'bna', 'Aa31LG3G7100' => 'aar', 'Aa31LG3G7110' => 'aar', 'Aa31LG6G13160' => 'aar', 'Aa31LG7G10770' => 'aar', 'Aa31LG7G3830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2723' => 'aag', 'Actinidia08045' => 'ach', 'Actinidia08888' => 'ach', 'Actinidia18333' => 'ach', 'Actinidia19334' => 'ach', 'Actinidia25552' => 'ach', 'Actinidia26089' => 'ach', 'Actinidia30615' => 'ach', 'Actinidia30616' => 'ach', 'Actinidia33083' => 'ach', 'Actinidia35762' => 'ach', 'Ah.02g110620' => 'amhyb', 'Ah.11g046390' => 'amhyb', 'AL1G31670' => 'aly', 'AL6G23730' => 'aly', 'AL7G14740' => 'aly', 'AL7G14750' => 'aly', 'AL7G14760' => 'aly', 'AL7G28220' => 'aly', 'AL8G24940' => 'aly', 'Aqoxy3G01665' => 'aox', 'Aqoxy3G02853' => 'aox', 'Aqoxy5G01513' => 'aox', 'Aqoxy5G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8SKA4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ75LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKDA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0LJZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7REX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZP4YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWX7I5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2QKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS0L9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPCD8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q161UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC7XCF' => 'arhy', 'AT1G19100' => 'ath', 'AT4G24970' => 'ath', 'AT4G36270' => 'ath', 'AT4G36280' => 'ath', 'AT4G36290' => 'ath', 'AT5G13130' => 'ath', 'AT5G50780' => 'ath', 'ATR0582G266' => 'atr', 'ATR0661G195' => 'atr', 'ATR1152G031' => 'atr', 'Atru.chr11.2382' => 'acertr', 'Atru.chr12.2337' => 'acertr', 'Atru.chr3.744' => 'acertr', 'Atru.chr6.1870' => 'acertr', 'Atru.chr9.2515' => 'acertr', 'AUR62004120' => 'cqu', 'AUR62005667' => 'cqu', 'AUR62007634' => 'cqu', 'AUR62008186' => 'cqu', 'AUR62008187' => 'cqu', 'AUR62008188' => 'cqu', 'AUR62027954' => 'cqu', 'AUR62028766' => 'cqu', 'AUR62028767' => 'cqu', 'AUR62028768' => 'cqu', 'AUR62028886' => 'cqu', 'AUR62029563' => 'cqu', 'AUR62038832' => 'cqu', 'BcaB01g04149' => 'bca', 'BcaB03g12940' => 'bca', 'BcaB03g13090' => 'bca', 'BcaB03g14466' => 'bca', 'BcaB05g24035' => 'bca', 'BcaC01g06050' => 'bca', 'BcaC04g19148' => 'bca', 'BcaC04g20761' => 'bca', 'BcaC06g32845' => 'bca', 'BcaC07g41274' => 'bca', 'BcaC09g50827' => 'bca', 'BcaNung00741' => 'bca', 'BcaNung00742' => 'bca', 'BcaNung01859' => 'bca', 'BcaNung03985' => 'bca', 'BcaNung03989' => 'bca', 'BcaNung05661' => 'bca', 'BolC1t00257H' => 'bol', 'BolC1t01956H' => 'bol', 'BolC2t06534H' => 'bol', 'BolC3t14334H' => 'bol', 'BolC5t30451H' => 'bol', 'BolC7t45880H' => 'bol', 'BolC7t46586H' => 'bol', 'BolC8t49301H' => 'bol', 'BolC8t51837H' => 'bol', 'BolC9t56822H' => 'bol', 'BolC9t59235H' => 'bol', 'BraA01t00234Z' => 'bra', 'BraA01t01563Z' => 'bra', 'BraA02t05147Z' => 'bra', 'BraA03t10947Z' => 'bra', 'BraA03t14633Z' => 'bra', 'BraA08t35112Z' => 'bra', 'BraA09t41330Z' => 'bra', 'BraA10t44570Z' => 'bra', 'C01p02670' => 'bna', 'C01p20260' => 'bna', 'C02p05890' => 'bna', 'C03p19530' => 'bna', 'C05p17470' => 'bna', 'C07p53900' => 'bna', 'C07p61630' => 'bna', 'C08p16800' => 'bna', 'C08p42810' => 'bna', 'C09p39480' => 'bna', 'C09p63980' => 'bna', 'CAN.G1001.7' => 'can', 'CAN.G1034.55' => 'can', 'CAN.G143.7' => 'can', 'CAN.G3340.1' => 'can', 'CAN.G358.19' => 'can', 'CAN.G373.2' => 'can', 'CAN.G674.16' => 'can', 'CAN.G674.17' => 'can', 'CAN.G674.18' => 'can', 'CAN.G732.2' => 'can', 'CAN.G732.3' => 'can', 'CAN.G993.39' => 'can', 'CANSAT01G2052' => 'cansat', 'CANSAT80G0070' => 'cansat', 'CANSAT80G0483' => 'cansat', 'CANSAT80G0625' => 'cansat', 'CARHR019690' => 'chi', 'CARHR080280' => 'chi', 'CARHR152750' => 'chi', 'CARHR152760' => 'chi', 'CARHR152770' => 'chi', 'CARHR200340' => 'chi', 'CARHR232370' => 'chi', 'CARHR244670' => 'chi', 'CARHR244680' => 'chi', 'CARHR257520' => 'chi', 'Carub.0001s1872' => 'cru', 'Carub.0006s1130' => 'cru', 'Carub.0007s0396' => 'cru', 'Carub.0007s0397' => 'cru', 'Carub.0007s1608' => 'cru', 'Carub.0008s1068' => 'cru', 'Carub.0008s1077' => 'cru', 'Ca_16158_v3' => 'car', 'Ca_17571_v3' => 'car', 'Ca_21936_v3' => 'car', 'Ca_22350_v3' => 'car', 'CBR_g22445' => 'cbr', 'CBR_g26290' => 'cbr', 'Cc04_g09610' => 'ccan', 'Cc04_g12280' => 'ccan', 'Cc07_g10230' => 'ccan', 'CDE02G0093' => 'cde', 'CDE02G0701' => 'cde', 'CDE04G1050' => 'cde', 'CDE05G1833' => 'cde', 'CDE05G3058' => 'cde', 'CDE05G3380' => 'cde', 'CDE06G0536' => 'cde', 'Cfa006923' => 'cfa', 'Cfa009402' => 'cfa', 'Cfa018751' => 'cfa', 'Cfa019164' => 'cfa', 'Cfa022935' => 'cfa', 'Ciclev10019081m.g' => 'ccl', 'Ciclev10025076m.g' => 'ccl', 'Ciclev10030712m.g' => 'ccl', 'Ciclev10033760m.g' => 'ccl', 'CiPaw.05G105600' => 'cil', 'CiPaw.08G136700' => 'cil', 'CiPaw.11G003900' => 'cil', 'CiPaw.11G023700' => 'cil', 'CiPaw.12G003700' => 'cil', 'ClCG06G017100' => 'cla', 'ClCG06G018110' => 'cla', 'ClCG07G008800' => 'cla', 'ClCG07G015330' => 'cla', 'COL.COLO4_13698' => 'col', 'COL.COLO4_16659' => 'col', 'COL.COLO4_21986' => 'col', 'COL.COLO4_24049' => 'col', 'COL.COLO4_29061' => 'col', 'COL.COLO4_29075' => 'col', 'COL.COLO4_30094' => 'col', 'Cpa.g.c33689' => 'cpa', 'Cpa.g.sc108.39' => 'cpa', 'Cpa.g.sc108.41' => 'cpa', 'Cpa.g.sc1163.1' => 'cpa', 'Cpa.g.sc4.155' => 'cpa', 'Cpa.g.sc6.194' => 'cpa', 'CsaV3_1G000340' => 'csa', 'CsaV3_1G001400' => 'csa', 'CsaV3_4G002220' => 'csa', 'CsaV3_4G005370' => 'csa', 'CSS0007487' => 'camsi', 'CSS0008066' => 'camsi', 'CSS0009120' => 'camsi', 'CSS0015512' => 'camsi', 'CSS0022409' => 'camsi', 'CSS0025358' => 'camsi', 'CSS0044547' => 'camsi', 'DCAR_013057' => 'dca', 'DCAR_015058' => 'dca', 'DCAR_016027' => 'dca', 'DCAR_017327' => 'dca', 'DCAR_020743' => 'dca', 'DCAR_026157' => 'dca', 'DCAR_032339' => 'dca', 'DCAR_032340' => 'dca', 'Dinv11200' => 'din', 'Dinv11201' => 'din', 'Dinv20631' => 'din', 'Dinv23182' => 'din', 'Dinv33466' => 'din', 'Dinv33583' => 'din', 'Dinv38565' => 'din', 'Duzib068G0200' => 'dzi', 'Duzib147G0132' => 'dzi', 'Duzib147G0635' => 'dzi', 'Duzib205G1670' => 'dzi', 'Duzib251G0606' => 'dzi', 'ECA232G3336' => 'eca', 'ECA232G3763' => 'eca', 'ECA232G4845' => 'eca', 'ECA234G1607' => 'eca', 'ECA246G0932' => 'eca', 'ECA247G0781' => 'eca', 'ECA247G1932' => 'eca', 'ECA247G2079' => 'eca', 'ECA247G3338' => 'eca', 'ECA247G4115' => 'eca', 'EL10Ac3g06552' => 'bvu', 'EL10Ac5g10721' => 'bvu', 'EL10Ac5g10722' => 'bvu', 'EL10Ac5g10723' => 'bvu', 'EL10Ac5g11361' => 'bvu', 'EL10Ac6g13553' => 'bvu', 'EL10As8g23872' => 'bvu', 'Eucgr.B00250' => 'egr', 'Eucgr.B00251' => 'egr', 'Eucgr.B03533' => 'egr', 'Eucgr.I02381' => 'egr', 'Eucgr.K02700' => 'egr', 'FAN02G0174' => 'fan', 'FAN02G3146' => 'fan', 'FAN04G1672' => 'fan', 'FAN04G2273' => 'fan', 'FAN05G2791' => 'fan', 'FAN05G4035' => 'fan', 'FAN07G0834' => 'fan', 'FAN08G1198' => 'fan', 'FAN09G4182' => 'fan', 'FAN12G0496' => 'fan', 'FAN13G1027' => 'fan', 'FAN13G2951' => 'fan', 'FAN14G0705' => 'fan', 'FAN14G0720' => 'fan', 'FAN17G0201' => 'fan', 'FAN17G2665' => 'fan', 'FAN18G1456' => 'fan', 'FAN18G1525' => 'fan', 'FAN18G3500' => 'fan', 'FAN28G2670' => 'fan', 'FvH4_1g12391' => 'fve', 'FvH4_4g23220' => 'fve', 'FvH4_5g08810' => 'fve', 'FvH4_5g28960' => 'fve', 'FvH4_6g42820' => 'fve', 'FvH4_6g51110' => 'fve', 'Glyma.02G051802' => 'gma', 'Glyma.04G185300' => 'gma', 'Glyma.05G202900' => 'gma', 'Glyma.08G010300' => 'gma', 'Glyma.16G131900' => 'gma', 'Glyma.17G087900' => 'gma', 'Gohir.A07G048600' => 'ghi', 'Gohir.A11G179000' => 'ghi', 'Gohir.A12G140900' => 'ghi', 'Gohir.A12G140950' => 'ghi', 'Gohir.A12G191700' => 'ghi', 'Gohir.A13G086300' => 'ghi', 'Gohir.D07G052900' => 'ghi', 'Gohir.D11G186600' => 'ghi', 'Gohir.D12G145575' => 'ghi', 'Gohir.D12G145650' => 'ghi', 'Gohir.D12G145725' => 'ghi', 'Gohir.D12G194050' => 'ghi', 'Gohir.D13G091800' => 'ghi', 'Gorai.001G055900' => 'gra', 'Gorai.007G198400' => 'gra', 'Gorai.008G157000' => 'gra', 'Gorai.008G157100' => 'gra', 'Gorai.008G208700' => 'gra', 'Gorai.010G138700' => 'gra', 'GSVIVG01000977001' => 'vvi', 'GSVIVG01007708001' => 'vvi', 'GSVIVG01008587001' => 'vvi', 'GSVIVG01018849001' => 'vvi', 'GSVIVG01032432001' => 'vvi', 'HanXRQChr02g0034131' => 'han', 'HanXRQChr02g0035981' => 'han', 'HanXRQChr02g0035991' => 'han', 'HanXRQChr05g0155611' => 'han', 'HanXRQChr05g0155621' => 'han', 'HanXRQChr08g0236501' => 'han', 'HanXRQChr09g0261321' => 'han', 'HanXRQChr09g0272081' => 'han', 'HanXRQChr10g0310741' => 'han', 'HanXRQChr11g0325591' => 'han', 'HanXRQChr12g0385691' => 'han', 'HanXRQChr13g0387801' => 'han', 'HanXRQChr15g0463011' => 'han', 'Haze_03826' => 'cav', 'Haze_03827' => 'cav', 'Haze_07183' => 'cav', 'Haze_07537' => 'cav', 'Haze_07539' => 'cav', 'Haze_12461' => 'cav', 'Haze_16115' => 'cav', 'Haze_16808' => 'cav', 'Haze_18531' => 'cav', 'Hma1.2p1_0046F.1_g026700' => 'hma', 'Hma1.2p1_0046F.1_g026710' => 'hma', 'Hma1.2p1_0168F.1_g074340' => 'hma', 'Hma1.2p1_0266F.1_g107030' => 'hma', 'Hma1.2p1_0266F.1_g107060' => 'hma', 'Hma1.2p1_0275F.1_g110510' => 'hma', 'Hma1.2p1_0592F.1_g185490' => 'hma', 'Hma1.2p1_0592F.1_g185500' => 'hma', 'Hma1.2p1_0592F.1_g185510' => 'hma', 'Hma1.2p1_0592F.1_g185520' => 'hma', 'Hma1.2p1_0592F.1_g185530' => 'hma', 'Hma1.2p1_0818F.1_g223450' => 'hma', 'HPP92_009708' => 'vpl', 'HPP92_009793' => 'vpl', 'HPP92_009796' => 'vpl', 'HPP92_009797' => 'vpl', 'HPP92_014940' => 'vpl', 'HPP92_014988' => 'vpl', 'Hund02463' => 'sun', 'Hund02760' => 'sun', 'Hund05071' => 'sun', 'Hund10108' => 'sun', 'Hund11204' => 'sun', 'Hund14016' => 'sun', 'Hund16464' => 'sun', 'Lalb_Chr09g0333391' => 'lal', 'Lalb_Chr11g0070461' => 'lal', 'Lalb_Chr12g0201671' => 'lal', 'Lalb_Chr13g0297161' => 'lal', 'Lj1g0002823' => 'lja', 'Lj3C1074T6' => 'lonja', 'Lj4A212T28' => 'lonja', 'Lj4g0005516' => 'lja', 'Lj4g0013705' => 'lja', 'Lj4g0027865' => 'lja', 'Lj5C92G16' => 'lonja', 'Lj5C92T12' => 'lonja', 'Lj7C596T3' => 'lonja', 'Lj9A446G59' => 'lonja', 'Lj9A482G21' => 'lonja', 'Lsat_1_v5_gn_1_28261' => 'lsa', 'Lsat_1_v5_gn_1_28281' => 'lsa', 'Lsat_1_v5_gn_1_32721' => 'lsa', 'Lsat_1_v5_gn_4_151760' => 'lsa', 'Lsat_1_v5_gn_4_2120' => 'lsa', 'Lsat_1_v5_gn_4_75761' => 'lsa', 'Lsat_1_v5_gn_5_10920' => 'lsa', 'Manes.02G099900' => 'mes', 'Manes.11G096200' => 'mes', 'Manes.12G007200' => 'mes', 'Manes.14G048300' => 'mes', 'Manes.17G114700' => 'mes', 'Mapoly0002s0070' => 'mpo', 'Mapoly0029s0099' => 'mpo', 'MBI07_g24742_MAGBIO' => 'mbi', 'MBI10_g27988_MAGBIO' => 'mbi', 'MBI11_g13057_MAGBIO' => 'mbi', 'MD02G1137200' => 'mdo', 'MD06G1137200' => 'mdo', 'MD07G1122300' => 'mdo', 'MD09G1078200' => 'mdo', 'MD13G1123700' => 'mdo', 'MD14G1151900' => 'mdo', 'MD17G1030900' => 'mdo', 'MD17G1068200' => 'mdo', 'MD17G1068600' => 'mdo', 'Medtr3g077540' => 'mtr', 'Medtr4g105530' => 'mtr', 'Medtr8g076580' => 'mtr', 'Medtr8g076590' => 'mtr', 'Medtr8g096410' => 'mtr', 'MELO3C016411.2' => 'cme', 'MELO3C017780.2' => 'cme', 'MELO3C022560.2' => 'cme', 'MELO3C026187.2' => 'cme', 'MELO3C026286.2' => 'cme', 'MELO3C032854.2' => 'cme', 'Migut.H02495' => 'egut', 'Migut.I00561' => 'egut', 'Migut.K01015' => 'egut', 'Migut.K01016' => 'egut', 'Migut.L00743' => 'egut', 'Migut.L00744' => 'egut', 'Migut.L00746' => 'egut', 'Migut.L00798' => 'egut', 'Migut.L00799' => 'egut', 'Migut.N02096' => 'egut', 'MSTRG.11259' => 'ama', 'MSTRG.23142' => 'ama', 'MSTRG.2499' => 'ama', 'Nitab4.5_0000003g0730' => 'nta', 'Nitab4.5_0000137g0020' => 'nta', 'Nitab4.5_0000721g0210' => 'nta', 'Nitab4.5_0000723g0050' => 'nta', 'Nitab4.5_0000913g0070' => 'nta', 'Nitab4.5_0001332g0040' => 'nta', 'Nitab4.5_0001771g0050' => 'nta', 'Nitab4.5_0001918g0050' => 'nta', 'Nitab4.5_0002686g0030' => 'nta', 'Nitab4.5_0003156g0020' => 'nta', 'Nitab4.5_0003383g0040' => 'nta', 'Nitab4.5_0003918g0010' => 'nta', 'Nitab4.5_0006760g0010' => 'nta', 'Nn1g05981' => 'nnu', 'Nn1g06288' => 'nnu', 'Nn3g16371' => 'nnu', 'Nn3g16786' => 'nnu', 'Nn4g22232' => 'nnu', 'Oeu005144.1' => 'oeu', 'Oeu005145.1' => 'oeu', 'Oeu011348.1' => 'oeu', 'Oeu016415.1' => 'oeu', 'Oeu023501.1' => 'oeu', 'Oeu044473.1' => 'oeu', 'Oeu048892.2' => 'oeu', 'Os01g0549200' => 'osa', 'Os02g0469300' => 'osa', 'Os04g0311100' => 'osa', 'Os06g0474900' => 'osa', 'Os10g0181700' => 'osa', 'Os11g0454800' => 'osa', 'Peaxi162Scf00037g00714' => 'pax', 'Peaxi162Scf00084g01217' => 'pax', 'Peaxi162Scf00257g00217' => 'pax', 'Peaxi162Scf00516g00215' => 'pax', 'Peaxi162Scf00689g00123' => 'pax', 'PGR044G2719' => 'pgr', 'PGR083G1360' => 'pgr', 'PGR102G2849' => 'pgr', 'PGR119G2534' => 'pgr', 'PGSC0003DMG400003538' => 'stu', 'PGSC0003DMG400028138' => 'stu', 'PGSC0003DMG400031732' => 'stu', 'PGSC0003DMG400038165' => 'stu', 'Phvul.002G284600' => 'pvu', 'Phvul.003G258200' => 'pvu', 'Phvul.009G176500' => 'pvu', 'Potri.003G167201' => 'ptr', 'Potri.005G118400' => 'ptr', 'Potri.012G089000' => 'ptr', 'Potri.012G102800' => 'ptr', 'Potri.015G079400' => 'ptr', 'Potri.015G100900' => 'ptr', 'Pp3c14_9810' => 'ppa', 'Pp3c15_10450' => 'ppa', 'Pp3c20_19150' => 'ppa', 'Pp3c23_12740' => 'ppa', 'Pp3c23_6310' => 'ppa', 'Pp3c24_3720' => 'ppa', 'Pp3c27_2580' => 'ppa', 'Pp3c9_8990' => 'ppa', 'PRCOL_00002854' => 'pco', 'Prupe.1G221200' => 'ppe', 'Prupe.3G289000' => 'ppe', 'Prupe.5G147000' => 'ppe', 'Prupe.6G157300' => 'ppe', 'Prupe.7G163400' => 'ppe', 'Psat0s2177g0040' => 'psa', 'Psat3g174760' => 'psa', 'Psat3g192160' => 'psa', 'Psat4g058520' => 'psa', 'Psat4g096840' => 'psa', 'Psat7g037320' => 'psa', 'PSO017G1274' => 'pso', 'PSO017G5166' => 'pso', 'PSO063G4558' => 'pso', 'PSO170G4458' => 'pso', 'PSO170G5005' => 'pso', 'PSO210G6156' => 'pso', 'PSO210G6635' => 'pso', 'PSO210G7397' => 'pso', 'PSO210G7700' => 'pso', 'PSO455G0035' => 'pso', 'PSO455G0180' => 'pso', 'PSO478G4515' => 'pso', 'PSO832G1305' => 'pso', 'PSO832G3489' => 'pso', 'QL02p075247' => 'qlo', 'QL03p051148' => 'qlo', 'QL05p010313' => 'qlo', 'QL06p034627' => 'qlo', 'QL10p001889' => 'qlo', 'QL10p010846' => 'qlo', 'RcHm_v2.0_Chr1g0350621' => 'rch', 'RcHm_v2.0_Chr1g0350641' => 'rch', 'RcHm_v2.0_Chr2g0092891' => 'rch', 'RcHm_v2.0_Chr2g0100251' => 'rch', 'RcHm_v2.0_Chr2g0158661' => 'rch', 'RcHm_v2.0_Chr2g0172741' => 'rch', 'RcHm_v2.0_Chr4g0429571' => 'rch', 'RcHm_v2.0_Chr5g0042471' => 'rch', 'RcHm_v2.0_Chr7g0189451' => 'rch', 'Rhsim08G0052000' => 'rsi', 'Rhsim08G0174400' => 'rsi', 'Rhsim08G0193200' => 'rsi', 'Rhsim10G0214800' => 'rsi', 'Rhsim10G0214900' => 'rsi', 'Rhsim10G0215000' => 'rsi', 'Rhsim12G0022900' => 'rsi', 'Rhsim12G0177500' => 'rsi', 'Rhsim12G0177700' => 'rsi', 'Sabra03G0122600' => 'sbr', 'Sabra05G0097400' => 'sbr', 'Sabra12G0064100' => 'sbr', 'Sabra15G0121300' => 'sbr', 'SalBow2G0642' => 'sbo', 'SalBow5G2667' => 'sbo', 'SalBow5G4873' => 'sbo', 'SalBow8G2395' => 'sbo', 'Sc03g0003290' => 'sci', 'Sc10g0010130' => 'sci', 'Sc22g0003650' => 'sci', 'Sed0001603' => 'sed', 'Sed0004259' => 'sed', 'Sed0006789' => 'sed', 'Sed0011838' => 'sed', 'Sed0012964' => 'sed', 'Sed0016383' => 'sed', 'Sed0019010' => 'sed', 'Sed0020188' => 'sed', 'SEGI_04702' => 'sgi', 'SEGI_17231' => 'sgi', 'SEGI_18877' => 'sgi', 'SEGI_25196' => 'sgi', 'SEGI_25515' => 'sgi', 'SEGI_28445' => 'sgi', 'SEGI_37452' => 'sgi', 'SGA_v2.0_scaffold188G40336' => 'sas', 'SGA_v2.0_scaffold228G43247' => 'sas', 'SGA_v2.0_scaffold280G46853' => 'sas', 'SGA_v2.0_scaffold34G13808' => 'sas', 'SGA_v2.0_scaffold40G15576' => 'sas', 'SGA_v2.0_scaffold611G53188' => 'sas', 'SGA_v2.0_scaffold78G25461' => 'sas', 'SGA_v2.0_scaffold90G27888' => 'sas', 'SHI08601' => 'shi', 'SHI08606' => 'shi', 'SHI17117' => 'shi', 'SHI17119' => 'shi', 'SMO118G0201' => 'smo', 'SMO169G0247' => 'smo', 'SMO176G0006' => 'smo', 'SMO176G0015' => 'smo', 'SMO202G0006' => 'smo', 'SMO240G0050' => 'smo', 'SMO286G0009' => 'smo', 'SMO338G0033' => 'smo', 'SMO356G0533' => 'smo', 'SMO364G0382' => 'smo', 'SMO367G0166' => 'smo', 'SMO367G1098' => 'smo', 'Solyc01g009920.3' => 'sly', 'Solyc01g099300.3' => 'sly', 'Solyc02g084700.3' => 'sly', 'Solyc03g097520.3' => 'sly', 'Solyc06g071580.3' => 'sly', 'Solyc10g081760.3' => 'sly', 'Sopen01g005480' => 'spe', 'Sopen01g042850' => 'spe', 'Sopen02g029370' => 'spe', 'Sopen03g028280' => 'spe', 'Sopen06g027870' => 'spe', 'Sopen10g032270' => 'spe', 'Sp5g18180' => 'spa', 'Sp6g12880' => 'spa', 'Sp6g30850' => 'spa', 'Sp7g22960' => 'spa', 'Sp7g34010' => 'spa', 'SpUn1326_0010' => 'spa', 'TAR371G0242' => 'tar', 'TAR622G0638' => 'tar', 'TAR628G1548' => 'tar', 'TAR629G1079' => 'tar', 'TAR629G3413' => 'tar', 'THA.LOC104804249' => 'tha', 'THA.LOC104808315' => 'tha', 'THA.LOC104809238' => 'tha', 'THA.LOC104825484' => 'tha', 'Thecc.01G025500' => 'tca', 'Thecc.03G015800' => 'tca', 'Thecc.03G018000' => 'tca', 'Thecc.03G134800' => 'tca', 'Thecc.04G014700' => 'tca', 'Thhalv10006991m.g' => 'esa', 'Thhalv10012707m.g' => 'esa', 'Thhalv10015739m.g' => 'esa', 'Thhalv10024553m.g' => 'esa', 'Thhalv10024673m.g' => 'esa', 'Thhalv10029187m.g' => 'esa', 'TPR.G12971' => 'tpr', 'TPR.G29396' => 'tpr', 'TPR.G33376' => 'tpr', 'TPR.G35508' => 'tpr', 'TPR.G35516' => 'tpr', 'TPR.G37317' => 'tpr', 'TPR.G37389' => 'tpr', 'TPR.G37523' => 'tpr', 'TPR.G559' => 'tpr', 'TWI14G0070' => 'twi', 'TWI14G0729' => 'twi', 'TWI18G0596' => 'twi', 'TWI39G0780' => 'twi', 'TWI39G0850' => 'twi', 'TWI73G1052' => 'twi', 'unitig_52.g17485' => 'ugi', 'unitig_61.g26355' => 'ugi', 'vmacro01040' => 'vma', 'vmacro16731' => 'vma', 'vmacro18270' => 'vma', 'vmacro19142' => 'vma', 'vmacro19407' => 'vma', 'vmacro19408' => 'vma', 'vmacro21899' => 'vma', 'vmacro21900' => 'vma', 'vmacro21901' => 'vma', 'VMungo0251G0490' => 'vmu', 'VMungo0251G1748' => 'vmu', 'VMungo1309G0421' => 'vmu', 'Zm00001eb086500' => 'zma', 'Zm00001eb150680' => 'zma', 'Zm00001eb162330' => 'zma', 'Zm00001eb203130' => 'zma', 'Zm00001eb369480' => 'zma', 'Zm00001eb382340' => 'zma', 'Zm00001eb416360' => 'zma' ), 'gf_id' => 'HOM05D000902', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000902' ), 'data_identifier' => 'HOM05D000902', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000902', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '663', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02470' => 'bna', 'A01p16260' => 'bna', 'A02p01680' => 'bna', 'A03p16600' => 'bna', 'A03p55660' => 'bna', 'A03p64160' => 'bna', 'A03p64170' => 'bna', 'A08p31900' => 'bna', 'A09p59530' => 'bna', 'A10p08230' => 'bna', 'A10p25090' => 'bna', 'Aa31LG3G7100' => 'aar', 'Aa31LG3G7110' => 'aar', 'Aa31LG6G13160' => 'aar', 'Aa31LG7G10770' => 'aar', 'Aa31LG7G3830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2723' => 'aag', 'Actinidia08045' => 'ach', 'Actinidia08888' => 'ach', 'Actinidia18333' => 'ach', 'Actinidia19334' => 'ach', 'Actinidia25552' => 'ach', 'Actinidia26089' => 'ach', 'Actinidia30615' => 'ach', 'Actinidia30616' => 'ach', 'Actinidia33083' => 'ach', 'Actinidia35762' => 'ach', 'Ah.02g110620' => 'amhyb', 'Ah.11g046390' => 'amhyb', 'AL1G31670' => 'aly', 'AL6G23730' => 'aly', 'AL7G14740' => 'aly', 'AL7G14750' => 'aly', 'AL7G14760' => 'aly', 'AL7G28220' => 'aly', 'AL8G24940' => 'aly', 'Aqoxy3G01665' => 'aox', 'Aqoxy3G02853' => 'aox', 'Aqoxy5G01513' => 'aox', 'Aqoxy5G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8SKA4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ75LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKDA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0LJZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7REX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZP4YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWX7I5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2QKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS0L9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPCD8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q161UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC7XCF' => 'arhy', 'AT1G19100' => 'ath', 'AT4G24970' => 'ath', 'AT4G36270' => 'ath', 'AT4G36280' => 'ath', 'AT4G36290' => 'ath', 'AT5G13130' => 'ath', 'AT5G50780' => 'ath', 'ATR0582G266' => 'atr', 'ATR0661G195' => 'atr', 'ATR1152G031' => 'atr', 'Atru.chr11.2382' => 'acertr', 'Atru.chr12.2337' => 'acertr', 'Atru.chr3.744' => 'acertr', 'Atru.chr6.1870' => 'acertr', 'Atru.chr9.2515' => 'acertr', 'AUR62004120' => 'cqu', 'AUR62005667' => 'cqu', 'AUR62007634' => 'cqu', 'AUR62008186' => 'cqu', 'AUR62008187' => 'cqu', 'AUR62008188' => 'cqu', 'AUR62027954' => 'cqu', 'AUR62028766' => 'cqu', 'AUR62028767' => 'cqu', 'AUR62028768' => 'cqu', 'AUR62028886' => 'cqu', 'AUR62029563' => 'cqu', 'AUR62038832' => 'cqu', 'BcaB01g04149' => 'bca', 'BcaB03g12940' => 'bca', 'BcaB03g13090' => 'bca', 'BcaB03g14466' => 'bca', 'BcaB05g24035' => 'bca', 'BcaC01g06050' => 'bca', 'BcaC04g19148' => 'bca', 'BcaC04g20761' => 'bca', 'BcaC06g32845' => 'bca', 'BcaC07g41274' => 'bca', 'BcaC09g50827' => 'bca', 'BcaNung00741' => 'bca', 'BcaNung00742' => 'bca', 'BcaNung01859' => 'bca', 'BcaNung03985' => 'bca', 'BcaNung03989' => 'bca', 'BcaNung05661' => 'bca', 'BolC1t00257H' => 'bol', 'BolC1t01956H' => 'bol', 'BolC2t06534H' => 'bol', 'BolC3t14334H' => 'bol', 'BolC5t30451H' => 'bol', 'BolC7t45880H' => 'bol', 'BolC7t46586H' => 'bol', 'BolC8t49301H' => 'bol', 'BolC8t51837H' => 'bol', 'BolC9t56822H' => 'bol', 'BolC9t59235H' => 'bol', 'BraA01t00234Z' => 'bra', 'BraA01t01563Z' => 'bra', 'BraA02t05147Z' => 'bra', 'BraA03t10947Z' => 'bra', 'BraA03t14633Z' => 'bra', 'BraA08t35112Z' => 'bra', 'BraA09t41330Z' => 'bra', 'BraA10t44570Z' => 'bra', 'C01p02670' => 'bna', 'C01p20260' => 'bna', 'C02p05890' => 'bna', 'C03p19530' => 'bna', 'C05p17470' => 'bna', 'C07p53900' => 'bna', 'C07p61630' => 'bna', 'C08p16800' => 'bna', 'C08p42810' => 'bna', 'C09p39480' => 'bna', 'C09p63980' => 'bna', 'CAN.G1001.7' => 'can', 'CAN.G1034.55' => 'can', 'CAN.G143.7' => 'can', 'CAN.G3340.1' => 'can', 'CAN.G358.19' => 'can', 'CAN.G373.2' => 'can', 'CAN.G674.16' => 'can', 'CAN.G674.17' => 'can', 'CAN.G674.18' => 'can', 'CAN.G732.2' => 'can', 'CAN.G732.3' => 'can', 'CAN.G993.39' => 'can', 'CANSAT01G2052' => 'cansat', 'CANSAT80G0070' => 'cansat', 'CANSAT80G0483' => 'cansat', 'CANSAT80G0625' => 'cansat', 'CARHR019690' => 'chi', 'CARHR080280' => 'chi', 'CARHR152750' => 'chi', 'CARHR152760' => 'chi', 'CARHR152770' => 'chi', 'CARHR200340' => 'chi', 'CARHR232370' => 'chi', 'CARHR244670' => 'chi', 'CARHR244680' => 'chi', 'CARHR257520' => 'chi', 'Carub.0001s1872' => 'cru', 'Carub.0006s1130' => 'cru', 'Carub.0007s0396' => 'cru', 'Carub.0007s0397' => 'cru', 'Carub.0007s1608' => 'cru', 'Carub.0008s1068' => 'cru', 'Carub.0008s1077' => 'cru', 'Ca_16158_v3' => 'car', 'Ca_17571_v3' => 'car', 'Ca_21936_v3' => 'car', 'Ca_22350_v3' => 'car', 'CBR_g22445' => 'cbr', 'CBR_g26290' => 'cbr', 'Cc04_g09610' => 'ccan', 'Cc04_g12280' => 'ccan', 'Cc07_g10230' => 'ccan', 'CDE02G0093' => 'cde', 'CDE02G0701' => 'cde', 'CDE04G1050' => 'cde', 'CDE05G1833' => 'cde', 'CDE05G3058' => 'cde', 'CDE05G3380' => 'cde', 'CDE06G0536' => 'cde', 'Cfa006923' => 'cfa', 'Cfa009402' => 'cfa', 'Cfa018751' => 'cfa', 'Cfa019164' => 'cfa', 'Cfa022935' => 'cfa', 'Ciclev10019081m.g' => 'ccl', 'Ciclev10025076m.g' => 'ccl', 'Ciclev10030712m.g' => 'ccl', 'Ciclev10033760m.g' => 'ccl', 'CiPaw.05G105600' => 'cil', 'CiPaw.08G136700' => 'cil', 'CiPaw.11G003900' => 'cil', 'CiPaw.11G023700' => 'cil', 'CiPaw.12G003700' => 'cil', 'ClCG06G017100' => 'cla', 'ClCG06G018110' => 'cla', 'ClCG07G008800' => 'cla', 'ClCG07G015330' => 'cla', 'COL.COLO4_13698' => 'col', 'COL.COLO4_16659' => 'col', 'COL.COLO4_21986' => 'col', 'COL.COLO4_24049' => 'col', 'COL.COLO4_29061' => 'col', 'COL.COLO4_29075' => 'col', 'COL.COLO4_30094' => 'col', 'Cpa.g.c33689' => 'cpa', 'Cpa.g.sc108.39' => 'cpa', 'Cpa.g.sc108.41' => 'cpa', 'Cpa.g.sc1163.1' => 'cpa', 'Cpa.g.sc4.155' => 'cpa', 'Cpa.g.sc6.194' => 'cpa', 'CsaV3_1G000340' => 'csa', 'CsaV3_1G001400' => 'csa', 'CsaV3_4G002220' => 'csa', 'CsaV3_4G005370' => 'csa', 'CSS0007487' => 'camsi', 'CSS0008066' => 'camsi', 'CSS0009120' => 'camsi', 'CSS0015512' => 'camsi', 'CSS0022409' => 'camsi', 'CSS0025358' => 'camsi', 'CSS0044547' => 'camsi', 'DCAR_013057' => 'dca', 'DCAR_015058' => 'dca', 'DCAR_016027' => 'dca', 'DCAR_017327' => 'dca', 'DCAR_020743' => 'dca', 'DCAR_026157' => 'dca', 'DCAR_032339' => 'dca', 'DCAR_032340' => 'dca', 'Dinv11200' => 'din', 'Dinv11201' => 'din', 'Dinv20631' => 'din', 'Dinv23182' => 'din', 'Dinv33466' => 'din', 'Dinv33583' => 'din', 'Dinv38565' => 'din', 'Duzib068G0200' => 'dzi', 'Duzib147G0132' => 'dzi', 'Duzib147G0635' => 'dzi', 'Duzib205G1670' => 'dzi', 'Duzib251G0606' => 'dzi', 'ECA232G3336' => 'eca', 'ECA232G3763' => 'eca', 'ECA232G4845' => 'eca', 'ECA234G1607' => 'eca', 'ECA246G0932' => 'eca', 'ECA247G0781' => 'eca', 'ECA247G1932' => 'eca', 'ECA247G2079' => 'eca', 'ECA247G3338' => 'eca', 'ECA247G4115' => 'eca', 'EL10Ac3g06552' => 'bvu', 'EL10Ac5g10721' => 'bvu', 'EL10Ac5g10722' => 'bvu', 'EL10Ac5g10723' => 'bvu', 'EL10Ac5g11361' => 'bvu', 'EL10Ac6g13553' => 'bvu', 'EL10As8g23872' => 'bvu', 'Eucgr.B00250' => 'egr', 'Eucgr.B00251' => 'egr', 'Eucgr.B03533' => 'egr', 'Eucgr.I02381' => 'egr', 'Eucgr.K02700' => 'egr', 'FAN02G0174' => 'fan', 'FAN02G3146' => 'fan', 'FAN04G1672' => 'fan', 'FAN04G2273' => 'fan', 'FAN05G2791' => 'fan', 'FAN05G4035' => 'fan', 'FAN07G0834' => 'fan', 'FAN08G1198' => 'fan', 'FAN09G4182' => 'fan', 'FAN12G0496' => 'fan', 'FAN13G1027' => 'fan', 'FAN13G2951' => 'fan', 'FAN14G0705' => 'fan', 'FAN14G0720' => 'fan', 'FAN17G0201' => 'fan', 'FAN17G2665' => 'fan', 'FAN18G1456' => 'fan', 'FAN18G1525' => 'fan', 'FAN18G3500' => 'fan', 'FAN28G2670' => 'fan', 'FvH4_1g12391' => 'fve', 'FvH4_4g23220' => 'fve', 'FvH4_5g08810' => 'fve', 'FvH4_5g28960' => 'fve', 'FvH4_6g42820' => 'fve', 'FvH4_6g51110' => 'fve', 'Glyma.02G051802' => 'gma', 'Glyma.04G185300' => 'gma', 'Glyma.05G202900' => 'gma', 'Glyma.08G010300' => 'gma', 'Glyma.16G131900' => 'gma', 'Glyma.17G087900' => 'gma', 'Gohir.A07G048600' => 'ghi', 'Gohir.A11G179000' => 'ghi', 'Gohir.A12G140900' => 'ghi', 'Gohir.A12G140950' => 'ghi', 'Gohir.A12G191700' => 'ghi', 'Gohir.A13G086300' => 'ghi', 'Gohir.D07G052900' => 'ghi', 'Gohir.D11G186600' => 'ghi', 'Gohir.D12G145575' => 'ghi', 'Gohir.D12G145650' => 'ghi', 'Gohir.D12G145725' => 'ghi', 'Gohir.D12G194050' => 'ghi', 'Gohir.D13G091800' => 'ghi', 'Gorai.001G055900' => 'gra', 'Gorai.007G198400' => 'gra', 'Gorai.008G157000' => 'gra', 'Gorai.008G157100' => 'gra', 'Gorai.008G208700' => 'gra', 'Gorai.010G138700' => 'gra', 'GSVIVG01000977001' => 'vvi', 'GSVIVG01007708001' => 'vvi', 'GSVIVG01008587001' => 'vvi', 'GSVIVG01018849001' => 'vvi', 'GSVIVG01032432001' => 'vvi', 'HanXRQChr02g0034131' => 'han', 'HanXRQChr02g0035981' => 'han', 'HanXRQChr02g0035991' => 'han', 'HanXRQChr05g0155611' => 'han', 'HanXRQChr05g0155621' => 'han', 'HanXRQChr08g0236501' => 'han', 'HanXRQChr09g0261321' => 'han', 'HanXRQChr09g0272081' => 'han', 'HanXRQChr10g0310741' => 'han', 'HanXRQChr11g0325591' => 'han', 'HanXRQChr12g0385691' => 'han', 'HanXRQChr13g0387801' => 'han', 'HanXRQChr15g0463011' => 'han', 'Haze_03826' => 'cav', 'Haze_03827' => 'cav', 'Haze_07183' => 'cav', 'Haze_07537' => 'cav', 'Haze_07539' => 'cav', 'Haze_12461' => 'cav', 'Haze_16115' => 'cav', 'Haze_16808' => 'cav', 'Haze_18531' => 'cav', 'Hma1.2p1_0046F.1_g026700' => 'hma', 'Hma1.2p1_0046F.1_g026710' => 'hma', 'Hma1.2p1_0168F.1_g074340' => 'hma', 'Hma1.2p1_0266F.1_g107030' => 'hma', 'Hma1.2p1_0266F.1_g107060' => 'hma', 'Hma1.2p1_0275F.1_g110510' => 'hma', 'Hma1.2p1_0592F.1_g185490' => 'hma', 'Hma1.2p1_0592F.1_g185500' => 'hma', 'Hma1.2p1_0592F.1_g185510' => 'hma', 'Hma1.2p1_0592F.1_g185520' => 'hma', 'Hma1.2p1_0592F.1_g185530' => 'hma', 'Hma1.2p1_0818F.1_g223450' => 'hma', 'HPP92_009708' => 'vpl', 'HPP92_009793' => 'vpl', 'HPP92_009796' => 'vpl', 'HPP92_009797' => 'vpl', 'HPP92_014940' => 'vpl', 'HPP92_014988' => 'vpl', 'Hund02463' => 'sun', 'Hund02760' => 'sun', 'Hund05071' => 'sun', 'Hund10108' => 'sun', 'Hund11204' => 'sun', 'Hund14016' => 'sun', 'Hund16464' => 'sun', 'Lalb_Chr09g0333391' => 'lal', 'Lalb_Chr11g0070461' => 'lal', 'Lalb_Chr12g0201671' => 'lal', 'Lalb_Chr13g0297161' => 'lal', 'Lj1g0002823' => 'lja', 'Lj3C1074T6' => 'lonja', 'Lj4A212T28' => 'lonja', 'Lj4g0005516' => 'lja', 'Lj4g0013705' => 'lja', 'Lj4g0027865' => 'lja', 'Lj5C92G16' => 'lonja', 'Lj5C92T12' => 'lonja', 'Lj7C596T3' => 'lonja', 'Lj9A446G59' => 'lonja', 'Lj9A482G21' => 'lonja', 'Lsat_1_v5_gn_1_28261' => 'lsa', 'Lsat_1_v5_gn_1_28281' => 'lsa', 'Lsat_1_v5_gn_1_32721' => 'lsa', 'Lsat_1_v5_gn_4_151760' => 'lsa', 'Lsat_1_v5_gn_4_2120' => 'lsa', 'Lsat_1_v5_gn_4_75761' => 'lsa', 'Lsat_1_v5_gn_5_10920' => 'lsa', 'Manes.02G099900' => 'mes', 'Manes.11G096200' => 'mes', 'Manes.12G007200' => 'mes', 'Manes.14G048300' => 'mes', 'Manes.17G114700' => 'mes', 'Mapoly0002s0070' => 'mpo', 'Mapoly0029s0099' => 'mpo', 'MBI07_g24742_MAGBIO' => 'mbi', 'MBI10_g27988_MAGBIO' => 'mbi', 'MBI11_g13057_MAGBIO' => 'mbi', 'MD02G1137200' => 'mdo', 'MD06G1137200' => 'mdo', 'MD07G1122300' => 'mdo', 'MD09G1078200' => 'mdo', 'MD13G1123700' => 'mdo', 'MD14G1151900' => 'mdo', 'MD17G1030900' => 'mdo', 'MD17G1068200' => 'mdo', 'MD17G1068600' => 'mdo', 'Medtr3g077540' => 'mtr', 'Medtr4g105530' => 'mtr', 'Medtr8g076580' => 'mtr', 'Medtr8g076590' => 'mtr', 'Medtr8g096410' => 'mtr', 'MELO3C016411.2' => 'cme', 'MELO3C017780.2' => 'cme', 'MELO3C022560.2' => 'cme', 'MELO3C026187.2' => 'cme', 'MELO3C026286.2' => 'cme', 'MELO3C032854.2' => 'cme', 'Migut.H02495' => 'egut', 'Migut.I00561' => 'egut', 'Migut.K01015' => 'egut', 'Migut.K01016' => 'egut', 'Migut.L00743' => 'egut', 'Migut.L00744' => 'egut', 'Migut.L00746' => 'egut', 'Migut.L00798' => 'egut', 'Migut.L00799' => 'egut', 'Migut.N02096' => 'egut', 'MSTRG.11259' => 'ama', 'MSTRG.23142' => 'ama', 'MSTRG.2499' => 'ama', 'Nitab4.5_0000003g0730' => 'nta', 'Nitab4.5_0000137g0020' => 'nta', 'Nitab4.5_0000721g0210' => 'nta', 'Nitab4.5_0000723g0050' => 'nta', 'Nitab4.5_0000913g0070' => 'nta', 'Nitab4.5_0001332g0040' => 'nta', 'Nitab4.5_0001771g0050' => 'nta', 'Nitab4.5_0001918g0050' => 'nta', 'Nitab4.5_0002686g0030' => 'nta', 'Nitab4.5_0003156g0020' => 'nta', 'Nitab4.5_0003383g0040' => 'nta', 'Nitab4.5_0003918g0010' => 'nta', 'Nitab4.5_0006760g0010' => 'nta', 'Nn1g05981' => 'nnu', 'Nn1g06288' => 'nnu', 'Nn3g16371' => 'nnu', 'Nn3g16786' => 'nnu', 'Nn4g22232' => 'nnu', 'Oeu005144.1' => 'oeu', 'Oeu005145.1' => 'oeu', 'Oeu011348.1' => 'oeu', 'Oeu016415.1' => 'oeu', 'Oeu023501.1' => 'oeu', 'Oeu044473.1' => 'oeu', 'Oeu048892.2' => 'oeu', 'Os01g0549200' => 'osa', 'Os02g0469300' => 'osa', 'Os04g0311100' => 'osa', 'Os06g0474900' => 'osa', 'Os10g0181700' => 'osa', 'Os11g0454800' => 'osa', 'Peaxi162Scf00037g00714' => 'pax', 'Peaxi162Scf00084g01217' => 'pax', 'Peaxi162Scf00257g00217' => 'pax', 'Peaxi162Scf00516g00215' => 'pax', 'Peaxi162Scf00689g00123' => 'pax', 'PGR044G2719' => 'pgr', 'PGR083G1360' => 'pgr', 'PGR102G2849' => 'pgr', 'PGR119G2534' => 'pgr', 'PGSC0003DMG400003538' => 'stu', 'PGSC0003DMG400028138' => 'stu', 'PGSC0003DMG400031732' => 'stu', 'PGSC0003DMG400038165' => 'stu', 'Phvul.002G284600' => 'pvu', 'Phvul.003G258200' => 'pvu', 'Phvul.009G176500' => 'pvu', 'Potri.003G167201' => 'ptr', 'Potri.005G118400' => 'ptr', 'Potri.012G089000' => 'ptr', 'Potri.012G102800' => 'ptr', 'Potri.015G079400' => 'ptr', 'Potri.015G100900' => 'ptr', 'Pp3c14_9810' => 'ppa', 'Pp3c15_10450' => 'ppa', 'Pp3c20_19150' => 'ppa', 'Pp3c23_12740' => 'ppa', 'Pp3c23_6310' => 'ppa', 'Pp3c24_3720' => 'ppa', 'Pp3c27_2580' => 'ppa', 'Pp3c9_8990' => 'ppa', 'PRCOL_00002854' => 'pco', 'Prupe.1G221200' => 'ppe', 'Prupe.3G289000' => 'ppe', 'Prupe.5G147000' => 'ppe', 'Prupe.6G157300' => 'ppe', 'Prupe.7G163400' => 'ppe', 'Psat0s2177g0040' => 'psa', 'Psat3g174760' => 'psa', 'Psat3g192160' => 'psa', 'Psat4g058520' => 'psa', 'Psat4g096840' => 'psa', 'Psat7g037320' => 'psa', 'PSO017G1274' => 'pso', 'PSO017G5166' => 'pso', 'PSO063G4558' => 'pso', 'PSO170G4458' => 'pso', 'PSO170G5005' => 'pso', 'PSO210G6156' => 'pso', 'PSO210G6635' => 'pso', 'PSO210G7397' => 'pso', 'PSO210G7700' => 'pso', 'PSO455G0035' => 'pso', 'PSO455G0180' => 'pso', 'PSO478G4515' => 'pso', 'PSO832G1305' => 'pso', 'PSO832G3489' => 'pso', 'QL02p075247' => 'qlo', 'QL03p051148' => 'qlo', 'QL05p010313' => 'qlo', 'QL06p034627' => 'qlo', 'QL10p001889' => 'qlo', 'QL10p010846' => 'qlo', 'RcHm_v2.0_Chr1g0350621' => 'rch', 'RcHm_v2.0_Chr1g0350641' => 'rch', 'RcHm_v2.0_Chr2g0092891' => 'rch', 'RcHm_v2.0_Chr2g0100251' => 'rch', 'RcHm_v2.0_Chr2g0158661' => 'rch', 'RcHm_v2.0_Chr2g0172741' => 'rch', 'RcHm_v2.0_Chr4g0429571' => 'rch', 'RcHm_v2.0_Chr5g0042471' => 'rch', 'RcHm_v2.0_Chr7g0189451' => 'rch', 'Rhsim08G0052000' => 'rsi', 'Rhsim08G0174400' => 'rsi', 'Rhsim08G0193200' => 'rsi', 'Rhsim10G0214800' => 'rsi', 'Rhsim10G0214900' => 'rsi', 'Rhsim10G0215000' => 'rsi', 'Rhsim12G0022900' => 'rsi', 'Rhsim12G0177500' => 'rsi', 'Rhsim12G0177700' => 'rsi', 'Sabra03G0122600' => 'sbr', 'Sabra05G0097400' => 'sbr', 'Sabra12G0064100' => 'sbr', 'Sabra15G0121300' => 'sbr', 'SalBow2G0642' => 'sbo', 'SalBow5G2667' => 'sbo', 'SalBow5G4873' => 'sbo', 'SalBow8G2395' => 'sbo', 'Sc03g0003290' => 'sci', 'Sc10g0010130' => 'sci', 'Sc22g0003650' => 'sci', 'Sed0001603' => 'sed', 'Sed0004259' => 'sed', 'Sed0006789' => 'sed', 'Sed0011838' => 'sed', 'Sed0012964' => 'sed', 'Sed0016383' => 'sed', 'Sed0019010' => 'sed', 'Sed0020188' => 'sed', 'SEGI_04702' => 'sgi', 'SEGI_17231' => 'sgi', 'SEGI_18877' => 'sgi', 'SEGI_25196' => 'sgi', 'SEGI_25515' => 'sgi', 'SEGI_28445' => 'sgi', 'SEGI_37452' => 'sgi', 'SGA_v2.0_scaffold188G40336' => 'sas', 'SGA_v2.0_scaffold228G43247' => 'sas', 'SGA_v2.0_scaffold280G46853' => 'sas', 'SGA_v2.0_scaffold34G13808' => 'sas', 'SGA_v2.0_scaffold40G15576' => 'sas', 'SGA_v2.0_scaffold611G53188' => 'sas', 'SGA_v2.0_scaffold78G25461' => 'sas', 'SGA_v2.0_scaffold90G27888' => 'sas', 'SHI08601' => 'shi', 'SHI08606' => 'shi', 'SHI17117' => 'shi', 'SHI17119' => 'shi', 'SMO118G0201' => 'smo', 'SMO169G0247' => 'smo', 'SMO176G0006' => 'smo', 'SMO176G0015' => 'smo', 'SMO202G0006' => 'smo', 'SMO240G0050' => 'smo', 'SMO286G0009' => 'smo', 'SMO338G0033' => 'smo', 'SMO356G0533' => 'smo', 'SMO364G0382' => 'smo', 'SMO367G0166' => 'smo', 'SMO367G1098' => 'smo', 'Solyc01g009920.3' => 'sly', 'Solyc01g099300.3' => 'sly', 'Solyc02g084700.3' => 'sly', 'Solyc03g097520.3' => 'sly', 'Solyc06g071580.3' => 'sly', 'Solyc10g081760.3' => 'sly', 'Sopen01g005480' => 'spe', 'Sopen01g042850' => 'spe', 'Sopen02g029370' => 'spe', 'Sopen03g028280' => 'spe', 'Sopen06g027870' => 'spe', 'Sopen10g032270' => 'spe', 'Sp5g18180' => 'spa', 'Sp6g12880' => 'spa', 'Sp6g30850' => 'spa', 'Sp7g22960' => 'spa', 'Sp7g34010' => 'spa', 'SpUn1326_0010' => 'spa', 'TAR371G0242' => 'tar', 'TAR622G0638' => 'tar', 'TAR628G1548' => 'tar', 'TAR629G1079' => 'tar', 'TAR629G3413' => 'tar', 'THA.LOC104804249' => 'tha', 'THA.LOC104808315' => 'tha', 'THA.LOC104809238' => 'tha', 'THA.LOC104825484' => 'tha', 'Thecc.01G025500' => 'tca', 'Thecc.03G015800' => 'tca', 'Thecc.03G018000' => 'tca', 'Thecc.03G134800' => 'tca', 'Thecc.04G014700' => 'tca', 'Thhalv10006991m.g' => 'esa', 'Thhalv10012707m.g' => 'esa', 'Thhalv10015739m.g' => 'esa', 'Thhalv10024553m.g' => 'esa', 'Thhalv10024673m.g' => 'esa', 'Thhalv10029187m.g' => 'esa', 'TPR.G12971' => 'tpr', 'TPR.G29396' => 'tpr', 'TPR.G33376' => 'tpr', 'TPR.G35508' => 'tpr', 'TPR.G35516' => 'tpr', 'TPR.G37317' => 'tpr', 'TPR.G37389' => 'tpr', 'TPR.G37523' => 'tpr', 'TPR.G559' => 'tpr', 'TWI14G0070' => 'twi', 'TWI14G0729' => 'twi', 'TWI18G0596' => 'twi', 'TWI39G0780' => 'twi', 'TWI39G0850' => 'twi', 'TWI73G1052' => 'twi', 'unitig_52.g17485' => 'ugi', 'unitig_61.g26355' => 'ugi', 'vmacro01040' => 'vma', 'vmacro16731' => 'vma', 'vmacro18270' => 'vma', 'vmacro19142' => 'vma', 'vmacro19407' => 'vma', 'vmacro19408' => 'vma', 'vmacro21899' => 'vma', 'vmacro21900' => 'vma', 'vmacro21901' => 'vma', 'VMungo0251G0490' => 'vmu', 'VMungo0251G1748' => 'vmu', 'VMungo1309G0421' => 'vmu', 'Zm00001eb086500' => 'zma', 'Zm00001eb150680' => 'zma', 'Zm00001eb162330' => 'zma', 'Zm00001eb203130' => 'zma', 'Zm00001eb369480' => 'zma', 'Zm00001eb382340' => 'zma', 'Zm00001eb416360' => 'zma' ) $gf_id = 'HOM05D000902' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000902' ) $data_identifier = 'HOM05D000902' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 13, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 10, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 6, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 9, 'hma' => (int) 12, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 4, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 6, 'ppa' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 6, 'rch' => (int) 9, 'rsi' => (int) 9, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 12, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 3, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416360' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000902', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '663', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02470' => 'bna', 'A01p16260' => 'bna', 'A02p01680' => 'bna', 'A03p16600' => 'bna', 'A03p55660' => 'bna', 'A03p64160' => 'bna', 'A03p64170' => 'bna', 'A08p31900' => 'bna', 'A09p59530' => 'bna', 'A10p08230' => 'bna', 'A10p25090' => 'bna', 'Aa31LG3G7100' => 'aar', 'Aa31LG3G7110' => 'aar', 'Aa31LG6G13160' => 'aar', 'Aa31LG7G10770' => 'aar', 'Aa31LG7G3830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2723' => 'aag', 'Actinidia08045' => 'ach', 'Actinidia08888' => 'ach', 'Actinidia18333' => 'ach', 'Actinidia19334' => 'ach', 'Actinidia25552' => 'ach', 'Actinidia26089' => 'ach', 'Actinidia30615' => 'ach', 'Actinidia30616' => 'ach', 'Actinidia33083' => 'ach', 'Actinidia35762' => 'ach', 'Ah.02g110620' => 'amhyb', 'Ah.11g046390' => 'amhyb', 'AL1G31670' => 'aly', 'AL6G23730' => 'aly', 'AL7G14740' => 'aly', 'AL7G14750' => 'aly', 'AL7G14760' => 'aly', 'AL7G28220' => 'aly', 'AL8G24940' => 'aly', 'Aqoxy3G01665' => 'aox', 'Aqoxy3G02853' => 'aox', 'Aqoxy5G01513' => 'aox', 'Aqoxy5G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8SKA4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ75LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKDA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0LJZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7REX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZP4YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWX7I5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2QKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS0L9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPCD8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q161UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC7XCF' => 'arhy', 'AT1G19100' => 'ath', 'AT4G24970' => 'ath', 'AT4G36270' => 'ath', 'AT4G36280' => 'ath', 'AT4G36290' => 'ath', 'AT5G13130' => 'ath', 'AT5G50780' => 'ath', 'ATR0582G266' => 'atr', 'ATR0661G195' => 'atr', 'ATR1152G031' => 'atr', 'Atru.chr11.2382' => 'acertr', 'Atru.chr12.2337' => 'acertr', 'Atru.chr3.744' => 'acertr', 'Atru.chr6.1870' => 'acertr', 'Atru.chr9.2515' => 'acertr', 'AUR62004120' => 'cqu', 'AUR62005667' => 'cqu', 'AUR62007634' => 'cqu', 'AUR62008186' => 'cqu', 'AUR62008187' => 'cqu', 'AUR62008188' => 'cqu', 'AUR62027954' => 'cqu', 'AUR62028766' => 'cqu', 'AUR62028767' => 'cqu', 'AUR62028768' => 'cqu', 'AUR62028886' => 'cqu', 'AUR62029563' => 'cqu', 'AUR62038832' => 'cqu', 'BcaB01g04149' => 'bca', 'BcaB03g12940' => 'bca', 'BcaB03g13090' => 'bca', 'BcaB03g14466' => 'bca', 'BcaB05g24035' => 'bca', 'BcaC01g06050' => 'bca', 'BcaC04g19148' => 'bca', 'BcaC04g20761' => 'bca', 'BcaC06g32845' => 'bca', 'BcaC07g41274' => 'bca', 'BcaC09g50827' => 'bca', 'BcaNung00741' => 'bca', 'BcaNung00742' => 'bca', 'BcaNung01859' => 'bca', 'BcaNung03985' => 'bca', 'BcaNung03989' => 'bca', 'BcaNung05661' => 'bca', 'BolC1t00257H' => 'bol', 'BolC1t01956H' => 'bol', 'BolC2t06534H' => 'bol', 'BolC3t14334H' => 'bol', 'BolC5t30451H' => 'bol', 'BolC7t45880H' => 'bol', 'BolC7t46586H' => 'bol', 'BolC8t49301H' => 'bol', 'BolC8t51837H' => 'bol', 'BolC9t56822H' => 'bol', 'BolC9t59235H' => 'bol', 'BraA01t00234Z' => 'bra', 'BraA01t01563Z' => 'bra', 'BraA02t05147Z' => 'bra', 'BraA03t10947Z' => 'bra', 'BraA03t14633Z' => 'bra', 'BraA08t35112Z' => 'bra', 'BraA09t41330Z' => 'bra', 'BraA10t44570Z' => 'bra', 'C01p02670' => 'bna', 'C01p20260' => 'bna', 'C02p05890' => 'bna', 'C03p19530' => 'bna', 'C05p17470' => 'bna', 'C07p53900' => 'bna', 'C07p61630' => 'bna', 'C08p16800' => 'bna', 'C08p42810' => 'bna', 'C09p39480' => 'bna', 'C09p63980' => 'bna', 'CAN.G1001.7' => 'can', 'CAN.G1034.55' => 'can', 'CAN.G143.7' => 'can', 'CAN.G3340.1' => 'can', 'CAN.G358.19' => 'can', 'CAN.G373.2' => 'can', 'CAN.G674.16' => 'can', 'CAN.G674.17' => 'can', 'CAN.G674.18' => 'can', 'CAN.G732.2' => 'can', 'CAN.G732.3' => 'can', 'CAN.G993.39' => 'can', 'CANSAT01G2052' => 'cansat', 'CANSAT80G0070' => 'cansat', 'CANSAT80G0483' => 'cansat', 'CANSAT80G0625' => 'cansat', 'CARHR019690' => 'chi', 'CARHR080280' => 'chi', 'CARHR152750' => 'chi', 'CARHR152760' => 'chi', 'CARHR152770' => 'chi', 'CARHR200340' => 'chi', 'CARHR232370' => 'chi', 'CARHR244670' => 'chi', 'CARHR244680' => 'chi', 'CARHR257520' => 'chi', 'Carub.0001s1872' => 'cru', 'Carub.0006s1130' => 'cru', 'Carub.0007s0396' => 'cru', 'Carub.0007s0397' => 'cru', 'Carub.0007s1608' => 'cru', 'Carub.0008s1068' => 'cru', 'Carub.0008s1077' => 'cru', 'Ca_16158_v3' => 'car', 'Ca_17571_v3' => 'car', 'Ca_21936_v3' => 'car', 'Ca_22350_v3' => 'car', 'CBR_g22445' => 'cbr', 'CBR_g26290' => 'cbr', 'Cc04_g09610' => 'ccan', 'Cc04_g12280' => 'ccan', 'Cc07_g10230' => 'ccan', 'CDE02G0093' => 'cde', 'CDE02G0701' => 'cde', 'CDE04G1050' => 'cde', 'CDE05G1833' => 'cde', 'CDE05G3058' => 'cde', 'CDE05G3380' => 'cde', 'CDE06G0536' => 'cde', 'Cfa006923' => 'cfa', 'Cfa009402' => 'cfa', 'Cfa018751' => 'cfa', 'Cfa019164' => 'cfa', 'Cfa022935' => 'cfa', 'Ciclev10019081m.g' => 'ccl', 'Ciclev10025076m.g' => 'ccl', 'Ciclev10030712m.g' => 'ccl', 'Ciclev10033760m.g' => 'ccl', 'CiPaw.05G105600' => 'cil', 'CiPaw.08G136700' => 'cil', 'CiPaw.11G003900' => 'cil', 'CiPaw.11G023700' => 'cil', 'CiPaw.12G003700' => 'cil', 'ClCG06G017100' => 'cla', 'ClCG06G018110' => 'cla', 'ClCG07G008800' => 'cla', 'ClCG07G015330' => 'cla', 'COL.COLO4_13698' => 'col', 'COL.COLO4_16659' => 'col', 'COL.COLO4_21986' => 'col', 'COL.COLO4_24049' => 'col', 'COL.COLO4_29061' => 'col', 'COL.COLO4_29075' => 'col', 'COL.COLO4_30094' => 'col', 'Cpa.g.c33689' => 'cpa', 'Cpa.g.sc108.39' => 'cpa', 'Cpa.g.sc108.41' => 'cpa', 'Cpa.g.sc1163.1' => 'cpa', 'Cpa.g.sc4.155' => 'cpa', 'Cpa.g.sc6.194' => 'cpa', 'CsaV3_1G000340' => 'csa', 'CsaV3_1G001400' => 'csa', 'CsaV3_4G002220' => 'csa', 'CsaV3_4G005370' => 'csa', 'CSS0007487' => 'camsi', 'CSS0008066' => 'camsi', 'CSS0009120' => 'camsi', 'CSS0015512' => 'camsi', 'CSS0022409' => 'camsi', 'CSS0025358' => 'camsi', 'CSS0044547' => 'camsi', 'DCAR_013057' => 'dca', 'DCAR_015058' => 'dca', 'DCAR_016027' => 'dca', 'DCAR_017327' => 'dca', 'DCAR_020743' => 'dca', 'DCAR_026157' => 'dca', 'DCAR_032339' => 'dca', 'DCAR_032340' => 'dca', 'Dinv11200' => 'din', 'Dinv11201' => 'din', 'Dinv20631' => 'din', 'Dinv23182' => 'din', 'Dinv33466' => 'din', 'Dinv33583' => 'din', 'Dinv38565' => 'din', 'Duzib068G0200' => 'dzi', 'Duzib147G0132' => 'dzi', 'Duzib147G0635' => 'dzi', 'Duzib205G1670' => 'dzi', 'Duzib251G0606' => 'dzi', 'ECA232G3336' => 'eca', 'ECA232G3763' => 'eca', 'ECA232G4845' => 'eca', 'ECA234G1607' => 'eca', 'ECA246G0932' => 'eca', 'ECA247G0781' => 'eca', 'ECA247G1932' => 'eca', 'ECA247G2079' => 'eca', 'ECA247G3338' => 'eca', 'ECA247G4115' => 'eca', 'EL10Ac3g06552' => 'bvu', 'EL10Ac5g10721' => 'bvu', 'EL10Ac5g10722' => 'bvu', 'EL10Ac5g10723' => 'bvu', 'EL10Ac5g11361' => 'bvu', 'EL10Ac6g13553' => 'bvu', 'EL10As8g23872' => 'bvu', 'Eucgr.B00250' => 'egr', 'Eucgr.B00251' => 'egr', 'Eucgr.B03533' => 'egr', 'Eucgr.I02381' => 'egr', 'Eucgr.K02700' => 'egr', 'FAN02G0174' => 'fan', 'FAN02G3146' => 'fan', 'FAN04G1672' => 'fan', 'FAN04G2273' => 'fan', 'FAN05G2791' => 'fan', 'FAN05G4035' => 'fan', 'FAN07G0834' => 'fan', 'FAN08G1198' => 'fan', 'FAN09G4182' => 'fan', 'FAN12G0496' => 'fan', 'FAN13G1027' => 'fan', 'FAN13G2951' => 'fan', 'FAN14G0705' => 'fan', 'FAN14G0720' => 'fan', 'FAN17G0201' => 'fan', 'FAN17G2665' => 'fan', 'FAN18G1456' => 'fan', 'FAN18G1525' => 'fan', 'FAN18G3500' => 'fan', 'FAN28G2670' => 'fan', 'FvH4_1g12391' => 'fve', 'FvH4_4g23220' => 'fve', 'FvH4_5g08810' => 'fve', 'FvH4_5g28960' => 'fve', 'FvH4_6g42820' => 'fve', 'FvH4_6g51110' => 'fve', 'Glyma.02G051802' => 'gma', 'Glyma.04G185300' => 'gma', 'Glyma.05G202900' => 'gma', 'Glyma.08G010300' => 'gma', 'Glyma.16G131900' => 'gma', 'Glyma.17G087900' => 'gma', 'Gohir.A07G048600' => 'ghi', 'Gohir.A11G179000' => 'ghi', 'Gohir.A12G140900' => 'ghi', 'Gohir.A12G140950' => 'ghi', 'Gohir.A12G191700' => 'ghi', 'Gohir.A13G086300' => 'ghi', 'Gohir.D07G052900' => 'ghi', 'Gohir.D11G186600' => 'ghi', 'Gohir.D12G145575' => 'ghi', 'Gohir.D12G145650' => 'ghi', 'Gohir.D12G145725' => 'ghi', 'Gohir.D12G194050' => 'ghi', 'Gohir.D13G091800' => 'ghi', 'Gorai.001G055900' => 'gra', 'Gorai.007G198400' => 'gra', 'Gorai.008G157000' => 'gra', 'Gorai.008G157100' => 'gra', 'Gorai.008G208700' => 'gra', 'Gorai.010G138700' => 'gra', 'GSVIVG01000977001' => 'vvi', 'GSVIVG01007708001' => 'vvi', 'GSVIVG01008587001' => 'vvi', 'GSVIVG01018849001' => 'vvi', 'GSVIVG01032432001' => 'vvi', 'HanXRQChr02g0034131' => 'han', 'HanXRQChr02g0035981' => 'han', 'HanXRQChr02g0035991' => 'han', 'HanXRQChr05g0155611' => 'han', 'HanXRQChr05g0155621' => 'han', 'HanXRQChr08g0236501' => 'han', 'HanXRQChr09g0261321' => 'han', 'HanXRQChr09g0272081' => 'han', 'HanXRQChr10g0310741' => 'han', 'HanXRQChr11g0325591' => 'han', 'HanXRQChr12g0385691' => 'han', 'HanXRQChr13g0387801' => 'han', 'HanXRQChr15g0463011' => 'han', 'Haze_03826' => 'cav', 'Haze_03827' => 'cav', 'Haze_07183' => 'cav', 'Haze_07537' => 'cav', 'Haze_07539' => 'cav', 'Haze_12461' => 'cav', 'Haze_16115' => 'cav', 'Haze_16808' => 'cav', 'Haze_18531' => 'cav', 'Hma1.2p1_0046F.1_g026700' => 'hma', 'Hma1.2p1_0046F.1_g026710' => 'hma', 'Hma1.2p1_0168F.1_g074340' => 'hma', 'Hma1.2p1_0266F.1_g107030' => 'hma', 'Hma1.2p1_0266F.1_g107060' => 'hma', 'Hma1.2p1_0275F.1_g110510' => 'hma', 'Hma1.2p1_0592F.1_g185490' => 'hma', 'Hma1.2p1_0592F.1_g185500' => 'hma', 'Hma1.2p1_0592F.1_g185510' => 'hma', 'Hma1.2p1_0592F.1_g185520' => 'hma', 'Hma1.2p1_0592F.1_g185530' => 'hma', 'Hma1.2p1_0818F.1_g223450' => 'hma', 'HPP92_009708' => 'vpl', 'HPP92_009793' => 'vpl', 'HPP92_009796' => 'vpl', 'HPP92_009797' => 'vpl', 'HPP92_014940' => 'vpl', 'HPP92_014988' => 'vpl', 'Hund02463' => 'sun', 'Hund02760' => 'sun', 'Hund05071' => 'sun', 'Hund10108' => 'sun', 'Hund11204' => 'sun', 'Hund14016' => 'sun', 'Hund16464' => 'sun', 'Lalb_Chr09g0333391' => 'lal', 'Lalb_Chr11g0070461' => 'lal', 'Lalb_Chr12g0201671' => 'lal', 'Lalb_Chr13g0297161' => 'lal', 'Lj1g0002823' => 'lja', 'Lj3C1074T6' => 'lonja', 'Lj4A212T28' => 'lonja', 'Lj4g0005516' => 'lja', 'Lj4g0013705' => 'lja', 'Lj4g0027865' => 'lja', 'Lj5C92G16' => 'lonja', 'Lj5C92T12' => 'lonja', 'Lj7C596T3' => 'lonja', 'Lj9A446G59' => 'lonja', 'Lj9A482G21' => 'lonja', 'Lsat_1_v5_gn_1_28261' => 'lsa', 'Lsat_1_v5_gn_1_28281' => 'lsa', 'Lsat_1_v5_gn_1_32721' => 'lsa', 'Lsat_1_v5_gn_4_151760' => 'lsa', 'Lsat_1_v5_gn_4_2120' => 'lsa', 'Lsat_1_v5_gn_4_75761' => 'lsa', 'Lsat_1_v5_gn_5_10920' => 'lsa', 'Manes.02G099900' => 'mes', 'Manes.11G096200' => 'mes', 'Manes.12G007200' => 'mes', 'Manes.14G048300' => 'mes', 'Manes.17G114700' => 'mes', 'Mapoly0002s0070' => 'mpo', 'Mapoly0029s0099' => 'mpo', 'MBI07_g24742_MAGBIO' => 'mbi', 'MBI10_g27988_MAGBIO' => 'mbi', 'MBI11_g13057_MAGBIO' => 'mbi', 'MD02G1137200' => 'mdo', 'MD06G1137200' => 'mdo', 'MD07G1122300' => 'mdo', 'MD09G1078200' => 'mdo', 'MD13G1123700' => 'mdo', 'MD14G1151900' => 'mdo', 'MD17G1030900' => 'mdo', 'MD17G1068200' => 'mdo', 'MD17G1068600' => 'mdo', 'Medtr3g077540' => 'mtr', 'Medtr4g105530' => 'mtr', 'Medtr8g076580' => 'mtr', 'Medtr8g076590' => 'mtr', 'Medtr8g096410' => 'mtr', 'MELO3C016411.2' => 'cme', 'MELO3C017780.2' => 'cme', 'MELO3C022560.2' => 'cme', 'MELO3C026187.2' => 'cme', 'MELO3C026286.2' => 'cme', 'MELO3C032854.2' => 'cme', 'Migut.H02495' => 'egut', 'Migut.I00561' => 'egut', 'Migut.K01015' => 'egut', 'Migut.K01016' => 'egut', 'Migut.L00743' => 'egut', 'Migut.L00744' => 'egut', 'Migut.L00746' => 'egut', 'Migut.L00798' => 'egut', 'Migut.L00799' => 'egut', 'Migut.N02096' => 'egut', 'MSTRG.11259' => 'ama', 'MSTRG.23142' => 'ama', 'MSTRG.2499' => 'ama', 'Nitab4.5_0000003g0730' => 'nta', 'Nitab4.5_0000137g0020' => 'nta', 'Nitab4.5_0000721g0210' => 'nta', 'Nitab4.5_0000723g0050' => 'nta', 'Nitab4.5_0000913g0070' => 'nta', 'Nitab4.5_0001332g0040' => 'nta', 'Nitab4.5_0001771g0050' => 'nta', 'Nitab4.5_0001918g0050' => 'nta', 'Nitab4.5_0002686g0030' => 'nta', 'Nitab4.5_0003156g0020' => 'nta', 'Nitab4.5_0003383g0040' => 'nta', 'Nitab4.5_0003918g0010' => 'nta', 'Nitab4.5_0006760g0010' => 'nta', 'Nn1g05981' => 'nnu', 'Nn1g06288' => 'nnu', 'Nn3g16371' => 'nnu', 'Nn3g16786' => 'nnu', 'Nn4g22232' => 'nnu', 'Oeu005144.1' => 'oeu', 'Oeu005145.1' => 'oeu', 'Oeu011348.1' => 'oeu', 'Oeu016415.1' => 'oeu', 'Oeu023501.1' => 'oeu', 'Oeu044473.1' => 'oeu', 'Oeu048892.2' => 'oeu', 'Os01g0549200' => 'osa', 'Os02g0469300' => 'osa', 'Os04g0311100' => 'osa', 'Os06g0474900' => 'osa', 'Os10g0181700' => 'osa', 'Os11g0454800' => 'osa', 'Peaxi162Scf00037g00714' => 'pax', 'Peaxi162Scf00084g01217' => 'pax', 'Peaxi162Scf00257g00217' => 'pax', 'Peaxi162Scf00516g00215' => 'pax', 'Peaxi162Scf00689g00123' => 'pax', 'PGR044G2719' => 'pgr', 'PGR083G1360' => 'pgr', 'PGR102G2849' => 'pgr', 'PGR119G2534' => 'pgr', 'PGSC0003DMG400003538' => 'stu', 'PGSC0003DMG400028138' => 'stu', 'PGSC0003DMG400031732' => 'stu', 'PGSC0003DMG400038165' => 'stu', 'Phvul.002G284600' => 'pvu', 'Phvul.003G258200' => 'pvu', 'Phvul.009G176500' => 'pvu', 'Potri.003G167201' => 'ptr', 'Potri.005G118400' => 'ptr', 'Potri.012G089000' => 'ptr', 'Potri.012G102800' => 'ptr', 'Potri.015G079400' => 'ptr', 'Potri.015G100900' => 'ptr', 'Pp3c14_9810' => 'ppa', 'Pp3c15_10450' => 'ppa', 'Pp3c20_19150' => 'ppa', 'Pp3c23_12740' => 'ppa', 'Pp3c23_6310' => 'ppa', 'Pp3c24_3720' => 'ppa', 'Pp3c27_2580' => 'ppa', 'Pp3c9_8990' => 'ppa', 'PRCOL_00002854' => 'pco', 'Prupe.1G221200' => 'ppe', 'Prupe.3G289000' => 'ppe', 'Prupe.5G147000' => 'ppe', 'Prupe.6G157300' => 'ppe', 'Prupe.7G163400' => 'ppe', 'Psat0s2177g0040' => 'psa', 'Psat3g174760' => 'psa', 'Psat3g192160' => 'psa', 'Psat4g058520' => 'psa', 'Psat4g096840' => 'psa', 'Psat7g037320' => 'psa', 'PSO017G1274' => 'pso', 'PSO017G5166' => 'pso', 'PSO063G4558' => 'pso', 'PSO170G4458' => 'pso', 'PSO170G5005' => 'pso', 'PSO210G6156' => 'pso', 'PSO210G6635' => 'pso', 'PSO210G7397' => 'pso', 'PSO210G7700' => 'pso', 'PSO455G0035' => 'pso', 'PSO455G0180' => 'pso', 'PSO478G4515' => 'pso', 'PSO832G1305' => 'pso', 'PSO832G3489' => 'pso', 'QL02p075247' => 'qlo', 'QL03p051148' => 'qlo', 'QL05p010313' => 'qlo', 'QL06p034627' => 'qlo', 'QL10p001889' => 'qlo', 'QL10p010846' => 'qlo', 'RcHm_v2.0_Chr1g0350621' => 'rch', 'RcHm_v2.0_Chr1g0350641' => 'rch', 'RcHm_v2.0_Chr2g0092891' => 'rch', 'RcHm_v2.0_Chr2g0100251' => 'rch', 'RcHm_v2.0_Chr2g0158661' => 'rch', 'RcHm_v2.0_Chr2g0172741' => 'rch', 'RcHm_v2.0_Chr4g0429571' => 'rch', 'RcHm_v2.0_Chr5g0042471' => 'rch', 'RcHm_v2.0_Chr7g0189451' => 'rch', 'Rhsim08G0052000' => 'rsi', 'Rhsim08G0174400' => 'rsi', 'Rhsim08G0193200' => 'rsi', 'Rhsim10G0214800' => 'rsi', 'Rhsim10G0214900' => 'rsi', 'Rhsim10G0215000' => 'rsi', 'Rhsim12G0022900' => 'rsi', 'Rhsim12G0177500' => 'rsi', 'Rhsim12G0177700' => 'rsi', 'Sabra03G0122600' => 'sbr', 'Sabra05G0097400' => 'sbr', 'Sabra12G0064100' => 'sbr', 'Sabra15G0121300' => 'sbr', 'SalBow2G0642' => 'sbo', 'SalBow5G2667' => 'sbo', 'SalBow5G4873' => 'sbo', 'SalBow8G2395' => 'sbo', 'Sc03g0003290' => 'sci', 'Sc10g0010130' => 'sci', 'Sc22g0003650' => 'sci', 'Sed0001603' => 'sed', 'Sed0004259' => 'sed', 'Sed0006789' => 'sed', 'Sed0011838' => 'sed', 'Sed0012964' => 'sed', 'Sed0016383' => 'sed', 'Sed0019010' => 'sed', 'Sed0020188' => 'sed', 'SEGI_04702' => 'sgi', 'SEGI_17231' => 'sgi', 'SEGI_18877' => 'sgi', 'SEGI_25196' => 'sgi', 'SEGI_25515' => 'sgi', 'SEGI_28445' => 'sgi', 'SEGI_37452' => 'sgi', 'SGA_v2.0_scaffold188G40336' => 'sas', 'SGA_v2.0_scaffold228G43247' => 'sas', 'SGA_v2.0_scaffold280G46853' => 'sas', 'SGA_v2.0_scaffold34G13808' => 'sas', 'SGA_v2.0_scaffold40G15576' => 'sas', 'SGA_v2.0_scaffold611G53188' => 'sas', 'SGA_v2.0_scaffold78G25461' => 'sas', 'SGA_v2.0_scaffold90G27888' => 'sas', 'SHI08601' => 'shi', 'SHI08606' => 'shi', 'SHI17117' => 'shi', 'SHI17119' => 'shi', 'SMO118G0201' => 'smo', 'SMO169G0247' => 'smo', 'SMO176G0006' => 'smo', 'SMO176G0015' => 'smo', 'SMO202G0006' => 'smo', 'SMO240G0050' => 'smo', 'SMO286G0009' => 'smo', 'SMO338G0033' => 'smo', 'SMO356G0533' => 'smo', 'SMO364G0382' => 'smo', 'SMO367G0166' => 'smo', 'SMO367G1098' => 'smo', 'Solyc01g009920.3' => 'sly', 'Solyc01g099300.3' => 'sly', 'Solyc02g084700.3' => 'sly', 'Solyc03g097520.3' => 'sly', 'Solyc06g071580.3' => 'sly', 'Solyc10g081760.3' => 'sly', 'Sopen01g005480' => 'spe', 'Sopen01g042850' => 'spe', 'Sopen02g029370' => 'spe', 'Sopen03g028280' => 'spe', 'Sopen06g027870' => 'spe', 'Sopen10g032270' => 'spe', 'Sp5g18180' => 'spa', 'Sp6g12880' => 'spa', 'Sp6g30850' => 'spa', 'Sp7g22960' => 'spa', 'Sp7g34010' => 'spa', 'SpUn1326_0010' => 'spa', 'TAR371G0242' => 'tar', 'TAR622G0638' => 'tar', 'TAR628G1548' => 'tar', 'TAR629G1079' => 'tar', 'TAR629G3413' => 'tar', 'THA.LOC104804249' => 'tha', 'THA.LOC104808315' => 'tha', 'THA.LOC104809238' => 'tha', 'THA.LOC104825484' => 'tha', 'Thecc.01G025500' => 'tca', 'Thecc.03G015800' => 'tca', 'Thecc.03G018000' => 'tca', 'Thecc.03G134800' => 'tca', 'Thecc.04G014700' => 'tca', 'Thhalv10006991m.g' => 'esa', 'Thhalv10012707m.g' => 'esa', 'Thhalv10015739m.g' => 'esa', 'Thhalv10024553m.g' => 'esa', 'Thhalv10024673m.g' => 'esa', 'Thhalv10029187m.g' => 'esa', 'TPR.G12971' => 'tpr', 'TPR.G29396' => 'tpr', 'TPR.G33376' => 'tpr', 'TPR.G35508' => 'tpr', 'TPR.G35516' => 'tpr', 'TPR.G37317' => 'tpr', 'TPR.G37389' => 'tpr', 'TPR.G37523' => 'tpr', 'TPR.G559' => 'tpr', 'TWI14G0070' => 'twi', 'TWI14G0729' => 'twi', 'TWI18G0596' => 'twi', 'TWI39G0780' => 'twi', 'TWI39G0850' => 'twi', 'TWI73G1052' => 'twi', 'unitig_52.g17485' => 'ugi', 'unitig_61.g26355' => 'ugi', 'vmacro01040' => 'vma', 'vmacro16731' => 'vma', 'vmacro18270' => 'vma', 'vmacro19142' => 'vma', 'vmacro19407' => 'vma', 'vmacro19408' => 'vma', 'vmacro21899' => 'vma', 'vmacro21900' => 'vma', 'vmacro21901' => 'vma', 'VMungo0251G0490' => 'vmu', 'VMungo0251G1748' => 'vmu', 'VMungo1309G0421' => 'vmu', 'Zm00001eb086500' => 'zma', 'Zm00001eb150680' => 'zma', 'Zm00001eb162330' => 'zma', 'Zm00001eb203130' => 'zma', 'Zm00001eb369480' => 'zma', 'Zm00001eb382340' => 'zma', 'Zm00001eb416360' => 'zma' ), 'gf_id' => 'HOM05D000902', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000902' ), 'data_identifier' => 'HOM05D000902', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000902', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '663', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02470' => 'bna', 'A01p16260' => 'bna', 'A02p01680' => 'bna', 'A03p16600' => 'bna', 'A03p55660' => 'bna', 'A03p64160' => 'bna', 'A03p64170' => 'bna', 'A08p31900' => 'bna', 'A09p59530' => 'bna', 'A10p08230' => 'bna', 'A10p25090' => 'bna', 'Aa31LG3G7100' => 'aar', 'Aa31LG3G7110' => 'aar', 'Aa31LG6G13160' => 'aar', 'Aa31LG7G10770' => 'aar', 'Aa31LG7G3830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2723' => 'aag', 'Actinidia08045' => 'ach', 'Actinidia08888' => 'ach', 'Actinidia18333' => 'ach', 'Actinidia19334' => 'ach', 'Actinidia25552' => 'ach', 'Actinidia26089' => 'ach', 'Actinidia30615' => 'ach', 'Actinidia30616' => 'ach', 'Actinidia33083' => 'ach', 'Actinidia35762' => 'ach', 'Ah.02g110620' => 'amhyb', 'Ah.11g046390' => 'amhyb', 'AL1G31670' => 'aly', 'AL6G23730' => 'aly', 'AL7G14740' => 'aly', 'AL7G14750' => 'aly', 'AL7G14760' => 'aly', 'AL7G28220' => 'aly', 'AL8G24940' => 'aly', 'Aqoxy3G01665' => 'aox', 'Aqoxy3G02853' => 'aox', 'Aqoxy5G01513' => 'aox', 'Aqoxy5G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8SKA4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ75LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKDA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0LJZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7REX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZP4YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWX7I5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2QKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS0L9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPCD8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q161UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC7XCF' => 'arhy', 'AT1G19100' => 'ath', 'AT4G24970' => 'ath', 'AT4G36270' => 'ath', 'AT4G36280' => 'ath', 'AT4G36290' => 'ath', 'AT5G13130' => 'ath', 'AT5G50780' => 'ath', 'ATR0582G266' => 'atr', 'ATR0661G195' => 'atr', 'ATR1152G031' => 'atr', 'Atru.chr11.2382' => 'acertr', 'Atru.chr12.2337' => 'acertr', 'Atru.chr3.744' => 'acertr', 'Atru.chr6.1870' => 'acertr', 'Atru.chr9.2515' => 'acertr', 'AUR62004120' => 'cqu', 'AUR62005667' => 'cqu', 'AUR62007634' => 'cqu', 'AUR62008186' => 'cqu', 'AUR62008187' => 'cqu', 'AUR62008188' => 'cqu', 'AUR62027954' => 'cqu', 'AUR62028766' => 'cqu', 'AUR62028767' => 'cqu', 'AUR62028768' => 'cqu', 'AUR62028886' => 'cqu', 'AUR62029563' => 'cqu', 'AUR62038832' => 'cqu', 'BcaB01g04149' => 'bca', 'BcaB03g12940' => 'bca', 'BcaB03g13090' => 'bca', 'BcaB03g14466' => 'bca', 'BcaB05g24035' => 'bca', 'BcaC01g06050' => 'bca', 'BcaC04g19148' => 'bca', 'BcaC04g20761' => 'bca', 'BcaC06g32845' => 'bca', 'BcaC07g41274' => 'bca', 'BcaC09g50827' => 'bca', 'BcaNung00741' => 'bca', 'BcaNung00742' => 'bca', 'BcaNung01859' => 'bca', 'BcaNung03985' => 'bca', 'BcaNung03989' => 'bca', 'BcaNung05661' => 'bca', 'BolC1t00257H' => 'bol', 'BolC1t01956H' => 'bol', 'BolC2t06534H' => 'bol', 'BolC3t14334H' => 'bol', 'BolC5t30451H' => 'bol', 'BolC7t45880H' => 'bol', 'BolC7t46586H' => 'bol', 'BolC8t49301H' => 'bol', 'BolC8t51837H' => 'bol', 'BolC9t56822H' => 'bol', 'BolC9t59235H' => 'bol', 'BraA01t00234Z' => 'bra', 'BraA01t01563Z' => 'bra', 'BraA02t05147Z' => 'bra', 'BraA03t10947Z' => 'bra', 'BraA03t14633Z' => 'bra', 'BraA08t35112Z' => 'bra', 'BraA09t41330Z' => 'bra', 'BraA10t44570Z' => 'bra', 'C01p02670' => 'bna', 'C01p20260' => 'bna', 'C02p05890' => 'bna', 'C03p19530' => 'bna', 'C05p17470' => 'bna', 'C07p53900' => 'bna', 'C07p61630' => 'bna', 'C08p16800' => 'bna', 'C08p42810' => 'bna', 'C09p39480' => 'bna', 'C09p63980' => 'bna', 'CAN.G1001.7' => 'can', 'CAN.G1034.55' => 'can', 'CAN.G143.7' => 'can', 'CAN.G3340.1' => 'can', 'CAN.G358.19' => 'can', 'CAN.G373.2' => 'can', 'CAN.G674.16' => 'can', 'CAN.G674.17' => 'can', 'CAN.G674.18' => 'can', 'CAN.G732.2' => 'can', 'CAN.G732.3' => 'can', 'CAN.G993.39' => 'can', 'CANSAT01G2052' => 'cansat', 'CANSAT80G0070' => 'cansat', 'CANSAT80G0483' => 'cansat', 'CANSAT80G0625' => 'cansat', 'CARHR019690' => 'chi', 'CARHR080280' => 'chi', 'CARHR152750' => 'chi', 'CARHR152760' => 'chi', 'CARHR152770' => 'chi', 'CARHR200340' => 'chi', 'CARHR232370' => 'chi', 'CARHR244670' => 'chi', 'CARHR244680' => 'chi', 'CARHR257520' => 'chi', 'Carub.0001s1872' => 'cru', 'Carub.0006s1130' => 'cru', 'Carub.0007s0396' => 'cru', 'Carub.0007s0397' => 'cru', 'Carub.0007s1608' => 'cru', 'Carub.0008s1068' => 'cru', 'Carub.0008s1077' => 'cru', 'Ca_16158_v3' => 'car', 'Ca_17571_v3' => 'car', 'Ca_21936_v3' => 'car', 'Ca_22350_v3' => 'car', 'CBR_g22445' => 'cbr', 'CBR_g26290' => 'cbr', 'Cc04_g09610' => 'ccan', 'Cc04_g12280' => 'ccan', 'Cc07_g10230' => 'ccan', 'CDE02G0093' => 'cde', 'CDE02G0701' => 'cde', 'CDE04G1050' => 'cde', 'CDE05G1833' => 'cde', 'CDE05G3058' => 'cde', 'CDE05G3380' => 'cde', 'CDE06G0536' => 'cde', 'Cfa006923' => 'cfa', 'Cfa009402' => 'cfa', 'Cfa018751' => 'cfa', 'Cfa019164' => 'cfa', 'Cfa022935' => 'cfa', 'Ciclev10019081m.g' => 'ccl', 'Ciclev10025076m.g' => 'ccl', 'Ciclev10030712m.g' => 'ccl', 'Ciclev10033760m.g' => 'ccl', 'CiPaw.05G105600' => 'cil', 'CiPaw.08G136700' => 'cil', 'CiPaw.11G003900' => 'cil', 'CiPaw.11G023700' => 'cil', 'CiPaw.12G003700' => 'cil', 'ClCG06G017100' => 'cla', 'ClCG06G018110' => 'cla', 'ClCG07G008800' => 'cla', 'ClCG07G015330' => 'cla', 'COL.COLO4_13698' => 'col', 'COL.COLO4_16659' => 'col', 'COL.COLO4_21986' => 'col', 'COL.COLO4_24049' => 'col', 'COL.COLO4_29061' => 'col', 'COL.COLO4_29075' => 'col', 'COL.COLO4_30094' => 'col', 'Cpa.g.c33689' => 'cpa', 'Cpa.g.sc108.39' => 'cpa', 'Cpa.g.sc108.41' => 'cpa', 'Cpa.g.sc1163.1' => 'cpa', 'Cpa.g.sc4.155' => 'cpa', 'Cpa.g.sc6.194' => 'cpa', 'CsaV3_1G000340' => 'csa', 'CsaV3_1G001400' => 'csa', 'CsaV3_4G002220' => 'csa', 'CsaV3_4G005370' => 'csa', 'CSS0007487' => 'camsi', 'CSS0008066' => 'camsi', 'CSS0009120' => 'camsi', 'CSS0015512' => 'camsi', 'CSS0022409' => 'camsi', 'CSS0025358' => 'camsi', 'CSS0044547' => 'camsi', 'DCAR_013057' => 'dca', 'DCAR_015058' => 'dca', 'DCAR_016027' => 'dca', 'DCAR_017327' => 'dca', 'DCAR_020743' => 'dca', 'DCAR_026157' => 'dca', 'DCAR_032339' => 'dca', 'DCAR_032340' => 'dca', 'Dinv11200' => 'din', 'Dinv11201' => 'din', 'Dinv20631' => 'din', 'Dinv23182' => 'din', 'Dinv33466' => 'din', 'Dinv33583' => 'din', 'Dinv38565' => 'din', 'Duzib068G0200' => 'dzi', 'Duzib147G0132' => 'dzi', 'Duzib147G0635' => 'dzi', 'Duzib205G1670' => 'dzi', 'Duzib251G0606' => 'dzi', 'ECA232G3336' => 'eca', 'ECA232G3763' => 'eca', 'ECA232G4845' => 'eca', 'ECA234G1607' => 'eca', 'ECA246G0932' => 'eca', 'ECA247G0781' => 'eca', 'ECA247G1932' => 'eca', 'ECA247G2079' => 'eca', 'ECA247G3338' => 'eca', 'ECA247G4115' => 'eca', 'EL10Ac3g06552' => 'bvu', 'EL10Ac5g10721' => 'bvu', 'EL10Ac5g10722' => 'bvu', 'EL10Ac5g10723' => 'bvu', 'EL10Ac5g11361' => 'bvu', 'EL10Ac6g13553' => 'bvu', 'EL10As8g23872' => 'bvu', 'Eucgr.B00250' => 'egr', 'Eucgr.B00251' => 'egr', 'Eucgr.B03533' => 'egr', 'Eucgr.I02381' => 'egr', 'Eucgr.K02700' => 'egr', 'FAN02G0174' => 'fan', 'FAN02G3146' => 'fan', 'FAN04G1672' => 'fan', 'FAN04G2273' => 'fan', 'FAN05G2791' => 'fan', 'FAN05G4035' => 'fan', 'FAN07G0834' => 'fan', 'FAN08G1198' => 'fan', 'FAN09G4182' => 'fan', 'FAN12G0496' => 'fan', 'FAN13G1027' => 'fan', 'FAN13G2951' => 'fan', 'FAN14G0705' => 'fan', 'FAN14G0720' => 'fan', 'FAN17G0201' => 'fan', 'FAN17G2665' => 'fan', 'FAN18G1456' => 'fan', 'FAN18G1525' => 'fan', 'FAN18G3500' => 'fan', 'FAN28G2670' => 'fan', 'FvH4_1g12391' => 'fve', 'FvH4_4g23220' => 'fve', 'FvH4_5g08810' => 'fve', 'FvH4_5g28960' => 'fve', 'FvH4_6g42820' => 'fve', 'FvH4_6g51110' => 'fve', 'Glyma.02G051802' => 'gma', 'Glyma.04G185300' => 'gma', 'Glyma.05G202900' => 'gma', 'Glyma.08G010300' => 'gma', 'Glyma.16G131900' => 'gma', 'Glyma.17G087900' => 'gma', 'Gohir.A07G048600' => 'ghi', 'Gohir.A11G179000' => 'ghi', 'Gohir.A12G140900' => 'ghi', 'Gohir.A12G140950' => 'ghi', 'Gohir.A12G191700' => 'ghi', 'Gohir.A13G086300' => 'ghi', 'Gohir.D07G052900' => 'ghi', 'Gohir.D11G186600' => 'ghi', 'Gohir.D12G145575' => 'ghi', 'Gohir.D12G145650' => 'ghi', 'Gohir.D12G145725' => 'ghi', 'Gohir.D12G194050' => 'ghi', 'Gohir.D13G091800' => 'ghi', 'Gorai.001G055900' => 'gra', 'Gorai.007G198400' => 'gra', 'Gorai.008G157000' => 'gra', 'Gorai.008G157100' => 'gra', 'Gorai.008G208700' => 'gra', 'Gorai.010G138700' => 'gra', 'GSVIVG01000977001' => 'vvi', 'GSVIVG01007708001' => 'vvi', 'GSVIVG01008587001' => 'vvi', 'GSVIVG01018849001' => 'vvi', 'GSVIVG01032432001' => 'vvi', 'HanXRQChr02g0034131' => 'han', 'HanXRQChr02g0035981' => 'han', 'HanXRQChr02g0035991' => 'han', 'HanXRQChr05g0155611' => 'han', 'HanXRQChr05g0155621' => 'han', 'HanXRQChr08g0236501' => 'han', 'HanXRQChr09g0261321' => 'han', 'HanXRQChr09g0272081' => 'han', 'HanXRQChr10g0310741' => 'han', 'HanXRQChr11g0325591' => 'han', 'HanXRQChr12g0385691' => 'han', 'HanXRQChr13g0387801' => 'han', 'HanXRQChr15g0463011' => 'han', 'Haze_03826' => 'cav', 'Haze_03827' => 'cav', 'Haze_07183' => 'cav', 'Haze_07537' => 'cav', 'Haze_07539' => 'cav', 'Haze_12461' => 'cav', 'Haze_16115' => 'cav', 'Haze_16808' => 'cav', 'Haze_18531' => 'cav', 'Hma1.2p1_0046F.1_g026700' => 'hma', 'Hma1.2p1_0046F.1_g026710' => 'hma', 'Hma1.2p1_0168F.1_g074340' => 'hma', 'Hma1.2p1_0266F.1_g107030' => 'hma', 'Hma1.2p1_0266F.1_g107060' => 'hma', 'Hma1.2p1_0275F.1_g110510' => 'hma', 'Hma1.2p1_0592F.1_g185490' => 'hma', 'Hma1.2p1_0592F.1_g185500' => 'hma', 'Hma1.2p1_0592F.1_g185510' => 'hma', 'Hma1.2p1_0592F.1_g185520' => 'hma', 'Hma1.2p1_0592F.1_g185530' => 'hma', 'Hma1.2p1_0818F.1_g223450' => 'hma', 'HPP92_009708' => 'vpl', 'HPP92_009793' => 'vpl', 'HPP92_009796' => 'vpl', 'HPP92_009797' => 'vpl', 'HPP92_014940' => 'vpl', 'HPP92_014988' => 'vpl', 'Hund02463' => 'sun', 'Hund02760' => 'sun', 'Hund05071' => 'sun', 'Hund10108' => 'sun', 'Hund11204' => 'sun', 'Hund14016' => 'sun', 'Hund16464' => 'sun', 'Lalb_Chr09g0333391' => 'lal', 'Lalb_Chr11g0070461' => 'lal', 'Lalb_Chr12g0201671' => 'lal', 'Lalb_Chr13g0297161' => 'lal', 'Lj1g0002823' => 'lja', 'Lj3C1074T6' => 'lonja', 'Lj4A212T28' => 'lonja', 'Lj4g0005516' => 'lja', 'Lj4g0013705' => 'lja', 'Lj4g0027865' => 'lja', 'Lj5C92G16' => 'lonja', 'Lj5C92T12' => 'lonja', 'Lj7C596T3' => 'lonja', 'Lj9A446G59' => 'lonja', 'Lj9A482G21' => 'lonja', 'Lsat_1_v5_gn_1_28261' => 'lsa', 'Lsat_1_v5_gn_1_28281' => 'lsa', 'Lsat_1_v5_gn_1_32721' => 'lsa', 'Lsat_1_v5_gn_4_151760' => 'lsa', 'Lsat_1_v5_gn_4_2120' => 'lsa', 'Lsat_1_v5_gn_4_75761' => 'lsa', 'Lsat_1_v5_gn_5_10920' => 'lsa', 'Manes.02G099900' => 'mes', 'Manes.11G096200' => 'mes', 'Manes.12G007200' => 'mes', 'Manes.14G048300' => 'mes', 'Manes.17G114700' => 'mes', 'Mapoly0002s0070' => 'mpo', 'Mapoly0029s0099' => 'mpo', 'MBI07_g24742_MAGBIO' => 'mbi', 'MBI10_g27988_MAGBIO' => 'mbi', 'MBI11_g13057_MAGBIO' => 'mbi', 'MD02G1137200' => 'mdo', 'MD06G1137200' => 'mdo', 'MD07G1122300' => 'mdo', 'MD09G1078200' => 'mdo', 'MD13G1123700' => 'mdo', 'MD14G1151900' => 'mdo', 'MD17G1030900' => 'mdo', 'MD17G1068200' => 'mdo', 'MD17G1068600' => 'mdo', 'Medtr3g077540' => 'mtr', 'Medtr4g105530' => 'mtr', 'Medtr8g076580' => 'mtr', 'Medtr8g076590' => 'mtr', 'Medtr8g096410' => 'mtr', 'MELO3C016411.2' => 'cme', 'MELO3C017780.2' => 'cme', 'MELO3C022560.2' => 'cme', 'MELO3C026187.2' => 'cme', 'MELO3C026286.2' => 'cme', 'MELO3C032854.2' => 'cme', 'Migut.H02495' => 'egut', 'Migut.I00561' => 'egut', 'Migut.K01015' => 'egut', 'Migut.K01016' => 'egut', 'Migut.L00743' => 'egut', 'Migut.L00744' => 'egut', 'Migut.L00746' => 'egut', 'Migut.L00798' => 'egut', 'Migut.L00799' => 'egut', 'Migut.N02096' => 'egut', 'MSTRG.11259' => 'ama', 'MSTRG.23142' => 'ama', 'MSTRG.2499' => 'ama', 'Nitab4.5_0000003g0730' => 'nta', 'Nitab4.5_0000137g0020' => 'nta', 'Nitab4.5_0000721g0210' => 'nta', 'Nitab4.5_0000723g0050' => 'nta', 'Nitab4.5_0000913g0070' => 'nta', 'Nitab4.5_0001332g0040' => 'nta', 'Nitab4.5_0001771g0050' => 'nta', 'Nitab4.5_0001918g0050' => 'nta', 'Nitab4.5_0002686g0030' => 'nta', 'Nitab4.5_0003156g0020' => 'nta', 'Nitab4.5_0003383g0040' => 'nta', 'Nitab4.5_0003918g0010' => 'nta', 'Nitab4.5_0006760g0010' => 'nta', 'Nn1g05981' => 'nnu', 'Nn1g06288' => 'nnu', 'Nn3g16371' => 'nnu', 'Nn3g16786' => 'nnu', 'Nn4g22232' => 'nnu', 'Oeu005144.1' => 'oeu', 'Oeu005145.1' => 'oeu', 'Oeu011348.1' => 'oeu', 'Oeu016415.1' => 'oeu', 'Oeu023501.1' => 'oeu', 'Oeu044473.1' => 'oeu', 'Oeu048892.2' => 'oeu', 'Os01g0549200' => 'osa', 'Os02g0469300' => 'osa', 'Os04g0311100' => 'osa', 'Os06g0474900' => 'osa', 'Os10g0181700' => 'osa', 'Os11g0454800' => 'osa', 'Peaxi162Scf00037g00714' => 'pax', 'Peaxi162Scf00084g01217' => 'pax', 'Peaxi162Scf00257g00217' => 'pax', 'Peaxi162Scf00516g00215' => 'pax', 'Peaxi162Scf00689g00123' => 'pax', 'PGR044G2719' => 'pgr', 'PGR083G1360' => 'pgr', 'PGR102G2849' => 'pgr', 'PGR119G2534' => 'pgr', 'PGSC0003DMG400003538' => 'stu', 'PGSC0003DMG400028138' => 'stu', 'PGSC0003DMG400031732' => 'stu', 'PGSC0003DMG400038165' => 'stu', 'Phvul.002G284600' => 'pvu', 'Phvul.003G258200' => 'pvu', 'Phvul.009G176500' => 'pvu', 'Potri.003G167201' => 'ptr', 'Potri.005G118400' => 'ptr', 'Potri.012G089000' => 'ptr', 'Potri.012G102800' => 'ptr', 'Potri.015G079400' => 'ptr', 'Potri.015G100900' => 'ptr', 'Pp3c14_9810' => 'ppa', 'Pp3c15_10450' => 'ppa', 'Pp3c20_19150' => 'ppa', 'Pp3c23_12740' => 'ppa', 'Pp3c23_6310' => 'ppa', 'Pp3c24_3720' => 'ppa', 'Pp3c27_2580' => 'ppa', 'Pp3c9_8990' => 'ppa', 'PRCOL_00002854' => 'pco', 'Prupe.1G221200' => 'ppe', 'Prupe.3G289000' => 'ppe', 'Prupe.5G147000' => 'ppe', 'Prupe.6G157300' => 'ppe', 'Prupe.7G163400' => 'ppe', 'Psat0s2177g0040' => 'psa', 'Psat3g174760' => 'psa', 'Psat3g192160' => 'psa', 'Psat4g058520' => 'psa', 'Psat4g096840' => 'psa', 'Psat7g037320' => 'psa', 'PSO017G1274' => 'pso', 'PSO017G5166' => 'pso', 'PSO063G4558' => 'pso', 'PSO170G4458' => 'pso', 'PSO170G5005' => 'pso', 'PSO210G6156' => 'pso', 'PSO210G6635' => 'pso', 'PSO210G7397' => 'pso', 'PSO210G7700' => 'pso', 'PSO455G0035' => 'pso', 'PSO455G0180' => 'pso', 'PSO478G4515' => 'pso', 'PSO832G1305' => 'pso', 'PSO832G3489' => 'pso', 'QL02p075247' => 'qlo', 'QL03p051148' => 'qlo', 'QL05p010313' => 'qlo', 'QL06p034627' => 'qlo', 'QL10p001889' => 'qlo', 'QL10p010846' => 'qlo', 'RcHm_v2.0_Chr1g0350621' => 'rch', 'RcHm_v2.0_Chr1g0350641' => 'rch', 'RcHm_v2.0_Chr2g0092891' => 'rch', 'RcHm_v2.0_Chr2g0100251' => 'rch', 'RcHm_v2.0_Chr2g0158661' => 'rch', 'RcHm_v2.0_Chr2g0172741' => 'rch', 'RcHm_v2.0_Chr4g0429571' => 'rch', 'RcHm_v2.0_Chr5g0042471' => 'rch', 'RcHm_v2.0_Chr7g0189451' => 'rch', 'Rhsim08G0052000' => 'rsi', 'Rhsim08G0174400' => 'rsi', 'Rhsim08G0193200' => 'rsi', 'Rhsim10G0214800' => 'rsi', 'Rhsim10G0214900' => 'rsi', 'Rhsim10G0215000' => 'rsi', 'Rhsim12G0022900' => 'rsi', 'Rhsim12G0177500' => 'rsi', 'Rhsim12G0177700' => 'rsi', 'Sabra03G0122600' => 'sbr', 'Sabra05G0097400' => 'sbr', 'Sabra12G0064100' => 'sbr', 'Sabra15G0121300' => 'sbr', 'SalBow2G0642' => 'sbo', 'SalBow5G2667' => 'sbo', 'SalBow5G4873' => 'sbo', 'SalBow8G2395' => 'sbo', 'Sc03g0003290' => 'sci', 'Sc10g0010130' => 'sci', 'Sc22g0003650' => 'sci', 'Sed0001603' => 'sed', 'Sed0004259' => 'sed', 'Sed0006789' => 'sed', 'Sed0011838' => 'sed', 'Sed0012964' => 'sed', 'Sed0016383' => 'sed', 'Sed0019010' => 'sed', 'Sed0020188' => 'sed', 'SEGI_04702' => 'sgi', 'SEGI_17231' => 'sgi', 'SEGI_18877' => 'sgi', 'SEGI_25196' => 'sgi', 'SEGI_25515' => 'sgi', 'SEGI_28445' => 'sgi', 'SEGI_37452' => 'sgi', 'SGA_v2.0_scaffold188G40336' => 'sas', 'SGA_v2.0_scaffold228G43247' => 'sas', 'SGA_v2.0_scaffold280G46853' => 'sas', 'SGA_v2.0_scaffold34G13808' => 'sas', 'SGA_v2.0_scaffold40G15576' => 'sas', 'SGA_v2.0_scaffold611G53188' => 'sas', 'SGA_v2.0_scaffold78G25461' => 'sas', 'SGA_v2.0_scaffold90G27888' => 'sas', 'SHI08601' => 'shi', 'SHI08606' => 'shi', 'SHI17117' => 'shi', 'SHI17119' => 'shi', 'SMO118G0201' => 'smo', 'SMO169G0247' => 'smo', 'SMO176G0006' => 'smo', 'SMO176G0015' => 'smo', 'SMO202G0006' => 'smo', 'SMO240G0050' => 'smo', 'SMO286G0009' => 'smo', 'SMO338G0033' => 'smo', 'SMO356G0533' => 'smo', 'SMO364G0382' => 'smo', 'SMO367G0166' => 'smo', 'SMO367G1098' => 'smo', 'Solyc01g009920.3' => 'sly', 'Solyc01g099300.3' => 'sly', 'Solyc02g084700.3' => 'sly', 'Solyc03g097520.3' => 'sly', 'Solyc06g071580.3' => 'sly', 'Solyc10g081760.3' => 'sly', 'Sopen01g005480' => 'spe', 'Sopen01g042850' => 'spe', 'Sopen02g029370' => 'spe', 'Sopen03g028280' => 'spe', 'Sopen06g027870' => 'spe', 'Sopen10g032270' => 'spe', 'Sp5g18180' => 'spa', 'Sp6g12880' => 'spa', 'Sp6g30850' => 'spa', 'Sp7g22960' => 'spa', 'Sp7g34010' => 'spa', 'SpUn1326_0010' => 'spa', 'TAR371G0242' => 'tar', 'TAR622G0638' => 'tar', 'TAR628G1548' => 'tar', 'TAR629G1079' => 'tar', 'TAR629G3413' => 'tar', 'THA.LOC104804249' => 'tha', 'THA.LOC104808315' => 'tha', 'THA.LOC104809238' => 'tha', 'THA.LOC104825484' => 'tha', 'Thecc.01G025500' => 'tca', 'Thecc.03G015800' => 'tca', 'Thecc.03G018000' => 'tca', 'Thecc.03G134800' => 'tca', 'Thecc.04G014700' => 'tca', 'Thhalv10006991m.g' => 'esa', 'Thhalv10012707m.g' => 'esa', 'Thhalv10015739m.g' => 'esa', 'Thhalv10024553m.g' => 'esa', 'Thhalv10024673m.g' => 'esa', 'Thhalv10029187m.g' => 'esa', 'TPR.G12971' => 'tpr', 'TPR.G29396' => 'tpr', 'TPR.G33376' => 'tpr', 'TPR.G35508' => 'tpr', 'TPR.G35516' => 'tpr', 'TPR.G37317' => 'tpr', 'TPR.G37389' => 'tpr', 'TPR.G37523' => 'tpr', 'TPR.G559' => 'tpr', 'TWI14G0070' => 'twi', 'TWI14G0729' => 'twi', 'TWI18G0596' => 'twi', 'TWI39G0780' => 'twi', 'TWI39G0850' => 'twi', 'TWI73G1052' => 'twi', 'unitig_52.g17485' => 'ugi', 'unitig_61.g26355' => 'ugi', 'vmacro01040' => 'vma', 'vmacro16731' => 'vma', 'vmacro18270' => 'vma', 'vmacro19142' => 'vma', 'vmacro19407' => 'vma', 'vmacro19408' => 'vma', 'vmacro21899' => 'vma', 'vmacro21900' => 'vma', 'vmacro21901' => 'vma', 'VMungo0251G0490' => 'vmu', 'VMungo0251G1748' => 'vmu', 'VMungo1309G0421' => 'vmu', 'Zm00001eb086500' => 'zma', 'Zm00001eb150680' => 'zma', 'Zm00001eb162330' => 'zma', 'Zm00001eb203130' => 'zma', 'Zm00001eb369480' => 'zma', 'Zm00001eb382340' => 'zma', 'Zm00001eb416360' => 'zma' ) $gf_id = 'HOM05D000902' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000902' ) $data_identifier = 'HOM05D000902' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 13, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 10, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 6, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 9, 'hma' => (int) 12, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 4, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 6, 'ppa' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 6, 'rch' => (int) 9, 'rsi' => (int) 9, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 12, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 3, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416360' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000902', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '663', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02470' => 'bna', 'A01p16260' => 'bna', 'A02p01680' => 'bna', 'A03p16600' => 'bna', 'A03p55660' => 'bna', 'A03p64160' => 'bna', 'A03p64170' => 'bna', 'A08p31900' => 'bna', 'A09p59530' => 'bna', 'A10p08230' => 'bna', 'A10p25090' => 'bna', 'Aa31LG3G7100' => 'aar', 'Aa31LG3G7110' => 'aar', 'Aa31LG6G13160' => 'aar', 'Aa31LG7G10770' => 'aar', 'Aa31LG7G3830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2723' => 'aag', 'Actinidia08045' => 'ach', 'Actinidia08888' => 'ach', 'Actinidia18333' => 'ach', 'Actinidia19334' => 'ach', 'Actinidia25552' => 'ach', 'Actinidia26089' => 'ach', 'Actinidia30615' => 'ach', 'Actinidia30616' => 'ach', 'Actinidia33083' => 'ach', 'Actinidia35762' => 'ach', 'Ah.02g110620' => 'amhyb', 'Ah.11g046390' => 'amhyb', 'AL1G31670' => 'aly', 'AL6G23730' => 'aly', 'AL7G14740' => 'aly', 'AL7G14750' => 'aly', 'AL7G14760' => 'aly', 'AL7G28220' => 'aly', 'AL8G24940' => 'aly', 'Aqoxy3G01665' => 'aox', 'Aqoxy3G02853' => 'aox', 'Aqoxy5G01513' => 'aox', 'Aqoxy5G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8SKA4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ75LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKDA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0LJZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7REX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZP4YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWX7I5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2QKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS0L9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPCD8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q161UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC7XCF' => 'arhy', 'AT1G19100' => 'ath', 'AT4G24970' => 'ath', 'AT4G36270' => 'ath', 'AT4G36280' => 'ath', 'AT4G36290' => 'ath', 'AT5G13130' => 'ath', 'AT5G50780' => 'ath', 'ATR0582G266' => 'atr', 'ATR0661G195' => 'atr', 'ATR1152G031' => 'atr', 'Atru.chr11.2382' => 'acertr', 'Atru.chr12.2337' => 'acertr', 'Atru.chr3.744' => 'acertr', 'Atru.chr6.1870' => 'acertr', 'Atru.chr9.2515' => 'acertr', 'AUR62004120' => 'cqu', 'AUR62005667' => 'cqu', 'AUR62007634' => 'cqu', 'AUR62008186' => 'cqu', 'AUR62008187' => 'cqu', 'AUR62008188' => 'cqu', 'AUR62027954' => 'cqu', 'AUR62028766' => 'cqu', 'AUR62028767' => 'cqu', 'AUR62028768' => 'cqu', 'AUR62028886' => 'cqu', 'AUR62029563' => 'cqu', 'AUR62038832' => 'cqu', 'BcaB01g04149' => 'bca', 'BcaB03g12940' => 'bca', 'BcaB03g13090' => 'bca', 'BcaB03g14466' => 'bca', 'BcaB05g24035' => 'bca', 'BcaC01g06050' => 'bca', 'BcaC04g19148' => 'bca', 'BcaC04g20761' => 'bca', 'BcaC06g32845' => 'bca', 'BcaC07g41274' => 'bca', 'BcaC09g50827' => 'bca', 'BcaNung00741' => 'bca', 'BcaNung00742' => 'bca', 'BcaNung01859' => 'bca', 'BcaNung03985' => 'bca', 'BcaNung03989' => 'bca', 'BcaNung05661' => 'bca', 'BolC1t00257H' => 'bol', 'BolC1t01956H' => 'bol', 'BolC2t06534H' => 'bol', 'BolC3t14334H' => 'bol', 'BolC5t30451H' => 'bol', 'BolC7t45880H' => 'bol', 'BolC7t46586H' => 'bol', 'BolC8t49301H' => 'bol', 'BolC8t51837H' => 'bol', 'BolC9t56822H' => 'bol', 'BolC9t59235H' => 'bol', 'BraA01t00234Z' => 'bra', 'BraA01t01563Z' => 'bra', 'BraA02t05147Z' => 'bra', 'BraA03t10947Z' => 'bra', 'BraA03t14633Z' => 'bra', 'BraA08t35112Z' => 'bra', 'BraA09t41330Z' => 'bra', 'BraA10t44570Z' => 'bra', 'C01p02670' => 'bna', 'C01p20260' => 'bna', 'C02p05890' => 'bna', 'C03p19530' => 'bna', 'C05p17470' => 'bna', 'C07p53900' => 'bna', 'C07p61630' => 'bna', 'C08p16800' => 'bna', 'C08p42810' => 'bna', 'C09p39480' => 'bna', 'C09p63980' => 'bna', 'CAN.G1001.7' => 'can', 'CAN.G1034.55' => 'can', 'CAN.G143.7' => 'can', 'CAN.G3340.1' => 'can', 'CAN.G358.19' => 'can', 'CAN.G373.2' => 'can', 'CAN.G674.16' => 'can', 'CAN.G674.17' => 'can', 'CAN.G674.18' => 'can', 'CAN.G732.2' => 'can', 'CAN.G732.3' => 'can', 'CAN.G993.39' => 'can', 'CANSAT01G2052' => 'cansat', 'CANSAT80G0070' => 'cansat', 'CANSAT80G0483' => 'cansat', 'CANSAT80G0625' => 'cansat', 'CARHR019690' => 'chi', 'CARHR080280' => 'chi', 'CARHR152750' => 'chi', 'CARHR152760' => 'chi', 'CARHR152770' => 'chi', 'CARHR200340' => 'chi', 'CARHR232370' => 'chi', 'CARHR244670' => 'chi', 'CARHR244680' => 'chi', 'CARHR257520' => 'chi', 'Carub.0001s1872' => 'cru', 'Carub.0006s1130' => 'cru', 'Carub.0007s0396' => 'cru', 'Carub.0007s0397' => 'cru', 'Carub.0007s1608' => 'cru', 'Carub.0008s1068' => 'cru', 'Carub.0008s1077' => 'cru', 'Ca_16158_v3' => 'car', 'Ca_17571_v3' => 'car', 'Ca_21936_v3' => 'car', 'Ca_22350_v3' => 'car', 'CBR_g22445' => 'cbr', 'CBR_g26290' => 'cbr', 'Cc04_g09610' => 'ccan', 'Cc04_g12280' => 'ccan', 'Cc07_g10230' => 'ccan', 'CDE02G0093' => 'cde', 'CDE02G0701' => 'cde', 'CDE04G1050' => 'cde', 'CDE05G1833' => 'cde', 'CDE05G3058' => 'cde', 'CDE05G3380' => 'cde', 'CDE06G0536' => 'cde', 'Cfa006923' => 'cfa', 'Cfa009402' => 'cfa', 'Cfa018751' => 'cfa', 'Cfa019164' => 'cfa', 'Cfa022935' => 'cfa', 'Ciclev10019081m.g' => 'ccl', 'Ciclev10025076m.g' => 'ccl', 'Ciclev10030712m.g' => 'ccl', 'Ciclev10033760m.g' => 'ccl', 'CiPaw.05G105600' => 'cil', 'CiPaw.08G136700' => 'cil', 'CiPaw.11G003900' => 'cil', 'CiPaw.11G023700' => 'cil', 'CiPaw.12G003700' => 'cil', 'ClCG06G017100' => 'cla', 'ClCG06G018110' => 'cla', 'ClCG07G008800' => 'cla', 'ClCG07G015330' => 'cla', 'COL.COLO4_13698' => 'col', 'COL.COLO4_16659' => 'col', 'COL.COLO4_21986' => 'col', 'COL.COLO4_24049' => 'col', 'COL.COLO4_29061' => 'col', 'COL.COLO4_29075' => 'col', 'COL.COLO4_30094' => 'col', 'Cpa.g.c33689' => 'cpa', 'Cpa.g.sc108.39' => 'cpa', 'Cpa.g.sc108.41' => 'cpa', 'Cpa.g.sc1163.1' => 'cpa', 'Cpa.g.sc4.155' => 'cpa', 'Cpa.g.sc6.194' => 'cpa', 'CsaV3_1G000340' => 'csa', 'CsaV3_1G001400' => 'csa', 'CsaV3_4G002220' => 'csa', 'CsaV3_4G005370' => 'csa', 'CSS0007487' => 'camsi', 'CSS0008066' => 'camsi', 'CSS0009120' => 'camsi', 'CSS0015512' => 'camsi', 'CSS0022409' => 'camsi', 'CSS0025358' => 'camsi', 'CSS0044547' => 'camsi', 'DCAR_013057' => 'dca', 'DCAR_015058' => 'dca', 'DCAR_016027' => 'dca', 'DCAR_017327' => 'dca', 'DCAR_020743' => 'dca', 'DCAR_026157' => 'dca', 'DCAR_032339' => 'dca', 'DCAR_032340' => 'dca', 'Dinv11200' => 'din', 'Dinv11201' => 'din', 'Dinv20631' => 'din', 'Dinv23182' => 'din', 'Dinv33466' => 'din', 'Dinv33583' => 'din', 'Dinv38565' => 'din', 'Duzib068G0200' => 'dzi', 'Duzib147G0132' => 'dzi', 'Duzib147G0635' => 'dzi', 'Duzib205G1670' => 'dzi', 'Duzib251G0606' => 'dzi', 'ECA232G3336' => 'eca', 'ECA232G3763' => 'eca', 'ECA232G4845' => 'eca', 'ECA234G1607' => 'eca', 'ECA246G0932' => 'eca', 'ECA247G0781' => 'eca', 'ECA247G1932' => 'eca', 'ECA247G2079' => 'eca', 'ECA247G3338' => 'eca', 'ECA247G4115' => 'eca', 'EL10Ac3g06552' => 'bvu', 'EL10Ac5g10721' => 'bvu', 'EL10Ac5g10722' => 'bvu', 'EL10Ac5g10723' => 'bvu', 'EL10Ac5g11361' => 'bvu', 'EL10Ac6g13553' => 'bvu', 'EL10As8g23872' => 'bvu', 'Eucgr.B00250' => 'egr', 'Eucgr.B00251' => 'egr', 'Eucgr.B03533' => 'egr', 'Eucgr.I02381' => 'egr', 'Eucgr.K02700' => 'egr', 'FAN02G0174' => 'fan', 'FAN02G3146' => 'fan', 'FAN04G1672' => 'fan', 'FAN04G2273' => 'fan', 'FAN05G2791' => 'fan', 'FAN05G4035' => 'fan', 'FAN07G0834' => 'fan', 'FAN08G1198' => 'fan', 'FAN09G4182' => 'fan', 'FAN12G0496' => 'fan', 'FAN13G1027' => 'fan', 'FAN13G2951' => 'fan', 'FAN14G0705' => 'fan', 'FAN14G0720' => 'fan', 'FAN17G0201' => 'fan', 'FAN17G2665' => 'fan', 'FAN18G1456' => 'fan', 'FAN18G1525' => 'fan', 'FAN18G3500' => 'fan', 'FAN28G2670' => 'fan', 'FvH4_1g12391' => 'fve', 'FvH4_4g23220' => 'fve', 'FvH4_5g08810' => 'fve', 'FvH4_5g28960' => 'fve', 'FvH4_6g42820' => 'fve', 'FvH4_6g51110' => 'fve', 'Glyma.02G051802' => 'gma', 'Glyma.04G185300' => 'gma', 'Glyma.05G202900' => 'gma', 'Glyma.08G010300' => 'gma', 'Glyma.16G131900' => 'gma', 'Glyma.17G087900' => 'gma', 'Gohir.A07G048600' => 'ghi', 'Gohir.A11G179000' => 'ghi', 'Gohir.A12G140900' => 'ghi', 'Gohir.A12G140950' => 'ghi', 'Gohir.A12G191700' => 'ghi', 'Gohir.A13G086300' => 'ghi', 'Gohir.D07G052900' => 'ghi', 'Gohir.D11G186600' => 'ghi', 'Gohir.D12G145575' => 'ghi', 'Gohir.D12G145650' => 'ghi', 'Gohir.D12G145725' => 'ghi', 'Gohir.D12G194050' => 'ghi', 'Gohir.D13G091800' => 'ghi', 'Gorai.001G055900' => 'gra', 'Gorai.007G198400' => 'gra', 'Gorai.008G157000' => 'gra', 'Gorai.008G157100' => 'gra', 'Gorai.008G208700' => 'gra', 'Gorai.010G138700' => 'gra', 'GSVIVG01000977001' => 'vvi', 'GSVIVG01007708001' => 'vvi', 'GSVIVG01008587001' => 'vvi', 'GSVIVG01018849001' => 'vvi', 'GSVIVG01032432001' => 'vvi', 'HanXRQChr02g0034131' => 'han', 'HanXRQChr02g0035981' => 'han', 'HanXRQChr02g0035991' => 'han', 'HanXRQChr05g0155611' => 'han', 'HanXRQChr05g0155621' => 'han', 'HanXRQChr08g0236501' => 'han', 'HanXRQChr09g0261321' => 'han', 'HanXRQChr09g0272081' => 'han', 'HanXRQChr10g0310741' => 'han', 'HanXRQChr11g0325591' => 'han', 'HanXRQChr12g0385691' => 'han', 'HanXRQChr13g0387801' => 'han', 'HanXRQChr15g0463011' => 'han', 'Haze_03826' => 'cav', 'Haze_03827' => 'cav', 'Haze_07183' => 'cav', 'Haze_07537' => 'cav', 'Haze_07539' => 'cav', 'Haze_12461' => 'cav', 'Haze_16115' => 'cav', 'Haze_16808' => 'cav', 'Haze_18531' => 'cav', 'Hma1.2p1_0046F.1_g026700' => 'hma', 'Hma1.2p1_0046F.1_g026710' => 'hma', 'Hma1.2p1_0168F.1_g074340' => 'hma', 'Hma1.2p1_0266F.1_g107030' => 'hma', 'Hma1.2p1_0266F.1_g107060' => 'hma', 'Hma1.2p1_0275F.1_g110510' => 'hma', 'Hma1.2p1_0592F.1_g185490' => 'hma', 'Hma1.2p1_0592F.1_g185500' => 'hma', 'Hma1.2p1_0592F.1_g185510' => 'hma', 'Hma1.2p1_0592F.1_g185520' => 'hma', 'Hma1.2p1_0592F.1_g185530' => 'hma', 'Hma1.2p1_0818F.1_g223450' => 'hma', 'HPP92_009708' => 'vpl', 'HPP92_009793' => 'vpl', 'HPP92_009796' => 'vpl', 'HPP92_009797' => 'vpl', 'HPP92_014940' => 'vpl', 'HPP92_014988' => 'vpl', 'Hund02463' => 'sun', 'Hund02760' => 'sun', 'Hund05071' => 'sun', 'Hund10108' => 'sun', 'Hund11204' => 'sun', 'Hund14016' => 'sun', 'Hund16464' => 'sun', 'Lalb_Chr09g0333391' => 'lal', 'Lalb_Chr11g0070461' => 'lal', 'Lalb_Chr12g0201671' => 'lal', 'Lalb_Chr13g0297161' => 'lal', 'Lj1g0002823' => 'lja', 'Lj3C1074T6' => 'lonja', 'Lj4A212T28' => 'lonja', 'Lj4g0005516' => 'lja', 'Lj4g0013705' => 'lja', 'Lj4g0027865' => 'lja', 'Lj5C92G16' => 'lonja', 'Lj5C92T12' => 'lonja', 'Lj7C596T3' => 'lonja', 'Lj9A446G59' => 'lonja', 'Lj9A482G21' => 'lonja', 'Lsat_1_v5_gn_1_28261' => 'lsa', 'Lsat_1_v5_gn_1_28281' => 'lsa', 'Lsat_1_v5_gn_1_32721' => 'lsa', 'Lsat_1_v5_gn_4_151760' => 'lsa', 'Lsat_1_v5_gn_4_2120' => 'lsa', 'Lsat_1_v5_gn_4_75761' => 'lsa', 'Lsat_1_v5_gn_5_10920' => 'lsa', 'Manes.02G099900' => 'mes', 'Manes.11G096200' => 'mes', 'Manes.12G007200' => 'mes', 'Manes.14G048300' => 'mes', 'Manes.17G114700' => 'mes', 'Mapoly0002s0070' => 'mpo', 'Mapoly0029s0099' => 'mpo', 'MBI07_g24742_MAGBIO' => 'mbi', 'MBI10_g27988_MAGBIO' => 'mbi', 'MBI11_g13057_MAGBIO' => 'mbi', 'MD02G1137200' => 'mdo', 'MD06G1137200' => 'mdo', 'MD07G1122300' => 'mdo', 'MD09G1078200' => 'mdo', 'MD13G1123700' => 'mdo', 'MD14G1151900' => 'mdo', 'MD17G1030900' => 'mdo', 'MD17G1068200' => 'mdo', 'MD17G1068600' => 'mdo', 'Medtr3g077540' => 'mtr', 'Medtr4g105530' => 'mtr', 'Medtr8g076580' => 'mtr', 'Medtr8g076590' => 'mtr', 'Medtr8g096410' => 'mtr', 'MELO3C016411.2' => 'cme', 'MELO3C017780.2' => 'cme', 'MELO3C022560.2' => 'cme', 'MELO3C026187.2' => 'cme', 'MELO3C026286.2' => 'cme', 'MELO3C032854.2' => 'cme', 'Migut.H02495' => 'egut', 'Migut.I00561' => 'egut', 'Migut.K01015' => 'egut', 'Migut.K01016' => 'egut', 'Migut.L00743' => 'egut', 'Migut.L00744' => 'egut', 'Migut.L00746' => 'egut', 'Migut.L00798' => 'egut', 'Migut.L00799' => 'egut', 'Migut.N02096' => 'egut', 'MSTRG.11259' => 'ama', 'MSTRG.23142' => 'ama', 'MSTRG.2499' => 'ama', 'Nitab4.5_0000003g0730' => 'nta', 'Nitab4.5_0000137g0020' => 'nta', 'Nitab4.5_0000721g0210' => 'nta', 'Nitab4.5_0000723g0050' => 'nta', 'Nitab4.5_0000913g0070' => 'nta', 'Nitab4.5_0001332g0040' => 'nta', 'Nitab4.5_0001771g0050' => 'nta', 'Nitab4.5_0001918g0050' => 'nta', 'Nitab4.5_0002686g0030' => 'nta', 'Nitab4.5_0003156g0020' => 'nta', 'Nitab4.5_0003383g0040' => 'nta', 'Nitab4.5_0003918g0010' => 'nta', 'Nitab4.5_0006760g0010' => 'nta', 'Nn1g05981' => 'nnu', 'Nn1g06288' => 'nnu', 'Nn3g16371' => 'nnu', 'Nn3g16786' => 'nnu', 'Nn4g22232' => 'nnu', 'Oeu005144.1' => 'oeu', 'Oeu005145.1' => 'oeu', 'Oeu011348.1' => 'oeu', 'Oeu016415.1' => 'oeu', 'Oeu023501.1' => 'oeu', 'Oeu044473.1' => 'oeu', 'Oeu048892.2' => 'oeu', 'Os01g0549200' => 'osa', 'Os02g0469300' => 'osa', 'Os04g0311100' => 'osa', 'Os06g0474900' => 'osa', 'Os10g0181700' => 'osa', 'Os11g0454800' => 'osa', 'Peaxi162Scf00037g00714' => 'pax', 'Peaxi162Scf00084g01217' => 'pax', 'Peaxi162Scf00257g00217' => 'pax', 'Peaxi162Scf00516g00215' => 'pax', 'Peaxi162Scf00689g00123' => 'pax', 'PGR044G2719' => 'pgr', 'PGR083G1360' => 'pgr', 'PGR102G2849' => 'pgr', 'PGR119G2534' => 'pgr', 'PGSC0003DMG400003538' => 'stu', 'PGSC0003DMG400028138' => 'stu', 'PGSC0003DMG400031732' => 'stu', 'PGSC0003DMG400038165' => 'stu', 'Phvul.002G284600' => 'pvu', 'Phvul.003G258200' => 'pvu', 'Phvul.009G176500' => 'pvu', 'Potri.003G167201' => 'ptr', 'Potri.005G118400' => 'ptr', 'Potri.012G089000' => 'ptr', 'Potri.012G102800' => 'ptr', 'Potri.015G079400' => 'ptr', 'Potri.015G100900' => 'ptr', 'Pp3c14_9810' => 'ppa', 'Pp3c15_10450' => 'ppa', 'Pp3c20_19150' => 'ppa', 'Pp3c23_12740' => 'ppa', 'Pp3c23_6310' => 'ppa', 'Pp3c24_3720' => 'ppa', 'Pp3c27_2580' => 'ppa', 'Pp3c9_8990' => 'ppa', 'PRCOL_00002854' => 'pco', 'Prupe.1G221200' => 'ppe', 'Prupe.3G289000' => 'ppe', 'Prupe.5G147000' => 'ppe', 'Prupe.6G157300' => 'ppe', 'Prupe.7G163400' => 'ppe', 'Psat0s2177g0040' => 'psa', 'Psat3g174760' => 'psa', 'Psat3g192160' => 'psa', 'Psat4g058520' => 'psa', 'Psat4g096840' => 'psa', 'Psat7g037320' => 'psa', 'PSO017G1274' => 'pso', 'PSO017G5166' => 'pso', 'PSO063G4558' => 'pso', 'PSO170G4458' => 'pso', 'PSO170G5005' => 'pso', 'PSO210G6156' => 'pso', 'PSO210G6635' => 'pso', 'PSO210G7397' => 'pso', 'PSO210G7700' => 'pso', 'PSO455G0035' => 'pso', 'PSO455G0180' => 'pso', 'PSO478G4515' => 'pso', 'PSO832G1305' => 'pso', 'PSO832G3489' => 'pso', 'QL02p075247' => 'qlo', 'QL03p051148' => 'qlo', 'QL05p010313' => 'qlo', 'QL06p034627' => 'qlo', 'QL10p001889' => 'qlo', 'QL10p010846' => 'qlo', 'RcHm_v2.0_Chr1g0350621' => 'rch', 'RcHm_v2.0_Chr1g0350641' => 'rch', 'RcHm_v2.0_Chr2g0092891' => 'rch', 'RcHm_v2.0_Chr2g0100251' => 'rch', 'RcHm_v2.0_Chr2g0158661' => 'rch', 'RcHm_v2.0_Chr2g0172741' => 'rch', 'RcHm_v2.0_Chr4g0429571' => 'rch', 'RcHm_v2.0_Chr5g0042471' => 'rch', 'RcHm_v2.0_Chr7g0189451' => 'rch', 'Rhsim08G0052000' => 'rsi', 'Rhsim08G0174400' => 'rsi', 'Rhsim08G0193200' => 'rsi', 'Rhsim10G0214800' => 'rsi', 'Rhsim10G0214900' => 'rsi', 'Rhsim10G0215000' => 'rsi', 'Rhsim12G0022900' => 'rsi', 'Rhsim12G0177500' => 'rsi', 'Rhsim12G0177700' => 'rsi', 'Sabra03G0122600' => 'sbr', 'Sabra05G0097400' => 'sbr', 'Sabra12G0064100' => 'sbr', 'Sabra15G0121300' => 'sbr', 'SalBow2G0642' => 'sbo', 'SalBow5G2667' => 'sbo', 'SalBow5G4873' => 'sbo', 'SalBow8G2395' => 'sbo', 'Sc03g0003290' => 'sci', 'Sc10g0010130' => 'sci', 'Sc22g0003650' => 'sci', 'Sed0001603' => 'sed', 'Sed0004259' => 'sed', 'Sed0006789' => 'sed', 'Sed0011838' => 'sed', 'Sed0012964' => 'sed', 'Sed0016383' => 'sed', 'Sed0019010' => 'sed', 'Sed0020188' => 'sed', 'SEGI_04702' => 'sgi', 'SEGI_17231' => 'sgi', 'SEGI_18877' => 'sgi', 'SEGI_25196' => 'sgi', 'SEGI_25515' => 'sgi', 'SEGI_28445' => 'sgi', 'SEGI_37452' => 'sgi', 'SGA_v2.0_scaffold188G40336' => 'sas', 'SGA_v2.0_scaffold228G43247' => 'sas', 'SGA_v2.0_scaffold280G46853' => 'sas', 'SGA_v2.0_scaffold34G13808' => 'sas', 'SGA_v2.0_scaffold40G15576' => 'sas', 'SGA_v2.0_scaffold611G53188' => 'sas', 'SGA_v2.0_scaffold78G25461' => 'sas', 'SGA_v2.0_scaffold90G27888' => 'sas', 'SHI08601' => 'shi', 'SHI08606' => 'shi', 'SHI17117' => 'shi', 'SHI17119' => 'shi', 'SMO118G0201' => 'smo', 'SMO169G0247' => 'smo', 'SMO176G0006' => 'smo', 'SMO176G0015' => 'smo', 'SMO202G0006' => 'smo', 'SMO240G0050' => 'smo', 'SMO286G0009' => 'smo', 'SMO338G0033' => 'smo', 'SMO356G0533' => 'smo', 'SMO364G0382' => 'smo', 'SMO367G0166' => 'smo', 'SMO367G1098' => 'smo', 'Solyc01g009920.3' => 'sly', 'Solyc01g099300.3' => 'sly', 'Solyc02g084700.3' => 'sly', 'Solyc03g097520.3' => 'sly', 'Solyc06g071580.3' => 'sly', 'Solyc10g081760.3' => 'sly', 'Sopen01g005480' => 'spe', 'Sopen01g042850' => 'spe', 'Sopen02g029370' => 'spe', 'Sopen03g028280' => 'spe', 'Sopen06g027870' => 'spe', 'Sopen10g032270' => 'spe', 'Sp5g18180' => 'spa', 'Sp6g12880' => 'spa', 'Sp6g30850' => 'spa', 'Sp7g22960' => 'spa', 'Sp7g34010' => 'spa', 'SpUn1326_0010' => 'spa', 'TAR371G0242' => 'tar', 'TAR622G0638' => 'tar', 'TAR628G1548' => 'tar', 'TAR629G1079' => 'tar', 'TAR629G3413' => 'tar', 'THA.LOC104804249' => 'tha', 'THA.LOC104808315' => 'tha', 'THA.LOC104809238' => 'tha', 'THA.LOC104825484' => 'tha', 'Thecc.01G025500' => 'tca', 'Thecc.03G015800' => 'tca', 'Thecc.03G018000' => 'tca', 'Thecc.03G134800' => 'tca', 'Thecc.04G014700' => 'tca', 'Thhalv10006991m.g' => 'esa', 'Thhalv10012707m.g' => 'esa', 'Thhalv10015739m.g' => 'esa', 'Thhalv10024553m.g' => 'esa', 'Thhalv10024673m.g' => 'esa', 'Thhalv10029187m.g' => 'esa', 'TPR.G12971' => 'tpr', 'TPR.G29396' => 'tpr', 'TPR.G33376' => 'tpr', 'TPR.G35508' => 'tpr', 'TPR.G35516' => 'tpr', 'TPR.G37317' => 'tpr', 'TPR.G37389' => 'tpr', 'TPR.G37523' => 'tpr', 'TPR.G559' => 'tpr', 'TWI14G0070' => 'twi', 'TWI14G0729' => 'twi', 'TWI18G0596' => 'twi', 'TWI39G0780' => 'twi', 'TWI39G0850' => 'twi', 'TWI73G1052' => 'twi', 'unitig_52.g17485' => 'ugi', 'unitig_61.g26355' => 'ugi', 'vmacro01040' => 'vma', 'vmacro16731' => 'vma', 'vmacro18270' => 'vma', 'vmacro19142' => 'vma', 'vmacro19407' => 'vma', 'vmacro19408' => 'vma', 'vmacro21899' => 'vma', 'vmacro21900' => 'vma', 'vmacro21901' => 'vma', 'VMungo0251G0490' => 'vmu', 'VMungo0251G1748' => 'vmu', 'VMungo1309G0421' => 'vmu', 'Zm00001eb086500' => 'zma', 'Zm00001eb150680' => 'zma', 'Zm00001eb162330' => 'zma', 'Zm00001eb203130' => 'zma', 'Zm00001eb369480' => 'zma', 'Zm00001eb382340' => 'zma', 'Zm00001eb416360' => 'zma' ), 'gf_id' => 'HOM05D000902', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000902' ), 'data_identifier' => 'HOM05D000902', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000902', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '663', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02470' => 'bna', 'A01p16260' => 'bna', 'A02p01680' => 'bna', 'A03p16600' => 'bna', 'A03p55660' => 'bna', 'A03p64160' => 'bna', 'A03p64170' => 'bna', 'A08p31900' => 'bna', 'A09p59530' => 'bna', 'A10p08230' => 'bna', 'A10p25090' => 'bna', 'Aa31LG3G7100' => 'aar', 'Aa31LG3G7110' => 'aar', 'Aa31LG6G13160' => 'aar', 'Aa31LG7G10770' => 'aar', 'Aa31LG7G3830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2723' => 'aag', 'Actinidia08045' => 'ach', 'Actinidia08888' => 'ach', 'Actinidia18333' => 'ach', 'Actinidia19334' => 'ach', 'Actinidia25552' => 'ach', 'Actinidia26089' => 'ach', 'Actinidia30615' => 'ach', 'Actinidia30616' => 'ach', 'Actinidia33083' => 'ach', 'Actinidia35762' => 'ach', 'Ah.02g110620' => 'amhyb', 'Ah.11g046390' => 'amhyb', 'AL1G31670' => 'aly', 'AL6G23730' => 'aly', 'AL7G14740' => 'aly', 'AL7G14750' => 'aly', 'AL7G14760' => 'aly', 'AL7G28220' => 'aly', 'AL8G24940' => 'aly', 'Aqoxy3G01665' => 'aox', 'Aqoxy3G02853' => 'aox', 'Aqoxy5G01513' => 'aox', 'Aqoxy5G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8SKA4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ75LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKDA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0LJZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7REX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZP4YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWX7I5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2QKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS0L9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPCD8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q161UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC7XCF' => 'arhy', 'AT1G19100' => 'ath', 'AT4G24970' => 'ath', 'AT4G36270' => 'ath', 'AT4G36280' => 'ath', 'AT4G36290' => 'ath', 'AT5G13130' => 'ath', 'AT5G50780' => 'ath', 'ATR0582G266' => 'atr', 'ATR0661G195' => 'atr', 'ATR1152G031' => 'atr', 'Atru.chr11.2382' => 'acertr', 'Atru.chr12.2337' => 'acertr', 'Atru.chr3.744' => 'acertr', 'Atru.chr6.1870' => 'acertr', 'Atru.chr9.2515' => 'acertr', 'AUR62004120' => 'cqu', 'AUR62005667' => 'cqu', 'AUR62007634' => 'cqu', 'AUR62008186' => 'cqu', 'AUR62008187' => 'cqu', 'AUR62008188' => 'cqu', 'AUR62027954' => 'cqu', 'AUR62028766' => 'cqu', 'AUR62028767' => 'cqu', 'AUR62028768' => 'cqu', 'AUR62028886' => 'cqu', 'AUR62029563' => 'cqu', 'AUR62038832' => 'cqu', 'BcaB01g04149' => 'bca', 'BcaB03g12940' => 'bca', 'BcaB03g13090' => 'bca', 'BcaB03g14466' => 'bca', 'BcaB05g24035' => 'bca', 'BcaC01g06050' => 'bca', 'BcaC04g19148' => 'bca', 'BcaC04g20761' => 'bca', 'BcaC06g32845' => 'bca', 'BcaC07g41274' => 'bca', 'BcaC09g50827' => 'bca', 'BcaNung00741' => 'bca', 'BcaNung00742' => 'bca', 'BcaNung01859' => 'bca', 'BcaNung03985' => 'bca', 'BcaNung03989' => 'bca', 'BcaNung05661' => 'bca', 'BolC1t00257H' => 'bol', 'BolC1t01956H' => 'bol', 'BolC2t06534H' => 'bol', 'BolC3t14334H' => 'bol', 'BolC5t30451H' => 'bol', 'BolC7t45880H' => 'bol', 'BolC7t46586H' => 'bol', 'BolC8t49301H' => 'bol', 'BolC8t51837H' => 'bol', 'BolC9t56822H' => 'bol', 'BolC9t59235H' => 'bol', 'BraA01t00234Z' => 'bra', 'BraA01t01563Z' => 'bra', 'BraA02t05147Z' => 'bra', 'BraA03t10947Z' => 'bra', 'BraA03t14633Z' => 'bra', 'BraA08t35112Z' => 'bra', 'BraA09t41330Z' => 'bra', 'BraA10t44570Z' => 'bra', 'C01p02670' => 'bna', 'C01p20260' => 'bna', 'C02p05890' => 'bna', 'C03p19530' => 'bna', 'C05p17470' => 'bna', 'C07p53900' => 'bna', 'C07p61630' => 'bna', 'C08p16800' => 'bna', 'C08p42810' => 'bna', 'C09p39480' => 'bna', 'C09p63980' => 'bna', 'CAN.G1001.7' => 'can', 'CAN.G1034.55' => 'can', 'CAN.G143.7' => 'can', 'CAN.G3340.1' => 'can', 'CAN.G358.19' => 'can', 'CAN.G373.2' => 'can', 'CAN.G674.16' => 'can', 'CAN.G674.17' => 'can', 'CAN.G674.18' => 'can', 'CAN.G732.2' => 'can', 'CAN.G732.3' => 'can', 'CAN.G993.39' => 'can', 'CANSAT01G2052' => 'cansat', 'CANSAT80G0070' => 'cansat', 'CANSAT80G0483' => 'cansat', 'CANSAT80G0625' => 'cansat', 'CARHR019690' => 'chi', 'CARHR080280' => 'chi', 'CARHR152750' => 'chi', 'CARHR152760' => 'chi', 'CARHR152770' => 'chi', 'CARHR200340' => 'chi', 'CARHR232370' => 'chi', 'CARHR244670' => 'chi', 'CARHR244680' => 'chi', 'CARHR257520' => 'chi', 'Carub.0001s1872' => 'cru', 'Carub.0006s1130' => 'cru', 'Carub.0007s0396' => 'cru', 'Carub.0007s0397' => 'cru', 'Carub.0007s1608' => 'cru', 'Carub.0008s1068' => 'cru', 'Carub.0008s1077' => 'cru', 'Ca_16158_v3' => 'car', 'Ca_17571_v3' => 'car', 'Ca_21936_v3' => 'car', 'Ca_22350_v3' => 'car', 'CBR_g22445' => 'cbr', 'CBR_g26290' => 'cbr', 'Cc04_g09610' => 'ccan', 'Cc04_g12280' => 'ccan', 'Cc07_g10230' => 'ccan', 'CDE02G0093' => 'cde', 'CDE02G0701' => 'cde', 'CDE04G1050' => 'cde', 'CDE05G1833' => 'cde', 'CDE05G3058' => 'cde', 'CDE05G3380' => 'cde', 'CDE06G0536' => 'cde', 'Cfa006923' => 'cfa', 'Cfa009402' => 'cfa', 'Cfa018751' => 'cfa', 'Cfa019164' => 'cfa', 'Cfa022935' => 'cfa', 'Ciclev10019081m.g' => 'ccl', 'Ciclev10025076m.g' => 'ccl', 'Ciclev10030712m.g' => 'ccl', 'Ciclev10033760m.g' => 'ccl', 'CiPaw.05G105600' => 'cil', 'CiPaw.08G136700' => 'cil', 'CiPaw.11G003900' => 'cil', 'CiPaw.11G023700' => 'cil', 'CiPaw.12G003700' => 'cil', 'ClCG06G017100' => 'cla', 'ClCG06G018110' => 'cla', 'ClCG07G008800' => 'cla', 'ClCG07G015330' => 'cla', 'COL.COLO4_13698' => 'col', 'COL.COLO4_16659' => 'col', 'COL.COLO4_21986' => 'col', 'COL.COLO4_24049' => 'col', 'COL.COLO4_29061' => 'col', 'COL.COLO4_29075' => 'col', 'COL.COLO4_30094' => 'col', 'Cpa.g.c33689' => 'cpa', 'Cpa.g.sc108.39' => 'cpa', 'Cpa.g.sc108.41' => 'cpa', 'Cpa.g.sc1163.1' => 'cpa', 'Cpa.g.sc4.155' => 'cpa', 'Cpa.g.sc6.194' => 'cpa', 'CsaV3_1G000340' => 'csa', 'CsaV3_1G001400' => 'csa', 'CsaV3_4G002220' => 'csa', 'CsaV3_4G005370' => 'csa', 'CSS0007487' => 'camsi', 'CSS0008066' => 'camsi', 'CSS0009120' => 'camsi', 'CSS0015512' => 'camsi', 'CSS0022409' => 'camsi', 'CSS0025358' => 'camsi', 'CSS0044547' => 'camsi', 'DCAR_013057' => 'dca', 'DCAR_015058' => 'dca', 'DCAR_016027' => 'dca', 'DCAR_017327' => 'dca', 'DCAR_020743' => 'dca', 'DCAR_026157' => 'dca', 'DCAR_032339' => 'dca', 'DCAR_032340' => 'dca', 'Dinv11200' => 'din', 'Dinv11201' => 'din', 'Dinv20631' => 'din', 'Dinv23182' => 'din', 'Dinv33466' => 'din', 'Dinv33583' => 'din', 'Dinv38565' => 'din', 'Duzib068G0200' => 'dzi', 'Duzib147G0132' => 'dzi', 'Duzib147G0635' => 'dzi', 'Duzib205G1670' => 'dzi', 'Duzib251G0606' => 'dzi', 'ECA232G3336' => 'eca', 'ECA232G3763' => 'eca', 'ECA232G4845' => 'eca', 'ECA234G1607' => 'eca', 'ECA246G0932' => 'eca', 'ECA247G0781' => 'eca', 'ECA247G1932' => 'eca', 'ECA247G2079' => 'eca', 'ECA247G3338' => 'eca', 'ECA247G4115' => 'eca', 'EL10Ac3g06552' => 'bvu', 'EL10Ac5g10721' => 'bvu', 'EL10Ac5g10722' => 'bvu', 'EL10Ac5g10723' => 'bvu', 'EL10Ac5g11361' => 'bvu', 'EL10Ac6g13553' => 'bvu', 'EL10As8g23872' => 'bvu', 'Eucgr.B00250' => 'egr', 'Eucgr.B00251' => 'egr', 'Eucgr.B03533' => 'egr', 'Eucgr.I02381' => 'egr', 'Eucgr.K02700' => 'egr', 'FAN02G0174' => 'fan', 'FAN02G3146' => 'fan', 'FAN04G1672' => 'fan', 'FAN04G2273' => 'fan', 'FAN05G2791' => 'fan', 'FAN05G4035' => 'fan', 'FAN07G0834' => 'fan', 'FAN08G1198' => 'fan', 'FAN09G4182' => 'fan', 'FAN12G0496' => 'fan', 'FAN13G1027' => 'fan', 'FAN13G2951' => 'fan', 'FAN14G0705' => 'fan', 'FAN14G0720' => 'fan', 'FAN17G0201' => 'fan', 'FAN17G2665' => 'fan', 'FAN18G1456' => 'fan', 'FAN18G1525' => 'fan', 'FAN18G3500' => 'fan', 'FAN28G2670' => 'fan', 'FvH4_1g12391' => 'fve', 'FvH4_4g23220' => 'fve', 'FvH4_5g08810' => 'fve', 'FvH4_5g28960' => 'fve', 'FvH4_6g42820' => 'fve', 'FvH4_6g51110' => 'fve', 'Glyma.02G051802' => 'gma', 'Glyma.04G185300' => 'gma', 'Glyma.05G202900' => 'gma', 'Glyma.08G010300' => 'gma', 'Glyma.16G131900' => 'gma', 'Glyma.17G087900' => 'gma', 'Gohir.A07G048600' => 'ghi', 'Gohir.A11G179000' => 'ghi', 'Gohir.A12G140900' => 'ghi', 'Gohir.A12G140950' => 'ghi', 'Gohir.A12G191700' => 'ghi', 'Gohir.A13G086300' => 'ghi', 'Gohir.D07G052900' => 'ghi', 'Gohir.D11G186600' => 'ghi', 'Gohir.D12G145575' => 'ghi', 'Gohir.D12G145650' => 'ghi', 'Gohir.D12G145725' => 'ghi', 'Gohir.D12G194050' => 'ghi', 'Gohir.D13G091800' => 'ghi', 'Gorai.001G055900' => 'gra', 'Gorai.007G198400' => 'gra', 'Gorai.008G157000' => 'gra', 'Gorai.008G157100' => 'gra', 'Gorai.008G208700' => 'gra', 'Gorai.010G138700' => 'gra', 'GSVIVG01000977001' => 'vvi', 'GSVIVG01007708001' => 'vvi', 'GSVIVG01008587001' => 'vvi', 'GSVIVG01018849001' => 'vvi', 'GSVIVG01032432001' => 'vvi', 'HanXRQChr02g0034131' => 'han', 'HanXRQChr02g0035981' => 'han', 'HanXRQChr02g0035991' => 'han', 'HanXRQChr05g0155611' => 'han', 'HanXRQChr05g0155621' => 'han', 'HanXRQChr08g0236501' => 'han', 'HanXRQChr09g0261321' => 'han', 'HanXRQChr09g0272081' => 'han', 'HanXRQChr10g0310741' => 'han', 'HanXRQChr11g0325591' => 'han', 'HanXRQChr12g0385691' => 'han', 'HanXRQChr13g0387801' => 'han', 'HanXRQChr15g0463011' => 'han', 'Haze_03826' => 'cav', 'Haze_03827' => 'cav', 'Haze_07183' => 'cav', 'Haze_07537' => 'cav', 'Haze_07539' => 'cav', 'Haze_12461' => 'cav', 'Haze_16115' => 'cav', 'Haze_16808' => 'cav', 'Haze_18531' => 'cav', 'Hma1.2p1_0046F.1_g026700' => 'hma', 'Hma1.2p1_0046F.1_g026710' => 'hma', 'Hma1.2p1_0168F.1_g074340' => 'hma', 'Hma1.2p1_0266F.1_g107030' => 'hma', 'Hma1.2p1_0266F.1_g107060' => 'hma', 'Hma1.2p1_0275F.1_g110510' => 'hma', 'Hma1.2p1_0592F.1_g185490' => 'hma', 'Hma1.2p1_0592F.1_g185500' => 'hma', 'Hma1.2p1_0592F.1_g185510' => 'hma', 'Hma1.2p1_0592F.1_g185520' => 'hma', 'Hma1.2p1_0592F.1_g185530' => 'hma', 'Hma1.2p1_0818F.1_g223450' => 'hma', 'HPP92_009708' => 'vpl', 'HPP92_009793' => 'vpl', 'HPP92_009796' => 'vpl', 'HPP92_009797' => 'vpl', 'HPP92_014940' => 'vpl', 'HPP92_014988' => 'vpl', 'Hund02463' => 'sun', 'Hund02760' => 'sun', 'Hund05071' => 'sun', 'Hund10108' => 'sun', 'Hund11204' => 'sun', 'Hund14016' => 'sun', 'Hund16464' => 'sun', 'Lalb_Chr09g0333391' => 'lal', 'Lalb_Chr11g0070461' => 'lal', 'Lalb_Chr12g0201671' => 'lal', 'Lalb_Chr13g0297161' => 'lal', 'Lj1g0002823' => 'lja', 'Lj3C1074T6' => 'lonja', 'Lj4A212T28' => 'lonja', 'Lj4g0005516' => 'lja', 'Lj4g0013705' => 'lja', 'Lj4g0027865' => 'lja', 'Lj5C92G16' => 'lonja', 'Lj5C92T12' => 'lonja', 'Lj7C596T3' => 'lonja', 'Lj9A446G59' => 'lonja', 'Lj9A482G21' => 'lonja', 'Lsat_1_v5_gn_1_28261' => 'lsa', 'Lsat_1_v5_gn_1_28281' => 'lsa', 'Lsat_1_v5_gn_1_32721' => 'lsa', 'Lsat_1_v5_gn_4_151760' => 'lsa', 'Lsat_1_v5_gn_4_2120' => 'lsa', 'Lsat_1_v5_gn_4_75761' => 'lsa', 'Lsat_1_v5_gn_5_10920' => 'lsa', 'Manes.02G099900' => 'mes', 'Manes.11G096200' => 'mes', 'Manes.12G007200' => 'mes', 'Manes.14G048300' => 'mes', 'Manes.17G114700' => 'mes', 'Mapoly0002s0070' => 'mpo', 'Mapoly0029s0099' => 'mpo', 'MBI07_g24742_MAGBIO' => 'mbi', 'MBI10_g27988_MAGBIO' => 'mbi', 'MBI11_g13057_MAGBIO' => 'mbi', 'MD02G1137200' => 'mdo', 'MD06G1137200' => 'mdo', 'MD07G1122300' => 'mdo', 'MD09G1078200' => 'mdo', 'MD13G1123700' => 'mdo', 'MD14G1151900' => 'mdo', 'MD17G1030900' => 'mdo', 'MD17G1068200' => 'mdo', 'MD17G1068600' => 'mdo', 'Medtr3g077540' => 'mtr', 'Medtr4g105530' => 'mtr', 'Medtr8g076580' => 'mtr', 'Medtr8g076590' => 'mtr', 'Medtr8g096410' => 'mtr', 'MELO3C016411.2' => 'cme', 'MELO3C017780.2' => 'cme', 'MELO3C022560.2' => 'cme', 'MELO3C026187.2' => 'cme', 'MELO3C026286.2' => 'cme', 'MELO3C032854.2' => 'cme', 'Migut.H02495' => 'egut', 'Migut.I00561' => 'egut', 'Migut.K01015' => 'egut', 'Migut.K01016' => 'egut', 'Migut.L00743' => 'egut', 'Migut.L00744' => 'egut', 'Migut.L00746' => 'egut', 'Migut.L00798' => 'egut', 'Migut.L00799' => 'egut', 'Migut.N02096' => 'egut', 'MSTRG.11259' => 'ama', 'MSTRG.23142' => 'ama', 'MSTRG.2499' => 'ama', 'Nitab4.5_0000003g0730' => 'nta', 'Nitab4.5_0000137g0020' => 'nta', 'Nitab4.5_0000721g0210' => 'nta', 'Nitab4.5_0000723g0050' => 'nta', 'Nitab4.5_0000913g0070' => 'nta', 'Nitab4.5_0001332g0040' => 'nta', 'Nitab4.5_0001771g0050' => 'nta', 'Nitab4.5_0001918g0050' => 'nta', 'Nitab4.5_0002686g0030' => 'nta', 'Nitab4.5_0003156g0020' => 'nta', 'Nitab4.5_0003383g0040' => 'nta', 'Nitab4.5_0003918g0010' => 'nta', 'Nitab4.5_0006760g0010' => 'nta', 'Nn1g05981' => 'nnu', 'Nn1g06288' => 'nnu', 'Nn3g16371' => 'nnu', 'Nn3g16786' => 'nnu', 'Nn4g22232' => 'nnu', 'Oeu005144.1' => 'oeu', 'Oeu005145.1' => 'oeu', 'Oeu011348.1' => 'oeu', 'Oeu016415.1' => 'oeu', 'Oeu023501.1' => 'oeu', 'Oeu044473.1' => 'oeu', 'Oeu048892.2' => 'oeu', 'Os01g0549200' => 'osa', 'Os02g0469300' => 'osa', 'Os04g0311100' => 'osa', 'Os06g0474900' => 'osa', 'Os10g0181700' => 'osa', 'Os11g0454800' => 'osa', 'Peaxi162Scf00037g00714' => 'pax', 'Peaxi162Scf00084g01217' => 'pax', 'Peaxi162Scf00257g00217' => 'pax', 'Peaxi162Scf00516g00215' => 'pax', 'Peaxi162Scf00689g00123' => 'pax', 'PGR044G2719' => 'pgr', 'PGR083G1360' => 'pgr', 'PGR102G2849' => 'pgr', 'PGR119G2534' => 'pgr', 'PGSC0003DMG400003538' => 'stu', 'PGSC0003DMG400028138' => 'stu', 'PGSC0003DMG400031732' => 'stu', 'PGSC0003DMG400038165' => 'stu', 'Phvul.002G284600' => 'pvu', 'Phvul.003G258200' => 'pvu', 'Phvul.009G176500' => 'pvu', 'Potri.003G167201' => 'ptr', 'Potri.005G118400' => 'ptr', 'Potri.012G089000' => 'ptr', 'Potri.012G102800' => 'ptr', 'Potri.015G079400' => 'ptr', 'Potri.015G100900' => 'ptr', 'Pp3c14_9810' => 'ppa', 'Pp3c15_10450' => 'ppa', 'Pp3c20_19150' => 'ppa', 'Pp3c23_12740' => 'ppa', 'Pp3c23_6310' => 'ppa', 'Pp3c24_3720' => 'ppa', 'Pp3c27_2580' => 'ppa', 'Pp3c9_8990' => 'ppa', 'PRCOL_00002854' => 'pco', 'Prupe.1G221200' => 'ppe', 'Prupe.3G289000' => 'ppe', 'Prupe.5G147000' => 'ppe', 'Prupe.6G157300' => 'ppe', 'Prupe.7G163400' => 'ppe', 'Psat0s2177g0040' => 'psa', 'Psat3g174760' => 'psa', 'Psat3g192160' => 'psa', 'Psat4g058520' => 'psa', 'Psat4g096840' => 'psa', 'Psat7g037320' => 'psa', 'PSO017G1274' => 'pso', 'PSO017G5166' => 'pso', 'PSO063G4558' => 'pso', 'PSO170G4458' => 'pso', 'PSO170G5005' => 'pso', 'PSO210G6156' => 'pso', 'PSO210G6635' => 'pso', 'PSO210G7397' => 'pso', 'PSO210G7700' => 'pso', 'PSO455G0035' => 'pso', 'PSO455G0180' => 'pso', 'PSO478G4515' => 'pso', 'PSO832G1305' => 'pso', 'PSO832G3489' => 'pso', 'QL02p075247' => 'qlo', 'QL03p051148' => 'qlo', 'QL05p010313' => 'qlo', 'QL06p034627' => 'qlo', 'QL10p001889' => 'qlo', 'QL10p010846' => 'qlo', 'RcHm_v2.0_Chr1g0350621' => 'rch', 'RcHm_v2.0_Chr1g0350641' => 'rch', 'RcHm_v2.0_Chr2g0092891' => 'rch', 'RcHm_v2.0_Chr2g0100251' => 'rch', 'RcHm_v2.0_Chr2g0158661' => 'rch', 'RcHm_v2.0_Chr2g0172741' => 'rch', 'RcHm_v2.0_Chr4g0429571' => 'rch', 'RcHm_v2.0_Chr5g0042471' => 'rch', 'RcHm_v2.0_Chr7g0189451' => 'rch', 'Rhsim08G0052000' => 'rsi', 'Rhsim08G0174400' => 'rsi', 'Rhsim08G0193200' => 'rsi', 'Rhsim10G0214800' => 'rsi', 'Rhsim10G0214900' => 'rsi', 'Rhsim10G0215000' => 'rsi', 'Rhsim12G0022900' => 'rsi', 'Rhsim12G0177500' => 'rsi', 'Rhsim12G0177700' => 'rsi', 'Sabra03G0122600' => 'sbr', 'Sabra05G0097400' => 'sbr', 'Sabra12G0064100' => 'sbr', 'Sabra15G0121300' => 'sbr', 'SalBow2G0642' => 'sbo', 'SalBow5G2667' => 'sbo', 'SalBow5G4873' => 'sbo', 'SalBow8G2395' => 'sbo', 'Sc03g0003290' => 'sci', 'Sc10g0010130' => 'sci', 'Sc22g0003650' => 'sci', 'Sed0001603' => 'sed', 'Sed0004259' => 'sed', 'Sed0006789' => 'sed', 'Sed0011838' => 'sed', 'Sed0012964' => 'sed', 'Sed0016383' => 'sed', 'Sed0019010' => 'sed', 'Sed0020188' => 'sed', 'SEGI_04702' => 'sgi', 'SEGI_17231' => 'sgi', 'SEGI_18877' => 'sgi', 'SEGI_25196' => 'sgi', 'SEGI_25515' => 'sgi', 'SEGI_28445' => 'sgi', 'SEGI_37452' => 'sgi', 'SGA_v2.0_scaffold188G40336' => 'sas', 'SGA_v2.0_scaffold228G43247' => 'sas', 'SGA_v2.0_scaffold280G46853' => 'sas', 'SGA_v2.0_scaffold34G13808' => 'sas', 'SGA_v2.0_scaffold40G15576' => 'sas', 'SGA_v2.0_scaffold611G53188' => 'sas', 'SGA_v2.0_scaffold78G25461' => 'sas', 'SGA_v2.0_scaffold90G27888' => 'sas', 'SHI08601' => 'shi', 'SHI08606' => 'shi', 'SHI17117' => 'shi', 'SHI17119' => 'shi', 'SMO118G0201' => 'smo', 'SMO169G0247' => 'smo', 'SMO176G0006' => 'smo', 'SMO176G0015' => 'smo', 'SMO202G0006' => 'smo', 'SMO240G0050' => 'smo', 'SMO286G0009' => 'smo', 'SMO338G0033' => 'smo', 'SMO356G0533' => 'smo', 'SMO364G0382' => 'smo', 'SMO367G0166' => 'smo', 'SMO367G1098' => 'smo', 'Solyc01g009920.3' => 'sly', 'Solyc01g099300.3' => 'sly', 'Solyc02g084700.3' => 'sly', 'Solyc03g097520.3' => 'sly', 'Solyc06g071580.3' => 'sly', 'Solyc10g081760.3' => 'sly', 'Sopen01g005480' => 'spe', 'Sopen01g042850' => 'spe', 'Sopen02g029370' => 'spe', 'Sopen03g028280' => 'spe', 'Sopen06g027870' => 'spe', 'Sopen10g032270' => 'spe', 'Sp5g18180' => 'spa', 'Sp6g12880' => 'spa', 'Sp6g30850' => 'spa', 'Sp7g22960' => 'spa', 'Sp7g34010' => 'spa', 'SpUn1326_0010' => 'spa', 'TAR371G0242' => 'tar', 'TAR622G0638' => 'tar', 'TAR628G1548' => 'tar', 'TAR629G1079' => 'tar', 'TAR629G3413' => 'tar', 'THA.LOC104804249' => 'tha', 'THA.LOC104808315' => 'tha', 'THA.LOC104809238' => 'tha', 'THA.LOC104825484' => 'tha', 'Thecc.01G025500' => 'tca', 'Thecc.03G015800' => 'tca', 'Thecc.03G018000' => 'tca', 'Thecc.03G134800' => 'tca', 'Thecc.04G014700' => 'tca', 'Thhalv10006991m.g' => 'esa', 'Thhalv10012707m.g' => 'esa', 'Thhalv10015739m.g' => 'esa', 'Thhalv10024553m.g' => 'esa', 'Thhalv10024673m.g' => 'esa', 'Thhalv10029187m.g' => 'esa', 'TPR.G12971' => 'tpr', 'TPR.G29396' => 'tpr', 'TPR.G33376' => 'tpr', 'TPR.G35508' => 'tpr', 'TPR.G35516' => 'tpr', 'TPR.G37317' => 'tpr', 'TPR.G37389' => 'tpr', 'TPR.G37523' => 'tpr', 'TPR.G559' => 'tpr', 'TWI14G0070' => 'twi', 'TWI14G0729' => 'twi', 'TWI18G0596' => 'twi', 'TWI39G0780' => 'twi', 'TWI39G0850' => 'twi', 'TWI73G1052' => 'twi', 'unitig_52.g17485' => 'ugi', 'unitig_61.g26355' => 'ugi', 'vmacro01040' => 'vma', 'vmacro16731' => 'vma', 'vmacro18270' => 'vma', 'vmacro19142' => 'vma', 'vmacro19407' => 'vma', 'vmacro19408' => 'vma', 'vmacro21899' => 'vma', 'vmacro21900' => 'vma', 'vmacro21901' => 'vma', 'VMungo0251G0490' => 'vmu', 'VMungo0251G1748' => 'vmu', 'VMungo1309G0421' => 'vmu', 'Zm00001eb086500' => 'zma', 'Zm00001eb150680' => 'zma', 'Zm00001eb162330' => 'zma', 'Zm00001eb203130' => 'zma', 'Zm00001eb369480' => 'zma', 'Zm00001eb382340' => 'zma', 'Zm00001eb416360' => 'zma' ) $gf_id = 'HOM05D000902' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000902' ) $data_identifier = 'HOM05D000902' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 13, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 10, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 6, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 9, 'hma' => (int) 12, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 4, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 6, 'ppa' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 6, 'rch' => (int) 9, 'rsi' => (int) 9, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 12, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 3, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416360' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000902', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '663', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02470' => 'bna', 'A01p16260' => 'bna', 'A02p01680' => 'bna', 'A03p16600' => 'bna', 'A03p55660' => 'bna', 'A03p64160' => 'bna', 'A03p64170' => 'bna', 'A08p31900' => 'bna', 'A09p59530' => 'bna', 'A10p08230' => 'bna', 'A10p25090' => 'bna', 'Aa31LG3G7100' => 'aar', 'Aa31LG3G7110' => 'aar', 'Aa31LG6G13160' => 'aar', 'Aa31LG7G10770' => 'aar', 'Aa31LG7G3830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2723' => 'aag', 'Actinidia08045' => 'ach', 'Actinidia08888' => 'ach', 'Actinidia18333' => 'ach', 'Actinidia19334' => 'ach', 'Actinidia25552' => 'ach', 'Actinidia26089' => 'ach', 'Actinidia30615' => 'ach', 'Actinidia30616' => 'ach', 'Actinidia33083' => 'ach', 'Actinidia35762' => 'ach', 'Ah.02g110620' => 'amhyb', 'Ah.11g046390' => 'amhyb', 'AL1G31670' => 'aly', 'AL6G23730' => 'aly', 'AL7G14740' => 'aly', 'AL7G14750' => 'aly', 'AL7G14760' => 'aly', 'AL7G28220' => 'aly', 'AL8G24940' => 'aly', 'Aqoxy3G01665' => 'aox', 'Aqoxy3G02853' => 'aox', 'Aqoxy5G01513' => 'aox', 'Aqoxy5G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8SKA4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ75LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKDA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0LJZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7REX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZP4YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWX7I5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2QKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS0L9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPCD8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q161UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC7XCF' => 'arhy', 'AT1G19100' => 'ath', 'AT4G24970' => 'ath', 'AT4G36270' => 'ath', 'AT4G36280' => 'ath', 'AT4G36290' => 'ath', 'AT5G13130' => 'ath', 'AT5G50780' => 'ath', 'ATR0582G266' => 'atr', 'ATR0661G195' => 'atr', 'ATR1152G031' => 'atr', 'Atru.chr11.2382' => 'acertr', 'Atru.chr12.2337' => 'acertr', 'Atru.chr3.744' => 'acertr', 'Atru.chr6.1870' => 'acertr', 'Atru.chr9.2515' => 'acertr', 'AUR62004120' => 'cqu', 'AUR62005667' => 'cqu', 'AUR62007634' => 'cqu', 'AUR62008186' => 'cqu', 'AUR62008187' => 'cqu', 'AUR62008188' => 'cqu', 'AUR62027954' => 'cqu', 'AUR62028766' => 'cqu', 'AUR62028767' => 'cqu', 'AUR62028768' => 'cqu', 'AUR62028886' => 'cqu', 'AUR62029563' => 'cqu', 'AUR62038832' => 'cqu', 'BcaB01g04149' => 'bca', 'BcaB03g12940' => 'bca', 'BcaB03g13090' => 'bca', 'BcaB03g14466' => 'bca', 'BcaB05g24035' => 'bca', 'BcaC01g06050' => 'bca', 'BcaC04g19148' => 'bca', 'BcaC04g20761' => 'bca', 'BcaC06g32845' => 'bca', 'BcaC07g41274' => 'bca', 'BcaC09g50827' => 'bca', 'BcaNung00741' => 'bca', 'BcaNung00742' => 'bca', 'BcaNung01859' => 'bca', 'BcaNung03985' => 'bca', 'BcaNung03989' => 'bca', 'BcaNung05661' => 'bca', 'BolC1t00257H' => 'bol', 'BolC1t01956H' => 'bol', 'BolC2t06534H' => 'bol', 'BolC3t14334H' => 'bol', 'BolC5t30451H' => 'bol', 'BolC7t45880H' => 'bol', 'BolC7t46586H' => 'bol', 'BolC8t49301H' => 'bol', 'BolC8t51837H' => 'bol', 'BolC9t56822H' => 'bol', 'BolC9t59235H' => 'bol', 'BraA01t00234Z' => 'bra', 'BraA01t01563Z' => 'bra', 'BraA02t05147Z' => 'bra', 'BraA03t10947Z' => 'bra', 'BraA03t14633Z' => 'bra', 'BraA08t35112Z' => 'bra', 'BraA09t41330Z' => 'bra', 'BraA10t44570Z' => 'bra', 'C01p02670' => 'bna', 'C01p20260' => 'bna', 'C02p05890' => 'bna', 'C03p19530' => 'bna', 'C05p17470' => 'bna', 'C07p53900' => 'bna', 'C07p61630' => 'bna', 'C08p16800' => 'bna', 'C08p42810' => 'bna', 'C09p39480' => 'bna', 'C09p63980' => 'bna', 'CAN.G1001.7' => 'can', 'CAN.G1034.55' => 'can', 'CAN.G143.7' => 'can', 'CAN.G3340.1' => 'can', 'CAN.G358.19' => 'can', 'CAN.G373.2' => 'can', 'CAN.G674.16' => 'can', 'CAN.G674.17' => 'can', 'CAN.G674.18' => 'can', 'CAN.G732.2' => 'can', 'CAN.G732.3' => 'can', 'CAN.G993.39' => 'can', 'CANSAT01G2052' => 'cansat', 'CANSAT80G0070' => 'cansat', 'CANSAT80G0483' => 'cansat', 'CANSAT80G0625' => 'cansat', 'CARHR019690' => 'chi', 'CARHR080280' => 'chi', 'CARHR152750' => 'chi', 'CARHR152760' => 'chi', 'CARHR152770' => 'chi', 'CARHR200340' => 'chi', 'CARHR232370' => 'chi', 'CARHR244670' => 'chi', 'CARHR244680' => 'chi', 'CARHR257520' => 'chi', 'Carub.0001s1872' => 'cru', 'Carub.0006s1130' => 'cru', 'Carub.0007s0396' => 'cru', 'Carub.0007s0397' => 'cru', 'Carub.0007s1608' => 'cru', 'Carub.0008s1068' => 'cru', 'Carub.0008s1077' => 'cru', 'Ca_16158_v3' => 'car', 'Ca_17571_v3' => 'car', 'Ca_21936_v3' => 'car', 'Ca_22350_v3' => 'car', 'CBR_g22445' => 'cbr', 'CBR_g26290' => 'cbr', 'Cc04_g09610' => 'ccan', 'Cc04_g12280' => 'ccan', 'Cc07_g10230' => 'ccan', 'CDE02G0093' => 'cde', 'CDE02G0701' => 'cde', 'CDE04G1050' => 'cde', 'CDE05G1833' => 'cde', 'CDE05G3058' => 'cde', 'CDE05G3380' => 'cde', 'CDE06G0536' => 'cde', 'Cfa006923' => 'cfa', 'Cfa009402' => 'cfa', 'Cfa018751' => 'cfa', 'Cfa019164' => 'cfa', 'Cfa022935' => 'cfa', 'Ciclev10019081m.g' => 'ccl', 'Ciclev10025076m.g' => 'ccl', 'Ciclev10030712m.g' => 'ccl', 'Ciclev10033760m.g' => 'ccl', 'CiPaw.05G105600' => 'cil', 'CiPaw.08G136700' => 'cil', 'CiPaw.11G003900' => 'cil', 'CiPaw.11G023700' => 'cil', 'CiPaw.12G003700' => 'cil', 'ClCG06G017100' => 'cla', 'ClCG06G018110' => 'cla', 'ClCG07G008800' => 'cla', 'ClCG07G015330' => 'cla', 'COL.COLO4_13698' => 'col', 'COL.COLO4_16659' => 'col', 'COL.COLO4_21986' => 'col', 'COL.COLO4_24049' => 'col', 'COL.COLO4_29061' => 'col', 'COL.COLO4_29075' => 'col', 'COL.COLO4_30094' => 'col', 'Cpa.g.c33689' => 'cpa', 'Cpa.g.sc108.39' => 'cpa', 'Cpa.g.sc108.41' => 'cpa', 'Cpa.g.sc1163.1' => 'cpa', 'Cpa.g.sc4.155' => 'cpa', 'Cpa.g.sc6.194' => 'cpa', 'CsaV3_1G000340' => 'csa', 'CsaV3_1G001400' => 'csa', 'CsaV3_4G002220' => 'csa', 'CsaV3_4G005370' => 'csa', 'CSS0007487' => 'camsi', 'CSS0008066' => 'camsi', 'CSS0009120' => 'camsi', 'CSS0015512' => 'camsi', 'CSS0022409' => 'camsi', 'CSS0025358' => 'camsi', 'CSS0044547' => 'camsi', 'DCAR_013057' => 'dca', 'DCAR_015058' => 'dca', 'DCAR_016027' => 'dca', 'DCAR_017327' => 'dca', 'DCAR_020743' => 'dca', 'DCAR_026157' => 'dca', 'DCAR_032339' => 'dca', 'DCAR_032340' => 'dca', 'Dinv11200' => 'din', 'Dinv11201' => 'din', 'Dinv20631' => 'din', 'Dinv23182' => 'din', 'Dinv33466' => 'din', 'Dinv33583' => 'din', 'Dinv38565' => 'din', 'Duzib068G0200' => 'dzi', 'Duzib147G0132' => 'dzi', 'Duzib147G0635' => 'dzi', 'Duzib205G1670' => 'dzi', 'Duzib251G0606' => 'dzi', 'ECA232G3336' => 'eca', 'ECA232G3763' => 'eca', 'ECA232G4845' => 'eca', 'ECA234G1607' => 'eca', 'ECA246G0932' => 'eca', 'ECA247G0781' => 'eca', 'ECA247G1932' => 'eca', 'ECA247G2079' => 'eca', 'ECA247G3338' => 'eca', 'ECA247G4115' => 'eca', 'EL10Ac3g06552' => 'bvu', 'EL10Ac5g10721' => 'bvu', 'EL10Ac5g10722' => 'bvu', 'EL10Ac5g10723' => 'bvu', 'EL10Ac5g11361' => 'bvu', 'EL10Ac6g13553' => 'bvu', 'EL10As8g23872' => 'bvu', 'Eucgr.B00250' => 'egr', 'Eucgr.B00251' => 'egr', 'Eucgr.B03533' => 'egr', 'Eucgr.I02381' => 'egr', 'Eucgr.K02700' => 'egr', 'FAN02G0174' => 'fan', 'FAN02G3146' => 'fan', 'FAN04G1672' => 'fan', 'FAN04G2273' => 'fan', 'FAN05G2791' => 'fan', 'FAN05G4035' => 'fan', 'FAN07G0834' => 'fan', 'FAN08G1198' => 'fan', 'FAN09G4182' => 'fan', 'FAN12G0496' => 'fan', 'FAN13G1027' => 'fan', 'FAN13G2951' => 'fan', 'FAN14G0705' => 'fan', 'FAN14G0720' => 'fan', 'FAN17G0201' => 'fan', 'FAN17G2665' => 'fan', 'FAN18G1456' => 'fan', 'FAN18G1525' => 'fan', 'FAN18G3500' => 'fan', 'FAN28G2670' => 'fan', 'FvH4_1g12391' => 'fve', 'FvH4_4g23220' => 'fve', 'FvH4_5g08810' => 'fve', 'FvH4_5g28960' => 'fve', 'FvH4_6g42820' => 'fve', 'FvH4_6g51110' => 'fve', 'Glyma.02G051802' => 'gma', 'Glyma.04G185300' => 'gma', 'Glyma.05G202900' => 'gma', 'Glyma.08G010300' => 'gma', 'Glyma.16G131900' => 'gma', 'Glyma.17G087900' => 'gma', 'Gohir.A07G048600' => 'ghi', 'Gohir.A11G179000' => 'ghi', 'Gohir.A12G140900' => 'ghi', 'Gohir.A12G140950' => 'ghi', 'Gohir.A12G191700' => 'ghi', 'Gohir.A13G086300' => 'ghi', 'Gohir.D07G052900' => 'ghi', 'Gohir.D11G186600' => 'ghi', 'Gohir.D12G145575' => 'ghi', 'Gohir.D12G145650' => 'ghi', 'Gohir.D12G145725' => 'ghi', 'Gohir.D12G194050' => 'ghi', 'Gohir.D13G091800' => 'ghi', 'Gorai.001G055900' => 'gra', 'Gorai.007G198400' => 'gra', 'Gorai.008G157000' => 'gra', 'Gorai.008G157100' => 'gra', 'Gorai.008G208700' => 'gra', 'Gorai.010G138700' => 'gra', 'GSVIVG01000977001' => 'vvi', 'GSVIVG01007708001' => 'vvi', 'GSVIVG01008587001' => 'vvi', 'GSVIVG01018849001' => 'vvi', 'GSVIVG01032432001' => 'vvi', 'HanXRQChr02g0034131' => 'han', 'HanXRQChr02g0035981' => 'han', 'HanXRQChr02g0035991' => 'han', 'HanXRQChr05g0155611' => 'han', 'HanXRQChr05g0155621' => 'han', 'HanXRQChr08g0236501' => 'han', 'HanXRQChr09g0261321' => 'han', 'HanXRQChr09g0272081' => 'han', 'HanXRQChr10g0310741' => 'han', 'HanXRQChr11g0325591' => 'han', 'HanXRQChr12g0385691' => 'han', 'HanXRQChr13g0387801' => 'han', 'HanXRQChr15g0463011' => 'han', 'Haze_03826' => 'cav', 'Haze_03827' => 'cav', 'Haze_07183' => 'cav', 'Haze_07537' => 'cav', 'Haze_07539' => 'cav', 'Haze_12461' => 'cav', 'Haze_16115' => 'cav', 'Haze_16808' => 'cav', 'Haze_18531' => 'cav', 'Hma1.2p1_0046F.1_g026700' => 'hma', 'Hma1.2p1_0046F.1_g026710' => 'hma', 'Hma1.2p1_0168F.1_g074340' => 'hma', 'Hma1.2p1_0266F.1_g107030' => 'hma', 'Hma1.2p1_0266F.1_g107060' => 'hma', 'Hma1.2p1_0275F.1_g110510' => 'hma', 'Hma1.2p1_0592F.1_g185490' => 'hma', 'Hma1.2p1_0592F.1_g185500' => 'hma', 'Hma1.2p1_0592F.1_g185510' => 'hma', 'Hma1.2p1_0592F.1_g185520' => 'hma', 'Hma1.2p1_0592F.1_g185530' => 'hma', 'Hma1.2p1_0818F.1_g223450' => 'hma', 'HPP92_009708' => 'vpl', 'HPP92_009793' => 'vpl', 'HPP92_009796' => 'vpl', 'HPP92_009797' => 'vpl', 'HPP92_014940' => 'vpl', 'HPP92_014988' => 'vpl', 'Hund02463' => 'sun', 'Hund02760' => 'sun', 'Hund05071' => 'sun', 'Hund10108' => 'sun', 'Hund11204' => 'sun', 'Hund14016' => 'sun', 'Hund16464' => 'sun', 'Lalb_Chr09g0333391' => 'lal', 'Lalb_Chr11g0070461' => 'lal', 'Lalb_Chr12g0201671' => 'lal', 'Lalb_Chr13g0297161' => 'lal', 'Lj1g0002823' => 'lja', 'Lj3C1074T6' => 'lonja', 'Lj4A212T28' => 'lonja', 'Lj4g0005516' => 'lja', 'Lj4g0013705' => 'lja', 'Lj4g0027865' => 'lja', 'Lj5C92G16' => 'lonja', 'Lj5C92T12' => 'lonja', 'Lj7C596T3' => 'lonja', 'Lj9A446G59' => 'lonja', 'Lj9A482G21' => 'lonja', 'Lsat_1_v5_gn_1_28261' => 'lsa', 'Lsat_1_v5_gn_1_28281' => 'lsa', 'Lsat_1_v5_gn_1_32721' => 'lsa', 'Lsat_1_v5_gn_4_151760' => 'lsa', 'Lsat_1_v5_gn_4_2120' => 'lsa', 'Lsat_1_v5_gn_4_75761' => 'lsa', 'Lsat_1_v5_gn_5_10920' => 'lsa', 'Manes.02G099900' => 'mes', 'Manes.11G096200' => 'mes', 'Manes.12G007200' => 'mes', 'Manes.14G048300' => 'mes', 'Manes.17G114700' => 'mes', 'Mapoly0002s0070' => 'mpo', 'Mapoly0029s0099' => 'mpo', 'MBI07_g24742_MAGBIO' => 'mbi', 'MBI10_g27988_MAGBIO' => 'mbi', 'MBI11_g13057_MAGBIO' => 'mbi', 'MD02G1137200' => 'mdo', 'MD06G1137200' => 'mdo', 'MD07G1122300' => 'mdo', 'MD09G1078200' => 'mdo', 'MD13G1123700' => 'mdo', 'MD14G1151900' => 'mdo', 'MD17G1030900' => 'mdo', 'MD17G1068200' => 'mdo', 'MD17G1068600' => 'mdo', 'Medtr3g077540' => 'mtr', 'Medtr4g105530' => 'mtr', 'Medtr8g076580' => 'mtr', 'Medtr8g076590' => 'mtr', 'Medtr8g096410' => 'mtr', 'MELO3C016411.2' => 'cme', 'MELO3C017780.2' => 'cme', 'MELO3C022560.2' => 'cme', 'MELO3C026187.2' => 'cme', 'MELO3C026286.2' => 'cme', 'MELO3C032854.2' => 'cme', 'Migut.H02495' => 'egut', 'Migut.I00561' => 'egut', 'Migut.K01015' => 'egut', 'Migut.K01016' => 'egut', 'Migut.L00743' => 'egut', 'Migut.L00744' => 'egut', 'Migut.L00746' => 'egut', 'Migut.L00798' => 'egut', 'Migut.L00799' => 'egut', 'Migut.N02096' => 'egut', 'MSTRG.11259' => 'ama', 'MSTRG.23142' => 'ama', 'MSTRG.2499' => 'ama', 'Nitab4.5_0000003g0730' => 'nta', 'Nitab4.5_0000137g0020' => 'nta', 'Nitab4.5_0000721g0210' => 'nta', 'Nitab4.5_0000723g0050' => 'nta', 'Nitab4.5_0000913g0070' => 'nta', 'Nitab4.5_0001332g0040' => 'nta', 'Nitab4.5_0001771g0050' => 'nta', 'Nitab4.5_0001918g0050' => 'nta', 'Nitab4.5_0002686g0030' => 'nta', 'Nitab4.5_0003156g0020' => 'nta', 'Nitab4.5_0003383g0040' => 'nta', 'Nitab4.5_0003918g0010' => 'nta', 'Nitab4.5_0006760g0010' => 'nta', 'Nn1g05981' => 'nnu', 'Nn1g06288' => 'nnu', 'Nn3g16371' => 'nnu', 'Nn3g16786' => 'nnu', 'Nn4g22232' => 'nnu', 'Oeu005144.1' => 'oeu', 'Oeu005145.1' => 'oeu', 'Oeu011348.1' => 'oeu', 'Oeu016415.1' => 'oeu', 'Oeu023501.1' => 'oeu', 'Oeu044473.1' => 'oeu', 'Oeu048892.2' => 'oeu', 'Os01g0549200' => 'osa', 'Os02g0469300' => 'osa', 'Os04g0311100' => 'osa', 'Os06g0474900' => 'osa', 'Os10g0181700' => 'osa', 'Os11g0454800' => 'osa', 'Peaxi162Scf00037g00714' => 'pax', 'Peaxi162Scf00084g01217' => 'pax', 'Peaxi162Scf00257g00217' => 'pax', 'Peaxi162Scf00516g00215' => 'pax', 'Peaxi162Scf00689g00123' => 'pax', 'PGR044G2719' => 'pgr', 'PGR083G1360' => 'pgr', 'PGR102G2849' => 'pgr', 'PGR119G2534' => 'pgr', 'PGSC0003DMG400003538' => 'stu', 'PGSC0003DMG400028138' => 'stu', 'PGSC0003DMG400031732' => 'stu', 'PGSC0003DMG400038165' => 'stu', 'Phvul.002G284600' => 'pvu', 'Phvul.003G258200' => 'pvu', 'Phvul.009G176500' => 'pvu', 'Potri.003G167201' => 'ptr', 'Potri.005G118400' => 'ptr', 'Potri.012G089000' => 'ptr', 'Potri.012G102800' => 'ptr', 'Potri.015G079400' => 'ptr', 'Potri.015G100900' => 'ptr', 'Pp3c14_9810' => 'ppa', 'Pp3c15_10450' => 'ppa', 'Pp3c20_19150' => 'ppa', 'Pp3c23_12740' => 'ppa', 'Pp3c23_6310' => 'ppa', 'Pp3c24_3720' => 'ppa', 'Pp3c27_2580' => 'ppa', 'Pp3c9_8990' => 'ppa', 'PRCOL_00002854' => 'pco', 'Prupe.1G221200' => 'ppe', 'Prupe.3G289000' => 'ppe', 'Prupe.5G147000' => 'ppe', 'Prupe.6G157300' => 'ppe', 'Prupe.7G163400' => 'ppe', 'Psat0s2177g0040' => 'psa', 'Psat3g174760' => 'psa', 'Psat3g192160' => 'psa', 'Psat4g058520' => 'psa', 'Psat4g096840' => 'psa', 'Psat7g037320' => 'psa', 'PSO017G1274' => 'pso', 'PSO017G5166' => 'pso', 'PSO063G4558' => 'pso', 'PSO170G4458' => 'pso', 'PSO170G5005' => 'pso', 'PSO210G6156' => 'pso', 'PSO210G6635' => 'pso', 'PSO210G7397' => 'pso', 'PSO210G7700' => 'pso', 'PSO455G0035' => 'pso', 'PSO455G0180' => 'pso', 'PSO478G4515' => 'pso', 'PSO832G1305' => 'pso', 'PSO832G3489' => 'pso', 'QL02p075247' => 'qlo', 'QL03p051148' => 'qlo', 'QL05p010313' => 'qlo', 'QL06p034627' => 'qlo', 'QL10p001889' => 'qlo', 'QL10p010846' => 'qlo', 'RcHm_v2.0_Chr1g0350621' => 'rch', 'RcHm_v2.0_Chr1g0350641' => 'rch', 'RcHm_v2.0_Chr2g0092891' => 'rch', 'RcHm_v2.0_Chr2g0100251' => 'rch', 'RcHm_v2.0_Chr2g0158661' => 'rch', 'RcHm_v2.0_Chr2g0172741' => 'rch', 'RcHm_v2.0_Chr4g0429571' => 'rch', 'RcHm_v2.0_Chr5g0042471' => 'rch', 'RcHm_v2.0_Chr7g0189451' => 'rch', 'Rhsim08G0052000' => 'rsi', 'Rhsim08G0174400' => 'rsi', 'Rhsim08G0193200' => 'rsi', 'Rhsim10G0214800' => 'rsi', 'Rhsim10G0214900' => 'rsi', 'Rhsim10G0215000' => 'rsi', 'Rhsim12G0022900' => 'rsi', 'Rhsim12G0177500' => 'rsi', 'Rhsim12G0177700' => 'rsi', 'Sabra03G0122600' => 'sbr', 'Sabra05G0097400' => 'sbr', 'Sabra12G0064100' => 'sbr', 'Sabra15G0121300' => 'sbr', 'SalBow2G0642' => 'sbo', 'SalBow5G2667' => 'sbo', 'SalBow5G4873' => 'sbo', 'SalBow8G2395' => 'sbo', 'Sc03g0003290' => 'sci', 'Sc10g0010130' => 'sci', 'Sc22g0003650' => 'sci', 'Sed0001603' => 'sed', 'Sed0004259' => 'sed', 'Sed0006789' => 'sed', 'Sed0011838' => 'sed', 'Sed0012964' => 'sed', 'Sed0016383' => 'sed', 'Sed0019010' => 'sed', 'Sed0020188' => 'sed', 'SEGI_04702' => 'sgi', 'SEGI_17231' => 'sgi', 'SEGI_18877' => 'sgi', 'SEGI_25196' => 'sgi', 'SEGI_25515' => 'sgi', 'SEGI_28445' => 'sgi', 'SEGI_37452' => 'sgi', 'SGA_v2.0_scaffold188G40336' => 'sas', 'SGA_v2.0_scaffold228G43247' => 'sas', 'SGA_v2.0_scaffold280G46853' => 'sas', 'SGA_v2.0_scaffold34G13808' => 'sas', 'SGA_v2.0_scaffold40G15576' => 'sas', 'SGA_v2.0_scaffold611G53188' => 'sas', 'SGA_v2.0_scaffold78G25461' => 'sas', 'SGA_v2.0_scaffold90G27888' => 'sas', 'SHI08601' => 'shi', 'SHI08606' => 'shi', 'SHI17117' => 'shi', 'SHI17119' => 'shi', 'SMO118G0201' => 'smo', 'SMO169G0247' => 'smo', 'SMO176G0006' => 'smo', 'SMO176G0015' => 'smo', 'SMO202G0006' => 'smo', 'SMO240G0050' => 'smo', 'SMO286G0009' => 'smo', 'SMO338G0033' => 'smo', 'SMO356G0533' => 'smo', 'SMO364G0382' => 'smo', 'SMO367G0166' => 'smo', 'SMO367G1098' => 'smo', 'Solyc01g009920.3' => 'sly', 'Solyc01g099300.3' => 'sly', 'Solyc02g084700.3' => 'sly', 'Solyc03g097520.3' => 'sly', 'Solyc06g071580.3' => 'sly', 'Solyc10g081760.3' => 'sly', 'Sopen01g005480' => 'spe', 'Sopen01g042850' => 'spe', 'Sopen02g029370' => 'spe', 'Sopen03g028280' => 'spe', 'Sopen06g027870' => 'spe', 'Sopen10g032270' => 'spe', 'Sp5g18180' => 'spa', 'Sp6g12880' => 'spa', 'Sp6g30850' => 'spa', 'Sp7g22960' => 'spa', 'Sp7g34010' => 'spa', 'SpUn1326_0010' => 'spa', 'TAR371G0242' => 'tar', 'TAR622G0638' => 'tar', 'TAR628G1548' => 'tar', 'TAR629G1079' => 'tar', 'TAR629G3413' => 'tar', 'THA.LOC104804249' => 'tha', 'THA.LOC104808315' => 'tha', 'THA.LOC104809238' => 'tha', 'THA.LOC104825484' => 'tha', 'Thecc.01G025500' => 'tca', 'Thecc.03G015800' => 'tca', 'Thecc.03G018000' => 'tca', 'Thecc.03G134800' => 'tca', 'Thecc.04G014700' => 'tca', 'Thhalv10006991m.g' => 'esa', 'Thhalv10012707m.g' => 'esa', 'Thhalv10015739m.g' => 'esa', 'Thhalv10024553m.g' => 'esa', 'Thhalv10024673m.g' => 'esa', 'Thhalv10029187m.g' => 'esa', 'TPR.G12971' => 'tpr', 'TPR.G29396' => 'tpr', 'TPR.G33376' => 'tpr', 'TPR.G35508' => 'tpr', 'TPR.G35516' => 'tpr', 'TPR.G37317' => 'tpr', 'TPR.G37389' => 'tpr', 'TPR.G37523' => 'tpr', 'TPR.G559' => 'tpr', 'TWI14G0070' => 'twi', 'TWI14G0729' => 'twi', 'TWI18G0596' => 'twi', 'TWI39G0780' => 'twi', 'TWI39G0850' => 'twi', 'TWI73G1052' => 'twi', 'unitig_52.g17485' => 'ugi', 'unitig_61.g26355' => 'ugi', 'vmacro01040' => 'vma', 'vmacro16731' => 'vma', 'vmacro18270' => 'vma', 'vmacro19142' => 'vma', 'vmacro19407' => 'vma', 'vmacro19408' => 'vma', 'vmacro21899' => 'vma', 'vmacro21900' => 'vma', 'vmacro21901' => 'vma', 'VMungo0251G0490' => 'vmu', 'VMungo0251G1748' => 'vmu', 'VMungo1309G0421' => 'vmu', 'Zm00001eb086500' => 'zma', 'Zm00001eb150680' => 'zma', 'Zm00001eb162330' => 'zma', 'Zm00001eb203130' => 'zma', 'Zm00001eb369480' => 'zma', 'Zm00001eb382340' => 'zma', 'Zm00001eb416360' => 'zma' ), 'gf_id' => 'HOM05D000902', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000902' ), 'data_identifier' => 'HOM05D000902', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000902', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '663', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02470' => 'bna', 'A01p16260' => 'bna', 'A02p01680' => 'bna', 'A03p16600' => 'bna', 'A03p55660' => 'bna', 'A03p64160' => 'bna', 'A03p64170' => 'bna', 'A08p31900' => 'bna', 'A09p59530' => 'bna', 'A10p08230' => 'bna', 'A10p25090' => 'bna', 'Aa31LG3G7100' => 'aar', 'Aa31LG3G7110' => 'aar', 'Aa31LG6G13160' => 'aar', 'Aa31LG7G10770' => 'aar', 'Aa31LG7G3830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2723' => 'aag', 'Actinidia08045' => 'ach', 'Actinidia08888' => 'ach', 'Actinidia18333' => 'ach', 'Actinidia19334' => 'ach', 'Actinidia25552' => 'ach', 'Actinidia26089' => 'ach', 'Actinidia30615' => 'ach', 'Actinidia30616' => 'ach', 'Actinidia33083' => 'ach', 'Actinidia35762' => 'ach', 'Ah.02g110620' => 'amhyb', 'Ah.11g046390' => 'amhyb', 'AL1G31670' => 'aly', 'AL6G23730' => 'aly', 'AL7G14740' => 'aly', 'AL7G14750' => 'aly', 'AL7G14760' => 'aly', 'AL7G28220' => 'aly', 'AL8G24940' => 'aly', 'Aqoxy3G01665' => 'aox', 'Aqoxy3G02853' => 'aox', 'Aqoxy5G01513' => 'aox', 'Aqoxy5G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8SKA4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ75LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKDA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0LJZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7REX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZP4YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWX7I5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2QKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS0L9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPCD8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q161UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC7XCF' => 'arhy', 'AT1G19100' => 'ath', 'AT4G24970' => 'ath', 'AT4G36270' => 'ath', 'AT4G36280' => 'ath', 'AT4G36290' => 'ath', 'AT5G13130' => 'ath', 'AT5G50780' => 'ath', 'ATR0582G266' => 'atr', 'ATR0661G195' => 'atr', 'ATR1152G031' => 'atr', 'Atru.chr11.2382' => 'acertr', 'Atru.chr12.2337' => 'acertr', 'Atru.chr3.744' => 'acertr', 'Atru.chr6.1870' => 'acertr', 'Atru.chr9.2515' => 'acertr', 'AUR62004120' => 'cqu', 'AUR62005667' => 'cqu', 'AUR62007634' => 'cqu', 'AUR62008186' => 'cqu', 'AUR62008187' => 'cqu', 'AUR62008188' => 'cqu', 'AUR62027954' => 'cqu', 'AUR62028766' => 'cqu', 'AUR62028767' => 'cqu', 'AUR62028768' => 'cqu', 'AUR62028886' => 'cqu', 'AUR62029563' => 'cqu', 'AUR62038832' => 'cqu', 'BcaB01g04149' => 'bca', 'BcaB03g12940' => 'bca', 'BcaB03g13090' => 'bca', 'BcaB03g14466' => 'bca', 'BcaB05g24035' => 'bca', 'BcaC01g06050' => 'bca', 'BcaC04g19148' => 'bca', 'BcaC04g20761' => 'bca', 'BcaC06g32845' => 'bca', 'BcaC07g41274' => 'bca', 'BcaC09g50827' => 'bca', 'BcaNung00741' => 'bca', 'BcaNung00742' => 'bca', 'BcaNung01859' => 'bca', 'BcaNung03985' => 'bca', 'BcaNung03989' => 'bca', 'BcaNung05661' => 'bca', 'BolC1t00257H' => 'bol', 'BolC1t01956H' => 'bol', 'BolC2t06534H' => 'bol', 'BolC3t14334H' => 'bol', 'BolC5t30451H' => 'bol', 'BolC7t45880H' => 'bol', 'BolC7t46586H' => 'bol', 'BolC8t49301H' => 'bol', 'BolC8t51837H' => 'bol', 'BolC9t56822H' => 'bol', 'BolC9t59235H' => 'bol', 'BraA01t00234Z' => 'bra', 'BraA01t01563Z' => 'bra', 'BraA02t05147Z' => 'bra', 'BraA03t10947Z' => 'bra', 'BraA03t14633Z' => 'bra', 'BraA08t35112Z' => 'bra', 'BraA09t41330Z' => 'bra', 'BraA10t44570Z' => 'bra', 'C01p02670' => 'bna', 'C01p20260' => 'bna', 'C02p05890' => 'bna', 'C03p19530' => 'bna', 'C05p17470' => 'bna', 'C07p53900' => 'bna', 'C07p61630' => 'bna', 'C08p16800' => 'bna', 'C08p42810' => 'bna', 'C09p39480' => 'bna', 'C09p63980' => 'bna', 'CAN.G1001.7' => 'can', 'CAN.G1034.55' => 'can', 'CAN.G143.7' => 'can', 'CAN.G3340.1' => 'can', 'CAN.G358.19' => 'can', 'CAN.G373.2' => 'can', 'CAN.G674.16' => 'can', 'CAN.G674.17' => 'can', 'CAN.G674.18' => 'can', 'CAN.G732.2' => 'can', 'CAN.G732.3' => 'can', 'CAN.G993.39' => 'can', 'CANSAT01G2052' => 'cansat', 'CANSAT80G0070' => 'cansat', 'CANSAT80G0483' => 'cansat', 'CANSAT80G0625' => 'cansat', 'CARHR019690' => 'chi', 'CARHR080280' => 'chi', 'CARHR152750' => 'chi', 'CARHR152760' => 'chi', 'CARHR152770' => 'chi', 'CARHR200340' => 'chi', 'CARHR232370' => 'chi', 'CARHR244670' => 'chi', 'CARHR244680' => 'chi', 'CARHR257520' => 'chi', 'Carub.0001s1872' => 'cru', 'Carub.0006s1130' => 'cru', 'Carub.0007s0396' => 'cru', 'Carub.0007s0397' => 'cru', 'Carub.0007s1608' => 'cru', 'Carub.0008s1068' => 'cru', 'Carub.0008s1077' => 'cru', 'Ca_16158_v3' => 'car', 'Ca_17571_v3' => 'car', 'Ca_21936_v3' => 'car', 'Ca_22350_v3' => 'car', 'CBR_g22445' => 'cbr', 'CBR_g26290' => 'cbr', 'Cc04_g09610' => 'ccan', 'Cc04_g12280' => 'ccan', 'Cc07_g10230' => 'ccan', 'CDE02G0093' => 'cde', 'CDE02G0701' => 'cde', 'CDE04G1050' => 'cde', 'CDE05G1833' => 'cde', 'CDE05G3058' => 'cde', 'CDE05G3380' => 'cde', 'CDE06G0536' => 'cde', 'Cfa006923' => 'cfa', 'Cfa009402' => 'cfa', 'Cfa018751' => 'cfa', 'Cfa019164' => 'cfa', 'Cfa022935' => 'cfa', 'Ciclev10019081m.g' => 'ccl', 'Ciclev10025076m.g' => 'ccl', 'Ciclev10030712m.g' => 'ccl', 'Ciclev10033760m.g' => 'ccl', 'CiPaw.05G105600' => 'cil', 'CiPaw.08G136700' => 'cil', 'CiPaw.11G003900' => 'cil', 'CiPaw.11G023700' => 'cil', 'CiPaw.12G003700' => 'cil', 'ClCG06G017100' => 'cla', 'ClCG06G018110' => 'cla', 'ClCG07G008800' => 'cla', 'ClCG07G015330' => 'cla', 'COL.COLO4_13698' => 'col', 'COL.COLO4_16659' => 'col', 'COL.COLO4_21986' => 'col', 'COL.COLO4_24049' => 'col', 'COL.COLO4_29061' => 'col', 'COL.COLO4_29075' => 'col', 'COL.COLO4_30094' => 'col', 'Cpa.g.c33689' => 'cpa', 'Cpa.g.sc108.39' => 'cpa', 'Cpa.g.sc108.41' => 'cpa', 'Cpa.g.sc1163.1' => 'cpa', 'Cpa.g.sc4.155' => 'cpa', 'Cpa.g.sc6.194' => 'cpa', 'CsaV3_1G000340' => 'csa', 'CsaV3_1G001400' => 'csa', 'CsaV3_4G002220' => 'csa', 'CsaV3_4G005370' => 'csa', 'CSS0007487' => 'camsi', 'CSS0008066' => 'camsi', 'CSS0009120' => 'camsi', 'CSS0015512' => 'camsi', 'CSS0022409' => 'camsi', 'CSS0025358' => 'camsi', 'CSS0044547' => 'camsi', 'DCAR_013057' => 'dca', 'DCAR_015058' => 'dca', 'DCAR_016027' => 'dca', 'DCAR_017327' => 'dca', 'DCAR_020743' => 'dca', 'DCAR_026157' => 'dca', 'DCAR_032339' => 'dca', 'DCAR_032340' => 'dca', 'Dinv11200' => 'din', 'Dinv11201' => 'din', 'Dinv20631' => 'din', 'Dinv23182' => 'din', 'Dinv33466' => 'din', 'Dinv33583' => 'din', 'Dinv38565' => 'din', 'Duzib068G0200' => 'dzi', 'Duzib147G0132' => 'dzi', 'Duzib147G0635' => 'dzi', 'Duzib205G1670' => 'dzi', 'Duzib251G0606' => 'dzi', 'ECA232G3336' => 'eca', 'ECA232G3763' => 'eca', 'ECA232G4845' => 'eca', 'ECA234G1607' => 'eca', 'ECA246G0932' => 'eca', 'ECA247G0781' => 'eca', 'ECA247G1932' => 'eca', 'ECA247G2079' => 'eca', 'ECA247G3338' => 'eca', 'ECA247G4115' => 'eca', 'EL10Ac3g06552' => 'bvu', 'EL10Ac5g10721' => 'bvu', 'EL10Ac5g10722' => 'bvu', 'EL10Ac5g10723' => 'bvu', 'EL10Ac5g11361' => 'bvu', 'EL10Ac6g13553' => 'bvu', 'EL10As8g23872' => 'bvu', 'Eucgr.B00250' => 'egr', 'Eucgr.B00251' => 'egr', 'Eucgr.B03533' => 'egr', 'Eucgr.I02381' => 'egr', 'Eucgr.K02700' => 'egr', 'FAN02G0174' => 'fan', 'FAN02G3146' => 'fan', 'FAN04G1672' => 'fan', 'FAN04G2273' => 'fan', 'FAN05G2791' => 'fan', 'FAN05G4035' => 'fan', 'FAN07G0834' => 'fan', 'FAN08G1198' => 'fan', 'FAN09G4182' => 'fan', 'FAN12G0496' => 'fan', 'FAN13G1027' => 'fan', 'FAN13G2951' => 'fan', 'FAN14G0705' => 'fan', 'FAN14G0720' => 'fan', 'FAN17G0201' => 'fan', 'FAN17G2665' => 'fan', 'FAN18G1456' => 'fan', 'FAN18G1525' => 'fan', 'FAN18G3500' => 'fan', 'FAN28G2670' => 'fan', 'FvH4_1g12391' => 'fve', 'FvH4_4g23220' => 'fve', 'FvH4_5g08810' => 'fve', 'FvH4_5g28960' => 'fve', 'FvH4_6g42820' => 'fve', 'FvH4_6g51110' => 'fve', 'Glyma.02G051802' => 'gma', 'Glyma.04G185300' => 'gma', 'Glyma.05G202900' => 'gma', 'Glyma.08G010300' => 'gma', 'Glyma.16G131900' => 'gma', 'Glyma.17G087900' => 'gma', 'Gohir.A07G048600' => 'ghi', 'Gohir.A11G179000' => 'ghi', 'Gohir.A12G140900' => 'ghi', 'Gohir.A12G140950' => 'ghi', 'Gohir.A12G191700' => 'ghi', 'Gohir.A13G086300' => 'ghi', 'Gohir.D07G052900' => 'ghi', 'Gohir.D11G186600' => 'ghi', 'Gohir.D12G145575' => 'ghi', 'Gohir.D12G145650' => 'ghi', 'Gohir.D12G145725' => 'ghi', 'Gohir.D12G194050' => 'ghi', 'Gohir.D13G091800' => 'ghi', 'Gorai.001G055900' => 'gra', 'Gorai.007G198400' => 'gra', 'Gorai.008G157000' => 'gra', 'Gorai.008G157100' => 'gra', 'Gorai.008G208700' => 'gra', 'Gorai.010G138700' => 'gra', 'GSVIVG01000977001' => 'vvi', 'GSVIVG01007708001' => 'vvi', 'GSVIVG01008587001' => 'vvi', 'GSVIVG01018849001' => 'vvi', 'GSVIVG01032432001' => 'vvi', 'HanXRQChr02g0034131' => 'han', 'HanXRQChr02g0035981' => 'han', 'HanXRQChr02g0035991' => 'han', 'HanXRQChr05g0155611' => 'han', 'HanXRQChr05g0155621' => 'han', 'HanXRQChr08g0236501' => 'han', 'HanXRQChr09g0261321' => 'han', 'HanXRQChr09g0272081' => 'han', 'HanXRQChr10g0310741' => 'han', 'HanXRQChr11g0325591' => 'han', 'HanXRQChr12g0385691' => 'han', 'HanXRQChr13g0387801' => 'han', 'HanXRQChr15g0463011' => 'han', 'Haze_03826' => 'cav', 'Haze_03827' => 'cav', 'Haze_07183' => 'cav', 'Haze_07537' => 'cav', 'Haze_07539' => 'cav', 'Haze_12461' => 'cav', 'Haze_16115' => 'cav', 'Haze_16808' => 'cav', 'Haze_18531' => 'cav', 'Hma1.2p1_0046F.1_g026700' => 'hma', 'Hma1.2p1_0046F.1_g026710' => 'hma', 'Hma1.2p1_0168F.1_g074340' => 'hma', 'Hma1.2p1_0266F.1_g107030' => 'hma', 'Hma1.2p1_0266F.1_g107060' => 'hma', 'Hma1.2p1_0275F.1_g110510' => 'hma', 'Hma1.2p1_0592F.1_g185490' => 'hma', 'Hma1.2p1_0592F.1_g185500' => 'hma', 'Hma1.2p1_0592F.1_g185510' => 'hma', 'Hma1.2p1_0592F.1_g185520' => 'hma', 'Hma1.2p1_0592F.1_g185530' => 'hma', 'Hma1.2p1_0818F.1_g223450' => 'hma', 'HPP92_009708' => 'vpl', 'HPP92_009793' => 'vpl', 'HPP92_009796' => 'vpl', 'HPP92_009797' => 'vpl', 'HPP92_014940' => 'vpl', 'HPP92_014988' => 'vpl', 'Hund02463' => 'sun', 'Hund02760' => 'sun', 'Hund05071' => 'sun', 'Hund10108' => 'sun', 'Hund11204' => 'sun', 'Hund14016' => 'sun', 'Hund16464' => 'sun', 'Lalb_Chr09g0333391' => 'lal', 'Lalb_Chr11g0070461' => 'lal', 'Lalb_Chr12g0201671' => 'lal', 'Lalb_Chr13g0297161' => 'lal', 'Lj1g0002823' => 'lja', 'Lj3C1074T6' => 'lonja', 'Lj4A212T28' => 'lonja', 'Lj4g0005516' => 'lja', 'Lj4g0013705' => 'lja', 'Lj4g0027865' => 'lja', 'Lj5C92G16' => 'lonja', 'Lj5C92T12' => 'lonja', 'Lj7C596T3' => 'lonja', 'Lj9A446G59' => 'lonja', 'Lj9A482G21' => 'lonja', 'Lsat_1_v5_gn_1_28261' => 'lsa', 'Lsat_1_v5_gn_1_28281' => 'lsa', 'Lsat_1_v5_gn_1_32721' => 'lsa', 'Lsat_1_v5_gn_4_151760' => 'lsa', 'Lsat_1_v5_gn_4_2120' => 'lsa', 'Lsat_1_v5_gn_4_75761' => 'lsa', 'Lsat_1_v5_gn_5_10920' => 'lsa', 'Manes.02G099900' => 'mes', 'Manes.11G096200' => 'mes', 'Manes.12G007200' => 'mes', 'Manes.14G048300' => 'mes', 'Manes.17G114700' => 'mes', 'Mapoly0002s0070' => 'mpo', 'Mapoly0029s0099' => 'mpo', 'MBI07_g24742_MAGBIO' => 'mbi', 'MBI10_g27988_MAGBIO' => 'mbi', 'MBI11_g13057_MAGBIO' => 'mbi', 'MD02G1137200' => 'mdo', 'MD06G1137200' => 'mdo', 'MD07G1122300' => 'mdo', 'MD09G1078200' => 'mdo', 'MD13G1123700' => 'mdo', 'MD14G1151900' => 'mdo', 'MD17G1030900' => 'mdo', 'MD17G1068200' => 'mdo', 'MD17G1068600' => 'mdo', 'Medtr3g077540' => 'mtr', 'Medtr4g105530' => 'mtr', 'Medtr8g076580' => 'mtr', 'Medtr8g076590' => 'mtr', 'Medtr8g096410' => 'mtr', 'MELO3C016411.2' => 'cme', 'MELO3C017780.2' => 'cme', 'MELO3C022560.2' => 'cme', 'MELO3C026187.2' => 'cme', 'MELO3C026286.2' => 'cme', 'MELO3C032854.2' => 'cme', 'Migut.H02495' => 'egut', 'Migut.I00561' => 'egut', 'Migut.K01015' => 'egut', 'Migut.K01016' => 'egut', 'Migut.L00743' => 'egut', 'Migut.L00744' => 'egut', 'Migut.L00746' => 'egut', 'Migut.L00798' => 'egut', 'Migut.L00799' => 'egut', 'Migut.N02096' => 'egut', 'MSTRG.11259' => 'ama', 'MSTRG.23142' => 'ama', 'MSTRG.2499' => 'ama', 'Nitab4.5_0000003g0730' => 'nta', 'Nitab4.5_0000137g0020' => 'nta', 'Nitab4.5_0000721g0210' => 'nta', 'Nitab4.5_0000723g0050' => 'nta', 'Nitab4.5_0000913g0070' => 'nta', 'Nitab4.5_0001332g0040' => 'nta', 'Nitab4.5_0001771g0050' => 'nta', 'Nitab4.5_0001918g0050' => 'nta', 'Nitab4.5_0002686g0030' => 'nta', 'Nitab4.5_0003156g0020' => 'nta', 'Nitab4.5_0003383g0040' => 'nta', 'Nitab4.5_0003918g0010' => 'nta', 'Nitab4.5_0006760g0010' => 'nta', 'Nn1g05981' => 'nnu', 'Nn1g06288' => 'nnu', 'Nn3g16371' => 'nnu', 'Nn3g16786' => 'nnu', 'Nn4g22232' => 'nnu', 'Oeu005144.1' => 'oeu', 'Oeu005145.1' => 'oeu', 'Oeu011348.1' => 'oeu', 'Oeu016415.1' => 'oeu', 'Oeu023501.1' => 'oeu', 'Oeu044473.1' => 'oeu', 'Oeu048892.2' => 'oeu', 'Os01g0549200' => 'osa', 'Os02g0469300' => 'osa', 'Os04g0311100' => 'osa', 'Os06g0474900' => 'osa', 'Os10g0181700' => 'osa', 'Os11g0454800' => 'osa', 'Peaxi162Scf00037g00714' => 'pax', 'Peaxi162Scf00084g01217' => 'pax', 'Peaxi162Scf00257g00217' => 'pax', 'Peaxi162Scf00516g00215' => 'pax', 'Peaxi162Scf00689g00123' => 'pax', 'PGR044G2719' => 'pgr', 'PGR083G1360' => 'pgr', 'PGR102G2849' => 'pgr', 'PGR119G2534' => 'pgr', 'PGSC0003DMG400003538' => 'stu', 'PGSC0003DMG400028138' => 'stu', 'PGSC0003DMG400031732' => 'stu', 'PGSC0003DMG400038165' => 'stu', 'Phvul.002G284600' => 'pvu', 'Phvul.003G258200' => 'pvu', 'Phvul.009G176500' => 'pvu', 'Potri.003G167201' => 'ptr', 'Potri.005G118400' => 'ptr', 'Potri.012G089000' => 'ptr', 'Potri.012G102800' => 'ptr', 'Potri.015G079400' => 'ptr', 'Potri.015G100900' => 'ptr', 'Pp3c14_9810' => 'ppa', 'Pp3c15_10450' => 'ppa', 'Pp3c20_19150' => 'ppa', 'Pp3c23_12740' => 'ppa', 'Pp3c23_6310' => 'ppa', 'Pp3c24_3720' => 'ppa', 'Pp3c27_2580' => 'ppa', 'Pp3c9_8990' => 'ppa', 'PRCOL_00002854' => 'pco', 'Prupe.1G221200' => 'ppe', 'Prupe.3G289000' => 'ppe', 'Prupe.5G147000' => 'ppe', 'Prupe.6G157300' => 'ppe', 'Prupe.7G163400' => 'ppe', 'Psat0s2177g0040' => 'psa', 'Psat3g174760' => 'psa', 'Psat3g192160' => 'psa', 'Psat4g058520' => 'psa', 'Psat4g096840' => 'psa', 'Psat7g037320' => 'psa', 'PSO017G1274' => 'pso', 'PSO017G5166' => 'pso', 'PSO063G4558' => 'pso', 'PSO170G4458' => 'pso', 'PSO170G5005' => 'pso', 'PSO210G6156' => 'pso', 'PSO210G6635' => 'pso', 'PSO210G7397' => 'pso', 'PSO210G7700' => 'pso', 'PSO455G0035' => 'pso', 'PSO455G0180' => 'pso', 'PSO478G4515' => 'pso', 'PSO832G1305' => 'pso', 'PSO832G3489' => 'pso', 'QL02p075247' => 'qlo', 'QL03p051148' => 'qlo', 'QL05p010313' => 'qlo', 'QL06p034627' => 'qlo', 'QL10p001889' => 'qlo', 'QL10p010846' => 'qlo', 'RcHm_v2.0_Chr1g0350621' => 'rch', 'RcHm_v2.0_Chr1g0350641' => 'rch', 'RcHm_v2.0_Chr2g0092891' => 'rch', 'RcHm_v2.0_Chr2g0100251' => 'rch', 'RcHm_v2.0_Chr2g0158661' => 'rch', 'RcHm_v2.0_Chr2g0172741' => 'rch', 'RcHm_v2.0_Chr4g0429571' => 'rch', 'RcHm_v2.0_Chr5g0042471' => 'rch', 'RcHm_v2.0_Chr7g0189451' => 'rch', 'Rhsim08G0052000' => 'rsi', 'Rhsim08G0174400' => 'rsi', 'Rhsim08G0193200' => 'rsi', 'Rhsim10G0214800' => 'rsi', 'Rhsim10G0214900' => 'rsi', 'Rhsim10G0215000' => 'rsi', 'Rhsim12G0022900' => 'rsi', 'Rhsim12G0177500' => 'rsi', 'Rhsim12G0177700' => 'rsi', 'Sabra03G0122600' => 'sbr', 'Sabra05G0097400' => 'sbr', 'Sabra12G0064100' => 'sbr', 'Sabra15G0121300' => 'sbr', 'SalBow2G0642' => 'sbo', 'SalBow5G2667' => 'sbo', 'SalBow5G4873' => 'sbo', 'SalBow8G2395' => 'sbo', 'Sc03g0003290' => 'sci', 'Sc10g0010130' => 'sci', 'Sc22g0003650' => 'sci', 'Sed0001603' => 'sed', 'Sed0004259' => 'sed', 'Sed0006789' => 'sed', 'Sed0011838' => 'sed', 'Sed0012964' => 'sed', 'Sed0016383' => 'sed', 'Sed0019010' => 'sed', 'Sed0020188' => 'sed', 'SEGI_04702' => 'sgi', 'SEGI_17231' => 'sgi', 'SEGI_18877' => 'sgi', 'SEGI_25196' => 'sgi', 'SEGI_25515' => 'sgi', 'SEGI_28445' => 'sgi', 'SEGI_37452' => 'sgi', 'SGA_v2.0_scaffold188G40336' => 'sas', 'SGA_v2.0_scaffold228G43247' => 'sas', 'SGA_v2.0_scaffold280G46853' => 'sas', 'SGA_v2.0_scaffold34G13808' => 'sas', 'SGA_v2.0_scaffold40G15576' => 'sas', 'SGA_v2.0_scaffold611G53188' => 'sas', 'SGA_v2.0_scaffold78G25461' => 'sas', 'SGA_v2.0_scaffold90G27888' => 'sas', 'SHI08601' => 'shi', 'SHI08606' => 'shi', 'SHI17117' => 'shi', 'SHI17119' => 'shi', 'SMO118G0201' => 'smo', 'SMO169G0247' => 'smo', 'SMO176G0006' => 'smo', 'SMO176G0015' => 'smo', 'SMO202G0006' => 'smo', 'SMO240G0050' => 'smo', 'SMO286G0009' => 'smo', 'SMO338G0033' => 'smo', 'SMO356G0533' => 'smo', 'SMO364G0382' => 'smo', 'SMO367G0166' => 'smo', 'SMO367G1098' => 'smo', 'Solyc01g009920.3' => 'sly', 'Solyc01g099300.3' => 'sly', 'Solyc02g084700.3' => 'sly', 'Solyc03g097520.3' => 'sly', 'Solyc06g071580.3' => 'sly', 'Solyc10g081760.3' => 'sly', 'Sopen01g005480' => 'spe', 'Sopen01g042850' => 'spe', 'Sopen02g029370' => 'spe', 'Sopen03g028280' => 'spe', 'Sopen06g027870' => 'spe', 'Sopen10g032270' => 'spe', 'Sp5g18180' => 'spa', 'Sp6g12880' => 'spa', 'Sp6g30850' => 'spa', 'Sp7g22960' => 'spa', 'Sp7g34010' => 'spa', 'SpUn1326_0010' => 'spa', 'TAR371G0242' => 'tar', 'TAR622G0638' => 'tar', 'TAR628G1548' => 'tar', 'TAR629G1079' => 'tar', 'TAR629G3413' => 'tar', 'THA.LOC104804249' => 'tha', 'THA.LOC104808315' => 'tha', 'THA.LOC104809238' => 'tha', 'THA.LOC104825484' => 'tha', 'Thecc.01G025500' => 'tca', 'Thecc.03G015800' => 'tca', 'Thecc.03G018000' => 'tca', 'Thecc.03G134800' => 'tca', 'Thecc.04G014700' => 'tca', 'Thhalv10006991m.g' => 'esa', 'Thhalv10012707m.g' => 'esa', 'Thhalv10015739m.g' => 'esa', 'Thhalv10024553m.g' => 'esa', 'Thhalv10024673m.g' => 'esa', 'Thhalv10029187m.g' => 'esa', 'TPR.G12971' => 'tpr', 'TPR.G29396' => 'tpr', 'TPR.G33376' => 'tpr', 'TPR.G35508' => 'tpr', 'TPR.G35516' => 'tpr', 'TPR.G37317' => 'tpr', 'TPR.G37389' => 'tpr', 'TPR.G37523' => 'tpr', 'TPR.G559' => 'tpr', 'TWI14G0070' => 'twi', 'TWI14G0729' => 'twi', 'TWI18G0596' => 'twi', 'TWI39G0780' => 'twi', 'TWI39G0850' => 'twi', 'TWI73G1052' => 'twi', 'unitig_52.g17485' => 'ugi', 'unitig_61.g26355' => 'ugi', 'vmacro01040' => 'vma', 'vmacro16731' => 'vma', 'vmacro18270' => 'vma', 'vmacro19142' => 'vma', 'vmacro19407' => 'vma', 'vmacro19408' => 'vma', 'vmacro21899' => 'vma', 'vmacro21900' => 'vma', 'vmacro21901' => 'vma', 'VMungo0251G0490' => 'vmu', 'VMungo0251G1748' => 'vmu', 'VMungo1309G0421' => 'vmu', 'Zm00001eb086500' => 'zma', 'Zm00001eb150680' => 'zma', 'Zm00001eb162330' => 'zma', 'Zm00001eb203130' => 'zma', 'Zm00001eb369480' => 'zma', 'Zm00001eb382340' => 'zma', 'Zm00001eb416360' => 'zma' ) $gf_id = 'HOM05D000902' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000902' ) $data_identifier = 'HOM05D000902' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 13, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 10, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 6, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 9, 'hma' => (int) 12, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 4, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 6, 'ppa' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 6, 'rch' => (int) 9, 'rsi' => (int) 9, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 12, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 3, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416360' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000902', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '663', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02470' => 'bna', 'A01p16260' => 'bna', 'A02p01680' => 'bna', 'A03p16600' => 'bna', 'A03p55660' => 'bna', 'A03p64160' => 'bna', 'A03p64170' => 'bna', 'A08p31900' => 'bna', 'A09p59530' => 'bna', 'A10p08230' => 'bna', 'A10p25090' => 'bna', 'Aa31LG3G7100' => 'aar', 'Aa31LG3G7110' => 'aar', 'Aa31LG6G13160' => 'aar', 'Aa31LG7G10770' => 'aar', 'Aa31LG7G3830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2723' => 'aag', 'Actinidia08045' => 'ach', 'Actinidia08888' => 'ach', 'Actinidia18333' => 'ach', 'Actinidia19334' => 'ach', 'Actinidia25552' => 'ach', 'Actinidia26089' => 'ach', 'Actinidia30615' => 'ach', 'Actinidia30616' => 'ach', 'Actinidia33083' => 'ach', 'Actinidia35762' => 'ach', 'Ah.02g110620' => 'amhyb', 'Ah.11g046390' => 'amhyb', 'AL1G31670' => 'aly', 'AL6G23730' => 'aly', 'AL7G14740' => 'aly', 'AL7G14750' => 'aly', 'AL7G14760' => 'aly', 'AL7G28220' => 'aly', 'AL8G24940' => 'aly', 'Aqoxy3G01665' => 'aox', 'Aqoxy3G02853' => 'aox', 'Aqoxy5G01513' => 'aox', 'Aqoxy5G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8SKA4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ75LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKDA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0LJZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7REX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZP4YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWX7I5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2QKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS0L9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPCD8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q161UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC7XCF' => 'arhy', 'AT1G19100' => 'ath', 'AT4G24970' => 'ath', 'AT4G36270' => 'ath', 'AT4G36280' => 'ath', 'AT4G36290' => 'ath', 'AT5G13130' => 'ath', 'AT5G50780' => 'ath', 'ATR0582G266' => 'atr', 'ATR0661G195' => 'atr', 'ATR1152G031' => 'atr', 'Atru.chr11.2382' => 'acertr', 'Atru.chr12.2337' => 'acertr', 'Atru.chr3.744' => 'acertr', 'Atru.chr6.1870' => 'acertr', 'Atru.chr9.2515' => 'acertr', 'AUR62004120' => 'cqu', 'AUR62005667' => 'cqu', 'AUR62007634' => 'cqu', 'AUR62008186' => 'cqu', 'AUR62008187' => 'cqu', 'AUR62008188' => 'cqu', 'AUR62027954' => 'cqu', 'AUR62028766' => 'cqu', 'AUR62028767' => 'cqu', 'AUR62028768' => 'cqu', 'AUR62028886' => 'cqu', 'AUR62029563' => 'cqu', 'AUR62038832' => 'cqu', 'BcaB01g04149' => 'bca', 'BcaB03g12940' => 'bca', 'BcaB03g13090' => 'bca', 'BcaB03g14466' => 'bca', 'BcaB05g24035' => 'bca', 'BcaC01g06050' => 'bca', 'BcaC04g19148' => 'bca', 'BcaC04g20761' => 'bca', 'BcaC06g32845' => 'bca', 'BcaC07g41274' => 'bca', 'BcaC09g50827' => 'bca', 'BcaNung00741' => 'bca', 'BcaNung00742' => 'bca', 'BcaNung01859' => 'bca', 'BcaNung03985' => 'bca', 'BcaNung03989' => 'bca', 'BcaNung05661' => 'bca', 'BolC1t00257H' => 'bol', 'BolC1t01956H' => 'bol', 'BolC2t06534H' => 'bol', 'BolC3t14334H' => 'bol', 'BolC5t30451H' => 'bol', 'BolC7t45880H' => 'bol', 'BolC7t46586H' => 'bol', 'BolC8t49301H' => 'bol', 'BolC8t51837H' => 'bol', 'BolC9t56822H' => 'bol', 'BolC9t59235H' => 'bol', 'BraA01t00234Z' => 'bra', 'BraA01t01563Z' => 'bra', 'BraA02t05147Z' => 'bra', 'BraA03t10947Z' => 'bra', 'BraA03t14633Z' => 'bra', 'BraA08t35112Z' => 'bra', 'BraA09t41330Z' => 'bra', 'BraA10t44570Z' => 'bra', 'C01p02670' => 'bna', 'C01p20260' => 'bna', 'C02p05890' => 'bna', 'C03p19530' => 'bna', 'C05p17470' => 'bna', 'C07p53900' => 'bna', 'C07p61630' => 'bna', 'C08p16800' => 'bna', 'C08p42810' => 'bna', 'C09p39480' => 'bna', 'C09p63980' => 'bna', 'CAN.G1001.7' => 'can', 'CAN.G1034.55' => 'can', 'CAN.G143.7' => 'can', 'CAN.G3340.1' => 'can', 'CAN.G358.19' => 'can', 'CAN.G373.2' => 'can', 'CAN.G674.16' => 'can', 'CAN.G674.17' => 'can', 'CAN.G674.18' => 'can', 'CAN.G732.2' => 'can', 'CAN.G732.3' => 'can', 'CAN.G993.39' => 'can', 'CANSAT01G2052' => 'cansat', 'CANSAT80G0070' => 'cansat', 'CANSAT80G0483' => 'cansat', 'CANSAT80G0625' => 'cansat', 'CARHR019690' => 'chi', 'CARHR080280' => 'chi', 'CARHR152750' => 'chi', 'CARHR152760' => 'chi', 'CARHR152770' => 'chi', 'CARHR200340' => 'chi', 'CARHR232370' => 'chi', 'CARHR244670' => 'chi', 'CARHR244680' => 'chi', 'CARHR257520' => 'chi', 'Carub.0001s1872' => 'cru', 'Carub.0006s1130' => 'cru', 'Carub.0007s0396' => 'cru', 'Carub.0007s0397' => 'cru', 'Carub.0007s1608' => 'cru', 'Carub.0008s1068' => 'cru', 'Carub.0008s1077' => 'cru', 'Ca_16158_v3' => 'car', 'Ca_17571_v3' => 'car', 'Ca_21936_v3' => 'car', 'Ca_22350_v3' => 'car', 'CBR_g22445' => 'cbr', 'CBR_g26290' => 'cbr', 'Cc04_g09610' => 'ccan', 'Cc04_g12280' => 'ccan', 'Cc07_g10230' => 'ccan', 'CDE02G0093' => 'cde', 'CDE02G0701' => 'cde', 'CDE04G1050' => 'cde', 'CDE05G1833' => 'cde', 'CDE05G3058' => 'cde', 'CDE05G3380' => 'cde', 'CDE06G0536' => 'cde', 'Cfa006923' => 'cfa', 'Cfa009402' => 'cfa', 'Cfa018751' => 'cfa', 'Cfa019164' => 'cfa', 'Cfa022935' => 'cfa', 'Ciclev10019081m.g' => 'ccl', 'Ciclev10025076m.g' => 'ccl', 'Ciclev10030712m.g' => 'ccl', 'Ciclev10033760m.g' => 'ccl', 'CiPaw.05G105600' => 'cil', 'CiPaw.08G136700' => 'cil', 'CiPaw.11G003900' => 'cil', 'CiPaw.11G023700' => 'cil', 'CiPaw.12G003700' => 'cil', 'ClCG06G017100' => 'cla', 'ClCG06G018110' => 'cla', 'ClCG07G008800' => 'cla', 'ClCG07G015330' => 'cla', 'COL.COLO4_13698' => 'col', 'COL.COLO4_16659' => 'col', 'COL.COLO4_21986' => 'col', 'COL.COLO4_24049' => 'col', 'COL.COLO4_29061' => 'col', 'COL.COLO4_29075' => 'col', 'COL.COLO4_30094' => 'col', 'Cpa.g.c33689' => 'cpa', 'Cpa.g.sc108.39' => 'cpa', 'Cpa.g.sc108.41' => 'cpa', 'Cpa.g.sc1163.1' => 'cpa', 'Cpa.g.sc4.155' => 'cpa', 'Cpa.g.sc6.194' => 'cpa', 'CsaV3_1G000340' => 'csa', 'CsaV3_1G001400' => 'csa', 'CsaV3_4G002220' => 'csa', 'CsaV3_4G005370' => 'csa', 'CSS0007487' => 'camsi', 'CSS0008066' => 'camsi', 'CSS0009120' => 'camsi', 'CSS0015512' => 'camsi', 'CSS0022409' => 'camsi', 'CSS0025358' => 'camsi', 'CSS0044547' => 'camsi', 'DCAR_013057' => 'dca', 'DCAR_015058' => 'dca', 'DCAR_016027' => 'dca', 'DCAR_017327' => 'dca', 'DCAR_020743' => 'dca', 'DCAR_026157' => 'dca', 'DCAR_032339' => 'dca', 'DCAR_032340' => 'dca', 'Dinv11200' => 'din', 'Dinv11201' => 'din', 'Dinv20631' => 'din', 'Dinv23182' => 'din', 'Dinv33466' => 'din', 'Dinv33583' => 'din', 'Dinv38565' => 'din', 'Duzib068G0200' => 'dzi', 'Duzib147G0132' => 'dzi', 'Duzib147G0635' => 'dzi', 'Duzib205G1670' => 'dzi', 'Duzib251G0606' => 'dzi', 'ECA232G3336' => 'eca', 'ECA232G3763' => 'eca', 'ECA232G4845' => 'eca', 'ECA234G1607' => 'eca', 'ECA246G0932' => 'eca', 'ECA247G0781' => 'eca', 'ECA247G1932' => 'eca', 'ECA247G2079' => 'eca', 'ECA247G3338' => 'eca', 'ECA247G4115' => 'eca', 'EL10Ac3g06552' => 'bvu', 'EL10Ac5g10721' => 'bvu', 'EL10Ac5g10722' => 'bvu', 'EL10Ac5g10723' => 'bvu', 'EL10Ac5g11361' => 'bvu', 'EL10Ac6g13553' => 'bvu', 'EL10As8g23872' => 'bvu', 'Eucgr.B00250' => 'egr', 'Eucgr.B00251' => 'egr', 'Eucgr.B03533' => 'egr', 'Eucgr.I02381' => 'egr', 'Eucgr.K02700' => 'egr', 'FAN02G0174' => 'fan', 'FAN02G3146' => 'fan', 'FAN04G1672' => 'fan', 'FAN04G2273' => 'fan', 'FAN05G2791' => 'fan', 'FAN05G4035' => 'fan', 'FAN07G0834' => 'fan', 'FAN08G1198' => 'fan', 'FAN09G4182' => 'fan', 'FAN12G0496' => 'fan', 'FAN13G1027' => 'fan', 'FAN13G2951' => 'fan', 'FAN14G0705' => 'fan', 'FAN14G0720' => 'fan', 'FAN17G0201' => 'fan', 'FAN17G2665' => 'fan', 'FAN18G1456' => 'fan', 'FAN18G1525' => 'fan', 'FAN18G3500' => 'fan', 'FAN28G2670' => 'fan', 'FvH4_1g12391' => 'fve', 'FvH4_4g23220' => 'fve', 'FvH4_5g08810' => 'fve', 'FvH4_5g28960' => 'fve', 'FvH4_6g42820' => 'fve', 'FvH4_6g51110' => 'fve', 'Glyma.02G051802' => 'gma', 'Glyma.04G185300' => 'gma', 'Glyma.05G202900' => 'gma', 'Glyma.08G010300' => 'gma', 'Glyma.16G131900' => 'gma', 'Glyma.17G087900' => 'gma', 'Gohir.A07G048600' => 'ghi', 'Gohir.A11G179000' => 'ghi', 'Gohir.A12G140900' => 'ghi', 'Gohir.A12G140950' => 'ghi', 'Gohir.A12G191700' => 'ghi', 'Gohir.A13G086300' => 'ghi', 'Gohir.D07G052900' => 'ghi', 'Gohir.D11G186600' => 'ghi', 'Gohir.D12G145575' => 'ghi', 'Gohir.D12G145650' => 'ghi', 'Gohir.D12G145725' => 'ghi', 'Gohir.D12G194050' => 'ghi', 'Gohir.D13G091800' => 'ghi', 'Gorai.001G055900' => 'gra', 'Gorai.007G198400' => 'gra', 'Gorai.008G157000' => 'gra', 'Gorai.008G157100' => 'gra', 'Gorai.008G208700' => 'gra', 'Gorai.010G138700' => 'gra', 'GSVIVG01000977001' => 'vvi', 'GSVIVG01007708001' => 'vvi', 'GSVIVG01008587001' => 'vvi', 'GSVIVG01018849001' => 'vvi', 'GSVIVG01032432001' => 'vvi', 'HanXRQChr02g0034131' => 'han', 'HanXRQChr02g0035981' => 'han', 'HanXRQChr02g0035991' => 'han', 'HanXRQChr05g0155611' => 'han', 'HanXRQChr05g0155621' => 'han', 'HanXRQChr08g0236501' => 'han', 'HanXRQChr09g0261321' => 'han', 'HanXRQChr09g0272081' => 'han', 'HanXRQChr10g0310741' => 'han', 'HanXRQChr11g0325591' => 'han', 'HanXRQChr12g0385691' => 'han', 'HanXRQChr13g0387801' => 'han', 'HanXRQChr15g0463011' => 'han', 'Haze_03826' => 'cav', 'Haze_03827' => 'cav', 'Haze_07183' => 'cav', 'Haze_07537' => 'cav', 'Haze_07539' => 'cav', 'Haze_12461' => 'cav', 'Haze_16115' => 'cav', 'Haze_16808' => 'cav', 'Haze_18531' => 'cav', 'Hma1.2p1_0046F.1_g026700' => 'hma', 'Hma1.2p1_0046F.1_g026710' => 'hma', 'Hma1.2p1_0168F.1_g074340' => 'hma', 'Hma1.2p1_0266F.1_g107030' => 'hma', 'Hma1.2p1_0266F.1_g107060' => 'hma', 'Hma1.2p1_0275F.1_g110510' => 'hma', 'Hma1.2p1_0592F.1_g185490' => 'hma', 'Hma1.2p1_0592F.1_g185500' => 'hma', 'Hma1.2p1_0592F.1_g185510' => 'hma', 'Hma1.2p1_0592F.1_g185520' => 'hma', 'Hma1.2p1_0592F.1_g185530' => 'hma', 'Hma1.2p1_0818F.1_g223450' => 'hma', 'HPP92_009708' => 'vpl', 'HPP92_009793' => 'vpl', 'HPP92_009796' => 'vpl', 'HPP92_009797' => 'vpl', 'HPP92_014940' => 'vpl', 'HPP92_014988' => 'vpl', 'Hund02463' => 'sun', 'Hund02760' => 'sun', 'Hund05071' => 'sun', 'Hund10108' => 'sun', 'Hund11204' => 'sun', 'Hund14016' => 'sun', 'Hund16464' => 'sun', 'Lalb_Chr09g0333391' => 'lal', 'Lalb_Chr11g0070461' => 'lal', 'Lalb_Chr12g0201671' => 'lal', 'Lalb_Chr13g0297161' => 'lal', 'Lj1g0002823' => 'lja', 'Lj3C1074T6' => 'lonja', 'Lj4A212T28' => 'lonja', 'Lj4g0005516' => 'lja', 'Lj4g0013705' => 'lja', 'Lj4g0027865' => 'lja', 'Lj5C92G16' => 'lonja', 'Lj5C92T12' => 'lonja', 'Lj7C596T3' => 'lonja', 'Lj9A446G59' => 'lonja', 'Lj9A482G21' => 'lonja', 'Lsat_1_v5_gn_1_28261' => 'lsa', 'Lsat_1_v5_gn_1_28281' => 'lsa', 'Lsat_1_v5_gn_1_32721' => 'lsa', 'Lsat_1_v5_gn_4_151760' => 'lsa', 'Lsat_1_v5_gn_4_2120' => 'lsa', 'Lsat_1_v5_gn_4_75761' => 'lsa', 'Lsat_1_v5_gn_5_10920' => 'lsa', 'Manes.02G099900' => 'mes', 'Manes.11G096200' => 'mes', 'Manes.12G007200' => 'mes', 'Manes.14G048300' => 'mes', 'Manes.17G114700' => 'mes', 'Mapoly0002s0070' => 'mpo', 'Mapoly0029s0099' => 'mpo', 'MBI07_g24742_MAGBIO' => 'mbi', 'MBI10_g27988_MAGBIO' => 'mbi', 'MBI11_g13057_MAGBIO' => 'mbi', 'MD02G1137200' => 'mdo', 'MD06G1137200' => 'mdo', 'MD07G1122300' => 'mdo', 'MD09G1078200' => 'mdo', 'MD13G1123700' => 'mdo', 'MD14G1151900' => 'mdo', 'MD17G1030900' => 'mdo', 'MD17G1068200' => 'mdo', 'MD17G1068600' => 'mdo', 'Medtr3g077540' => 'mtr', 'Medtr4g105530' => 'mtr', 'Medtr8g076580' => 'mtr', 'Medtr8g076590' => 'mtr', 'Medtr8g096410' => 'mtr', 'MELO3C016411.2' => 'cme', 'MELO3C017780.2' => 'cme', 'MELO3C022560.2' => 'cme', 'MELO3C026187.2' => 'cme', 'MELO3C026286.2' => 'cme', 'MELO3C032854.2' => 'cme', 'Migut.H02495' => 'egut', 'Migut.I00561' => 'egut', 'Migut.K01015' => 'egut', 'Migut.K01016' => 'egut', 'Migut.L00743' => 'egut', 'Migut.L00744' => 'egut', 'Migut.L00746' => 'egut', 'Migut.L00798' => 'egut', 'Migut.L00799' => 'egut', 'Migut.N02096' => 'egut', 'MSTRG.11259' => 'ama', 'MSTRG.23142' => 'ama', 'MSTRG.2499' => 'ama', 'Nitab4.5_0000003g0730' => 'nta', 'Nitab4.5_0000137g0020' => 'nta', 'Nitab4.5_0000721g0210' => 'nta', 'Nitab4.5_0000723g0050' => 'nta', 'Nitab4.5_0000913g0070' => 'nta', 'Nitab4.5_0001332g0040' => 'nta', 'Nitab4.5_0001771g0050' => 'nta', 'Nitab4.5_0001918g0050' => 'nta', 'Nitab4.5_0002686g0030' => 'nta', 'Nitab4.5_0003156g0020' => 'nta', 'Nitab4.5_0003383g0040' => 'nta', 'Nitab4.5_0003918g0010' => 'nta', 'Nitab4.5_0006760g0010' => 'nta', 'Nn1g05981' => 'nnu', 'Nn1g06288' => 'nnu', 'Nn3g16371' => 'nnu', 'Nn3g16786' => 'nnu', 'Nn4g22232' => 'nnu', 'Oeu005144.1' => 'oeu', 'Oeu005145.1' => 'oeu', 'Oeu011348.1' => 'oeu', 'Oeu016415.1' => 'oeu', 'Oeu023501.1' => 'oeu', 'Oeu044473.1' => 'oeu', 'Oeu048892.2' => 'oeu', 'Os01g0549200' => 'osa', 'Os02g0469300' => 'osa', 'Os04g0311100' => 'osa', 'Os06g0474900' => 'osa', 'Os10g0181700' => 'osa', 'Os11g0454800' => 'osa', 'Peaxi162Scf00037g00714' => 'pax', 'Peaxi162Scf00084g01217' => 'pax', 'Peaxi162Scf00257g00217' => 'pax', 'Peaxi162Scf00516g00215' => 'pax', 'Peaxi162Scf00689g00123' => 'pax', 'PGR044G2719' => 'pgr', 'PGR083G1360' => 'pgr', 'PGR102G2849' => 'pgr', 'PGR119G2534' => 'pgr', 'PGSC0003DMG400003538' => 'stu', 'PGSC0003DMG400028138' => 'stu', 'PGSC0003DMG400031732' => 'stu', 'PGSC0003DMG400038165' => 'stu', 'Phvul.002G284600' => 'pvu', 'Phvul.003G258200' => 'pvu', 'Phvul.009G176500' => 'pvu', 'Potri.003G167201' => 'ptr', 'Potri.005G118400' => 'ptr', 'Potri.012G089000' => 'ptr', 'Potri.012G102800' => 'ptr', 'Potri.015G079400' => 'ptr', 'Potri.015G100900' => 'ptr', 'Pp3c14_9810' => 'ppa', 'Pp3c15_10450' => 'ppa', 'Pp3c20_19150' => 'ppa', 'Pp3c23_12740' => 'ppa', 'Pp3c23_6310' => 'ppa', 'Pp3c24_3720' => 'ppa', 'Pp3c27_2580' => 'ppa', 'Pp3c9_8990' => 'ppa', 'PRCOL_00002854' => 'pco', 'Prupe.1G221200' => 'ppe', 'Prupe.3G289000' => 'ppe', 'Prupe.5G147000' => 'ppe', 'Prupe.6G157300' => 'ppe', 'Prupe.7G163400' => 'ppe', 'Psat0s2177g0040' => 'psa', 'Psat3g174760' => 'psa', 'Psat3g192160' => 'psa', 'Psat4g058520' => 'psa', 'Psat4g096840' => 'psa', 'Psat7g037320' => 'psa', 'PSO017G1274' => 'pso', 'PSO017G5166' => 'pso', 'PSO063G4558' => 'pso', 'PSO170G4458' => 'pso', 'PSO170G5005' => 'pso', 'PSO210G6156' => 'pso', 'PSO210G6635' => 'pso', 'PSO210G7397' => 'pso', 'PSO210G7700' => 'pso', 'PSO455G0035' => 'pso', 'PSO455G0180' => 'pso', 'PSO478G4515' => 'pso', 'PSO832G1305' => 'pso', 'PSO832G3489' => 'pso', 'QL02p075247' => 'qlo', 'QL03p051148' => 'qlo', 'QL05p010313' => 'qlo', 'QL06p034627' => 'qlo', 'QL10p001889' => 'qlo', 'QL10p010846' => 'qlo', 'RcHm_v2.0_Chr1g0350621' => 'rch', 'RcHm_v2.0_Chr1g0350641' => 'rch', 'RcHm_v2.0_Chr2g0092891' => 'rch', 'RcHm_v2.0_Chr2g0100251' => 'rch', 'RcHm_v2.0_Chr2g0158661' => 'rch', 'RcHm_v2.0_Chr2g0172741' => 'rch', 'RcHm_v2.0_Chr4g0429571' => 'rch', 'RcHm_v2.0_Chr5g0042471' => 'rch', 'RcHm_v2.0_Chr7g0189451' => 'rch', 'Rhsim08G0052000' => 'rsi', 'Rhsim08G0174400' => 'rsi', 'Rhsim08G0193200' => 'rsi', 'Rhsim10G0214800' => 'rsi', 'Rhsim10G0214900' => 'rsi', 'Rhsim10G0215000' => 'rsi', 'Rhsim12G0022900' => 'rsi', 'Rhsim12G0177500' => 'rsi', 'Rhsim12G0177700' => 'rsi', 'Sabra03G0122600' => 'sbr', 'Sabra05G0097400' => 'sbr', 'Sabra12G0064100' => 'sbr', 'Sabra15G0121300' => 'sbr', 'SalBow2G0642' => 'sbo', 'SalBow5G2667' => 'sbo', 'SalBow5G4873' => 'sbo', 'SalBow8G2395' => 'sbo', 'Sc03g0003290' => 'sci', 'Sc10g0010130' => 'sci', 'Sc22g0003650' => 'sci', 'Sed0001603' => 'sed', 'Sed0004259' => 'sed', 'Sed0006789' => 'sed', 'Sed0011838' => 'sed', 'Sed0012964' => 'sed', 'Sed0016383' => 'sed', 'Sed0019010' => 'sed', 'Sed0020188' => 'sed', 'SEGI_04702' => 'sgi', 'SEGI_17231' => 'sgi', 'SEGI_18877' => 'sgi', 'SEGI_25196' => 'sgi', 'SEGI_25515' => 'sgi', 'SEGI_28445' => 'sgi', 'SEGI_37452' => 'sgi', 'SGA_v2.0_scaffold188G40336' => 'sas', 'SGA_v2.0_scaffold228G43247' => 'sas', 'SGA_v2.0_scaffold280G46853' => 'sas', 'SGA_v2.0_scaffold34G13808' => 'sas', 'SGA_v2.0_scaffold40G15576' => 'sas', 'SGA_v2.0_scaffold611G53188' => 'sas', 'SGA_v2.0_scaffold78G25461' => 'sas', 'SGA_v2.0_scaffold90G27888' => 'sas', 'SHI08601' => 'shi', 'SHI08606' => 'shi', 'SHI17117' => 'shi', 'SHI17119' => 'shi', 'SMO118G0201' => 'smo', 'SMO169G0247' => 'smo', 'SMO176G0006' => 'smo', 'SMO176G0015' => 'smo', 'SMO202G0006' => 'smo', 'SMO240G0050' => 'smo', 'SMO286G0009' => 'smo', 'SMO338G0033' => 'smo', 'SMO356G0533' => 'smo', 'SMO364G0382' => 'smo', 'SMO367G0166' => 'smo', 'SMO367G1098' => 'smo', 'Solyc01g009920.3' => 'sly', 'Solyc01g099300.3' => 'sly', 'Solyc02g084700.3' => 'sly', 'Solyc03g097520.3' => 'sly', 'Solyc06g071580.3' => 'sly', 'Solyc10g081760.3' => 'sly', 'Sopen01g005480' => 'spe', 'Sopen01g042850' => 'spe', 'Sopen02g029370' => 'spe', 'Sopen03g028280' => 'spe', 'Sopen06g027870' => 'spe', 'Sopen10g032270' => 'spe', 'Sp5g18180' => 'spa', 'Sp6g12880' => 'spa', 'Sp6g30850' => 'spa', 'Sp7g22960' => 'spa', 'Sp7g34010' => 'spa', 'SpUn1326_0010' => 'spa', 'TAR371G0242' => 'tar', 'TAR622G0638' => 'tar', 'TAR628G1548' => 'tar', 'TAR629G1079' => 'tar', 'TAR629G3413' => 'tar', 'THA.LOC104804249' => 'tha', 'THA.LOC104808315' => 'tha', 'THA.LOC104809238' => 'tha', 'THA.LOC104825484' => 'tha', 'Thecc.01G025500' => 'tca', 'Thecc.03G015800' => 'tca', 'Thecc.03G018000' => 'tca', 'Thecc.03G134800' => 'tca', 'Thecc.04G014700' => 'tca', 'Thhalv10006991m.g' => 'esa', 'Thhalv10012707m.g' => 'esa', 'Thhalv10015739m.g' => 'esa', 'Thhalv10024553m.g' => 'esa', 'Thhalv10024673m.g' => 'esa', 'Thhalv10029187m.g' => 'esa', 'TPR.G12971' => 'tpr', 'TPR.G29396' => 'tpr', 'TPR.G33376' => 'tpr', 'TPR.G35508' => 'tpr', 'TPR.G35516' => 'tpr', 'TPR.G37317' => 'tpr', 'TPR.G37389' => 'tpr', 'TPR.G37523' => 'tpr', 'TPR.G559' => 'tpr', 'TWI14G0070' => 'twi', 'TWI14G0729' => 'twi', 'TWI18G0596' => 'twi', 'TWI39G0780' => 'twi', 'TWI39G0850' => 'twi', 'TWI73G1052' => 'twi', 'unitig_52.g17485' => 'ugi', 'unitig_61.g26355' => 'ugi', 'vmacro01040' => 'vma', 'vmacro16731' => 'vma', 'vmacro18270' => 'vma', 'vmacro19142' => 'vma', 'vmacro19407' => 'vma', 'vmacro19408' => 'vma', 'vmacro21899' => 'vma', 'vmacro21900' => 'vma', 'vmacro21901' => 'vma', 'VMungo0251G0490' => 'vmu', 'VMungo0251G1748' => 'vmu', 'VMungo1309G0421' => 'vmu', 'Zm00001eb086500' => 'zma', 'Zm00001eb150680' => 'zma', 'Zm00001eb162330' => 'zma', 'Zm00001eb203130' => 'zma', 'Zm00001eb369480' => 'zma', 'Zm00001eb382340' => 'zma', 'Zm00001eb416360' => 'zma' ), 'gf_id' => 'HOM05D000902', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000902' ), 'data_identifier' => 'HOM05D000902', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000902', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '663', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02470' => 'bna', 'A01p16260' => 'bna', 'A02p01680' => 'bna', 'A03p16600' => 'bna', 'A03p55660' => 'bna', 'A03p64160' => 'bna', 'A03p64170' => 'bna', 'A08p31900' => 'bna', 'A09p59530' => 'bna', 'A10p08230' => 'bna', 'A10p25090' => 'bna', 'Aa31LG3G7100' => 'aar', 'Aa31LG3G7110' => 'aar', 'Aa31LG6G13160' => 'aar', 'Aa31LG7G10770' => 'aar', 'Aa31LG7G3830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2723' => 'aag', 'Actinidia08045' => 'ach', 'Actinidia08888' => 'ach', 'Actinidia18333' => 'ach', 'Actinidia19334' => 'ach', 'Actinidia25552' => 'ach', 'Actinidia26089' => 'ach', 'Actinidia30615' => 'ach', 'Actinidia30616' => 'ach', 'Actinidia33083' => 'ach', 'Actinidia35762' => 'ach', 'Ah.02g110620' => 'amhyb', 'Ah.11g046390' => 'amhyb', 'AL1G31670' => 'aly', 'AL6G23730' => 'aly', 'AL7G14740' => 'aly', 'AL7G14750' => 'aly', 'AL7G14760' => 'aly', 'AL7G28220' => 'aly', 'AL8G24940' => 'aly', 'Aqoxy3G01665' => 'aox', 'Aqoxy3G02853' => 'aox', 'Aqoxy5G01513' => 'aox', 'Aqoxy5G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8SKA4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ75LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKDA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0LJZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7REX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZP4YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWX7I5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2QKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS0L9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPCD8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q161UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC7XCF' => 'arhy', 'AT1G19100' => 'ath', 'AT4G24970' => 'ath', 'AT4G36270' => 'ath', 'AT4G36280' => 'ath', 'AT4G36290' => 'ath', 'AT5G13130' => 'ath', 'AT5G50780' => 'ath', 'ATR0582G266' => 'atr', 'ATR0661G195' => 'atr', 'ATR1152G031' => 'atr', 'Atru.chr11.2382' => 'acertr', 'Atru.chr12.2337' => 'acertr', 'Atru.chr3.744' => 'acertr', 'Atru.chr6.1870' => 'acertr', 'Atru.chr9.2515' => 'acertr', 'AUR62004120' => 'cqu', 'AUR62005667' => 'cqu', 'AUR62007634' => 'cqu', 'AUR62008186' => 'cqu', 'AUR62008187' => 'cqu', 'AUR62008188' => 'cqu', 'AUR62027954' => 'cqu', 'AUR62028766' => 'cqu', 'AUR62028767' => 'cqu', 'AUR62028768' => 'cqu', 'AUR62028886' => 'cqu', 'AUR62029563' => 'cqu', 'AUR62038832' => 'cqu', 'BcaB01g04149' => 'bca', 'BcaB03g12940' => 'bca', 'BcaB03g13090' => 'bca', 'BcaB03g14466' => 'bca', 'BcaB05g24035' => 'bca', 'BcaC01g06050' => 'bca', 'BcaC04g19148' => 'bca', 'BcaC04g20761' => 'bca', 'BcaC06g32845' => 'bca', 'BcaC07g41274' => 'bca', 'BcaC09g50827' => 'bca', 'BcaNung00741' => 'bca', 'BcaNung00742' => 'bca', 'BcaNung01859' => 'bca', 'BcaNung03985' => 'bca', 'BcaNung03989' => 'bca', 'BcaNung05661' => 'bca', 'BolC1t00257H' => 'bol', 'BolC1t01956H' => 'bol', 'BolC2t06534H' => 'bol', 'BolC3t14334H' => 'bol', 'BolC5t30451H' => 'bol', 'BolC7t45880H' => 'bol', 'BolC7t46586H' => 'bol', 'BolC8t49301H' => 'bol', 'BolC8t51837H' => 'bol', 'BolC9t56822H' => 'bol', 'BolC9t59235H' => 'bol', 'BraA01t00234Z' => 'bra', 'BraA01t01563Z' => 'bra', 'BraA02t05147Z' => 'bra', 'BraA03t10947Z' => 'bra', 'BraA03t14633Z' => 'bra', 'BraA08t35112Z' => 'bra', 'BraA09t41330Z' => 'bra', 'BraA10t44570Z' => 'bra', 'C01p02670' => 'bna', 'C01p20260' => 'bna', 'C02p05890' => 'bna', 'C03p19530' => 'bna', 'C05p17470' => 'bna', 'C07p53900' => 'bna', 'C07p61630' => 'bna', 'C08p16800' => 'bna', 'C08p42810' => 'bna', 'C09p39480' => 'bna', 'C09p63980' => 'bna', 'CAN.G1001.7' => 'can', 'CAN.G1034.55' => 'can', 'CAN.G143.7' => 'can', 'CAN.G3340.1' => 'can', 'CAN.G358.19' => 'can', 'CAN.G373.2' => 'can', 'CAN.G674.16' => 'can', 'CAN.G674.17' => 'can', 'CAN.G674.18' => 'can', 'CAN.G732.2' => 'can', 'CAN.G732.3' => 'can', 'CAN.G993.39' => 'can', 'CANSAT01G2052' => 'cansat', 'CANSAT80G0070' => 'cansat', 'CANSAT80G0483' => 'cansat', 'CANSAT80G0625' => 'cansat', 'CARHR019690' => 'chi', 'CARHR080280' => 'chi', 'CARHR152750' => 'chi', 'CARHR152760' => 'chi', 'CARHR152770' => 'chi', 'CARHR200340' => 'chi', 'CARHR232370' => 'chi', 'CARHR244670' => 'chi', 'CARHR244680' => 'chi', 'CARHR257520' => 'chi', 'Carub.0001s1872' => 'cru', 'Carub.0006s1130' => 'cru', 'Carub.0007s0396' => 'cru', 'Carub.0007s0397' => 'cru', 'Carub.0007s1608' => 'cru', 'Carub.0008s1068' => 'cru', 'Carub.0008s1077' => 'cru', 'Ca_16158_v3' => 'car', 'Ca_17571_v3' => 'car', 'Ca_21936_v3' => 'car', 'Ca_22350_v3' => 'car', 'CBR_g22445' => 'cbr', 'CBR_g26290' => 'cbr', 'Cc04_g09610' => 'ccan', 'Cc04_g12280' => 'ccan', 'Cc07_g10230' => 'ccan', 'CDE02G0093' => 'cde', 'CDE02G0701' => 'cde', 'CDE04G1050' => 'cde', 'CDE05G1833' => 'cde', 'CDE05G3058' => 'cde', 'CDE05G3380' => 'cde', 'CDE06G0536' => 'cde', 'Cfa006923' => 'cfa', 'Cfa009402' => 'cfa', 'Cfa018751' => 'cfa', 'Cfa019164' => 'cfa', 'Cfa022935' => 'cfa', 'Ciclev10019081m.g' => 'ccl', 'Ciclev10025076m.g' => 'ccl', 'Ciclev10030712m.g' => 'ccl', 'Ciclev10033760m.g' => 'ccl', 'CiPaw.05G105600' => 'cil', 'CiPaw.08G136700' => 'cil', 'CiPaw.11G003900' => 'cil', 'CiPaw.11G023700' => 'cil', 'CiPaw.12G003700' => 'cil', 'ClCG06G017100' => 'cla', 'ClCG06G018110' => 'cla', 'ClCG07G008800' => 'cla', 'ClCG07G015330' => 'cla', 'COL.COLO4_13698' => 'col', 'COL.COLO4_16659' => 'col', 'COL.COLO4_21986' => 'col', 'COL.COLO4_24049' => 'col', 'COL.COLO4_29061' => 'col', 'COL.COLO4_29075' => 'col', 'COL.COLO4_30094' => 'col', 'Cpa.g.c33689' => 'cpa', 'Cpa.g.sc108.39' => 'cpa', 'Cpa.g.sc108.41' => 'cpa', 'Cpa.g.sc1163.1' => 'cpa', 'Cpa.g.sc4.155' => 'cpa', 'Cpa.g.sc6.194' => 'cpa', 'CsaV3_1G000340' => 'csa', 'CsaV3_1G001400' => 'csa', 'CsaV3_4G002220' => 'csa', 'CsaV3_4G005370' => 'csa', 'CSS0007487' => 'camsi', 'CSS0008066' => 'camsi', 'CSS0009120' => 'camsi', 'CSS0015512' => 'camsi', 'CSS0022409' => 'camsi', 'CSS0025358' => 'camsi', 'CSS0044547' => 'camsi', 'DCAR_013057' => 'dca', 'DCAR_015058' => 'dca', 'DCAR_016027' => 'dca', 'DCAR_017327' => 'dca', 'DCAR_020743' => 'dca', 'DCAR_026157' => 'dca', 'DCAR_032339' => 'dca', 'DCAR_032340' => 'dca', 'Dinv11200' => 'din', 'Dinv11201' => 'din', 'Dinv20631' => 'din', 'Dinv23182' => 'din', 'Dinv33466' => 'din', 'Dinv33583' => 'din', 'Dinv38565' => 'din', 'Duzib068G0200' => 'dzi', 'Duzib147G0132' => 'dzi', 'Duzib147G0635' => 'dzi', 'Duzib205G1670' => 'dzi', 'Duzib251G0606' => 'dzi', 'ECA232G3336' => 'eca', 'ECA232G3763' => 'eca', 'ECA232G4845' => 'eca', 'ECA234G1607' => 'eca', 'ECA246G0932' => 'eca', 'ECA247G0781' => 'eca', 'ECA247G1932' => 'eca', 'ECA247G2079' => 'eca', 'ECA247G3338' => 'eca', 'ECA247G4115' => 'eca', 'EL10Ac3g06552' => 'bvu', 'EL10Ac5g10721' => 'bvu', 'EL10Ac5g10722' => 'bvu', 'EL10Ac5g10723' => 'bvu', 'EL10Ac5g11361' => 'bvu', 'EL10Ac6g13553' => 'bvu', 'EL10As8g23872' => 'bvu', 'Eucgr.B00250' => 'egr', 'Eucgr.B00251' => 'egr', 'Eucgr.B03533' => 'egr', 'Eucgr.I02381' => 'egr', 'Eucgr.K02700' => 'egr', 'FAN02G0174' => 'fan', 'FAN02G3146' => 'fan', 'FAN04G1672' => 'fan', 'FAN04G2273' => 'fan', 'FAN05G2791' => 'fan', 'FAN05G4035' => 'fan', 'FAN07G0834' => 'fan', 'FAN08G1198' => 'fan', 'FAN09G4182' => 'fan', 'FAN12G0496' => 'fan', 'FAN13G1027' => 'fan', 'FAN13G2951' => 'fan', 'FAN14G0705' => 'fan', 'FAN14G0720' => 'fan', 'FAN17G0201' => 'fan', 'FAN17G2665' => 'fan', 'FAN18G1456' => 'fan', 'FAN18G1525' => 'fan', 'FAN18G3500' => 'fan', 'FAN28G2670' => 'fan', 'FvH4_1g12391' => 'fve', 'FvH4_4g23220' => 'fve', 'FvH4_5g08810' => 'fve', 'FvH4_5g28960' => 'fve', 'FvH4_6g42820' => 'fve', 'FvH4_6g51110' => 'fve', 'Glyma.02G051802' => 'gma', 'Glyma.04G185300' => 'gma', 'Glyma.05G202900' => 'gma', 'Glyma.08G010300' => 'gma', 'Glyma.16G131900' => 'gma', 'Glyma.17G087900' => 'gma', 'Gohir.A07G048600' => 'ghi', 'Gohir.A11G179000' => 'ghi', 'Gohir.A12G140900' => 'ghi', 'Gohir.A12G140950' => 'ghi', 'Gohir.A12G191700' => 'ghi', 'Gohir.A13G086300' => 'ghi', 'Gohir.D07G052900' => 'ghi', 'Gohir.D11G186600' => 'ghi', 'Gohir.D12G145575' => 'ghi', 'Gohir.D12G145650' => 'ghi', 'Gohir.D12G145725' => 'ghi', 'Gohir.D12G194050' => 'ghi', 'Gohir.D13G091800' => 'ghi', 'Gorai.001G055900' => 'gra', 'Gorai.007G198400' => 'gra', 'Gorai.008G157000' => 'gra', 'Gorai.008G157100' => 'gra', 'Gorai.008G208700' => 'gra', 'Gorai.010G138700' => 'gra', 'GSVIVG01000977001' => 'vvi', 'GSVIVG01007708001' => 'vvi', 'GSVIVG01008587001' => 'vvi', 'GSVIVG01018849001' => 'vvi', 'GSVIVG01032432001' => 'vvi', 'HanXRQChr02g0034131' => 'han', 'HanXRQChr02g0035981' => 'han', 'HanXRQChr02g0035991' => 'han', 'HanXRQChr05g0155611' => 'han', 'HanXRQChr05g0155621' => 'han', 'HanXRQChr08g0236501' => 'han', 'HanXRQChr09g0261321' => 'han', 'HanXRQChr09g0272081' => 'han', 'HanXRQChr10g0310741' => 'han', 'HanXRQChr11g0325591' => 'han', 'HanXRQChr12g0385691' => 'han', 'HanXRQChr13g0387801' => 'han', 'HanXRQChr15g0463011' => 'han', 'Haze_03826' => 'cav', 'Haze_03827' => 'cav', 'Haze_07183' => 'cav', 'Haze_07537' => 'cav', 'Haze_07539' => 'cav', 'Haze_12461' => 'cav', 'Haze_16115' => 'cav', 'Haze_16808' => 'cav', 'Haze_18531' => 'cav', 'Hma1.2p1_0046F.1_g026700' => 'hma', 'Hma1.2p1_0046F.1_g026710' => 'hma', 'Hma1.2p1_0168F.1_g074340' => 'hma', 'Hma1.2p1_0266F.1_g107030' => 'hma', 'Hma1.2p1_0266F.1_g107060' => 'hma', 'Hma1.2p1_0275F.1_g110510' => 'hma', 'Hma1.2p1_0592F.1_g185490' => 'hma', 'Hma1.2p1_0592F.1_g185500' => 'hma', 'Hma1.2p1_0592F.1_g185510' => 'hma', 'Hma1.2p1_0592F.1_g185520' => 'hma', 'Hma1.2p1_0592F.1_g185530' => 'hma', 'Hma1.2p1_0818F.1_g223450' => 'hma', 'HPP92_009708' => 'vpl', 'HPP92_009793' => 'vpl', 'HPP92_009796' => 'vpl', 'HPP92_009797' => 'vpl', 'HPP92_014940' => 'vpl', 'HPP92_014988' => 'vpl', 'Hund02463' => 'sun', 'Hund02760' => 'sun', 'Hund05071' => 'sun', 'Hund10108' => 'sun', 'Hund11204' => 'sun', 'Hund14016' => 'sun', 'Hund16464' => 'sun', 'Lalb_Chr09g0333391' => 'lal', 'Lalb_Chr11g0070461' => 'lal', 'Lalb_Chr12g0201671' => 'lal', 'Lalb_Chr13g0297161' => 'lal', 'Lj1g0002823' => 'lja', 'Lj3C1074T6' => 'lonja', 'Lj4A212T28' => 'lonja', 'Lj4g0005516' => 'lja', 'Lj4g0013705' => 'lja', 'Lj4g0027865' => 'lja', 'Lj5C92G16' => 'lonja', 'Lj5C92T12' => 'lonja', 'Lj7C596T3' => 'lonja', 'Lj9A446G59' => 'lonja', 'Lj9A482G21' => 'lonja', 'Lsat_1_v5_gn_1_28261' => 'lsa', 'Lsat_1_v5_gn_1_28281' => 'lsa', 'Lsat_1_v5_gn_1_32721' => 'lsa', 'Lsat_1_v5_gn_4_151760' => 'lsa', 'Lsat_1_v5_gn_4_2120' => 'lsa', 'Lsat_1_v5_gn_4_75761' => 'lsa', 'Lsat_1_v5_gn_5_10920' => 'lsa', 'Manes.02G099900' => 'mes', 'Manes.11G096200' => 'mes', 'Manes.12G007200' => 'mes', 'Manes.14G048300' => 'mes', 'Manes.17G114700' => 'mes', 'Mapoly0002s0070' => 'mpo', 'Mapoly0029s0099' => 'mpo', 'MBI07_g24742_MAGBIO' => 'mbi', 'MBI10_g27988_MAGBIO' => 'mbi', 'MBI11_g13057_MAGBIO' => 'mbi', 'MD02G1137200' => 'mdo', 'MD06G1137200' => 'mdo', 'MD07G1122300' => 'mdo', 'MD09G1078200' => 'mdo', 'MD13G1123700' => 'mdo', 'MD14G1151900' => 'mdo', 'MD17G1030900' => 'mdo', 'MD17G1068200' => 'mdo', 'MD17G1068600' => 'mdo', 'Medtr3g077540' => 'mtr', 'Medtr4g105530' => 'mtr', 'Medtr8g076580' => 'mtr', 'Medtr8g076590' => 'mtr', 'Medtr8g096410' => 'mtr', 'MELO3C016411.2' => 'cme', 'MELO3C017780.2' => 'cme', 'MELO3C022560.2' => 'cme', 'MELO3C026187.2' => 'cme', 'MELO3C026286.2' => 'cme', 'MELO3C032854.2' => 'cme', 'Migut.H02495' => 'egut', 'Migut.I00561' => 'egut', 'Migut.K01015' => 'egut', 'Migut.K01016' => 'egut', 'Migut.L00743' => 'egut', 'Migut.L00744' => 'egut', 'Migut.L00746' => 'egut', 'Migut.L00798' => 'egut', 'Migut.L00799' => 'egut', 'Migut.N02096' => 'egut', 'MSTRG.11259' => 'ama', 'MSTRG.23142' => 'ama', 'MSTRG.2499' => 'ama', 'Nitab4.5_0000003g0730' => 'nta', 'Nitab4.5_0000137g0020' => 'nta', 'Nitab4.5_0000721g0210' => 'nta', 'Nitab4.5_0000723g0050' => 'nta', 'Nitab4.5_0000913g0070' => 'nta', 'Nitab4.5_0001332g0040' => 'nta', 'Nitab4.5_0001771g0050' => 'nta', 'Nitab4.5_0001918g0050' => 'nta', 'Nitab4.5_0002686g0030' => 'nta', 'Nitab4.5_0003156g0020' => 'nta', 'Nitab4.5_0003383g0040' => 'nta', 'Nitab4.5_0003918g0010' => 'nta', 'Nitab4.5_0006760g0010' => 'nta', 'Nn1g05981' => 'nnu', 'Nn1g06288' => 'nnu', 'Nn3g16371' => 'nnu', 'Nn3g16786' => 'nnu', 'Nn4g22232' => 'nnu', 'Oeu005144.1' => 'oeu', 'Oeu005145.1' => 'oeu', 'Oeu011348.1' => 'oeu', 'Oeu016415.1' => 'oeu', 'Oeu023501.1' => 'oeu', 'Oeu044473.1' => 'oeu', 'Oeu048892.2' => 'oeu', 'Os01g0549200' => 'osa', 'Os02g0469300' => 'osa', 'Os04g0311100' => 'osa', 'Os06g0474900' => 'osa', 'Os10g0181700' => 'osa', 'Os11g0454800' => 'osa', 'Peaxi162Scf00037g00714' => 'pax', 'Peaxi162Scf00084g01217' => 'pax', 'Peaxi162Scf00257g00217' => 'pax', 'Peaxi162Scf00516g00215' => 'pax', 'Peaxi162Scf00689g00123' => 'pax', 'PGR044G2719' => 'pgr', 'PGR083G1360' => 'pgr', 'PGR102G2849' => 'pgr', 'PGR119G2534' => 'pgr', 'PGSC0003DMG400003538' => 'stu', 'PGSC0003DMG400028138' => 'stu', 'PGSC0003DMG400031732' => 'stu', 'PGSC0003DMG400038165' => 'stu', 'Phvul.002G284600' => 'pvu', 'Phvul.003G258200' => 'pvu', 'Phvul.009G176500' => 'pvu', 'Potri.003G167201' => 'ptr', 'Potri.005G118400' => 'ptr', 'Potri.012G089000' => 'ptr', 'Potri.012G102800' => 'ptr', 'Potri.015G079400' => 'ptr', 'Potri.015G100900' => 'ptr', 'Pp3c14_9810' => 'ppa', 'Pp3c15_10450' => 'ppa', 'Pp3c20_19150' => 'ppa', 'Pp3c23_12740' => 'ppa', 'Pp3c23_6310' => 'ppa', 'Pp3c24_3720' => 'ppa', 'Pp3c27_2580' => 'ppa', 'Pp3c9_8990' => 'ppa', 'PRCOL_00002854' => 'pco', 'Prupe.1G221200' => 'ppe', 'Prupe.3G289000' => 'ppe', 'Prupe.5G147000' => 'ppe', 'Prupe.6G157300' => 'ppe', 'Prupe.7G163400' => 'ppe', 'Psat0s2177g0040' => 'psa', 'Psat3g174760' => 'psa', 'Psat3g192160' => 'psa', 'Psat4g058520' => 'psa', 'Psat4g096840' => 'psa', 'Psat7g037320' => 'psa', 'PSO017G1274' => 'pso', 'PSO017G5166' => 'pso', 'PSO063G4558' => 'pso', 'PSO170G4458' => 'pso', 'PSO170G5005' => 'pso', 'PSO210G6156' => 'pso', 'PSO210G6635' => 'pso', 'PSO210G7397' => 'pso', 'PSO210G7700' => 'pso', 'PSO455G0035' => 'pso', 'PSO455G0180' => 'pso', 'PSO478G4515' => 'pso', 'PSO832G1305' => 'pso', 'PSO832G3489' => 'pso', 'QL02p075247' => 'qlo', 'QL03p051148' => 'qlo', 'QL05p010313' => 'qlo', 'QL06p034627' => 'qlo', 'QL10p001889' => 'qlo', 'QL10p010846' => 'qlo', 'RcHm_v2.0_Chr1g0350621' => 'rch', 'RcHm_v2.0_Chr1g0350641' => 'rch', 'RcHm_v2.0_Chr2g0092891' => 'rch', 'RcHm_v2.0_Chr2g0100251' => 'rch', 'RcHm_v2.0_Chr2g0158661' => 'rch', 'RcHm_v2.0_Chr2g0172741' => 'rch', 'RcHm_v2.0_Chr4g0429571' => 'rch', 'RcHm_v2.0_Chr5g0042471' => 'rch', 'RcHm_v2.0_Chr7g0189451' => 'rch', 'Rhsim08G0052000' => 'rsi', 'Rhsim08G0174400' => 'rsi', 'Rhsim08G0193200' => 'rsi', 'Rhsim10G0214800' => 'rsi', 'Rhsim10G0214900' => 'rsi', 'Rhsim10G0215000' => 'rsi', 'Rhsim12G0022900' => 'rsi', 'Rhsim12G0177500' => 'rsi', 'Rhsim12G0177700' => 'rsi', 'Sabra03G0122600' => 'sbr', 'Sabra05G0097400' => 'sbr', 'Sabra12G0064100' => 'sbr', 'Sabra15G0121300' => 'sbr', 'SalBow2G0642' => 'sbo', 'SalBow5G2667' => 'sbo', 'SalBow5G4873' => 'sbo', 'SalBow8G2395' => 'sbo', 'Sc03g0003290' => 'sci', 'Sc10g0010130' => 'sci', 'Sc22g0003650' => 'sci', 'Sed0001603' => 'sed', 'Sed0004259' => 'sed', 'Sed0006789' => 'sed', 'Sed0011838' => 'sed', 'Sed0012964' => 'sed', 'Sed0016383' => 'sed', 'Sed0019010' => 'sed', 'Sed0020188' => 'sed', 'SEGI_04702' => 'sgi', 'SEGI_17231' => 'sgi', 'SEGI_18877' => 'sgi', 'SEGI_25196' => 'sgi', 'SEGI_25515' => 'sgi', 'SEGI_28445' => 'sgi', 'SEGI_37452' => 'sgi', 'SGA_v2.0_scaffold188G40336' => 'sas', 'SGA_v2.0_scaffold228G43247' => 'sas', 'SGA_v2.0_scaffold280G46853' => 'sas', 'SGA_v2.0_scaffold34G13808' => 'sas', 'SGA_v2.0_scaffold40G15576' => 'sas', 'SGA_v2.0_scaffold611G53188' => 'sas', 'SGA_v2.0_scaffold78G25461' => 'sas', 'SGA_v2.0_scaffold90G27888' => 'sas', 'SHI08601' => 'shi', 'SHI08606' => 'shi', 'SHI17117' => 'shi', 'SHI17119' => 'shi', 'SMO118G0201' => 'smo', 'SMO169G0247' => 'smo', 'SMO176G0006' => 'smo', 'SMO176G0015' => 'smo', 'SMO202G0006' => 'smo', 'SMO240G0050' => 'smo', 'SMO286G0009' => 'smo', 'SMO338G0033' => 'smo', 'SMO356G0533' => 'smo', 'SMO364G0382' => 'smo', 'SMO367G0166' => 'smo', 'SMO367G1098' => 'smo', 'Solyc01g009920.3' => 'sly', 'Solyc01g099300.3' => 'sly', 'Solyc02g084700.3' => 'sly', 'Solyc03g097520.3' => 'sly', 'Solyc06g071580.3' => 'sly', 'Solyc10g081760.3' => 'sly', 'Sopen01g005480' => 'spe', 'Sopen01g042850' => 'spe', 'Sopen02g029370' => 'spe', 'Sopen03g028280' => 'spe', 'Sopen06g027870' => 'spe', 'Sopen10g032270' => 'spe', 'Sp5g18180' => 'spa', 'Sp6g12880' => 'spa', 'Sp6g30850' => 'spa', 'Sp7g22960' => 'spa', 'Sp7g34010' => 'spa', 'SpUn1326_0010' => 'spa', 'TAR371G0242' => 'tar', 'TAR622G0638' => 'tar', 'TAR628G1548' => 'tar', 'TAR629G1079' => 'tar', 'TAR629G3413' => 'tar', 'THA.LOC104804249' => 'tha', 'THA.LOC104808315' => 'tha', 'THA.LOC104809238' => 'tha', 'THA.LOC104825484' => 'tha', 'Thecc.01G025500' => 'tca', 'Thecc.03G015800' => 'tca', 'Thecc.03G018000' => 'tca', 'Thecc.03G134800' => 'tca', 'Thecc.04G014700' => 'tca', 'Thhalv10006991m.g' => 'esa', 'Thhalv10012707m.g' => 'esa', 'Thhalv10015739m.g' => 'esa', 'Thhalv10024553m.g' => 'esa', 'Thhalv10024673m.g' => 'esa', 'Thhalv10029187m.g' => 'esa', 'TPR.G12971' => 'tpr', 'TPR.G29396' => 'tpr', 'TPR.G33376' => 'tpr', 'TPR.G35508' => 'tpr', 'TPR.G35516' => 'tpr', 'TPR.G37317' => 'tpr', 'TPR.G37389' => 'tpr', 'TPR.G37523' => 'tpr', 'TPR.G559' => 'tpr', 'TWI14G0070' => 'twi', 'TWI14G0729' => 'twi', 'TWI18G0596' => 'twi', 'TWI39G0780' => 'twi', 'TWI39G0850' => 'twi', 'TWI73G1052' => 'twi', 'unitig_52.g17485' => 'ugi', 'unitig_61.g26355' => 'ugi', 'vmacro01040' => 'vma', 'vmacro16731' => 'vma', 'vmacro18270' => 'vma', 'vmacro19142' => 'vma', 'vmacro19407' => 'vma', 'vmacro19408' => 'vma', 'vmacro21899' => 'vma', 'vmacro21900' => 'vma', 'vmacro21901' => 'vma', 'VMungo0251G0490' => 'vmu', 'VMungo0251G1748' => 'vmu', 'VMungo1309G0421' => 'vmu', 'Zm00001eb086500' => 'zma', 'Zm00001eb150680' => 'zma', 'Zm00001eb162330' => 'zma', 'Zm00001eb203130' => 'zma', 'Zm00001eb369480' => 'zma', 'Zm00001eb382340' => 'zma', 'Zm00001eb416360' => 'zma' ) $gf_id = 'HOM05D000902' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000902' ) $data_identifier = 'HOM05D000902' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 13, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 10, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 6, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 9, 'hma' => (int) 12, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 4, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 6, 'ppa' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 6, 'rch' => (int) 9, 'rsi' => (int) 9, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 12, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 3, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416360' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000902', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '663', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02470' => 'bna', 'A01p16260' => 'bna', 'A02p01680' => 'bna', 'A03p16600' => 'bna', 'A03p55660' => 'bna', 'A03p64160' => 'bna', 'A03p64170' => 'bna', 'A08p31900' => 'bna', 'A09p59530' => 'bna', 'A10p08230' => 'bna', 'A10p25090' => 'bna', 'Aa31LG3G7100' => 'aar', 'Aa31LG3G7110' => 'aar', 'Aa31LG6G13160' => 'aar', 'Aa31LG7G10770' => 'aar', 'Aa31LG7G3830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2723' => 'aag', 'Actinidia08045' => 'ach', 'Actinidia08888' => 'ach', 'Actinidia18333' => 'ach', 'Actinidia19334' => 'ach', 'Actinidia25552' => 'ach', 'Actinidia26089' => 'ach', 'Actinidia30615' => 'ach', 'Actinidia30616' => 'ach', 'Actinidia33083' => 'ach', 'Actinidia35762' => 'ach', 'Ah.02g110620' => 'amhyb', 'Ah.11g046390' => 'amhyb', 'AL1G31670' => 'aly', 'AL6G23730' => 'aly', 'AL7G14740' => 'aly', 'AL7G14750' => 'aly', 'AL7G14760' => 'aly', 'AL7G28220' => 'aly', 'AL8G24940' => 'aly', 'Aqoxy3G01665' => 'aox', 'Aqoxy3G02853' => 'aox', 'Aqoxy5G01513' => 'aox', 'Aqoxy5G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8SKA4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ75LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKDA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0LJZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7REX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZP4YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWX7I5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2QKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS0L9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPCD8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q161UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC7XCF' => 'arhy', 'AT1G19100' => 'ath', 'AT4G24970' => 'ath', 'AT4G36270' => 'ath', 'AT4G36280' => 'ath', 'AT4G36290' => 'ath', 'AT5G13130' => 'ath', 'AT5G50780' => 'ath', 'ATR0582G266' => 'atr', 'ATR0661G195' => 'atr', 'ATR1152G031' => 'atr', 'Atru.chr11.2382' => 'acertr', 'Atru.chr12.2337' => 'acertr', 'Atru.chr3.744' => 'acertr', 'Atru.chr6.1870' => 'acertr', 'Atru.chr9.2515' => 'acertr', 'AUR62004120' => 'cqu', 'AUR62005667' => 'cqu', 'AUR62007634' => 'cqu', 'AUR62008186' => 'cqu', 'AUR62008187' => 'cqu', 'AUR62008188' => 'cqu', 'AUR62027954' => 'cqu', 'AUR62028766' => 'cqu', 'AUR62028767' => 'cqu', 'AUR62028768' => 'cqu', 'AUR62028886' => 'cqu', 'AUR62029563' => 'cqu', 'AUR62038832' => 'cqu', 'BcaB01g04149' => 'bca', 'BcaB03g12940' => 'bca', 'BcaB03g13090' => 'bca', 'BcaB03g14466' => 'bca', 'BcaB05g24035' => 'bca', 'BcaC01g06050' => 'bca', 'BcaC04g19148' => 'bca', 'BcaC04g20761' => 'bca', 'BcaC06g32845' => 'bca', 'BcaC07g41274' => 'bca', 'BcaC09g50827' => 'bca', 'BcaNung00741' => 'bca', 'BcaNung00742' => 'bca', 'BcaNung01859' => 'bca', 'BcaNung03985' => 'bca', 'BcaNung03989' => 'bca', 'BcaNung05661' => 'bca', 'BolC1t00257H' => 'bol', 'BolC1t01956H' => 'bol', 'BolC2t06534H' => 'bol', 'BolC3t14334H' => 'bol', 'BolC5t30451H' => 'bol', 'BolC7t45880H' => 'bol', 'BolC7t46586H' => 'bol', 'BolC8t49301H' => 'bol', 'BolC8t51837H' => 'bol', 'BolC9t56822H' => 'bol', 'BolC9t59235H' => 'bol', 'BraA01t00234Z' => 'bra', 'BraA01t01563Z' => 'bra', 'BraA02t05147Z' => 'bra', 'BraA03t10947Z' => 'bra', 'BraA03t14633Z' => 'bra', 'BraA08t35112Z' => 'bra', 'BraA09t41330Z' => 'bra', 'BraA10t44570Z' => 'bra', 'C01p02670' => 'bna', 'C01p20260' => 'bna', 'C02p05890' => 'bna', 'C03p19530' => 'bna', 'C05p17470' => 'bna', 'C07p53900' => 'bna', 'C07p61630' => 'bna', 'C08p16800' => 'bna', 'C08p42810' => 'bna', 'C09p39480' => 'bna', 'C09p63980' => 'bna', 'CAN.G1001.7' => 'can', 'CAN.G1034.55' => 'can', 'CAN.G143.7' => 'can', 'CAN.G3340.1' => 'can', 'CAN.G358.19' => 'can', 'CAN.G373.2' => 'can', 'CAN.G674.16' => 'can', 'CAN.G674.17' => 'can', 'CAN.G674.18' => 'can', 'CAN.G732.2' => 'can', 'CAN.G732.3' => 'can', 'CAN.G993.39' => 'can', 'CANSAT01G2052' => 'cansat', 'CANSAT80G0070' => 'cansat', 'CANSAT80G0483' => 'cansat', 'CANSAT80G0625' => 'cansat', 'CARHR019690' => 'chi', 'CARHR080280' => 'chi', 'CARHR152750' => 'chi', 'CARHR152760' => 'chi', 'CARHR152770' => 'chi', 'CARHR200340' => 'chi', 'CARHR232370' => 'chi', 'CARHR244670' => 'chi', 'CARHR244680' => 'chi', 'CARHR257520' => 'chi', 'Carub.0001s1872' => 'cru', 'Carub.0006s1130' => 'cru', 'Carub.0007s0396' => 'cru', 'Carub.0007s0397' => 'cru', 'Carub.0007s1608' => 'cru', 'Carub.0008s1068' => 'cru', 'Carub.0008s1077' => 'cru', 'Ca_16158_v3' => 'car', 'Ca_17571_v3' => 'car', 'Ca_21936_v3' => 'car', 'Ca_22350_v3' => 'car', 'CBR_g22445' => 'cbr', 'CBR_g26290' => 'cbr', 'Cc04_g09610' => 'ccan', 'Cc04_g12280' => 'ccan', 'Cc07_g10230' => 'ccan', 'CDE02G0093' => 'cde', 'CDE02G0701' => 'cde', 'CDE04G1050' => 'cde', 'CDE05G1833' => 'cde', 'CDE05G3058' => 'cde', 'CDE05G3380' => 'cde', 'CDE06G0536' => 'cde', 'Cfa006923' => 'cfa', 'Cfa009402' => 'cfa', 'Cfa018751' => 'cfa', 'Cfa019164' => 'cfa', 'Cfa022935' => 'cfa', 'Ciclev10019081m.g' => 'ccl', 'Ciclev10025076m.g' => 'ccl', 'Ciclev10030712m.g' => 'ccl', 'Ciclev10033760m.g' => 'ccl', 'CiPaw.05G105600' => 'cil', 'CiPaw.08G136700' => 'cil', 'CiPaw.11G003900' => 'cil', 'CiPaw.11G023700' => 'cil', 'CiPaw.12G003700' => 'cil', 'ClCG06G017100' => 'cla', 'ClCG06G018110' => 'cla', 'ClCG07G008800' => 'cla', 'ClCG07G015330' => 'cla', 'COL.COLO4_13698' => 'col', 'COL.COLO4_16659' => 'col', 'COL.COLO4_21986' => 'col', 'COL.COLO4_24049' => 'col', 'COL.COLO4_29061' => 'col', 'COL.COLO4_29075' => 'col', 'COL.COLO4_30094' => 'col', 'Cpa.g.c33689' => 'cpa', 'Cpa.g.sc108.39' => 'cpa', 'Cpa.g.sc108.41' => 'cpa', 'Cpa.g.sc1163.1' => 'cpa', 'Cpa.g.sc4.155' => 'cpa', 'Cpa.g.sc6.194' => 'cpa', 'CsaV3_1G000340' => 'csa', 'CsaV3_1G001400' => 'csa', 'CsaV3_4G002220' => 'csa', 'CsaV3_4G005370' => 'csa', 'CSS0007487' => 'camsi', 'CSS0008066' => 'camsi', 'CSS0009120' => 'camsi', 'CSS0015512' => 'camsi', 'CSS0022409' => 'camsi', 'CSS0025358' => 'camsi', 'CSS0044547' => 'camsi', 'DCAR_013057' => 'dca', 'DCAR_015058' => 'dca', 'DCAR_016027' => 'dca', 'DCAR_017327' => 'dca', 'DCAR_020743' => 'dca', 'DCAR_026157' => 'dca', 'DCAR_032339' => 'dca', 'DCAR_032340' => 'dca', 'Dinv11200' => 'din', 'Dinv11201' => 'din', 'Dinv20631' => 'din', 'Dinv23182' => 'din', 'Dinv33466' => 'din', 'Dinv33583' => 'din', 'Dinv38565' => 'din', 'Duzib068G0200' => 'dzi', 'Duzib147G0132' => 'dzi', 'Duzib147G0635' => 'dzi', 'Duzib205G1670' => 'dzi', 'Duzib251G0606' => 'dzi', 'ECA232G3336' => 'eca', 'ECA232G3763' => 'eca', 'ECA232G4845' => 'eca', 'ECA234G1607' => 'eca', 'ECA246G0932' => 'eca', 'ECA247G0781' => 'eca', 'ECA247G1932' => 'eca', 'ECA247G2079' => 'eca', 'ECA247G3338' => 'eca', 'ECA247G4115' => 'eca', 'EL10Ac3g06552' => 'bvu', 'EL10Ac5g10721' => 'bvu', 'EL10Ac5g10722' => 'bvu', 'EL10Ac5g10723' => 'bvu', 'EL10Ac5g11361' => 'bvu', 'EL10Ac6g13553' => 'bvu', 'EL10As8g23872' => 'bvu', 'Eucgr.B00250' => 'egr', 'Eucgr.B00251' => 'egr', 'Eucgr.B03533' => 'egr', 'Eucgr.I02381' => 'egr', 'Eucgr.K02700' => 'egr', 'FAN02G0174' => 'fan', 'FAN02G3146' => 'fan', 'FAN04G1672' => 'fan', 'FAN04G2273' => 'fan', 'FAN05G2791' => 'fan', 'FAN05G4035' => 'fan', 'FAN07G0834' => 'fan', 'FAN08G1198' => 'fan', 'FAN09G4182' => 'fan', 'FAN12G0496' => 'fan', 'FAN13G1027' => 'fan', 'FAN13G2951' => 'fan', 'FAN14G0705' => 'fan', 'FAN14G0720' => 'fan', 'FAN17G0201' => 'fan', 'FAN17G2665' => 'fan', 'FAN18G1456' => 'fan', 'FAN18G1525' => 'fan', 'FAN18G3500' => 'fan', 'FAN28G2670' => 'fan', 'FvH4_1g12391' => 'fve', 'FvH4_4g23220' => 'fve', 'FvH4_5g08810' => 'fve', 'FvH4_5g28960' => 'fve', 'FvH4_6g42820' => 'fve', 'FvH4_6g51110' => 'fve', 'Glyma.02G051802' => 'gma', 'Glyma.04G185300' => 'gma', 'Glyma.05G202900' => 'gma', 'Glyma.08G010300' => 'gma', 'Glyma.16G131900' => 'gma', 'Glyma.17G087900' => 'gma', 'Gohir.A07G048600' => 'ghi', 'Gohir.A11G179000' => 'ghi', 'Gohir.A12G140900' => 'ghi', 'Gohir.A12G140950' => 'ghi', 'Gohir.A12G191700' => 'ghi', 'Gohir.A13G086300' => 'ghi', 'Gohir.D07G052900' => 'ghi', 'Gohir.D11G186600' => 'ghi', 'Gohir.D12G145575' => 'ghi', 'Gohir.D12G145650' => 'ghi', 'Gohir.D12G145725' => 'ghi', 'Gohir.D12G194050' => 'ghi', 'Gohir.D13G091800' => 'ghi', 'Gorai.001G055900' => 'gra', 'Gorai.007G198400' => 'gra', 'Gorai.008G157000' => 'gra', 'Gorai.008G157100' => 'gra', 'Gorai.008G208700' => 'gra', 'Gorai.010G138700' => 'gra', 'GSVIVG01000977001' => 'vvi', 'GSVIVG01007708001' => 'vvi', 'GSVIVG01008587001' => 'vvi', 'GSVIVG01018849001' => 'vvi', 'GSVIVG01032432001' => 'vvi', 'HanXRQChr02g0034131' => 'han', 'HanXRQChr02g0035981' => 'han', 'HanXRQChr02g0035991' => 'han', 'HanXRQChr05g0155611' => 'han', 'HanXRQChr05g0155621' => 'han', 'HanXRQChr08g0236501' => 'han', 'HanXRQChr09g0261321' => 'han', 'HanXRQChr09g0272081' => 'han', 'HanXRQChr10g0310741' => 'han', 'HanXRQChr11g0325591' => 'han', 'HanXRQChr12g0385691' => 'han', 'HanXRQChr13g0387801' => 'han', 'HanXRQChr15g0463011' => 'han', 'Haze_03826' => 'cav', 'Haze_03827' => 'cav', 'Haze_07183' => 'cav', 'Haze_07537' => 'cav', 'Haze_07539' => 'cav', 'Haze_12461' => 'cav', 'Haze_16115' => 'cav', 'Haze_16808' => 'cav', 'Haze_18531' => 'cav', 'Hma1.2p1_0046F.1_g026700' => 'hma', 'Hma1.2p1_0046F.1_g026710' => 'hma', 'Hma1.2p1_0168F.1_g074340' => 'hma', 'Hma1.2p1_0266F.1_g107030' => 'hma', 'Hma1.2p1_0266F.1_g107060' => 'hma', 'Hma1.2p1_0275F.1_g110510' => 'hma', 'Hma1.2p1_0592F.1_g185490' => 'hma', 'Hma1.2p1_0592F.1_g185500' => 'hma', 'Hma1.2p1_0592F.1_g185510' => 'hma', 'Hma1.2p1_0592F.1_g185520' => 'hma', 'Hma1.2p1_0592F.1_g185530' => 'hma', 'Hma1.2p1_0818F.1_g223450' => 'hma', 'HPP92_009708' => 'vpl', 'HPP92_009793' => 'vpl', 'HPP92_009796' => 'vpl', 'HPP92_009797' => 'vpl', 'HPP92_014940' => 'vpl', 'HPP92_014988' => 'vpl', 'Hund02463' => 'sun', 'Hund02760' => 'sun', 'Hund05071' => 'sun', 'Hund10108' => 'sun', 'Hund11204' => 'sun', 'Hund14016' => 'sun', 'Hund16464' => 'sun', 'Lalb_Chr09g0333391' => 'lal', 'Lalb_Chr11g0070461' => 'lal', 'Lalb_Chr12g0201671' => 'lal', 'Lalb_Chr13g0297161' => 'lal', 'Lj1g0002823' => 'lja', 'Lj3C1074T6' => 'lonja', 'Lj4A212T28' => 'lonja', 'Lj4g0005516' => 'lja', 'Lj4g0013705' => 'lja', 'Lj4g0027865' => 'lja', 'Lj5C92G16' => 'lonja', 'Lj5C92T12' => 'lonja', 'Lj7C596T3' => 'lonja', 'Lj9A446G59' => 'lonja', 'Lj9A482G21' => 'lonja', 'Lsat_1_v5_gn_1_28261' => 'lsa', 'Lsat_1_v5_gn_1_28281' => 'lsa', 'Lsat_1_v5_gn_1_32721' => 'lsa', 'Lsat_1_v5_gn_4_151760' => 'lsa', 'Lsat_1_v5_gn_4_2120' => 'lsa', 'Lsat_1_v5_gn_4_75761' => 'lsa', 'Lsat_1_v5_gn_5_10920' => 'lsa', 'Manes.02G099900' => 'mes', 'Manes.11G096200' => 'mes', 'Manes.12G007200' => 'mes', 'Manes.14G048300' => 'mes', 'Manes.17G114700' => 'mes', 'Mapoly0002s0070' => 'mpo', 'Mapoly0029s0099' => 'mpo', 'MBI07_g24742_MAGBIO' => 'mbi', 'MBI10_g27988_MAGBIO' => 'mbi', 'MBI11_g13057_MAGBIO' => 'mbi', 'MD02G1137200' => 'mdo', 'MD06G1137200' => 'mdo', 'MD07G1122300' => 'mdo', 'MD09G1078200' => 'mdo', 'MD13G1123700' => 'mdo', 'MD14G1151900' => 'mdo', 'MD17G1030900' => 'mdo', 'MD17G1068200' => 'mdo', 'MD17G1068600' => 'mdo', 'Medtr3g077540' => 'mtr', 'Medtr4g105530' => 'mtr', 'Medtr8g076580' => 'mtr', 'Medtr8g076590' => 'mtr', 'Medtr8g096410' => 'mtr', 'MELO3C016411.2' => 'cme', 'MELO3C017780.2' => 'cme', 'MELO3C022560.2' => 'cme', 'MELO3C026187.2' => 'cme', 'MELO3C026286.2' => 'cme', 'MELO3C032854.2' => 'cme', 'Migut.H02495' => 'egut', 'Migut.I00561' => 'egut', 'Migut.K01015' => 'egut', 'Migut.K01016' => 'egut', 'Migut.L00743' => 'egut', 'Migut.L00744' => 'egut', 'Migut.L00746' => 'egut', 'Migut.L00798' => 'egut', 'Migut.L00799' => 'egut', 'Migut.N02096' => 'egut', 'MSTRG.11259' => 'ama', 'MSTRG.23142' => 'ama', 'MSTRG.2499' => 'ama', 'Nitab4.5_0000003g0730' => 'nta', 'Nitab4.5_0000137g0020' => 'nta', 'Nitab4.5_0000721g0210' => 'nta', 'Nitab4.5_0000723g0050' => 'nta', 'Nitab4.5_0000913g0070' => 'nta', 'Nitab4.5_0001332g0040' => 'nta', 'Nitab4.5_0001771g0050' => 'nta', 'Nitab4.5_0001918g0050' => 'nta', 'Nitab4.5_0002686g0030' => 'nta', 'Nitab4.5_0003156g0020' => 'nta', 'Nitab4.5_0003383g0040' => 'nta', 'Nitab4.5_0003918g0010' => 'nta', 'Nitab4.5_0006760g0010' => 'nta', 'Nn1g05981' => 'nnu', 'Nn1g06288' => 'nnu', 'Nn3g16371' => 'nnu', 'Nn3g16786' => 'nnu', 'Nn4g22232' => 'nnu', 'Oeu005144.1' => 'oeu', 'Oeu005145.1' => 'oeu', 'Oeu011348.1' => 'oeu', 'Oeu016415.1' => 'oeu', 'Oeu023501.1' => 'oeu', 'Oeu044473.1' => 'oeu', 'Oeu048892.2' => 'oeu', 'Os01g0549200' => 'osa', 'Os02g0469300' => 'osa', 'Os04g0311100' => 'osa', 'Os06g0474900' => 'osa', 'Os10g0181700' => 'osa', 'Os11g0454800' => 'osa', 'Peaxi162Scf00037g00714' => 'pax', 'Peaxi162Scf00084g01217' => 'pax', 'Peaxi162Scf00257g00217' => 'pax', 'Peaxi162Scf00516g00215' => 'pax', 'Peaxi162Scf00689g00123' => 'pax', 'PGR044G2719' => 'pgr', 'PGR083G1360' => 'pgr', 'PGR102G2849' => 'pgr', 'PGR119G2534' => 'pgr', 'PGSC0003DMG400003538' => 'stu', 'PGSC0003DMG400028138' => 'stu', 'PGSC0003DMG400031732' => 'stu', 'PGSC0003DMG400038165' => 'stu', 'Phvul.002G284600' => 'pvu', 'Phvul.003G258200' => 'pvu', 'Phvul.009G176500' => 'pvu', 'Potri.003G167201' => 'ptr', 'Potri.005G118400' => 'ptr', 'Potri.012G089000' => 'ptr', 'Potri.012G102800' => 'ptr', 'Potri.015G079400' => 'ptr', 'Potri.015G100900' => 'ptr', 'Pp3c14_9810' => 'ppa', 'Pp3c15_10450' => 'ppa', 'Pp3c20_19150' => 'ppa', 'Pp3c23_12740' => 'ppa', 'Pp3c23_6310' => 'ppa', 'Pp3c24_3720' => 'ppa', 'Pp3c27_2580' => 'ppa', 'Pp3c9_8990' => 'ppa', 'PRCOL_00002854' => 'pco', 'Prupe.1G221200' => 'ppe', 'Prupe.3G289000' => 'ppe', 'Prupe.5G147000' => 'ppe', 'Prupe.6G157300' => 'ppe', 'Prupe.7G163400' => 'ppe', 'Psat0s2177g0040' => 'psa', 'Psat3g174760' => 'psa', 'Psat3g192160' => 'psa', 'Psat4g058520' => 'psa', 'Psat4g096840' => 'psa', 'Psat7g037320' => 'psa', 'PSO017G1274' => 'pso', 'PSO017G5166' => 'pso', 'PSO063G4558' => 'pso', 'PSO170G4458' => 'pso', 'PSO170G5005' => 'pso', 'PSO210G6156' => 'pso', 'PSO210G6635' => 'pso', 'PSO210G7397' => 'pso', 'PSO210G7700' => 'pso', 'PSO455G0035' => 'pso', 'PSO455G0180' => 'pso', 'PSO478G4515' => 'pso', 'PSO832G1305' => 'pso', 'PSO832G3489' => 'pso', 'QL02p075247' => 'qlo', 'QL03p051148' => 'qlo', 'QL05p010313' => 'qlo', 'QL06p034627' => 'qlo', 'QL10p001889' => 'qlo', 'QL10p010846' => 'qlo', 'RcHm_v2.0_Chr1g0350621' => 'rch', 'RcHm_v2.0_Chr1g0350641' => 'rch', 'RcHm_v2.0_Chr2g0092891' => 'rch', 'RcHm_v2.0_Chr2g0100251' => 'rch', 'RcHm_v2.0_Chr2g0158661' => 'rch', 'RcHm_v2.0_Chr2g0172741' => 'rch', 'RcHm_v2.0_Chr4g0429571' => 'rch', 'RcHm_v2.0_Chr5g0042471' => 'rch', 'RcHm_v2.0_Chr7g0189451' => 'rch', 'Rhsim08G0052000' => 'rsi', 'Rhsim08G0174400' => 'rsi', 'Rhsim08G0193200' => 'rsi', 'Rhsim10G0214800' => 'rsi', 'Rhsim10G0214900' => 'rsi', 'Rhsim10G0215000' => 'rsi', 'Rhsim12G0022900' => 'rsi', 'Rhsim12G0177500' => 'rsi', 'Rhsim12G0177700' => 'rsi', 'Sabra03G0122600' => 'sbr', 'Sabra05G0097400' => 'sbr', 'Sabra12G0064100' => 'sbr', 'Sabra15G0121300' => 'sbr', 'SalBow2G0642' => 'sbo', 'SalBow5G2667' => 'sbo', 'SalBow5G4873' => 'sbo', 'SalBow8G2395' => 'sbo', 'Sc03g0003290' => 'sci', 'Sc10g0010130' => 'sci', 'Sc22g0003650' => 'sci', 'Sed0001603' => 'sed', 'Sed0004259' => 'sed', 'Sed0006789' => 'sed', 'Sed0011838' => 'sed', 'Sed0012964' => 'sed', 'Sed0016383' => 'sed', 'Sed0019010' => 'sed', 'Sed0020188' => 'sed', 'SEGI_04702' => 'sgi', 'SEGI_17231' => 'sgi', 'SEGI_18877' => 'sgi', 'SEGI_25196' => 'sgi', 'SEGI_25515' => 'sgi', 'SEGI_28445' => 'sgi', 'SEGI_37452' => 'sgi', 'SGA_v2.0_scaffold188G40336' => 'sas', 'SGA_v2.0_scaffold228G43247' => 'sas', 'SGA_v2.0_scaffold280G46853' => 'sas', 'SGA_v2.0_scaffold34G13808' => 'sas', 'SGA_v2.0_scaffold40G15576' => 'sas', 'SGA_v2.0_scaffold611G53188' => 'sas', 'SGA_v2.0_scaffold78G25461' => 'sas', 'SGA_v2.0_scaffold90G27888' => 'sas', 'SHI08601' => 'shi', 'SHI08606' => 'shi', 'SHI17117' => 'shi', 'SHI17119' => 'shi', 'SMO118G0201' => 'smo', 'SMO169G0247' => 'smo', 'SMO176G0006' => 'smo', 'SMO176G0015' => 'smo', 'SMO202G0006' => 'smo', 'SMO240G0050' => 'smo', 'SMO286G0009' => 'smo', 'SMO338G0033' => 'smo', 'SMO356G0533' => 'smo', 'SMO364G0382' => 'smo', 'SMO367G0166' => 'smo', 'SMO367G1098' => 'smo', 'Solyc01g009920.3' => 'sly', 'Solyc01g099300.3' => 'sly', 'Solyc02g084700.3' => 'sly', 'Solyc03g097520.3' => 'sly', 'Solyc06g071580.3' => 'sly', 'Solyc10g081760.3' => 'sly', 'Sopen01g005480' => 'spe', 'Sopen01g042850' => 'spe', 'Sopen02g029370' => 'spe', 'Sopen03g028280' => 'spe', 'Sopen06g027870' => 'spe', 'Sopen10g032270' => 'spe', 'Sp5g18180' => 'spa', 'Sp6g12880' => 'spa', 'Sp6g30850' => 'spa', 'Sp7g22960' => 'spa', 'Sp7g34010' => 'spa', 'SpUn1326_0010' => 'spa', 'TAR371G0242' => 'tar', 'TAR622G0638' => 'tar', 'TAR628G1548' => 'tar', 'TAR629G1079' => 'tar', 'TAR629G3413' => 'tar', 'THA.LOC104804249' => 'tha', 'THA.LOC104808315' => 'tha', 'THA.LOC104809238' => 'tha', 'THA.LOC104825484' => 'tha', 'Thecc.01G025500' => 'tca', 'Thecc.03G015800' => 'tca', 'Thecc.03G018000' => 'tca', 'Thecc.03G134800' => 'tca', 'Thecc.04G014700' => 'tca', 'Thhalv10006991m.g' => 'esa', 'Thhalv10012707m.g' => 'esa', 'Thhalv10015739m.g' => 'esa', 'Thhalv10024553m.g' => 'esa', 'Thhalv10024673m.g' => 'esa', 'Thhalv10029187m.g' => 'esa', 'TPR.G12971' => 'tpr', 'TPR.G29396' => 'tpr', 'TPR.G33376' => 'tpr', 'TPR.G35508' => 'tpr', 'TPR.G35516' => 'tpr', 'TPR.G37317' => 'tpr', 'TPR.G37389' => 'tpr', 'TPR.G37523' => 'tpr', 'TPR.G559' => 'tpr', 'TWI14G0070' => 'twi', 'TWI14G0729' => 'twi', 'TWI18G0596' => 'twi', 'TWI39G0780' => 'twi', 'TWI39G0850' => 'twi', 'TWI73G1052' => 'twi', 'unitig_52.g17485' => 'ugi', 'unitig_61.g26355' => 'ugi', 'vmacro01040' => 'vma', 'vmacro16731' => 'vma', 'vmacro18270' => 'vma', 'vmacro19142' => 'vma', 'vmacro19407' => 'vma', 'vmacro19408' => 'vma', 'vmacro21899' => 'vma', 'vmacro21900' => 'vma', 'vmacro21901' => 'vma', 'VMungo0251G0490' => 'vmu', 'VMungo0251G1748' => 'vmu', 'VMungo1309G0421' => 'vmu', 'Zm00001eb086500' => 'zma', 'Zm00001eb150680' => 'zma', 'Zm00001eb162330' => 'zma', 'Zm00001eb203130' => 'zma', 'Zm00001eb369480' => 'zma', 'Zm00001eb382340' => 'zma', 'Zm00001eb416360' => 'zma' ), 'gf_id' => 'HOM05D000902', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000902' ), 'data_identifier' => 'HOM05D000902', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000902', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '663', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02470' => 'bna', 'A01p16260' => 'bna', 'A02p01680' => 'bna', 'A03p16600' => 'bna', 'A03p55660' => 'bna', 'A03p64160' => 'bna', 'A03p64170' => 'bna', 'A08p31900' => 'bna', 'A09p59530' => 'bna', 'A10p08230' => 'bna', 'A10p25090' => 'bna', 'Aa31LG3G7100' => 'aar', 'Aa31LG3G7110' => 'aar', 'Aa31LG6G13160' => 'aar', 'Aa31LG7G10770' => 'aar', 'Aa31LG7G3830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2723' => 'aag', 'Actinidia08045' => 'ach', 'Actinidia08888' => 'ach', 'Actinidia18333' => 'ach', 'Actinidia19334' => 'ach', 'Actinidia25552' => 'ach', 'Actinidia26089' => 'ach', 'Actinidia30615' => 'ach', 'Actinidia30616' => 'ach', 'Actinidia33083' => 'ach', 'Actinidia35762' => 'ach', 'Ah.02g110620' => 'amhyb', 'Ah.11g046390' => 'amhyb', 'AL1G31670' => 'aly', 'AL6G23730' => 'aly', 'AL7G14740' => 'aly', 'AL7G14750' => 'aly', 'AL7G14760' => 'aly', 'AL7G28220' => 'aly', 'AL8G24940' => 'aly', 'Aqoxy3G01665' => 'aox', 'Aqoxy3G02853' => 'aox', 'Aqoxy5G01513' => 'aox', 'Aqoxy5G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8SKA4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ75LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKDA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0LJZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7REX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZP4YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWX7I5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2QKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS0L9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPCD8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q161UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC7XCF' => 'arhy', 'AT1G19100' => 'ath', 'AT4G24970' => 'ath', 'AT4G36270' => 'ath', 'AT4G36280' => 'ath', 'AT4G36290' => 'ath', 'AT5G13130' => 'ath', 'AT5G50780' => 'ath', 'ATR0582G266' => 'atr', 'ATR0661G195' => 'atr', 'ATR1152G031' => 'atr', 'Atru.chr11.2382' => 'acertr', 'Atru.chr12.2337' => 'acertr', 'Atru.chr3.744' => 'acertr', 'Atru.chr6.1870' => 'acertr', 'Atru.chr9.2515' => 'acertr', 'AUR62004120' => 'cqu', 'AUR62005667' => 'cqu', 'AUR62007634' => 'cqu', 'AUR62008186' => 'cqu', 'AUR62008187' => 'cqu', 'AUR62008188' => 'cqu', 'AUR62027954' => 'cqu', 'AUR62028766' => 'cqu', 'AUR62028767' => 'cqu', 'AUR62028768' => 'cqu', 'AUR62028886' => 'cqu', 'AUR62029563' => 'cqu', 'AUR62038832' => 'cqu', 'BcaB01g04149' => 'bca', 'BcaB03g12940' => 'bca', 'BcaB03g13090' => 'bca', 'BcaB03g14466' => 'bca', 'BcaB05g24035' => 'bca', 'BcaC01g06050' => 'bca', 'BcaC04g19148' => 'bca', 'BcaC04g20761' => 'bca', 'BcaC06g32845' => 'bca', 'BcaC07g41274' => 'bca', 'BcaC09g50827' => 'bca', 'BcaNung00741' => 'bca', 'BcaNung00742' => 'bca', 'BcaNung01859' => 'bca', 'BcaNung03985' => 'bca', 'BcaNung03989' => 'bca', 'BcaNung05661' => 'bca', 'BolC1t00257H' => 'bol', 'BolC1t01956H' => 'bol', 'BolC2t06534H' => 'bol', 'BolC3t14334H' => 'bol', 'BolC5t30451H' => 'bol', 'BolC7t45880H' => 'bol', 'BolC7t46586H' => 'bol', 'BolC8t49301H' => 'bol', 'BolC8t51837H' => 'bol', 'BolC9t56822H' => 'bol', 'BolC9t59235H' => 'bol', 'BraA01t00234Z' => 'bra', 'BraA01t01563Z' => 'bra', 'BraA02t05147Z' => 'bra', 'BraA03t10947Z' => 'bra', 'BraA03t14633Z' => 'bra', 'BraA08t35112Z' => 'bra', 'BraA09t41330Z' => 'bra', 'BraA10t44570Z' => 'bra', 'C01p02670' => 'bna', 'C01p20260' => 'bna', 'C02p05890' => 'bna', 'C03p19530' => 'bna', 'C05p17470' => 'bna', 'C07p53900' => 'bna', 'C07p61630' => 'bna', 'C08p16800' => 'bna', 'C08p42810' => 'bna', 'C09p39480' => 'bna', 'C09p63980' => 'bna', 'CAN.G1001.7' => 'can', 'CAN.G1034.55' => 'can', 'CAN.G143.7' => 'can', 'CAN.G3340.1' => 'can', 'CAN.G358.19' => 'can', 'CAN.G373.2' => 'can', 'CAN.G674.16' => 'can', 'CAN.G674.17' => 'can', 'CAN.G674.18' => 'can', 'CAN.G732.2' => 'can', 'CAN.G732.3' => 'can', 'CAN.G993.39' => 'can', 'CANSAT01G2052' => 'cansat', 'CANSAT80G0070' => 'cansat', 'CANSAT80G0483' => 'cansat', 'CANSAT80G0625' => 'cansat', 'CARHR019690' => 'chi', 'CARHR080280' => 'chi', 'CARHR152750' => 'chi', 'CARHR152760' => 'chi', 'CARHR152770' => 'chi', 'CARHR200340' => 'chi', 'CARHR232370' => 'chi', 'CARHR244670' => 'chi', 'CARHR244680' => 'chi', 'CARHR257520' => 'chi', 'Carub.0001s1872' => 'cru', 'Carub.0006s1130' => 'cru', 'Carub.0007s0396' => 'cru', 'Carub.0007s0397' => 'cru', 'Carub.0007s1608' => 'cru', 'Carub.0008s1068' => 'cru', 'Carub.0008s1077' => 'cru', 'Ca_16158_v3' => 'car', 'Ca_17571_v3' => 'car', 'Ca_21936_v3' => 'car', 'Ca_22350_v3' => 'car', 'CBR_g22445' => 'cbr', 'CBR_g26290' => 'cbr', 'Cc04_g09610' => 'ccan', 'Cc04_g12280' => 'ccan', 'Cc07_g10230' => 'ccan', 'CDE02G0093' => 'cde', 'CDE02G0701' => 'cde', 'CDE04G1050' => 'cde', 'CDE05G1833' => 'cde', 'CDE05G3058' => 'cde', 'CDE05G3380' => 'cde', 'CDE06G0536' => 'cde', 'Cfa006923' => 'cfa', 'Cfa009402' => 'cfa', 'Cfa018751' => 'cfa', 'Cfa019164' => 'cfa', 'Cfa022935' => 'cfa', 'Ciclev10019081m.g' => 'ccl', 'Ciclev10025076m.g' => 'ccl', 'Ciclev10030712m.g' => 'ccl', 'Ciclev10033760m.g' => 'ccl', 'CiPaw.05G105600' => 'cil', 'CiPaw.08G136700' => 'cil', 'CiPaw.11G003900' => 'cil', 'CiPaw.11G023700' => 'cil', 'CiPaw.12G003700' => 'cil', 'ClCG06G017100' => 'cla', 'ClCG06G018110' => 'cla', 'ClCG07G008800' => 'cla', 'ClCG07G015330' => 'cla', 'COL.COLO4_13698' => 'col', 'COL.COLO4_16659' => 'col', 'COL.COLO4_21986' => 'col', 'COL.COLO4_24049' => 'col', 'COL.COLO4_29061' => 'col', 'COL.COLO4_29075' => 'col', 'COL.COLO4_30094' => 'col', 'Cpa.g.c33689' => 'cpa', 'Cpa.g.sc108.39' => 'cpa', 'Cpa.g.sc108.41' => 'cpa', 'Cpa.g.sc1163.1' => 'cpa', 'Cpa.g.sc4.155' => 'cpa', 'Cpa.g.sc6.194' => 'cpa', 'CsaV3_1G000340' => 'csa', 'CsaV3_1G001400' => 'csa', 'CsaV3_4G002220' => 'csa', 'CsaV3_4G005370' => 'csa', 'CSS0007487' => 'camsi', 'CSS0008066' => 'camsi', 'CSS0009120' => 'camsi', 'CSS0015512' => 'camsi', 'CSS0022409' => 'camsi', 'CSS0025358' => 'camsi', 'CSS0044547' => 'camsi', 'DCAR_013057' => 'dca', 'DCAR_015058' => 'dca', 'DCAR_016027' => 'dca', 'DCAR_017327' => 'dca', 'DCAR_020743' => 'dca', 'DCAR_026157' => 'dca', 'DCAR_032339' => 'dca', 'DCAR_032340' => 'dca', 'Dinv11200' => 'din', 'Dinv11201' => 'din', 'Dinv20631' => 'din', 'Dinv23182' => 'din', 'Dinv33466' => 'din', 'Dinv33583' => 'din', 'Dinv38565' => 'din', 'Duzib068G0200' => 'dzi', 'Duzib147G0132' => 'dzi', 'Duzib147G0635' => 'dzi', 'Duzib205G1670' => 'dzi', 'Duzib251G0606' => 'dzi', 'ECA232G3336' => 'eca', 'ECA232G3763' => 'eca', 'ECA232G4845' => 'eca', 'ECA234G1607' => 'eca', 'ECA246G0932' => 'eca', 'ECA247G0781' => 'eca', 'ECA247G1932' => 'eca', 'ECA247G2079' => 'eca', 'ECA247G3338' => 'eca', 'ECA247G4115' => 'eca', 'EL10Ac3g06552' => 'bvu', 'EL10Ac5g10721' => 'bvu', 'EL10Ac5g10722' => 'bvu', 'EL10Ac5g10723' => 'bvu', 'EL10Ac5g11361' => 'bvu', 'EL10Ac6g13553' => 'bvu', 'EL10As8g23872' => 'bvu', 'Eucgr.B00250' => 'egr', 'Eucgr.B00251' => 'egr', 'Eucgr.B03533' => 'egr', 'Eucgr.I02381' => 'egr', 'Eucgr.K02700' => 'egr', 'FAN02G0174' => 'fan', 'FAN02G3146' => 'fan', 'FAN04G1672' => 'fan', 'FAN04G2273' => 'fan', 'FAN05G2791' => 'fan', 'FAN05G4035' => 'fan', 'FAN07G0834' => 'fan', 'FAN08G1198' => 'fan', 'FAN09G4182' => 'fan', 'FAN12G0496' => 'fan', 'FAN13G1027' => 'fan', 'FAN13G2951' => 'fan', 'FAN14G0705' => 'fan', 'FAN14G0720' => 'fan', 'FAN17G0201' => 'fan', 'FAN17G2665' => 'fan', 'FAN18G1456' => 'fan', 'FAN18G1525' => 'fan', 'FAN18G3500' => 'fan', 'FAN28G2670' => 'fan', 'FvH4_1g12391' => 'fve', 'FvH4_4g23220' => 'fve', 'FvH4_5g08810' => 'fve', 'FvH4_5g28960' => 'fve', 'FvH4_6g42820' => 'fve', 'FvH4_6g51110' => 'fve', 'Glyma.02G051802' => 'gma', 'Glyma.04G185300' => 'gma', 'Glyma.05G202900' => 'gma', 'Glyma.08G010300' => 'gma', 'Glyma.16G131900' => 'gma', 'Glyma.17G087900' => 'gma', 'Gohir.A07G048600' => 'ghi', 'Gohir.A11G179000' => 'ghi', 'Gohir.A12G140900' => 'ghi', 'Gohir.A12G140950' => 'ghi', 'Gohir.A12G191700' => 'ghi', 'Gohir.A13G086300' => 'ghi', 'Gohir.D07G052900' => 'ghi', 'Gohir.D11G186600' => 'ghi', 'Gohir.D12G145575' => 'ghi', 'Gohir.D12G145650' => 'ghi', 'Gohir.D12G145725' => 'ghi', 'Gohir.D12G194050' => 'ghi', 'Gohir.D13G091800' => 'ghi', 'Gorai.001G055900' => 'gra', 'Gorai.007G198400' => 'gra', 'Gorai.008G157000' => 'gra', 'Gorai.008G157100' => 'gra', 'Gorai.008G208700' => 'gra', 'Gorai.010G138700' => 'gra', 'GSVIVG01000977001' => 'vvi', 'GSVIVG01007708001' => 'vvi', 'GSVIVG01008587001' => 'vvi', 'GSVIVG01018849001' => 'vvi', 'GSVIVG01032432001' => 'vvi', 'HanXRQChr02g0034131' => 'han', 'HanXRQChr02g0035981' => 'han', 'HanXRQChr02g0035991' => 'han', 'HanXRQChr05g0155611' => 'han', 'HanXRQChr05g0155621' => 'han', 'HanXRQChr08g0236501' => 'han', 'HanXRQChr09g0261321' => 'han', 'HanXRQChr09g0272081' => 'han', 'HanXRQChr10g0310741' => 'han', 'HanXRQChr11g0325591' => 'han', 'HanXRQChr12g0385691' => 'han', 'HanXRQChr13g0387801' => 'han', 'HanXRQChr15g0463011' => 'han', 'Haze_03826' => 'cav', 'Haze_03827' => 'cav', 'Haze_07183' => 'cav', 'Haze_07537' => 'cav', 'Haze_07539' => 'cav', 'Haze_12461' => 'cav', 'Haze_16115' => 'cav', 'Haze_16808' => 'cav', 'Haze_18531' => 'cav', 'Hma1.2p1_0046F.1_g026700' => 'hma', 'Hma1.2p1_0046F.1_g026710' => 'hma', 'Hma1.2p1_0168F.1_g074340' => 'hma', 'Hma1.2p1_0266F.1_g107030' => 'hma', 'Hma1.2p1_0266F.1_g107060' => 'hma', 'Hma1.2p1_0275F.1_g110510' => 'hma', 'Hma1.2p1_0592F.1_g185490' => 'hma', 'Hma1.2p1_0592F.1_g185500' => 'hma', 'Hma1.2p1_0592F.1_g185510' => 'hma', 'Hma1.2p1_0592F.1_g185520' => 'hma', 'Hma1.2p1_0592F.1_g185530' => 'hma', 'Hma1.2p1_0818F.1_g223450' => 'hma', 'HPP92_009708' => 'vpl', 'HPP92_009793' => 'vpl', 'HPP92_009796' => 'vpl', 'HPP92_009797' => 'vpl', 'HPP92_014940' => 'vpl', 'HPP92_014988' => 'vpl', 'Hund02463' => 'sun', 'Hund02760' => 'sun', 'Hund05071' => 'sun', 'Hund10108' => 'sun', 'Hund11204' => 'sun', 'Hund14016' => 'sun', 'Hund16464' => 'sun', 'Lalb_Chr09g0333391' => 'lal', 'Lalb_Chr11g0070461' => 'lal', 'Lalb_Chr12g0201671' => 'lal', 'Lalb_Chr13g0297161' => 'lal', 'Lj1g0002823' => 'lja', 'Lj3C1074T6' => 'lonja', 'Lj4A212T28' => 'lonja', 'Lj4g0005516' => 'lja', 'Lj4g0013705' => 'lja', 'Lj4g0027865' => 'lja', 'Lj5C92G16' => 'lonja', 'Lj5C92T12' => 'lonja', 'Lj7C596T3' => 'lonja', 'Lj9A446G59' => 'lonja', 'Lj9A482G21' => 'lonja', 'Lsat_1_v5_gn_1_28261' => 'lsa', 'Lsat_1_v5_gn_1_28281' => 'lsa', 'Lsat_1_v5_gn_1_32721' => 'lsa', 'Lsat_1_v5_gn_4_151760' => 'lsa', 'Lsat_1_v5_gn_4_2120' => 'lsa', 'Lsat_1_v5_gn_4_75761' => 'lsa', 'Lsat_1_v5_gn_5_10920' => 'lsa', 'Manes.02G099900' => 'mes', 'Manes.11G096200' => 'mes', 'Manes.12G007200' => 'mes', 'Manes.14G048300' => 'mes', 'Manes.17G114700' => 'mes', 'Mapoly0002s0070' => 'mpo', 'Mapoly0029s0099' => 'mpo', 'MBI07_g24742_MAGBIO' => 'mbi', 'MBI10_g27988_MAGBIO' => 'mbi', 'MBI11_g13057_MAGBIO' => 'mbi', 'MD02G1137200' => 'mdo', 'MD06G1137200' => 'mdo', 'MD07G1122300' => 'mdo', 'MD09G1078200' => 'mdo', 'MD13G1123700' => 'mdo', 'MD14G1151900' => 'mdo', 'MD17G1030900' => 'mdo', 'MD17G1068200' => 'mdo', 'MD17G1068600' => 'mdo', 'Medtr3g077540' => 'mtr', 'Medtr4g105530' => 'mtr', 'Medtr8g076580' => 'mtr', 'Medtr8g076590' => 'mtr', 'Medtr8g096410' => 'mtr', 'MELO3C016411.2' => 'cme', 'MELO3C017780.2' => 'cme', 'MELO3C022560.2' => 'cme', 'MELO3C026187.2' => 'cme', 'MELO3C026286.2' => 'cme', 'MELO3C032854.2' => 'cme', 'Migut.H02495' => 'egut', 'Migut.I00561' => 'egut', 'Migut.K01015' => 'egut', 'Migut.K01016' => 'egut', 'Migut.L00743' => 'egut', 'Migut.L00744' => 'egut', 'Migut.L00746' => 'egut', 'Migut.L00798' => 'egut', 'Migut.L00799' => 'egut', 'Migut.N02096' => 'egut', 'MSTRG.11259' => 'ama', 'MSTRG.23142' => 'ama', 'MSTRG.2499' => 'ama', 'Nitab4.5_0000003g0730' => 'nta', 'Nitab4.5_0000137g0020' => 'nta', 'Nitab4.5_0000721g0210' => 'nta', 'Nitab4.5_0000723g0050' => 'nta', 'Nitab4.5_0000913g0070' => 'nta', 'Nitab4.5_0001332g0040' => 'nta', 'Nitab4.5_0001771g0050' => 'nta', 'Nitab4.5_0001918g0050' => 'nta', 'Nitab4.5_0002686g0030' => 'nta', 'Nitab4.5_0003156g0020' => 'nta', 'Nitab4.5_0003383g0040' => 'nta', 'Nitab4.5_0003918g0010' => 'nta', 'Nitab4.5_0006760g0010' => 'nta', 'Nn1g05981' => 'nnu', 'Nn1g06288' => 'nnu', 'Nn3g16371' => 'nnu', 'Nn3g16786' => 'nnu', 'Nn4g22232' => 'nnu', 'Oeu005144.1' => 'oeu', 'Oeu005145.1' => 'oeu', 'Oeu011348.1' => 'oeu', 'Oeu016415.1' => 'oeu', 'Oeu023501.1' => 'oeu', 'Oeu044473.1' => 'oeu', 'Oeu048892.2' => 'oeu', 'Os01g0549200' => 'osa', 'Os02g0469300' => 'osa', 'Os04g0311100' => 'osa', 'Os06g0474900' => 'osa', 'Os10g0181700' => 'osa', 'Os11g0454800' => 'osa', 'Peaxi162Scf00037g00714' => 'pax', 'Peaxi162Scf00084g01217' => 'pax', 'Peaxi162Scf00257g00217' => 'pax', 'Peaxi162Scf00516g00215' => 'pax', 'Peaxi162Scf00689g00123' => 'pax', 'PGR044G2719' => 'pgr', 'PGR083G1360' => 'pgr', 'PGR102G2849' => 'pgr', 'PGR119G2534' => 'pgr', 'PGSC0003DMG400003538' => 'stu', 'PGSC0003DMG400028138' => 'stu', 'PGSC0003DMG400031732' => 'stu', 'PGSC0003DMG400038165' => 'stu', 'Phvul.002G284600' => 'pvu', 'Phvul.003G258200' => 'pvu', 'Phvul.009G176500' => 'pvu', 'Potri.003G167201' => 'ptr', 'Potri.005G118400' => 'ptr', 'Potri.012G089000' => 'ptr', 'Potri.012G102800' => 'ptr', 'Potri.015G079400' => 'ptr', 'Potri.015G100900' => 'ptr', 'Pp3c14_9810' => 'ppa', 'Pp3c15_10450' => 'ppa', 'Pp3c20_19150' => 'ppa', 'Pp3c23_12740' => 'ppa', 'Pp3c23_6310' => 'ppa', 'Pp3c24_3720' => 'ppa', 'Pp3c27_2580' => 'ppa', 'Pp3c9_8990' => 'ppa', 'PRCOL_00002854' => 'pco', 'Prupe.1G221200' => 'ppe', 'Prupe.3G289000' => 'ppe', 'Prupe.5G147000' => 'ppe', 'Prupe.6G157300' => 'ppe', 'Prupe.7G163400' => 'ppe', 'Psat0s2177g0040' => 'psa', 'Psat3g174760' => 'psa', 'Psat3g192160' => 'psa', 'Psat4g058520' => 'psa', 'Psat4g096840' => 'psa', 'Psat7g037320' => 'psa', 'PSO017G1274' => 'pso', 'PSO017G5166' => 'pso', 'PSO063G4558' => 'pso', 'PSO170G4458' => 'pso', 'PSO170G5005' => 'pso', 'PSO210G6156' => 'pso', 'PSO210G6635' => 'pso', 'PSO210G7397' => 'pso', 'PSO210G7700' => 'pso', 'PSO455G0035' => 'pso', 'PSO455G0180' => 'pso', 'PSO478G4515' => 'pso', 'PSO832G1305' => 'pso', 'PSO832G3489' => 'pso', 'QL02p075247' => 'qlo', 'QL03p051148' => 'qlo', 'QL05p010313' => 'qlo', 'QL06p034627' => 'qlo', 'QL10p001889' => 'qlo', 'QL10p010846' => 'qlo', 'RcHm_v2.0_Chr1g0350621' => 'rch', 'RcHm_v2.0_Chr1g0350641' => 'rch', 'RcHm_v2.0_Chr2g0092891' => 'rch', 'RcHm_v2.0_Chr2g0100251' => 'rch', 'RcHm_v2.0_Chr2g0158661' => 'rch', 'RcHm_v2.0_Chr2g0172741' => 'rch', 'RcHm_v2.0_Chr4g0429571' => 'rch', 'RcHm_v2.0_Chr5g0042471' => 'rch', 'RcHm_v2.0_Chr7g0189451' => 'rch', 'Rhsim08G0052000' => 'rsi', 'Rhsim08G0174400' => 'rsi', 'Rhsim08G0193200' => 'rsi', 'Rhsim10G0214800' => 'rsi', 'Rhsim10G0214900' => 'rsi', 'Rhsim10G0215000' => 'rsi', 'Rhsim12G0022900' => 'rsi', 'Rhsim12G0177500' => 'rsi', 'Rhsim12G0177700' => 'rsi', 'Sabra03G0122600' => 'sbr', 'Sabra05G0097400' => 'sbr', 'Sabra12G0064100' => 'sbr', 'Sabra15G0121300' => 'sbr', 'SalBow2G0642' => 'sbo', 'SalBow5G2667' => 'sbo', 'SalBow5G4873' => 'sbo', 'SalBow8G2395' => 'sbo', 'Sc03g0003290' => 'sci', 'Sc10g0010130' => 'sci', 'Sc22g0003650' => 'sci', 'Sed0001603' => 'sed', 'Sed0004259' => 'sed', 'Sed0006789' => 'sed', 'Sed0011838' => 'sed', 'Sed0012964' => 'sed', 'Sed0016383' => 'sed', 'Sed0019010' => 'sed', 'Sed0020188' => 'sed', 'SEGI_04702' => 'sgi', 'SEGI_17231' => 'sgi', 'SEGI_18877' => 'sgi', 'SEGI_25196' => 'sgi', 'SEGI_25515' => 'sgi', 'SEGI_28445' => 'sgi', 'SEGI_37452' => 'sgi', 'SGA_v2.0_scaffold188G40336' => 'sas', 'SGA_v2.0_scaffold228G43247' => 'sas', 'SGA_v2.0_scaffold280G46853' => 'sas', 'SGA_v2.0_scaffold34G13808' => 'sas', 'SGA_v2.0_scaffold40G15576' => 'sas', 'SGA_v2.0_scaffold611G53188' => 'sas', 'SGA_v2.0_scaffold78G25461' => 'sas', 'SGA_v2.0_scaffold90G27888' => 'sas', 'SHI08601' => 'shi', 'SHI08606' => 'shi', 'SHI17117' => 'shi', 'SHI17119' => 'shi', 'SMO118G0201' => 'smo', 'SMO169G0247' => 'smo', 'SMO176G0006' => 'smo', 'SMO176G0015' => 'smo', 'SMO202G0006' => 'smo', 'SMO240G0050' => 'smo', 'SMO286G0009' => 'smo', 'SMO338G0033' => 'smo', 'SMO356G0533' => 'smo', 'SMO364G0382' => 'smo', 'SMO367G0166' => 'smo', 'SMO367G1098' => 'smo', 'Solyc01g009920.3' => 'sly', 'Solyc01g099300.3' => 'sly', 'Solyc02g084700.3' => 'sly', 'Solyc03g097520.3' => 'sly', 'Solyc06g071580.3' => 'sly', 'Solyc10g081760.3' => 'sly', 'Sopen01g005480' => 'spe', 'Sopen01g042850' => 'spe', 'Sopen02g029370' => 'spe', 'Sopen03g028280' => 'spe', 'Sopen06g027870' => 'spe', 'Sopen10g032270' => 'spe', 'Sp5g18180' => 'spa', 'Sp6g12880' => 'spa', 'Sp6g30850' => 'spa', 'Sp7g22960' => 'spa', 'Sp7g34010' => 'spa', 'SpUn1326_0010' => 'spa', 'TAR371G0242' => 'tar', 'TAR622G0638' => 'tar', 'TAR628G1548' => 'tar', 'TAR629G1079' => 'tar', 'TAR629G3413' => 'tar', 'THA.LOC104804249' => 'tha', 'THA.LOC104808315' => 'tha', 'THA.LOC104809238' => 'tha', 'THA.LOC104825484' => 'tha', 'Thecc.01G025500' => 'tca', 'Thecc.03G015800' => 'tca', 'Thecc.03G018000' => 'tca', 'Thecc.03G134800' => 'tca', 'Thecc.04G014700' => 'tca', 'Thhalv10006991m.g' => 'esa', 'Thhalv10012707m.g' => 'esa', 'Thhalv10015739m.g' => 'esa', 'Thhalv10024553m.g' => 'esa', 'Thhalv10024673m.g' => 'esa', 'Thhalv10029187m.g' => 'esa', 'TPR.G12971' => 'tpr', 'TPR.G29396' => 'tpr', 'TPR.G33376' => 'tpr', 'TPR.G35508' => 'tpr', 'TPR.G35516' => 'tpr', 'TPR.G37317' => 'tpr', 'TPR.G37389' => 'tpr', 'TPR.G37523' => 'tpr', 'TPR.G559' => 'tpr', 'TWI14G0070' => 'twi', 'TWI14G0729' => 'twi', 'TWI18G0596' => 'twi', 'TWI39G0780' => 'twi', 'TWI39G0850' => 'twi', 'TWI73G1052' => 'twi', 'unitig_52.g17485' => 'ugi', 'unitig_61.g26355' => 'ugi', 'vmacro01040' => 'vma', 'vmacro16731' => 'vma', 'vmacro18270' => 'vma', 'vmacro19142' => 'vma', 'vmacro19407' => 'vma', 'vmacro19408' => 'vma', 'vmacro21899' => 'vma', 'vmacro21900' => 'vma', 'vmacro21901' => 'vma', 'VMungo0251G0490' => 'vmu', 'VMungo0251G1748' => 'vmu', 'VMungo1309G0421' => 'vmu', 'Zm00001eb086500' => 'zma', 'Zm00001eb150680' => 'zma', 'Zm00001eb162330' => 'zma', 'Zm00001eb203130' => 'zma', 'Zm00001eb369480' => 'zma', 'Zm00001eb382340' => 'zma', 'Zm00001eb416360' => 'zma' ) $gf_id = 'HOM05D000902' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000902' ) $data_identifier = 'HOM05D000902' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 13, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 10, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 6, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 9, 'hma' => (int) 12, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 4, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 6, 'ppa' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 6, 'rch' => (int) 9, 'rsi' => (int) 9, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 12, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 3, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416360' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000902', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '663', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02470' => 'bna', 'A01p16260' => 'bna', 'A02p01680' => 'bna', 'A03p16600' => 'bna', 'A03p55660' => 'bna', 'A03p64160' => 'bna', 'A03p64170' => 'bna', 'A08p31900' => 'bna', 'A09p59530' => 'bna', 'A10p08230' => 'bna', 'A10p25090' => 'bna', 'Aa31LG3G7100' => 'aar', 'Aa31LG3G7110' => 'aar', 'Aa31LG6G13160' => 'aar', 'Aa31LG7G10770' => 'aar', 'Aa31LG7G3830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2723' => 'aag', 'Actinidia08045' => 'ach', 'Actinidia08888' => 'ach', 'Actinidia18333' => 'ach', 'Actinidia19334' => 'ach', 'Actinidia25552' => 'ach', 'Actinidia26089' => 'ach', 'Actinidia30615' => 'ach', 'Actinidia30616' => 'ach', 'Actinidia33083' => 'ach', 'Actinidia35762' => 'ach', 'Ah.02g110620' => 'amhyb', 'Ah.11g046390' => 'amhyb', 'AL1G31670' => 'aly', 'AL6G23730' => 'aly', 'AL7G14740' => 'aly', 'AL7G14750' => 'aly', 'AL7G14760' => 'aly', 'AL7G28220' => 'aly', 'AL8G24940' => 'aly', 'Aqoxy3G01665' => 'aox', 'Aqoxy3G02853' => 'aox', 'Aqoxy5G01513' => 'aox', 'Aqoxy5G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8SKA4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ75LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKDA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0LJZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7REX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZP4YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWX7I5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2QKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS0L9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPCD8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q161UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC7XCF' => 'arhy', 'AT1G19100' => 'ath', 'AT4G24970' => 'ath', 'AT4G36270' => 'ath', 'AT4G36280' => 'ath', 'AT4G36290' => 'ath', 'AT5G13130' => 'ath', 'AT5G50780' => 'ath', 'ATR0582G266' => 'atr', 'ATR0661G195' => 'atr', 'ATR1152G031' => 'atr', 'Atru.chr11.2382' => 'acertr', 'Atru.chr12.2337' => 'acertr', 'Atru.chr3.744' => 'acertr', 'Atru.chr6.1870' => 'acertr', 'Atru.chr9.2515' => 'acertr', 'AUR62004120' => 'cqu', 'AUR62005667' => 'cqu', 'AUR62007634' => 'cqu', 'AUR62008186' => 'cqu', 'AUR62008187' => 'cqu', 'AUR62008188' => 'cqu', 'AUR62027954' => 'cqu', 'AUR62028766' => 'cqu', 'AUR62028767' => 'cqu', 'AUR62028768' => 'cqu', 'AUR62028886' => 'cqu', 'AUR62029563' => 'cqu', 'AUR62038832' => 'cqu', 'BcaB01g04149' => 'bca', 'BcaB03g12940' => 'bca', 'BcaB03g13090' => 'bca', 'BcaB03g14466' => 'bca', 'BcaB05g24035' => 'bca', 'BcaC01g06050' => 'bca', 'BcaC04g19148' => 'bca', 'BcaC04g20761' => 'bca', 'BcaC06g32845' => 'bca', 'BcaC07g41274' => 'bca', 'BcaC09g50827' => 'bca', 'BcaNung00741' => 'bca', 'BcaNung00742' => 'bca', 'BcaNung01859' => 'bca', 'BcaNung03985' => 'bca', 'BcaNung03989' => 'bca', 'BcaNung05661' => 'bca', 'BolC1t00257H' => 'bol', 'BolC1t01956H' => 'bol', 'BolC2t06534H' => 'bol', 'BolC3t14334H' => 'bol', 'BolC5t30451H' => 'bol', 'BolC7t45880H' => 'bol', 'BolC7t46586H' => 'bol', 'BolC8t49301H' => 'bol', 'BolC8t51837H' => 'bol', 'BolC9t56822H' => 'bol', 'BolC9t59235H' => 'bol', 'BraA01t00234Z' => 'bra', 'BraA01t01563Z' => 'bra', 'BraA02t05147Z' => 'bra', 'BraA03t10947Z' => 'bra', 'BraA03t14633Z' => 'bra', 'BraA08t35112Z' => 'bra', 'BraA09t41330Z' => 'bra', 'BraA10t44570Z' => 'bra', 'C01p02670' => 'bna', 'C01p20260' => 'bna', 'C02p05890' => 'bna', 'C03p19530' => 'bna', 'C05p17470' => 'bna', 'C07p53900' => 'bna', 'C07p61630' => 'bna', 'C08p16800' => 'bna', 'C08p42810' => 'bna', 'C09p39480' => 'bna', 'C09p63980' => 'bna', 'CAN.G1001.7' => 'can', 'CAN.G1034.55' => 'can', 'CAN.G143.7' => 'can', 'CAN.G3340.1' => 'can', 'CAN.G358.19' => 'can', 'CAN.G373.2' => 'can', 'CAN.G674.16' => 'can', 'CAN.G674.17' => 'can', 'CAN.G674.18' => 'can', 'CAN.G732.2' => 'can', 'CAN.G732.3' => 'can', 'CAN.G993.39' => 'can', 'CANSAT01G2052' => 'cansat', 'CANSAT80G0070' => 'cansat', 'CANSAT80G0483' => 'cansat', 'CANSAT80G0625' => 'cansat', 'CARHR019690' => 'chi', 'CARHR080280' => 'chi', 'CARHR152750' => 'chi', 'CARHR152760' => 'chi', 'CARHR152770' => 'chi', 'CARHR200340' => 'chi', 'CARHR232370' => 'chi', 'CARHR244670' => 'chi', 'CARHR244680' => 'chi', 'CARHR257520' => 'chi', 'Carub.0001s1872' => 'cru', 'Carub.0006s1130' => 'cru', 'Carub.0007s0396' => 'cru', 'Carub.0007s0397' => 'cru', 'Carub.0007s1608' => 'cru', 'Carub.0008s1068' => 'cru', 'Carub.0008s1077' => 'cru', 'Ca_16158_v3' => 'car', 'Ca_17571_v3' => 'car', 'Ca_21936_v3' => 'car', 'Ca_22350_v3' => 'car', 'CBR_g22445' => 'cbr', 'CBR_g26290' => 'cbr', 'Cc04_g09610' => 'ccan', 'Cc04_g12280' => 'ccan', 'Cc07_g10230' => 'ccan', 'CDE02G0093' => 'cde', 'CDE02G0701' => 'cde', 'CDE04G1050' => 'cde', 'CDE05G1833' => 'cde', 'CDE05G3058' => 'cde', 'CDE05G3380' => 'cde', 'CDE06G0536' => 'cde', 'Cfa006923' => 'cfa', 'Cfa009402' => 'cfa', 'Cfa018751' => 'cfa', 'Cfa019164' => 'cfa', 'Cfa022935' => 'cfa', 'Ciclev10019081m.g' => 'ccl', 'Ciclev10025076m.g' => 'ccl', 'Ciclev10030712m.g' => 'ccl', 'Ciclev10033760m.g' => 'ccl', 'CiPaw.05G105600' => 'cil', 'CiPaw.08G136700' => 'cil', 'CiPaw.11G003900' => 'cil', 'CiPaw.11G023700' => 'cil', 'CiPaw.12G003700' => 'cil', 'ClCG06G017100' => 'cla', 'ClCG06G018110' => 'cla', 'ClCG07G008800' => 'cla', 'ClCG07G015330' => 'cla', 'COL.COLO4_13698' => 'col', 'COL.COLO4_16659' => 'col', 'COL.COLO4_21986' => 'col', 'COL.COLO4_24049' => 'col', 'COL.COLO4_29061' => 'col', 'COL.COLO4_29075' => 'col', 'COL.COLO4_30094' => 'col', 'Cpa.g.c33689' => 'cpa', 'Cpa.g.sc108.39' => 'cpa', 'Cpa.g.sc108.41' => 'cpa', 'Cpa.g.sc1163.1' => 'cpa', 'Cpa.g.sc4.155' => 'cpa', 'Cpa.g.sc6.194' => 'cpa', 'CsaV3_1G000340' => 'csa', 'CsaV3_1G001400' => 'csa', 'CsaV3_4G002220' => 'csa', 'CsaV3_4G005370' => 'csa', 'CSS0007487' => 'camsi', 'CSS0008066' => 'camsi', 'CSS0009120' => 'camsi', 'CSS0015512' => 'camsi', 'CSS0022409' => 'camsi', 'CSS0025358' => 'camsi', 'CSS0044547' => 'camsi', 'DCAR_013057' => 'dca', 'DCAR_015058' => 'dca', 'DCAR_016027' => 'dca', 'DCAR_017327' => 'dca', 'DCAR_020743' => 'dca', 'DCAR_026157' => 'dca', 'DCAR_032339' => 'dca', 'DCAR_032340' => 'dca', 'Dinv11200' => 'din', 'Dinv11201' => 'din', 'Dinv20631' => 'din', 'Dinv23182' => 'din', 'Dinv33466' => 'din', 'Dinv33583' => 'din', 'Dinv38565' => 'din', 'Duzib068G0200' => 'dzi', 'Duzib147G0132' => 'dzi', 'Duzib147G0635' => 'dzi', 'Duzib205G1670' => 'dzi', 'Duzib251G0606' => 'dzi', 'ECA232G3336' => 'eca', 'ECA232G3763' => 'eca', 'ECA232G4845' => 'eca', 'ECA234G1607' => 'eca', 'ECA246G0932' => 'eca', 'ECA247G0781' => 'eca', 'ECA247G1932' => 'eca', 'ECA247G2079' => 'eca', 'ECA247G3338' => 'eca', 'ECA247G4115' => 'eca', 'EL10Ac3g06552' => 'bvu', 'EL10Ac5g10721' => 'bvu', 'EL10Ac5g10722' => 'bvu', 'EL10Ac5g10723' => 'bvu', 'EL10Ac5g11361' => 'bvu', 'EL10Ac6g13553' => 'bvu', 'EL10As8g23872' => 'bvu', 'Eucgr.B00250' => 'egr', 'Eucgr.B00251' => 'egr', 'Eucgr.B03533' => 'egr', 'Eucgr.I02381' => 'egr', 'Eucgr.K02700' => 'egr', 'FAN02G0174' => 'fan', 'FAN02G3146' => 'fan', 'FAN04G1672' => 'fan', 'FAN04G2273' => 'fan', 'FAN05G2791' => 'fan', 'FAN05G4035' => 'fan', 'FAN07G0834' => 'fan', 'FAN08G1198' => 'fan', 'FAN09G4182' => 'fan', 'FAN12G0496' => 'fan', 'FAN13G1027' => 'fan', 'FAN13G2951' => 'fan', 'FAN14G0705' => 'fan', 'FAN14G0720' => 'fan', 'FAN17G0201' => 'fan', 'FAN17G2665' => 'fan', 'FAN18G1456' => 'fan', 'FAN18G1525' => 'fan', 'FAN18G3500' => 'fan', 'FAN28G2670' => 'fan', 'FvH4_1g12391' => 'fve', 'FvH4_4g23220' => 'fve', 'FvH4_5g08810' => 'fve', 'FvH4_5g28960' => 'fve', 'FvH4_6g42820' => 'fve', 'FvH4_6g51110' => 'fve', 'Glyma.02G051802' => 'gma', 'Glyma.04G185300' => 'gma', 'Glyma.05G202900' => 'gma', 'Glyma.08G010300' => 'gma', 'Glyma.16G131900' => 'gma', 'Glyma.17G087900' => 'gma', 'Gohir.A07G048600' => 'ghi', 'Gohir.A11G179000' => 'ghi', 'Gohir.A12G140900' => 'ghi', 'Gohir.A12G140950' => 'ghi', 'Gohir.A12G191700' => 'ghi', 'Gohir.A13G086300' => 'ghi', 'Gohir.D07G052900' => 'ghi', 'Gohir.D11G186600' => 'ghi', 'Gohir.D12G145575' => 'ghi', 'Gohir.D12G145650' => 'ghi', 'Gohir.D12G145725' => 'ghi', 'Gohir.D12G194050' => 'ghi', 'Gohir.D13G091800' => 'ghi', 'Gorai.001G055900' => 'gra', 'Gorai.007G198400' => 'gra', 'Gorai.008G157000' => 'gra', 'Gorai.008G157100' => 'gra', 'Gorai.008G208700' => 'gra', 'Gorai.010G138700' => 'gra', 'GSVIVG01000977001' => 'vvi', 'GSVIVG01007708001' => 'vvi', 'GSVIVG01008587001' => 'vvi', 'GSVIVG01018849001' => 'vvi', 'GSVIVG01032432001' => 'vvi', 'HanXRQChr02g0034131' => 'han', 'HanXRQChr02g0035981' => 'han', 'HanXRQChr02g0035991' => 'han', 'HanXRQChr05g0155611' => 'han', 'HanXRQChr05g0155621' => 'han', 'HanXRQChr08g0236501' => 'han', 'HanXRQChr09g0261321' => 'han', 'HanXRQChr09g0272081' => 'han', 'HanXRQChr10g0310741' => 'han', 'HanXRQChr11g0325591' => 'han', 'HanXRQChr12g0385691' => 'han', 'HanXRQChr13g0387801' => 'han', 'HanXRQChr15g0463011' => 'han', 'Haze_03826' => 'cav', 'Haze_03827' => 'cav', 'Haze_07183' => 'cav', 'Haze_07537' => 'cav', 'Haze_07539' => 'cav', 'Haze_12461' => 'cav', 'Haze_16115' => 'cav', 'Haze_16808' => 'cav', 'Haze_18531' => 'cav', 'Hma1.2p1_0046F.1_g026700' => 'hma', 'Hma1.2p1_0046F.1_g026710' => 'hma', 'Hma1.2p1_0168F.1_g074340' => 'hma', 'Hma1.2p1_0266F.1_g107030' => 'hma', 'Hma1.2p1_0266F.1_g107060' => 'hma', 'Hma1.2p1_0275F.1_g110510' => 'hma', 'Hma1.2p1_0592F.1_g185490' => 'hma', 'Hma1.2p1_0592F.1_g185500' => 'hma', 'Hma1.2p1_0592F.1_g185510' => 'hma', 'Hma1.2p1_0592F.1_g185520' => 'hma', 'Hma1.2p1_0592F.1_g185530' => 'hma', 'Hma1.2p1_0818F.1_g223450' => 'hma', 'HPP92_009708' => 'vpl', 'HPP92_009793' => 'vpl', 'HPP92_009796' => 'vpl', 'HPP92_009797' => 'vpl', 'HPP92_014940' => 'vpl', 'HPP92_014988' => 'vpl', 'Hund02463' => 'sun', 'Hund02760' => 'sun', 'Hund05071' => 'sun', 'Hund10108' => 'sun', 'Hund11204' => 'sun', 'Hund14016' => 'sun', 'Hund16464' => 'sun', 'Lalb_Chr09g0333391' => 'lal', 'Lalb_Chr11g0070461' => 'lal', 'Lalb_Chr12g0201671' => 'lal', 'Lalb_Chr13g0297161' => 'lal', 'Lj1g0002823' => 'lja', 'Lj3C1074T6' => 'lonja', 'Lj4A212T28' => 'lonja', 'Lj4g0005516' => 'lja', 'Lj4g0013705' => 'lja', 'Lj4g0027865' => 'lja', 'Lj5C92G16' => 'lonja', 'Lj5C92T12' => 'lonja', 'Lj7C596T3' => 'lonja', 'Lj9A446G59' => 'lonja', 'Lj9A482G21' => 'lonja', 'Lsat_1_v5_gn_1_28261' => 'lsa', 'Lsat_1_v5_gn_1_28281' => 'lsa', 'Lsat_1_v5_gn_1_32721' => 'lsa', 'Lsat_1_v5_gn_4_151760' => 'lsa', 'Lsat_1_v5_gn_4_2120' => 'lsa', 'Lsat_1_v5_gn_4_75761' => 'lsa', 'Lsat_1_v5_gn_5_10920' => 'lsa', 'Manes.02G099900' => 'mes', 'Manes.11G096200' => 'mes', 'Manes.12G007200' => 'mes', 'Manes.14G048300' => 'mes', 'Manes.17G114700' => 'mes', 'Mapoly0002s0070' => 'mpo', 'Mapoly0029s0099' => 'mpo', 'MBI07_g24742_MAGBIO' => 'mbi', 'MBI10_g27988_MAGBIO' => 'mbi', 'MBI11_g13057_MAGBIO' => 'mbi', 'MD02G1137200' => 'mdo', 'MD06G1137200' => 'mdo', 'MD07G1122300' => 'mdo', 'MD09G1078200' => 'mdo', 'MD13G1123700' => 'mdo', 'MD14G1151900' => 'mdo', 'MD17G1030900' => 'mdo', 'MD17G1068200' => 'mdo', 'MD17G1068600' => 'mdo', 'Medtr3g077540' => 'mtr', 'Medtr4g105530' => 'mtr', 'Medtr8g076580' => 'mtr', 'Medtr8g076590' => 'mtr', 'Medtr8g096410' => 'mtr', 'MELO3C016411.2' => 'cme', 'MELO3C017780.2' => 'cme', 'MELO3C022560.2' => 'cme', 'MELO3C026187.2' => 'cme', 'MELO3C026286.2' => 'cme', 'MELO3C032854.2' => 'cme', 'Migut.H02495' => 'egut', 'Migut.I00561' => 'egut', 'Migut.K01015' => 'egut', 'Migut.K01016' => 'egut', 'Migut.L00743' => 'egut', 'Migut.L00744' => 'egut', 'Migut.L00746' => 'egut', 'Migut.L00798' => 'egut', 'Migut.L00799' => 'egut', 'Migut.N02096' => 'egut', 'MSTRG.11259' => 'ama', 'MSTRG.23142' => 'ama', 'MSTRG.2499' => 'ama', 'Nitab4.5_0000003g0730' => 'nta', 'Nitab4.5_0000137g0020' => 'nta', 'Nitab4.5_0000721g0210' => 'nta', 'Nitab4.5_0000723g0050' => 'nta', 'Nitab4.5_0000913g0070' => 'nta', 'Nitab4.5_0001332g0040' => 'nta', 'Nitab4.5_0001771g0050' => 'nta', 'Nitab4.5_0001918g0050' => 'nta', 'Nitab4.5_0002686g0030' => 'nta', 'Nitab4.5_0003156g0020' => 'nta', 'Nitab4.5_0003383g0040' => 'nta', 'Nitab4.5_0003918g0010' => 'nta', 'Nitab4.5_0006760g0010' => 'nta', 'Nn1g05981' => 'nnu', 'Nn1g06288' => 'nnu', 'Nn3g16371' => 'nnu', 'Nn3g16786' => 'nnu', 'Nn4g22232' => 'nnu', 'Oeu005144.1' => 'oeu', 'Oeu005145.1' => 'oeu', 'Oeu011348.1' => 'oeu', 'Oeu016415.1' => 'oeu', 'Oeu023501.1' => 'oeu', 'Oeu044473.1' => 'oeu', 'Oeu048892.2' => 'oeu', 'Os01g0549200' => 'osa', 'Os02g0469300' => 'osa', 'Os04g0311100' => 'osa', 'Os06g0474900' => 'osa', 'Os10g0181700' => 'osa', 'Os11g0454800' => 'osa', 'Peaxi162Scf00037g00714' => 'pax', 'Peaxi162Scf00084g01217' => 'pax', 'Peaxi162Scf00257g00217' => 'pax', 'Peaxi162Scf00516g00215' => 'pax', 'Peaxi162Scf00689g00123' => 'pax', 'PGR044G2719' => 'pgr', 'PGR083G1360' => 'pgr', 'PGR102G2849' => 'pgr', 'PGR119G2534' => 'pgr', 'PGSC0003DMG400003538' => 'stu', 'PGSC0003DMG400028138' => 'stu', 'PGSC0003DMG400031732' => 'stu', 'PGSC0003DMG400038165' => 'stu', 'Phvul.002G284600' => 'pvu', 'Phvul.003G258200' => 'pvu', 'Phvul.009G176500' => 'pvu', 'Potri.003G167201' => 'ptr', 'Potri.005G118400' => 'ptr', 'Potri.012G089000' => 'ptr', 'Potri.012G102800' => 'ptr', 'Potri.015G079400' => 'ptr', 'Potri.015G100900' => 'ptr', 'Pp3c14_9810' => 'ppa', 'Pp3c15_10450' => 'ppa', 'Pp3c20_19150' => 'ppa', 'Pp3c23_12740' => 'ppa', 'Pp3c23_6310' => 'ppa', 'Pp3c24_3720' => 'ppa', 'Pp3c27_2580' => 'ppa', 'Pp3c9_8990' => 'ppa', 'PRCOL_00002854' => 'pco', 'Prupe.1G221200' => 'ppe', 'Prupe.3G289000' => 'ppe', 'Prupe.5G147000' => 'ppe', 'Prupe.6G157300' => 'ppe', 'Prupe.7G163400' => 'ppe', 'Psat0s2177g0040' => 'psa', 'Psat3g174760' => 'psa', 'Psat3g192160' => 'psa', 'Psat4g058520' => 'psa', 'Psat4g096840' => 'psa', 'Psat7g037320' => 'psa', 'PSO017G1274' => 'pso', 'PSO017G5166' => 'pso', 'PSO063G4558' => 'pso', 'PSO170G4458' => 'pso', 'PSO170G5005' => 'pso', 'PSO210G6156' => 'pso', 'PSO210G6635' => 'pso', 'PSO210G7397' => 'pso', 'PSO210G7700' => 'pso', 'PSO455G0035' => 'pso', 'PSO455G0180' => 'pso', 'PSO478G4515' => 'pso', 'PSO832G1305' => 'pso', 'PSO832G3489' => 'pso', 'QL02p075247' => 'qlo', 'QL03p051148' => 'qlo', 'QL05p010313' => 'qlo', 'QL06p034627' => 'qlo', 'QL10p001889' => 'qlo', 'QL10p010846' => 'qlo', 'RcHm_v2.0_Chr1g0350621' => 'rch', 'RcHm_v2.0_Chr1g0350641' => 'rch', 'RcHm_v2.0_Chr2g0092891' => 'rch', 'RcHm_v2.0_Chr2g0100251' => 'rch', 'RcHm_v2.0_Chr2g0158661' => 'rch', 'RcHm_v2.0_Chr2g0172741' => 'rch', 'RcHm_v2.0_Chr4g0429571' => 'rch', 'RcHm_v2.0_Chr5g0042471' => 'rch', 'RcHm_v2.0_Chr7g0189451' => 'rch', 'Rhsim08G0052000' => 'rsi', 'Rhsim08G0174400' => 'rsi', 'Rhsim08G0193200' => 'rsi', 'Rhsim10G0214800' => 'rsi', 'Rhsim10G0214900' => 'rsi', 'Rhsim10G0215000' => 'rsi', 'Rhsim12G0022900' => 'rsi', 'Rhsim12G0177500' => 'rsi', 'Rhsim12G0177700' => 'rsi', 'Sabra03G0122600' => 'sbr', 'Sabra05G0097400' => 'sbr', 'Sabra12G0064100' => 'sbr', 'Sabra15G0121300' => 'sbr', 'SalBow2G0642' => 'sbo', 'SalBow5G2667' => 'sbo', 'SalBow5G4873' => 'sbo', 'SalBow8G2395' => 'sbo', 'Sc03g0003290' => 'sci', 'Sc10g0010130' => 'sci', 'Sc22g0003650' => 'sci', 'Sed0001603' => 'sed', 'Sed0004259' => 'sed', 'Sed0006789' => 'sed', 'Sed0011838' => 'sed', 'Sed0012964' => 'sed', 'Sed0016383' => 'sed', 'Sed0019010' => 'sed', 'Sed0020188' => 'sed', 'SEGI_04702' => 'sgi', 'SEGI_17231' => 'sgi', 'SEGI_18877' => 'sgi', 'SEGI_25196' => 'sgi', 'SEGI_25515' => 'sgi', 'SEGI_28445' => 'sgi', 'SEGI_37452' => 'sgi', 'SGA_v2.0_scaffold188G40336' => 'sas', 'SGA_v2.0_scaffold228G43247' => 'sas', 'SGA_v2.0_scaffold280G46853' => 'sas', 'SGA_v2.0_scaffold34G13808' => 'sas', 'SGA_v2.0_scaffold40G15576' => 'sas', 'SGA_v2.0_scaffold611G53188' => 'sas', 'SGA_v2.0_scaffold78G25461' => 'sas', 'SGA_v2.0_scaffold90G27888' => 'sas', 'SHI08601' => 'shi', 'SHI08606' => 'shi', 'SHI17117' => 'shi', 'SHI17119' => 'shi', 'SMO118G0201' => 'smo', 'SMO169G0247' => 'smo', 'SMO176G0006' => 'smo', 'SMO176G0015' => 'smo', 'SMO202G0006' => 'smo', 'SMO240G0050' => 'smo', 'SMO286G0009' => 'smo', 'SMO338G0033' => 'smo', 'SMO356G0533' => 'smo', 'SMO364G0382' => 'smo', 'SMO367G0166' => 'smo', 'SMO367G1098' => 'smo', 'Solyc01g009920.3' => 'sly', 'Solyc01g099300.3' => 'sly', 'Solyc02g084700.3' => 'sly', 'Solyc03g097520.3' => 'sly', 'Solyc06g071580.3' => 'sly', 'Solyc10g081760.3' => 'sly', 'Sopen01g005480' => 'spe', 'Sopen01g042850' => 'spe', 'Sopen02g029370' => 'spe', 'Sopen03g028280' => 'spe', 'Sopen06g027870' => 'spe', 'Sopen10g032270' => 'spe', 'Sp5g18180' => 'spa', 'Sp6g12880' => 'spa', 'Sp6g30850' => 'spa', 'Sp7g22960' => 'spa', 'Sp7g34010' => 'spa', 'SpUn1326_0010' => 'spa', 'TAR371G0242' => 'tar', 'TAR622G0638' => 'tar', 'TAR628G1548' => 'tar', 'TAR629G1079' => 'tar', 'TAR629G3413' => 'tar', 'THA.LOC104804249' => 'tha', 'THA.LOC104808315' => 'tha', 'THA.LOC104809238' => 'tha', 'THA.LOC104825484' => 'tha', 'Thecc.01G025500' => 'tca', 'Thecc.03G015800' => 'tca', 'Thecc.03G018000' => 'tca', 'Thecc.03G134800' => 'tca', 'Thecc.04G014700' => 'tca', 'Thhalv10006991m.g' => 'esa', 'Thhalv10012707m.g' => 'esa', 'Thhalv10015739m.g' => 'esa', 'Thhalv10024553m.g' => 'esa', 'Thhalv10024673m.g' => 'esa', 'Thhalv10029187m.g' => 'esa', 'TPR.G12971' => 'tpr', 'TPR.G29396' => 'tpr', 'TPR.G33376' => 'tpr', 'TPR.G35508' => 'tpr', 'TPR.G35516' => 'tpr', 'TPR.G37317' => 'tpr', 'TPR.G37389' => 'tpr', 'TPR.G37523' => 'tpr', 'TPR.G559' => 'tpr', 'TWI14G0070' => 'twi', 'TWI14G0729' => 'twi', 'TWI18G0596' => 'twi', 'TWI39G0780' => 'twi', 'TWI39G0850' => 'twi', 'TWI73G1052' => 'twi', 'unitig_52.g17485' => 'ugi', 'unitig_61.g26355' => 'ugi', 'vmacro01040' => 'vma', 'vmacro16731' => 'vma', 'vmacro18270' => 'vma', 'vmacro19142' => 'vma', 'vmacro19407' => 'vma', 'vmacro19408' => 'vma', 'vmacro21899' => 'vma', 'vmacro21900' => 'vma', 'vmacro21901' => 'vma', 'VMungo0251G0490' => 'vmu', 'VMungo0251G1748' => 'vmu', 'VMungo1309G0421' => 'vmu', 'Zm00001eb086500' => 'zma', 'Zm00001eb150680' => 'zma', 'Zm00001eb162330' => 'zma', 'Zm00001eb203130' => 'zma', 'Zm00001eb369480' => 'zma', 'Zm00001eb382340' => 'zma', 'Zm00001eb416360' => 'zma' ), 'gf_id' => 'HOM05D000902', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000902' ), 'data_identifier' => 'HOM05D000902', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000902', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '663', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02470' => 'bna', 'A01p16260' => 'bna', 'A02p01680' => 'bna', 'A03p16600' => 'bna', 'A03p55660' => 'bna', 'A03p64160' => 'bna', 'A03p64170' => 'bna', 'A08p31900' => 'bna', 'A09p59530' => 'bna', 'A10p08230' => 'bna', 'A10p25090' => 'bna', 'Aa31LG3G7100' => 'aar', 'Aa31LG3G7110' => 'aar', 'Aa31LG6G13160' => 'aar', 'Aa31LG7G10770' => 'aar', 'Aa31LG7G3830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2723' => 'aag', 'Actinidia08045' => 'ach', 'Actinidia08888' => 'ach', 'Actinidia18333' => 'ach', 'Actinidia19334' => 'ach', 'Actinidia25552' => 'ach', 'Actinidia26089' => 'ach', 'Actinidia30615' => 'ach', 'Actinidia30616' => 'ach', 'Actinidia33083' => 'ach', 'Actinidia35762' => 'ach', 'Ah.02g110620' => 'amhyb', 'Ah.11g046390' => 'amhyb', 'AL1G31670' => 'aly', 'AL6G23730' => 'aly', 'AL7G14740' => 'aly', 'AL7G14750' => 'aly', 'AL7G14760' => 'aly', 'AL7G28220' => 'aly', 'AL8G24940' => 'aly', 'Aqoxy3G01665' => 'aox', 'Aqoxy3G02853' => 'aox', 'Aqoxy5G01513' => 'aox', 'Aqoxy5G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8SKA4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ75LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKDA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0LJZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7REX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZP4YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWX7I5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2QKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS0L9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPCD8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q161UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC7XCF' => 'arhy', 'AT1G19100' => 'ath', 'AT4G24970' => 'ath', 'AT4G36270' => 'ath', 'AT4G36280' => 'ath', 'AT4G36290' => 'ath', 'AT5G13130' => 'ath', 'AT5G50780' => 'ath', 'ATR0582G266' => 'atr', 'ATR0661G195' => 'atr', 'ATR1152G031' => 'atr', 'Atru.chr11.2382' => 'acertr', 'Atru.chr12.2337' => 'acertr', 'Atru.chr3.744' => 'acertr', 'Atru.chr6.1870' => 'acertr', 'Atru.chr9.2515' => 'acertr', 'AUR62004120' => 'cqu', 'AUR62005667' => 'cqu', 'AUR62007634' => 'cqu', 'AUR62008186' => 'cqu', 'AUR62008187' => 'cqu', 'AUR62008188' => 'cqu', 'AUR62027954' => 'cqu', 'AUR62028766' => 'cqu', 'AUR62028767' => 'cqu', 'AUR62028768' => 'cqu', 'AUR62028886' => 'cqu', 'AUR62029563' => 'cqu', 'AUR62038832' => 'cqu', 'BcaB01g04149' => 'bca', 'BcaB03g12940' => 'bca', 'BcaB03g13090' => 'bca', 'BcaB03g14466' => 'bca', 'BcaB05g24035' => 'bca', 'BcaC01g06050' => 'bca', 'BcaC04g19148' => 'bca', 'BcaC04g20761' => 'bca', 'BcaC06g32845' => 'bca', 'BcaC07g41274' => 'bca', 'BcaC09g50827' => 'bca', 'BcaNung00741' => 'bca', 'BcaNung00742' => 'bca', 'BcaNung01859' => 'bca', 'BcaNung03985' => 'bca', 'BcaNung03989' => 'bca', 'BcaNung05661' => 'bca', 'BolC1t00257H' => 'bol', 'BolC1t01956H' => 'bol', 'BolC2t06534H' => 'bol', 'BolC3t14334H' => 'bol', 'BolC5t30451H' => 'bol', 'BolC7t45880H' => 'bol', 'BolC7t46586H' => 'bol', 'BolC8t49301H' => 'bol', 'BolC8t51837H' => 'bol', 'BolC9t56822H' => 'bol', 'BolC9t59235H' => 'bol', 'BraA01t00234Z' => 'bra', 'BraA01t01563Z' => 'bra', 'BraA02t05147Z' => 'bra', 'BraA03t10947Z' => 'bra', 'BraA03t14633Z' => 'bra', 'BraA08t35112Z' => 'bra', 'BraA09t41330Z' => 'bra', 'BraA10t44570Z' => 'bra', 'C01p02670' => 'bna', 'C01p20260' => 'bna', 'C02p05890' => 'bna', 'C03p19530' => 'bna', 'C05p17470' => 'bna', 'C07p53900' => 'bna', 'C07p61630' => 'bna', 'C08p16800' => 'bna', 'C08p42810' => 'bna', 'C09p39480' => 'bna', 'C09p63980' => 'bna', 'CAN.G1001.7' => 'can', 'CAN.G1034.55' => 'can', 'CAN.G143.7' => 'can', 'CAN.G3340.1' => 'can', 'CAN.G358.19' => 'can', 'CAN.G373.2' => 'can', 'CAN.G674.16' => 'can', 'CAN.G674.17' => 'can', 'CAN.G674.18' => 'can', 'CAN.G732.2' => 'can', 'CAN.G732.3' => 'can', 'CAN.G993.39' => 'can', 'CANSAT01G2052' => 'cansat', 'CANSAT80G0070' => 'cansat', 'CANSAT80G0483' => 'cansat', 'CANSAT80G0625' => 'cansat', 'CARHR019690' => 'chi', 'CARHR080280' => 'chi', 'CARHR152750' => 'chi', 'CARHR152760' => 'chi', 'CARHR152770' => 'chi', 'CARHR200340' => 'chi', 'CARHR232370' => 'chi', 'CARHR244670' => 'chi', 'CARHR244680' => 'chi', 'CARHR257520' => 'chi', 'Carub.0001s1872' => 'cru', 'Carub.0006s1130' => 'cru', 'Carub.0007s0396' => 'cru', 'Carub.0007s0397' => 'cru', 'Carub.0007s1608' => 'cru', 'Carub.0008s1068' => 'cru', 'Carub.0008s1077' => 'cru', 'Ca_16158_v3' => 'car', 'Ca_17571_v3' => 'car', 'Ca_21936_v3' => 'car', 'Ca_22350_v3' => 'car', 'CBR_g22445' => 'cbr', 'CBR_g26290' => 'cbr', 'Cc04_g09610' => 'ccan', 'Cc04_g12280' => 'ccan', 'Cc07_g10230' => 'ccan', 'CDE02G0093' => 'cde', 'CDE02G0701' => 'cde', 'CDE04G1050' => 'cde', 'CDE05G1833' => 'cde', 'CDE05G3058' => 'cde', 'CDE05G3380' => 'cde', 'CDE06G0536' => 'cde', 'Cfa006923' => 'cfa', 'Cfa009402' => 'cfa', 'Cfa018751' => 'cfa', 'Cfa019164' => 'cfa', 'Cfa022935' => 'cfa', 'Ciclev10019081m.g' => 'ccl', 'Ciclev10025076m.g' => 'ccl', 'Ciclev10030712m.g' => 'ccl', 'Ciclev10033760m.g' => 'ccl', 'CiPaw.05G105600' => 'cil', 'CiPaw.08G136700' => 'cil', 'CiPaw.11G003900' => 'cil', 'CiPaw.11G023700' => 'cil', 'CiPaw.12G003700' => 'cil', 'ClCG06G017100' => 'cla', 'ClCG06G018110' => 'cla', 'ClCG07G008800' => 'cla', 'ClCG07G015330' => 'cla', 'COL.COLO4_13698' => 'col', 'COL.COLO4_16659' => 'col', 'COL.COLO4_21986' => 'col', 'COL.COLO4_24049' => 'col', 'COL.COLO4_29061' => 'col', 'COL.COLO4_29075' => 'col', 'COL.COLO4_30094' => 'col', 'Cpa.g.c33689' => 'cpa', 'Cpa.g.sc108.39' => 'cpa', 'Cpa.g.sc108.41' => 'cpa', 'Cpa.g.sc1163.1' => 'cpa', 'Cpa.g.sc4.155' => 'cpa', 'Cpa.g.sc6.194' => 'cpa', 'CsaV3_1G000340' => 'csa', 'CsaV3_1G001400' => 'csa', 'CsaV3_4G002220' => 'csa', 'CsaV3_4G005370' => 'csa', 'CSS0007487' => 'camsi', 'CSS0008066' => 'camsi', 'CSS0009120' => 'camsi', 'CSS0015512' => 'camsi', 'CSS0022409' => 'camsi', 'CSS0025358' => 'camsi', 'CSS0044547' => 'camsi', 'DCAR_013057' => 'dca', 'DCAR_015058' => 'dca', 'DCAR_016027' => 'dca', 'DCAR_017327' => 'dca', 'DCAR_020743' => 'dca', 'DCAR_026157' => 'dca', 'DCAR_032339' => 'dca', 'DCAR_032340' => 'dca', 'Dinv11200' => 'din', 'Dinv11201' => 'din', 'Dinv20631' => 'din', 'Dinv23182' => 'din', 'Dinv33466' => 'din', 'Dinv33583' => 'din', 'Dinv38565' => 'din', 'Duzib068G0200' => 'dzi', 'Duzib147G0132' => 'dzi', 'Duzib147G0635' => 'dzi', 'Duzib205G1670' => 'dzi', 'Duzib251G0606' => 'dzi', 'ECA232G3336' => 'eca', 'ECA232G3763' => 'eca', 'ECA232G4845' => 'eca', 'ECA234G1607' => 'eca', 'ECA246G0932' => 'eca', 'ECA247G0781' => 'eca', 'ECA247G1932' => 'eca', 'ECA247G2079' => 'eca', 'ECA247G3338' => 'eca', 'ECA247G4115' => 'eca', 'EL10Ac3g06552' => 'bvu', 'EL10Ac5g10721' => 'bvu', 'EL10Ac5g10722' => 'bvu', 'EL10Ac5g10723' => 'bvu', 'EL10Ac5g11361' => 'bvu', 'EL10Ac6g13553' => 'bvu', 'EL10As8g23872' => 'bvu', 'Eucgr.B00250' => 'egr', 'Eucgr.B00251' => 'egr', 'Eucgr.B03533' => 'egr', 'Eucgr.I02381' => 'egr', 'Eucgr.K02700' => 'egr', 'FAN02G0174' => 'fan', 'FAN02G3146' => 'fan', 'FAN04G1672' => 'fan', 'FAN04G2273' => 'fan', 'FAN05G2791' => 'fan', 'FAN05G4035' => 'fan', 'FAN07G0834' => 'fan', 'FAN08G1198' => 'fan', 'FAN09G4182' => 'fan', 'FAN12G0496' => 'fan', 'FAN13G1027' => 'fan', 'FAN13G2951' => 'fan', 'FAN14G0705' => 'fan', 'FAN14G0720' => 'fan', 'FAN17G0201' => 'fan', 'FAN17G2665' => 'fan', 'FAN18G1456' => 'fan', 'FAN18G1525' => 'fan', 'FAN18G3500' => 'fan', 'FAN28G2670' => 'fan', 'FvH4_1g12391' => 'fve', 'FvH4_4g23220' => 'fve', 'FvH4_5g08810' => 'fve', 'FvH4_5g28960' => 'fve', 'FvH4_6g42820' => 'fve', 'FvH4_6g51110' => 'fve', 'Glyma.02G051802' => 'gma', 'Glyma.04G185300' => 'gma', 'Glyma.05G202900' => 'gma', 'Glyma.08G010300' => 'gma', 'Glyma.16G131900' => 'gma', 'Glyma.17G087900' => 'gma', 'Gohir.A07G048600' => 'ghi', 'Gohir.A11G179000' => 'ghi', 'Gohir.A12G140900' => 'ghi', 'Gohir.A12G140950' => 'ghi', 'Gohir.A12G191700' => 'ghi', 'Gohir.A13G086300' => 'ghi', 'Gohir.D07G052900' => 'ghi', 'Gohir.D11G186600' => 'ghi', 'Gohir.D12G145575' => 'ghi', 'Gohir.D12G145650' => 'ghi', 'Gohir.D12G145725' => 'ghi', 'Gohir.D12G194050' => 'ghi', 'Gohir.D13G091800' => 'ghi', 'Gorai.001G055900' => 'gra', 'Gorai.007G198400' => 'gra', 'Gorai.008G157000' => 'gra', 'Gorai.008G157100' => 'gra', 'Gorai.008G208700' => 'gra', 'Gorai.010G138700' => 'gra', 'GSVIVG01000977001' => 'vvi', 'GSVIVG01007708001' => 'vvi', 'GSVIVG01008587001' => 'vvi', 'GSVIVG01018849001' => 'vvi', 'GSVIVG01032432001' => 'vvi', 'HanXRQChr02g0034131' => 'han', 'HanXRQChr02g0035981' => 'han', 'HanXRQChr02g0035991' => 'han', 'HanXRQChr05g0155611' => 'han', 'HanXRQChr05g0155621' => 'han', 'HanXRQChr08g0236501' => 'han', 'HanXRQChr09g0261321' => 'han', 'HanXRQChr09g0272081' => 'han', 'HanXRQChr10g0310741' => 'han', 'HanXRQChr11g0325591' => 'han', 'HanXRQChr12g0385691' => 'han', 'HanXRQChr13g0387801' => 'han', 'HanXRQChr15g0463011' => 'han', 'Haze_03826' => 'cav', 'Haze_03827' => 'cav', 'Haze_07183' => 'cav', 'Haze_07537' => 'cav', 'Haze_07539' => 'cav', 'Haze_12461' => 'cav', 'Haze_16115' => 'cav', 'Haze_16808' => 'cav', 'Haze_18531' => 'cav', 'Hma1.2p1_0046F.1_g026700' => 'hma', 'Hma1.2p1_0046F.1_g026710' => 'hma', 'Hma1.2p1_0168F.1_g074340' => 'hma', 'Hma1.2p1_0266F.1_g107030' => 'hma', 'Hma1.2p1_0266F.1_g107060' => 'hma', 'Hma1.2p1_0275F.1_g110510' => 'hma', 'Hma1.2p1_0592F.1_g185490' => 'hma', 'Hma1.2p1_0592F.1_g185500' => 'hma', 'Hma1.2p1_0592F.1_g185510' => 'hma', 'Hma1.2p1_0592F.1_g185520' => 'hma', 'Hma1.2p1_0592F.1_g185530' => 'hma', 'Hma1.2p1_0818F.1_g223450' => 'hma', 'HPP92_009708' => 'vpl', 'HPP92_009793' => 'vpl', 'HPP92_009796' => 'vpl', 'HPP92_009797' => 'vpl', 'HPP92_014940' => 'vpl', 'HPP92_014988' => 'vpl', 'Hund02463' => 'sun', 'Hund02760' => 'sun', 'Hund05071' => 'sun', 'Hund10108' => 'sun', 'Hund11204' => 'sun', 'Hund14016' => 'sun', 'Hund16464' => 'sun', 'Lalb_Chr09g0333391' => 'lal', 'Lalb_Chr11g0070461' => 'lal', 'Lalb_Chr12g0201671' => 'lal', 'Lalb_Chr13g0297161' => 'lal', 'Lj1g0002823' => 'lja', 'Lj3C1074T6' => 'lonja', 'Lj4A212T28' => 'lonja', 'Lj4g0005516' => 'lja', 'Lj4g0013705' => 'lja', 'Lj4g0027865' => 'lja', 'Lj5C92G16' => 'lonja', 'Lj5C92T12' => 'lonja', 'Lj7C596T3' => 'lonja', 'Lj9A446G59' => 'lonja', 'Lj9A482G21' => 'lonja', 'Lsat_1_v5_gn_1_28261' => 'lsa', 'Lsat_1_v5_gn_1_28281' => 'lsa', 'Lsat_1_v5_gn_1_32721' => 'lsa', 'Lsat_1_v5_gn_4_151760' => 'lsa', 'Lsat_1_v5_gn_4_2120' => 'lsa', 'Lsat_1_v5_gn_4_75761' => 'lsa', 'Lsat_1_v5_gn_5_10920' => 'lsa', 'Manes.02G099900' => 'mes', 'Manes.11G096200' => 'mes', 'Manes.12G007200' => 'mes', 'Manes.14G048300' => 'mes', 'Manes.17G114700' => 'mes', 'Mapoly0002s0070' => 'mpo', 'Mapoly0029s0099' => 'mpo', 'MBI07_g24742_MAGBIO' => 'mbi', 'MBI10_g27988_MAGBIO' => 'mbi', 'MBI11_g13057_MAGBIO' => 'mbi', 'MD02G1137200' => 'mdo', 'MD06G1137200' => 'mdo', 'MD07G1122300' => 'mdo', 'MD09G1078200' => 'mdo', 'MD13G1123700' => 'mdo', 'MD14G1151900' => 'mdo', 'MD17G1030900' => 'mdo', 'MD17G1068200' => 'mdo', 'MD17G1068600' => 'mdo', 'Medtr3g077540' => 'mtr', 'Medtr4g105530' => 'mtr', 'Medtr8g076580' => 'mtr', 'Medtr8g076590' => 'mtr', 'Medtr8g096410' => 'mtr', 'MELO3C016411.2' => 'cme', 'MELO3C017780.2' => 'cme', 'MELO3C022560.2' => 'cme', 'MELO3C026187.2' => 'cme', 'MELO3C026286.2' => 'cme', 'MELO3C032854.2' => 'cme', 'Migut.H02495' => 'egut', 'Migut.I00561' => 'egut', 'Migut.K01015' => 'egut', 'Migut.K01016' => 'egut', 'Migut.L00743' => 'egut', 'Migut.L00744' => 'egut', 'Migut.L00746' => 'egut', 'Migut.L00798' => 'egut', 'Migut.L00799' => 'egut', 'Migut.N02096' => 'egut', 'MSTRG.11259' => 'ama', 'MSTRG.23142' => 'ama', 'MSTRG.2499' => 'ama', 'Nitab4.5_0000003g0730' => 'nta', 'Nitab4.5_0000137g0020' => 'nta', 'Nitab4.5_0000721g0210' => 'nta', 'Nitab4.5_0000723g0050' => 'nta', 'Nitab4.5_0000913g0070' => 'nta', 'Nitab4.5_0001332g0040' => 'nta', 'Nitab4.5_0001771g0050' => 'nta', 'Nitab4.5_0001918g0050' => 'nta', 'Nitab4.5_0002686g0030' => 'nta', 'Nitab4.5_0003156g0020' => 'nta', 'Nitab4.5_0003383g0040' => 'nta', 'Nitab4.5_0003918g0010' => 'nta', 'Nitab4.5_0006760g0010' => 'nta', 'Nn1g05981' => 'nnu', 'Nn1g06288' => 'nnu', 'Nn3g16371' => 'nnu', 'Nn3g16786' => 'nnu', 'Nn4g22232' => 'nnu', 'Oeu005144.1' => 'oeu', 'Oeu005145.1' => 'oeu', 'Oeu011348.1' => 'oeu', 'Oeu016415.1' => 'oeu', 'Oeu023501.1' => 'oeu', 'Oeu044473.1' => 'oeu', 'Oeu048892.2' => 'oeu', 'Os01g0549200' => 'osa', 'Os02g0469300' => 'osa', 'Os04g0311100' => 'osa', 'Os06g0474900' => 'osa', 'Os10g0181700' => 'osa', 'Os11g0454800' => 'osa', 'Peaxi162Scf00037g00714' => 'pax', 'Peaxi162Scf00084g01217' => 'pax', 'Peaxi162Scf00257g00217' => 'pax', 'Peaxi162Scf00516g00215' => 'pax', 'Peaxi162Scf00689g00123' => 'pax', 'PGR044G2719' => 'pgr', 'PGR083G1360' => 'pgr', 'PGR102G2849' => 'pgr', 'PGR119G2534' => 'pgr', 'PGSC0003DMG400003538' => 'stu', 'PGSC0003DMG400028138' => 'stu', 'PGSC0003DMG400031732' => 'stu', 'PGSC0003DMG400038165' => 'stu', 'Phvul.002G284600' => 'pvu', 'Phvul.003G258200' => 'pvu', 'Phvul.009G176500' => 'pvu', 'Potri.003G167201' => 'ptr', 'Potri.005G118400' => 'ptr', 'Potri.012G089000' => 'ptr', 'Potri.012G102800' => 'ptr', 'Potri.015G079400' => 'ptr', 'Potri.015G100900' => 'ptr', 'Pp3c14_9810' => 'ppa', 'Pp3c15_10450' => 'ppa', 'Pp3c20_19150' => 'ppa', 'Pp3c23_12740' => 'ppa', 'Pp3c23_6310' => 'ppa', 'Pp3c24_3720' => 'ppa', 'Pp3c27_2580' => 'ppa', 'Pp3c9_8990' => 'ppa', 'PRCOL_00002854' => 'pco', 'Prupe.1G221200' => 'ppe', 'Prupe.3G289000' => 'ppe', 'Prupe.5G147000' => 'ppe', 'Prupe.6G157300' => 'ppe', 'Prupe.7G163400' => 'ppe', 'Psat0s2177g0040' => 'psa', 'Psat3g174760' => 'psa', 'Psat3g192160' => 'psa', 'Psat4g058520' => 'psa', 'Psat4g096840' => 'psa', 'Psat7g037320' => 'psa', 'PSO017G1274' => 'pso', 'PSO017G5166' => 'pso', 'PSO063G4558' => 'pso', 'PSO170G4458' => 'pso', 'PSO170G5005' => 'pso', 'PSO210G6156' => 'pso', 'PSO210G6635' => 'pso', 'PSO210G7397' => 'pso', 'PSO210G7700' => 'pso', 'PSO455G0035' => 'pso', 'PSO455G0180' => 'pso', 'PSO478G4515' => 'pso', 'PSO832G1305' => 'pso', 'PSO832G3489' => 'pso', 'QL02p075247' => 'qlo', 'QL03p051148' => 'qlo', 'QL05p010313' => 'qlo', 'QL06p034627' => 'qlo', 'QL10p001889' => 'qlo', 'QL10p010846' => 'qlo', 'RcHm_v2.0_Chr1g0350621' => 'rch', 'RcHm_v2.0_Chr1g0350641' => 'rch', 'RcHm_v2.0_Chr2g0092891' => 'rch', 'RcHm_v2.0_Chr2g0100251' => 'rch', 'RcHm_v2.0_Chr2g0158661' => 'rch', 'RcHm_v2.0_Chr2g0172741' => 'rch', 'RcHm_v2.0_Chr4g0429571' => 'rch', 'RcHm_v2.0_Chr5g0042471' => 'rch', 'RcHm_v2.0_Chr7g0189451' => 'rch', 'Rhsim08G0052000' => 'rsi', 'Rhsim08G0174400' => 'rsi', 'Rhsim08G0193200' => 'rsi', 'Rhsim10G0214800' => 'rsi', 'Rhsim10G0214900' => 'rsi', 'Rhsim10G0215000' => 'rsi', 'Rhsim12G0022900' => 'rsi', 'Rhsim12G0177500' => 'rsi', 'Rhsim12G0177700' => 'rsi', 'Sabra03G0122600' => 'sbr', 'Sabra05G0097400' => 'sbr', 'Sabra12G0064100' => 'sbr', 'Sabra15G0121300' => 'sbr', 'SalBow2G0642' => 'sbo', 'SalBow5G2667' => 'sbo', 'SalBow5G4873' => 'sbo', 'SalBow8G2395' => 'sbo', 'Sc03g0003290' => 'sci', 'Sc10g0010130' => 'sci', 'Sc22g0003650' => 'sci', 'Sed0001603' => 'sed', 'Sed0004259' => 'sed', 'Sed0006789' => 'sed', 'Sed0011838' => 'sed', 'Sed0012964' => 'sed', 'Sed0016383' => 'sed', 'Sed0019010' => 'sed', 'Sed0020188' => 'sed', 'SEGI_04702' => 'sgi', 'SEGI_17231' => 'sgi', 'SEGI_18877' => 'sgi', 'SEGI_25196' => 'sgi', 'SEGI_25515' => 'sgi', 'SEGI_28445' => 'sgi', 'SEGI_37452' => 'sgi', 'SGA_v2.0_scaffold188G40336' => 'sas', 'SGA_v2.0_scaffold228G43247' => 'sas', 'SGA_v2.0_scaffold280G46853' => 'sas', 'SGA_v2.0_scaffold34G13808' => 'sas', 'SGA_v2.0_scaffold40G15576' => 'sas', 'SGA_v2.0_scaffold611G53188' => 'sas', 'SGA_v2.0_scaffold78G25461' => 'sas', 'SGA_v2.0_scaffold90G27888' => 'sas', 'SHI08601' => 'shi', 'SHI08606' => 'shi', 'SHI17117' => 'shi', 'SHI17119' => 'shi', 'SMO118G0201' => 'smo', 'SMO169G0247' => 'smo', 'SMO176G0006' => 'smo', 'SMO176G0015' => 'smo', 'SMO202G0006' => 'smo', 'SMO240G0050' => 'smo', 'SMO286G0009' => 'smo', 'SMO338G0033' => 'smo', 'SMO356G0533' => 'smo', 'SMO364G0382' => 'smo', 'SMO367G0166' => 'smo', 'SMO367G1098' => 'smo', 'Solyc01g009920.3' => 'sly', 'Solyc01g099300.3' => 'sly', 'Solyc02g084700.3' => 'sly', 'Solyc03g097520.3' => 'sly', 'Solyc06g071580.3' => 'sly', 'Solyc10g081760.3' => 'sly', 'Sopen01g005480' => 'spe', 'Sopen01g042850' => 'spe', 'Sopen02g029370' => 'spe', 'Sopen03g028280' => 'spe', 'Sopen06g027870' => 'spe', 'Sopen10g032270' => 'spe', 'Sp5g18180' => 'spa', 'Sp6g12880' => 'spa', 'Sp6g30850' => 'spa', 'Sp7g22960' => 'spa', 'Sp7g34010' => 'spa', 'SpUn1326_0010' => 'spa', 'TAR371G0242' => 'tar', 'TAR622G0638' => 'tar', 'TAR628G1548' => 'tar', 'TAR629G1079' => 'tar', 'TAR629G3413' => 'tar', 'THA.LOC104804249' => 'tha', 'THA.LOC104808315' => 'tha', 'THA.LOC104809238' => 'tha', 'THA.LOC104825484' => 'tha', 'Thecc.01G025500' => 'tca', 'Thecc.03G015800' => 'tca', 'Thecc.03G018000' => 'tca', 'Thecc.03G134800' => 'tca', 'Thecc.04G014700' => 'tca', 'Thhalv10006991m.g' => 'esa', 'Thhalv10012707m.g' => 'esa', 'Thhalv10015739m.g' => 'esa', 'Thhalv10024553m.g' => 'esa', 'Thhalv10024673m.g' => 'esa', 'Thhalv10029187m.g' => 'esa', 'TPR.G12971' => 'tpr', 'TPR.G29396' => 'tpr', 'TPR.G33376' => 'tpr', 'TPR.G35508' => 'tpr', 'TPR.G35516' => 'tpr', 'TPR.G37317' => 'tpr', 'TPR.G37389' => 'tpr', 'TPR.G37523' => 'tpr', 'TPR.G559' => 'tpr', 'TWI14G0070' => 'twi', 'TWI14G0729' => 'twi', 'TWI18G0596' => 'twi', 'TWI39G0780' => 'twi', 'TWI39G0850' => 'twi', 'TWI73G1052' => 'twi', 'unitig_52.g17485' => 'ugi', 'unitig_61.g26355' => 'ugi', 'vmacro01040' => 'vma', 'vmacro16731' => 'vma', 'vmacro18270' => 'vma', 'vmacro19142' => 'vma', 'vmacro19407' => 'vma', 'vmacro19408' => 'vma', 'vmacro21899' => 'vma', 'vmacro21900' => 'vma', 'vmacro21901' => 'vma', 'VMungo0251G0490' => 'vmu', 'VMungo0251G1748' => 'vmu', 'VMungo1309G0421' => 'vmu', 'Zm00001eb086500' => 'zma', 'Zm00001eb150680' => 'zma', 'Zm00001eb162330' => 'zma', 'Zm00001eb203130' => 'zma', 'Zm00001eb369480' => 'zma', 'Zm00001eb382340' => 'zma', 'Zm00001eb416360' => 'zma' ) $gf_id = 'HOM05D000902' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000902' ) $data_identifier = 'HOM05D000902' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 13, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 10, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 6, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 9, 'hma' => (int) 12, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 4, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 6, 'ppa' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 6, 'rch' => (int) 9, 'rsi' => (int) 9, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 12, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 3, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416360' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000902', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '663', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02470' => 'bna', 'A01p16260' => 'bna', 'A02p01680' => 'bna', 'A03p16600' => 'bna', 'A03p55660' => 'bna', 'A03p64160' => 'bna', 'A03p64170' => 'bna', 'A08p31900' => 'bna', 'A09p59530' => 'bna', 'A10p08230' => 'bna', 'A10p25090' => 'bna', 'Aa31LG3G7100' => 'aar', 'Aa31LG3G7110' => 'aar', 'Aa31LG6G13160' => 'aar', 'Aa31LG7G10770' => 'aar', 'Aa31LG7G3830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2723' => 'aag', 'Actinidia08045' => 'ach', 'Actinidia08888' => 'ach', 'Actinidia18333' => 'ach', 'Actinidia19334' => 'ach', 'Actinidia25552' => 'ach', 'Actinidia26089' => 'ach', 'Actinidia30615' => 'ach', 'Actinidia30616' => 'ach', 'Actinidia33083' => 'ach', 'Actinidia35762' => 'ach', 'Ah.02g110620' => 'amhyb', 'Ah.11g046390' => 'amhyb', 'AL1G31670' => 'aly', 'AL6G23730' => 'aly', 'AL7G14740' => 'aly', 'AL7G14750' => 'aly', 'AL7G14760' => 'aly', 'AL7G28220' => 'aly', 'AL8G24940' => 'aly', 'Aqoxy3G01665' => 'aox', 'Aqoxy3G02853' => 'aox', 'Aqoxy5G01513' => 'aox', 'Aqoxy5G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8SKA4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ75LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKDA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0LJZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7REX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZP4YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWX7I5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2QKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS0L9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPCD8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q161UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC7XCF' => 'arhy', 'AT1G19100' => 'ath', 'AT4G24970' => 'ath', 'AT4G36270' => 'ath', 'AT4G36280' => 'ath', 'AT4G36290' => 'ath', 'AT5G13130' => 'ath', 'AT5G50780' => 'ath', 'ATR0582G266' => 'atr', 'ATR0661G195' => 'atr', 'ATR1152G031' => 'atr', 'Atru.chr11.2382' => 'acertr', 'Atru.chr12.2337' => 'acertr', 'Atru.chr3.744' => 'acertr', 'Atru.chr6.1870' => 'acertr', 'Atru.chr9.2515' => 'acertr', 'AUR62004120' => 'cqu', 'AUR62005667' => 'cqu', 'AUR62007634' => 'cqu', 'AUR62008186' => 'cqu', 'AUR62008187' => 'cqu', 'AUR62008188' => 'cqu', 'AUR62027954' => 'cqu', 'AUR62028766' => 'cqu', 'AUR62028767' => 'cqu', 'AUR62028768' => 'cqu', 'AUR62028886' => 'cqu', 'AUR62029563' => 'cqu', 'AUR62038832' => 'cqu', 'BcaB01g04149' => 'bca', 'BcaB03g12940' => 'bca', 'BcaB03g13090' => 'bca', 'BcaB03g14466' => 'bca', 'BcaB05g24035' => 'bca', 'BcaC01g06050' => 'bca', 'BcaC04g19148' => 'bca', 'BcaC04g20761' => 'bca', 'BcaC06g32845' => 'bca', 'BcaC07g41274' => 'bca', 'BcaC09g50827' => 'bca', 'BcaNung00741' => 'bca', 'BcaNung00742' => 'bca', 'BcaNung01859' => 'bca', 'BcaNung03985' => 'bca', 'BcaNung03989' => 'bca', 'BcaNung05661' => 'bca', 'BolC1t00257H' => 'bol', 'BolC1t01956H' => 'bol', 'BolC2t06534H' => 'bol', 'BolC3t14334H' => 'bol', 'BolC5t30451H' => 'bol', 'BolC7t45880H' => 'bol', 'BolC7t46586H' => 'bol', 'BolC8t49301H' => 'bol', 'BolC8t51837H' => 'bol', 'BolC9t56822H' => 'bol', 'BolC9t59235H' => 'bol', 'BraA01t00234Z' => 'bra', 'BraA01t01563Z' => 'bra', 'BraA02t05147Z' => 'bra', 'BraA03t10947Z' => 'bra', 'BraA03t14633Z' => 'bra', 'BraA08t35112Z' => 'bra', 'BraA09t41330Z' => 'bra', 'BraA10t44570Z' => 'bra', 'C01p02670' => 'bna', 'C01p20260' => 'bna', 'C02p05890' => 'bna', 'C03p19530' => 'bna', 'C05p17470' => 'bna', 'C07p53900' => 'bna', 'C07p61630' => 'bna', 'C08p16800' => 'bna', 'C08p42810' => 'bna', 'C09p39480' => 'bna', 'C09p63980' => 'bna', 'CAN.G1001.7' => 'can', 'CAN.G1034.55' => 'can', 'CAN.G143.7' => 'can', 'CAN.G3340.1' => 'can', 'CAN.G358.19' => 'can', 'CAN.G373.2' => 'can', 'CAN.G674.16' => 'can', 'CAN.G674.17' => 'can', 'CAN.G674.18' => 'can', 'CAN.G732.2' => 'can', 'CAN.G732.3' => 'can', 'CAN.G993.39' => 'can', 'CANSAT01G2052' => 'cansat', 'CANSAT80G0070' => 'cansat', 'CANSAT80G0483' => 'cansat', 'CANSAT80G0625' => 'cansat', 'CARHR019690' => 'chi', 'CARHR080280' => 'chi', 'CARHR152750' => 'chi', 'CARHR152760' => 'chi', 'CARHR152770' => 'chi', 'CARHR200340' => 'chi', 'CARHR232370' => 'chi', 'CARHR244670' => 'chi', 'CARHR244680' => 'chi', 'CARHR257520' => 'chi', 'Carub.0001s1872' => 'cru', 'Carub.0006s1130' => 'cru', 'Carub.0007s0396' => 'cru', 'Carub.0007s0397' => 'cru', 'Carub.0007s1608' => 'cru', 'Carub.0008s1068' => 'cru', 'Carub.0008s1077' => 'cru', 'Ca_16158_v3' => 'car', 'Ca_17571_v3' => 'car', 'Ca_21936_v3' => 'car', 'Ca_22350_v3' => 'car', 'CBR_g22445' => 'cbr', 'CBR_g26290' => 'cbr', 'Cc04_g09610' => 'ccan', 'Cc04_g12280' => 'ccan', 'Cc07_g10230' => 'ccan', 'CDE02G0093' => 'cde', 'CDE02G0701' => 'cde', 'CDE04G1050' => 'cde', 'CDE05G1833' => 'cde', 'CDE05G3058' => 'cde', 'CDE05G3380' => 'cde', 'CDE06G0536' => 'cde', 'Cfa006923' => 'cfa', 'Cfa009402' => 'cfa', 'Cfa018751' => 'cfa', 'Cfa019164' => 'cfa', 'Cfa022935' => 'cfa', 'Ciclev10019081m.g' => 'ccl', 'Ciclev10025076m.g' => 'ccl', 'Ciclev10030712m.g' => 'ccl', 'Ciclev10033760m.g' => 'ccl', 'CiPaw.05G105600' => 'cil', 'CiPaw.08G136700' => 'cil', 'CiPaw.11G003900' => 'cil', 'CiPaw.11G023700' => 'cil', 'CiPaw.12G003700' => 'cil', 'ClCG06G017100' => 'cla', 'ClCG06G018110' => 'cla', 'ClCG07G008800' => 'cla', 'ClCG07G015330' => 'cla', 'COL.COLO4_13698' => 'col', 'COL.COLO4_16659' => 'col', 'COL.COLO4_21986' => 'col', 'COL.COLO4_24049' => 'col', 'COL.COLO4_29061' => 'col', 'COL.COLO4_29075' => 'col', 'COL.COLO4_30094' => 'col', 'Cpa.g.c33689' => 'cpa', 'Cpa.g.sc108.39' => 'cpa', 'Cpa.g.sc108.41' => 'cpa', 'Cpa.g.sc1163.1' => 'cpa', 'Cpa.g.sc4.155' => 'cpa', 'Cpa.g.sc6.194' => 'cpa', 'CsaV3_1G000340' => 'csa', 'CsaV3_1G001400' => 'csa', 'CsaV3_4G002220' => 'csa', 'CsaV3_4G005370' => 'csa', 'CSS0007487' => 'camsi', 'CSS0008066' => 'camsi', 'CSS0009120' => 'camsi', 'CSS0015512' => 'camsi', 'CSS0022409' => 'camsi', 'CSS0025358' => 'camsi', 'CSS0044547' => 'camsi', 'DCAR_013057' => 'dca', 'DCAR_015058' => 'dca', 'DCAR_016027' => 'dca', 'DCAR_017327' => 'dca', 'DCAR_020743' => 'dca', 'DCAR_026157' => 'dca', 'DCAR_032339' => 'dca', 'DCAR_032340' => 'dca', 'Dinv11200' => 'din', 'Dinv11201' => 'din', 'Dinv20631' => 'din', 'Dinv23182' => 'din', 'Dinv33466' => 'din', 'Dinv33583' => 'din', 'Dinv38565' => 'din', 'Duzib068G0200' => 'dzi', 'Duzib147G0132' => 'dzi', 'Duzib147G0635' => 'dzi', 'Duzib205G1670' => 'dzi', 'Duzib251G0606' => 'dzi', 'ECA232G3336' => 'eca', 'ECA232G3763' => 'eca', 'ECA232G4845' => 'eca', 'ECA234G1607' => 'eca', 'ECA246G0932' => 'eca', 'ECA247G0781' => 'eca', 'ECA247G1932' => 'eca', 'ECA247G2079' => 'eca', 'ECA247G3338' => 'eca', 'ECA247G4115' => 'eca', 'EL10Ac3g06552' => 'bvu', 'EL10Ac5g10721' => 'bvu', 'EL10Ac5g10722' => 'bvu', 'EL10Ac5g10723' => 'bvu', 'EL10Ac5g11361' => 'bvu', 'EL10Ac6g13553' => 'bvu', 'EL10As8g23872' => 'bvu', 'Eucgr.B00250' => 'egr', 'Eucgr.B00251' => 'egr', 'Eucgr.B03533' => 'egr', 'Eucgr.I02381' => 'egr', 'Eucgr.K02700' => 'egr', 'FAN02G0174' => 'fan', 'FAN02G3146' => 'fan', 'FAN04G1672' => 'fan', 'FAN04G2273' => 'fan', 'FAN05G2791' => 'fan', 'FAN05G4035' => 'fan', 'FAN07G0834' => 'fan', 'FAN08G1198' => 'fan', 'FAN09G4182' => 'fan', 'FAN12G0496' => 'fan', 'FAN13G1027' => 'fan', 'FAN13G2951' => 'fan', 'FAN14G0705' => 'fan', 'FAN14G0720' => 'fan', 'FAN17G0201' => 'fan', 'FAN17G2665' => 'fan', 'FAN18G1456' => 'fan', 'FAN18G1525' => 'fan', 'FAN18G3500' => 'fan', 'FAN28G2670' => 'fan', 'FvH4_1g12391' => 'fve', 'FvH4_4g23220' => 'fve', 'FvH4_5g08810' => 'fve', 'FvH4_5g28960' => 'fve', 'FvH4_6g42820' => 'fve', 'FvH4_6g51110' => 'fve', 'Glyma.02G051802' => 'gma', 'Glyma.04G185300' => 'gma', 'Glyma.05G202900' => 'gma', 'Glyma.08G010300' => 'gma', 'Glyma.16G131900' => 'gma', 'Glyma.17G087900' => 'gma', 'Gohir.A07G048600' => 'ghi', 'Gohir.A11G179000' => 'ghi', 'Gohir.A12G140900' => 'ghi', 'Gohir.A12G140950' => 'ghi', 'Gohir.A12G191700' => 'ghi', 'Gohir.A13G086300' => 'ghi', 'Gohir.D07G052900' => 'ghi', 'Gohir.D11G186600' => 'ghi', 'Gohir.D12G145575' => 'ghi', 'Gohir.D12G145650' => 'ghi', 'Gohir.D12G145725' => 'ghi', 'Gohir.D12G194050' => 'ghi', 'Gohir.D13G091800' => 'ghi', 'Gorai.001G055900' => 'gra', 'Gorai.007G198400' => 'gra', 'Gorai.008G157000' => 'gra', 'Gorai.008G157100' => 'gra', 'Gorai.008G208700' => 'gra', 'Gorai.010G138700' => 'gra', 'GSVIVG01000977001' => 'vvi', 'GSVIVG01007708001' => 'vvi', 'GSVIVG01008587001' => 'vvi', 'GSVIVG01018849001' => 'vvi', 'GSVIVG01032432001' => 'vvi', 'HanXRQChr02g0034131' => 'han', 'HanXRQChr02g0035981' => 'han', 'HanXRQChr02g0035991' => 'han', 'HanXRQChr05g0155611' => 'han', 'HanXRQChr05g0155621' => 'han', 'HanXRQChr08g0236501' => 'han', 'HanXRQChr09g0261321' => 'han', 'HanXRQChr09g0272081' => 'han', 'HanXRQChr10g0310741' => 'han', 'HanXRQChr11g0325591' => 'han', 'HanXRQChr12g0385691' => 'han', 'HanXRQChr13g0387801' => 'han', 'HanXRQChr15g0463011' => 'han', 'Haze_03826' => 'cav', 'Haze_03827' => 'cav', 'Haze_07183' => 'cav', 'Haze_07537' => 'cav', 'Haze_07539' => 'cav', 'Haze_12461' => 'cav', 'Haze_16115' => 'cav', 'Haze_16808' => 'cav', 'Haze_18531' => 'cav', 'Hma1.2p1_0046F.1_g026700' => 'hma', 'Hma1.2p1_0046F.1_g026710' => 'hma', 'Hma1.2p1_0168F.1_g074340' => 'hma', 'Hma1.2p1_0266F.1_g107030' => 'hma', 'Hma1.2p1_0266F.1_g107060' => 'hma', 'Hma1.2p1_0275F.1_g110510' => 'hma', 'Hma1.2p1_0592F.1_g185490' => 'hma', 'Hma1.2p1_0592F.1_g185500' => 'hma', 'Hma1.2p1_0592F.1_g185510' => 'hma', 'Hma1.2p1_0592F.1_g185520' => 'hma', 'Hma1.2p1_0592F.1_g185530' => 'hma', 'Hma1.2p1_0818F.1_g223450' => 'hma', 'HPP92_009708' => 'vpl', 'HPP92_009793' => 'vpl', 'HPP92_009796' => 'vpl', 'HPP92_009797' => 'vpl', 'HPP92_014940' => 'vpl', 'HPP92_014988' => 'vpl', 'Hund02463' => 'sun', 'Hund02760' => 'sun', 'Hund05071' => 'sun', 'Hund10108' => 'sun', 'Hund11204' => 'sun', 'Hund14016' => 'sun', 'Hund16464' => 'sun', 'Lalb_Chr09g0333391' => 'lal', 'Lalb_Chr11g0070461' => 'lal', 'Lalb_Chr12g0201671' => 'lal', 'Lalb_Chr13g0297161' => 'lal', 'Lj1g0002823' => 'lja', 'Lj3C1074T6' => 'lonja', 'Lj4A212T28' => 'lonja', 'Lj4g0005516' => 'lja', 'Lj4g0013705' => 'lja', 'Lj4g0027865' => 'lja', 'Lj5C92G16' => 'lonja', 'Lj5C92T12' => 'lonja', 'Lj7C596T3' => 'lonja', 'Lj9A446G59' => 'lonja', 'Lj9A482G21' => 'lonja', 'Lsat_1_v5_gn_1_28261' => 'lsa', 'Lsat_1_v5_gn_1_28281' => 'lsa', 'Lsat_1_v5_gn_1_32721' => 'lsa', 'Lsat_1_v5_gn_4_151760' => 'lsa', 'Lsat_1_v5_gn_4_2120' => 'lsa', 'Lsat_1_v5_gn_4_75761' => 'lsa', 'Lsat_1_v5_gn_5_10920' => 'lsa', 'Manes.02G099900' => 'mes', 'Manes.11G096200' => 'mes', 'Manes.12G007200' => 'mes', 'Manes.14G048300' => 'mes', 'Manes.17G114700' => 'mes', 'Mapoly0002s0070' => 'mpo', 'Mapoly0029s0099' => 'mpo', 'MBI07_g24742_MAGBIO' => 'mbi', 'MBI10_g27988_MAGBIO' => 'mbi', 'MBI11_g13057_MAGBIO' => 'mbi', 'MD02G1137200' => 'mdo', 'MD06G1137200' => 'mdo', 'MD07G1122300' => 'mdo', 'MD09G1078200' => 'mdo', 'MD13G1123700' => 'mdo', 'MD14G1151900' => 'mdo', 'MD17G1030900' => 'mdo', 'MD17G1068200' => 'mdo', 'MD17G1068600' => 'mdo', 'Medtr3g077540' => 'mtr', 'Medtr4g105530' => 'mtr', 'Medtr8g076580' => 'mtr', 'Medtr8g076590' => 'mtr', 'Medtr8g096410' => 'mtr', 'MELO3C016411.2' => 'cme', 'MELO3C017780.2' => 'cme', 'MELO3C022560.2' => 'cme', 'MELO3C026187.2' => 'cme', 'MELO3C026286.2' => 'cme', 'MELO3C032854.2' => 'cme', 'Migut.H02495' => 'egut', 'Migut.I00561' => 'egut', 'Migut.K01015' => 'egut', 'Migut.K01016' => 'egut', 'Migut.L00743' => 'egut', 'Migut.L00744' => 'egut', 'Migut.L00746' => 'egut', 'Migut.L00798' => 'egut', 'Migut.L00799' => 'egut', 'Migut.N02096' => 'egut', 'MSTRG.11259' => 'ama', 'MSTRG.23142' => 'ama', 'MSTRG.2499' => 'ama', 'Nitab4.5_0000003g0730' => 'nta', 'Nitab4.5_0000137g0020' => 'nta', 'Nitab4.5_0000721g0210' => 'nta', 'Nitab4.5_0000723g0050' => 'nta', 'Nitab4.5_0000913g0070' => 'nta', 'Nitab4.5_0001332g0040' => 'nta', 'Nitab4.5_0001771g0050' => 'nta', 'Nitab4.5_0001918g0050' => 'nta', 'Nitab4.5_0002686g0030' => 'nta', 'Nitab4.5_0003156g0020' => 'nta', 'Nitab4.5_0003383g0040' => 'nta', 'Nitab4.5_0003918g0010' => 'nta', 'Nitab4.5_0006760g0010' => 'nta', 'Nn1g05981' => 'nnu', 'Nn1g06288' => 'nnu', 'Nn3g16371' => 'nnu', 'Nn3g16786' => 'nnu', 'Nn4g22232' => 'nnu', 'Oeu005144.1' => 'oeu', 'Oeu005145.1' => 'oeu', 'Oeu011348.1' => 'oeu', 'Oeu016415.1' => 'oeu', 'Oeu023501.1' => 'oeu', 'Oeu044473.1' => 'oeu', 'Oeu048892.2' => 'oeu', 'Os01g0549200' => 'osa', 'Os02g0469300' => 'osa', 'Os04g0311100' => 'osa', 'Os06g0474900' => 'osa', 'Os10g0181700' => 'osa', 'Os11g0454800' => 'osa', 'Peaxi162Scf00037g00714' => 'pax', 'Peaxi162Scf00084g01217' => 'pax', 'Peaxi162Scf00257g00217' => 'pax', 'Peaxi162Scf00516g00215' => 'pax', 'Peaxi162Scf00689g00123' => 'pax', 'PGR044G2719' => 'pgr', 'PGR083G1360' => 'pgr', 'PGR102G2849' => 'pgr', 'PGR119G2534' => 'pgr', 'PGSC0003DMG400003538' => 'stu', 'PGSC0003DMG400028138' => 'stu', 'PGSC0003DMG400031732' => 'stu', 'PGSC0003DMG400038165' => 'stu', 'Phvul.002G284600' => 'pvu', 'Phvul.003G258200' => 'pvu', 'Phvul.009G176500' => 'pvu', 'Potri.003G167201' => 'ptr', 'Potri.005G118400' => 'ptr', 'Potri.012G089000' => 'ptr', 'Potri.012G102800' => 'ptr', 'Potri.015G079400' => 'ptr', 'Potri.015G100900' => 'ptr', 'Pp3c14_9810' => 'ppa', 'Pp3c15_10450' => 'ppa', 'Pp3c20_19150' => 'ppa', 'Pp3c23_12740' => 'ppa', 'Pp3c23_6310' => 'ppa', 'Pp3c24_3720' => 'ppa', 'Pp3c27_2580' => 'ppa', 'Pp3c9_8990' => 'ppa', 'PRCOL_00002854' => 'pco', 'Prupe.1G221200' => 'ppe', 'Prupe.3G289000' => 'ppe', 'Prupe.5G147000' => 'ppe', 'Prupe.6G157300' => 'ppe', 'Prupe.7G163400' => 'ppe', 'Psat0s2177g0040' => 'psa', 'Psat3g174760' => 'psa', 'Psat3g192160' => 'psa', 'Psat4g058520' => 'psa', 'Psat4g096840' => 'psa', 'Psat7g037320' => 'psa', 'PSO017G1274' => 'pso', 'PSO017G5166' => 'pso', 'PSO063G4558' => 'pso', 'PSO170G4458' => 'pso', 'PSO170G5005' => 'pso', 'PSO210G6156' => 'pso', 'PSO210G6635' => 'pso', 'PSO210G7397' => 'pso', 'PSO210G7700' => 'pso', 'PSO455G0035' => 'pso', 'PSO455G0180' => 'pso', 'PSO478G4515' => 'pso', 'PSO832G1305' => 'pso', 'PSO832G3489' => 'pso', 'QL02p075247' => 'qlo', 'QL03p051148' => 'qlo', 'QL05p010313' => 'qlo', 'QL06p034627' => 'qlo', 'QL10p001889' => 'qlo', 'QL10p010846' => 'qlo', 'RcHm_v2.0_Chr1g0350621' => 'rch', 'RcHm_v2.0_Chr1g0350641' => 'rch', 'RcHm_v2.0_Chr2g0092891' => 'rch', 'RcHm_v2.0_Chr2g0100251' => 'rch', 'RcHm_v2.0_Chr2g0158661' => 'rch', 'RcHm_v2.0_Chr2g0172741' => 'rch', 'RcHm_v2.0_Chr4g0429571' => 'rch', 'RcHm_v2.0_Chr5g0042471' => 'rch', 'RcHm_v2.0_Chr7g0189451' => 'rch', 'Rhsim08G0052000' => 'rsi', 'Rhsim08G0174400' => 'rsi', 'Rhsim08G0193200' => 'rsi', 'Rhsim10G0214800' => 'rsi', 'Rhsim10G0214900' => 'rsi', 'Rhsim10G0215000' => 'rsi', 'Rhsim12G0022900' => 'rsi', 'Rhsim12G0177500' => 'rsi', 'Rhsim12G0177700' => 'rsi', 'Sabra03G0122600' => 'sbr', 'Sabra05G0097400' => 'sbr', 'Sabra12G0064100' => 'sbr', 'Sabra15G0121300' => 'sbr', 'SalBow2G0642' => 'sbo', 'SalBow5G2667' => 'sbo', 'SalBow5G4873' => 'sbo', 'SalBow8G2395' => 'sbo', 'Sc03g0003290' => 'sci', 'Sc10g0010130' => 'sci', 'Sc22g0003650' => 'sci', 'Sed0001603' => 'sed', 'Sed0004259' => 'sed', 'Sed0006789' => 'sed', 'Sed0011838' => 'sed', 'Sed0012964' => 'sed', 'Sed0016383' => 'sed', 'Sed0019010' => 'sed', 'Sed0020188' => 'sed', 'SEGI_04702' => 'sgi', 'SEGI_17231' => 'sgi', 'SEGI_18877' => 'sgi', 'SEGI_25196' => 'sgi', 'SEGI_25515' => 'sgi', 'SEGI_28445' => 'sgi', 'SEGI_37452' => 'sgi', 'SGA_v2.0_scaffold188G40336' => 'sas', 'SGA_v2.0_scaffold228G43247' => 'sas', 'SGA_v2.0_scaffold280G46853' => 'sas', 'SGA_v2.0_scaffold34G13808' => 'sas', 'SGA_v2.0_scaffold40G15576' => 'sas', 'SGA_v2.0_scaffold611G53188' => 'sas', 'SGA_v2.0_scaffold78G25461' => 'sas', 'SGA_v2.0_scaffold90G27888' => 'sas', 'SHI08601' => 'shi', 'SHI08606' => 'shi', 'SHI17117' => 'shi', 'SHI17119' => 'shi', 'SMO118G0201' => 'smo', 'SMO169G0247' => 'smo', 'SMO176G0006' => 'smo', 'SMO176G0015' => 'smo', 'SMO202G0006' => 'smo', 'SMO240G0050' => 'smo', 'SMO286G0009' => 'smo', 'SMO338G0033' => 'smo', 'SMO356G0533' => 'smo', 'SMO364G0382' => 'smo', 'SMO367G0166' => 'smo', 'SMO367G1098' => 'smo', 'Solyc01g009920.3' => 'sly', 'Solyc01g099300.3' => 'sly', 'Solyc02g084700.3' => 'sly', 'Solyc03g097520.3' => 'sly', 'Solyc06g071580.3' => 'sly', 'Solyc10g081760.3' => 'sly', 'Sopen01g005480' => 'spe', 'Sopen01g042850' => 'spe', 'Sopen02g029370' => 'spe', 'Sopen03g028280' => 'spe', 'Sopen06g027870' => 'spe', 'Sopen10g032270' => 'spe', 'Sp5g18180' => 'spa', 'Sp6g12880' => 'spa', 'Sp6g30850' => 'spa', 'Sp7g22960' => 'spa', 'Sp7g34010' => 'spa', 'SpUn1326_0010' => 'spa', 'TAR371G0242' => 'tar', 'TAR622G0638' => 'tar', 'TAR628G1548' => 'tar', 'TAR629G1079' => 'tar', 'TAR629G3413' => 'tar', 'THA.LOC104804249' => 'tha', 'THA.LOC104808315' => 'tha', 'THA.LOC104809238' => 'tha', 'THA.LOC104825484' => 'tha', 'Thecc.01G025500' => 'tca', 'Thecc.03G015800' => 'tca', 'Thecc.03G018000' => 'tca', 'Thecc.03G134800' => 'tca', 'Thecc.04G014700' => 'tca', 'Thhalv10006991m.g' => 'esa', 'Thhalv10012707m.g' => 'esa', 'Thhalv10015739m.g' => 'esa', 'Thhalv10024553m.g' => 'esa', 'Thhalv10024673m.g' => 'esa', 'Thhalv10029187m.g' => 'esa', 'TPR.G12971' => 'tpr', 'TPR.G29396' => 'tpr', 'TPR.G33376' => 'tpr', 'TPR.G35508' => 'tpr', 'TPR.G35516' => 'tpr', 'TPR.G37317' => 'tpr', 'TPR.G37389' => 'tpr', 'TPR.G37523' => 'tpr', 'TPR.G559' => 'tpr', 'TWI14G0070' => 'twi', 'TWI14G0729' => 'twi', 'TWI18G0596' => 'twi', 'TWI39G0780' => 'twi', 'TWI39G0850' => 'twi', 'TWI73G1052' => 'twi', 'unitig_52.g17485' => 'ugi', 'unitig_61.g26355' => 'ugi', 'vmacro01040' => 'vma', 'vmacro16731' => 'vma', 'vmacro18270' => 'vma', 'vmacro19142' => 'vma', 'vmacro19407' => 'vma', 'vmacro19408' => 'vma', 'vmacro21899' => 'vma', 'vmacro21900' => 'vma', 'vmacro21901' => 'vma', 'VMungo0251G0490' => 'vmu', 'VMungo0251G1748' => 'vmu', 'VMungo1309G0421' => 'vmu', 'Zm00001eb086500' => 'zma', 'Zm00001eb150680' => 'zma', 'Zm00001eb162330' => 'zma', 'Zm00001eb203130' => 'zma', 'Zm00001eb369480' => 'zma', 'Zm00001eb382340' => 'zma', 'Zm00001eb416360' => 'zma' ), 'gf_id' => 'HOM05D000902', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000902' ), 'data_identifier' => 'HOM05D000902', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000902', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '663', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02470' => 'bna', 'A01p16260' => 'bna', 'A02p01680' => 'bna', 'A03p16600' => 'bna', 'A03p55660' => 'bna', 'A03p64160' => 'bna', 'A03p64170' => 'bna', 'A08p31900' => 'bna', 'A09p59530' => 'bna', 'A10p08230' => 'bna', 'A10p25090' => 'bna', 'Aa31LG3G7100' => 'aar', 'Aa31LG3G7110' => 'aar', 'Aa31LG6G13160' => 'aar', 'Aa31LG7G10770' => 'aar', 'Aa31LG7G3830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2723' => 'aag', 'Actinidia08045' => 'ach', 'Actinidia08888' => 'ach', 'Actinidia18333' => 'ach', 'Actinidia19334' => 'ach', 'Actinidia25552' => 'ach', 'Actinidia26089' => 'ach', 'Actinidia30615' => 'ach', 'Actinidia30616' => 'ach', 'Actinidia33083' => 'ach', 'Actinidia35762' => 'ach', 'Ah.02g110620' => 'amhyb', 'Ah.11g046390' => 'amhyb', 'AL1G31670' => 'aly', 'AL6G23730' => 'aly', 'AL7G14740' => 'aly', 'AL7G14750' => 'aly', 'AL7G14760' => 'aly', 'AL7G28220' => 'aly', 'AL8G24940' => 'aly', 'Aqoxy3G01665' => 'aox', 'Aqoxy3G02853' => 'aox', 'Aqoxy5G01513' => 'aox', 'Aqoxy5G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8SKA4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ75LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKDA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0LJZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7REX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZP4YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWX7I5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2QKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS0L9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPCD8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q161UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC7XCF' => 'arhy', 'AT1G19100' => 'ath', 'AT4G24970' => 'ath', 'AT4G36270' => 'ath', 'AT4G36280' => 'ath', 'AT4G36290' => 'ath', 'AT5G13130' => 'ath', 'AT5G50780' => 'ath', 'ATR0582G266' => 'atr', 'ATR0661G195' => 'atr', 'ATR1152G031' => 'atr', 'Atru.chr11.2382' => 'acertr', 'Atru.chr12.2337' => 'acertr', 'Atru.chr3.744' => 'acertr', 'Atru.chr6.1870' => 'acertr', 'Atru.chr9.2515' => 'acertr', 'AUR62004120' => 'cqu', 'AUR62005667' => 'cqu', 'AUR62007634' => 'cqu', 'AUR62008186' => 'cqu', 'AUR62008187' => 'cqu', 'AUR62008188' => 'cqu', 'AUR62027954' => 'cqu', 'AUR62028766' => 'cqu', 'AUR62028767' => 'cqu', 'AUR62028768' => 'cqu', 'AUR62028886' => 'cqu', 'AUR62029563' => 'cqu', 'AUR62038832' => 'cqu', 'BcaB01g04149' => 'bca', 'BcaB03g12940' => 'bca', 'BcaB03g13090' => 'bca', 'BcaB03g14466' => 'bca', 'BcaB05g24035' => 'bca', 'BcaC01g06050' => 'bca', 'BcaC04g19148' => 'bca', 'BcaC04g20761' => 'bca', 'BcaC06g32845' => 'bca', 'BcaC07g41274' => 'bca', 'BcaC09g50827' => 'bca', 'BcaNung00741' => 'bca', 'BcaNung00742' => 'bca', 'BcaNung01859' => 'bca', 'BcaNung03985' => 'bca', 'BcaNung03989' => 'bca', 'BcaNung05661' => 'bca', 'BolC1t00257H' => 'bol', 'BolC1t01956H' => 'bol', 'BolC2t06534H' => 'bol', 'BolC3t14334H' => 'bol', 'BolC5t30451H' => 'bol', 'BolC7t45880H' => 'bol', 'BolC7t46586H' => 'bol', 'BolC8t49301H' => 'bol', 'BolC8t51837H' => 'bol', 'BolC9t56822H' => 'bol', 'BolC9t59235H' => 'bol', 'BraA01t00234Z' => 'bra', 'BraA01t01563Z' => 'bra', 'BraA02t05147Z' => 'bra', 'BraA03t10947Z' => 'bra', 'BraA03t14633Z' => 'bra', 'BraA08t35112Z' => 'bra', 'BraA09t41330Z' => 'bra', 'BraA10t44570Z' => 'bra', 'C01p02670' => 'bna', 'C01p20260' => 'bna', 'C02p05890' => 'bna', 'C03p19530' => 'bna', 'C05p17470' => 'bna', 'C07p53900' => 'bna', 'C07p61630' => 'bna', 'C08p16800' => 'bna', 'C08p42810' => 'bna', 'C09p39480' => 'bna', 'C09p63980' => 'bna', 'CAN.G1001.7' => 'can', 'CAN.G1034.55' => 'can', 'CAN.G143.7' => 'can', 'CAN.G3340.1' => 'can', 'CAN.G358.19' => 'can', 'CAN.G373.2' => 'can', 'CAN.G674.16' => 'can', 'CAN.G674.17' => 'can', 'CAN.G674.18' => 'can', 'CAN.G732.2' => 'can', 'CAN.G732.3' => 'can', 'CAN.G993.39' => 'can', 'CANSAT01G2052' => 'cansat', 'CANSAT80G0070' => 'cansat', 'CANSAT80G0483' => 'cansat', 'CANSAT80G0625' => 'cansat', 'CARHR019690' => 'chi', 'CARHR080280' => 'chi', 'CARHR152750' => 'chi', 'CARHR152760' => 'chi', 'CARHR152770' => 'chi', 'CARHR200340' => 'chi', 'CARHR232370' => 'chi', 'CARHR244670' => 'chi', 'CARHR244680' => 'chi', 'CARHR257520' => 'chi', 'Carub.0001s1872' => 'cru', 'Carub.0006s1130' => 'cru', 'Carub.0007s0396' => 'cru', 'Carub.0007s0397' => 'cru', 'Carub.0007s1608' => 'cru', 'Carub.0008s1068' => 'cru', 'Carub.0008s1077' => 'cru', 'Ca_16158_v3' => 'car', 'Ca_17571_v3' => 'car', 'Ca_21936_v3' => 'car', 'Ca_22350_v3' => 'car', 'CBR_g22445' => 'cbr', 'CBR_g26290' => 'cbr', 'Cc04_g09610' => 'ccan', 'Cc04_g12280' => 'ccan', 'Cc07_g10230' => 'ccan', 'CDE02G0093' => 'cde', 'CDE02G0701' => 'cde', 'CDE04G1050' => 'cde', 'CDE05G1833' => 'cde', 'CDE05G3058' => 'cde', 'CDE05G3380' => 'cde', 'CDE06G0536' => 'cde', 'Cfa006923' => 'cfa', 'Cfa009402' => 'cfa', 'Cfa018751' => 'cfa', 'Cfa019164' => 'cfa', 'Cfa022935' => 'cfa', 'Ciclev10019081m.g' => 'ccl', 'Ciclev10025076m.g' => 'ccl', 'Ciclev10030712m.g' => 'ccl', 'Ciclev10033760m.g' => 'ccl', 'CiPaw.05G105600' => 'cil', 'CiPaw.08G136700' => 'cil', 'CiPaw.11G003900' => 'cil', 'CiPaw.11G023700' => 'cil', 'CiPaw.12G003700' => 'cil', 'ClCG06G017100' => 'cla', 'ClCG06G018110' => 'cla', 'ClCG07G008800' => 'cla', 'ClCG07G015330' => 'cla', 'COL.COLO4_13698' => 'col', 'COL.COLO4_16659' => 'col', 'COL.COLO4_21986' => 'col', 'COL.COLO4_24049' => 'col', 'COL.COLO4_29061' => 'col', 'COL.COLO4_29075' => 'col', 'COL.COLO4_30094' => 'col', 'Cpa.g.c33689' => 'cpa', 'Cpa.g.sc108.39' => 'cpa', 'Cpa.g.sc108.41' => 'cpa', 'Cpa.g.sc1163.1' => 'cpa', 'Cpa.g.sc4.155' => 'cpa', 'Cpa.g.sc6.194' => 'cpa', 'CsaV3_1G000340' => 'csa', 'CsaV3_1G001400' => 'csa', 'CsaV3_4G002220' => 'csa', 'CsaV3_4G005370' => 'csa', 'CSS0007487' => 'camsi', 'CSS0008066' => 'camsi', 'CSS0009120' => 'camsi', 'CSS0015512' => 'camsi', 'CSS0022409' => 'camsi', 'CSS0025358' => 'camsi', 'CSS0044547' => 'camsi', 'DCAR_013057' => 'dca', 'DCAR_015058' => 'dca', 'DCAR_016027' => 'dca', 'DCAR_017327' => 'dca', 'DCAR_020743' => 'dca', 'DCAR_026157' => 'dca', 'DCAR_032339' => 'dca', 'DCAR_032340' => 'dca', 'Dinv11200' => 'din', 'Dinv11201' => 'din', 'Dinv20631' => 'din', 'Dinv23182' => 'din', 'Dinv33466' => 'din', 'Dinv33583' => 'din', 'Dinv38565' => 'din', 'Duzib068G0200' => 'dzi', 'Duzib147G0132' => 'dzi', 'Duzib147G0635' => 'dzi', 'Duzib205G1670' => 'dzi', 'Duzib251G0606' => 'dzi', 'ECA232G3336' => 'eca', 'ECA232G3763' => 'eca', 'ECA232G4845' => 'eca', 'ECA234G1607' => 'eca', 'ECA246G0932' => 'eca', 'ECA247G0781' => 'eca', 'ECA247G1932' => 'eca', 'ECA247G2079' => 'eca', 'ECA247G3338' => 'eca', 'ECA247G4115' => 'eca', 'EL10Ac3g06552' => 'bvu', 'EL10Ac5g10721' => 'bvu', 'EL10Ac5g10722' => 'bvu', 'EL10Ac5g10723' => 'bvu', 'EL10Ac5g11361' => 'bvu', 'EL10Ac6g13553' => 'bvu', 'EL10As8g23872' => 'bvu', 'Eucgr.B00250' => 'egr', 'Eucgr.B00251' => 'egr', 'Eucgr.B03533' => 'egr', 'Eucgr.I02381' => 'egr', 'Eucgr.K02700' => 'egr', 'FAN02G0174' => 'fan', 'FAN02G3146' => 'fan', 'FAN04G1672' => 'fan', 'FAN04G2273' => 'fan', 'FAN05G2791' => 'fan', 'FAN05G4035' => 'fan', 'FAN07G0834' => 'fan', 'FAN08G1198' => 'fan', 'FAN09G4182' => 'fan', 'FAN12G0496' => 'fan', 'FAN13G1027' => 'fan', 'FAN13G2951' => 'fan', 'FAN14G0705' => 'fan', 'FAN14G0720' => 'fan', 'FAN17G0201' => 'fan', 'FAN17G2665' => 'fan', 'FAN18G1456' => 'fan', 'FAN18G1525' => 'fan', 'FAN18G3500' => 'fan', 'FAN28G2670' => 'fan', 'FvH4_1g12391' => 'fve', 'FvH4_4g23220' => 'fve', 'FvH4_5g08810' => 'fve', 'FvH4_5g28960' => 'fve', 'FvH4_6g42820' => 'fve', 'FvH4_6g51110' => 'fve', 'Glyma.02G051802' => 'gma', 'Glyma.04G185300' => 'gma', 'Glyma.05G202900' => 'gma', 'Glyma.08G010300' => 'gma', 'Glyma.16G131900' => 'gma', 'Glyma.17G087900' => 'gma', 'Gohir.A07G048600' => 'ghi', 'Gohir.A11G179000' => 'ghi', 'Gohir.A12G140900' => 'ghi', 'Gohir.A12G140950' => 'ghi', 'Gohir.A12G191700' => 'ghi', 'Gohir.A13G086300' => 'ghi', 'Gohir.D07G052900' => 'ghi', 'Gohir.D11G186600' => 'ghi', 'Gohir.D12G145575' => 'ghi', 'Gohir.D12G145650' => 'ghi', 'Gohir.D12G145725' => 'ghi', 'Gohir.D12G194050' => 'ghi', 'Gohir.D13G091800' => 'ghi', 'Gorai.001G055900' => 'gra', 'Gorai.007G198400' => 'gra', 'Gorai.008G157000' => 'gra', 'Gorai.008G157100' => 'gra', 'Gorai.008G208700' => 'gra', 'Gorai.010G138700' => 'gra', 'GSVIVG01000977001' => 'vvi', 'GSVIVG01007708001' => 'vvi', 'GSVIVG01008587001' => 'vvi', 'GSVIVG01018849001' => 'vvi', 'GSVIVG01032432001' => 'vvi', 'HanXRQChr02g0034131' => 'han', 'HanXRQChr02g0035981' => 'han', 'HanXRQChr02g0035991' => 'han', 'HanXRQChr05g0155611' => 'han', 'HanXRQChr05g0155621' => 'han', 'HanXRQChr08g0236501' => 'han', 'HanXRQChr09g0261321' => 'han', 'HanXRQChr09g0272081' => 'han', 'HanXRQChr10g0310741' => 'han', 'HanXRQChr11g0325591' => 'han', 'HanXRQChr12g0385691' => 'han', 'HanXRQChr13g0387801' => 'han', 'HanXRQChr15g0463011' => 'han', 'Haze_03826' => 'cav', 'Haze_03827' => 'cav', 'Haze_07183' => 'cav', 'Haze_07537' => 'cav', 'Haze_07539' => 'cav', 'Haze_12461' => 'cav', 'Haze_16115' => 'cav', 'Haze_16808' => 'cav', 'Haze_18531' => 'cav', 'Hma1.2p1_0046F.1_g026700' => 'hma', 'Hma1.2p1_0046F.1_g026710' => 'hma', 'Hma1.2p1_0168F.1_g074340' => 'hma', 'Hma1.2p1_0266F.1_g107030' => 'hma', 'Hma1.2p1_0266F.1_g107060' => 'hma', 'Hma1.2p1_0275F.1_g110510' => 'hma', 'Hma1.2p1_0592F.1_g185490' => 'hma', 'Hma1.2p1_0592F.1_g185500' => 'hma', 'Hma1.2p1_0592F.1_g185510' => 'hma', 'Hma1.2p1_0592F.1_g185520' => 'hma', 'Hma1.2p1_0592F.1_g185530' => 'hma', 'Hma1.2p1_0818F.1_g223450' => 'hma', 'HPP92_009708' => 'vpl', 'HPP92_009793' => 'vpl', 'HPP92_009796' => 'vpl', 'HPP92_009797' => 'vpl', 'HPP92_014940' => 'vpl', 'HPP92_014988' => 'vpl', 'Hund02463' => 'sun', 'Hund02760' => 'sun', 'Hund05071' => 'sun', 'Hund10108' => 'sun', 'Hund11204' => 'sun', 'Hund14016' => 'sun', 'Hund16464' => 'sun', 'Lalb_Chr09g0333391' => 'lal', 'Lalb_Chr11g0070461' => 'lal', 'Lalb_Chr12g0201671' => 'lal', 'Lalb_Chr13g0297161' => 'lal', 'Lj1g0002823' => 'lja', 'Lj3C1074T6' => 'lonja', 'Lj4A212T28' => 'lonja', 'Lj4g0005516' => 'lja', 'Lj4g0013705' => 'lja', 'Lj4g0027865' => 'lja', 'Lj5C92G16' => 'lonja', 'Lj5C92T12' => 'lonja', 'Lj7C596T3' => 'lonja', 'Lj9A446G59' => 'lonja', 'Lj9A482G21' => 'lonja', 'Lsat_1_v5_gn_1_28261' => 'lsa', 'Lsat_1_v5_gn_1_28281' => 'lsa', 'Lsat_1_v5_gn_1_32721' => 'lsa', 'Lsat_1_v5_gn_4_151760' => 'lsa', 'Lsat_1_v5_gn_4_2120' => 'lsa', 'Lsat_1_v5_gn_4_75761' => 'lsa', 'Lsat_1_v5_gn_5_10920' => 'lsa', 'Manes.02G099900' => 'mes', 'Manes.11G096200' => 'mes', 'Manes.12G007200' => 'mes', 'Manes.14G048300' => 'mes', 'Manes.17G114700' => 'mes', 'Mapoly0002s0070' => 'mpo', 'Mapoly0029s0099' => 'mpo', 'MBI07_g24742_MAGBIO' => 'mbi', 'MBI10_g27988_MAGBIO' => 'mbi', 'MBI11_g13057_MAGBIO' => 'mbi', 'MD02G1137200' => 'mdo', 'MD06G1137200' => 'mdo', 'MD07G1122300' => 'mdo', 'MD09G1078200' => 'mdo', 'MD13G1123700' => 'mdo', 'MD14G1151900' => 'mdo', 'MD17G1030900' => 'mdo', 'MD17G1068200' => 'mdo', 'MD17G1068600' => 'mdo', 'Medtr3g077540' => 'mtr', 'Medtr4g105530' => 'mtr', 'Medtr8g076580' => 'mtr', 'Medtr8g076590' => 'mtr', 'Medtr8g096410' => 'mtr', 'MELO3C016411.2' => 'cme', 'MELO3C017780.2' => 'cme', 'MELO3C022560.2' => 'cme', 'MELO3C026187.2' => 'cme', 'MELO3C026286.2' => 'cme', 'MELO3C032854.2' => 'cme', 'Migut.H02495' => 'egut', 'Migut.I00561' => 'egut', 'Migut.K01015' => 'egut', 'Migut.K01016' => 'egut', 'Migut.L00743' => 'egut', 'Migut.L00744' => 'egut', 'Migut.L00746' => 'egut', 'Migut.L00798' => 'egut', 'Migut.L00799' => 'egut', 'Migut.N02096' => 'egut', 'MSTRG.11259' => 'ama', 'MSTRG.23142' => 'ama', 'MSTRG.2499' => 'ama', 'Nitab4.5_0000003g0730' => 'nta', 'Nitab4.5_0000137g0020' => 'nta', 'Nitab4.5_0000721g0210' => 'nta', 'Nitab4.5_0000723g0050' => 'nta', 'Nitab4.5_0000913g0070' => 'nta', 'Nitab4.5_0001332g0040' => 'nta', 'Nitab4.5_0001771g0050' => 'nta', 'Nitab4.5_0001918g0050' => 'nta', 'Nitab4.5_0002686g0030' => 'nta', 'Nitab4.5_0003156g0020' => 'nta', 'Nitab4.5_0003383g0040' => 'nta', 'Nitab4.5_0003918g0010' => 'nta', 'Nitab4.5_0006760g0010' => 'nta', 'Nn1g05981' => 'nnu', 'Nn1g06288' => 'nnu', 'Nn3g16371' => 'nnu', 'Nn3g16786' => 'nnu', 'Nn4g22232' => 'nnu', 'Oeu005144.1' => 'oeu', 'Oeu005145.1' => 'oeu', 'Oeu011348.1' => 'oeu', 'Oeu016415.1' => 'oeu', 'Oeu023501.1' => 'oeu', 'Oeu044473.1' => 'oeu', 'Oeu048892.2' => 'oeu', 'Os01g0549200' => 'osa', 'Os02g0469300' => 'osa', 'Os04g0311100' => 'osa', 'Os06g0474900' => 'osa', 'Os10g0181700' => 'osa', 'Os11g0454800' => 'osa', 'Peaxi162Scf00037g00714' => 'pax', 'Peaxi162Scf00084g01217' => 'pax', 'Peaxi162Scf00257g00217' => 'pax', 'Peaxi162Scf00516g00215' => 'pax', 'Peaxi162Scf00689g00123' => 'pax', 'PGR044G2719' => 'pgr', 'PGR083G1360' => 'pgr', 'PGR102G2849' => 'pgr', 'PGR119G2534' => 'pgr', 'PGSC0003DMG400003538' => 'stu', 'PGSC0003DMG400028138' => 'stu', 'PGSC0003DMG400031732' => 'stu', 'PGSC0003DMG400038165' => 'stu', 'Phvul.002G284600' => 'pvu', 'Phvul.003G258200' => 'pvu', 'Phvul.009G176500' => 'pvu', 'Potri.003G167201' => 'ptr', 'Potri.005G118400' => 'ptr', 'Potri.012G089000' => 'ptr', 'Potri.012G102800' => 'ptr', 'Potri.015G079400' => 'ptr', 'Potri.015G100900' => 'ptr', 'Pp3c14_9810' => 'ppa', 'Pp3c15_10450' => 'ppa', 'Pp3c20_19150' => 'ppa', 'Pp3c23_12740' => 'ppa', 'Pp3c23_6310' => 'ppa', 'Pp3c24_3720' => 'ppa', 'Pp3c27_2580' => 'ppa', 'Pp3c9_8990' => 'ppa', 'PRCOL_00002854' => 'pco', 'Prupe.1G221200' => 'ppe', 'Prupe.3G289000' => 'ppe', 'Prupe.5G147000' => 'ppe', 'Prupe.6G157300' => 'ppe', 'Prupe.7G163400' => 'ppe', 'Psat0s2177g0040' => 'psa', 'Psat3g174760' => 'psa', 'Psat3g192160' => 'psa', 'Psat4g058520' => 'psa', 'Psat4g096840' => 'psa', 'Psat7g037320' => 'psa', 'PSO017G1274' => 'pso', 'PSO017G5166' => 'pso', 'PSO063G4558' => 'pso', 'PSO170G4458' => 'pso', 'PSO170G5005' => 'pso', 'PSO210G6156' => 'pso', 'PSO210G6635' => 'pso', 'PSO210G7397' => 'pso', 'PSO210G7700' => 'pso', 'PSO455G0035' => 'pso', 'PSO455G0180' => 'pso', 'PSO478G4515' => 'pso', 'PSO832G1305' => 'pso', 'PSO832G3489' => 'pso', 'QL02p075247' => 'qlo', 'QL03p051148' => 'qlo', 'QL05p010313' => 'qlo', 'QL06p034627' => 'qlo', 'QL10p001889' => 'qlo', 'QL10p010846' => 'qlo', 'RcHm_v2.0_Chr1g0350621' => 'rch', 'RcHm_v2.0_Chr1g0350641' => 'rch', 'RcHm_v2.0_Chr2g0092891' => 'rch', 'RcHm_v2.0_Chr2g0100251' => 'rch', 'RcHm_v2.0_Chr2g0158661' => 'rch', 'RcHm_v2.0_Chr2g0172741' => 'rch', 'RcHm_v2.0_Chr4g0429571' => 'rch', 'RcHm_v2.0_Chr5g0042471' => 'rch', 'RcHm_v2.0_Chr7g0189451' => 'rch', 'Rhsim08G0052000' => 'rsi', 'Rhsim08G0174400' => 'rsi', 'Rhsim08G0193200' => 'rsi', 'Rhsim10G0214800' => 'rsi', 'Rhsim10G0214900' => 'rsi', 'Rhsim10G0215000' => 'rsi', 'Rhsim12G0022900' => 'rsi', 'Rhsim12G0177500' => 'rsi', 'Rhsim12G0177700' => 'rsi', 'Sabra03G0122600' => 'sbr', 'Sabra05G0097400' => 'sbr', 'Sabra12G0064100' => 'sbr', 'Sabra15G0121300' => 'sbr', 'SalBow2G0642' => 'sbo', 'SalBow5G2667' => 'sbo', 'SalBow5G4873' => 'sbo', 'SalBow8G2395' => 'sbo', 'Sc03g0003290' => 'sci', 'Sc10g0010130' => 'sci', 'Sc22g0003650' => 'sci', 'Sed0001603' => 'sed', 'Sed0004259' => 'sed', 'Sed0006789' => 'sed', 'Sed0011838' => 'sed', 'Sed0012964' => 'sed', 'Sed0016383' => 'sed', 'Sed0019010' => 'sed', 'Sed0020188' => 'sed', 'SEGI_04702' => 'sgi', 'SEGI_17231' => 'sgi', 'SEGI_18877' => 'sgi', 'SEGI_25196' => 'sgi', 'SEGI_25515' => 'sgi', 'SEGI_28445' => 'sgi', 'SEGI_37452' => 'sgi', 'SGA_v2.0_scaffold188G40336' => 'sas', 'SGA_v2.0_scaffold228G43247' => 'sas', 'SGA_v2.0_scaffold280G46853' => 'sas', 'SGA_v2.0_scaffold34G13808' => 'sas', 'SGA_v2.0_scaffold40G15576' => 'sas', 'SGA_v2.0_scaffold611G53188' => 'sas', 'SGA_v2.0_scaffold78G25461' => 'sas', 'SGA_v2.0_scaffold90G27888' => 'sas', 'SHI08601' => 'shi', 'SHI08606' => 'shi', 'SHI17117' => 'shi', 'SHI17119' => 'shi', 'SMO118G0201' => 'smo', 'SMO169G0247' => 'smo', 'SMO176G0006' => 'smo', 'SMO176G0015' => 'smo', 'SMO202G0006' => 'smo', 'SMO240G0050' => 'smo', 'SMO286G0009' => 'smo', 'SMO338G0033' => 'smo', 'SMO356G0533' => 'smo', 'SMO364G0382' => 'smo', 'SMO367G0166' => 'smo', 'SMO367G1098' => 'smo', 'Solyc01g009920.3' => 'sly', 'Solyc01g099300.3' => 'sly', 'Solyc02g084700.3' => 'sly', 'Solyc03g097520.3' => 'sly', 'Solyc06g071580.3' => 'sly', 'Solyc10g081760.3' => 'sly', 'Sopen01g005480' => 'spe', 'Sopen01g042850' => 'spe', 'Sopen02g029370' => 'spe', 'Sopen03g028280' => 'spe', 'Sopen06g027870' => 'spe', 'Sopen10g032270' => 'spe', 'Sp5g18180' => 'spa', 'Sp6g12880' => 'spa', 'Sp6g30850' => 'spa', 'Sp7g22960' => 'spa', 'Sp7g34010' => 'spa', 'SpUn1326_0010' => 'spa', 'TAR371G0242' => 'tar', 'TAR622G0638' => 'tar', 'TAR628G1548' => 'tar', 'TAR629G1079' => 'tar', 'TAR629G3413' => 'tar', 'THA.LOC104804249' => 'tha', 'THA.LOC104808315' => 'tha', 'THA.LOC104809238' => 'tha', 'THA.LOC104825484' => 'tha', 'Thecc.01G025500' => 'tca', 'Thecc.03G015800' => 'tca', 'Thecc.03G018000' => 'tca', 'Thecc.03G134800' => 'tca', 'Thecc.04G014700' => 'tca', 'Thhalv10006991m.g' => 'esa', 'Thhalv10012707m.g' => 'esa', 'Thhalv10015739m.g' => 'esa', 'Thhalv10024553m.g' => 'esa', 'Thhalv10024673m.g' => 'esa', 'Thhalv10029187m.g' => 'esa', 'TPR.G12971' => 'tpr', 'TPR.G29396' => 'tpr', 'TPR.G33376' => 'tpr', 'TPR.G35508' => 'tpr', 'TPR.G35516' => 'tpr', 'TPR.G37317' => 'tpr', 'TPR.G37389' => 'tpr', 'TPR.G37523' => 'tpr', 'TPR.G559' => 'tpr', 'TWI14G0070' => 'twi', 'TWI14G0729' => 'twi', 'TWI18G0596' => 'twi', 'TWI39G0780' => 'twi', 'TWI39G0850' => 'twi', 'TWI73G1052' => 'twi', 'unitig_52.g17485' => 'ugi', 'unitig_61.g26355' => 'ugi', 'vmacro01040' => 'vma', 'vmacro16731' => 'vma', 'vmacro18270' => 'vma', 'vmacro19142' => 'vma', 'vmacro19407' => 'vma', 'vmacro19408' => 'vma', 'vmacro21899' => 'vma', 'vmacro21900' => 'vma', 'vmacro21901' => 'vma', 'VMungo0251G0490' => 'vmu', 'VMungo0251G1748' => 'vmu', 'VMungo1309G0421' => 'vmu', 'Zm00001eb086500' => 'zma', 'Zm00001eb150680' => 'zma', 'Zm00001eb162330' => 'zma', 'Zm00001eb203130' => 'zma', 'Zm00001eb369480' => 'zma', 'Zm00001eb382340' => 'zma', 'Zm00001eb416360' => 'zma' ) $gf_id = 'HOM05D000902' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000902' ) $data_identifier = 'HOM05D000902' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 13, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 10, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 6, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 9, 'hma' => (int) 12, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 4, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 6, 'ppa' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 6, 'rch' => (int) 9, 'rsi' => (int) 9, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 12, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 3, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416360' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000902', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '663', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02470' => 'bna', 'A01p16260' => 'bna', 'A02p01680' => 'bna', 'A03p16600' => 'bna', 'A03p55660' => 'bna', 'A03p64160' => 'bna', 'A03p64170' => 'bna', 'A08p31900' => 'bna', 'A09p59530' => 'bna', 'A10p08230' => 'bna', 'A10p25090' => 'bna', 'Aa31LG3G7100' => 'aar', 'Aa31LG3G7110' => 'aar', 'Aa31LG6G13160' => 'aar', 'Aa31LG7G10770' => 'aar', 'Aa31LG7G3830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2723' => 'aag', 'Actinidia08045' => 'ach', 'Actinidia08888' => 'ach', 'Actinidia18333' => 'ach', 'Actinidia19334' => 'ach', 'Actinidia25552' => 'ach', 'Actinidia26089' => 'ach', 'Actinidia30615' => 'ach', 'Actinidia30616' => 'ach', 'Actinidia33083' => 'ach', 'Actinidia35762' => 'ach', 'Ah.02g110620' => 'amhyb', 'Ah.11g046390' => 'amhyb', 'AL1G31670' => 'aly', 'AL6G23730' => 'aly', 'AL7G14740' => 'aly', 'AL7G14750' => 'aly', 'AL7G14760' => 'aly', 'AL7G28220' => 'aly', 'AL8G24940' => 'aly', 'Aqoxy3G01665' => 'aox', 'Aqoxy3G02853' => 'aox', 'Aqoxy5G01513' => 'aox', 'Aqoxy5G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8SKA4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ75LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKDA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0LJZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7REX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZP4YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWX7I5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2QKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS0L9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPCD8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q161UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC7XCF' => 'arhy', 'AT1G19100' => 'ath', 'AT4G24970' => 'ath', 'AT4G36270' => 'ath', 'AT4G36280' => 'ath', 'AT4G36290' => 'ath', 'AT5G13130' => 'ath', 'AT5G50780' => 'ath', 'ATR0582G266' => 'atr', 'ATR0661G195' => 'atr', 'ATR1152G031' => 'atr', 'Atru.chr11.2382' => 'acertr', 'Atru.chr12.2337' => 'acertr', 'Atru.chr3.744' => 'acertr', 'Atru.chr6.1870' => 'acertr', 'Atru.chr9.2515' => 'acertr', 'AUR62004120' => 'cqu', 'AUR62005667' => 'cqu', 'AUR62007634' => 'cqu', 'AUR62008186' => 'cqu', 'AUR62008187' => 'cqu', 'AUR62008188' => 'cqu', 'AUR62027954' => 'cqu', 'AUR62028766' => 'cqu', 'AUR62028767' => 'cqu', 'AUR62028768' => 'cqu', 'AUR62028886' => 'cqu', 'AUR62029563' => 'cqu', 'AUR62038832' => 'cqu', 'BcaB01g04149' => 'bca', 'BcaB03g12940' => 'bca', 'BcaB03g13090' => 'bca', 'BcaB03g14466' => 'bca', 'BcaB05g24035' => 'bca', 'BcaC01g06050' => 'bca', 'BcaC04g19148' => 'bca', 'BcaC04g20761' => 'bca', 'BcaC06g32845' => 'bca', 'BcaC07g41274' => 'bca', 'BcaC09g50827' => 'bca', 'BcaNung00741' => 'bca', 'BcaNung00742' => 'bca', 'BcaNung01859' => 'bca', 'BcaNung03985' => 'bca', 'BcaNung03989' => 'bca', 'BcaNung05661' => 'bca', 'BolC1t00257H' => 'bol', 'BolC1t01956H' => 'bol', 'BolC2t06534H' => 'bol', 'BolC3t14334H' => 'bol', 'BolC5t30451H' => 'bol', 'BolC7t45880H' => 'bol', 'BolC7t46586H' => 'bol', 'BolC8t49301H' => 'bol', 'BolC8t51837H' => 'bol', 'BolC9t56822H' => 'bol', 'BolC9t59235H' => 'bol', 'BraA01t00234Z' => 'bra', 'BraA01t01563Z' => 'bra', 'BraA02t05147Z' => 'bra', 'BraA03t10947Z' => 'bra', 'BraA03t14633Z' => 'bra', 'BraA08t35112Z' => 'bra', 'BraA09t41330Z' => 'bra', 'BraA10t44570Z' => 'bra', 'C01p02670' => 'bna', 'C01p20260' => 'bna', 'C02p05890' => 'bna', 'C03p19530' => 'bna', 'C05p17470' => 'bna', 'C07p53900' => 'bna', 'C07p61630' => 'bna', 'C08p16800' => 'bna', 'C08p42810' => 'bna', 'C09p39480' => 'bna', 'C09p63980' => 'bna', 'CAN.G1001.7' => 'can', 'CAN.G1034.55' => 'can', 'CAN.G143.7' => 'can', 'CAN.G3340.1' => 'can', 'CAN.G358.19' => 'can', 'CAN.G373.2' => 'can', 'CAN.G674.16' => 'can', 'CAN.G674.17' => 'can', 'CAN.G674.18' => 'can', 'CAN.G732.2' => 'can', 'CAN.G732.3' => 'can', 'CAN.G993.39' => 'can', 'CANSAT01G2052' => 'cansat', 'CANSAT80G0070' => 'cansat', 'CANSAT80G0483' => 'cansat', 'CANSAT80G0625' => 'cansat', 'CARHR019690' => 'chi', 'CARHR080280' => 'chi', 'CARHR152750' => 'chi', 'CARHR152760' => 'chi', 'CARHR152770' => 'chi', 'CARHR200340' => 'chi', 'CARHR232370' => 'chi', 'CARHR244670' => 'chi', 'CARHR244680' => 'chi', 'CARHR257520' => 'chi', 'Carub.0001s1872' => 'cru', 'Carub.0006s1130' => 'cru', 'Carub.0007s0396' => 'cru', 'Carub.0007s0397' => 'cru', 'Carub.0007s1608' => 'cru', 'Carub.0008s1068' => 'cru', 'Carub.0008s1077' => 'cru', 'Ca_16158_v3' => 'car', 'Ca_17571_v3' => 'car', 'Ca_21936_v3' => 'car', 'Ca_22350_v3' => 'car', 'CBR_g22445' => 'cbr', 'CBR_g26290' => 'cbr', 'Cc04_g09610' => 'ccan', 'Cc04_g12280' => 'ccan', 'Cc07_g10230' => 'ccan', 'CDE02G0093' => 'cde', 'CDE02G0701' => 'cde', 'CDE04G1050' => 'cde', 'CDE05G1833' => 'cde', 'CDE05G3058' => 'cde', 'CDE05G3380' => 'cde', 'CDE06G0536' => 'cde', 'Cfa006923' => 'cfa', 'Cfa009402' => 'cfa', 'Cfa018751' => 'cfa', 'Cfa019164' => 'cfa', 'Cfa022935' => 'cfa', 'Ciclev10019081m.g' => 'ccl', 'Ciclev10025076m.g' => 'ccl', 'Ciclev10030712m.g' => 'ccl', 'Ciclev10033760m.g' => 'ccl', 'CiPaw.05G105600' => 'cil', 'CiPaw.08G136700' => 'cil', 'CiPaw.11G003900' => 'cil', 'CiPaw.11G023700' => 'cil', 'CiPaw.12G003700' => 'cil', 'ClCG06G017100' => 'cla', 'ClCG06G018110' => 'cla', 'ClCG07G008800' => 'cla', 'ClCG07G015330' => 'cla', 'COL.COLO4_13698' => 'col', 'COL.COLO4_16659' => 'col', 'COL.COLO4_21986' => 'col', 'COL.COLO4_24049' => 'col', 'COL.COLO4_29061' => 'col', 'COL.COLO4_29075' => 'col', 'COL.COLO4_30094' => 'col', 'Cpa.g.c33689' => 'cpa', 'Cpa.g.sc108.39' => 'cpa', 'Cpa.g.sc108.41' => 'cpa', 'Cpa.g.sc1163.1' => 'cpa', 'Cpa.g.sc4.155' => 'cpa', 'Cpa.g.sc6.194' => 'cpa', 'CsaV3_1G000340' => 'csa', 'CsaV3_1G001400' => 'csa', 'CsaV3_4G002220' => 'csa', 'CsaV3_4G005370' => 'csa', 'CSS0007487' => 'camsi', 'CSS0008066' => 'camsi', 'CSS0009120' => 'camsi', 'CSS0015512' => 'camsi', 'CSS0022409' => 'camsi', 'CSS0025358' => 'camsi', 'CSS0044547' => 'camsi', 'DCAR_013057' => 'dca', 'DCAR_015058' => 'dca', 'DCAR_016027' => 'dca', 'DCAR_017327' => 'dca', 'DCAR_020743' => 'dca', 'DCAR_026157' => 'dca', 'DCAR_032339' => 'dca', 'DCAR_032340' => 'dca', 'Dinv11200' => 'din', 'Dinv11201' => 'din', 'Dinv20631' => 'din', 'Dinv23182' => 'din', 'Dinv33466' => 'din', 'Dinv33583' => 'din', 'Dinv38565' => 'din', 'Duzib068G0200' => 'dzi', 'Duzib147G0132' => 'dzi', 'Duzib147G0635' => 'dzi', 'Duzib205G1670' => 'dzi', 'Duzib251G0606' => 'dzi', 'ECA232G3336' => 'eca', 'ECA232G3763' => 'eca', 'ECA232G4845' => 'eca', 'ECA234G1607' => 'eca', 'ECA246G0932' => 'eca', 'ECA247G0781' => 'eca', 'ECA247G1932' => 'eca', 'ECA247G2079' => 'eca', 'ECA247G3338' => 'eca', 'ECA247G4115' => 'eca', 'EL10Ac3g06552' => 'bvu', 'EL10Ac5g10721' => 'bvu', 'EL10Ac5g10722' => 'bvu', 'EL10Ac5g10723' => 'bvu', 'EL10Ac5g11361' => 'bvu', 'EL10Ac6g13553' => 'bvu', 'EL10As8g23872' => 'bvu', 'Eucgr.B00250' => 'egr', 'Eucgr.B00251' => 'egr', 'Eucgr.B03533' => 'egr', 'Eucgr.I02381' => 'egr', 'Eucgr.K02700' => 'egr', 'FAN02G0174' => 'fan', 'FAN02G3146' => 'fan', 'FAN04G1672' => 'fan', 'FAN04G2273' => 'fan', 'FAN05G2791' => 'fan', 'FAN05G4035' => 'fan', 'FAN07G0834' => 'fan', 'FAN08G1198' => 'fan', 'FAN09G4182' => 'fan', 'FAN12G0496' => 'fan', 'FAN13G1027' => 'fan', 'FAN13G2951' => 'fan', 'FAN14G0705' => 'fan', 'FAN14G0720' => 'fan', 'FAN17G0201' => 'fan', 'FAN17G2665' => 'fan', 'FAN18G1456' => 'fan', 'FAN18G1525' => 'fan', 'FAN18G3500' => 'fan', 'FAN28G2670' => 'fan', 'FvH4_1g12391' => 'fve', 'FvH4_4g23220' => 'fve', 'FvH4_5g08810' => 'fve', 'FvH4_5g28960' => 'fve', 'FvH4_6g42820' => 'fve', 'FvH4_6g51110' => 'fve', 'Glyma.02G051802' => 'gma', 'Glyma.04G185300' => 'gma', 'Glyma.05G202900' => 'gma', 'Glyma.08G010300' => 'gma', 'Glyma.16G131900' => 'gma', 'Glyma.17G087900' => 'gma', 'Gohir.A07G048600' => 'ghi', 'Gohir.A11G179000' => 'ghi', 'Gohir.A12G140900' => 'ghi', 'Gohir.A12G140950' => 'ghi', 'Gohir.A12G191700' => 'ghi', 'Gohir.A13G086300' => 'ghi', 'Gohir.D07G052900' => 'ghi', 'Gohir.D11G186600' => 'ghi', 'Gohir.D12G145575' => 'ghi', 'Gohir.D12G145650' => 'ghi', 'Gohir.D12G145725' => 'ghi', 'Gohir.D12G194050' => 'ghi', 'Gohir.D13G091800' => 'ghi', 'Gorai.001G055900' => 'gra', 'Gorai.007G198400' => 'gra', 'Gorai.008G157000' => 'gra', 'Gorai.008G157100' => 'gra', 'Gorai.008G208700' => 'gra', 'Gorai.010G138700' => 'gra', 'GSVIVG01000977001' => 'vvi', 'GSVIVG01007708001' => 'vvi', 'GSVIVG01008587001' => 'vvi', 'GSVIVG01018849001' => 'vvi', 'GSVIVG01032432001' => 'vvi', 'HanXRQChr02g0034131' => 'han', 'HanXRQChr02g0035981' => 'han', 'HanXRQChr02g0035991' => 'han', 'HanXRQChr05g0155611' => 'han', 'HanXRQChr05g0155621' => 'han', 'HanXRQChr08g0236501' => 'han', 'HanXRQChr09g0261321' => 'han', 'HanXRQChr09g0272081' => 'han', 'HanXRQChr10g0310741' => 'han', 'HanXRQChr11g0325591' => 'han', 'HanXRQChr12g0385691' => 'han', 'HanXRQChr13g0387801' => 'han', 'HanXRQChr15g0463011' => 'han', 'Haze_03826' => 'cav', 'Haze_03827' => 'cav', 'Haze_07183' => 'cav', 'Haze_07537' => 'cav', 'Haze_07539' => 'cav', 'Haze_12461' => 'cav', 'Haze_16115' => 'cav', 'Haze_16808' => 'cav', 'Haze_18531' => 'cav', 'Hma1.2p1_0046F.1_g026700' => 'hma', 'Hma1.2p1_0046F.1_g026710' => 'hma', 'Hma1.2p1_0168F.1_g074340' => 'hma', 'Hma1.2p1_0266F.1_g107030' => 'hma', 'Hma1.2p1_0266F.1_g107060' => 'hma', 'Hma1.2p1_0275F.1_g110510' => 'hma', 'Hma1.2p1_0592F.1_g185490' => 'hma', 'Hma1.2p1_0592F.1_g185500' => 'hma', 'Hma1.2p1_0592F.1_g185510' => 'hma', 'Hma1.2p1_0592F.1_g185520' => 'hma', 'Hma1.2p1_0592F.1_g185530' => 'hma', 'Hma1.2p1_0818F.1_g223450' => 'hma', 'HPP92_009708' => 'vpl', 'HPP92_009793' => 'vpl', 'HPP92_009796' => 'vpl', 'HPP92_009797' => 'vpl', 'HPP92_014940' => 'vpl', 'HPP92_014988' => 'vpl', 'Hund02463' => 'sun', 'Hund02760' => 'sun', 'Hund05071' => 'sun', 'Hund10108' => 'sun', 'Hund11204' => 'sun', 'Hund14016' => 'sun', 'Hund16464' => 'sun', 'Lalb_Chr09g0333391' => 'lal', 'Lalb_Chr11g0070461' => 'lal', 'Lalb_Chr12g0201671' => 'lal', 'Lalb_Chr13g0297161' => 'lal', 'Lj1g0002823' => 'lja', 'Lj3C1074T6' => 'lonja', 'Lj4A212T28' => 'lonja', 'Lj4g0005516' => 'lja', 'Lj4g0013705' => 'lja', 'Lj4g0027865' => 'lja', 'Lj5C92G16' => 'lonja', 'Lj5C92T12' => 'lonja', 'Lj7C596T3' => 'lonja', 'Lj9A446G59' => 'lonja', 'Lj9A482G21' => 'lonja', 'Lsat_1_v5_gn_1_28261' => 'lsa', 'Lsat_1_v5_gn_1_28281' => 'lsa', 'Lsat_1_v5_gn_1_32721' => 'lsa', 'Lsat_1_v5_gn_4_151760' => 'lsa', 'Lsat_1_v5_gn_4_2120' => 'lsa', 'Lsat_1_v5_gn_4_75761' => 'lsa', 'Lsat_1_v5_gn_5_10920' => 'lsa', 'Manes.02G099900' => 'mes', 'Manes.11G096200' => 'mes', 'Manes.12G007200' => 'mes', 'Manes.14G048300' => 'mes', 'Manes.17G114700' => 'mes', 'Mapoly0002s0070' => 'mpo', 'Mapoly0029s0099' => 'mpo', 'MBI07_g24742_MAGBIO' => 'mbi', 'MBI10_g27988_MAGBIO' => 'mbi', 'MBI11_g13057_MAGBIO' => 'mbi', 'MD02G1137200' => 'mdo', 'MD06G1137200' => 'mdo', 'MD07G1122300' => 'mdo', 'MD09G1078200' => 'mdo', 'MD13G1123700' => 'mdo', 'MD14G1151900' => 'mdo', 'MD17G1030900' => 'mdo', 'MD17G1068200' => 'mdo', 'MD17G1068600' => 'mdo', 'Medtr3g077540' => 'mtr', 'Medtr4g105530' => 'mtr', 'Medtr8g076580' => 'mtr', 'Medtr8g076590' => 'mtr', 'Medtr8g096410' => 'mtr', 'MELO3C016411.2' => 'cme', 'MELO3C017780.2' => 'cme', 'MELO3C022560.2' => 'cme', 'MELO3C026187.2' => 'cme', 'MELO3C026286.2' => 'cme', 'MELO3C032854.2' => 'cme', 'Migut.H02495' => 'egut', 'Migut.I00561' => 'egut', 'Migut.K01015' => 'egut', 'Migut.K01016' => 'egut', 'Migut.L00743' => 'egut', 'Migut.L00744' => 'egut', 'Migut.L00746' => 'egut', 'Migut.L00798' => 'egut', 'Migut.L00799' => 'egut', 'Migut.N02096' => 'egut', 'MSTRG.11259' => 'ama', 'MSTRG.23142' => 'ama', 'MSTRG.2499' => 'ama', 'Nitab4.5_0000003g0730' => 'nta', 'Nitab4.5_0000137g0020' => 'nta', 'Nitab4.5_0000721g0210' => 'nta', 'Nitab4.5_0000723g0050' => 'nta', 'Nitab4.5_0000913g0070' => 'nta', 'Nitab4.5_0001332g0040' => 'nta', 'Nitab4.5_0001771g0050' => 'nta', 'Nitab4.5_0001918g0050' => 'nta', 'Nitab4.5_0002686g0030' => 'nta', 'Nitab4.5_0003156g0020' => 'nta', 'Nitab4.5_0003383g0040' => 'nta', 'Nitab4.5_0003918g0010' => 'nta', 'Nitab4.5_0006760g0010' => 'nta', 'Nn1g05981' => 'nnu', 'Nn1g06288' => 'nnu', 'Nn3g16371' => 'nnu', 'Nn3g16786' => 'nnu', 'Nn4g22232' => 'nnu', 'Oeu005144.1' => 'oeu', 'Oeu005145.1' => 'oeu', 'Oeu011348.1' => 'oeu', 'Oeu016415.1' => 'oeu', 'Oeu023501.1' => 'oeu', 'Oeu044473.1' => 'oeu', 'Oeu048892.2' => 'oeu', 'Os01g0549200' => 'osa', 'Os02g0469300' => 'osa', 'Os04g0311100' => 'osa', 'Os06g0474900' => 'osa', 'Os10g0181700' => 'osa', 'Os11g0454800' => 'osa', 'Peaxi162Scf00037g00714' => 'pax', 'Peaxi162Scf00084g01217' => 'pax', 'Peaxi162Scf00257g00217' => 'pax', 'Peaxi162Scf00516g00215' => 'pax', 'Peaxi162Scf00689g00123' => 'pax', 'PGR044G2719' => 'pgr', 'PGR083G1360' => 'pgr', 'PGR102G2849' => 'pgr', 'PGR119G2534' => 'pgr', 'PGSC0003DMG400003538' => 'stu', 'PGSC0003DMG400028138' => 'stu', 'PGSC0003DMG400031732' => 'stu', 'PGSC0003DMG400038165' => 'stu', 'Phvul.002G284600' => 'pvu', 'Phvul.003G258200' => 'pvu', 'Phvul.009G176500' => 'pvu', 'Potri.003G167201' => 'ptr', 'Potri.005G118400' => 'ptr', 'Potri.012G089000' => 'ptr', 'Potri.012G102800' => 'ptr', 'Potri.015G079400' => 'ptr', 'Potri.015G100900' => 'ptr', 'Pp3c14_9810' => 'ppa', 'Pp3c15_10450' => 'ppa', 'Pp3c20_19150' => 'ppa', 'Pp3c23_12740' => 'ppa', 'Pp3c23_6310' => 'ppa', 'Pp3c24_3720' => 'ppa', 'Pp3c27_2580' => 'ppa', 'Pp3c9_8990' => 'ppa', 'PRCOL_00002854' => 'pco', 'Prupe.1G221200' => 'ppe', 'Prupe.3G289000' => 'ppe', 'Prupe.5G147000' => 'ppe', 'Prupe.6G157300' => 'ppe', 'Prupe.7G163400' => 'ppe', 'Psat0s2177g0040' => 'psa', 'Psat3g174760' => 'psa', 'Psat3g192160' => 'psa', 'Psat4g058520' => 'psa', 'Psat4g096840' => 'psa', 'Psat7g037320' => 'psa', 'PSO017G1274' => 'pso', 'PSO017G5166' => 'pso', 'PSO063G4558' => 'pso', 'PSO170G4458' => 'pso', 'PSO170G5005' => 'pso', 'PSO210G6156' => 'pso', 'PSO210G6635' => 'pso', 'PSO210G7397' => 'pso', 'PSO210G7700' => 'pso', 'PSO455G0035' => 'pso', 'PSO455G0180' => 'pso', 'PSO478G4515' => 'pso', 'PSO832G1305' => 'pso', 'PSO832G3489' => 'pso', 'QL02p075247' => 'qlo', 'QL03p051148' => 'qlo', 'QL05p010313' => 'qlo', 'QL06p034627' => 'qlo', 'QL10p001889' => 'qlo', 'QL10p010846' => 'qlo', 'RcHm_v2.0_Chr1g0350621' => 'rch', 'RcHm_v2.0_Chr1g0350641' => 'rch', 'RcHm_v2.0_Chr2g0092891' => 'rch', 'RcHm_v2.0_Chr2g0100251' => 'rch', 'RcHm_v2.0_Chr2g0158661' => 'rch', 'RcHm_v2.0_Chr2g0172741' => 'rch', 'RcHm_v2.0_Chr4g0429571' => 'rch', 'RcHm_v2.0_Chr5g0042471' => 'rch', 'RcHm_v2.0_Chr7g0189451' => 'rch', 'Rhsim08G0052000' => 'rsi', 'Rhsim08G0174400' => 'rsi', 'Rhsim08G0193200' => 'rsi', 'Rhsim10G0214800' => 'rsi', 'Rhsim10G0214900' => 'rsi', 'Rhsim10G0215000' => 'rsi', 'Rhsim12G0022900' => 'rsi', 'Rhsim12G0177500' => 'rsi', 'Rhsim12G0177700' => 'rsi', 'Sabra03G0122600' => 'sbr', 'Sabra05G0097400' => 'sbr', 'Sabra12G0064100' => 'sbr', 'Sabra15G0121300' => 'sbr', 'SalBow2G0642' => 'sbo', 'SalBow5G2667' => 'sbo', 'SalBow5G4873' => 'sbo', 'SalBow8G2395' => 'sbo', 'Sc03g0003290' => 'sci', 'Sc10g0010130' => 'sci', 'Sc22g0003650' => 'sci', 'Sed0001603' => 'sed', 'Sed0004259' => 'sed', 'Sed0006789' => 'sed', 'Sed0011838' => 'sed', 'Sed0012964' => 'sed', 'Sed0016383' => 'sed', 'Sed0019010' => 'sed', 'Sed0020188' => 'sed', 'SEGI_04702' => 'sgi', 'SEGI_17231' => 'sgi', 'SEGI_18877' => 'sgi', 'SEGI_25196' => 'sgi', 'SEGI_25515' => 'sgi', 'SEGI_28445' => 'sgi', 'SEGI_37452' => 'sgi', 'SGA_v2.0_scaffold188G40336' => 'sas', 'SGA_v2.0_scaffold228G43247' => 'sas', 'SGA_v2.0_scaffold280G46853' => 'sas', 'SGA_v2.0_scaffold34G13808' => 'sas', 'SGA_v2.0_scaffold40G15576' => 'sas', 'SGA_v2.0_scaffold611G53188' => 'sas', 'SGA_v2.0_scaffold78G25461' => 'sas', 'SGA_v2.0_scaffold90G27888' => 'sas', 'SHI08601' => 'shi', 'SHI08606' => 'shi', 'SHI17117' => 'shi', 'SHI17119' => 'shi', 'SMO118G0201' => 'smo', 'SMO169G0247' => 'smo', 'SMO176G0006' => 'smo', 'SMO176G0015' => 'smo', 'SMO202G0006' => 'smo', 'SMO240G0050' => 'smo', 'SMO286G0009' => 'smo', 'SMO338G0033' => 'smo', 'SMO356G0533' => 'smo', 'SMO364G0382' => 'smo', 'SMO367G0166' => 'smo', 'SMO367G1098' => 'smo', 'Solyc01g009920.3' => 'sly', 'Solyc01g099300.3' => 'sly', 'Solyc02g084700.3' => 'sly', 'Solyc03g097520.3' => 'sly', 'Solyc06g071580.3' => 'sly', 'Solyc10g081760.3' => 'sly', 'Sopen01g005480' => 'spe', 'Sopen01g042850' => 'spe', 'Sopen02g029370' => 'spe', 'Sopen03g028280' => 'spe', 'Sopen06g027870' => 'spe', 'Sopen10g032270' => 'spe', 'Sp5g18180' => 'spa', 'Sp6g12880' => 'spa', 'Sp6g30850' => 'spa', 'Sp7g22960' => 'spa', 'Sp7g34010' => 'spa', 'SpUn1326_0010' => 'spa', 'TAR371G0242' => 'tar', 'TAR622G0638' => 'tar', 'TAR628G1548' => 'tar', 'TAR629G1079' => 'tar', 'TAR629G3413' => 'tar', 'THA.LOC104804249' => 'tha', 'THA.LOC104808315' => 'tha', 'THA.LOC104809238' => 'tha', 'THA.LOC104825484' => 'tha', 'Thecc.01G025500' => 'tca', 'Thecc.03G015800' => 'tca', 'Thecc.03G018000' => 'tca', 'Thecc.03G134800' => 'tca', 'Thecc.04G014700' => 'tca', 'Thhalv10006991m.g' => 'esa', 'Thhalv10012707m.g' => 'esa', 'Thhalv10015739m.g' => 'esa', 'Thhalv10024553m.g' => 'esa', 'Thhalv10024673m.g' => 'esa', 'Thhalv10029187m.g' => 'esa', 'TPR.G12971' => 'tpr', 'TPR.G29396' => 'tpr', 'TPR.G33376' => 'tpr', 'TPR.G35508' => 'tpr', 'TPR.G35516' => 'tpr', 'TPR.G37317' => 'tpr', 'TPR.G37389' => 'tpr', 'TPR.G37523' => 'tpr', 'TPR.G559' => 'tpr', 'TWI14G0070' => 'twi', 'TWI14G0729' => 'twi', 'TWI18G0596' => 'twi', 'TWI39G0780' => 'twi', 'TWI39G0850' => 'twi', 'TWI73G1052' => 'twi', 'unitig_52.g17485' => 'ugi', 'unitig_61.g26355' => 'ugi', 'vmacro01040' => 'vma', 'vmacro16731' => 'vma', 'vmacro18270' => 'vma', 'vmacro19142' => 'vma', 'vmacro19407' => 'vma', 'vmacro19408' => 'vma', 'vmacro21899' => 'vma', 'vmacro21900' => 'vma', 'vmacro21901' => 'vma', 'VMungo0251G0490' => 'vmu', 'VMungo0251G1748' => 'vmu', 'VMungo1309G0421' => 'vmu', 'Zm00001eb086500' => 'zma', 'Zm00001eb150680' => 'zma', 'Zm00001eb162330' => 'zma', 'Zm00001eb203130' => 'zma', 'Zm00001eb369480' => 'zma', 'Zm00001eb382340' => 'zma', 'Zm00001eb416360' => 'zma' ), 'gf_id' => 'HOM05D000902', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000902' ), 'data_identifier' => 'HOM05D000902', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000902', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '663', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02470' => 'bna', 'A01p16260' => 'bna', 'A02p01680' => 'bna', 'A03p16600' => 'bna', 'A03p55660' => 'bna', 'A03p64160' => 'bna', 'A03p64170' => 'bna', 'A08p31900' => 'bna', 'A09p59530' => 'bna', 'A10p08230' => 'bna', 'A10p25090' => 'bna', 'Aa31LG3G7100' => 'aar', 'Aa31LG3G7110' => 'aar', 'Aa31LG6G13160' => 'aar', 'Aa31LG7G10770' => 'aar', 'Aa31LG7G3830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2723' => 'aag', 'Actinidia08045' => 'ach', 'Actinidia08888' => 'ach', 'Actinidia18333' => 'ach', 'Actinidia19334' => 'ach', 'Actinidia25552' => 'ach', 'Actinidia26089' => 'ach', 'Actinidia30615' => 'ach', 'Actinidia30616' => 'ach', 'Actinidia33083' => 'ach', 'Actinidia35762' => 'ach', 'Ah.02g110620' => 'amhyb', 'Ah.11g046390' => 'amhyb', 'AL1G31670' => 'aly', 'AL6G23730' => 'aly', 'AL7G14740' => 'aly', 'AL7G14750' => 'aly', 'AL7G14760' => 'aly', 'AL7G28220' => 'aly', 'AL8G24940' => 'aly', 'Aqoxy3G01665' => 'aox', 'Aqoxy3G02853' => 'aox', 'Aqoxy5G01513' => 'aox', 'Aqoxy5G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8SKA4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ75LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKDA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0LJZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7REX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZP4YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWX7I5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2QKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS0L9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPCD8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q161UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC7XCF' => 'arhy', 'AT1G19100' => 'ath', 'AT4G24970' => 'ath', 'AT4G36270' => 'ath', 'AT4G36280' => 'ath', 'AT4G36290' => 'ath', 'AT5G13130' => 'ath', 'AT5G50780' => 'ath', 'ATR0582G266' => 'atr', 'ATR0661G195' => 'atr', 'ATR1152G031' => 'atr', 'Atru.chr11.2382' => 'acertr', 'Atru.chr12.2337' => 'acertr', 'Atru.chr3.744' => 'acertr', 'Atru.chr6.1870' => 'acertr', 'Atru.chr9.2515' => 'acertr', 'AUR62004120' => 'cqu', 'AUR62005667' => 'cqu', 'AUR62007634' => 'cqu', 'AUR62008186' => 'cqu', 'AUR62008187' => 'cqu', 'AUR62008188' => 'cqu', 'AUR62027954' => 'cqu', 'AUR62028766' => 'cqu', 'AUR62028767' => 'cqu', 'AUR62028768' => 'cqu', 'AUR62028886' => 'cqu', 'AUR62029563' => 'cqu', 'AUR62038832' => 'cqu', 'BcaB01g04149' => 'bca', 'BcaB03g12940' => 'bca', 'BcaB03g13090' => 'bca', 'BcaB03g14466' => 'bca', 'BcaB05g24035' => 'bca', 'BcaC01g06050' => 'bca', 'BcaC04g19148' => 'bca', 'BcaC04g20761' => 'bca', 'BcaC06g32845' => 'bca', 'BcaC07g41274' => 'bca', 'BcaC09g50827' => 'bca', 'BcaNung00741' => 'bca', 'BcaNung00742' => 'bca', 'BcaNung01859' => 'bca', 'BcaNung03985' => 'bca', 'BcaNung03989' => 'bca', 'BcaNung05661' => 'bca', 'BolC1t00257H' => 'bol', 'BolC1t01956H' => 'bol', 'BolC2t06534H' => 'bol', 'BolC3t14334H' => 'bol', 'BolC5t30451H' => 'bol', 'BolC7t45880H' => 'bol', 'BolC7t46586H' => 'bol', 'BolC8t49301H' => 'bol', 'BolC8t51837H' => 'bol', 'BolC9t56822H' => 'bol', 'BolC9t59235H' => 'bol', 'BraA01t00234Z' => 'bra', 'BraA01t01563Z' => 'bra', 'BraA02t05147Z' => 'bra', 'BraA03t10947Z' => 'bra', 'BraA03t14633Z' => 'bra', 'BraA08t35112Z' => 'bra', 'BraA09t41330Z' => 'bra', 'BraA10t44570Z' => 'bra', 'C01p02670' => 'bna', 'C01p20260' => 'bna', 'C02p05890' => 'bna', 'C03p19530' => 'bna', 'C05p17470' => 'bna', 'C07p53900' => 'bna', 'C07p61630' => 'bna', 'C08p16800' => 'bna', 'C08p42810' => 'bna', 'C09p39480' => 'bna', 'C09p63980' => 'bna', 'CAN.G1001.7' => 'can', 'CAN.G1034.55' => 'can', 'CAN.G143.7' => 'can', 'CAN.G3340.1' => 'can', 'CAN.G358.19' => 'can', 'CAN.G373.2' => 'can', 'CAN.G674.16' => 'can', 'CAN.G674.17' => 'can', 'CAN.G674.18' => 'can', 'CAN.G732.2' => 'can', 'CAN.G732.3' => 'can', 'CAN.G993.39' => 'can', 'CANSAT01G2052' => 'cansat', 'CANSAT80G0070' => 'cansat', 'CANSAT80G0483' => 'cansat', 'CANSAT80G0625' => 'cansat', 'CARHR019690' => 'chi', 'CARHR080280' => 'chi', 'CARHR152750' => 'chi', 'CARHR152760' => 'chi', 'CARHR152770' => 'chi', 'CARHR200340' => 'chi', 'CARHR232370' => 'chi', 'CARHR244670' => 'chi', 'CARHR244680' => 'chi', 'CARHR257520' => 'chi', 'Carub.0001s1872' => 'cru', 'Carub.0006s1130' => 'cru', 'Carub.0007s0396' => 'cru', 'Carub.0007s0397' => 'cru', 'Carub.0007s1608' => 'cru', 'Carub.0008s1068' => 'cru', 'Carub.0008s1077' => 'cru', 'Ca_16158_v3' => 'car', 'Ca_17571_v3' => 'car', 'Ca_21936_v3' => 'car', 'Ca_22350_v3' => 'car', 'CBR_g22445' => 'cbr', 'CBR_g26290' => 'cbr', 'Cc04_g09610' => 'ccan', 'Cc04_g12280' => 'ccan', 'Cc07_g10230' => 'ccan', 'CDE02G0093' => 'cde', 'CDE02G0701' => 'cde', 'CDE04G1050' => 'cde', 'CDE05G1833' => 'cde', 'CDE05G3058' => 'cde', 'CDE05G3380' => 'cde', 'CDE06G0536' => 'cde', 'Cfa006923' => 'cfa', 'Cfa009402' => 'cfa', 'Cfa018751' => 'cfa', 'Cfa019164' => 'cfa', 'Cfa022935' => 'cfa', 'Ciclev10019081m.g' => 'ccl', 'Ciclev10025076m.g' => 'ccl', 'Ciclev10030712m.g' => 'ccl', 'Ciclev10033760m.g' => 'ccl', 'CiPaw.05G105600' => 'cil', 'CiPaw.08G136700' => 'cil', 'CiPaw.11G003900' => 'cil', 'CiPaw.11G023700' => 'cil', 'CiPaw.12G003700' => 'cil', 'ClCG06G017100' => 'cla', 'ClCG06G018110' => 'cla', 'ClCG07G008800' => 'cla', 'ClCG07G015330' => 'cla', 'COL.COLO4_13698' => 'col', 'COL.COLO4_16659' => 'col', 'COL.COLO4_21986' => 'col', 'COL.COLO4_24049' => 'col', 'COL.COLO4_29061' => 'col', 'COL.COLO4_29075' => 'col', 'COL.COLO4_30094' => 'col', 'Cpa.g.c33689' => 'cpa', 'Cpa.g.sc108.39' => 'cpa', 'Cpa.g.sc108.41' => 'cpa', 'Cpa.g.sc1163.1' => 'cpa', 'Cpa.g.sc4.155' => 'cpa', 'Cpa.g.sc6.194' => 'cpa', 'CsaV3_1G000340' => 'csa', 'CsaV3_1G001400' => 'csa', 'CsaV3_4G002220' => 'csa', 'CsaV3_4G005370' => 'csa', 'CSS0007487' => 'camsi', 'CSS0008066' => 'camsi', 'CSS0009120' => 'camsi', 'CSS0015512' => 'camsi', 'CSS0022409' => 'camsi', 'CSS0025358' => 'camsi', 'CSS0044547' => 'camsi', 'DCAR_013057' => 'dca', 'DCAR_015058' => 'dca', 'DCAR_016027' => 'dca', 'DCAR_017327' => 'dca', 'DCAR_020743' => 'dca', 'DCAR_026157' => 'dca', 'DCAR_032339' => 'dca', 'DCAR_032340' => 'dca', 'Dinv11200' => 'din', 'Dinv11201' => 'din', 'Dinv20631' => 'din', 'Dinv23182' => 'din', 'Dinv33466' => 'din', 'Dinv33583' => 'din', 'Dinv38565' => 'din', 'Duzib068G0200' => 'dzi', 'Duzib147G0132' => 'dzi', 'Duzib147G0635' => 'dzi', 'Duzib205G1670' => 'dzi', 'Duzib251G0606' => 'dzi', 'ECA232G3336' => 'eca', 'ECA232G3763' => 'eca', 'ECA232G4845' => 'eca', 'ECA234G1607' => 'eca', 'ECA246G0932' => 'eca', 'ECA247G0781' => 'eca', 'ECA247G1932' => 'eca', 'ECA247G2079' => 'eca', 'ECA247G3338' => 'eca', 'ECA247G4115' => 'eca', 'EL10Ac3g06552' => 'bvu', 'EL10Ac5g10721' => 'bvu', 'EL10Ac5g10722' => 'bvu', 'EL10Ac5g10723' => 'bvu', 'EL10Ac5g11361' => 'bvu', 'EL10Ac6g13553' => 'bvu', 'EL10As8g23872' => 'bvu', 'Eucgr.B00250' => 'egr', 'Eucgr.B00251' => 'egr', 'Eucgr.B03533' => 'egr', 'Eucgr.I02381' => 'egr', 'Eucgr.K02700' => 'egr', 'FAN02G0174' => 'fan', 'FAN02G3146' => 'fan', 'FAN04G1672' => 'fan', 'FAN04G2273' => 'fan', 'FAN05G2791' => 'fan', 'FAN05G4035' => 'fan', 'FAN07G0834' => 'fan', 'FAN08G1198' => 'fan', 'FAN09G4182' => 'fan', 'FAN12G0496' => 'fan', 'FAN13G1027' => 'fan', 'FAN13G2951' => 'fan', 'FAN14G0705' => 'fan', 'FAN14G0720' => 'fan', 'FAN17G0201' => 'fan', 'FAN17G2665' => 'fan', 'FAN18G1456' => 'fan', 'FAN18G1525' => 'fan', 'FAN18G3500' => 'fan', 'FAN28G2670' => 'fan', 'FvH4_1g12391' => 'fve', 'FvH4_4g23220' => 'fve', 'FvH4_5g08810' => 'fve', 'FvH4_5g28960' => 'fve', 'FvH4_6g42820' => 'fve', 'FvH4_6g51110' => 'fve', 'Glyma.02G051802' => 'gma', 'Glyma.04G185300' => 'gma', 'Glyma.05G202900' => 'gma', 'Glyma.08G010300' => 'gma', 'Glyma.16G131900' => 'gma', 'Glyma.17G087900' => 'gma', 'Gohir.A07G048600' => 'ghi', 'Gohir.A11G179000' => 'ghi', 'Gohir.A12G140900' => 'ghi', 'Gohir.A12G140950' => 'ghi', 'Gohir.A12G191700' => 'ghi', 'Gohir.A13G086300' => 'ghi', 'Gohir.D07G052900' => 'ghi', 'Gohir.D11G186600' => 'ghi', 'Gohir.D12G145575' => 'ghi', 'Gohir.D12G145650' => 'ghi', 'Gohir.D12G145725' => 'ghi', 'Gohir.D12G194050' => 'ghi', 'Gohir.D13G091800' => 'ghi', 'Gorai.001G055900' => 'gra', 'Gorai.007G198400' => 'gra', 'Gorai.008G157000' => 'gra', 'Gorai.008G157100' => 'gra', 'Gorai.008G208700' => 'gra', 'Gorai.010G138700' => 'gra', 'GSVIVG01000977001' => 'vvi', 'GSVIVG01007708001' => 'vvi', 'GSVIVG01008587001' => 'vvi', 'GSVIVG01018849001' => 'vvi', 'GSVIVG01032432001' => 'vvi', 'HanXRQChr02g0034131' => 'han', 'HanXRQChr02g0035981' => 'han', 'HanXRQChr02g0035991' => 'han', 'HanXRQChr05g0155611' => 'han', 'HanXRQChr05g0155621' => 'han', 'HanXRQChr08g0236501' => 'han', 'HanXRQChr09g0261321' => 'han', 'HanXRQChr09g0272081' => 'han', 'HanXRQChr10g0310741' => 'han', 'HanXRQChr11g0325591' => 'han', 'HanXRQChr12g0385691' => 'han', 'HanXRQChr13g0387801' => 'han', 'HanXRQChr15g0463011' => 'han', 'Haze_03826' => 'cav', 'Haze_03827' => 'cav', 'Haze_07183' => 'cav', 'Haze_07537' => 'cav', 'Haze_07539' => 'cav', 'Haze_12461' => 'cav', 'Haze_16115' => 'cav', 'Haze_16808' => 'cav', 'Haze_18531' => 'cav', 'Hma1.2p1_0046F.1_g026700' => 'hma', 'Hma1.2p1_0046F.1_g026710' => 'hma', 'Hma1.2p1_0168F.1_g074340' => 'hma', 'Hma1.2p1_0266F.1_g107030' => 'hma', 'Hma1.2p1_0266F.1_g107060' => 'hma', 'Hma1.2p1_0275F.1_g110510' => 'hma', 'Hma1.2p1_0592F.1_g185490' => 'hma', 'Hma1.2p1_0592F.1_g185500' => 'hma', 'Hma1.2p1_0592F.1_g185510' => 'hma', 'Hma1.2p1_0592F.1_g185520' => 'hma', 'Hma1.2p1_0592F.1_g185530' => 'hma', 'Hma1.2p1_0818F.1_g223450' => 'hma', 'HPP92_009708' => 'vpl', 'HPP92_009793' => 'vpl', 'HPP92_009796' => 'vpl', 'HPP92_009797' => 'vpl', 'HPP92_014940' => 'vpl', 'HPP92_014988' => 'vpl', 'Hund02463' => 'sun', 'Hund02760' => 'sun', 'Hund05071' => 'sun', 'Hund10108' => 'sun', 'Hund11204' => 'sun', 'Hund14016' => 'sun', 'Hund16464' => 'sun', 'Lalb_Chr09g0333391' => 'lal', 'Lalb_Chr11g0070461' => 'lal', 'Lalb_Chr12g0201671' => 'lal', 'Lalb_Chr13g0297161' => 'lal', 'Lj1g0002823' => 'lja', 'Lj3C1074T6' => 'lonja', 'Lj4A212T28' => 'lonja', 'Lj4g0005516' => 'lja', 'Lj4g0013705' => 'lja', 'Lj4g0027865' => 'lja', 'Lj5C92G16' => 'lonja', 'Lj5C92T12' => 'lonja', 'Lj7C596T3' => 'lonja', 'Lj9A446G59' => 'lonja', 'Lj9A482G21' => 'lonja', 'Lsat_1_v5_gn_1_28261' => 'lsa', 'Lsat_1_v5_gn_1_28281' => 'lsa', 'Lsat_1_v5_gn_1_32721' => 'lsa', 'Lsat_1_v5_gn_4_151760' => 'lsa', 'Lsat_1_v5_gn_4_2120' => 'lsa', 'Lsat_1_v5_gn_4_75761' => 'lsa', 'Lsat_1_v5_gn_5_10920' => 'lsa', 'Manes.02G099900' => 'mes', 'Manes.11G096200' => 'mes', 'Manes.12G007200' => 'mes', 'Manes.14G048300' => 'mes', 'Manes.17G114700' => 'mes', 'Mapoly0002s0070' => 'mpo', 'Mapoly0029s0099' => 'mpo', 'MBI07_g24742_MAGBIO' => 'mbi', 'MBI10_g27988_MAGBIO' => 'mbi', 'MBI11_g13057_MAGBIO' => 'mbi', 'MD02G1137200' => 'mdo', 'MD06G1137200' => 'mdo', 'MD07G1122300' => 'mdo', 'MD09G1078200' => 'mdo', 'MD13G1123700' => 'mdo', 'MD14G1151900' => 'mdo', 'MD17G1030900' => 'mdo', 'MD17G1068200' => 'mdo', 'MD17G1068600' => 'mdo', 'Medtr3g077540' => 'mtr', 'Medtr4g105530' => 'mtr', 'Medtr8g076580' => 'mtr', 'Medtr8g076590' => 'mtr', 'Medtr8g096410' => 'mtr', 'MELO3C016411.2' => 'cme', 'MELO3C017780.2' => 'cme', 'MELO3C022560.2' => 'cme', 'MELO3C026187.2' => 'cme', 'MELO3C026286.2' => 'cme', 'MELO3C032854.2' => 'cme', 'Migut.H02495' => 'egut', 'Migut.I00561' => 'egut', 'Migut.K01015' => 'egut', 'Migut.K01016' => 'egut', 'Migut.L00743' => 'egut', 'Migut.L00744' => 'egut', 'Migut.L00746' => 'egut', 'Migut.L00798' => 'egut', 'Migut.L00799' => 'egut', 'Migut.N02096' => 'egut', 'MSTRG.11259' => 'ama', 'MSTRG.23142' => 'ama', 'MSTRG.2499' => 'ama', 'Nitab4.5_0000003g0730' => 'nta', 'Nitab4.5_0000137g0020' => 'nta', 'Nitab4.5_0000721g0210' => 'nta', 'Nitab4.5_0000723g0050' => 'nta', 'Nitab4.5_0000913g0070' => 'nta', 'Nitab4.5_0001332g0040' => 'nta', 'Nitab4.5_0001771g0050' => 'nta', 'Nitab4.5_0001918g0050' => 'nta', 'Nitab4.5_0002686g0030' => 'nta', 'Nitab4.5_0003156g0020' => 'nta', 'Nitab4.5_0003383g0040' => 'nta', 'Nitab4.5_0003918g0010' => 'nta', 'Nitab4.5_0006760g0010' => 'nta', 'Nn1g05981' => 'nnu', 'Nn1g06288' => 'nnu', 'Nn3g16371' => 'nnu', 'Nn3g16786' => 'nnu', 'Nn4g22232' => 'nnu', 'Oeu005144.1' => 'oeu', 'Oeu005145.1' => 'oeu', 'Oeu011348.1' => 'oeu', 'Oeu016415.1' => 'oeu', 'Oeu023501.1' => 'oeu', 'Oeu044473.1' => 'oeu', 'Oeu048892.2' => 'oeu', 'Os01g0549200' => 'osa', 'Os02g0469300' => 'osa', 'Os04g0311100' => 'osa', 'Os06g0474900' => 'osa', 'Os10g0181700' => 'osa', 'Os11g0454800' => 'osa', 'Peaxi162Scf00037g00714' => 'pax', 'Peaxi162Scf00084g01217' => 'pax', 'Peaxi162Scf00257g00217' => 'pax', 'Peaxi162Scf00516g00215' => 'pax', 'Peaxi162Scf00689g00123' => 'pax', 'PGR044G2719' => 'pgr', 'PGR083G1360' => 'pgr', 'PGR102G2849' => 'pgr', 'PGR119G2534' => 'pgr', 'PGSC0003DMG400003538' => 'stu', 'PGSC0003DMG400028138' => 'stu', 'PGSC0003DMG400031732' => 'stu', 'PGSC0003DMG400038165' => 'stu', 'Phvul.002G284600' => 'pvu', 'Phvul.003G258200' => 'pvu', 'Phvul.009G176500' => 'pvu', 'Potri.003G167201' => 'ptr', 'Potri.005G118400' => 'ptr', 'Potri.012G089000' => 'ptr', 'Potri.012G102800' => 'ptr', 'Potri.015G079400' => 'ptr', 'Potri.015G100900' => 'ptr', 'Pp3c14_9810' => 'ppa', 'Pp3c15_10450' => 'ppa', 'Pp3c20_19150' => 'ppa', 'Pp3c23_12740' => 'ppa', 'Pp3c23_6310' => 'ppa', 'Pp3c24_3720' => 'ppa', 'Pp3c27_2580' => 'ppa', 'Pp3c9_8990' => 'ppa', 'PRCOL_00002854' => 'pco', 'Prupe.1G221200' => 'ppe', 'Prupe.3G289000' => 'ppe', 'Prupe.5G147000' => 'ppe', 'Prupe.6G157300' => 'ppe', 'Prupe.7G163400' => 'ppe', 'Psat0s2177g0040' => 'psa', 'Psat3g174760' => 'psa', 'Psat3g192160' => 'psa', 'Psat4g058520' => 'psa', 'Psat4g096840' => 'psa', 'Psat7g037320' => 'psa', 'PSO017G1274' => 'pso', 'PSO017G5166' => 'pso', 'PSO063G4558' => 'pso', 'PSO170G4458' => 'pso', 'PSO170G5005' => 'pso', 'PSO210G6156' => 'pso', 'PSO210G6635' => 'pso', 'PSO210G7397' => 'pso', 'PSO210G7700' => 'pso', 'PSO455G0035' => 'pso', 'PSO455G0180' => 'pso', 'PSO478G4515' => 'pso', 'PSO832G1305' => 'pso', 'PSO832G3489' => 'pso', 'QL02p075247' => 'qlo', 'QL03p051148' => 'qlo', 'QL05p010313' => 'qlo', 'QL06p034627' => 'qlo', 'QL10p001889' => 'qlo', 'QL10p010846' => 'qlo', 'RcHm_v2.0_Chr1g0350621' => 'rch', 'RcHm_v2.0_Chr1g0350641' => 'rch', 'RcHm_v2.0_Chr2g0092891' => 'rch', 'RcHm_v2.0_Chr2g0100251' => 'rch', 'RcHm_v2.0_Chr2g0158661' => 'rch', 'RcHm_v2.0_Chr2g0172741' => 'rch', 'RcHm_v2.0_Chr4g0429571' => 'rch', 'RcHm_v2.0_Chr5g0042471' => 'rch', 'RcHm_v2.0_Chr7g0189451' => 'rch', 'Rhsim08G0052000' => 'rsi', 'Rhsim08G0174400' => 'rsi', 'Rhsim08G0193200' => 'rsi', 'Rhsim10G0214800' => 'rsi', 'Rhsim10G0214900' => 'rsi', 'Rhsim10G0215000' => 'rsi', 'Rhsim12G0022900' => 'rsi', 'Rhsim12G0177500' => 'rsi', 'Rhsim12G0177700' => 'rsi', 'Sabra03G0122600' => 'sbr', 'Sabra05G0097400' => 'sbr', 'Sabra12G0064100' => 'sbr', 'Sabra15G0121300' => 'sbr', 'SalBow2G0642' => 'sbo', 'SalBow5G2667' => 'sbo', 'SalBow5G4873' => 'sbo', 'SalBow8G2395' => 'sbo', 'Sc03g0003290' => 'sci', 'Sc10g0010130' => 'sci', 'Sc22g0003650' => 'sci', 'Sed0001603' => 'sed', 'Sed0004259' => 'sed', 'Sed0006789' => 'sed', 'Sed0011838' => 'sed', 'Sed0012964' => 'sed', 'Sed0016383' => 'sed', 'Sed0019010' => 'sed', 'Sed0020188' => 'sed', 'SEGI_04702' => 'sgi', 'SEGI_17231' => 'sgi', 'SEGI_18877' => 'sgi', 'SEGI_25196' => 'sgi', 'SEGI_25515' => 'sgi', 'SEGI_28445' => 'sgi', 'SEGI_37452' => 'sgi', 'SGA_v2.0_scaffold188G40336' => 'sas', 'SGA_v2.0_scaffold228G43247' => 'sas', 'SGA_v2.0_scaffold280G46853' => 'sas', 'SGA_v2.0_scaffold34G13808' => 'sas', 'SGA_v2.0_scaffold40G15576' => 'sas', 'SGA_v2.0_scaffold611G53188' => 'sas', 'SGA_v2.0_scaffold78G25461' => 'sas', 'SGA_v2.0_scaffold90G27888' => 'sas', 'SHI08601' => 'shi', 'SHI08606' => 'shi', 'SHI17117' => 'shi', 'SHI17119' => 'shi', 'SMO118G0201' => 'smo', 'SMO169G0247' => 'smo', 'SMO176G0006' => 'smo', 'SMO176G0015' => 'smo', 'SMO202G0006' => 'smo', 'SMO240G0050' => 'smo', 'SMO286G0009' => 'smo', 'SMO338G0033' => 'smo', 'SMO356G0533' => 'smo', 'SMO364G0382' => 'smo', 'SMO367G0166' => 'smo', 'SMO367G1098' => 'smo', 'Solyc01g009920.3' => 'sly', 'Solyc01g099300.3' => 'sly', 'Solyc02g084700.3' => 'sly', 'Solyc03g097520.3' => 'sly', 'Solyc06g071580.3' => 'sly', 'Solyc10g081760.3' => 'sly', 'Sopen01g005480' => 'spe', 'Sopen01g042850' => 'spe', 'Sopen02g029370' => 'spe', 'Sopen03g028280' => 'spe', 'Sopen06g027870' => 'spe', 'Sopen10g032270' => 'spe', 'Sp5g18180' => 'spa', 'Sp6g12880' => 'spa', 'Sp6g30850' => 'spa', 'Sp7g22960' => 'spa', 'Sp7g34010' => 'spa', 'SpUn1326_0010' => 'spa', 'TAR371G0242' => 'tar', 'TAR622G0638' => 'tar', 'TAR628G1548' => 'tar', 'TAR629G1079' => 'tar', 'TAR629G3413' => 'tar', 'THA.LOC104804249' => 'tha', 'THA.LOC104808315' => 'tha', 'THA.LOC104809238' => 'tha', 'THA.LOC104825484' => 'tha', 'Thecc.01G025500' => 'tca', 'Thecc.03G015800' => 'tca', 'Thecc.03G018000' => 'tca', 'Thecc.03G134800' => 'tca', 'Thecc.04G014700' => 'tca', 'Thhalv10006991m.g' => 'esa', 'Thhalv10012707m.g' => 'esa', 'Thhalv10015739m.g' => 'esa', 'Thhalv10024553m.g' => 'esa', 'Thhalv10024673m.g' => 'esa', 'Thhalv10029187m.g' => 'esa', 'TPR.G12971' => 'tpr', 'TPR.G29396' => 'tpr', 'TPR.G33376' => 'tpr', 'TPR.G35508' => 'tpr', 'TPR.G35516' => 'tpr', 'TPR.G37317' => 'tpr', 'TPR.G37389' => 'tpr', 'TPR.G37523' => 'tpr', 'TPR.G559' => 'tpr', 'TWI14G0070' => 'twi', 'TWI14G0729' => 'twi', 'TWI18G0596' => 'twi', 'TWI39G0780' => 'twi', 'TWI39G0850' => 'twi', 'TWI73G1052' => 'twi', 'unitig_52.g17485' => 'ugi', 'unitig_61.g26355' => 'ugi', 'vmacro01040' => 'vma', 'vmacro16731' => 'vma', 'vmacro18270' => 'vma', 'vmacro19142' => 'vma', 'vmacro19407' => 'vma', 'vmacro19408' => 'vma', 'vmacro21899' => 'vma', 'vmacro21900' => 'vma', 'vmacro21901' => 'vma', 'VMungo0251G0490' => 'vmu', 'VMungo0251G1748' => 'vmu', 'VMungo1309G0421' => 'vmu', 'Zm00001eb086500' => 'zma', 'Zm00001eb150680' => 'zma', 'Zm00001eb162330' => 'zma', 'Zm00001eb203130' => 'zma', 'Zm00001eb369480' => 'zma', 'Zm00001eb382340' => 'zma', 'Zm00001eb416360' => 'zma' ) $gf_id = 'HOM05D000902' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000902' ) $data_identifier = 'HOM05D000902' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 13, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 10, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 6, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 9, 'hma' => (int) 12, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 4, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 6, 'ppa' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 6, 'rch' => (int) 9, 'rsi' => (int) 9, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 12, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 3, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416360' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000902', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '663', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02470' => 'bna', 'A01p16260' => 'bna', 'A02p01680' => 'bna', 'A03p16600' => 'bna', 'A03p55660' => 'bna', 'A03p64160' => 'bna', 'A03p64170' => 'bna', 'A08p31900' => 'bna', 'A09p59530' => 'bna', 'A10p08230' => 'bna', 'A10p25090' => 'bna', 'Aa31LG3G7100' => 'aar', 'Aa31LG3G7110' => 'aar', 'Aa31LG6G13160' => 'aar', 'Aa31LG7G10770' => 'aar', 'Aa31LG7G3830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2723' => 'aag', 'Actinidia08045' => 'ach', 'Actinidia08888' => 'ach', 'Actinidia18333' => 'ach', 'Actinidia19334' => 'ach', 'Actinidia25552' => 'ach', 'Actinidia26089' => 'ach', 'Actinidia30615' => 'ach', 'Actinidia30616' => 'ach', 'Actinidia33083' => 'ach', 'Actinidia35762' => 'ach', 'Ah.02g110620' => 'amhyb', 'Ah.11g046390' => 'amhyb', 'AL1G31670' => 'aly', 'AL6G23730' => 'aly', 'AL7G14740' => 'aly', 'AL7G14750' => 'aly', 'AL7G14760' => 'aly', 'AL7G28220' => 'aly', 'AL8G24940' => 'aly', 'Aqoxy3G01665' => 'aox', 'Aqoxy3G02853' => 'aox', 'Aqoxy5G01513' => 'aox', 'Aqoxy5G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8SKA4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ75LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKDA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0LJZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7REX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZP4YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWX7I5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2QKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS0L9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPCD8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q161UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC7XCF' => 'arhy', 'AT1G19100' => 'ath', 'AT4G24970' => 'ath', 'AT4G36270' => 'ath', 'AT4G36280' => 'ath', 'AT4G36290' => 'ath', 'AT5G13130' => 'ath', 'AT5G50780' => 'ath', 'ATR0582G266' => 'atr', 'ATR0661G195' => 'atr', 'ATR1152G031' => 'atr', 'Atru.chr11.2382' => 'acertr', 'Atru.chr12.2337' => 'acertr', 'Atru.chr3.744' => 'acertr', 'Atru.chr6.1870' => 'acertr', 'Atru.chr9.2515' => 'acertr', 'AUR62004120' => 'cqu', 'AUR62005667' => 'cqu', 'AUR62007634' => 'cqu', 'AUR62008186' => 'cqu', 'AUR62008187' => 'cqu', 'AUR62008188' => 'cqu', 'AUR62027954' => 'cqu', 'AUR62028766' => 'cqu', 'AUR62028767' => 'cqu', 'AUR62028768' => 'cqu', 'AUR62028886' => 'cqu', 'AUR62029563' => 'cqu', 'AUR62038832' => 'cqu', 'BcaB01g04149' => 'bca', 'BcaB03g12940' => 'bca', 'BcaB03g13090' => 'bca', 'BcaB03g14466' => 'bca', 'BcaB05g24035' => 'bca', 'BcaC01g06050' => 'bca', 'BcaC04g19148' => 'bca', 'BcaC04g20761' => 'bca', 'BcaC06g32845' => 'bca', 'BcaC07g41274' => 'bca', 'BcaC09g50827' => 'bca', 'BcaNung00741' => 'bca', 'BcaNung00742' => 'bca', 'BcaNung01859' => 'bca', 'BcaNung03985' => 'bca', 'BcaNung03989' => 'bca', 'BcaNung05661' => 'bca', 'BolC1t00257H' => 'bol', 'BolC1t01956H' => 'bol', 'BolC2t06534H' => 'bol', 'BolC3t14334H' => 'bol', 'BolC5t30451H' => 'bol', 'BolC7t45880H' => 'bol', 'BolC7t46586H' => 'bol', 'BolC8t49301H' => 'bol', 'BolC8t51837H' => 'bol', 'BolC9t56822H' => 'bol', 'BolC9t59235H' => 'bol', 'BraA01t00234Z' => 'bra', 'BraA01t01563Z' => 'bra', 'BraA02t05147Z' => 'bra', 'BraA03t10947Z' => 'bra', 'BraA03t14633Z' => 'bra', 'BraA08t35112Z' => 'bra', 'BraA09t41330Z' => 'bra', 'BraA10t44570Z' => 'bra', 'C01p02670' => 'bna', 'C01p20260' => 'bna', 'C02p05890' => 'bna', 'C03p19530' => 'bna', 'C05p17470' => 'bna', 'C07p53900' => 'bna', 'C07p61630' => 'bna', 'C08p16800' => 'bna', 'C08p42810' => 'bna', 'C09p39480' => 'bna', 'C09p63980' => 'bna', 'CAN.G1001.7' => 'can', 'CAN.G1034.55' => 'can', 'CAN.G143.7' => 'can', 'CAN.G3340.1' => 'can', 'CAN.G358.19' => 'can', 'CAN.G373.2' => 'can', 'CAN.G674.16' => 'can', 'CAN.G674.17' => 'can', 'CAN.G674.18' => 'can', 'CAN.G732.2' => 'can', 'CAN.G732.3' => 'can', 'CAN.G993.39' => 'can', 'CANSAT01G2052' => 'cansat', 'CANSAT80G0070' => 'cansat', 'CANSAT80G0483' => 'cansat', 'CANSAT80G0625' => 'cansat', 'CARHR019690' => 'chi', 'CARHR080280' => 'chi', 'CARHR152750' => 'chi', 'CARHR152760' => 'chi', 'CARHR152770' => 'chi', 'CARHR200340' => 'chi', 'CARHR232370' => 'chi', 'CARHR244670' => 'chi', 'CARHR244680' => 'chi', 'CARHR257520' => 'chi', 'Carub.0001s1872' => 'cru', 'Carub.0006s1130' => 'cru', 'Carub.0007s0396' => 'cru', 'Carub.0007s0397' => 'cru', 'Carub.0007s1608' => 'cru', 'Carub.0008s1068' => 'cru', 'Carub.0008s1077' => 'cru', 'Ca_16158_v3' => 'car', 'Ca_17571_v3' => 'car', 'Ca_21936_v3' => 'car', 'Ca_22350_v3' => 'car', 'CBR_g22445' => 'cbr', 'CBR_g26290' => 'cbr', 'Cc04_g09610' => 'ccan', 'Cc04_g12280' => 'ccan', 'Cc07_g10230' => 'ccan', 'CDE02G0093' => 'cde', 'CDE02G0701' => 'cde', 'CDE04G1050' => 'cde', 'CDE05G1833' => 'cde', 'CDE05G3058' => 'cde', 'CDE05G3380' => 'cde', 'CDE06G0536' => 'cde', 'Cfa006923' => 'cfa', 'Cfa009402' => 'cfa', 'Cfa018751' => 'cfa', 'Cfa019164' => 'cfa', 'Cfa022935' => 'cfa', 'Ciclev10019081m.g' => 'ccl', 'Ciclev10025076m.g' => 'ccl', 'Ciclev10030712m.g' => 'ccl', 'Ciclev10033760m.g' => 'ccl', 'CiPaw.05G105600' => 'cil', 'CiPaw.08G136700' => 'cil', 'CiPaw.11G003900' => 'cil', 'CiPaw.11G023700' => 'cil', 'CiPaw.12G003700' => 'cil', 'ClCG06G017100' => 'cla', 'ClCG06G018110' => 'cla', 'ClCG07G008800' => 'cla', 'ClCG07G015330' => 'cla', 'COL.COLO4_13698' => 'col', 'COL.COLO4_16659' => 'col', 'COL.COLO4_21986' => 'col', 'COL.COLO4_24049' => 'col', 'COL.COLO4_29061' => 'col', 'COL.COLO4_29075' => 'col', 'COL.COLO4_30094' => 'col', 'Cpa.g.c33689' => 'cpa', 'Cpa.g.sc108.39' => 'cpa', 'Cpa.g.sc108.41' => 'cpa', 'Cpa.g.sc1163.1' => 'cpa', 'Cpa.g.sc4.155' => 'cpa', 'Cpa.g.sc6.194' => 'cpa', 'CsaV3_1G000340' => 'csa', 'CsaV3_1G001400' => 'csa', 'CsaV3_4G002220' => 'csa', 'CsaV3_4G005370' => 'csa', 'CSS0007487' => 'camsi', 'CSS0008066' => 'camsi', 'CSS0009120' => 'camsi', 'CSS0015512' => 'camsi', 'CSS0022409' => 'camsi', 'CSS0025358' => 'camsi', 'CSS0044547' => 'camsi', 'DCAR_013057' => 'dca', 'DCAR_015058' => 'dca', 'DCAR_016027' => 'dca', 'DCAR_017327' => 'dca', 'DCAR_020743' => 'dca', 'DCAR_026157' => 'dca', 'DCAR_032339' => 'dca', 'DCAR_032340' => 'dca', 'Dinv11200' => 'din', 'Dinv11201' => 'din', 'Dinv20631' => 'din', 'Dinv23182' => 'din', 'Dinv33466' => 'din', 'Dinv33583' => 'din', 'Dinv38565' => 'din', 'Duzib068G0200' => 'dzi', 'Duzib147G0132' => 'dzi', 'Duzib147G0635' => 'dzi', 'Duzib205G1670' => 'dzi', 'Duzib251G0606' => 'dzi', 'ECA232G3336' => 'eca', 'ECA232G3763' => 'eca', 'ECA232G4845' => 'eca', 'ECA234G1607' => 'eca', 'ECA246G0932' => 'eca', 'ECA247G0781' => 'eca', 'ECA247G1932' => 'eca', 'ECA247G2079' => 'eca', 'ECA247G3338' => 'eca', 'ECA247G4115' => 'eca', 'EL10Ac3g06552' => 'bvu', 'EL10Ac5g10721' => 'bvu', 'EL10Ac5g10722' => 'bvu', 'EL10Ac5g10723' => 'bvu', 'EL10Ac5g11361' => 'bvu', 'EL10Ac6g13553' => 'bvu', 'EL10As8g23872' => 'bvu', 'Eucgr.B00250' => 'egr', 'Eucgr.B00251' => 'egr', 'Eucgr.B03533' => 'egr', 'Eucgr.I02381' => 'egr', 'Eucgr.K02700' => 'egr', 'FAN02G0174' => 'fan', 'FAN02G3146' => 'fan', 'FAN04G1672' => 'fan', 'FAN04G2273' => 'fan', 'FAN05G2791' => 'fan', 'FAN05G4035' => 'fan', 'FAN07G0834' => 'fan', 'FAN08G1198' => 'fan', 'FAN09G4182' => 'fan', 'FAN12G0496' => 'fan', 'FAN13G1027' => 'fan', 'FAN13G2951' => 'fan', 'FAN14G0705' => 'fan', 'FAN14G0720' => 'fan', 'FAN17G0201' => 'fan', 'FAN17G2665' => 'fan', 'FAN18G1456' => 'fan', 'FAN18G1525' => 'fan', 'FAN18G3500' => 'fan', 'FAN28G2670' => 'fan', 'FvH4_1g12391' => 'fve', 'FvH4_4g23220' => 'fve', 'FvH4_5g08810' => 'fve', 'FvH4_5g28960' => 'fve', 'FvH4_6g42820' => 'fve', 'FvH4_6g51110' => 'fve', 'Glyma.02G051802' => 'gma', 'Glyma.04G185300' => 'gma', 'Glyma.05G202900' => 'gma', 'Glyma.08G010300' => 'gma', 'Glyma.16G131900' => 'gma', 'Glyma.17G087900' => 'gma', 'Gohir.A07G048600' => 'ghi', 'Gohir.A11G179000' => 'ghi', 'Gohir.A12G140900' => 'ghi', 'Gohir.A12G140950' => 'ghi', 'Gohir.A12G191700' => 'ghi', 'Gohir.A13G086300' => 'ghi', 'Gohir.D07G052900' => 'ghi', 'Gohir.D11G186600' => 'ghi', 'Gohir.D12G145575' => 'ghi', 'Gohir.D12G145650' => 'ghi', 'Gohir.D12G145725' => 'ghi', 'Gohir.D12G194050' => 'ghi', 'Gohir.D13G091800' => 'ghi', 'Gorai.001G055900' => 'gra', 'Gorai.007G198400' => 'gra', 'Gorai.008G157000' => 'gra', 'Gorai.008G157100' => 'gra', 'Gorai.008G208700' => 'gra', 'Gorai.010G138700' => 'gra', 'GSVIVG01000977001' => 'vvi', 'GSVIVG01007708001' => 'vvi', 'GSVIVG01008587001' => 'vvi', 'GSVIVG01018849001' => 'vvi', 'GSVIVG01032432001' => 'vvi', 'HanXRQChr02g0034131' => 'han', 'HanXRQChr02g0035981' => 'han', 'HanXRQChr02g0035991' => 'han', 'HanXRQChr05g0155611' => 'han', 'HanXRQChr05g0155621' => 'han', 'HanXRQChr08g0236501' => 'han', 'HanXRQChr09g0261321' => 'han', 'HanXRQChr09g0272081' => 'han', 'HanXRQChr10g0310741' => 'han', 'HanXRQChr11g0325591' => 'han', 'HanXRQChr12g0385691' => 'han', 'HanXRQChr13g0387801' => 'han', 'HanXRQChr15g0463011' => 'han', 'Haze_03826' => 'cav', 'Haze_03827' => 'cav', 'Haze_07183' => 'cav', 'Haze_07537' => 'cav', 'Haze_07539' => 'cav', 'Haze_12461' => 'cav', 'Haze_16115' => 'cav', 'Haze_16808' => 'cav', 'Haze_18531' => 'cav', 'Hma1.2p1_0046F.1_g026700' => 'hma', 'Hma1.2p1_0046F.1_g026710' => 'hma', 'Hma1.2p1_0168F.1_g074340' => 'hma', 'Hma1.2p1_0266F.1_g107030' => 'hma', 'Hma1.2p1_0266F.1_g107060' => 'hma', 'Hma1.2p1_0275F.1_g110510' => 'hma', 'Hma1.2p1_0592F.1_g185490' => 'hma', 'Hma1.2p1_0592F.1_g185500' => 'hma', 'Hma1.2p1_0592F.1_g185510' => 'hma', 'Hma1.2p1_0592F.1_g185520' => 'hma', 'Hma1.2p1_0592F.1_g185530' => 'hma', 'Hma1.2p1_0818F.1_g223450' => 'hma', 'HPP92_009708' => 'vpl', 'HPP92_009793' => 'vpl', 'HPP92_009796' => 'vpl', 'HPP92_009797' => 'vpl', 'HPP92_014940' => 'vpl', 'HPP92_014988' => 'vpl', 'Hund02463' => 'sun', 'Hund02760' => 'sun', 'Hund05071' => 'sun', 'Hund10108' => 'sun', 'Hund11204' => 'sun', 'Hund14016' => 'sun', 'Hund16464' => 'sun', 'Lalb_Chr09g0333391' => 'lal', 'Lalb_Chr11g0070461' => 'lal', 'Lalb_Chr12g0201671' => 'lal', 'Lalb_Chr13g0297161' => 'lal', 'Lj1g0002823' => 'lja', 'Lj3C1074T6' => 'lonja', 'Lj4A212T28' => 'lonja', 'Lj4g0005516' => 'lja', 'Lj4g0013705' => 'lja', 'Lj4g0027865' => 'lja', 'Lj5C92G16' => 'lonja', 'Lj5C92T12' => 'lonja', 'Lj7C596T3' => 'lonja', 'Lj9A446G59' => 'lonja', 'Lj9A482G21' => 'lonja', 'Lsat_1_v5_gn_1_28261' => 'lsa', 'Lsat_1_v5_gn_1_28281' => 'lsa', 'Lsat_1_v5_gn_1_32721' => 'lsa', 'Lsat_1_v5_gn_4_151760' => 'lsa', 'Lsat_1_v5_gn_4_2120' => 'lsa', 'Lsat_1_v5_gn_4_75761' => 'lsa', 'Lsat_1_v5_gn_5_10920' => 'lsa', 'Manes.02G099900' => 'mes', 'Manes.11G096200' => 'mes', 'Manes.12G007200' => 'mes', 'Manes.14G048300' => 'mes', 'Manes.17G114700' => 'mes', 'Mapoly0002s0070' => 'mpo', 'Mapoly0029s0099' => 'mpo', 'MBI07_g24742_MAGBIO' => 'mbi', 'MBI10_g27988_MAGBIO' => 'mbi', 'MBI11_g13057_MAGBIO' => 'mbi', 'MD02G1137200' => 'mdo', 'MD06G1137200' => 'mdo', 'MD07G1122300' => 'mdo', 'MD09G1078200' => 'mdo', 'MD13G1123700' => 'mdo', 'MD14G1151900' => 'mdo', 'MD17G1030900' => 'mdo', 'MD17G1068200' => 'mdo', 'MD17G1068600' => 'mdo', 'Medtr3g077540' => 'mtr', 'Medtr4g105530' => 'mtr', 'Medtr8g076580' => 'mtr', 'Medtr8g076590' => 'mtr', 'Medtr8g096410' => 'mtr', 'MELO3C016411.2' => 'cme', 'MELO3C017780.2' => 'cme', 'MELO3C022560.2' => 'cme', 'MELO3C026187.2' => 'cme', 'MELO3C026286.2' => 'cme', 'MELO3C032854.2' => 'cme', 'Migut.H02495' => 'egut', 'Migut.I00561' => 'egut', 'Migut.K01015' => 'egut', 'Migut.K01016' => 'egut', 'Migut.L00743' => 'egut', 'Migut.L00744' => 'egut', 'Migut.L00746' => 'egut', 'Migut.L00798' => 'egut', 'Migut.L00799' => 'egut', 'Migut.N02096' => 'egut', 'MSTRG.11259' => 'ama', 'MSTRG.23142' => 'ama', 'MSTRG.2499' => 'ama', 'Nitab4.5_0000003g0730' => 'nta', 'Nitab4.5_0000137g0020' => 'nta', 'Nitab4.5_0000721g0210' => 'nta', 'Nitab4.5_0000723g0050' => 'nta', 'Nitab4.5_0000913g0070' => 'nta', 'Nitab4.5_0001332g0040' => 'nta', 'Nitab4.5_0001771g0050' => 'nta', 'Nitab4.5_0001918g0050' => 'nta', 'Nitab4.5_0002686g0030' => 'nta', 'Nitab4.5_0003156g0020' => 'nta', 'Nitab4.5_0003383g0040' => 'nta', 'Nitab4.5_0003918g0010' => 'nta', 'Nitab4.5_0006760g0010' => 'nta', 'Nn1g05981' => 'nnu', 'Nn1g06288' => 'nnu', 'Nn3g16371' => 'nnu', 'Nn3g16786' => 'nnu', 'Nn4g22232' => 'nnu', 'Oeu005144.1' => 'oeu', 'Oeu005145.1' => 'oeu', 'Oeu011348.1' => 'oeu', 'Oeu016415.1' => 'oeu', 'Oeu023501.1' => 'oeu', 'Oeu044473.1' => 'oeu', 'Oeu048892.2' => 'oeu', 'Os01g0549200' => 'osa', 'Os02g0469300' => 'osa', 'Os04g0311100' => 'osa', 'Os06g0474900' => 'osa', 'Os10g0181700' => 'osa', 'Os11g0454800' => 'osa', 'Peaxi162Scf00037g00714' => 'pax', 'Peaxi162Scf00084g01217' => 'pax', 'Peaxi162Scf00257g00217' => 'pax', 'Peaxi162Scf00516g00215' => 'pax', 'Peaxi162Scf00689g00123' => 'pax', 'PGR044G2719' => 'pgr', 'PGR083G1360' => 'pgr', 'PGR102G2849' => 'pgr', 'PGR119G2534' => 'pgr', 'PGSC0003DMG400003538' => 'stu', 'PGSC0003DMG400028138' => 'stu', 'PGSC0003DMG400031732' => 'stu', 'PGSC0003DMG400038165' => 'stu', 'Phvul.002G284600' => 'pvu', 'Phvul.003G258200' => 'pvu', 'Phvul.009G176500' => 'pvu', 'Potri.003G167201' => 'ptr', 'Potri.005G118400' => 'ptr', 'Potri.012G089000' => 'ptr', 'Potri.012G102800' => 'ptr', 'Potri.015G079400' => 'ptr', 'Potri.015G100900' => 'ptr', 'Pp3c14_9810' => 'ppa', 'Pp3c15_10450' => 'ppa', 'Pp3c20_19150' => 'ppa', 'Pp3c23_12740' => 'ppa', 'Pp3c23_6310' => 'ppa', 'Pp3c24_3720' => 'ppa', 'Pp3c27_2580' => 'ppa', 'Pp3c9_8990' => 'ppa', 'PRCOL_00002854' => 'pco', 'Prupe.1G221200' => 'ppe', 'Prupe.3G289000' => 'ppe', 'Prupe.5G147000' => 'ppe', 'Prupe.6G157300' => 'ppe', 'Prupe.7G163400' => 'ppe', 'Psat0s2177g0040' => 'psa', 'Psat3g174760' => 'psa', 'Psat3g192160' => 'psa', 'Psat4g058520' => 'psa', 'Psat4g096840' => 'psa', 'Psat7g037320' => 'psa', 'PSO017G1274' => 'pso', 'PSO017G5166' => 'pso', 'PSO063G4558' => 'pso', 'PSO170G4458' => 'pso', 'PSO170G5005' => 'pso', 'PSO210G6156' => 'pso', 'PSO210G6635' => 'pso', 'PSO210G7397' => 'pso', 'PSO210G7700' => 'pso', 'PSO455G0035' => 'pso', 'PSO455G0180' => 'pso', 'PSO478G4515' => 'pso', 'PSO832G1305' => 'pso', 'PSO832G3489' => 'pso', 'QL02p075247' => 'qlo', 'QL03p051148' => 'qlo', 'QL05p010313' => 'qlo', 'QL06p034627' => 'qlo', 'QL10p001889' => 'qlo', 'QL10p010846' => 'qlo', 'RcHm_v2.0_Chr1g0350621' => 'rch', 'RcHm_v2.0_Chr1g0350641' => 'rch', 'RcHm_v2.0_Chr2g0092891' => 'rch', 'RcHm_v2.0_Chr2g0100251' => 'rch', 'RcHm_v2.0_Chr2g0158661' => 'rch', 'RcHm_v2.0_Chr2g0172741' => 'rch', 'RcHm_v2.0_Chr4g0429571' => 'rch', 'RcHm_v2.0_Chr5g0042471' => 'rch', 'RcHm_v2.0_Chr7g0189451' => 'rch', 'Rhsim08G0052000' => 'rsi', 'Rhsim08G0174400' => 'rsi', 'Rhsim08G0193200' => 'rsi', 'Rhsim10G0214800' => 'rsi', 'Rhsim10G0214900' => 'rsi', 'Rhsim10G0215000' => 'rsi', 'Rhsim12G0022900' => 'rsi', 'Rhsim12G0177500' => 'rsi', 'Rhsim12G0177700' => 'rsi', 'Sabra03G0122600' => 'sbr', 'Sabra05G0097400' => 'sbr', 'Sabra12G0064100' => 'sbr', 'Sabra15G0121300' => 'sbr', 'SalBow2G0642' => 'sbo', 'SalBow5G2667' => 'sbo', 'SalBow5G4873' => 'sbo', 'SalBow8G2395' => 'sbo', 'Sc03g0003290' => 'sci', 'Sc10g0010130' => 'sci', 'Sc22g0003650' => 'sci', 'Sed0001603' => 'sed', 'Sed0004259' => 'sed', 'Sed0006789' => 'sed', 'Sed0011838' => 'sed', 'Sed0012964' => 'sed', 'Sed0016383' => 'sed', 'Sed0019010' => 'sed', 'Sed0020188' => 'sed', 'SEGI_04702' => 'sgi', 'SEGI_17231' => 'sgi', 'SEGI_18877' => 'sgi', 'SEGI_25196' => 'sgi', 'SEGI_25515' => 'sgi', 'SEGI_28445' => 'sgi', 'SEGI_37452' => 'sgi', 'SGA_v2.0_scaffold188G40336' => 'sas', 'SGA_v2.0_scaffold228G43247' => 'sas', 'SGA_v2.0_scaffold280G46853' => 'sas', 'SGA_v2.0_scaffold34G13808' => 'sas', 'SGA_v2.0_scaffold40G15576' => 'sas', 'SGA_v2.0_scaffold611G53188' => 'sas', 'SGA_v2.0_scaffold78G25461' => 'sas', 'SGA_v2.0_scaffold90G27888' => 'sas', 'SHI08601' => 'shi', 'SHI08606' => 'shi', 'SHI17117' => 'shi', 'SHI17119' => 'shi', 'SMO118G0201' => 'smo', 'SMO169G0247' => 'smo', 'SMO176G0006' => 'smo', 'SMO176G0015' => 'smo', 'SMO202G0006' => 'smo', 'SMO240G0050' => 'smo', 'SMO286G0009' => 'smo', 'SMO338G0033' => 'smo', 'SMO356G0533' => 'smo', 'SMO364G0382' => 'smo', 'SMO367G0166' => 'smo', 'SMO367G1098' => 'smo', 'Solyc01g009920.3' => 'sly', 'Solyc01g099300.3' => 'sly', 'Solyc02g084700.3' => 'sly', 'Solyc03g097520.3' => 'sly', 'Solyc06g071580.3' => 'sly', 'Solyc10g081760.3' => 'sly', 'Sopen01g005480' => 'spe', 'Sopen01g042850' => 'spe', 'Sopen02g029370' => 'spe', 'Sopen03g028280' => 'spe', 'Sopen06g027870' => 'spe', 'Sopen10g032270' => 'spe', 'Sp5g18180' => 'spa', 'Sp6g12880' => 'spa', 'Sp6g30850' => 'spa', 'Sp7g22960' => 'spa', 'Sp7g34010' => 'spa', 'SpUn1326_0010' => 'spa', 'TAR371G0242' => 'tar', 'TAR622G0638' => 'tar', 'TAR628G1548' => 'tar', 'TAR629G1079' => 'tar', 'TAR629G3413' => 'tar', 'THA.LOC104804249' => 'tha', 'THA.LOC104808315' => 'tha', 'THA.LOC104809238' => 'tha', 'THA.LOC104825484' => 'tha', 'Thecc.01G025500' => 'tca', 'Thecc.03G015800' => 'tca', 'Thecc.03G018000' => 'tca', 'Thecc.03G134800' => 'tca', 'Thecc.04G014700' => 'tca', 'Thhalv10006991m.g' => 'esa', 'Thhalv10012707m.g' => 'esa', 'Thhalv10015739m.g' => 'esa', 'Thhalv10024553m.g' => 'esa', 'Thhalv10024673m.g' => 'esa', 'Thhalv10029187m.g' => 'esa', 'TPR.G12971' => 'tpr', 'TPR.G29396' => 'tpr', 'TPR.G33376' => 'tpr', 'TPR.G35508' => 'tpr', 'TPR.G35516' => 'tpr', 'TPR.G37317' => 'tpr', 'TPR.G37389' => 'tpr', 'TPR.G37523' => 'tpr', 'TPR.G559' => 'tpr', 'TWI14G0070' => 'twi', 'TWI14G0729' => 'twi', 'TWI18G0596' => 'twi', 'TWI39G0780' => 'twi', 'TWI39G0850' => 'twi', 'TWI73G1052' => 'twi', 'unitig_52.g17485' => 'ugi', 'unitig_61.g26355' => 'ugi', 'vmacro01040' => 'vma', 'vmacro16731' => 'vma', 'vmacro18270' => 'vma', 'vmacro19142' => 'vma', 'vmacro19407' => 'vma', 'vmacro19408' => 'vma', 'vmacro21899' => 'vma', 'vmacro21900' => 'vma', 'vmacro21901' => 'vma', 'VMungo0251G0490' => 'vmu', 'VMungo0251G1748' => 'vmu', 'VMungo1309G0421' => 'vmu', 'Zm00001eb086500' => 'zma', 'Zm00001eb150680' => 'zma', 'Zm00001eb162330' => 'zma', 'Zm00001eb203130' => 'zma', 'Zm00001eb369480' => 'zma', 'Zm00001eb382340' => 'zma', 'Zm00001eb416360' => 'zma' ), 'gf_id' => 'HOM05D000902', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000902' ), 'data_identifier' => 'HOM05D000902', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000902', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '663', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02470' => 'bna', 'A01p16260' => 'bna', 'A02p01680' => 'bna', 'A03p16600' => 'bna', 'A03p55660' => 'bna', 'A03p64160' => 'bna', 'A03p64170' => 'bna', 'A08p31900' => 'bna', 'A09p59530' => 'bna', 'A10p08230' => 'bna', 'A10p25090' => 'bna', 'Aa31LG3G7100' => 'aar', 'Aa31LG3G7110' => 'aar', 'Aa31LG6G13160' => 'aar', 'Aa31LG7G10770' => 'aar', 'Aa31LG7G3830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2723' => 'aag', 'Actinidia08045' => 'ach', 'Actinidia08888' => 'ach', 'Actinidia18333' => 'ach', 'Actinidia19334' => 'ach', 'Actinidia25552' => 'ach', 'Actinidia26089' => 'ach', 'Actinidia30615' => 'ach', 'Actinidia30616' => 'ach', 'Actinidia33083' => 'ach', 'Actinidia35762' => 'ach', 'Ah.02g110620' => 'amhyb', 'Ah.11g046390' => 'amhyb', 'AL1G31670' => 'aly', 'AL6G23730' => 'aly', 'AL7G14740' => 'aly', 'AL7G14750' => 'aly', 'AL7G14760' => 'aly', 'AL7G28220' => 'aly', 'AL8G24940' => 'aly', 'Aqoxy3G01665' => 'aox', 'Aqoxy3G02853' => 'aox', 'Aqoxy5G01513' => 'aox', 'Aqoxy5G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8SKA4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ75LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKDA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0LJZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7REX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZP4YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWX7I5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2QKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS0L9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPCD8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q161UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC7XCF' => 'arhy', 'AT1G19100' => 'ath', 'AT4G24970' => 'ath', 'AT4G36270' => 'ath', 'AT4G36280' => 'ath', 'AT4G36290' => 'ath', 'AT5G13130' => 'ath', 'AT5G50780' => 'ath', 'ATR0582G266' => 'atr', 'ATR0661G195' => 'atr', 'ATR1152G031' => 'atr', 'Atru.chr11.2382' => 'acertr', 'Atru.chr12.2337' => 'acertr', 'Atru.chr3.744' => 'acertr', 'Atru.chr6.1870' => 'acertr', 'Atru.chr9.2515' => 'acertr', 'AUR62004120' => 'cqu', 'AUR62005667' => 'cqu', 'AUR62007634' => 'cqu', 'AUR62008186' => 'cqu', 'AUR62008187' => 'cqu', 'AUR62008188' => 'cqu', 'AUR62027954' => 'cqu', 'AUR62028766' => 'cqu', 'AUR62028767' => 'cqu', 'AUR62028768' => 'cqu', 'AUR62028886' => 'cqu', 'AUR62029563' => 'cqu', 'AUR62038832' => 'cqu', 'BcaB01g04149' => 'bca', 'BcaB03g12940' => 'bca', 'BcaB03g13090' => 'bca', 'BcaB03g14466' => 'bca', 'BcaB05g24035' => 'bca', 'BcaC01g06050' => 'bca', 'BcaC04g19148' => 'bca', 'BcaC04g20761' => 'bca', 'BcaC06g32845' => 'bca', 'BcaC07g41274' => 'bca', 'BcaC09g50827' => 'bca', 'BcaNung00741' => 'bca', 'BcaNung00742' => 'bca', 'BcaNung01859' => 'bca', 'BcaNung03985' => 'bca', 'BcaNung03989' => 'bca', 'BcaNung05661' => 'bca', 'BolC1t00257H' => 'bol', 'BolC1t01956H' => 'bol', 'BolC2t06534H' => 'bol', 'BolC3t14334H' => 'bol', 'BolC5t30451H' => 'bol', 'BolC7t45880H' => 'bol', 'BolC7t46586H' => 'bol', 'BolC8t49301H' => 'bol', 'BolC8t51837H' => 'bol', 'BolC9t56822H' => 'bol', 'BolC9t59235H' => 'bol', 'BraA01t00234Z' => 'bra', 'BraA01t01563Z' => 'bra', 'BraA02t05147Z' => 'bra', 'BraA03t10947Z' => 'bra', 'BraA03t14633Z' => 'bra', 'BraA08t35112Z' => 'bra', 'BraA09t41330Z' => 'bra', 'BraA10t44570Z' => 'bra', 'C01p02670' => 'bna', 'C01p20260' => 'bna', 'C02p05890' => 'bna', 'C03p19530' => 'bna', 'C05p17470' => 'bna', 'C07p53900' => 'bna', 'C07p61630' => 'bna', 'C08p16800' => 'bna', 'C08p42810' => 'bna', 'C09p39480' => 'bna', 'C09p63980' => 'bna', 'CAN.G1001.7' => 'can', 'CAN.G1034.55' => 'can', 'CAN.G143.7' => 'can', 'CAN.G3340.1' => 'can', 'CAN.G358.19' => 'can', 'CAN.G373.2' => 'can', 'CAN.G674.16' => 'can', 'CAN.G674.17' => 'can', 'CAN.G674.18' => 'can', 'CAN.G732.2' => 'can', 'CAN.G732.3' => 'can', 'CAN.G993.39' => 'can', 'CANSAT01G2052' => 'cansat', 'CANSAT80G0070' => 'cansat', 'CANSAT80G0483' => 'cansat', 'CANSAT80G0625' => 'cansat', 'CARHR019690' => 'chi', 'CARHR080280' => 'chi', 'CARHR152750' => 'chi', 'CARHR152760' => 'chi', 'CARHR152770' => 'chi', 'CARHR200340' => 'chi', 'CARHR232370' => 'chi', 'CARHR244670' => 'chi', 'CARHR244680' => 'chi', 'CARHR257520' => 'chi', 'Carub.0001s1872' => 'cru', 'Carub.0006s1130' => 'cru', 'Carub.0007s0396' => 'cru', 'Carub.0007s0397' => 'cru', 'Carub.0007s1608' => 'cru', 'Carub.0008s1068' => 'cru', 'Carub.0008s1077' => 'cru', 'Ca_16158_v3' => 'car', 'Ca_17571_v3' => 'car', 'Ca_21936_v3' => 'car', 'Ca_22350_v3' => 'car', 'CBR_g22445' => 'cbr', 'CBR_g26290' => 'cbr', 'Cc04_g09610' => 'ccan', 'Cc04_g12280' => 'ccan', 'Cc07_g10230' => 'ccan', 'CDE02G0093' => 'cde', 'CDE02G0701' => 'cde', 'CDE04G1050' => 'cde', 'CDE05G1833' => 'cde', 'CDE05G3058' => 'cde', 'CDE05G3380' => 'cde', 'CDE06G0536' => 'cde', 'Cfa006923' => 'cfa', 'Cfa009402' => 'cfa', 'Cfa018751' => 'cfa', 'Cfa019164' => 'cfa', 'Cfa022935' => 'cfa', 'Ciclev10019081m.g' => 'ccl', 'Ciclev10025076m.g' => 'ccl', 'Ciclev10030712m.g' => 'ccl', 'Ciclev10033760m.g' => 'ccl', 'CiPaw.05G105600' => 'cil', 'CiPaw.08G136700' => 'cil', 'CiPaw.11G003900' => 'cil', 'CiPaw.11G023700' => 'cil', 'CiPaw.12G003700' => 'cil', 'ClCG06G017100' => 'cla', 'ClCG06G018110' => 'cla', 'ClCG07G008800' => 'cla', 'ClCG07G015330' => 'cla', 'COL.COLO4_13698' => 'col', 'COL.COLO4_16659' => 'col', 'COL.COLO4_21986' => 'col', 'COL.COLO4_24049' => 'col', 'COL.COLO4_29061' => 'col', 'COL.COLO4_29075' => 'col', 'COL.COLO4_30094' => 'col', 'Cpa.g.c33689' => 'cpa', 'Cpa.g.sc108.39' => 'cpa', 'Cpa.g.sc108.41' => 'cpa', 'Cpa.g.sc1163.1' => 'cpa', 'Cpa.g.sc4.155' => 'cpa', 'Cpa.g.sc6.194' => 'cpa', 'CsaV3_1G000340' => 'csa', 'CsaV3_1G001400' => 'csa', 'CsaV3_4G002220' => 'csa', 'CsaV3_4G005370' => 'csa', 'CSS0007487' => 'camsi', 'CSS0008066' => 'camsi', 'CSS0009120' => 'camsi', 'CSS0015512' => 'camsi', 'CSS0022409' => 'camsi', 'CSS0025358' => 'camsi', 'CSS0044547' => 'camsi', 'DCAR_013057' => 'dca', 'DCAR_015058' => 'dca', 'DCAR_016027' => 'dca', 'DCAR_017327' => 'dca', 'DCAR_020743' => 'dca', 'DCAR_026157' => 'dca', 'DCAR_032339' => 'dca', 'DCAR_032340' => 'dca', 'Dinv11200' => 'din', 'Dinv11201' => 'din', 'Dinv20631' => 'din', 'Dinv23182' => 'din', 'Dinv33466' => 'din', 'Dinv33583' => 'din', 'Dinv38565' => 'din', 'Duzib068G0200' => 'dzi', 'Duzib147G0132' => 'dzi', 'Duzib147G0635' => 'dzi', 'Duzib205G1670' => 'dzi', 'Duzib251G0606' => 'dzi', 'ECA232G3336' => 'eca', 'ECA232G3763' => 'eca', 'ECA232G4845' => 'eca', 'ECA234G1607' => 'eca', 'ECA246G0932' => 'eca', 'ECA247G0781' => 'eca', 'ECA247G1932' => 'eca', 'ECA247G2079' => 'eca', 'ECA247G3338' => 'eca', 'ECA247G4115' => 'eca', 'EL10Ac3g06552' => 'bvu', 'EL10Ac5g10721' => 'bvu', 'EL10Ac5g10722' => 'bvu', 'EL10Ac5g10723' => 'bvu', 'EL10Ac5g11361' => 'bvu', 'EL10Ac6g13553' => 'bvu', 'EL10As8g23872' => 'bvu', 'Eucgr.B00250' => 'egr', 'Eucgr.B00251' => 'egr', 'Eucgr.B03533' => 'egr', 'Eucgr.I02381' => 'egr', 'Eucgr.K02700' => 'egr', 'FAN02G0174' => 'fan', 'FAN02G3146' => 'fan', 'FAN04G1672' => 'fan', 'FAN04G2273' => 'fan', 'FAN05G2791' => 'fan', 'FAN05G4035' => 'fan', 'FAN07G0834' => 'fan', 'FAN08G1198' => 'fan', 'FAN09G4182' => 'fan', 'FAN12G0496' => 'fan', 'FAN13G1027' => 'fan', 'FAN13G2951' => 'fan', 'FAN14G0705' => 'fan', 'FAN14G0720' => 'fan', 'FAN17G0201' => 'fan', 'FAN17G2665' => 'fan', 'FAN18G1456' => 'fan', 'FAN18G1525' => 'fan', 'FAN18G3500' => 'fan', 'FAN28G2670' => 'fan', 'FvH4_1g12391' => 'fve', 'FvH4_4g23220' => 'fve', 'FvH4_5g08810' => 'fve', 'FvH4_5g28960' => 'fve', 'FvH4_6g42820' => 'fve', 'FvH4_6g51110' => 'fve', 'Glyma.02G051802' => 'gma', 'Glyma.04G185300' => 'gma', 'Glyma.05G202900' => 'gma', 'Glyma.08G010300' => 'gma', 'Glyma.16G131900' => 'gma', 'Glyma.17G087900' => 'gma', 'Gohir.A07G048600' => 'ghi', 'Gohir.A11G179000' => 'ghi', 'Gohir.A12G140900' => 'ghi', 'Gohir.A12G140950' => 'ghi', 'Gohir.A12G191700' => 'ghi', 'Gohir.A13G086300' => 'ghi', 'Gohir.D07G052900' => 'ghi', 'Gohir.D11G186600' => 'ghi', 'Gohir.D12G145575' => 'ghi', 'Gohir.D12G145650' => 'ghi', 'Gohir.D12G145725' => 'ghi', 'Gohir.D12G194050' => 'ghi', 'Gohir.D13G091800' => 'ghi', 'Gorai.001G055900' => 'gra', 'Gorai.007G198400' => 'gra', 'Gorai.008G157000' => 'gra', 'Gorai.008G157100' => 'gra', 'Gorai.008G208700' => 'gra', 'Gorai.010G138700' => 'gra', 'GSVIVG01000977001' => 'vvi', 'GSVIVG01007708001' => 'vvi', 'GSVIVG01008587001' => 'vvi', 'GSVIVG01018849001' => 'vvi', 'GSVIVG01032432001' => 'vvi', 'HanXRQChr02g0034131' => 'han', 'HanXRQChr02g0035981' => 'han', 'HanXRQChr02g0035991' => 'han', 'HanXRQChr05g0155611' => 'han', 'HanXRQChr05g0155621' => 'han', 'HanXRQChr08g0236501' => 'han', 'HanXRQChr09g0261321' => 'han', 'HanXRQChr09g0272081' => 'han', 'HanXRQChr10g0310741' => 'han', 'HanXRQChr11g0325591' => 'han', 'HanXRQChr12g0385691' => 'han', 'HanXRQChr13g0387801' => 'han', 'HanXRQChr15g0463011' => 'han', 'Haze_03826' => 'cav', 'Haze_03827' => 'cav', 'Haze_07183' => 'cav', 'Haze_07537' => 'cav', 'Haze_07539' => 'cav', 'Haze_12461' => 'cav', 'Haze_16115' => 'cav', 'Haze_16808' => 'cav', 'Haze_18531' => 'cav', 'Hma1.2p1_0046F.1_g026700' => 'hma', 'Hma1.2p1_0046F.1_g026710' => 'hma', 'Hma1.2p1_0168F.1_g074340' => 'hma', 'Hma1.2p1_0266F.1_g107030' => 'hma', 'Hma1.2p1_0266F.1_g107060' => 'hma', 'Hma1.2p1_0275F.1_g110510' => 'hma', 'Hma1.2p1_0592F.1_g185490' => 'hma', 'Hma1.2p1_0592F.1_g185500' => 'hma', 'Hma1.2p1_0592F.1_g185510' => 'hma', 'Hma1.2p1_0592F.1_g185520' => 'hma', 'Hma1.2p1_0592F.1_g185530' => 'hma', 'Hma1.2p1_0818F.1_g223450' => 'hma', 'HPP92_009708' => 'vpl', 'HPP92_009793' => 'vpl', 'HPP92_009796' => 'vpl', 'HPP92_009797' => 'vpl', 'HPP92_014940' => 'vpl', 'HPP92_014988' => 'vpl', 'Hund02463' => 'sun', 'Hund02760' => 'sun', 'Hund05071' => 'sun', 'Hund10108' => 'sun', 'Hund11204' => 'sun', 'Hund14016' => 'sun', 'Hund16464' => 'sun', 'Lalb_Chr09g0333391' => 'lal', 'Lalb_Chr11g0070461' => 'lal', 'Lalb_Chr12g0201671' => 'lal', 'Lalb_Chr13g0297161' => 'lal', 'Lj1g0002823' => 'lja', 'Lj3C1074T6' => 'lonja', 'Lj4A212T28' => 'lonja', 'Lj4g0005516' => 'lja', 'Lj4g0013705' => 'lja', 'Lj4g0027865' => 'lja', 'Lj5C92G16' => 'lonja', 'Lj5C92T12' => 'lonja', 'Lj7C596T3' => 'lonja', 'Lj9A446G59' => 'lonja', 'Lj9A482G21' => 'lonja', 'Lsat_1_v5_gn_1_28261' => 'lsa', 'Lsat_1_v5_gn_1_28281' => 'lsa', 'Lsat_1_v5_gn_1_32721' => 'lsa', 'Lsat_1_v5_gn_4_151760' => 'lsa', 'Lsat_1_v5_gn_4_2120' => 'lsa', 'Lsat_1_v5_gn_4_75761' => 'lsa', 'Lsat_1_v5_gn_5_10920' => 'lsa', 'Manes.02G099900' => 'mes', 'Manes.11G096200' => 'mes', 'Manes.12G007200' => 'mes', 'Manes.14G048300' => 'mes', 'Manes.17G114700' => 'mes', 'Mapoly0002s0070' => 'mpo', 'Mapoly0029s0099' => 'mpo', 'MBI07_g24742_MAGBIO' => 'mbi', 'MBI10_g27988_MAGBIO' => 'mbi', 'MBI11_g13057_MAGBIO' => 'mbi', 'MD02G1137200' => 'mdo', 'MD06G1137200' => 'mdo', 'MD07G1122300' => 'mdo', 'MD09G1078200' => 'mdo', 'MD13G1123700' => 'mdo', 'MD14G1151900' => 'mdo', 'MD17G1030900' => 'mdo', 'MD17G1068200' => 'mdo', 'MD17G1068600' => 'mdo', 'Medtr3g077540' => 'mtr', 'Medtr4g105530' => 'mtr', 'Medtr8g076580' => 'mtr', 'Medtr8g076590' => 'mtr', 'Medtr8g096410' => 'mtr', 'MELO3C016411.2' => 'cme', 'MELO3C017780.2' => 'cme', 'MELO3C022560.2' => 'cme', 'MELO3C026187.2' => 'cme', 'MELO3C026286.2' => 'cme', 'MELO3C032854.2' => 'cme', 'Migut.H02495' => 'egut', 'Migut.I00561' => 'egut', 'Migut.K01015' => 'egut', 'Migut.K01016' => 'egut', 'Migut.L00743' => 'egut', 'Migut.L00744' => 'egut', 'Migut.L00746' => 'egut', 'Migut.L00798' => 'egut', 'Migut.L00799' => 'egut', 'Migut.N02096' => 'egut', 'MSTRG.11259' => 'ama', 'MSTRG.23142' => 'ama', 'MSTRG.2499' => 'ama', 'Nitab4.5_0000003g0730' => 'nta', 'Nitab4.5_0000137g0020' => 'nta', 'Nitab4.5_0000721g0210' => 'nta', 'Nitab4.5_0000723g0050' => 'nta', 'Nitab4.5_0000913g0070' => 'nta', 'Nitab4.5_0001332g0040' => 'nta', 'Nitab4.5_0001771g0050' => 'nta', 'Nitab4.5_0001918g0050' => 'nta', 'Nitab4.5_0002686g0030' => 'nta', 'Nitab4.5_0003156g0020' => 'nta', 'Nitab4.5_0003383g0040' => 'nta', 'Nitab4.5_0003918g0010' => 'nta', 'Nitab4.5_0006760g0010' => 'nta', 'Nn1g05981' => 'nnu', 'Nn1g06288' => 'nnu', 'Nn3g16371' => 'nnu', 'Nn3g16786' => 'nnu', 'Nn4g22232' => 'nnu', 'Oeu005144.1' => 'oeu', 'Oeu005145.1' => 'oeu', 'Oeu011348.1' => 'oeu', 'Oeu016415.1' => 'oeu', 'Oeu023501.1' => 'oeu', 'Oeu044473.1' => 'oeu', 'Oeu048892.2' => 'oeu', 'Os01g0549200' => 'osa', 'Os02g0469300' => 'osa', 'Os04g0311100' => 'osa', 'Os06g0474900' => 'osa', 'Os10g0181700' => 'osa', 'Os11g0454800' => 'osa', 'Peaxi162Scf00037g00714' => 'pax', 'Peaxi162Scf00084g01217' => 'pax', 'Peaxi162Scf00257g00217' => 'pax', 'Peaxi162Scf00516g00215' => 'pax', 'Peaxi162Scf00689g00123' => 'pax', 'PGR044G2719' => 'pgr', 'PGR083G1360' => 'pgr', 'PGR102G2849' => 'pgr', 'PGR119G2534' => 'pgr', 'PGSC0003DMG400003538' => 'stu', 'PGSC0003DMG400028138' => 'stu', 'PGSC0003DMG400031732' => 'stu', 'PGSC0003DMG400038165' => 'stu', 'Phvul.002G284600' => 'pvu', 'Phvul.003G258200' => 'pvu', 'Phvul.009G176500' => 'pvu', 'Potri.003G167201' => 'ptr', 'Potri.005G118400' => 'ptr', 'Potri.012G089000' => 'ptr', 'Potri.012G102800' => 'ptr', 'Potri.015G079400' => 'ptr', 'Potri.015G100900' => 'ptr', 'Pp3c14_9810' => 'ppa', 'Pp3c15_10450' => 'ppa', 'Pp3c20_19150' => 'ppa', 'Pp3c23_12740' => 'ppa', 'Pp3c23_6310' => 'ppa', 'Pp3c24_3720' => 'ppa', 'Pp3c27_2580' => 'ppa', 'Pp3c9_8990' => 'ppa', 'PRCOL_00002854' => 'pco', 'Prupe.1G221200' => 'ppe', 'Prupe.3G289000' => 'ppe', 'Prupe.5G147000' => 'ppe', 'Prupe.6G157300' => 'ppe', 'Prupe.7G163400' => 'ppe', 'Psat0s2177g0040' => 'psa', 'Psat3g174760' => 'psa', 'Psat3g192160' => 'psa', 'Psat4g058520' => 'psa', 'Psat4g096840' => 'psa', 'Psat7g037320' => 'psa', 'PSO017G1274' => 'pso', 'PSO017G5166' => 'pso', 'PSO063G4558' => 'pso', 'PSO170G4458' => 'pso', 'PSO170G5005' => 'pso', 'PSO210G6156' => 'pso', 'PSO210G6635' => 'pso', 'PSO210G7397' => 'pso', 'PSO210G7700' => 'pso', 'PSO455G0035' => 'pso', 'PSO455G0180' => 'pso', 'PSO478G4515' => 'pso', 'PSO832G1305' => 'pso', 'PSO832G3489' => 'pso', 'QL02p075247' => 'qlo', 'QL03p051148' => 'qlo', 'QL05p010313' => 'qlo', 'QL06p034627' => 'qlo', 'QL10p001889' => 'qlo', 'QL10p010846' => 'qlo', 'RcHm_v2.0_Chr1g0350621' => 'rch', 'RcHm_v2.0_Chr1g0350641' => 'rch', 'RcHm_v2.0_Chr2g0092891' => 'rch', 'RcHm_v2.0_Chr2g0100251' => 'rch', 'RcHm_v2.0_Chr2g0158661' => 'rch', 'RcHm_v2.0_Chr2g0172741' => 'rch', 'RcHm_v2.0_Chr4g0429571' => 'rch', 'RcHm_v2.0_Chr5g0042471' => 'rch', 'RcHm_v2.0_Chr7g0189451' => 'rch', 'Rhsim08G0052000' => 'rsi', 'Rhsim08G0174400' => 'rsi', 'Rhsim08G0193200' => 'rsi', 'Rhsim10G0214800' => 'rsi', 'Rhsim10G0214900' => 'rsi', 'Rhsim10G0215000' => 'rsi', 'Rhsim12G0022900' => 'rsi', 'Rhsim12G0177500' => 'rsi', 'Rhsim12G0177700' => 'rsi', 'Sabra03G0122600' => 'sbr', 'Sabra05G0097400' => 'sbr', 'Sabra12G0064100' => 'sbr', 'Sabra15G0121300' => 'sbr', 'SalBow2G0642' => 'sbo', 'SalBow5G2667' => 'sbo', 'SalBow5G4873' => 'sbo', 'SalBow8G2395' => 'sbo', 'Sc03g0003290' => 'sci', 'Sc10g0010130' => 'sci', 'Sc22g0003650' => 'sci', 'Sed0001603' => 'sed', 'Sed0004259' => 'sed', 'Sed0006789' => 'sed', 'Sed0011838' => 'sed', 'Sed0012964' => 'sed', 'Sed0016383' => 'sed', 'Sed0019010' => 'sed', 'Sed0020188' => 'sed', 'SEGI_04702' => 'sgi', 'SEGI_17231' => 'sgi', 'SEGI_18877' => 'sgi', 'SEGI_25196' => 'sgi', 'SEGI_25515' => 'sgi', 'SEGI_28445' => 'sgi', 'SEGI_37452' => 'sgi', 'SGA_v2.0_scaffold188G40336' => 'sas', 'SGA_v2.0_scaffold228G43247' => 'sas', 'SGA_v2.0_scaffold280G46853' => 'sas', 'SGA_v2.0_scaffold34G13808' => 'sas', 'SGA_v2.0_scaffold40G15576' => 'sas', 'SGA_v2.0_scaffold611G53188' => 'sas', 'SGA_v2.0_scaffold78G25461' => 'sas', 'SGA_v2.0_scaffold90G27888' => 'sas', 'SHI08601' => 'shi', 'SHI08606' => 'shi', 'SHI17117' => 'shi', 'SHI17119' => 'shi', 'SMO118G0201' => 'smo', 'SMO169G0247' => 'smo', 'SMO176G0006' => 'smo', 'SMO176G0015' => 'smo', 'SMO202G0006' => 'smo', 'SMO240G0050' => 'smo', 'SMO286G0009' => 'smo', 'SMO338G0033' => 'smo', 'SMO356G0533' => 'smo', 'SMO364G0382' => 'smo', 'SMO367G0166' => 'smo', 'SMO367G1098' => 'smo', 'Solyc01g009920.3' => 'sly', 'Solyc01g099300.3' => 'sly', 'Solyc02g084700.3' => 'sly', 'Solyc03g097520.3' => 'sly', 'Solyc06g071580.3' => 'sly', 'Solyc10g081760.3' => 'sly', 'Sopen01g005480' => 'spe', 'Sopen01g042850' => 'spe', 'Sopen02g029370' => 'spe', 'Sopen03g028280' => 'spe', 'Sopen06g027870' => 'spe', 'Sopen10g032270' => 'spe', 'Sp5g18180' => 'spa', 'Sp6g12880' => 'spa', 'Sp6g30850' => 'spa', 'Sp7g22960' => 'spa', 'Sp7g34010' => 'spa', 'SpUn1326_0010' => 'spa', 'TAR371G0242' => 'tar', 'TAR622G0638' => 'tar', 'TAR628G1548' => 'tar', 'TAR629G1079' => 'tar', 'TAR629G3413' => 'tar', 'THA.LOC104804249' => 'tha', 'THA.LOC104808315' => 'tha', 'THA.LOC104809238' => 'tha', 'THA.LOC104825484' => 'tha', 'Thecc.01G025500' => 'tca', 'Thecc.03G015800' => 'tca', 'Thecc.03G018000' => 'tca', 'Thecc.03G134800' => 'tca', 'Thecc.04G014700' => 'tca', 'Thhalv10006991m.g' => 'esa', 'Thhalv10012707m.g' => 'esa', 'Thhalv10015739m.g' => 'esa', 'Thhalv10024553m.g' => 'esa', 'Thhalv10024673m.g' => 'esa', 'Thhalv10029187m.g' => 'esa', 'TPR.G12971' => 'tpr', 'TPR.G29396' => 'tpr', 'TPR.G33376' => 'tpr', 'TPR.G35508' => 'tpr', 'TPR.G35516' => 'tpr', 'TPR.G37317' => 'tpr', 'TPR.G37389' => 'tpr', 'TPR.G37523' => 'tpr', 'TPR.G559' => 'tpr', 'TWI14G0070' => 'twi', 'TWI14G0729' => 'twi', 'TWI18G0596' => 'twi', 'TWI39G0780' => 'twi', 'TWI39G0850' => 'twi', 'TWI73G1052' => 'twi', 'unitig_52.g17485' => 'ugi', 'unitig_61.g26355' => 'ugi', 'vmacro01040' => 'vma', 'vmacro16731' => 'vma', 'vmacro18270' => 'vma', 'vmacro19142' => 'vma', 'vmacro19407' => 'vma', 'vmacro19408' => 'vma', 'vmacro21899' => 'vma', 'vmacro21900' => 'vma', 'vmacro21901' => 'vma', 'VMungo0251G0490' => 'vmu', 'VMungo0251G1748' => 'vmu', 'VMungo1309G0421' => 'vmu', 'Zm00001eb086500' => 'zma', 'Zm00001eb150680' => 'zma', 'Zm00001eb162330' => 'zma', 'Zm00001eb203130' => 'zma', 'Zm00001eb369480' => 'zma', 'Zm00001eb382340' => 'zma', 'Zm00001eb416360' => 'zma' ) $gf_id = 'HOM05D000902' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000902' ) $data_identifier = 'HOM05D000902' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 13, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 10, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 6, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 9, 'hma' => (int) 12, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 4, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 6, 'ppa' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 6, 'rch' => (int) 9, 'rsi' => (int) 9, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 12, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 3, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416360' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000902', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '663', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02470' => 'bna', 'A01p16260' => 'bna', 'A02p01680' => 'bna', 'A03p16600' => 'bna', 'A03p55660' => 'bna', 'A03p64160' => 'bna', 'A03p64170' => 'bna', 'A08p31900' => 'bna', 'A09p59530' => 'bna', 'A10p08230' => 'bna', 'A10p25090' => 'bna', 'Aa31LG3G7100' => 'aar', 'Aa31LG3G7110' => 'aar', 'Aa31LG6G13160' => 'aar', 'Aa31LG7G10770' => 'aar', 'Aa31LG7G3830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2723' => 'aag', 'Actinidia08045' => 'ach', 'Actinidia08888' => 'ach', 'Actinidia18333' => 'ach', 'Actinidia19334' => 'ach', 'Actinidia25552' => 'ach', 'Actinidia26089' => 'ach', 'Actinidia30615' => 'ach', 'Actinidia30616' => 'ach', 'Actinidia33083' => 'ach', 'Actinidia35762' => 'ach', 'Ah.02g110620' => 'amhyb', 'Ah.11g046390' => 'amhyb', 'AL1G31670' => 'aly', 'AL6G23730' => 'aly', 'AL7G14740' => 'aly', 'AL7G14750' => 'aly', 'AL7G14760' => 'aly', 'AL7G28220' => 'aly', 'AL8G24940' => 'aly', 'Aqoxy3G01665' => 'aox', 'Aqoxy3G02853' => 'aox', 'Aqoxy5G01513' => 'aox', 'Aqoxy5G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8SKA4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ75LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKDA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0LJZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7REX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZP4YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWX7I5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2QKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS0L9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPCD8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q161UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC7XCF' => 'arhy', 'AT1G19100' => 'ath', 'AT4G24970' => 'ath', 'AT4G36270' => 'ath', 'AT4G36280' => 'ath', 'AT4G36290' => 'ath', 'AT5G13130' => 'ath', 'AT5G50780' => 'ath', 'ATR0582G266' => 'atr', 'ATR0661G195' => 'atr', 'ATR1152G031' => 'atr', 'Atru.chr11.2382' => 'acertr', 'Atru.chr12.2337' => 'acertr', 'Atru.chr3.744' => 'acertr', 'Atru.chr6.1870' => 'acertr', 'Atru.chr9.2515' => 'acertr', 'AUR62004120' => 'cqu', 'AUR62005667' => 'cqu', 'AUR62007634' => 'cqu', 'AUR62008186' => 'cqu', 'AUR62008187' => 'cqu', 'AUR62008188' => 'cqu', 'AUR62027954' => 'cqu', 'AUR62028766' => 'cqu', 'AUR62028767' => 'cqu', 'AUR62028768' => 'cqu', 'AUR62028886' => 'cqu', 'AUR62029563' => 'cqu', 'AUR62038832' => 'cqu', 'BcaB01g04149' => 'bca', 'BcaB03g12940' => 'bca', 'BcaB03g13090' => 'bca', 'BcaB03g14466' => 'bca', 'BcaB05g24035' => 'bca', 'BcaC01g06050' => 'bca', 'BcaC04g19148' => 'bca', 'BcaC04g20761' => 'bca', 'BcaC06g32845' => 'bca', 'BcaC07g41274' => 'bca', 'BcaC09g50827' => 'bca', 'BcaNung00741' => 'bca', 'BcaNung00742' => 'bca', 'BcaNung01859' => 'bca', 'BcaNung03985' => 'bca', 'BcaNung03989' => 'bca', 'BcaNung05661' => 'bca', 'BolC1t00257H' => 'bol', 'BolC1t01956H' => 'bol', 'BolC2t06534H' => 'bol', 'BolC3t14334H' => 'bol', 'BolC5t30451H' => 'bol', 'BolC7t45880H' => 'bol', 'BolC7t46586H' => 'bol', 'BolC8t49301H' => 'bol', 'BolC8t51837H' => 'bol', 'BolC9t56822H' => 'bol', 'BolC9t59235H' => 'bol', 'BraA01t00234Z' => 'bra', 'BraA01t01563Z' => 'bra', 'BraA02t05147Z' => 'bra', 'BraA03t10947Z' => 'bra', 'BraA03t14633Z' => 'bra', 'BraA08t35112Z' => 'bra', 'BraA09t41330Z' => 'bra', 'BraA10t44570Z' => 'bra', 'C01p02670' => 'bna', 'C01p20260' => 'bna', 'C02p05890' => 'bna', 'C03p19530' => 'bna', 'C05p17470' => 'bna', 'C07p53900' => 'bna', 'C07p61630' => 'bna', 'C08p16800' => 'bna', 'C08p42810' => 'bna', 'C09p39480' => 'bna', 'C09p63980' => 'bna', 'CAN.G1001.7' => 'can', 'CAN.G1034.55' => 'can', 'CAN.G143.7' => 'can', 'CAN.G3340.1' => 'can', 'CAN.G358.19' => 'can', 'CAN.G373.2' => 'can', 'CAN.G674.16' => 'can', 'CAN.G674.17' => 'can', 'CAN.G674.18' => 'can', 'CAN.G732.2' => 'can', 'CAN.G732.3' => 'can', 'CAN.G993.39' => 'can', 'CANSAT01G2052' => 'cansat', 'CANSAT80G0070' => 'cansat', 'CANSAT80G0483' => 'cansat', 'CANSAT80G0625' => 'cansat', 'CARHR019690' => 'chi', 'CARHR080280' => 'chi', 'CARHR152750' => 'chi', 'CARHR152760' => 'chi', 'CARHR152770' => 'chi', 'CARHR200340' => 'chi', 'CARHR232370' => 'chi', 'CARHR244670' => 'chi', 'CARHR244680' => 'chi', 'CARHR257520' => 'chi', 'Carub.0001s1872' => 'cru', 'Carub.0006s1130' => 'cru', 'Carub.0007s0396' => 'cru', 'Carub.0007s0397' => 'cru', 'Carub.0007s1608' => 'cru', 'Carub.0008s1068' => 'cru', 'Carub.0008s1077' => 'cru', 'Ca_16158_v3' => 'car', 'Ca_17571_v3' => 'car', 'Ca_21936_v3' => 'car', 'Ca_22350_v3' => 'car', 'CBR_g22445' => 'cbr', 'CBR_g26290' => 'cbr', 'Cc04_g09610' => 'ccan', 'Cc04_g12280' => 'ccan', 'Cc07_g10230' => 'ccan', 'CDE02G0093' => 'cde', 'CDE02G0701' => 'cde', 'CDE04G1050' => 'cde', 'CDE05G1833' => 'cde', 'CDE05G3058' => 'cde', 'CDE05G3380' => 'cde', 'CDE06G0536' => 'cde', 'Cfa006923' => 'cfa', 'Cfa009402' => 'cfa', 'Cfa018751' => 'cfa', 'Cfa019164' => 'cfa', 'Cfa022935' => 'cfa', 'Ciclev10019081m.g' => 'ccl', 'Ciclev10025076m.g' => 'ccl', 'Ciclev10030712m.g' => 'ccl', 'Ciclev10033760m.g' => 'ccl', 'CiPaw.05G105600' => 'cil', 'CiPaw.08G136700' => 'cil', 'CiPaw.11G003900' => 'cil', 'CiPaw.11G023700' => 'cil', 'CiPaw.12G003700' => 'cil', 'ClCG06G017100' => 'cla', 'ClCG06G018110' => 'cla', 'ClCG07G008800' => 'cla', 'ClCG07G015330' => 'cla', 'COL.COLO4_13698' => 'col', 'COL.COLO4_16659' => 'col', 'COL.COLO4_21986' => 'col', 'COL.COLO4_24049' => 'col', 'COL.COLO4_29061' => 'col', 'COL.COLO4_29075' => 'col', 'COL.COLO4_30094' => 'col', 'Cpa.g.c33689' => 'cpa', 'Cpa.g.sc108.39' => 'cpa', 'Cpa.g.sc108.41' => 'cpa', 'Cpa.g.sc1163.1' => 'cpa', 'Cpa.g.sc4.155' => 'cpa', 'Cpa.g.sc6.194' => 'cpa', 'CsaV3_1G000340' => 'csa', 'CsaV3_1G001400' => 'csa', 'CsaV3_4G002220' => 'csa', 'CsaV3_4G005370' => 'csa', 'CSS0007487' => 'camsi', 'CSS0008066' => 'camsi', 'CSS0009120' => 'camsi', 'CSS0015512' => 'camsi', 'CSS0022409' => 'camsi', 'CSS0025358' => 'camsi', 'CSS0044547' => 'camsi', 'DCAR_013057' => 'dca', 'DCAR_015058' => 'dca', 'DCAR_016027' => 'dca', 'DCAR_017327' => 'dca', 'DCAR_020743' => 'dca', 'DCAR_026157' => 'dca', 'DCAR_032339' => 'dca', 'DCAR_032340' => 'dca', 'Dinv11200' => 'din', 'Dinv11201' => 'din', 'Dinv20631' => 'din', 'Dinv23182' => 'din', 'Dinv33466' => 'din', 'Dinv33583' => 'din', 'Dinv38565' => 'din', 'Duzib068G0200' => 'dzi', 'Duzib147G0132' => 'dzi', 'Duzib147G0635' => 'dzi', 'Duzib205G1670' => 'dzi', 'Duzib251G0606' => 'dzi', 'ECA232G3336' => 'eca', 'ECA232G3763' => 'eca', 'ECA232G4845' => 'eca', 'ECA234G1607' => 'eca', 'ECA246G0932' => 'eca', 'ECA247G0781' => 'eca', 'ECA247G1932' => 'eca', 'ECA247G2079' => 'eca', 'ECA247G3338' => 'eca', 'ECA247G4115' => 'eca', 'EL10Ac3g06552' => 'bvu', 'EL10Ac5g10721' => 'bvu', 'EL10Ac5g10722' => 'bvu', 'EL10Ac5g10723' => 'bvu', 'EL10Ac5g11361' => 'bvu', 'EL10Ac6g13553' => 'bvu', 'EL10As8g23872' => 'bvu', 'Eucgr.B00250' => 'egr', 'Eucgr.B00251' => 'egr', 'Eucgr.B03533' => 'egr', 'Eucgr.I02381' => 'egr', 'Eucgr.K02700' => 'egr', 'FAN02G0174' => 'fan', 'FAN02G3146' => 'fan', 'FAN04G1672' => 'fan', 'FAN04G2273' => 'fan', 'FAN05G2791' => 'fan', 'FAN05G4035' => 'fan', 'FAN07G0834' => 'fan', 'FAN08G1198' => 'fan', 'FAN09G4182' => 'fan', 'FAN12G0496' => 'fan', 'FAN13G1027' => 'fan', 'FAN13G2951' => 'fan', 'FAN14G0705' => 'fan', 'FAN14G0720' => 'fan', 'FAN17G0201' => 'fan', 'FAN17G2665' => 'fan', 'FAN18G1456' => 'fan', 'FAN18G1525' => 'fan', 'FAN18G3500' => 'fan', 'FAN28G2670' => 'fan', 'FvH4_1g12391' => 'fve', 'FvH4_4g23220' => 'fve', 'FvH4_5g08810' => 'fve', 'FvH4_5g28960' => 'fve', 'FvH4_6g42820' => 'fve', 'FvH4_6g51110' => 'fve', 'Glyma.02G051802' => 'gma', 'Glyma.04G185300' => 'gma', 'Glyma.05G202900' => 'gma', 'Glyma.08G010300' => 'gma', 'Glyma.16G131900' => 'gma', 'Glyma.17G087900' => 'gma', 'Gohir.A07G048600' => 'ghi', 'Gohir.A11G179000' => 'ghi', 'Gohir.A12G140900' => 'ghi', 'Gohir.A12G140950' => 'ghi', 'Gohir.A12G191700' => 'ghi', 'Gohir.A13G086300' => 'ghi', 'Gohir.D07G052900' => 'ghi', 'Gohir.D11G186600' => 'ghi', 'Gohir.D12G145575' => 'ghi', 'Gohir.D12G145650' => 'ghi', 'Gohir.D12G145725' => 'ghi', 'Gohir.D12G194050' => 'ghi', 'Gohir.D13G091800' => 'ghi', 'Gorai.001G055900' => 'gra', 'Gorai.007G198400' => 'gra', 'Gorai.008G157000' => 'gra', 'Gorai.008G157100' => 'gra', 'Gorai.008G208700' => 'gra', 'Gorai.010G138700' => 'gra', 'GSVIVG01000977001' => 'vvi', 'GSVIVG01007708001' => 'vvi', 'GSVIVG01008587001' => 'vvi', 'GSVIVG01018849001' => 'vvi', 'GSVIVG01032432001' => 'vvi', 'HanXRQChr02g0034131' => 'han', 'HanXRQChr02g0035981' => 'han', 'HanXRQChr02g0035991' => 'han', 'HanXRQChr05g0155611' => 'han', 'HanXRQChr05g0155621' => 'han', 'HanXRQChr08g0236501' => 'han', 'HanXRQChr09g0261321' => 'han', 'HanXRQChr09g0272081' => 'han', 'HanXRQChr10g0310741' => 'han', 'HanXRQChr11g0325591' => 'han', 'HanXRQChr12g0385691' => 'han', 'HanXRQChr13g0387801' => 'han', 'HanXRQChr15g0463011' => 'han', 'Haze_03826' => 'cav', 'Haze_03827' => 'cav', 'Haze_07183' => 'cav', 'Haze_07537' => 'cav', 'Haze_07539' => 'cav', 'Haze_12461' => 'cav', 'Haze_16115' => 'cav', 'Haze_16808' => 'cav', 'Haze_18531' => 'cav', 'Hma1.2p1_0046F.1_g026700' => 'hma', 'Hma1.2p1_0046F.1_g026710' => 'hma', 'Hma1.2p1_0168F.1_g074340' => 'hma', 'Hma1.2p1_0266F.1_g107030' => 'hma', 'Hma1.2p1_0266F.1_g107060' => 'hma', 'Hma1.2p1_0275F.1_g110510' => 'hma', 'Hma1.2p1_0592F.1_g185490' => 'hma', 'Hma1.2p1_0592F.1_g185500' => 'hma', 'Hma1.2p1_0592F.1_g185510' => 'hma', 'Hma1.2p1_0592F.1_g185520' => 'hma', 'Hma1.2p1_0592F.1_g185530' => 'hma', 'Hma1.2p1_0818F.1_g223450' => 'hma', 'HPP92_009708' => 'vpl', 'HPP92_009793' => 'vpl', 'HPP92_009796' => 'vpl', 'HPP92_009797' => 'vpl', 'HPP92_014940' => 'vpl', 'HPP92_014988' => 'vpl', 'Hund02463' => 'sun', 'Hund02760' => 'sun', 'Hund05071' => 'sun', 'Hund10108' => 'sun', 'Hund11204' => 'sun', 'Hund14016' => 'sun', 'Hund16464' => 'sun', 'Lalb_Chr09g0333391' => 'lal', 'Lalb_Chr11g0070461' => 'lal', 'Lalb_Chr12g0201671' => 'lal', 'Lalb_Chr13g0297161' => 'lal', 'Lj1g0002823' => 'lja', 'Lj3C1074T6' => 'lonja', 'Lj4A212T28' => 'lonja', 'Lj4g0005516' => 'lja', 'Lj4g0013705' => 'lja', 'Lj4g0027865' => 'lja', 'Lj5C92G16' => 'lonja', 'Lj5C92T12' => 'lonja', 'Lj7C596T3' => 'lonja', 'Lj9A446G59' => 'lonja', 'Lj9A482G21' => 'lonja', 'Lsat_1_v5_gn_1_28261' => 'lsa', 'Lsat_1_v5_gn_1_28281' => 'lsa', 'Lsat_1_v5_gn_1_32721' => 'lsa', 'Lsat_1_v5_gn_4_151760' => 'lsa', 'Lsat_1_v5_gn_4_2120' => 'lsa', 'Lsat_1_v5_gn_4_75761' => 'lsa', 'Lsat_1_v5_gn_5_10920' => 'lsa', 'Manes.02G099900' => 'mes', 'Manes.11G096200' => 'mes', 'Manes.12G007200' => 'mes', 'Manes.14G048300' => 'mes', 'Manes.17G114700' => 'mes', 'Mapoly0002s0070' => 'mpo', 'Mapoly0029s0099' => 'mpo', 'MBI07_g24742_MAGBIO' => 'mbi', 'MBI10_g27988_MAGBIO' => 'mbi', 'MBI11_g13057_MAGBIO' => 'mbi', 'MD02G1137200' => 'mdo', 'MD06G1137200' => 'mdo', 'MD07G1122300' => 'mdo', 'MD09G1078200' => 'mdo', 'MD13G1123700' => 'mdo', 'MD14G1151900' => 'mdo', 'MD17G1030900' => 'mdo', 'MD17G1068200' => 'mdo', 'MD17G1068600' => 'mdo', 'Medtr3g077540' => 'mtr', 'Medtr4g105530' => 'mtr', 'Medtr8g076580' => 'mtr', 'Medtr8g076590' => 'mtr', 'Medtr8g096410' => 'mtr', 'MELO3C016411.2' => 'cme', 'MELO3C017780.2' => 'cme', 'MELO3C022560.2' => 'cme', 'MELO3C026187.2' => 'cme', 'MELO3C026286.2' => 'cme', 'MELO3C032854.2' => 'cme', 'Migut.H02495' => 'egut', 'Migut.I00561' => 'egut', 'Migut.K01015' => 'egut', 'Migut.K01016' => 'egut', 'Migut.L00743' => 'egut', 'Migut.L00744' => 'egut', 'Migut.L00746' => 'egut', 'Migut.L00798' => 'egut', 'Migut.L00799' => 'egut', 'Migut.N02096' => 'egut', 'MSTRG.11259' => 'ama', 'MSTRG.23142' => 'ama', 'MSTRG.2499' => 'ama', 'Nitab4.5_0000003g0730' => 'nta', 'Nitab4.5_0000137g0020' => 'nta', 'Nitab4.5_0000721g0210' => 'nta', 'Nitab4.5_0000723g0050' => 'nta', 'Nitab4.5_0000913g0070' => 'nta', 'Nitab4.5_0001332g0040' => 'nta', 'Nitab4.5_0001771g0050' => 'nta', 'Nitab4.5_0001918g0050' => 'nta', 'Nitab4.5_0002686g0030' => 'nta', 'Nitab4.5_0003156g0020' => 'nta', 'Nitab4.5_0003383g0040' => 'nta', 'Nitab4.5_0003918g0010' => 'nta', 'Nitab4.5_0006760g0010' => 'nta', 'Nn1g05981' => 'nnu', 'Nn1g06288' => 'nnu', 'Nn3g16371' => 'nnu', 'Nn3g16786' => 'nnu', 'Nn4g22232' => 'nnu', 'Oeu005144.1' => 'oeu', 'Oeu005145.1' => 'oeu', 'Oeu011348.1' => 'oeu', 'Oeu016415.1' => 'oeu', 'Oeu023501.1' => 'oeu', 'Oeu044473.1' => 'oeu', 'Oeu048892.2' => 'oeu', 'Os01g0549200' => 'osa', 'Os02g0469300' => 'osa', 'Os04g0311100' => 'osa', 'Os06g0474900' => 'osa', 'Os10g0181700' => 'osa', 'Os11g0454800' => 'osa', 'Peaxi162Scf00037g00714' => 'pax', 'Peaxi162Scf00084g01217' => 'pax', 'Peaxi162Scf00257g00217' => 'pax', 'Peaxi162Scf00516g00215' => 'pax', 'Peaxi162Scf00689g00123' => 'pax', 'PGR044G2719' => 'pgr', 'PGR083G1360' => 'pgr', 'PGR102G2849' => 'pgr', 'PGR119G2534' => 'pgr', 'PGSC0003DMG400003538' => 'stu', 'PGSC0003DMG400028138' => 'stu', 'PGSC0003DMG400031732' => 'stu', 'PGSC0003DMG400038165' => 'stu', 'Phvul.002G284600' => 'pvu', 'Phvul.003G258200' => 'pvu', 'Phvul.009G176500' => 'pvu', 'Potri.003G167201' => 'ptr', 'Potri.005G118400' => 'ptr', 'Potri.012G089000' => 'ptr', 'Potri.012G102800' => 'ptr', 'Potri.015G079400' => 'ptr', 'Potri.015G100900' => 'ptr', 'Pp3c14_9810' => 'ppa', 'Pp3c15_10450' => 'ppa', 'Pp3c20_19150' => 'ppa', 'Pp3c23_12740' => 'ppa', 'Pp3c23_6310' => 'ppa', 'Pp3c24_3720' => 'ppa', 'Pp3c27_2580' => 'ppa', 'Pp3c9_8990' => 'ppa', 'PRCOL_00002854' => 'pco', 'Prupe.1G221200' => 'ppe', 'Prupe.3G289000' => 'ppe', 'Prupe.5G147000' => 'ppe', 'Prupe.6G157300' => 'ppe', 'Prupe.7G163400' => 'ppe', 'Psat0s2177g0040' => 'psa', 'Psat3g174760' => 'psa', 'Psat3g192160' => 'psa', 'Psat4g058520' => 'psa', 'Psat4g096840' => 'psa', 'Psat7g037320' => 'psa', 'PSO017G1274' => 'pso', 'PSO017G5166' => 'pso', 'PSO063G4558' => 'pso', 'PSO170G4458' => 'pso', 'PSO170G5005' => 'pso', 'PSO210G6156' => 'pso', 'PSO210G6635' => 'pso', 'PSO210G7397' => 'pso', 'PSO210G7700' => 'pso', 'PSO455G0035' => 'pso', 'PSO455G0180' => 'pso', 'PSO478G4515' => 'pso', 'PSO832G1305' => 'pso', 'PSO832G3489' => 'pso', 'QL02p075247' => 'qlo', 'QL03p051148' => 'qlo', 'QL05p010313' => 'qlo', 'QL06p034627' => 'qlo', 'QL10p001889' => 'qlo', 'QL10p010846' => 'qlo', 'RcHm_v2.0_Chr1g0350621' => 'rch', 'RcHm_v2.0_Chr1g0350641' => 'rch', 'RcHm_v2.0_Chr2g0092891' => 'rch', 'RcHm_v2.0_Chr2g0100251' => 'rch', 'RcHm_v2.0_Chr2g0158661' => 'rch', 'RcHm_v2.0_Chr2g0172741' => 'rch', 'RcHm_v2.0_Chr4g0429571' => 'rch', 'RcHm_v2.0_Chr5g0042471' => 'rch', 'RcHm_v2.0_Chr7g0189451' => 'rch', 'Rhsim08G0052000' => 'rsi', 'Rhsim08G0174400' => 'rsi', 'Rhsim08G0193200' => 'rsi', 'Rhsim10G0214800' => 'rsi', 'Rhsim10G0214900' => 'rsi', 'Rhsim10G0215000' => 'rsi', 'Rhsim12G0022900' => 'rsi', 'Rhsim12G0177500' => 'rsi', 'Rhsim12G0177700' => 'rsi', 'Sabra03G0122600' => 'sbr', 'Sabra05G0097400' => 'sbr', 'Sabra12G0064100' => 'sbr', 'Sabra15G0121300' => 'sbr', 'SalBow2G0642' => 'sbo', 'SalBow5G2667' => 'sbo', 'SalBow5G4873' => 'sbo', 'SalBow8G2395' => 'sbo', 'Sc03g0003290' => 'sci', 'Sc10g0010130' => 'sci', 'Sc22g0003650' => 'sci', 'Sed0001603' => 'sed', 'Sed0004259' => 'sed', 'Sed0006789' => 'sed', 'Sed0011838' => 'sed', 'Sed0012964' => 'sed', 'Sed0016383' => 'sed', 'Sed0019010' => 'sed', 'Sed0020188' => 'sed', 'SEGI_04702' => 'sgi', 'SEGI_17231' => 'sgi', 'SEGI_18877' => 'sgi', 'SEGI_25196' => 'sgi', 'SEGI_25515' => 'sgi', 'SEGI_28445' => 'sgi', 'SEGI_37452' => 'sgi', 'SGA_v2.0_scaffold188G40336' => 'sas', 'SGA_v2.0_scaffold228G43247' => 'sas', 'SGA_v2.0_scaffold280G46853' => 'sas', 'SGA_v2.0_scaffold34G13808' => 'sas', 'SGA_v2.0_scaffold40G15576' => 'sas', 'SGA_v2.0_scaffold611G53188' => 'sas', 'SGA_v2.0_scaffold78G25461' => 'sas', 'SGA_v2.0_scaffold90G27888' => 'sas', 'SHI08601' => 'shi', 'SHI08606' => 'shi', 'SHI17117' => 'shi', 'SHI17119' => 'shi', 'SMO118G0201' => 'smo', 'SMO169G0247' => 'smo', 'SMO176G0006' => 'smo', 'SMO176G0015' => 'smo', 'SMO202G0006' => 'smo', 'SMO240G0050' => 'smo', 'SMO286G0009' => 'smo', 'SMO338G0033' => 'smo', 'SMO356G0533' => 'smo', 'SMO364G0382' => 'smo', 'SMO367G0166' => 'smo', 'SMO367G1098' => 'smo', 'Solyc01g009920.3' => 'sly', 'Solyc01g099300.3' => 'sly', 'Solyc02g084700.3' => 'sly', 'Solyc03g097520.3' => 'sly', 'Solyc06g071580.3' => 'sly', 'Solyc10g081760.3' => 'sly', 'Sopen01g005480' => 'spe', 'Sopen01g042850' => 'spe', 'Sopen02g029370' => 'spe', 'Sopen03g028280' => 'spe', 'Sopen06g027870' => 'spe', 'Sopen10g032270' => 'spe', 'Sp5g18180' => 'spa', 'Sp6g12880' => 'spa', 'Sp6g30850' => 'spa', 'Sp7g22960' => 'spa', 'Sp7g34010' => 'spa', 'SpUn1326_0010' => 'spa', 'TAR371G0242' => 'tar', 'TAR622G0638' => 'tar', 'TAR628G1548' => 'tar', 'TAR629G1079' => 'tar', 'TAR629G3413' => 'tar', 'THA.LOC104804249' => 'tha', 'THA.LOC104808315' => 'tha', 'THA.LOC104809238' => 'tha', 'THA.LOC104825484' => 'tha', 'Thecc.01G025500' => 'tca', 'Thecc.03G015800' => 'tca', 'Thecc.03G018000' => 'tca', 'Thecc.03G134800' => 'tca', 'Thecc.04G014700' => 'tca', 'Thhalv10006991m.g' => 'esa', 'Thhalv10012707m.g' => 'esa', 'Thhalv10015739m.g' => 'esa', 'Thhalv10024553m.g' => 'esa', 'Thhalv10024673m.g' => 'esa', 'Thhalv10029187m.g' => 'esa', 'TPR.G12971' => 'tpr', 'TPR.G29396' => 'tpr', 'TPR.G33376' => 'tpr', 'TPR.G35508' => 'tpr', 'TPR.G35516' => 'tpr', 'TPR.G37317' => 'tpr', 'TPR.G37389' => 'tpr', 'TPR.G37523' => 'tpr', 'TPR.G559' => 'tpr', 'TWI14G0070' => 'twi', 'TWI14G0729' => 'twi', 'TWI18G0596' => 'twi', 'TWI39G0780' => 'twi', 'TWI39G0850' => 'twi', 'TWI73G1052' => 'twi', 'unitig_52.g17485' => 'ugi', 'unitig_61.g26355' => 'ugi', 'vmacro01040' => 'vma', 'vmacro16731' => 'vma', 'vmacro18270' => 'vma', 'vmacro19142' => 'vma', 'vmacro19407' => 'vma', 'vmacro19408' => 'vma', 'vmacro21899' => 'vma', 'vmacro21900' => 'vma', 'vmacro21901' => 'vma', 'VMungo0251G0490' => 'vmu', 'VMungo0251G1748' => 'vmu', 'VMungo1309G0421' => 'vmu', 'Zm00001eb086500' => 'zma', 'Zm00001eb150680' => 'zma', 'Zm00001eb162330' => 'zma', 'Zm00001eb203130' => 'zma', 'Zm00001eb369480' => 'zma', 'Zm00001eb382340' => 'zma', 'Zm00001eb416360' => 'zma' ), 'gf_id' => 'HOM05D000902', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000902' ), 'data_identifier' => 'HOM05D000902', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000902', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '663', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02470' => 'bna', 'A01p16260' => 'bna', 'A02p01680' => 'bna', 'A03p16600' => 'bna', 'A03p55660' => 'bna', 'A03p64160' => 'bna', 'A03p64170' => 'bna', 'A08p31900' => 'bna', 'A09p59530' => 'bna', 'A10p08230' => 'bna', 'A10p25090' => 'bna', 'Aa31LG3G7100' => 'aar', 'Aa31LG3G7110' => 'aar', 'Aa31LG6G13160' => 'aar', 'Aa31LG7G10770' => 'aar', 'Aa31LG7G3830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2723' => 'aag', 'Actinidia08045' => 'ach', 'Actinidia08888' => 'ach', 'Actinidia18333' => 'ach', 'Actinidia19334' => 'ach', 'Actinidia25552' => 'ach', 'Actinidia26089' => 'ach', 'Actinidia30615' => 'ach', 'Actinidia30616' => 'ach', 'Actinidia33083' => 'ach', 'Actinidia35762' => 'ach', 'Ah.02g110620' => 'amhyb', 'Ah.11g046390' => 'amhyb', 'AL1G31670' => 'aly', 'AL6G23730' => 'aly', 'AL7G14740' => 'aly', 'AL7G14750' => 'aly', 'AL7G14760' => 'aly', 'AL7G28220' => 'aly', 'AL8G24940' => 'aly', 'Aqoxy3G01665' => 'aox', 'Aqoxy3G02853' => 'aox', 'Aqoxy5G01513' => 'aox', 'Aqoxy5G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8SKA4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ75LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKDA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0LJZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7REX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZP4YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWX7I5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2QKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS0L9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPCD8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q161UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC7XCF' => 'arhy', 'AT1G19100' => 'ath', 'AT4G24970' => 'ath', 'AT4G36270' => 'ath', 'AT4G36280' => 'ath', 'AT4G36290' => 'ath', 'AT5G13130' => 'ath', 'AT5G50780' => 'ath', 'ATR0582G266' => 'atr', 'ATR0661G195' => 'atr', 'ATR1152G031' => 'atr', 'Atru.chr11.2382' => 'acertr', 'Atru.chr12.2337' => 'acertr', 'Atru.chr3.744' => 'acertr', 'Atru.chr6.1870' => 'acertr', 'Atru.chr9.2515' => 'acertr', 'AUR62004120' => 'cqu', 'AUR62005667' => 'cqu', 'AUR62007634' => 'cqu', 'AUR62008186' => 'cqu', 'AUR62008187' => 'cqu', 'AUR62008188' => 'cqu', 'AUR62027954' => 'cqu', 'AUR62028766' => 'cqu', 'AUR62028767' => 'cqu', 'AUR62028768' => 'cqu', 'AUR62028886' => 'cqu', 'AUR62029563' => 'cqu', 'AUR62038832' => 'cqu', 'BcaB01g04149' => 'bca', 'BcaB03g12940' => 'bca', 'BcaB03g13090' => 'bca', 'BcaB03g14466' => 'bca', 'BcaB05g24035' => 'bca', 'BcaC01g06050' => 'bca', 'BcaC04g19148' => 'bca', 'BcaC04g20761' => 'bca', 'BcaC06g32845' => 'bca', 'BcaC07g41274' => 'bca', 'BcaC09g50827' => 'bca', 'BcaNung00741' => 'bca', 'BcaNung00742' => 'bca', 'BcaNung01859' => 'bca', 'BcaNung03985' => 'bca', 'BcaNung03989' => 'bca', 'BcaNung05661' => 'bca', 'BolC1t00257H' => 'bol', 'BolC1t01956H' => 'bol', 'BolC2t06534H' => 'bol', 'BolC3t14334H' => 'bol', 'BolC5t30451H' => 'bol', 'BolC7t45880H' => 'bol', 'BolC7t46586H' => 'bol', 'BolC8t49301H' => 'bol', 'BolC8t51837H' => 'bol', 'BolC9t56822H' => 'bol', 'BolC9t59235H' => 'bol', 'BraA01t00234Z' => 'bra', 'BraA01t01563Z' => 'bra', 'BraA02t05147Z' => 'bra', 'BraA03t10947Z' => 'bra', 'BraA03t14633Z' => 'bra', 'BraA08t35112Z' => 'bra', 'BraA09t41330Z' => 'bra', 'BraA10t44570Z' => 'bra', 'C01p02670' => 'bna', 'C01p20260' => 'bna', 'C02p05890' => 'bna', 'C03p19530' => 'bna', 'C05p17470' => 'bna', 'C07p53900' => 'bna', 'C07p61630' => 'bna', 'C08p16800' => 'bna', 'C08p42810' => 'bna', 'C09p39480' => 'bna', 'C09p63980' => 'bna', 'CAN.G1001.7' => 'can', 'CAN.G1034.55' => 'can', 'CAN.G143.7' => 'can', 'CAN.G3340.1' => 'can', 'CAN.G358.19' => 'can', 'CAN.G373.2' => 'can', 'CAN.G674.16' => 'can', 'CAN.G674.17' => 'can', 'CAN.G674.18' => 'can', 'CAN.G732.2' => 'can', 'CAN.G732.3' => 'can', 'CAN.G993.39' => 'can', 'CANSAT01G2052' => 'cansat', 'CANSAT80G0070' => 'cansat', 'CANSAT80G0483' => 'cansat', 'CANSAT80G0625' => 'cansat', 'CARHR019690' => 'chi', 'CARHR080280' => 'chi', 'CARHR152750' => 'chi', 'CARHR152760' => 'chi', 'CARHR152770' => 'chi', 'CARHR200340' => 'chi', 'CARHR232370' => 'chi', 'CARHR244670' => 'chi', 'CARHR244680' => 'chi', 'CARHR257520' => 'chi', 'Carub.0001s1872' => 'cru', 'Carub.0006s1130' => 'cru', 'Carub.0007s0396' => 'cru', 'Carub.0007s0397' => 'cru', 'Carub.0007s1608' => 'cru', 'Carub.0008s1068' => 'cru', 'Carub.0008s1077' => 'cru', 'Ca_16158_v3' => 'car', 'Ca_17571_v3' => 'car', 'Ca_21936_v3' => 'car', 'Ca_22350_v3' => 'car', 'CBR_g22445' => 'cbr', 'CBR_g26290' => 'cbr', 'Cc04_g09610' => 'ccan', 'Cc04_g12280' => 'ccan', 'Cc07_g10230' => 'ccan', 'CDE02G0093' => 'cde', 'CDE02G0701' => 'cde', 'CDE04G1050' => 'cde', 'CDE05G1833' => 'cde', 'CDE05G3058' => 'cde', 'CDE05G3380' => 'cde', 'CDE06G0536' => 'cde', 'Cfa006923' => 'cfa', 'Cfa009402' => 'cfa', 'Cfa018751' => 'cfa', 'Cfa019164' => 'cfa', 'Cfa022935' => 'cfa', 'Ciclev10019081m.g' => 'ccl', 'Ciclev10025076m.g' => 'ccl', 'Ciclev10030712m.g' => 'ccl', 'Ciclev10033760m.g' => 'ccl', 'CiPaw.05G105600' => 'cil', 'CiPaw.08G136700' => 'cil', 'CiPaw.11G003900' => 'cil', 'CiPaw.11G023700' => 'cil', 'CiPaw.12G003700' => 'cil', 'ClCG06G017100' => 'cla', 'ClCG06G018110' => 'cla', 'ClCG07G008800' => 'cla', 'ClCG07G015330' => 'cla', 'COL.COLO4_13698' => 'col', 'COL.COLO4_16659' => 'col', 'COL.COLO4_21986' => 'col', 'COL.COLO4_24049' => 'col', 'COL.COLO4_29061' => 'col', 'COL.COLO4_29075' => 'col', 'COL.COLO4_30094' => 'col', 'Cpa.g.c33689' => 'cpa', 'Cpa.g.sc108.39' => 'cpa', 'Cpa.g.sc108.41' => 'cpa', 'Cpa.g.sc1163.1' => 'cpa', 'Cpa.g.sc4.155' => 'cpa', 'Cpa.g.sc6.194' => 'cpa', 'CsaV3_1G000340' => 'csa', 'CsaV3_1G001400' => 'csa', 'CsaV3_4G002220' => 'csa', 'CsaV3_4G005370' => 'csa', 'CSS0007487' => 'camsi', 'CSS0008066' => 'camsi', 'CSS0009120' => 'camsi', 'CSS0015512' => 'camsi', 'CSS0022409' => 'camsi', 'CSS0025358' => 'camsi', 'CSS0044547' => 'camsi', 'DCAR_013057' => 'dca', 'DCAR_015058' => 'dca', 'DCAR_016027' => 'dca', 'DCAR_017327' => 'dca', 'DCAR_020743' => 'dca', 'DCAR_026157' => 'dca', 'DCAR_032339' => 'dca', 'DCAR_032340' => 'dca', 'Dinv11200' => 'din', 'Dinv11201' => 'din', 'Dinv20631' => 'din', 'Dinv23182' => 'din', 'Dinv33466' => 'din', 'Dinv33583' => 'din', 'Dinv38565' => 'din', 'Duzib068G0200' => 'dzi', 'Duzib147G0132' => 'dzi', 'Duzib147G0635' => 'dzi', 'Duzib205G1670' => 'dzi', 'Duzib251G0606' => 'dzi', 'ECA232G3336' => 'eca', 'ECA232G3763' => 'eca', 'ECA232G4845' => 'eca', 'ECA234G1607' => 'eca', 'ECA246G0932' => 'eca', 'ECA247G0781' => 'eca', 'ECA247G1932' => 'eca', 'ECA247G2079' => 'eca', 'ECA247G3338' => 'eca', 'ECA247G4115' => 'eca', 'EL10Ac3g06552' => 'bvu', 'EL10Ac5g10721' => 'bvu', 'EL10Ac5g10722' => 'bvu', 'EL10Ac5g10723' => 'bvu', 'EL10Ac5g11361' => 'bvu', 'EL10Ac6g13553' => 'bvu', 'EL10As8g23872' => 'bvu', 'Eucgr.B00250' => 'egr', 'Eucgr.B00251' => 'egr', 'Eucgr.B03533' => 'egr', 'Eucgr.I02381' => 'egr', 'Eucgr.K02700' => 'egr', 'FAN02G0174' => 'fan', 'FAN02G3146' => 'fan', 'FAN04G1672' => 'fan', 'FAN04G2273' => 'fan', 'FAN05G2791' => 'fan', 'FAN05G4035' => 'fan', 'FAN07G0834' => 'fan', 'FAN08G1198' => 'fan', 'FAN09G4182' => 'fan', 'FAN12G0496' => 'fan', 'FAN13G1027' => 'fan', 'FAN13G2951' => 'fan', 'FAN14G0705' => 'fan', 'FAN14G0720' => 'fan', 'FAN17G0201' => 'fan', 'FAN17G2665' => 'fan', 'FAN18G1456' => 'fan', 'FAN18G1525' => 'fan', 'FAN18G3500' => 'fan', 'FAN28G2670' => 'fan', 'FvH4_1g12391' => 'fve', 'FvH4_4g23220' => 'fve', 'FvH4_5g08810' => 'fve', 'FvH4_5g28960' => 'fve', 'FvH4_6g42820' => 'fve', 'FvH4_6g51110' => 'fve', 'Glyma.02G051802' => 'gma', 'Glyma.04G185300' => 'gma', 'Glyma.05G202900' => 'gma', 'Glyma.08G010300' => 'gma', 'Glyma.16G131900' => 'gma', 'Glyma.17G087900' => 'gma', 'Gohir.A07G048600' => 'ghi', 'Gohir.A11G179000' => 'ghi', 'Gohir.A12G140900' => 'ghi', 'Gohir.A12G140950' => 'ghi', 'Gohir.A12G191700' => 'ghi', 'Gohir.A13G086300' => 'ghi', 'Gohir.D07G052900' => 'ghi', 'Gohir.D11G186600' => 'ghi', 'Gohir.D12G145575' => 'ghi', 'Gohir.D12G145650' => 'ghi', 'Gohir.D12G145725' => 'ghi', 'Gohir.D12G194050' => 'ghi', 'Gohir.D13G091800' => 'ghi', 'Gorai.001G055900' => 'gra', 'Gorai.007G198400' => 'gra', 'Gorai.008G157000' => 'gra', 'Gorai.008G157100' => 'gra', 'Gorai.008G208700' => 'gra', 'Gorai.010G138700' => 'gra', 'GSVIVG01000977001' => 'vvi', 'GSVIVG01007708001' => 'vvi', 'GSVIVG01008587001' => 'vvi', 'GSVIVG01018849001' => 'vvi', 'GSVIVG01032432001' => 'vvi', 'HanXRQChr02g0034131' => 'han', 'HanXRQChr02g0035981' => 'han', 'HanXRQChr02g0035991' => 'han', 'HanXRQChr05g0155611' => 'han', 'HanXRQChr05g0155621' => 'han', 'HanXRQChr08g0236501' => 'han', 'HanXRQChr09g0261321' => 'han', 'HanXRQChr09g0272081' => 'han', 'HanXRQChr10g0310741' => 'han', 'HanXRQChr11g0325591' => 'han', 'HanXRQChr12g0385691' => 'han', 'HanXRQChr13g0387801' => 'han', 'HanXRQChr15g0463011' => 'han', 'Haze_03826' => 'cav', 'Haze_03827' => 'cav', 'Haze_07183' => 'cav', 'Haze_07537' => 'cav', 'Haze_07539' => 'cav', 'Haze_12461' => 'cav', 'Haze_16115' => 'cav', 'Haze_16808' => 'cav', 'Haze_18531' => 'cav', 'Hma1.2p1_0046F.1_g026700' => 'hma', 'Hma1.2p1_0046F.1_g026710' => 'hma', 'Hma1.2p1_0168F.1_g074340' => 'hma', 'Hma1.2p1_0266F.1_g107030' => 'hma', 'Hma1.2p1_0266F.1_g107060' => 'hma', 'Hma1.2p1_0275F.1_g110510' => 'hma', 'Hma1.2p1_0592F.1_g185490' => 'hma', 'Hma1.2p1_0592F.1_g185500' => 'hma', 'Hma1.2p1_0592F.1_g185510' => 'hma', 'Hma1.2p1_0592F.1_g185520' => 'hma', 'Hma1.2p1_0592F.1_g185530' => 'hma', 'Hma1.2p1_0818F.1_g223450' => 'hma', 'HPP92_009708' => 'vpl', 'HPP92_009793' => 'vpl', 'HPP92_009796' => 'vpl', 'HPP92_009797' => 'vpl', 'HPP92_014940' => 'vpl', 'HPP92_014988' => 'vpl', 'Hund02463' => 'sun', 'Hund02760' => 'sun', 'Hund05071' => 'sun', 'Hund10108' => 'sun', 'Hund11204' => 'sun', 'Hund14016' => 'sun', 'Hund16464' => 'sun', 'Lalb_Chr09g0333391' => 'lal', 'Lalb_Chr11g0070461' => 'lal', 'Lalb_Chr12g0201671' => 'lal', 'Lalb_Chr13g0297161' => 'lal', 'Lj1g0002823' => 'lja', 'Lj3C1074T6' => 'lonja', 'Lj4A212T28' => 'lonja', 'Lj4g0005516' => 'lja', 'Lj4g0013705' => 'lja', 'Lj4g0027865' => 'lja', 'Lj5C92G16' => 'lonja', 'Lj5C92T12' => 'lonja', 'Lj7C596T3' => 'lonja', 'Lj9A446G59' => 'lonja', 'Lj9A482G21' => 'lonja', 'Lsat_1_v5_gn_1_28261' => 'lsa', 'Lsat_1_v5_gn_1_28281' => 'lsa', 'Lsat_1_v5_gn_1_32721' => 'lsa', 'Lsat_1_v5_gn_4_151760' => 'lsa', 'Lsat_1_v5_gn_4_2120' => 'lsa', 'Lsat_1_v5_gn_4_75761' => 'lsa', 'Lsat_1_v5_gn_5_10920' => 'lsa', 'Manes.02G099900' => 'mes', 'Manes.11G096200' => 'mes', 'Manes.12G007200' => 'mes', 'Manes.14G048300' => 'mes', 'Manes.17G114700' => 'mes', 'Mapoly0002s0070' => 'mpo', 'Mapoly0029s0099' => 'mpo', 'MBI07_g24742_MAGBIO' => 'mbi', 'MBI10_g27988_MAGBIO' => 'mbi', 'MBI11_g13057_MAGBIO' => 'mbi', 'MD02G1137200' => 'mdo', 'MD06G1137200' => 'mdo', 'MD07G1122300' => 'mdo', 'MD09G1078200' => 'mdo', 'MD13G1123700' => 'mdo', 'MD14G1151900' => 'mdo', 'MD17G1030900' => 'mdo', 'MD17G1068200' => 'mdo', 'MD17G1068600' => 'mdo', 'Medtr3g077540' => 'mtr', 'Medtr4g105530' => 'mtr', 'Medtr8g076580' => 'mtr', 'Medtr8g076590' => 'mtr', 'Medtr8g096410' => 'mtr', 'MELO3C016411.2' => 'cme', 'MELO3C017780.2' => 'cme', 'MELO3C022560.2' => 'cme', 'MELO3C026187.2' => 'cme', 'MELO3C026286.2' => 'cme', 'MELO3C032854.2' => 'cme', 'Migut.H02495' => 'egut', 'Migut.I00561' => 'egut', 'Migut.K01015' => 'egut', 'Migut.K01016' => 'egut', 'Migut.L00743' => 'egut', 'Migut.L00744' => 'egut', 'Migut.L00746' => 'egut', 'Migut.L00798' => 'egut', 'Migut.L00799' => 'egut', 'Migut.N02096' => 'egut', 'MSTRG.11259' => 'ama', 'MSTRG.23142' => 'ama', 'MSTRG.2499' => 'ama', 'Nitab4.5_0000003g0730' => 'nta', 'Nitab4.5_0000137g0020' => 'nta', 'Nitab4.5_0000721g0210' => 'nta', 'Nitab4.5_0000723g0050' => 'nta', 'Nitab4.5_0000913g0070' => 'nta', 'Nitab4.5_0001332g0040' => 'nta', 'Nitab4.5_0001771g0050' => 'nta', 'Nitab4.5_0001918g0050' => 'nta', 'Nitab4.5_0002686g0030' => 'nta', 'Nitab4.5_0003156g0020' => 'nta', 'Nitab4.5_0003383g0040' => 'nta', 'Nitab4.5_0003918g0010' => 'nta', 'Nitab4.5_0006760g0010' => 'nta', 'Nn1g05981' => 'nnu', 'Nn1g06288' => 'nnu', 'Nn3g16371' => 'nnu', 'Nn3g16786' => 'nnu', 'Nn4g22232' => 'nnu', 'Oeu005144.1' => 'oeu', 'Oeu005145.1' => 'oeu', 'Oeu011348.1' => 'oeu', 'Oeu016415.1' => 'oeu', 'Oeu023501.1' => 'oeu', 'Oeu044473.1' => 'oeu', 'Oeu048892.2' => 'oeu', 'Os01g0549200' => 'osa', 'Os02g0469300' => 'osa', 'Os04g0311100' => 'osa', 'Os06g0474900' => 'osa', 'Os10g0181700' => 'osa', 'Os11g0454800' => 'osa', 'Peaxi162Scf00037g00714' => 'pax', 'Peaxi162Scf00084g01217' => 'pax', 'Peaxi162Scf00257g00217' => 'pax', 'Peaxi162Scf00516g00215' => 'pax', 'Peaxi162Scf00689g00123' => 'pax', 'PGR044G2719' => 'pgr', 'PGR083G1360' => 'pgr', 'PGR102G2849' => 'pgr', 'PGR119G2534' => 'pgr', 'PGSC0003DMG400003538' => 'stu', 'PGSC0003DMG400028138' => 'stu', 'PGSC0003DMG400031732' => 'stu', 'PGSC0003DMG400038165' => 'stu', 'Phvul.002G284600' => 'pvu', 'Phvul.003G258200' => 'pvu', 'Phvul.009G176500' => 'pvu', 'Potri.003G167201' => 'ptr', 'Potri.005G118400' => 'ptr', 'Potri.012G089000' => 'ptr', 'Potri.012G102800' => 'ptr', 'Potri.015G079400' => 'ptr', 'Potri.015G100900' => 'ptr', 'Pp3c14_9810' => 'ppa', 'Pp3c15_10450' => 'ppa', 'Pp3c20_19150' => 'ppa', 'Pp3c23_12740' => 'ppa', 'Pp3c23_6310' => 'ppa', 'Pp3c24_3720' => 'ppa', 'Pp3c27_2580' => 'ppa', 'Pp3c9_8990' => 'ppa', 'PRCOL_00002854' => 'pco', 'Prupe.1G221200' => 'ppe', 'Prupe.3G289000' => 'ppe', 'Prupe.5G147000' => 'ppe', 'Prupe.6G157300' => 'ppe', 'Prupe.7G163400' => 'ppe', 'Psat0s2177g0040' => 'psa', 'Psat3g174760' => 'psa', 'Psat3g192160' => 'psa', 'Psat4g058520' => 'psa', 'Psat4g096840' => 'psa', 'Psat7g037320' => 'psa', 'PSO017G1274' => 'pso', 'PSO017G5166' => 'pso', 'PSO063G4558' => 'pso', 'PSO170G4458' => 'pso', 'PSO170G5005' => 'pso', 'PSO210G6156' => 'pso', 'PSO210G6635' => 'pso', 'PSO210G7397' => 'pso', 'PSO210G7700' => 'pso', 'PSO455G0035' => 'pso', 'PSO455G0180' => 'pso', 'PSO478G4515' => 'pso', 'PSO832G1305' => 'pso', 'PSO832G3489' => 'pso', 'QL02p075247' => 'qlo', 'QL03p051148' => 'qlo', 'QL05p010313' => 'qlo', 'QL06p034627' => 'qlo', 'QL10p001889' => 'qlo', 'QL10p010846' => 'qlo', 'RcHm_v2.0_Chr1g0350621' => 'rch', 'RcHm_v2.0_Chr1g0350641' => 'rch', 'RcHm_v2.0_Chr2g0092891' => 'rch', 'RcHm_v2.0_Chr2g0100251' => 'rch', 'RcHm_v2.0_Chr2g0158661' => 'rch', 'RcHm_v2.0_Chr2g0172741' => 'rch', 'RcHm_v2.0_Chr4g0429571' => 'rch', 'RcHm_v2.0_Chr5g0042471' => 'rch', 'RcHm_v2.0_Chr7g0189451' => 'rch', 'Rhsim08G0052000' => 'rsi', 'Rhsim08G0174400' => 'rsi', 'Rhsim08G0193200' => 'rsi', 'Rhsim10G0214800' => 'rsi', 'Rhsim10G0214900' => 'rsi', 'Rhsim10G0215000' => 'rsi', 'Rhsim12G0022900' => 'rsi', 'Rhsim12G0177500' => 'rsi', 'Rhsim12G0177700' => 'rsi', 'Sabra03G0122600' => 'sbr', 'Sabra05G0097400' => 'sbr', 'Sabra12G0064100' => 'sbr', 'Sabra15G0121300' => 'sbr', 'SalBow2G0642' => 'sbo', 'SalBow5G2667' => 'sbo', 'SalBow5G4873' => 'sbo', 'SalBow8G2395' => 'sbo', 'Sc03g0003290' => 'sci', 'Sc10g0010130' => 'sci', 'Sc22g0003650' => 'sci', 'Sed0001603' => 'sed', 'Sed0004259' => 'sed', 'Sed0006789' => 'sed', 'Sed0011838' => 'sed', 'Sed0012964' => 'sed', 'Sed0016383' => 'sed', 'Sed0019010' => 'sed', 'Sed0020188' => 'sed', 'SEGI_04702' => 'sgi', 'SEGI_17231' => 'sgi', 'SEGI_18877' => 'sgi', 'SEGI_25196' => 'sgi', 'SEGI_25515' => 'sgi', 'SEGI_28445' => 'sgi', 'SEGI_37452' => 'sgi', 'SGA_v2.0_scaffold188G40336' => 'sas', 'SGA_v2.0_scaffold228G43247' => 'sas', 'SGA_v2.0_scaffold280G46853' => 'sas', 'SGA_v2.0_scaffold34G13808' => 'sas', 'SGA_v2.0_scaffold40G15576' => 'sas', 'SGA_v2.0_scaffold611G53188' => 'sas', 'SGA_v2.0_scaffold78G25461' => 'sas', 'SGA_v2.0_scaffold90G27888' => 'sas', 'SHI08601' => 'shi', 'SHI08606' => 'shi', 'SHI17117' => 'shi', 'SHI17119' => 'shi', 'SMO118G0201' => 'smo', 'SMO169G0247' => 'smo', 'SMO176G0006' => 'smo', 'SMO176G0015' => 'smo', 'SMO202G0006' => 'smo', 'SMO240G0050' => 'smo', 'SMO286G0009' => 'smo', 'SMO338G0033' => 'smo', 'SMO356G0533' => 'smo', 'SMO364G0382' => 'smo', 'SMO367G0166' => 'smo', 'SMO367G1098' => 'smo', 'Solyc01g009920.3' => 'sly', 'Solyc01g099300.3' => 'sly', 'Solyc02g084700.3' => 'sly', 'Solyc03g097520.3' => 'sly', 'Solyc06g071580.3' => 'sly', 'Solyc10g081760.3' => 'sly', 'Sopen01g005480' => 'spe', 'Sopen01g042850' => 'spe', 'Sopen02g029370' => 'spe', 'Sopen03g028280' => 'spe', 'Sopen06g027870' => 'spe', 'Sopen10g032270' => 'spe', 'Sp5g18180' => 'spa', 'Sp6g12880' => 'spa', 'Sp6g30850' => 'spa', 'Sp7g22960' => 'spa', 'Sp7g34010' => 'spa', 'SpUn1326_0010' => 'spa', 'TAR371G0242' => 'tar', 'TAR622G0638' => 'tar', 'TAR628G1548' => 'tar', 'TAR629G1079' => 'tar', 'TAR629G3413' => 'tar', 'THA.LOC104804249' => 'tha', 'THA.LOC104808315' => 'tha', 'THA.LOC104809238' => 'tha', 'THA.LOC104825484' => 'tha', 'Thecc.01G025500' => 'tca', 'Thecc.03G015800' => 'tca', 'Thecc.03G018000' => 'tca', 'Thecc.03G134800' => 'tca', 'Thecc.04G014700' => 'tca', 'Thhalv10006991m.g' => 'esa', 'Thhalv10012707m.g' => 'esa', 'Thhalv10015739m.g' => 'esa', 'Thhalv10024553m.g' => 'esa', 'Thhalv10024673m.g' => 'esa', 'Thhalv10029187m.g' => 'esa', 'TPR.G12971' => 'tpr', 'TPR.G29396' => 'tpr', 'TPR.G33376' => 'tpr', 'TPR.G35508' => 'tpr', 'TPR.G35516' => 'tpr', 'TPR.G37317' => 'tpr', 'TPR.G37389' => 'tpr', 'TPR.G37523' => 'tpr', 'TPR.G559' => 'tpr', 'TWI14G0070' => 'twi', 'TWI14G0729' => 'twi', 'TWI18G0596' => 'twi', 'TWI39G0780' => 'twi', 'TWI39G0850' => 'twi', 'TWI73G1052' => 'twi', 'unitig_52.g17485' => 'ugi', 'unitig_61.g26355' => 'ugi', 'vmacro01040' => 'vma', 'vmacro16731' => 'vma', 'vmacro18270' => 'vma', 'vmacro19142' => 'vma', 'vmacro19407' => 'vma', 'vmacro19408' => 'vma', 'vmacro21899' => 'vma', 'vmacro21900' => 'vma', 'vmacro21901' => 'vma', 'VMungo0251G0490' => 'vmu', 'VMungo0251G1748' => 'vmu', 'VMungo1309G0421' => 'vmu', 'Zm00001eb086500' => 'zma', 'Zm00001eb150680' => 'zma', 'Zm00001eb162330' => 'zma', 'Zm00001eb203130' => 'zma', 'Zm00001eb369480' => 'zma', 'Zm00001eb382340' => 'zma', 'Zm00001eb416360' => 'zma' ) $gf_id = 'HOM05D000902' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000902' ) $data_identifier = 'HOM05D000902' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 13, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 10, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 6, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 9, 'hma' => (int) 12, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 4, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 6, 'ppa' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 6, 'rch' => (int) 9, 'rsi' => (int) 9, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 12, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 3, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416360' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000902', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '663', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02470' => 'bna', 'A01p16260' => 'bna', 'A02p01680' => 'bna', 'A03p16600' => 'bna', 'A03p55660' => 'bna', 'A03p64160' => 'bna', 'A03p64170' => 'bna', 'A08p31900' => 'bna', 'A09p59530' => 'bna', 'A10p08230' => 'bna', 'A10p25090' => 'bna', 'Aa31LG3G7100' => 'aar', 'Aa31LG3G7110' => 'aar', 'Aa31LG6G13160' => 'aar', 'Aa31LG7G10770' => 'aar', 'Aa31LG7G3830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2723' => 'aag', 'Actinidia08045' => 'ach', 'Actinidia08888' => 'ach', 'Actinidia18333' => 'ach', 'Actinidia19334' => 'ach', 'Actinidia25552' => 'ach', 'Actinidia26089' => 'ach', 'Actinidia30615' => 'ach', 'Actinidia30616' => 'ach', 'Actinidia33083' => 'ach', 'Actinidia35762' => 'ach', 'Ah.02g110620' => 'amhyb', 'Ah.11g046390' => 'amhyb', 'AL1G31670' => 'aly', 'AL6G23730' => 'aly', 'AL7G14740' => 'aly', 'AL7G14750' => 'aly', 'AL7G14760' => 'aly', 'AL7G28220' => 'aly', 'AL8G24940' => 'aly', 'Aqoxy3G01665' => 'aox', 'Aqoxy3G02853' => 'aox', 'Aqoxy5G01513' => 'aox', 'Aqoxy5G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8SKA4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ75LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKDA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0LJZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7REX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZP4YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWX7I5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2QKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS0L9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPCD8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q161UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC7XCF' => 'arhy', 'AT1G19100' => 'ath', 'AT4G24970' => 'ath', 'AT4G36270' => 'ath', 'AT4G36280' => 'ath', 'AT4G36290' => 'ath', 'AT5G13130' => 'ath', 'AT5G50780' => 'ath', 'ATR0582G266' => 'atr', 'ATR0661G195' => 'atr', 'ATR1152G031' => 'atr', 'Atru.chr11.2382' => 'acertr', 'Atru.chr12.2337' => 'acertr', 'Atru.chr3.744' => 'acertr', 'Atru.chr6.1870' => 'acertr', 'Atru.chr9.2515' => 'acertr', 'AUR62004120' => 'cqu', 'AUR62005667' => 'cqu', 'AUR62007634' => 'cqu', 'AUR62008186' => 'cqu', 'AUR62008187' => 'cqu', 'AUR62008188' => 'cqu', 'AUR62027954' => 'cqu', 'AUR62028766' => 'cqu', 'AUR62028767' => 'cqu', 'AUR62028768' => 'cqu', 'AUR62028886' => 'cqu', 'AUR62029563' => 'cqu', 'AUR62038832' => 'cqu', 'BcaB01g04149' => 'bca', 'BcaB03g12940' => 'bca', 'BcaB03g13090' => 'bca', 'BcaB03g14466' => 'bca', 'BcaB05g24035' => 'bca', 'BcaC01g06050' => 'bca', 'BcaC04g19148' => 'bca', 'BcaC04g20761' => 'bca', 'BcaC06g32845' => 'bca', 'BcaC07g41274' => 'bca', 'BcaC09g50827' => 'bca', 'BcaNung00741' => 'bca', 'BcaNung00742' => 'bca', 'BcaNung01859' => 'bca', 'BcaNung03985' => 'bca', 'BcaNung03989' => 'bca', 'BcaNung05661' => 'bca', 'BolC1t00257H' => 'bol', 'BolC1t01956H' => 'bol', 'BolC2t06534H' => 'bol', 'BolC3t14334H' => 'bol', 'BolC5t30451H' => 'bol', 'BolC7t45880H' => 'bol', 'BolC7t46586H' => 'bol', 'BolC8t49301H' => 'bol', 'BolC8t51837H' => 'bol', 'BolC9t56822H' => 'bol', 'BolC9t59235H' => 'bol', 'BraA01t00234Z' => 'bra', 'BraA01t01563Z' => 'bra', 'BraA02t05147Z' => 'bra', 'BraA03t10947Z' => 'bra', 'BraA03t14633Z' => 'bra', 'BraA08t35112Z' => 'bra', 'BraA09t41330Z' => 'bra', 'BraA10t44570Z' => 'bra', 'C01p02670' => 'bna', 'C01p20260' => 'bna', 'C02p05890' => 'bna', 'C03p19530' => 'bna', 'C05p17470' => 'bna', 'C07p53900' => 'bna', 'C07p61630' => 'bna', 'C08p16800' => 'bna', 'C08p42810' => 'bna', 'C09p39480' => 'bna', 'C09p63980' => 'bna', 'CAN.G1001.7' => 'can', 'CAN.G1034.55' => 'can', 'CAN.G143.7' => 'can', 'CAN.G3340.1' => 'can', 'CAN.G358.19' => 'can', 'CAN.G373.2' => 'can', 'CAN.G674.16' => 'can', 'CAN.G674.17' => 'can', 'CAN.G674.18' => 'can', 'CAN.G732.2' => 'can', 'CAN.G732.3' => 'can', 'CAN.G993.39' => 'can', 'CANSAT01G2052' => 'cansat', 'CANSAT80G0070' => 'cansat', 'CANSAT80G0483' => 'cansat', 'CANSAT80G0625' => 'cansat', 'CARHR019690' => 'chi', 'CARHR080280' => 'chi', 'CARHR152750' => 'chi', 'CARHR152760' => 'chi', 'CARHR152770' => 'chi', 'CARHR200340' => 'chi', 'CARHR232370' => 'chi', 'CARHR244670' => 'chi', 'CARHR244680' => 'chi', 'CARHR257520' => 'chi', 'Carub.0001s1872' => 'cru', 'Carub.0006s1130' => 'cru', 'Carub.0007s0396' => 'cru', 'Carub.0007s0397' => 'cru', 'Carub.0007s1608' => 'cru', 'Carub.0008s1068' => 'cru', 'Carub.0008s1077' => 'cru', 'Ca_16158_v3' => 'car', 'Ca_17571_v3' => 'car', 'Ca_21936_v3' => 'car', 'Ca_22350_v3' => 'car', 'CBR_g22445' => 'cbr', 'CBR_g26290' => 'cbr', 'Cc04_g09610' => 'ccan', 'Cc04_g12280' => 'ccan', 'Cc07_g10230' => 'ccan', 'CDE02G0093' => 'cde', 'CDE02G0701' => 'cde', 'CDE04G1050' => 'cde', 'CDE05G1833' => 'cde', 'CDE05G3058' => 'cde', 'CDE05G3380' => 'cde', 'CDE06G0536' => 'cde', 'Cfa006923' => 'cfa', 'Cfa009402' => 'cfa', 'Cfa018751' => 'cfa', 'Cfa019164' => 'cfa', 'Cfa022935' => 'cfa', 'Ciclev10019081m.g' => 'ccl', 'Ciclev10025076m.g' => 'ccl', 'Ciclev10030712m.g' => 'ccl', 'Ciclev10033760m.g' => 'ccl', 'CiPaw.05G105600' => 'cil', 'CiPaw.08G136700' => 'cil', 'CiPaw.11G003900' => 'cil', 'CiPaw.11G023700' => 'cil', 'CiPaw.12G003700' => 'cil', 'ClCG06G017100' => 'cla', 'ClCG06G018110' => 'cla', 'ClCG07G008800' => 'cla', 'ClCG07G015330' => 'cla', 'COL.COLO4_13698' => 'col', 'COL.COLO4_16659' => 'col', 'COL.COLO4_21986' => 'col', 'COL.COLO4_24049' => 'col', 'COL.COLO4_29061' => 'col', 'COL.COLO4_29075' => 'col', 'COL.COLO4_30094' => 'col', 'Cpa.g.c33689' => 'cpa', 'Cpa.g.sc108.39' => 'cpa', 'Cpa.g.sc108.41' => 'cpa', 'Cpa.g.sc1163.1' => 'cpa', 'Cpa.g.sc4.155' => 'cpa', 'Cpa.g.sc6.194' => 'cpa', 'CsaV3_1G000340' => 'csa', 'CsaV3_1G001400' => 'csa', 'CsaV3_4G002220' => 'csa', 'CsaV3_4G005370' => 'csa', 'CSS0007487' => 'camsi', 'CSS0008066' => 'camsi', 'CSS0009120' => 'camsi', 'CSS0015512' => 'camsi', 'CSS0022409' => 'camsi', 'CSS0025358' => 'camsi', 'CSS0044547' => 'camsi', 'DCAR_013057' => 'dca', 'DCAR_015058' => 'dca', 'DCAR_016027' => 'dca', 'DCAR_017327' => 'dca', 'DCAR_020743' => 'dca', 'DCAR_026157' => 'dca', 'DCAR_032339' => 'dca', 'DCAR_032340' => 'dca', 'Dinv11200' => 'din', 'Dinv11201' => 'din', 'Dinv20631' => 'din', 'Dinv23182' => 'din', 'Dinv33466' => 'din', 'Dinv33583' => 'din', 'Dinv38565' => 'din', 'Duzib068G0200' => 'dzi', 'Duzib147G0132' => 'dzi', 'Duzib147G0635' => 'dzi', 'Duzib205G1670' => 'dzi', 'Duzib251G0606' => 'dzi', 'ECA232G3336' => 'eca', 'ECA232G3763' => 'eca', 'ECA232G4845' => 'eca', 'ECA234G1607' => 'eca', 'ECA246G0932' => 'eca', 'ECA247G0781' => 'eca', 'ECA247G1932' => 'eca', 'ECA247G2079' => 'eca', 'ECA247G3338' => 'eca', 'ECA247G4115' => 'eca', 'EL10Ac3g06552' => 'bvu', 'EL10Ac5g10721' => 'bvu', 'EL10Ac5g10722' => 'bvu', 'EL10Ac5g10723' => 'bvu', 'EL10Ac5g11361' => 'bvu', 'EL10Ac6g13553' => 'bvu', 'EL10As8g23872' => 'bvu', 'Eucgr.B00250' => 'egr', 'Eucgr.B00251' => 'egr', 'Eucgr.B03533' => 'egr', 'Eucgr.I02381' => 'egr', 'Eucgr.K02700' => 'egr', 'FAN02G0174' => 'fan', 'FAN02G3146' => 'fan', 'FAN04G1672' => 'fan', 'FAN04G2273' => 'fan', 'FAN05G2791' => 'fan', 'FAN05G4035' => 'fan', 'FAN07G0834' => 'fan', 'FAN08G1198' => 'fan', 'FAN09G4182' => 'fan', 'FAN12G0496' => 'fan', 'FAN13G1027' => 'fan', 'FAN13G2951' => 'fan', 'FAN14G0705' => 'fan', 'FAN14G0720' => 'fan', 'FAN17G0201' => 'fan', 'FAN17G2665' => 'fan', 'FAN18G1456' => 'fan', 'FAN18G1525' => 'fan', 'FAN18G3500' => 'fan', 'FAN28G2670' => 'fan', 'FvH4_1g12391' => 'fve', 'FvH4_4g23220' => 'fve', 'FvH4_5g08810' => 'fve', 'FvH4_5g28960' => 'fve', 'FvH4_6g42820' => 'fve', 'FvH4_6g51110' => 'fve', 'Glyma.02G051802' => 'gma', 'Glyma.04G185300' => 'gma', 'Glyma.05G202900' => 'gma', 'Glyma.08G010300' => 'gma', 'Glyma.16G131900' => 'gma', 'Glyma.17G087900' => 'gma', 'Gohir.A07G048600' => 'ghi', 'Gohir.A11G179000' => 'ghi', 'Gohir.A12G140900' => 'ghi', 'Gohir.A12G140950' => 'ghi', 'Gohir.A12G191700' => 'ghi', 'Gohir.A13G086300' => 'ghi', 'Gohir.D07G052900' => 'ghi', 'Gohir.D11G186600' => 'ghi', 'Gohir.D12G145575' => 'ghi', 'Gohir.D12G145650' => 'ghi', 'Gohir.D12G145725' => 'ghi', 'Gohir.D12G194050' => 'ghi', 'Gohir.D13G091800' => 'ghi', 'Gorai.001G055900' => 'gra', 'Gorai.007G198400' => 'gra', 'Gorai.008G157000' => 'gra', 'Gorai.008G157100' => 'gra', 'Gorai.008G208700' => 'gra', 'Gorai.010G138700' => 'gra', 'GSVIVG01000977001' => 'vvi', 'GSVIVG01007708001' => 'vvi', 'GSVIVG01008587001' => 'vvi', 'GSVIVG01018849001' => 'vvi', 'GSVIVG01032432001' => 'vvi', 'HanXRQChr02g0034131' => 'han', 'HanXRQChr02g0035981' => 'han', 'HanXRQChr02g0035991' => 'han', 'HanXRQChr05g0155611' => 'han', 'HanXRQChr05g0155621' => 'han', 'HanXRQChr08g0236501' => 'han', 'HanXRQChr09g0261321' => 'han', 'HanXRQChr09g0272081' => 'han', 'HanXRQChr10g0310741' => 'han', 'HanXRQChr11g0325591' => 'han', 'HanXRQChr12g0385691' => 'han', 'HanXRQChr13g0387801' => 'han', 'HanXRQChr15g0463011' => 'han', 'Haze_03826' => 'cav', 'Haze_03827' => 'cav', 'Haze_07183' => 'cav', 'Haze_07537' => 'cav', 'Haze_07539' => 'cav', 'Haze_12461' => 'cav', 'Haze_16115' => 'cav', 'Haze_16808' => 'cav', 'Haze_18531' => 'cav', 'Hma1.2p1_0046F.1_g026700' => 'hma', 'Hma1.2p1_0046F.1_g026710' => 'hma', 'Hma1.2p1_0168F.1_g074340' => 'hma', 'Hma1.2p1_0266F.1_g107030' => 'hma', 'Hma1.2p1_0266F.1_g107060' => 'hma', 'Hma1.2p1_0275F.1_g110510' => 'hma', 'Hma1.2p1_0592F.1_g185490' => 'hma', 'Hma1.2p1_0592F.1_g185500' => 'hma', 'Hma1.2p1_0592F.1_g185510' => 'hma', 'Hma1.2p1_0592F.1_g185520' => 'hma', 'Hma1.2p1_0592F.1_g185530' => 'hma', 'Hma1.2p1_0818F.1_g223450' => 'hma', 'HPP92_009708' => 'vpl', 'HPP92_009793' => 'vpl', 'HPP92_009796' => 'vpl', 'HPP92_009797' => 'vpl', 'HPP92_014940' => 'vpl', 'HPP92_014988' => 'vpl', 'Hund02463' => 'sun', 'Hund02760' => 'sun', 'Hund05071' => 'sun', 'Hund10108' => 'sun', 'Hund11204' => 'sun', 'Hund14016' => 'sun', 'Hund16464' => 'sun', 'Lalb_Chr09g0333391' => 'lal', 'Lalb_Chr11g0070461' => 'lal', 'Lalb_Chr12g0201671' => 'lal', 'Lalb_Chr13g0297161' => 'lal', 'Lj1g0002823' => 'lja', 'Lj3C1074T6' => 'lonja', 'Lj4A212T28' => 'lonja', 'Lj4g0005516' => 'lja', 'Lj4g0013705' => 'lja', 'Lj4g0027865' => 'lja', 'Lj5C92G16' => 'lonja', 'Lj5C92T12' => 'lonja', 'Lj7C596T3' => 'lonja', 'Lj9A446G59' => 'lonja', 'Lj9A482G21' => 'lonja', 'Lsat_1_v5_gn_1_28261' => 'lsa', 'Lsat_1_v5_gn_1_28281' => 'lsa', 'Lsat_1_v5_gn_1_32721' => 'lsa', 'Lsat_1_v5_gn_4_151760' => 'lsa', 'Lsat_1_v5_gn_4_2120' => 'lsa', 'Lsat_1_v5_gn_4_75761' => 'lsa', 'Lsat_1_v5_gn_5_10920' => 'lsa', 'Manes.02G099900' => 'mes', 'Manes.11G096200' => 'mes', 'Manes.12G007200' => 'mes', 'Manes.14G048300' => 'mes', 'Manes.17G114700' => 'mes', 'Mapoly0002s0070' => 'mpo', 'Mapoly0029s0099' => 'mpo', 'MBI07_g24742_MAGBIO' => 'mbi', 'MBI10_g27988_MAGBIO' => 'mbi', 'MBI11_g13057_MAGBIO' => 'mbi', 'MD02G1137200' => 'mdo', 'MD06G1137200' => 'mdo', 'MD07G1122300' => 'mdo', 'MD09G1078200' => 'mdo', 'MD13G1123700' => 'mdo', 'MD14G1151900' => 'mdo', 'MD17G1030900' => 'mdo', 'MD17G1068200' => 'mdo', 'MD17G1068600' => 'mdo', 'Medtr3g077540' => 'mtr', 'Medtr4g105530' => 'mtr', 'Medtr8g076580' => 'mtr', 'Medtr8g076590' => 'mtr', 'Medtr8g096410' => 'mtr', 'MELO3C016411.2' => 'cme', 'MELO3C017780.2' => 'cme', 'MELO3C022560.2' => 'cme', 'MELO3C026187.2' => 'cme', 'MELO3C026286.2' => 'cme', 'MELO3C032854.2' => 'cme', 'Migut.H02495' => 'egut', 'Migut.I00561' => 'egut', 'Migut.K01015' => 'egut', 'Migut.K01016' => 'egut', 'Migut.L00743' => 'egut', 'Migut.L00744' => 'egut', 'Migut.L00746' => 'egut', 'Migut.L00798' => 'egut', 'Migut.L00799' => 'egut', 'Migut.N02096' => 'egut', 'MSTRG.11259' => 'ama', 'MSTRG.23142' => 'ama', 'MSTRG.2499' => 'ama', 'Nitab4.5_0000003g0730' => 'nta', 'Nitab4.5_0000137g0020' => 'nta', 'Nitab4.5_0000721g0210' => 'nta', 'Nitab4.5_0000723g0050' => 'nta', 'Nitab4.5_0000913g0070' => 'nta', 'Nitab4.5_0001332g0040' => 'nta', 'Nitab4.5_0001771g0050' => 'nta', 'Nitab4.5_0001918g0050' => 'nta', 'Nitab4.5_0002686g0030' => 'nta', 'Nitab4.5_0003156g0020' => 'nta', 'Nitab4.5_0003383g0040' => 'nta', 'Nitab4.5_0003918g0010' => 'nta', 'Nitab4.5_0006760g0010' => 'nta', 'Nn1g05981' => 'nnu', 'Nn1g06288' => 'nnu', 'Nn3g16371' => 'nnu', 'Nn3g16786' => 'nnu', 'Nn4g22232' => 'nnu', 'Oeu005144.1' => 'oeu', 'Oeu005145.1' => 'oeu', 'Oeu011348.1' => 'oeu', 'Oeu016415.1' => 'oeu', 'Oeu023501.1' => 'oeu', 'Oeu044473.1' => 'oeu', 'Oeu048892.2' => 'oeu', 'Os01g0549200' => 'osa', 'Os02g0469300' => 'osa', 'Os04g0311100' => 'osa', 'Os06g0474900' => 'osa', 'Os10g0181700' => 'osa', 'Os11g0454800' => 'osa', 'Peaxi162Scf00037g00714' => 'pax', 'Peaxi162Scf00084g01217' => 'pax', 'Peaxi162Scf00257g00217' => 'pax', 'Peaxi162Scf00516g00215' => 'pax', 'Peaxi162Scf00689g00123' => 'pax', 'PGR044G2719' => 'pgr', 'PGR083G1360' => 'pgr', 'PGR102G2849' => 'pgr', 'PGR119G2534' => 'pgr', 'PGSC0003DMG400003538' => 'stu', 'PGSC0003DMG400028138' => 'stu', 'PGSC0003DMG400031732' => 'stu', 'PGSC0003DMG400038165' => 'stu', 'Phvul.002G284600' => 'pvu', 'Phvul.003G258200' => 'pvu', 'Phvul.009G176500' => 'pvu', 'Potri.003G167201' => 'ptr', 'Potri.005G118400' => 'ptr', 'Potri.012G089000' => 'ptr', 'Potri.012G102800' => 'ptr', 'Potri.015G079400' => 'ptr', 'Potri.015G100900' => 'ptr', 'Pp3c14_9810' => 'ppa', 'Pp3c15_10450' => 'ppa', 'Pp3c20_19150' => 'ppa', 'Pp3c23_12740' => 'ppa', 'Pp3c23_6310' => 'ppa', 'Pp3c24_3720' => 'ppa', 'Pp3c27_2580' => 'ppa', 'Pp3c9_8990' => 'ppa', 'PRCOL_00002854' => 'pco', 'Prupe.1G221200' => 'ppe', 'Prupe.3G289000' => 'ppe', 'Prupe.5G147000' => 'ppe', 'Prupe.6G157300' => 'ppe', 'Prupe.7G163400' => 'ppe', 'Psat0s2177g0040' => 'psa', 'Psat3g174760' => 'psa', 'Psat3g192160' => 'psa', 'Psat4g058520' => 'psa', 'Psat4g096840' => 'psa', 'Psat7g037320' => 'psa', 'PSO017G1274' => 'pso', 'PSO017G5166' => 'pso', 'PSO063G4558' => 'pso', 'PSO170G4458' => 'pso', 'PSO170G5005' => 'pso', 'PSO210G6156' => 'pso', 'PSO210G6635' => 'pso', 'PSO210G7397' => 'pso', 'PSO210G7700' => 'pso', 'PSO455G0035' => 'pso', 'PSO455G0180' => 'pso', 'PSO478G4515' => 'pso', 'PSO832G1305' => 'pso', 'PSO832G3489' => 'pso', 'QL02p075247' => 'qlo', 'QL03p051148' => 'qlo', 'QL05p010313' => 'qlo', 'QL06p034627' => 'qlo', 'QL10p001889' => 'qlo', 'QL10p010846' => 'qlo', 'RcHm_v2.0_Chr1g0350621' => 'rch', 'RcHm_v2.0_Chr1g0350641' => 'rch', 'RcHm_v2.0_Chr2g0092891' => 'rch', 'RcHm_v2.0_Chr2g0100251' => 'rch', 'RcHm_v2.0_Chr2g0158661' => 'rch', 'RcHm_v2.0_Chr2g0172741' => 'rch', 'RcHm_v2.0_Chr4g0429571' => 'rch', 'RcHm_v2.0_Chr5g0042471' => 'rch', 'RcHm_v2.0_Chr7g0189451' => 'rch', 'Rhsim08G0052000' => 'rsi', 'Rhsim08G0174400' => 'rsi', 'Rhsim08G0193200' => 'rsi', 'Rhsim10G0214800' => 'rsi', 'Rhsim10G0214900' => 'rsi', 'Rhsim10G0215000' => 'rsi', 'Rhsim12G0022900' => 'rsi', 'Rhsim12G0177500' => 'rsi', 'Rhsim12G0177700' => 'rsi', 'Sabra03G0122600' => 'sbr', 'Sabra05G0097400' => 'sbr', 'Sabra12G0064100' => 'sbr', 'Sabra15G0121300' => 'sbr', 'SalBow2G0642' => 'sbo', 'SalBow5G2667' => 'sbo', 'SalBow5G4873' => 'sbo', 'SalBow8G2395' => 'sbo', 'Sc03g0003290' => 'sci', 'Sc10g0010130' => 'sci', 'Sc22g0003650' => 'sci', 'Sed0001603' => 'sed', 'Sed0004259' => 'sed', 'Sed0006789' => 'sed', 'Sed0011838' => 'sed', 'Sed0012964' => 'sed', 'Sed0016383' => 'sed', 'Sed0019010' => 'sed', 'Sed0020188' => 'sed', 'SEGI_04702' => 'sgi', 'SEGI_17231' => 'sgi', 'SEGI_18877' => 'sgi', 'SEGI_25196' => 'sgi', 'SEGI_25515' => 'sgi', 'SEGI_28445' => 'sgi', 'SEGI_37452' => 'sgi', 'SGA_v2.0_scaffold188G40336' => 'sas', 'SGA_v2.0_scaffold228G43247' => 'sas', 'SGA_v2.0_scaffold280G46853' => 'sas', 'SGA_v2.0_scaffold34G13808' => 'sas', 'SGA_v2.0_scaffold40G15576' => 'sas', 'SGA_v2.0_scaffold611G53188' => 'sas', 'SGA_v2.0_scaffold78G25461' => 'sas', 'SGA_v2.0_scaffold90G27888' => 'sas', 'SHI08601' => 'shi', 'SHI08606' => 'shi', 'SHI17117' => 'shi', 'SHI17119' => 'shi', 'SMO118G0201' => 'smo', 'SMO169G0247' => 'smo', 'SMO176G0006' => 'smo', 'SMO176G0015' => 'smo', 'SMO202G0006' => 'smo', 'SMO240G0050' => 'smo', 'SMO286G0009' => 'smo', 'SMO338G0033' => 'smo', 'SMO356G0533' => 'smo', 'SMO364G0382' => 'smo', 'SMO367G0166' => 'smo', 'SMO367G1098' => 'smo', 'Solyc01g009920.3' => 'sly', 'Solyc01g099300.3' => 'sly', 'Solyc02g084700.3' => 'sly', 'Solyc03g097520.3' => 'sly', 'Solyc06g071580.3' => 'sly', 'Solyc10g081760.3' => 'sly', 'Sopen01g005480' => 'spe', 'Sopen01g042850' => 'spe', 'Sopen02g029370' => 'spe', 'Sopen03g028280' => 'spe', 'Sopen06g027870' => 'spe', 'Sopen10g032270' => 'spe', 'Sp5g18180' => 'spa', 'Sp6g12880' => 'spa', 'Sp6g30850' => 'spa', 'Sp7g22960' => 'spa', 'Sp7g34010' => 'spa', 'SpUn1326_0010' => 'spa', 'TAR371G0242' => 'tar', 'TAR622G0638' => 'tar', 'TAR628G1548' => 'tar', 'TAR629G1079' => 'tar', 'TAR629G3413' => 'tar', 'THA.LOC104804249' => 'tha', 'THA.LOC104808315' => 'tha', 'THA.LOC104809238' => 'tha', 'THA.LOC104825484' => 'tha', 'Thecc.01G025500' => 'tca', 'Thecc.03G015800' => 'tca', 'Thecc.03G018000' => 'tca', 'Thecc.03G134800' => 'tca', 'Thecc.04G014700' => 'tca', 'Thhalv10006991m.g' => 'esa', 'Thhalv10012707m.g' => 'esa', 'Thhalv10015739m.g' => 'esa', 'Thhalv10024553m.g' => 'esa', 'Thhalv10024673m.g' => 'esa', 'Thhalv10029187m.g' => 'esa', 'TPR.G12971' => 'tpr', 'TPR.G29396' => 'tpr', 'TPR.G33376' => 'tpr', 'TPR.G35508' => 'tpr', 'TPR.G35516' => 'tpr', 'TPR.G37317' => 'tpr', 'TPR.G37389' => 'tpr', 'TPR.G37523' => 'tpr', 'TPR.G559' => 'tpr', 'TWI14G0070' => 'twi', 'TWI14G0729' => 'twi', 'TWI18G0596' => 'twi', 'TWI39G0780' => 'twi', 'TWI39G0850' => 'twi', 'TWI73G1052' => 'twi', 'unitig_52.g17485' => 'ugi', 'unitig_61.g26355' => 'ugi', 'vmacro01040' => 'vma', 'vmacro16731' => 'vma', 'vmacro18270' => 'vma', 'vmacro19142' => 'vma', 'vmacro19407' => 'vma', 'vmacro19408' => 'vma', 'vmacro21899' => 'vma', 'vmacro21900' => 'vma', 'vmacro21901' => 'vma', 'VMungo0251G0490' => 'vmu', 'VMungo0251G1748' => 'vmu', 'VMungo1309G0421' => 'vmu', 'Zm00001eb086500' => 'zma', 'Zm00001eb150680' => 'zma', 'Zm00001eb162330' => 'zma', 'Zm00001eb203130' => 'zma', 'Zm00001eb369480' => 'zma', 'Zm00001eb382340' => 'zma', 'Zm00001eb416360' => 'zma' ), 'gf_id' => 'HOM05D000902', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000902' ), 'data_identifier' => 'HOM05D000902', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000902', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '663', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02470' => 'bna', 'A01p16260' => 'bna', 'A02p01680' => 'bna', 'A03p16600' => 'bna', 'A03p55660' => 'bna', 'A03p64160' => 'bna', 'A03p64170' => 'bna', 'A08p31900' => 'bna', 'A09p59530' => 'bna', 'A10p08230' => 'bna', 'A10p25090' => 'bna', 'Aa31LG3G7100' => 'aar', 'Aa31LG3G7110' => 'aar', 'Aa31LG6G13160' => 'aar', 'Aa31LG7G10770' => 'aar', 'Aa31LG7G3830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2723' => 'aag', 'Actinidia08045' => 'ach', 'Actinidia08888' => 'ach', 'Actinidia18333' => 'ach', 'Actinidia19334' => 'ach', 'Actinidia25552' => 'ach', 'Actinidia26089' => 'ach', 'Actinidia30615' => 'ach', 'Actinidia30616' => 'ach', 'Actinidia33083' => 'ach', 'Actinidia35762' => 'ach', 'Ah.02g110620' => 'amhyb', 'Ah.11g046390' => 'amhyb', 'AL1G31670' => 'aly', 'AL6G23730' => 'aly', 'AL7G14740' => 'aly', 'AL7G14750' => 'aly', 'AL7G14760' => 'aly', 'AL7G28220' => 'aly', 'AL8G24940' => 'aly', 'Aqoxy3G01665' => 'aox', 'Aqoxy3G02853' => 'aox', 'Aqoxy5G01513' => 'aox', 'Aqoxy5G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8SKA4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ75LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKDA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0LJZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7REX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZP4YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWX7I5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2QKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS0L9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPCD8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q161UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC7XCF' => 'arhy', 'AT1G19100' => 'ath', 'AT4G24970' => 'ath', 'AT4G36270' => 'ath', 'AT4G36280' => 'ath', 'AT4G36290' => 'ath', 'AT5G13130' => 'ath', 'AT5G50780' => 'ath', 'ATR0582G266' => 'atr', 'ATR0661G195' => 'atr', 'ATR1152G031' => 'atr', 'Atru.chr11.2382' => 'acertr', 'Atru.chr12.2337' => 'acertr', 'Atru.chr3.744' => 'acertr', 'Atru.chr6.1870' => 'acertr', 'Atru.chr9.2515' => 'acertr', 'AUR62004120' => 'cqu', 'AUR62005667' => 'cqu', 'AUR62007634' => 'cqu', 'AUR62008186' => 'cqu', 'AUR62008187' => 'cqu', 'AUR62008188' => 'cqu', 'AUR62027954' => 'cqu', 'AUR62028766' => 'cqu', 'AUR62028767' => 'cqu', 'AUR62028768' => 'cqu', 'AUR62028886' => 'cqu', 'AUR62029563' => 'cqu', 'AUR62038832' => 'cqu', 'BcaB01g04149' => 'bca', 'BcaB03g12940' => 'bca', 'BcaB03g13090' => 'bca', 'BcaB03g14466' => 'bca', 'BcaB05g24035' => 'bca', 'BcaC01g06050' => 'bca', 'BcaC04g19148' => 'bca', 'BcaC04g20761' => 'bca', 'BcaC06g32845' => 'bca', 'BcaC07g41274' => 'bca', 'BcaC09g50827' => 'bca', 'BcaNung00741' => 'bca', 'BcaNung00742' => 'bca', 'BcaNung01859' => 'bca', 'BcaNung03985' => 'bca', 'BcaNung03989' => 'bca', 'BcaNung05661' => 'bca', 'BolC1t00257H' => 'bol', 'BolC1t01956H' => 'bol', 'BolC2t06534H' => 'bol', 'BolC3t14334H' => 'bol', 'BolC5t30451H' => 'bol', 'BolC7t45880H' => 'bol', 'BolC7t46586H' => 'bol', 'BolC8t49301H' => 'bol', 'BolC8t51837H' => 'bol', 'BolC9t56822H' => 'bol', 'BolC9t59235H' => 'bol', 'BraA01t00234Z' => 'bra', 'BraA01t01563Z' => 'bra', 'BraA02t05147Z' => 'bra', 'BraA03t10947Z' => 'bra', 'BraA03t14633Z' => 'bra', 'BraA08t35112Z' => 'bra', 'BraA09t41330Z' => 'bra', 'BraA10t44570Z' => 'bra', 'C01p02670' => 'bna', 'C01p20260' => 'bna', 'C02p05890' => 'bna', 'C03p19530' => 'bna', 'C05p17470' => 'bna', 'C07p53900' => 'bna', 'C07p61630' => 'bna', 'C08p16800' => 'bna', 'C08p42810' => 'bna', 'C09p39480' => 'bna', 'C09p63980' => 'bna', 'CAN.G1001.7' => 'can', 'CAN.G1034.55' => 'can', 'CAN.G143.7' => 'can', 'CAN.G3340.1' => 'can', 'CAN.G358.19' => 'can', 'CAN.G373.2' => 'can', 'CAN.G674.16' => 'can', 'CAN.G674.17' => 'can', 'CAN.G674.18' => 'can', 'CAN.G732.2' => 'can', 'CAN.G732.3' => 'can', 'CAN.G993.39' => 'can', 'CANSAT01G2052' => 'cansat', 'CANSAT80G0070' => 'cansat', 'CANSAT80G0483' => 'cansat', 'CANSAT80G0625' => 'cansat', 'CARHR019690' => 'chi', 'CARHR080280' => 'chi', 'CARHR152750' => 'chi', 'CARHR152760' => 'chi', 'CARHR152770' => 'chi', 'CARHR200340' => 'chi', 'CARHR232370' => 'chi', 'CARHR244670' => 'chi', 'CARHR244680' => 'chi', 'CARHR257520' => 'chi', 'Carub.0001s1872' => 'cru', 'Carub.0006s1130' => 'cru', 'Carub.0007s0396' => 'cru', 'Carub.0007s0397' => 'cru', 'Carub.0007s1608' => 'cru', 'Carub.0008s1068' => 'cru', 'Carub.0008s1077' => 'cru', 'Ca_16158_v3' => 'car', 'Ca_17571_v3' => 'car', 'Ca_21936_v3' => 'car', 'Ca_22350_v3' => 'car', 'CBR_g22445' => 'cbr', 'CBR_g26290' => 'cbr', 'Cc04_g09610' => 'ccan', 'Cc04_g12280' => 'ccan', 'Cc07_g10230' => 'ccan', 'CDE02G0093' => 'cde', 'CDE02G0701' => 'cde', 'CDE04G1050' => 'cde', 'CDE05G1833' => 'cde', 'CDE05G3058' => 'cde', 'CDE05G3380' => 'cde', 'CDE06G0536' => 'cde', 'Cfa006923' => 'cfa', 'Cfa009402' => 'cfa', 'Cfa018751' => 'cfa', 'Cfa019164' => 'cfa', 'Cfa022935' => 'cfa', 'Ciclev10019081m.g' => 'ccl', 'Ciclev10025076m.g' => 'ccl', 'Ciclev10030712m.g' => 'ccl', 'Ciclev10033760m.g' => 'ccl', 'CiPaw.05G105600' => 'cil', 'CiPaw.08G136700' => 'cil', 'CiPaw.11G003900' => 'cil', 'CiPaw.11G023700' => 'cil', 'CiPaw.12G003700' => 'cil', 'ClCG06G017100' => 'cla', 'ClCG06G018110' => 'cla', 'ClCG07G008800' => 'cla', 'ClCG07G015330' => 'cla', 'COL.COLO4_13698' => 'col', 'COL.COLO4_16659' => 'col', 'COL.COLO4_21986' => 'col', 'COL.COLO4_24049' => 'col', 'COL.COLO4_29061' => 'col', 'COL.COLO4_29075' => 'col', 'COL.COLO4_30094' => 'col', 'Cpa.g.c33689' => 'cpa', 'Cpa.g.sc108.39' => 'cpa', 'Cpa.g.sc108.41' => 'cpa', 'Cpa.g.sc1163.1' => 'cpa', 'Cpa.g.sc4.155' => 'cpa', 'Cpa.g.sc6.194' => 'cpa', 'CsaV3_1G000340' => 'csa', 'CsaV3_1G001400' => 'csa', 'CsaV3_4G002220' => 'csa', 'CsaV3_4G005370' => 'csa', 'CSS0007487' => 'camsi', 'CSS0008066' => 'camsi', 'CSS0009120' => 'camsi', 'CSS0015512' => 'camsi', 'CSS0022409' => 'camsi', 'CSS0025358' => 'camsi', 'CSS0044547' => 'camsi', 'DCAR_013057' => 'dca', 'DCAR_015058' => 'dca', 'DCAR_016027' => 'dca', 'DCAR_017327' => 'dca', 'DCAR_020743' => 'dca', 'DCAR_026157' => 'dca', 'DCAR_032339' => 'dca', 'DCAR_032340' => 'dca', 'Dinv11200' => 'din', 'Dinv11201' => 'din', 'Dinv20631' => 'din', 'Dinv23182' => 'din', 'Dinv33466' => 'din', 'Dinv33583' => 'din', 'Dinv38565' => 'din', 'Duzib068G0200' => 'dzi', 'Duzib147G0132' => 'dzi', 'Duzib147G0635' => 'dzi', 'Duzib205G1670' => 'dzi', 'Duzib251G0606' => 'dzi', 'ECA232G3336' => 'eca', 'ECA232G3763' => 'eca', 'ECA232G4845' => 'eca', 'ECA234G1607' => 'eca', 'ECA246G0932' => 'eca', 'ECA247G0781' => 'eca', 'ECA247G1932' => 'eca', 'ECA247G2079' => 'eca', 'ECA247G3338' => 'eca', 'ECA247G4115' => 'eca', 'EL10Ac3g06552' => 'bvu', 'EL10Ac5g10721' => 'bvu', 'EL10Ac5g10722' => 'bvu', 'EL10Ac5g10723' => 'bvu', 'EL10Ac5g11361' => 'bvu', 'EL10Ac6g13553' => 'bvu', 'EL10As8g23872' => 'bvu', 'Eucgr.B00250' => 'egr', 'Eucgr.B00251' => 'egr', 'Eucgr.B03533' => 'egr', 'Eucgr.I02381' => 'egr', 'Eucgr.K02700' => 'egr', 'FAN02G0174' => 'fan', 'FAN02G3146' => 'fan', 'FAN04G1672' => 'fan', 'FAN04G2273' => 'fan', 'FAN05G2791' => 'fan', 'FAN05G4035' => 'fan', 'FAN07G0834' => 'fan', 'FAN08G1198' => 'fan', 'FAN09G4182' => 'fan', 'FAN12G0496' => 'fan', 'FAN13G1027' => 'fan', 'FAN13G2951' => 'fan', 'FAN14G0705' => 'fan', 'FAN14G0720' => 'fan', 'FAN17G0201' => 'fan', 'FAN17G2665' => 'fan', 'FAN18G1456' => 'fan', 'FAN18G1525' => 'fan', 'FAN18G3500' => 'fan', 'FAN28G2670' => 'fan', 'FvH4_1g12391' => 'fve', 'FvH4_4g23220' => 'fve', 'FvH4_5g08810' => 'fve', 'FvH4_5g28960' => 'fve', 'FvH4_6g42820' => 'fve', 'FvH4_6g51110' => 'fve', 'Glyma.02G051802' => 'gma', 'Glyma.04G185300' => 'gma', 'Glyma.05G202900' => 'gma', 'Glyma.08G010300' => 'gma', 'Glyma.16G131900' => 'gma', 'Glyma.17G087900' => 'gma', 'Gohir.A07G048600' => 'ghi', 'Gohir.A11G179000' => 'ghi', 'Gohir.A12G140900' => 'ghi', 'Gohir.A12G140950' => 'ghi', 'Gohir.A12G191700' => 'ghi', 'Gohir.A13G086300' => 'ghi', 'Gohir.D07G052900' => 'ghi', 'Gohir.D11G186600' => 'ghi', 'Gohir.D12G145575' => 'ghi', 'Gohir.D12G145650' => 'ghi', 'Gohir.D12G145725' => 'ghi', 'Gohir.D12G194050' => 'ghi', 'Gohir.D13G091800' => 'ghi', 'Gorai.001G055900' => 'gra', 'Gorai.007G198400' => 'gra', 'Gorai.008G157000' => 'gra', 'Gorai.008G157100' => 'gra', 'Gorai.008G208700' => 'gra', 'Gorai.010G138700' => 'gra', 'GSVIVG01000977001' => 'vvi', 'GSVIVG01007708001' => 'vvi', 'GSVIVG01008587001' => 'vvi', 'GSVIVG01018849001' => 'vvi', 'GSVIVG01032432001' => 'vvi', 'HanXRQChr02g0034131' => 'han', 'HanXRQChr02g0035981' => 'han', 'HanXRQChr02g0035991' => 'han', 'HanXRQChr05g0155611' => 'han', 'HanXRQChr05g0155621' => 'han', 'HanXRQChr08g0236501' => 'han', 'HanXRQChr09g0261321' => 'han', 'HanXRQChr09g0272081' => 'han', 'HanXRQChr10g0310741' => 'han', 'HanXRQChr11g0325591' => 'han', 'HanXRQChr12g0385691' => 'han', 'HanXRQChr13g0387801' => 'han', 'HanXRQChr15g0463011' => 'han', 'Haze_03826' => 'cav', 'Haze_03827' => 'cav', 'Haze_07183' => 'cav', 'Haze_07537' => 'cav', 'Haze_07539' => 'cav', 'Haze_12461' => 'cav', 'Haze_16115' => 'cav', 'Haze_16808' => 'cav', 'Haze_18531' => 'cav', 'Hma1.2p1_0046F.1_g026700' => 'hma', 'Hma1.2p1_0046F.1_g026710' => 'hma', 'Hma1.2p1_0168F.1_g074340' => 'hma', 'Hma1.2p1_0266F.1_g107030' => 'hma', 'Hma1.2p1_0266F.1_g107060' => 'hma', 'Hma1.2p1_0275F.1_g110510' => 'hma', 'Hma1.2p1_0592F.1_g185490' => 'hma', 'Hma1.2p1_0592F.1_g185500' => 'hma', 'Hma1.2p1_0592F.1_g185510' => 'hma', 'Hma1.2p1_0592F.1_g185520' => 'hma', 'Hma1.2p1_0592F.1_g185530' => 'hma', 'Hma1.2p1_0818F.1_g223450' => 'hma', 'HPP92_009708' => 'vpl', 'HPP92_009793' => 'vpl', 'HPP92_009796' => 'vpl', 'HPP92_009797' => 'vpl', 'HPP92_014940' => 'vpl', 'HPP92_014988' => 'vpl', 'Hund02463' => 'sun', 'Hund02760' => 'sun', 'Hund05071' => 'sun', 'Hund10108' => 'sun', 'Hund11204' => 'sun', 'Hund14016' => 'sun', 'Hund16464' => 'sun', 'Lalb_Chr09g0333391' => 'lal', 'Lalb_Chr11g0070461' => 'lal', 'Lalb_Chr12g0201671' => 'lal', 'Lalb_Chr13g0297161' => 'lal', 'Lj1g0002823' => 'lja', 'Lj3C1074T6' => 'lonja', 'Lj4A212T28' => 'lonja', 'Lj4g0005516' => 'lja', 'Lj4g0013705' => 'lja', 'Lj4g0027865' => 'lja', 'Lj5C92G16' => 'lonja', 'Lj5C92T12' => 'lonja', 'Lj7C596T3' => 'lonja', 'Lj9A446G59' => 'lonja', 'Lj9A482G21' => 'lonja', 'Lsat_1_v5_gn_1_28261' => 'lsa', 'Lsat_1_v5_gn_1_28281' => 'lsa', 'Lsat_1_v5_gn_1_32721' => 'lsa', 'Lsat_1_v5_gn_4_151760' => 'lsa', 'Lsat_1_v5_gn_4_2120' => 'lsa', 'Lsat_1_v5_gn_4_75761' => 'lsa', 'Lsat_1_v5_gn_5_10920' => 'lsa', 'Manes.02G099900' => 'mes', 'Manes.11G096200' => 'mes', 'Manes.12G007200' => 'mes', 'Manes.14G048300' => 'mes', 'Manes.17G114700' => 'mes', 'Mapoly0002s0070' => 'mpo', 'Mapoly0029s0099' => 'mpo', 'MBI07_g24742_MAGBIO' => 'mbi', 'MBI10_g27988_MAGBIO' => 'mbi', 'MBI11_g13057_MAGBIO' => 'mbi', 'MD02G1137200' => 'mdo', 'MD06G1137200' => 'mdo', 'MD07G1122300' => 'mdo', 'MD09G1078200' => 'mdo', 'MD13G1123700' => 'mdo', 'MD14G1151900' => 'mdo', 'MD17G1030900' => 'mdo', 'MD17G1068200' => 'mdo', 'MD17G1068600' => 'mdo', 'Medtr3g077540' => 'mtr', 'Medtr4g105530' => 'mtr', 'Medtr8g076580' => 'mtr', 'Medtr8g076590' => 'mtr', 'Medtr8g096410' => 'mtr', 'MELO3C016411.2' => 'cme', 'MELO3C017780.2' => 'cme', 'MELO3C022560.2' => 'cme', 'MELO3C026187.2' => 'cme', 'MELO3C026286.2' => 'cme', 'MELO3C032854.2' => 'cme', 'Migut.H02495' => 'egut', 'Migut.I00561' => 'egut', 'Migut.K01015' => 'egut', 'Migut.K01016' => 'egut', 'Migut.L00743' => 'egut', 'Migut.L00744' => 'egut', 'Migut.L00746' => 'egut', 'Migut.L00798' => 'egut', 'Migut.L00799' => 'egut', 'Migut.N02096' => 'egut', 'MSTRG.11259' => 'ama', 'MSTRG.23142' => 'ama', 'MSTRG.2499' => 'ama', 'Nitab4.5_0000003g0730' => 'nta', 'Nitab4.5_0000137g0020' => 'nta', 'Nitab4.5_0000721g0210' => 'nta', 'Nitab4.5_0000723g0050' => 'nta', 'Nitab4.5_0000913g0070' => 'nta', 'Nitab4.5_0001332g0040' => 'nta', 'Nitab4.5_0001771g0050' => 'nta', 'Nitab4.5_0001918g0050' => 'nta', 'Nitab4.5_0002686g0030' => 'nta', 'Nitab4.5_0003156g0020' => 'nta', 'Nitab4.5_0003383g0040' => 'nta', 'Nitab4.5_0003918g0010' => 'nta', 'Nitab4.5_0006760g0010' => 'nta', 'Nn1g05981' => 'nnu', 'Nn1g06288' => 'nnu', 'Nn3g16371' => 'nnu', 'Nn3g16786' => 'nnu', 'Nn4g22232' => 'nnu', 'Oeu005144.1' => 'oeu', 'Oeu005145.1' => 'oeu', 'Oeu011348.1' => 'oeu', 'Oeu016415.1' => 'oeu', 'Oeu023501.1' => 'oeu', 'Oeu044473.1' => 'oeu', 'Oeu048892.2' => 'oeu', 'Os01g0549200' => 'osa', 'Os02g0469300' => 'osa', 'Os04g0311100' => 'osa', 'Os06g0474900' => 'osa', 'Os10g0181700' => 'osa', 'Os11g0454800' => 'osa', 'Peaxi162Scf00037g00714' => 'pax', 'Peaxi162Scf00084g01217' => 'pax', 'Peaxi162Scf00257g00217' => 'pax', 'Peaxi162Scf00516g00215' => 'pax', 'Peaxi162Scf00689g00123' => 'pax', 'PGR044G2719' => 'pgr', 'PGR083G1360' => 'pgr', 'PGR102G2849' => 'pgr', 'PGR119G2534' => 'pgr', 'PGSC0003DMG400003538' => 'stu', 'PGSC0003DMG400028138' => 'stu', 'PGSC0003DMG400031732' => 'stu', 'PGSC0003DMG400038165' => 'stu', 'Phvul.002G284600' => 'pvu', 'Phvul.003G258200' => 'pvu', 'Phvul.009G176500' => 'pvu', 'Potri.003G167201' => 'ptr', 'Potri.005G118400' => 'ptr', 'Potri.012G089000' => 'ptr', 'Potri.012G102800' => 'ptr', 'Potri.015G079400' => 'ptr', 'Potri.015G100900' => 'ptr', 'Pp3c14_9810' => 'ppa', 'Pp3c15_10450' => 'ppa', 'Pp3c20_19150' => 'ppa', 'Pp3c23_12740' => 'ppa', 'Pp3c23_6310' => 'ppa', 'Pp3c24_3720' => 'ppa', 'Pp3c27_2580' => 'ppa', 'Pp3c9_8990' => 'ppa', 'PRCOL_00002854' => 'pco', 'Prupe.1G221200' => 'ppe', 'Prupe.3G289000' => 'ppe', 'Prupe.5G147000' => 'ppe', 'Prupe.6G157300' => 'ppe', 'Prupe.7G163400' => 'ppe', 'Psat0s2177g0040' => 'psa', 'Psat3g174760' => 'psa', 'Psat3g192160' => 'psa', 'Psat4g058520' => 'psa', 'Psat4g096840' => 'psa', 'Psat7g037320' => 'psa', 'PSO017G1274' => 'pso', 'PSO017G5166' => 'pso', 'PSO063G4558' => 'pso', 'PSO170G4458' => 'pso', 'PSO170G5005' => 'pso', 'PSO210G6156' => 'pso', 'PSO210G6635' => 'pso', 'PSO210G7397' => 'pso', 'PSO210G7700' => 'pso', 'PSO455G0035' => 'pso', 'PSO455G0180' => 'pso', 'PSO478G4515' => 'pso', 'PSO832G1305' => 'pso', 'PSO832G3489' => 'pso', 'QL02p075247' => 'qlo', 'QL03p051148' => 'qlo', 'QL05p010313' => 'qlo', 'QL06p034627' => 'qlo', 'QL10p001889' => 'qlo', 'QL10p010846' => 'qlo', 'RcHm_v2.0_Chr1g0350621' => 'rch', 'RcHm_v2.0_Chr1g0350641' => 'rch', 'RcHm_v2.0_Chr2g0092891' => 'rch', 'RcHm_v2.0_Chr2g0100251' => 'rch', 'RcHm_v2.0_Chr2g0158661' => 'rch', 'RcHm_v2.0_Chr2g0172741' => 'rch', 'RcHm_v2.0_Chr4g0429571' => 'rch', 'RcHm_v2.0_Chr5g0042471' => 'rch', 'RcHm_v2.0_Chr7g0189451' => 'rch', 'Rhsim08G0052000' => 'rsi', 'Rhsim08G0174400' => 'rsi', 'Rhsim08G0193200' => 'rsi', 'Rhsim10G0214800' => 'rsi', 'Rhsim10G0214900' => 'rsi', 'Rhsim10G0215000' => 'rsi', 'Rhsim12G0022900' => 'rsi', 'Rhsim12G0177500' => 'rsi', 'Rhsim12G0177700' => 'rsi', 'Sabra03G0122600' => 'sbr', 'Sabra05G0097400' => 'sbr', 'Sabra12G0064100' => 'sbr', 'Sabra15G0121300' => 'sbr', 'SalBow2G0642' => 'sbo', 'SalBow5G2667' => 'sbo', 'SalBow5G4873' => 'sbo', 'SalBow8G2395' => 'sbo', 'Sc03g0003290' => 'sci', 'Sc10g0010130' => 'sci', 'Sc22g0003650' => 'sci', 'Sed0001603' => 'sed', 'Sed0004259' => 'sed', 'Sed0006789' => 'sed', 'Sed0011838' => 'sed', 'Sed0012964' => 'sed', 'Sed0016383' => 'sed', 'Sed0019010' => 'sed', 'Sed0020188' => 'sed', 'SEGI_04702' => 'sgi', 'SEGI_17231' => 'sgi', 'SEGI_18877' => 'sgi', 'SEGI_25196' => 'sgi', 'SEGI_25515' => 'sgi', 'SEGI_28445' => 'sgi', 'SEGI_37452' => 'sgi', 'SGA_v2.0_scaffold188G40336' => 'sas', 'SGA_v2.0_scaffold228G43247' => 'sas', 'SGA_v2.0_scaffold280G46853' => 'sas', 'SGA_v2.0_scaffold34G13808' => 'sas', 'SGA_v2.0_scaffold40G15576' => 'sas', 'SGA_v2.0_scaffold611G53188' => 'sas', 'SGA_v2.0_scaffold78G25461' => 'sas', 'SGA_v2.0_scaffold90G27888' => 'sas', 'SHI08601' => 'shi', 'SHI08606' => 'shi', 'SHI17117' => 'shi', 'SHI17119' => 'shi', 'SMO118G0201' => 'smo', 'SMO169G0247' => 'smo', 'SMO176G0006' => 'smo', 'SMO176G0015' => 'smo', 'SMO202G0006' => 'smo', 'SMO240G0050' => 'smo', 'SMO286G0009' => 'smo', 'SMO338G0033' => 'smo', 'SMO356G0533' => 'smo', 'SMO364G0382' => 'smo', 'SMO367G0166' => 'smo', 'SMO367G1098' => 'smo', 'Solyc01g009920.3' => 'sly', 'Solyc01g099300.3' => 'sly', 'Solyc02g084700.3' => 'sly', 'Solyc03g097520.3' => 'sly', 'Solyc06g071580.3' => 'sly', 'Solyc10g081760.3' => 'sly', 'Sopen01g005480' => 'spe', 'Sopen01g042850' => 'spe', 'Sopen02g029370' => 'spe', 'Sopen03g028280' => 'spe', 'Sopen06g027870' => 'spe', 'Sopen10g032270' => 'spe', 'Sp5g18180' => 'spa', 'Sp6g12880' => 'spa', 'Sp6g30850' => 'spa', 'Sp7g22960' => 'spa', 'Sp7g34010' => 'spa', 'SpUn1326_0010' => 'spa', 'TAR371G0242' => 'tar', 'TAR622G0638' => 'tar', 'TAR628G1548' => 'tar', 'TAR629G1079' => 'tar', 'TAR629G3413' => 'tar', 'THA.LOC104804249' => 'tha', 'THA.LOC104808315' => 'tha', 'THA.LOC104809238' => 'tha', 'THA.LOC104825484' => 'tha', 'Thecc.01G025500' => 'tca', 'Thecc.03G015800' => 'tca', 'Thecc.03G018000' => 'tca', 'Thecc.03G134800' => 'tca', 'Thecc.04G014700' => 'tca', 'Thhalv10006991m.g' => 'esa', 'Thhalv10012707m.g' => 'esa', 'Thhalv10015739m.g' => 'esa', 'Thhalv10024553m.g' => 'esa', 'Thhalv10024673m.g' => 'esa', 'Thhalv10029187m.g' => 'esa', 'TPR.G12971' => 'tpr', 'TPR.G29396' => 'tpr', 'TPR.G33376' => 'tpr', 'TPR.G35508' => 'tpr', 'TPR.G35516' => 'tpr', 'TPR.G37317' => 'tpr', 'TPR.G37389' => 'tpr', 'TPR.G37523' => 'tpr', 'TPR.G559' => 'tpr', 'TWI14G0070' => 'twi', 'TWI14G0729' => 'twi', 'TWI18G0596' => 'twi', 'TWI39G0780' => 'twi', 'TWI39G0850' => 'twi', 'TWI73G1052' => 'twi', 'unitig_52.g17485' => 'ugi', 'unitig_61.g26355' => 'ugi', 'vmacro01040' => 'vma', 'vmacro16731' => 'vma', 'vmacro18270' => 'vma', 'vmacro19142' => 'vma', 'vmacro19407' => 'vma', 'vmacro19408' => 'vma', 'vmacro21899' => 'vma', 'vmacro21900' => 'vma', 'vmacro21901' => 'vma', 'VMungo0251G0490' => 'vmu', 'VMungo0251G1748' => 'vmu', 'VMungo1309G0421' => 'vmu', 'Zm00001eb086500' => 'zma', 'Zm00001eb150680' => 'zma', 'Zm00001eb162330' => 'zma', 'Zm00001eb203130' => 'zma', 'Zm00001eb369480' => 'zma', 'Zm00001eb382340' => 'zma', 'Zm00001eb416360' => 'zma' ) $gf_id = 'HOM05D000902' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000902' ) $data_identifier = 'HOM05D000902' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 13, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 10, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 6, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 9, 'hma' => (int) 12, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 4, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 6, 'ppa' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 6, 'rch' => (int) 9, 'rsi' => (int) 9, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 12, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 3, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416360' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000902', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '663', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02470' => 'bna', 'A01p16260' => 'bna', 'A02p01680' => 'bna', 'A03p16600' => 'bna', 'A03p55660' => 'bna', 'A03p64160' => 'bna', 'A03p64170' => 'bna', 'A08p31900' => 'bna', 'A09p59530' => 'bna', 'A10p08230' => 'bna', 'A10p25090' => 'bna', 'Aa31LG3G7100' => 'aar', 'Aa31LG3G7110' => 'aar', 'Aa31LG6G13160' => 'aar', 'Aa31LG7G10770' => 'aar', 'Aa31LG7G3830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2723' => 'aag', 'Actinidia08045' => 'ach', 'Actinidia08888' => 'ach', 'Actinidia18333' => 'ach', 'Actinidia19334' => 'ach', 'Actinidia25552' => 'ach', 'Actinidia26089' => 'ach', 'Actinidia30615' => 'ach', 'Actinidia30616' => 'ach', 'Actinidia33083' => 'ach', 'Actinidia35762' => 'ach', 'Ah.02g110620' => 'amhyb', 'Ah.11g046390' => 'amhyb', 'AL1G31670' => 'aly', 'AL6G23730' => 'aly', 'AL7G14740' => 'aly', 'AL7G14750' => 'aly', 'AL7G14760' => 'aly', 'AL7G28220' => 'aly', 'AL8G24940' => 'aly', 'Aqoxy3G01665' => 'aox', 'Aqoxy3G02853' => 'aox', 'Aqoxy5G01513' => 'aox', 'Aqoxy5G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8SKA4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ75LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKDA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0LJZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7REX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZP4YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWX7I5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2QKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS0L9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPCD8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q161UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC7XCF' => 'arhy', 'AT1G19100' => 'ath', 'AT4G24970' => 'ath', 'AT4G36270' => 'ath', 'AT4G36280' => 'ath', 'AT4G36290' => 'ath', 'AT5G13130' => 'ath', 'AT5G50780' => 'ath', 'ATR0582G266' => 'atr', 'ATR0661G195' => 'atr', 'ATR1152G031' => 'atr', 'Atru.chr11.2382' => 'acertr', 'Atru.chr12.2337' => 'acertr', 'Atru.chr3.744' => 'acertr', 'Atru.chr6.1870' => 'acertr', 'Atru.chr9.2515' => 'acertr', 'AUR62004120' => 'cqu', 'AUR62005667' => 'cqu', 'AUR62007634' => 'cqu', 'AUR62008186' => 'cqu', 'AUR62008187' => 'cqu', 'AUR62008188' => 'cqu', 'AUR62027954' => 'cqu', 'AUR62028766' => 'cqu', 'AUR62028767' => 'cqu', 'AUR62028768' => 'cqu', 'AUR62028886' => 'cqu', 'AUR62029563' => 'cqu', 'AUR62038832' => 'cqu', 'BcaB01g04149' => 'bca', 'BcaB03g12940' => 'bca', 'BcaB03g13090' => 'bca', 'BcaB03g14466' => 'bca', 'BcaB05g24035' => 'bca', 'BcaC01g06050' => 'bca', 'BcaC04g19148' => 'bca', 'BcaC04g20761' => 'bca', 'BcaC06g32845' => 'bca', 'BcaC07g41274' => 'bca', 'BcaC09g50827' => 'bca', 'BcaNung00741' => 'bca', 'BcaNung00742' => 'bca', 'BcaNung01859' => 'bca', 'BcaNung03985' => 'bca', 'BcaNung03989' => 'bca', 'BcaNung05661' => 'bca', 'BolC1t00257H' => 'bol', 'BolC1t01956H' => 'bol', 'BolC2t06534H' => 'bol', 'BolC3t14334H' => 'bol', 'BolC5t30451H' => 'bol', 'BolC7t45880H' => 'bol', 'BolC7t46586H' => 'bol', 'BolC8t49301H' => 'bol', 'BolC8t51837H' => 'bol', 'BolC9t56822H' => 'bol', 'BolC9t59235H' => 'bol', 'BraA01t00234Z' => 'bra', 'BraA01t01563Z' => 'bra', 'BraA02t05147Z' => 'bra', 'BraA03t10947Z' => 'bra', 'BraA03t14633Z' => 'bra', 'BraA08t35112Z' => 'bra', 'BraA09t41330Z' => 'bra', 'BraA10t44570Z' => 'bra', 'C01p02670' => 'bna', 'C01p20260' => 'bna', 'C02p05890' => 'bna', 'C03p19530' => 'bna', 'C05p17470' => 'bna', 'C07p53900' => 'bna', 'C07p61630' => 'bna', 'C08p16800' => 'bna', 'C08p42810' => 'bna', 'C09p39480' => 'bna', 'C09p63980' => 'bna', 'CAN.G1001.7' => 'can', 'CAN.G1034.55' => 'can', 'CAN.G143.7' => 'can', 'CAN.G3340.1' => 'can', 'CAN.G358.19' => 'can', 'CAN.G373.2' => 'can', 'CAN.G674.16' => 'can', 'CAN.G674.17' => 'can', 'CAN.G674.18' => 'can', 'CAN.G732.2' => 'can', 'CAN.G732.3' => 'can', 'CAN.G993.39' => 'can', 'CANSAT01G2052' => 'cansat', 'CANSAT80G0070' => 'cansat', 'CANSAT80G0483' => 'cansat', 'CANSAT80G0625' => 'cansat', 'CARHR019690' => 'chi', 'CARHR080280' => 'chi', 'CARHR152750' => 'chi', 'CARHR152760' => 'chi', 'CARHR152770' => 'chi', 'CARHR200340' => 'chi', 'CARHR232370' => 'chi', 'CARHR244670' => 'chi', 'CARHR244680' => 'chi', 'CARHR257520' => 'chi', 'Carub.0001s1872' => 'cru', 'Carub.0006s1130' => 'cru', 'Carub.0007s0396' => 'cru', 'Carub.0007s0397' => 'cru', 'Carub.0007s1608' => 'cru', 'Carub.0008s1068' => 'cru', 'Carub.0008s1077' => 'cru', 'Ca_16158_v3' => 'car', 'Ca_17571_v3' => 'car', 'Ca_21936_v3' => 'car', 'Ca_22350_v3' => 'car', 'CBR_g22445' => 'cbr', 'CBR_g26290' => 'cbr', 'Cc04_g09610' => 'ccan', 'Cc04_g12280' => 'ccan', 'Cc07_g10230' => 'ccan', 'CDE02G0093' => 'cde', 'CDE02G0701' => 'cde', 'CDE04G1050' => 'cde', 'CDE05G1833' => 'cde', 'CDE05G3058' => 'cde', 'CDE05G3380' => 'cde', 'CDE06G0536' => 'cde', 'Cfa006923' => 'cfa', 'Cfa009402' => 'cfa', 'Cfa018751' => 'cfa', 'Cfa019164' => 'cfa', 'Cfa022935' => 'cfa', 'Ciclev10019081m.g' => 'ccl', 'Ciclev10025076m.g' => 'ccl', 'Ciclev10030712m.g' => 'ccl', 'Ciclev10033760m.g' => 'ccl', 'CiPaw.05G105600' => 'cil', 'CiPaw.08G136700' => 'cil', 'CiPaw.11G003900' => 'cil', 'CiPaw.11G023700' => 'cil', 'CiPaw.12G003700' => 'cil', 'ClCG06G017100' => 'cla', 'ClCG06G018110' => 'cla', 'ClCG07G008800' => 'cla', 'ClCG07G015330' => 'cla', 'COL.COLO4_13698' => 'col', 'COL.COLO4_16659' => 'col', 'COL.COLO4_21986' => 'col', 'COL.COLO4_24049' => 'col', 'COL.COLO4_29061' => 'col', 'COL.COLO4_29075' => 'col', 'COL.COLO4_30094' => 'col', 'Cpa.g.c33689' => 'cpa', 'Cpa.g.sc108.39' => 'cpa', 'Cpa.g.sc108.41' => 'cpa', 'Cpa.g.sc1163.1' => 'cpa', 'Cpa.g.sc4.155' => 'cpa', 'Cpa.g.sc6.194' => 'cpa', 'CsaV3_1G000340' => 'csa', 'CsaV3_1G001400' => 'csa', 'CsaV3_4G002220' => 'csa', 'CsaV3_4G005370' => 'csa', 'CSS0007487' => 'camsi', 'CSS0008066' => 'camsi', 'CSS0009120' => 'camsi', 'CSS0015512' => 'camsi', 'CSS0022409' => 'camsi', 'CSS0025358' => 'camsi', 'CSS0044547' => 'camsi', 'DCAR_013057' => 'dca', 'DCAR_015058' => 'dca', 'DCAR_016027' => 'dca', 'DCAR_017327' => 'dca', 'DCAR_020743' => 'dca', 'DCAR_026157' => 'dca', 'DCAR_032339' => 'dca', 'DCAR_032340' => 'dca', 'Dinv11200' => 'din', 'Dinv11201' => 'din', 'Dinv20631' => 'din', 'Dinv23182' => 'din', 'Dinv33466' => 'din', 'Dinv33583' => 'din', 'Dinv38565' => 'din', 'Duzib068G0200' => 'dzi', 'Duzib147G0132' => 'dzi', 'Duzib147G0635' => 'dzi', 'Duzib205G1670' => 'dzi', 'Duzib251G0606' => 'dzi', 'ECA232G3336' => 'eca', 'ECA232G3763' => 'eca', 'ECA232G4845' => 'eca', 'ECA234G1607' => 'eca', 'ECA246G0932' => 'eca', 'ECA247G0781' => 'eca', 'ECA247G1932' => 'eca', 'ECA247G2079' => 'eca', 'ECA247G3338' => 'eca', 'ECA247G4115' => 'eca', 'EL10Ac3g06552' => 'bvu', 'EL10Ac5g10721' => 'bvu', 'EL10Ac5g10722' => 'bvu', 'EL10Ac5g10723' => 'bvu', 'EL10Ac5g11361' => 'bvu', 'EL10Ac6g13553' => 'bvu', 'EL10As8g23872' => 'bvu', 'Eucgr.B00250' => 'egr', 'Eucgr.B00251' => 'egr', 'Eucgr.B03533' => 'egr', 'Eucgr.I02381' => 'egr', 'Eucgr.K02700' => 'egr', 'FAN02G0174' => 'fan', 'FAN02G3146' => 'fan', 'FAN04G1672' => 'fan', 'FAN04G2273' => 'fan', 'FAN05G2791' => 'fan', 'FAN05G4035' => 'fan', 'FAN07G0834' => 'fan', 'FAN08G1198' => 'fan', 'FAN09G4182' => 'fan', 'FAN12G0496' => 'fan', 'FAN13G1027' => 'fan', 'FAN13G2951' => 'fan', 'FAN14G0705' => 'fan', 'FAN14G0720' => 'fan', 'FAN17G0201' => 'fan', 'FAN17G2665' => 'fan', 'FAN18G1456' => 'fan', 'FAN18G1525' => 'fan', 'FAN18G3500' => 'fan', 'FAN28G2670' => 'fan', 'FvH4_1g12391' => 'fve', 'FvH4_4g23220' => 'fve', 'FvH4_5g08810' => 'fve', 'FvH4_5g28960' => 'fve', 'FvH4_6g42820' => 'fve', 'FvH4_6g51110' => 'fve', 'Glyma.02G051802' => 'gma', 'Glyma.04G185300' => 'gma', 'Glyma.05G202900' => 'gma', 'Glyma.08G010300' => 'gma', 'Glyma.16G131900' => 'gma', 'Glyma.17G087900' => 'gma', 'Gohir.A07G048600' => 'ghi', 'Gohir.A11G179000' => 'ghi', 'Gohir.A12G140900' => 'ghi', 'Gohir.A12G140950' => 'ghi', 'Gohir.A12G191700' => 'ghi', 'Gohir.A13G086300' => 'ghi', 'Gohir.D07G052900' => 'ghi', 'Gohir.D11G186600' => 'ghi', 'Gohir.D12G145575' => 'ghi', 'Gohir.D12G145650' => 'ghi', 'Gohir.D12G145725' => 'ghi', 'Gohir.D12G194050' => 'ghi', 'Gohir.D13G091800' => 'ghi', 'Gorai.001G055900' => 'gra', 'Gorai.007G198400' => 'gra', 'Gorai.008G157000' => 'gra', 'Gorai.008G157100' => 'gra', 'Gorai.008G208700' => 'gra', 'Gorai.010G138700' => 'gra', 'GSVIVG01000977001' => 'vvi', 'GSVIVG01007708001' => 'vvi', 'GSVIVG01008587001' => 'vvi', 'GSVIVG01018849001' => 'vvi', 'GSVIVG01032432001' => 'vvi', 'HanXRQChr02g0034131' => 'han', 'HanXRQChr02g0035981' => 'han', 'HanXRQChr02g0035991' => 'han', 'HanXRQChr05g0155611' => 'han', 'HanXRQChr05g0155621' => 'han', 'HanXRQChr08g0236501' => 'han', 'HanXRQChr09g0261321' => 'han', 'HanXRQChr09g0272081' => 'han', 'HanXRQChr10g0310741' => 'han', 'HanXRQChr11g0325591' => 'han', 'HanXRQChr12g0385691' => 'han', 'HanXRQChr13g0387801' => 'han', 'HanXRQChr15g0463011' => 'han', 'Haze_03826' => 'cav', 'Haze_03827' => 'cav', 'Haze_07183' => 'cav', 'Haze_07537' => 'cav', 'Haze_07539' => 'cav', 'Haze_12461' => 'cav', 'Haze_16115' => 'cav', 'Haze_16808' => 'cav', 'Haze_18531' => 'cav', 'Hma1.2p1_0046F.1_g026700' => 'hma', 'Hma1.2p1_0046F.1_g026710' => 'hma', 'Hma1.2p1_0168F.1_g074340' => 'hma', 'Hma1.2p1_0266F.1_g107030' => 'hma', 'Hma1.2p1_0266F.1_g107060' => 'hma', 'Hma1.2p1_0275F.1_g110510' => 'hma', 'Hma1.2p1_0592F.1_g185490' => 'hma', 'Hma1.2p1_0592F.1_g185500' => 'hma', 'Hma1.2p1_0592F.1_g185510' => 'hma', 'Hma1.2p1_0592F.1_g185520' => 'hma', 'Hma1.2p1_0592F.1_g185530' => 'hma', 'Hma1.2p1_0818F.1_g223450' => 'hma', 'HPP92_009708' => 'vpl', 'HPP92_009793' => 'vpl', 'HPP92_009796' => 'vpl', 'HPP92_009797' => 'vpl', 'HPP92_014940' => 'vpl', 'HPP92_014988' => 'vpl', 'Hund02463' => 'sun', 'Hund02760' => 'sun', 'Hund05071' => 'sun', 'Hund10108' => 'sun', 'Hund11204' => 'sun', 'Hund14016' => 'sun', 'Hund16464' => 'sun', 'Lalb_Chr09g0333391' => 'lal', 'Lalb_Chr11g0070461' => 'lal', 'Lalb_Chr12g0201671' => 'lal', 'Lalb_Chr13g0297161' => 'lal', 'Lj1g0002823' => 'lja', 'Lj3C1074T6' => 'lonja', 'Lj4A212T28' => 'lonja', 'Lj4g0005516' => 'lja', 'Lj4g0013705' => 'lja', 'Lj4g0027865' => 'lja', 'Lj5C92G16' => 'lonja', 'Lj5C92T12' => 'lonja', 'Lj7C596T3' => 'lonja', 'Lj9A446G59' => 'lonja', 'Lj9A482G21' => 'lonja', 'Lsat_1_v5_gn_1_28261' => 'lsa', 'Lsat_1_v5_gn_1_28281' => 'lsa', 'Lsat_1_v5_gn_1_32721' => 'lsa', 'Lsat_1_v5_gn_4_151760' => 'lsa', 'Lsat_1_v5_gn_4_2120' => 'lsa', 'Lsat_1_v5_gn_4_75761' => 'lsa', 'Lsat_1_v5_gn_5_10920' => 'lsa', 'Manes.02G099900' => 'mes', 'Manes.11G096200' => 'mes', 'Manes.12G007200' => 'mes', 'Manes.14G048300' => 'mes', 'Manes.17G114700' => 'mes', 'Mapoly0002s0070' => 'mpo', 'Mapoly0029s0099' => 'mpo', 'MBI07_g24742_MAGBIO' => 'mbi', 'MBI10_g27988_MAGBIO' => 'mbi', 'MBI11_g13057_MAGBIO' => 'mbi', 'MD02G1137200' => 'mdo', 'MD06G1137200' => 'mdo', 'MD07G1122300' => 'mdo', 'MD09G1078200' => 'mdo', 'MD13G1123700' => 'mdo', 'MD14G1151900' => 'mdo', 'MD17G1030900' => 'mdo', 'MD17G1068200' => 'mdo', 'MD17G1068600' => 'mdo', 'Medtr3g077540' => 'mtr', 'Medtr4g105530' => 'mtr', 'Medtr8g076580' => 'mtr', 'Medtr8g076590' => 'mtr', 'Medtr8g096410' => 'mtr', 'MELO3C016411.2' => 'cme', 'MELO3C017780.2' => 'cme', 'MELO3C022560.2' => 'cme', 'MELO3C026187.2' => 'cme', 'MELO3C026286.2' => 'cme', 'MELO3C032854.2' => 'cme', 'Migut.H02495' => 'egut', 'Migut.I00561' => 'egut', 'Migut.K01015' => 'egut', 'Migut.K01016' => 'egut', 'Migut.L00743' => 'egut', 'Migut.L00744' => 'egut', 'Migut.L00746' => 'egut', 'Migut.L00798' => 'egut', 'Migut.L00799' => 'egut', 'Migut.N02096' => 'egut', 'MSTRG.11259' => 'ama', 'MSTRG.23142' => 'ama', 'MSTRG.2499' => 'ama', 'Nitab4.5_0000003g0730' => 'nta', 'Nitab4.5_0000137g0020' => 'nta', 'Nitab4.5_0000721g0210' => 'nta', 'Nitab4.5_0000723g0050' => 'nta', 'Nitab4.5_0000913g0070' => 'nta', 'Nitab4.5_0001332g0040' => 'nta', 'Nitab4.5_0001771g0050' => 'nta', 'Nitab4.5_0001918g0050' => 'nta', 'Nitab4.5_0002686g0030' => 'nta', 'Nitab4.5_0003156g0020' => 'nta', 'Nitab4.5_0003383g0040' => 'nta', 'Nitab4.5_0003918g0010' => 'nta', 'Nitab4.5_0006760g0010' => 'nta', 'Nn1g05981' => 'nnu', 'Nn1g06288' => 'nnu', 'Nn3g16371' => 'nnu', 'Nn3g16786' => 'nnu', 'Nn4g22232' => 'nnu', 'Oeu005144.1' => 'oeu', 'Oeu005145.1' => 'oeu', 'Oeu011348.1' => 'oeu', 'Oeu016415.1' => 'oeu', 'Oeu023501.1' => 'oeu', 'Oeu044473.1' => 'oeu', 'Oeu048892.2' => 'oeu', 'Os01g0549200' => 'osa', 'Os02g0469300' => 'osa', 'Os04g0311100' => 'osa', 'Os06g0474900' => 'osa', 'Os10g0181700' => 'osa', 'Os11g0454800' => 'osa', 'Peaxi162Scf00037g00714' => 'pax', 'Peaxi162Scf00084g01217' => 'pax', 'Peaxi162Scf00257g00217' => 'pax', 'Peaxi162Scf00516g00215' => 'pax', 'Peaxi162Scf00689g00123' => 'pax', 'PGR044G2719' => 'pgr', 'PGR083G1360' => 'pgr', 'PGR102G2849' => 'pgr', 'PGR119G2534' => 'pgr', 'PGSC0003DMG400003538' => 'stu', 'PGSC0003DMG400028138' => 'stu', 'PGSC0003DMG400031732' => 'stu', 'PGSC0003DMG400038165' => 'stu', 'Phvul.002G284600' => 'pvu', 'Phvul.003G258200' => 'pvu', 'Phvul.009G176500' => 'pvu', 'Potri.003G167201' => 'ptr', 'Potri.005G118400' => 'ptr', 'Potri.012G089000' => 'ptr', 'Potri.012G102800' => 'ptr', 'Potri.015G079400' => 'ptr', 'Potri.015G100900' => 'ptr', 'Pp3c14_9810' => 'ppa', 'Pp3c15_10450' => 'ppa', 'Pp3c20_19150' => 'ppa', 'Pp3c23_12740' => 'ppa', 'Pp3c23_6310' => 'ppa', 'Pp3c24_3720' => 'ppa', 'Pp3c27_2580' => 'ppa', 'Pp3c9_8990' => 'ppa', 'PRCOL_00002854' => 'pco', 'Prupe.1G221200' => 'ppe', 'Prupe.3G289000' => 'ppe', 'Prupe.5G147000' => 'ppe', 'Prupe.6G157300' => 'ppe', 'Prupe.7G163400' => 'ppe', 'Psat0s2177g0040' => 'psa', 'Psat3g174760' => 'psa', 'Psat3g192160' => 'psa', 'Psat4g058520' => 'psa', 'Psat4g096840' => 'psa', 'Psat7g037320' => 'psa', 'PSO017G1274' => 'pso', 'PSO017G5166' => 'pso', 'PSO063G4558' => 'pso', 'PSO170G4458' => 'pso', 'PSO170G5005' => 'pso', 'PSO210G6156' => 'pso', 'PSO210G6635' => 'pso', 'PSO210G7397' => 'pso', 'PSO210G7700' => 'pso', 'PSO455G0035' => 'pso', 'PSO455G0180' => 'pso', 'PSO478G4515' => 'pso', 'PSO832G1305' => 'pso', 'PSO832G3489' => 'pso', 'QL02p075247' => 'qlo', 'QL03p051148' => 'qlo', 'QL05p010313' => 'qlo', 'QL06p034627' => 'qlo', 'QL10p001889' => 'qlo', 'QL10p010846' => 'qlo', 'RcHm_v2.0_Chr1g0350621' => 'rch', 'RcHm_v2.0_Chr1g0350641' => 'rch', 'RcHm_v2.0_Chr2g0092891' => 'rch', 'RcHm_v2.0_Chr2g0100251' => 'rch', 'RcHm_v2.0_Chr2g0158661' => 'rch', 'RcHm_v2.0_Chr2g0172741' => 'rch', 'RcHm_v2.0_Chr4g0429571' => 'rch', 'RcHm_v2.0_Chr5g0042471' => 'rch', 'RcHm_v2.0_Chr7g0189451' => 'rch', 'Rhsim08G0052000' => 'rsi', 'Rhsim08G0174400' => 'rsi', 'Rhsim08G0193200' => 'rsi', 'Rhsim10G0214800' => 'rsi', 'Rhsim10G0214900' => 'rsi', 'Rhsim10G0215000' => 'rsi', 'Rhsim12G0022900' => 'rsi', 'Rhsim12G0177500' => 'rsi', 'Rhsim12G0177700' => 'rsi', 'Sabra03G0122600' => 'sbr', 'Sabra05G0097400' => 'sbr', 'Sabra12G0064100' => 'sbr', 'Sabra15G0121300' => 'sbr', 'SalBow2G0642' => 'sbo', 'SalBow5G2667' => 'sbo', 'SalBow5G4873' => 'sbo', 'SalBow8G2395' => 'sbo', 'Sc03g0003290' => 'sci', 'Sc10g0010130' => 'sci', 'Sc22g0003650' => 'sci', 'Sed0001603' => 'sed', 'Sed0004259' => 'sed', 'Sed0006789' => 'sed', 'Sed0011838' => 'sed', 'Sed0012964' => 'sed', 'Sed0016383' => 'sed', 'Sed0019010' => 'sed', 'Sed0020188' => 'sed', 'SEGI_04702' => 'sgi', 'SEGI_17231' => 'sgi', 'SEGI_18877' => 'sgi', 'SEGI_25196' => 'sgi', 'SEGI_25515' => 'sgi', 'SEGI_28445' => 'sgi', 'SEGI_37452' => 'sgi', 'SGA_v2.0_scaffold188G40336' => 'sas', 'SGA_v2.0_scaffold228G43247' => 'sas', 'SGA_v2.0_scaffold280G46853' => 'sas', 'SGA_v2.0_scaffold34G13808' => 'sas', 'SGA_v2.0_scaffold40G15576' => 'sas', 'SGA_v2.0_scaffold611G53188' => 'sas', 'SGA_v2.0_scaffold78G25461' => 'sas', 'SGA_v2.0_scaffold90G27888' => 'sas', 'SHI08601' => 'shi', 'SHI08606' => 'shi', 'SHI17117' => 'shi', 'SHI17119' => 'shi', 'SMO118G0201' => 'smo', 'SMO169G0247' => 'smo', 'SMO176G0006' => 'smo', 'SMO176G0015' => 'smo', 'SMO202G0006' => 'smo', 'SMO240G0050' => 'smo', 'SMO286G0009' => 'smo', 'SMO338G0033' => 'smo', 'SMO356G0533' => 'smo', 'SMO364G0382' => 'smo', 'SMO367G0166' => 'smo', 'SMO367G1098' => 'smo', 'Solyc01g009920.3' => 'sly', 'Solyc01g099300.3' => 'sly', 'Solyc02g084700.3' => 'sly', 'Solyc03g097520.3' => 'sly', 'Solyc06g071580.3' => 'sly', 'Solyc10g081760.3' => 'sly', 'Sopen01g005480' => 'spe', 'Sopen01g042850' => 'spe', 'Sopen02g029370' => 'spe', 'Sopen03g028280' => 'spe', 'Sopen06g027870' => 'spe', 'Sopen10g032270' => 'spe', 'Sp5g18180' => 'spa', 'Sp6g12880' => 'spa', 'Sp6g30850' => 'spa', 'Sp7g22960' => 'spa', 'Sp7g34010' => 'spa', 'SpUn1326_0010' => 'spa', 'TAR371G0242' => 'tar', 'TAR622G0638' => 'tar', 'TAR628G1548' => 'tar', 'TAR629G1079' => 'tar', 'TAR629G3413' => 'tar', 'THA.LOC104804249' => 'tha', 'THA.LOC104808315' => 'tha', 'THA.LOC104809238' => 'tha', 'THA.LOC104825484' => 'tha', 'Thecc.01G025500' => 'tca', 'Thecc.03G015800' => 'tca', 'Thecc.03G018000' => 'tca', 'Thecc.03G134800' => 'tca', 'Thecc.04G014700' => 'tca', 'Thhalv10006991m.g' => 'esa', 'Thhalv10012707m.g' => 'esa', 'Thhalv10015739m.g' => 'esa', 'Thhalv10024553m.g' => 'esa', 'Thhalv10024673m.g' => 'esa', 'Thhalv10029187m.g' => 'esa', 'TPR.G12971' => 'tpr', 'TPR.G29396' => 'tpr', 'TPR.G33376' => 'tpr', 'TPR.G35508' => 'tpr', 'TPR.G35516' => 'tpr', 'TPR.G37317' => 'tpr', 'TPR.G37389' => 'tpr', 'TPR.G37523' => 'tpr', 'TPR.G559' => 'tpr', 'TWI14G0070' => 'twi', 'TWI14G0729' => 'twi', 'TWI18G0596' => 'twi', 'TWI39G0780' => 'twi', 'TWI39G0850' => 'twi', 'TWI73G1052' => 'twi', 'unitig_52.g17485' => 'ugi', 'unitig_61.g26355' => 'ugi', 'vmacro01040' => 'vma', 'vmacro16731' => 'vma', 'vmacro18270' => 'vma', 'vmacro19142' => 'vma', 'vmacro19407' => 'vma', 'vmacro19408' => 'vma', 'vmacro21899' => 'vma', 'vmacro21900' => 'vma', 'vmacro21901' => 'vma', 'VMungo0251G0490' => 'vmu', 'VMungo0251G1748' => 'vmu', 'VMungo1309G0421' => 'vmu', 'Zm00001eb086500' => 'zma', 'Zm00001eb150680' => 'zma', 'Zm00001eb162330' => 'zma', 'Zm00001eb203130' => 'zma', 'Zm00001eb369480' => 'zma', 'Zm00001eb382340' => 'zma', 'Zm00001eb416360' => 'zma' ), 'gf_id' => 'HOM05D000902', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000902' ), 'data_identifier' => 'HOM05D000902', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000902', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '663', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02470' => 'bna', 'A01p16260' => 'bna', 'A02p01680' => 'bna', 'A03p16600' => 'bna', 'A03p55660' => 'bna', 'A03p64160' => 'bna', 'A03p64170' => 'bna', 'A08p31900' => 'bna', 'A09p59530' => 'bna', 'A10p08230' => 'bna', 'A10p25090' => 'bna', 'Aa31LG3G7100' => 'aar', 'Aa31LG3G7110' => 'aar', 'Aa31LG6G13160' => 'aar', 'Aa31LG7G10770' => 'aar', 'Aa31LG7G3830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2723' => 'aag', 'Actinidia08045' => 'ach', 'Actinidia08888' => 'ach', 'Actinidia18333' => 'ach', 'Actinidia19334' => 'ach', 'Actinidia25552' => 'ach', 'Actinidia26089' => 'ach', 'Actinidia30615' => 'ach', 'Actinidia30616' => 'ach', 'Actinidia33083' => 'ach', 'Actinidia35762' => 'ach', 'Ah.02g110620' => 'amhyb', 'Ah.11g046390' => 'amhyb', 'AL1G31670' => 'aly', 'AL6G23730' => 'aly', 'AL7G14740' => 'aly', 'AL7G14750' => 'aly', 'AL7G14760' => 'aly', 'AL7G28220' => 'aly', 'AL8G24940' => 'aly', 'Aqoxy3G01665' => 'aox', 'Aqoxy3G02853' => 'aox', 'Aqoxy5G01513' => 'aox', 'Aqoxy5G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8SKA4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ75LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKDA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0LJZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7REX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZP4YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWX7I5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2QKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS0L9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPCD8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q161UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC7XCF' => 'arhy', 'AT1G19100' => 'ath', 'AT4G24970' => 'ath', 'AT4G36270' => 'ath', 'AT4G36280' => 'ath', 'AT4G36290' => 'ath', 'AT5G13130' => 'ath', 'AT5G50780' => 'ath', 'ATR0582G266' => 'atr', 'ATR0661G195' => 'atr', 'ATR1152G031' => 'atr', 'Atru.chr11.2382' => 'acertr', 'Atru.chr12.2337' => 'acertr', 'Atru.chr3.744' => 'acertr', 'Atru.chr6.1870' => 'acertr', 'Atru.chr9.2515' => 'acertr', 'AUR62004120' => 'cqu', 'AUR62005667' => 'cqu', 'AUR62007634' => 'cqu', 'AUR62008186' => 'cqu', 'AUR62008187' => 'cqu', 'AUR62008188' => 'cqu', 'AUR62027954' => 'cqu', 'AUR62028766' => 'cqu', 'AUR62028767' => 'cqu', 'AUR62028768' => 'cqu', 'AUR62028886' => 'cqu', 'AUR62029563' => 'cqu', 'AUR62038832' => 'cqu', 'BcaB01g04149' => 'bca', 'BcaB03g12940' => 'bca', 'BcaB03g13090' => 'bca', 'BcaB03g14466' => 'bca', 'BcaB05g24035' => 'bca', 'BcaC01g06050' => 'bca', 'BcaC04g19148' => 'bca', 'BcaC04g20761' => 'bca', 'BcaC06g32845' => 'bca', 'BcaC07g41274' => 'bca', 'BcaC09g50827' => 'bca', 'BcaNung00741' => 'bca', 'BcaNung00742' => 'bca', 'BcaNung01859' => 'bca', 'BcaNung03985' => 'bca', 'BcaNung03989' => 'bca', 'BcaNung05661' => 'bca', 'BolC1t00257H' => 'bol', 'BolC1t01956H' => 'bol', 'BolC2t06534H' => 'bol', 'BolC3t14334H' => 'bol', 'BolC5t30451H' => 'bol', 'BolC7t45880H' => 'bol', 'BolC7t46586H' => 'bol', 'BolC8t49301H' => 'bol', 'BolC8t51837H' => 'bol', 'BolC9t56822H' => 'bol', 'BolC9t59235H' => 'bol', 'BraA01t00234Z' => 'bra', 'BraA01t01563Z' => 'bra', 'BraA02t05147Z' => 'bra', 'BraA03t10947Z' => 'bra', 'BraA03t14633Z' => 'bra', 'BraA08t35112Z' => 'bra', 'BraA09t41330Z' => 'bra', 'BraA10t44570Z' => 'bra', 'C01p02670' => 'bna', 'C01p20260' => 'bna', 'C02p05890' => 'bna', 'C03p19530' => 'bna', 'C05p17470' => 'bna', 'C07p53900' => 'bna', 'C07p61630' => 'bna', 'C08p16800' => 'bna', 'C08p42810' => 'bna', 'C09p39480' => 'bna', 'C09p63980' => 'bna', 'CAN.G1001.7' => 'can', 'CAN.G1034.55' => 'can', 'CAN.G143.7' => 'can', 'CAN.G3340.1' => 'can', 'CAN.G358.19' => 'can', 'CAN.G373.2' => 'can', 'CAN.G674.16' => 'can', 'CAN.G674.17' => 'can', 'CAN.G674.18' => 'can', 'CAN.G732.2' => 'can', 'CAN.G732.3' => 'can', 'CAN.G993.39' => 'can', 'CANSAT01G2052' => 'cansat', 'CANSAT80G0070' => 'cansat', 'CANSAT80G0483' => 'cansat', 'CANSAT80G0625' => 'cansat', 'CARHR019690' => 'chi', 'CARHR080280' => 'chi', 'CARHR152750' => 'chi', 'CARHR152760' => 'chi', 'CARHR152770' => 'chi', 'CARHR200340' => 'chi', 'CARHR232370' => 'chi', 'CARHR244670' => 'chi', 'CARHR244680' => 'chi', 'CARHR257520' => 'chi', 'Carub.0001s1872' => 'cru', 'Carub.0006s1130' => 'cru', 'Carub.0007s0396' => 'cru', 'Carub.0007s0397' => 'cru', 'Carub.0007s1608' => 'cru', 'Carub.0008s1068' => 'cru', 'Carub.0008s1077' => 'cru', 'Ca_16158_v3' => 'car', 'Ca_17571_v3' => 'car', 'Ca_21936_v3' => 'car', 'Ca_22350_v3' => 'car', 'CBR_g22445' => 'cbr', 'CBR_g26290' => 'cbr', 'Cc04_g09610' => 'ccan', 'Cc04_g12280' => 'ccan', 'Cc07_g10230' => 'ccan', 'CDE02G0093' => 'cde', 'CDE02G0701' => 'cde', 'CDE04G1050' => 'cde', 'CDE05G1833' => 'cde', 'CDE05G3058' => 'cde', 'CDE05G3380' => 'cde', 'CDE06G0536' => 'cde', 'Cfa006923' => 'cfa', 'Cfa009402' => 'cfa', 'Cfa018751' => 'cfa', 'Cfa019164' => 'cfa', 'Cfa022935' => 'cfa', 'Ciclev10019081m.g' => 'ccl', 'Ciclev10025076m.g' => 'ccl', 'Ciclev10030712m.g' => 'ccl', 'Ciclev10033760m.g' => 'ccl', 'CiPaw.05G105600' => 'cil', 'CiPaw.08G136700' => 'cil', 'CiPaw.11G003900' => 'cil', 'CiPaw.11G023700' => 'cil', 'CiPaw.12G003700' => 'cil', 'ClCG06G017100' => 'cla', 'ClCG06G018110' => 'cla', 'ClCG07G008800' => 'cla', 'ClCG07G015330' => 'cla', 'COL.COLO4_13698' => 'col', 'COL.COLO4_16659' => 'col', 'COL.COLO4_21986' => 'col', 'COL.COLO4_24049' => 'col', 'COL.COLO4_29061' => 'col', 'COL.COLO4_29075' => 'col', 'COL.COLO4_30094' => 'col', 'Cpa.g.c33689' => 'cpa', 'Cpa.g.sc108.39' => 'cpa', 'Cpa.g.sc108.41' => 'cpa', 'Cpa.g.sc1163.1' => 'cpa', 'Cpa.g.sc4.155' => 'cpa', 'Cpa.g.sc6.194' => 'cpa', 'CsaV3_1G000340' => 'csa', 'CsaV3_1G001400' => 'csa', 'CsaV3_4G002220' => 'csa', 'CsaV3_4G005370' => 'csa', 'CSS0007487' => 'camsi', 'CSS0008066' => 'camsi', 'CSS0009120' => 'camsi', 'CSS0015512' => 'camsi', 'CSS0022409' => 'camsi', 'CSS0025358' => 'camsi', 'CSS0044547' => 'camsi', 'DCAR_013057' => 'dca', 'DCAR_015058' => 'dca', 'DCAR_016027' => 'dca', 'DCAR_017327' => 'dca', 'DCAR_020743' => 'dca', 'DCAR_026157' => 'dca', 'DCAR_032339' => 'dca', 'DCAR_032340' => 'dca', 'Dinv11200' => 'din', 'Dinv11201' => 'din', 'Dinv20631' => 'din', 'Dinv23182' => 'din', 'Dinv33466' => 'din', 'Dinv33583' => 'din', 'Dinv38565' => 'din', 'Duzib068G0200' => 'dzi', 'Duzib147G0132' => 'dzi', 'Duzib147G0635' => 'dzi', 'Duzib205G1670' => 'dzi', 'Duzib251G0606' => 'dzi', 'ECA232G3336' => 'eca', 'ECA232G3763' => 'eca', 'ECA232G4845' => 'eca', 'ECA234G1607' => 'eca', 'ECA246G0932' => 'eca', 'ECA247G0781' => 'eca', 'ECA247G1932' => 'eca', 'ECA247G2079' => 'eca', 'ECA247G3338' => 'eca', 'ECA247G4115' => 'eca', 'EL10Ac3g06552' => 'bvu', 'EL10Ac5g10721' => 'bvu', 'EL10Ac5g10722' => 'bvu', 'EL10Ac5g10723' => 'bvu', 'EL10Ac5g11361' => 'bvu', 'EL10Ac6g13553' => 'bvu', 'EL10As8g23872' => 'bvu', 'Eucgr.B00250' => 'egr', 'Eucgr.B00251' => 'egr', 'Eucgr.B03533' => 'egr', 'Eucgr.I02381' => 'egr', 'Eucgr.K02700' => 'egr', 'FAN02G0174' => 'fan', 'FAN02G3146' => 'fan', 'FAN04G1672' => 'fan', 'FAN04G2273' => 'fan', 'FAN05G2791' => 'fan', 'FAN05G4035' => 'fan', 'FAN07G0834' => 'fan', 'FAN08G1198' => 'fan', 'FAN09G4182' => 'fan', 'FAN12G0496' => 'fan', 'FAN13G1027' => 'fan', 'FAN13G2951' => 'fan', 'FAN14G0705' => 'fan', 'FAN14G0720' => 'fan', 'FAN17G0201' => 'fan', 'FAN17G2665' => 'fan', 'FAN18G1456' => 'fan', 'FAN18G1525' => 'fan', 'FAN18G3500' => 'fan', 'FAN28G2670' => 'fan', 'FvH4_1g12391' => 'fve', 'FvH4_4g23220' => 'fve', 'FvH4_5g08810' => 'fve', 'FvH4_5g28960' => 'fve', 'FvH4_6g42820' => 'fve', 'FvH4_6g51110' => 'fve', 'Glyma.02G051802' => 'gma', 'Glyma.04G185300' => 'gma', 'Glyma.05G202900' => 'gma', 'Glyma.08G010300' => 'gma', 'Glyma.16G131900' => 'gma', 'Glyma.17G087900' => 'gma', 'Gohir.A07G048600' => 'ghi', 'Gohir.A11G179000' => 'ghi', 'Gohir.A12G140900' => 'ghi', 'Gohir.A12G140950' => 'ghi', 'Gohir.A12G191700' => 'ghi', 'Gohir.A13G086300' => 'ghi', 'Gohir.D07G052900' => 'ghi', 'Gohir.D11G186600' => 'ghi', 'Gohir.D12G145575' => 'ghi', 'Gohir.D12G145650' => 'ghi', 'Gohir.D12G145725' => 'ghi', 'Gohir.D12G194050' => 'ghi', 'Gohir.D13G091800' => 'ghi', 'Gorai.001G055900' => 'gra', 'Gorai.007G198400' => 'gra', 'Gorai.008G157000' => 'gra', 'Gorai.008G157100' => 'gra', 'Gorai.008G208700' => 'gra', 'Gorai.010G138700' => 'gra', 'GSVIVG01000977001' => 'vvi', 'GSVIVG01007708001' => 'vvi', 'GSVIVG01008587001' => 'vvi', 'GSVIVG01018849001' => 'vvi', 'GSVIVG01032432001' => 'vvi', 'HanXRQChr02g0034131' => 'han', 'HanXRQChr02g0035981' => 'han', 'HanXRQChr02g0035991' => 'han', 'HanXRQChr05g0155611' => 'han', 'HanXRQChr05g0155621' => 'han', 'HanXRQChr08g0236501' => 'han', 'HanXRQChr09g0261321' => 'han', 'HanXRQChr09g0272081' => 'han', 'HanXRQChr10g0310741' => 'han', 'HanXRQChr11g0325591' => 'han', 'HanXRQChr12g0385691' => 'han', 'HanXRQChr13g0387801' => 'han', 'HanXRQChr15g0463011' => 'han', 'Haze_03826' => 'cav', 'Haze_03827' => 'cav', 'Haze_07183' => 'cav', 'Haze_07537' => 'cav', 'Haze_07539' => 'cav', 'Haze_12461' => 'cav', 'Haze_16115' => 'cav', 'Haze_16808' => 'cav', 'Haze_18531' => 'cav', 'Hma1.2p1_0046F.1_g026700' => 'hma', 'Hma1.2p1_0046F.1_g026710' => 'hma', 'Hma1.2p1_0168F.1_g074340' => 'hma', 'Hma1.2p1_0266F.1_g107030' => 'hma', 'Hma1.2p1_0266F.1_g107060' => 'hma', 'Hma1.2p1_0275F.1_g110510' => 'hma', 'Hma1.2p1_0592F.1_g185490' => 'hma', 'Hma1.2p1_0592F.1_g185500' => 'hma', 'Hma1.2p1_0592F.1_g185510' => 'hma', 'Hma1.2p1_0592F.1_g185520' => 'hma', 'Hma1.2p1_0592F.1_g185530' => 'hma', 'Hma1.2p1_0818F.1_g223450' => 'hma', 'HPP92_009708' => 'vpl', 'HPP92_009793' => 'vpl', 'HPP92_009796' => 'vpl', 'HPP92_009797' => 'vpl', 'HPP92_014940' => 'vpl', 'HPP92_014988' => 'vpl', 'Hund02463' => 'sun', 'Hund02760' => 'sun', 'Hund05071' => 'sun', 'Hund10108' => 'sun', 'Hund11204' => 'sun', 'Hund14016' => 'sun', 'Hund16464' => 'sun', 'Lalb_Chr09g0333391' => 'lal', 'Lalb_Chr11g0070461' => 'lal', 'Lalb_Chr12g0201671' => 'lal', 'Lalb_Chr13g0297161' => 'lal', 'Lj1g0002823' => 'lja', 'Lj3C1074T6' => 'lonja', 'Lj4A212T28' => 'lonja', 'Lj4g0005516' => 'lja', 'Lj4g0013705' => 'lja', 'Lj4g0027865' => 'lja', 'Lj5C92G16' => 'lonja', 'Lj5C92T12' => 'lonja', 'Lj7C596T3' => 'lonja', 'Lj9A446G59' => 'lonja', 'Lj9A482G21' => 'lonja', 'Lsat_1_v5_gn_1_28261' => 'lsa', 'Lsat_1_v5_gn_1_28281' => 'lsa', 'Lsat_1_v5_gn_1_32721' => 'lsa', 'Lsat_1_v5_gn_4_151760' => 'lsa', 'Lsat_1_v5_gn_4_2120' => 'lsa', 'Lsat_1_v5_gn_4_75761' => 'lsa', 'Lsat_1_v5_gn_5_10920' => 'lsa', 'Manes.02G099900' => 'mes', 'Manes.11G096200' => 'mes', 'Manes.12G007200' => 'mes', 'Manes.14G048300' => 'mes', 'Manes.17G114700' => 'mes', 'Mapoly0002s0070' => 'mpo', 'Mapoly0029s0099' => 'mpo', 'MBI07_g24742_MAGBIO' => 'mbi', 'MBI10_g27988_MAGBIO' => 'mbi', 'MBI11_g13057_MAGBIO' => 'mbi', 'MD02G1137200' => 'mdo', 'MD06G1137200' => 'mdo', 'MD07G1122300' => 'mdo', 'MD09G1078200' => 'mdo', 'MD13G1123700' => 'mdo', 'MD14G1151900' => 'mdo', 'MD17G1030900' => 'mdo', 'MD17G1068200' => 'mdo', 'MD17G1068600' => 'mdo', 'Medtr3g077540' => 'mtr', 'Medtr4g105530' => 'mtr', 'Medtr8g076580' => 'mtr', 'Medtr8g076590' => 'mtr', 'Medtr8g096410' => 'mtr', 'MELO3C016411.2' => 'cme', 'MELO3C017780.2' => 'cme', 'MELO3C022560.2' => 'cme', 'MELO3C026187.2' => 'cme', 'MELO3C026286.2' => 'cme', 'MELO3C032854.2' => 'cme', 'Migut.H02495' => 'egut', 'Migut.I00561' => 'egut', 'Migut.K01015' => 'egut', 'Migut.K01016' => 'egut', 'Migut.L00743' => 'egut', 'Migut.L00744' => 'egut', 'Migut.L00746' => 'egut', 'Migut.L00798' => 'egut', 'Migut.L00799' => 'egut', 'Migut.N02096' => 'egut', 'MSTRG.11259' => 'ama', 'MSTRG.23142' => 'ama', 'MSTRG.2499' => 'ama', 'Nitab4.5_0000003g0730' => 'nta', 'Nitab4.5_0000137g0020' => 'nta', 'Nitab4.5_0000721g0210' => 'nta', 'Nitab4.5_0000723g0050' => 'nta', 'Nitab4.5_0000913g0070' => 'nta', 'Nitab4.5_0001332g0040' => 'nta', 'Nitab4.5_0001771g0050' => 'nta', 'Nitab4.5_0001918g0050' => 'nta', 'Nitab4.5_0002686g0030' => 'nta', 'Nitab4.5_0003156g0020' => 'nta', 'Nitab4.5_0003383g0040' => 'nta', 'Nitab4.5_0003918g0010' => 'nta', 'Nitab4.5_0006760g0010' => 'nta', 'Nn1g05981' => 'nnu', 'Nn1g06288' => 'nnu', 'Nn3g16371' => 'nnu', 'Nn3g16786' => 'nnu', 'Nn4g22232' => 'nnu', 'Oeu005144.1' => 'oeu', 'Oeu005145.1' => 'oeu', 'Oeu011348.1' => 'oeu', 'Oeu016415.1' => 'oeu', 'Oeu023501.1' => 'oeu', 'Oeu044473.1' => 'oeu', 'Oeu048892.2' => 'oeu', 'Os01g0549200' => 'osa', 'Os02g0469300' => 'osa', 'Os04g0311100' => 'osa', 'Os06g0474900' => 'osa', 'Os10g0181700' => 'osa', 'Os11g0454800' => 'osa', 'Peaxi162Scf00037g00714' => 'pax', 'Peaxi162Scf00084g01217' => 'pax', 'Peaxi162Scf00257g00217' => 'pax', 'Peaxi162Scf00516g00215' => 'pax', 'Peaxi162Scf00689g00123' => 'pax', 'PGR044G2719' => 'pgr', 'PGR083G1360' => 'pgr', 'PGR102G2849' => 'pgr', 'PGR119G2534' => 'pgr', 'PGSC0003DMG400003538' => 'stu', 'PGSC0003DMG400028138' => 'stu', 'PGSC0003DMG400031732' => 'stu', 'PGSC0003DMG400038165' => 'stu', 'Phvul.002G284600' => 'pvu', 'Phvul.003G258200' => 'pvu', 'Phvul.009G176500' => 'pvu', 'Potri.003G167201' => 'ptr', 'Potri.005G118400' => 'ptr', 'Potri.012G089000' => 'ptr', 'Potri.012G102800' => 'ptr', 'Potri.015G079400' => 'ptr', 'Potri.015G100900' => 'ptr', 'Pp3c14_9810' => 'ppa', 'Pp3c15_10450' => 'ppa', 'Pp3c20_19150' => 'ppa', 'Pp3c23_12740' => 'ppa', 'Pp3c23_6310' => 'ppa', 'Pp3c24_3720' => 'ppa', 'Pp3c27_2580' => 'ppa', 'Pp3c9_8990' => 'ppa', 'PRCOL_00002854' => 'pco', 'Prupe.1G221200' => 'ppe', 'Prupe.3G289000' => 'ppe', 'Prupe.5G147000' => 'ppe', 'Prupe.6G157300' => 'ppe', 'Prupe.7G163400' => 'ppe', 'Psat0s2177g0040' => 'psa', 'Psat3g174760' => 'psa', 'Psat3g192160' => 'psa', 'Psat4g058520' => 'psa', 'Psat4g096840' => 'psa', 'Psat7g037320' => 'psa', 'PSO017G1274' => 'pso', 'PSO017G5166' => 'pso', 'PSO063G4558' => 'pso', 'PSO170G4458' => 'pso', 'PSO170G5005' => 'pso', 'PSO210G6156' => 'pso', 'PSO210G6635' => 'pso', 'PSO210G7397' => 'pso', 'PSO210G7700' => 'pso', 'PSO455G0035' => 'pso', 'PSO455G0180' => 'pso', 'PSO478G4515' => 'pso', 'PSO832G1305' => 'pso', 'PSO832G3489' => 'pso', 'QL02p075247' => 'qlo', 'QL03p051148' => 'qlo', 'QL05p010313' => 'qlo', 'QL06p034627' => 'qlo', 'QL10p001889' => 'qlo', 'QL10p010846' => 'qlo', 'RcHm_v2.0_Chr1g0350621' => 'rch', 'RcHm_v2.0_Chr1g0350641' => 'rch', 'RcHm_v2.0_Chr2g0092891' => 'rch', 'RcHm_v2.0_Chr2g0100251' => 'rch', 'RcHm_v2.0_Chr2g0158661' => 'rch', 'RcHm_v2.0_Chr2g0172741' => 'rch', 'RcHm_v2.0_Chr4g0429571' => 'rch', 'RcHm_v2.0_Chr5g0042471' => 'rch', 'RcHm_v2.0_Chr7g0189451' => 'rch', 'Rhsim08G0052000' => 'rsi', 'Rhsim08G0174400' => 'rsi', 'Rhsim08G0193200' => 'rsi', 'Rhsim10G0214800' => 'rsi', 'Rhsim10G0214900' => 'rsi', 'Rhsim10G0215000' => 'rsi', 'Rhsim12G0022900' => 'rsi', 'Rhsim12G0177500' => 'rsi', 'Rhsim12G0177700' => 'rsi', 'Sabra03G0122600' => 'sbr', 'Sabra05G0097400' => 'sbr', 'Sabra12G0064100' => 'sbr', 'Sabra15G0121300' => 'sbr', 'SalBow2G0642' => 'sbo', 'SalBow5G2667' => 'sbo', 'SalBow5G4873' => 'sbo', 'SalBow8G2395' => 'sbo', 'Sc03g0003290' => 'sci', 'Sc10g0010130' => 'sci', 'Sc22g0003650' => 'sci', 'Sed0001603' => 'sed', 'Sed0004259' => 'sed', 'Sed0006789' => 'sed', 'Sed0011838' => 'sed', 'Sed0012964' => 'sed', 'Sed0016383' => 'sed', 'Sed0019010' => 'sed', 'Sed0020188' => 'sed', 'SEGI_04702' => 'sgi', 'SEGI_17231' => 'sgi', 'SEGI_18877' => 'sgi', 'SEGI_25196' => 'sgi', 'SEGI_25515' => 'sgi', 'SEGI_28445' => 'sgi', 'SEGI_37452' => 'sgi', 'SGA_v2.0_scaffold188G40336' => 'sas', 'SGA_v2.0_scaffold228G43247' => 'sas', 'SGA_v2.0_scaffold280G46853' => 'sas', 'SGA_v2.0_scaffold34G13808' => 'sas', 'SGA_v2.0_scaffold40G15576' => 'sas', 'SGA_v2.0_scaffold611G53188' => 'sas', 'SGA_v2.0_scaffold78G25461' => 'sas', 'SGA_v2.0_scaffold90G27888' => 'sas', 'SHI08601' => 'shi', 'SHI08606' => 'shi', 'SHI17117' => 'shi', 'SHI17119' => 'shi', 'SMO118G0201' => 'smo', 'SMO169G0247' => 'smo', 'SMO176G0006' => 'smo', 'SMO176G0015' => 'smo', 'SMO202G0006' => 'smo', 'SMO240G0050' => 'smo', 'SMO286G0009' => 'smo', 'SMO338G0033' => 'smo', 'SMO356G0533' => 'smo', 'SMO364G0382' => 'smo', 'SMO367G0166' => 'smo', 'SMO367G1098' => 'smo', 'Solyc01g009920.3' => 'sly', 'Solyc01g099300.3' => 'sly', 'Solyc02g084700.3' => 'sly', 'Solyc03g097520.3' => 'sly', 'Solyc06g071580.3' => 'sly', 'Solyc10g081760.3' => 'sly', 'Sopen01g005480' => 'spe', 'Sopen01g042850' => 'spe', 'Sopen02g029370' => 'spe', 'Sopen03g028280' => 'spe', 'Sopen06g027870' => 'spe', 'Sopen10g032270' => 'spe', 'Sp5g18180' => 'spa', 'Sp6g12880' => 'spa', 'Sp6g30850' => 'spa', 'Sp7g22960' => 'spa', 'Sp7g34010' => 'spa', 'SpUn1326_0010' => 'spa', 'TAR371G0242' => 'tar', 'TAR622G0638' => 'tar', 'TAR628G1548' => 'tar', 'TAR629G1079' => 'tar', 'TAR629G3413' => 'tar', 'THA.LOC104804249' => 'tha', 'THA.LOC104808315' => 'tha', 'THA.LOC104809238' => 'tha', 'THA.LOC104825484' => 'tha', 'Thecc.01G025500' => 'tca', 'Thecc.03G015800' => 'tca', 'Thecc.03G018000' => 'tca', 'Thecc.03G134800' => 'tca', 'Thecc.04G014700' => 'tca', 'Thhalv10006991m.g' => 'esa', 'Thhalv10012707m.g' => 'esa', 'Thhalv10015739m.g' => 'esa', 'Thhalv10024553m.g' => 'esa', 'Thhalv10024673m.g' => 'esa', 'Thhalv10029187m.g' => 'esa', 'TPR.G12971' => 'tpr', 'TPR.G29396' => 'tpr', 'TPR.G33376' => 'tpr', 'TPR.G35508' => 'tpr', 'TPR.G35516' => 'tpr', 'TPR.G37317' => 'tpr', 'TPR.G37389' => 'tpr', 'TPR.G37523' => 'tpr', 'TPR.G559' => 'tpr', 'TWI14G0070' => 'twi', 'TWI14G0729' => 'twi', 'TWI18G0596' => 'twi', 'TWI39G0780' => 'twi', 'TWI39G0850' => 'twi', 'TWI73G1052' => 'twi', 'unitig_52.g17485' => 'ugi', 'unitig_61.g26355' => 'ugi', 'vmacro01040' => 'vma', 'vmacro16731' => 'vma', 'vmacro18270' => 'vma', 'vmacro19142' => 'vma', 'vmacro19407' => 'vma', 'vmacro19408' => 'vma', 'vmacro21899' => 'vma', 'vmacro21900' => 'vma', 'vmacro21901' => 'vma', 'VMungo0251G0490' => 'vmu', 'VMungo0251G1748' => 'vmu', 'VMungo1309G0421' => 'vmu', 'Zm00001eb086500' => 'zma', 'Zm00001eb150680' => 'zma', 'Zm00001eb162330' => 'zma', 'Zm00001eb203130' => 'zma', 'Zm00001eb369480' => 'zma', 'Zm00001eb382340' => 'zma', 'Zm00001eb416360' => 'zma' ) $gf_id = 'HOM05D000902' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000902' ) $data_identifier = 'HOM05D000902' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 13, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 10, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 6, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 9, 'hma' => (int) 12, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 4, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 6, 'ppa' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 6, 'rch' => (int) 9, 'rsi' => (int) 9, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 12, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 3, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416360' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000902', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '663', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02470' => 'bna', 'A01p16260' => 'bna', 'A02p01680' => 'bna', 'A03p16600' => 'bna', 'A03p55660' => 'bna', 'A03p64160' => 'bna', 'A03p64170' => 'bna', 'A08p31900' => 'bna', 'A09p59530' => 'bna', 'A10p08230' => 'bna', 'A10p25090' => 'bna', 'Aa31LG3G7100' => 'aar', 'Aa31LG3G7110' => 'aar', 'Aa31LG6G13160' => 'aar', 'Aa31LG7G10770' => 'aar', 'Aa31LG7G3830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2723' => 'aag', 'Actinidia08045' => 'ach', 'Actinidia08888' => 'ach', 'Actinidia18333' => 'ach', 'Actinidia19334' => 'ach', 'Actinidia25552' => 'ach', 'Actinidia26089' => 'ach', 'Actinidia30615' => 'ach', 'Actinidia30616' => 'ach', 'Actinidia33083' => 'ach', 'Actinidia35762' => 'ach', 'Ah.02g110620' => 'amhyb', 'Ah.11g046390' => 'amhyb', 'AL1G31670' => 'aly', 'AL6G23730' => 'aly', 'AL7G14740' => 'aly', 'AL7G14750' => 'aly', 'AL7G14760' => 'aly', 'AL7G28220' => 'aly', 'AL8G24940' => 'aly', 'Aqoxy3G01665' => 'aox', 'Aqoxy3G02853' => 'aox', 'Aqoxy5G01513' => 'aox', 'Aqoxy5G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8SKA4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ75LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKDA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0LJZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7REX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZP4YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWX7I5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2QKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS0L9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPCD8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q161UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC7XCF' => 'arhy', 'AT1G19100' => 'ath', 'AT4G24970' => 'ath', 'AT4G36270' => 'ath', 'AT4G36280' => 'ath', 'AT4G36290' => 'ath', 'AT5G13130' => 'ath', 'AT5G50780' => 'ath', 'ATR0582G266' => 'atr', 'ATR0661G195' => 'atr', 'ATR1152G031' => 'atr', 'Atru.chr11.2382' => 'acertr', 'Atru.chr12.2337' => 'acertr', 'Atru.chr3.744' => 'acertr', 'Atru.chr6.1870' => 'acertr', 'Atru.chr9.2515' => 'acertr', 'AUR62004120' => 'cqu', 'AUR62005667' => 'cqu', 'AUR62007634' => 'cqu', 'AUR62008186' => 'cqu', 'AUR62008187' => 'cqu', 'AUR62008188' => 'cqu', 'AUR62027954' => 'cqu', 'AUR62028766' => 'cqu', 'AUR62028767' => 'cqu', 'AUR62028768' => 'cqu', 'AUR62028886' => 'cqu', 'AUR62029563' => 'cqu', 'AUR62038832' => 'cqu', 'BcaB01g04149' => 'bca', 'BcaB03g12940' => 'bca', 'BcaB03g13090' => 'bca', 'BcaB03g14466' => 'bca', 'BcaB05g24035' => 'bca', 'BcaC01g06050' => 'bca', 'BcaC04g19148' => 'bca', 'BcaC04g20761' => 'bca', 'BcaC06g32845' => 'bca', 'BcaC07g41274' => 'bca', 'BcaC09g50827' => 'bca', 'BcaNung00741' => 'bca', 'BcaNung00742' => 'bca', 'BcaNung01859' => 'bca', 'BcaNung03985' => 'bca', 'BcaNung03989' => 'bca', 'BcaNung05661' => 'bca', 'BolC1t00257H' => 'bol', 'BolC1t01956H' => 'bol', 'BolC2t06534H' => 'bol', 'BolC3t14334H' => 'bol', 'BolC5t30451H' => 'bol', 'BolC7t45880H' => 'bol', 'BolC7t46586H' => 'bol', 'BolC8t49301H' => 'bol', 'BolC8t51837H' => 'bol', 'BolC9t56822H' => 'bol', 'BolC9t59235H' => 'bol', 'BraA01t00234Z' => 'bra', 'BraA01t01563Z' => 'bra', 'BraA02t05147Z' => 'bra', 'BraA03t10947Z' => 'bra', 'BraA03t14633Z' => 'bra', 'BraA08t35112Z' => 'bra', 'BraA09t41330Z' => 'bra', 'BraA10t44570Z' => 'bra', 'C01p02670' => 'bna', 'C01p20260' => 'bna', 'C02p05890' => 'bna', 'C03p19530' => 'bna', 'C05p17470' => 'bna', 'C07p53900' => 'bna', 'C07p61630' => 'bna', 'C08p16800' => 'bna', 'C08p42810' => 'bna', 'C09p39480' => 'bna', 'C09p63980' => 'bna', 'CAN.G1001.7' => 'can', 'CAN.G1034.55' => 'can', 'CAN.G143.7' => 'can', 'CAN.G3340.1' => 'can', 'CAN.G358.19' => 'can', 'CAN.G373.2' => 'can', 'CAN.G674.16' => 'can', 'CAN.G674.17' => 'can', 'CAN.G674.18' => 'can', 'CAN.G732.2' => 'can', 'CAN.G732.3' => 'can', 'CAN.G993.39' => 'can', 'CANSAT01G2052' => 'cansat', 'CANSAT80G0070' => 'cansat', 'CANSAT80G0483' => 'cansat', 'CANSAT80G0625' => 'cansat', 'CARHR019690' => 'chi', 'CARHR080280' => 'chi', 'CARHR152750' => 'chi', 'CARHR152760' => 'chi', 'CARHR152770' => 'chi', 'CARHR200340' => 'chi', 'CARHR232370' => 'chi', 'CARHR244670' => 'chi', 'CARHR244680' => 'chi', 'CARHR257520' => 'chi', 'Carub.0001s1872' => 'cru', 'Carub.0006s1130' => 'cru', 'Carub.0007s0396' => 'cru', 'Carub.0007s0397' => 'cru', 'Carub.0007s1608' => 'cru', 'Carub.0008s1068' => 'cru', 'Carub.0008s1077' => 'cru', 'Ca_16158_v3' => 'car', 'Ca_17571_v3' => 'car', 'Ca_21936_v3' => 'car', 'Ca_22350_v3' => 'car', 'CBR_g22445' => 'cbr', 'CBR_g26290' => 'cbr', 'Cc04_g09610' => 'ccan', 'Cc04_g12280' => 'ccan', 'Cc07_g10230' => 'ccan', 'CDE02G0093' => 'cde', 'CDE02G0701' => 'cde', 'CDE04G1050' => 'cde', 'CDE05G1833' => 'cde', 'CDE05G3058' => 'cde', 'CDE05G3380' => 'cde', 'CDE06G0536' => 'cde', 'Cfa006923' => 'cfa', 'Cfa009402' => 'cfa', 'Cfa018751' => 'cfa', 'Cfa019164' => 'cfa', 'Cfa022935' => 'cfa', 'Ciclev10019081m.g' => 'ccl', 'Ciclev10025076m.g' => 'ccl', 'Ciclev10030712m.g' => 'ccl', 'Ciclev10033760m.g' => 'ccl', 'CiPaw.05G105600' => 'cil', 'CiPaw.08G136700' => 'cil', 'CiPaw.11G003900' => 'cil', 'CiPaw.11G023700' => 'cil', 'CiPaw.12G003700' => 'cil', 'ClCG06G017100' => 'cla', 'ClCG06G018110' => 'cla', 'ClCG07G008800' => 'cla', 'ClCG07G015330' => 'cla', 'COL.COLO4_13698' => 'col', 'COL.COLO4_16659' => 'col', 'COL.COLO4_21986' => 'col', 'COL.COLO4_24049' => 'col', 'COL.COLO4_29061' => 'col', 'COL.COLO4_29075' => 'col', 'COL.COLO4_30094' => 'col', 'Cpa.g.c33689' => 'cpa', 'Cpa.g.sc108.39' => 'cpa', 'Cpa.g.sc108.41' => 'cpa', 'Cpa.g.sc1163.1' => 'cpa', 'Cpa.g.sc4.155' => 'cpa', 'Cpa.g.sc6.194' => 'cpa', 'CsaV3_1G000340' => 'csa', 'CsaV3_1G001400' => 'csa', 'CsaV3_4G002220' => 'csa', 'CsaV3_4G005370' => 'csa', 'CSS0007487' => 'camsi', 'CSS0008066' => 'camsi', 'CSS0009120' => 'camsi', 'CSS0015512' => 'camsi', 'CSS0022409' => 'camsi', 'CSS0025358' => 'camsi', 'CSS0044547' => 'camsi', 'DCAR_013057' => 'dca', 'DCAR_015058' => 'dca', 'DCAR_016027' => 'dca', 'DCAR_017327' => 'dca', 'DCAR_020743' => 'dca', 'DCAR_026157' => 'dca', 'DCAR_032339' => 'dca', 'DCAR_032340' => 'dca', 'Dinv11200' => 'din', 'Dinv11201' => 'din', 'Dinv20631' => 'din', 'Dinv23182' => 'din', 'Dinv33466' => 'din', 'Dinv33583' => 'din', 'Dinv38565' => 'din', 'Duzib068G0200' => 'dzi', 'Duzib147G0132' => 'dzi', 'Duzib147G0635' => 'dzi', 'Duzib205G1670' => 'dzi', 'Duzib251G0606' => 'dzi', 'ECA232G3336' => 'eca', 'ECA232G3763' => 'eca', 'ECA232G4845' => 'eca', 'ECA234G1607' => 'eca', 'ECA246G0932' => 'eca', 'ECA247G0781' => 'eca', 'ECA247G1932' => 'eca', 'ECA247G2079' => 'eca', 'ECA247G3338' => 'eca', 'ECA247G4115' => 'eca', 'EL10Ac3g06552' => 'bvu', 'EL10Ac5g10721' => 'bvu', 'EL10Ac5g10722' => 'bvu', 'EL10Ac5g10723' => 'bvu', 'EL10Ac5g11361' => 'bvu', 'EL10Ac6g13553' => 'bvu', 'EL10As8g23872' => 'bvu', 'Eucgr.B00250' => 'egr', 'Eucgr.B00251' => 'egr', 'Eucgr.B03533' => 'egr', 'Eucgr.I02381' => 'egr', 'Eucgr.K02700' => 'egr', 'FAN02G0174' => 'fan', 'FAN02G3146' => 'fan', 'FAN04G1672' => 'fan', 'FAN04G2273' => 'fan', 'FAN05G2791' => 'fan', 'FAN05G4035' => 'fan', 'FAN07G0834' => 'fan', 'FAN08G1198' => 'fan', 'FAN09G4182' => 'fan', 'FAN12G0496' => 'fan', 'FAN13G1027' => 'fan', 'FAN13G2951' => 'fan', 'FAN14G0705' => 'fan', 'FAN14G0720' => 'fan', 'FAN17G0201' => 'fan', 'FAN17G2665' => 'fan', 'FAN18G1456' => 'fan', 'FAN18G1525' => 'fan', 'FAN18G3500' => 'fan', 'FAN28G2670' => 'fan', 'FvH4_1g12391' => 'fve', 'FvH4_4g23220' => 'fve', 'FvH4_5g08810' => 'fve', 'FvH4_5g28960' => 'fve', 'FvH4_6g42820' => 'fve', 'FvH4_6g51110' => 'fve', 'Glyma.02G051802' => 'gma', 'Glyma.04G185300' => 'gma', 'Glyma.05G202900' => 'gma', 'Glyma.08G010300' => 'gma', 'Glyma.16G131900' => 'gma', 'Glyma.17G087900' => 'gma', 'Gohir.A07G048600' => 'ghi', 'Gohir.A11G179000' => 'ghi', 'Gohir.A12G140900' => 'ghi', 'Gohir.A12G140950' => 'ghi', 'Gohir.A12G191700' => 'ghi', 'Gohir.A13G086300' => 'ghi', 'Gohir.D07G052900' => 'ghi', 'Gohir.D11G186600' => 'ghi', 'Gohir.D12G145575' => 'ghi', 'Gohir.D12G145650' => 'ghi', 'Gohir.D12G145725' => 'ghi', 'Gohir.D12G194050' => 'ghi', 'Gohir.D13G091800' => 'ghi', 'Gorai.001G055900' => 'gra', 'Gorai.007G198400' => 'gra', 'Gorai.008G157000' => 'gra', 'Gorai.008G157100' => 'gra', 'Gorai.008G208700' => 'gra', 'Gorai.010G138700' => 'gra', 'GSVIVG01000977001' => 'vvi', 'GSVIVG01007708001' => 'vvi', 'GSVIVG01008587001' => 'vvi', 'GSVIVG01018849001' => 'vvi', 'GSVIVG01032432001' => 'vvi', 'HanXRQChr02g0034131' => 'han', 'HanXRQChr02g0035981' => 'han', 'HanXRQChr02g0035991' => 'han', 'HanXRQChr05g0155611' => 'han', 'HanXRQChr05g0155621' => 'han', 'HanXRQChr08g0236501' => 'han', 'HanXRQChr09g0261321' => 'han', 'HanXRQChr09g0272081' => 'han', 'HanXRQChr10g0310741' => 'han', 'HanXRQChr11g0325591' => 'han', 'HanXRQChr12g0385691' => 'han', 'HanXRQChr13g0387801' => 'han', 'HanXRQChr15g0463011' => 'han', 'Haze_03826' => 'cav', 'Haze_03827' => 'cav', 'Haze_07183' => 'cav', 'Haze_07537' => 'cav', 'Haze_07539' => 'cav', 'Haze_12461' => 'cav', 'Haze_16115' => 'cav', 'Haze_16808' => 'cav', 'Haze_18531' => 'cav', 'Hma1.2p1_0046F.1_g026700' => 'hma', 'Hma1.2p1_0046F.1_g026710' => 'hma', 'Hma1.2p1_0168F.1_g074340' => 'hma', 'Hma1.2p1_0266F.1_g107030' => 'hma', 'Hma1.2p1_0266F.1_g107060' => 'hma', 'Hma1.2p1_0275F.1_g110510' => 'hma', 'Hma1.2p1_0592F.1_g185490' => 'hma', 'Hma1.2p1_0592F.1_g185500' => 'hma', 'Hma1.2p1_0592F.1_g185510' => 'hma', 'Hma1.2p1_0592F.1_g185520' => 'hma', 'Hma1.2p1_0592F.1_g185530' => 'hma', 'Hma1.2p1_0818F.1_g223450' => 'hma', 'HPP92_009708' => 'vpl', 'HPP92_009793' => 'vpl', 'HPP92_009796' => 'vpl', 'HPP92_009797' => 'vpl', 'HPP92_014940' => 'vpl', 'HPP92_014988' => 'vpl', 'Hund02463' => 'sun', 'Hund02760' => 'sun', 'Hund05071' => 'sun', 'Hund10108' => 'sun', 'Hund11204' => 'sun', 'Hund14016' => 'sun', 'Hund16464' => 'sun', 'Lalb_Chr09g0333391' => 'lal', 'Lalb_Chr11g0070461' => 'lal', 'Lalb_Chr12g0201671' => 'lal', 'Lalb_Chr13g0297161' => 'lal', 'Lj1g0002823' => 'lja', 'Lj3C1074T6' => 'lonja', 'Lj4A212T28' => 'lonja', 'Lj4g0005516' => 'lja', 'Lj4g0013705' => 'lja', 'Lj4g0027865' => 'lja', 'Lj5C92G16' => 'lonja', 'Lj5C92T12' => 'lonja', 'Lj7C596T3' => 'lonja', 'Lj9A446G59' => 'lonja', 'Lj9A482G21' => 'lonja', 'Lsat_1_v5_gn_1_28261' => 'lsa', 'Lsat_1_v5_gn_1_28281' => 'lsa', 'Lsat_1_v5_gn_1_32721' => 'lsa', 'Lsat_1_v5_gn_4_151760' => 'lsa', 'Lsat_1_v5_gn_4_2120' => 'lsa', 'Lsat_1_v5_gn_4_75761' => 'lsa', 'Lsat_1_v5_gn_5_10920' => 'lsa', 'Manes.02G099900' => 'mes', 'Manes.11G096200' => 'mes', 'Manes.12G007200' => 'mes', 'Manes.14G048300' => 'mes', 'Manes.17G114700' => 'mes', 'Mapoly0002s0070' => 'mpo', 'Mapoly0029s0099' => 'mpo', 'MBI07_g24742_MAGBIO' => 'mbi', 'MBI10_g27988_MAGBIO' => 'mbi', 'MBI11_g13057_MAGBIO' => 'mbi', 'MD02G1137200' => 'mdo', 'MD06G1137200' => 'mdo', 'MD07G1122300' => 'mdo', 'MD09G1078200' => 'mdo', 'MD13G1123700' => 'mdo', 'MD14G1151900' => 'mdo', 'MD17G1030900' => 'mdo', 'MD17G1068200' => 'mdo', 'MD17G1068600' => 'mdo', 'Medtr3g077540' => 'mtr', 'Medtr4g105530' => 'mtr', 'Medtr8g076580' => 'mtr', 'Medtr8g076590' => 'mtr', 'Medtr8g096410' => 'mtr', 'MELO3C016411.2' => 'cme', 'MELO3C017780.2' => 'cme', 'MELO3C022560.2' => 'cme', 'MELO3C026187.2' => 'cme', 'MELO3C026286.2' => 'cme', 'MELO3C032854.2' => 'cme', 'Migut.H02495' => 'egut', 'Migut.I00561' => 'egut', 'Migut.K01015' => 'egut', 'Migut.K01016' => 'egut', 'Migut.L00743' => 'egut', 'Migut.L00744' => 'egut', 'Migut.L00746' => 'egut', 'Migut.L00798' => 'egut', 'Migut.L00799' => 'egut', 'Migut.N02096' => 'egut', 'MSTRG.11259' => 'ama', 'MSTRG.23142' => 'ama', 'MSTRG.2499' => 'ama', 'Nitab4.5_0000003g0730' => 'nta', 'Nitab4.5_0000137g0020' => 'nta', 'Nitab4.5_0000721g0210' => 'nta', 'Nitab4.5_0000723g0050' => 'nta', 'Nitab4.5_0000913g0070' => 'nta', 'Nitab4.5_0001332g0040' => 'nta', 'Nitab4.5_0001771g0050' => 'nta', 'Nitab4.5_0001918g0050' => 'nta', 'Nitab4.5_0002686g0030' => 'nta', 'Nitab4.5_0003156g0020' => 'nta', 'Nitab4.5_0003383g0040' => 'nta', 'Nitab4.5_0003918g0010' => 'nta', 'Nitab4.5_0006760g0010' => 'nta', 'Nn1g05981' => 'nnu', 'Nn1g06288' => 'nnu', 'Nn3g16371' => 'nnu', 'Nn3g16786' => 'nnu', 'Nn4g22232' => 'nnu', 'Oeu005144.1' => 'oeu', 'Oeu005145.1' => 'oeu', 'Oeu011348.1' => 'oeu', 'Oeu016415.1' => 'oeu', 'Oeu023501.1' => 'oeu', 'Oeu044473.1' => 'oeu', 'Oeu048892.2' => 'oeu', 'Os01g0549200' => 'osa', 'Os02g0469300' => 'osa', 'Os04g0311100' => 'osa', 'Os06g0474900' => 'osa', 'Os10g0181700' => 'osa', 'Os11g0454800' => 'osa', 'Peaxi162Scf00037g00714' => 'pax', 'Peaxi162Scf00084g01217' => 'pax', 'Peaxi162Scf00257g00217' => 'pax', 'Peaxi162Scf00516g00215' => 'pax', 'Peaxi162Scf00689g00123' => 'pax', 'PGR044G2719' => 'pgr', 'PGR083G1360' => 'pgr', 'PGR102G2849' => 'pgr', 'PGR119G2534' => 'pgr', 'PGSC0003DMG400003538' => 'stu', 'PGSC0003DMG400028138' => 'stu', 'PGSC0003DMG400031732' => 'stu', 'PGSC0003DMG400038165' => 'stu', 'Phvul.002G284600' => 'pvu', 'Phvul.003G258200' => 'pvu', 'Phvul.009G176500' => 'pvu', 'Potri.003G167201' => 'ptr', 'Potri.005G118400' => 'ptr', 'Potri.012G089000' => 'ptr', 'Potri.012G102800' => 'ptr', 'Potri.015G079400' => 'ptr', 'Potri.015G100900' => 'ptr', 'Pp3c14_9810' => 'ppa', 'Pp3c15_10450' => 'ppa', 'Pp3c20_19150' => 'ppa', 'Pp3c23_12740' => 'ppa', 'Pp3c23_6310' => 'ppa', 'Pp3c24_3720' => 'ppa', 'Pp3c27_2580' => 'ppa', 'Pp3c9_8990' => 'ppa', 'PRCOL_00002854' => 'pco', 'Prupe.1G221200' => 'ppe', 'Prupe.3G289000' => 'ppe', 'Prupe.5G147000' => 'ppe', 'Prupe.6G157300' => 'ppe', 'Prupe.7G163400' => 'ppe', 'Psat0s2177g0040' => 'psa', 'Psat3g174760' => 'psa', 'Psat3g192160' => 'psa', 'Psat4g058520' => 'psa', 'Psat4g096840' => 'psa', 'Psat7g037320' => 'psa', 'PSO017G1274' => 'pso', 'PSO017G5166' => 'pso', 'PSO063G4558' => 'pso', 'PSO170G4458' => 'pso', 'PSO170G5005' => 'pso', 'PSO210G6156' => 'pso', 'PSO210G6635' => 'pso', 'PSO210G7397' => 'pso', 'PSO210G7700' => 'pso', 'PSO455G0035' => 'pso', 'PSO455G0180' => 'pso', 'PSO478G4515' => 'pso', 'PSO832G1305' => 'pso', 'PSO832G3489' => 'pso', 'QL02p075247' => 'qlo', 'QL03p051148' => 'qlo', 'QL05p010313' => 'qlo', 'QL06p034627' => 'qlo', 'QL10p001889' => 'qlo', 'QL10p010846' => 'qlo', 'RcHm_v2.0_Chr1g0350621' => 'rch', 'RcHm_v2.0_Chr1g0350641' => 'rch', 'RcHm_v2.0_Chr2g0092891' => 'rch', 'RcHm_v2.0_Chr2g0100251' => 'rch', 'RcHm_v2.0_Chr2g0158661' => 'rch', 'RcHm_v2.0_Chr2g0172741' => 'rch', 'RcHm_v2.0_Chr4g0429571' => 'rch', 'RcHm_v2.0_Chr5g0042471' => 'rch', 'RcHm_v2.0_Chr7g0189451' => 'rch', 'Rhsim08G0052000' => 'rsi', 'Rhsim08G0174400' => 'rsi', 'Rhsim08G0193200' => 'rsi', 'Rhsim10G0214800' => 'rsi', 'Rhsim10G0214900' => 'rsi', 'Rhsim10G0215000' => 'rsi', 'Rhsim12G0022900' => 'rsi', 'Rhsim12G0177500' => 'rsi', 'Rhsim12G0177700' => 'rsi', 'Sabra03G0122600' => 'sbr', 'Sabra05G0097400' => 'sbr', 'Sabra12G0064100' => 'sbr', 'Sabra15G0121300' => 'sbr', 'SalBow2G0642' => 'sbo', 'SalBow5G2667' => 'sbo', 'SalBow5G4873' => 'sbo', 'SalBow8G2395' => 'sbo', 'Sc03g0003290' => 'sci', 'Sc10g0010130' => 'sci', 'Sc22g0003650' => 'sci', 'Sed0001603' => 'sed', 'Sed0004259' => 'sed', 'Sed0006789' => 'sed', 'Sed0011838' => 'sed', 'Sed0012964' => 'sed', 'Sed0016383' => 'sed', 'Sed0019010' => 'sed', 'Sed0020188' => 'sed', 'SEGI_04702' => 'sgi', 'SEGI_17231' => 'sgi', 'SEGI_18877' => 'sgi', 'SEGI_25196' => 'sgi', 'SEGI_25515' => 'sgi', 'SEGI_28445' => 'sgi', 'SEGI_37452' => 'sgi', 'SGA_v2.0_scaffold188G40336' => 'sas', 'SGA_v2.0_scaffold228G43247' => 'sas', 'SGA_v2.0_scaffold280G46853' => 'sas', 'SGA_v2.0_scaffold34G13808' => 'sas', 'SGA_v2.0_scaffold40G15576' => 'sas', 'SGA_v2.0_scaffold611G53188' => 'sas', 'SGA_v2.0_scaffold78G25461' => 'sas', 'SGA_v2.0_scaffold90G27888' => 'sas', 'SHI08601' => 'shi', 'SHI08606' => 'shi', 'SHI17117' => 'shi', 'SHI17119' => 'shi', 'SMO118G0201' => 'smo', 'SMO169G0247' => 'smo', 'SMO176G0006' => 'smo', 'SMO176G0015' => 'smo', 'SMO202G0006' => 'smo', 'SMO240G0050' => 'smo', 'SMO286G0009' => 'smo', 'SMO338G0033' => 'smo', 'SMO356G0533' => 'smo', 'SMO364G0382' => 'smo', 'SMO367G0166' => 'smo', 'SMO367G1098' => 'smo', 'Solyc01g009920.3' => 'sly', 'Solyc01g099300.3' => 'sly', 'Solyc02g084700.3' => 'sly', 'Solyc03g097520.3' => 'sly', 'Solyc06g071580.3' => 'sly', 'Solyc10g081760.3' => 'sly', 'Sopen01g005480' => 'spe', 'Sopen01g042850' => 'spe', 'Sopen02g029370' => 'spe', 'Sopen03g028280' => 'spe', 'Sopen06g027870' => 'spe', 'Sopen10g032270' => 'spe', 'Sp5g18180' => 'spa', 'Sp6g12880' => 'spa', 'Sp6g30850' => 'spa', 'Sp7g22960' => 'spa', 'Sp7g34010' => 'spa', 'SpUn1326_0010' => 'spa', 'TAR371G0242' => 'tar', 'TAR622G0638' => 'tar', 'TAR628G1548' => 'tar', 'TAR629G1079' => 'tar', 'TAR629G3413' => 'tar', 'THA.LOC104804249' => 'tha', 'THA.LOC104808315' => 'tha', 'THA.LOC104809238' => 'tha', 'THA.LOC104825484' => 'tha', 'Thecc.01G025500' => 'tca', 'Thecc.03G015800' => 'tca', 'Thecc.03G018000' => 'tca', 'Thecc.03G134800' => 'tca', 'Thecc.04G014700' => 'tca', 'Thhalv10006991m.g' => 'esa', 'Thhalv10012707m.g' => 'esa', 'Thhalv10015739m.g' => 'esa', 'Thhalv10024553m.g' => 'esa', 'Thhalv10024673m.g' => 'esa', 'Thhalv10029187m.g' => 'esa', 'TPR.G12971' => 'tpr', 'TPR.G29396' => 'tpr', 'TPR.G33376' => 'tpr', 'TPR.G35508' => 'tpr', 'TPR.G35516' => 'tpr', 'TPR.G37317' => 'tpr', 'TPR.G37389' => 'tpr', 'TPR.G37523' => 'tpr', 'TPR.G559' => 'tpr', 'TWI14G0070' => 'twi', 'TWI14G0729' => 'twi', 'TWI18G0596' => 'twi', 'TWI39G0780' => 'twi', 'TWI39G0850' => 'twi', 'TWI73G1052' => 'twi', 'unitig_52.g17485' => 'ugi', 'unitig_61.g26355' => 'ugi', 'vmacro01040' => 'vma', 'vmacro16731' => 'vma', 'vmacro18270' => 'vma', 'vmacro19142' => 'vma', 'vmacro19407' => 'vma', 'vmacro19408' => 'vma', 'vmacro21899' => 'vma', 'vmacro21900' => 'vma', 'vmacro21901' => 'vma', 'VMungo0251G0490' => 'vmu', 'VMungo0251G1748' => 'vmu', 'VMungo1309G0421' => 'vmu', 'Zm00001eb086500' => 'zma', 'Zm00001eb150680' => 'zma', 'Zm00001eb162330' => 'zma', 'Zm00001eb203130' => 'zma', 'Zm00001eb369480' => 'zma', 'Zm00001eb382340' => 'zma', 'Zm00001eb416360' => 'zma' ), 'gf_id' => 'HOM05D000902', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000902' ), 'data_identifier' => 'HOM05D000902', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000902', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '663', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02470' => 'bna', 'A01p16260' => 'bna', 'A02p01680' => 'bna', 'A03p16600' => 'bna', 'A03p55660' => 'bna', 'A03p64160' => 'bna', 'A03p64170' => 'bna', 'A08p31900' => 'bna', 'A09p59530' => 'bna', 'A10p08230' => 'bna', 'A10p25090' => 'bna', 'Aa31LG3G7100' => 'aar', 'Aa31LG3G7110' => 'aar', 'Aa31LG6G13160' => 'aar', 'Aa31LG7G10770' => 'aar', 'Aa31LG7G3830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2723' => 'aag', 'Actinidia08045' => 'ach', 'Actinidia08888' => 'ach', 'Actinidia18333' => 'ach', 'Actinidia19334' => 'ach', 'Actinidia25552' => 'ach', 'Actinidia26089' => 'ach', 'Actinidia30615' => 'ach', 'Actinidia30616' => 'ach', 'Actinidia33083' => 'ach', 'Actinidia35762' => 'ach', 'Ah.02g110620' => 'amhyb', 'Ah.11g046390' => 'amhyb', 'AL1G31670' => 'aly', 'AL6G23730' => 'aly', 'AL7G14740' => 'aly', 'AL7G14750' => 'aly', 'AL7G14760' => 'aly', 'AL7G28220' => 'aly', 'AL8G24940' => 'aly', 'Aqoxy3G01665' => 'aox', 'Aqoxy3G02853' => 'aox', 'Aqoxy5G01513' => 'aox', 'Aqoxy5G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8SKA4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ75LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKDA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0LJZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7REX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZP4YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWX7I5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2QKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS0L9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPCD8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q161UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC7XCF' => 'arhy', 'AT1G19100' => 'ath', 'AT4G24970' => 'ath', 'AT4G36270' => 'ath', 'AT4G36280' => 'ath', 'AT4G36290' => 'ath', 'AT5G13130' => 'ath', 'AT5G50780' => 'ath', 'ATR0582G266' => 'atr', 'ATR0661G195' => 'atr', 'ATR1152G031' => 'atr', 'Atru.chr11.2382' => 'acertr', 'Atru.chr12.2337' => 'acertr', 'Atru.chr3.744' => 'acertr', 'Atru.chr6.1870' => 'acertr', 'Atru.chr9.2515' => 'acertr', 'AUR62004120' => 'cqu', 'AUR62005667' => 'cqu', 'AUR62007634' => 'cqu', 'AUR62008186' => 'cqu', 'AUR62008187' => 'cqu', 'AUR62008188' => 'cqu', 'AUR62027954' => 'cqu', 'AUR62028766' => 'cqu', 'AUR62028767' => 'cqu', 'AUR62028768' => 'cqu', 'AUR62028886' => 'cqu', 'AUR62029563' => 'cqu', 'AUR62038832' => 'cqu', 'BcaB01g04149' => 'bca', 'BcaB03g12940' => 'bca', 'BcaB03g13090' => 'bca', 'BcaB03g14466' => 'bca', 'BcaB05g24035' => 'bca', 'BcaC01g06050' => 'bca', 'BcaC04g19148' => 'bca', 'BcaC04g20761' => 'bca', 'BcaC06g32845' => 'bca', 'BcaC07g41274' => 'bca', 'BcaC09g50827' => 'bca', 'BcaNung00741' => 'bca', 'BcaNung00742' => 'bca', 'BcaNung01859' => 'bca', 'BcaNung03985' => 'bca', 'BcaNung03989' => 'bca', 'BcaNung05661' => 'bca', 'BolC1t00257H' => 'bol', 'BolC1t01956H' => 'bol', 'BolC2t06534H' => 'bol', 'BolC3t14334H' => 'bol', 'BolC5t30451H' => 'bol', 'BolC7t45880H' => 'bol', 'BolC7t46586H' => 'bol', 'BolC8t49301H' => 'bol', 'BolC8t51837H' => 'bol', 'BolC9t56822H' => 'bol', 'BolC9t59235H' => 'bol', 'BraA01t00234Z' => 'bra', 'BraA01t01563Z' => 'bra', 'BraA02t05147Z' => 'bra', 'BraA03t10947Z' => 'bra', 'BraA03t14633Z' => 'bra', 'BraA08t35112Z' => 'bra', 'BraA09t41330Z' => 'bra', 'BraA10t44570Z' => 'bra', 'C01p02670' => 'bna', 'C01p20260' => 'bna', 'C02p05890' => 'bna', 'C03p19530' => 'bna', 'C05p17470' => 'bna', 'C07p53900' => 'bna', 'C07p61630' => 'bna', 'C08p16800' => 'bna', 'C08p42810' => 'bna', 'C09p39480' => 'bna', 'C09p63980' => 'bna', 'CAN.G1001.7' => 'can', 'CAN.G1034.55' => 'can', 'CAN.G143.7' => 'can', 'CAN.G3340.1' => 'can', 'CAN.G358.19' => 'can', 'CAN.G373.2' => 'can', 'CAN.G674.16' => 'can', 'CAN.G674.17' => 'can', 'CAN.G674.18' => 'can', 'CAN.G732.2' => 'can', 'CAN.G732.3' => 'can', 'CAN.G993.39' => 'can', 'CANSAT01G2052' => 'cansat', 'CANSAT80G0070' => 'cansat', 'CANSAT80G0483' => 'cansat', 'CANSAT80G0625' => 'cansat', 'CARHR019690' => 'chi', 'CARHR080280' => 'chi', 'CARHR152750' => 'chi', 'CARHR152760' => 'chi', 'CARHR152770' => 'chi', 'CARHR200340' => 'chi', 'CARHR232370' => 'chi', 'CARHR244670' => 'chi', 'CARHR244680' => 'chi', 'CARHR257520' => 'chi', 'Carub.0001s1872' => 'cru', 'Carub.0006s1130' => 'cru', 'Carub.0007s0396' => 'cru', 'Carub.0007s0397' => 'cru', 'Carub.0007s1608' => 'cru', 'Carub.0008s1068' => 'cru', 'Carub.0008s1077' => 'cru', 'Ca_16158_v3' => 'car', 'Ca_17571_v3' => 'car', 'Ca_21936_v3' => 'car', 'Ca_22350_v3' => 'car', 'CBR_g22445' => 'cbr', 'CBR_g26290' => 'cbr', 'Cc04_g09610' => 'ccan', 'Cc04_g12280' => 'ccan', 'Cc07_g10230' => 'ccan', 'CDE02G0093' => 'cde', 'CDE02G0701' => 'cde', 'CDE04G1050' => 'cde', 'CDE05G1833' => 'cde', 'CDE05G3058' => 'cde', 'CDE05G3380' => 'cde', 'CDE06G0536' => 'cde', 'Cfa006923' => 'cfa', 'Cfa009402' => 'cfa', 'Cfa018751' => 'cfa', 'Cfa019164' => 'cfa', 'Cfa022935' => 'cfa', 'Ciclev10019081m.g' => 'ccl', 'Ciclev10025076m.g' => 'ccl', 'Ciclev10030712m.g' => 'ccl', 'Ciclev10033760m.g' => 'ccl', 'CiPaw.05G105600' => 'cil', 'CiPaw.08G136700' => 'cil', 'CiPaw.11G003900' => 'cil', 'CiPaw.11G023700' => 'cil', 'CiPaw.12G003700' => 'cil', 'ClCG06G017100' => 'cla', 'ClCG06G018110' => 'cla', 'ClCG07G008800' => 'cla', 'ClCG07G015330' => 'cla', 'COL.COLO4_13698' => 'col', 'COL.COLO4_16659' => 'col', 'COL.COLO4_21986' => 'col', 'COL.COLO4_24049' => 'col', 'COL.COLO4_29061' => 'col', 'COL.COLO4_29075' => 'col', 'COL.COLO4_30094' => 'col', 'Cpa.g.c33689' => 'cpa', 'Cpa.g.sc108.39' => 'cpa', 'Cpa.g.sc108.41' => 'cpa', 'Cpa.g.sc1163.1' => 'cpa', 'Cpa.g.sc4.155' => 'cpa', 'Cpa.g.sc6.194' => 'cpa', 'CsaV3_1G000340' => 'csa', 'CsaV3_1G001400' => 'csa', 'CsaV3_4G002220' => 'csa', 'CsaV3_4G005370' => 'csa', 'CSS0007487' => 'camsi', 'CSS0008066' => 'camsi', 'CSS0009120' => 'camsi', 'CSS0015512' => 'camsi', 'CSS0022409' => 'camsi', 'CSS0025358' => 'camsi', 'CSS0044547' => 'camsi', 'DCAR_013057' => 'dca', 'DCAR_015058' => 'dca', 'DCAR_016027' => 'dca', 'DCAR_017327' => 'dca', 'DCAR_020743' => 'dca', 'DCAR_026157' => 'dca', 'DCAR_032339' => 'dca', 'DCAR_032340' => 'dca', 'Dinv11200' => 'din', 'Dinv11201' => 'din', 'Dinv20631' => 'din', 'Dinv23182' => 'din', 'Dinv33466' => 'din', 'Dinv33583' => 'din', 'Dinv38565' => 'din', 'Duzib068G0200' => 'dzi', 'Duzib147G0132' => 'dzi', 'Duzib147G0635' => 'dzi', 'Duzib205G1670' => 'dzi', 'Duzib251G0606' => 'dzi', 'ECA232G3336' => 'eca', 'ECA232G3763' => 'eca', 'ECA232G4845' => 'eca', 'ECA234G1607' => 'eca', 'ECA246G0932' => 'eca', 'ECA247G0781' => 'eca', 'ECA247G1932' => 'eca', 'ECA247G2079' => 'eca', 'ECA247G3338' => 'eca', 'ECA247G4115' => 'eca', 'EL10Ac3g06552' => 'bvu', 'EL10Ac5g10721' => 'bvu', 'EL10Ac5g10722' => 'bvu', 'EL10Ac5g10723' => 'bvu', 'EL10Ac5g11361' => 'bvu', 'EL10Ac6g13553' => 'bvu', 'EL10As8g23872' => 'bvu', 'Eucgr.B00250' => 'egr', 'Eucgr.B00251' => 'egr', 'Eucgr.B03533' => 'egr', 'Eucgr.I02381' => 'egr', 'Eucgr.K02700' => 'egr', 'FAN02G0174' => 'fan', 'FAN02G3146' => 'fan', 'FAN04G1672' => 'fan', 'FAN04G2273' => 'fan', 'FAN05G2791' => 'fan', 'FAN05G4035' => 'fan', 'FAN07G0834' => 'fan', 'FAN08G1198' => 'fan', 'FAN09G4182' => 'fan', 'FAN12G0496' => 'fan', 'FAN13G1027' => 'fan', 'FAN13G2951' => 'fan', 'FAN14G0705' => 'fan', 'FAN14G0720' => 'fan', 'FAN17G0201' => 'fan', 'FAN17G2665' => 'fan', 'FAN18G1456' => 'fan', 'FAN18G1525' => 'fan', 'FAN18G3500' => 'fan', 'FAN28G2670' => 'fan', 'FvH4_1g12391' => 'fve', 'FvH4_4g23220' => 'fve', 'FvH4_5g08810' => 'fve', 'FvH4_5g28960' => 'fve', 'FvH4_6g42820' => 'fve', 'FvH4_6g51110' => 'fve', 'Glyma.02G051802' => 'gma', 'Glyma.04G185300' => 'gma', 'Glyma.05G202900' => 'gma', 'Glyma.08G010300' => 'gma', 'Glyma.16G131900' => 'gma', 'Glyma.17G087900' => 'gma', 'Gohir.A07G048600' => 'ghi', 'Gohir.A11G179000' => 'ghi', 'Gohir.A12G140900' => 'ghi', 'Gohir.A12G140950' => 'ghi', 'Gohir.A12G191700' => 'ghi', 'Gohir.A13G086300' => 'ghi', 'Gohir.D07G052900' => 'ghi', 'Gohir.D11G186600' => 'ghi', 'Gohir.D12G145575' => 'ghi', 'Gohir.D12G145650' => 'ghi', 'Gohir.D12G145725' => 'ghi', 'Gohir.D12G194050' => 'ghi', 'Gohir.D13G091800' => 'ghi', 'Gorai.001G055900' => 'gra', 'Gorai.007G198400' => 'gra', 'Gorai.008G157000' => 'gra', 'Gorai.008G157100' => 'gra', 'Gorai.008G208700' => 'gra', 'Gorai.010G138700' => 'gra', 'GSVIVG01000977001' => 'vvi', 'GSVIVG01007708001' => 'vvi', 'GSVIVG01008587001' => 'vvi', 'GSVIVG01018849001' => 'vvi', 'GSVIVG01032432001' => 'vvi', 'HanXRQChr02g0034131' => 'han', 'HanXRQChr02g0035981' => 'han', 'HanXRQChr02g0035991' => 'han', 'HanXRQChr05g0155611' => 'han', 'HanXRQChr05g0155621' => 'han', 'HanXRQChr08g0236501' => 'han', 'HanXRQChr09g0261321' => 'han', 'HanXRQChr09g0272081' => 'han', 'HanXRQChr10g0310741' => 'han', 'HanXRQChr11g0325591' => 'han', 'HanXRQChr12g0385691' => 'han', 'HanXRQChr13g0387801' => 'han', 'HanXRQChr15g0463011' => 'han', 'Haze_03826' => 'cav', 'Haze_03827' => 'cav', 'Haze_07183' => 'cav', 'Haze_07537' => 'cav', 'Haze_07539' => 'cav', 'Haze_12461' => 'cav', 'Haze_16115' => 'cav', 'Haze_16808' => 'cav', 'Haze_18531' => 'cav', 'Hma1.2p1_0046F.1_g026700' => 'hma', 'Hma1.2p1_0046F.1_g026710' => 'hma', 'Hma1.2p1_0168F.1_g074340' => 'hma', 'Hma1.2p1_0266F.1_g107030' => 'hma', 'Hma1.2p1_0266F.1_g107060' => 'hma', 'Hma1.2p1_0275F.1_g110510' => 'hma', 'Hma1.2p1_0592F.1_g185490' => 'hma', 'Hma1.2p1_0592F.1_g185500' => 'hma', 'Hma1.2p1_0592F.1_g185510' => 'hma', 'Hma1.2p1_0592F.1_g185520' => 'hma', 'Hma1.2p1_0592F.1_g185530' => 'hma', 'Hma1.2p1_0818F.1_g223450' => 'hma', 'HPP92_009708' => 'vpl', 'HPP92_009793' => 'vpl', 'HPP92_009796' => 'vpl', 'HPP92_009797' => 'vpl', 'HPP92_014940' => 'vpl', 'HPP92_014988' => 'vpl', 'Hund02463' => 'sun', 'Hund02760' => 'sun', 'Hund05071' => 'sun', 'Hund10108' => 'sun', 'Hund11204' => 'sun', 'Hund14016' => 'sun', 'Hund16464' => 'sun', 'Lalb_Chr09g0333391' => 'lal', 'Lalb_Chr11g0070461' => 'lal', 'Lalb_Chr12g0201671' => 'lal', 'Lalb_Chr13g0297161' => 'lal', 'Lj1g0002823' => 'lja', 'Lj3C1074T6' => 'lonja', 'Lj4A212T28' => 'lonja', 'Lj4g0005516' => 'lja', 'Lj4g0013705' => 'lja', 'Lj4g0027865' => 'lja', 'Lj5C92G16' => 'lonja', 'Lj5C92T12' => 'lonja', 'Lj7C596T3' => 'lonja', 'Lj9A446G59' => 'lonja', 'Lj9A482G21' => 'lonja', 'Lsat_1_v5_gn_1_28261' => 'lsa', 'Lsat_1_v5_gn_1_28281' => 'lsa', 'Lsat_1_v5_gn_1_32721' => 'lsa', 'Lsat_1_v5_gn_4_151760' => 'lsa', 'Lsat_1_v5_gn_4_2120' => 'lsa', 'Lsat_1_v5_gn_4_75761' => 'lsa', 'Lsat_1_v5_gn_5_10920' => 'lsa', 'Manes.02G099900' => 'mes', 'Manes.11G096200' => 'mes', 'Manes.12G007200' => 'mes', 'Manes.14G048300' => 'mes', 'Manes.17G114700' => 'mes', 'Mapoly0002s0070' => 'mpo', 'Mapoly0029s0099' => 'mpo', 'MBI07_g24742_MAGBIO' => 'mbi', 'MBI10_g27988_MAGBIO' => 'mbi', 'MBI11_g13057_MAGBIO' => 'mbi', 'MD02G1137200' => 'mdo', 'MD06G1137200' => 'mdo', 'MD07G1122300' => 'mdo', 'MD09G1078200' => 'mdo', 'MD13G1123700' => 'mdo', 'MD14G1151900' => 'mdo', 'MD17G1030900' => 'mdo', 'MD17G1068200' => 'mdo', 'MD17G1068600' => 'mdo', 'Medtr3g077540' => 'mtr', 'Medtr4g105530' => 'mtr', 'Medtr8g076580' => 'mtr', 'Medtr8g076590' => 'mtr', 'Medtr8g096410' => 'mtr', 'MELO3C016411.2' => 'cme', 'MELO3C017780.2' => 'cme', 'MELO3C022560.2' => 'cme', 'MELO3C026187.2' => 'cme', 'MELO3C026286.2' => 'cme', 'MELO3C032854.2' => 'cme', 'Migut.H02495' => 'egut', 'Migut.I00561' => 'egut', 'Migut.K01015' => 'egut', 'Migut.K01016' => 'egut', 'Migut.L00743' => 'egut', 'Migut.L00744' => 'egut', 'Migut.L00746' => 'egut', 'Migut.L00798' => 'egut', 'Migut.L00799' => 'egut', 'Migut.N02096' => 'egut', 'MSTRG.11259' => 'ama', 'MSTRG.23142' => 'ama', 'MSTRG.2499' => 'ama', 'Nitab4.5_0000003g0730' => 'nta', 'Nitab4.5_0000137g0020' => 'nta', 'Nitab4.5_0000721g0210' => 'nta', 'Nitab4.5_0000723g0050' => 'nta', 'Nitab4.5_0000913g0070' => 'nta', 'Nitab4.5_0001332g0040' => 'nta', 'Nitab4.5_0001771g0050' => 'nta', 'Nitab4.5_0001918g0050' => 'nta', 'Nitab4.5_0002686g0030' => 'nta', 'Nitab4.5_0003156g0020' => 'nta', 'Nitab4.5_0003383g0040' => 'nta', 'Nitab4.5_0003918g0010' => 'nta', 'Nitab4.5_0006760g0010' => 'nta', 'Nn1g05981' => 'nnu', 'Nn1g06288' => 'nnu', 'Nn3g16371' => 'nnu', 'Nn3g16786' => 'nnu', 'Nn4g22232' => 'nnu', 'Oeu005144.1' => 'oeu', 'Oeu005145.1' => 'oeu', 'Oeu011348.1' => 'oeu', 'Oeu016415.1' => 'oeu', 'Oeu023501.1' => 'oeu', 'Oeu044473.1' => 'oeu', 'Oeu048892.2' => 'oeu', 'Os01g0549200' => 'osa', 'Os02g0469300' => 'osa', 'Os04g0311100' => 'osa', 'Os06g0474900' => 'osa', 'Os10g0181700' => 'osa', 'Os11g0454800' => 'osa', 'Peaxi162Scf00037g00714' => 'pax', 'Peaxi162Scf00084g01217' => 'pax', 'Peaxi162Scf00257g00217' => 'pax', 'Peaxi162Scf00516g00215' => 'pax', 'Peaxi162Scf00689g00123' => 'pax', 'PGR044G2719' => 'pgr', 'PGR083G1360' => 'pgr', 'PGR102G2849' => 'pgr', 'PGR119G2534' => 'pgr', 'PGSC0003DMG400003538' => 'stu', 'PGSC0003DMG400028138' => 'stu', 'PGSC0003DMG400031732' => 'stu', 'PGSC0003DMG400038165' => 'stu', 'Phvul.002G284600' => 'pvu', 'Phvul.003G258200' => 'pvu', 'Phvul.009G176500' => 'pvu', 'Potri.003G167201' => 'ptr', 'Potri.005G118400' => 'ptr', 'Potri.012G089000' => 'ptr', 'Potri.012G102800' => 'ptr', 'Potri.015G079400' => 'ptr', 'Potri.015G100900' => 'ptr', 'Pp3c14_9810' => 'ppa', 'Pp3c15_10450' => 'ppa', 'Pp3c20_19150' => 'ppa', 'Pp3c23_12740' => 'ppa', 'Pp3c23_6310' => 'ppa', 'Pp3c24_3720' => 'ppa', 'Pp3c27_2580' => 'ppa', 'Pp3c9_8990' => 'ppa', 'PRCOL_00002854' => 'pco', 'Prupe.1G221200' => 'ppe', 'Prupe.3G289000' => 'ppe', 'Prupe.5G147000' => 'ppe', 'Prupe.6G157300' => 'ppe', 'Prupe.7G163400' => 'ppe', 'Psat0s2177g0040' => 'psa', 'Psat3g174760' => 'psa', 'Psat3g192160' => 'psa', 'Psat4g058520' => 'psa', 'Psat4g096840' => 'psa', 'Psat7g037320' => 'psa', 'PSO017G1274' => 'pso', 'PSO017G5166' => 'pso', 'PSO063G4558' => 'pso', 'PSO170G4458' => 'pso', 'PSO170G5005' => 'pso', 'PSO210G6156' => 'pso', 'PSO210G6635' => 'pso', 'PSO210G7397' => 'pso', 'PSO210G7700' => 'pso', 'PSO455G0035' => 'pso', 'PSO455G0180' => 'pso', 'PSO478G4515' => 'pso', 'PSO832G1305' => 'pso', 'PSO832G3489' => 'pso', 'QL02p075247' => 'qlo', 'QL03p051148' => 'qlo', 'QL05p010313' => 'qlo', 'QL06p034627' => 'qlo', 'QL10p001889' => 'qlo', 'QL10p010846' => 'qlo', 'RcHm_v2.0_Chr1g0350621' => 'rch', 'RcHm_v2.0_Chr1g0350641' => 'rch', 'RcHm_v2.0_Chr2g0092891' => 'rch', 'RcHm_v2.0_Chr2g0100251' => 'rch', 'RcHm_v2.0_Chr2g0158661' => 'rch', 'RcHm_v2.0_Chr2g0172741' => 'rch', 'RcHm_v2.0_Chr4g0429571' => 'rch', 'RcHm_v2.0_Chr5g0042471' => 'rch', 'RcHm_v2.0_Chr7g0189451' => 'rch', 'Rhsim08G0052000' => 'rsi', 'Rhsim08G0174400' => 'rsi', 'Rhsim08G0193200' => 'rsi', 'Rhsim10G0214800' => 'rsi', 'Rhsim10G0214900' => 'rsi', 'Rhsim10G0215000' => 'rsi', 'Rhsim12G0022900' => 'rsi', 'Rhsim12G0177500' => 'rsi', 'Rhsim12G0177700' => 'rsi', 'Sabra03G0122600' => 'sbr', 'Sabra05G0097400' => 'sbr', 'Sabra12G0064100' => 'sbr', 'Sabra15G0121300' => 'sbr', 'SalBow2G0642' => 'sbo', 'SalBow5G2667' => 'sbo', 'SalBow5G4873' => 'sbo', 'SalBow8G2395' => 'sbo', 'Sc03g0003290' => 'sci', 'Sc10g0010130' => 'sci', 'Sc22g0003650' => 'sci', 'Sed0001603' => 'sed', 'Sed0004259' => 'sed', 'Sed0006789' => 'sed', 'Sed0011838' => 'sed', 'Sed0012964' => 'sed', 'Sed0016383' => 'sed', 'Sed0019010' => 'sed', 'Sed0020188' => 'sed', 'SEGI_04702' => 'sgi', 'SEGI_17231' => 'sgi', 'SEGI_18877' => 'sgi', 'SEGI_25196' => 'sgi', 'SEGI_25515' => 'sgi', 'SEGI_28445' => 'sgi', 'SEGI_37452' => 'sgi', 'SGA_v2.0_scaffold188G40336' => 'sas', 'SGA_v2.0_scaffold228G43247' => 'sas', 'SGA_v2.0_scaffold280G46853' => 'sas', 'SGA_v2.0_scaffold34G13808' => 'sas', 'SGA_v2.0_scaffold40G15576' => 'sas', 'SGA_v2.0_scaffold611G53188' => 'sas', 'SGA_v2.0_scaffold78G25461' => 'sas', 'SGA_v2.0_scaffold90G27888' => 'sas', 'SHI08601' => 'shi', 'SHI08606' => 'shi', 'SHI17117' => 'shi', 'SHI17119' => 'shi', 'SMO118G0201' => 'smo', 'SMO169G0247' => 'smo', 'SMO176G0006' => 'smo', 'SMO176G0015' => 'smo', 'SMO202G0006' => 'smo', 'SMO240G0050' => 'smo', 'SMO286G0009' => 'smo', 'SMO338G0033' => 'smo', 'SMO356G0533' => 'smo', 'SMO364G0382' => 'smo', 'SMO367G0166' => 'smo', 'SMO367G1098' => 'smo', 'Solyc01g009920.3' => 'sly', 'Solyc01g099300.3' => 'sly', 'Solyc02g084700.3' => 'sly', 'Solyc03g097520.3' => 'sly', 'Solyc06g071580.3' => 'sly', 'Solyc10g081760.3' => 'sly', 'Sopen01g005480' => 'spe', 'Sopen01g042850' => 'spe', 'Sopen02g029370' => 'spe', 'Sopen03g028280' => 'spe', 'Sopen06g027870' => 'spe', 'Sopen10g032270' => 'spe', 'Sp5g18180' => 'spa', 'Sp6g12880' => 'spa', 'Sp6g30850' => 'spa', 'Sp7g22960' => 'spa', 'Sp7g34010' => 'spa', 'SpUn1326_0010' => 'spa', 'TAR371G0242' => 'tar', 'TAR622G0638' => 'tar', 'TAR628G1548' => 'tar', 'TAR629G1079' => 'tar', 'TAR629G3413' => 'tar', 'THA.LOC104804249' => 'tha', 'THA.LOC104808315' => 'tha', 'THA.LOC104809238' => 'tha', 'THA.LOC104825484' => 'tha', 'Thecc.01G025500' => 'tca', 'Thecc.03G015800' => 'tca', 'Thecc.03G018000' => 'tca', 'Thecc.03G134800' => 'tca', 'Thecc.04G014700' => 'tca', 'Thhalv10006991m.g' => 'esa', 'Thhalv10012707m.g' => 'esa', 'Thhalv10015739m.g' => 'esa', 'Thhalv10024553m.g' => 'esa', 'Thhalv10024673m.g' => 'esa', 'Thhalv10029187m.g' => 'esa', 'TPR.G12971' => 'tpr', 'TPR.G29396' => 'tpr', 'TPR.G33376' => 'tpr', 'TPR.G35508' => 'tpr', 'TPR.G35516' => 'tpr', 'TPR.G37317' => 'tpr', 'TPR.G37389' => 'tpr', 'TPR.G37523' => 'tpr', 'TPR.G559' => 'tpr', 'TWI14G0070' => 'twi', 'TWI14G0729' => 'twi', 'TWI18G0596' => 'twi', 'TWI39G0780' => 'twi', 'TWI39G0850' => 'twi', 'TWI73G1052' => 'twi', 'unitig_52.g17485' => 'ugi', 'unitig_61.g26355' => 'ugi', 'vmacro01040' => 'vma', 'vmacro16731' => 'vma', 'vmacro18270' => 'vma', 'vmacro19142' => 'vma', 'vmacro19407' => 'vma', 'vmacro19408' => 'vma', 'vmacro21899' => 'vma', 'vmacro21900' => 'vma', 'vmacro21901' => 'vma', 'VMungo0251G0490' => 'vmu', 'VMungo0251G1748' => 'vmu', 'VMungo1309G0421' => 'vmu', 'Zm00001eb086500' => 'zma', 'Zm00001eb150680' => 'zma', 'Zm00001eb162330' => 'zma', 'Zm00001eb203130' => 'zma', 'Zm00001eb369480' => 'zma', 'Zm00001eb382340' => 'zma', 'Zm00001eb416360' => 'zma' ) $gf_id = 'HOM05D000902' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000902' ) $data_identifier = 'HOM05D000902' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 13, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 10, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 6, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 9, 'hma' => (int) 12, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 4, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 6, 'ppa' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 6, 'rch' => (int) 9, 'rsi' => (int) 9, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 12, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 3, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416360' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000902', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '663', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02470' => 'bna', 'A01p16260' => 'bna', 'A02p01680' => 'bna', 'A03p16600' => 'bna', 'A03p55660' => 'bna', 'A03p64160' => 'bna', 'A03p64170' => 'bna', 'A08p31900' => 'bna', 'A09p59530' => 'bna', 'A10p08230' => 'bna', 'A10p25090' => 'bna', 'Aa31LG3G7100' => 'aar', 'Aa31LG3G7110' => 'aar', 'Aa31LG6G13160' => 'aar', 'Aa31LG7G10770' => 'aar', 'Aa31LG7G3830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2723' => 'aag', 'Actinidia08045' => 'ach', 'Actinidia08888' => 'ach', 'Actinidia18333' => 'ach', 'Actinidia19334' => 'ach', 'Actinidia25552' => 'ach', 'Actinidia26089' => 'ach', 'Actinidia30615' => 'ach', 'Actinidia30616' => 'ach', 'Actinidia33083' => 'ach', 'Actinidia35762' => 'ach', 'Ah.02g110620' => 'amhyb', 'Ah.11g046390' => 'amhyb', 'AL1G31670' => 'aly', 'AL6G23730' => 'aly', 'AL7G14740' => 'aly', 'AL7G14750' => 'aly', 'AL7G14760' => 'aly', 'AL7G28220' => 'aly', 'AL8G24940' => 'aly', 'Aqoxy3G01665' => 'aox', 'Aqoxy3G02853' => 'aox', 'Aqoxy5G01513' => 'aox', 'Aqoxy5G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8SKA4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ75LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKDA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0LJZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7REX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZP4YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWX7I5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2QKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS0L9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPCD8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q161UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC7XCF' => 'arhy', 'AT1G19100' => 'ath', 'AT4G24970' => 'ath', 'AT4G36270' => 'ath', 'AT4G36280' => 'ath', 'AT4G36290' => 'ath', 'AT5G13130' => 'ath', 'AT5G50780' => 'ath', 'ATR0582G266' => 'atr', 'ATR0661G195' => 'atr', 'ATR1152G031' => 'atr', 'Atru.chr11.2382' => 'acertr', 'Atru.chr12.2337' => 'acertr', 'Atru.chr3.744' => 'acertr', 'Atru.chr6.1870' => 'acertr', 'Atru.chr9.2515' => 'acertr', 'AUR62004120' => 'cqu', 'AUR62005667' => 'cqu', 'AUR62007634' => 'cqu', 'AUR62008186' => 'cqu', 'AUR62008187' => 'cqu', 'AUR62008188' => 'cqu', 'AUR62027954' => 'cqu', 'AUR62028766' => 'cqu', 'AUR62028767' => 'cqu', 'AUR62028768' => 'cqu', 'AUR62028886' => 'cqu', 'AUR62029563' => 'cqu', 'AUR62038832' => 'cqu', 'BcaB01g04149' => 'bca', 'BcaB03g12940' => 'bca', 'BcaB03g13090' => 'bca', 'BcaB03g14466' => 'bca', 'BcaB05g24035' => 'bca', 'BcaC01g06050' => 'bca', 'BcaC04g19148' => 'bca', 'BcaC04g20761' => 'bca', 'BcaC06g32845' => 'bca', 'BcaC07g41274' => 'bca', 'BcaC09g50827' => 'bca', 'BcaNung00741' => 'bca', 'BcaNung00742' => 'bca', 'BcaNung01859' => 'bca', 'BcaNung03985' => 'bca', 'BcaNung03989' => 'bca', 'BcaNung05661' => 'bca', 'BolC1t00257H' => 'bol', 'BolC1t01956H' => 'bol', 'BolC2t06534H' => 'bol', 'BolC3t14334H' => 'bol', 'BolC5t30451H' => 'bol', 'BolC7t45880H' => 'bol', 'BolC7t46586H' => 'bol', 'BolC8t49301H' => 'bol', 'BolC8t51837H' => 'bol', 'BolC9t56822H' => 'bol', 'BolC9t59235H' => 'bol', 'BraA01t00234Z' => 'bra', 'BraA01t01563Z' => 'bra', 'BraA02t05147Z' => 'bra', 'BraA03t10947Z' => 'bra', 'BraA03t14633Z' => 'bra', 'BraA08t35112Z' => 'bra', 'BraA09t41330Z' => 'bra', 'BraA10t44570Z' => 'bra', 'C01p02670' => 'bna', 'C01p20260' => 'bna', 'C02p05890' => 'bna', 'C03p19530' => 'bna', 'C05p17470' => 'bna', 'C07p53900' => 'bna', 'C07p61630' => 'bna', 'C08p16800' => 'bna', 'C08p42810' => 'bna', 'C09p39480' => 'bna', 'C09p63980' => 'bna', 'CAN.G1001.7' => 'can', 'CAN.G1034.55' => 'can', 'CAN.G143.7' => 'can', 'CAN.G3340.1' => 'can', 'CAN.G358.19' => 'can', 'CAN.G373.2' => 'can', 'CAN.G674.16' => 'can', 'CAN.G674.17' => 'can', 'CAN.G674.18' => 'can', 'CAN.G732.2' => 'can', 'CAN.G732.3' => 'can', 'CAN.G993.39' => 'can', 'CANSAT01G2052' => 'cansat', 'CANSAT80G0070' => 'cansat', 'CANSAT80G0483' => 'cansat', 'CANSAT80G0625' => 'cansat', 'CARHR019690' => 'chi', 'CARHR080280' => 'chi', 'CARHR152750' => 'chi', 'CARHR152760' => 'chi', 'CARHR152770' => 'chi', 'CARHR200340' => 'chi', 'CARHR232370' => 'chi', 'CARHR244670' => 'chi', 'CARHR244680' => 'chi', 'CARHR257520' => 'chi', 'Carub.0001s1872' => 'cru', 'Carub.0006s1130' => 'cru', 'Carub.0007s0396' => 'cru', 'Carub.0007s0397' => 'cru', 'Carub.0007s1608' => 'cru', 'Carub.0008s1068' => 'cru', 'Carub.0008s1077' => 'cru', 'Ca_16158_v3' => 'car', 'Ca_17571_v3' => 'car', 'Ca_21936_v3' => 'car', 'Ca_22350_v3' => 'car', 'CBR_g22445' => 'cbr', 'CBR_g26290' => 'cbr', 'Cc04_g09610' => 'ccan', 'Cc04_g12280' => 'ccan', 'Cc07_g10230' => 'ccan', 'CDE02G0093' => 'cde', 'CDE02G0701' => 'cde', 'CDE04G1050' => 'cde', 'CDE05G1833' => 'cde', 'CDE05G3058' => 'cde', 'CDE05G3380' => 'cde', 'CDE06G0536' => 'cde', 'Cfa006923' => 'cfa', 'Cfa009402' => 'cfa', 'Cfa018751' => 'cfa', 'Cfa019164' => 'cfa', 'Cfa022935' => 'cfa', 'Ciclev10019081m.g' => 'ccl', 'Ciclev10025076m.g' => 'ccl', 'Ciclev10030712m.g' => 'ccl', 'Ciclev10033760m.g' => 'ccl', 'CiPaw.05G105600' => 'cil', 'CiPaw.08G136700' => 'cil', 'CiPaw.11G003900' => 'cil', 'CiPaw.11G023700' => 'cil', 'CiPaw.12G003700' => 'cil', 'ClCG06G017100' => 'cla', 'ClCG06G018110' => 'cla', 'ClCG07G008800' => 'cla', 'ClCG07G015330' => 'cla', 'COL.COLO4_13698' => 'col', 'COL.COLO4_16659' => 'col', 'COL.COLO4_21986' => 'col', 'COL.COLO4_24049' => 'col', 'COL.COLO4_29061' => 'col', 'COL.COLO4_29075' => 'col', 'COL.COLO4_30094' => 'col', 'Cpa.g.c33689' => 'cpa', 'Cpa.g.sc108.39' => 'cpa', 'Cpa.g.sc108.41' => 'cpa', 'Cpa.g.sc1163.1' => 'cpa', 'Cpa.g.sc4.155' => 'cpa', 'Cpa.g.sc6.194' => 'cpa', 'CsaV3_1G000340' => 'csa', 'CsaV3_1G001400' => 'csa', 'CsaV3_4G002220' => 'csa', 'CsaV3_4G005370' => 'csa', 'CSS0007487' => 'camsi', 'CSS0008066' => 'camsi', 'CSS0009120' => 'camsi', 'CSS0015512' => 'camsi', 'CSS0022409' => 'camsi', 'CSS0025358' => 'camsi', 'CSS0044547' => 'camsi', 'DCAR_013057' => 'dca', 'DCAR_015058' => 'dca', 'DCAR_016027' => 'dca', 'DCAR_017327' => 'dca', 'DCAR_020743' => 'dca', 'DCAR_026157' => 'dca', 'DCAR_032339' => 'dca', 'DCAR_032340' => 'dca', 'Dinv11200' => 'din', 'Dinv11201' => 'din', 'Dinv20631' => 'din', 'Dinv23182' => 'din', 'Dinv33466' => 'din', 'Dinv33583' => 'din', 'Dinv38565' => 'din', 'Duzib068G0200' => 'dzi', 'Duzib147G0132' => 'dzi', 'Duzib147G0635' => 'dzi', 'Duzib205G1670' => 'dzi', 'Duzib251G0606' => 'dzi', 'ECA232G3336' => 'eca', 'ECA232G3763' => 'eca', 'ECA232G4845' => 'eca', 'ECA234G1607' => 'eca', 'ECA246G0932' => 'eca', 'ECA247G0781' => 'eca', 'ECA247G1932' => 'eca', 'ECA247G2079' => 'eca', 'ECA247G3338' => 'eca', 'ECA247G4115' => 'eca', 'EL10Ac3g06552' => 'bvu', 'EL10Ac5g10721' => 'bvu', 'EL10Ac5g10722' => 'bvu', 'EL10Ac5g10723' => 'bvu', 'EL10Ac5g11361' => 'bvu', 'EL10Ac6g13553' => 'bvu', 'EL10As8g23872' => 'bvu', 'Eucgr.B00250' => 'egr', 'Eucgr.B00251' => 'egr', 'Eucgr.B03533' => 'egr', 'Eucgr.I02381' => 'egr', 'Eucgr.K02700' => 'egr', 'FAN02G0174' => 'fan', 'FAN02G3146' => 'fan', 'FAN04G1672' => 'fan', 'FAN04G2273' => 'fan', 'FAN05G2791' => 'fan', 'FAN05G4035' => 'fan', 'FAN07G0834' => 'fan', 'FAN08G1198' => 'fan', 'FAN09G4182' => 'fan', 'FAN12G0496' => 'fan', 'FAN13G1027' => 'fan', 'FAN13G2951' => 'fan', 'FAN14G0705' => 'fan', 'FAN14G0720' => 'fan', 'FAN17G0201' => 'fan', 'FAN17G2665' => 'fan', 'FAN18G1456' => 'fan', 'FAN18G1525' => 'fan', 'FAN18G3500' => 'fan', 'FAN28G2670' => 'fan', 'FvH4_1g12391' => 'fve', 'FvH4_4g23220' => 'fve', 'FvH4_5g08810' => 'fve', 'FvH4_5g28960' => 'fve', 'FvH4_6g42820' => 'fve', 'FvH4_6g51110' => 'fve', 'Glyma.02G051802' => 'gma', 'Glyma.04G185300' => 'gma', 'Glyma.05G202900' => 'gma', 'Glyma.08G010300' => 'gma', 'Glyma.16G131900' => 'gma', 'Glyma.17G087900' => 'gma', 'Gohir.A07G048600' => 'ghi', 'Gohir.A11G179000' => 'ghi', 'Gohir.A12G140900' => 'ghi', 'Gohir.A12G140950' => 'ghi', 'Gohir.A12G191700' => 'ghi', 'Gohir.A13G086300' => 'ghi', 'Gohir.D07G052900' => 'ghi', 'Gohir.D11G186600' => 'ghi', 'Gohir.D12G145575' => 'ghi', 'Gohir.D12G145650' => 'ghi', 'Gohir.D12G145725' => 'ghi', 'Gohir.D12G194050' => 'ghi', 'Gohir.D13G091800' => 'ghi', 'Gorai.001G055900' => 'gra', 'Gorai.007G198400' => 'gra', 'Gorai.008G157000' => 'gra', 'Gorai.008G157100' => 'gra', 'Gorai.008G208700' => 'gra', 'Gorai.010G138700' => 'gra', 'GSVIVG01000977001' => 'vvi', 'GSVIVG01007708001' => 'vvi', 'GSVIVG01008587001' => 'vvi', 'GSVIVG01018849001' => 'vvi', 'GSVIVG01032432001' => 'vvi', 'HanXRQChr02g0034131' => 'han', 'HanXRQChr02g0035981' => 'han', 'HanXRQChr02g0035991' => 'han', 'HanXRQChr05g0155611' => 'han', 'HanXRQChr05g0155621' => 'han', 'HanXRQChr08g0236501' => 'han', 'HanXRQChr09g0261321' => 'han', 'HanXRQChr09g0272081' => 'han', 'HanXRQChr10g0310741' => 'han', 'HanXRQChr11g0325591' => 'han', 'HanXRQChr12g0385691' => 'han', 'HanXRQChr13g0387801' => 'han', 'HanXRQChr15g0463011' => 'han', 'Haze_03826' => 'cav', 'Haze_03827' => 'cav', 'Haze_07183' => 'cav', 'Haze_07537' => 'cav', 'Haze_07539' => 'cav', 'Haze_12461' => 'cav', 'Haze_16115' => 'cav', 'Haze_16808' => 'cav', 'Haze_18531' => 'cav', 'Hma1.2p1_0046F.1_g026700' => 'hma', 'Hma1.2p1_0046F.1_g026710' => 'hma', 'Hma1.2p1_0168F.1_g074340' => 'hma', 'Hma1.2p1_0266F.1_g107030' => 'hma', 'Hma1.2p1_0266F.1_g107060' => 'hma', 'Hma1.2p1_0275F.1_g110510' => 'hma', 'Hma1.2p1_0592F.1_g185490' => 'hma', 'Hma1.2p1_0592F.1_g185500' => 'hma', 'Hma1.2p1_0592F.1_g185510' => 'hma', 'Hma1.2p1_0592F.1_g185520' => 'hma', 'Hma1.2p1_0592F.1_g185530' => 'hma', 'Hma1.2p1_0818F.1_g223450' => 'hma', 'HPP92_009708' => 'vpl', 'HPP92_009793' => 'vpl', 'HPP92_009796' => 'vpl', 'HPP92_009797' => 'vpl', 'HPP92_014940' => 'vpl', 'HPP92_014988' => 'vpl', 'Hund02463' => 'sun', 'Hund02760' => 'sun', 'Hund05071' => 'sun', 'Hund10108' => 'sun', 'Hund11204' => 'sun', 'Hund14016' => 'sun', 'Hund16464' => 'sun', 'Lalb_Chr09g0333391' => 'lal', 'Lalb_Chr11g0070461' => 'lal', 'Lalb_Chr12g0201671' => 'lal', 'Lalb_Chr13g0297161' => 'lal', 'Lj1g0002823' => 'lja', 'Lj3C1074T6' => 'lonja', 'Lj4A212T28' => 'lonja', 'Lj4g0005516' => 'lja', 'Lj4g0013705' => 'lja', 'Lj4g0027865' => 'lja', 'Lj5C92G16' => 'lonja', 'Lj5C92T12' => 'lonja', 'Lj7C596T3' => 'lonja', 'Lj9A446G59' => 'lonja', 'Lj9A482G21' => 'lonja', 'Lsat_1_v5_gn_1_28261' => 'lsa', 'Lsat_1_v5_gn_1_28281' => 'lsa', 'Lsat_1_v5_gn_1_32721' => 'lsa', 'Lsat_1_v5_gn_4_151760' => 'lsa', 'Lsat_1_v5_gn_4_2120' => 'lsa', 'Lsat_1_v5_gn_4_75761' => 'lsa', 'Lsat_1_v5_gn_5_10920' => 'lsa', 'Manes.02G099900' => 'mes', 'Manes.11G096200' => 'mes', 'Manes.12G007200' => 'mes', 'Manes.14G048300' => 'mes', 'Manes.17G114700' => 'mes', 'Mapoly0002s0070' => 'mpo', 'Mapoly0029s0099' => 'mpo', 'MBI07_g24742_MAGBIO' => 'mbi', 'MBI10_g27988_MAGBIO' => 'mbi', 'MBI11_g13057_MAGBIO' => 'mbi', 'MD02G1137200' => 'mdo', 'MD06G1137200' => 'mdo', 'MD07G1122300' => 'mdo', 'MD09G1078200' => 'mdo', 'MD13G1123700' => 'mdo', 'MD14G1151900' => 'mdo', 'MD17G1030900' => 'mdo', 'MD17G1068200' => 'mdo', 'MD17G1068600' => 'mdo', 'Medtr3g077540' => 'mtr', 'Medtr4g105530' => 'mtr', 'Medtr8g076580' => 'mtr', 'Medtr8g076590' => 'mtr', 'Medtr8g096410' => 'mtr', 'MELO3C016411.2' => 'cme', 'MELO3C017780.2' => 'cme', 'MELO3C022560.2' => 'cme', 'MELO3C026187.2' => 'cme', 'MELO3C026286.2' => 'cme', 'MELO3C032854.2' => 'cme', 'Migut.H02495' => 'egut', 'Migut.I00561' => 'egut', 'Migut.K01015' => 'egut', 'Migut.K01016' => 'egut', 'Migut.L00743' => 'egut', 'Migut.L00744' => 'egut', 'Migut.L00746' => 'egut', 'Migut.L00798' => 'egut', 'Migut.L00799' => 'egut', 'Migut.N02096' => 'egut', 'MSTRG.11259' => 'ama', 'MSTRG.23142' => 'ama', 'MSTRG.2499' => 'ama', 'Nitab4.5_0000003g0730' => 'nta', 'Nitab4.5_0000137g0020' => 'nta', 'Nitab4.5_0000721g0210' => 'nta', 'Nitab4.5_0000723g0050' => 'nta', 'Nitab4.5_0000913g0070' => 'nta', 'Nitab4.5_0001332g0040' => 'nta', 'Nitab4.5_0001771g0050' => 'nta', 'Nitab4.5_0001918g0050' => 'nta', 'Nitab4.5_0002686g0030' => 'nta', 'Nitab4.5_0003156g0020' => 'nta', 'Nitab4.5_0003383g0040' => 'nta', 'Nitab4.5_0003918g0010' => 'nta', 'Nitab4.5_0006760g0010' => 'nta', 'Nn1g05981' => 'nnu', 'Nn1g06288' => 'nnu', 'Nn3g16371' => 'nnu', 'Nn3g16786' => 'nnu', 'Nn4g22232' => 'nnu', 'Oeu005144.1' => 'oeu', 'Oeu005145.1' => 'oeu', 'Oeu011348.1' => 'oeu', 'Oeu016415.1' => 'oeu', 'Oeu023501.1' => 'oeu', 'Oeu044473.1' => 'oeu', 'Oeu048892.2' => 'oeu', 'Os01g0549200' => 'osa', 'Os02g0469300' => 'osa', 'Os04g0311100' => 'osa', 'Os06g0474900' => 'osa', 'Os10g0181700' => 'osa', 'Os11g0454800' => 'osa', 'Peaxi162Scf00037g00714' => 'pax', 'Peaxi162Scf00084g01217' => 'pax', 'Peaxi162Scf00257g00217' => 'pax', 'Peaxi162Scf00516g00215' => 'pax', 'Peaxi162Scf00689g00123' => 'pax', 'PGR044G2719' => 'pgr', 'PGR083G1360' => 'pgr', 'PGR102G2849' => 'pgr', 'PGR119G2534' => 'pgr', 'PGSC0003DMG400003538' => 'stu', 'PGSC0003DMG400028138' => 'stu', 'PGSC0003DMG400031732' => 'stu', 'PGSC0003DMG400038165' => 'stu', 'Phvul.002G284600' => 'pvu', 'Phvul.003G258200' => 'pvu', 'Phvul.009G176500' => 'pvu', 'Potri.003G167201' => 'ptr', 'Potri.005G118400' => 'ptr', 'Potri.012G089000' => 'ptr', 'Potri.012G102800' => 'ptr', 'Potri.015G079400' => 'ptr', 'Potri.015G100900' => 'ptr', 'Pp3c14_9810' => 'ppa', 'Pp3c15_10450' => 'ppa', 'Pp3c20_19150' => 'ppa', 'Pp3c23_12740' => 'ppa', 'Pp3c23_6310' => 'ppa', 'Pp3c24_3720' => 'ppa', 'Pp3c27_2580' => 'ppa', 'Pp3c9_8990' => 'ppa', 'PRCOL_00002854' => 'pco', 'Prupe.1G221200' => 'ppe', 'Prupe.3G289000' => 'ppe', 'Prupe.5G147000' => 'ppe', 'Prupe.6G157300' => 'ppe', 'Prupe.7G163400' => 'ppe', 'Psat0s2177g0040' => 'psa', 'Psat3g174760' => 'psa', 'Psat3g192160' => 'psa', 'Psat4g058520' => 'psa', 'Psat4g096840' => 'psa', 'Psat7g037320' => 'psa', 'PSO017G1274' => 'pso', 'PSO017G5166' => 'pso', 'PSO063G4558' => 'pso', 'PSO170G4458' => 'pso', 'PSO170G5005' => 'pso', 'PSO210G6156' => 'pso', 'PSO210G6635' => 'pso', 'PSO210G7397' => 'pso', 'PSO210G7700' => 'pso', 'PSO455G0035' => 'pso', 'PSO455G0180' => 'pso', 'PSO478G4515' => 'pso', 'PSO832G1305' => 'pso', 'PSO832G3489' => 'pso', 'QL02p075247' => 'qlo', 'QL03p051148' => 'qlo', 'QL05p010313' => 'qlo', 'QL06p034627' => 'qlo', 'QL10p001889' => 'qlo', 'QL10p010846' => 'qlo', 'RcHm_v2.0_Chr1g0350621' => 'rch', 'RcHm_v2.0_Chr1g0350641' => 'rch', 'RcHm_v2.0_Chr2g0092891' => 'rch', 'RcHm_v2.0_Chr2g0100251' => 'rch', 'RcHm_v2.0_Chr2g0158661' => 'rch', 'RcHm_v2.0_Chr2g0172741' => 'rch', 'RcHm_v2.0_Chr4g0429571' => 'rch', 'RcHm_v2.0_Chr5g0042471' => 'rch', 'RcHm_v2.0_Chr7g0189451' => 'rch', 'Rhsim08G0052000' => 'rsi', 'Rhsim08G0174400' => 'rsi', 'Rhsim08G0193200' => 'rsi', 'Rhsim10G0214800' => 'rsi', 'Rhsim10G0214900' => 'rsi', 'Rhsim10G0215000' => 'rsi', 'Rhsim12G0022900' => 'rsi', 'Rhsim12G0177500' => 'rsi', 'Rhsim12G0177700' => 'rsi', 'Sabra03G0122600' => 'sbr', 'Sabra05G0097400' => 'sbr', 'Sabra12G0064100' => 'sbr', 'Sabra15G0121300' => 'sbr', 'SalBow2G0642' => 'sbo', 'SalBow5G2667' => 'sbo', 'SalBow5G4873' => 'sbo', 'SalBow8G2395' => 'sbo', 'Sc03g0003290' => 'sci', 'Sc10g0010130' => 'sci', 'Sc22g0003650' => 'sci', 'Sed0001603' => 'sed', 'Sed0004259' => 'sed', 'Sed0006789' => 'sed', 'Sed0011838' => 'sed', 'Sed0012964' => 'sed', 'Sed0016383' => 'sed', 'Sed0019010' => 'sed', 'Sed0020188' => 'sed', 'SEGI_04702' => 'sgi', 'SEGI_17231' => 'sgi', 'SEGI_18877' => 'sgi', 'SEGI_25196' => 'sgi', 'SEGI_25515' => 'sgi', 'SEGI_28445' => 'sgi', 'SEGI_37452' => 'sgi', 'SGA_v2.0_scaffold188G40336' => 'sas', 'SGA_v2.0_scaffold228G43247' => 'sas', 'SGA_v2.0_scaffold280G46853' => 'sas', 'SGA_v2.0_scaffold34G13808' => 'sas', 'SGA_v2.0_scaffold40G15576' => 'sas', 'SGA_v2.0_scaffold611G53188' => 'sas', 'SGA_v2.0_scaffold78G25461' => 'sas', 'SGA_v2.0_scaffold90G27888' => 'sas', 'SHI08601' => 'shi', 'SHI08606' => 'shi', 'SHI17117' => 'shi', 'SHI17119' => 'shi', 'SMO118G0201' => 'smo', 'SMO169G0247' => 'smo', 'SMO176G0006' => 'smo', 'SMO176G0015' => 'smo', 'SMO202G0006' => 'smo', 'SMO240G0050' => 'smo', 'SMO286G0009' => 'smo', 'SMO338G0033' => 'smo', 'SMO356G0533' => 'smo', 'SMO364G0382' => 'smo', 'SMO367G0166' => 'smo', 'SMO367G1098' => 'smo', 'Solyc01g009920.3' => 'sly', 'Solyc01g099300.3' => 'sly', 'Solyc02g084700.3' => 'sly', 'Solyc03g097520.3' => 'sly', 'Solyc06g071580.3' => 'sly', 'Solyc10g081760.3' => 'sly', 'Sopen01g005480' => 'spe', 'Sopen01g042850' => 'spe', 'Sopen02g029370' => 'spe', 'Sopen03g028280' => 'spe', 'Sopen06g027870' => 'spe', 'Sopen10g032270' => 'spe', 'Sp5g18180' => 'spa', 'Sp6g12880' => 'spa', 'Sp6g30850' => 'spa', 'Sp7g22960' => 'spa', 'Sp7g34010' => 'spa', 'SpUn1326_0010' => 'spa', 'TAR371G0242' => 'tar', 'TAR622G0638' => 'tar', 'TAR628G1548' => 'tar', 'TAR629G1079' => 'tar', 'TAR629G3413' => 'tar', 'THA.LOC104804249' => 'tha', 'THA.LOC104808315' => 'tha', 'THA.LOC104809238' => 'tha', 'THA.LOC104825484' => 'tha', 'Thecc.01G025500' => 'tca', 'Thecc.03G015800' => 'tca', 'Thecc.03G018000' => 'tca', 'Thecc.03G134800' => 'tca', 'Thecc.04G014700' => 'tca', 'Thhalv10006991m.g' => 'esa', 'Thhalv10012707m.g' => 'esa', 'Thhalv10015739m.g' => 'esa', 'Thhalv10024553m.g' => 'esa', 'Thhalv10024673m.g' => 'esa', 'Thhalv10029187m.g' => 'esa', 'TPR.G12971' => 'tpr', 'TPR.G29396' => 'tpr', 'TPR.G33376' => 'tpr', 'TPR.G35508' => 'tpr', 'TPR.G35516' => 'tpr', 'TPR.G37317' => 'tpr', 'TPR.G37389' => 'tpr', 'TPR.G37523' => 'tpr', 'TPR.G559' => 'tpr', 'TWI14G0070' => 'twi', 'TWI14G0729' => 'twi', 'TWI18G0596' => 'twi', 'TWI39G0780' => 'twi', 'TWI39G0850' => 'twi', 'TWI73G1052' => 'twi', 'unitig_52.g17485' => 'ugi', 'unitig_61.g26355' => 'ugi', 'vmacro01040' => 'vma', 'vmacro16731' => 'vma', 'vmacro18270' => 'vma', 'vmacro19142' => 'vma', 'vmacro19407' => 'vma', 'vmacro19408' => 'vma', 'vmacro21899' => 'vma', 'vmacro21900' => 'vma', 'vmacro21901' => 'vma', 'VMungo0251G0490' => 'vmu', 'VMungo0251G1748' => 'vmu', 'VMungo1309G0421' => 'vmu', 'Zm00001eb086500' => 'zma', 'Zm00001eb150680' => 'zma', 'Zm00001eb162330' => 'zma', 'Zm00001eb203130' => 'zma', 'Zm00001eb369480' => 'zma', 'Zm00001eb382340' => 'zma', 'Zm00001eb416360' => 'zma' ), 'gf_id' => 'HOM05D000902', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000902' ), 'data_identifier' => 'HOM05D000902', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000902', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '663', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02470' => 'bna', 'A01p16260' => 'bna', 'A02p01680' => 'bna', 'A03p16600' => 'bna', 'A03p55660' => 'bna', 'A03p64160' => 'bna', 'A03p64170' => 'bna', 'A08p31900' => 'bna', 'A09p59530' => 'bna', 'A10p08230' => 'bna', 'A10p25090' => 'bna', 'Aa31LG3G7100' => 'aar', 'Aa31LG3G7110' => 'aar', 'Aa31LG6G13160' => 'aar', 'Aa31LG7G10770' => 'aar', 'Aa31LG7G3830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2723' => 'aag', 'Actinidia08045' => 'ach', 'Actinidia08888' => 'ach', 'Actinidia18333' => 'ach', 'Actinidia19334' => 'ach', 'Actinidia25552' => 'ach', 'Actinidia26089' => 'ach', 'Actinidia30615' => 'ach', 'Actinidia30616' => 'ach', 'Actinidia33083' => 'ach', 'Actinidia35762' => 'ach', 'Ah.02g110620' => 'amhyb', 'Ah.11g046390' => 'amhyb', 'AL1G31670' => 'aly', 'AL6G23730' => 'aly', 'AL7G14740' => 'aly', 'AL7G14750' => 'aly', 'AL7G14760' => 'aly', 'AL7G28220' => 'aly', 'AL8G24940' => 'aly', 'Aqoxy3G01665' => 'aox', 'Aqoxy3G02853' => 'aox', 'Aqoxy5G01513' => 'aox', 'Aqoxy5G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8SKA4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ75LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKDA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0LJZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7REX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZP4YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWX7I5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2QKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS0L9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPCD8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q161UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC7XCF' => 'arhy', 'AT1G19100' => 'ath', 'AT4G24970' => 'ath', 'AT4G36270' => 'ath', 'AT4G36280' => 'ath', 'AT4G36290' => 'ath', 'AT5G13130' => 'ath', 'AT5G50780' => 'ath', 'ATR0582G266' => 'atr', 'ATR0661G195' => 'atr', 'ATR1152G031' => 'atr', 'Atru.chr11.2382' => 'acertr', 'Atru.chr12.2337' => 'acertr', 'Atru.chr3.744' => 'acertr', 'Atru.chr6.1870' => 'acertr', 'Atru.chr9.2515' => 'acertr', 'AUR62004120' => 'cqu', 'AUR62005667' => 'cqu', 'AUR62007634' => 'cqu', 'AUR62008186' => 'cqu', 'AUR62008187' => 'cqu', 'AUR62008188' => 'cqu', 'AUR62027954' => 'cqu', 'AUR62028766' => 'cqu', 'AUR62028767' => 'cqu', 'AUR62028768' => 'cqu', 'AUR62028886' => 'cqu', 'AUR62029563' => 'cqu', 'AUR62038832' => 'cqu', 'BcaB01g04149' => 'bca', 'BcaB03g12940' => 'bca', 'BcaB03g13090' => 'bca', 'BcaB03g14466' => 'bca', 'BcaB05g24035' => 'bca', 'BcaC01g06050' => 'bca', 'BcaC04g19148' => 'bca', 'BcaC04g20761' => 'bca', 'BcaC06g32845' => 'bca', 'BcaC07g41274' => 'bca', 'BcaC09g50827' => 'bca', 'BcaNung00741' => 'bca', 'BcaNung00742' => 'bca', 'BcaNung01859' => 'bca', 'BcaNung03985' => 'bca', 'BcaNung03989' => 'bca', 'BcaNung05661' => 'bca', 'BolC1t00257H' => 'bol', 'BolC1t01956H' => 'bol', 'BolC2t06534H' => 'bol', 'BolC3t14334H' => 'bol', 'BolC5t30451H' => 'bol', 'BolC7t45880H' => 'bol', 'BolC7t46586H' => 'bol', 'BolC8t49301H' => 'bol', 'BolC8t51837H' => 'bol', 'BolC9t56822H' => 'bol', 'BolC9t59235H' => 'bol', 'BraA01t00234Z' => 'bra', 'BraA01t01563Z' => 'bra', 'BraA02t05147Z' => 'bra', 'BraA03t10947Z' => 'bra', 'BraA03t14633Z' => 'bra', 'BraA08t35112Z' => 'bra', 'BraA09t41330Z' => 'bra', 'BraA10t44570Z' => 'bra', 'C01p02670' => 'bna', 'C01p20260' => 'bna', 'C02p05890' => 'bna', 'C03p19530' => 'bna', 'C05p17470' => 'bna', 'C07p53900' => 'bna', 'C07p61630' => 'bna', 'C08p16800' => 'bna', 'C08p42810' => 'bna', 'C09p39480' => 'bna', 'C09p63980' => 'bna', 'CAN.G1001.7' => 'can', 'CAN.G1034.55' => 'can', 'CAN.G143.7' => 'can', 'CAN.G3340.1' => 'can', 'CAN.G358.19' => 'can', 'CAN.G373.2' => 'can', 'CAN.G674.16' => 'can', 'CAN.G674.17' => 'can', 'CAN.G674.18' => 'can', 'CAN.G732.2' => 'can', 'CAN.G732.3' => 'can', 'CAN.G993.39' => 'can', 'CANSAT01G2052' => 'cansat', 'CANSAT80G0070' => 'cansat', 'CANSAT80G0483' => 'cansat', 'CANSAT80G0625' => 'cansat', 'CARHR019690' => 'chi', 'CARHR080280' => 'chi', 'CARHR152750' => 'chi', 'CARHR152760' => 'chi', 'CARHR152770' => 'chi', 'CARHR200340' => 'chi', 'CARHR232370' => 'chi', 'CARHR244670' => 'chi', 'CARHR244680' => 'chi', 'CARHR257520' => 'chi', 'Carub.0001s1872' => 'cru', 'Carub.0006s1130' => 'cru', 'Carub.0007s0396' => 'cru', 'Carub.0007s0397' => 'cru', 'Carub.0007s1608' => 'cru', 'Carub.0008s1068' => 'cru', 'Carub.0008s1077' => 'cru', 'Ca_16158_v3' => 'car', 'Ca_17571_v3' => 'car', 'Ca_21936_v3' => 'car', 'Ca_22350_v3' => 'car', 'CBR_g22445' => 'cbr', 'CBR_g26290' => 'cbr', 'Cc04_g09610' => 'ccan', 'Cc04_g12280' => 'ccan', 'Cc07_g10230' => 'ccan', 'CDE02G0093' => 'cde', 'CDE02G0701' => 'cde', 'CDE04G1050' => 'cde', 'CDE05G1833' => 'cde', 'CDE05G3058' => 'cde', 'CDE05G3380' => 'cde', 'CDE06G0536' => 'cde', 'Cfa006923' => 'cfa', 'Cfa009402' => 'cfa', 'Cfa018751' => 'cfa', 'Cfa019164' => 'cfa', 'Cfa022935' => 'cfa', 'Ciclev10019081m.g' => 'ccl', 'Ciclev10025076m.g' => 'ccl', 'Ciclev10030712m.g' => 'ccl', 'Ciclev10033760m.g' => 'ccl', 'CiPaw.05G105600' => 'cil', 'CiPaw.08G136700' => 'cil', 'CiPaw.11G003900' => 'cil', 'CiPaw.11G023700' => 'cil', 'CiPaw.12G003700' => 'cil', 'ClCG06G017100' => 'cla', 'ClCG06G018110' => 'cla', 'ClCG07G008800' => 'cla', 'ClCG07G015330' => 'cla', 'COL.COLO4_13698' => 'col', 'COL.COLO4_16659' => 'col', 'COL.COLO4_21986' => 'col', 'COL.COLO4_24049' => 'col', 'COL.COLO4_29061' => 'col', 'COL.COLO4_29075' => 'col', 'COL.COLO4_30094' => 'col', 'Cpa.g.c33689' => 'cpa', 'Cpa.g.sc108.39' => 'cpa', 'Cpa.g.sc108.41' => 'cpa', 'Cpa.g.sc1163.1' => 'cpa', 'Cpa.g.sc4.155' => 'cpa', 'Cpa.g.sc6.194' => 'cpa', 'CsaV3_1G000340' => 'csa', 'CsaV3_1G001400' => 'csa', 'CsaV3_4G002220' => 'csa', 'CsaV3_4G005370' => 'csa', 'CSS0007487' => 'camsi', 'CSS0008066' => 'camsi', 'CSS0009120' => 'camsi', 'CSS0015512' => 'camsi', 'CSS0022409' => 'camsi', 'CSS0025358' => 'camsi', 'CSS0044547' => 'camsi', 'DCAR_013057' => 'dca', 'DCAR_015058' => 'dca', 'DCAR_016027' => 'dca', 'DCAR_017327' => 'dca', 'DCAR_020743' => 'dca', 'DCAR_026157' => 'dca', 'DCAR_032339' => 'dca', 'DCAR_032340' => 'dca', 'Dinv11200' => 'din', 'Dinv11201' => 'din', 'Dinv20631' => 'din', 'Dinv23182' => 'din', 'Dinv33466' => 'din', 'Dinv33583' => 'din', 'Dinv38565' => 'din', 'Duzib068G0200' => 'dzi', 'Duzib147G0132' => 'dzi', 'Duzib147G0635' => 'dzi', 'Duzib205G1670' => 'dzi', 'Duzib251G0606' => 'dzi', 'ECA232G3336' => 'eca', 'ECA232G3763' => 'eca', 'ECA232G4845' => 'eca', 'ECA234G1607' => 'eca', 'ECA246G0932' => 'eca', 'ECA247G0781' => 'eca', 'ECA247G1932' => 'eca', 'ECA247G2079' => 'eca', 'ECA247G3338' => 'eca', 'ECA247G4115' => 'eca', 'EL10Ac3g06552' => 'bvu', 'EL10Ac5g10721' => 'bvu', 'EL10Ac5g10722' => 'bvu', 'EL10Ac5g10723' => 'bvu', 'EL10Ac5g11361' => 'bvu', 'EL10Ac6g13553' => 'bvu', 'EL10As8g23872' => 'bvu', 'Eucgr.B00250' => 'egr', 'Eucgr.B00251' => 'egr', 'Eucgr.B03533' => 'egr', 'Eucgr.I02381' => 'egr', 'Eucgr.K02700' => 'egr', 'FAN02G0174' => 'fan', 'FAN02G3146' => 'fan', 'FAN04G1672' => 'fan', 'FAN04G2273' => 'fan', 'FAN05G2791' => 'fan', 'FAN05G4035' => 'fan', 'FAN07G0834' => 'fan', 'FAN08G1198' => 'fan', 'FAN09G4182' => 'fan', 'FAN12G0496' => 'fan', 'FAN13G1027' => 'fan', 'FAN13G2951' => 'fan', 'FAN14G0705' => 'fan', 'FAN14G0720' => 'fan', 'FAN17G0201' => 'fan', 'FAN17G2665' => 'fan', 'FAN18G1456' => 'fan', 'FAN18G1525' => 'fan', 'FAN18G3500' => 'fan', 'FAN28G2670' => 'fan', 'FvH4_1g12391' => 'fve', 'FvH4_4g23220' => 'fve', 'FvH4_5g08810' => 'fve', 'FvH4_5g28960' => 'fve', 'FvH4_6g42820' => 'fve', 'FvH4_6g51110' => 'fve', 'Glyma.02G051802' => 'gma', 'Glyma.04G185300' => 'gma', 'Glyma.05G202900' => 'gma', 'Glyma.08G010300' => 'gma', 'Glyma.16G131900' => 'gma', 'Glyma.17G087900' => 'gma', 'Gohir.A07G048600' => 'ghi', 'Gohir.A11G179000' => 'ghi', 'Gohir.A12G140900' => 'ghi', 'Gohir.A12G140950' => 'ghi', 'Gohir.A12G191700' => 'ghi', 'Gohir.A13G086300' => 'ghi', 'Gohir.D07G052900' => 'ghi', 'Gohir.D11G186600' => 'ghi', 'Gohir.D12G145575' => 'ghi', 'Gohir.D12G145650' => 'ghi', 'Gohir.D12G145725' => 'ghi', 'Gohir.D12G194050' => 'ghi', 'Gohir.D13G091800' => 'ghi', 'Gorai.001G055900' => 'gra', 'Gorai.007G198400' => 'gra', 'Gorai.008G157000' => 'gra', 'Gorai.008G157100' => 'gra', 'Gorai.008G208700' => 'gra', 'Gorai.010G138700' => 'gra', 'GSVIVG01000977001' => 'vvi', 'GSVIVG01007708001' => 'vvi', 'GSVIVG01008587001' => 'vvi', 'GSVIVG01018849001' => 'vvi', 'GSVIVG01032432001' => 'vvi', 'HanXRQChr02g0034131' => 'han', 'HanXRQChr02g0035981' => 'han', 'HanXRQChr02g0035991' => 'han', 'HanXRQChr05g0155611' => 'han', 'HanXRQChr05g0155621' => 'han', 'HanXRQChr08g0236501' => 'han', 'HanXRQChr09g0261321' => 'han', 'HanXRQChr09g0272081' => 'han', 'HanXRQChr10g0310741' => 'han', 'HanXRQChr11g0325591' => 'han', 'HanXRQChr12g0385691' => 'han', 'HanXRQChr13g0387801' => 'han', 'HanXRQChr15g0463011' => 'han', 'Haze_03826' => 'cav', 'Haze_03827' => 'cav', 'Haze_07183' => 'cav', 'Haze_07537' => 'cav', 'Haze_07539' => 'cav', 'Haze_12461' => 'cav', 'Haze_16115' => 'cav', 'Haze_16808' => 'cav', 'Haze_18531' => 'cav', 'Hma1.2p1_0046F.1_g026700' => 'hma', 'Hma1.2p1_0046F.1_g026710' => 'hma', 'Hma1.2p1_0168F.1_g074340' => 'hma', 'Hma1.2p1_0266F.1_g107030' => 'hma', 'Hma1.2p1_0266F.1_g107060' => 'hma', 'Hma1.2p1_0275F.1_g110510' => 'hma', 'Hma1.2p1_0592F.1_g185490' => 'hma', 'Hma1.2p1_0592F.1_g185500' => 'hma', 'Hma1.2p1_0592F.1_g185510' => 'hma', 'Hma1.2p1_0592F.1_g185520' => 'hma', 'Hma1.2p1_0592F.1_g185530' => 'hma', 'Hma1.2p1_0818F.1_g223450' => 'hma', 'HPP92_009708' => 'vpl', 'HPP92_009793' => 'vpl', 'HPP92_009796' => 'vpl', 'HPP92_009797' => 'vpl', 'HPP92_014940' => 'vpl', 'HPP92_014988' => 'vpl', 'Hund02463' => 'sun', 'Hund02760' => 'sun', 'Hund05071' => 'sun', 'Hund10108' => 'sun', 'Hund11204' => 'sun', 'Hund14016' => 'sun', 'Hund16464' => 'sun', 'Lalb_Chr09g0333391' => 'lal', 'Lalb_Chr11g0070461' => 'lal', 'Lalb_Chr12g0201671' => 'lal', 'Lalb_Chr13g0297161' => 'lal', 'Lj1g0002823' => 'lja', 'Lj3C1074T6' => 'lonja', 'Lj4A212T28' => 'lonja', 'Lj4g0005516' => 'lja', 'Lj4g0013705' => 'lja', 'Lj4g0027865' => 'lja', 'Lj5C92G16' => 'lonja', 'Lj5C92T12' => 'lonja', 'Lj7C596T3' => 'lonja', 'Lj9A446G59' => 'lonja', 'Lj9A482G21' => 'lonja', 'Lsat_1_v5_gn_1_28261' => 'lsa', 'Lsat_1_v5_gn_1_28281' => 'lsa', 'Lsat_1_v5_gn_1_32721' => 'lsa', 'Lsat_1_v5_gn_4_151760' => 'lsa', 'Lsat_1_v5_gn_4_2120' => 'lsa', 'Lsat_1_v5_gn_4_75761' => 'lsa', 'Lsat_1_v5_gn_5_10920' => 'lsa', 'Manes.02G099900' => 'mes', 'Manes.11G096200' => 'mes', 'Manes.12G007200' => 'mes', 'Manes.14G048300' => 'mes', 'Manes.17G114700' => 'mes', 'Mapoly0002s0070' => 'mpo', 'Mapoly0029s0099' => 'mpo', 'MBI07_g24742_MAGBIO' => 'mbi', 'MBI10_g27988_MAGBIO' => 'mbi', 'MBI11_g13057_MAGBIO' => 'mbi', 'MD02G1137200' => 'mdo', 'MD06G1137200' => 'mdo', 'MD07G1122300' => 'mdo', 'MD09G1078200' => 'mdo', 'MD13G1123700' => 'mdo', 'MD14G1151900' => 'mdo', 'MD17G1030900' => 'mdo', 'MD17G1068200' => 'mdo', 'MD17G1068600' => 'mdo', 'Medtr3g077540' => 'mtr', 'Medtr4g105530' => 'mtr', 'Medtr8g076580' => 'mtr', 'Medtr8g076590' => 'mtr', 'Medtr8g096410' => 'mtr', 'MELO3C016411.2' => 'cme', 'MELO3C017780.2' => 'cme', 'MELO3C022560.2' => 'cme', 'MELO3C026187.2' => 'cme', 'MELO3C026286.2' => 'cme', 'MELO3C032854.2' => 'cme', 'Migut.H02495' => 'egut', 'Migut.I00561' => 'egut', 'Migut.K01015' => 'egut', 'Migut.K01016' => 'egut', 'Migut.L00743' => 'egut', 'Migut.L00744' => 'egut', 'Migut.L00746' => 'egut', 'Migut.L00798' => 'egut', 'Migut.L00799' => 'egut', 'Migut.N02096' => 'egut', 'MSTRG.11259' => 'ama', 'MSTRG.23142' => 'ama', 'MSTRG.2499' => 'ama', 'Nitab4.5_0000003g0730' => 'nta', 'Nitab4.5_0000137g0020' => 'nta', 'Nitab4.5_0000721g0210' => 'nta', 'Nitab4.5_0000723g0050' => 'nta', 'Nitab4.5_0000913g0070' => 'nta', 'Nitab4.5_0001332g0040' => 'nta', 'Nitab4.5_0001771g0050' => 'nta', 'Nitab4.5_0001918g0050' => 'nta', 'Nitab4.5_0002686g0030' => 'nta', 'Nitab4.5_0003156g0020' => 'nta', 'Nitab4.5_0003383g0040' => 'nta', 'Nitab4.5_0003918g0010' => 'nta', 'Nitab4.5_0006760g0010' => 'nta', 'Nn1g05981' => 'nnu', 'Nn1g06288' => 'nnu', 'Nn3g16371' => 'nnu', 'Nn3g16786' => 'nnu', 'Nn4g22232' => 'nnu', 'Oeu005144.1' => 'oeu', 'Oeu005145.1' => 'oeu', 'Oeu011348.1' => 'oeu', 'Oeu016415.1' => 'oeu', 'Oeu023501.1' => 'oeu', 'Oeu044473.1' => 'oeu', 'Oeu048892.2' => 'oeu', 'Os01g0549200' => 'osa', 'Os02g0469300' => 'osa', 'Os04g0311100' => 'osa', 'Os06g0474900' => 'osa', 'Os10g0181700' => 'osa', 'Os11g0454800' => 'osa', 'Peaxi162Scf00037g00714' => 'pax', 'Peaxi162Scf00084g01217' => 'pax', 'Peaxi162Scf00257g00217' => 'pax', 'Peaxi162Scf00516g00215' => 'pax', 'Peaxi162Scf00689g00123' => 'pax', 'PGR044G2719' => 'pgr', 'PGR083G1360' => 'pgr', 'PGR102G2849' => 'pgr', 'PGR119G2534' => 'pgr', 'PGSC0003DMG400003538' => 'stu', 'PGSC0003DMG400028138' => 'stu', 'PGSC0003DMG400031732' => 'stu', 'PGSC0003DMG400038165' => 'stu', 'Phvul.002G284600' => 'pvu', 'Phvul.003G258200' => 'pvu', 'Phvul.009G176500' => 'pvu', 'Potri.003G167201' => 'ptr', 'Potri.005G118400' => 'ptr', 'Potri.012G089000' => 'ptr', 'Potri.012G102800' => 'ptr', 'Potri.015G079400' => 'ptr', 'Potri.015G100900' => 'ptr', 'Pp3c14_9810' => 'ppa', 'Pp3c15_10450' => 'ppa', 'Pp3c20_19150' => 'ppa', 'Pp3c23_12740' => 'ppa', 'Pp3c23_6310' => 'ppa', 'Pp3c24_3720' => 'ppa', 'Pp3c27_2580' => 'ppa', 'Pp3c9_8990' => 'ppa', 'PRCOL_00002854' => 'pco', 'Prupe.1G221200' => 'ppe', 'Prupe.3G289000' => 'ppe', 'Prupe.5G147000' => 'ppe', 'Prupe.6G157300' => 'ppe', 'Prupe.7G163400' => 'ppe', 'Psat0s2177g0040' => 'psa', 'Psat3g174760' => 'psa', 'Psat3g192160' => 'psa', 'Psat4g058520' => 'psa', 'Psat4g096840' => 'psa', 'Psat7g037320' => 'psa', 'PSO017G1274' => 'pso', 'PSO017G5166' => 'pso', 'PSO063G4558' => 'pso', 'PSO170G4458' => 'pso', 'PSO170G5005' => 'pso', 'PSO210G6156' => 'pso', 'PSO210G6635' => 'pso', 'PSO210G7397' => 'pso', 'PSO210G7700' => 'pso', 'PSO455G0035' => 'pso', 'PSO455G0180' => 'pso', 'PSO478G4515' => 'pso', 'PSO832G1305' => 'pso', 'PSO832G3489' => 'pso', 'QL02p075247' => 'qlo', 'QL03p051148' => 'qlo', 'QL05p010313' => 'qlo', 'QL06p034627' => 'qlo', 'QL10p001889' => 'qlo', 'QL10p010846' => 'qlo', 'RcHm_v2.0_Chr1g0350621' => 'rch', 'RcHm_v2.0_Chr1g0350641' => 'rch', 'RcHm_v2.0_Chr2g0092891' => 'rch', 'RcHm_v2.0_Chr2g0100251' => 'rch', 'RcHm_v2.0_Chr2g0158661' => 'rch', 'RcHm_v2.0_Chr2g0172741' => 'rch', 'RcHm_v2.0_Chr4g0429571' => 'rch', 'RcHm_v2.0_Chr5g0042471' => 'rch', 'RcHm_v2.0_Chr7g0189451' => 'rch', 'Rhsim08G0052000' => 'rsi', 'Rhsim08G0174400' => 'rsi', 'Rhsim08G0193200' => 'rsi', 'Rhsim10G0214800' => 'rsi', 'Rhsim10G0214900' => 'rsi', 'Rhsim10G0215000' => 'rsi', 'Rhsim12G0022900' => 'rsi', 'Rhsim12G0177500' => 'rsi', 'Rhsim12G0177700' => 'rsi', 'Sabra03G0122600' => 'sbr', 'Sabra05G0097400' => 'sbr', 'Sabra12G0064100' => 'sbr', 'Sabra15G0121300' => 'sbr', 'SalBow2G0642' => 'sbo', 'SalBow5G2667' => 'sbo', 'SalBow5G4873' => 'sbo', 'SalBow8G2395' => 'sbo', 'Sc03g0003290' => 'sci', 'Sc10g0010130' => 'sci', 'Sc22g0003650' => 'sci', 'Sed0001603' => 'sed', 'Sed0004259' => 'sed', 'Sed0006789' => 'sed', 'Sed0011838' => 'sed', 'Sed0012964' => 'sed', 'Sed0016383' => 'sed', 'Sed0019010' => 'sed', 'Sed0020188' => 'sed', 'SEGI_04702' => 'sgi', 'SEGI_17231' => 'sgi', 'SEGI_18877' => 'sgi', 'SEGI_25196' => 'sgi', 'SEGI_25515' => 'sgi', 'SEGI_28445' => 'sgi', 'SEGI_37452' => 'sgi', 'SGA_v2.0_scaffold188G40336' => 'sas', 'SGA_v2.0_scaffold228G43247' => 'sas', 'SGA_v2.0_scaffold280G46853' => 'sas', 'SGA_v2.0_scaffold34G13808' => 'sas', 'SGA_v2.0_scaffold40G15576' => 'sas', 'SGA_v2.0_scaffold611G53188' => 'sas', 'SGA_v2.0_scaffold78G25461' => 'sas', 'SGA_v2.0_scaffold90G27888' => 'sas', 'SHI08601' => 'shi', 'SHI08606' => 'shi', 'SHI17117' => 'shi', 'SHI17119' => 'shi', 'SMO118G0201' => 'smo', 'SMO169G0247' => 'smo', 'SMO176G0006' => 'smo', 'SMO176G0015' => 'smo', 'SMO202G0006' => 'smo', 'SMO240G0050' => 'smo', 'SMO286G0009' => 'smo', 'SMO338G0033' => 'smo', 'SMO356G0533' => 'smo', 'SMO364G0382' => 'smo', 'SMO367G0166' => 'smo', 'SMO367G1098' => 'smo', 'Solyc01g009920.3' => 'sly', 'Solyc01g099300.3' => 'sly', 'Solyc02g084700.3' => 'sly', 'Solyc03g097520.3' => 'sly', 'Solyc06g071580.3' => 'sly', 'Solyc10g081760.3' => 'sly', 'Sopen01g005480' => 'spe', 'Sopen01g042850' => 'spe', 'Sopen02g029370' => 'spe', 'Sopen03g028280' => 'spe', 'Sopen06g027870' => 'spe', 'Sopen10g032270' => 'spe', 'Sp5g18180' => 'spa', 'Sp6g12880' => 'spa', 'Sp6g30850' => 'spa', 'Sp7g22960' => 'spa', 'Sp7g34010' => 'spa', 'SpUn1326_0010' => 'spa', 'TAR371G0242' => 'tar', 'TAR622G0638' => 'tar', 'TAR628G1548' => 'tar', 'TAR629G1079' => 'tar', 'TAR629G3413' => 'tar', 'THA.LOC104804249' => 'tha', 'THA.LOC104808315' => 'tha', 'THA.LOC104809238' => 'tha', 'THA.LOC104825484' => 'tha', 'Thecc.01G025500' => 'tca', 'Thecc.03G015800' => 'tca', 'Thecc.03G018000' => 'tca', 'Thecc.03G134800' => 'tca', 'Thecc.04G014700' => 'tca', 'Thhalv10006991m.g' => 'esa', 'Thhalv10012707m.g' => 'esa', 'Thhalv10015739m.g' => 'esa', 'Thhalv10024553m.g' => 'esa', 'Thhalv10024673m.g' => 'esa', 'Thhalv10029187m.g' => 'esa', 'TPR.G12971' => 'tpr', 'TPR.G29396' => 'tpr', 'TPR.G33376' => 'tpr', 'TPR.G35508' => 'tpr', 'TPR.G35516' => 'tpr', 'TPR.G37317' => 'tpr', 'TPR.G37389' => 'tpr', 'TPR.G37523' => 'tpr', 'TPR.G559' => 'tpr', 'TWI14G0070' => 'twi', 'TWI14G0729' => 'twi', 'TWI18G0596' => 'twi', 'TWI39G0780' => 'twi', 'TWI39G0850' => 'twi', 'TWI73G1052' => 'twi', 'unitig_52.g17485' => 'ugi', 'unitig_61.g26355' => 'ugi', 'vmacro01040' => 'vma', 'vmacro16731' => 'vma', 'vmacro18270' => 'vma', 'vmacro19142' => 'vma', 'vmacro19407' => 'vma', 'vmacro19408' => 'vma', 'vmacro21899' => 'vma', 'vmacro21900' => 'vma', 'vmacro21901' => 'vma', 'VMungo0251G0490' => 'vmu', 'VMungo0251G1748' => 'vmu', 'VMungo1309G0421' => 'vmu', 'Zm00001eb086500' => 'zma', 'Zm00001eb150680' => 'zma', 'Zm00001eb162330' => 'zma', 'Zm00001eb203130' => 'zma', 'Zm00001eb369480' => 'zma', 'Zm00001eb382340' => 'zma', 'Zm00001eb416360' => 'zma' ) $gf_id = 'HOM05D000902' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000902' ) $data_identifier = 'HOM05D000902' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 13, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 10, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 6, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 9, 'hma' => (int) 12, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 4, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 6, 'ppa' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 6, 'rch' => (int) 9, 'rsi' => (int) 9, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 12, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 3, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416360' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000902', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '663', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02470' => 'bna', 'A01p16260' => 'bna', 'A02p01680' => 'bna', 'A03p16600' => 'bna', 'A03p55660' => 'bna', 'A03p64160' => 'bna', 'A03p64170' => 'bna', 'A08p31900' => 'bna', 'A09p59530' => 'bna', 'A10p08230' => 'bna', 'A10p25090' => 'bna', 'Aa31LG3G7100' => 'aar', 'Aa31LG3G7110' => 'aar', 'Aa31LG6G13160' => 'aar', 'Aa31LG7G10770' => 'aar', 'Aa31LG7G3830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2723' => 'aag', 'Actinidia08045' => 'ach', 'Actinidia08888' => 'ach', 'Actinidia18333' => 'ach', 'Actinidia19334' => 'ach', 'Actinidia25552' => 'ach', 'Actinidia26089' => 'ach', 'Actinidia30615' => 'ach', 'Actinidia30616' => 'ach', 'Actinidia33083' => 'ach', 'Actinidia35762' => 'ach', 'Ah.02g110620' => 'amhyb', 'Ah.11g046390' => 'amhyb', 'AL1G31670' => 'aly', 'AL6G23730' => 'aly', 'AL7G14740' => 'aly', 'AL7G14750' => 'aly', 'AL7G14760' => 'aly', 'AL7G28220' => 'aly', 'AL8G24940' => 'aly', 'Aqoxy3G01665' => 'aox', 'Aqoxy3G02853' => 'aox', 'Aqoxy5G01513' => 'aox', 'Aqoxy5G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8SKA4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ75LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKDA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0LJZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7REX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZP4YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWX7I5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2QKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS0L9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPCD8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q161UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC7XCF' => 'arhy', 'AT1G19100' => 'ath', 'AT4G24970' => 'ath', 'AT4G36270' => 'ath', 'AT4G36280' => 'ath', 'AT4G36290' => 'ath', 'AT5G13130' => 'ath', 'AT5G50780' => 'ath', 'ATR0582G266' => 'atr', 'ATR0661G195' => 'atr', 'ATR1152G031' => 'atr', 'Atru.chr11.2382' => 'acertr', 'Atru.chr12.2337' => 'acertr', 'Atru.chr3.744' => 'acertr', 'Atru.chr6.1870' => 'acertr', 'Atru.chr9.2515' => 'acertr', 'AUR62004120' => 'cqu', 'AUR62005667' => 'cqu', 'AUR62007634' => 'cqu', 'AUR62008186' => 'cqu', 'AUR62008187' => 'cqu', 'AUR62008188' => 'cqu', 'AUR62027954' => 'cqu', 'AUR62028766' => 'cqu', 'AUR62028767' => 'cqu', 'AUR62028768' => 'cqu', 'AUR62028886' => 'cqu', 'AUR62029563' => 'cqu', 'AUR62038832' => 'cqu', 'BcaB01g04149' => 'bca', 'BcaB03g12940' => 'bca', 'BcaB03g13090' => 'bca', 'BcaB03g14466' => 'bca', 'BcaB05g24035' => 'bca', 'BcaC01g06050' => 'bca', 'BcaC04g19148' => 'bca', 'BcaC04g20761' => 'bca', 'BcaC06g32845' => 'bca', 'BcaC07g41274' => 'bca', 'BcaC09g50827' => 'bca', 'BcaNung00741' => 'bca', 'BcaNung00742' => 'bca', 'BcaNung01859' => 'bca', 'BcaNung03985' => 'bca', 'BcaNung03989' => 'bca', 'BcaNung05661' => 'bca', 'BolC1t00257H' => 'bol', 'BolC1t01956H' => 'bol', 'BolC2t06534H' => 'bol', 'BolC3t14334H' => 'bol', 'BolC5t30451H' => 'bol', 'BolC7t45880H' => 'bol', 'BolC7t46586H' => 'bol', 'BolC8t49301H' => 'bol', 'BolC8t51837H' => 'bol', 'BolC9t56822H' => 'bol', 'BolC9t59235H' => 'bol', 'BraA01t00234Z' => 'bra', 'BraA01t01563Z' => 'bra', 'BraA02t05147Z' => 'bra', 'BraA03t10947Z' => 'bra', 'BraA03t14633Z' => 'bra', 'BraA08t35112Z' => 'bra', 'BraA09t41330Z' => 'bra', 'BraA10t44570Z' => 'bra', 'C01p02670' => 'bna', 'C01p20260' => 'bna', 'C02p05890' => 'bna', 'C03p19530' => 'bna', 'C05p17470' => 'bna', 'C07p53900' => 'bna', 'C07p61630' => 'bna', 'C08p16800' => 'bna', 'C08p42810' => 'bna', 'C09p39480' => 'bna', 'C09p63980' => 'bna', 'CAN.G1001.7' => 'can', 'CAN.G1034.55' => 'can', 'CAN.G143.7' => 'can', 'CAN.G3340.1' => 'can', 'CAN.G358.19' => 'can', 'CAN.G373.2' => 'can', 'CAN.G674.16' => 'can', 'CAN.G674.17' => 'can', 'CAN.G674.18' => 'can', 'CAN.G732.2' => 'can', 'CAN.G732.3' => 'can', 'CAN.G993.39' => 'can', 'CANSAT01G2052' => 'cansat', 'CANSAT80G0070' => 'cansat', 'CANSAT80G0483' => 'cansat', 'CANSAT80G0625' => 'cansat', 'CARHR019690' => 'chi', 'CARHR080280' => 'chi', 'CARHR152750' => 'chi', 'CARHR152760' => 'chi', 'CARHR152770' => 'chi', 'CARHR200340' => 'chi', 'CARHR232370' => 'chi', 'CARHR244670' => 'chi', 'CARHR244680' => 'chi', 'CARHR257520' => 'chi', 'Carub.0001s1872' => 'cru', 'Carub.0006s1130' => 'cru', 'Carub.0007s0396' => 'cru', 'Carub.0007s0397' => 'cru', 'Carub.0007s1608' => 'cru', 'Carub.0008s1068' => 'cru', 'Carub.0008s1077' => 'cru', 'Ca_16158_v3' => 'car', 'Ca_17571_v3' => 'car', 'Ca_21936_v3' => 'car', 'Ca_22350_v3' => 'car', 'CBR_g22445' => 'cbr', 'CBR_g26290' => 'cbr', 'Cc04_g09610' => 'ccan', 'Cc04_g12280' => 'ccan', 'Cc07_g10230' => 'ccan', 'CDE02G0093' => 'cde', 'CDE02G0701' => 'cde', 'CDE04G1050' => 'cde', 'CDE05G1833' => 'cde', 'CDE05G3058' => 'cde', 'CDE05G3380' => 'cde', 'CDE06G0536' => 'cde', 'Cfa006923' => 'cfa', 'Cfa009402' => 'cfa', 'Cfa018751' => 'cfa', 'Cfa019164' => 'cfa', 'Cfa022935' => 'cfa', 'Ciclev10019081m.g' => 'ccl', 'Ciclev10025076m.g' => 'ccl', 'Ciclev10030712m.g' => 'ccl', 'Ciclev10033760m.g' => 'ccl', 'CiPaw.05G105600' => 'cil', 'CiPaw.08G136700' => 'cil', 'CiPaw.11G003900' => 'cil', 'CiPaw.11G023700' => 'cil', 'CiPaw.12G003700' => 'cil', 'ClCG06G017100' => 'cla', 'ClCG06G018110' => 'cla', 'ClCG07G008800' => 'cla', 'ClCG07G015330' => 'cla', 'COL.COLO4_13698' => 'col', 'COL.COLO4_16659' => 'col', 'COL.COLO4_21986' => 'col', 'COL.COLO4_24049' => 'col', 'COL.COLO4_29061' => 'col', 'COL.COLO4_29075' => 'col', 'COL.COLO4_30094' => 'col', 'Cpa.g.c33689' => 'cpa', 'Cpa.g.sc108.39' => 'cpa', 'Cpa.g.sc108.41' => 'cpa', 'Cpa.g.sc1163.1' => 'cpa', 'Cpa.g.sc4.155' => 'cpa', 'Cpa.g.sc6.194' => 'cpa', 'CsaV3_1G000340' => 'csa', 'CsaV3_1G001400' => 'csa', 'CsaV3_4G002220' => 'csa', 'CsaV3_4G005370' => 'csa', 'CSS0007487' => 'camsi', 'CSS0008066' => 'camsi', 'CSS0009120' => 'camsi', 'CSS0015512' => 'camsi', 'CSS0022409' => 'camsi', 'CSS0025358' => 'camsi', 'CSS0044547' => 'camsi', 'DCAR_013057' => 'dca', 'DCAR_015058' => 'dca', 'DCAR_016027' => 'dca', 'DCAR_017327' => 'dca', 'DCAR_020743' => 'dca', 'DCAR_026157' => 'dca', 'DCAR_032339' => 'dca', 'DCAR_032340' => 'dca', 'Dinv11200' => 'din', 'Dinv11201' => 'din', 'Dinv20631' => 'din', 'Dinv23182' => 'din', 'Dinv33466' => 'din', 'Dinv33583' => 'din', 'Dinv38565' => 'din', 'Duzib068G0200' => 'dzi', 'Duzib147G0132' => 'dzi', 'Duzib147G0635' => 'dzi', 'Duzib205G1670' => 'dzi', 'Duzib251G0606' => 'dzi', 'ECA232G3336' => 'eca', 'ECA232G3763' => 'eca', 'ECA232G4845' => 'eca', 'ECA234G1607' => 'eca', 'ECA246G0932' => 'eca', 'ECA247G0781' => 'eca', 'ECA247G1932' => 'eca', 'ECA247G2079' => 'eca', 'ECA247G3338' => 'eca', 'ECA247G4115' => 'eca', 'EL10Ac3g06552' => 'bvu', 'EL10Ac5g10721' => 'bvu', 'EL10Ac5g10722' => 'bvu', 'EL10Ac5g10723' => 'bvu', 'EL10Ac5g11361' => 'bvu', 'EL10Ac6g13553' => 'bvu', 'EL10As8g23872' => 'bvu', 'Eucgr.B00250' => 'egr', 'Eucgr.B00251' => 'egr', 'Eucgr.B03533' => 'egr', 'Eucgr.I02381' => 'egr', 'Eucgr.K02700' => 'egr', 'FAN02G0174' => 'fan', 'FAN02G3146' => 'fan', 'FAN04G1672' => 'fan', 'FAN04G2273' => 'fan', 'FAN05G2791' => 'fan', 'FAN05G4035' => 'fan', 'FAN07G0834' => 'fan', 'FAN08G1198' => 'fan', 'FAN09G4182' => 'fan', 'FAN12G0496' => 'fan', 'FAN13G1027' => 'fan', 'FAN13G2951' => 'fan', 'FAN14G0705' => 'fan', 'FAN14G0720' => 'fan', 'FAN17G0201' => 'fan', 'FAN17G2665' => 'fan', 'FAN18G1456' => 'fan', 'FAN18G1525' => 'fan', 'FAN18G3500' => 'fan', 'FAN28G2670' => 'fan', 'FvH4_1g12391' => 'fve', 'FvH4_4g23220' => 'fve', 'FvH4_5g08810' => 'fve', 'FvH4_5g28960' => 'fve', 'FvH4_6g42820' => 'fve', 'FvH4_6g51110' => 'fve', 'Glyma.02G051802' => 'gma', 'Glyma.04G185300' => 'gma', 'Glyma.05G202900' => 'gma', 'Glyma.08G010300' => 'gma', 'Glyma.16G131900' => 'gma', 'Glyma.17G087900' => 'gma', 'Gohir.A07G048600' => 'ghi', 'Gohir.A11G179000' => 'ghi', 'Gohir.A12G140900' => 'ghi', 'Gohir.A12G140950' => 'ghi', 'Gohir.A12G191700' => 'ghi', 'Gohir.A13G086300' => 'ghi', 'Gohir.D07G052900' => 'ghi', 'Gohir.D11G186600' => 'ghi', 'Gohir.D12G145575' => 'ghi', 'Gohir.D12G145650' => 'ghi', 'Gohir.D12G145725' => 'ghi', 'Gohir.D12G194050' => 'ghi', 'Gohir.D13G091800' => 'ghi', 'Gorai.001G055900' => 'gra', 'Gorai.007G198400' => 'gra', 'Gorai.008G157000' => 'gra', 'Gorai.008G157100' => 'gra', 'Gorai.008G208700' => 'gra', 'Gorai.010G138700' => 'gra', 'GSVIVG01000977001' => 'vvi', 'GSVIVG01007708001' => 'vvi', 'GSVIVG01008587001' => 'vvi', 'GSVIVG01018849001' => 'vvi', 'GSVIVG01032432001' => 'vvi', 'HanXRQChr02g0034131' => 'han', 'HanXRQChr02g0035981' => 'han', 'HanXRQChr02g0035991' => 'han', 'HanXRQChr05g0155611' => 'han', 'HanXRQChr05g0155621' => 'han', 'HanXRQChr08g0236501' => 'han', 'HanXRQChr09g0261321' => 'han', 'HanXRQChr09g0272081' => 'han', 'HanXRQChr10g0310741' => 'han', 'HanXRQChr11g0325591' => 'han', 'HanXRQChr12g0385691' => 'han', 'HanXRQChr13g0387801' => 'han', 'HanXRQChr15g0463011' => 'han', 'Haze_03826' => 'cav', 'Haze_03827' => 'cav', 'Haze_07183' => 'cav', 'Haze_07537' => 'cav', 'Haze_07539' => 'cav', 'Haze_12461' => 'cav', 'Haze_16115' => 'cav', 'Haze_16808' => 'cav', 'Haze_18531' => 'cav', 'Hma1.2p1_0046F.1_g026700' => 'hma', 'Hma1.2p1_0046F.1_g026710' => 'hma', 'Hma1.2p1_0168F.1_g074340' => 'hma', 'Hma1.2p1_0266F.1_g107030' => 'hma', 'Hma1.2p1_0266F.1_g107060' => 'hma', 'Hma1.2p1_0275F.1_g110510' => 'hma', 'Hma1.2p1_0592F.1_g185490' => 'hma', 'Hma1.2p1_0592F.1_g185500' => 'hma', 'Hma1.2p1_0592F.1_g185510' => 'hma', 'Hma1.2p1_0592F.1_g185520' => 'hma', 'Hma1.2p1_0592F.1_g185530' => 'hma', 'Hma1.2p1_0818F.1_g223450' => 'hma', 'HPP92_009708' => 'vpl', 'HPP92_009793' => 'vpl', 'HPP92_009796' => 'vpl', 'HPP92_009797' => 'vpl', 'HPP92_014940' => 'vpl', 'HPP92_014988' => 'vpl', 'Hund02463' => 'sun', 'Hund02760' => 'sun', 'Hund05071' => 'sun', 'Hund10108' => 'sun', 'Hund11204' => 'sun', 'Hund14016' => 'sun', 'Hund16464' => 'sun', 'Lalb_Chr09g0333391' => 'lal', 'Lalb_Chr11g0070461' => 'lal', 'Lalb_Chr12g0201671' => 'lal', 'Lalb_Chr13g0297161' => 'lal', 'Lj1g0002823' => 'lja', 'Lj3C1074T6' => 'lonja', 'Lj4A212T28' => 'lonja', 'Lj4g0005516' => 'lja', 'Lj4g0013705' => 'lja', 'Lj4g0027865' => 'lja', 'Lj5C92G16' => 'lonja', 'Lj5C92T12' => 'lonja', 'Lj7C596T3' => 'lonja', 'Lj9A446G59' => 'lonja', 'Lj9A482G21' => 'lonja', 'Lsat_1_v5_gn_1_28261' => 'lsa', 'Lsat_1_v5_gn_1_28281' => 'lsa', 'Lsat_1_v5_gn_1_32721' => 'lsa', 'Lsat_1_v5_gn_4_151760' => 'lsa', 'Lsat_1_v5_gn_4_2120' => 'lsa', 'Lsat_1_v5_gn_4_75761' => 'lsa', 'Lsat_1_v5_gn_5_10920' => 'lsa', 'Manes.02G099900' => 'mes', 'Manes.11G096200' => 'mes', 'Manes.12G007200' => 'mes', 'Manes.14G048300' => 'mes', 'Manes.17G114700' => 'mes', 'Mapoly0002s0070' => 'mpo', 'Mapoly0029s0099' => 'mpo', 'MBI07_g24742_MAGBIO' => 'mbi', 'MBI10_g27988_MAGBIO' => 'mbi', 'MBI11_g13057_MAGBIO' => 'mbi', 'MD02G1137200' => 'mdo', 'MD06G1137200' => 'mdo', 'MD07G1122300' => 'mdo', 'MD09G1078200' => 'mdo', 'MD13G1123700' => 'mdo', 'MD14G1151900' => 'mdo', 'MD17G1030900' => 'mdo', 'MD17G1068200' => 'mdo', 'MD17G1068600' => 'mdo', 'Medtr3g077540' => 'mtr', 'Medtr4g105530' => 'mtr', 'Medtr8g076580' => 'mtr', 'Medtr8g076590' => 'mtr', 'Medtr8g096410' => 'mtr', 'MELO3C016411.2' => 'cme', 'MELO3C017780.2' => 'cme', 'MELO3C022560.2' => 'cme', 'MELO3C026187.2' => 'cme', 'MELO3C026286.2' => 'cme', 'MELO3C032854.2' => 'cme', 'Migut.H02495' => 'egut', 'Migut.I00561' => 'egut', 'Migut.K01015' => 'egut', 'Migut.K01016' => 'egut', 'Migut.L00743' => 'egut', 'Migut.L00744' => 'egut', 'Migut.L00746' => 'egut', 'Migut.L00798' => 'egut', 'Migut.L00799' => 'egut', 'Migut.N02096' => 'egut', 'MSTRG.11259' => 'ama', 'MSTRG.23142' => 'ama', 'MSTRG.2499' => 'ama', 'Nitab4.5_0000003g0730' => 'nta', 'Nitab4.5_0000137g0020' => 'nta', 'Nitab4.5_0000721g0210' => 'nta', 'Nitab4.5_0000723g0050' => 'nta', 'Nitab4.5_0000913g0070' => 'nta', 'Nitab4.5_0001332g0040' => 'nta', 'Nitab4.5_0001771g0050' => 'nta', 'Nitab4.5_0001918g0050' => 'nta', 'Nitab4.5_0002686g0030' => 'nta', 'Nitab4.5_0003156g0020' => 'nta', 'Nitab4.5_0003383g0040' => 'nta', 'Nitab4.5_0003918g0010' => 'nta', 'Nitab4.5_0006760g0010' => 'nta', 'Nn1g05981' => 'nnu', 'Nn1g06288' => 'nnu', 'Nn3g16371' => 'nnu', 'Nn3g16786' => 'nnu', 'Nn4g22232' => 'nnu', 'Oeu005144.1' => 'oeu', 'Oeu005145.1' => 'oeu', 'Oeu011348.1' => 'oeu', 'Oeu016415.1' => 'oeu', 'Oeu023501.1' => 'oeu', 'Oeu044473.1' => 'oeu', 'Oeu048892.2' => 'oeu', 'Os01g0549200' => 'osa', 'Os02g0469300' => 'osa', 'Os04g0311100' => 'osa', 'Os06g0474900' => 'osa', 'Os10g0181700' => 'osa', 'Os11g0454800' => 'osa', 'Peaxi162Scf00037g00714' => 'pax', 'Peaxi162Scf00084g01217' => 'pax', 'Peaxi162Scf00257g00217' => 'pax', 'Peaxi162Scf00516g00215' => 'pax', 'Peaxi162Scf00689g00123' => 'pax', 'PGR044G2719' => 'pgr', 'PGR083G1360' => 'pgr', 'PGR102G2849' => 'pgr', 'PGR119G2534' => 'pgr', 'PGSC0003DMG400003538' => 'stu', 'PGSC0003DMG400028138' => 'stu', 'PGSC0003DMG400031732' => 'stu', 'PGSC0003DMG400038165' => 'stu', 'Phvul.002G284600' => 'pvu', 'Phvul.003G258200' => 'pvu', 'Phvul.009G176500' => 'pvu', 'Potri.003G167201' => 'ptr', 'Potri.005G118400' => 'ptr', 'Potri.012G089000' => 'ptr', 'Potri.012G102800' => 'ptr', 'Potri.015G079400' => 'ptr', 'Potri.015G100900' => 'ptr', 'Pp3c14_9810' => 'ppa', 'Pp3c15_10450' => 'ppa', 'Pp3c20_19150' => 'ppa', 'Pp3c23_12740' => 'ppa', 'Pp3c23_6310' => 'ppa', 'Pp3c24_3720' => 'ppa', 'Pp3c27_2580' => 'ppa', 'Pp3c9_8990' => 'ppa', 'PRCOL_00002854' => 'pco', 'Prupe.1G221200' => 'ppe', 'Prupe.3G289000' => 'ppe', 'Prupe.5G147000' => 'ppe', 'Prupe.6G157300' => 'ppe', 'Prupe.7G163400' => 'ppe', 'Psat0s2177g0040' => 'psa', 'Psat3g174760' => 'psa', 'Psat3g192160' => 'psa', 'Psat4g058520' => 'psa', 'Psat4g096840' => 'psa', 'Psat7g037320' => 'psa', 'PSO017G1274' => 'pso', 'PSO017G5166' => 'pso', 'PSO063G4558' => 'pso', 'PSO170G4458' => 'pso', 'PSO170G5005' => 'pso', 'PSO210G6156' => 'pso', 'PSO210G6635' => 'pso', 'PSO210G7397' => 'pso', 'PSO210G7700' => 'pso', 'PSO455G0035' => 'pso', 'PSO455G0180' => 'pso', 'PSO478G4515' => 'pso', 'PSO832G1305' => 'pso', 'PSO832G3489' => 'pso', 'QL02p075247' => 'qlo', 'QL03p051148' => 'qlo', 'QL05p010313' => 'qlo', 'QL06p034627' => 'qlo', 'QL10p001889' => 'qlo', 'QL10p010846' => 'qlo', 'RcHm_v2.0_Chr1g0350621' => 'rch', 'RcHm_v2.0_Chr1g0350641' => 'rch', 'RcHm_v2.0_Chr2g0092891' => 'rch', 'RcHm_v2.0_Chr2g0100251' => 'rch', 'RcHm_v2.0_Chr2g0158661' => 'rch', 'RcHm_v2.0_Chr2g0172741' => 'rch', 'RcHm_v2.0_Chr4g0429571' => 'rch', 'RcHm_v2.0_Chr5g0042471' => 'rch', 'RcHm_v2.0_Chr7g0189451' => 'rch', 'Rhsim08G0052000' => 'rsi', 'Rhsim08G0174400' => 'rsi', 'Rhsim08G0193200' => 'rsi', 'Rhsim10G0214800' => 'rsi', 'Rhsim10G0214900' => 'rsi', 'Rhsim10G0215000' => 'rsi', 'Rhsim12G0022900' => 'rsi', 'Rhsim12G0177500' => 'rsi', 'Rhsim12G0177700' => 'rsi', 'Sabra03G0122600' => 'sbr', 'Sabra05G0097400' => 'sbr', 'Sabra12G0064100' => 'sbr', 'Sabra15G0121300' => 'sbr', 'SalBow2G0642' => 'sbo', 'SalBow5G2667' => 'sbo', 'SalBow5G4873' => 'sbo', 'SalBow8G2395' => 'sbo', 'Sc03g0003290' => 'sci', 'Sc10g0010130' => 'sci', 'Sc22g0003650' => 'sci', 'Sed0001603' => 'sed', 'Sed0004259' => 'sed', 'Sed0006789' => 'sed', 'Sed0011838' => 'sed', 'Sed0012964' => 'sed', 'Sed0016383' => 'sed', 'Sed0019010' => 'sed', 'Sed0020188' => 'sed', 'SEGI_04702' => 'sgi', 'SEGI_17231' => 'sgi', 'SEGI_18877' => 'sgi', 'SEGI_25196' => 'sgi', 'SEGI_25515' => 'sgi', 'SEGI_28445' => 'sgi', 'SEGI_37452' => 'sgi', 'SGA_v2.0_scaffold188G40336' => 'sas', 'SGA_v2.0_scaffold228G43247' => 'sas', 'SGA_v2.0_scaffold280G46853' => 'sas', 'SGA_v2.0_scaffold34G13808' => 'sas', 'SGA_v2.0_scaffold40G15576' => 'sas', 'SGA_v2.0_scaffold611G53188' => 'sas', 'SGA_v2.0_scaffold78G25461' => 'sas', 'SGA_v2.0_scaffold90G27888' => 'sas', 'SHI08601' => 'shi', 'SHI08606' => 'shi', 'SHI17117' => 'shi', 'SHI17119' => 'shi', 'SMO118G0201' => 'smo', 'SMO169G0247' => 'smo', 'SMO176G0006' => 'smo', 'SMO176G0015' => 'smo', 'SMO202G0006' => 'smo', 'SMO240G0050' => 'smo', 'SMO286G0009' => 'smo', 'SMO338G0033' => 'smo', 'SMO356G0533' => 'smo', 'SMO364G0382' => 'smo', 'SMO367G0166' => 'smo', 'SMO367G1098' => 'smo', 'Solyc01g009920.3' => 'sly', 'Solyc01g099300.3' => 'sly', 'Solyc02g084700.3' => 'sly', 'Solyc03g097520.3' => 'sly', 'Solyc06g071580.3' => 'sly', 'Solyc10g081760.3' => 'sly', 'Sopen01g005480' => 'spe', 'Sopen01g042850' => 'spe', 'Sopen02g029370' => 'spe', 'Sopen03g028280' => 'spe', 'Sopen06g027870' => 'spe', 'Sopen10g032270' => 'spe', 'Sp5g18180' => 'spa', 'Sp6g12880' => 'spa', 'Sp6g30850' => 'spa', 'Sp7g22960' => 'spa', 'Sp7g34010' => 'spa', 'SpUn1326_0010' => 'spa', 'TAR371G0242' => 'tar', 'TAR622G0638' => 'tar', 'TAR628G1548' => 'tar', 'TAR629G1079' => 'tar', 'TAR629G3413' => 'tar', 'THA.LOC104804249' => 'tha', 'THA.LOC104808315' => 'tha', 'THA.LOC104809238' => 'tha', 'THA.LOC104825484' => 'tha', 'Thecc.01G025500' => 'tca', 'Thecc.03G015800' => 'tca', 'Thecc.03G018000' => 'tca', 'Thecc.03G134800' => 'tca', 'Thecc.04G014700' => 'tca', 'Thhalv10006991m.g' => 'esa', 'Thhalv10012707m.g' => 'esa', 'Thhalv10015739m.g' => 'esa', 'Thhalv10024553m.g' => 'esa', 'Thhalv10024673m.g' => 'esa', 'Thhalv10029187m.g' => 'esa', 'TPR.G12971' => 'tpr', 'TPR.G29396' => 'tpr', 'TPR.G33376' => 'tpr', 'TPR.G35508' => 'tpr', 'TPR.G35516' => 'tpr', 'TPR.G37317' => 'tpr', 'TPR.G37389' => 'tpr', 'TPR.G37523' => 'tpr', 'TPR.G559' => 'tpr', 'TWI14G0070' => 'twi', 'TWI14G0729' => 'twi', 'TWI18G0596' => 'twi', 'TWI39G0780' => 'twi', 'TWI39G0850' => 'twi', 'TWI73G1052' => 'twi', 'unitig_52.g17485' => 'ugi', 'unitig_61.g26355' => 'ugi', 'vmacro01040' => 'vma', 'vmacro16731' => 'vma', 'vmacro18270' => 'vma', 'vmacro19142' => 'vma', 'vmacro19407' => 'vma', 'vmacro19408' => 'vma', 'vmacro21899' => 'vma', 'vmacro21900' => 'vma', 'vmacro21901' => 'vma', 'VMungo0251G0490' => 'vmu', 'VMungo0251G1748' => 'vmu', 'VMungo1309G0421' => 'vmu', 'Zm00001eb086500' => 'zma', 'Zm00001eb150680' => 'zma', 'Zm00001eb162330' => 'zma', 'Zm00001eb203130' => 'zma', 'Zm00001eb369480' => 'zma', 'Zm00001eb382340' => 'zma', 'Zm00001eb416360' => 'zma' ), 'gf_id' => 'HOM05D000902', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000902' ), 'data_identifier' => 'HOM05D000902', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000902', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '663', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02470' => 'bna', 'A01p16260' => 'bna', 'A02p01680' => 'bna', 'A03p16600' => 'bna', 'A03p55660' => 'bna', 'A03p64160' => 'bna', 'A03p64170' => 'bna', 'A08p31900' => 'bna', 'A09p59530' => 'bna', 'A10p08230' => 'bna', 'A10p25090' => 'bna', 'Aa31LG3G7100' => 'aar', 'Aa31LG3G7110' => 'aar', 'Aa31LG6G13160' => 'aar', 'Aa31LG7G10770' => 'aar', 'Aa31LG7G3830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2723' => 'aag', 'Actinidia08045' => 'ach', 'Actinidia08888' => 'ach', 'Actinidia18333' => 'ach', 'Actinidia19334' => 'ach', 'Actinidia25552' => 'ach', 'Actinidia26089' => 'ach', 'Actinidia30615' => 'ach', 'Actinidia30616' => 'ach', 'Actinidia33083' => 'ach', 'Actinidia35762' => 'ach', 'Ah.02g110620' => 'amhyb', 'Ah.11g046390' => 'amhyb', 'AL1G31670' => 'aly', 'AL6G23730' => 'aly', 'AL7G14740' => 'aly', 'AL7G14750' => 'aly', 'AL7G14760' => 'aly', 'AL7G28220' => 'aly', 'AL8G24940' => 'aly', 'Aqoxy3G01665' => 'aox', 'Aqoxy3G02853' => 'aox', 'Aqoxy5G01513' => 'aox', 'Aqoxy5G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8SKA4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ75LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKDA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0LJZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7REX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZP4YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWX7I5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2QKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS0L9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPCD8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q161UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC7XCF' => 'arhy', 'AT1G19100' => 'ath', 'AT4G24970' => 'ath', 'AT4G36270' => 'ath', 'AT4G36280' => 'ath', 'AT4G36290' => 'ath', 'AT5G13130' => 'ath', 'AT5G50780' => 'ath', 'ATR0582G266' => 'atr', 'ATR0661G195' => 'atr', 'ATR1152G031' => 'atr', 'Atru.chr11.2382' => 'acertr', 'Atru.chr12.2337' => 'acertr', 'Atru.chr3.744' => 'acertr', 'Atru.chr6.1870' => 'acertr', 'Atru.chr9.2515' => 'acertr', 'AUR62004120' => 'cqu', 'AUR62005667' => 'cqu', 'AUR62007634' => 'cqu', 'AUR62008186' => 'cqu', 'AUR62008187' => 'cqu', 'AUR62008188' => 'cqu', 'AUR62027954' => 'cqu', 'AUR62028766' => 'cqu', 'AUR62028767' => 'cqu', 'AUR62028768' => 'cqu', 'AUR62028886' => 'cqu', 'AUR62029563' => 'cqu', 'AUR62038832' => 'cqu', 'BcaB01g04149' => 'bca', 'BcaB03g12940' => 'bca', 'BcaB03g13090' => 'bca', 'BcaB03g14466' => 'bca', 'BcaB05g24035' => 'bca', 'BcaC01g06050' => 'bca', 'BcaC04g19148' => 'bca', 'BcaC04g20761' => 'bca', 'BcaC06g32845' => 'bca', 'BcaC07g41274' => 'bca', 'BcaC09g50827' => 'bca', 'BcaNung00741' => 'bca', 'BcaNung00742' => 'bca', 'BcaNung01859' => 'bca', 'BcaNung03985' => 'bca', 'BcaNung03989' => 'bca', 'BcaNung05661' => 'bca', 'BolC1t00257H' => 'bol', 'BolC1t01956H' => 'bol', 'BolC2t06534H' => 'bol', 'BolC3t14334H' => 'bol', 'BolC5t30451H' => 'bol', 'BolC7t45880H' => 'bol', 'BolC7t46586H' => 'bol', 'BolC8t49301H' => 'bol', 'BolC8t51837H' => 'bol', 'BolC9t56822H' => 'bol', 'BolC9t59235H' => 'bol', 'BraA01t00234Z' => 'bra', 'BraA01t01563Z' => 'bra', 'BraA02t05147Z' => 'bra', 'BraA03t10947Z' => 'bra', 'BraA03t14633Z' => 'bra', 'BraA08t35112Z' => 'bra', 'BraA09t41330Z' => 'bra', 'BraA10t44570Z' => 'bra', 'C01p02670' => 'bna', 'C01p20260' => 'bna', 'C02p05890' => 'bna', 'C03p19530' => 'bna', 'C05p17470' => 'bna', 'C07p53900' => 'bna', 'C07p61630' => 'bna', 'C08p16800' => 'bna', 'C08p42810' => 'bna', 'C09p39480' => 'bna', 'C09p63980' => 'bna', 'CAN.G1001.7' => 'can', 'CAN.G1034.55' => 'can', 'CAN.G143.7' => 'can', 'CAN.G3340.1' => 'can', 'CAN.G358.19' => 'can', 'CAN.G373.2' => 'can', 'CAN.G674.16' => 'can', 'CAN.G674.17' => 'can', 'CAN.G674.18' => 'can', 'CAN.G732.2' => 'can', 'CAN.G732.3' => 'can', 'CAN.G993.39' => 'can', 'CANSAT01G2052' => 'cansat', 'CANSAT80G0070' => 'cansat', 'CANSAT80G0483' => 'cansat', 'CANSAT80G0625' => 'cansat', 'CARHR019690' => 'chi', 'CARHR080280' => 'chi', 'CARHR152750' => 'chi', 'CARHR152760' => 'chi', 'CARHR152770' => 'chi', 'CARHR200340' => 'chi', 'CARHR232370' => 'chi', 'CARHR244670' => 'chi', 'CARHR244680' => 'chi', 'CARHR257520' => 'chi', 'Carub.0001s1872' => 'cru', 'Carub.0006s1130' => 'cru', 'Carub.0007s0396' => 'cru', 'Carub.0007s0397' => 'cru', 'Carub.0007s1608' => 'cru', 'Carub.0008s1068' => 'cru', 'Carub.0008s1077' => 'cru', 'Ca_16158_v3' => 'car', 'Ca_17571_v3' => 'car', 'Ca_21936_v3' => 'car', 'Ca_22350_v3' => 'car', 'CBR_g22445' => 'cbr', 'CBR_g26290' => 'cbr', 'Cc04_g09610' => 'ccan', 'Cc04_g12280' => 'ccan', 'Cc07_g10230' => 'ccan', 'CDE02G0093' => 'cde', 'CDE02G0701' => 'cde', 'CDE04G1050' => 'cde', 'CDE05G1833' => 'cde', 'CDE05G3058' => 'cde', 'CDE05G3380' => 'cde', 'CDE06G0536' => 'cde', 'Cfa006923' => 'cfa', 'Cfa009402' => 'cfa', 'Cfa018751' => 'cfa', 'Cfa019164' => 'cfa', 'Cfa022935' => 'cfa', 'Ciclev10019081m.g' => 'ccl', 'Ciclev10025076m.g' => 'ccl', 'Ciclev10030712m.g' => 'ccl', 'Ciclev10033760m.g' => 'ccl', 'CiPaw.05G105600' => 'cil', 'CiPaw.08G136700' => 'cil', 'CiPaw.11G003900' => 'cil', 'CiPaw.11G023700' => 'cil', 'CiPaw.12G003700' => 'cil', 'ClCG06G017100' => 'cla', 'ClCG06G018110' => 'cla', 'ClCG07G008800' => 'cla', 'ClCG07G015330' => 'cla', 'COL.COLO4_13698' => 'col', 'COL.COLO4_16659' => 'col', 'COL.COLO4_21986' => 'col', 'COL.COLO4_24049' => 'col', 'COL.COLO4_29061' => 'col', 'COL.COLO4_29075' => 'col', 'COL.COLO4_30094' => 'col', 'Cpa.g.c33689' => 'cpa', 'Cpa.g.sc108.39' => 'cpa', 'Cpa.g.sc108.41' => 'cpa', 'Cpa.g.sc1163.1' => 'cpa', 'Cpa.g.sc4.155' => 'cpa', 'Cpa.g.sc6.194' => 'cpa', 'CsaV3_1G000340' => 'csa', 'CsaV3_1G001400' => 'csa', 'CsaV3_4G002220' => 'csa', 'CsaV3_4G005370' => 'csa', 'CSS0007487' => 'camsi', 'CSS0008066' => 'camsi', 'CSS0009120' => 'camsi', 'CSS0015512' => 'camsi', 'CSS0022409' => 'camsi', 'CSS0025358' => 'camsi', 'CSS0044547' => 'camsi', 'DCAR_013057' => 'dca', 'DCAR_015058' => 'dca', 'DCAR_016027' => 'dca', 'DCAR_017327' => 'dca', 'DCAR_020743' => 'dca', 'DCAR_026157' => 'dca', 'DCAR_032339' => 'dca', 'DCAR_032340' => 'dca', 'Dinv11200' => 'din', 'Dinv11201' => 'din', 'Dinv20631' => 'din', 'Dinv23182' => 'din', 'Dinv33466' => 'din', 'Dinv33583' => 'din', 'Dinv38565' => 'din', 'Duzib068G0200' => 'dzi', 'Duzib147G0132' => 'dzi', 'Duzib147G0635' => 'dzi', 'Duzib205G1670' => 'dzi', 'Duzib251G0606' => 'dzi', 'ECA232G3336' => 'eca', 'ECA232G3763' => 'eca', 'ECA232G4845' => 'eca', 'ECA234G1607' => 'eca', 'ECA246G0932' => 'eca', 'ECA247G0781' => 'eca', 'ECA247G1932' => 'eca', 'ECA247G2079' => 'eca', 'ECA247G3338' => 'eca', 'ECA247G4115' => 'eca', 'EL10Ac3g06552' => 'bvu', 'EL10Ac5g10721' => 'bvu', 'EL10Ac5g10722' => 'bvu', 'EL10Ac5g10723' => 'bvu', 'EL10Ac5g11361' => 'bvu', 'EL10Ac6g13553' => 'bvu', 'EL10As8g23872' => 'bvu', 'Eucgr.B00250' => 'egr', 'Eucgr.B00251' => 'egr', 'Eucgr.B03533' => 'egr', 'Eucgr.I02381' => 'egr', 'Eucgr.K02700' => 'egr', 'FAN02G0174' => 'fan', 'FAN02G3146' => 'fan', 'FAN04G1672' => 'fan', 'FAN04G2273' => 'fan', 'FAN05G2791' => 'fan', 'FAN05G4035' => 'fan', 'FAN07G0834' => 'fan', 'FAN08G1198' => 'fan', 'FAN09G4182' => 'fan', 'FAN12G0496' => 'fan', 'FAN13G1027' => 'fan', 'FAN13G2951' => 'fan', 'FAN14G0705' => 'fan', 'FAN14G0720' => 'fan', 'FAN17G0201' => 'fan', 'FAN17G2665' => 'fan', 'FAN18G1456' => 'fan', 'FAN18G1525' => 'fan', 'FAN18G3500' => 'fan', 'FAN28G2670' => 'fan', 'FvH4_1g12391' => 'fve', 'FvH4_4g23220' => 'fve', 'FvH4_5g08810' => 'fve', 'FvH4_5g28960' => 'fve', 'FvH4_6g42820' => 'fve', 'FvH4_6g51110' => 'fve', 'Glyma.02G051802' => 'gma', 'Glyma.04G185300' => 'gma', 'Glyma.05G202900' => 'gma', 'Glyma.08G010300' => 'gma', 'Glyma.16G131900' => 'gma', 'Glyma.17G087900' => 'gma', 'Gohir.A07G048600' => 'ghi', 'Gohir.A11G179000' => 'ghi', 'Gohir.A12G140900' => 'ghi', 'Gohir.A12G140950' => 'ghi', 'Gohir.A12G191700' => 'ghi', 'Gohir.A13G086300' => 'ghi', 'Gohir.D07G052900' => 'ghi', 'Gohir.D11G186600' => 'ghi', 'Gohir.D12G145575' => 'ghi', 'Gohir.D12G145650' => 'ghi', 'Gohir.D12G145725' => 'ghi', 'Gohir.D12G194050' => 'ghi', 'Gohir.D13G091800' => 'ghi', 'Gorai.001G055900' => 'gra', 'Gorai.007G198400' => 'gra', 'Gorai.008G157000' => 'gra', 'Gorai.008G157100' => 'gra', 'Gorai.008G208700' => 'gra', 'Gorai.010G138700' => 'gra', 'GSVIVG01000977001' => 'vvi', 'GSVIVG01007708001' => 'vvi', 'GSVIVG01008587001' => 'vvi', 'GSVIVG01018849001' => 'vvi', 'GSVIVG01032432001' => 'vvi', 'HanXRQChr02g0034131' => 'han', 'HanXRQChr02g0035981' => 'han', 'HanXRQChr02g0035991' => 'han', 'HanXRQChr05g0155611' => 'han', 'HanXRQChr05g0155621' => 'han', 'HanXRQChr08g0236501' => 'han', 'HanXRQChr09g0261321' => 'han', 'HanXRQChr09g0272081' => 'han', 'HanXRQChr10g0310741' => 'han', 'HanXRQChr11g0325591' => 'han', 'HanXRQChr12g0385691' => 'han', 'HanXRQChr13g0387801' => 'han', 'HanXRQChr15g0463011' => 'han', 'Haze_03826' => 'cav', 'Haze_03827' => 'cav', 'Haze_07183' => 'cav', 'Haze_07537' => 'cav', 'Haze_07539' => 'cav', 'Haze_12461' => 'cav', 'Haze_16115' => 'cav', 'Haze_16808' => 'cav', 'Haze_18531' => 'cav', 'Hma1.2p1_0046F.1_g026700' => 'hma', 'Hma1.2p1_0046F.1_g026710' => 'hma', 'Hma1.2p1_0168F.1_g074340' => 'hma', 'Hma1.2p1_0266F.1_g107030' => 'hma', 'Hma1.2p1_0266F.1_g107060' => 'hma', 'Hma1.2p1_0275F.1_g110510' => 'hma', 'Hma1.2p1_0592F.1_g185490' => 'hma', 'Hma1.2p1_0592F.1_g185500' => 'hma', 'Hma1.2p1_0592F.1_g185510' => 'hma', 'Hma1.2p1_0592F.1_g185520' => 'hma', 'Hma1.2p1_0592F.1_g185530' => 'hma', 'Hma1.2p1_0818F.1_g223450' => 'hma', 'HPP92_009708' => 'vpl', 'HPP92_009793' => 'vpl', 'HPP92_009796' => 'vpl', 'HPP92_009797' => 'vpl', 'HPP92_014940' => 'vpl', 'HPP92_014988' => 'vpl', 'Hund02463' => 'sun', 'Hund02760' => 'sun', 'Hund05071' => 'sun', 'Hund10108' => 'sun', 'Hund11204' => 'sun', 'Hund14016' => 'sun', 'Hund16464' => 'sun', 'Lalb_Chr09g0333391' => 'lal', 'Lalb_Chr11g0070461' => 'lal', 'Lalb_Chr12g0201671' => 'lal', 'Lalb_Chr13g0297161' => 'lal', 'Lj1g0002823' => 'lja', 'Lj3C1074T6' => 'lonja', 'Lj4A212T28' => 'lonja', 'Lj4g0005516' => 'lja', 'Lj4g0013705' => 'lja', 'Lj4g0027865' => 'lja', 'Lj5C92G16' => 'lonja', 'Lj5C92T12' => 'lonja', 'Lj7C596T3' => 'lonja', 'Lj9A446G59' => 'lonja', 'Lj9A482G21' => 'lonja', 'Lsat_1_v5_gn_1_28261' => 'lsa', 'Lsat_1_v5_gn_1_28281' => 'lsa', 'Lsat_1_v5_gn_1_32721' => 'lsa', 'Lsat_1_v5_gn_4_151760' => 'lsa', 'Lsat_1_v5_gn_4_2120' => 'lsa', 'Lsat_1_v5_gn_4_75761' => 'lsa', 'Lsat_1_v5_gn_5_10920' => 'lsa', 'Manes.02G099900' => 'mes', 'Manes.11G096200' => 'mes', 'Manes.12G007200' => 'mes', 'Manes.14G048300' => 'mes', 'Manes.17G114700' => 'mes', 'Mapoly0002s0070' => 'mpo', 'Mapoly0029s0099' => 'mpo', 'MBI07_g24742_MAGBIO' => 'mbi', 'MBI10_g27988_MAGBIO' => 'mbi', 'MBI11_g13057_MAGBIO' => 'mbi', 'MD02G1137200' => 'mdo', 'MD06G1137200' => 'mdo', 'MD07G1122300' => 'mdo', 'MD09G1078200' => 'mdo', 'MD13G1123700' => 'mdo', 'MD14G1151900' => 'mdo', 'MD17G1030900' => 'mdo', 'MD17G1068200' => 'mdo', 'MD17G1068600' => 'mdo', 'Medtr3g077540' => 'mtr', 'Medtr4g105530' => 'mtr', 'Medtr8g076580' => 'mtr', 'Medtr8g076590' => 'mtr', 'Medtr8g096410' => 'mtr', 'MELO3C016411.2' => 'cme', 'MELO3C017780.2' => 'cme', 'MELO3C022560.2' => 'cme', 'MELO3C026187.2' => 'cme', 'MELO3C026286.2' => 'cme', 'MELO3C032854.2' => 'cme', 'Migut.H02495' => 'egut', 'Migut.I00561' => 'egut', 'Migut.K01015' => 'egut', 'Migut.K01016' => 'egut', 'Migut.L00743' => 'egut', 'Migut.L00744' => 'egut', 'Migut.L00746' => 'egut', 'Migut.L00798' => 'egut', 'Migut.L00799' => 'egut', 'Migut.N02096' => 'egut', 'MSTRG.11259' => 'ama', 'MSTRG.23142' => 'ama', 'MSTRG.2499' => 'ama', 'Nitab4.5_0000003g0730' => 'nta', 'Nitab4.5_0000137g0020' => 'nta', 'Nitab4.5_0000721g0210' => 'nta', 'Nitab4.5_0000723g0050' => 'nta', 'Nitab4.5_0000913g0070' => 'nta', 'Nitab4.5_0001332g0040' => 'nta', 'Nitab4.5_0001771g0050' => 'nta', 'Nitab4.5_0001918g0050' => 'nta', 'Nitab4.5_0002686g0030' => 'nta', 'Nitab4.5_0003156g0020' => 'nta', 'Nitab4.5_0003383g0040' => 'nta', 'Nitab4.5_0003918g0010' => 'nta', 'Nitab4.5_0006760g0010' => 'nta', 'Nn1g05981' => 'nnu', 'Nn1g06288' => 'nnu', 'Nn3g16371' => 'nnu', 'Nn3g16786' => 'nnu', 'Nn4g22232' => 'nnu', 'Oeu005144.1' => 'oeu', 'Oeu005145.1' => 'oeu', 'Oeu011348.1' => 'oeu', 'Oeu016415.1' => 'oeu', 'Oeu023501.1' => 'oeu', 'Oeu044473.1' => 'oeu', 'Oeu048892.2' => 'oeu', 'Os01g0549200' => 'osa', 'Os02g0469300' => 'osa', 'Os04g0311100' => 'osa', 'Os06g0474900' => 'osa', 'Os10g0181700' => 'osa', 'Os11g0454800' => 'osa', 'Peaxi162Scf00037g00714' => 'pax', 'Peaxi162Scf00084g01217' => 'pax', 'Peaxi162Scf00257g00217' => 'pax', 'Peaxi162Scf00516g00215' => 'pax', 'Peaxi162Scf00689g00123' => 'pax', 'PGR044G2719' => 'pgr', 'PGR083G1360' => 'pgr', 'PGR102G2849' => 'pgr', 'PGR119G2534' => 'pgr', 'PGSC0003DMG400003538' => 'stu', 'PGSC0003DMG400028138' => 'stu', 'PGSC0003DMG400031732' => 'stu', 'PGSC0003DMG400038165' => 'stu', 'Phvul.002G284600' => 'pvu', 'Phvul.003G258200' => 'pvu', 'Phvul.009G176500' => 'pvu', 'Potri.003G167201' => 'ptr', 'Potri.005G118400' => 'ptr', 'Potri.012G089000' => 'ptr', 'Potri.012G102800' => 'ptr', 'Potri.015G079400' => 'ptr', 'Potri.015G100900' => 'ptr', 'Pp3c14_9810' => 'ppa', 'Pp3c15_10450' => 'ppa', 'Pp3c20_19150' => 'ppa', 'Pp3c23_12740' => 'ppa', 'Pp3c23_6310' => 'ppa', 'Pp3c24_3720' => 'ppa', 'Pp3c27_2580' => 'ppa', 'Pp3c9_8990' => 'ppa', 'PRCOL_00002854' => 'pco', 'Prupe.1G221200' => 'ppe', 'Prupe.3G289000' => 'ppe', 'Prupe.5G147000' => 'ppe', 'Prupe.6G157300' => 'ppe', 'Prupe.7G163400' => 'ppe', 'Psat0s2177g0040' => 'psa', 'Psat3g174760' => 'psa', 'Psat3g192160' => 'psa', 'Psat4g058520' => 'psa', 'Psat4g096840' => 'psa', 'Psat7g037320' => 'psa', 'PSO017G1274' => 'pso', 'PSO017G5166' => 'pso', 'PSO063G4558' => 'pso', 'PSO170G4458' => 'pso', 'PSO170G5005' => 'pso', 'PSO210G6156' => 'pso', 'PSO210G6635' => 'pso', 'PSO210G7397' => 'pso', 'PSO210G7700' => 'pso', 'PSO455G0035' => 'pso', 'PSO455G0180' => 'pso', 'PSO478G4515' => 'pso', 'PSO832G1305' => 'pso', 'PSO832G3489' => 'pso', 'QL02p075247' => 'qlo', 'QL03p051148' => 'qlo', 'QL05p010313' => 'qlo', 'QL06p034627' => 'qlo', 'QL10p001889' => 'qlo', 'QL10p010846' => 'qlo', 'RcHm_v2.0_Chr1g0350621' => 'rch', 'RcHm_v2.0_Chr1g0350641' => 'rch', 'RcHm_v2.0_Chr2g0092891' => 'rch', 'RcHm_v2.0_Chr2g0100251' => 'rch', 'RcHm_v2.0_Chr2g0158661' => 'rch', 'RcHm_v2.0_Chr2g0172741' => 'rch', 'RcHm_v2.0_Chr4g0429571' => 'rch', 'RcHm_v2.0_Chr5g0042471' => 'rch', 'RcHm_v2.0_Chr7g0189451' => 'rch', 'Rhsim08G0052000' => 'rsi', 'Rhsim08G0174400' => 'rsi', 'Rhsim08G0193200' => 'rsi', 'Rhsim10G0214800' => 'rsi', 'Rhsim10G0214900' => 'rsi', 'Rhsim10G0215000' => 'rsi', 'Rhsim12G0022900' => 'rsi', 'Rhsim12G0177500' => 'rsi', 'Rhsim12G0177700' => 'rsi', 'Sabra03G0122600' => 'sbr', 'Sabra05G0097400' => 'sbr', 'Sabra12G0064100' => 'sbr', 'Sabra15G0121300' => 'sbr', 'SalBow2G0642' => 'sbo', 'SalBow5G2667' => 'sbo', 'SalBow5G4873' => 'sbo', 'SalBow8G2395' => 'sbo', 'Sc03g0003290' => 'sci', 'Sc10g0010130' => 'sci', 'Sc22g0003650' => 'sci', 'Sed0001603' => 'sed', 'Sed0004259' => 'sed', 'Sed0006789' => 'sed', 'Sed0011838' => 'sed', 'Sed0012964' => 'sed', 'Sed0016383' => 'sed', 'Sed0019010' => 'sed', 'Sed0020188' => 'sed', 'SEGI_04702' => 'sgi', 'SEGI_17231' => 'sgi', 'SEGI_18877' => 'sgi', 'SEGI_25196' => 'sgi', 'SEGI_25515' => 'sgi', 'SEGI_28445' => 'sgi', 'SEGI_37452' => 'sgi', 'SGA_v2.0_scaffold188G40336' => 'sas', 'SGA_v2.0_scaffold228G43247' => 'sas', 'SGA_v2.0_scaffold280G46853' => 'sas', 'SGA_v2.0_scaffold34G13808' => 'sas', 'SGA_v2.0_scaffold40G15576' => 'sas', 'SGA_v2.0_scaffold611G53188' => 'sas', 'SGA_v2.0_scaffold78G25461' => 'sas', 'SGA_v2.0_scaffold90G27888' => 'sas', 'SHI08601' => 'shi', 'SHI08606' => 'shi', 'SHI17117' => 'shi', 'SHI17119' => 'shi', 'SMO118G0201' => 'smo', 'SMO169G0247' => 'smo', 'SMO176G0006' => 'smo', 'SMO176G0015' => 'smo', 'SMO202G0006' => 'smo', 'SMO240G0050' => 'smo', 'SMO286G0009' => 'smo', 'SMO338G0033' => 'smo', 'SMO356G0533' => 'smo', 'SMO364G0382' => 'smo', 'SMO367G0166' => 'smo', 'SMO367G1098' => 'smo', 'Solyc01g009920.3' => 'sly', 'Solyc01g099300.3' => 'sly', 'Solyc02g084700.3' => 'sly', 'Solyc03g097520.3' => 'sly', 'Solyc06g071580.3' => 'sly', 'Solyc10g081760.3' => 'sly', 'Sopen01g005480' => 'spe', 'Sopen01g042850' => 'spe', 'Sopen02g029370' => 'spe', 'Sopen03g028280' => 'spe', 'Sopen06g027870' => 'spe', 'Sopen10g032270' => 'spe', 'Sp5g18180' => 'spa', 'Sp6g12880' => 'spa', 'Sp6g30850' => 'spa', 'Sp7g22960' => 'spa', 'Sp7g34010' => 'spa', 'SpUn1326_0010' => 'spa', 'TAR371G0242' => 'tar', 'TAR622G0638' => 'tar', 'TAR628G1548' => 'tar', 'TAR629G1079' => 'tar', 'TAR629G3413' => 'tar', 'THA.LOC104804249' => 'tha', 'THA.LOC104808315' => 'tha', 'THA.LOC104809238' => 'tha', 'THA.LOC104825484' => 'tha', 'Thecc.01G025500' => 'tca', 'Thecc.03G015800' => 'tca', 'Thecc.03G018000' => 'tca', 'Thecc.03G134800' => 'tca', 'Thecc.04G014700' => 'tca', 'Thhalv10006991m.g' => 'esa', 'Thhalv10012707m.g' => 'esa', 'Thhalv10015739m.g' => 'esa', 'Thhalv10024553m.g' => 'esa', 'Thhalv10024673m.g' => 'esa', 'Thhalv10029187m.g' => 'esa', 'TPR.G12971' => 'tpr', 'TPR.G29396' => 'tpr', 'TPR.G33376' => 'tpr', 'TPR.G35508' => 'tpr', 'TPR.G35516' => 'tpr', 'TPR.G37317' => 'tpr', 'TPR.G37389' => 'tpr', 'TPR.G37523' => 'tpr', 'TPR.G559' => 'tpr', 'TWI14G0070' => 'twi', 'TWI14G0729' => 'twi', 'TWI18G0596' => 'twi', 'TWI39G0780' => 'twi', 'TWI39G0850' => 'twi', 'TWI73G1052' => 'twi', 'unitig_52.g17485' => 'ugi', 'unitig_61.g26355' => 'ugi', 'vmacro01040' => 'vma', 'vmacro16731' => 'vma', 'vmacro18270' => 'vma', 'vmacro19142' => 'vma', 'vmacro19407' => 'vma', 'vmacro19408' => 'vma', 'vmacro21899' => 'vma', 'vmacro21900' => 'vma', 'vmacro21901' => 'vma', 'VMungo0251G0490' => 'vmu', 'VMungo0251G1748' => 'vmu', 'VMungo1309G0421' => 'vmu', 'Zm00001eb086500' => 'zma', 'Zm00001eb150680' => 'zma', 'Zm00001eb162330' => 'zma', 'Zm00001eb203130' => 'zma', 'Zm00001eb369480' => 'zma', 'Zm00001eb382340' => 'zma', 'Zm00001eb416360' => 'zma' ) $gf_id = 'HOM05D000902' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000902' ) $data_identifier = 'HOM05D000902' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 13, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 10, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 6, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 9, 'hma' => (int) 12, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 4, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 6, 'ppa' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 6, 'rch' => (int) 9, 'rsi' => (int) 9, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 12, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 3, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416360' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000902', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '663', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02470' => 'bna', 'A01p16260' => 'bna', 'A02p01680' => 'bna', 'A03p16600' => 'bna', 'A03p55660' => 'bna', 'A03p64160' => 'bna', 'A03p64170' => 'bna', 'A08p31900' => 'bna', 'A09p59530' => 'bna', 'A10p08230' => 'bna', 'A10p25090' => 'bna', 'Aa31LG3G7100' => 'aar', 'Aa31LG3G7110' => 'aar', 'Aa31LG6G13160' => 'aar', 'Aa31LG7G10770' => 'aar', 'Aa31LG7G3830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2723' => 'aag', 'Actinidia08045' => 'ach', 'Actinidia08888' => 'ach', 'Actinidia18333' => 'ach', 'Actinidia19334' => 'ach', 'Actinidia25552' => 'ach', 'Actinidia26089' => 'ach', 'Actinidia30615' => 'ach', 'Actinidia30616' => 'ach', 'Actinidia33083' => 'ach', 'Actinidia35762' => 'ach', 'Ah.02g110620' => 'amhyb', 'Ah.11g046390' => 'amhyb', 'AL1G31670' => 'aly', 'AL6G23730' => 'aly', 'AL7G14740' => 'aly', 'AL7G14750' => 'aly', 'AL7G14760' => 'aly', 'AL7G28220' => 'aly', 'AL8G24940' => 'aly', 'Aqoxy3G01665' => 'aox', 'Aqoxy3G02853' => 'aox', 'Aqoxy5G01513' => 'aox', 'Aqoxy5G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8SKA4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ75LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKDA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0LJZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7REX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZP4YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWX7I5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2QKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS0L9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPCD8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q161UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC7XCF' => 'arhy', 'AT1G19100' => 'ath', 'AT4G24970' => 'ath', 'AT4G36270' => 'ath', 'AT4G36280' => 'ath', 'AT4G36290' => 'ath', 'AT5G13130' => 'ath', 'AT5G50780' => 'ath', 'ATR0582G266' => 'atr', 'ATR0661G195' => 'atr', 'ATR1152G031' => 'atr', 'Atru.chr11.2382' => 'acertr', 'Atru.chr12.2337' => 'acertr', 'Atru.chr3.744' => 'acertr', 'Atru.chr6.1870' => 'acertr', 'Atru.chr9.2515' => 'acertr', 'AUR62004120' => 'cqu', 'AUR62005667' => 'cqu', 'AUR62007634' => 'cqu', 'AUR62008186' => 'cqu', 'AUR62008187' => 'cqu', 'AUR62008188' => 'cqu', 'AUR62027954' => 'cqu', 'AUR62028766' => 'cqu', 'AUR62028767' => 'cqu', 'AUR62028768' => 'cqu', 'AUR62028886' => 'cqu', 'AUR62029563' => 'cqu', 'AUR62038832' => 'cqu', 'BcaB01g04149' => 'bca', 'BcaB03g12940' => 'bca', 'BcaB03g13090' => 'bca', 'BcaB03g14466' => 'bca', 'BcaB05g24035' => 'bca', 'BcaC01g06050' => 'bca', 'BcaC04g19148' => 'bca', 'BcaC04g20761' => 'bca', 'BcaC06g32845' => 'bca', 'BcaC07g41274' => 'bca', 'BcaC09g50827' => 'bca', 'BcaNung00741' => 'bca', 'BcaNung00742' => 'bca', 'BcaNung01859' => 'bca', 'BcaNung03985' => 'bca', 'BcaNung03989' => 'bca', 'BcaNung05661' => 'bca', 'BolC1t00257H' => 'bol', 'BolC1t01956H' => 'bol', 'BolC2t06534H' => 'bol', 'BolC3t14334H' => 'bol', 'BolC5t30451H' => 'bol', 'BolC7t45880H' => 'bol', 'BolC7t46586H' => 'bol', 'BolC8t49301H' => 'bol', 'BolC8t51837H' => 'bol', 'BolC9t56822H' => 'bol', 'BolC9t59235H' => 'bol', 'BraA01t00234Z' => 'bra', 'BraA01t01563Z' => 'bra', 'BraA02t05147Z' => 'bra', 'BraA03t10947Z' => 'bra', 'BraA03t14633Z' => 'bra', 'BraA08t35112Z' => 'bra', 'BraA09t41330Z' => 'bra', 'BraA10t44570Z' => 'bra', 'C01p02670' => 'bna', 'C01p20260' => 'bna', 'C02p05890' => 'bna', 'C03p19530' => 'bna', 'C05p17470' => 'bna', 'C07p53900' => 'bna', 'C07p61630' => 'bna', 'C08p16800' => 'bna', 'C08p42810' => 'bna', 'C09p39480' => 'bna', 'C09p63980' => 'bna', 'CAN.G1001.7' => 'can', 'CAN.G1034.55' => 'can', 'CAN.G143.7' => 'can', 'CAN.G3340.1' => 'can', 'CAN.G358.19' => 'can', 'CAN.G373.2' => 'can', 'CAN.G674.16' => 'can', 'CAN.G674.17' => 'can', 'CAN.G674.18' => 'can', 'CAN.G732.2' => 'can', 'CAN.G732.3' => 'can', 'CAN.G993.39' => 'can', 'CANSAT01G2052' => 'cansat', 'CANSAT80G0070' => 'cansat', 'CANSAT80G0483' => 'cansat', 'CANSAT80G0625' => 'cansat', 'CARHR019690' => 'chi', 'CARHR080280' => 'chi', 'CARHR152750' => 'chi', 'CARHR152760' => 'chi', 'CARHR152770' => 'chi', 'CARHR200340' => 'chi', 'CARHR232370' => 'chi', 'CARHR244670' => 'chi', 'CARHR244680' => 'chi', 'CARHR257520' => 'chi', 'Carub.0001s1872' => 'cru', 'Carub.0006s1130' => 'cru', 'Carub.0007s0396' => 'cru', 'Carub.0007s0397' => 'cru', 'Carub.0007s1608' => 'cru', 'Carub.0008s1068' => 'cru', 'Carub.0008s1077' => 'cru', 'Ca_16158_v3' => 'car', 'Ca_17571_v3' => 'car', 'Ca_21936_v3' => 'car', 'Ca_22350_v3' => 'car', 'CBR_g22445' => 'cbr', 'CBR_g26290' => 'cbr', 'Cc04_g09610' => 'ccan', 'Cc04_g12280' => 'ccan', 'Cc07_g10230' => 'ccan', 'CDE02G0093' => 'cde', 'CDE02G0701' => 'cde', 'CDE04G1050' => 'cde', 'CDE05G1833' => 'cde', 'CDE05G3058' => 'cde', 'CDE05G3380' => 'cde', 'CDE06G0536' => 'cde', 'Cfa006923' => 'cfa', 'Cfa009402' => 'cfa', 'Cfa018751' => 'cfa', 'Cfa019164' => 'cfa', 'Cfa022935' => 'cfa', 'Ciclev10019081m.g' => 'ccl', 'Ciclev10025076m.g' => 'ccl', 'Ciclev10030712m.g' => 'ccl', 'Ciclev10033760m.g' => 'ccl', 'CiPaw.05G105600' => 'cil', 'CiPaw.08G136700' => 'cil', 'CiPaw.11G003900' => 'cil', 'CiPaw.11G023700' => 'cil', 'CiPaw.12G003700' => 'cil', 'ClCG06G017100' => 'cla', 'ClCG06G018110' => 'cla', 'ClCG07G008800' => 'cla', 'ClCG07G015330' => 'cla', 'COL.COLO4_13698' => 'col', 'COL.COLO4_16659' => 'col', 'COL.COLO4_21986' => 'col', 'COL.COLO4_24049' => 'col', 'COL.COLO4_29061' => 'col', 'COL.COLO4_29075' => 'col', 'COL.COLO4_30094' => 'col', 'Cpa.g.c33689' => 'cpa', 'Cpa.g.sc108.39' => 'cpa', 'Cpa.g.sc108.41' => 'cpa', 'Cpa.g.sc1163.1' => 'cpa', 'Cpa.g.sc4.155' => 'cpa', 'Cpa.g.sc6.194' => 'cpa', 'CsaV3_1G000340' => 'csa', 'CsaV3_1G001400' => 'csa', 'CsaV3_4G002220' => 'csa', 'CsaV3_4G005370' => 'csa', 'CSS0007487' => 'camsi', 'CSS0008066' => 'camsi', 'CSS0009120' => 'camsi', 'CSS0015512' => 'camsi', 'CSS0022409' => 'camsi', 'CSS0025358' => 'camsi', 'CSS0044547' => 'camsi', 'DCAR_013057' => 'dca', 'DCAR_015058' => 'dca', 'DCAR_016027' => 'dca', 'DCAR_017327' => 'dca', 'DCAR_020743' => 'dca', 'DCAR_026157' => 'dca', 'DCAR_032339' => 'dca', 'DCAR_032340' => 'dca', 'Dinv11200' => 'din', 'Dinv11201' => 'din', 'Dinv20631' => 'din', 'Dinv23182' => 'din', 'Dinv33466' => 'din', 'Dinv33583' => 'din', 'Dinv38565' => 'din', 'Duzib068G0200' => 'dzi', 'Duzib147G0132' => 'dzi', 'Duzib147G0635' => 'dzi', 'Duzib205G1670' => 'dzi', 'Duzib251G0606' => 'dzi', 'ECA232G3336' => 'eca', 'ECA232G3763' => 'eca', 'ECA232G4845' => 'eca', 'ECA234G1607' => 'eca', 'ECA246G0932' => 'eca', 'ECA247G0781' => 'eca', 'ECA247G1932' => 'eca', 'ECA247G2079' => 'eca', 'ECA247G3338' => 'eca', 'ECA247G4115' => 'eca', 'EL10Ac3g06552' => 'bvu', 'EL10Ac5g10721' => 'bvu', 'EL10Ac5g10722' => 'bvu', 'EL10Ac5g10723' => 'bvu', 'EL10Ac5g11361' => 'bvu', 'EL10Ac6g13553' => 'bvu', 'EL10As8g23872' => 'bvu', 'Eucgr.B00250' => 'egr', 'Eucgr.B00251' => 'egr', 'Eucgr.B03533' => 'egr', 'Eucgr.I02381' => 'egr', 'Eucgr.K02700' => 'egr', 'FAN02G0174' => 'fan', 'FAN02G3146' => 'fan', 'FAN04G1672' => 'fan', 'FAN04G2273' => 'fan', 'FAN05G2791' => 'fan', 'FAN05G4035' => 'fan', 'FAN07G0834' => 'fan', 'FAN08G1198' => 'fan', 'FAN09G4182' => 'fan', 'FAN12G0496' => 'fan', 'FAN13G1027' => 'fan', 'FAN13G2951' => 'fan', 'FAN14G0705' => 'fan', 'FAN14G0720' => 'fan', 'FAN17G0201' => 'fan', 'FAN17G2665' => 'fan', 'FAN18G1456' => 'fan', 'FAN18G1525' => 'fan', 'FAN18G3500' => 'fan', 'FAN28G2670' => 'fan', 'FvH4_1g12391' => 'fve', 'FvH4_4g23220' => 'fve', 'FvH4_5g08810' => 'fve', 'FvH4_5g28960' => 'fve', 'FvH4_6g42820' => 'fve', 'FvH4_6g51110' => 'fve', 'Glyma.02G051802' => 'gma', 'Glyma.04G185300' => 'gma', 'Glyma.05G202900' => 'gma', 'Glyma.08G010300' => 'gma', 'Glyma.16G131900' => 'gma', 'Glyma.17G087900' => 'gma', 'Gohir.A07G048600' => 'ghi', 'Gohir.A11G179000' => 'ghi', 'Gohir.A12G140900' => 'ghi', 'Gohir.A12G140950' => 'ghi', 'Gohir.A12G191700' => 'ghi', 'Gohir.A13G086300' => 'ghi', 'Gohir.D07G052900' => 'ghi', 'Gohir.D11G186600' => 'ghi', 'Gohir.D12G145575' => 'ghi', 'Gohir.D12G145650' => 'ghi', 'Gohir.D12G145725' => 'ghi', 'Gohir.D12G194050' => 'ghi', 'Gohir.D13G091800' => 'ghi', 'Gorai.001G055900' => 'gra', 'Gorai.007G198400' => 'gra', 'Gorai.008G157000' => 'gra', 'Gorai.008G157100' => 'gra', 'Gorai.008G208700' => 'gra', 'Gorai.010G138700' => 'gra', 'GSVIVG01000977001' => 'vvi', 'GSVIVG01007708001' => 'vvi', 'GSVIVG01008587001' => 'vvi', 'GSVIVG01018849001' => 'vvi', 'GSVIVG01032432001' => 'vvi', 'HanXRQChr02g0034131' => 'han', 'HanXRQChr02g0035981' => 'han', 'HanXRQChr02g0035991' => 'han', 'HanXRQChr05g0155611' => 'han', 'HanXRQChr05g0155621' => 'han', 'HanXRQChr08g0236501' => 'han', 'HanXRQChr09g0261321' => 'han', 'HanXRQChr09g0272081' => 'han', 'HanXRQChr10g0310741' => 'han', 'HanXRQChr11g0325591' => 'han', 'HanXRQChr12g0385691' => 'han', 'HanXRQChr13g0387801' => 'han', 'HanXRQChr15g0463011' => 'han', 'Haze_03826' => 'cav', 'Haze_03827' => 'cav', 'Haze_07183' => 'cav', 'Haze_07537' => 'cav', 'Haze_07539' => 'cav', 'Haze_12461' => 'cav', 'Haze_16115' => 'cav', 'Haze_16808' => 'cav', 'Haze_18531' => 'cav', 'Hma1.2p1_0046F.1_g026700' => 'hma', 'Hma1.2p1_0046F.1_g026710' => 'hma', 'Hma1.2p1_0168F.1_g074340' => 'hma', 'Hma1.2p1_0266F.1_g107030' => 'hma', 'Hma1.2p1_0266F.1_g107060' => 'hma', 'Hma1.2p1_0275F.1_g110510' => 'hma', 'Hma1.2p1_0592F.1_g185490' => 'hma', 'Hma1.2p1_0592F.1_g185500' => 'hma', 'Hma1.2p1_0592F.1_g185510' => 'hma', 'Hma1.2p1_0592F.1_g185520' => 'hma', 'Hma1.2p1_0592F.1_g185530' => 'hma', 'Hma1.2p1_0818F.1_g223450' => 'hma', 'HPP92_009708' => 'vpl', 'HPP92_009793' => 'vpl', 'HPP92_009796' => 'vpl', 'HPP92_009797' => 'vpl', 'HPP92_014940' => 'vpl', 'HPP92_014988' => 'vpl', 'Hund02463' => 'sun', 'Hund02760' => 'sun', 'Hund05071' => 'sun', 'Hund10108' => 'sun', 'Hund11204' => 'sun', 'Hund14016' => 'sun', 'Hund16464' => 'sun', 'Lalb_Chr09g0333391' => 'lal', 'Lalb_Chr11g0070461' => 'lal', 'Lalb_Chr12g0201671' => 'lal', 'Lalb_Chr13g0297161' => 'lal', 'Lj1g0002823' => 'lja', 'Lj3C1074T6' => 'lonja', 'Lj4A212T28' => 'lonja', 'Lj4g0005516' => 'lja', 'Lj4g0013705' => 'lja', 'Lj4g0027865' => 'lja', 'Lj5C92G16' => 'lonja', 'Lj5C92T12' => 'lonja', 'Lj7C596T3' => 'lonja', 'Lj9A446G59' => 'lonja', 'Lj9A482G21' => 'lonja', 'Lsat_1_v5_gn_1_28261' => 'lsa', 'Lsat_1_v5_gn_1_28281' => 'lsa', 'Lsat_1_v5_gn_1_32721' => 'lsa', 'Lsat_1_v5_gn_4_151760' => 'lsa', 'Lsat_1_v5_gn_4_2120' => 'lsa', 'Lsat_1_v5_gn_4_75761' => 'lsa', 'Lsat_1_v5_gn_5_10920' => 'lsa', 'Manes.02G099900' => 'mes', 'Manes.11G096200' => 'mes', 'Manes.12G007200' => 'mes', 'Manes.14G048300' => 'mes', 'Manes.17G114700' => 'mes', 'Mapoly0002s0070' => 'mpo', 'Mapoly0029s0099' => 'mpo', 'MBI07_g24742_MAGBIO' => 'mbi', 'MBI10_g27988_MAGBIO' => 'mbi', 'MBI11_g13057_MAGBIO' => 'mbi', 'MD02G1137200' => 'mdo', 'MD06G1137200' => 'mdo', 'MD07G1122300' => 'mdo', 'MD09G1078200' => 'mdo', 'MD13G1123700' => 'mdo', 'MD14G1151900' => 'mdo', 'MD17G1030900' => 'mdo', 'MD17G1068200' => 'mdo', 'MD17G1068600' => 'mdo', 'Medtr3g077540' => 'mtr', 'Medtr4g105530' => 'mtr', 'Medtr8g076580' => 'mtr', 'Medtr8g076590' => 'mtr', 'Medtr8g096410' => 'mtr', 'MELO3C016411.2' => 'cme', 'MELO3C017780.2' => 'cme', 'MELO3C022560.2' => 'cme', 'MELO3C026187.2' => 'cme', 'MELO3C026286.2' => 'cme', 'MELO3C032854.2' => 'cme', 'Migut.H02495' => 'egut', 'Migut.I00561' => 'egut', 'Migut.K01015' => 'egut', 'Migut.K01016' => 'egut', 'Migut.L00743' => 'egut', 'Migut.L00744' => 'egut', 'Migut.L00746' => 'egut', 'Migut.L00798' => 'egut', 'Migut.L00799' => 'egut', 'Migut.N02096' => 'egut', 'MSTRG.11259' => 'ama', 'MSTRG.23142' => 'ama', 'MSTRG.2499' => 'ama', 'Nitab4.5_0000003g0730' => 'nta', 'Nitab4.5_0000137g0020' => 'nta', 'Nitab4.5_0000721g0210' => 'nta', 'Nitab4.5_0000723g0050' => 'nta', 'Nitab4.5_0000913g0070' => 'nta', 'Nitab4.5_0001332g0040' => 'nta', 'Nitab4.5_0001771g0050' => 'nta', 'Nitab4.5_0001918g0050' => 'nta', 'Nitab4.5_0002686g0030' => 'nta', 'Nitab4.5_0003156g0020' => 'nta', 'Nitab4.5_0003383g0040' => 'nta', 'Nitab4.5_0003918g0010' => 'nta', 'Nitab4.5_0006760g0010' => 'nta', 'Nn1g05981' => 'nnu', 'Nn1g06288' => 'nnu', 'Nn3g16371' => 'nnu', 'Nn3g16786' => 'nnu', 'Nn4g22232' => 'nnu', 'Oeu005144.1' => 'oeu', 'Oeu005145.1' => 'oeu', 'Oeu011348.1' => 'oeu', 'Oeu016415.1' => 'oeu', 'Oeu023501.1' => 'oeu', 'Oeu044473.1' => 'oeu', 'Oeu048892.2' => 'oeu', 'Os01g0549200' => 'osa', 'Os02g0469300' => 'osa', 'Os04g0311100' => 'osa', 'Os06g0474900' => 'osa', 'Os10g0181700' => 'osa', 'Os11g0454800' => 'osa', 'Peaxi162Scf00037g00714' => 'pax', 'Peaxi162Scf00084g01217' => 'pax', 'Peaxi162Scf00257g00217' => 'pax', 'Peaxi162Scf00516g00215' => 'pax', 'Peaxi162Scf00689g00123' => 'pax', 'PGR044G2719' => 'pgr', 'PGR083G1360' => 'pgr', 'PGR102G2849' => 'pgr', 'PGR119G2534' => 'pgr', 'PGSC0003DMG400003538' => 'stu', 'PGSC0003DMG400028138' => 'stu', 'PGSC0003DMG400031732' => 'stu', 'PGSC0003DMG400038165' => 'stu', 'Phvul.002G284600' => 'pvu', 'Phvul.003G258200' => 'pvu', 'Phvul.009G176500' => 'pvu', 'Potri.003G167201' => 'ptr', 'Potri.005G118400' => 'ptr', 'Potri.012G089000' => 'ptr', 'Potri.012G102800' => 'ptr', 'Potri.015G079400' => 'ptr', 'Potri.015G100900' => 'ptr', 'Pp3c14_9810' => 'ppa', 'Pp3c15_10450' => 'ppa', 'Pp3c20_19150' => 'ppa', 'Pp3c23_12740' => 'ppa', 'Pp3c23_6310' => 'ppa', 'Pp3c24_3720' => 'ppa', 'Pp3c27_2580' => 'ppa', 'Pp3c9_8990' => 'ppa', 'PRCOL_00002854' => 'pco', 'Prupe.1G221200' => 'ppe', 'Prupe.3G289000' => 'ppe', 'Prupe.5G147000' => 'ppe', 'Prupe.6G157300' => 'ppe', 'Prupe.7G163400' => 'ppe', 'Psat0s2177g0040' => 'psa', 'Psat3g174760' => 'psa', 'Psat3g192160' => 'psa', 'Psat4g058520' => 'psa', 'Psat4g096840' => 'psa', 'Psat7g037320' => 'psa', 'PSO017G1274' => 'pso', 'PSO017G5166' => 'pso', 'PSO063G4558' => 'pso', 'PSO170G4458' => 'pso', 'PSO170G5005' => 'pso', 'PSO210G6156' => 'pso', 'PSO210G6635' => 'pso', 'PSO210G7397' => 'pso', 'PSO210G7700' => 'pso', 'PSO455G0035' => 'pso', 'PSO455G0180' => 'pso', 'PSO478G4515' => 'pso', 'PSO832G1305' => 'pso', 'PSO832G3489' => 'pso', 'QL02p075247' => 'qlo', 'QL03p051148' => 'qlo', 'QL05p010313' => 'qlo', 'QL06p034627' => 'qlo', 'QL10p001889' => 'qlo', 'QL10p010846' => 'qlo', 'RcHm_v2.0_Chr1g0350621' => 'rch', 'RcHm_v2.0_Chr1g0350641' => 'rch', 'RcHm_v2.0_Chr2g0092891' => 'rch', 'RcHm_v2.0_Chr2g0100251' => 'rch', 'RcHm_v2.0_Chr2g0158661' => 'rch', 'RcHm_v2.0_Chr2g0172741' => 'rch', 'RcHm_v2.0_Chr4g0429571' => 'rch', 'RcHm_v2.0_Chr5g0042471' => 'rch', 'RcHm_v2.0_Chr7g0189451' => 'rch', 'Rhsim08G0052000' => 'rsi', 'Rhsim08G0174400' => 'rsi', 'Rhsim08G0193200' => 'rsi', 'Rhsim10G0214800' => 'rsi', 'Rhsim10G0214900' => 'rsi', 'Rhsim10G0215000' => 'rsi', 'Rhsim12G0022900' => 'rsi', 'Rhsim12G0177500' => 'rsi', 'Rhsim12G0177700' => 'rsi', 'Sabra03G0122600' => 'sbr', 'Sabra05G0097400' => 'sbr', 'Sabra12G0064100' => 'sbr', 'Sabra15G0121300' => 'sbr', 'SalBow2G0642' => 'sbo', 'SalBow5G2667' => 'sbo', 'SalBow5G4873' => 'sbo', 'SalBow8G2395' => 'sbo', 'Sc03g0003290' => 'sci', 'Sc10g0010130' => 'sci', 'Sc22g0003650' => 'sci', 'Sed0001603' => 'sed', 'Sed0004259' => 'sed', 'Sed0006789' => 'sed', 'Sed0011838' => 'sed', 'Sed0012964' => 'sed', 'Sed0016383' => 'sed', 'Sed0019010' => 'sed', 'Sed0020188' => 'sed', 'SEGI_04702' => 'sgi', 'SEGI_17231' => 'sgi', 'SEGI_18877' => 'sgi', 'SEGI_25196' => 'sgi', 'SEGI_25515' => 'sgi', 'SEGI_28445' => 'sgi', 'SEGI_37452' => 'sgi', 'SGA_v2.0_scaffold188G40336' => 'sas', 'SGA_v2.0_scaffold228G43247' => 'sas', 'SGA_v2.0_scaffold280G46853' => 'sas', 'SGA_v2.0_scaffold34G13808' => 'sas', 'SGA_v2.0_scaffold40G15576' => 'sas', 'SGA_v2.0_scaffold611G53188' => 'sas', 'SGA_v2.0_scaffold78G25461' => 'sas', 'SGA_v2.0_scaffold90G27888' => 'sas', 'SHI08601' => 'shi', 'SHI08606' => 'shi', 'SHI17117' => 'shi', 'SHI17119' => 'shi', 'SMO118G0201' => 'smo', 'SMO169G0247' => 'smo', 'SMO176G0006' => 'smo', 'SMO176G0015' => 'smo', 'SMO202G0006' => 'smo', 'SMO240G0050' => 'smo', 'SMO286G0009' => 'smo', 'SMO338G0033' => 'smo', 'SMO356G0533' => 'smo', 'SMO364G0382' => 'smo', 'SMO367G0166' => 'smo', 'SMO367G1098' => 'smo', 'Solyc01g009920.3' => 'sly', 'Solyc01g099300.3' => 'sly', 'Solyc02g084700.3' => 'sly', 'Solyc03g097520.3' => 'sly', 'Solyc06g071580.3' => 'sly', 'Solyc10g081760.3' => 'sly', 'Sopen01g005480' => 'spe', 'Sopen01g042850' => 'spe', 'Sopen02g029370' => 'spe', 'Sopen03g028280' => 'spe', 'Sopen06g027870' => 'spe', 'Sopen10g032270' => 'spe', 'Sp5g18180' => 'spa', 'Sp6g12880' => 'spa', 'Sp6g30850' => 'spa', 'Sp7g22960' => 'spa', 'Sp7g34010' => 'spa', 'SpUn1326_0010' => 'spa', 'TAR371G0242' => 'tar', 'TAR622G0638' => 'tar', 'TAR628G1548' => 'tar', 'TAR629G1079' => 'tar', 'TAR629G3413' => 'tar', 'THA.LOC104804249' => 'tha', 'THA.LOC104808315' => 'tha', 'THA.LOC104809238' => 'tha', 'THA.LOC104825484' => 'tha', 'Thecc.01G025500' => 'tca', 'Thecc.03G015800' => 'tca', 'Thecc.03G018000' => 'tca', 'Thecc.03G134800' => 'tca', 'Thecc.04G014700' => 'tca', 'Thhalv10006991m.g' => 'esa', 'Thhalv10012707m.g' => 'esa', 'Thhalv10015739m.g' => 'esa', 'Thhalv10024553m.g' => 'esa', 'Thhalv10024673m.g' => 'esa', 'Thhalv10029187m.g' => 'esa', 'TPR.G12971' => 'tpr', 'TPR.G29396' => 'tpr', 'TPR.G33376' => 'tpr', 'TPR.G35508' => 'tpr', 'TPR.G35516' => 'tpr', 'TPR.G37317' => 'tpr', 'TPR.G37389' => 'tpr', 'TPR.G37523' => 'tpr', 'TPR.G559' => 'tpr', 'TWI14G0070' => 'twi', 'TWI14G0729' => 'twi', 'TWI18G0596' => 'twi', 'TWI39G0780' => 'twi', 'TWI39G0850' => 'twi', 'TWI73G1052' => 'twi', 'unitig_52.g17485' => 'ugi', 'unitig_61.g26355' => 'ugi', 'vmacro01040' => 'vma', 'vmacro16731' => 'vma', 'vmacro18270' => 'vma', 'vmacro19142' => 'vma', 'vmacro19407' => 'vma', 'vmacro19408' => 'vma', 'vmacro21899' => 'vma', 'vmacro21900' => 'vma', 'vmacro21901' => 'vma', 'VMungo0251G0490' => 'vmu', 'VMungo0251G1748' => 'vmu', 'VMungo1309G0421' => 'vmu', 'Zm00001eb086500' => 'zma', 'Zm00001eb150680' => 'zma', 'Zm00001eb162330' => 'zma', 'Zm00001eb203130' => 'zma', 'Zm00001eb369480' => 'zma', 'Zm00001eb382340' => 'zma', 'Zm00001eb416360' => 'zma' ), 'gf_id' => 'HOM05D000902', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000902' ), 'data_identifier' => 'HOM05D000902', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000902', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '663', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02470' => 'bna', 'A01p16260' => 'bna', 'A02p01680' => 'bna', 'A03p16600' => 'bna', 'A03p55660' => 'bna', 'A03p64160' => 'bna', 'A03p64170' => 'bna', 'A08p31900' => 'bna', 'A09p59530' => 'bna', 'A10p08230' => 'bna', 'A10p25090' => 'bna', 'Aa31LG3G7100' => 'aar', 'Aa31LG3G7110' => 'aar', 'Aa31LG6G13160' => 'aar', 'Aa31LG7G10770' => 'aar', 'Aa31LG7G3830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2723' => 'aag', 'Actinidia08045' => 'ach', 'Actinidia08888' => 'ach', 'Actinidia18333' => 'ach', 'Actinidia19334' => 'ach', 'Actinidia25552' => 'ach', 'Actinidia26089' => 'ach', 'Actinidia30615' => 'ach', 'Actinidia30616' => 'ach', 'Actinidia33083' => 'ach', 'Actinidia35762' => 'ach', 'Ah.02g110620' => 'amhyb', 'Ah.11g046390' => 'amhyb', 'AL1G31670' => 'aly', 'AL6G23730' => 'aly', 'AL7G14740' => 'aly', 'AL7G14750' => 'aly', 'AL7G14760' => 'aly', 'AL7G28220' => 'aly', 'AL8G24940' => 'aly', 'Aqoxy3G01665' => 'aox', 'Aqoxy3G02853' => 'aox', 'Aqoxy5G01513' => 'aox', 'Aqoxy5G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8SKA4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ75LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKDA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0LJZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7REX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZP4YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWX7I5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2QKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS0L9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPCD8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q161UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC7XCF' => 'arhy', 'AT1G19100' => 'ath', 'AT4G24970' => 'ath', 'AT4G36270' => 'ath', 'AT4G36280' => 'ath', 'AT4G36290' => 'ath', 'AT5G13130' => 'ath', 'AT5G50780' => 'ath', 'ATR0582G266' => 'atr', 'ATR0661G195' => 'atr', 'ATR1152G031' => 'atr', 'Atru.chr11.2382' => 'acertr', 'Atru.chr12.2337' => 'acertr', 'Atru.chr3.744' => 'acertr', 'Atru.chr6.1870' => 'acertr', 'Atru.chr9.2515' => 'acertr', 'AUR62004120' => 'cqu', 'AUR62005667' => 'cqu', 'AUR62007634' => 'cqu', 'AUR62008186' => 'cqu', 'AUR62008187' => 'cqu', 'AUR62008188' => 'cqu', 'AUR62027954' => 'cqu', 'AUR62028766' => 'cqu', 'AUR62028767' => 'cqu', 'AUR62028768' => 'cqu', 'AUR62028886' => 'cqu', 'AUR62029563' => 'cqu', 'AUR62038832' => 'cqu', 'BcaB01g04149' => 'bca', 'BcaB03g12940' => 'bca', 'BcaB03g13090' => 'bca', 'BcaB03g14466' => 'bca', 'BcaB05g24035' => 'bca', 'BcaC01g06050' => 'bca', 'BcaC04g19148' => 'bca', 'BcaC04g20761' => 'bca', 'BcaC06g32845' => 'bca', 'BcaC07g41274' => 'bca', 'BcaC09g50827' => 'bca', 'BcaNung00741' => 'bca', 'BcaNung00742' => 'bca', 'BcaNung01859' => 'bca', 'BcaNung03985' => 'bca', 'BcaNung03989' => 'bca', 'BcaNung05661' => 'bca', 'BolC1t00257H' => 'bol', 'BolC1t01956H' => 'bol', 'BolC2t06534H' => 'bol', 'BolC3t14334H' => 'bol', 'BolC5t30451H' => 'bol', 'BolC7t45880H' => 'bol', 'BolC7t46586H' => 'bol', 'BolC8t49301H' => 'bol', 'BolC8t51837H' => 'bol', 'BolC9t56822H' => 'bol', 'BolC9t59235H' => 'bol', 'BraA01t00234Z' => 'bra', 'BraA01t01563Z' => 'bra', 'BraA02t05147Z' => 'bra', 'BraA03t10947Z' => 'bra', 'BraA03t14633Z' => 'bra', 'BraA08t35112Z' => 'bra', 'BraA09t41330Z' => 'bra', 'BraA10t44570Z' => 'bra', 'C01p02670' => 'bna', 'C01p20260' => 'bna', 'C02p05890' => 'bna', 'C03p19530' => 'bna', 'C05p17470' => 'bna', 'C07p53900' => 'bna', 'C07p61630' => 'bna', 'C08p16800' => 'bna', 'C08p42810' => 'bna', 'C09p39480' => 'bna', 'C09p63980' => 'bna', 'CAN.G1001.7' => 'can', 'CAN.G1034.55' => 'can', 'CAN.G143.7' => 'can', 'CAN.G3340.1' => 'can', 'CAN.G358.19' => 'can', 'CAN.G373.2' => 'can', 'CAN.G674.16' => 'can', 'CAN.G674.17' => 'can', 'CAN.G674.18' => 'can', 'CAN.G732.2' => 'can', 'CAN.G732.3' => 'can', 'CAN.G993.39' => 'can', 'CANSAT01G2052' => 'cansat', 'CANSAT80G0070' => 'cansat', 'CANSAT80G0483' => 'cansat', 'CANSAT80G0625' => 'cansat', 'CARHR019690' => 'chi', 'CARHR080280' => 'chi', 'CARHR152750' => 'chi', 'CARHR152760' => 'chi', 'CARHR152770' => 'chi', 'CARHR200340' => 'chi', 'CARHR232370' => 'chi', 'CARHR244670' => 'chi', 'CARHR244680' => 'chi', 'CARHR257520' => 'chi', 'Carub.0001s1872' => 'cru', 'Carub.0006s1130' => 'cru', 'Carub.0007s0396' => 'cru', 'Carub.0007s0397' => 'cru', 'Carub.0007s1608' => 'cru', 'Carub.0008s1068' => 'cru', 'Carub.0008s1077' => 'cru', 'Ca_16158_v3' => 'car', 'Ca_17571_v3' => 'car', 'Ca_21936_v3' => 'car', 'Ca_22350_v3' => 'car', 'CBR_g22445' => 'cbr', 'CBR_g26290' => 'cbr', 'Cc04_g09610' => 'ccan', 'Cc04_g12280' => 'ccan', 'Cc07_g10230' => 'ccan', 'CDE02G0093' => 'cde', 'CDE02G0701' => 'cde', 'CDE04G1050' => 'cde', 'CDE05G1833' => 'cde', 'CDE05G3058' => 'cde', 'CDE05G3380' => 'cde', 'CDE06G0536' => 'cde', 'Cfa006923' => 'cfa', 'Cfa009402' => 'cfa', 'Cfa018751' => 'cfa', 'Cfa019164' => 'cfa', 'Cfa022935' => 'cfa', 'Ciclev10019081m.g' => 'ccl', 'Ciclev10025076m.g' => 'ccl', 'Ciclev10030712m.g' => 'ccl', 'Ciclev10033760m.g' => 'ccl', 'CiPaw.05G105600' => 'cil', 'CiPaw.08G136700' => 'cil', 'CiPaw.11G003900' => 'cil', 'CiPaw.11G023700' => 'cil', 'CiPaw.12G003700' => 'cil', 'ClCG06G017100' => 'cla', 'ClCG06G018110' => 'cla', 'ClCG07G008800' => 'cla', 'ClCG07G015330' => 'cla', 'COL.COLO4_13698' => 'col', 'COL.COLO4_16659' => 'col', 'COL.COLO4_21986' => 'col', 'COL.COLO4_24049' => 'col', 'COL.COLO4_29061' => 'col', 'COL.COLO4_29075' => 'col', 'COL.COLO4_30094' => 'col', 'Cpa.g.c33689' => 'cpa', 'Cpa.g.sc108.39' => 'cpa', 'Cpa.g.sc108.41' => 'cpa', 'Cpa.g.sc1163.1' => 'cpa', 'Cpa.g.sc4.155' => 'cpa', 'Cpa.g.sc6.194' => 'cpa', 'CsaV3_1G000340' => 'csa', 'CsaV3_1G001400' => 'csa', 'CsaV3_4G002220' => 'csa', 'CsaV3_4G005370' => 'csa', 'CSS0007487' => 'camsi', 'CSS0008066' => 'camsi', 'CSS0009120' => 'camsi', 'CSS0015512' => 'camsi', 'CSS0022409' => 'camsi', 'CSS0025358' => 'camsi', 'CSS0044547' => 'camsi', 'DCAR_013057' => 'dca', 'DCAR_015058' => 'dca', 'DCAR_016027' => 'dca', 'DCAR_017327' => 'dca', 'DCAR_020743' => 'dca', 'DCAR_026157' => 'dca', 'DCAR_032339' => 'dca', 'DCAR_032340' => 'dca', 'Dinv11200' => 'din', 'Dinv11201' => 'din', 'Dinv20631' => 'din', 'Dinv23182' => 'din', 'Dinv33466' => 'din', 'Dinv33583' => 'din', 'Dinv38565' => 'din', 'Duzib068G0200' => 'dzi', 'Duzib147G0132' => 'dzi', 'Duzib147G0635' => 'dzi', 'Duzib205G1670' => 'dzi', 'Duzib251G0606' => 'dzi', 'ECA232G3336' => 'eca', 'ECA232G3763' => 'eca', 'ECA232G4845' => 'eca', 'ECA234G1607' => 'eca', 'ECA246G0932' => 'eca', 'ECA247G0781' => 'eca', 'ECA247G1932' => 'eca', 'ECA247G2079' => 'eca', 'ECA247G3338' => 'eca', 'ECA247G4115' => 'eca', 'EL10Ac3g06552' => 'bvu', 'EL10Ac5g10721' => 'bvu', 'EL10Ac5g10722' => 'bvu', 'EL10Ac5g10723' => 'bvu', 'EL10Ac5g11361' => 'bvu', 'EL10Ac6g13553' => 'bvu', 'EL10As8g23872' => 'bvu', 'Eucgr.B00250' => 'egr', 'Eucgr.B00251' => 'egr', 'Eucgr.B03533' => 'egr', 'Eucgr.I02381' => 'egr', 'Eucgr.K02700' => 'egr', 'FAN02G0174' => 'fan', 'FAN02G3146' => 'fan', 'FAN04G1672' => 'fan', 'FAN04G2273' => 'fan', 'FAN05G2791' => 'fan', 'FAN05G4035' => 'fan', 'FAN07G0834' => 'fan', 'FAN08G1198' => 'fan', 'FAN09G4182' => 'fan', 'FAN12G0496' => 'fan', 'FAN13G1027' => 'fan', 'FAN13G2951' => 'fan', 'FAN14G0705' => 'fan', 'FAN14G0720' => 'fan', 'FAN17G0201' => 'fan', 'FAN17G2665' => 'fan', 'FAN18G1456' => 'fan', 'FAN18G1525' => 'fan', 'FAN18G3500' => 'fan', 'FAN28G2670' => 'fan', 'FvH4_1g12391' => 'fve', 'FvH4_4g23220' => 'fve', 'FvH4_5g08810' => 'fve', 'FvH4_5g28960' => 'fve', 'FvH4_6g42820' => 'fve', 'FvH4_6g51110' => 'fve', 'Glyma.02G051802' => 'gma', 'Glyma.04G185300' => 'gma', 'Glyma.05G202900' => 'gma', 'Glyma.08G010300' => 'gma', 'Glyma.16G131900' => 'gma', 'Glyma.17G087900' => 'gma', 'Gohir.A07G048600' => 'ghi', 'Gohir.A11G179000' => 'ghi', 'Gohir.A12G140900' => 'ghi', 'Gohir.A12G140950' => 'ghi', 'Gohir.A12G191700' => 'ghi', 'Gohir.A13G086300' => 'ghi', 'Gohir.D07G052900' => 'ghi', 'Gohir.D11G186600' => 'ghi', 'Gohir.D12G145575' => 'ghi', 'Gohir.D12G145650' => 'ghi', 'Gohir.D12G145725' => 'ghi', 'Gohir.D12G194050' => 'ghi', 'Gohir.D13G091800' => 'ghi', 'Gorai.001G055900' => 'gra', 'Gorai.007G198400' => 'gra', 'Gorai.008G157000' => 'gra', 'Gorai.008G157100' => 'gra', 'Gorai.008G208700' => 'gra', 'Gorai.010G138700' => 'gra', 'GSVIVG01000977001' => 'vvi', 'GSVIVG01007708001' => 'vvi', 'GSVIVG01008587001' => 'vvi', 'GSVIVG01018849001' => 'vvi', 'GSVIVG01032432001' => 'vvi', 'HanXRQChr02g0034131' => 'han', 'HanXRQChr02g0035981' => 'han', 'HanXRQChr02g0035991' => 'han', 'HanXRQChr05g0155611' => 'han', 'HanXRQChr05g0155621' => 'han', 'HanXRQChr08g0236501' => 'han', 'HanXRQChr09g0261321' => 'han', 'HanXRQChr09g0272081' => 'han', 'HanXRQChr10g0310741' => 'han', 'HanXRQChr11g0325591' => 'han', 'HanXRQChr12g0385691' => 'han', 'HanXRQChr13g0387801' => 'han', 'HanXRQChr15g0463011' => 'han', 'Haze_03826' => 'cav', 'Haze_03827' => 'cav', 'Haze_07183' => 'cav', 'Haze_07537' => 'cav', 'Haze_07539' => 'cav', 'Haze_12461' => 'cav', 'Haze_16115' => 'cav', 'Haze_16808' => 'cav', 'Haze_18531' => 'cav', 'Hma1.2p1_0046F.1_g026700' => 'hma', 'Hma1.2p1_0046F.1_g026710' => 'hma', 'Hma1.2p1_0168F.1_g074340' => 'hma', 'Hma1.2p1_0266F.1_g107030' => 'hma', 'Hma1.2p1_0266F.1_g107060' => 'hma', 'Hma1.2p1_0275F.1_g110510' => 'hma', 'Hma1.2p1_0592F.1_g185490' => 'hma', 'Hma1.2p1_0592F.1_g185500' => 'hma', 'Hma1.2p1_0592F.1_g185510' => 'hma', 'Hma1.2p1_0592F.1_g185520' => 'hma', 'Hma1.2p1_0592F.1_g185530' => 'hma', 'Hma1.2p1_0818F.1_g223450' => 'hma', 'HPP92_009708' => 'vpl', 'HPP92_009793' => 'vpl', 'HPP92_009796' => 'vpl', 'HPP92_009797' => 'vpl', 'HPP92_014940' => 'vpl', 'HPP92_014988' => 'vpl', 'Hund02463' => 'sun', 'Hund02760' => 'sun', 'Hund05071' => 'sun', 'Hund10108' => 'sun', 'Hund11204' => 'sun', 'Hund14016' => 'sun', 'Hund16464' => 'sun', 'Lalb_Chr09g0333391' => 'lal', 'Lalb_Chr11g0070461' => 'lal', 'Lalb_Chr12g0201671' => 'lal', 'Lalb_Chr13g0297161' => 'lal', 'Lj1g0002823' => 'lja', 'Lj3C1074T6' => 'lonja', 'Lj4A212T28' => 'lonja', 'Lj4g0005516' => 'lja', 'Lj4g0013705' => 'lja', 'Lj4g0027865' => 'lja', 'Lj5C92G16' => 'lonja', 'Lj5C92T12' => 'lonja', 'Lj7C596T3' => 'lonja', 'Lj9A446G59' => 'lonja', 'Lj9A482G21' => 'lonja', 'Lsat_1_v5_gn_1_28261' => 'lsa', 'Lsat_1_v5_gn_1_28281' => 'lsa', 'Lsat_1_v5_gn_1_32721' => 'lsa', 'Lsat_1_v5_gn_4_151760' => 'lsa', 'Lsat_1_v5_gn_4_2120' => 'lsa', 'Lsat_1_v5_gn_4_75761' => 'lsa', 'Lsat_1_v5_gn_5_10920' => 'lsa', 'Manes.02G099900' => 'mes', 'Manes.11G096200' => 'mes', 'Manes.12G007200' => 'mes', 'Manes.14G048300' => 'mes', 'Manes.17G114700' => 'mes', 'Mapoly0002s0070' => 'mpo', 'Mapoly0029s0099' => 'mpo', 'MBI07_g24742_MAGBIO' => 'mbi', 'MBI10_g27988_MAGBIO' => 'mbi', 'MBI11_g13057_MAGBIO' => 'mbi', 'MD02G1137200' => 'mdo', 'MD06G1137200' => 'mdo', 'MD07G1122300' => 'mdo', 'MD09G1078200' => 'mdo', 'MD13G1123700' => 'mdo', 'MD14G1151900' => 'mdo', 'MD17G1030900' => 'mdo', 'MD17G1068200' => 'mdo', 'MD17G1068600' => 'mdo', 'Medtr3g077540' => 'mtr', 'Medtr4g105530' => 'mtr', 'Medtr8g076580' => 'mtr', 'Medtr8g076590' => 'mtr', 'Medtr8g096410' => 'mtr', 'MELO3C016411.2' => 'cme', 'MELO3C017780.2' => 'cme', 'MELO3C022560.2' => 'cme', 'MELO3C026187.2' => 'cme', 'MELO3C026286.2' => 'cme', 'MELO3C032854.2' => 'cme', 'Migut.H02495' => 'egut', 'Migut.I00561' => 'egut', 'Migut.K01015' => 'egut', 'Migut.K01016' => 'egut', 'Migut.L00743' => 'egut', 'Migut.L00744' => 'egut', 'Migut.L00746' => 'egut', 'Migut.L00798' => 'egut', 'Migut.L00799' => 'egut', 'Migut.N02096' => 'egut', 'MSTRG.11259' => 'ama', 'MSTRG.23142' => 'ama', 'MSTRG.2499' => 'ama', 'Nitab4.5_0000003g0730' => 'nta', 'Nitab4.5_0000137g0020' => 'nta', 'Nitab4.5_0000721g0210' => 'nta', 'Nitab4.5_0000723g0050' => 'nta', 'Nitab4.5_0000913g0070' => 'nta', 'Nitab4.5_0001332g0040' => 'nta', 'Nitab4.5_0001771g0050' => 'nta', 'Nitab4.5_0001918g0050' => 'nta', 'Nitab4.5_0002686g0030' => 'nta', 'Nitab4.5_0003156g0020' => 'nta', 'Nitab4.5_0003383g0040' => 'nta', 'Nitab4.5_0003918g0010' => 'nta', 'Nitab4.5_0006760g0010' => 'nta', 'Nn1g05981' => 'nnu', 'Nn1g06288' => 'nnu', 'Nn3g16371' => 'nnu', 'Nn3g16786' => 'nnu', 'Nn4g22232' => 'nnu', 'Oeu005144.1' => 'oeu', 'Oeu005145.1' => 'oeu', 'Oeu011348.1' => 'oeu', 'Oeu016415.1' => 'oeu', 'Oeu023501.1' => 'oeu', 'Oeu044473.1' => 'oeu', 'Oeu048892.2' => 'oeu', 'Os01g0549200' => 'osa', 'Os02g0469300' => 'osa', 'Os04g0311100' => 'osa', 'Os06g0474900' => 'osa', 'Os10g0181700' => 'osa', 'Os11g0454800' => 'osa', 'Peaxi162Scf00037g00714' => 'pax', 'Peaxi162Scf00084g01217' => 'pax', 'Peaxi162Scf00257g00217' => 'pax', 'Peaxi162Scf00516g00215' => 'pax', 'Peaxi162Scf00689g00123' => 'pax', 'PGR044G2719' => 'pgr', 'PGR083G1360' => 'pgr', 'PGR102G2849' => 'pgr', 'PGR119G2534' => 'pgr', 'PGSC0003DMG400003538' => 'stu', 'PGSC0003DMG400028138' => 'stu', 'PGSC0003DMG400031732' => 'stu', 'PGSC0003DMG400038165' => 'stu', 'Phvul.002G284600' => 'pvu', 'Phvul.003G258200' => 'pvu', 'Phvul.009G176500' => 'pvu', 'Potri.003G167201' => 'ptr', 'Potri.005G118400' => 'ptr', 'Potri.012G089000' => 'ptr', 'Potri.012G102800' => 'ptr', 'Potri.015G079400' => 'ptr', 'Potri.015G100900' => 'ptr', 'Pp3c14_9810' => 'ppa', 'Pp3c15_10450' => 'ppa', 'Pp3c20_19150' => 'ppa', 'Pp3c23_12740' => 'ppa', 'Pp3c23_6310' => 'ppa', 'Pp3c24_3720' => 'ppa', 'Pp3c27_2580' => 'ppa', 'Pp3c9_8990' => 'ppa', 'PRCOL_00002854' => 'pco', 'Prupe.1G221200' => 'ppe', 'Prupe.3G289000' => 'ppe', 'Prupe.5G147000' => 'ppe', 'Prupe.6G157300' => 'ppe', 'Prupe.7G163400' => 'ppe', 'Psat0s2177g0040' => 'psa', 'Psat3g174760' => 'psa', 'Psat3g192160' => 'psa', 'Psat4g058520' => 'psa', 'Psat4g096840' => 'psa', 'Psat7g037320' => 'psa', 'PSO017G1274' => 'pso', 'PSO017G5166' => 'pso', 'PSO063G4558' => 'pso', 'PSO170G4458' => 'pso', 'PSO170G5005' => 'pso', 'PSO210G6156' => 'pso', 'PSO210G6635' => 'pso', 'PSO210G7397' => 'pso', 'PSO210G7700' => 'pso', 'PSO455G0035' => 'pso', 'PSO455G0180' => 'pso', 'PSO478G4515' => 'pso', 'PSO832G1305' => 'pso', 'PSO832G3489' => 'pso', 'QL02p075247' => 'qlo', 'QL03p051148' => 'qlo', 'QL05p010313' => 'qlo', 'QL06p034627' => 'qlo', 'QL10p001889' => 'qlo', 'QL10p010846' => 'qlo', 'RcHm_v2.0_Chr1g0350621' => 'rch', 'RcHm_v2.0_Chr1g0350641' => 'rch', 'RcHm_v2.0_Chr2g0092891' => 'rch', 'RcHm_v2.0_Chr2g0100251' => 'rch', 'RcHm_v2.0_Chr2g0158661' => 'rch', 'RcHm_v2.0_Chr2g0172741' => 'rch', 'RcHm_v2.0_Chr4g0429571' => 'rch', 'RcHm_v2.0_Chr5g0042471' => 'rch', 'RcHm_v2.0_Chr7g0189451' => 'rch', 'Rhsim08G0052000' => 'rsi', 'Rhsim08G0174400' => 'rsi', 'Rhsim08G0193200' => 'rsi', 'Rhsim10G0214800' => 'rsi', 'Rhsim10G0214900' => 'rsi', 'Rhsim10G0215000' => 'rsi', 'Rhsim12G0022900' => 'rsi', 'Rhsim12G0177500' => 'rsi', 'Rhsim12G0177700' => 'rsi', 'Sabra03G0122600' => 'sbr', 'Sabra05G0097400' => 'sbr', 'Sabra12G0064100' => 'sbr', 'Sabra15G0121300' => 'sbr', 'SalBow2G0642' => 'sbo', 'SalBow5G2667' => 'sbo', 'SalBow5G4873' => 'sbo', 'SalBow8G2395' => 'sbo', 'Sc03g0003290' => 'sci', 'Sc10g0010130' => 'sci', 'Sc22g0003650' => 'sci', 'Sed0001603' => 'sed', 'Sed0004259' => 'sed', 'Sed0006789' => 'sed', 'Sed0011838' => 'sed', 'Sed0012964' => 'sed', 'Sed0016383' => 'sed', 'Sed0019010' => 'sed', 'Sed0020188' => 'sed', 'SEGI_04702' => 'sgi', 'SEGI_17231' => 'sgi', 'SEGI_18877' => 'sgi', 'SEGI_25196' => 'sgi', 'SEGI_25515' => 'sgi', 'SEGI_28445' => 'sgi', 'SEGI_37452' => 'sgi', 'SGA_v2.0_scaffold188G40336' => 'sas', 'SGA_v2.0_scaffold228G43247' => 'sas', 'SGA_v2.0_scaffold280G46853' => 'sas', 'SGA_v2.0_scaffold34G13808' => 'sas', 'SGA_v2.0_scaffold40G15576' => 'sas', 'SGA_v2.0_scaffold611G53188' => 'sas', 'SGA_v2.0_scaffold78G25461' => 'sas', 'SGA_v2.0_scaffold90G27888' => 'sas', 'SHI08601' => 'shi', 'SHI08606' => 'shi', 'SHI17117' => 'shi', 'SHI17119' => 'shi', 'SMO118G0201' => 'smo', 'SMO169G0247' => 'smo', 'SMO176G0006' => 'smo', 'SMO176G0015' => 'smo', 'SMO202G0006' => 'smo', 'SMO240G0050' => 'smo', 'SMO286G0009' => 'smo', 'SMO338G0033' => 'smo', 'SMO356G0533' => 'smo', 'SMO364G0382' => 'smo', 'SMO367G0166' => 'smo', 'SMO367G1098' => 'smo', 'Solyc01g009920.3' => 'sly', 'Solyc01g099300.3' => 'sly', 'Solyc02g084700.3' => 'sly', 'Solyc03g097520.3' => 'sly', 'Solyc06g071580.3' => 'sly', 'Solyc10g081760.3' => 'sly', 'Sopen01g005480' => 'spe', 'Sopen01g042850' => 'spe', 'Sopen02g029370' => 'spe', 'Sopen03g028280' => 'spe', 'Sopen06g027870' => 'spe', 'Sopen10g032270' => 'spe', 'Sp5g18180' => 'spa', 'Sp6g12880' => 'spa', 'Sp6g30850' => 'spa', 'Sp7g22960' => 'spa', 'Sp7g34010' => 'spa', 'SpUn1326_0010' => 'spa', 'TAR371G0242' => 'tar', 'TAR622G0638' => 'tar', 'TAR628G1548' => 'tar', 'TAR629G1079' => 'tar', 'TAR629G3413' => 'tar', 'THA.LOC104804249' => 'tha', 'THA.LOC104808315' => 'tha', 'THA.LOC104809238' => 'tha', 'THA.LOC104825484' => 'tha', 'Thecc.01G025500' => 'tca', 'Thecc.03G015800' => 'tca', 'Thecc.03G018000' => 'tca', 'Thecc.03G134800' => 'tca', 'Thecc.04G014700' => 'tca', 'Thhalv10006991m.g' => 'esa', 'Thhalv10012707m.g' => 'esa', 'Thhalv10015739m.g' => 'esa', 'Thhalv10024553m.g' => 'esa', 'Thhalv10024673m.g' => 'esa', 'Thhalv10029187m.g' => 'esa', 'TPR.G12971' => 'tpr', 'TPR.G29396' => 'tpr', 'TPR.G33376' => 'tpr', 'TPR.G35508' => 'tpr', 'TPR.G35516' => 'tpr', 'TPR.G37317' => 'tpr', 'TPR.G37389' => 'tpr', 'TPR.G37523' => 'tpr', 'TPR.G559' => 'tpr', 'TWI14G0070' => 'twi', 'TWI14G0729' => 'twi', 'TWI18G0596' => 'twi', 'TWI39G0780' => 'twi', 'TWI39G0850' => 'twi', 'TWI73G1052' => 'twi', 'unitig_52.g17485' => 'ugi', 'unitig_61.g26355' => 'ugi', 'vmacro01040' => 'vma', 'vmacro16731' => 'vma', 'vmacro18270' => 'vma', 'vmacro19142' => 'vma', 'vmacro19407' => 'vma', 'vmacro19408' => 'vma', 'vmacro21899' => 'vma', 'vmacro21900' => 'vma', 'vmacro21901' => 'vma', 'VMungo0251G0490' => 'vmu', 'VMungo0251G1748' => 'vmu', 'VMungo1309G0421' => 'vmu', 'Zm00001eb086500' => 'zma', 'Zm00001eb150680' => 'zma', 'Zm00001eb162330' => 'zma', 'Zm00001eb203130' => 'zma', 'Zm00001eb369480' => 'zma', 'Zm00001eb382340' => 'zma', 'Zm00001eb416360' => 'zma' ) $gf_id = 'HOM05D000902' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000902' ) $data_identifier = 'HOM05D000902' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 13, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 10, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 6, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 9, 'hma' => (int) 12, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 4, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 6, 'ppa' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 6, 'rch' => (int) 9, 'rsi' => (int) 9, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 12, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 3, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416360' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000902', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '663', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02470' => 'bna', 'A01p16260' => 'bna', 'A02p01680' => 'bna', 'A03p16600' => 'bna', 'A03p55660' => 'bna', 'A03p64160' => 'bna', 'A03p64170' => 'bna', 'A08p31900' => 'bna', 'A09p59530' => 'bna', 'A10p08230' => 'bna', 'A10p25090' => 'bna', 'Aa31LG3G7100' => 'aar', 'Aa31LG3G7110' => 'aar', 'Aa31LG6G13160' => 'aar', 'Aa31LG7G10770' => 'aar', 'Aa31LG7G3830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2723' => 'aag', 'Actinidia08045' => 'ach', 'Actinidia08888' => 'ach', 'Actinidia18333' => 'ach', 'Actinidia19334' => 'ach', 'Actinidia25552' => 'ach', 'Actinidia26089' => 'ach', 'Actinidia30615' => 'ach', 'Actinidia30616' => 'ach', 'Actinidia33083' => 'ach', 'Actinidia35762' => 'ach', 'Ah.02g110620' => 'amhyb', 'Ah.11g046390' => 'amhyb', 'AL1G31670' => 'aly', 'AL6G23730' => 'aly', 'AL7G14740' => 'aly', 'AL7G14750' => 'aly', 'AL7G14760' => 'aly', 'AL7G28220' => 'aly', 'AL8G24940' => 'aly', 'Aqoxy3G01665' => 'aox', 'Aqoxy3G02853' => 'aox', 'Aqoxy5G01513' => 'aox', 'Aqoxy5G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8SKA4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ75LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKDA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0LJZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7REX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZP4YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWX7I5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2QKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS0L9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPCD8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q161UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC7XCF' => 'arhy', 'AT1G19100' => 'ath', 'AT4G24970' => 'ath', 'AT4G36270' => 'ath', 'AT4G36280' => 'ath', 'AT4G36290' => 'ath', 'AT5G13130' => 'ath', 'AT5G50780' => 'ath', 'ATR0582G266' => 'atr', 'ATR0661G195' => 'atr', 'ATR1152G031' => 'atr', 'Atru.chr11.2382' => 'acertr', 'Atru.chr12.2337' => 'acertr', 'Atru.chr3.744' => 'acertr', 'Atru.chr6.1870' => 'acertr', 'Atru.chr9.2515' => 'acertr', 'AUR62004120' => 'cqu', 'AUR62005667' => 'cqu', 'AUR62007634' => 'cqu', 'AUR62008186' => 'cqu', 'AUR62008187' => 'cqu', 'AUR62008188' => 'cqu', 'AUR62027954' => 'cqu', 'AUR62028766' => 'cqu', 'AUR62028767' => 'cqu', 'AUR62028768' => 'cqu', 'AUR62028886' => 'cqu', 'AUR62029563' => 'cqu', 'AUR62038832' => 'cqu', 'BcaB01g04149' => 'bca', 'BcaB03g12940' => 'bca', 'BcaB03g13090' => 'bca', 'BcaB03g14466' => 'bca', 'BcaB05g24035' => 'bca', 'BcaC01g06050' => 'bca', 'BcaC04g19148' => 'bca', 'BcaC04g20761' => 'bca', 'BcaC06g32845' => 'bca', 'BcaC07g41274' => 'bca', 'BcaC09g50827' => 'bca', 'BcaNung00741' => 'bca', 'BcaNung00742' => 'bca', 'BcaNung01859' => 'bca', 'BcaNung03985' => 'bca', 'BcaNung03989' => 'bca', 'BcaNung05661' => 'bca', 'BolC1t00257H' => 'bol', 'BolC1t01956H' => 'bol', 'BolC2t06534H' => 'bol', 'BolC3t14334H' => 'bol', 'BolC5t30451H' => 'bol', 'BolC7t45880H' => 'bol', 'BolC7t46586H' => 'bol', 'BolC8t49301H' => 'bol', 'BolC8t51837H' => 'bol', 'BolC9t56822H' => 'bol', 'BolC9t59235H' => 'bol', 'BraA01t00234Z' => 'bra', 'BraA01t01563Z' => 'bra', 'BraA02t05147Z' => 'bra', 'BraA03t10947Z' => 'bra', 'BraA03t14633Z' => 'bra', 'BraA08t35112Z' => 'bra', 'BraA09t41330Z' => 'bra', 'BraA10t44570Z' => 'bra', 'C01p02670' => 'bna', 'C01p20260' => 'bna', 'C02p05890' => 'bna', 'C03p19530' => 'bna', 'C05p17470' => 'bna', 'C07p53900' => 'bna', 'C07p61630' => 'bna', 'C08p16800' => 'bna', 'C08p42810' => 'bna', 'C09p39480' => 'bna', 'C09p63980' => 'bna', 'CAN.G1001.7' => 'can', 'CAN.G1034.55' => 'can', 'CAN.G143.7' => 'can', 'CAN.G3340.1' => 'can', 'CAN.G358.19' => 'can', 'CAN.G373.2' => 'can', 'CAN.G674.16' => 'can', 'CAN.G674.17' => 'can', 'CAN.G674.18' => 'can', 'CAN.G732.2' => 'can', 'CAN.G732.3' => 'can', 'CAN.G993.39' => 'can', 'CANSAT01G2052' => 'cansat', 'CANSAT80G0070' => 'cansat', 'CANSAT80G0483' => 'cansat', 'CANSAT80G0625' => 'cansat', 'CARHR019690' => 'chi', 'CARHR080280' => 'chi', 'CARHR152750' => 'chi', 'CARHR152760' => 'chi', 'CARHR152770' => 'chi', 'CARHR200340' => 'chi', 'CARHR232370' => 'chi', 'CARHR244670' => 'chi', 'CARHR244680' => 'chi', 'CARHR257520' => 'chi', 'Carub.0001s1872' => 'cru', 'Carub.0006s1130' => 'cru', 'Carub.0007s0396' => 'cru', 'Carub.0007s0397' => 'cru', 'Carub.0007s1608' => 'cru', 'Carub.0008s1068' => 'cru', 'Carub.0008s1077' => 'cru', 'Ca_16158_v3' => 'car', 'Ca_17571_v3' => 'car', 'Ca_21936_v3' => 'car', 'Ca_22350_v3' => 'car', 'CBR_g22445' => 'cbr', 'CBR_g26290' => 'cbr', 'Cc04_g09610' => 'ccan', 'Cc04_g12280' => 'ccan', 'Cc07_g10230' => 'ccan', 'CDE02G0093' => 'cde', 'CDE02G0701' => 'cde', 'CDE04G1050' => 'cde', 'CDE05G1833' => 'cde', 'CDE05G3058' => 'cde', 'CDE05G3380' => 'cde', 'CDE06G0536' => 'cde', 'Cfa006923' => 'cfa', 'Cfa009402' => 'cfa', 'Cfa018751' => 'cfa', 'Cfa019164' => 'cfa', 'Cfa022935' => 'cfa', 'Ciclev10019081m.g' => 'ccl', 'Ciclev10025076m.g' => 'ccl', 'Ciclev10030712m.g' => 'ccl', 'Ciclev10033760m.g' => 'ccl', 'CiPaw.05G105600' => 'cil', 'CiPaw.08G136700' => 'cil', 'CiPaw.11G003900' => 'cil', 'CiPaw.11G023700' => 'cil', 'CiPaw.12G003700' => 'cil', 'ClCG06G017100' => 'cla', 'ClCG06G018110' => 'cla', 'ClCG07G008800' => 'cla', 'ClCG07G015330' => 'cla', 'COL.COLO4_13698' => 'col', 'COL.COLO4_16659' => 'col', 'COL.COLO4_21986' => 'col', 'COL.COLO4_24049' => 'col', 'COL.COLO4_29061' => 'col', 'COL.COLO4_29075' => 'col', 'COL.COLO4_30094' => 'col', 'Cpa.g.c33689' => 'cpa', 'Cpa.g.sc108.39' => 'cpa', 'Cpa.g.sc108.41' => 'cpa', 'Cpa.g.sc1163.1' => 'cpa', 'Cpa.g.sc4.155' => 'cpa', 'Cpa.g.sc6.194' => 'cpa', 'CsaV3_1G000340' => 'csa', 'CsaV3_1G001400' => 'csa', 'CsaV3_4G002220' => 'csa', 'CsaV3_4G005370' => 'csa', 'CSS0007487' => 'camsi', 'CSS0008066' => 'camsi', 'CSS0009120' => 'camsi', 'CSS0015512' => 'camsi', 'CSS0022409' => 'camsi', 'CSS0025358' => 'camsi', 'CSS0044547' => 'camsi', 'DCAR_013057' => 'dca', 'DCAR_015058' => 'dca', 'DCAR_016027' => 'dca', 'DCAR_017327' => 'dca', 'DCAR_020743' => 'dca', 'DCAR_026157' => 'dca', 'DCAR_032339' => 'dca', 'DCAR_032340' => 'dca', 'Dinv11200' => 'din', 'Dinv11201' => 'din', 'Dinv20631' => 'din', 'Dinv23182' => 'din', 'Dinv33466' => 'din', 'Dinv33583' => 'din', 'Dinv38565' => 'din', 'Duzib068G0200' => 'dzi', 'Duzib147G0132' => 'dzi', 'Duzib147G0635' => 'dzi', 'Duzib205G1670' => 'dzi', 'Duzib251G0606' => 'dzi', 'ECA232G3336' => 'eca', 'ECA232G3763' => 'eca', 'ECA232G4845' => 'eca', 'ECA234G1607' => 'eca', 'ECA246G0932' => 'eca', 'ECA247G0781' => 'eca', 'ECA247G1932' => 'eca', 'ECA247G2079' => 'eca', 'ECA247G3338' => 'eca', 'ECA247G4115' => 'eca', 'EL10Ac3g06552' => 'bvu', 'EL10Ac5g10721' => 'bvu', 'EL10Ac5g10722' => 'bvu', 'EL10Ac5g10723' => 'bvu', 'EL10Ac5g11361' => 'bvu', 'EL10Ac6g13553' => 'bvu', 'EL10As8g23872' => 'bvu', 'Eucgr.B00250' => 'egr', 'Eucgr.B00251' => 'egr', 'Eucgr.B03533' => 'egr', 'Eucgr.I02381' => 'egr', 'Eucgr.K02700' => 'egr', 'FAN02G0174' => 'fan', 'FAN02G3146' => 'fan', 'FAN04G1672' => 'fan', 'FAN04G2273' => 'fan', 'FAN05G2791' => 'fan', 'FAN05G4035' => 'fan', 'FAN07G0834' => 'fan', 'FAN08G1198' => 'fan', 'FAN09G4182' => 'fan', 'FAN12G0496' => 'fan', 'FAN13G1027' => 'fan', 'FAN13G2951' => 'fan', 'FAN14G0705' => 'fan', 'FAN14G0720' => 'fan', 'FAN17G0201' => 'fan', 'FAN17G2665' => 'fan', 'FAN18G1456' => 'fan', 'FAN18G1525' => 'fan', 'FAN18G3500' => 'fan', 'FAN28G2670' => 'fan', 'FvH4_1g12391' => 'fve', 'FvH4_4g23220' => 'fve', 'FvH4_5g08810' => 'fve', 'FvH4_5g28960' => 'fve', 'FvH4_6g42820' => 'fve', 'FvH4_6g51110' => 'fve', 'Glyma.02G051802' => 'gma', 'Glyma.04G185300' => 'gma', 'Glyma.05G202900' => 'gma', 'Glyma.08G010300' => 'gma', 'Glyma.16G131900' => 'gma', 'Glyma.17G087900' => 'gma', 'Gohir.A07G048600' => 'ghi', 'Gohir.A11G179000' => 'ghi', 'Gohir.A12G140900' => 'ghi', 'Gohir.A12G140950' => 'ghi', 'Gohir.A12G191700' => 'ghi', 'Gohir.A13G086300' => 'ghi', 'Gohir.D07G052900' => 'ghi', 'Gohir.D11G186600' => 'ghi', 'Gohir.D12G145575' => 'ghi', 'Gohir.D12G145650' => 'ghi', 'Gohir.D12G145725' => 'ghi', 'Gohir.D12G194050' => 'ghi', 'Gohir.D13G091800' => 'ghi', 'Gorai.001G055900' => 'gra', 'Gorai.007G198400' => 'gra', 'Gorai.008G157000' => 'gra', 'Gorai.008G157100' => 'gra', 'Gorai.008G208700' => 'gra', 'Gorai.010G138700' => 'gra', 'GSVIVG01000977001' => 'vvi', 'GSVIVG01007708001' => 'vvi', 'GSVIVG01008587001' => 'vvi', 'GSVIVG01018849001' => 'vvi', 'GSVIVG01032432001' => 'vvi', 'HanXRQChr02g0034131' => 'han', 'HanXRQChr02g0035981' => 'han', 'HanXRQChr02g0035991' => 'han', 'HanXRQChr05g0155611' => 'han', 'HanXRQChr05g0155621' => 'han', 'HanXRQChr08g0236501' => 'han', 'HanXRQChr09g0261321' => 'han', 'HanXRQChr09g0272081' => 'han', 'HanXRQChr10g0310741' => 'han', 'HanXRQChr11g0325591' => 'han', 'HanXRQChr12g0385691' => 'han', 'HanXRQChr13g0387801' => 'han', 'HanXRQChr15g0463011' => 'han', 'Haze_03826' => 'cav', 'Haze_03827' => 'cav', 'Haze_07183' => 'cav', 'Haze_07537' => 'cav', 'Haze_07539' => 'cav', 'Haze_12461' => 'cav', 'Haze_16115' => 'cav', 'Haze_16808' => 'cav', 'Haze_18531' => 'cav', 'Hma1.2p1_0046F.1_g026700' => 'hma', 'Hma1.2p1_0046F.1_g026710' => 'hma', 'Hma1.2p1_0168F.1_g074340' => 'hma', 'Hma1.2p1_0266F.1_g107030' => 'hma', 'Hma1.2p1_0266F.1_g107060' => 'hma', 'Hma1.2p1_0275F.1_g110510' => 'hma', 'Hma1.2p1_0592F.1_g185490' => 'hma', 'Hma1.2p1_0592F.1_g185500' => 'hma', 'Hma1.2p1_0592F.1_g185510' => 'hma', 'Hma1.2p1_0592F.1_g185520' => 'hma', 'Hma1.2p1_0592F.1_g185530' => 'hma', 'Hma1.2p1_0818F.1_g223450' => 'hma', 'HPP92_009708' => 'vpl', 'HPP92_009793' => 'vpl', 'HPP92_009796' => 'vpl', 'HPP92_009797' => 'vpl', 'HPP92_014940' => 'vpl', 'HPP92_014988' => 'vpl', 'Hund02463' => 'sun', 'Hund02760' => 'sun', 'Hund05071' => 'sun', 'Hund10108' => 'sun', 'Hund11204' => 'sun', 'Hund14016' => 'sun', 'Hund16464' => 'sun', 'Lalb_Chr09g0333391' => 'lal', 'Lalb_Chr11g0070461' => 'lal', 'Lalb_Chr12g0201671' => 'lal', 'Lalb_Chr13g0297161' => 'lal', 'Lj1g0002823' => 'lja', 'Lj3C1074T6' => 'lonja', 'Lj4A212T28' => 'lonja', 'Lj4g0005516' => 'lja', 'Lj4g0013705' => 'lja', 'Lj4g0027865' => 'lja', 'Lj5C92G16' => 'lonja', 'Lj5C92T12' => 'lonja', 'Lj7C596T3' => 'lonja', 'Lj9A446G59' => 'lonja', 'Lj9A482G21' => 'lonja', 'Lsat_1_v5_gn_1_28261' => 'lsa', 'Lsat_1_v5_gn_1_28281' => 'lsa', 'Lsat_1_v5_gn_1_32721' => 'lsa', 'Lsat_1_v5_gn_4_151760' => 'lsa', 'Lsat_1_v5_gn_4_2120' => 'lsa', 'Lsat_1_v5_gn_4_75761' => 'lsa', 'Lsat_1_v5_gn_5_10920' => 'lsa', 'Manes.02G099900' => 'mes', 'Manes.11G096200' => 'mes', 'Manes.12G007200' => 'mes', 'Manes.14G048300' => 'mes', 'Manes.17G114700' => 'mes', 'Mapoly0002s0070' => 'mpo', 'Mapoly0029s0099' => 'mpo', 'MBI07_g24742_MAGBIO' => 'mbi', 'MBI10_g27988_MAGBIO' => 'mbi', 'MBI11_g13057_MAGBIO' => 'mbi', 'MD02G1137200' => 'mdo', 'MD06G1137200' => 'mdo', 'MD07G1122300' => 'mdo', 'MD09G1078200' => 'mdo', 'MD13G1123700' => 'mdo', 'MD14G1151900' => 'mdo', 'MD17G1030900' => 'mdo', 'MD17G1068200' => 'mdo', 'MD17G1068600' => 'mdo', 'Medtr3g077540' => 'mtr', 'Medtr4g105530' => 'mtr', 'Medtr8g076580' => 'mtr', 'Medtr8g076590' => 'mtr', 'Medtr8g096410' => 'mtr', 'MELO3C016411.2' => 'cme', 'MELO3C017780.2' => 'cme', 'MELO3C022560.2' => 'cme', 'MELO3C026187.2' => 'cme', 'MELO3C026286.2' => 'cme', 'MELO3C032854.2' => 'cme', 'Migut.H02495' => 'egut', 'Migut.I00561' => 'egut', 'Migut.K01015' => 'egut', 'Migut.K01016' => 'egut', 'Migut.L00743' => 'egut', 'Migut.L00744' => 'egut', 'Migut.L00746' => 'egut', 'Migut.L00798' => 'egut', 'Migut.L00799' => 'egut', 'Migut.N02096' => 'egut', 'MSTRG.11259' => 'ama', 'MSTRG.23142' => 'ama', 'MSTRG.2499' => 'ama', 'Nitab4.5_0000003g0730' => 'nta', 'Nitab4.5_0000137g0020' => 'nta', 'Nitab4.5_0000721g0210' => 'nta', 'Nitab4.5_0000723g0050' => 'nta', 'Nitab4.5_0000913g0070' => 'nta', 'Nitab4.5_0001332g0040' => 'nta', 'Nitab4.5_0001771g0050' => 'nta', 'Nitab4.5_0001918g0050' => 'nta', 'Nitab4.5_0002686g0030' => 'nta', 'Nitab4.5_0003156g0020' => 'nta', 'Nitab4.5_0003383g0040' => 'nta', 'Nitab4.5_0003918g0010' => 'nta', 'Nitab4.5_0006760g0010' => 'nta', 'Nn1g05981' => 'nnu', 'Nn1g06288' => 'nnu', 'Nn3g16371' => 'nnu', 'Nn3g16786' => 'nnu', 'Nn4g22232' => 'nnu', 'Oeu005144.1' => 'oeu', 'Oeu005145.1' => 'oeu', 'Oeu011348.1' => 'oeu', 'Oeu016415.1' => 'oeu', 'Oeu023501.1' => 'oeu', 'Oeu044473.1' => 'oeu', 'Oeu048892.2' => 'oeu', 'Os01g0549200' => 'osa', 'Os02g0469300' => 'osa', 'Os04g0311100' => 'osa', 'Os06g0474900' => 'osa', 'Os10g0181700' => 'osa', 'Os11g0454800' => 'osa', 'Peaxi162Scf00037g00714' => 'pax', 'Peaxi162Scf00084g01217' => 'pax', 'Peaxi162Scf00257g00217' => 'pax', 'Peaxi162Scf00516g00215' => 'pax', 'Peaxi162Scf00689g00123' => 'pax', 'PGR044G2719' => 'pgr', 'PGR083G1360' => 'pgr', 'PGR102G2849' => 'pgr', 'PGR119G2534' => 'pgr', 'PGSC0003DMG400003538' => 'stu', 'PGSC0003DMG400028138' => 'stu', 'PGSC0003DMG400031732' => 'stu', 'PGSC0003DMG400038165' => 'stu', 'Phvul.002G284600' => 'pvu', 'Phvul.003G258200' => 'pvu', 'Phvul.009G176500' => 'pvu', 'Potri.003G167201' => 'ptr', 'Potri.005G118400' => 'ptr', 'Potri.012G089000' => 'ptr', 'Potri.012G102800' => 'ptr', 'Potri.015G079400' => 'ptr', 'Potri.015G100900' => 'ptr', 'Pp3c14_9810' => 'ppa', 'Pp3c15_10450' => 'ppa', 'Pp3c20_19150' => 'ppa', 'Pp3c23_12740' => 'ppa', 'Pp3c23_6310' => 'ppa', 'Pp3c24_3720' => 'ppa', 'Pp3c27_2580' => 'ppa', 'Pp3c9_8990' => 'ppa', 'PRCOL_00002854' => 'pco', 'Prupe.1G221200' => 'ppe', 'Prupe.3G289000' => 'ppe', 'Prupe.5G147000' => 'ppe', 'Prupe.6G157300' => 'ppe', 'Prupe.7G163400' => 'ppe', 'Psat0s2177g0040' => 'psa', 'Psat3g174760' => 'psa', 'Psat3g192160' => 'psa', 'Psat4g058520' => 'psa', 'Psat4g096840' => 'psa', 'Psat7g037320' => 'psa', 'PSO017G1274' => 'pso', 'PSO017G5166' => 'pso', 'PSO063G4558' => 'pso', 'PSO170G4458' => 'pso', 'PSO170G5005' => 'pso', 'PSO210G6156' => 'pso', 'PSO210G6635' => 'pso', 'PSO210G7397' => 'pso', 'PSO210G7700' => 'pso', 'PSO455G0035' => 'pso', 'PSO455G0180' => 'pso', 'PSO478G4515' => 'pso', 'PSO832G1305' => 'pso', 'PSO832G3489' => 'pso', 'QL02p075247' => 'qlo', 'QL03p051148' => 'qlo', 'QL05p010313' => 'qlo', 'QL06p034627' => 'qlo', 'QL10p001889' => 'qlo', 'QL10p010846' => 'qlo', 'RcHm_v2.0_Chr1g0350621' => 'rch', 'RcHm_v2.0_Chr1g0350641' => 'rch', 'RcHm_v2.0_Chr2g0092891' => 'rch', 'RcHm_v2.0_Chr2g0100251' => 'rch', 'RcHm_v2.0_Chr2g0158661' => 'rch', 'RcHm_v2.0_Chr2g0172741' => 'rch', 'RcHm_v2.0_Chr4g0429571' => 'rch', 'RcHm_v2.0_Chr5g0042471' => 'rch', 'RcHm_v2.0_Chr7g0189451' => 'rch', 'Rhsim08G0052000' => 'rsi', 'Rhsim08G0174400' => 'rsi', 'Rhsim08G0193200' => 'rsi', 'Rhsim10G0214800' => 'rsi', 'Rhsim10G0214900' => 'rsi', 'Rhsim10G0215000' => 'rsi', 'Rhsim12G0022900' => 'rsi', 'Rhsim12G0177500' => 'rsi', 'Rhsim12G0177700' => 'rsi', 'Sabra03G0122600' => 'sbr', 'Sabra05G0097400' => 'sbr', 'Sabra12G0064100' => 'sbr', 'Sabra15G0121300' => 'sbr', 'SalBow2G0642' => 'sbo', 'SalBow5G2667' => 'sbo', 'SalBow5G4873' => 'sbo', 'SalBow8G2395' => 'sbo', 'Sc03g0003290' => 'sci', 'Sc10g0010130' => 'sci', 'Sc22g0003650' => 'sci', 'Sed0001603' => 'sed', 'Sed0004259' => 'sed', 'Sed0006789' => 'sed', 'Sed0011838' => 'sed', 'Sed0012964' => 'sed', 'Sed0016383' => 'sed', 'Sed0019010' => 'sed', 'Sed0020188' => 'sed', 'SEGI_04702' => 'sgi', 'SEGI_17231' => 'sgi', 'SEGI_18877' => 'sgi', 'SEGI_25196' => 'sgi', 'SEGI_25515' => 'sgi', 'SEGI_28445' => 'sgi', 'SEGI_37452' => 'sgi', 'SGA_v2.0_scaffold188G40336' => 'sas', 'SGA_v2.0_scaffold228G43247' => 'sas', 'SGA_v2.0_scaffold280G46853' => 'sas', 'SGA_v2.0_scaffold34G13808' => 'sas', 'SGA_v2.0_scaffold40G15576' => 'sas', 'SGA_v2.0_scaffold611G53188' => 'sas', 'SGA_v2.0_scaffold78G25461' => 'sas', 'SGA_v2.0_scaffold90G27888' => 'sas', 'SHI08601' => 'shi', 'SHI08606' => 'shi', 'SHI17117' => 'shi', 'SHI17119' => 'shi', 'SMO118G0201' => 'smo', 'SMO169G0247' => 'smo', 'SMO176G0006' => 'smo', 'SMO176G0015' => 'smo', 'SMO202G0006' => 'smo', 'SMO240G0050' => 'smo', 'SMO286G0009' => 'smo', 'SMO338G0033' => 'smo', 'SMO356G0533' => 'smo', 'SMO364G0382' => 'smo', 'SMO367G0166' => 'smo', 'SMO367G1098' => 'smo', 'Solyc01g009920.3' => 'sly', 'Solyc01g099300.3' => 'sly', 'Solyc02g084700.3' => 'sly', 'Solyc03g097520.3' => 'sly', 'Solyc06g071580.3' => 'sly', 'Solyc10g081760.3' => 'sly', 'Sopen01g005480' => 'spe', 'Sopen01g042850' => 'spe', 'Sopen02g029370' => 'spe', 'Sopen03g028280' => 'spe', 'Sopen06g027870' => 'spe', 'Sopen10g032270' => 'spe', 'Sp5g18180' => 'spa', 'Sp6g12880' => 'spa', 'Sp6g30850' => 'spa', 'Sp7g22960' => 'spa', 'Sp7g34010' => 'spa', 'SpUn1326_0010' => 'spa', 'TAR371G0242' => 'tar', 'TAR622G0638' => 'tar', 'TAR628G1548' => 'tar', 'TAR629G1079' => 'tar', 'TAR629G3413' => 'tar', 'THA.LOC104804249' => 'tha', 'THA.LOC104808315' => 'tha', 'THA.LOC104809238' => 'tha', 'THA.LOC104825484' => 'tha', 'Thecc.01G025500' => 'tca', 'Thecc.03G015800' => 'tca', 'Thecc.03G018000' => 'tca', 'Thecc.03G134800' => 'tca', 'Thecc.04G014700' => 'tca', 'Thhalv10006991m.g' => 'esa', 'Thhalv10012707m.g' => 'esa', 'Thhalv10015739m.g' => 'esa', 'Thhalv10024553m.g' => 'esa', 'Thhalv10024673m.g' => 'esa', 'Thhalv10029187m.g' => 'esa', 'TPR.G12971' => 'tpr', 'TPR.G29396' => 'tpr', 'TPR.G33376' => 'tpr', 'TPR.G35508' => 'tpr', 'TPR.G35516' => 'tpr', 'TPR.G37317' => 'tpr', 'TPR.G37389' => 'tpr', 'TPR.G37523' => 'tpr', 'TPR.G559' => 'tpr', 'TWI14G0070' => 'twi', 'TWI14G0729' => 'twi', 'TWI18G0596' => 'twi', 'TWI39G0780' => 'twi', 'TWI39G0850' => 'twi', 'TWI73G1052' => 'twi', 'unitig_52.g17485' => 'ugi', 'unitig_61.g26355' => 'ugi', 'vmacro01040' => 'vma', 'vmacro16731' => 'vma', 'vmacro18270' => 'vma', 'vmacro19142' => 'vma', 'vmacro19407' => 'vma', 'vmacro19408' => 'vma', 'vmacro21899' => 'vma', 'vmacro21900' => 'vma', 'vmacro21901' => 'vma', 'VMungo0251G0490' => 'vmu', 'VMungo0251G1748' => 'vmu', 'VMungo1309G0421' => 'vmu', 'Zm00001eb086500' => 'zma', 'Zm00001eb150680' => 'zma', 'Zm00001eb162330' => 'zma', 'Zm00001eb203130' => 'zma', 'Zm00001eb369480' => 'zma', 'Zm00001eb382340' => 'zma', 'Zm00001eb416360' => 'zma' ), 'gf_id' => 'HOM05D000902', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000902' ), 'data_identifier' => 'HOM05D000902', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000902', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '663', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02470' => 'bna', 'A01p16260' => 'bna', 'A02p01680' => 'bna', 'A03p16600' => 'bna', 'A03p55660' => 'bna', 'A03p64160' => 'bna', 'A03p64170' => 'bna', 'A08p31900' => 'bna', 'A09p59530' => 'bna', 'A10p08230' => 'bna', 'A10p25090' => 'bna', 'Aa31LG3G7100' => 'aar', 'Aa31LG3G7110' => 'aar', 'Aa31LG6G13160' => 'aar', 'Aa31LG7G10770' => 'aar', 'Aa31LG7G3830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2723' => 'aag', 'Actinidia08045' => 'ach', 'Actinidia08888' => 'ach', 'Actinidia18333' => 'ach', 'Actinidia19334' => 'ach', 'Actinidia25552' => 'ach', 'Actinidia26089' => 'ach', 'Actinidia30615' => 'ach', 'Actinidia30616' => 'ach', 'Actinidia33083' => 'ach', 'Actinidia35762' => 'ach', 'Ah.02g110620' => 'amhyb', 'Ah.11g046390' => 'amhyb', 'AL1G31670' => 'aly', 'AL6G23730' => 'aly', 'AL7G14740' => 'aly', 'AL7G14750' => 'aly', 'AL7G14760' => 'aly', 'AL7G28220' => 'aly', 'AL8G24940' => 'aly', 'Aqoxy3G01665' => 'aox', 'Aqoxy3G02853' => 'aox', 'Aqoxy5G01513' => 'aox', 'Aqoxy5G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8SKA4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ75LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKDA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0LJZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7REX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZP4YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWX7I5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2QKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS0L9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPCD8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q161UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC7XCF' => 'arhy', 'AT1G19100' => 'ath', 'AT4G24970' => 'ath', 'AT4G36270' => 'ath', 'AT4G36280' => 'ath', 'AT4G36290' => 'ath', 'AT5G13130' => 'ath', 'AT5G50780' => 'ath', 'ATR0582G266' => 'atr', 'ATR0661G195' => 'atr', 'ATR1152G031' => 'atr', 'Atru.chr11.2382' => 'acertr', 'Atru.chr12.2337' => 'acertr', 'Atru.chr3.744' => 'acertr', 'Atru.chr6.1870' => 'acertr', 'Atru.chr9.2515' => 'acertr', 'AUR62004120' => 'cqu', 'AUR62005667' => 'cqu', 'AUR62007634' => 'cqu', 'AUR62008186' => 'cqu', 'AUR62008187' => 'cqu', 'AUR62008188' => 'cqu', 'AUR62027954' => 'cqu', 'AUR62028766' => 'cqu', 'AUR62028767' => 'cqu', 'AUR62028768' => 'cqu', 'AUR62028886' => 'cqu', 'AUR62029563' => 'cqu', 'AUR62038832' => 'cqu', 'BcaB01g04149' => 'bca', 'BcaB03g12940' => 'bca', 'BcaB03g13090' => 'bca', 'BcaB03g14466' => 'bca', 'BcaB05g24035' => 'bca', 'BcaC01g06050' => 'bca', 'BcaC04g19148' => 'bca', 'BcaC04g20761' => 'bca', 'BcaC06g32845' => 'bca', 'BcaC07g41274' => 'bca', 'BcaC09g50827' => 'bca', 'BcaNung00741' => 'bca', 'BcaNung00742' => 'bca', 'BcaNung01859' => 'bca', 'BcaNung03985' => 'bca', 'BcaNung03989' => 'bca', 'BcaNung05661' => 'bca', 'BolC1t00257H' => 'bol', 'BolC1t01956H' => 'bol', 'BolC2t06534H' => 'bol', 'BolC3t14334H' => 'bol', 'BolC5t30451H' => 'bol', 'BolC7t45880H' => 'bol', 'BolC7t46586H' => 'bol', 'BolC8t49301H' => 'bol', 'BolC8t51837H' => 'bol', 'BolC9t56822H' => 'bol', 'BolC9t59235H' => 'bol', 'BraA01t00234Z' => 'bra', 'BraA01t01563Z' => 'bra', 'BraA02t05147Z' => 'bra', 'BraA03t10947Z' => 'bra', 'BraA03t14633Z' => 'bra', 'BraA08t35112Z' => 'bra', 'BraA09t41330Z' => 'bra', 'BraA10t44570Z' => 'bra', 'C01p02670' => 'bna', 'C01p20260' => 'bna', 'C02p05890' => 'bna', 'C03p19530' => 'bna', 'C05p17470' => 'bna', 'C07p53900' => 'bna', 'C07p61630' => 'bna', 'C08p16800' => 'bna', 'C08p42810' => 'bna', 'C09p39480' => 'bna', 'C09p63980' => 'bna', 'CAN.G1001.7' => 'can', 'CAN.G1034.55' => 'can', 'CAN.G143.7' => 'can', 'CAN.G3340.1' => 'can', 'CAN.G358.19' => 'can', 'CAN.G373.2' => 'can', 'CAN.G674.16' => 'can', 'CAN.G674.17' => 'can', 'CAN.G674.18' => 'can', 'CAN.G732.2' => 'can', 'CAN.G732.3' => 'can', 'CAN.G993.39' => 'can', 'CANSAT01G2052' => 'cansat', 'CANSAT80G0070' => 'cansat', 'CANSAT80G0483' => 'cansat', 'CANSAT80G0625' => 'cansat', 'CARHR019690' => 'chi', 'CARHR080280' => 'chi', 'CARHR152750' => 'chi', 'CARHR152760' => 'chi', 'CARHR152770' => 'chi', 'CARHR200340' => 'chi', 'CARHR232370' => 'chi', 'CARHR244670' => 'chi', 'CARHR244680' => 'chi', 'CARHR257520' => 'chi', 'Carub.0001s1872' => 'cru', 'Carub.0006s1130' => 'cru', 'Carub.0007s0396' => 'cru', 'Carub.0007s0397' => 'cru', 'Carub.0007s1608' => 'cru', 'Carub.0008s1068' => 'cru', 'Carub.0008s1077' => 'cru', 'Ca_16158_v3' => 'car', 'Ca_17571_v3' => 'car', 'Ca_21936_v3' => 'car', 'Ca_22350_v3' => 'car', 'CBR_g22445' => 'cbr', 'CBR_g26290' => 'cbr', 'Cc04_g09610' => 'ccan', 'Cc04_g12280' => 'ccan', 'Cc07_g10230' => 'ccan', 'CDE02G0093' => 'cde', 'CDE02G0701' => 'cde', 'CDE04G1050' => 'cde', 'CDE05G1833' => 'cde', 'CDE05G3058' => 'cde', 'CDE05G3380' => 'cde', 'CDE06G0536' => 'cde', 'Cfa006923' => 'cfa', 'Cfa009402' => 'cfa', 'Cfa018751' => 'cfa', 'Cfa019164' => 'cfa', 'Cfa022935' => 'cfa', 'Ciclev10019081m.g' => 'ccl', 'Ciclev10025076m.g' => 'ccl', 'Ciclev10030712m.g' => 'ccl', 'Ciclev10033760m.g' => 'ccl', 'CiPaw.05G105600' => 'cil', 'CiPaw.08G136700' => 'cil', 'CiPaw.11G003900' => 'cil', 'CiPaw.11G023700' => 'cil', 'CiPaw.12G003700' => 'cil', 'ClCG06G017100' => 'cla', 'ClCG06G018110' => 'cla', 'ClCG07G008800' => 'cla', 'ClCG07G015330' => 'cla', 'COL.COLO4_13698' => 'col', 'COL.COLO4_16659' => 'col', 'COL.COLO4_21986' => 'col', 'COL.COLO4_24049' => 'col', 'COL.COLO4_29061' => 'col', 'COL.COLO4_29075' => 'col', 'COL.COLO4_30094' => 'col', 'Cpa.g.c33689' => 'cpa', 'Cpa.g.sc108.39' => 'cpa', 'Cpa.g.sc108.41' => 'cpa', 'Cpa.g.sc1163.1' => 'cpa', 'Cpa.g.sc4.155' => 'cpa', 'Cpa.g.sc6.194' => 'cpa', 'CsaV3_1G000340' => 'csa', 'CsaV3_1G001400' => 'csa', 'CsaV3_4G002220' => 'csa', 'CsaV3_4G005370' => 'csa', 'CSS0007487' => 'camsi', 'CSS0008066' => 'camsi', 'CSS0009120' => 'camsi', 'CSS0015512' => 'camsi', 'CSS0022409' => 'camsi', 'CSS0025358' => 'camsi', 'CSS0044547' => 'camsi', 'DCAR_013057' => 'dca', 'DCAR_015058' => 'dca', 'DCAR_016027' => 'dca', 'DCAR_017327' => 'dca', 'DCAR_020743' => 'dca', 'DCAR_026157' => 'dca', 'DCAR_032339' => 'dca', 'DCAR_032340' => 'dca', 'Dinv11200' => 'din', 'Dinv11201' => 'din', 'Dinv20631' => 'din', 'Dinv23182' => 'din', 'Dinv33466' => 'din', 'Dinv33583' => 'din', 'Dinv38565' => 'din', 'Duzib068G0200' => 'dzi', 'Duzib147G0132' => 'dzi', 'Duzib147G0635' => 'dzi', 'Duzib205G1670' => 'dzi', 'Duzib251G0606' => 'dzi', 'ECA232G3336' => 'eca', 'ECA232G3763' => 'eca', 'ECA232G4845' => 'eca', 'ECA234G1607' => 'eca', 'ECA246G0932' => 'eca', 'ECA247G0781' => 'eca', 'ECA247G1932' => 'eca', 'ECA247G2079' => 'eca', 'ECA247G3338' => 'eca', 'ECA247G4115' => 'eca', 'EL10Ac3g06552' => 'bvu', 'EL10Ac5g10721' => 'bvu', 'EL10Ac5g10722' => 'bvu', 'EL10Ac5g10723' => 'bvu', 'EL10Ac5g11361' => 'bvu', 'EL10Ac6g13553' => 'bvu', 'EL10As8g23872' => 'bvu', 'Eucgr.B00250' => 'egr', 'Eucgr.B00251' => 'egr', 'Eucgr.B03533' => 'egr', 'Eucgr.I02381' => 'egr', 'Eucgr.K02700' => 'egr', 'FAN02G0174' => 'fan', 'FAN02G3146' => 'fan', 'FAN04G1672' => 'fan', 'FAN04G2273' => 'fan', 'FAN05G2791' => 'fan', 'FAN05G4035' => 'fan', 'FAN07G0834' => 'fan', 'FAN08G1198' => 'fan', 'FAN09G4182' => 'fan', 'FAN12G0496' => 'fan', 'FAN13G1027' => 'fan', 'FAN13G2951' => 'fan', 'FAN14G0705' => 'fan', 'FAN14G0720' => 'fan', 'FAN17G0201' => 'fan', 'FAN17G2665' => 'fan', 'FAN18G1456' => 'fan', 'FAN18G1525' => 'fan', 'FAN18G3500' => 'fan', 'FAN28G2670' => 'fan', 'FvH4_1g12391' => 'fve', 'FvH4_4g23220' => 'fve', 'FvH4_5g08810' => 'fve', 'FvH4_5g28960' => 'fve', 'FvH4_6g42820' => 'fve', 'FvH4_6g51110' => 'fve', 'Glyma.02G051802' => 'gma', 'Glyma.04G185300' => 'gma', 'Glyma.05G202900' => 'gma', 'Glyma.08G010300' => 'gma', 'Glyma.16G131900' => 'gma', 'Glyma.17G087900' => 'gma', 'Gohir.A07G048600' => 'ghi', 'Gohir.A11G179000' => 'ghi', 'Gohir.A12G140900' => 'ghi', 'Gohir.A12G140950' => 'ghi', 'Gohir.A12G191700' => 'ghi', 'Gohir.A13G086300' => 'ghi', 'Gohir.D07G052900' => 'ghi', 'Gohir.D11G186600' => 'ghi', 'Gohir.D12G145575' => 'ghi', 'Gohir.D12G145650' => 'ghi', 'Gohir.D12G145725' => 'ghi', 'Gohir.D12G194050' => 'ghi', 'Gohir.D13G091800' => 'ghi', 'Gorai.001G055900' => 'gra', 'Gorai.007G198400' => 'gra', 'Gorai.008G157000' => 'gra', 'Gorai.008G157100' => 'gra', 'Gorai.008G208700' => 'gra', 'Gorai.010G138700' => 'gra', 'GSVIVG01000977001' => 'vvi', 'GSVIVG01007708001' => 'vvi', 'GSVIVG01008587001' => 'vvi', 'GSVIVG01018849001' => 'vvi', 'GSVIVG01032432001' => 'vvi', 'HanXRQChr02g0034131' => 'han', 'HanXRQChr02g0035981' => 'han', 'HanXRQChr02g0035991' => 'han', 'HanXRQChr05g0155611' => 'han', 'HanXRQChr05g0155621' => 'han', 'HanXRQChr08g0236501' => 'han', 'HanXRQChr09g0261321' => 'han', 'HanXRQChr09g0272081' => 'han', 'HanXRQChr10g0310741' => 'han', 'HanXRQChr11g0325591' => 'han', 'HanXRQChr12g0385691' => 'han', 'HanXRQChr13g0387801' => 'han', 'HanXRQChr15g0463011' => 'han', 'Haze_03826' => 'cav', 'Haze_03827' => 'cav', 'Haze_07183' => 'cav', 'Haze_07537' => 'cav', 'Haze_07539' => 'cav', 'Haze_12461' => 'cav', 'Haze_16115' => 'cav', 'Haze_16808' => 'cav', 'Haze_18531' => 'cav', 'Hma1.2p1_0046F.1_g026700' => 'hma', 'Hma1.2p1_0046F.1_g026710' => 'hma', 'Hma1.2p1_0168F.1_g074340' => 'hma', 'Hma1.2p1_0266F.1_g107030' => 'hma', 'Hma1.2p1_0266F.1_g107060' => 'hma', 'Hma1.2p1_0275F.1_g110510' => 'hma', 'Hma1.2p1_0592F.1_g185490' => 'hma', 'Hma1.2p1_0592F.1_g185500' => 'hma', 'Hma1.2p1_0592F.1_g185510' => 'hma', 'Hma1.2p1_0592F.1_g185520' => 'hma', 'Hma1.2p1_0592F.1_g185530' => 'hma', 'Hma1.2p1_0818F.1_g223450' => 'hma', 'HPP92_009708' => 'vpl', 'HPP92_009793' => 'vpl', 'HPP92_009796' => 'vpl', 'HPP92_009797' => 'vpl', 'HPP92_014940' => 'vpl', 'HPP92_014988' => 'vpl', 'Hund02463' => 'sun', 'Hund02760' => 'sun', 'Hund05071' => 'sun', 'Hund10108' => 'sun', 'Hund11204' => 'sun', 'Hund14016' => 'sun', 'Hund16464' => 'sun', 'Lalb_Chr09g0333391' => 'lal', 'Lalb_Chr11g0070461' => 'lal', 'Lalb_Chr12g0201671' => 'lal', 'Lalb_Chr13g0297161' => 'lal', 'Lj1g0002823' => 'lja', 'Lj3C1074T6' => 'lonja', 'Lj4A212T28' => 'lonja', 'Lj4g0005516' => 'lja', 'Lj4g0013705' => 'lja', 'Lj4g0027865' => 'lja', 'Lj5C92G16' => 'lonja', 'Lj5C92T12' => 'lonja', 'Lj7C596T3' => 'lonja', 'Lj9A446G59' => 'lonja', 'Lj9A482G21' => 'lonja', 'Lsat_1_v5_gn_1_28261' => 'lsa', 'Lsat_1_v5_gn_1_28281' => 'lsa', 'Lsat_1_v5_gn_1_32721' => 'lsa', 'Lsat_1_v5_gn_4_151760' => 'lsa', 'Lsat_1_v5_gn_4_2120' => 'lsa', 'Lsat_1_v5_gn_4_75761' => 'lsa', 'Lsat_1_v5_gn_5_10920' => 'lsa', 'Manes.02G099900' => 'mes', 'Manes.11G096200' => 'mes', 'Manes.12G007200' => 'mes', 'Manes.14G048300' => 'mes', 'Manes.17G114700' => 'mes', 'Mapoly0002s0070' => 'mpo', 'Mapoly0029s0099' => 'mpo', 'MBI07_g24742_MAGBIO' => 'mbi', 'MBI10_g27988_MAGBIO' => 'mbi', 'MBI11_g13057_MAGBIO' => 'mbi', 'MD02G1137200' => 'mdo', 'MD06G1137200' => 'mdo', 'MD07G1122300' => 'mdo', 'MD09G1078200' => 'mdo', 'MD13G1123700' => 'mdo', 'MD14G1151900' => 'mdo', 'MD17G1030900' => 'mdo', 'MD17G1068200' => 'mdo', 'MD17G1068600' => 'mdo', 'Medtr3g077540' => 'mtr', 'Medtr4g105530' => 'mtr', 'Medtr8g076580' => 'mtr', 'Medtr8g076590' => 'mtr', 'Medtr8g096410' => 'mtr', 'MELO3C016411.2' => 'cme', 'MELO3C017780.2' => 'cme', 'MELO3C022560.2' => 'cme', 'MELO3C026187.2' => 'cme', 'MELO3C026286.2' => 'cme', 'MELO3C032854.2' => 'cme', 'Migut.H02495' => 'egut', 'Migut.I00561' => 'egut', 'Migut.K01015' => 'egut', 'Migut.K01016' => 'egut', 'Migut.L00743' => 'egut', 'Migut.L00744' => 'egut', 'Migut.L00746' => 'egut', 'Migut.L00798' => 'egut', 'Migut.L00799' => 'egut', 'Migut.N02096' => 'egut', 'MSTRG.11259' => 'ama', 'MSTRG.23142' => 'ama', 'MSTRG.2499' => 'ama', 'Nitab4.5_0000003g0730' => 'nta', 'Nitab4.5_0000137g0020' => 'nta', 'Nitab4.5_0000721g0210' => 'nta', 'Nitab4.5_0000723g0050' => 'nta', 'Nitab4.5_0000913g0070' => 'nta', 'Nitab4.5_0001332g0040' => 'nta', 'Nitab4.5_0001771g0050' => 'nta', 'Nitab4.5_0001918g0050' => 'nta', 'Nitab4.5_0002686g0030' => 'nta', 'Nitab4.5_0003156g0020' => 'nta', 'Nitab4.5_0003383g0040' => 'nta', 'Nitab4.5_0003918g0010' => 'nta', 'Nitab4.5_0006760g0010' => 'nta', 'Nn1g05981' => 'nnu', 'Nn1g06288' => 'nnu', 'Nn3g16371' => 'nnu', 'Nn3g16786' => 'nnu', 'Nn4g22232' => 'nnu', 'Oeu005144.1' => 'oeu', 'Oeu005145.1' => 'oeu', 'Oeu011348.1' => 'oeu', 'Oeu016415.1' => 'oeu', 'Oeu023501.1' => 'oeu', 'Oeu044473.1' => 'oeu', 'Oeu048892.2' => 'oeu', 'Os01g0549200' => 'osa', 'Os02g0469300' => 'osa', 'Os04g0311100' => 'osa', 'Os06g0474900' => 'osa', 'Os10g0181700' => 'osa', 'Os11g0454800' => 'osa', 'Peaxi162Scf00037g00714' => 'pax', 'Peaxi162Scf00084g01217' => 'pax', 'Peaxi162Scf00257g00217' => 'pax', 'Peaxi162Scf00516g00215' => 'pax', 'Peaxi162Scf00689g00123' => 'pax', 'PGR044G2719' => 'pgr', 'PGR083G1360' => 'pgr', 'PGR102G2849' => 'pgr', 'PGR119G2534' => 'pgr', 'PGSC0003DMG400003538' => 'stu', 'PGSC0003DMG400028138' => 'stu', 'PGSC0003DMG400031732' => 'stu', 'PGSC0003DMG400038165' => 'stu', 'Phvul.002G284600' => 'pvu', 'Phvul.003G258200' => 'pvu', 'Phvul.009G176500' => 'pvu', 'Potri.003G167201' => 'ptr', 'Potri.005G118400' => 'ptr', 'Potri.012G089000' => 'ptr', 'Potri.012G102800' => 'ptr', 'Potri.015G079400' => 'ptr', 'Potri.015G100900' => 'ptr', 'Pp3c14_9810' => 'ppa', 'Pp3c15_10450' => 'ppa', 'Pp3c20_19150' => 'ppa', 'Pp3c23_12740' => 'ppa', 'Pp3c23_6310' => 'ppa', 'Pp3c24_3720' => 'ppa', 'Pp3c27_2580' => 'ppa', 'Pp3c9_8990' => 'ppa', 'PRCOL_00002854' => 'pco', 'Prupe.1G221200' => 'ppe', 'Prupe.3G289000' => 'ppe', 'Prupe.5G147000' => 'ppe', 'Prupe.6G157300' => 'ppe', 'Prupe.7G163400' => 'ppe', 'Psat0s2177g0040' => 'psa', 'Psat3g174760' => 'psa', 'Psat3g192160' => 'psa', 'Psat4g058520' => 'psa', 'Psat4g096840' => 'psa', 'Psat7g037320' => 'psa', 'PSO017G1274' => 'pso', 'PSO017G5166' => 'pso', 'PSO063G4558' => 'pso', 'PSO170G4458' => 'pso', 'PSO170G5005' => 'pso', 'PSO210G6156' => 'pso', 'PSO210G6635' => 'pso', 'PSO210G7397' => 'pso', 'PSO210G7700' => 'pso', 'PSO455G0035' => 'pso', 'PSO455G0180' => 'pso', 'PSO478G4515' => 'pso', 'PSO832G1305' => 'pso', 'PSO832G3489' => 'pso', 'QL02p075247' => 'qlo', 'QL03p051148' => 'qlo', 'QL05p010313' => 'qlo', 'QL06p034627' => 'qlo', 'QL10p001889' => 'qlo', 'QL10p010846' => 'qlo', 'RcHm_v2.0_Chr1g0350621' => 'rch', 'RcHm_v2.0_Chr1g0350641' => 'rch', 'RcHm_v2.0_Chr2g0092891' => 'rch', 'RcHm_v2.0_Chr2g0100251' => 'rch', 'RcHm_v2.0_Chr2g0158661' => 'rch', 'RcHm_v2.0_Chr2g0172741' => 'rch', 'RcHm_v2.0_Chr4g0429571' => 'rch', 'RcHm_v2.0_Chr5g0042471' => 'rch', 'RcHm_v2.0_Chr7g0189451' => 'rch', 'Rhsim08G0052000' => 'rsi', 'Rhsim08G0174400' => 'rsi', 'Rhsim08G0193200' => 'rsi', 'Rhsim10G0214800' => 'rsi', 'Rhsim10G0214900' => 'rsi', 'Rhsim10G0215000' => 'rsi', 'Rhsim12G0022900' => 'rsi', 'Rhsim12G0177500' => 'rsi', 'Rhsim12G0177700' => 'rsi', 'Sabra03G0122600' => 'sbr', 'Sabra05G0097400' => 'sbr', 'Sabra12G0064100' => 'sbr', 'Sabra15G0121300' => 'sbr', 'SalBow2G0642' => 'sbo', 'SalBow5G2667' => 'sbo', 'SalBow5G4873' => 'sbo', 'SalBow8G2395' => 'sbo', 'Sc03g0003290' => 'sci', 'Sc10g0010130' => 'sci', 'Sc22g0003650' => 'sci', 'Sed0001603' => 'sed', 'Sed0004259' => 'sed', 'Sed0006789' => 'sed', 'Sed0011838' => 'sed', 'Sed0012964' => 'sed', 'Sed0016383' => 'sed', 'Sed0019010' => 'sed', 'Sed0020188' => 'sed', 'SEGI_04702' => 'sgi', 'SEGI_17231' => 'sgi', 'SEGI_18877' => 'sgi', 'SEGI_25196' => 'sgi', 'SEGI_25515' => 'sgi', 'SEGI_28445' => 'sgi', 'SEGI_37452' => 'sgi', 'SGA_v2.0_scaffold188G40336' => 'sas', 'SGA_v2.0_scaffold228G43247' => 'sas', 'SGA_v2.0_scaffold280G46853' => 'sas', 'SGA_v2.0_scaffold34G13808' => 'sas', 'SGA_v2.0_scaffold40G15576' => 'sas', 'SGA_v2.0_scaffold611G53188' => 'sas', 'SGA_v2.0_scaffold78G25461' => 'sas', 'SGA_v2.0_scaffold90G27888' => 'sas', 'SHI08601' => 'shi', 'SHI08606' => 'shi', 'SHI17117' => 'shi', 'SHI17119' => 'shi', 'SMO118G0201' => 'smo', 'SMO169G0247' => 'smo', 'SMO176G0006' => 'smo', 'SMO176G0015' => 'smo', 'SMO202G0006' => 'smo', 'SMO240G0050' => 'smo', 'SMO286G0009' => 'smo', 'SMO338G0033' => 'smo', 'SMO356G0533' => 'smo', 'SMO364G0382' => 'smo', 'SMO367G0166' => 'smo', 'SMO367G1098' => 'smo', 'Solyc01g009920.3' => 'sly', 'Solyc01g099300.3' => 'sly', 'Solyc02g084700.3' => 'sly', 'Solyc03g097520.3' => 'sly', 'Solyc06g071580.3' => 'sly', 'Solyc10g081760.3' => 'sly', 'Sopen01g005480' => 'spe', 'Sopen01g042850' => 'spe', 'Sopen02g029370' => 'spe', 'Sopen03g028280' => 'spe', 'Sopen06g027870' => 'spe', 'Sopen10g032270' => 'spe', 'Sp5g18180' => 'spa', 'Sp6g12880' => 'spa', 'Sp6g30850' => 'spa', 'Sp7g22960' => 'spa', 'Sp7g34010' => 'spa', 'SpUn1326_0010' => 'spa', 'TAR371G0242' => 'tar', 'TAR622G0638' => 'tar', 'TAR628G1548' => 'tar', 'TAR629G1079' => 'tar', 'TAR629G3413' => 'tar', 'THA.LOC104804249' => 'tha', 'THA.LOC104808315' => 'tha', 'THA.LOC104809238' => 'tha', 'THA.LOC104825484' => 'tha', 'Thecc.01G025500' => 'tca', 'Thecc.03G015800' => 'tca', 'Thecc.03G018000' => 'tca', 'Thecc.03G134800' => 'tca', 'Thecc.04G014700' => 'tca', 'Thhalv10006991m.g' => 'esa', 'Thhalv10012707m.g' => 'esa', 'Thhalv10015739m.g' => 'esa', 'Thhalv10024553m.g' => 'esa', 'Thhalv10024673m.g' => 'esa', 'Thhalv10029187m.g' => 'esa', 'TPR.G12971' => 'tpr', 'TPR.G29396' => 'tpr', 'TPR.G33376' => 'tpr', 'TPR.G35508' => 'tpr', 'TPR.G35516' => 'tpr', 'TPR.G37317' => 'tpr', 'TPR.G37389' => 'tpr', 'TPR.G37523' => 'tpr', 'TPR.G559' => 'tpr', 'TWI14G0070' => 'twi', 'TWI14G0729' => 'twi', 'TWI18G0596' => 'twi', 'TWI39G0780' => 'twi', 'TWI39G0850' => 'twi', 'TWI73G1052' => 'twi', 'unitig_52.g17485' => 'ugi', 'unitig_61.g26355' => 'ugi', 'vmacro01040' => 'vma', 'vmacro16731' => 'vma', 'vmacro18270' => 'vma', 'vmacro19142' => 'vma', 'vmacro19407' => 'vma', 'vmacro19408' => 'vma', 'vmacro21899' => 'vma', 'vmacro21900' => 'vma', 'vmacro21901' => 'vma', 'VMungo0251G0490' => 'vmu', 'VMungo0251G1748' => 'vmu', 'VMungo1309G0421' => 'vmu', 'Zm00001eb086500' => 'zma', 'Zm00001eb150680' => 'zma', 'Zm00001eb162330' => 'zma', 'Zm00001eb203130' => 'zma', 'Zm00001eb369480' => 'zma', 'Zm00001eb382340' => 'zma', 'Zm00001eb416360' => 'zma' ) $gf_id = 'HOM05D000902' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000902' ) $data_identifier = 'HOM05D000902' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 13, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 10, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 6, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 9, 'hma' => (int) 12, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 4, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 6, 'ppa' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 6, 'rch' => (int) 9, 'rsi' => (int) 9, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 12, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 3, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416360' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000902', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '663', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02470' => 'bna', 'A01p16260' => 'bna', 'A02p01680' => 'bna', 'A03p16600' => 'bna', 'A03p55660' => 'bna', 'A03p64160' => 'bna', 'A03p64170' => 'bna', 'A08p31900' => 'bna', 'A09p59530' => 'bna', 'A10p08230' => 'bna', 'A10p25090' => 'bna', 'Aa31LG3G7100' => 'aar', 'Aa31LG3G7110' => 'aar', 'Aa31LG6G13160' => 'aar', 'Aa31LG7G10770' => 'aar', 'Aa31LG7G3830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2723' => 'aag', 'Actinidia08045' => 'ach', 'Actinidia08888' => 'ach', 'Actinidia18333' => 'ach', 'Actinidia19334' => 'ach', 'Actinidia25552' => 'ach', 'Actinidia26089' => 'ach', 'Actinidia30615' => 'ach', 'Actinidia30616' => 'ach', 'Actinidia33083' => 'ach', 'Actinidia35762' => 'ach', 'Ah.02g110620' => 'amhyb', 'Ah.11g046390' => 'amhyb', 'AL1G31670' => 'aly', 'AL6G23730' => 'aly', 'AL7G14740' => 'aly', 'AL7G14750' => 'aly', 'AL7G14760' => 'aly', 'AL7G28220' => 'aly', 'AL8G24940' => 'aly', 'Aqoxy3G01665' => 'aox', 'Aqoxy3G02853' => 'aox', 'Aqoxy5G01513' => 'aox', 'Aqoxy5G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8SKA4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ75LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKDA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0LJZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7REX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZP4YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWX7I5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2QKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS0L9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPCD8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q161UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC7XCF' => 'arhy', 'AT1G19100' => 'ath', 'AT4G24970' => 'ath', 'AT4G36270' => 'ath', 'AT4G36280' => 'ath', 'AT4G36290' => 'ath', 'AT5G13130' => 'ath', 'AT5G50780' => 'ath', 'ATR0582G266' => 'atr', 'ATR0661G195' => 'atr', 'ATR1152G031' => 'atr', 'Atru.chr11.2382' => 'acertr', 'Atru.chr12.2337' => 'acertr', 'Atru.chr3.744' => 'acertr', 'Atru.chr6.1870' => 'acertr', 'Atru.chr9.2515' => 'acertr', 'AUR62004120' => 'cqu', 'AUR62005667' => 'cqu', 'AUR62007634' => 'cqu', 'AUR62008186' => 'cqu', 'AUR62008187' => 'cqu', 'AUR62008188' => 'cqu', 'AUR62027954' => 'cqu', 'AUR62028766' => 'cqu', 'AUR62028767' => 'cqu', 'AUR62028768' => 'cqu', 'AUR62028886' => 'cqu', 'AUR62029563' => 'cqu', 'AUR62038832' => 'cqu', 'BcaB01g04149' => 'bca', 'BcaB03g12940' => 'bca', 'BcaB03g13090' => 'bca', 'BcaB03g14466' => 'bca', 'BcaB05g24035' => 'bca', 'BcaC01g06050' => 'bca', 'BcaC04g19148' => 'bca', 'BcaC04g20761' => 'bca', 'BcaC06g32845' => 'bca', 'BcaC07g41274' => 'bca', 'BcaC09g50827' => 'bca', 'BcaNung00741' => 'bca', 'BcaNung00742' => 'bca', 'BcaNung01859' => 'bca', 'BcaNung03985' => 'bca', 'BcaNung03989' => 'bca', 'BcaNung05661' => 'bca', 'BolC1t00257H' => 'bol', 'BolC1t01956H' => 'bol', 'BolC2t06534H' => 'bol', 'BolC3t14334H' => 'bol', 'BolC5t30451H' => 'bol', 'BolC7t45880H' => 'bol', 'BolC7t46586H' => 'bol', 'BolC8t49301H' => 'bol', 'BolC8t51837H' => 'bol', 'BolC9t56822H' => 'bol', 'BolC9t59235H' => 'bol', 'BraA01t00234Z' => 'bra', 'BraA01t01563Z' => 'bra', 'BraA02t05147Z' => 'bra', 'BraA03t10947Z' => 'bra', 'BraA03t14633Z' => 'bra', 'BraA08t35112Z' => 'bra', 'BraA09t41330Z' => 'bra', 'BraA10t44570Z' => 'bra', 'C01p02670' => 'bna', 'C01p20260' => 'bna', 'C02p05890' => 'bna', 'C03p19530' => 'bna', 'C05p17470' => 'bna', 'C07p53900' => 'bna', 'C07p61630' => 'bna', 'C08p16800' => 'bna', 'C08p42810' => 'bna', 'C09p39480' => 'bna', 'C09p63980' => 'bna', 'CAN.G1001.7' => 'can', 'CAN.G1034.55' => 'can', 'CAN.G143.7' => 'can', 'CAN.G3340.1' => 'can', 'CAN.G358.19' => 'can', 'CAN.G373.2' => 'can', 'CAN.G674.16' => 'can', 'CAN.G674.17' => 'can', 'CAN.G674.18' => 'can', 'CAN.G732.2' => 'can', 'CAN.G732.3' => 'can', 'CAN.G993.39' => 'can', 'CANSAT01G2052' => 'cansat', 'CANSAT80G0070' => 'cansat', 'CANSAT80G0483' => 'cansat', 'CANSAT80G0625' => 'cansat', 'CARHR019690' => 'chi', 'CARHR080280' => 'chi', 'CARHR152750' => 'chi', 'CARHR152760' => 'chi', 'CARHR152770' => 'chi', 'CARHR200340' => 'chi', 'CARHR232370' => 'chi', 'CARHR244670' => 'chi', 'CARHR244680' => 'chi', 'CARHR257520' => 'chi', 'Carub.0001s1872' => 'cru', 'Carub.0006s1130' => 'cru', 'Carub.0007s0396' => 'cru', 'Carub.0007s0397' => 'cru', 'Carub.0007s1608' => 'cru', 'Carub.0008s1068' => 'cru', 'Carub.0008s1077' => 'cru', 'Ca_16158_v3' => 'car', 'Ca_17571_v3' => 'car', 'Ca_21936_v3' => 'car', 'Ca_22350_v3' => 'car', 'CBR_g22445' => 'cbr', 'CBR_g26290' => 'cbr', 'Cc04_g09610' => 'ccan', 'Cc04_g12280' => 'ccan', 'Cc07_g10230' => 'ccan', 'CDE02G0093' => 'cde', 'CDE02G0701' => 'cde', 'CDE04G1050' => 'cde', 'CDE05G1833' => 'cde', 'CDE05G3058' => 'cde', 'CDE05G3380' => 'cde', 'CDE06G0536' => 'cde', 'Cfa006923' => 'cfa', 'Cfa009402' => 'cfa', 'Cfa018751' => 'cfa', 'Cfa019164' => 'cfa', 'Cfa022935' => 'cfa', 'Ciclev10019081m.g' => 'ccl', 'Ciclev10025076m.g' => 'ccl', 'Ciclev10030712m.g' => 'ccl', 'Ciclev10033760m.g' => 'ccl', 'CiPaw.05G105600' => 'cil', 'CiPaw.08G136700' => 'cil', 'CiPaw.11G003900' => 'cil', 'CiPaw.11G023700' => 'cil', 'CiPaw.12G003700' => 'cil', 'ClCG06G017100' => 'cla', 'ClCG06G018110' => 'cla', 'ClCG07G008800' => 'cla', 'ClCG07G015330' => 'cla', 'COL.COLO4_13698' => 'col', 'COL.COLO4_16659' => 'col', 'COL.COLO4_21986' => 'col', 'COL.COLO4_24049' => 'col', 'COL.COLO4_29061' => 'col', 'COL.COLO4_29075' => 'col', 'COL.COLO4_30094' => 'col', 'Cpa.g.c33689' => 'cpa', 'Cpa.g.sc108.39' => 'cpa', 'Cpa.g.sc108.41' => 'cpa', 'Cpa.g.sc1163.1' => 'cpa', 'Cpa.g.sc4.155' => 'cpa', 'Cpa.g.sc6.194' => 'cpa', 'CsaV3_1G000340' => 'csa', 'CsaV3_1G001400' => 'csa', 'CsaV3_4G002220' => 'csa', 'CsaV3_4G005370' => 'csa', 'CSS0007487' => 'camsi', 'CSS0008066' => 'camsi', 'CSS0009120' => 'camsi', 'CSS0015512' => 'camsi', 'CSS0022409' => 'camsi', 'CSS0025358' => 'camsi', 'CSS0044547' => 'camsi', 'DCAR_013057' => 'dca', 'DCAR_015058' => 'dca', 'DCAR_016027' => 'dca', 'DCAR_017327' => 'dca', 'DCAR_020743' => 'dca', 'DCAR_026157' => 'dca', 'DCAR_032339' => 'dca', 'DCAR_032340' => 'dca', 'Dinv11200' => 'din', 'Dinv11201' => 'din', 'Dinv20631' => 'din', 'Dinv23182' => 'din', 'Dinv33466' => 'din', 'Dinv33583' => 'din', 'Dinv38565' => 'din', 'Duzib068G0200' => 'dzi', 'Duzib147G0132' => 'dzi', 'Duzib147G0635' => 'dzi', 'Duzib205G1670' => 'dzi', 'Duzib251G0606' => 'dzi', 'ECA232G3336' => 'eca', 'ECA232G3763' => 'eca', 'ECA232G4845' => 'eca', 'ECA234G1607' => 'eca', 'ECA246G0932' => 'eca', 'ECA247G0781' => 'eca', 'ECA247G1932' => 'eca', 'ECA247G2079' => 'eca', 'ECA247G3338' => 'eca', 'ECA247G4115' => 'eca', 'EL10Ac3g06552' => 'bvu', 'EL10Ac5g10721' => 'bvu', 'EL10Ac5g10722' => 'bvu', 'EL10Ac5g10723' => 'bvu', 'EL10Ac5g11361' => 'bvu', 'EL10Ac6g13553' => 'bvu', 'EL10As8g23872' => 'bvu', 'Eucgr.B00250' => 'egr', 'Eucgr.B00251' => 'egr', 'Eucgr.B03533' => 'egr', 'Eucgr.I02381' => 'egr', 'Eucgr.K02700' => 'egr', 'FAN02G0174' => 'fan', 'FAN02G3146' => 'fan', 'FAN04G1672' => 'fan', 'FAN04G2273' => 'fan', 'FAN05G2791' => 'fan', 'FAN05G4035' => 'fan', 'FAN07G0834' => 'fan', 'FAN08G1198' => 'fan', 'FAN09G4182' => 'fan', 'FAN12G0496' => 'fan', 'FAN13G1027' => 'fan', 'FAN13G2951' => 'fan', 'FAN14G0705' => 'fan', 'FAN14G0720' => 'fan', 'FAN17G0201' => 'fan', 'FAN17G2665' => 'fan', 'FAN18G1456' => 'fan', 'FAN18G1525' => 'fan', 'FAN18G3500' => 'fan', 'FAN28G2670' => 'fan', 'FvH4_1g12391' => 'fve', 'FvH4_4g23220' => 'fve', 'FvH4_5g08810' => 'fve', 'FvH4_5g28960' => 'fve', 'FvH4_6g42820' => 'fve', 'FvH4_6g51110' => 'fve', 'Glyma.02G051802' => 'gma', 'Glyma.04G185300' => 'gma', 'Glyma.05G202900' => 'gma', 'Glyma.08G010300' => 'gma', 'Glyma.16G131900' => 'gma', 'Glyma.17G087900' => 'gma', 'Gohir.A07G048600' => 'ghi', 'Gohir.A11G179000' => 'ghi', 'Gohir.A12G140900' => 'ghi', 'Gohir.A12G140950' => 'ghi', 'Gohir.A12G191700' => 'ghi', 'Gohir.A13G086300' => 'ghi', 'Gohir.D07G052900' => 'ghi', 'Gohir.D11G186600' => 'ghi', 'Gohir.D12G145575' => 'ghi', 'Gohir.D12G145650' => 'ghi', 'Gohir.D12G145725' => 'ghi', 'Gohir.D12G194050' => 'ghi', 'Gohir.D13G091800' => 'ghi', 'Gorai.001G055900' => 'gra', 'Gorai.007G198400' => 'gra', 'Gorai.008G157000' => 'gra', 'Gorai.008G157100' => 'gra', 'Gorai.008G208700' => 'gra', 'Gorai.010G138700' => 'gra', 'GSVIVG01000977001' => 'vvi', 'GSVIVG01007708001' => 'vvi', 'GSVIVG01008587001' => 'vvi', 'GSVIVG01018849001' => 'vvi', 'GSVIVG01032432001' => 'vvi', 'HanXRQChr02g0034131' => 'han', 'HanXRQChr02g0035981' => 'han', 'HanXRQChr02g0035991' => 'han', 'HanXRQChr05g0155611' => 'han', 'HanXRQChr05g0155621' => 'han', 'HanXRQChr08g0236501' => 'han', 'HanXRQChr09g0261321' => 'han', 'HanXRQChr09g0272081' => 'han', 'HanXRQChr10g0310741' => 'han', 'HanXRQChr11g0325591' => 'han', 'HanXRQChr12g0385691' => 'han', 'HanXRQChr13g0387801' => 'han', 'HanXRQChr15g0463011' => 'han', 'Haze_03826' => 'cav', 'Haze_03827' => 'cav', 'Haze_07183' => 'cav', 'Haze_07537' => 'cav', 'Haze_07539' => 'cav', 'Haze_12461' => 'cav', 'Haze_16115' => 'cav', 'Haze_16808' => 'cav', 'Haze_18531' => 'cav', 'Hma1.2p1_0046F.1_g026700' => 'hma', 'Hma1.2p1_0046F.1_g026710' => 'hma', 'Hma1.2p1_0168F.1_g074340' => 'hma', 'Hma1.2p1_0266F.1_g107030' => 'hma', 'Hma1.2p1_0266F.1_g107060' => 'hma', 'Hma1.2p1_0275F.1_g110510' => 'hma', 'Hma1.2p1_0592F.1_g185490' => 'hma', 'Hma1.2p1_0592F.1_g185500' => 'hma', 'Hma1.2p1_0592F.1_g185510' => 'hma', 'Hma1.2p1_0592F.1_g185520' => 'hma', 'Hma1.2p1_0592F.1_g185530' => 'hma', 'Hma1.2p1_0818F.1_g223450' => 'hma', 'HPP92_009708' => 'vpl', 'HPP92_009793' => 'vpl', 'HPP92_009796' => 'vpl', 'HPP92_009797' => 'vpl', 'HPP92_014940' => 'vpl', 'HPP92_014988' => 'vpl', 'Hund02463' => 'sun', 'Hund02760' => 'sun', 'Hund05071' => 'sun', 'Hund10108' => 'sun', 'Hund11204' => 'sun', 'Hund14016' => 'sun', 'Hund16464' => 'sun', 'Lalb_Chr09g0333391' => 'lal', 'Lalb_Chr11g0070461' => 'lal', 'Lalb_Chr12g0201671' => 'lal', 'Lalb_Chr13g0297161' => 'lal', 'Lj1g0002823' => 'lja', 'Lj3C1074T6' => 'lonja', 'Lj4A212T28' => 'lonja', 'Lj4g0005516' => 'lja', 'Lj4g0013705' => 'lja', 'Lj4g0027865' => 'lja', 'Lj5C92G16' => 'lonja', 'Lj5C92T12' => 'lonja', 'Lj7C596T3' => 'lonja', 'Lj9A446G59' => 'lonja', 'Lj9A482G21' => 'lonja', 'Lsat_1_v5_gn_1_28261' => 'lsa', 'Lsat_1_v5_gn_1_28281' => 'lsa', 'Lsat_1_v5_gn_1_32721' => 'lsa', 'Lsat_1_v5_gn_4_151760' => 'lsa', 'Lsat_1_v5_gn_4_2120' => 'lsa', 'Lsat_1_v5_gn_4_75761' => 'lsa', 'Lsat_1_v5_gn_5_10920' => 'lsa', 'Manes.02G099900' => 'mes', 'Manes.11G096200' => 'mes', 'Manes.12G007200' => 'mes', 'Manes.14G048300' => 'mes', 'Manes.17G114700' => 'mes', 'Mapoly0002s0070' => 'mpo', 'Mapoly0029s0099' => 'mpo', 'MBI07_g24742_MAGBIO' => 'mbi', 'MBI10_g27988_MAGBIO' => 'mbi', 'MBI11_g13057_MAGBIO' => 'mbi', 'MD02G1137200' => 'mdo', 'MD06G1137200' => 'mdo', 'MD07G1122300' => 'mdo', 'MD09G1078200' => 'mdo', 'MD13G1123700' => 'mdo', 'MD14G1151900' => 'mdo', 'MD17G1030900' => 'mdo', 'MD17G1068200' => 'mdo', 'MD17G1068600' => 'mdo', 'Medtr3g077540' => 'mtr', 'Medtr4g105530' => 'mtr', 'Medtr8g076580' => 'mtr', 'Medtr8g076590' => 'mtr', 'Medtr8g096410' => 'mtr', 'MELO3C016411.2' => 'cme', 'MELO3C017780.2' => 'cme', 'MELO3C022560.2' => 'cme', 'MELO3C026187.2' => 'cme', 'MELO3C026286.2' => 'cme', 'MELO3C032854.2' => 'cme', 'Migut.H02495' => 'egut', 'Migut.I00561' => 'egut', 'Migut.K01015' => 'egut', 'Migut.K01016' => 'egut', 'Migut.L00743' => 'egut', 'Migut.L00744' => 'egut', 'Migut.L00746' => 'egut', 'Migut.L00798' => 'egut', 'Migut.L00799' => 'egut', 'Migut.N02096' => 'egut', 'MSTRG.11259' => 'ama', 'MSTRG.23142' => 'ama', 'MSTRG.2499' => 'ama', 'Nitab4.5_0000003g0730' => 'nta', 'Nitab4.5_0000137g0020' => 'nta', 'Nitab4.5_0000721g0210' => 'nta', 'Nitab4.5_0000723g0050' => 'nta', 'Nitab4.5_0000913g0070' => 'nta', 'Nitab4.5_0001332g0040' => 'nta', 'Nitab4.5_0001771g0050' => 'nta', 'Nitab4.5_0001918g0050' => 'nta', 'Nitab4.5_0002686g0030' => 'nta', 'Nitab4.5_0003156g0020' => 'nta', 'Nitab4.5_0003383g0040' => 'nta', 'Nitab4.5_0003918g0010' => 'nta', 'Nitab4.5_0006760g0010' => 'nta', 'Nn1g05981' => 'nnu', 'Nn1g06288' => 'nnu', 'Nn3g16371' => 'nnu', 'Nn3g16786' => 'nnu', 'Nn4g22232' => 'nnu', 'Oeu005144.1' => 'oeu', 'Oeu005145.1' => 'oeu', 'Oeu011348.1' => 'oeu', 'Oeu016415.1' => 'oeu', 'Oeu023501.1' => 'oeu', 'Oeu044473.1' => 'oeu', 'Oeu048892.2' => 'oeu', 'Os01g0549200' => 'osa', 'Os02g0469300' => 'osa', 'Os04g0311100' => 'osa', 'Os06g0474900' => 'osa', 'Os10g0181700' => 'osa', 'Os11g0454800' => 'osa', 'Peaxi162Scf00037g00714' => 'pax', 'Peaxi162Scf00084g01217' => 'pax', 'Peaxi162Scf00257g00217' => 'pax', 'Peaxi162Scf00516g00215' => 'pax', 'Peaxi162Scf00689g00123' => 'pax', 'PGR044G2719' => 'pgr', 'PGR083G1360' => 'pgr', 'PGR102G2849' => 'pgr', 'PGR119G2534' => 'pgr', 'PGSC0003DMG400003538' => 'stu', 'PGSC0003DMG400028138' => 'stu', 'PGSC0003DMG400031732' => 'stu', 'PGSC0003DMG400038165' => 'stu', 'Phvul.002G284600' => 'pvu', 'Phvul.003G258200' => 'pvu', 'Phvul.009G176500' => 'pvu', 'Potri.003G167201' => 'ptr', 'Potri.005G118400' => 'ptr', 'Potri.012G089000' => 'ptr', 'Potri.012G102800' => 'ptr', 'Potri.015G079400' => 'ptr', 'Potri.015G100900' => 'ptr', 'Pp3c14_9810' => 'ppa', 'Pp3c15_10450' => 'ppa', 'Pp3c20_19150' => 'ppa', 'Pp3c23_12740' => 'ppa', 'Pp3c23_6310' => 'ppa', 'Pp3c24_3720' => 'ppa', 'Pp3c27_2580' => 'ppa', 'Pp3c9_8990' => 'ppa', 'PRCOL_00002854' => 'pco', 'Prupe.1G221200' => 'ppe', 'Prupe.3G289000' => 'ppe', 'Prupe.5G147000' => 'ppe', 'Prupe.6G157300' => 'ppe', 'Prupe.7G163400' => 'ppe', 'Psat0s2177g0040' => 'psa', 'Psat3g174760' => 'psa', 'Psat3g192160' => 'psa', 'Psat4g058520' => 'psa', 'Psat4g096840' => 'psa', 'Psat7g037320' => 'psa', 'PSO017G1274' => 'pso', 'PSO017G5166' => 'pso', 'PSO063G4558' => 'pso', 'PSO170G4458' => 'pso', 'PSO170G5005' => 'pso', 'PSO210G6156' => 'pso', 'PSO210G6635' => 'pso', 'PSO210G7397' => 'pso', 'PSO210G7700' => 'pso', 'PSO455G0035' => 'pso', 'PSO455G0180' => 'pso', 'PSO478G4515' => 'pso', 'PSO832G1305' => 'pso', 'PSO832G3489' => 'pso', 'QL02p075247' => 'qlo', 'QL03p051148' => 'qlo', 'QL05p010313' => 'qlo', 'QL06p034627' => 'qlo', 'QL10p001889' => 'qlo', 'QL10p010846' => 'qlo', 'RcHm_v2.0_Chr1g0350621' => 'rch', 'RcHm_v2.0_Chr1g0350641' => 'rch', 'RcHm_v2.0_Chr2g0092891' => 'rch', 'RcHm_v2.0_Chr2g0100251' => 'rch', 'RcHm_v2.0_Chr2g0158661' => 'rch', 'RcHm_v2.0_Chr2g0172741' => 'rch', 'RcHm_v2.0_Chr4g0429571' => 'rch', 'RcHm_v2.0_Chr5g0042471' => 'rch', 'RcHm_v2.0_Chr7g0189451' => 'rch', 'Rhsim08G0052000' => 'rsi', 'Rhsim08G0174400' => 'rsi', 'Rhsim08G0193200' => 'rsi', 'Rhsim10G0214800' => 'rsi', 'Rhsim10G0214900' => 'rsi', 'Rhsim10G0215000' => 'rsi', 'Rhsim12G0022900' => 'rsi', 'Rhsim12G0177500' => 'rsi', 'Rhsim12G0177700' => 'rsi', 'Sabra03G0122600' => 'sbr', 'Sabra05G0097400' => 'sbr', 'Sabra12G0064100' => 'sbr', 'Sabra15G0121300' => 'sbr', 'SalBow2G0642' => 'sbo', 'SalBow5G2667' => 'sbo', 'SalBow5G4873' => 'sbo', 'SalBow8G2395' => 'sbo', 'Sc03g0003290' => 'sci', 'Sc10g0010130' => 'sci', 'Sc22g0003650' => 'sci', 'Sed0001603' => 'sed', 'Sed0004259' => 'sed', 'Sed0006789' => 'sed', 'Sed0011838' => 'sed', 'Sed0012964' => 'sed', 'Sed0016383' => 'sed', 'Sed0019010' => 'sed', 'Sed0020188' => 'sed', 'SEGI_04702' => 'sgi', 'SEGI_17231' => 'sgi', 'SEGI_18877' => 'sgi', 'SEGI_25196' => 'sgi', 'SEGI_25515' => 'sgi', 'SEGI_28445' => 'sgi', 'SEGI_37452' => 'sgi', 'SGA_v2.0_scaffold188G40336' => 'sas', 'SGA_v2.0_scaffold228G43247' => 'sas', 'SGA_v2.0_scaffold280G46853' => 'sas', 'SGA_v2.0_scaffold34G13808' => 'sas', 'SGA_v2.0_scaffold40G15576' => 'sas', 'SGA_v2.0_scaffold611G53188' => 'sas', 'SGA_v2.0_scaffold78G25461' => 'sas', 'SGA_v2.0_scaffold90G27888' => 'sas', 'SHI08601' => 'shi', 'SHI08606' => 'shi', 'SHI17117' => 'shi', 'SHI17119' => 'shi', 'SMO118G0201' => 'smo', 'SMO169G0247' => 'smo', 'SMO176G0006' => 'smo', 'SMO176G0015' => 'smo', 'SMO202G0006' => 'smo', 'SMO240G0050' => 'smo', 'SMO286G0009' => 'smo', 'SMO338G0033' => 'smo', 'SMO356G0533' => 'smo', 'SMO364G0382' => 'smo', 'SMO367G0166' => 'smo', 'SMO367G1098' => 'smo', 'Solyc01g009920.3' => 'sly', 'Solyc01g099300.3' => 'sly', 'Solyc02g084700.3' => 'sly', 'Solyc03g097520.3' => 'sly', 'Solyc06g071580.3' => 'sly', 'Solyc10g081760.3' => 'sly', 'Sopen01g005480' => 'spe', 'Sopen01g042850' => 'spe', 'Sopen02g029370' => 'spe', 'Sopen03g028280' => 'spe', 'Sopen06g027870' => 'spe', 'Sopen10g032270' => 'spe', 'Sp5g18180' => 'spa', 'Sp6g12880' => 'spa', 'Sp6g30850' => 'spa', 'Sp7g22960' => 'spa', 'Sp7g34010' => 'spa', 'SpUn1326_0010' => 'spa', 'TAR371G0242' => 'tar', 'TAR622G0638' => 'tar', 'TAR628G1548' => 'tar', 'TAR629G1079' => 'tar', 'TAR629G3413' => 'tar', 'THA.LOC104804249' => 'tha', 'THA.LOC104808315' => 'tha', 'THA.LOC104809238' => 'tha', 'THA.LOC104825484' => 'tha', 'Thecc.01G025500' => 'tca', 'Thecc.03G015800' => 'tca', 'Thecc.03G018000' => 'tca', 'Thecc.03G134800' => 'tca', 'Thecc.04G014700' => 'tca', 'Thhalv10006991m.g' => 'esa', 'Thhalv10012707m.g' => 'esa', 'Thhalv10015739m.g' => 'esa', 'Thhalv10024553m.g' => 'esa', 'Thhalv10024673m.g' => 'esa', 'Thhalv10029187m.g' => 'esa', 'TPR.G12971' => 'tpr', 'TPR.G29396' => 'tpr', 'TPR.G33376' => 'tpr', 'TPR.G35508' => 'tpr', 'TPR.G35516' => 'tpr', 'TPR.G37317' => 'tpr', 'TPR.G37389' => 'tpr', 'TPR.G37523' => 'tpr', 'TPR.G559' => 'tpr', 'TWI14G0070' => 'twi', 'TWI14G0729' => 'twi', 'TWI18G0596' => 'twi', 'TWI39G0780' => 'twi', 'TWI39G0850' => 'twi', 'TWI73G1052' => 'twi', 'unitig_52.g17485' => 'ugi', 'unitig_61.g26355' => 'ugi', 'vmacro01040' => 'vma', 'vmacro16731' => 'vma', 'vmacro18270' => 'vma', 'vmacro19142' => 'vma', 'vmacro19407' => 'vma', 'vmacro19408' => 'vma', 'vmacro21899' => 'vma', 'vmacro21900' => 'vma', 'vmacro21901' => 'vma', 'VMungo0251G0490' => 'vmu', 'VMungo0251G1748' => 'vmu', 'VMungo1309G0421' => 'vmu', 'Zm00001eb086500' => 'zma', 'Zm00001eb150680' => 'zma', 'Zm00001eb162330' => 'zma', 'Zm00001eb203130' => 'zma', 'Zm00001eb369480' => 'zma', 'Zm00001eb382340' => 'zma', 'Zm00001eb416360' => 'zma' ), 'gf_id' => 'HOM05D000902', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000902' ), 'data_identifier' => 'HOM05D000902', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000902', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '663', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02470' => 'bna', 'A01p16260' => 'bna', 'A02p01680' => 'bna', 'A03p16600' => 'bna', 'A03p55660' => 'bna', 'A03p64160' => 'bna', 'A03p64170' => 'bna', 'A08p31900' => 'bna', 'A09p59530' => 'bna', 'A10p08230' => 'bna', 'A10p25090' => 'bna', 'Aa31LG3G7100' => 'aar', 'Aa31LG3G7110' => 'aar', 'Aa31LG6G13160' => 'aar', 'Aa31LG7G10770' => 'aar', 'Aa31LG7G3830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2723' => 'aag', 'Actinidia08045' => 'ach', 'Actinidia08888' => 'ach', 'Actinidia18333' => 'ach', 'Actinidia19334' => 'ach', 'Actinidia25552' => 'ach', 'Actinidia26089' => 'ach', 'Actinidia30615' => 'ach', 'Actinidia30616' => 'ach', 'Actinidia33083' => 'ach', 'Actinidia35762' => 'ach', 'Ah.02g110620' => 'amhyb', 'Ah.11g046390' => 'amhyb', 'AL1G31670' => 'aly', 'AL6G23730' => 'aly', 'AL7G14740' => 'aly', 'AL7G14750' => 'aly', 'AL7G14760' => 'aly', 'AL7G28220' => 'aly', 'AL8G24940' => 'aly', 'Aqoxy3G01665' => 'aox', 'Aqoxy3G02853' => 'aox', 'Aqoxy5G01513' => 'aox', 'Aqoxy5G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8SKA4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ75LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKDA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0LJZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7REX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZP4YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWX7I5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2QKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS0L9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPCD8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q161UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC7XCF' => 'arhy', 'AT1G19100' => 'ath', 'AT4G24970' => 'ath', 'AT4G36270' => 'ath', 'AT4G36280' => 'ath', 'AT4G36290' => 'ath', 'AT5G13130' => 'ath', 'AT5G50780' => 'ath', 'ATR0582G266' => 'atr', 'ATR0661G195' => 'atr', 'ATR1152G031' => 'atr', 'Atru.chr11.2382' => 'acertr', 'Atru.chr12.2337' => 'acertr', 'Atru.chr3.744' => 'acertr', 'Atru.chr6.1870' => 'acertr', 'Atru.chr9.2515' => 'acertr', 'AUR62004120' => 'cqu', 'AUR62005667' => 'cqu', 'AUR62007634' => 'cqu', 'AUR62008186' => 'cqu', 'AUR62008187' => 'cqu', 'AUR62008188' => 'cqu', 'AUR62027954' => 'cqu', 'AUR62028766' => 'cqu', 'AUR62028767' => 'cqu', 'AUR62028768' => 'cqu', 'AUR62028886' => 'cqu', 'AUR62029563' => 'cqu', 'AUR62038832' => 'cqu', 'BcaB01g04149' => 'bca', 'BcaB03g12940' => 'bca', 'BcaB03g13090' => 'bca', 'BcaB03g14466' => 'bca', 'BcaB05g24035' => 'bca', 'BcaC01g06050' => 'bca', 'BcaC04g19148' => 'bca', 'BcaC04g20761' => 'bca', 'BcaC06g32845' => 'bca', 'BcaC07g41274' => 'bca', 'BcaC09g50827' => 'bca', 'BcaNung00741' => 'bca', 'BcaNung00742' => 'bca', 'BcaNung01859' => 'bca', 'BcaNung03985' => 'bca', 'BcaNung03989' => 'bca', 'BcaNung05661' => 'bca', 'BolC1t00257H' => 'bol', 'BolC1t01956H' => 'bol', 'BolC2t06534H' => 'bol', 'BolC3t14334H' => 'bol', 'BolC5t30451H' => 'bol', 'BolC7t45880H' => 'bol', 'BolC7t46586H' => 'bol', 'BolC8t49301H' => 'bol', 'BolC8t51837H' => 'bol', 'BolC9t56822H' => 'bol', 'BolC9t59235H' => 'bol', 'BraA01t00234Z' => 'bra', 'BraA01t01563Z' => 'bra', 'BraA02t05147Z' => 'bra', 'BraA03t10947Z' => 'bra', 'BraA03t14633Z' => 'bra', 'BraA08t35112Z' => 'bra', 'BraA09t41330Z' => 'bra', 'BraA10t44570Z' => 'bra', 'C01p02670' => 'bna', 'C01p20260' => 'bna', 'C02p05890' => 'bna', 'C03p19530' => 'bna', 'C05p17470' => 'bna', 'C07p53900' => 'bna', 'C07p61630' => 'bna', 'C08p16800' => 'bna', 'C08p42810' => 'bna', 'C09p39480' => 'bna', 'C09p63980' => 'bna', 'CAN.G1001.7' => 'can', 'CAN.G1034.55' => 'can', 'CAN.G143.7' => 'can', 'CAN.G3340.1' => 'can', 'CAN.G358.19' => 'can', 'CAN.G373.2' => 'can', 'CAN.G674.16' => 'can', 'CAN.G674.17' => 'can', 'CAN.G674.18' => 'can', 'CAN.G732.2' => 'can', 'CAN.G732.3' => 'can', 'CAN.G993.39' => 'can', 'CANSAT01G2052' => 'cansat', 'CANSAT80G0070' => 'cansat', 'CANSAT80G0483' => 'cansat', 'CANSAT80G0625' => 'cansat', 'CARHR019690' => 'chi', 'CARHR080280' => 'chi', 'CARHR152750' => 'chi', 'CARHR152760' => 'chi', 'CARHR152770' => 'chi', 'CARHR200340' => 'chi', 'CARHR232370' => 'chi', 'CARHR244670' => 'chi', 'CARHR244680' => 'chi', 'CARHR257520' => 'chi', 'Carub.0001s1872' => 'cru', 'Carub.0006s1130' => 'cru', 'Carub.0007s0396' => 'cru', 'Carub.0007s0397' => 'cru', 'Carub.0007s1608' => 'cru', 'Carub.0008s1068' => 'cru', 'Carub.0008s1077' => 'cru', 'Ca_16158_v3' => 'car', 'Ca_17571_v3' => 'car', 'Ca_21936_v3' => 'car', 'Ca_22350_v3' => 'car', 'CBR_g22445' => 'cbr', 'CBR_g26290' => 'cbr', 'Cc04_g09610' => 'ccan', 'Cc04_g12280' => 'ccan', 'Cc07_g10230' => 'ccan', 'CDE02G0093' => 'cde', 'CDE02G0701' => 'cde', 'CDE04G1050' => 'cde', 'CDE05G1833' => 'cde', 'CDE05G3058' => 'cde', 'CDE05G3380' => 'cde', 'CDE06G0536' => 'cde', 'Cfa006923' => 'cfa', 'Cfa009402' => 'cfa', 'Cfa018751' => 'cfa', 'Cfa019164' => 'cfa', 'Cfa022935' => 'cfa', 'Ciclev10019081m.g' => 'ccl', 'Ciclev10025076m.g' => 'ccl', 'Ciclev10030712m.g' => 'ccl', 'Ciclev10033760m.g' => 'ccl', 'CiPaw.05G105600' => 'cil', 'CiPaw.08G136700' => 'cil', 'CiPaw.11G003900' => 'cil', 'CiPaw.11G023700' => 'cil', 'CiPaw.12G003700' => 'cil', 'ClCG06G017100' => 'cla', 'ClCG06G018110' => 'cla', 'ClCG07G008800' => 'cla', 'ClCG07G015330' => 'cla', 'COL.COLO4_13698' => 'col', 'COL.COLO4_16659' => 'col', 'COL.COLO4_21986' => 'col', 'COL.COLO4_24049' => 'col', 'COL.COLO4_29061' => 'col', 'COL.COLO4_29075' => 'col', 'COL.COLO4_30094' => 'col', 'Cpa.g.c33689' => 'cpa', 'Cpa.g.sc108.39' => 'cpa', 'Cpa.g.sc108.41' => 'cpa', 'Cpa.g.sc1163.1' => 'cpa', 'Cpa.g.sc4.155' => 'cpa', 'Cpa.g.sc6.194' => 'cpa', 'CsaV3_1G000340' => 'csa', 'CsaV3_1G001400' => 'csa', 'CsaV3_4G002220' => 'csa', 'CsaV3_4G005370' => 'csa', 'CSS0007487' => 'camsi', 'CSS0008066' => 'camsi', 'CSS0009120' => 'camsi', 'CSS0015512' => 'camsi', 'CSS0022409' => 'camsi', 'CSS0025358' => 'camsi', 'CSS0044547' => 'camsi', 'DCAR_013057' => 'dca', 'DCAR_015058' => 'dca', 'DCAR_016027' => 'dca', 'DCAR_017327' => 'dca', 'DCAR_020743' => 'dca', 'DCAR_026157' => 'dca', 'DCAR_032339' => 'dca', 'DCAR_032340' => 'dca', 'Dinv11200' => 'din', 'Dinv11201' => 'din', 'Dinv20631' => 'din', 'Dinv23182' => 'din', 'Dinv33466' => 'din', 'Dinv33583' => 'din', 'Dinv38565' => 'din', 'Duzib068G0200' => 'dzi', 'Duzib147G0132' => 'dzi', 'Duzib147G0635' => 'dzi', 'Duzib205G1670' => 'dzi', 'Duzib251G0606' => 'dzi', 'ECA232G3336' => 'eca', 'ECA232G3763' => 'eca', 'ECA232G4845' => 'eca', 'ECA234G1607' => 'eca', 'ECA246G0932' => 'eca', 'ECA247G0781' => 'eca', 'ECA247G1932' => 'eca', 'ECA247G2079' => 'eca', 'ECA247G3338' => 'eca', 'ECA247G4115' => 'eca', 'EL10Ac3g06552' => 'bvu', 'EL10Ac5g10721' => 'bvu', 'EL10Ac5g10722' => 'bvu', 'EL10Ac5g10723' => 'bvu', 'EL10Ac5g11361' => 'bvu', 'EL10Ac6g13553' => 'bvu', 'EL10As8g23872' => 'bvu', 'Eucgr.B00250' => 'egr', 'Eucgr.B00251' => 'egr', 'Eucgr.B03533' => 'egr', 'Eucgr.I02381' => 'egr', 'Eucgr.K02700' => 'egr', 'FAN02G0174' => 'fan', 'FAN02G3146' => 'fan', 'FAN04G1672' => 'fan', 'FAN04G2273' => 'fan', 'FAN05G2791' => 'fan', 'FAN05G4035' => 'fan', 'FAN07G0834' => 'fan', 'FAN08G1198' => 'fan', 'FAN09G4182' => 'fan', 'FAN12G0496' => 'fan', 'FAN13G1027' => 'fan', 'FAN13G2951' => 'fan', 'FAN14G0705' => 'fan', 'FAN14G0720' => 'fan', 'FAN17G0201' => 'fan', 'FAN17G2665' => 'fan', 'FAN18G1456' => 'fan', 'FAN18G1525' => 'fan', 'FAN18G3500' => 'fan', 'FAN28G2670' => 'fan', 'FvH4_1g12391' => 'fve', 'FvH4_4g23220' => 'fve', 'FvH4_5g08810' => 'fve', 'FvH4_5g28960' => 'fve', 'FvH4_6g42820' => 'fve', 'FvH4_6g51110' => 'fve', 'Glyma.02G051802' => 'gma', 'Glyma.04G185300' => 'gma', 'Glyma.05G202900' => 'gma', 'Glyma.08G010300' => 'gma', 'Glyma.16G131900' => 'gma', 'Glyma.17G087900' => 'gma', 'Gohir.A07G048600' => 'ghi', 'Gohir.A11G179000' => 'ghi', 'Gohir.A12G140900' => 'ghi', 'Gohir.A12G140950' => 'ghi', 'Gohir.A12G191700' => 'ghi', 'Gohir.A13G086300' => 'ghi', 'Gohir.D07G052900' => 'ghi', 'Gohir.D11G186600' => 'ghi', 'Gohir.D12G145575' => 'ghi', 'Gohir.D12G145650' => 'ghi', 'Gohir.D12G145725' => 'ghi', 'Gohir.D12G194050' => 'ghi', 'Gohir.D13G091800' => 'ghi', 'Gorai.001G055900' => 'gra', 'Gorai.007G198400' => 'gra', 'Gorai.008G157000' => 'gra', 'Gorai.008G157100' => 'gra', 'Gorai.008G208700' => 'gra', 'Gorai.010G138700' => 'gra', 'GSVIVG01000977001' => 'vvi', 'GSVIVG01007708001' => 'vvi', 'GSVIVG01008587001' => 'vvi', 'GSVIVG01018849001' => 'vvi', 'GSVIVG01032432001' => 'vvi', 'HanXRQChr02g0034131' => 'han', 'HanXRQChr02g0035981' => 'han', 'HanXRQChr02g0035991' => 'han', 'HanXRQChr05g0155611' => 'han', 'HanXRQChr05g0155621' => 'han', 'HanXRQChr08g0236501' => 'han', 'HanXRQChr09g0261321' => 'han', 'HanXRQChr09g0272081' => 'han', 'HanXRQChr10g0310741' => 'han', 'HanXRQChr11g0325591' => 'han', 'HanXRQChr12g0385691' => 'han', 'HanXRQChr13g0387801' => 'han', 'HanXRQChr15g0463011' => 'han', 'Haze_03826' => 'cav', 'Haze_03827' => 'cav', 'Haze_07183' => 'cav', 'Haze_07537' => 'cav', 'Haze_07539' => 'cav', 'Haze_12461' => 'cav', 'Haze_16115' => 'cav', 'Haze_16808' => 'cav', 'Haze_18531' => 'cav', 'Hma1.2p1_0046F.1_g026700' => 'hma', 'Hma1.2p1_0046F.1_g026710' => 'hma', 'Hma1.2p1_0168F.1_g074340' => 'hma', 'Hma1.2p1_0266F.1_g107030' => 'hma', 'Hma1.2p1_0266F.1_g107060' => 'hma', 'Hma1.2p1_0275F.1_g110510' => 'hma', 'Hma1.2p1_0592F.1_g185490' => 'hma', 'Hma1.2p1_0592F.1_g185500' => 'hma', 'Hma1.2p1_0592F.1_g185510' => 'hma', 'Hma1.2p1_0592F.1_g185520' => 'hma', 'Hma1.2p1_0592F.1_g185530' => 'hma', 'Hma1.2p1_0818F.1_g223450' => 'hma', 'HPP92_009708' => 'vpl', 'HPP92_009793' => 'vpl', 'HPP92_009796' => 'vpl', 'HPP92_009797' => 'vpl', 'HPP92_014940' => 'vpl', 'HPP92_014988' => 'vpl', 'Hund02463' => 'sun', 'Hund02760' => 'sun', 'Hund05071' => 'sun', 'Hund10108' => 'sun', 'Hund11204' => 'sun', 'Hund14016' => 'sun', 'Hund16464' => 'sun', 'Lalb_Chr09g0333391' => 'lal', 'Lalb_Chr11g0070461' => 'lal', 'Lalb_Chr12g0201671' => 'lal', 'Lalb_Chr13g0297161' => 'lal', 'Lj1g0002823' => 'lja', 'Lj3C1074T6' => 'lonja', 'Lj4A212T28' => 'lonja', 'Lj4g0005516' => 'lja', 'Lj4g0013705' => 'lja', 'Lj4g0027865' => 'lja', 'Lj5C92G16' => 'lonja', 'Lj5C92T12' => 'lonja', 'Lj7C596T3' => 'lonja', 'Lj9A446G59' => 'lonja', 'Lj9A482G21' => 'lonja', 'Lsat_1_v5_gn_1_28261' => 'lsa', 'Lsat_1_v5_gn_1_28281' => 'lsa', 'Lsat_1_v5_gn_1_32721' => 'lsa', 'Lsat_1_v5_gn_4_151760' => 'lsa', 'Lsat_1_v5_gn_4_2120' => 'lsa', 'Lsat_1_v5_gn_4_75761' => 'lsa', 'Lsat_1_v5_gn_5_10920' => 'lsa', 'Manes.02G099900' => 'mes', 'Manes.11G096200' => 'mes', 'Manes.12G007200' => 'mes', 'Manes.14G048300' => 'mes', 'Manes.17G114700' => 'mes', 'Mapoly0002s0070' => 'mpo', 'Mapoly0029s0099' => 'mpo', 'MBI07_g24742_MAGBIO' => 'mbi', 'MBI10_g27988_MAGBIO' => 'mbi', 'MBI11_g13057_MAGBIO' => 'mbi', 'MD02G1137200' => 'mdo', 'MD06G1137200' => 'mdo', 'MD07G1122300' => 'mdo', 'MD09G1078200' => 'mdo', 'MD13G1123700' => 'mdo', 'MD14G1151900' => 'mdo', 'MD17G1030900' => 'mdo', 'MD17G1068200' => 'mdo', 'MD17G1068600' => 'mdo', 'Medtr3g077540' => 'mtr', 'Medtr4g105530' => 'mtr', 'Medtr8g076580' => 'mtr', 'Medtr8g076590' => 'mtr', 'Medtr8g096410' => 'mtr', 'MELO3C016411.2' => 'cme', 'MELO3C017780.2' => 'cme', 'MELO3C022560.2' => 'cme', 'MELO3C026187.2' => 'cme', 'MELO3C026286.2' => 'cme', 'MELO3C032854.2' => 'cme', 'Migut.H02495' => 'egut', 'Migut.I00561' => 'egut', 'Migut.K01015' => 'egut', 'Migut.K01016' => 'egut', 'Migut.L00743' => 'egut', 'Migut.L00744' => 'egut', 'Migut.L00746' => 'egut', 'Migut.L00798' => 'egut', 'Migut.L00799' => 'egut', 'Migut.N02096' => 'egut', 'MSTRG.11259' => 'ama', 'MSTRG.23142' => 'ama', 'MSTRG.2499' => 'ama', 'Nitab4.5_0000003g0730' => 'nta', 'Nitab4.5_0000137g0020' => 'nta', 'Nitab4.5_0000721g0210' => 'nta', 'Nitab4.5_0000723g0050' => 'nta', 'Nitab4.5_0000913g0070' => 'nta', 'Nitab4.5_0001332g0040' => 'nta', 'Nitab4.5_0001771g0050' => 'nta', 'Nitab4.5_0001918g0050' => 'nta', 'Nitab4.5_0002686g0030' => 'nta', 'Nitab4.5_0003156g0020' => 'nta', 'Nitab4.5_0003383g0040' => 'nta', 'Nitab4.5_0003918g0010' => 'nta', 'Nitab4.5_0006760g0010' => 'nta', 'Nn1g05981' => 'nnu', 'Nn1g06288' => 'nnu', 'Nn3g16371' => 'nnu', 'Nn3g16786' => 'nnu', 'Nn4g22232' => 'nnu', 'Oeu005144.1' => 'oeu', 'Oeu005145.1' => 'oeu', 'Oeu011348.1' => 'oeu', 'Oeu016415.1' => 'oeu', 'Oeu023501.1' => 'oeu', 'Oeu044473.1' => 'oeu', 'Oeu048892.2' => 'oeu', 'Os01g0549200' => 'osa', 'Os02g0469300' => 'osa', 'Os04g0311100' => 'osa', 'Os06g0474900' => 'osa', 'Os10g0181700' => 'osa', 'Os11g0454800' => 'osa', 'Peaxi162Scf00037g00714' => 'pax', 'Peaxi162Scf00084g01217' => 'pax', 'Peaxi162Scf00257g00217' => 'pax', 'Peaxi162Scf00516g00215' => 'pax', 'Peaxi162Scf00689g00123' => 'pax', 'PGR044G2719' => 'pgr', 'PGR083G1360' => 'pgr', 'PGR102G2849' => 'pgr', 'PGR119G2534' => 'pgr', 'PGSC0003DMG400003538' => 'stu', 'PGSC0003DMG400028138' => 'stu', 'PGSC0003DMG400031732' => 'stu', 'PGSC0003DMG400038165' => 'stu', 'Phvul.002G284600' => 'pvu', 'Phvul.003G258200' => 'pvu', 'Phvul.009G176500' => 'pvu', 'Potri.003G167201' => 'ptr', 'Potri.005G118400' => 'ptr', 'Potri.012G089000' => 'ptr', 'Potri.012G102800' => 'ptr', 'Potri.015G079400' => 'ptr', 'Potri.015G100900' => 'ptr', 'Pp3c14_9810' => 'ppa', 'Pp3c15_10450' => 'ppa', 'Pp3c20_19150' => 'ppa', 'Pp3c23_12740' => 'ppa', 'Pp3c23_6310' => 'ppa', 'Pp3c24_3720' => 'ppa', 'Pp3c27_2580' => 'ppa', 'Pp3c9_8990' => 'ppa', 'PRCOL_00002854' => 'pco', 'Prupe.1G221200' => 'ppe', 'Prupe.3G289000' => 'ppe', 'Prupe.5G147000' => 'ppe', 'Prupe.6G157300' => 'ppe', 'Prupe.7G163400' => 'ppe', 'Psat0s2177g0040' => 'psa', 'Psat3g174760' => 'psa', 'Psat3g192160' => 'psa', 'Psat4g058520' => 'psa', 'Psat4g096840' => 'psa', 'Psat7g037320' => 'psa', 'PSO017G1274' => 'pso', 'PSO017G5166' => 'pso', 'PSO063G4558' => 'pso', 'PSO170G4458' => 'pso', 'PSO170G5005' => 'pso', 'PSO210G6156' => 'pso', 'PSO210G6635' => 'pso', 'PSO210G7397' => 'pso', 'PSO210G7700' => 'pso', 'PSO455G0035' => 'pso', 'PSO455G0180' => 'pso', 'PSO478G4515' => 'pso', 'PSO832G1305' => 'pso', 'PSO832G3489' => 'pso', 'QL02p075247' => 'qlo', 'QL03p051148' => 'qlo', 'QL05p010313' => 'qlo', 'QL06p034627' => 'qlo', 'QL10p001889' => 'qlo', 'QL10p010846' => 'qlo', 'RcHm_v2.0_Chr1g0350621' => 'rch', 'RcHm_v2.0_Chr1g0350641' => 'rch', 'RcHm_v2.0_Chr2g0092891' => 'rch', 'RcHm_v2.0_Chr2g0100251' => 'rch', 'RcHm_v2.0_Chr2g0158661' => 'rch', 'RcHm_v2.0_Chr2g0172741' => 'rch', 'RcHm_v2.0_Chr4g0429571' => 'rch', 'RcHm_v2.0_Chr5g0042471' => 'rch', 'RcHm_v2.0_Chr7g0189451' => 'rch', 'Rhsim08G0052000' => 'rsi', 'Rhsim08G0174400' => 'rsi', 'Rhsim08G0193200' => 'rsi', 'Rhsim10G0214800' => 'rsi', 'Rhsim10G0214900' => 'rsi', 'Rhsim10G0215000' => 'rsi', 'Rhsim12G0022900' => 'rsi', 'Rhsim12G0177500' => 'rsi', 'Rhsim12G0177700' => 'rsi', 'Sabra03G0122600' => 'sbr', 'Sabra05G0097400' => 'sbr', 'Sabra12G0064100' => 'sbr', 'Sabra15G0121300' => 'sbr', 'SalBow2G0642' => 'sbo', 'SalBow5G2667' => 'sbo', 'SalBow5G4873' => 'sbo', 'SalBow8G2395' => 'sbo', 'Sc03g0003290' => 'sci', 'Sc10g0010130' => 'sci', 'Sc22g0003650' => 'sci', 'Sed0001603' => 'sed', 'Sed0004259' => 'sed', 'Sed0006789' => 'sed', 'Sed0011838' => 'sed', 'Sed0012964' => 'sed', 'Sed0016383' => 'sed', 'Sed0019010' => 'sed', 'Sed0020188' => 'sed', 'SEGI_04702' => 'sgi', 'SEGI_17231' => 'sgi', 'SEGI_18877' => 'sgi', 'SEGI_25196' => 'sgi', 'SEGI_25515' => 'sgi', 'SEGI_28445' => 'sgi', 'SEGI_37452' => 'sgi', 'SGA_v2.0_scaffold188G40336' => 'sas', 'SGA_v2.0_scaffold228G43247' => 'sas', 'SGA_v2.0_scaffold280G46853' => 'sas', 'SGA_v2.0_scaffold34G13808' => 'sas', 'SGA_v2.0_scaffold40G15576' => 'sas', 'SGA_v2.0_scaffold611G53188' => 'sas', 'SGA_v2.0_scaffold78G25461' => 'sas', 'SGA_v2.0_scaffold90G27888' => 'sas', 'SHI08601' => 'shi', 'SHI08606' => 'shi', 'SHI17117' => 'shi', 'SHI17119' => 'shi', 'SMO118G0201' => 'smo', 'SMO169G0247' => 'smo', 'SMO176G0006' => 'smo', 'SMO176G0015' => 'smo', 'SMO202G0006' => 'smo', 'SMO240G0050' => 'smo', 'SMO286G0009' => 'smo', 'SMO338G0033' => 'smo', 'SMO356G0533' => 'smo', 'SMO364G0382' => 'smo', 'SMO367G0166' => 'smo', 'SMO367G1098' => 'smo', 'Solyc01g009920.3' => 'sly', 'Solyc01g099300.3' => 'sly', 'Solyc02g084700.3' => 'sly', 'Solyc03g097520.3' => 'sly', 'Solyc06g071580.3' => 'sly', 'Solyc10g081760.3' => 'sly', 'Sopen01g005480' => 'spe', 'Sopen01g042850' => 'spe', 'Sopen02g029370' => 'spe', 'Sopen03g028280' => 'spe', 'Sopen06g027870' => 'spe', 'Sopen10g032270' => 'spe', 'Sp5g18180' => 'spa', 'Sp6g12880' => 'spa', 'Sp6g30850' => 'spa', 'Sp7g22960' => 'spa', 'Sp7g34010' => 'spa', 'SpUn1326_0010' => 'spa', 'TAR371G0242' => 'tar', 'TAR622G0638' => 'tar', 'TAR628G1548' => 'tar', 'TAR629G1079' => 'tar', 'TAR629G3413' => 'tar', 'THA.LOC104804249' => 'tha', 'THA.LOC104808315' => 'tha', 'THA.LOC104809238' => 'tha', 'THA.LOC104825484' => 'tha', 'Thecc.01G025500' => 'tca', 'Thecc.03G015800' => 'tca', 'Thecc.03G018000' => 'tca', 'Thecc.03G134800' => 'tca', 'Thecc.04G014700' => 'tca', 'Thhalv10006991m.g' => 'esa', 'Thhalv10012707m.g' => 'esa', 'Thhalv10015739m.g' => 'esa', 'Thhalv10024553m.g' => 'esa', 'Thhalv10024673m.g' => 'esa', 'Thhalv10029187m.g' => 'esa', 'TPR.G12971' => 'tpr', 'TPR.G29396' => 'tpr', 'TPR.G33376' => 'tpr', 'TPR.G35508' => 'tpr', 'TPR.G35516' => 'tpr', 'TPR.G37317' => 'tpr', 'TPR.G37389' => 'tpr', 'TPR.G37523' => 'tpr', 'TPR.G559' => 'tpr', 'TWI14G0070' => 'twi', 'TWI14G0729' => 'twi', 'TWI18G0596' => 'twi', 'TWI39G0780' => 'twi', 'TWI39G0850' => 'twi', 'TWI73G1052' => 'twi', 'unitig_52.g17485' => 'ugi', 'unitig_61.g26355' => 'ugi', 'vmacro01040' => 'vma', 'vmacro16731' => 'vma', 'vmacro18270' => 'vma', 'vmacro19142' => 'vma', 'vmacro19407' => 'vma', 'vmacro19408' => 'vma', 'vmacro21899' => 'vma', 'vmacro21900' => 'vma', 'vmacro21901' => 'vma', 'VMungo0251G0490' => 'vmu', 'VMungo0251G1748' => 'vmu', 'VMungo1309G0421' => 'vmu', 'Zm00001eb086500' => 'zma', 'Zm00001eb150680' => 'zma', 'Zm00001eb162330' => 'zma', 'Zm00001eb203130' => 'zma', 'Zm00001eb369480' => 'zma', 'Zm00001eb382340' => 'zma', 'Zm00001eb416360' => 'zma' ) $gf_id = 'HOM05D000902' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000902' ) $data_identifier = 'HOM05D000902' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 13, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 10, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 6, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 9, 'hma' => (int) 12, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 4, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 6, 'ppa' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 6, 'rch' => (int) 9, 'rsi' => (int) 9, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 12, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 3, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416360' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000902', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '663', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02470' => 'bna', 'A01p16260' => 'bna', 'A02p01680' => 'bna', 'A03p16600' => 'bna', 'A03p55660' => 'bna', 'A03p64160' => 'bna', 'A03p64170' => 'bna', 'A08p31900' => 'bna', 'A09p59530' => 'bna', 'A10p08230' => 'bna', 'A10p25090' => 'bna', 'Aa31LG3G7100' => 'aar', 'Aa31LG3G7110' => 'aar', 'Aa31LG6G13160' => 'aar', 'Aa31LG7G10770' => 'aar', 'Aa31LG7G3830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2723' => 'aag', 'Actinidia08045' => 'ach', 'Actinidia08888' => 'ach', 'Actinidia18333' => 'ach', 'Actinidia19334' => 'ach', 'Actinidia25552' => 'ach', 'Actinidia26089' => 'ach', 'Actinidia30615' => 'ach', 'Actinidia30616' => 'ach', 'Actinidia33083' => 'ach', 'Actinidia35762' => 'ach', 'Ah.02g110620' => 'amhyb', 'Ah.11g046390' => 'amhyb', 'AL1G31670' => 'aly', 'AL6G23730' => 'aly', 'AL7G14740' => 'aly', 'AL7G14750' => 'aly', 'AL7G14760' => 'aly', 'AL7G28220' => 'aly', 'AL8G24940' => 'aly', 'Aqoxy3G01665' => 'aox', 'Aqoxy3G02853' => 'aox', 'Aqoxy5G01513' => 'aox', 'Aqoxy5G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8SKA4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ75LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKDA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0LJZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7REX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZP4YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWX7I5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2QKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS0L9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPCD8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q161UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC7XCF' => 'arhy', 'AT1G19100' => 'ath', 'AT4G24970' => 'ath', 'AT4G36270' => 'ath', 'AT4G36280' => 'ath', 'AT4G36290' => 'ath', 'AT5G13130' => 'ath', 'AT5G50780' => 'ath', 'ATR0582G266' => 'atr', 'ATR0661G195' => 'atr', 'ATR1152G031' => 'atr', 'Atru.chr11.2382' => 'acertr', 'Atru.chr12.2337' => 'acertr', 'Atru.chr3.744' => 'acertr', 'Atru.chr6.1870' => 'acertr', 'Atru.chr9.2515' => 'acertr', 'AUR62004120' => 'cqu', 'AUR62005667' => 'cqu', 'AUR62007634' => 'cqu', 'AUR62008186' => 'cqu', 'AUR62008187' => 'cqu', 'AUR62008188' => 'cqu', 'AUR62027954' => 'cqu', 'AUR62028766' => 'cqu', 'AUR62028767' => 'cqu', 'AUR62028768' => 'cqu', 'AUR62028886' => 'cqu', 'AUR62029563' => 'cqu', 'AUR62038832' => 'cqu', 'BcaB01g04149' => 'bca', 'BcaB03g12940' => 'bca', 'BcaB03g13090' => 'bca', 'BcaB03g14466' => 'bca', 'BcaB05g24035' => 'bca', 'BcaC01g06050' => 'bca', 'BcaC04g19148' => 'bca', 'BcaC04g20761' => 'bca', 'BcaC06g32845' => 'bca', 'BcaC07g41274' => 'bca', 'BcaC09g50827' => 'bca', 'BcaNung00741' => 'bca', 'BcaNung00742' => 'bca', 'BcaNung01859' => 'bca', 'BcaNung03985' => 'bca', 'BcaNung03989' => 'bca', 'BcaNung05661' => 'bca', 'BolC1t00257H' => 'bol', 'BolC1t01956H' => 'bol', 'BolC2t06534H' => 'bol', 'BolC3t14334H' => 'bol', 'BolC5t30451H' => 'bol', 'BolC7t45880H' => 'bol', 'BolC7t46586H' => 'bol', 'BolC8t49301H' => 'bol', 'BolC8t51837H' => 'bol', 'BolC9t56822H' => 'bol', 'BolC9t59235H' => 'bol', 'BraA01t00234Z' => 'bra', 'BraA01t01563Z' => 'bra', 'BraA02t05147Z' => 'bra', 'BraA03t10947Z' => 'bra', 'BraA03t14633Z' => 'bra', 'BraA08t35112Z' => 'bra', 'BraA09t41330Z' => 'bra', 'BraA10t44570Z' => 'bra', 'C01p02670' => 'bna', 'C01p20260' => 'bna', 'C02p05890' => 'bna', 'C03p19530' => 'bna', 'C05p17470' => 'bna', 'C07p53900' => 'bna', 'C07p61630' => 'bna', 'C08p16800' => 'bna', 'C08p42810' => 'bna', 'C09p39480' => 'bna', 'C09p63980' => 'bna', 'CAN.G1001.7' => 'can', 'CAN.G1034.55' => 'can', 'CAN.G143.7' => 'can', 'CAN.G3340.1' => 'can', 'CAN.G358.19' => 'can', 'CAN.G373.2' => 'can', 'CAN.G674.16' => 'can', 'CAN.G674.17' => 'can', 'CAN.G674.18' => 'can', 'CAN.G732.2' => 'can', 'CAN.G732.3' => 'can', 'CAN.G993.39' => 'can', 'CANSAT01G2052' => 'cansat', 'CANSAT80G0070' => 'cansat', 'CANSAT80G0483' => 'cansat', 'CANSAT80G0625' => 'cansat', 'CARHR019690' => 'chi', 'CARHR080280' => 'chi', 'CARHR152750' => 'chi', 'CARHR152760' => 'chi', 'CARHR152770' => 'chi', 'CARHR200340' => 'chi', 'CARHR232370' => 'chi', 'CARHR244670' => 'chi', 'CARHR244680' => 'chi', 'CARHR257520' => 'chi', 'Carub.0001s1872' => 'cru', 'Carub.0006s1130' => 'cru', 'Carub.0007s0396' => 'cru', 'Carub.0007s0397' => 'cru', 'Carub.0007s1608' => 'cru', 'Carub.0008s1068' => 'cru', 'Carub.0008s1077' => 'cru', 'Ca_16158_v3' => 'car', 'Ca_17571_v3' => 'car', 'Ca_21936_v3' => 'car', 'Ca_22350_v3' => 'car', 'CBR_g22445' => 'cbr', 'CBR_g26290' => 'cbr', 'Cc04_g09610' => 'ccan', 'Cc04_g12280' => 'ccan', 'Cc07_g10230' => 'ccan', 'CDE02G0093' => 'cde', 'CDE02G0701' => 'cde', 'CDE04G1050' => 'cde', 'CDE05G1833' => 'cde', 'CDE05G3058' => 'cde', 'CDE05G3380' => 'cde', 'CDE06G0536' => 'cde', 'Cfa006923' => 'cfa', 'Cfa009402' => 'cfa', 'Cfa018751' => 'cfa', 'Cfa019164' => 'cfa', 'Cfa022935' => 'cfa', 'Ciclev10019081m.g' => 'ccl', 'Ciclev10025076m.g' => 'ccl', 'Ciclev10030712m.g' => 'ccl', 'Ciclev10033760m.g' => 'ccl', 'CiPaw.05G105600' => 'cil', 'CiPaw.08G136700' => 'cil', 'CiPaw.11G003900' => 'cil', 'CiPaw.11G023700' => 'cil', 'CiPaw.12G003700' => 'cil', 'ClCG06G017100' => 'cla', 'ClCG06G018110' => 'cla', 'ClCG07G008800' => 'cla', 'ClCG07G015330' => 'cla', 'COL.COLO4_13698' => 'col', 'COL.COLO4_16659' => 'col', 'COL.COLO4_21986' => 'col', 'COL.COLO4_24049' => 'col', 'COL.COLO4_29061' => 'col', 'COL.COLO4_29075' => 'col', 'COL.COLO4_30094' => 'col', 'Cpa.g.c33689' => 'cpa', 'Cpa.g.sc108.39' => 'cpa', 'Cpa.g.sc108.41' => 'cpa', 'Cpa.g.sc1163.1' => 'cpa', 'Cpa.g.sc4.155' => 'cpa', 'Cpa.g.sc6.194' => 'cpa', 'CsaV3_1G000340' => 'csa', 'CsaV3_1G001400' => 'csa', 'CsaV3_4G002220' => 'csa', 'CsaV3_4G005370' => 'csa', 'CSS0007487' => 'camsi', 'CSS0008066' => 'camsi', 'CSS0009120' => 'camsi', 'CSS0015512' => 'camsi', 'CSS0022409' => 'camsi', 'CSS0025358' => 'camsi', 'CSS0044547' => 'camsi', 'DCAR_013057' => 'dca', 'DCAR_015058' => 'dca', 'DCAR_016027' => 'dca', 'DCAR_017327' => 'dca', 'DCAR_020743' => 'dca', 'DCAR_026157' => 'dca', 'DCAR_032339' => 'dca', 'DCAR_032340' => 'dca', 'Dinv11200' => 'din', 'Dinv11201' => 'din', 'Dinv20631' => 'din', 'Dinv23182' => 'din', 'Dinv33466' => 'din', 'Dinv33583' => 'din', 'Dinv38565' => 'din', 'Duzib068G0200' => 'dzi', 'Duzib147G0132' => 'dzi', 'Duzib147G0635' => 'dzi', 'Duzib205G1670' => 'dzi', 'Duzib251G0606' => 'dzi', 'ECA232G3336' => 'eca', 'ECA232G3763' => 'eca', 'ECA232G4845' => 'eca', 'ECA234G1607' => 'eca', 'ECA246G0932' => 'eca', 'ECA247G0781' => 'eca', 'ECA247G1932' => 'eca', 'ECA247G2079' => 'eca', 'ECA247G3338' => 'eca', 'ECA247G4115' => 'eca', 'EL10Ac3g06552' => 'bvu', 'EL10Ac5g10721' => 'bvu', 'EL10Ac5g10722' => 'bvu', 'EL10Ac5g10723' => 'bvu', 'EL10Ac5g11361' => 'bvu', 'EL10Ac6g13553' => 'bvu', 'EL10As8g23872' => 'bvu', 'Eucgr.B00250' => 'egr', 'Eucgr.B00251' => 'egr', 'Eucgr.B03533' => 'egr', 'Eucgr.I02381' => 'egr', 'Eucgr.K02700' => 'egr', 'FAN02G0174' => 'fan', 'FAN02G3146' => 'fan', 'FAN04G1672' => 'fan', 'FAN04G2273' => 'fan', 'FAN05G2791' => 'fan', 'FAN05G4035' => 'fan', 'FAN07G0834' => 'fan', 'FAN08G1198' => 'fan', 'FAN09G4182' => 'fan', 'FAN12G0496' => 'fan', 'FAN13G1027' => 'fan', 'FAN13G2951' => 'fan', 'FAN14G0705' => 'fan', 'FAN14G0720' => 'fan', 'FAN17G0201' => 'fan', 'FAN17G2665' => 'fan', 'FAN18G1456' => 'fan', 'FAN18G1525' => 'fan', 'FAN18G3500' => 'fan', 'FAN28G2670' => 'fan', 'FvH4_1g12391' => 'fve', 'FvH4_4g23220' => 'fve', 'FvH4_5g08810' => 'fve', 'FvH4_5g28960' => 'fve', 'FvH4_6g42820' => 'fve', 'FvH4_6g51110' => 'fve', 'Glyma.02G051802' => 'gma', 'Glyma.04G185300' => 'gma', 'Glyma.05G202900' => 'gma', 'Glyma.08G010300' => 'gma', 'Glyma.16G131900' => 'gma', 'Glyma.17G087900' => 'gma', 'Gohir.A07G048600' => 'ghi', 'Gohir.A11G179000' => 'ghi', 'Gohir.A12G140900' => 'ghi', 'Gohir.A12G140950' => 'ghi', 'Gohir.A12G191700' => 'ghi', 'Gohir.A13G086300' => 'ghi', 'Gohir.D07G052900' => 'ghi', 'Gohir.D11G186600' => 'ghi', 'Gohir.D12G145575' => 'ghi', 'Gohir.D12G145650' => 'ghi', 'Gohir.D12G145725' => 'ghi', 'Gohir.D12G194050' => 'ghi', 'Gohir.D13G091800' => 'ghi', 'Gorai.001G055900' => 'gra', 'Gorai.007G198400' => 'gra', 'Gorai.008G157000' => 'gra', 'Gorai.008G157100' => 'gra', 'Gorai.008G208700' => 'gra', 'Gorai.010G138700' => 'gra', 'GSVIVG01000977001' => 'vvi', 'GSVIVG01007708001' => 'vvi', 'GSVIVG01008587001' => 'vvi', 'GSVIVG01018849001' => 'vvi', 'GSVIVG01032432001' => 'vvi', 'HanXRQChr02g0034131' => 'han', 'HanXRQChr02g0035981' => 'han', 'HanXRQChr02g0035991' => 'han', 'HanXRQChr05g0155611' => 'han', 'HanXRQChr05g0155621' => 'han', 'HanXRQChr08g0236501' => 'han', 'HanXRQChr09g0261321' => 'han', 'HanXRQChr09g0272081' => 'han', 'HanXRQChr10g0310741' => 'han', 'HanXRQChr11g0325591' => 'han', 'HanXRQChr12g0385691' => 'han', 'HanXRQChr13g0387801' => 'han', 'HanXRQChr15g0463011' => 'han', 'Haze_03826' => 'cav', 'Haze_03827' => 'cav', 'Haze_07183' => 'cav', 'Haze_07537' => 'cav', 'Haze_07539' => 'cav', 'Haze_12461' => 'cav', 'Haze_16115' => 'cav', 'Haze_16808' => 'cav', 'Haze_18531' => 'cav', 'Hma1.2p1_0046F.1_g026700' => 'hma', 'Hma1.2p1_0046F.1_g026710' => 'hma', 'Hma1.2p1_0168F.1_g074340' => 'hma', 'Hma1.2p1_0266F.1_g107030' => 'hma', 'Hma1.2p1_0266F.1_g107060' => 'hma', 'Hma1.2p1_0275F.1_g110510' => 'hma', 'Hma1.2p1_0592F.1_g185490' => 'hma', 'Hma1.2p1_0592F.1_g185500' => 'hma', 'Hma1.2p1_0592F.1_g185510' => 'hma', 'Hma1.2p1_0592F.1_g185520' => 'hma', 'Hma1.2p1_0592F.1_g185530' => 'hma', 'Hma1.2p1_0818F.1_g223450' => 'hma', 'HPP92_009708' => 'vpl', 'HPP92_009793' => 'vpl', 'HPP92_009796' => 'vpl', 'HPP92_009797' => 'vpl', 'HPP92_014940' => 'vpl', 'HPP92_014988' => 'vpl', 'Hund02463' => 'sun', 'Hund02760' => 'sun', 'Hund05071' => 'sun', 'Hund10108' => 'sun', 'Hund11204' => 'sun', 'Hund14016' => 'sun', 'Hund16464' => 'sun', 'Lalb_Chr09g0333391' => 'lal', 'Lalb_Chr11g0070461' => 'lal', 'Lalb_Chr12g0201671' => 'lal', 'Lalb_Chr13g0297161' => 'lal', 'Lj1g0002823' => 'lja', 'Lj3C1074T6' => 'lonja', 'Lj4A212T28' => 'lonja', 'Lj4g0005516' => 'lja', 'Lj4g0013705' => 'lja', 'Lj4g0027865' => 'lja', 'Lj5C92G16' => 'lonja', 'Lj5C92T12' => 'lonja', 'Lj7C596T3' => 'lonja', 'Lj9A446G59' => 'lonja', 'Lj9A482G21' => 'lonja', 'Lsat_1_v5_gn_1_28261' => 'lsa', 'Lsat_1_v5_gn_1_28281' => 'lsa', 'Lsat_1_v5_gn_1_32721' => 'lsa', 'Lsat_1_v5_gn_4_151760' => 'lsa', 'Lsat_1_v5_gn_4_2120' => 'lsa', 'Lsat_1_v5_gn_4_75761' => 'lsa', 'Lsat_1_v5_gn_5_10920' => 'lsa', 'Manes.02G099900' => 'mes', 'Manes.11G096200' => 'mes', 'Manes.12G007200' => 'mes', 'Manes.14G048300' => 'mes', 'Manes.17G114700' => 'mes', 'Mapoly0002s0070' => 'mpo', 'Mapoly0029s0099' => 'mpo', 'MBI07_g24742_MAGBIO' => 'mbi', 'MBI10_g27988_MAGBIO' => 'mbi', 'MBI11_g13057_MAGBIO' => 'mbi', 'MD02G1137200' => 'mdo', 'MD06G1137200' => 'mdo', 'MD07G1122300' => 'mdo', 'MD09G1078200' => 'mdo', 'MD13G1123700' => 'mdo', 'MD14G1151900' => 'mdo', 'MD17G1030900' => 'mdo', 'MD17G1068200' => 'mdo', 'MD17G1068600' => 'mdo', 'Medtr3g077540' => 'mtr', 'Medtr4g105530' => 'mtr', 'Medtr8g076580' => 'mtr', 'Medtr8g076590' => 'mtr', 'Medtr8g096410' => 'mtr', 'MELO3C016411.2' => 'cme', 'MELO3C017780.2' => 'cme', 'MELO3C022560.2' => 'cme', 'MELO3C026187.2' => 'cme', 'MELO3C026286.2' => 'cme', 'MELO3C032854.2' => 'cme', 'Migut.H02495' => 'egut', 'Migut.I00561' => 'egut', 'Migut.K01015' => 'egut', 'Migut.K01016' => 'egut', 'Migut.L00743' => 'egut', 'Migut.L00744' => 'egut', 'Migut.L00746' => 'egut', 'Migut.L00798' => 'egut', 'Migut.L00799' => 'egut', 'Migut.N02096' => 'egut', 'MSTRG.11259' => 'ama', 'MSTRG.23142' => 'ama', 'MSTRG.2499' => 'ama', 'Nitab4.5_0000003g0730' => 'nta', 'Nitab4.5_0000137g0020' => 'nta', 'Nitab4.5_0000721g0210' => 'nta', 'Nitab4.5_0000723g0050' => 'nta', 'Nitab4.5_0000913g0070' => 'nta', 'Nitab4.5_0001332g0040' => 'nta', 'Nitab4.5_0001771g0050' => 'nta', 'Nitab4.5_0001918g0050' => 'nta', 'Nitab4.5_0002686g0030' => 'nta', 'Nitab4.5_0003156g0020' => 'nta', 'Nitab4.5_0003383g0040' => 'nta', 'Nitab4.5_0003918g0010' => 'nta', 'Nitab4.5_0006760g0010' => 'nta', 'Nn1g05981' => 'nnu', 'Nn1g06288' => 'nnu', 'Nn3g16371' => 'nnu', 'Nn3g16786' => 'nnu', 'Nn4g22232' => 'nnu', 'Oeu005144.1' => 'oeu', 'Oeu005145.1' => 'oeu', 'Oeu011348.1' => 'oeu', 'Oeu016415.1' => 'oeu', 'Oeu023501.1' => 'oeu', 'Oeu044473.1' => 'oeu', 'Oeu048892.2' => 'oeu', 'Os01g0549200' => 'osa', 'Os02g0469300' => 'osa', 'Os04g0311100' => 'osa', 'Os06g0474900' => 'osa', 'Os10g0181700' => 'osa', 'Os11g0454800' => 'osa', 'Peaxi162Scf00037g00714' => 'pax', 'Peaxi162Scf00084g01217' => 'pax', 'Peaxi162Scf00257g00217' => 'pax', 'Peaxi162Scf00516g00215' => 'pax', 'Peaxi162Scf00689g00123' => 'pax', 'PGR044G2719' => 'pgr', 'PGR083G1360' => 'pgr', 'PGR102G2849' => 'pgr', 'PGR119G2534' => 'pgr', 'PGSC0003DMG400003538' => 'stu', 'PGSC0003DMG400028138' => 'stu', 'PGSC0003DMG400031732' => 'stu', 'PGSC0003DMG400038165' => 'stu', 'Phvul.002G284600' => 'pvu', 'Phvul.003G258200' => 'pvu', 'Phvul.009G176500' => 'pvu', 'Potri.003G167201' => 'ptr', 'Potri.005G118400' => 'ptr', 'Potri.012G089000' => 'ptr', 'Potri.012G102800' => 'ptr', 'Potri.015G079400' => 'ptr', 'Potri.015G100900' => 'ptr', 'Pp3c14_9810' => 'ppa', 'Pp3c15_10450' => 'ppa', 'Pp3c20_19150' => 'ppa', 'Pp3c23_12740' => 'ppa', 'Pp3c23_6310' => 'ppa', 'Pp3c24_3720' => 'ppa', 'Pp3c27_2580' => 'ppa', 'Pp3c9_8990' => 'ppa', 'PRCOL_00002854' => 'pco', 'Prupe.1G221200' => 'ppe', 'Prupe.3G289000' => 'ppe', 'Prupe.5G147000' => 'ppe', 'Prupe.6G157300' => 'ppe', 'Prupe.7G163400' => 'ppe', 'Psat0s2177g0040' => 'psa', 'Psat3g174760' => 'psa', 'Psat3g192160' => 'psa', 'Psat4g058520' => 'psa', 'Psat4g096840' => 'psa', 'Psat7g037320' => 'psa', 'PSO017G1274' => 'pso', 'PSO017G5166' => 'pso', 'PSO063G4558' => 'pso', 'PSO170G4458' => 'pso', 'PSO170G5005' => 'pso', 'PSO210G6156' => 'pso', 'PSO210G6635' => 'pso', 'PSO210G7397' => 'pso', 'PSO210G7700' => 'pso', 'PSO455G0035' => 'pso', 'PSO455G0180' => 'pso', 'PSO478G4515' => 'pso', 'PSO832G1305' => 'pso', 'PSO832G3489' => 'pso', 'QL02p075247' => 'qlo', 'QL03p051148' => 'qlo', 'QL05p010313' => 'qlo', 'QL06p034627' => 'qlo', 'QL10p001889' => 'qlo', 'QL10p010846' => 'qlo', 'RcHm_v2.0_Chr1g0350621' => 'rch', 'RcHm_v2.0_Chr1g0350641' => 'rch', 'RcHm_v2.0_Chr2g0092891' => 'rch', 'RcHm_v2.0_Chr2g0100251' => 'rch', 'RcHm_v2.0_Chr2g0158661' => 'rch', 'RcHm_v2.0_Chr2g0172741' => 'rch', 'RcHm_v2.0_Chr4g0429571' => 'rch', 'RcHm_v2.0_Chr5g0042471' => 'rch', 'RcHm_v2.0_Chr7g0189451' => 'rch', 'Rhsim08G0052000' => 'rsi', 'Rhsim08G0174400' => 'rsi', 'Rhsim08G0193200' => 'rsi', 'Rhsim10G0214800' => 'rsi', 'Rhsim10G0214900' => 'rsi', 'Rhsim10G0215000' => 'rsi', 'Rhsim12G0022900' => 'rsi', 'Rhsim12G0177500' => 'rsi', 'Rhsim12G0177700' => 'rsi', 'Sabra03G0122600' => 'sbr', 'Sabra05G0097400' => 'sbr', 'Sabra12G0064100' => 'sbr', 'Sabra15G0121300' => 'sbr', 'SalBow2G0642' => 'sbo', 'SalBow5G2667' => 'sbo', 'SalBow5G4873' => 'sbo', 'SalBow8G2395' => 'sbo', 'Sc03g0003290' => 'sci', 'Sc10g0010130' => 'sci', 'Sc22g0003650' => 'sci', 'Sed0001603' => 'sed', 'Sed0004259' => 'sed', 'Sed0006789' => 'sed', 'Sed0011838' => 'sed', 'Sed0012964' => 'sed', 'Sed0016383' => 'sed', 'Sed0019010' => 'sed', 'Sed0020188' => 'sed', 'SEGI_04702' => 'sgi', 'SEGI_17231' => 'sgi', 'SEGI_18877' => 'sgi', 'SEGI_25196' => 'sgi', 'SEGI_25515' => 'sgi', 'SEGI_28445' => 'sgi', 'SEGI_37452' => 'sgi', 'SGA_v2.0_scaffold188G40336' => 'sas', 'SGA_v2.0_scaffold228G43247' => 'sas', 'SGA_v2.0_scaffold280G46853' => 'sas', 'SGA_v2.0_scaffold34G13808' => 'sas', 'SGA_v2.0_scaffold40G15576' => 'sas', 'SGA_v2.0_scaffold611G53188' => 'sas', 'SGA_v2.0_scaffold78G25461' => 'sas', 'SGA_v2.0_scaffold90G27888' => 'sas', 'SHI08601' => 'shi', 'SHI08606' => 'shi', 'SHI17117' => 'shi', 'SHI17119' => 'shi', 'SMO118G0201' => 'smo', 'SMO169G0247' => 'smo', 'SMO176G0006' => 'smo', 'SMO176G0015' => 'smo', 'SMO202G0006' => 'smo', 'SMO240G0050' => 'smo', 'SMO286G0009' => 'smo', 'SMO338G0033' => 'smo', 'SMO356G0533' => 'smo', 'SMO364G0382' => 'smo', 'SMO367G0166' => 'smo', 'SMO367G1098' => 'smo', 'Solyc01g009920.3' => 'sly', 'Solyc01g099300.3' => 'sly', 'Solyc02g084700.3' => 'sly', 'Solyc03g097520.3' => 'sly', 'Solyc06g071580.3' => 'sly', 'Solyc10g081760.3' => 'sly', 'Sopen01g005480' => 'spe', 'Sopen01g042850' => 'spe', 'Sopen02g029370' => 'spe', 'Sopen03g028280' => 'spe', 'Sopen06g027870' => 'spe', 'Sopen10g032270' => 'spe', 'Sp5g18180' => 'spa', 'Sp6g12880' => 'spa', 'Sp6g30850' => 'spa', 'Sp7g22960' => 'spa', 'Sp7g34010' => 'spa', 'SpUn1326_0010' => 'spa', 'TAR371G0242' => 'tar', 'TAR622G0638' => 'tar', 'TAR628G1548' => 'tar', 'TAR629G1079' => 'tar', 'TAR629G3413' => 'tar', 'THA.LOC104804249' => 'tha', 'THA.LOC104808315' => 'tha', 'THA.LOC104809238' => 'tha', 'THA.LOC104825484' => 'tha', 'Thecc.01G025500' => 'tca', 'Thecc.03G015800' => 'tca', 'Thecc.03G018000' => 'tca', 'Thecc.03G134800' => 'tca', 'Thecc.04G014700' => 'tca', 'Thhalv10006991m.g' => 'esa', 'Thhalv10012707m.g' => 'esa', 'Thhalv10015739m.g' => 'esa', 'Thhalv10024553m.g' => 'esa', 'Thhalv10024673m.g' => 'esa', 'Thhalv10029187m.g' => 'esa', 'TPR.G12971' => 'tpr', 'TPR.G29396' => 'tpr', 'TPR.G33376' => 'tpr', 'TPR.G35508' => 'tpr', 'TPR.G35516' => 'tpr', 'TPR.G37317' => 'tpr', 'TPR.G37389' => 'tpr', 'TPR.G37523' => 'tpr', 'TPR.G559' => 'tpr', 'TWI14G0070' => 'twi', 'TWI14G0729' => 'twi', 'TWI18G0596' => 'twi', 'TWI39G0780' => 'twi', 'TWI39G0850' => 'twi', 'TWI73G1052' => 'twi', 'unitig_52.g17485' => 'ugi', 'unitig_61.g26355' => 'ugi', 'vmacro01040' => 'vma', 'vmacro16731' => 'vma', 'vmacro18270' => 'vma', 'vmacro19142' => 'vma', 'vmacro19407' => 'vma', 'vmacro19408' => 'vma', 'vmacro21899' => 'vma', 'vmacro21900' => 'vma', 'vmacro21901' => 'vma', 'VMungo0251G0490' => 'vmu', 'VMungo0251G1748' => 'vmu', 'VMungo1309G0421' => 'vmu', 'Zm00001eb086500' => 'zma', 'Zm00001eb150680' => 'zma', 'Zm00001eb162330' => 'zma', 'Zm00001eb203130' => 'zma', 'Zm00001eb369480' => 'zma', 'Zm00001eb382340' => 'zma', 'Zm00001eb416360' => 'zma' ), 'gf_id' => 'HOM05D000902', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000902' ), 'data_identifier' => 'HOM05D000902', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000902', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '663', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02470' => 'bna', 'A01p16260' => 'bna', 'A02p01680' => 'bna', 'A03p16600' => 'bna', 'A03p55660' => 'bna', 'A03p64160' => 'bna', 'A03p64170' => 'bna', 'A08p31900' => 'bna', 'A09p59530' => 'bna', 'A10p08230' => 'bna', 'A10p25090' => 'bna', 'Aa31LG3G7100' => 'aar', 'Aa31LG3G7110' => 'aar', 'Aa31LG6G13160' => 'aar', 'Aa31LG7G10770' => 'aar', 'Aa31LG7G3830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2723' => 'aag', 'Actinidia08045' => 'ach', 'Actinidia08888' => 'ach', 'Actinidia18333' => 'ach', 'Actinidia19334' => 'ach', 'Actinidia25552' => 'ach', 'Actinidia26089' => 'ach', 'Actinidia30615' => 'ach', 'Actinidia30616' => 'ach', 'Actinidia33083' => 'ach', 'Actinidia35762' => 'ach', 'Ah.02g110620' => 'amhyb', 'Ah.11g046390' => 'amhyb', 'AL1G31670' => 'aly', 'AL6G23730' => 'aly', 'AL7G14740' => 'aly', 'AL7G14750' => 'aly', 'AL7G14760' => 'aly', 'AL7G28220' => 'aly', 'AL8G24940' => 'aly', 'Aqoxy3G01665' => 'aox', 'Aqoxy3G02853' => 'aox', 'Aqoxy5G01513' => 'aox', 'Aqoxy5G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8SKA4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ75LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKDA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0LJZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7REX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZP4YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWX7I5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2QKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS0L9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPCD8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q161UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC7XCF' => 'arhy', 'AT1G19100' => 'ath', 'AT4G24970' => 'ath', 'AT4G36270' => 'ath', 'AT4G36280' => 'ath', 'AT4G36290' => 'ath', 'AT5G13130' => 'ath', 'AT5G50780' => 'ath', 'ATR0582G266' => 'atr', 'ATR0661G195' => 'atr', 'ATR1152G031' => 'atr', 'Atru.chr11.2382' => 'acertr', 'Atru.chr12.2337' => 'acertr', 'Atru.chr3.744' => 'acertr', 'Atru.chr6.1870' => 'acertr', 'Atru.chr9.2515' => 'acertr', 'AUR62004120' => 'cqu', 'AUR62005667' => 'cqu', 'AUR62007634' => 'cqu', 'AUR62008186' => 'cqu', 'AUR62008187' => 'cqu', 'AUR62008188' => 'cqu', 'AUR62027954' => 'cqu', 'AUR62028766' => 'cqu', 'AUR62028767' => 'cqu', 'AUR62028768' => 'cqu', 'AUR62028886' => 'cqu', 'AUR62029563' => 'cqu', 'AUR62038832' => 'cqu', 'BcaB01g04149' => 'bca', 'BcaB03g12940' => 'bca', 'BcaB03g13090' => 'bca', 'BcaB03g14466' => 'bca', 'BcaB05g24035' => 'bca', 'BcaC01g06050' => 'bca', 'BcaC04g19148' => 'bca', 'BcaC04g20761' => 'bca', 'BcaC06g32845' => 'bca', 'BcaC07g41274' => 'bca', 'BcaC09g50827' => 'bca', 'BcaNung00741' => 'bca', 'BcaNung00742' => 'bca', 'BcaNung01859' => 'bca', 'BcaNung03985' => 'bca', 'BcaNung03989' => 'bca', 'BcaNung05661' => 'bca', 'BolC1t00257H' => 'bol', 'BolC1t01956H' => 'bol', 'BolC2t06534H' => 'bol', 'BolC3t14334H' => 'bol', 'BolC5t30451H' => 'bol', 'BolC7t45880H' => 'bol', 'BolC7t46586H' => 'bol', 'BolC8t49301H' => 'bol', 'BolC8t51837H' => 'bol', 'BolC9t56822H' => 'bol', 'BolC9t59235H' => 'bol', 'BraA01t00234Z' => 'bra', 'BraA01t01563Z' => 'bra', 'BraA02t05147Z' => 'bra', 'BraA03t10947Z' => 'bra', 'BraA03t14633Z' => 'bra', 'BraA08t35112Z' => 'bra', 'BraA09t41330Z' => 'bra', 'BraA10t44570Z' => 'bra', 'C01p02670' => 'bna', 'C01p20260' => 'bna', 'C02p05890' => 'bna', 'C03p19530' => 'bna', 'C05p17470' => 'bna', 'C07p53900' => 'bna', 'C07p61630' => 'bna', 'C08p16800' => 'bna', 'C08p42810' => 'bna', 'C09p39480' => 'bna', 'C09p63980' => 'bna', 'CAN.G1001.7' => 'can', 'CAN.G1034.55' => 'can', 'CAN.G143.7' => 'can', 'CAN.G3340.1' => 'can', 'CAN.G358.19' => 'can', 'CAN.G373.2' => 'can', 'CAN.G674.16' => 'can', 'CAN.G674.17' => 'can', 'CAN.G674.18' => 'can', 'CAN.G732.2' => 'can', 'CAN.G732.3' => 'can', 'CAN.G993.39' => 'can', 'CANSAT01G2052' => 'cansat', 'CANSAT80G0070' => 'cansat', 'CANSAT80G0483' => 'cansat', 'CANSAT80G0625' => 'cansat', 'CARHR019690' => 'chi', 'CARHR080280' => 'chi', 'CARHR152750' => 'chi', 'CARHR152760' => 'chi', 'CARHR152770' => 'chi', 'CARHR200340' => 'chi', 'CARHR232370' => 'chi', 'CARHR244670' => 'chi', 'CARHR244680' => 'chi', 'CARHR257520' => 'chi', 'Carub.0001s1872' => 'cru', 'Carub.0006s1130' => 'cru', 'Carub.0007s0396' => 'cru', 'Carub.0007s0397' => 'cru', 'Carub.0007s1608' => 'cru', 'Carub.0008s1068' => 'cru', 'Carub.0008s1077' => 'cru', 'Ca_16158_v3' => 'car', 'Ca_17571_v3' => 'car', 'Ca_21936_v3' => 'car', 'Ca_22350_v3' => 'car', 'CBR_g22445' => 'cbr', 'CBR_g26290' => 'cbr', 'Cc04_g09610' => 'ccan', 'Cc04_g12280' => 'ccan', 'Cc07_g10230' => 'ccan', 'CDE02G0093' => 'cde', 'CDE02G0701' => 'cde', 'CDE04G1050' => 'cde', 'CDE05G1833' => 'cde', 'CDE05G3058' => 'cde', 'CDE05G3380' => 'cde', 'CDE06G0536' => 'cde', 'Cfa006923' => 'cfa', 'Cfa009402' => 'cfa', 'Cfa018751' => 'cfa', 'Cfa019164' => 'cfa', 'Cfa022935' => 'cfa', 'Ciclev10019081m.g' => 'ccl', 'Ciclev10025076m.g' => 'ccl', 'Ciclev10030712m.g' => 'ccl', 'Ciclev10033760m.g' => 'ccl', 'CiPaw.05G105600' => 'cil', 'CiPaw.08G136700' => 'cil', 'CiPaw.11G003900' => 'cil', 'CiPaw.11G023700' => 'cil', 'CiPaw.12G003700' => 'cil', 'ClCG06G017100' => 'cla', 'ClCG06G018110' => 'cla', 'ClCG07G008800' => 'cla', 'ClCG07G015330' => 'cla', 'COL.COLO4_13698' => 'col', 'COL.COLO4_16659' => 'col', 'COL.COLO4_21986' => 'col', 'COL.COLO4_24049' => 'col', 'COL.COLO4_29061' => 'col', 'COL.COLO4_29075' => 'col', 'COL.COLO4_30094' => 'col', 'Cpa.g.c33689' => 'cpa', 'Cpa.g.sc108.39' => 'cpa', 'Cpa.g.sc108.41' => 'cpa', 'Cpa.g.sc1163.1' => 'cpa', 'Cpa.g.sc4.155' => 'cpa', 'Cpa.g.sc6.194' => 'cpa', 'CsaV3_1G000340' => 'csa', 'CsaV3_1G001400' => 'csa', 'CsaV3_4G002220' => 'csa', 'CsaV3_4G005370' => 'csa', 'CSS0007487' => 'camsi', 'CSS0008066' => 'camsi', 'CSS0009120' => 'camsi', 'CSS0015512' => 'camsi', 'CSS0022409' => 'camsi', 'CSS0025358' => 'camsi', 'CSS0044547' => 'camsi', 'DCAR_013057' => 'dca', 'DCAR_015058' => 'dca', 'DCAR_016027' => 'dca', 'DCAR_017327' => 'dca', 'DCAR_020743' => 'dca', 'DCAR_026157' => 'dca', 'DCAR_032339' => 'dca', 'DCAR_032340' => 'dca', 'Dinv11200' => 'din', 'Dinv11201' => 'din', 'Dinv20631' => 'din', 'Dinv23182' => 'din', 'Dinv33466' => 'din', 'Dinv33583' => 'din', 'Dinv38565' => 'din', 'Duzib068G0200' => 'dzi', 'Duzib147G0132' => 'dzi', 'Duzib147G0635' => 'dzi', 'Duzib205G1670' => 'dzi', 'Duzib251G0606' => 'dzi', 'ECA232G3336' => 'eca', 'ECA232G3763' => 'eca', 'ECA232G4845' => 'eca', 'ECA234G1607' => 'eca', 'ECA246G0932' => 'eca', 'ECA247G0781' => 'eca', 'ECA247G1932' => 'eca', 'ECA247G2079' => 'eca', 'ECA247G3338' => 'eca', 'ECA247G4115' => 'eca', 'EL10Ac3g06552' => 'bvu', 'EL10Ac5g10721' => 'bvu', 'EL10Ac5g10722' => 'bvu', 'EL10Ac5g10723' => 'bvu', 'EL10Ac5g11361' => 'bvu', 'EL10Ac6g13553' => 'bvu', 'EL10As8g23872' => 'bvu', 'Eucgr.B00250' => 'egr', 'Eucgr.B00251' => 'egr', 'Eucgr.B03533' => 'egr', 'Eucgr.I02381' => 'egr', 'Eucgr.K02700' => 'egr', 'FAN02G0174' => 'fan', 'FAN02G3146' => 'fan', 'FAN04G1672' => 'fan', 'FAN04G2273' => 'fan', 'FAN05G2791' => 'fan', 'FAN05G4035' => 'fan', 'FAN07G0834' => 'fan', 'FAN08G1198' => 'fan', 'FAN09G4182' => 'fan', 'FAN12G0496' => 'fan', 'FAN13G1027' => 'fan', 'FAN13G2951' => 'fan', 'FAN14G0705' => 'fan', 'FAN14G0720' => 'fan', 'FAN17G0201' => 'fan', 'FAN17G2665' => 'fan', 'FAN18G1456' => 'fan', 'FAN18G1525' => 'fan', 'FAN18G3500' => 'fan', 'FAN28G2670' => 'fan', 'FvH4_1g12391' => 'fve', 'FvH4_4g23220' => 'fve', 'FvH4_5g08810' => 'fve', 'FvH4_5g28960' => 'fve', 'FvH4_6g42820' => 'fve', 'FvH4_6g51110' => 'fve', 'Glyma.02G051802' => 'gma', 'Glyma.04G185300' => 'gma', 'Glyma.05G202900' => 'gma', 'Glyma.08G010300' => 'gma', 'Glyma.16G131900' => 'gma', 'Glyma.17G087900' => 'gma', 'Gohir.A07G048600' => 'ghi', 'Gohir.A11G179000' => 'ghi', 'Gohir.A12G140900' => 'ghi', 'Gohir.A12G140950' => 'ghi', 'Gohir.A12G191700' => 'ghi', 'Gohir.A13G086300' => 'ghi', 'Gohir.D07G052900' => 'ghi', 'Gohir.D11G186600' => 'ghi', 'Gohir.D12G145575' => 'ghi', 'Gohir.D12G145650' => 'ghi', 'Gohir.D12G145725' => 'ghi', 'Gohir.D12G194050' => 'ghi', 'Gohir.D13G091800' => 'ghi', 'Gorai.001G055900' => 'gra', 'Gorai.007G198400' => 'gra', 'Gorai.008G157000' => 'gra', 'Gorai.008G157100' => 'gra', 'Gorai.008G208700' => 'gra', 'Gorai.010G138700' => 'gra', 'GSVIVG01000977001' => 'vvi', 'GSVIVG01007708001' => 'vvi', 'GSVIVG01008587001' => 'vvi', 'GSVIVG01018849001' => 'vvi', 'GSVIVG01032432001' => 'vvi', 'HanXRQChr02g0034131' => 'han', 'HanXRQChr02g0035981' => 'han', 'HanXRQChr02g0035991' => 'han', 'HanXRQChr05g0155611' => 'han', 'HanXRQChr05g0155621' => 'han', 'HanXRQChr08g0236501' => 'han', 'HanXRQChr09g0261321' => 'han', 'HanXRQChr09g0272081' => 'han', 'HanXRQChr10g0310741' => 'han', 'HanXRQChr11g0325591' => 'han', 'HanXRQChr12g0385691' => 'han', 'HanXRQChr13g0387801' => 'han', 'HanXRQChr15g0463011' => 'han', 'Haze_03826' => 'cav', 'Haze_03827' => 'cav', 'Haze_07183' => 'cav', 'Haze_07537' => 'cav', 'Haze_07539' => 'cav', 'Haze_12461' => 'cav', 'Haze_16115' => 'cav', 'Haze_16808' => 'cav', 'Haze_18531' => 'cav', 'Hma1.2p1_0046F.1_g026700' => 'hma', 'Hma1.2p1_0046F.1_g026710' => 'hma', 'Hma1.2p1_0168F.1_g074340' => 'hma', 'Hma1.2p1_0266F.1_g107030' => 'hma', 'Hma1.2p1_0266F.1_g107060' => 'hma', 'Hma1.2p1_0275F.1_g110510' => 'hma', 'Hma1.2p1_0592F.1_g185490' => 'hma', 'Hma1.2p1_0592F.1_g185500' => 'hma', 'Hma1.2p1_0592F.1_g185510' => 'hma', 'Hma1.2p1_0592F.1_g185520' => 'hma', 'Hma1.2p1_0592F.1_g185530' => 'hma', 'Hma1.2p1_0818F.1_g223450' => 'hma', 'HPP92_009708' => 'vpl', 'HPP92_009793' => 'vpl', 'HPP92_009796' => 'vpl', 'HPP92_009797' => 'vpl', 'HPP92_014940' => 'vpl', 'HPP92_014988' => 'vpl', 'Hund02463' => 'sun', 'Hund02760' => 'sun', 'Hund05071' => 'sun', 'Hund10108' => 'sun', 'Hund11204' => 'sun', 'Hund14016' => 'sun', 'Hund16464' => 'sun', 'Lalb_Chr09g0333391' => 'lal', 'Lalb_Chr11g0070461' => 'lal', 'Lalb_Chr12g0201671' => 'lal', 'Lalb_Chr13g0297161' => 'lal', 'Lj1g0002823' => 'lja', 'Lj3C1074T6' => 'lonja', 'Lj4A212T28' => 'lonja', 'Lj4g0005516' => 'lja', 'Lj4g0013705' => 'lja', 'Lj4g0027865' => 'lja', 'Lj5C92G16' => 'lonja', 'Lj5C92T12' => 'lonja', 'Lj7C596T3' => 'lonja', 'Lj9A446G59' => 'lonja', 'Lj9A482G21' => 'lonja', 'Lsat_1_v5_gn_1_28261' => 'lsa', 'Lsat_1_v5_gn_1_28281' => 'lsa', 'Lsat_1_v5_gn_1_32721' => 'lsa', 'Lsat_1_v5_gn_4_151760' => 'lsa', 'Lsat_1_v5_gn_4_2120' => 'lsa', 'Lsat_1_v5_gn_4_75761' => 'lsa', 'Lsat_1_v5_gn_5_10920' => 'lsa', 'Manes.02G099900' => 'mes', 'Manes.11G096200' => 'mes', 'Manes.12G007200' => 'mes', 'Manes.14G048300' => 'mes', 'Manes.17G114700' => 'mes', 'Mapoly0002s0070' => 'mpo', 'Mapoly0029s0099' => 'mpo', 'MBI07_g24742_MAGBIO' => 'mbi', 'MBI10_g27988_MAGBIO' => 'mbi', 'MBI11_g13057_MAGBIO' => 'mbi', 'MD02G1137200' => 'mdo', 'MD06G1137200' => 'mdo', 'MD07G1122300' => 'mdo', 'MD09G1078200' => 'mdo', 'MD13G1123700' => 'mdo', 'MD14G1151900' => 'mdo', 'MD17G1030900' => 'mdo', 'MD17G1068200' => 'mdo', 'MD17G1068600' => 'mdo', 'Medtr3g077540' => 'mtr', 'Medtr4g105530' => 'mtr', 'Medtr8g076580' => 'mtr', 'Medtr8g076590' => 'mtr', 'Medtr8g096410' => 'mtr', 'MELO3C016411.2' => 'cme', 'MELO3C017780.2' => 'cme', 'MELO3C022560.2' => 'cme', 'MELO3C026187.2' => 'cme', 'MELO3C026286.2' => 'cme', 'MELO3C032854.2' => 'cme', 'Migut.H02495' => 'egut', 'Migut.I00561' => 'egut', 'Migut.K01015' => 'egut', 'Migut.K01016' => 'egut', 'Migut.L00743' => 'egut', 'Migut.L00744' => 'egut', 'Migut.L00746' => 'egut', 'Migut.L00798' => 'egut', 'Migut.L00799' => 'egut', 'Migut.N02096' => 'egut', 'MSTRG.11259' => 'ama', 'MSTRG.23142' => 'ama', 'MSTRG.2499' => 'ama', 'Nitab4.5_0000003g0730' => 'nta', 'Nitab4.5_0000137g0020' => 'nta', 'Nitab4.5_0000721g0210' => 'nta', 'Nitab4.5_0000723g0050' => 'nta', 'Nitab4.5_0000913g0070' => 'nta', 'Nitab4.5_0001332g0040' => 'nta', 'Nitab4.5_0001771g0050' => 'nta', 'Nitab4.5_0001918g0050' => 'nta', 'Nitab4.5_0002686g0030' => 'nta', 'Nitab4.5_0003156g0020' => 'nta', 'Nitab4.5_0003383g0040' => 'nta', 'Nitab4.5_0003918g0010' => 'nta', 'Nitab4.5_0006760g0010' => 'nta', 'Nn1g05981' => 'nnu', 'Nn1g06288' => 'nnu', 'Nn3g16371' => 'nnu', 'Nn3g16786' => 'nnu', 'Nn4g22232' => 'nnu', 'Oeu005144.1' => 'oeu', 'Oeu005145.1' => 'oeu', 'Oeu011348.1' => 'oeu', 'Oeu016415.1' => 'oeu', 'Oeu023501.1' => 'oeu', 'Oeu044473.1' => 'oeu', 'Oeu048892.2' => 'oeu', 'Os01g0549200' => 'osa', 'Os02g0469300' => 'osa', 'Os04g0311100' => 'osa', 'Os06g0474900' => 'osa', 'Os10g0181700' => 'osa', 'Os11g0454800' => 'osa', 'Peaxi162Scf00037g00714' => 'pax', 'Peaxi162Scf00084g01217' => 'pax', 'Peaxi162Scf00257g00217' => 'pax', 'Peaxi162Scf00516g00215' => 'pax', 'Peaxi162Scf00689g00123' => 'pax', 'PGR044G2719' => 'pgr', 'PGR083G1360' => 'pgr', 'PGR102G2849' => 'pgr', 'PGR119G2534' => 'pgr', 'PGSC0003DMG400003538' => 'stu', 'PGSC0003DMG400028138' => 'stu', 'PGSC0003DMG400031732' => 'stu', 'PGSC0003DMG400038165' => 'stu', 'Phvul.002G284600' => 'pvu', 'Phvul.003G258200' => 'pvu', 'Phvul.009G176500' => 'pvu', 'Potri.003G167201' => 'ptr', 'Potri.005G118400' => 'ptr', 'Potri.012G089000' => 'ptr', 'Potri.012G102800' => 'ptr', 'Potri.015G079400' => 'ptr', 'Potri.015G100900' => 'ptr', 'Pp3c14_9810' => 'ppa', 'Pp3c15_10450' => 'ppa', 'Pp3c20_19150' => 'ppa', 'Pp3c23_12740' => 'ppa', 'Pp3c23_6310' => 'ppa', 'Pp3c24_3720' => 'ppa', 'Pp3c27_2580' => 'ppa', 'Pp3c9_8990' => 'ppa', 'PRCOL_00002854' => 'pco', 'Prupe.1G221200' => 'ppe', 'Prupe.3G289000' => 'ppe', 'Prupe.5G147000' => 'ppe', 'Prupe.6G157300' => 'ppe', 'Prupe.7G163400' => 'ppe', 'Psat0s2177g0040' => 'psa', 'Psat3g174760' => 'psa', 'Psat3g192160' => 'psa', 'Psat4g058520' => 'psa', 'Psat4g096840' => 'psa', 'Psat7g037320' => 'psa', 'PSO017G1274' => 'pso', 'PSO017G5166' => 'pso', 'PSO063G4558' => 'pso', 'PSO170G4458' => 'pso', 'PSO170G5005' => 'pso', 'PSO210G6156' => 'pso', 'PSO210G6635' => 'pso', 'PSO210G7397' => 'pso', 'PSO210G7700' => 'pso', 'PSO455G0035' => 'pso', 'PSO455G0180' => 'pso', 'PSO478G4515' => 'pso', 'PSO832G1305' => 'pso', 'PSO832G3489' => 'pso', 'QL02p075247' => 'qlo', 'QL03p051148' => 'qlo', 'QL05p010313' => 'qlo', 'QL06p034627' => 'qlo', 'QL10p001889' => 'qlo', 'QL10p010846' => 'qlo', 'RcHm_v2.0_Chr1g0350621' => 'rch', 'RcHm_v2.0_Chr1g0350641' => 'rch', 'RcHm_v2.0_Chr2g0092891' => 'rch', 'RcHm_v2.0_Chr2g0100251' => 'rch', 'RcHm_v2.0_Chr2g0158661' => 'rch', 'RcHm_v2.0_Chr2g0172741' => 'rch', 'RcHm_v2.0_Chr4g0429571' => 'rch', 'RcHm_v2.0_Chr5g0042471' => 'rch', 'RcHm_v2.0_Chr7g0189451' => 'rch', 'Rhsim08G0052000' => 'rsi', 'Rhsim08G0174400' => 'rsi', 'Rhsim08G0193200' => 'rsi', 'Rhsim10G0214800' => 'rsi', 'Rhsim10G0214900' => 'rsi', 'Rhsim10G0215000' => 'rsi', 'Rhsim12G0022900' => 'rsi', 'Rhsim12G0177500' => 'rsi', 'Rhsim12G0177700' => 'rsi', 'Sabra03G0122600' => 'sbr', 'Sabra05G0097400' => 'sbr', 'Sabra12G0064100' => 'sbr', 'Sabra15G0121300' => 'sbr', 'SalBow2G0642' => 'sbo', 'SalBow5G2667' => 'sbo', 'SalBow5G4873' => 'sbo', 'SalBow8G2395' => 'sbo', 'Sc03g0003290' => 'sci', 'Sc10g0010130' => 'sci', 'Sc22g0003650' => 'sci', 'Sed0001603' => 'sed', 'Sed0004259' => 'sed', 'Sed0006789' => 'sed', 'Sed0011838' => 'sed', 'Sed0012964' => 'sed', 'Sed0016383' => 'sed', 'Sed0019010' => 'sed', 'Sed0020188' => 'sed', 'SEGI_04702' => 'sgi', 'SEGI_17231' => 'sgi', 'SEGI_18877' => 'sgi', 'SEGI_25196' => 'sgi', 'SEGI_25515' => 'sgi', 'SEGI_28445' => 'sgi', 'SEGI_37452' => 'sgi', 'SGA_v2.0_scaffold188G40336' => 'sas', 'SGA_v2.0_scaffold228G43247' => 'sas', 'SGA_v2.0_scaffold280G46853' => 'sas', 'SGA_v2.0_scaffold34G13808' => 'sas', 'SGA_v2.0_scaffold40G15576' => 'sas', 'SGA_v2.0_scaffold611G53188' => 'sas', 'SGA_v2.0_scaffold78G25461' => 'sas', 'SGA_v2.0_scaffold90G27888' => 'sas', 'SHI08601' => 'shi', 'SHI08606' => 'shi', 'SHI17117' => 'shi', 'SHI17119' => 'shi', 'SMO118G0201' => 'smo', 'SMO169G0247' => 'smo', 'SMO176G0006' => 'smo', 'SMO176G0015' => 'smo', 'SMO202G0006' => 'smo', 'SMO240G0050' => 'smo', 'SMO286G0009' => 'smo', 'SMO338G0033' => 'smo', 'SMO356G0533' => 'smo', 'SMO364G0382' => 'smo', 'SMO367G0166' => 'smo', 'SMO367G1098' => 'smo', 'Solyc01g009920.3' => 'sly', 'Solyc01g099300.3' => 'sly', 'Solyc02g084700.3' => 'sly', 'Solyc03g097520.3' => 'sly', 'Solyc06g071580.3' => 'sly', 'Solyc10g081760.3' => 'sly', 'Sopen01g005480' => 'spe', 'Sopen01g042850' => 'spe', 'Sopen02g029370' => 'spe', 'Sopen03g028280' => 'spe', 'Sopen06g027870' => 'spe', 'Sopen10g032270' => 'spe', 'Sp5g18180' => 'spa', 'Sp6g12880' => 'spa', 'Sp6g30850' => 'spa', 'Sp7g22960' => 'spa', 'Sp7g34010' => 'spa', 'SpUn1326_0010' => 'spa', 'TAR371G0242' => 'tar', 'TAR622G0638' => 'tar', 'TAR628G1548' => 'tar', 'TAR629G1079' => 'tar', 'TAR629G3413' => 'tar', 'THA.LOC104804249' => 'tha', 'THA.LOC104808315' => 'tha', 'THA.LOC104809238' => 'tha', 'THA.LOC104825484' => 'tha', 'Thecc.01G025500' => 'tca', 'Thecc.03G015800' => 'tca', 'Thecc.03G018000' => 'tca', 'Thecc.03G134800' => 'tca', 'Thecc.04G014700' => 'tca', 'Thhalv10006991m.g' => 'esa', 'Thhalv10012707m.g' => 'esa', 'Thhalv10015739m.g' => 'esa', 'Thhalv10024553m.g' => 'esa', 'Thhalv10024673m.g' => 'esa', 'Thhalv10029187m.g' => 'esa', 'TPR.G12971' => 'tpr', 'TPR.G29396' => 'tpr', 'TPR.G33376' => 'tpr', 'TPR.G35508' => 'tpr', 'TPR.G35516' => 'tpr', 'TPR.G37317' => 'tpr', 'TPR.G37389' => 'tpr', 'TPR.G37523' => 'tpr', 'TPR.G559' => 'tpr', 'TWI14G0070' => 'twi', 'TWI14G0729' => 'twi', 'TWI18G0596' => 'twi', 'TWI39G0780' => 'twi', 'TWI39G0850' => 'twi', 'TWI73G1052' => 'twi', 'unitig_52.g17485' => 'ugi', 'unitig_61.g26355' => 'ugi', 'vmacro01040' => 'vma', 'vmacro16731' => 'vma', 'vmacro18270' => 'vma', 'vmacro19142' => 'vma', 'vmacro19407' => 'vma', 'vmacro19408' => 'vma', 'vmacro21899' => 'vma', 'vmacro21900' => 'vma', 'vmacro21901' => 'vma', 'VMungo0251G0490' => 'vmu', 'VMungo0251G1748' => 'vmu', 'VMungo1309G0421' => 'vmu', 'Zm00001eb086500' => 'zma', 'Zm00001eb150680' => 'zma', 'Zm00001eb162330' => 'zma', 'Zm00001eb203130' => 'zma', 'Zm00001eb369480' => 'zma', 'Zm00001eb382340' => 'zma', 'Zm00001eb416360' => 'zma' ) $gf_id = 'HOM05D000902' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000902' ) $data_identifier = 'HOM05D000902' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 13, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 10, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 6, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 9, 'hma' => (int) 12, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 4, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 6, 'ppa' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 6, 'rch' => (int) 9, 'rsi' => (int) 9, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 12, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 3, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416360' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000902', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '663', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02470' => 'bna', 'A01p16260' => 'bna', 'A02p01680' => 'bna', 'A03p16600' => 'bna', 'A03p55660' => 'bna', 'A03p64160' => 'bna', 'A03p64170' => 'bna', 'A08p31900' => 'bna', 'A09p59530' => 'bna', 'A10p08230' => 'bna', 'A10p25090' => 'bna', 'Aa31LG3G7100' => 'aar', 'Aa31LG3G7110' => 'aar', 'Aa31LG6G13160' => 'aar', 'Aa31LG7G10770' => 'aar', 'Aa31LG7G3830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2723' => 'aag', 'Actinidia08045' => 'ach', 'Actinidia08888' => 'ach', 'Actinidia18333' => 'ach', 'Actinidia19334' => 'ach', 'Actinidia25552' => 'ach', 'Actinidia26089' => 'ach', 'Actinidia30615' => 'ach', 'Actinidia30616' => 'ach', 'Actinidia33083' => 'ach', 'Actinidia35762' => 'ach', 'Ah.02g110620' => 'amhyb', 'Ah.11g046390' => 'amhyb', 'AL1G31670' => 'aly', 'AL6G23730' => 'aly', 'AL7G14740' => 'aly', 'AL7G14750' => 'aly', 'AL7G14760' => 'aly', 'AL7G28220' => 'aly', 'AL8G24940' => 'aly', 'Aqoxy3G01665' => 'aox', 'Aqoxy3G02853' => 'aox', 'Aqoxy5G01513' => 'aox', 'Aqoxy5G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8SKA4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ75LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKDA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0LJZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7REX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZP4YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWX7I5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2QKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS0L9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPCD8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q161UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC7XCF' => 'arhy', 'AT1G19100' => 'ath', 'AT4G24970' => 'ath', 'AT4G36270' => 'ath', 'AT4G36280' => 'ath', 'AT4G36290' => 'ath', 'AT5G13130' => 'ath', 'AT5G50780' => 'ath', 'ATR0582G266' => 'atr', 'ATR0661G195' => 'atr', 'ATR1152G031' => 'atr', 'Atru.chr11.2382' => 'acertr', 'Atru.chr12.2337' => 'acertr', 'Atru.chr3.744' => 'acertr', 'Atru.chr6.1870' => 'acertr', 'Atru.chr9.2515' => 'acertr', 'AUR62004120' => 'cqu', 'AUR62005667' => 'cqu', 'AUR62007634' => 'cqu', 'AUR62008186' => 'cqu', 'AUR62008187' => 'cqu', 'AUR62008188' => 'cqu', 'AUR62027954' => 'cqu', 'AUR62028766' => 'cqu', 'AUR62028767' => 'cqu', 'AUR62028768' => 'cqu', 'AUR62028886' => 'cqu', 'AUR62029563' => 'cqu', 'AUR62038832' => 'cqu', 'BcaB01g04149' => 'bca', 'BcaB03g12940' => 'bca', 'BcaB03g13090' => 'bca', 'BcaB03g14466' => 'bca', 'BcaB05g24035' => 'bca', 'BcaC01g06050' => 'bca', 'BcaC04g19148' => 'bca', 'BcaC04g20761' => 'bca', 'BcaC06g32845' => 'bca', 'BcaC07g41274' => 'bca', 'BcaC09g50827' => 'bca', 'BcaNung00741' => 'bca', 'BcaNung00742' => 'bca', 'BcaNung01859' => 'bca', 'BcaNung03985' => 'bca', 'BcaNung03989' => 'bca', 'BcaNung05661' => 'bca', 'BolC1t00257H' => 'bol', 'BolC1t01956H' => 'bol', 'BolC2t06534H' => 'bol', 'BolC3t14334H' => 'bol', 'BolC5t30451H' => 'bol', 'BolC7t45880H' => 'bol', 'BolC7t46586H' => 'bol', 'BolC8t49301H' => 'bol', 'BolC8t51837H' => 'bol', 'BolC9t56822H' => 'bol', 'BolC9t59235H' => 'bol', 'BraA01t00234Z' => 'bra', 'BraA01t01563Z' => 'bra', 'BraA02t05147Z' => 'bra', 'BraA03t10947Z' => 'bra', 'BraA03t14633Z' => 'bra', 'BraA08t35112Z' => 'bra', 'BraA09t41330Z' => 'bra', 'BraA10t44570Z' => 'bra', 'C01p02670' => 'bna', 'C01p20260' => 'bna', 'C02p05890' => 'bna', 'C03p19530' => 'bna', 'C05p17470' => 'bna', 'C07p53900' => 'bna', 'C07p61630' => 'bna', 'C08p16800' => 'bna', 'C08p42810' => 'bna', 'C09p39480' => 'bna', 'C09p63980' => 'bna', 'CAN.G1001.7' => 'can', 'CAN.G1034.55' => 'can', 'CAN.G143.7' => 'can', 'CAN.G3340.1' => 'can', 'CAN.G358.19' => 'can', 'CAN.G373.2' => 'can', 'CAN.G674.16' => 'can', 'CAN.G674.17' => 'can', 'CAN.G674.18' => 'can', 'CAN.G732.2' => 'can', 'CAN.G732.3' => 'can', 'CAN.G993.39' => 'can', 'CANSAT01G2052' => 'cansat', 'CANSAT80G0070' => 'cansat', 'CANSAT80G0483' => 'cansat', 'CANSAT80G0625' => 'cansat', 'CARHR019690' => 'chi', 'CARHR080280' => 'chi', 'CARHR152750' => 'chi', 'CARHR152760' => 'chi', 'CARHR152770' => 'chi', 'CARHR200340' => 'chi', 'CARHR232370' => 'chi', 'CARHR244670' => 'chi', 'CARHR244680' => 'chi', 'CARHR257520' => 'chi', 'Carub.0001s1872' => 'cru', 'Carub.0006s1130' => 'cru', 'Carub.0007s0396' => 'cru', 'Carub.0007s0397' => 'cru', 'Carub.0007s1608' => 'cru', 'Carub.0008s1068' => 'cru', 'Carub.0008s1077' => 'cru', 'Ca_16158_v3' => 'car', 'Ca_17571_v3' => 'car', 'Ca_21936_v3' => 'car', 'Ca_22350_v3' => 'car', 'CBR_g22445' => 'cbr', 'CBR_g26290' => 'cbr', 'Cc04_g09610' => 'ccan', 'Cc04_g12280' => 'ccan', 'Cc07_g10230' => 'ccan', 'CDE02G0093' => 'cde', 'CDE02G0701' => 'cde', 'CDE04G1050' => 'cde', 'CDE05G1833' => 'cde', 'CDE05G3058' => 'cde', 'CDE05G3380' => 'cde', 'CDE06G0536' => 'cde', 'Cfa006923' => 'cfa', 'Cfa009402' => 'cfa', 'Cfa018751' => 'cfa', 'Cfa019164' => 'cfa', 'Cfa022935' => 'cfa', 'Ciclev10019081m.g' => 'ccl', 'Ciclev10025076m.g' => 'ccl', 'Ciclev10030712m.g' => 'ccl', 'Ciclev10033760m.g' => 'ccl', 'CiPaw.05G105600' => 'cil', 'CiPaw.08G136700' => 'cil', 'CiPaw.11G003900' => 'cil', 'CiPaw.11G023700' => 'cil', 'CiPaw.12G003700' => 'cil', 'ClCG06G017100' => 'cla', 'ClCG06G018110' => 'cla', 'ClCG07G008800' => 'cla', 'ClCG07G015330' => 'cla', 'COL.COLO4_13698' => 'col', 'COL.COLO4_16659' => 'col', 'COL.COLO4_21986' => 'col', 'COL.COLO4_24049' => 'col', 'COL.COLO4_29061' => 'col', 'COL.COLO4_29075' => 'col', 'COL.COLO4_30094' => 'col', 'Cpa.g.c33689' => 'cpa', 'Cpa.g.sc108.39' => 'cpa', 'Cpa.g.sc108.41' => 'cpa', 'Cpa.g.sc1163.1' => 'cpa', 'Cpa.g.sc4.155' => 'cpa', 'Cpa.g.sc6.194' => 'cpa', 'CsaV3_1G000340' => 'csa', 'CsaV3_1G001400' => 'csa', 'CsaV3_4G002220' => 'csa', 'CsaV3_4G005370' => 'csa', 'CSS0007487' => 'camsi', 'CSS0008066' => 'camsi', 'CSS0009120' => 'camsi', 'CSS0015512' => 'camsi', 'CSS0022409' => 'camsi', 'CSS0025358' => 'camsi', 'CSS0044547' => 'camsi', 'DCAR_013057' => 'dca', 'DCAR_015058' => 'dca', 'DCAR_016027' => 'dca', 'DCAR_017327' => 'dca', 'DCAR_020743' => 'dca', 'DCAR_026157' => 'dca', 'DCAR_032339' => 'dca', 'DCAR_032340' => 'dca', 'Dinv11200' => 'din', 'Dinv11201' => 'din', 'Dinv20631' => 'din', 'Dinv23182' => 'din', 'Dinv33466' => 'din', 'Dinv33583' => 'din', 'Dinv38565' => 'din', 'Duzib068G0200' => 'dzi', 'Duzib147G0132' => 'dzi', 'Duzib147G0635' => 'dzi', 'Duzib205G1670' => 'dzi', 'Duzib251G0606' => 'dzi', 'ECA232G3336' => 'eca', 'ECA232G3763' => 'eca', 'ECA232G4845' => 'eca', 'ECA234G1607' => 'eca', 'ECA246G0932' => 'eca', 'ECA247G0781' => 'eca', 'ECA247G1932' => 'eca', 'ECA247G2079' => 'eca', 'ECA247G3338' => 'eca', 'ECA247G4115' => 'eca', 'EL10Ac3g06552' => 'bvu', 'EL10Ac5g10721' => 'bvu', 'EL10Ac5g10722' => 'bvu', 'EL10Ac5g10723' => 'bvu', 'EL10Ac5g11361' => 'bvu', 'EL10Ac6g13553' => 'bvu', 'EL10As8g23872' => 'bvu', 'Eucgr.B00250' => 'egr', 'Eucgr.B00251' => 'egr', 'Eucgr.B03533' => 'egr', 'Eucgr.I02381' => 'egr', 'Eucgr.K02700' => 'egr', 'FAN02G0174' => 'fan', 'FAN02G3146' => 'fan', 'FAN04G1672' => 'fan', 'FAN04G2273' => 'fan', 'FAN05G2791' => 'fan', 'FAN05G4035' => 'fan', 'FAN07G0834' => 'fan', 'FAN08G1198' => 'fan', 'FAN09G4182' => 'fan', 'FAN12G0496' => 'fan', 'FAN13G1027' => 'fan', 'FAN13G2951' => 'fan', 'FAN14G0705' => 'fan', 'FAN14G0720' => 'fan', 'FAN17G0201' => 'fan', 'FAN17G2665' => 'fan', 'FAN18G1456' => 'fan', 'FAN18G1525' => 'fan', 'FAN18G3500' => 'fan', 'FAN28G2670' => 'fan', 'FvH4_1g12391' => 'fve', 'FvH4_4g23220' => 'fve', 'FvH4_5g08810' => 'fve', 'FvH4_5g28960' => 'fve', 'FvH4_6g42820' => 'fve', 'FvH4_6g51110' => 'fve', 'Glyma.02G051802' => 'gma', 'Glyma.04G185300' => 'gma', 'Glyma.05G202900' => 'gma', 'Glyma.08G010300' => 'gma', 'Glyma.16G131900' => 'gma', 'Glyma.17G087900' => 'gma', 'Gohir.A07G048600' => 'ghi', 'Gohir.A11G179000' => 'ghi', 'Gohir.A12G140900' => 'ghi', 'Gohir.A12G140950' => 'ghi', 'Gohir.A12G191700' => 'ghi', 'Gohir.A13G086300' => 'ghi', 'Gohir.D07G052900' => 'ghi', 'Gohir.D11G186600' => 'ghi', 'Gohir.D12G145575' => 'ghi', 'Gohir.D12G145650' => 'ghi', 'Gohir.D12G145725' => 'ghi', 'Gohir.D12G194050' => 'ghi', 'Gohir.D13G091800' => 'ghi', 'Gorai.001G055900' => 'gra', 'Gorai.007G198400' => 'gra', 'Gorai.008G157000' => 'gra', 'Gorai.008G157100' => 'gra', 'Gorai.008G208700' => 'gra', 'Gorai.010G138700' => 'gra', 'GSVIVG01000977001' => 'vvi', 'GSVIVG01007708001' => 'vvi', 'GSVIVG01008587001' => 'vvi', 'GSVIVG01018849001' => 'vvi', 'GSVIVG01032432001' => 'vvi', 'HanXRQChr02g0034131' => 'han', 'HanXRQChr02g0035981' => 'han', 'HanXRQChr02g0035991' => 'han', 'HanXRQChr05g0155611' => 'han', 'HanXRQChr05g0155621' => 'han', 'HanXRQChr08g0236501' => 'han', 'HanXRQChr09g0261321' => 'han', 'HanXRQChr09g0272081' => 'han', 'HanXRQChr10g0310741' => 'han', 'HanXRQChr11g0325591' => 'han', 'HanXRQChr12g0385691' => 'han', 'HanXRQChr13g0387801' => 'han', 'HanXRQChr15g0463011' => 'han', 'Haze_03826' => 'cav', 'Haze_03827' => 'cav', 'Haze_07183' => 'cav', 'Haze_07537' => 'cav', 'Haze_07539' => 'cav', 'Haze_12461' => 'cav', 'Haze_16115' => 'cav', 'Haze_16808' => 'cav', 'Haze_18531' => 'cav', 'Hma1.2p1_0046F.1_g026700' => 'hma', 'Hma1.2p1_0046F.1_g026710' => 'hma', 'Hma1.2p1_0168F.1_g074340' => 'hma', 'Hma1.2p1_0266F.1_g107030' => 'hma', 'Hma1.2p1_0266F.1_g107060' => 'hma', 'Hma1.2p1_0275F.1_g110510' => 'hma', 'Hma1.2p1_0592F.1_g185490' => 'hma', 'Hma1.2p1_0592F.1_g185500' => 'hma', 'Hma1.2p1_0592F.1_g185510' => 'hma', 'Hma1.2p1_0592F.1_g185520' => 'hma', 'Hma1.2p1_0592F.1_g185530' => 'hma', 'Hma1.2p1_0818F.1_g223450' => 'hma', 'HPP92_009708' => 'vpl', 'HPP92_009793' => 'vpl', 'HPP92_009796' => 'vpl', 'HPP92_009797' => 'vpl', 'HPP92_014940' => 'vpl', 'HPP92_014988' => 'vpl', 'Hund02463' => 'sun', 'Hund02760' => 'sun', 'Hund05071' => 'sun', 'Hund10108' => 'sun', 'Hund11204' => 'sun', 'Hund14016' => 'sun', 'Hund16464' => 'sun', 'Lalb_Chr09g0333391' => 'lal', 'Lalb_Chr11g0070461' => 'lal', 'Lalb_Chr12g0201671' => 'lal', 'Lalb_Chr13g0297161' => 'lal', 'Lj1g0002823' => 'lja', 'Lj3C1074T6' => 'lonja', 'Lj4A212T28' => 'lonja', 'Lj4g0005516' => 'lja', 'Lj4g0013705' => 'lja', 'Lj4g0027865' => 'lja', 'Lj5C92G16' => 'lonja', 'Lj5C92T12' => 'lonja', 'Lj7C596T3' => 'lonja', 'Lj9A446G59' => 'lonja', 'Lj9A482G21' => 'lonja', 'Lsat_1_v5_gn_1_28261' => 'lsa', 'Lsat_1_v5_gn_1_28281' => 'lsa', 'Lsat_1_v5_gn_1_32721' => 'lsa', 'Lsat_1_v5_gn_4_151760' => 'lsa', 'Lsat_1_v5_gn_4_2120' => 'lsa', 'Lsat_1_v5_gn_4_75761' => 'lsa', 'Lsat_1_v5_gn_5_10920' => 'lsa', 'Manes.02G099900' => 'mes', 'Manes.11G096200' => 'mes', 'Manes.12G007200' => 'mes', 'Manes.14G048300' => 'mes', 'Manes.17G114700' => 'mes', 'Mapoly0002s0070' => 'mpo', 'Mapoly0029s0099' => 'mpo', 'MBI07_g24742_MAGBIO' => 'mbi', 'MBI10_g27988_MAGBIO' => 'mbi', 'MBI11_g13057_MAGBIO' => 'mbi', 'MD02G1137200' => 'mdo', 'MD06G1137200' => 'mdo', 'MD07G1122300' => 'mdo', 'MD09G1078200' => 'mdo', 'MD13G1123700' => 'mdo', 'MD14G1151900' => 'mdo', 'MD17G1030900' => 'mdo', 'MD17G1068200' => 'mdo', 'MD17G1068600' => 'mdo', 'Medtr3g077540' => 'mtr', 'Medtr4g105530' => 'mtr', 'Medtr8g076580' => 'mtr', 'Medtr8g076590' => 'mtr', 'Medtr8g096410' => 'mtr', 'MELO3C016411.2' => 'cme', 'MELO3C017780.2' => 'cme', 'MELO3C022560.2' => 'cme', 'MELO3C026187.2' => 'cme', 'MELO3C026286.2' => 'cme', 'MELO3C032854.2' => 'cme', 'Migut.H02495' => 'egut', 'Migut.I00561' => 'egut', 'Migut.K01015' => 'egut', 'Migut.K01016' => 'egut', 'Migut.L00743' => 'egut', 'Migut.L00744' => 'egut', 'Migut.L00746' => 'egut', 'Migut.L00798' => 'egut', 'Migut.L00799' => 'egut', 'Migut.N02096' => 'egut', 'MSTRG.11259' => 'ama', 'MSTRG.23142' => 'ama', 'MSTRG.2499' => 'ama', 'Nitab4.5_0000003g0730' => 'nta', 'Nitab4.5_0000137g0020' => 'nta', 'Nitab4.5_0000721g0210' => 'nta', 'Nitab4.5_0000723g0050' => 'nta', 'Nitab4.5_0000913g0070' => 'nta', 'Nitab4.5_0001332g0040' => 'nta', 'Nitab4.5_0001771g0050' => 'nta', 'Nitab4.5_0001918g0050' => 'nta', 'Nitab4.5_0002686g0030' => 'nta', 'Nitab4.5_0003156g0020' => 'nta', 'Nitab4.5_0003383g0040' => 'nta', 'Nitab4.5_0003918g0010' => 'nta', 'Nitab4.5_0006760g0010' => 'nta', 'Nn1g05981' => 'nnu', 'Nn1g06288' => 'nnu', 'Nn3g16371' => 'nnu', 'Nn3g16786' => 'nnu', 'Nn4g22232' => 'nnu', 'Oeu005144.1' => 'oeu', 'Oeu005145.1' => 'oeu', 'Oeu011348.1' => 'oeu', 'Oeu016415.1' => 'oeu', 'Oeu023501.1' => 'oeu', 'Oeu044473.1' => 'oeu', 'Oeu048892.2' => 'oeu', 'Os01g0549200' => 'osa', 'Os02g0469300' => 'osa', 'Os04g0311100' => 'osa', 'Os06g0474900' => 'osa', 'Os10g0181700' => 'osa', 'Os11g0454800' => 'osa', 'Peaxi162Scf00037g00714' => 'pax', 'Peaxi162Scf00084g01217' => 'pax', 'Peaxi162Scf00257g00217' => 'pax', 'Peaxi162Scf00516g00215' => 'pax', 'Peaxi162Scf00689g00123' => 'pax', 'PGR044G2719' => 'pgr', 'PGR083G1360' => 'pgr', 'PGR102G2849' => 'pgr', 'PGR119G2534' => 'pgr', 'PGSC0003DMG400003538' => 'stu', 'PGSC0003DMG400028138' => 'stu', 'PGSC0003DMG400031732' => 'stu', 'PGSC0003DMG400038165' => 'stu', 'Phvul.002G284600' => 'pvu', 'Phvul.003G258200' => 'pvu', 'Phvul.009G176500' => 'pvu', 'Potri.003G167201' => 'ptr', 'Potri.005G118400' => 'ptr', 'Potri.012G089000' => 'ptr', 'Potri.012G102800' => 'ptr', 'Potri.015G079400' => 'ptr', 'Potri.015G100900' => 'ptr', 'Pp3c14_9810' => 'ppa', 'Pp3c15_10450' => 'ppa', 'Pp3c20_19150' => 'ppa', 'Pp3c23_12740' => 'ppa', 'Pp3c23_6310' => 'ppa', 'Pp3c24_3720' => 'ppa', 'Pp3c27_2580' => 'ppa', 'Pp3c9_8990' => 'ppa', 'PRCOL_00002854' => 'pco', 'Prupe.1G221200' => 'ppe', 'Prupe.3G289000' => 'ppe', 'Prupe.5G147000' => 'ppe', 'Prupe.6G157300' => 'ppe', 'Prupe.7G163400' => 'ppe', 'Psat0s2177g0040' => 'psa', 'Psat3g174760' => 'psa', 'Psat3g192160' => 'psa', 'Psat4g058520' => 'psa', 'Psat4g096840' => 'psa', 'Psat7g037320' => 'psa', 'PSO017G1274' => 'pso', 'PSO017G5166' => 'pso', 'PSO063G4558' => 'pso', 'PSO170G4458' => 'pso', 'PSO170G5005' => 'pso', 'PSO210G6156' => 'pso', 'PSO210G6635' => 'pso', 'PSO210G7397' => 'pso', 'PSO210G7700' => 'pso', 'PSO455G0035' => 'pso', 'PSO455G0180' => 'pso', 'PSO478G4515' => 'pso', 'PSO832G1305' => 'pso', 'PSO832G3489' => 'pso', 'QL02p075247' => 'qlo', 'QL03p051148' => 'qlo', 'QL05p010313' => 'qlo', 'QL06p034627' => 'qlo', 'QL10p001889' => 'qlo', 'QL10p010846' => 'qlo', 'RcHm_v2.0_Chr1g0350621' => 'rch', 'RcHm_v2.0_Chr1g0350641' => 'rch', 'RcHm_v2.0_Chr2g0092891' => 'rch', 'RcHm_v2.0_Chr2g0100251' => 'rch', 'RcHm_v2.0_Chr2g0158661' => 'rch', 'RcHm_v2.0_Chr2g0172741' => 'rch', 'RcHm_v2.0_Chr4g0429571' => 'rch', 'RcHm_v2.0_Chr5g0042471' => 'rch', 'RcHm_v2.0_Chr7g0189451' => 'rch', 'Rhsim08G0052000' => 'rsi', 'Rhsim08G0174400' => 'rsi', 'Rhsim08G0193200' => 'rsi', 'Rhsim10G0214800' => 'rsi', 'Rhsim10G0214900' => 'rsi', 'Rhsim10G0215000' => 'rsi', 'Rhsim12G0022900' => 'rsi', 'Rhsim12G0177500' => 'rsi', 'Rhsim12G0177700' => 'rsi', 'Sabra03G0122600' => 'sbr', 'Sabra05G0097400' => 'sbr', 'Sabra12G0064100' => 'sbr', 'Sabra15G0121300' => 'sbr', 'SalBow2G0642' => 'sbo', 'SalBow5G2667' => 'sbo', 'SalBow5G4873' => 'sbo', 'SalBow8G2395' => 'sbo', 'Sc03g0003290' => 'sci', 'Sc10g0010130' => 'sci', 'Sc22g0003650' => 'sci', 'Sed0001603' => 'sed', 'Sed0004259' => 'sed', 'Sed0006789' => 'sed', 'Sed0011838' => 'sed', 'Sed0012964' => 'sed', 'Sed0016383' => 'sed', 'Sed0019010' => 'sed', 'Sed0020188' => 'sed', 'SEGI_04702' => 'sgi', 'SEGI_17231' => 'sgi', 'SEGI_18877' => 'sgi', 'SEGI_25196' => 'sgi', 'SEGI_25515' => 'sgi', 'SEGI_28445' => 'sgi', 'SEGI_37452' => 'sgi', 'SGA_v2.0_scaffold188G40336' => 'sas', 'SGA_v2.0_scaffold228G43247' => 'sas', 'SGA_v2.0_scaffold280G46853' => 'sas', 'SGA_v2.0_scaffold34G13808' => 'sas', 'SGA_v2.0_scaffold40G15576' => 'sas', 'SGA_v2.0_scaffold611G53188' => 'sas', 'SGA_v2.0_scaffold78G25461' => 'sas', 'SGA_v2.0_scaffold90G27888' => 'sas', 'SHI08601' => 'shi', 'SHI08606' => 'shi', 'SHI17117' => 'shi', 'SHI17119' => 'shi', 'SMO118G0201' => 'smo', 'SMO169G0247' => 'smo', 'SMO176G0006' => 'smo', 'SMO176G0015' => 'smo', 'SMO202G0006' => 'smo', 'SMO240G0050' => 'smo', 'SMO286G0009' => 'smo', 'SMO338G0033' => 'smo', 'SMO356G0533' => 'smo', 'SMO364G0382' => 'smo', 'SMO367G0166' => 'smo', 'SMO367G1098' => 'smo', 'Solyc01g009920.3' => 'sly', 'Solyc01g099300.3' => 'sly', 'Solyc02g084700.3' => 'sly', 'Solyc03g097520.3' => 'sly', 'Solyc06g071580.3' => 'sly', 'Solyc10g081760.3' => 'sly', 'Sopen01g005480' => 'spe', 'Sopen01g042850' => 'spe', 'Sopen02g029370' => 'spe', 'Sopen03g028280' => 'spe', 'Sopen06g027870' => 'spe', 'Sopen10g032270' => 'spe', 'Sp5g18180' => 'spa', 'Sp6g12880' => 'spa', 'Sp6g30850' => 'spa', 'Sp7g22960' => 'spa', 'Sp7g34010' => 'spa', 'SpUn1326_0010' => 'spa', 'TAR371G0242' => 'tar', 'TAR622G0638' => 'tar', 'TAR628G1548' => 'tar', 'TAR629G1079' => 'tar', 'TAR629G3413' => 'tar', 'THA.LOC104804249' => 'tha', 'THA.LOC104808315' => 'tha', 'THA.LOC104809238' => 'tha', 'THA.LOC104825484' => 'tha', 'Thecc.01G025500' => 'tca', 'Thecc.03G015800' => 'tca', 'Thecc.03G018000' => 'tca', 'Thecc.03G134800' => 'tca', 'Thecc.04G014700' => 'tca', 'Thhalv10006991m.g' => 'esa', 'Thhalv10012707m.g' => 'esa', 'Thhalv10015739m.g' => 'esa', 'Thhalv10024553m.g' => 'esa', 'Thhalv10024673m.g' => 'esa', 'Thhalv10029187m.g' => 'esa', 'TPR.G12971' => 'tpr', 'TPR.G29396' => 'tpr', 'TPR.G33376' => 'tpr', 'TPR.G35508' => 'tpr', 'TPR.G35516' => 'tpr', 'TPR.G37317' => 'tpr', 'TPR.G37389' => 'tpr', 'TPR.G37523' => 'tpr', 'TPR.G559' => 'tpr', 'TWI14G0070' => 'twi', 'TWI14G0729' => 'twi', 'TWI18G0596' => 'twi', 'TWI39G0780' => 'twi', 'TWI39G0850' => 'twi', 'TWI73G1052' => 'twi', 'unitig_52.g17485' => 'ugi', 'unitig_61.g26355' => 'ugi', 'vmacro01040' => 'vma', 'vmacro16731' => 'vma', 'vmacro18270' => 'vma', 'vmacro19142' => 'vma', 'vmacro19407' => 'vma', 'vmacro19408' => 'vma', 'vmacro21899' => 'vma', 'vmacro21900' => 'vma', 'vmacro21901' => 'vma', 'VMungo0251G0490' => 'vmu', 'VMungo0251G1748' => 'vmu', 'VMungo1309G0421' => 'vmu', 'Zm00001eb086500' => 'zma', 'Zm00001eb150680' => 'zma', 'Zm00001eb162330' => 'zma', 'Zm00001eb203130' => 'zma', 'Zm00001eb369480' => 'zma', 'Zm00001eb382340' => 'zma', 'Zm00001eb416360' => 'zma' ), 'gf_id' => 'HOM05D000902', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000902' ), 'data_identifier' => 'HOM05D000902', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000902', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '663', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02470' => 'bna', 'A01p16260' => 'bna', 'A02p01680' => 'bna', 'A03p16600' => 'bna', 'A03p55660' => 'bna', 'A03p64160' => 'bna', 'A03p64170' => 'bna', 'A08p31900' => 'bna', 'A09p59530' => 'bna', 'A10p08230' => 'bna', 'A10p25090' => 'bna', 'Aa31LG3G7100' => 'aar', 'Aa31LG3G7110' => 'aar', 'Aa31LG6G13160' => 'aar', 'Aa31LG7G10770' => 'aar', 'Aa31LG7G3830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2723' => 'aag', 'Actinidia08045' => 'ach', 'Actinidia08888' => 'ach', 'Actinidia18333' => 'ach', 'Actinidia19334' => 'ach', 'Actinidia25552' => 'ach', 'Actinidia26089' => 'ach', 'Actinidia30615' => 'ach', 'Actinidia30616' => 'ach', 'Actinidia33083' => 'ach', 'Actinidia35762' => 'ach', 'Ah.02g110620' => 'amhyb', 'Ah.11g046390' => 'amhyb', 'AL1G31670' => 'aly', 'AL6G23730' => 'aly', 'AL7G14740' => 'aly', 'AL7G14750' => 'aly', 'AL7G14760' => 'aly', 'AL7G28220' => 'aly', 'AL8G24940' => 'aly', 'Aqoxy3G01665' => 'aox', 'Aqoxy3G02853' => 'aox', 'Aqoxy5G01513' => 'aox', 'Aqoxy5G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8SKA4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ75LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKDA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0LJZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7REX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZP4YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWX7I5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2QKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS0L9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPCD8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q161UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC7XCF' => 'arhy', 'AT1G19100' => 'ath', 'AT4G24970' => 'ath', 'AT4G36270' => 'ath', 'AT4G36280' => 'ath', 'AT4G36290' => 'ath', 'AT5G13130' => 'ath', 'AT5G50780' => 'ath', 'ATR0582G266' => 'atr', 'ATR0661G195' => 'atr', 'ATR1152G031' => 'atr', 'Atru.chr11.2382' => 'acertr', 'Atru.chr12.2337' => 'acertr', 'Atru.chr3.744' => 'acertr', 'Atru.chr6.1870' => 'acertr', 'Atru.chr9.2515' => 'acertr', 'AUR62004120' => 'cqu', 'AUR62005667' => 'cqu', 'AUR62007634' => 'cqu', 'AUR62008186' => 'cqu', 'AUR62008187' => 'cqu', 'AUR62008188' => 'cqu', 'AUR62027954' => 'cqu', 'AUR62028766' => 'cqu', 'AUR62028767' => 'cqu', 'AUR62028768' => 'cqu', 'AUR62028886' => 'cqu', 'AUR62029563' => 'cqu', 'AUR62038832' => 'cqu', 'BcaB01g04149' => 'bca', 'BcaB03g12940' => 'bca', 'BcaB03g13090' => 'bca', 'BcaB03g14466' => 'bca', 'BcaB05g24035' => 'bca', 'BcaC01g06050' => 'bca', 'BcaC04g19148' => 'bca', 'BcaC04g20761' => 'bca', 'BcaC06g32845' => 'bca', 'BcaC07g41274' => 'bca', 'BcaC09g50827' => 'bca', 'BcaNung00741' => 'bca', 'BcaNung00742' => 'bca', 'BcaNung01859' => 'bca', 'BcaNung03985' => 'bca', 'BcaNung03989' => 'bca', 'BcaNung05661' => 'bca', 'BolC1t00257H' => 'bol', 'BolC1t01956H' => 'bol', 'BolC2t06534H' => 'bol', 'BolC3t14334H' => 'bol', 'BolC5t30451H' => 'bol', 'BolC7t45880H' => 'bol', 'BolC7t46586H' => 'bol', 'BolC8t49301H' => 'bol', 'BolC8t51837H' => 'bol', 'BolC9t56822H' => 'bol', 'BolC9t59235H' => 'bol', 'BraA01t00234Z' => 'bra', 'BraA01t01563Z' => 'bra', 'BraA02t05147Z' => 'bra', 'BraA03t10947Z' => 'bra', 'BraA03t14633Z' => 'bra', 'BraA08t35112Z' => 'bra', 'BraA09t41330Z' => 'bra', 'BraA10t44570Z' => 'bra', 'C01p02670' => 'bna', 'C01p20260' => 'bna', 'C02p05890' => 'bna', 'C03p19530' => 'bna', 'C05p17470' => 'bna', 'C07p53900' => 'bna', 'C07p61630' => 'bna', 'C08p16800' => 'bna', 'C08p42810' => 'bna', 'C09p39480' => 'bna', 'C09p63980' => 'bna', 'CAN.G1001.7' => 'can', 'CAN.G1034.55' => 'can', 'CAN.G143.7' => 'can', 'CAN.G3340.1' => 'can', 'CAN.G358.19' => 'can', 'CAN.G373.2' => 'can', 'CAN.G674.16' => 'can', 'CAN.G674.17' => 'can', 'CAN.G674.18' => 'can', 'CAN.G732.2' => 'can', 'CAN.G732.3' => 'can', 'CAN.G993.39' => 'can', 'CANSAT01G2052' => 'cansat', 'CANSAT80G0070' => 'cansat', 'CANSAT80G0483' => 'cansat', 'CANSAT80G0625' => 'cansat', 'CARHR019690' => 'chi', 'CARHR080280' => 'chi', 'CARHR152750' => 'chi', 'CARHR152760' => 'chi', 'CARHR152770' => 'chi', 'CARHR200340' => 'chi', 'CARHR232370' => 'chi', 'CARHR244670' => 'chi', 'CARHR244680' => 'chi', 'CARHR257520' => 'chi', 'Carub.0001s1872' => 'cru', 'Carub.0006s1130' => 'cru', 'Carub.0007s0396' => 'cru', 'Carub.0007s0397' => 'cru', 'Carub.0007s1608' => 'cru', 'Carub.0008s1068' => 'cru', 'Carub.0008s1077' => 'cru', 'Ca_16158_v3' => 'car', 'Ca_17571_v3' => 'car', 'Ca_21936_v3' => 'car', 'Ca_22350_v3' => 'car', 'CBR_g22445' => 'cbr', 'CBR_g26290' => 'cbr', 'Cc04_g09610' => 'ccan', 'Cc04_g12280' => 'ccan', 'Cc07_g10230' => 'ccan', 'CDE02G0093' => 'cde', 'CDE02G0701' => 'cde', 'CDE04G1050' => 'cde', 'CDE05G1833' => 'cde', 'CDE05G3058' => 'cde', 'CDE05G3380' => 'cde', 'CDE06G0536' => 'cde', 'Cfa006923' => 'cfa', 'Cfa009402' => 'cfa', 'Cfa018751' => 'cfa', 'Cfa019164' => 'cfa', 'Cfa022935' => 'cfa', 'Ciclev10019081m.g' => 'ccl', 'Ciclev10025076m.g' => 'ccl', 'Ciclev10030712m.g' => 'ccl', 'Ciclev10033760m.g' => 'ccl', 'CiPaw.05G105600' => 'cil', 'CiPaw.08G136700' => 'cil', 'CiPaw.11G003900' => 'cil', 'CiPaw.11G023700' => 'cil', 'CiPaw.12G003700' => 'cil', 'ClCG06G017100' => 'cla', 'ClCG06G018110' => 'cla', 'ClCG07G008800' => 'cla', 'ClCG07G015330' => 'cla', 'COL.COLO4_13698' => 'col', 'COL.COLO4_16659' => 'col', 'COL.COLO4_21986' => 'col', 'COL.COLO4_24049' => 'col', 'COL.COLO4_29061' => 'col', 'COL.COLO4_29075' => 'col', 'COL.COLO4_30094' => 'col', 'Cpa.g.c33689' => 'cpa', 'Cpa.g.sc108.39' => 'cpa', 'Cpa.g.sc108.41' => 'cpa', 'Cpa.g.sc1163.1' => 'cpa', 'Cpa.g.sc4.155' => 'cpa', 'Cpa.g.sc6.194' => 'cpa', 'CsaV3_1G000340' => 'csa', 'CsaV3_1G001400' => 'csa', 'CsaV3_4G002220' => 'csa', 'CsaV3_4G005370' => 'csa', 'CSS0007487' => 'camsi', 'CSS0008066' => 'camsi', 'CSS0009120' => 'camsi', 'CSS0015512' => 'camsi', 'CSS0022409' => 'camsi', 'CSS0025358' => 'camsi', 'CSS0044547' => 'camsi', 'DCAR_013057' => 'dca', 'DCAR_015058' => 'dca', 'DCAR_016027' => 'dca', 'DCAR_017327' => 'dca', 'DCAR_020743' => 'dca', 'DCAR_026157' => 'dca', 'DCAR_032339' => 'dca', 'DCAR_032340' => 'dca', 'Dinv11200' => 'din', 'Dinv11201' => 'din', 'Dinv20631' => 'din', 'Dinv23182' => 'din', 'Dinv33466' => 'din', 'Dinv33583' => 'din', 'Dinv38565' => 'din', 'Duzib068G0200' => 'dzi', 'Duzib147G0132' => 'dzi', 'Duzib147G0635' => 'dzi', 'Duzib205G1670' => 'dzi', 'Duzib251G0606' => 'dzi', 'ECA232G3336' => 'eca', 'ECA232G3763' => 'eca', 'ECA232G4845' => 'eca', 'ECA234G1607' => 'eca', 'ECA246G0932' => 'eca', 'ECA247G0781' => 'eca', 'ECA247G1932' => 'eca', 'ECA247G2079' => 'eca', 'ECA247G3338' => 'eca', 'ECA247G4115' => 'eca', 'EL10Ac3g06552' => 'bvu', 'EL10Ac5g10721' => 'bvu', 'EL10Ac5g10722' => 'bvu', 'EL10Ac5g10723' => 'bvu', 'EL10Ac5g11361' => 'bvu', 'EL10Ac6g13553' => 'bvu', 'EL10As8g23872' => 'bvu', 'Eucgr.B00250' => 'egr', 'Eucgr.B00251' => 'egr', 'Eucgr.B03533' => 'egr', 'Eucgr.I02381' => 'egr', 'Eucgr.K02700' => 'egr', 'FAN02G0174' => 'fan', 'FAN02G3146' => 'fan', 'FAN04G1672' => 'fan', 'FAN04G2273' => 'fan', 'FAN05G2791' => 'fan', 'FAN05G4035' => 'fan', 'FAN07G0834' => 'fan', 'FAN08G1198' => 'fan', 'FAN09G4182' => 'fan', 'FAN12G0496' => 'fan', 'FAN13G1027' => 'fan', 'FAN13G2951' => 'fan', 'FAN14G0705' => 'fan', 'FAN14G0720' => 'fan', 'FAN17G0201' => 'fan', 'FAN17G2665' => 'fan', 'FAN18G1456' => 'fan', 'FAN18G1525' => 'fan', 'FAN18G3500' => 'fan', 'FAN28G2670' => 'fan', 'FvH4_1g12391' => 'fve', 'FvH4_4g23220' => 'fve', 'FvH4_5g08810' => 'fve', 'FvH4_5g28960' => 'fve', 'FvH4_6g42820' => 'fve', 'FvH4_6g51110' => 'fve', 'Glyma.02G051802' => 'gma', 'Glyma.04G185300' => 'gma', 'Glyma.05G202900' => 'gma', 'Glyma.08G010300' => 'gma', 'Glyma.16G131900' => 'gma', 'Glyma.17G087900' => 'gma', 'Gohir.A07G048600' => 'ghi', 'Gohir.A11G179000' => 'ghi', 'Gohir.A12G140900' => 'ghi', 'Gohir.A12G140950' => 'ghi', 'Gohir.A12G191700' => 'ghi', 'Gohir.A13G086300' => 'ghi', 'Gohir.D07G052900' => 'ghi', 'Gohir.D11G186600' => 'ghi', 'Gohir.D12G145575' => 'ghi', 'Gohir.D12G145650' => 'ghi', 'Gohir.D12G145725' => 'ghi', 'Gohir.D12G194050' => 'ghi', 'Gohir.D13G091800' => 'ghi', 'Gorai.001G055900' => 'gra', 'Gorai.007G198400' => 'gra', 'Gorai.008G157000' => 'gra', 'Gorai.008G157100' => 'gra', 'Gorai.008G208700' => 'gra', 'Gorai.010G138700' => 'gra', 'GSVIVG01000977001' => 'vvi', 'GSVIVG01007708001' => 'vvi', 'GSVIVG01008587001' => 'vvi', 'GSVIVG01018849001' => 'vvi', 'GSVIVG01032432001' => 'vvi', 'HanXRQChr02g0034131' => 'han', 'HanXRQChr02g0035981' => 'han', 'HanXRQChr02g0035991' => 'han', 'HanXRQChr05g0155611' => 'han', 'HanXRQChr05g0155621' => 'han', 'HanXRQChr08g0236501' => 'han', 'HanXRQChr09g0261321' => 'han', 'HanXRQChr09g0272081' => 'han', 'HanXRQChr10g0310741' => 'han', 'HanXRQChr11g0325591' => 'han', 'HanXRQChr12g0385691' => 'han', 'HanXRQChr13g0387801' => 'han', 'HanXRQChr15g0463011' => 'han', 'Haze_03826' => 'cav', 'Haze_03827' => 'cav', 'Haze_07183' => 'cav', 'Haze_07537' => 'cav', 'Haze_07539' => 'cav', 'Haze_12461' => 'cav', 'Haze_16115' => 'cav', 'Haze_16808' => 'cav', 'Haze_18531' => 'cav', 'Hma1.2p1_0046F.1_g026700' => 'hma', 'Hma1.2p1_0046F.1_g026710' => 'hma', 'Hma1.2p1_0168F.1_g074340' => 'hma', 'Hma1.2p1_0266F.1_g107030' => 'hma', 'Hma1.2p1_0266F.1_g107060' => 'hma', 'Hma1.2p1_0275F.1_g110510' => 'hma', 'Hma1.2p1_0592F.1_g185490' => 'hma', 'Hma1.2p1_0592F.1_g185500' => 'hma', 'Hma1.2p1_0592F.1_g185510' => 'hma', 'Hma1.2p1_0592F.1_g185520' => 'hma', 'Hma1.2p1_0592F.1_g185530' => 'hma', 'Hma1.2p1_0818F.1_g223450' => 'hma', 'HPP92_009708' => 'vpl', 'HPP92_009793' => 'vpl', 'HPP92_009796' => 'vpl', 'HPP92_009797' => 'vpl', 'HPP92_014940' => 'vpl', 'HPP92_014988' => 'vpl', 'Hund02463' => 'sun', 'Hund02760' => 'sun', 'Hund05071' => 'sun', 'Hund10108' => 'sun', 'Hund11204' => 'sun', 'Hund14016' => 'sun', 'Hund16464' => 'sun', 'Lalb_Chr09g0333391' => 'lal', 'Lalb_Chr11g0070461' => 'lal', 'Lalb_Chr12g0201671' => 'lal', 'Lalb_Chr13g0297161' => 'lal', 'Lj1g0002823' => 'lja', 'Lj3C1074T6' => 'lonja', 'Lj4A212T28' => 'lonja', 'Lj4g0005516' => 'lja', 'Lj4g0013705' => 'lja', 'Lj4g0027865' => 'lja', 'Lj5C92G16' => 'lonja', 'Lj5C92T12' => 'lonja', 'Lj7C596T3' => 'lonja', 'Lj9A446G59' => 'lonja', 'Lj9A482G21' => 'lonja', 'Lsat_1_v5_gn_1_28261' => 'lsa', 'Lsat_1_v5_gn_1_28281' => 'lsa', 'Lsat_1_v5_gn_1_32721' => 'lsa', 'Lsat_1_v5_gn_4_151760' => 'lsa', 'Lsat_1_v5_gn_4_2120' => 'lsa', 'Lsat_1_v5_gn_4_75761' => 'lsa', 'Lsat_1_v5_gn_5_10920' => 'lsa', 'Manes.02G099900' => 'mes', 'Manes.11G096200' => 'mes', 'Manes.12G007200' => 'mes', 'Manes.14G048300' => 'mes', 'Manes.17G114700' => 'mes', 'Mapoly0002s0070' => 'mpo', 'Mapoly0029s0099' => 'mpo', 'MBI07_g24742_MAGBIO' => 'mbi', 'MBI10_g27988_MAGBIO' => 'mbi', 'MBI11_g13057_MAGBIO' => 'mbi', 'MD02G1137200' => 'mdo', 'MD06G1137200' => 'mdo', 'MD07G1122300' => 'mdo', 'MD09G1078200' => 'mdo', 'MD13G1123700' => 'mdo', 'MD14G1151900' => 'mdo', 'MD17G1030900' => 'mdo', 'MD17G1068200' => 'mdo', 'MD17G1068600' => 'mdo', 'Medtr3g077540' => 'mtr', 'Medtr4g105530' => 'mtr', 'Medtr8g076580' => 'mtr', 'Medtr8g076590' => 'mtr', 'Medtr8g096410' => 'mtr', 'MELO3C016411.2' => 'cme', 'MELO3C017780.2' => 'cme', 'MELO3C022560.2' => 'cme', 'MELO3C026187.2' => 'cme', 'MELO3C026286.2' => 'cme', 'MELO3C032854.2' => 'cme', 'Migut.H02495' => 'egut', 'Migut.I00561' => 'egut', 'Migut.K01015' => 'egut', 'Migut.K01016' => 'egut', 'Migut.L00743' => 'egut', 'Migut.L00744' => 'egut', 'Migut.L00746' => 'egut', 'Migut.L00798' => 'egut', 'Migut.L00799' => 'egut', 'Migut.N02096' => 'egut', 'MSTRG.11259' => 'ama', 'MSTRG.23142' => 'ama', 'MSTRG.2499' => 'ama', 'Nitab4.5_0000003g0730' => 'nta', 'Nitab4.5_0000137g0020' => 'nta', 'Nitab4.5_0000721g0210' => 'nta', 'Nitab4.5_0000723g0050' => 'nta', 'Nitab4.5_0000913g0070' => 'nta', 'Nitab4.5_0001332g0040' => 'nta', 'Nitab4.5_0001771g0050' => 'nta', 'Nitab4.5_0001918g0050' => 'nta', 'Nitab4.5_0002686g0030' => 'nta', 'Nitab4.5_0003156g0020' => 'nta', 'Nitab4.5_0003383g0040' => 'nta', 'Nitab4.5_0003918g0010' => 'nta', 'Nitab4.5_0006760g0010' => 'nta', 'Nn1g05981' => 'nnu', 'Nn1g06288' => 'nnu', 'Nn3g16371' => 'nnu', 'Nn3g16786' => 'nnu', 'Nn4g22232' => 'nnu', 'Oeu005144.1' => 'oeu', 'Oeu005145.1' => 'oeu', 'Oeu011348.1' => 'oeu', 'Oeu016415.1' => 'oeu', 'Oeu023501.1' => 'oeu', 'Oeu044473.1' => 'oeu', 'Oeu048892.2' => 'oeu', 'Os01g0549200' => 'osa', 'Os02g0469300' => 'osa', 'Os04g0311100' => 'osa', 'Os06g0474900' => 'osa', 'Os10g0181700' => 'osa', 'Os11g0454800' => 'osa', 'Peaxi162Scf00037g00714' => 'pax', 'Peaxi162Scf00084g01217' => 'pax', 'Peaxi162Scf00257g00217' => 'pax', 'Peaxi162Scf00516g00215' => 'pax', 'Peaxi162Scf00689g00123' => 'pax', 'PGR044G2719' => 'pgr', 'PGR083G1360' => 'pgr', 'PGR102G2849' => 'pgr', 'PGR119G2534' => 'pgr', 'PGSC0003DMG400003538' => 'stu', 'PGSC0003DMG400028138' => 'stu', 'PGSC0003DMG400031732' => 'stu', 'PGSC0003DMG400038165' => 'stu', 'Phvul.002G284600' => 'pvu', 'Phvul.003G258200' => 'pvu', 'Phvul.009G176500' => 'pvu', 'Potri.003G167201' => 'ptr', 'Potri.005G118400' => 'ptr', 'Potri.012G089000' => 'ptr', 'Potri.012G102800' => 'ptr', 'Potri.015G079400' => 'ptr', 'Potri.015G100900' => 'ptr', 'Pp3c14_9810' => 'ppa', 'Pp3c15_10450' => 'ppa', 'Pp3c20_19150' => 'ppa', 'Pp3c23_12740' => 'ppa', 'Pp3c23_6310' => 'ppa', 'Pp3c24_3720' => 'ppa', 'Pp3c27_2580' => 'ppa', 'Pp3c9_8990' => 'ppa', 'PRCOL_00002854' => 'pco', 'Prupe.1G221200' => 'ppe', 'Prupe.3G289000' => 'ppe', 'Prupe.5G147000' => 'ppe', 'Prupe.6G157300' => 'ppe', 'Prupe.7G163400' => 'ppe', 'Psat0s2177g0040' => 'psa', 'Psat3g174760' => 'psa', 'Psat3g192160' => 'psa', 'Psat4g058520' => 'psa', 'Psat4g096840' => 'psa', 'Psat7g037320' => 'psa', 'PSO017G1274' => 'pso', 'PSO017G5166' => 'pso', 'PSO063G4558' => 'pso', 'PSO170G4458' => 'pso', 'PSO170G5005' => 'pso', 'PSO210G6156' => 'pso', 'PSO210G6635' => 'pso', 'PSO210G7397' => 'pso', 'PSO210G7700' => 'pso', 'PSO455G0035' => 'pso', 'PSO455G0180' => 'pso', 'PSO478G4515' => 'pso', 'PSO832G1305' => 'pso', 'PSO832G3489' => 'pso', 'QL02p075247' => 'qlo', 'QL03p051148' => 'qlo', 'QL05p010313' => 'qlo', 'QL06p034627' => 'qlo', 'QL10p001889' => 'qlo', 'QL10p010846' => 'qlo', 'RcHm_v2.0_Chr1g0350621' => 'rch', 'RcHm_v2.0_Chr1g0350641' => 'rch', 'RcHm_v2.0_Chr2g0092891' => 'rch', 'RcHm_v2.0_Chr2g0100251' => 'rch', 'RcHm_v2.0_Chr2g0158661' => 'rch', 'RcHm_v2.0_Chr2g0172741' => 'rch', 'RcHm_v2.0_Chr4g0429571' => 'rch', 'RcHm_v2.0_Chr5g0042471' => 'rch', 'RcHm_v2.0_Chr7g0189451' => 'rch', 'Rhsim08G0052000' => 'rsi', 'Rhsim08G0174400' => 'rsi', 'Rhsim08G0193200' => 'rsi', 'Rhsim10G0214800' => 'rsi', 'Rhsim10G0214900' => 'rsi', 'Rhsim10G0215000' => 'rsi', 'Rhsim12G0022900' => 'rsi', 'Rhsim12G0177500' => 'rsi', 'Rhsim12G0177700' => 'rsi', 'Sabra03G0122600' => 'sbr', 'Sabra05G0097400' => 'sbr', 'Sabra12G0064100' => 'sbr', 'Sabra15G0121300' => 'sbr', 'SalBow2G0642' => 'sbo', 'SalBow5G2667' => 'sbo', 'SalBow5G4873' => 'sbo', 'SalBow8G2395' => 'sbo', 'Sc03g0003290' => 'sci', 'Sc10g0010130' => 'sci', 'Sc22g0003650' => 'sci', 'Sed0001603' => 'sed', 'Sed0004259' => 'sed', 'Sed0006789' => 'sed', 'Sed0011838' => 'sed', 'Sed0012964' => 'sed', 'Sed0016383' => 'sed', 'Sed0019010' => 'sed', 'Sed0020188' => 'sed', 'SEGI_04702' => 'sgi', 'SEGI_17231' => 'sgi', 'SEGI_18877' => 'sgi', 'SEGI_25196' => 'sgi', 'SEGI_25515' => 'sgi', 'SEGI_28445' => 'sgi', 'SEGI_37452' => 'sgi', 'SGA_v2.0_scaffold188G40336' => 'sas', 'SGA_v2.0_scaffold228G43247' => 'sas', 'SGA_v2.0_scaffold280G46853' => 'sas', 'SGA_v2.0_scaffold34G13808' => 'sas', 'SGA_v2.0_scaffold40G15576' => 'sas', 'SGA_v2.0_scaffold611G53188' => 'sas', 'SGA_v2.0_scaffold78G25461' => 'sas', 'SGA_v2.0_scaffold90G27888' => 'sas', 'SHI08601' => 'shi', 'SHI08606' => 'shi', 'SHI17117' => 'shi', 'SHI17119' => 'shi', 'SMO118G0201' => 'smo', 'SMO169G0247' => 'smo', 'SMO176G0006' => 'smo', 'SMO176G0015' => 'smo', 'SMO202G0006' => 'smo', 'SMO240G0050' => 'smo', 'SMO286G0009' => 'smo', 'SMO338G0033' => 'smo', 'SMO356G0533' => 'smo', 'SMO364G0382' => 'smo', 'SMO367G0166' => 'smo', 'SMO367G1098' => 'smo', 'Solyc01g009920.3' => 'sly', 'Solyc01g099300.3' => 'sly', 'Solyc02g084700.3' => 'sly', 'Solyc03g097520.3' => 'sly', 'Solyc06g071580.3' => 'sly', 'Solyc10g081760.3' => 'sly', 'Sopen01g005480' => 'spe', 'Sopen01g042850' => 'spe', 'Sopen02g029370' => 'spe', 'Sopen03g028280' => 'spe', 'Sopen06g027870' => 'spe', 'Sopen10g032270' => 'spe', 'Sp5g18180' => 'spa', 'Sp6g12880' => 'spa', 'Sp6g30850' => 'spa', 'Sp7g22960' => 'spa', 'Sp7g34010' => 'spa', 'SpUn1326_0010' => 'spa', 'TAR371G0242' => 'tar', 'TAR622G0638' => 'tar', 'TAR628G1548' => 'tar', 'TAR629G1079' => 'tar', 'TAR629G3413' => 'tar', 'THA.LOC104804249' => 'tha', 'THA.LOC104808315' => 'tha', 'THA.LOC104809238' => 'tha', 'THA.LOC104825484' => 'tha', 'Thecc.01G025500' => 'tca', 'Thecc.03G015800' => 'tca', 'Thecc.03G018000' => 'tca', 'Thecc.03G134800' => 'tca', 'Thecc.04G014700' => 'tca', 'Thhalv10006991m.g' => 'esa', 'Thhalv10012707m.g' => 'esa', 'Thhalv10015739m.g' => 'esa', 'Thhalv10024553m.g' => 'esa', 'Thhalv10024673m.g' => 'esa', 'Thhalv10029187m.g' => 'esa', 'TPR.G12971' => 'tpr', 'TPR.G29396' => 'tpr', 'TPR.G33376' => 'tpr', 'TPR.G35508' => 'tpr', 'TPR.G35516' => 'tpr', 'TPR.G37317' => 'tpr', 'TPR.G37389' => 'tpr', 'TPR.G37523' => 'tpr', 'TPR.G559' => 'tpr', 'TWI14G0070' => 'twi', 'TWI14G0729' => 'twi', 'TWI18G0596' => 'twi', 'TWI39G0780' => 'twi', 'TWI39G0850' => 'twi', 'TWI73G1052' => 'twi', 'unitig_52.g17485' => 'ugi', 'unitig_61.g26355' => 'ugi', 'vmacro01040' => 'vma', 'vmacro16731' => 'vma', 'vmacro18270' => 'vma', 'vmacro19142' => 'vma', 'vmacro19407' => 'vma', 'vmacro19408' => 'vma', 'vmacro21899' => 'vma', 'vmacro21900' => 'vma', 'vmacro21901' => 'vma', 'VMungo0251G0490' => 'vmu', 'VMungo0251G1748' => 'vmu', 'VMungo1309G0421' => 'vmu', 'Zm00001eb086500' => 'zma', 'Zm00001eb150680' => 'zma', 'Zm00001eb162330' => 'zma', 'Zm00001eb203130' => 'zma', 'Zm00001eb369480' => 'zma', 'Zm00001eb382340' => 'zma', 'Zm00001eb416360' => 'zma' ) $gf_id = 'HOM05D000902' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000902' ) $data_identifier = 'HOM05D000902' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 13, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 10, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 6, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 9, 'hma' => (int) 12, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 4, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 6, 'ppa' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 6, 'rch' => (int) 9, 'rsi' => (int) 9, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 12, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 3, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416360' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000902', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '663', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02470' => 'bna', 'A01p16260' => 'bna', 'A02p01680' => 'bna', 'A03p16600' => 'bna', 'A03p55660' => 'bna', 'A03p64160' => 'bna', 'A03p64170' => 'bna', 'A08p31900' => 'bna', 'A09p59530' => 'bna', 'A10p08230' => 'bna', 'A10p25090' => 'bna', 'Aa31LG3G7100' => 'aar', 'Aa31LG3G7110' => 'aar', 'Aa31LG6G13160' => 'aar', 'Aa31LG7G10770' => 'aar', 'Aa31LG7G3830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2723' => 'aag', 'Actinidia08045' => 'ach', 'Actinidia08888' => 'ach', 'Actinidia18333' => 'ach', 'Actinidia19334' => 'ach', 'Actinidia25552' => 'ach', 'Actinidia26089' => 'ach', 'Actinidia30615' => 'ach', 'Actinidia30616' => 'ach', 'Actinidia33083' => 'ach', 'Actinidia35762' => 'ach', 'Ah.02g110620' => 'amhyb', 'Ah.11g046390' => 'amhyb', 'AL1G31670' => 'aly', 'AL6G23730' => 'aly', 'AL7G14740' => 'aly', 'AL7G14750' => 'aly', 'AL7G14760' => 'aly', 'AL7G28220' => 'aly', 'AL8G24940' => 'aly', 'Aqoxy3G01665' => 'aox', 'Aqoxy3G02853' => 'aox', 'Aqoxy5G01513' => 'aox', 'Aqoxy5G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8SKA4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ75LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKDA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0LJZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7REX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZP4YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWX7I5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2QKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS0L9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPCD8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q161UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC7XCF' => 'arhy', 'AT1G19100' => 'ath', 'AT4G24970' => 'ath', 'AT4G36270' => 'ath', 'AT4G36280' => 'ath', 'AT4G36290' => 'ath', 'AT5G13130' => 'ath', 'AT5G50780' => 'ath', 'ATR0582G266' => 'atr', 'ATR0661G195' => 'atr', 'ATR1152G031' => 'atr', 'Atru.chr11.2382' => 'acertr', 'Atru.chr12.2337' => 'acertr', 'Atru.chr3.744' => 'acertr', 'Atru.chr6.1870' => 'acertr', 'Atru.chr9.2515' => 'acertr', 'AUR62004120' => 'cqu', 'AUR62005667' => 'cqu', 'AUR62007634' => 'cqu', 'AUR62008186' => 'cqu', 'AUR62008187' => 'cqu', 'AUR62008188' => 'cqu', 'AUR62027954' => 'cqu', 'AUR62028766' => 'cqu', 'AUR62028767' => 'cqu', 'AUR62028768' => 'cqu', 'AUR62028886' => 'cqu', 'AUR62029563' => 'cqu', 'AUR62038832' => 'cqu', 'BcaB01g04149' => 'bca', 'BcaB03g12940' => 'bca', 'BcaB03g13090' => 'bca', 'BcaB03g14466' => 'bca', 'BcaB05g24035' => 'bca', 'BcaC01g06050' => 'bca', 'BcaC04g19148' => 'bca', 'BcaC04g20761' => 'bca', 'BcaC06g32845' => 'bca', 'BcaC07g41274' => 'bca', 'BcaC09g50827' => 'bca', 'BcaNung00741' => 'bca', 'BcaNung00742' => 'bca', 'BcaNung01859' => 'bca', 'BcaNung03985' => 'bca', 'BcaNung03989' => 'bca', 'BcaNung05661' => 'bca', 'BolC1t00257H' => 'bol', 'BolC1t01956H' => 'bol', 'BolC2t06534H' => 'bol', 'BolC3t14334H' => 'bol', 'BolC5t30451H' => 'bol', 'BolC7t45880H' => 'bol', 'BolC7t46586H' => 'bol', 'BolC8t49301H' => 'bol', 'BolC8t51837H' => 'bol', 'BolC9t56822H' => 'bol', 'BolC9t59235H' => 'bol', 'BraA01t00234Z' => 'bra', 'BraA01t01563Z' => 'bra', 'BraA02t05147Z' => 'bra', 'BraA03t10947Z' => 'bra', 'BraA03t14633Z' => 'bra', 'BraA08t35112Z' => 'bra', 'BraA09t41330Z' => 'bra', 'BraA10t44570Z' => 'bra', 'C01p02670' => 'bna', 'C01p20260' => 'bna', 'C02p05890' => 'bna', 'C03p19530' => 'bna', 'C05p17470' => 'bna', 'C07p53900' => 'bna', 'C07p61630' => 'bna', 'C08p16800' => 'bna', 'C08p42810' => 'bna', 'C09p39480' => 'bna', 'C09p63980' => 'bna', 'CAN.G1001.7' => 'can', 'CAN.G1034.55' => 'can', 'CAN.G143.7' => 'can', 'CAN.G3340.1' => 'can', 'CAN.G358.19' => 'can', 'CAN.G373.2' => 'can', 'CAN.G674.16' => 'can', 'CAN.G674.17' => 'can', 'CAN.G674.18' => 'can', 'CAN.G732.2' => 'can', 'CAN.G732.3' => 'can', 'CAN.G993.39' => 'can', 'CANSAT01G2052' => 'cansat', 'CANSAT80G0070' => 'cansat', 'CANSAT80G0483' => 'cansat', 'CANSAT80G0625' => 'cansat', 'CARHR019690' => 'chi', 'CARHR080280' => 'chi', 'CARHR152750' => 'chi', 'CARHR152760' => 'chi', 'CARHR152770' => 'chi', 'CARHR200340' => 'chi', 'CARHR232370' => 'chi', 'CARHR244670' => 'chi', 'CARHR244680' => 'chi', 'CARHR257520' => 'chi', 'Carub.0001s1872' => 'cru', 'Carub.0006s1130' => 'cru', 'Carub.0007s0396' => 'cru', 'Carub.0007s0397' => 'cru', 'Carub.0007s1608' => 'cru', 'Carub.0008s1068' => 'cru', 'Carub.0008s1077' => 'cru', 'Ca_16158_v3' => 'car', 'Ca_17571_v3' => 'car', 'Ca_21936_v3' => 'car', 'Ca_22350_v3' => 'car', 'CBR_g22445' => 'cbr', 'CBR_g26290' => 'cbr', 'Cc04_g09610' => 'ccan', 'Cc04_g12280' => 'ccan', 'Cc07_g10230' => 'ccan', 'CDE02G0093' => 'cde', 'CDE02G0701' => 'cde', 'CDE04G1050' => 'cde', 'CDE05G1833' => 'cde', 'CDE05G3058' => 'cde', 'CDE05G3380' => 'cde', 'CDE06G0536' => 'cde', 'Cfa006923' => 'cfa', 'Cfa009402' => 'cfa', 'Cfa018751' => 'cfa', 'Cfa019164' => 'cfa', 'Cfa022935' => 'cfa', 'Ciclev10019081m.g' => 'ccl', 'Ciclev10025076m.g' => 'ccl', 'Ciclev10030712m.g' => 'ccl', 'Ciclev10033760m.g' => 'ccl', 'CiPaw.05G105600' => 'cil', 'CiPaw.08G136700' => 'cil', 'CiPaw.11G003900' => 'cil', 'CiPaw.11G023700' => 'cil', 'CiPaw.12G003700' => 'cil', 'ClCG06G017100' => 'cla', 'ClCG06G018110' => 'cla', 'ClCG07G008800' => 'cla', 'ClCG07G015330' => 'cla', 'COL.COLO4_13698' => 'col', 'COL.COLO4_16659' => 'col', 'COL.COLO4_21986' => 'col', 'COL.COLO4_24049' => 'col', 'COL.COLO4_29061' => 'col', 'COL.COLO4_29075' => 'col', 'COL.COLO4_30094' => 'col', 'Cpa.g.c33689' => 'cpa', 'Cpa.g.sc108.39' => 'cpa', 'Cpa.g.sc108.41' => 'cpa', 'Cpa.g.sc1163.1' => 'cpa', 'Cpa.g.sc4.155' => 'cpa', 'Cpa.g.sc6.194' => 'cpa', 'CsaV3_1G000340' => 'csa', 'CsaV3_1G001400' => 'csa', 'CsaV3_4G002220' => 'csa', 'CsaV3_4G005370' => 'csa', 'CSS0007487' => 'camsi', 'CSS0008066' => 'camsi', 'CSS0009120' => 'camsi', 'CSS0015512' => 'camsi', 'CSS0022409' => 'camsi', 'CSS0025358' => 'camsi', 'CSS0044547' => 'camsi', 'DCAR_013057' => 'dca', 'DCAR_015058' => 'dca', 'DCAR_016027' => 'dca', 'DCAR_017327' => 'dca', 'DCAR_020743' => 'dca', 'DCAR_026157' => 'dca', 'DCAR_032339' => 'dca', 'DCAR_032340' => 'dca', 'Dinv11200' => 'din', 'Dinv11201' => 'din', 'Dinv20631' => 'din', 'Dinv23182' => 'din', 'Dinv33466' => 'din', 'Dinv33583' => 'din', 'Dinv38565' => 'din', 'Duzib068G0200' => 'dzi', 'Duzib147G0132' => 'dzi', 'Duzib147G0635' => 'dzi', 'Duzib205G1670' => 'dzi', 'Duzib251G0606' => 'dzi', 'ECA232G3336' => 'eca', 'ECA232G3763' => 'eca', 'ECA232G4845' => 'eca', 'ECA234G1607' => 'eca', 'ECA246G0932' => 'eca', 'ECA247G0781' => 'eca', 'ECA247G1932' => 'eca', 'ECA247G2079' => 'eca', 'ECA247G3338' => 'eca', 'ECA247G4115' => 'eca', 'EL10Ac3g06552' => 'bvu', 'EL10Ac5g10721' => 'bvu', 'EL10Ac5g10722' => 'bvu', 'EL10Ac5g10723' => 'bvu', 'EL10Ac5g11361' => 'bvu', 'EL10Ac6g13553' => 'bvu', 'EL10As8g23872' => 'bvu', 'Eucgr.B00250' => 'egr', 'Eucgr.B00251' => 'egr', 'Eucgr.B03533' => 'egr', 'Eucgr.I02381' => 'egr', 'Eucgr.K02700' => 'egr', 'FAN02G0174' => 'fan', 'FAN02G3146' => 'fan', 'FAN04G1672' => 'fan', 'FAN04G2273' => 'fan', 'FAN05G2791' => 'fan', 'FAN05G4035' => 'fan', 'FAN07G0834' => 'fan', 'FAN08G1198' => 'fan', 'FAN09G4182' => 'fan', 'FAN12G0496' => 'fan', 'FAN13G1027' => 'fan', 'FAN13G2951' => 'fan', 'FAN14G0705' => 'fan', 'FAN14G0720' => 'fan', 'FAN17G0201' => 'fan', 'FAN17G2665' => 'fan', 'FAN18G1456' => 'fan', 'FAN18G1525' => 'fan', 'FAN18G3500' => 'fan', 'FAN28G2670' => 'fan', 'FvH4_1g12391' => 'fve', 'FvH4_4g23220' => 'fve', 'FvH4_5g08810' => 'fve', 'FvH4_5g28960' => 'fve', 'FvH4_6g42820' => 'fve', 'FvH4_6g51110' => 'fve', 'Glyma.02G051802' => 'gma', 'Glyma.04G185300' => 'gma', 'Glyma.05G202900' => 'gma', 'Glyma.08G010300' => 'gma', 'Glyma.16G131900' => 'gma', 'Glyma.17G087900' => 'gma', 'Gohir.A07G048600' => 'ghi', 'Gohir.A11G179000' => 'ghi', 'Gohir.A12G140900' => 'ghi', 'Gohir.A12G140950' => 'ghi', 'Gohir.A12G191700' => 'ghi', 'Gohir.A13G086300' => 'ghi', 'Gohir.D07G052900' => 'ghi', 'Gohir.D11G186600' => 'ghi', 'Gohir.D12G145575' => 'ghi', 'Gohir.D12G145650' => 'ghi', 'Gohir.D12G145725' => 'ghi', 'Gohir.D12G194050' => 'ghi', 'Gohir.D13G091800' => 'ghi', 'Gorai.001G055900' => 'gra', 'Gorai.007G198400' => 'gra', 'Gorai.008G157000' => 'gra', 'Gorai.008G157100' => 'gra', 'Gorai.008G208700' => 'gra', 'Gorai.010G138700' => 'gra', 'GSVIVG01000977001' => 'vvi', 'GSVIVG01007708001' => 'vvi', 'GSVIVG01008587001' => 'vvi', 'GSVIVG01018849001' => 'vvi', 'GSVIVG01032432001' => 'vvi', 'HanXRQChr02g0034131' => 'han', 'HanXRQChr02g0035981' => 'han', 'HanXRQChr02g0035991' => 'han', 'HanXRQChr05g0155611' => 'han', 'HanXRQChr05g0155621' => 'han', 'HanXRQChr08g0236501' => 'han', 'HanXRQChr09g0261321' => 'han', 'HanXRQChr09g0272081' => 'han', 'HanXRQChr10g0310741' => 'han', 'HanXRQChr11g0325591' => 'han', 'HanXRQChr12g0385691' => 'han', 'HanXRQChr13g0387801' => 'han', 'HanXRQChr15g0463011' => 'han', 'Haze_03826' => 'cav', 'Haze_03827' => 'cav', 'Haze_07183' => 'cav', 'Haze_07537' => 'cav', 'Haze_07539' => 'cav', 'Haze_12461' => 'cav', 'Haze_16115' => 'cav', 'Haze_16808' => 'cav', 'Haze_18531' => 'cav', 'Hma1.2p1_0046F.1_g026700' => 'hma', 'Hma1.2p1_0046F.1_g026710' => 'hma', 'Hma1.2p1_0168F.1_g074340' => 'hma', 'Hma1.2p1_0266F.1_g107030' => 'hma', 'Hma1.2p1_0266F.1_g107060' => 'hma', 'Hma1.2p1_0275F.1_g110510' => 'hma', 'Hma1.2p1_0592F.1_g185490' => 'hma', 'Hma1.2p1_0592F.1_g185500' => 'hma', 'Hma1.2p1_0592F.1_g185510' => 'hma', 'Hma1.2p1_0592F.1_g185520' => 'hma', 'Hma1.2p1_0592F.1_g185530' => 'hma', 'Hma1.2p1_0818F.1_g223450' => 'hma', 'HPP92_009708' => 'vpl', 'HPP92_009793' => 'vpl', 'HPP92_009796' => 'vpl', 'HPP92_009797' => 'vpl', 'HPP92_014940' => 'vpl', 'HPP92_014988' => 'vpl', 'Hund02463' => 'sun', 'Hund02760' => 'sun', 'Hund05071' => 'sun', 'Hund10108' => 'sun', 'Hund11204' => 'sun', 'Hund14016' => 'sun', 'Hund16464' => 'sun', 'Lalb_Chr09g0333391' => 'lal', 'Lalb_Chr11g0070461' => 'lal', 'Lalb_Chr12g0201671' => 'lal', 'Lalb_Chr13g0297161' => 'lal', 'Lj1g0002823' => 'lja', 'Lj3C1074T6' => 'lonja', 'Lj4A212T28' => 'lonja', 'Lj4g0005516' => 'lja', 'Lj4g0013705' => 'lja', 'Lj4g0027865' => 'lja', 'Lj5C92G16' => 'lonja', 'Lj5C92T12' => 'lonja', 'Lj7C596T3' => 'lonja', 'Lj9A446G59' => 'lonja', 'Lj9A482G21' => 'lonja', 'Lsat_1_v5_gn_1_28261' => 'lsa', 'Lsat_1_v5_gn_1_28281' => 'lsa', 'Lsat_1_v5_gn_1_32721' => 'lsa', 'Lsat_1_v5_gn_4_151760' => 'lsa', 'Lsat_1_v5_gn_4_2120' => 'lsa', 'Lsat_1_v5_gn_4_75761' => 'lsa', 'Lsat_1_v5_gn_5_10920' => 'lsa', 'Manes.02G099900' => 'mes', 'Manes.11G096200' => 'mes', 'Manes.12G007200' => 'mes', 'Manes.14G048300' => 'mes', 'Manes.17G114700' => 'mes', 'Mapoly0002s0070' => 'mpo', 'Mapoly0029s0099' => 'mpo', 'MBI07_g24742_MAGBIO' => 'mbi', 'MBI10_g27988_MAGBIO' => 'mbi', 'MBI11_g13057_MAGBIO' => 'mbi', 'MD02G1137200' => 'mdo', 'MD06G1137200' => 'mdo', 'MD07G1122300' => 'mdo', 'MD09G1078200' => 'mdo', 'MD13G1123700' => 'mdo', 'MD14G1151900' => 'mdo', 'MD17G1030900' => 'mdo', 'MD17G1068200' => 'mdo', 'MD17G1068600' => 'mdo', 'Medtr3g077540' => 'mtr', 'Medtr4g105530' => 'mtr', 'Medtr8g076580' => 'mtr', 'Medtr8g076590' => 'mtr', 'Medtr8g096410' => 'mtr', 'MELO3C016411.2' => 'cme', 'MELO3C017780.2' => 'cme', 'MELO3C022560.2' => 'cme', 'MELO3C026187.2' => 'cme', 'MELO3C026286.2' => 'cme', 'MELO3C032854.2' => 'cme', 'Migut.H02495' => 'egut', 'Migut.I00561' => 'egut', 'Migut.K01015' => 'egut', 'Migut.K01016' => 'egut', 'Migut.L00743' => 'egut', 'Migut.L00744' => 'egut', 'Migut.L00746' => 'egut', 'Migut.L00798' => 'egut', 'Migut.L00799' => 'egut', 'Migut.N02096' => 'egut', 'MSTRG.11259' => 'ama', 'MSTRG.23142' => 'ama', 'MSTRG.2499' => 'ama', 'Nitab4.5_0000003g0730' => 'nta', 'Nitab4.5_0000137g0020' => 'nta', 'Nitab4.5_0000721g0210' => 'nta', 'Nitab4.5_0000723g0050' => 'nta', 'Nitab4.5_0000913g0070' => 'nta', 'Nitab4.5_0001332g0040' => 'nta', 'Nitab4.5_0001771g0050' => 'nta', 'Nitab4.5_0001918g0050' => 'nta', 'Nitab4.5_0002686g0030' => 'nta', 'Nitab4.5_0003156g0020' => 'nta', 'Nitab4.5_0003383g0040' => 'nta', 'Nitab4.5_0003918g0010' => 'nta', 'Nitab4.5_0006760g0010' => 'nta', 'Nn1g05981' => 'nnu', 'Nn1g06288' => 'nnu', 'Nn3g16371' => 'nnu', 'Nn3g16786' => 'nnu', 'Nn4g22232' => 'nnu', 'Oeu005144.1' => 'oeu', 'Oeu005145.1' => 'oeu', 'Oeu011348.1' => 'oeu', 'Oeu016415.1' => 'oeu', 'Oeu023501.1' => 'oeu', 'Oeu044473.1' => 'oeu', 'Oeu048892.2' => 'oeu', 'Os01g0549200' => 'osa', 'Os02g0469300' => 'osa', 'Os04g0311100' => 'osa', 'Os06g0474900' => 'osa', 'Os10g0181700' => 'osa', 'Os11g0454800' => 'osa', 'Peaxi162Scf00037g00714' => 'pax', 'Peaxi162Scf00084g01217' => 'pax', 'Peaxi162Scf00257g00217' => 'pax', 'Peaxi162Scf00516g00215' => 'pax', 'Peaxi162Scf00689g00123' => 'pax', 'PGR044G2719' => 'pgr', 'PGR083G1360' => 'pgr', 'PGR102G2849' => 'pgr', 'PGR119G2534' => 'pgr', 'PGSC0003DMG400003538' => 'stu', 'PGSC0003DMG400028138' => 'stu', 'PGSC0003DMG400031732' => 'stu', 'PGSC0003DMG400038165' => 'stu', 'Phvul.002G284600' => 'pvu', 'Phvul.003G258200' => 'pvu', 'Phvul.009G176500' => 'pvu', 'Potri.003G167201' => 'ptr', 'Potri.005G118400' => 'ptr', 'Potri.012G089000' => 'ptr', 'Potri.012G102800' => 'ptr', 'Potri.015G079400' => 'ptr', 'Potri.015G100900' => 'ptr', 'Pp3c14_9810' => 'ppa', 'Pp3c15_10450' => 'ppa', 'Pp3c20_19150' => 'ppa', 'Pp3c23_12740' => 'ppa', 'Pp3c23_6310' => 'ppa', 'Pp3c24_3720' => 'ppa', 'Pp3c27_2580' => 'ppa', 'Pp3c9_8990' => 'ppa', 'PRCOL_00002854' => 'pco', 'Prupe.1G221200' => 'ppe', 'Prupe.3G289000' => 'ppe', 'Prupe.5G147000' => 'ppe', 'Prupe.6G157300' => 'ppe', 'Prupe.7G163400' => 'ppe', 'Psat0s2177g0040' => 'psa', 'Psat3g174760' => 'psa', 'Psat3g192160' => 'psa', 'Psat4g058520' => 'psa', 'Psat4g096840' => 'psa', 'Psat7g037320' => 'psa', 'PSO017G1274' => 'pso', 'PSO017G5166' => 'pso', 'PSO063G4558' => 'pso', 'PSO170G4458' => 'pso', 'PSO170G5005' => 'pso', 'PSO210G6156' => 'pso', 'PSO210G6635' => 'pso', 'PSO210G7397' => 'pso', 'PSO210G7700' => 'pso', 'PSO455G0035' => 'pso', 'PSO455G0180' => 'pso', 'PSO478G4515' => 'pso', 'PSO832G1305' => 'pso', 'PSO832G3489' => 'pso', 'QL02p075247' => 'qlo', 'QL03p051148' => 'qlo', 'QL05p010313' => 'qlo', 'QL06p034627' => 'qlo', 'QL10p001889' => 'qlo', 'QL10p010846' => 'qlo', 'RcHm_v2.0_Chr1g0350621' => 'rch', 'RcHm_v2.0_Chr1g0350641' => 'rch', 'RcHm_v2.0_Chr2g0092891' => 'rch', 'RcHm_v2.0_Chr2g0100251' => 'rch', 'RcHm_v2.0_Chr2g0158661' => 'rch', 'RcHm_v2.0_Chr2g0172741' => 'rch', 'RcHm_v2.0_Chr4g0429571' => 'rch', 'RcHm_v2.0_Chr5g0042471' => 'rch', 'RcHm_v2.0_Chr7g0189451' => 'rch', 'Rhsim08G0052000' => 'rsi', 'Rhsim08G0174400' => 'rsi', 'Rhsim08G0193200' => 'rsi', 'Rhsim10G0214800' => 'rsi', 'Rhsim10G0214900' => 'rsi', 'Rhsim10G0215000' => 'rsi', 'Rhsim12G0022900' => 'rsi', 'Rhsim12G0177500' => 'rsi', 'Rhsim12G0177700' => 'rsi', 'Sabra03G0122600' => 'sbr', 'Sabra05G0097400' => 'sbr', 'Sabra12G0064100' => 'sbr', 'Sabra15G0121300' => 'sbr', 'SalBow2G0642' => 'sbo', 'SalBow5G2667' => 'sbo', 'SalBow5G4873' => 'sbo', 'SalBow8G2395' => 'sbo', 'Sc03g0003290' => 'sci', 'Sc10g0010130' => 'sci', 'Sc22g0003650' => 'sci', 'Sed0001603' => 'sed', 'Sed0004259' => 'sed', 'Sed0006789' => 'sed', 'Sed0011838' => 'sed', 'Sed0012964' => 'sed', 'Sed0016383' => 'sed', 'Sed0019010' => 'sed', 'Sed0020188' => 'sed', 'SEGI_04702' => 'sgi', 'SEGI_17231' => 'sgi', 'SEGI_18877' => 'sgi', 'SEGI_25196' => 'sgi', 'SEGI_25515' => 'sgi', 'SEGI_28445' => 'sgi', 'SEGI_37452' => 'sgi', 'SGA_v2.0_scaffold188G40336' => 'sas', 'SGA_v2.0_scaffold228G43247' => 'sas', 'SGA_v2.0_scaffold280G46853' => 'sas', 'SGA_v2.0_scaffold34G13808' => 'sas', 'SGA_v2.0_scaffold40G15576' => 'sas', 'SGA_v2.0_scaffold611G53188' => 'sas', 'SGA_v2.0_scaffold78G25461' => 'sas', 'SGA_v2.0_scaffold90G27888' => 'sas', 'SHI08601' => 'shi', 'SHI08606' => 'shi', 'SHI17117' => 'shi', 'SHI17119' => 'shi', 'SMO118G0201' => 'smo', 'SMO169G0247' => 'smo', 'SMO176G0006' => 'smo', 'SMO176G0015' => 'smo', 'SMO202G0006' => 'smo', 'SMO240G0050' => 'smo', 'SMO286G0009' => 'smo', 'SMO338G0033' => 'smo', 'SMO356G0533' => 'smo', 'SMO364G0382' => 'smo', 'SMO367G0166' => 'smo', 'SMO367G1098' => 'smo', 'Solyc01g009920.3' => 'sly', 'Solyc01g099300.3' => 'sly', 'Solyc02g084700.3' => 'sly', 'Solyc03g097520.3' => 'sly', 'Solyc06g071580.3' => 'sly', 'Solyc10g081760.3' => 'sly', 'Sopen01g005480' => 'spe', 'Sopen01g042850' => 'spe', 'Sopen02g029370' => 'spe', 'Sopen03g028280' => 'spe', 'Sopen06g027870' => 'spe', 'Sopen10g032270' => 'spe', 'Sp5g18180' => 'spa', 'Sp6g12880' => 'spa', 'Sp6g30850' => 'spa', 'Sp7g22960' => 'spa', 'Sp7g34010' => 'spa', 'SpUn1326_0010' => 'spa', 'TAR371G0242' => 'tar', 'TAR622G0638' => 'tar', 'TAR628G1548' => 'tar', 'TAR629G1079' => 'tar', 'TAR629G3413' => 'tar', 'THA.LOC104804249' => 'tha', 'THA.LOC104808315' => 'tha', 'THA.LOC104809238' => 'tha', 'THA.LOC104825484' => 'tha', 'Thecc.01G025500' => 'tca', 'Thecc.03G015800' => 'tca', 'Thecc.03G018000' => 'tca', 'Thecc.03G134800' => 'tca', 'Thecc.04G014700' => 'tca', 'Thhalv10006991m.g' => 'esa', 'Thhalv10012707m.g' => 'esa', 'Thhalv10015739m.g' => 'esa', 'Thhalv10024553m.g' => 'esa', 'Thhalv10024673m.g' => 'esa', 'Thhalv10029187m.g' => 'esa', 'TPR.G12971' => 'tpr', 'TPR.G29396' => 'tpr', 'TPR.G33376' => 'tpr', 'TPR.G35508' => 'tpr', 'TPR.G35516' => 'tpr', 'TPR.G37317' => 'tpr', 'TPR.G37389' => 'tpr', 'TPR.G37523' => 'tpr', 'TPR.G559' => 'tpr', 'TWI14G0070' => 'twi', 'TWI14G0729' => 'twi', 'TWI18G0596' => 'twi', 'TWI39G0780' => 'twi', 'TWI39G0850' => 'twi', 'TWI73G1052' => 'twi', 'unitig_52.g17485' => 'ugi', 'unitig_61.g26355' => 'ugi', 'vmacro01040' => 'vma', 'vmacro16731' => 'vma', 'vmacro18270' => 'vma', 'vmacro19142' => 'vma', 'vmacro19407' => 'vma', 'vmacro19408' => 'vma', 'vmacro21899' => 'vma', 'vmacro21900' => 'vma', 'vmacro21901' => 'vma', 'VMungo0251G0490' => 'vmu', 'VMungo0251G1748' => 'vmu', 'VMungo1309G0421' => 'vmu', 'Zm00001eb086500' => 'zma', 'Zm00001eb150680' => 'zma', 'Zm00001eb162330' => 'zma', 'Zm00001eb203130' => 'zma', 'Zm00001eb369480' => 'zma', 'Zm00001eb382340' => 'zma', 'Zm00001eb416360' => 'zma' ), 'gf_id' => 'HOM05D000902', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000902' ), 'data_identifier' => 'HOM05D000902', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000902', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '663', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02470' => 'bna', 'A01p16260' => 'bna', 'A02p01680' => 'bna', 'A03p16600' => 'bna', 'A03p55660' => 'bna', 'A03p64160' => 'bna', 'A03p64170' => 'bna', 'A08p31900' => 'bna', 'A09p59530' => 'bna', 'A10p08230' => 'bna', 'A10p25090' => 'bna', 'Aa31LG3G7100' => 'aar', 'Aa31LG3G7110' => 'aar', 'Aa31LG6G13160' => 'aar', 'Aa31LG7G10770' => 'aar', 'Aa31LG7G3830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2723' => 'aag', 'Actinidia08045' => 'ach', 'Actinidia08888' => 'ach', 'Actinidia18333' => 'ach', 'Actinidia19334' => 'ach', 'Actinidia25552' => 'ach', 'Actinidia26089' => 'ach', 'Actinidia30615' => 'ach', 'Actinidia30616' => 'ach', 'Actinidia33083' => 'ach', 'Actinidia35762' => 'ach', 'Ah.02g110620' => 'amhyb', 'Ah.11g046390' => 'amhyb', 'AL1G31670' => 'aly', 'AL6G23730' => 'aly', 'AL7G14740' => 'aly', 'AL7G14750' => 'aly', 'AL7G14760' => 'aly', 'AL7G28220' => 'aly', 'AL8G24940' => 'aly', 'Aqoxy3G01665' => 'aox', 'Aqoxy3G02853' => 'aox', 'Aqoxy5G01513' => 'aox', 'Aqoxy5G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8SKA4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ75LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKDA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0LJZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7REX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZP4YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWX7I5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2QKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS0L9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPCD8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q161UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC7XCF' => 'arhy', 'AT1G19100' => 'ath', 'AT4G24970' => 'ath', 'AT4G36270' => 'ath', 'AT4G36280' => 'ath', 'AT4G36290' => 'ath', 'AT5G13130' => 'ath', 'AT5G50780' => 'ath', 'ATR0582G266' => 'atr', 'ATR0661G195' => 'atr', 'ATR1152G031' => 'atr', 'Atru.chr11.2382' => 'acertr', 'Atru.chr12.2337' => 'acertr', 'Atru.chr3.744' => 'acertr', 'Atru.chr6.1870' => 'acertr', 'Atru.chr9.2515' => 'acertr', 'AUR62004120' => 'cqu', 'AUR62005667' => 'cqu', 'AUR62007634' => 'cqu', 'AUR62008186' => 'cqu', 'AUR62008187' => 'cqu', 'AUR62008188' => 'cqu', 'AUR62027954' => 'cqu', 'AUR62028766' => 'cqu', 'AUR62028767' => 'cqu', 'AUR62028768' => 'cqu', 'AUR62028886' => 'cqu', 'AUR62029563' => 'cqu', 'AUR62038832' => 'cqu', 'BcaB01g04149' => 'bca', 'BcaB03g12940' => 'bca', 'BcaB03g13090' => 'bca', 'BcaB03g14466' => 'bca', 'BcaB05g24035' => 'bca', 'BcaC01g06050' => 'bca', 'BcaC04g19148' => 'bca', 'BcaC04g20761' => 'bca', 'BcaC06g32845' => 'bca', 'BcaC07g41274' => 'bca', 'BcaC09g50827' => 'bca', 'BcaNung00741' => 'bca', 'BcaNung00742' => 'bca', 'BcaNung01859' => 'bca', 'BcaNung03985' => 'bca', 'BcaNung03989' => 'bca', 'BcaNung05661' => 'bca', 'BolC1t00257H' => 'bol', 'BolC1t01956H' => 'bol', 'BolC2t06534H' => 'bol', 'BolC3t14334H' => 'bol', 'BolC5t30451H' => 'bol', 'BolC7t45880H' => 'bol', 'BolC7t46586H' => 'bol', 'BolC8t49301H' => 'bol', 'BolC8t51837H' => 'bol', 'BolC9t56822H' => 'bol', 'BolC9t59235H' => 'bol', 'BraA01t00234Z' => 'bra', 'BraA01t01563Z' => 'bra', 'BraA02t05147Z' => 'bra', 'BraA03t10947Z' => 'bra', 'BraA03t14633Z' => 'bra', 'BraA08t35112Z' => 'bra', 'BraA09t41330Z' => 'bra', 'BraA10t44570Z' => 'bra', 'C01p02670' => 'bna', 'C01p20260' => 'bna', 'C02p05890' => 'bna', 'C03p19530' => 'bna', 'C05p17470' => 'bna', 'C07p53900' => 'bna', 'C07p61630' => 'bna', 'C08p16800' => 'bna', 'C08p42810' => 'bna', 'C09p39480' => 'bna', 'C09p63980' => 'bna', 'CAN.G1001.7' => 'can', 'CAN.G1034.55' => 'can', 'CAN.G143.7' => 'can', 'CAN.G3340.1' => 'can', 'CAN.G358.19' => 'can', 'CAN.G373.2' => 'can', 'CAN.G674.16' => 'can', 'CAN.G674.17' => 'can', 'CAN.G674.18' => 'can', 'CAN.G732.2' => 'can', 'CAN.G732.3' => 'can', 'CAN.G993.39' => 'can', 'CANSAT01G2052' => 'cansat', 'CANSAT80G0070' => 'cansat', 'CANSAT80G0483' => 'cansat', 'CANSAT80G0625' => 'cansat', 'CARHR019690' => 'chi', 'CARHR080280' => 'chi', 'CARHR152750' => 'chi', 'CARHR152760' => 'chi', 'CARHR152770' => 'chi', 'CARHR200340' => 'chi', 'CARHR232370' => 'chi', 'CARHR244670' => 'chi', 'CARHR244680' => 'chi', 'CARHR257520' => 'chi', 'Carub.0001s1872' => 'cru', 'Carub.0006s1130' => 'cru', 'Carub.0007s0396' => 'cru', 'Carub.0007s0397' => 'cru', 'Carub.0007s1608' => 'cru', 'Carub.0008s1068' => 'cru', 'Carub.0008s1077' => 'cru', 'Ca_16158_v3' => 'car', 'Ca_17571_v3' => 'car', 'Ca_21936_v3' => 'car', 'Ca_22350_v3' => 'car', 'CBR_g22445' => 'cbr', 'CBR_g26290' => 'cbr', 'Cc04_g09610' => 'ccan', 'Cc04_g12280' => 'ccan', 'Cc07_g10230' => 'ccan', 'CDE02G0093' => 'cde', 'CDE02G0701' => 'cde', 'CDE04G1050' => 'cde', 'CDE05G1833' => 'cde', 'CDE05G3058' => 'cde', 'CDE05G3380' => 'cde', 'CDE06G0536' => 'cde', 'Cfa006923' => 'cfa', 'Cfa009402' => 'cfa', 'Cfa018751' => 'cfa', 'Cfa019164' => 'cfa', 'Cfa022935' => 'cfa', 'Ciclev10019081m.g' => 'ccl', 'Ciclev10025076m.g' => 'ccl', 'Ciclev10030712m.g' => 'ccl', 'Ciclev10033760m.g' => 'ccl', 'CiPaw.05G105600' => 'cil', 'CiPaw.08G136700' => 'cil', 'CiPaw.11G003900' => 'cil', 'CiPaw.11G023700' => 'cil', 'CiPaw.12G003700' => 'cil', 'ClCG06G017100' => 'cla', 'ClCG06G018110' => 'cla', 'ClCG07G008800' => 'cla', 'ClCG07G015330' => 'cla', 'COL.COLO4_13698' => 'col', 'COL.COLO4_16659' => 'col', 'COL.COLO4_21986' => 'col', 'COL.COLO4_24049' => 'col', 'COL.COLO4_29061' => 'col', 'COL.COLO4_29075' => 'col', 'COL.COLO4_30094' => 'col', 'Cpa.g.c33689' => 'cpa', 'Cpa.g.sc108.39' => 'cpa', 'Cpa.g.sc108.41' => 'cpa', 'Cpa.g.sc1163.1' => 'cpa', 'Cpa.g.sc4.155' => 'cpa', 'Cpa.g.sc6.194' => 'cpa', 'CsaV3_1G000340' => 'csa', 'CsaV3_1G001400' => 'csa', 'CsaV3_4G002220' => 'csa', 'CsaV3_4G005370' => 'csa', 'CSS0007487' => 'camsi', 'CSS0008066' => 'camsi', 'CSS0009120' => 'camsi', 'CSS0015512' => 'camsi', 'CSS0022409' => 'camsi', 'CSS0025358' => 'camsi', 'CSS0044547' => 'camsi', 'DCAR_013057' => 'dca', 'DCAR_015058' => 'dca', 'DCAR_016027' => 'dca', 'DCAR_017327' => 'dca', 'DCAR_020743' => 'dca', 'DCAR_026157' => 'dca', 'DCAR_032339' => 'dca', 'DCAR_032340' => 'dca', 'Dinv11200' => 'din', 'Dinv11201' => 'din', 'Dinv20631' => 'din', 'Dinv23182' => 'din', 'Dinv33466' => 'din', 'Dinv33583' => 'din', 'Dinv38565' => 'din', 'Duzib068G0200' => 'dzi', 'Duzib147G0132' => 'dzi', 'Duzib147G0635' => 'dzi', 'Duzib205G1670' => 'dzi', 'Duzib251G0606' => 'dzi', 'ECA232G3336' => 'eca', 'ECA232G3763' => 'eca', 'ECA232G4845' => 'eca', 'ECA234G1607' => 'eca', 'ECA246G0932' => 'eca', 'ECA247G0781' => 'eca', 'ECA247G1932' => 'eca', 'ECA247G2079' => 'eca', 'ECA247G3338' => 'eca', 'ECA247G4115' => 'eca', 'EL10Ac3g06552' => 'bvu', 'EL10Ac5g10721' => 'bvu', 'EL10Ac5g10722' => 'bvu', 'EL10Ac5g10723' => 'bvu', 'EL10Ac5g11361' => 'bvu', 'EL10Ac6g13553' => 'bvu', 'EL10As8g23872' => 'bvu', 'Eucgr.B00250' => 'egr', 'Eucgr.B00251' => 'egr', 'Eucgr.B03533' => 'egr', 'Eucgr.I02381' => 'egr', 'Eucgr.K02700' => 'egr', 'FAN02G0174' => 'fan', 'FAN02G3146' => 'fan', 'FAN04G1672' => 'fan', 'FAN04G2273' => 'fan', 'FAN05G2791' => 'fan', 'FAN05G4035' => 'fan', 'FAN07G0834' => 'fan', 'FAN08G1198' => 'fan', 'FAN09G4182' => 'fan', 'FAN12G0496' => 'fan', 'FAN13G1027' => 'fan', 'FAN13G2951' => 'fan', 'FAN14G0705' => 'fan', 'FAN14G0720' => 'fan', 'FAN17G0201' => 'fan', 'FAN17G2665' => 'fan', 'FAN18G1456' => 'fan', 'FAN18G1525' => 'fan', 'FAN18G3500' => 'fan', 'FAN28G2670' => 'fan', 'FvH4_1g12391' => 'fve', 'FvH4_4g23220' => 'fve', 'FvH4_5g08810' => 'fve', 'FvH4_5g28960' => 'fve', 'FvH4_6g42820' => 'fve', 'FvH4_6g51110' => 'fve', 'Glyma.02G051802' => 'gma', 'Glyma.04G185300' => 'gma', 'Glyma.05G202900' => 'gma', 'Glyma.08G010300' => 'gma', 'Glyma.16G131900' => 'gma', 'Glyma.17G087900' => 'gma', 'Gohir.A07G048600' => 'ghi', 'Gohir.A11G179000' => 'ghi', 'Gohir.A12G140900' => 'ghi', 'Gohir.A12G140950' => 'ghi', 'Gohir.A12G191700' => 'ghi', 'Gohir.A13G086300' => 'ghi', 'Gohir.D07G052900' => 'ghi', 'Gohir.D11G186600' => 'ghi', 'Gohir.D12G145575' => 'ghi', 'Gohir.D12G145650' => 'ghi', 'Gohir.D12G145725' => 'ghi', 'Gohir.D12G194050' => 'ghi', 'Gohir.D13G091800' => 'ghi', 'Gorai.001G055900' => 'gra', 'Gorai.007G198400' => 'gra', 'Gorai.008G157000' => 'gra', 'Gorai.008G157100' => 'gra', 'Gorai.008G208700' => 'gra', 'Gorai.010G138700' => 'gra', 'GSVIVG01000977001' => 'vvi', 'GSVIVG01007708001' => 'vvi', 'GSVIVG01008587001' => 'vvi', 'GSVIVG01018849001' => 'vvi', 'GSVIVG01032432001' => 'vvi', 'HanXRQChr02g0034131' => 'han', 'HanXRQChr02g0035981' => 'han', 'HanXRQChr02g0035991' => 'han', 'HanXRQChr05g0155611' => 'han', 'HanXRQChr05g0155621' => 'han', 'HanXRQChr08g0236501' => 'han', 'HanXRQChr09g0261321' => 'han', 'HanXRQChr09g0272081' => 'han', 'HanXRQChr10g0310741' => 'han', 'HanXRQChr11g0325591' => 'han', 'HanXRQChr12g0385691' => 'han', 'HanXRQChr13g0387801' => 'han', 'HanXRQChr15g0463011' => 'han', 'Haze_03826' => 'cav', 'Haze_03827' => 'cav', 'Haze_07183' => 'cav', 'Haze_07537' => 'cav', 'Haze_07539' => 'cav', 'Haze_12461' => 'cav', 'Haze_16115' => 'cav', 'Haze_16808' => 'cav', 'Haze_18531' => 'cav', 'Hma1.2p1_0046F.1_g026700' => 'hma', 'Hma1.2p1_0046F.1_g026710' => 'hma', 'Hma1.2p1_0168F.1_g074340' => 'hma', 'Hma1.2p1_0266F.1_g107030' => 'hma', 'Hma1.2p1_0266F.1_g107060' => 'hma', 'Hma1.2p1_0275F.1_g110510' => 'hma', 'Hma1.2p1_0592F.1_g185490' => 'hma', 'Hma1.2p1_0592F.1_g185500' => 'hma', 'Hma1.2p1_0592F.1_g185510' => 'hma', 'Hma1.2p1_0592F.1_g185520' => 'hma', 'Hma1.2p1_0592F.1_g185530' => 'hma', 'Hma1.2p1_0818F.1_g223450' => 'hma', 'HPP92_009708' => 'vpl', 'HPP92_009793' => 'vpl', 'HPP92_009796' => 'vpl', 'HPP92_009797' => 'vpl', 'HPP92_014940' => 'vpl', 'HPP92_014988' => 'vpl', 'Hund02463' => 'sun', 'Hund02760' => 'sun', 'Hund05071' => 'sun', 'Hund10108' => 'sun', 'Hund11204' => 'sun', 'Hund14016' => 'sun', 'Hund16464' => 'sun', 'Lalb_Chr09g0333391' => 'lal', 'Lalb_Chr11g0070461' => 'lal', 'Lalb_Chr12g0201671' => 'lal', 'Lalb_Chr13g0297161' => 'lal', 'Lj1g0002823' => 'lja', 'Lj3C1074T6' => 'lonja', 'Lj4A212T28' => 'lonja', 'Lj4g0005516' => 'lja', 'Lj4g0013705' => 'lja', 'Lj4g0027865' => 'lja', 'Lj5C92G16' => 'lonja', 'Lj5C92T12' => 'lonja', 'Lj7C596T3' => 'lonja', 'Lj9A446G59' => 'lonja', 'Lj9A482G21' => 'lonja', 'Lsat_1_v5_gn_1_28261' => 'lsa', 'Lsat_1_v5_gn_1_28281' => 'lsa', 'Lsat_1_v5_gn_1_32721' => 'lsa', 'Lsat_1_v5_gn_4_151760' => 'lsa', 'Lsat_1_v5_gn_4_2120' => 'lsa', 'Lsat_1_v5_gn_4_75761' => 'lsa', 'Lsat_1_v5_gn_5_10920' => 'lsa', 'Manes.02G099900' => 'mes', 'Manes.11G096200' => 'mes', 'Manes.12G007200' => 'mes', 'Manes.14G048300' => 'mes', 'Manes.17G114700' => 'mes', 'Mapoly0002s0070' => 'mpo', 'Mapoly0029s0099' => 'mpo', 'MBI07_g24742_MAGBIO' => 'mbi', 'MBI10_g27988_MAGBIO' => 'mbi', 'MBI11_g13057_MAGBIO' => 'mbi', 'MD02G1137200' => 'mdo', 'MD06G1137200' => 'mdo', 'MD07G1122300' => 'mdo', 'MD09G1078200' => 'mdo', 'MD13G1123700' => 'mdo', 'MD14G1151900' => 'mdo', 'MD17G1030900' => 'mdo', 'MD17G1068200' => 'mdo', 'MD17G1068600' => 'mdo', 'Medtr3g077540' => 'mtr', 'Medtr4g105530' => 'mtr', 'Medtr8g076580' => 'mtr', 'Medtr8g076590' => 'mtr', 'Medtr8g096410' => 'mtr', 'MELO3C016411.2' => 'cme', 'MELO3C017780.2' => 'cme', 'MELO3C022560.2' => 'cme', 'MELO3C026187.2' => 'cme', 'MELO3C026286.2' => 'cme', 'MELO3C032854.2' => 'cme', 'Migut.H02495' => 'egut', 'Migut.I00561' => 'egut', 'Migut.K01015' => 'egut', 'Migut.K01016' => 'egut', 'Migut.L00743' => 'egut', 'Migut.L00744' => 'egut', 'Migut.L00746' => 'egut', 'Migut.L00798' => 'egut', 'Migut.L00799' => 'egut', 'Migut.N02096' => 'egut', 'MSTRG.11259' => 'ama', 'MSTRG.23142' => 'ama', 'MSTRG.2499' => 'ama', 'Nitab4.5_0000003g0730' => 'nta', 'Nitab4.5_0000137g0020' => 'nta', 'Nitab4.5_0000721g0210' => 'nta', 'Nitab4.5_0000723g0050' => 'nta', 'Nitab4.5_0000913g0070' => 'nta', 'Nitab4.5_0001332g0040' => 'nta', 'Nitab4.5_0001771g0050' => 'nta', 'Nitab4.5_0001918g0050' => 'nta', 'Nitab4.5_0002686g0030' => 'nta', 'Nitab4.5_0003156g0020' => 'nta', 'Nitab4.5_0003383g0040' => 'nta', 'Nitab4.5_0003918g0010' => 'nta', 'Nitab4.5_0006760g0010' => 'nta', 'Nn1g05981' => 'nnu', 'Nn1g06288' => 'nnu', 'Nn3g16371' => 'nnu', 'Nn3g16786' => 'nnu', 'Nn4g22232' => 'nnu', 'Oeu005144.1' => 'oeu', 'Oeu005145.1' => 'oeu', 'Oeu011348.1' => 'oeu', 'Oeu016415.1' => 'oeu', 'Oeu023501.1' => 'oeu', 'Oeu044473.1' => 'oeu', 'Oeu048892.2' => 'oeu', 'Os01g0549200' => 'osa', 'Os02g0469300' => 'osa', 'Os04g0311100' => 'osa', 'Os06g0474900' => 'osa', 'Os10g0181700' => 'osa', 'Os11g0454800' => 'osa', 'Peaxi162Scf00037g00714' => 'pax', 'Peaxi162Scf00084g01217' => 'pax', 'Peaxi162Scf00257g00217' => 'pax', 'Peaxi162Scf00516g00215' => 'pax', 'Peaxi162Scf00689g00123' => 'pax', 'PGR044G2719' => 'pgr', 'PGR083G1360' => 'pgr', 'PGR102G2849' => 'pgr', 'PGR119G2534' => 'pgr', 'PGSC0003DMG400003538' => 'stu', 'PGSC0003DMG400028138' => 'stu', 'PGSC0003DMG400031732' => 'stu', 'PGSC0003DMG400038165' => 'stu', 'Phvul.002G284600' => 'pvu', 'Phvul.003G258200' => 'pvu', 'Phvul.009G176500' => 'pvu', 'Potri.003G167201' => 'ptr', 'Potri.005G118400' => 'ptr', 'Potri.012G089000' => 'ptr', 'Potri.012G102800' => 'ptr', 'Potri.015G079400' => 'ptr', 'Potri.015G100900' => 'ptr', 'Pp3c14_9810' => 'ppa', 'Pp3c15_10450' => 'ppa', 'Pp3c20_19150' => 'ppa', 'Pp3c23_12740' => 'ppa', 'Pp3c23_6310' => 'ppa', 'Pp3c24_3720' => 'ppa', 'Pp3c27_2580' => 'ppa', 'Pp3c9_8990' => 'ppa', 'PRCOL_00002854' => 'pco', 'Prupe.1G221200' => 'ppe', 'Prupe.3G289000' => 'ppe', 'Prupe.5G147000' => 'ppe', 'Prupe.6G157300' => 'ppe', 'Prupe.7G163400' => 'ppe', 'Psat0s2177g0040' => 'psa', 'Psat3g174760' => 'psa', 'Psat3g192160' => 'psa', 'Psat4g058520' => 'psa', 'Psat4g096840' => 'psa', 'Psat7g037320' => 'psa', 'PSO017G1274' => 'pso', 'PSO017G5166' => 'pso', 'PSO063G4558' => 'pso', 'PSO170G4458' => 'pso', 'PSO170G5005' => 'pso', 'PSO210G6156' => 'pso', 'PSO210G6635' => 'pso', 'PSO210G7397' => 'pso', 'PSO210G7700' => 'pso', 'PSO455G0035' => 'pso', 'PSO455G0180' => 'pso', 'PSO478G4515' => 'pso', 'PSO832G1305' => 'pso', 'PSO832G3489' => 'pso', 'QL02p075247' => 'qlo', 'QL03p051148' => 'qlo', 'QL05p010313' => 'qlo', 'QL06p034627' => 'qlo', 'QL10p001889' => 'qlo', 'QL10p010846' => 'qlo', 'RcHm_v2.0_Chr1g0350621' => 'rch', 'RcHm_v2.0_Chr1g0350641' => 'rch', 'RcHm_v2.0_Chr2g0092891' => 'rch', 'RcHm_v2.0_Chr2g0100251' => 'rch', 'RcHm_v2.0_Chr2g0158661' => 'rch', 'RcHm_v2.0_Chr2g0172741' => 'rch', 'RcHm_v2.0_Chr4g0429571' => 'rch', 'RcHm_v2.0_Chr5g0042471' => 'rch', 'RcHm_v2.0_Chr7g0189451' => 'rch', 'Rhsim08G0052000' => 'rsi', 'Rhsim08G0174400' => 'rsi', 'Rhsim08G0193200' => 'rsi', 'Rhsim10G0214800' => 'rsi', 'Rhsim10G0214900' => 'rsi', 'Rhsim10G0215000' => 'rsi', 'Rhsim12G0022900' => 'rsi', 'Rhsim12G0177500' => 'rsi', 'Rhsim12G0177700' => 'rsi', 'Sabra03G0122600' => 'sbr', 'Sabra05G0097400' => 'sbr', 'Sabra12G0064100' => 'sbr', 'Sabra15G0121300' => 'sbr', 'SalBow2G0642' => 'sbo', 'SalBow5G2667' => 'sbo', 'SalBow5G4873' => 'sbo', 'SalBow8G2395' => 'sbo', 'Sc03g0003290' => 'sci', 'Sc10g0010130' => 'sci', 'Sc22g0003650' => 'sci', 'Sed0001603' => 'sed', 'Sed0004259' => 'sed', 'Sed0006789' => 'sed', 'Sed0011838' => 'sed', 'Sed0012964' => 'sed', 'Sed0016383' => 'sed', 'Sed0019010' => 'sed', 'Sed0020188' => 'sed', 'SEGI_04702' => 'sgi', 'SEGI_17231' => 'sgi', 'SEGI_18877' => 'sgi', 'SEGI_25196' => 'sgi', 'SEGI_25515' => 'sgi', 'SEGI_28445' => 'sgi', 'SEGI_37452' => 'sgi', 'SGA_v2.0_scaffold188G40336' => 'sas', 'SGA_v2.0_scaffold228G43247' => 'sas', 'SGA_v2.0_scaffold280G46853' => 'sas', 'SGA_v2.0_scaffold34G13808' => 'sas', 'SGA_v2.0_scaffold40G15576' => 'sas', 'SGA_v2.0_scaffold611G53188' => 'sas', 'SGA_v2.0_scaffold78G25461' => 'sas', 'SGA_v2.0_scaffold90G27888' => 'sas', 'SHI08601' => 'shi', 'SHI08606' => 'shi', 'SHI17117' => 'shi', 'SHI17119' => 'shi', 'SMO118G0201' => 'smo', 'SMO169G0247' => 'smo', 'SMO176G0006' => 'smo', 'SMO176G0015' => 'smo', 'SMO202G0006' => 'smo', 'SMO240G0050' => 'smo', 'SMO286G0009' => 'smo', 'SMO338G0033' => 'smo', 'SMO356G0533' => 'smo', 'SMO364G0382' => 'smo', 'SMO367G0166' => 'smo', 'SMO367G1098' => 'smo', 'Solyc01g009920.3' => 'sly', 'Solyc01g099300.3' => 'sly', 'Solyc02g084700.3' => 'sly', 'Solyc03g097520.3' => 'sly', 'Solyc06g071580.3' => 'sly', 'Solyc10g081760.3' => 'sly', 'Sopen01g005480' => 'spe', 'Sopen01g042850' => 'spe', 'Sopen02g029370' => 'spe', 'Sopen03g028280' => 'spe', 'Sopen06g027870' => 'spe', 'Sopen10g032270' => 'spe', 'Sp5g18180' => 'spa', 'Sp6g12880' => 'spa', 'Sp6g30850' => 'spa', 'Sp7g22960' => 'spa', 'Sp7g34010' => 'spa', 'SpUn1326_0010' => 'spa', 'TAR371G0242' => 'tar', 'TAR622G0638' => 'tar', 'TAR628G1548' => 'tar', 'TAR629G1079' => 'tar', 'TAR629G3413' => 'tar', 'THA.LOC104804249' => 'tha', 'THA.LOC104808315' => 'tha', 'THA.LOC104809238' => 'tha', 'THA.LOC104825484' => 'tha', 'Thecc.01G025500' => 'tca', 'Thecc.03G015800' => 'tca', 'Thecc.03G018000' => 'tca', 'Thecc.03G134800' => 'tca', 'Thecc.04G014700' => 'tca', 'Thhalv10006991m.g' => 'esa', 'Thhalv10012707m.g' => 'esa', 'Thhalv10015739m.g' => 'esa', 'Thhalv10024553m.g' => 'esa', 'Thhalv10024673m.g' => 'esa', 'Thhalv10029187m.g' => 'esa', 'TPR.G12971' => 'tpr', 'TPR.G29396' => 'tpr', 'TPR.G33376' => 'tpr', 'TPR.G35508' => 'tpr', 'TPR.G35516' => 'tpr', 'TPR.G37317' => 'tpr', 'TPR.G37389' => 'tpr', 'TPR.G37523' => 'tpr', 'TPR.G559' => 'tpr', 'TWI14G0070' => 'twi', 'TWI14G0729' => 'twi', 'TWI18G0596' => 'twi', 'TWI39G0780' => 'twi', 'TWI39G0850' => 'twi', 'TWI73G1052' => 'twi', 'unitig_52.g17485' => 'ugi', 'unitig_61.g26355' => 'ugi', 'vmacro01040' => 'vma', 'vmacro16731' => 'vma', 'vmacro18270' => 'vma', 'vmacro19142' => 'vma', 'vmacro19407' => 'vma', 'vmacro19408' => 'vma', 'vmacro21899' => 'vma', 'vmacro21900' => 'vma', 'vmacro21901' => 'vma', 'VMungo0251G0490' => 'vmu', 'VMungo0251G1748' => 'vmu', 'VMungo1309G0421' => 'vmu', 'Zm00001eb086500' => 'zma', 'Zm00001eb150680' => 'zma', 'Zm00001eb162330' => 'zma', 'Zm00001eb203130' => 'zma', 'Zm00001eb369480' => 'zma', 'Zm00001eb382340' => 'zma', 'Zm00001eb416360' => 'zma' ) $gf_id = 'HOM05D000902' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000902' ) $data_identifier = 'HOM05D000902' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 13, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 10, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 6, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 9, 'hma' => (int) 12, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 4, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 6, 'ppa' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 6, 'rch' => (int) 9, 'rsi' => (int) 9, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 12, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 3, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416360' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000902', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '663', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02470' => 'bna', 'A01p16260' => 'bna', 'A02p01680' => 'bna', 'A03p16600' => 'bna', 'A03p55660' => 'bna', 'A03p64160' => 'bna', 'A03p64170' => 'bna', 'A08p31900' => 'bna', 'A09p59530' => 'bna', 'A10p08230' => 'bna', 'A10p25090' => 'bna', 'Aa31LG3G7100' => 'aar', 'Aa31LG3G7110' => 'aar', 'Aa31LG6G13160' => 'aar', 'Aa31LG7G10770' => 'aar', 'Aa31LG7G3830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2723' => 'aag', 'Actinidia08045' => 'ach', 'Actinidia08888' => 'ach', 'Actinidia18333' => 'ach', 'Actinidia19334' => 'ach', 'Actinidia25552' => 'ach', 'Actinidia26089' => 'ach', 'Actinidia30615' => 'ach', 'Actinidia30616' => 'ach', 'Actinidia33083' => 'ach', 'Actinidia35762' => 'ach', 'Ah.02g110620' => 'amhyb', 'Ah.11g046390' => 'amhyb', 'AL1G31670' => 'aly', 'AL6G23730' => 'aly', 'AL7G14740' => 'aly', 'AL7G14750' => 'aly', 'AL7G14760' => 'aly', 'AL7G28220' => 'aly', 'AL8G24940' => 'aly', 'Aqoxy3G01665' => 'aox', 'Aqoxy3G02853' => 'aox', 'Aqoxy5G01513' => 'aox', 'Aqoxy5G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8SKA4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ75LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKDA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0LJZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7REX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZP4YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWX7I5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2QKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS0L9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPCD8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q161UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC7XCF' => 'arhy', 'AT1G19100' => 'ath', 'AT4G24970' => 'ath', 'AT4G36270' => 'ath', 'AT4G36280' => 'ath', 'AT4G36290' => 'ath', 'AT5G13130' => 'ath', 'AT5G50780' => 'ath', 'ATR0582G266' => 'atr', 'ATR0661G195' => 'atr', 'ATR1152G031' => 'atr', 'Atru.chr11.2382' => 'acertr', 'Atru.chr12.2337' => 'acertr', 'Atru.chr3.744' => 'acertr', 'Atru.chr6.1870' => 'acertr', 'Atru.chr9.2515' => 'acertr', 'AUR62004120' => 'cqu', 'AUR62005667' => 'cqu', 'AUR62007634' => 'cqu', 'AUR62008186' => 'cqu', 'AUR62008187' => 'cqu', 'AUR62008188' => 'cqu', 'AUR62027954' => 'cqu', 'AUR62028766' => 'cqu', 'AUR62028767' => 'cqu', 'AUR62028768' => 'cqu', 'AUR62028886' => 'cqu', 'AUR62029563' => 'cqu', 'AUR62038832' => 'cqu', 'BcaB01g04149' => 'bca', 'BcaB03g12940' => 'bca', 'BcaB03g13090' => 'bca', 'BcaB03g14466' => 'bca', 'BcaB05g24035' => 'bca', 'BcaC01g06050' => 'bca', 'BcaC04g19148' => 'bca', 'BcaC04g20761' => 'bca', 'BcaC06g32845' => 'bca', 'BcaC07g41274' => 'bca', 'BcaC09g50827' => 'bca', 'BcaNung00741' => 'bca', 'BcaNung00742' => 'bca', 'BcaNung01859' => 'bca', 'BcaNung03985' => 'bca', 'BcaNung03989' => 'bca', 'BcaNung05661' => 'bca', 'BolC1t00257H' => 'bol', 'BolC1t01956H' => 'bol', 'BolC2t06534H' => 'bol', 'BolC3t14334H' => 'bol', 'BolC5t30451H' => 'bol', 'BolC7t45880H' => 'bol', 'BolC7t46586H' => 'bol', 'BolC8t49301H' => 'bol', 'BolC8t51837H' => 'bol', 'BolC9t56822H' => 'bol', 'BolC9t59235H' => 'bol', 'BraA01t00234Z' => 'bra', 'BraA01t01563Z' => 'bra', 'BraA02t05147Z' => 'bra', 'BraA03t10947Z' => 'bra', 'BraA03t14633Z' => 'bra', 'BraA08t35112Z' => 'bra', 'BraA09t41330Z' => 'bra', 'BraA10t44570Z' => 'bra', 'C01p02670' => 'bna', 'C01p20260' => 'bna', 'C02p05890' => 'bna', 'C03p19530' => 'bna', 'C05p17470' => 'bna', 'C07p53900' => 'bna', 'C07p61630' => 'bna', 'C08p16800' => 'bna', 'C08p42810' => 'bna', 'C09p39480' => 'bna', 'C09p63980' => 'bna', 'CAN.G1001.7' => 'can', 'CAN.G1034.55' => 'can', 'CAN.G143.7' => 'can', 'CAN.G3340.1' => 'can', 'CAN.G358.19' => 'can', 'CAN.G373.2' => 'can', 'CAN.G674.16' => 'can', 'CAN.G674.17' => 'can', 'CAN.G674.18' => 'can', 'CAN.G732.2' => 'can', 'CAN.G732.3' => 'can', 'CAN.G993.39' => 'can', 'CANSAT01G2052' => 'cansat', 'CANSAT80G0070' => 'cansat', 'CANSAT80G0483' => 'cansat', 'CANSAT80G0625' => 'cansat', 'CARHR019690' => 'chi', 'CARHR080280' => 'chi', 'CARHR152750' => 'chi', 'CARHR152760' => 'chi', 'CARHR152770' => 'chi', 'CARHR200340' => 'chi', 'CARHR232370' => 'chi', 'CARHR244670' => 'chi', 'CARHR244680' => 'chi', 'CARHR257520' => 'chi', 'Carub.0001s1872' => 'cru', 'Carub.0006s1130' => 'cru', 'Carub.0007s0396' => 'cru', 'Carub.0007s0397' => 'cru', 'Carub.0007s1608' => 'cru', 'Carub.0008s1068' => 'cru', 'Carub.0008s1077' => 'cru', 'Ca_16158_v3' => 'car', 'Ca_17571_v3' => 'car', 'Ca_21936_v3' => 'car', 'Ca_22350_v3' => 'car', 'CBR_g22445' => 'cbr', 'CBR_g26290' => 'cbr', 'Cc04_g09610' => 'ccan', 'Cc04_g12280' => 'ccan', 'Cc07_g10230' => 'ccan', 'CDE02G0093' => 'cde', 'CDE02G0701' => 'cde', 'CDE04G1050' => 'cde', 'CDE05G1833' => 'cde', 'CDE05G3058' => 'cde', 'CDE05G3380' => 'cde', 'CDE06G0536' => 'cde', 'Cfa006923' => 'cfa', 'Cfa009402' => 'cfa', 'Cfa018751' => 'cfa', 'Cfa019164' => 'cfa', 'Cfa022935' => 'cfa', 'Ciclev10019081m.g' => 'ccl', 'Ciclev10025076m.g' => 'ccl', 'Ciclev10030712m.g' => 'ccl', 'Ciclev10033760m.g' => 'ccl', 'CiPaw.05G105600' => 'cil', 'CiPaw.08G136700' => 'cil', 'CiPaw.11G003900' => 'cil', 'CiPaw.11G023700' => 'cil', 'CiPaw.12G003700' => 'cil', 'ClCG06G017100' => 'cla', 'ClCG06G018110' => 'cla', 'ClCG07G008800' => 'cla', 'ClCG07G015330' => 'cla', 'COL.COLO4_13698' => 'col', 'COL.COLO4_16659' => 'col', 'COL.COLO4_21986' => 'col', 'COL.COLO4_24049' => 'col', 'COL.COLO4_29061' => 'col', 'COL.COLO4_29075' => 'col', 'COL.COLO4_30094' => 'col', 'Cpa.g.c33689' => 'cpa', 'Cpa.g.sc108.39' => 'cpa', 'Cpa.g.sc108.41' => 'cpa', 'Cpa.g.sc1163.1' => 'cpa', 'Cpa.g.sc4.155' => 'cpa', 'Cpa.g.sc6.194' => 'cpa', 'CsaV3_1G000340' => 'csa', 'CsaV3_1G001400' => 'csa', 'CsaV3_4G002220' => 'csa', 'CsaV3_4G005370' => 'csa', 'CSS0007487' => 'camsi', 'CSS0008066' => 'camsi', 'CSS0009120' => 'camsi', 'CSS0015512' => 'camsi', 'CSS0022409' => 'camsi', 'CSS0025358' => 'camsi', 'CSS0044547' => 'camsi', 'DCAR_013057' => 'dca', 'DCAR_015058' => 'dca', 'DCAR_016027' => 'dca', 'DCAR_017327' => 'dca', 'DCAR_020743' => 'dca', 'DCAR_026157' => 'dca', 'DCAR_032339' => 'dca', 'DCAR_032340' => 'dca', 'Dinv11200' => 'din', 'Dinv11201' => 'din', 'Dinv20631' => 'din', 'Dinv23182' => 'din', 'Dinv33466' => 'din', 'Dinv33583' => 'din', 'Dinv38565' => 'din', 'Duzib068G0200' => 'dzi', 'Duzib147G0132' => 'dzi', 'Duzib147G0635' => 'dzi', 'Duzib205G1670' => 'dzi', 'Duzib251G0606' => 'dzi', 'ECA232G3336' => 'eca', 'ECA232G3763' => 'eca', 'ECA232G4845' => 'eca', 'ECA234G1607' => 'eca', 'ECA246G0932' => 'eca', 'ECA247G0781' => 'eca', 'ECA247G1932' => 'eca', 'ECA247G2079' => 'eca', 'ECA247G3338' => 'eca', 'ECA247G4115' => 'eca', 'EL10Ac3g06552' => 'bvu', 'EL10Ac5g10721' => 'bvu', 'EL10Ac5g10722' => 'bvu', 'EL10Ac5g10723' => 'bvu', 'EL10Ac5g11361' => 'bvu', 'EL10Ac6g13553' => 'bvu', 'EL10As8g23872' => 'bvu', 'Eucgr.B00250' => 'egr', 'Eucgr.B00251' => 'egr', 'Eucgr.B03533' => 'egr', 'Eucgr.I02381' => 'egr', 'Eucgr.K02700' => 'egr', 'FAN02G0174' => 'fan', 'FAN02G3146' => 'fan', 'FAN04G1672' => 'fan', 'FAN04G2273' => 'fan', 'FAN05G2791' => 'fan', 'FAN05G4035' => 'fan', 'FAN07G0834' => 'fan', 'FAN08G1198' => 'fan', 'FAN09G4182' => 'fan', 'FAN12G0496' => 'fan', 'FAN13G1027' => 'fan', 'FAN13G2951' => 'fan', 'FAN14G0705' => 'fan', 'FAN14G0720' => 'fan', 'FAN17G0201' => 'fan', 'FAN17G2665' => 'fan', 'FAN18G1456' => 'fan', 'FAN18G1525' => 'fan', 'FAN18G3500' => 'fan', 'FAN28G2670' => 'fan', 'FvH4_1g12391' => 'fve', 'FvH4_4g23220' => 'fve', 'FvH4_5g08810' => 'fve', 'FvH4_5g28960' => 'fve', 'FvH4_6g42820' => 'fve', 'FvH4_6g51110' => 'fve', 'Glyma.02G051802' => 'gma', 'Glyma.04G185300' => 'gma', 'Glyma.05G202900' => 'gma', 'Glyma.08G010300' => 'gma', 'Glyma.16G131900' => 'gma', 'Glyma.17G087900' => 'gma', 'Gohir.A07G048600' => 'ghi', 'Gohir.A11G179000' => 'ghi', 'Gohir.A12G140900' => 'ghi', 'Gohir.A12G140950' => 'ghi', 'Gohir.A12G191700' => 'ghi', 'Gohir.A13G086300' => 'ghi', 'Gohir.D07G052900' => 'ghi', 'Gohir.D11G186600' => 'ghi', 'Gohir.D12G145575' => 'ghi', 'Gohir.D12G145650' => 'ghi', 'Gohir.D12G145725' => 'ghi', 'Gohir.D12G194050' => 'ghi', 'Gohir.D13G091800' => 'ghi', 'Gorai.001G055900' => 'gra', 'Gorai.007G198400' => 'gra', 'Gorai.008G157000' => 'gra', 'Gorai.008G157100' => 'gra', 'Gorai.008G208700' => 'gra', 'Gorai.010G138700' => 'gra', 'GSVIVG01000977001' => 'vvi', 'GSVIVG01007708001' => 'vvi', 'GSVIVG01008587001' => 'vvi', 'GSVIVG01018849001' => 'vvi', 'GSVIVG01032432001' => 'vvi', 'HanXRQChr02g0034131' => 'han', 'HanXRQChr02g0035981' => 'han', 'HanXRQChr02g0035991' => 'han', 'HanXRQChr05g0155611' => 'han', 'HanXRQChr05g0155621' => 'han', 'HanXRQChr08g0236501' => 'han', 'HanXRQChr09g0261321' => 'han', 'HanXRQChr09g0272081' => 'han', 'HanXRQChr10g0310741' => 'han', 'HanXRQChr11g0325591' => 'han', 'HanXRQChr12g0385691' => 'han', 'HanXRQChr13g0387801' => 'han', 'HanXRQChr15g0463011' => 'han', 'Haze_03826' => 'cav', 'Haze_03827' => 'cav', 'Haze_07183' => 'cav', 'Haze_07537' => 'cav', 'Haze_07539' => 'cav', 'Haze_12461' => 'cav', 'Haze_16115' => 'cav', 'Haze_16808' => 'cav', 'Haze_18531' => 'cav', 'Hma1.2p1_0046F.1_g026700' => 'hma', 'Hma1.2p1_0046F.1_g026710' => 'hma', 'Hma1.2p1_0168F.1_g074340' => 'hma', 'Hma1.2p1_0266F.1_g107030' => 'hma', 'Hma1.2p1_0266F.1_g107060' => 'hma', 'Hma1.2p1_0275F.1_g110510' => 'hma', 'Hma1.2p1_0592F.1_g185490' => 'hma', 'Hma1.2p1_0592F.1_g185500' => 'hma', 'Hma1.2p1_0592F.1_g185510' => 'hma', 'Hma1.2p1_0592F.1_g185520' => 'hma', 'Hma1.2p1_0592F.1_g185530' => 'hma', 'Hma1.2p1_0818F.1_g223450' => 'hma', 'HPP92_009708' => 'vpl', 'HPP92_009793' => 'vpl', 'HPP92_009796' => 'vpl', 'HPP92_009797' => 'vpl', 'HPP92_014940' => 'vpl', 'HPP92_014988' => 'vpl', 'Hund02463' => 'sun', 'Hund02760' => 'sun', 'Hund05071' => 'sun', 'Hund10108' => 'sun', 'Hund11204' => 'sun', 'Hund14016' => 'sun', 'Hund16464' => 'sun', 'Lalb_Chr09g0333391' => 'lal', 'Lalb_Chr11g0070461' => 'lal', 'Lalb_Chr12g0201671' => 'lal', 'Lalb_Chr13g0297161' => 'lal', 'Lj1g0002823' => 'lja', 'Lj3C1074T6' => 'lonja', 'Lj4A212T28' => 'lonja', 'Lj4g0005516' => 'lja', 'Lj4g0013705' => 'lja', 'Lj4g0027865' => 'lja', 'Lj5C92G16' => 'lonja', 'Lj5C92T12' => 'lonja', 'Lj7C596T3' => 'lonja', 'Lj9A446G59' => 'lonja', 'Lj9A482G21' => 'lonja', 'Lsat_1_v5_gn_1_28261' => 'lsa', 'Lsat_1_v5_gn_1_28281' => 'lsa', 'Lsat_1_v5_gn_1_32721' => 'lsa', 'Lsat_1_v5_gn_4_151760' => 'lsa', 'Lsat_1_v5_gn_4_2120' => 'lsa', 'Lsat_1_v5_gn_4_75761' => 'lsa', 'Lsat_1_v5_gn_5_10920' => 'lsa', 'Manes.02G099900' => 'mes', 'Manes.11G096200' => 'mes', 'Manes.12G007200' => 'mes', 'Manes.14G048300' => 'mes', 'Manes.17G114700' => 'mes', 'Mapoly0002s0070' => 'mpo', 'Mapoly0029s0099' => 'mpo', 'MBI07_g24742_MAGBIO' => 'mbi', 'MBI10_g27988_MAGBIO' => 'mbi', 'MBI11_g13057_MAGBIO' => 'mbi', 'MD02G1137200' => 'mdo', 'MD06G1137200' => 'mdo', 'MD07G1122300' => 'mdo', 'MD09G1078200' => 'mdo', 'MD13G1123700' => 'mdo', 'MD14G1151900' => 'mdo', 'MD17G1030900' => 'mdo', 'MD17G1068200' => 'mdo', 'MD17G1068600' => 'mdo', 'Medtr3g077540' => 'mtr', 'Medtr4g105530' => 'mtr', 'Medtr8g076580' => 'mtr', 'Medtr8g076590' => 'mtr', 'Medtr8g096410' => 'mtr', 'MELO3C016411.2' => 'cme', 'MELO3C017780.2' => 'cme', 'MELO3C022560.2' => 'cme', 'MELO3C026187.2' => 'cme', 'MELO3C026286.2' => 'cme', 'MELO3C032854.2' => 'cme', 'Migut.H02495' => 'egut', 'Migut.I00561' => 'egut', 'Migut.K01015' => 'egut', 'Migut.K01016' => 'egut', 'Migut.L00743' => 'egut', 'Migut.L00744' => 'egut', 'Migut.L00746' => 'egut', 'Migut.L00798' => 'egut', 'Migut.L00799' => 'egut', 'Migut.N02096' => 'egut', 'MSTRG.11259' => 'ama', 'MSTRG.23142' => 'ama', 'MSTRG.2499' => 'ama', 'Nitab4.5_0000003g0730' => 'nta', 'Nitab4.5_0000137g0020' => 'nta', 'Nitab4.5_0000721g0210' => 'nta', 'Nitab4.5_0000723g0050' => 'nta', 'Nitab4.5_0000913g0070' => 'nta', 'Nitab4.5_0001332g0040' => 'nta', 'Nitab4.5_0001771g0050' => 'nta', 'Nitab4.5_0001918g0050' => 'nta', 'Nitab4.5_0002686g0030' => 'nta', 'Nitab4.5_0003156g0020' => 'nta', 'Nitab4.5_0003383g0040' => 'nta', 'Nitab4.5_0003918g0010' => 'nta', 'Nitab4.5_0006760g0010' => 'nta', 'Nn1g05981' => 'nnu', 'Nn1g06288' => 'nnu', 'Nn3g16371' => 'nnu', 'Nn3g16786' => 'nnu', 'Nn4g22232' => 'nnu', 'Oeu005144.1' => 'oeu', 'Oeu005145.1' => 'oeu', 'Oeu011348.1' => 'oeu', 'Oeu016415.1' => 'oeu', 'Oeu023501.1' => 'oeu', 'Oeu044473.1' => 'oeu', 'Oeu048892.2' => 'oeu', 'Os01g0549200' => 'osa', 'Os02g0469300' => 'osa', 'Os04g0311100' => 'osa', 'Os06g0474900' => 'osa', 'Os10g0181700' => 'osa', 'Os11g0454800' => 'osa', 'Peaxi162Scf00037g00714' => 'pax', 'Peaxi162Scf00084g01217' => 'pax', 'Peaxi162Scf00257g00217' => 'pax', 'Peaxi162Scf00516g00215' => 'pax', 'Peaxi162Scf00689g00123' => 'pax', 'PGR044G2719' => 'pgr', 'PGR083G1360' => 'pgr', 'PGR102G2849' => 'pgr', 'PGR119G2534' => 'pgr', 'PGSC0003DMG400003538' => 'stu', 'PGSC0003DMG400028138' => 'stu', 'PGSC0003DMG400031732' => 'stu', 'PGSC0003DMG400038165' => 'stu', 'Phvul.002G284600' => 'pvu', 'Phvul.003G258200' => 'pvu', 'Phvul.009G176500' => 'pvu', 'Potri.003G167201' => 'ptr', 'Potri.005G118400' => 'ptr', 'Potri.012G089000' => 'ptr', 'Potri.012G102800' => 'ptr', 'Potri.015G079400' => 'ptr', 'Potri.015G100900' => 'ptr', 'Pp3c14_9810' => 'ppa', 'Pp3c15_10450' => 'ppa', 'Pp3c20_19150' => 'ppa', 'Pp3c23_12740' => 'ppa', 'Pp3c23_6310' => 'ppa', 'Pp3c24_3720' => 'ppa', 'Pp3c27_2580' => 'ppa', 'Pp3c9_8990' => 'ppa', 'PRCOL_00002854' => 'pco', 'Prupe.1G221200' => 'ppe', 'Prupe.3G289000' => 'ppe', 'Prupe.5G147000' => 'ppe', 'Prupe.6G157300' => 'ppe', 'Prupe.7G163400' => 'ppe', 'Psat0s2177g0040' => 'psa', 'Psat3g174760' => 'psa', 'Psat3g192160' => 'psa', 'Psat4g058520' => 'psa', 'Psat4g096840' => 'psa', 'Psat7g037320' => 'psa', 'PSO017G1274' => 'pso', 'PSO017G5166' => 'pso', 'PSO063G4558' => 'pso', 'PSO170G4458' => 'pso', 'PSO170G5005' => 'pso', 'PSO210G6156' => 'pso', 'PSO210G6635' => 'pso', 'PSO210G7397' => 'pso', 'PSO210G7700' => 'pso', 'PSO455G0035' => 'pso', 'PSO455G0180' => 'pso', 'PSO478G4515' => 'pso', 'PSO832G1305' => 'pso', 'PSO832G3489' => 'pso', 'QL02p075247' => 'qlo', 'QL03p051148' => 'qlo', 'QL05p010313' => 'qlo', 'QL06p034627' => 'qlo', 'QL10p001889' => 'qlo', 'QL10p010846' => 'qlo', 'RcHm_v2.0_Chr1g0350621' => 'rch', 'RcHm_v2.0_Chr1g0350641' => 'rch', 'RcHm_v2.0_Chr2g0092891' => 'rch', 'RcHm_v2.0_Chr2g0100251' => 'rch', 'RcHm_v2.0_Chr2g0158661' => 'rch', 'RcHm_v2.0_Chr2g0172741' => 'rch', 'RcHm_v2.0_Chr4g0429571' => 'rch', 'RcHm_v2.0_Chr5g0042471' => 'rch', 'RcHm_v2.0_Chr7g0189451' => 'rch', 'Rhsim08G0052000' => 'rsi', 'Rhsim08G0174400' => 'rsi', 'Rhsim08G0193200' => 'rsi', 'Rhsim10G0214800' => 'rsi', 'Rhsim10G0214900' => 'rsi', 'Rhsim10G0215000' => 'rsi', 'Rhsim12G0022900' => 'rsi', 'Rhsim12G0177500' => 'rsi', 'Rhsim12G0177700' => 'rsi', 'Sabra03G0122600' => 'sbr', 'Sabra05G0097400' => 'sbr', 'Sabra12G0064100' => 'sbr', 'Sabra15G0121300' => 'sbr', 'SalBow2G0642' => 'sbo', 'SalBow5G2667' => 'sbo', 'SalBow5G4873' => 'sbo', 'SalBow8G2395' => 'sbo', 'Sc03g0003290' => 'sci', 'Sc10g0010130' => 'sci', 'Sc22g0003650' => 'sci', 'Sed0001603' => 'sed', 'Sed0004259' => 'sed', 'Sed0006789' => 'sed', 'Sed0011838' => 'sed', 'Sed0012964' => 'sed', 'Sed0016383' => 'sed', 'Sed0019010' => 'sed', 'Sed0020188' => 'sed', 'SEGI_04702' => 'sgi', 'SEGI_17231' => 'sgi', 'SEGI_18877' => 'sgi', 'SEGI_25196' => 'sgi', 'SEGI_25515' => 'sgi', 'SEGI_28445' => 'sgi', 'SEGI_37452' => 'sgi', 'SGA_v2.0_scaffold188G40336' => 'sas', 'SGA_v2.0_scaffold228G43247' => 'sas', 'SGA_v2.0_scaffold280G46853' => 'sas', 'SGA_v2.0_scaffold34G13808' => 'sas', 'SGA_v2.0_scaffold40G15576' => 'sas', 'SGA_v2.0_scaffold611G53188' => 'sas', 'SGA_v2.0_scaffold78G25461' => 'sas', 'SGA_v2.0_scaffold90G27888' => 'sas', 'SHI08601' => 'shi', 'SHI08606' => 'shi', 'SHI17117' => 'shi', 'SHI17119' => 'shi', 'SMO118G0201' => 'smo', 'SMO169G0247' => 'smo', 'SMO176G0006' => 'smo', 'SMO176G0015' => 'smo', 'SMO202G0006' => 'smo', 'SMO240G0050' => 'smo', 'SMO286G0009' => 'smo', 'SMO338G0033' => 'smo', 'SMO356G0533' => 'smo', 'SMO364G0382' => 'smo', 'SMO367G0166' => 'smo', 'SMO367G1098' => 'smo', 'Solyc01g009920.3' => 'sly', 'Solyc01g099300.3' => 'sly', 'Solyc02g084700.3' => 'sly', 'Solyc03g097520.3' => 'sly', 'Solyc06g071580.3' => 'sly', 'Solyc10g081760.3' => 'sly', 'Sopen01g005480' => 'spe', 'Sopen01g042850' => 'spe', 'Sopen02g029370' => 'spe', 'Sopen03g028280' => 'spe', 'Sopen06g027870' => 'spe', 'Sopen10g032270' => 'spe', 'Sp5g18180' => 'spa', 'Sp6g12880' => 'spa', 'Sp6g30850' => 'spa', 'Sp7g22960' => 'spa', 'Sp7g34010' => 'spa', 'SpUn1326_0010' => 'spa', 'TAR371G0242' => 'tar', 'TAR622G0638' => 'tar', 'TAR628G1548' => 'tar', 'TAR629G1079' => 'tar', 'TAR629G3413' => 'tar', 'THA.LOC104804249' => 'tha', 'THA.LOC104808315' => 'tha', 'THA.LOC104809238' => 'tha', 'THA.LOC104825484' => 'tha', 'Thecc.01G025500' => 'tca', 'Thecc.03G015800' => 'tca', 'Thecc.03G018000' => 'tca', 'Thecc.03G134800' => 'tca', 'Thecc.04G014700' => 'tca', 'Thhalv10006991m.g' => 'esa', 'Thhalv10012707m.g' => 'esa', 'Thhalv10015739m.g' => 'esa', 'Thhalv10024553m.g' => 'esa', 'Thhalv10024673m.g' => 'esa', 'Thhalv10029187m.g' => 'esa', 'TPR.G12971' => 'tpr', 'TPR.G29396' => 'tpr', 'TPR.G33376' => 'tpr', 'TPR.G35508' => 'tpr', 'TPR.G35516' => 'tpr', 'TPR.G37317' => 'tpr', 'TPR.G37389' => 'tpr', 'TPR.G37523' => 'tpr', 'TPR.G559' => 'tpr', 'TWI14G0070' => 'twi', 'TWI14G0729' => 'twi', 'TWI18G0596' => 'twi', 'TWI39G0780' => 'twi', 'TWI39G0850' => 'twi', 'TWI73G1052' => 'twi', 'unitig_52.g17485' => 'ugi', 'unitig_61.g26355' => 'ugi', 'vmacro01040' => 'vma', 'vmacro16731' => 'vma', 'vmacro18270' => 'vma', 'vmacro19142' => 'vma', 'vmacro19407' => 'vma', 'vmacro19408' => 'vma', 'vmacro21899' => 'vma', 'vmacro21900' => 'vma', 'vmacro21901' => 'vma', 'VMungo0251G0490' => 'vmu', 'VMungo0251G1748' => 'vmu', 'VMungo1309G0421' => 'vmu', 'Zm00001eb086500' => 'zma', 'Zm00001eb150680' => 'zma', 'Zm00001eb162330' => 'zma', 'Zm00001eb203130' => 'zma', 'Zm00001eb369480' => 'zma', 'Zm00001eb382340' => 'zma', 'Zm00001eb416360' => 'zma' ), 'gf_id' => 'HOM05D000902', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000902' ), 'data_identifier' => 'HOM05D000902', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000902', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '663', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02470' => 'bna', 'A01p16260' => 'bna', 'A02p01680' => 'bna', 'A03p16600' => 'bna', 'A03p55660' => 'bna', 'A03p64160' => 'bna', 'A03p64170' => 'bna', 'A08p31900' => 'bna', 'A09p59530' => 'bna', 'A10p08230' => 'bna', 'A10p25090' => 'bna', 'Aa31LG3G7100' => 'aar', 'Aa31LG3G7110' => 'aar', 'Aa31LG6G13160' => 'aar', 'Aa31LG7G10770' => 'aar', 'Aa31LG7G3830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2723' => 'aag', 'Actinidia08045' => 'ach', 'Actinidia08888' => 'ach', 'Actinidia18333' => 'ach', 'Actinidia19334' => 'ach', 'Actinidia25552' => 'ach', 'Actinidia26089' => 'ach', 'Actinidia30615' => 'ach', 'Actinidia30616' => 'ach', 'Actinidia33083' => 'ach', 'Actinidia35762' => 'ach', 'Ah.02g110620' => 'amhyb', 'Ah.11g046390' => 'amhyb', 'AL1G31670' => 'aly', 'AL6G23730' => 'aly', 'AL7G14740' => 'aly', 'AL7G14750' => 'aly', 'AL7G14760' => 'aly', 'AL7G28220' => 'aly', 'AL8G24940' => 'aly', 'Aqoxy3G01665' => 'aox', 'Aqoxy3G02853' => 'aox', 'Aqoxy5G01513' => 'aox', 'Aqoxy5G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8SKA4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ75LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKDA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0LJZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7REX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZP4YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWX7I5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2QKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS0L9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPCD8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q161UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC7XCF' => 'arhy', 'AT1G19100' => 'ath', 'AT4G24970' => 'ath', 'AT4G36270' => 'ath', 'AT4G36280' => 'ath', 'AT4G36290' => 'ath', 'AT5G13130' => 'ath', 'AT5G50780' => 'ath', 'ATR0582G266' => 'atr', 'ATR0661G195' => 'atr', 'ATR1152G031' => 'atr', 'Atru.chr11.2382' => 'acertr', 'Atru.chr12.2337' => 'acertr', 'Atru.chr3.744' => 'acertr', 'Atru.chr6.1870' => 'acertr', 'Atru.chr9.2515' => 'acertr', 'AUR62004120' => 'cqu', 'AUR62005667' => 'cqu', 'AUR62007634' => 'cqu', 'AUR62008186' => 'cqu', 'AUR62008187' => 'cqu', 'AUR62008188' => 'cqu', 'AUR62027954' => 'cqu', 'AUR62028766' => 'cqu', 'AUR62028767' => 'cqu', 'AUR62028768' => 'cqu', 'AUR62028886' => 'cqu', 'AUR62029563' => 'cqu', 'AUR62038832' => 'cqu', 'BcaB01g04149' => 'bca', 'BcaB03g12940' => 'bca', 'BcaB03g13090' => 'bca', 'BcaB03g14466' => 'bca', 'BcaB05g24035' => 'bca', 'BcaC01g06050' => 'bca', 'BcaC04g19148' => 'bca', 'BcaC04g20761' => 'bca', 'BcaC06g32845' => 'bca', 'BcaC07g41274' => 'bca', 'BcaC09g50827' => 'bca', 'BcaNung00741' => 'bca', 'BcaNung00742' => 'bca', 'BcaNung01859' => 'bca', 'BcaNung03985' => 'bca', 'BcaNung03989' => 'bca', 'BcaNung05661' => 'bca', 'BolC1t00257H' => 'bol', 'BolC1t01956H' => 'bol', 'BolC2t06534H' => 'bol', 'BolC3t14334H' => 'bol', 'BolC5t30451H' => 'bol', 'BolC7t45880H' => 'bol', 'BolC7t46586H' => 'bol', 'BolC8t49301H' => 'bol', 'BolC8t51837H' => 'bol', 'BolC9t56822H' => 'bol', 'BolC9t59235H' => 'bol', 'BraA01t00234Z' => 'bra', 'BraA01t01563Z' => 'bra', 'BraA02t05147Z' => 'bra', 'BraA03t10947Z' => 'bra', 'BraA03t14633Z' => 'bra', 'BraA08t35112Z' => 'bra', 'BraA09t41330Z' => 'bra', 'BraA10t44570Z' => 'bra', 'C01p02670' => 'bna', 'C01p20260' => 'bna', 'C02p05890' => 'bna', 'C03p19530' => 'bna', 'C05p17470' => 'bna', 'C07p53900' => 'bna', 'C07p61630' => 'bna', 'C08p16800' => 'bna', 'C08p42810' => 'bna', 'C09p39480' => 'bna', 'C09p63980' => 'bna', 'CAN.G1001.7' => 'can', 'CAN.G1034.55' => 'can', 'CAN.G143.7' => 'can', 'CAN.G3340.1' => 'can', 'CAN.G358.19' => 'can', 'CAN.G373.2' => 'can', 'CAN.G674.16' => 'can', 'CAN.G674.17' => 'can', 'CAN.G674.18' => 'can', 'CAN.G732.2' => 'can', 'CAN.G732.3' => 'can', 'CAN.G993.39' => 'can', 'CANSAT01G2052' => 'cansat', 'CANSAT80G0070' => 'cansat', 'CANSAT80G0483' => 'cansat', 'CANSAT80G0625' => 'cansat', 'CARHR019690' => 'chi', 'CARHR080280' => 'chi', 'CARHR152750' => 'chi', 'CARHR152760' => 'chi', 'CARHR152770' => 'chi', 'CARHR200340' => 'chi', 'CARHR232370' => 'chi', 'CARHR244670' => 'chi', 'CARHR244680' => 'chi', 'CARHR257520' => 'chi', 'Carub.0001s1872' => 'cru', 'Carub.0006s1130' => 'cru', 'Carub.0007s0396' => 'cru', 'Carub.0007s0397' => 'cru', 'Carub.0007s1608' => 'cru', 'Carub.0008s1068' => 'cru', 'Carub.0008s1077' => 'cru', 'Ca_16158_v3' => 'car', 'Ca_17571_v3' => 'car', 'Ca_21936_v3' => 'car', 'Ca_22350_v3' => 'car', 'CBR_g22445' => 'cbr', 'CBR_g26290' => 'cbr', 'Cc04_g09610' => 'ccan', 'Cc04_g12280' => 'ccan', 'Cc07_g10230' => 'ccan', 'CDE02G0093' => 'cde', 'CDE02G0701' => 'cde', 'CDE04G1050' => 'cde', 'CDE05G1833' => 'cde', 'CDE05G3058' => 'cde', 'CDE05G3380' => 'cde', 'CDE06G0536' => 'cde', 'Cfa006923' => 'cfa', 'Cfa009402' => 'cfa', 'Cfa018751' => 'cfa', 'Cfa019164' => 'cfa', 'Cfa022935' => 'cfa', 'Ciclev10019081m.g' => 'ccl', 'Ciclev10025076m.g' => 'ccl', 'Ciclev10030712m.g' => 'ccl', 'Ciclev10033760m.g' => 'ccl', 'CiPaw.05G105600' => 'cil', 'CiPaw.08G136700' => 'cil', 'CiPaw.11G003900' => 'cil', 'CiPaw.11G023700' => 'cil', 'CiPaw.12G003700' => 'cil', 'ClCG06G017100' => 'cla', 'ClCG06G018110' => 'cla', 'ClCG07G008800' => 'cla', 'ClCG07G015330' => 'cla', 'COL.COLO4_13698' => 'col', 'COL.COLO4_16659' => 'col', 'COL.COLO4_21986' => 'col', 'COL.COLO4_24049' => 'col', 'COL.COLO4_29061' => 'col', 'COL.COLO4_29075' => 'col', 'COL.COLO4_30094' => 'col', 'Cpa.g.c33689' => 'cpa', 'Cpa.g.sc108.39' => 'cpa', 'Cpa.g.sc108.41' => 'cpa', 'Cpa.g.sc1163.1' => 'cpa', 'Cpa.g.sc4.155' => 'cpa', 'Cpa.g.sc6.194' => 'cpa', 'CsaV3_1G000340' => 'csa', 'CsaV3_1G001400' => 'csa', 'CsaV3_4G002220' => 'csa', 'CsaV3_4G005370' => 'csa', 'CSS0007487' => 'camsi', 'CSS0008066' => 'camsi', 'CSS0009120' => 'camsi', 'CSS0015512' => 'camsi', 'CSS0022409' => 'camsi', 'CSS0025358' => 'camsi', 'CSS0044547' => 'camsi', 'DCAR_013057' => 'dca', 'DCAR_015058' => 'dca', 'DCAR_016027' => 'dca', 'DCAR_017327' => 'dca', 'DCAR_020743' => 'dca', 'DCAR_026157' => 'dca', 'DCAR_032339' => 'dca', 'DCAR_032340' => 'dca', 'Dinv11200' => 'din', 'Dinv11201' => 'din', 'Dinv20631' => 'din', 'Dinv23182' => 'din', 'Dinv33466' => 'din', 'Dinv33583' => 'din', 'Dinv38565' => 'din', 'Duzib068G0200' => 'dzi', 'Duzib147G0132' => 'dzi', 'Duzib147G0635' => 'dzi', 'Duzib205G1670' => 'dzi', 'Duzib251G0606' => 'dzi', 'ECA232G3336' => 'eca', 'ECA232G3763' => 'eca', 'ECA232G4845' => 'eca', 'ECA234G1607' => 'eca', 'ECA246G0932' => 'eca', 'ECA247G0781' => 'eca', 'ECA247G1932' => 'eca', 'ECA247G2079' => 'eca', 'ECA247G3338' => 'eca', 'ECA247G4115' => 'eca', 'EL10Ac3g06552' => 'bvu', 'EL10Ac5g10721' => 'bvu', 'EL10Ac5g10722' => 'bvu', 'EL10Ac5g10723' => 'bvu', 'EL10Ac5g11361' => 'bvu', 'EL10Ac6g13553' => 'bvu', 'EL10As8g23872' => 'bvu', 'Eucgr.B00250' => 'egr', 'Eucgr.B00251' => 'egr', 'Eucgr.B03533' => 'egr', 'Eucgr.I02381' => 'egr', 'Eucgr.K02700' => 'egr', 'FAN02G0174' => 'fan', 'FAN02G3146' => 'fan', 'FAN04G1672' => 'fan', 'FAN04G2273' => 'fan', 'FAN05G2791' => 'fan', 'FAN05G4035' => 'fan', 'FAN07G0834' => 'fan', 'FAN08G1198' => 'fan', 'FAN09G4182' => 'fan', 'FAN12G0496' => 'fan', 'FAN13G1027' => 'fan', 'FAN13G2951' => 'fan', 'FAN14G0705' => 'fan', 'FAN14G0720' => 'fan', 'FAN17G0201' => 'fan', 'FAN17G2665' => 'fan', 'FAN18G1456' => 'fan', 'FAN18G1525' => 'fan', 'FAN18G3500' => 'fan', 'FAN28G2670' => 'fan', 'FvH4_1g12391' => 'fve', 'FvH4_4g23220' => 'fve', 'FvH4_5g08810' => 'fve', 'FvH4_5g28960' => 'fve', 'FvH4_6g42820' => 'fve', 'FvH4_6g51110' => 'fve', 'Glyma.02G051802' => 'gma', 'Glyma.04G185300' => 'gma', 'Glyma.05G202900' => 'gma', 'Glyma.08G010300' => 'gma', 'Glyma.16G131900' => 'gma', 'Glyma.17G087900' => 'gma', 'Gohir.A07G048600' => 'ghi', 'Gohir.A11G179000' => 'ghi', 'Gohir.A12G140900' => 'ghi', 'Gohir.A12G140950' => 'ghi', 'Gohir.A12G191700' => 'ghi', 'Gohir.A13G086300' => 'ghi', 'Gohir.D07G052900' => 'ghi', 'Gohir.D11G186600' => 'ghi', 'Gohir.D12G145575' => 'ghi', 'Gohir.D12G145650' => 'ghi', 'Gohir.D12G145725' => 'ghi', 'Gohir.D12G194050' => 'ghi', 'Gohir.D13G091800' => 'ghi', 'Gorai.001G055900' => 'gra', 'Gorai.007G198400' => 'gra', 'Gorai.008G157000' => 'gra', 'Gorai.008G157100' => 'gra', 'Gorai.008G208700' => 'gra', 'Gorai.010G138700' => 'gra', 'GSVIVG01000977001' => 'vvi', 'GSVIVG01007708001' => 'vvi', 'GSVIVG01008587001' => 'vvi', 'GSVIVG01018849001' => 'vvi', 'GSVIVG01032432001' => 'vvi', 'HanXRQChr02g0034131' => 'han', 'HanXRQChr02g0035981' => 'han', 'HanXRQChr02g0035991' => 'han', 'HanXRQChr05g0155611' => 'han', 'HanXRQChr05g0155621' => 'han', 'HanXRQChr08g0236501' => 'han', 'HanXRQChr09g0261321' => 'han', 'HanXRQChr09g0272081' => 'han', 'HanXRQChr10g0310741' => 'han', 'HanXRQChr11g0325591' => 'han', 'HanXRQChr12g0385691' => 'han', 'HanXRQChr13g0387801' => 'han', 'HanXRQChr15g0463011' => 'han', 'Haze_03826' => 'cav', 'Haze_03827' => 'cav', 'Haze_07183' => 'cav', 'Haze_07537' => 'cav', 'Haze_07539' => 'cav', 'Haze_12461' => 'cav', 'Haze_16115' => 'cav', 'Haze_16808' => 'cav', 'Haze_18531' => 'cav', 'Hma1.2p1_0046F.1_g026700' => 'hma', 'Hma1.2p1_0046F.1_g026710' => 'hma', 'Hma1.2p1_0168F.1_g074340' => 'hma', 'Hma1.2p1_0266F.1_g107030' => 'hma', 'Hma1.2p1_0266F.1_g107060' => 'hma', 'Hma1.2p1_0275F.1_g110510' => 'hma', 'Hma1.2p1_0592F.1_g185490' => 'hma', 'Hma1.2p1_0592F.1_g185500' => 'hma', 'Hma1.2p1_0592F.1_g185510' => 'hma', 'Hma1.2p1_0592F.1_g185520' => 'hma', 'Hma1.2p1_0592F.1_g185530' => 'hma', 'Hma1.2p1_0818F.1_g223450' => 'hma', 'HPP92_009708' => 'vpl', 'HPP92_009793' => 'vpl', 'HPP92_009796' => 'vpl', 'HPP92_009797' => 'vpl', 'HPP92_014940' => 'vpl', 'HPP92_014988' => 'vpl', 'Hund02463' => 'sun', 'Hund02760' => 'sun', 'Hund05071' => 'sun', 'Hund10108' => 'sun', 'Hund11204' => 'sun', 'Hund14016' => 'sun', 'Hund16464' => 'sun', 'Lalb_Chr09g0333391' => 'lal', 'Lalb_Chr11g0070461' => 'lal', 'Lalb_Chr12g0201671' => 'lal', 'Lalb_Chr13g0297161' => 'lal', 'Lj1g0002823' => 'lja', 'Lj3C1074T6' => 'lonja', 'Lj4A212T28' => 'lonja', 'Lj4g0005516' => 'lja', 'Lj4g0013705' => 'lja', 'Lj4g0027865' => 'lja', 'Lj5C92G16' => 'lonja', 'Lj5C92T12' => 'lonja', 'Lj7C596T3' => 'lonja', 'Lj9A446G59' => 'lonja', 'Lj9A482G21' => 'lonja', 'Lsat_1_v5_gn_1_28261' => 'lsa', 'Lsat_1_v5_gn_1_28281' => 'lsa', 'Lsat_1_v5_gn_1_32721' => 'lsa', 'Lsat_1_v5_gn_4_151760' => 'lsa', 'Lsat_1_v5_gn_4_2120' => 'lsa', 'Lsat_1_v5_gn_4_75761' => 'lsa', 'Lsat_1_v5_gn_5_10920' => 'lsa', 'Manes.02G099900' => 'mes', 'Manes.11G096200' => 'mes', 'Manes.12G007200' => 'mes', 'Manes.14G048300' => 'mes', 'Manes.17G114700' => 'mes', 'Mapoly0002s0070' => 'mpo', 'Mapoly0029s0099' => 'mpo', 'MBI07_g24742_MAGBIO' => 'mbi', 'MBI10_g27988_MAGBIO' => 'mbi', 'MBI11_g13057_MAGBIO' => 'mbi', 'MD02G1137200' => 'mdo', 'MD06G1137200' => 'mdo', 'MD07G1122300' => 'mdo', 'MD09G1078200' => 'mdo', 'MD13G1123700' => 'mdo', 'MD14G1151900' => 'mdo', 'MD17G1030900' => 'mdo', 'MD17G1068200' => 'mdo', 'MD17G1068600' => 'mdo', 'Medtr3g077540' => 'mtr', 'Medtr4g105530' => 'mtr', 'Medtr8g076580' => 'mtr', 'Medtr8g076590' => 'mtr', 'Medtr8g096410' => 'mtr', 'MELO3C016411.2' => 'cme', 'MELO3C017780.2' => 'cme', 'MELO3C022560.2' => 'cme', 'MELO3C026187.2' => 'cme', 'MELO3C026286.2' => 'cme', 'MELO3C032854.2' => 'cme', 'Migut.H02495' => 'egut', 'Migut.I00561' => 'egut', 'Migut.K01015' => 'egut', 'Migut.K01016' => 'egut', 'Migut.L00743' => 'egut', 'Migut.L00744' => 'egut', 'Migut.L00746' => 'egut', 'Migut.L00798' => 'egut', 'Migut.L00799' => 'egut', 'Migut.N02096' => 'egut', 'MSTRG.11259' => 'ama', 'MSTRG.23142' => 'ama', 'MSTRG.2499' => 'ama', 'Nitab4.5_0000003g0730' => 'nta', 'Nitab4.5_0000137g0020' => 'nta', 'Nitab4.5_0000721g0210' => 'nta', 'Nitab4.5_0000723g0050' => 'nta', 'Nitab4.5_0000913g0070' => 'nta', 'Nitab4.5_0001332g0040' => 'nta', 'Nitab4.5_0001771g0050' => 'nta', 'Nitab4.5_0001918g0050' => 'nta', 'Nitab4.5_0002686g0030' => 'nta', 'Nitab4.5_0003156g0020' => 'nta', 'Nitab4.5_0003383g0040' => 'nta', 'Nitab4.5_0003918g0010' => 'nta', 'Nitab4.5_0006760g0010' => 'nta', 'Nn1g05981' => 'nnu', 'Nn1g06288' => 'nnu', 'Nn3g16371' => 'nnu', 'Nn3g16786' => 'nnu', 'Nn4g22232' => 'nnu', 'Oeu005144.1' => 'oeu', 'Oeu005145.1' => 'oeu', 'Oeu011348.1' => 'oeu', 'Oeu016415.1' => 'oeu', 'Oeu023501.1' => 'oeu', 'Oeu044473.1' => 'oeu', 'Oeu048892.2' => 'oeu', 'Os01g0549200' => 'osa', 'Os02g0469300' => 'osa', 'Os04g0311100' => 'osa', 'Os06g0474900' => 'osa', 'Os10g0181700' => 'osa', 'Os11g0454800' => 'osa', 'Peaxi162Scf00037g00714' => 'pax', 'Peaxi162Scf00084g01217' => 'pax', 'Peaxi162Scf00257g00217' => 'pax', 'Peaxi162Scf00516g00215' => 'pax', 'Peaxi162Scf00689g00123' => 'pax', 'PGR044G2719' => 'pgr', 'PGR083G1360' => 'pgr', 'PGR102G2849' => 'pgr', 'PGR119G2534' => 'pgr', 'PGSC0003DMG400003538' => 'stu', 'PGSC0003DMG400028138' => 'stu', 'PGSC0003DMG400031732' => 'stu', 'PGSC0003DMG400038165' => 'stu', 'Phvul.002G284600' => 'pvu', 'Phvul.003G258200' => 'pvu', 'Phvul.009G176500' => 'pvu', 'Potri.003G167201' => 'ptr', 'Potri.005G118400' => 'ptr', 'Potri.012G089000' => 'ptr', 'Potri.012G102800' => 'ptr', 'Potri.015G079400' => 'ptr', 'Potri.015G100900' => 'ptr', 'Pp3c14_9810' => 'ppa', 'Pp3c15_10450' => 'ppa', 'Pp3c20_19150' => 'ppa', 'Pp3c23_12740' => 'ppa', 'Pp3c23_6310' => 'ppa', 'Pp3c24_3720' => 'ppa', 'Pp3c27_2580' => 'ppa', 'Pp3c9_8990' => 'ppa', 'PRCOL_00002854' => 'pco', 'Prupe.1G221200' => 'ppe', 'Prupe.3G289000' => 'ppe', 'Prupe.5G147000' => 'ppe', 'Prupe.6G157300' => 'ppe', 'Prupe.7G163400' => 'ppe', 'Psat0s2177g0040' => 'psa', 'Psat3g174760' => 'psa', 'Psat3g192160' => 'psa', 'Psat4g058520' => 'psa', 'Psat4g096840' => 'psa', 'Psat7g037320' => 'psa', 'PSO017G1274' => 'pso', 'PSO017G5166' => 'pso', 'PSO063G4558' => 'pso', 'PSO170G4458' => 'pso', 'PSO170G5005' => 'pso', 'PSO210G6156' => 'pso', 'PSO210G6635' => 'pso', 'PSO210G7397' => 'pso', 'PSO210G7700' => 'pso', 'PSO455G0035' => 'pso', 'PSO455G0180' => 'pso', 'PSO478G4515' => 'pso', 'PSO832G1305' => 'pso', 'PSO832G3489' => 'pso', 'QL02p075247' => 'qlo', 'QL03p051148' => 'qlo', 'QL05p010313' => 'qlo', 'QL06p034627' => 'qlo', 'QL10p001889' => 'qlo', 'QL10p010846' => 'qlo', 'RcHm_v2.0_Chr1g0350621' => 'rch', 'RcHm_v2.0_Chr1g0350641' => 'rch', 'RcHm_v2.0_Chr2g0092891' => 'rch', 'RcHm_v2.0_Chr2g0100251' => 'rch', 'RcHm_v2.0_Chr2g0158661' => 'rch', 'RcHm_v2.0_Chr2g0172741' => 'rch', 'RcHm_v2.0_Chr4g0429571' => 'rch', 'RcHm_v2.0_Chr5g0042471' => 'rch', 'RcHm_v2.0_Chr7g0189451' => 'rch', 'Rhsim08G0052000' => 'rsi', 'Rhsim08G0174400' => 'rsi', 'Rhsim08G0193200' => 'rsi', 'Rhsim10G0214800' => 'rsi', 'Rhsim10G0214900' => 'rsi', 'Rhsim10G0215000' => 'rsi', 'Rhsim12G0022900' => 'rsi', 'Rhsim12G0177500' => 'rsi', 'Rhsim12G0177700' => 'rsi', 'Sabra03G0122600' => 'sbr', 'Sabra05G0097400' => 'sbr', 'Sabra12G0064100' => 'sbr', 'Sabra15G0121300' => 'sbr', 'SalBow2G0642' => 'sbo', 'SalBow5G2667' => 'sbo', 'SalBow5G4873' => 'sbo', 'SalBow8G2395' => 'sbo', 'Sc03g0003290' => 'sci', 'Sc10g0010130' => 'sci', 'Sc22g0003650' => 'sci', 'Sed0001603' => 'sed', 'Sed0004259' => 'sed', 'Sed0006789' => 'sed', 'Sed0011838' => 'sed', 'Sed0012964' => 'sed', 'Sed0016383' => 'sed', 'Sed0019010' => 'sed', 'Sed0020188' => 'sed', 'SEGI_04702' => 'sgi', 'SEGI_17231' => 'sgi', 'SEGI_18877' => 'sgi', 'SEGI_25196' => 'sgi', 'SEGI_25515' => 'sgi', 'SEGI_28445' => 'sgi', 'SEGI_37452' => 'sgi', 'SGA_v2.0_scaffold188G40336' => 'sas', 'SGA_v2.0_scaffold228G43247' => 'sas', 'SGA_v2.0_scaffold280G46853' => 'sas', 'SGA_v2.0_scaffold34G13808' => 'sas', 'SGA_v2.0_scaffold40G15576' => 'sas', 'SGA_v2.0_scaffold611G53188' => 'sas', 'SGA_v2.0_scaffold78G25461' => 'sas', 'SGA_v2.0_scaffold90G27888' => 'sas', 'SHI08601' => 'shi', 'SHI08606' => 'shi', 'SHI17117' => 'shi', 'SHI17119' => 'shi', 'SMO118G0201' => 'smo', 'SMO169G0247' => 'smo', 'SMO176G0006' => 'smo', 'SMO176G0015' => 'smo', 'SMO202G0006' => 'smo', 'SMO240G0050' => 'smo', 'SMO286G0009' => 'smo', 'SMO338G0033' => 'smo', 'SMO356G0533' => 'smo', 'SMO364G0382' => 'smo', 'SMO367G0166' => 'smo', 'SMO367G1098' => 'smo', 'Solyc01g009920.3' => 'sly', 'Solyc01g099300.3' => 'sly', 'Solyc02g084700.3' => 'sly', 'Solyc03g097520.3' => 'sly', 'Solyc06g071580.3' => 'sly', 'Solyc10g081760.3' => 'sly', 'Sopen01g005480' => 'spe', 'Sopen01g042850' => 'spe', 'Sopen02g029370' => 'spe', 'Sopen03g028280' => 'spe', 'Sopen06g027870' => 'spe', 'Sopen10g032270' => 'spe', 'Sp5g18180' => 'spa', 'Sp6g12880' => 'spa', 'Sp6g30850' => 'spa', 'Sp7g22960' => 'spa', 'Sp7g34010' => 'spa', 'SpUn1326_0010' => 'spa', 'TAR371G0242' => 'tar', 'TAR622G0638' => 'tar', 'TAR628G1548' => 'tar', 'TAR629G1079' => 'tar', 'TAR629G3413' => 'tar', 'THA.LOC104804249' => 'tha', 'THA.LOC104808315' => 'tha', 'THA.LOC104809238' => 'tha', 'THA.LOC104825484' => 'tha', 'Thecc.01G025500' => 'tca', 'Thecc.03G015800' => 'tca', 'Thecc.03G018000' => 'tca', 'Thecc.03G134800' => 'tca', 'Thecc.04G014700' => 'tca', 'Thhalv10006991m.g' => 'esa', 'Thhalv10012707m.g' => 'esa', 'Thhalv10015739m.g' => 'esa', 'Thhalv10024553m.g' => 'esa', 'Thhalv10024673m.g' => 'esa', 'Thhalv10029187m.g' => 'esa', 'TPR.G12971' => 'tpr', 'TPR.G29396' => 'tpr', 'TPR.G33376' => 'tpr', 'TPR.G35508' => 'tpr', 'TPR.G35516' => 'tpr', 'TPR.G37317' => 'tpr', 'TPR.G37389' => 'tpr', 'TPR.G37523' => 'tpr', 'TPR.G559' => 'tpr', 'TWI14G0070' => 'twi', 'TWI14G0729' => 'twi', 'TWI18G0596' => 'twi', 'TWI39G0780' => 'twi', 'TWI39G0850' => 'twi', 'TWI73G1052' => 'twi', 'unitig_52.g17485' => 'ugi', 'unitig_61.g26355' => 'ugi', 'vmacro01040' => 'vma', 'vmacro16731' => 'vma', 'vmacro18270' => 'vma', 'vmacro19142' => 'vma', 'vmacro19407' => 'vma', 'vmacro19408' => 'vma', 'vmacro21899' => 'vma', 'vmacro21900' => 'vma', 'vmacro21901' => 'vma', 'VMungo0251G0490' => 'vmu', 'VMungo0251G1748' => 'vmu', 'VMungo1309G0421' => 'vmu', 'Zm00001eb086500' => 'zma', 'Zm00001eb150680' => 'zma', 'Zm00001eb162330' => 'zma', 'Zm00001eb203130' => 'zma', 'Zm00001eb369480' => 'zma', 'Zm00001eb382340' => 'zma', 'Zm00001eb416360' => 'zma' ) $gf_id = 'HOM05D000902' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000902' ) $data_identifier = 'HOM05D000902' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 13, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 10, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 6, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 9, 'hma' => (int) 12, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 4, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 6, 'ppa' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 6, 'rch' => (int) 9, 'rsi' => (int) 9, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 12, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 3, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416360' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000902', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '663', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02470' => 'bna', 'A01p16260' => 'bna', 'A02p01680' => 'bna', 'A03p16600' => 'bna', 'A03p55660' => 'bna', 'A03p64160' => 'bna', 'A03p64170' => 'bna', 'A08p31900' => 'bna', 'A09p59530' => 'bna', 'A10p08230' => 'bna', 'A10p25090' => 'bna', 'Aa31LG3G7100' => 'aar', 'Aa31LG3G7110' => 'aar', 'Aa31LG6G13160' => 'aar', 'Aa31LG7G10770' => 'aar', 'Aa31LG7G3830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2723' => 'aag', 'Actinidia08045' => 'ach', 'Actinidia08888' => 'ach', 'Actinidia18333' => 'ach', 'Actinidia19334' => 'ach', 'Actinidia25552' => 'ach', 'Actinidia26089' => 'ach', 'Actinidia30615' => 'ach', 'Actinidia30616' => 'ach', 'Actinidia33083' => 'ach', 'Actinidia35762' => 'ach', 'Ah.02g110620' => 'amhyb', 'Ah.11g046390' => 'amhyb', 'AL1G31670' => 'aly', 'AL6G23730' => 'aly', 'AL7G14740' => 'aly', 'AL7G14750' => 'aly', 'AL7G14760' => 'aly', 'AL7G28220' => 'aly', 'AL8G24940' => 'aly', 'Aqoxy3G01665' => 'aox', 'Aqoxy3G02853' => 'aox', 'Aqoxy5G01513' => 'aox', 'Aqoxy5G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8SKA4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ75LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKDA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0LJZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7REX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZP4YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWX7I5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2QKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS0L9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPCD8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q161UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC7XCF' => 'arhy', 'AT1G19100' => 'ath', 'AT4G24970' => 'ath', 'AT4G36270' => 'ath', 'AT4G36280' => 'ath', 'AT4G36290' => 'ath', 'AT5G13130' => 'ath', 'AT5G50780' => 'ath', 'ATR0582G266' => 'atr', 'ATR0661G195' => 'atr', 'ATR1152G031' => 'atr', 'Atru.chr11.2382' => 'acertr', 'Atru.chr12.2337' => 'acertr', 'Atru.chr3.744' => 'acertr', 'Atru.chr6.1870' => 'acertr', 'Atru.chr9.2515' => 'acertr', 'AUR62004120' => 'cqu', 'AUR62005667' => 'cqu', 'AUR62007634' => 'cqu', 'AUR62008186' => 'cqu', 'AUR62008187' => 'cqu', 'AUR62008188' => 'cqu', 'AUR62027954' => 'cqu', 'AUR62028766' => 'cqu', 'AUR62028767' => 'cqu', 'AUR62028768' => 'cqu', 'AUR62028886' => 'cqu', 'AUR62029563' => 'cqu', 'AUR62038832' => 'cqu', 'BcaB01g04149' => 'bca', 'BcaB03g12940' => 'bca', 'BcaB03g13090' => 'bca', 'BcaB03g14466' => 'bca', 'BcaB05g24035' => 'bca', 'BcaC01g06050' => 'bca', 'BcaC04g19148' => 'bca', 'BcaC04g20761' => 'bca', 'BcaC06g32845' => 'bca', 'BcaC07g41274' => 'bca', 'BcaC09g50827' => 'bca', 'BcaNung00741' => 'bca', 'BcaNung00742' => 'bca', 'BcaNung01859' => 'bca', 'BcaNung03985' => 'bca', 'BcaNung03989' => 'bca', 'BcaNung05661' => 'bca', 'BolC1t00257H' => 'bol', 'BolC1t01956H' => 'bol', 'BolC2t06534H' => 'bol', 'BolC3t14334H' => 'bol', 'BolC5t30451H' => 'bol', 'BolC7t45880H' => 'bol', 'BolC7t46586H' => 'bol', 'BolC8t49301H' => 'bol', 'BolC8t51837H' => 'bol', 'BolC9t56822H' => 'bol', 'BolC9t59235H' => 'bol', 'BraA01t00234Z' => 'bra', 'BraA01t01563Z' => 'bra', 'BraA02t05147Z' => 'bra', 'BraA03t10947Z' => 'bra', 'BraA03t14633Z' => 'bra', 'BraA08t35112Z' => 'bra', 'BraA09t41330Z' => 'bra', 'BraA10t44570Z' => 'bra', 'C01p02670' => 'bna', 'C01p20260' => 'bna', 'C02p05890' => 'bna', 'C03p19530' => 'bna', 'C05p17470' => 'bna', 'C07p53900' => 'bna', 'C07p61630' => 'bna', 'C08p16800' => 'bna', 'C08p42810' => 'bna', 'C09p39480' => 'bna', 'C09p63980' => 'bna', 'CAN.G1001.7' => 'can', 'CAN.G1034.55' => 'can', 'CAN.G143.7' => 'can', 'CAN.G3340.1' => 'can', 'CAN.G358.19' => 'can', 'CAN.G373.2' => 'can', 'CAN.G674.16' => 'can', 'CAN.G674.17' => 'can', 'CAN.G674.18' => 'can', 'CAN.G732.2' => 'can', 'CAN.G732.3' => 'can', 'CAN.G993.39' => 'can', 'CANSAT01G2052' => 'cansat', 'CANSAT80G0070' => 'cansat', 'CANSAT80G0483' => 'cansat', 'CANSAT80G0625' => 'cansat', 'CARHR019690' => 'chi', 'CARHR080280' => 'chi', 'CARHR152750' => 'chi', 'CARHR152760' => 'chi', 'CARHR152770' => 'chi', 'CARHR200340' => 'chi', 'CARHR232370' => 'chi', 'CARHR244670' => 'chi', 'CARHR244680' => 'chi', 'CARHR257520' => 'chi', 'Carub.0001s1872' => 'cru', 'Carub.0006s1130' => 'cru', 'Carub.0007s0396' => 'cru', 'Carub.0007s0397' => 'cru', 'Carub.0007s1608' => 'cru', 'Carub.0008s1068' => 'cru', 'Carub.0008s1077' => 'cru', 'Ca_16158_v3' => 'car', 'Ca_17571_v3' => 'car', 'Ca_21936_v3' => 'car', 'Ca_22350_v3' => 'car', 'CBR_g22445' => 'cbr', 'CBR_g26290' => 'cbr', 'Cc04_g09610' => 'ccan', 'Cc04_g12280' => 'ccan', 'Cc07_g10230' => 'ccan', 'CDE02G0093' => 'cde', 'CDE02G0701' => 'cde', 'CDE04G1050' => 'cde', 'CDE05G1833' => 'cde', 'CDE05G3058' => 'cde', 'CDE05G3380' => 'cde', 'CDE06G0536' => 'cde', 'Cfa006923' => 'cfa', 'Cfa009402' => 'cfa', 'Cfa018751' => 'cfa', 'Cfa019164' => 'cfa', 'Cfa022935' => 'cfa', 'Ciclev10019081m.g' => 'ccl', 'Ciclev10025076m.g' => 'ccl', 'Ciclev10030712m.g' => 'ccl', 'Ciclev10033760m.g' => 'ccl', 'CiPaw.05G105600' => 'cil', 'CiPaw.08G136700' => 'cil', 'CiPaw.11G003900' => 'cil', 'CiPaw.11G023700' => 'cil', 'CiPaw.12G003700' => 'cil', 'ClCG06G017100' => 'cla', 'ClCG06G018110' => 'cla', 'ClCG07G008800' => 'cla', 'ClCG07G015330' => 'cla', 'COL.COLO4_13698' => 'col', 'COL.COLO4_16659' => 'col', 'COL.COLO4_21986' => 'col', 'COL.COLO4_24049' => 'col', 'COL.COLO4_29061' => 'col', 'COL.COLO4_29075' => 'col', 'COL.COLO4_30094' => 'col', 'Cpa.g.c33689' => 'cpa', 'Cpa.g.sc108.39' => 'cpa', 'Cpa.g.sc108.41' => 'cpa', 'Cpa.g.sc1163.1' => 'cpa', 'Cpa.g.sc4.155' => 'cpa', 'Cpa.g.sc6.194' => 'cpa', 'CsaV3_1G000340' => 'csa', 'CsaV3_1G001400' => 'csa', 'CsaV3_4G002220' => 'csa', 'CsaV3_4G005370' => 'csa', 'CSS0007487' => 'camsi', 'CSS0008066' => 'camsi', 'CSS0009120' => 'camsi', 'CSS0015512' => 'camsi', 'CSS0022409' => 'camsi', 'CSS0025358' => 'camsi', 'CSS0044547' => 'camsi', 'DCAR_013057' => 'dca', 'DCAR_015058' => 'dca', 'DCAR_016027' => 'dca', 'DCAR_017327' => 'dca', 'DCAR_020743' => 'dca', 'DCAR_026157' => 'dca', 'DCAR_032339' => 'dca', 'DCAR_032340' => 'dca', 'Dinv11200' => 'din', 'Dinv11201' => 'din', 'Dinv20631' => 'din', 'Dinv23182' => 'din', 'Dinv33466' => 'din', 'Dinv33583' => 'din', 'Dinv38565' => 'din', 'Duzib068G0200' => 'dzi', 'Duzib147G0132' => 'dzi', 'Duzib147G0635' => 'dzi', 'Duzib205G1670' => 'dzi', 'Duzib251G0606' => 'dzi', 'ECA232G3336' => 'eca', 'ECA232G3763' => 'eca', 'ECA232G4845' => 'eca', 'ECA234G1607' => 'eca', 'ECA246G0932' => 'eca', 'ECA247G0781' => 'eca', 'ECA247G1932' => 'eca', 'ECA247G2079' => 'eca', 'ECA247G3338' => 'eca', 'ECA247G4115' => 'eca', 'EL10Ac3g06552' => 'bvu', 'EL10Ac5g10721' => 'bvu', 'EL10Ac5g10722' => 'bvu', 'EL10Ac5g10723' => 'bvu', 'EL10Ac5g11361' => 'bvu', 'EL10Ac6g13553' => 'bvu', 'EL10As8g23872' => 'bvu', 'Eucgr.B00250' => 'egr', 'Eucgr.B00251' => 'egr', 'Eucgr.B03533' => 'egr', 'Eucgr.I02381' => 'egr', 'Eucgr.K02700' => 'egr', 'FAN02G0174' => 'fan', 'FAN02G3146' => 'fan', 'FAN04G1672' => 'fan', 'FAN04G2273' => 'fan', 'FAN05G2791' => 'fan', 'FAN05G4035' => 'fan', 'FAN07G0834' => 'fan', 'FAN08G1198' => 'fan', 'FAN09G4182' => 'fan', 'FAN12G0496' => 'fan', 'FAN13G1027' => 'fan', 'FAN13G2951' => 'fan', 'FAN14G0705' => 'fan', 'FAN14G0720' => 'fan', 'FAN17G0201' => 'fan', 'FAN17G2665' => 'fan', 'FAN18G1456' => 'fan', 'FAN18G1525' => 'fan', 'FAN18G3500' => 'fan', 'FAN28G2670' => 'fan', 'FvH4_1g12391' => 'fve', 'FvH4_4g23220' => 'fve', 'FvH4_5g08810' => 'fve', 'FvH4_5g28960' => 'fve', 'FvH4_6g42820' => 'fve', 'FvH4_6g51110' => 'fve', 'Glyma.02G051802' => 'gma', 'Glyma.04G185300' => 'gma', 'Glyma.05G202900' => 'gma', 'Glyma.08G010300' => 'gma', 'Glyma.16G131900' => 'gma', 'Glyma.17G087900' => 'gma', 'Gohir.A07G048600' => 'ghi', 'Gohir.A11G179000' => 'ghi', 'Gohir.A12G140900' => 'ghi', 'Gohir.A12G140950' => 'ghi', 'Gohir.A12G191700' => 'ghi', 'Gohir.A13G086300' => 'ghi', 'Gohir.D07G052900' => 'ghi', 'Gohir.D11G186600' => 'ghi', 'Gohir.D12G145575' => 'ghi', 'Gohir.D12G145650' => 'ghi', 'Gohir.D12G145725' => 'ghi', 'Gohir.D12G194050' => 'ghi', 'Gohir.D13G091800' => 'ghi', 'Gorai.001G055900' => 'gra', 'Gorai.007G198400' => 'gra', 'Gorai.008G157000' => 'gra', 'Gorai.008G157100' => 'gra', 'Gorai.008G208700' => 'gra', 'Gorai.010G138700' => 'gra', 'GSVIVG01000977001' => 'vvi', 'GSVIVG01007708001' => 'vvi', 'GSVIVG01008587001' => 'vvi', 'GSVIVG01018849001' => 'vvi', 'GSVIVG01032432001' => 'vvi', 'HanXRQChr02g0034131' => 'han', 'HanXRQChr02g0035981' => 'han', 'HanXRQChr02g0035991' => 'han', 'HanXRQChr05g0155611' => 'han', 'HanXRQChr05g0155621' => 'han', 'HanXRQChr08g0236501' => 'han', 'HanXRQChr09g0261321' => 'han', 'HanXRQChr09g0272081' => 'han', 'HanXRQChr10g0310741' => 'han', 'HanXRQChr11g0325591' => 'han', 'HanXRQChr12g0385691' => 'han', 'HanXRQChr13g0387801' => 'han', 'HanXRQChr15g0463011' => 'han', 'Haze_03826' => 'cav', 'Haze_03827' => 'cav', 'Haze_07183' => 'cav', 'Haze_07537' => 'cav', 'Haze_07539' => 'cav', 'Haze_12461' => 'cav', 'Haze_16115' => 'cav', 'Haze_16808' => 'cav', 'Haze_18531' => 'cav', 'Hma1.2p1_0046F.1_g026700' => 'hma', 'Hma1.2p1_0046F.1_g026710' => 'hma', 'Hma1.2p1_0168F.1_g074340' => 'hma', 'Hma1.2p1_0266F.1_g107030' => 'hma', 'Hma1.2p1_0266F.1_g107060' => 'hma', 'Hma1.2p1_0275F.1_g110510' => 'hma', 'Hma1.2p1_0592F.1_g185490' => 'hma', 'Hma1.2p1_0592F.1_g185500' => 'hma', 'Hma1.2p1_0592F.1_g185510' => 'hma', 'Hma1.2p1_0592F.1_g185520' => 'hma', 'Hma1.2p1_0592F.1_g185530' => 'hma', 'Hma1.2p1_0818F.1_g223450' => 'hma', 'HPP92_009708' => 'vpl', 'HPP92_009793' => 'vpl', 'HPP92_009796' => 'vpl', 'HPP92_009797' => 'vpl', 'HPP92_014940' => 'vpl', 'HPP92_014988' => 'vpl', 'Hund02463' => 'sun', 'Hund02760' => 'sun', 'Hund05071' => 'sun', 'Hund10108' => 'sun', 'Hund11204' => 'sun', 'Hund14016' => 'sun', 'Hund16464' => 'sun', 'Lalb_Chr09g0333391' => 'lal', 'Lalb_Chr11g0070461' => 'lal', 'Lalb_Chr12g0201671' => 'lal', 'Lalb_Chr13g0297161' => 'lal', 'Lj1g0002823' => 'lja', 'Lj3C1074T6' => 'lonja', 'Lj4A212T28' => 'lonja', 'Lj4g0005516' => 'lja', 'Lj4g0013705' => 'lja', 'Lj4g0027865' => 'lja', 'Lj5C92G16' => 'lonja', 'Lj5C92T12' => 'lonja', 'Lj7C596T3' => 'lonja', 'Lj9A446G59' => 'lonja', 'Lj9A482G21' => 'lonja', 'Lsat_1_v5_gn_1_28261' => 'lsa', 'Lsat_1_v5_gn_1_28281' => 'lsa', 'Lsat_1_v5_gn_1_32721' => 'lsa', 'Lsat_1_v5_gn_4_151760' => 'lsa', 'Lsat_1_v5_gn_4_2120' => 'lsa', 'Lsat_1_v5_gn_4_75761' => 'lsa', 'Lsat_1_v5_gn_5_10920' => 'lsa', 'Manes.02G099900' => 'mes', 'Manes.11G096200' => 'mes', 'Manes.12G007200' => 'mes', 'Manes.14G048300' => 'mes', 'Manes.17G114700' => 'mes', 'Mapoly0002s0070' => 'mpo', 'Mapoly0029s0099' => 'mpo', 'MBI07_g24742_MAGBIO' => 'mbi', 'MBI10_g27988_MAGBIO' => 'mbi', 'MBI11_g13057_MAGBIO' => 'mbi', 'MD02G1137200' => 'mdo', 'MD06G1137200' => 'mdo', 'MD07G1122300' => 'mdo', 'MD09G1078200' => 'mdo', 'MD13G1123700' => 'mdo', 'MD14G1151900' => 'mdo', 'MD17G1030900' => 'mdo', 'MD17G1068200' => 'mdo', 'MD17G1068600' => 'mdo', 'Medtr3g077540' => 'mtr', 'Medtr4g105530' => 'mtr', 'Medtr8g076580' => 'mtr', 'Medtr8g076590' => 'mtr', 'Medtr8g096410' => 'mtr', 'MELO3C016411.2' => 'cme', 'MELO3C017780.2' => 'cme', 'MELO3C022560.2' => 'cme', 'MELO3C026187.2' => 'cme', 'MELO3C026286.2' => 'cme', 'MELO3C032854.2' => 'cme', 'Migut.H02495' => 'egut', 'Migut.I00561' => 'egut', 'Migut.K01015' => 'egut', 'Migut.K01016' => 'egut', 'Migut.L00743' => 'egut', 'Migut.L00744' => 'egut', 'Migut.L00746' => 'egut', 'Migut.L00798' => 'egut', 'Migut.L00799' => 'egut', 'Migut.N02096' => 'egut', 'MSTRG.11259' => 'ama', 'MSTRG.23142' => 'ama', 'MSTRG.2499' => 'ama', 'Nitab4.5_0000003g0730' => 'nta', 'Nitab4.5_0000137g0020' => 'nta', 'Nitab4.5_0000721g0210' => 'nta', 'Nitab4.5_0000723g0050' => 'nta', 'Nitab4.5_0000913g0070' => 'nta', 'Nitab4.5_0001332g0040' => 'nta', 'Nitab4.5_0001771g0050' => 'nta', 'Nitab4.5_0001918g0050' => 'nta', 'Nitab4.5_0002686g0030' => 'nta', 'Nitab4.5_0003156g0020' => 'nta', 'Nitab4.5_0003383g0040' => 'nta', 'Nitab4.5_0003918g0010' => 'nta', 'Nitab4.5_0006760g0010' => 'nta', 'Nn1g05981' => 'nnu', 'Nn1g06288' => 'nnu', 'Nn3g16371' => 'nnu', 'Nn3g16786' => 'nnu', 'Nn4g22232' => 'nnu', 'Oeu005144.1' => 'oeu', 'Oeu005145.1' => 'oeu', 'Oeu011348.1' => 'oeu', 'Oeu016415.1' => 'oeu', 'Oeu023501.1' => 'oeu', 'Oeu044473.1' => 'oeu', 'Oeu048892.2' => 'oeu', 'Os01g0549200' => 'osa', 'Os02g0469300' => 'osa', 'Os04g0311100' => 'osa', 'Os06g0474900' => 'osa', 'Os10g0181700' => 'osa', 'Os11g0454800' => 'osa', 'Peaxi162Scf00037g00714' => 'pax', 'Peaxi162Scf00084g01217' => 'pax', 'Peaxi162Scf00257g00217' => 'pax', 'Peaxi162Scf00516g00215' => 'pax', 'Peaxi162Scf00689g00123' => 'pax', 'PGR044G2719' => 'pgr', 'PGR083G1360' => 'pgr', 'PGR102G2849' => 'pgr', 'PGR119G2534' => 'pgr', 'PGSC0003DMG400003538' => 'stu', 'PGSC0003DMG400028138' => 'stu', 'PGSC0003DMG400031732' => 'stu', 'PGSC0003DMG400038165' => 'stu', 'Phvul.002G284600' => 'pvu', 'Phvul.003G258200' => 'pvu', 'Phvul.009G176500' => 'pvu', 'Potri.003G167201' => 'ptr', 'Potri.005G118400' => 'ptr', 'Potri.012G089000' => 'ptr', 'Potri.012G102800' => 'ptr', 'Potri.015G079400' => 'ptr', 'Potri.015G100900' => 'ptr', 'Pp3c14_9810' => 'ppa', 'Pp3c15_10450' => 'ppa', 'Pp3c20_19150' => 'ppa', 'Pp3c23_12740' => 'ppa', 'Pp3c23_6310' => 'ppa', 'Pp3c24_3720' => 'ppa', 'Pp3c27_2580' => 'ppa', 'Pp3c9_8990' => 'ppa', 'PRCOL_00002854' => 'pco', 'Prupe.1G221200' => 'ppe', 'Prupe.3G289000' => 'ppe', 'Prupe.5G147000' => 'ppe', 'Prupe.6G157300' => 'ppe', 'Prupe.7G163400' => 'ppe', 'Psat0s2177g0040' => 'psa', 'Psat3g174760' => 'psa', 'Psat3g192160' => 'psa', 'Psat4g058520' => 'psa', 'Psat4g096840' => 'psa', 'Psat7g037320' => 'psa', 'PSO017G1274' => 'pso', 'PSO017G5166' => 'pso', 'PSO063G4558' => 'pso', 'PSO170G4458' => 'pso', 'PSO170G5005' => 'pso', 'PSO210G6156' => 'pso', 'PSO210G6635' => 'pso', 'PSO210G7397' => 'pso', 'PSO210G7700' => 'pso', 'PSO455G0035' => 'pso', 'PSO455G0180' => 'pso', 'PSO478G4515' => 'pso', 'PSO832G1305' => 'pso', 'PSO832G3489' => 'pso', 'QL02p075247' => 'qlo', 'QL03p051148' => 'qlo', 'QL05p010313' => 'qlo', 'QL06p034627' => 'qlo', 'QL10p001889' => 'qlo', 'QL10p010846' => 'qlo', 'RcHm_v2.0_Chr1g0350621' => 'rch', 'RcHm_v2.0_Chr1g0350641' => 'rch', 'RcHm_v2.0_Chr2g0092891' => 'rch', 'RcHm_v2.0_Chr2g0100251' => 'rch', 'RcHm_v2.0_Chr2g0158661' => 'rch', 'RcHm_v2.0_Chr2g0172741' => 'rch', 'RcHm_v2.0_Chr4g0429571' => 'rch', 'RcHm_v2.0_Chr5g0042471' => 'rch', 'RcHm_v2.0_Chr7g0189451' => 'rch', 'Rhsim08G0052000' => 'rsi', 'Rhsim08G0174400' => 'rsi', 'Rhsim08G0193200' => 'rsi', 'Rhsim10G0214800' => 'rsi', 'Rhsim10G0214900' => 'rsi', 'Rhsim10G0215000' => 'rsi', 'Rhsim12G0022900' => 'rsi', 'Rhsim12G0177500' => 'rsi', 'Rhsim12G0177700' => 'rsi', 'Sabra03G0122600' => 'sbr', 'Sabra05G0097400' => 'sbr', 'Sabra12G0064100' => 'sbr', 'Sabra15G0121300' => 'sbr', 'SalBow2G0642' => 'sbo', 'SalBow5G2667' => 'sbo', 'SalBow5G4873' => 'sbo', 'SalBow8G2395' => 'sbo', 'Sc03g0003290' => 'sci', 'Sc10g0010130' => 'sci', 'Sc22g0003650' => 'sci', 'Sed0001603' => 'sed', 'Sed0004259' => 'sed', 'Sed0006789' => 'sed', 'Sed0011838' => 'sed', 'Sed0012964' => 'sed', 'Sed0016383' => 'sed', 'Sed0019010' => 'sed', 'Sed0020188' => 'sed', 'SEGI_04702' => 'sgi', 'SEGI_17231' => 'sgi', 'SEGI_18877' => 'sgi', 'SEGI_25196' => 'sgi', 'SEGI_25515' => 'sgi', 'SEGI_28445' => 'sgi', 'SEGI_37452' => 'sgi', 'SGA_v2.0_scaffold188G40336' => 'sas', 'SGA_v2.0_scaffold228G43247' => 'sas', 'SGA_v2.0_scaffold280G46853' => 'sas', 'SGA_v2.0_scaffold34G13808' => 'sas', 'SGA_v2.0_scaffold40G15576' => 'sas', 'SGA_v2.0_scaffold611G53188' => 'sas', 'SGA_v2.0_scaffold78G25461' => 'sas', 'SGA_v2.0_scaffold90G27888' => 'sas', 'SHI08601' => 'shi', 'SHI08606' => 'shi', 'SHI17117' => 'shi', 'SHI17119' => 'shi', 'SMO118G0201' => 'smo', 'SMO169G0247' => 'smo', 'SMO176G0006' => 'smo', 'SMO176G0015' => 'smo', 'SMO202G0006' => 'smo', 'SMO240G0050' => 'smo', 'SMO286G0009' => 'smo', 'SMO338G0033' => 'smo', 'SMO356G0533' => 'smo', 'SMO364G0382' => 'smo', 'SMO367G0166' => 'smo', 'SMO367G1098' => 'smo', 'Solyc01g009920.3' => 'sly', 'Solyc01g099300.3' => 'sly', 'Solyc02g084700.3' => 'sly', 'Solyc03g097520.3' => 'sly', 'Solyc06g071580.3' => 'sly', 'Solyc10g081760.3' => 'sly', 'Sopen01g005480' => 'spe', 'Sopen01g042850' => 'spe', 'Sopen02g029370' => 'spe', 'Sopen03g028280' => 'spe', 'Sopen06g027870' => 'spe', 'Sopen10g032270' => 'spe', 'Sp5g18180' => 'spa', 'Sp6g12880' => 'spa', 'Sp6g30850' => 'spa', 'Sp7g22960' => 'spa', 'Sp7g34010' => 'spa', 'SpUn1326_0010' => 'spa', 'TAR371G0242' => 'tar', 'TAR622G0638' => 'tar', 'TAR628G1548' => 'tar', 'TAR629G1079' => 'tar', 'TAR629G3413' => 'tar', 'THA.LOC104804249' => 'tha', 'THA.LOC104808315' => 'tha', 'THA.LOC104809238' => 'tha', 'THA.LOC104825484' => 'tha', 'Thecc.01G025500' => 'tca', 'Thecc.03G015800' => 'tca', 'Thecc.03G018000' => 'tca', 'Thecc.03G134800' => 'tca', 'Thecc.04G014700' => 'tca', 'Thhalv10006991m.g' => 'esa', 'Thhalv10012707m.g' => 'esa', 'Thhalv10015739m.g' => 'esa', 'Thhalv10024553m.g' => 'esa', 'Thhalv10024673m.g' => 'esa', 'Thhalv10029187m.g' => 'esa', 'TPR.G12971' => 'tpr', 'TPR.G29396' => 'tpr', 'TPR.G33376' => 'tpr', 'TPR.G35508' => 'tpr', 'TPR.G35516' => 'tpr', 'TPR.G37317' => 'tpr', 'TPR.G37389' => 'tpr', 'TPR.G37523' => 'tpr', 'TPR.G559' => 'tpr', 'TWI14G0070' => 'twi', 'TWI14G0729' => 'twi', 'TWI18G0596' => 'twi', 'TWI39G0780' => 'twi', 'TWI39G0850' => 'twi', 'TWI73G1052' => 'twi', 'unitig_52.g17485' => 'ugi', 'unitig_61.g26355' => 'ugi', 'vmacro01040' => 'vma', 'vmacro16731' => 'vma', 'vmacro18270' => 'vma', 'vmacro19142' => 'vma', 'vmacro19407' => 'vma', 'vmacro19408' => 'vma', 'vmacro21899' => 'vma', 'vmacro21900' => 'vma', 'vmacro21901' => 'vma', 'VMungo0251G0490' => 'vmu', 'VMungo0251G1748' => 'vmu', 'VMungo1309G0421' => 'vmu', 'Zm00001eb086500' => 'zma', 'Zm00001eb150680' => 'zma', 'Zm00001eb162330' => 'zma', 'Zm00001eb203130' => 'zma', 'Zm00001eb369480' => 'zma', 'Zm00001eb382340' => 'zma', 'Zm00001eb416360' => 'zma' ), 'gf_id' => 'HOM05D000902', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000902' ), 'data_identifier' => 'HOM05D000902', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000902', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '663', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02470' => 'bna', 'A01p16260' => 'bna', 'A02p01680' => 'bna', 'A03p16600' => 'bna', 'A03p55660' => 'bna', 'A03p64160' => 'bna', 'A03p64170' => 'bna', 'A08p31900' => 'bna', 'A09p59530' => 'bna', 'A10p08230' => 'bna', 'A10p25090' => 'bna', 'Aa31LG3G7100' => 'aar', 'Aa31LG3G7110' => 'aar', 'Aa31LG6G13160' => 'aar', 'Aa31LG7G10770' => 'aar', 'Aa31LG7G3830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2723' => 'aag', 'Actinidia08045' => 'ach', 'Actinidia08888' => 'ach', 'Actinidia18333' => 'ach', 'Actinidia19334' => 'ach', 'Actinidia25552' => 'ach', 'Actinidia26089' => 'ach', 'Actinidia30615' => 'ach', 'Actinidia30616' => 'ach', 'Actinidia33083' => 'ach', 'Actinidia35762' => 'ach', 'Ah.02g110620' => 'amhyb', 'Ah.11g046390' => 'amhyb', 'AL1G31670' => 'aly', 'AL6G23730' => 'aly', 'AL7G14740' => 'aly', 'AL7G14750' => 'aly', 'AL7G14760' => 'aly', 'AL7G28220' => 'aly', 'AL8G24940' => 'aly', 'Aqoxy3G01665' => 'aox', 'Aqoxy3G02853' => 'aox', 'Aqoxy5G01513' => 'aox', 'Aqoxy5G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8SKA4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ75LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKDA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0LJZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7REX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZP4YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWX7I5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2QKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS0L9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPCD8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q161UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC7XCF' => 'arhy', 'AT1G19100' => 'ath', 'AT4G24970' => 'ath', 'AT4G36270' => 'ath', 'AT4G36280' => 'ath', 'AT4G36290' => 'ath', 'AT5G13130' => 'ath', 'AT5G50780' => 'ath', 'ATR0582G266' => 'atr', 'ATR0661G195' => 'atr', 'ATR1152G031' => 'atr', 'Atru.chr11.2382' => 'acertr', 'Atru.chr12.2337' => 'acertr', 'Atru.chr3.744' => 'acertr', 'Atru.chr6.1870' => 'acertr', 'Atru.chr9.2515' => 'acertr', 'AUR62004120' => 'cqu', 'AUR62005667' => 'cqu', 'AUR62007634' => 'cqu', 'AUR62008186' => 'cqu', 'AUR62008187' => 'cqu', 'AUR62008188' => 'cqu', 'AUR62027954' => 'cqu', 'AUR62028766' => 'cqu', 'AUR62028767' => 'cqu', 'AUR62028768' => 'cqu', 'AUR62028886' => 'cqu', 'AUR62029563' => 'cqu', 'AUR62038832' => 'cqu', 'BcaB01g04149' => 'bca', 'BcaB03g12940' => 'bca', 'BcaB03g13090' => 'bca', 'BcaB03g14466' => 'bca', 'BcaB05g24035' => 'bca', 'BcaC01g06050' => 'bca', 'BcaC04g19148' => 'bca', 'BcaC04g20761' => 'bca', 'BcaC06g32845' => 'bca', 'BcaC07g41274' => 'bca', 'BcaC09g50827' => 'bca', 'BcaNung00741' => 'bca', 'BcaNung00742' => 'bca', 'BcaNung01859' => 'bca', 'BcaNung03985' => 'bca', 'BcaNung03989' => 'bca', 'BcaNung05661' => 'bca', 'BolC1t00257H' => 'bol', 'BolC1t01956H' => 'bol', 'BolC2t06534H' => 'bol', 'BolC3t14334H' => 'bol', 'BolC5t30451H' => 'bol', 'BolC7t45880H' => 'bol', 'BolC7t46586H' => 'bol', 'BolC8t49301H' => 'bol', 'BolC8t51837H' => 'bol', 'BolC9t56822H' => 'bol', 'BolC9t59235H' => 'bol', 'BraA01t00234Z' => 'bra', 'BraA01t01563Z' => 'bra', 'BraA02t05147Z' => 'bra', 'BraA03t10947Z' => 'bra', 'BraA03t14633Z' => 'bra', 'BraA08t35112Z' => 'bra', 'BraA09t41330Z' => 'bra', 'BraA10t44570Z' => 'bra', 'C01p02670' => 'bna', 'C01p20260' => 'bna', 'C02p05890' => 'bna', 'C03p19530' => 'bna', 'C05p17470' => 'bna', 'C07p53900' => 'bna', 'C07p61630' => 'bna', 'C08p16800' => 'bna', 'C08p42810' => 'bna', 'C09p39480' => 'bna', 'C09p63980' => 'bna', 'CAN.G1001.7' => 'can', 'CAN.G1034.55' => 'can', 'CAN.G143.7' => 'can', 'CAN.G3340.1' => 'can', 'CAN.G358.19' => 'can', 'CAN.G373.2' => 'can', 'CAN.G674.16' => 'can', 'CAN.G674.17' => 'can', 'CAN.G674.18' => 'can', 'CAN.G732.2' => 'can', 'CAN.G732.3' => 'can', 'CAN.G993.39' => 'can', 'CANSAT01G2052' => 'cansat', 'CANSAT80G0070' => 'cansat', 'CANSAT80G0483' => 'cansat', 'CANSAT80G0625' => 'cansat', 'CARHR019690' => 'chi', 'CARHR080280' => 'chi', 'CARHR152750' => 'chi', 'CARHR152760' => 'chi', 'CARHR152770' => 'chi', 'CARHR200340' => 'chi', 'CARHR232370' => 'chi', 'CARHR244670' => 'chi', 'CARHR244680' => 'chi', 'CARHR257520' => 'chi', 'Carub.0001s1872' => 'cru', 'Carub.0006s1130' => 'cru', 'Carub.0007s0396' => 'cru', 'Carub.0007s0397' => 'cru', 'Carub.0007s1608' => 'cru', 'Carub.0008s1068' => 'cru', 'Carub.0008s1077' => 'cru', 'Ca_16158_v3' => 'car', 'Ca_17571_v3' => 'car', 'Ca_21936_v3' => 'car', 'Ca_22350_v3' => 'car', 'CBR_g22445' => 'cbr', 'CBR_g26290' => 'cbr', 'Cc04_g09610' => 'ccan', 'Cc04_g12280' => 'ccan', 'Cc07_g10230' => 'ccan', 'CDE02G0093' => 'cde', 'CDE02G0701' => 'cde', 'CDE04G1050' => 'cde', 'CDE05G1833' => 'cde', 'CDE05G3058' => 'cde', 'CDE05G3380' => 'cde', 'CDE06G0536' => 'cde', 'Cfa006923' => 'cfa', 'Cfa009402' => 'cfa', 'Cfa018751' => 'cfa', 'Cfa019164' => 'cfa', 'Cfa022935' => 'cfa', 'Ciclev10019081m.g' => 'ccl', 'Ciclev10025076m.g' => 'ccl', 'Ciclev10030712m.g' => 'ccl', 'Ciclev10033760m.g' => 'ccl', 'CiPaw.05G105600' => 'cil', 'CiPaw.08G136700' => 'cil', 'CiPaw.11G003900' => 'cil', 'CiPaw.11G023700' => 'cil', 'CiPaw.12G003700' => 'cil', 'ClCG06G017100' => 'cla', 'ClCG06G018110' => 'cla', 'ClCG07G008800' => 'cla', 'ClCG07G015330' => 'cla', 'COL.COLO4_13698' => 'col', 'COL.COLO4_16659' => 'col', 'COL.COLO4_21986' => 'col', 'COL.COLO4_24049' => 'col', 'COL.COLO4_29061' => 'col', 'COL.COLO4_29075' => 'col', 'COL.COLO4_30094' => 'col', 'Cpa.g.c33689' => 'cpa', 'Cpa.g.sc108.39' => 'cpa', 'Cpa.g.sc108.41' => 'cpa', 'Cpa.g.sc1163.1' => 'cpa', 'Cpa.g.sc4.155' => 'cpa', 'Cpa.g.sc6.194' => 'cpa', 'CsaV3_1G000340' => 'csa', 'CsaV3_1G001400' => 'csa', 'CsaV3_4G002220' => 'csa', 'CsaV3_4G005370' => 'csa', 'CSS0007487' => 'camsi', 'CSS0008066' => 'camsi', 'CSS0009120' => 'camsi', 'CSS0015512' => 'camsi', 'CSS0022409' => 'camsi', 'CSS0025358' => 'camsi', 'CSS0044547' => 'camsi', 'DCAR_013057' => 'dca', 'DCAR_015058' => 'dca', 'DCAR_016027' => 'dca', 'DCAR_017327' => 'dca', 'DCAR_020743' => 'dca', 'DCAR_026157' => 'dca', 'DCAR_032339' => 'dca', 'DCAR_032340' => 'dca', 'Dinv11200' => 'din', 'Dinv11201' => 'din', 'Dinv20631' => 'din', 'Dinv23182' => 'din', 'Dinv33466' => 'din', 'Dinv33583' => 'din', 'Dinv38565' => 'din', 'Duzib068G0200' => 'dzi', 'Duzib147G0132' => 'dzi', 'Duzib147G0635' => 'dzi', 'Duzib205G1670' => 'dzi', 'Duzib251G0606' => 'dzi', 'ECA232G3336' => 'eca', 'ECA232G3763' => 'eca', 'ECA232G4845' => 'eca', 'ECA234G1607' => 'eca', 'ECA246G0932' => 'eca', 'ECA247G0781' => 'eca', 'ECA247G1932' => 'eca', 'ECA247G2079' => 'eca', 'ECA247G3338' => 'eca', 'ECA247G4115' => 'eca', 'EL10Ac3g06552' => 'bvu', 'EL10Ac5g10721' => 'bvu', 'EL10Ac5g10722' => 'bvu', 'EL10Ac5g10723' => 'bvu', 'EL10Ac5g11361' => 'bvu', 'EL10Ac6g13553' => 'bvu', 'EL10As8g23872' => 'bvu', 'Eucgr.B00250' => 'egr', 'Eucgr.B00251' => 'egr', 'Eucgr.B03533' => 'egr', 'Eucgr.I02381' => 'egr', 'Eucgr.K02700' => 'egr', 'FAN02G0174' => 'fan', 'FAN02G3146' => 'fan', 'FAN04G1672' => 'fan', 'FAN04G2273' => 'fan', 'FAN05G2791' => 'fan', 'FAN05G4035' => 'fan', 'FAN07G0834' => 'fan', 'FAN08G1198' => 'fan', 'FAN09G4182' => 'fan', 'FAN12G0496' => 'fan', 'FAN13G1027' => 'fan', 'FAN13G2951' => 'fan', 'FAN14G0705' => 'fan', 'FAN14G0720' => 'fan', 'FAN17G0201' => 'fan', 'FAN17G2665' => 'fan', 'FAN18G1456' => 'fan', 'FAN18G1525' => 'fan', 'FAN18G3500' => 'fan', 'FAN28G2670' => 'fan', 'FvH4_1g12391' => 'fve', 'FvH4_4g23220' => 'fve', 'FvH4_5g08810' => 'fve', 'FvH4_5g28960' => 'fve', 'FvH4_6g42820' => 'fve', 'FvH4_6g51110' => 'fve', 'Glyma.02G051802' => 'gma', 'Glyma.04G185300' => 'gma', 'Glyma.05G202900' => 'gma', 'Glyma.08G010300' => 'gma', 'Glyma.16G131900' => 'gma', 'Glyma.17G087900' => 'gma', 'Gohir.A07G048600' => 'ghi', 'Gohir.A11G179000' => 'ghi', 'Gohir.A12G140900' => 'ghi', 'Gohir.A12G140950' => 'ghi', 'Gohir.A12G191700' => 'ghi', 'Gohir.A13G086300' => 'ghi', 'Gohir.D07G052900' => 'ghi', 'Gohir.D11G186600' => 'ghi', 'Gohir.D12G145575' => 'ghi', 'Gohir.D12G145650' => 'ghi', 'Gohir.D12G145725' => 'ghi', 'Gohir.D12G194050' => 'ghi', 'Gohir.D13G091800' => 'ghi', 'Gorai.001G055900' => 'gra', 'Gorai.007G198400' => 'gra', 'Gorai.008G157000' => 'gra', 'Gorai.008G157100' => 'gra', 'Gorai.008G208700' => 'gra', 'Gorai.010G138700' => 'gra', 'GSVIVG01000977001' => 'vvi', 'GSVIVG01007708001' => 'vvi', 'GSVIVG01008587001' => 'vvi', 'GSVIVG01018849001' => 'vvi', 'GSVIVG01032432001' => 'vvi', 'HanXRQChr02g0034131' => 'han', 'HanXRQChr02g0035981' => 'han', 'HanXRQChr02g0035991' => 'han', 'HanXRQChr05g0155611' => 'han', 'HanXRQChr05g0155621' => 'han', 'HanXRQChr08g0236501' => 'han', 'HanXRQChr09g0261321' => 'han', 'HanXRQChr09g0272081' => 'han', 'HanXRQChr10g0310741' => 'han', 'HanXRQChr11g0325591' => 'han', 'HanXRQChr12g0385691' => 'han', 'HanXRQChr13g0387801' => 'han', 'HanXRQChr15g0463011' => 'han', 'Haze_03826' => 'cav', 'Haze_03827' => 'cav', 'Haze_07183' => 'cav', 'Haze_07537' => 'cav', 'Haze_07539' => 'cav', 'Haze_12461' => 'cav', 'Haze_16115' => 'cav', 'Haze_16808' => 'cav', 'Haze_18531' => 'cav', 'Hma1.2p1_0046F.1_g026700' => 'hma', 'Hma1.2p1_0046F.1_g026710' => 'hma', 'Hma1.2p1_0168F.1_g074340' => 'hma', 'Hma1.2p1_0266F.1_g107030' => 'hma', 'Hma1.2p1_0266F.1_g107060' => 'hma', 'Hma1.2p1_0275F.1_g110510' => 'hma', 'Hma1.2p1_0592F.1_g185490' => 'hma', 'Hma1.2p1_0592F.1_g185500' => 'hma', 'Hma1.2p1_0592F.1_g185510' => 'hma', 'Hma1.2p1_0592F.1_g185520' => 'hma', 'Hma1.2p1_0592F.1_g185530' => 'hma', 'Hma1.2p1_0818F.1_g223450' => 'hma', 'HPP92_009708' => 'vpl', 'HPP92_009793' => 'vpl', 'HPP92_009796' => 'vpl', 'HPP92_009797' => 'vpl', 'HPP92_014940' => 'vpl', 'HPP92_014988' => 'vpl', 'Hund02463' => 'sun', 'Hund02760' => 'sun', 'Hund05071' => 'sun', 'Hund10108' => 'sun', 'Hund11204' => 'sun', 'Hund14016' => 'sun', 'Hund16464' => 'sun', 'Lalb_Chr09g0333391' => 'lal', 'Lalb_Chr11g0070461' => 'lal', 'Lalb_Chr12g0201671' => 'lal', 'Lalb_Chr13g0297161' => 'lal', 'Lj1g0002823' => 'lja', 'Lj3C1074T6' => 'lonja', 'Lj4A212T28' => 'lonja', 'Lj4g0005516' => 'lja', 'Lj4g0013705' => 'lja', 'Lj4g0027865' => 'lja', 'Lj5C92G16' => 'lonja', 'Lj5C92T12' => 'lonja', 'Lj7C596T3' => 'lonja', 'Lj9A446G59' => 'lonja', 'Lj9A482G21' => 'lonja', 'Lsat_1_v5_gn_1_28261' => 'lsa', 'Lsat_1_v5_gn_1_28281' => 'lsa', 'Lsat_1_v5_gn_1_32721' => 'lsa', 'Lsat_1_v5_gn_4_151760' => 'lsa', 'Lsat_1_v5_gn_4_2120' => 'lsa', 'Lsat_1_v5_gn_4_75761' => 'lsa', 'Lsat_1_v5_gn_5_10920' => 'lsa', 'Manes.02G099900' => 'mes', 'Manes.11G096200' => 'mes', 'Manes.12G007200' => 'mes', 'Manes.14G048300' => 'mes', 'Manes.17G114700' => 'mes', 'Mapoly0002s0070' => 'mpo', 'Mapoly0029s0099' => 'mpo', 'MBI07_g24742_MAGBIO' => 'mbi', 'MBI10_g27988_MAGBIO' => 'mbi', 'MBI11_g13057_MAGBIO' => 'mbi', 'MD02G1137200' => 'mdo', 'MD06G1137200' => 'mdo', 'MD07G1122300' => 'mdo', 'MD09G1078200' => 'mdo', 'MD13G1123700' => 'mdo', 'MD14G1151900' => 'mdo', 'MD17G1030900' => 'mdo', 'MD17G1068200' => 'mdo', 'MD17G1068600' => 'mdo', 'Medtr3g077540' => 'mtr', 'Medtr4g105530' => 'mtr', 'Medtr8g076580' => 'mtr', 'Medtr8g076590' => 'mtr', 'Medtr8g096410' => 'mtr', 'MELO3C016411.2' => 'cme', 'MELO3C017780.2' => 'cme', 'MELO3C022560.2' => 'cme', 'MELO3C026187.2' => 'cme', 'MELO3C026286.2' => 'cme', 'MELO3C032854.2' => 'cme', 'Migut.H02495' => 'egut', 'Migut.I00561' => 'egut', 'Migut.K01015' => 'egut', 'Migut.K01016' => 'egut', 'Migut.L00743' => 'egut', 'Migut.L00744' => 'egut', 'Migut.L00746' => 'egut', 'Migut.L00798' => 'egut', 'Migut.L00799' => 'egut', 'Migut.N02096' => 'egut', 'MSTRG.11259' => 'ama', 'MSTRG.23142' => 'ama', 'MSTRG.2499' => 'ama', 'Nitab4.5_0000003g0730' => 'nta', 'Nitab4.5_0000137g0020' => 'nta', 'Nitab4.5_0000721g0210' => 'nta', 'Nitab4.5_0000723g0050' => 'nta', 'Nitab4.5_0000913g0070' => 'nta', 'Nitab4.5_0001332g0040' => 'nta', 'Nitab4.5_0001771g0050' => 'nta', 'Nitab4.5_0001918g0050' => 'nta', 'Nitab4.5_0002686g0030' => 'nta', 'Nitab4.5_0003156g0020' => 'nta', 'Nitab4.5_0003383g0040' => 'nta', 'Nitab4.5_0003918g0010' => 'nta', 'Nitab4.5_0006760g0010' => 'nta', 'Nn1g05981' => 'nnu', 'Nn1g06288' => 'nnu', 'Nn3g16371' => 'nnu', 'Nn3g16786' => 'nnu', 'Nn4g22232' => 'nnu', 'Oeu005144.1' => 'oeu', 'Oeu005145.1' => 'oeu', 'Oeu011348.1' => 'oeu', 'Oeu016415.1' => 'oeu', 'Oeu023501.1' => 'oeu', 'Oeu044473.1' => 'oeu', 'Oeu048892.2' => 'oeu', 'Os01g0549200' => 'osa', 'Os02g0469300' => 'osa', 'Os04g0311100' => 'osa', 'Os06g0474900' => 'osa', 'Os10g0181700' => 'osa', 'Os11g0454800' => 'osa', 'Peaxi162Scf00037g00714' => 'pax', 'Peaxi162Scf00084g01217' => 'pax', 'Peaxi162Scf00257g00217' => 'pax', 'Peaxi162Scf00516g00215' => 'pax', 'Peaxi162Scf00689g00123' => 'pax', 'PGR044G2719' => 'pgr', 'PGR083G1360' => 'pgr', 'PGR102G2849' => 'pgr', 'PGR119G2534' => 'pgr', 'PGSC0003DMG400003538' => 'stu', 'PGSC0003DMG400028138' => 'stu', 'PGSC0003DMG400031732' => 'stu', 'PGSC0003DMG400038165' => 'stu', 'Phvul.002G284600' => 'pvu', 'Phvul.003G258200' => 'pvu', 'Phvul.009G176500' => 'pvu', 'Potri.003G167201' => 'ptr', 'Potri.005G118400' => 'ptr', 'Potri.012G089000' => 'ptr', 'Potri.012G102800' => 'ptr', 'Potri.015G079400' => 'ptr', 'Potri.015G100900' => 'ptr', 'Pp3c14_9810' => 'ppa', 'Pp3c15_10450' => 'ppa', 'Pp3c20_19150' => 'ppa', 'Pp3c23_12740' => 'ppa', 'Pp3c23_6310' => 'ppa', 'Pp3c24_3720' => 'ppa', 'Pp3c27_2580' => 'ppa', 'Pp3c9_8990' => 'ppa', 'PRCOL_00002854' => 'pco', 'Prupe.1G221200' => 'ppe', 'Prupe.3G289000' => 'ppe', 'Prupe.5G147000' => 'ppe', 'Prupe.6G157300' => 'ppe', 'Prupe.7G163400' => 'ppe', 'Psat0s2177g0040' => 'psa', 'Psat3g174760' => 'psa', 'Psat3g192160' => 'psa', 'Psat4g058520' => 'psa', 'Psat4g096840' => 'psa', 'Psat7g037320' => 'psa', 'PSO017G1274' => 'pso', 'PSO017G5166' => 'pso', 'PSO063G4558' => 'pso', 'PSO170G4458' => 'pso', 'PSO170G5005' => 'pso', 'PSO210G6156' => 'pso', 'PSO210G6635' => 'pso', 'PSO210G7397' => 'pso', 'PSO210G7700' => 'pso', 'PSO455G0035' => 'pso', 'PSO455G0180' => 'pso', 'PSO478G4515' => 'pso', 'PSO832G1305' => 'pso', 'PSO832G3489' => 'pso', 'QL02p075247' => 'qlo', 'QL03p051148' => 'qlo', 'QL05p010313' => 'qlo', 'QL06p034627' => 'qlo', 'QL10p001889' => 'qlo', 'QL10p010846' => 'qlo', 'RcHm_v2.0_Chr1g0350621' => 'rch', 'RcHm_v2.0_Chr1g0350641' => 'rch', 'RcHm_v2.0_Chr2g0092891' => 'rch', 'RcHm_v2.0_Chr2g0100251' => 'rch', 'RcHm_v2.0_Chr2g0158661' => 'rch', 'RcHm_v2.0_Chr2g0172741' => 'rch', 'RcHm_v2.0_Chr4g0429571' => 'rch', 'RcHm_v2.0_Chr5g0042471' => 'rch', 'RcHm_v2.0_Chr7g0189451' => 'rch', 'Rhsim08G0052000' => 'rsi', 'Rhsim08G0174400' => 'rsi', 'Rhsim08G0193200' => 'rsi', 'Rhsim10G0214800' => 'rsi', 'Rhsim10G0214900' => 'rsi', 'Rhsim10G0215000' => 'rsi', 'Rhsim12G0022900' => 'rsi', 'Rhsim12G0177500' => 'rsi', 'Rhsim12G0177700' => 'rsi', 'Sabra03G0122600' => 'sbr', 'Sabra05G0097400' => 'sbr', 'Sabra12G0064100' => 'sbr', 'Sabra15G0121300' => 'sbr', 'SalBow2G0642' => 'sbo', 'SalBow5G2667' => 'sbo', 'SalBow5G4873' => 'sbo', 'SalBow8G2395' => 'sbo', 'Sc03g0003290' => 'sci', 'Sc10g0010130' => 'sci', 'Sc22g0003650' => 'sci', 'Sed0001603' => 'sed', 'Sed0004259' => 'sed', 'Sed0006789' => 'sed', 'Sed0011838' => 'sed', 'Sed0012964' => 'sed', 'Sed0016383' => 'sed', 'Sed0019010' => 'sed', 'Sed0020188' => 'sed', 'SEGI_04702' => 'sgi', 'SEGI_17231' => 'sgi', 'SEGI_18877' => 'sgi', 'SEGI_25196' => 'sgi', 'SEGI_25515' => 'sgi', 'SEGI_28445' => 'sgi', 'SEGI_37452' => 'sgi', 'SGA_v2.0_scaffold188G40336' => 'sas', 'SGA_v2.0_scaffold228G43247' => 'sas', 'SGA_v2.0_scaffold280G46853' => 'sas', 'SGA_v2.0_scaffold34G13808' => 'sas', 'SGA_v2.0_scaffold40G15576' => 'sas', 'SGA_v2.0_scaffold611G53188' => 'sas', 'SGA_v2.0_scaffold78G25461' => 'sas', 'SGA_v2.0_scaffold90G27888' => 'sas', 'SHI08601' => 'shi', 'SHI08606' => 'shi', 'SHI17117' => 'shi', 'SHI17119' => 'shi', 'SMO118G0201' => 'smo', 'SMO169G0247' => 'smo', 'SMO176G0006' => 'smo', 'SMO176G0015' => 'smo', 'SMO202G0006' => 'smo', 'SMO240G0050' => 'smo', 'SMO286G0009' => 'smo', 'SMO338G0033' => 'smo', 'SMO356G0533' => 'smo', 'SMO364G0382' => 'smo', 'SMO367G0166' => 'smo', 'SMO367G1098' => 'smo', 'Solyc01g009920.3' => 'sly', 'Solyc01g099300.3' => 'sly', 'Solyc02g084700.3' => 'sly', 'Solyc03g097520.3' => 'sly', 'Solyc06g071580.3' => 'sly', 'Solyc10g081760.3' => 'sly', 'Sopen01g005480' => 'spe', 'Sopen01g042850' => 'spe', 'Sopen02g029370' => 'spe', 'Sopen03g028280' => 'spe', 'Sopen06g027870' => 'spe', 'Sopen10g032270' => 'spe', 'Sp5g18180' => 'spa', 'Sp6g12880' => 'spa', 'Sp6g30850' => 'spa', 'Sp7g22960' => 'spa', 'Sp7g34010' => 'spa', 'SpUn1326_0010' => 'spa', 'TAR371G0242' => 'tar', 'TAR622G0638' => 'tar', 'TAR628G1548' => 'tar', 'TAR629G1079' => 'tar', 'TAR629G3413' => 'tar', 'THA.LOC104804249' => 'tha', 'THA.LOC104808315' => 'tha', 'THA.LOC104809238' => 'tha', 'THA.LOC104825484' => 'tha', 'Thecc.01G025500' => 'tca', 'Thecc.03G015800' => 'tca', 'Thecc.03G018000' => 'tca', 'Thecc.03G134800' => 'tca', 'Thecc.04G014700' => 'tca', 'Thhalv10006991m.g' => 'esa', 'Thhalv10012707m.g' => 'esa', 'Thhalv10015739m.g' => 'esa', 'Thhalv10024553m.g' => 'esa', 'Thhalv10024673m.g' => 'esa', 'Thhalv10029187m.g' => 'esa', 'TPR.G12971' => 'tpr', 'TPR.G29396' => 'tpr', 'TPR.G33376' => 'tpr', 'TPR.G35508' => 'tpr', 'TPR.G35516' => 'tpr', 'TPR.G37317' => 'tpr', 'TPR.G37389' => 'tpr', 'TPR.G37523' => 'tpr', 'TPR.G559' => 'tpr', 'TWI14G0070' => 'twi', 'TWI14G0729' => 'twi', 'TWI18G0596' => 'twi', 'TWI39G0780' => 'twi', 'TWI39G0850' => 'twi', 'TWI73G1052' => 'twi', 'unitig_52.g17485' => 'ugi', 'unitig_61.g26355' => 'ugi', 'vmacro01040' => 'vma', 'vmacro16731' => 'vma', 'vmacro18270' => 'vma', 'vmacro19142' => 'vma', 'vmacro19407' => 'vma', 'vmacro19408' => 'vma', 'vmacro21899' => 'vma', 'vmacro21900' => 'vma', 'vmacro21901' => 'vma', 'VMungo0251G0490' => 'vmu', 'VMungo0251G1748' => 'vmu', 'VMungo1309G0421' => 'vmu', 'Zm00001eb086500' => 'zma', 'Zm00001eb150680' => 'zma', 'Zm00001eb162330' => 'zma', 'Zm00001eb203130' => 'zma', 'Zm00001eb369480' => 'zma', 'Zm00001eb382340' => 'zma', 'Zm00001eb416360' => 'zma' ) $gf_id = 'HOM05D000902' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000902' ) $data_identifier = 'HOM05D000902' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 13, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 10, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 6, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 9, 'hma' => (int) 12, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 4, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 6, 'ppa' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 6, 'rch' => (int) 9, 'rsi' => (int) 9, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 12, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 3, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416360' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000902', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '663', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02470' => 'bna', 'A01p16260' => 'bna', 'A02p01680' => 'bna', 'A03p16600' => 'bna', 'A03p55660' => 'bna', 'A03p64160' => 'bna', 'A03p64170' => 'bna', 'A08p31900' => 'bna', 'A09p59530' => 'bna', 'A10p08230' => 'bna', 'A10p25090' => 'bna', 'Aa31LG3G7100' => 'aar', 'Aa31LG3G7110' => 'aar', 'Aa31LG6G13160' => 'aar', 'Aa31LG7G10770' => 'aar', 'Aa31LG7G3830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2723' => 'aag', 'Actinidia08045' => 'ach', 'Actinidia08888' => 'ach', 'Actinidia18333' => 'ach', 'Actinidia19334' => 'ach', 'Actinidia25552' => 'ach', 'Actinidia26089' => 'ach', 'Actinidia30615' => 'ach', 'Actinidia30616' => 'ach', 'Actinidia33083' => 'ach', 'Actinidia35762' => 'ach', 'Ah.02g110620' => 'amhyb', 'Ah.11g046390' => 'amhyb', 'AL1G31670' => 'aly', 'AL6G23730' => 'aly', 'AL7G14740' => 'aly', 'AL7G14750' => 'aly', 'AL7G14760' => 'aly', 'AL7G28220' => 'aly', 'AL8G24940' => 'aly', 'Aqoxy3G01665' => 'aox', 'Aqoxy3G02853' => 'aox', 'Aqoxy5G01513' => 'aox', 'Aqoxy5G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8SKA4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ75LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKDA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0LJZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7REX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZP4YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWX7I5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2QKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS0L9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPCD8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q161UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC7XCF' => 'arhy', 'AT1G19100' => 'ath', 'AT4G24970' => 'ath', 'AT4G36270' => 'ath', 'AT4G36280' => 'ath', 'AT4G36290' => 'ath', 'AT5G13130' => 'ath', 'AT5G50780' => 'ath', 'ATR0582G266' => 'atr', 'ATR0661G195' => 'atr', 'ATR1152G031' => 'atr', 'Atru.chr11.2382' => 'acertr', 'Atru.chr12.2337' => 'acertr', 'Atru.chr3.744' => 'acertr', 'Atru.chr6.1870' => 'acertr', 'Atru.chr9.2515' => 'acertr', 'AUR62004120' => 'cqu', 'AUR62005667' => 'cqu', 'AUR62007634' => 'cqu', 'AUR62008186' => 'cqu', 'AUR62008187' => 'cqu', 'AUR62008188' => 'cqu', 'AUR62027954' => 'cqu', 'AUR62028766' => 'cqu', 'AUR62028767' => 'cqu', 'AUR62028768' => 'cqu', 'AUR62028886' => 'cqu', 'AUR62029563' => 'cqu', 'AUR62038832' => 'cqu', 'BcaB01g04149' => 'bca', 'BcaB03g12940' => 'bca', 'BcaB03g13090' => 'bca', 'BcaB03g14466' => 'bca', 'BcaB05g24035' => 'bca', 'BcaC01g06050' => 'bca', 'BcaC04g19148' => 'bca', 'BcaC04g20761' => 'bca', 'BcaC06g32845' => 'bca', 'BcaC07g41274' => 'bca', 'BcaC09g50827' => 'bca', 'BcaNung00741' => 'bca', 'BcaNung00742' => 'bca', 'BcaNung01859' => 'bca', 'BcaNung03985' => 'bca', 'BcaNung03989' => 'bca', 'BcaNung05661' => 'bca', 'BolC1t00257H' => 'bol', 'BolC1t01956H' => 'bol', 'BolC2t06534H' => 'bol', 'BolC3t14334H' => 'bol', 'BolC5t30451H' => 'bol', 'BolC7t45880H' => 'bol', 'BolC7t46586H' => 'bol', 'BolC8t49301H' => 'bol', 'BolC8t51837H' => 'bol', 'BolC9t56822H' => 'bol', 'BolC9t59235H' => 'bol', 'BraA01t00234Z' => 'bra', 'BraA01t01563Z' => 'bra', 'BraA02t05147Z' => 'bra', 'BraA03t10947Z' => 'bra', 'BraA03t14633Z' => 'bra', 'BraA08t35112Z' => 'bra', 'BraA09t41330Z' => 'bra', 'BraA10t44570Z' => 'bra', 'C01p02670' => 'bna', 'C01p20260' => 'bna', 'C02p05890' => 'bna', 'C03p19530' => 'bna', 'C05p17470' => 'bna', 'C07p53900' => 'bna', 'C07p61630' => 'bna', 'C08p16800' => 'bna', 'C08p42810' => 'bna', 'C09p39480' => 'bna', 'C09p63980' => 'bna', 'CAN.G1001.7' => 'can', 'CAN.G1034.55' => 'can', 'CAN.G143.7' => 'can', 'CAN.G3340.1' => 'can', 'CAN.G358.19' => 'can', 'CAN.G373.2' => 'can', 'CAN.G674.16' => 'can', 'CAN.G674.17' => 'can', 'CAN.G674.18' => 'can', 'CAN.G732.2' => 'can', 'CAN.G732.3' => 'can', 'CAN.G993.39' => 'can', 'CANSAT01G2052' => 'cansat', 'CANSAT80G0070' => 'cansat', 'CANSAT80G0483' => 'cansat', 'CANSAT80G0625' => 'cansat', 'CARHR019690' => 'chi', 'CARHR080280' => 'chi', 'CARHR152750' => 'chi', 'CARHR152760' => 'chi', 'CARHR152770' => 'chi', 'CARHR200340' => 'chi', 'CARHR232370' => 'chi', 'CARHR244670' => 'chi', 'CARHR244680' => 'chi', 'CARHR257520' => 'chi', 'Carub.0001s1872' => 'cru', 'Carub.0006s1130' => 'cru', 'Carub.0007s0396' => 'cru', 'Carub.0007s0397' => 'cru', 'Carub.0007s1608' => 'cru', 'Carub.0008s1068' => 'cru', 'Carub.0008s1077' => 'cru', 'Ca_16158_v3' => 'car', 'Ca_17571_v3' => 'car', 'Ca_21936_v3' => 'car', 'Ca_22350_v3' => 'car', 'CBR_g22445' => 'cbr', 'CBR_g26290' => 'cbr', 'Cc04_g09610' => 'ccan', 'Cc04_g12280' => 'ccan', 'Cc07_g10230' => 'ccan', 'CDE02G0093' => 'cde', 'CDE02G0701' => 'cde', 'CDE04G1050' => 'cde', 'CDE05G1833' => 'cde', 'CDE05G3058' => 'cde', 'CDE05G3380' => 'cde', 'CDE06G0536' => 'cde', 'Cfa006923' => 'cfa', 'Cfa009402' => 'cfa', 'Cfa018751' => 'cfa', 'Cfa019164' => 'cfa', 'Cfa022935' => 'cfa', 'Ciclev10019081m.g' => 'ccl', 'Ciclev10025076m.g' => 'ccl', 'Ciclev10030712m.g' => 'ccl', 'Ciclev10033760m.g' => 'ccl', 'CiPaw.05G105600' => 'cil', 'CiPaw.08G136700' => 'cil', 'CiPaw.11G003900' => 'cil', 'CiPaw.11G023700' => 'cil', 'CiPaw.12G003700' => 'cil', 'ClCG06G017100' => 'cla', 'ClCG06G018110' => 'cla', 'ClCG07G008800' => 'cla', 'ClCG07G015330' => 'cla', 'COL.COLO4_13698' => 'col', 'COL.COLO4_16659' => 'col', 'COL.COLO4_21986' => 'col', 'COL.COLO4_24049' => 'col', 'COL.COLO4_29061' => 'col', 'COL.COLO4_29075' => 'col', 'COL.COLO4_30094' => 'col', 'Cpa.g.c33689' => 'cpa', 'Cpa.g.sc108.39' => 'cpa', 'Cpa.g.sc108.41' => 'cpa', 'Cpa.g.sc1163.1' => 'cpa', 'Cpa.g.sc4.155' => 'cpa', 'Cpa.g.sc6.194' => 'cpa', 'CsaV3_1G000340' => 'csa', 'CsaV3_1G001400' => 'csa', 'CsaV3_4G002220' => 'csa', 'CsaV3_4G005370' => 'csa', 'CSS0007487' => 'camsi', 'CSS0008066' => 'camsi', 'CSS0009120' => 'camsi', 'CSS0015512' => 'camsi', 'CSS0022409' => 'camsi', 'CSS0025358' => 'camsi', 'CSS0044547' => 'camsi', 'DCAR_013057' => 'dca', 'DCAR_015058' => 'dca', 'DCAR_016027' => 'dca', 'DCAR_017327' => 'dca', 'DCAR_020743' => 'dca', 'DCAR_026157' => 'dca', 'DCAR_032339' => 'dca', 'DCAR_032340' => 'dca', 'Dinv11200' => 'din', 'Dinv11201' => 'din', 'Dinv20631' => 'din', 'Dinv23182' => 'din', 'Dinv33466' => 'din', 'Dinv33583' => 'din', 'Dinv38565' => 'din', 'Duzib068G0200' => 'dzi', 'Duzib147G0132' => 'dzi', 'Duzib147G0635' => 'dzi', 'Duzib205G1670' => 'dzi', 'Duzib251G0606' => 'dzi', 'ECA232G3336' => 'eca', 'ECA232G3763' => 'eca', 'ECA232G4845' => 'eca', 'ECA234G1607' => 'eca', 'ECA246G0932' => 'eca', 'ECA247G0781' => 'eca', 'ECA247G1932' => 'eca', 'ECA247G2079' => 'eca', 'ECA247G3338' => 'eca', 'ECA247G4115' => 'eca', 'EL10Ac3g06552' => 'bvu', 'EL10Ac5g10721' => 'bvu', 'EL10Ac5g10722' => 'bvu', 'EL10Ac5g10723' => 'bvu', 'EL10Ac5g11361' => 'bvu', 'EL10Ac6g13553' => 'bvu', 'EL10As8g23872' => 'bvu', 'Eucgr.B00250' => 'egr', 'Eucgr.B00251' => 'egr', 'Eucgr.B03533' => 'egr', 'Eucgr.I02381' => 'egr', 'Eucgr.K02700' => 'egr', 'FAN02G0174' => 'fan', 'FAN02G3146' => 'fan', 'FAN04G1672' => 'fan', 'FAN04G2273' => 'fan', 'FAN05G2791' => 'fan', 'FAN05G4035' => 'fan', 'FAN07G0834' => 'fan', 'FAN08G1198' => 'fan', 'FAN09G4182' => 'fan', 'FAN12G0496' => 'fan', 'FAN13G1027' => 'fan', 'FAN13G2951' => 'fan', 'FAN14G0705' => 'fan', 'FAN14G0720' => 'fan', 'FAN17G0201' => 'fan', 'FAN17G2665' => 'fan', 'FAN18G1456' => 'fan', 'FAN18G1525' => 'fan', 'FAN18G3500' => 'fan', 'FAN28G2670' => 'fan', 'FvH4_1g12391' => 'fve', 'FvH4_4g23220' => 'fve', 'FvH4_5g08810' => 'fve', 'FvH4_5g28960' => 'fve', 'FvH4_6g42820' => 'fve', 'FvH4_6g51110' => 'fve', 'Glyma.02G051802' => 'gma', 'Glyma.04G185300' => 'gma', 'Glyma.05G202900' => 'gma', 'Glyma.08G010300' => 'gma', 'Glyma.16G131900' => 'gma', 'Glyma.17G087900' => 'gma', 'Gohir.A07G048600' => 'ghi', 'Gohir.A11G179000' => 'ghi', 'Gohir.A12G140900' => 'ghi', 'Gohir.A12G140950' => 'ghi', 'Gohir.A12G191700' => 'ghi', 'Gohir.A13G086300' => 'ghi', 'Gohir.D07G052900' => 'ghi', 'Gohir.D11G186600' => 'ghi', 'Gohir.D12G145575' => 'ghi', 'Gohir.D12G145650' => 'ghi', 'Gohir.D12G145725' => 'ghi', 'Gohir.D12G194050' => 'ghi', 'Gohir.D13G091800' => 'ghi', 'Gorai.001G055900' => 'gra', 'Gorai.007G198400' => 'gra', 'Gorai.008G157000' => 'gra', 'Gorai.008G157100' => 'gra', 'Gorai.008G208700' => 'gra', 'Gorai.010G138700' => 'gra', 'GSVIVG01000977001' => 'vvi', 'GSVIVG01007708001' => 'vvi', 'GSVIVG01008587001' => 'vvi', 'GSVIVG01018849001' => 'vvi', 'GSVIVG01032432001' => 'vvi', 'HanXRQChr02g0034131' => 'han', 'HanXRQChr02g0035981' => 'han', 'HanXRQChr02g0035991' => 'han', 'HanXRQChr05g0155611' => 'han', 'HanXRQChr05g0155621' => 'han', 'HanXRQChr08g0236501' => 'han', 'HanXRQChr09g0261321' => 'han', 'HanXRQChr09g0272081' => 'han', 'HanXRQChr10g0310741' => 'han', 'HanXRQChr11g0325591' => 'han', 'HanXRQChr12g0385691' => 'han', 'HanXRQChr13g0387801' => 'han', 'HanXRQChr15g0463011' => 'han', 'Haze_03826' => 'cav', 'Haze_03827' => 'cav', 'Haze_07183' => 'cav', 'Haze_07537' => 'cav', 'Haze_07539' => 'cav', 'Haze_12461' => 'cav', 'Haze_16115' => 'cav', 'Haze_16808' => 'cav', 'Haze_18531' => 'cav', 'Hma1.2p1_0046F.1_g026700' => 'hma', 'Hma1.2p1_0046F.1_g026710' => 'hma', 'Hma1.2p1_0168F.1_g074340' => 'hma', 'Hma1.2p1_0266F.1_g107030' => 'hma', 'Hma1.2p1_0266F.1_g107060' => 'hma', 'Hma1.2p1_0275F.1_g110510' => 'hma', 'Hma1.2p1_0592F.1_g185490' => 'hma', 'Hma1.2p1_0592F.1_g185500' => 'hma', 'Hma1.2p1_0592F.1_g185510' => 'hma', 'Hma1.2p1_0592F.1_g185520' => 'hma', 'Hma1.2p1_0592F.1_g185530' => 'hma', 'Hma1.2p1_0818F.1_g223450' => 'hma', 'HPP92_009708' => 'vpl', 'HPP92_009793' => 'vpl', 'HPP92_009796' => 'vpl', 'HPP92_009797' => 'vpl', 'HPP92_014940' => 'vpl', 'HPP92_014988' => 'vpl', 'Hund02463' => 'sun', 'Hund02760' => 'sun', 'Hund05071' => 'sun', 'Hund10108' => 'sun', 'Hund11204' => 'sun', 'Hund14016' => 'sun', 'Hund16464' => 'sun', 'Lalb_Chr09g0333391' => 'lal', 'Lalb_Chr11g0070461' => 'lal', 'Lalb_Chr12g0201671' => 'lal', 'Lalb_Chr13g0297161' => 'lal', 'Lj1g0002823' => 'lja', 'Lj3C1074T6' => 'lonja', 'Lj4A212T28' => 'lonja', 'Lj4g0005516' => 'lja', 'Lj4g0013705' => 'lja', 'Lj4g0027865' => 'lja', 'Lj5C92G16' => 'lonja', 'Lj5C92T12' => 'lonja', 'Lj7C596T3' => 'lonja', 'Lj9A446G59' => 'lonja', 'Lj9A482G21' => 'lonja', 'Lsat_1_v5_gn_1_28261' => 'lsa', 'Lsat_1_v5_gn_1_28281' => 'lsa', 'Lsat_1_v5_gn_1_32721' => 'lsa', 'Lsat_1_v5_gn_4_151760' => 'lsa', 'Lsat_1_v5_gn_4_2120' => 'lsa', 'Lsat_1_v5_gn_4_75761' => 'lsa', 'Lsat_1_v5_gn_5_10920' => 'lsa', 'Manes.02G099900' => 'mes', 'Manes.11G096200' => 'mes', 'Manes.12G007200' => 'mes', 'Manes.14G048300' => 'mes', 'Manes.17G114700' => 'mes', 'Mapoly0002s0070' => 'mpo', 'Mapoly0029s0099' => 'mpo', 'MBI07_g24742_MAGBIO' => 'mbi', 'MBI10_g27988_MAGBIO' => 'mbi', 'MBI11_g13057_MAGBIO' => 'mbi', 'MD02G1137200' => 'mdo', 'MD06G1137200' => 'mdo', 'MD07G1122300' => 'mdo', 'MD09G1078200' => 'mdo', 'MD13G1123700' => 'mdo', 'MD14G1151900' => 'mdo', 'MD17G1030900' => 'mdo', 'MD17G1068200' => 'mdo', 'MD17G1068600' => 'mdo', 'Medtr3g077540' => 'mtr', 'Medtr4g105530' => 'mtr', 'Medtr8g076580' => 'mtr', 'Medtr8g076590' => 'mtr', 'Medtr8g096410' => 'mtr', 'MELO3C016411.2' => 'cme', 'MELO3C017780.2' => 'cme', 'MELO3C022560.2' => 'cme', 'MELO3C026187.2' => 'cme', 'MELO3C026286.2' => 'cme', 'MELO3C032854.2' => 'cme', 'Migut.H02495' => 'egut', 'Migut.I00561' => 'egut', 'Migut.K01015' => 'egut', 'Migut.K01016' => 'egut', 'Migut.L00743' => 'egut', 'Migut.L00744' => 'egut', 'Migut.L00746' => 'egut', 'Migut.L00798' => 'egut', 'Migut.L00799' => 'egut', 'Migut.N02096' => 'egut', 'MSTRG.11259' => 'ama', 'MSTRG.23142' => 'ama', 'MSTRG.2499' => 'ama', 'Nitab4.5_0000003g0730' => 'nta', 'Nitab4.5_0000137g0020' => 'nta', 'Nitab4.5_0000721g0210' => 'nta', 'Nitab4.5_0000723g0050' => 'nta', 'Nitab4.5_0000913g0070' => 'nta', 'Nitab4.5_0001332g0040' => 'nta', 'Nitab4.5_0001771g0050' => 'nta', 'Nitab4.5_0001918g0050' => 'nta', 'Nitab4.5_0002686g0030' => 'nta', 'Nitab4.5_0003156g0020' => 'nta', 'Nitab4.5_0003383g0040' => 'nta', 'Nitab4.5_0003918g0010' => 'nta', 'Nitab4.5_0006760g0010' => 'nta', 'Nn1g05981' => 'nnu', 'Nn1g06288' => 'nnu', 'Nn3g16371' => 'nnu', 'Nn3g16786' => 'nnu', 'Nn4g22232' => 'nnu', 'Oeu005144.1' => 'oeu', 'Oeu005145.1' => 'oeu', 'Oeu011348.1' => 'oeu', 'Oeu016415.1' => 'oeu', 'Oeu023501.1' => 'oeu', 'Oeu044473.1' => 'oeu', 'Oeu048892.2' => 'oeu', 'Os01g0549200' => 'osa', 'Os02g0469300' => 'osa', 'Os04g0311100' => 'osa', 'Os06g0474900' => 'osa', 'Os10g0181700' => 'osa', 'Os11g0454800' => 'osa', 'Peaxi162Scf00037g00714' => 'pax', 'Peaxi162Scf00084g01217' => 'pax', 'Peaxi162Scf00257g00217' => 'pax', 'Peaxi162Scf00516g00215' => 'pax', 'Peaxi162Scf00689g00123' => 'pax', 'PGR044G2719' => 'pgr', 'PGR083G1360' => 'pgr', 'PGR102G2849' => 'pgr', 'PGR119G2534' => 'pgr', 'PGSC0003DMG400003538' => 'stu', 'PGSC0003DMG400028138' => 'stu', 'PGSC0003DMG400031732' => 'stu', 'PGSC0003DMG400038165' => 'stu', 'Phvul.002G284600' => 'pvu', 'Phvul.003G258200' => 'pvu', 'Phvul.009G176500' => 'pvu', 'Potri.003G167201' => 'ptr', 'Potri.005G118400' => 'ptr', 'Potri.012G089000' => 'ptr', 'Potri.012G102800' => 'ptr', 'Potri.015G079400' => 'ptr', 'Potri.015G100900' => 'ptr', 'Pp3c14_9810' => 'ppa', 'Pp3c15_10450' => 'ppa', 'Pp3c20_19150' => 'ppa', 'Pp3c23_12740' => 'ppa', 'Pp3c23_6310' => 'ppa', 'Pp3c24_3720' => 'ppa', 'Pp3c27_2580' => 'ppa', 'Pp3c9_8990' => 'ppa', 'PRCOL_00002854' => 'pco', 'Prupe.1G221200' => 'ppe', 'Prupe.3G289000' => 'ppe', 'Prupe.5G147000' => 'ppe', 'Prupe.6G157300' => 'ppe', 'Prupe.7G163400' => 'ppe', 'Psat0s2177g0040' => 'psa', 'Psat3g174760' => 'psa', 'Psat3g192160' => 'psa', 'Psat4g058520' => 'psa', 'Psat4g096840' => 'psa', 'Psat7g037320' => 'psa', 'PSO017G1274' => 'pso', 'PSO017G5166' => 'pso', 'PSO063G4558' => 'pso', 'PSO170G4458' => 'pso', 'PSO170G5005' => 'pso', 'PSO210G6156' => 'pso', 'PSO210G6635' => 'pso', 'PSO210G7397' => 'pso', 'PSO210G7700' => 'pso', 'PSO455G0035' => 'pso', 'PSO455G0180' => 'pso', 'PSO478G4515' => 'pso', 'PSO832G1305' => 'pso', 'PSO832G3489' => 'pso', 'QL02p075247' => 'qlo', 'QL03p051148' => 'qlo', 'QL05p010313' => 'qlo', 'QL06p034627' => 'qlo', 'QL10p001889' => 'qlo', 'QL10p010846' => 'qlo', 'RcHm_v2.0_Chr1g0350621' => 'rch', 'RcHm_v2.0_Chr1g0350641' => 'rch', 'RcHm_v2.0_Chr2g0092891' => 'rch', 'RcHm_v2.0_Chr2g0100251' => 'rch', 'RcHm_v2.0_Chr2g0158661' => 'rch', 'RcHm_v2.0_Chr2g0172741' => 'rch', 'RcHm_v2.0_Chr4g0429571' => 'rch', 'RcHm_v2.0_Chr5g0042471' => 'rch', 'RcHm_v2.0_Chr7g0189451' => 'rch', 'Rhsim08G0052000' => 'rsi', 'Rhsim08G0174400' => 'rsi', 'Rhsim08G0193200' => 'rsi', 'Rhsim10G0214800' => 'rsi', 'Rhsim10G0214900' => 'rsi', 'Rhsim10G0215000' => 'rsi', 'Rhsim12G0022900' => 'rsi', 'Rhsim12G0177500' => 'rsi', 'Rhsim12G0177700' => 'rsi', 'Sabra03G0122600' => 'sbr', 'Sabra05G0097400' => 'sbr', 'Sabra12G0064100' => 'sbr', 'Sabra15G0121300' => 'sbr', 'SalBow2G0642' => 'sbo', 'SalBow5G2667' => 'sbo', 'SalBow5G4873' => 'sbo', 'SalBow8G2395' => 'sbo', 'Sc03g0003290' => 'sci', 'Sc10g0010130' => 'sci', 'Sc22g0003650' => 'sci', 'Sed0001603' => 'sed', 'Sed0004259' => 'sed', 'Sed0006789' => 'sed', 'Sed0011838' => 'sed', 'Sed0012964' => 'sed', 'Sed0016383' => 'sed', 'Sed0019010' => 'sed', 'Sed0020188' => 'sed', 'SEGI_04702' => 'sgi', 'SEGI_17231' => 'sgi', 'SEGI_18877' => 'sgi', 'SEGI_25196' => 'sgi', 'SEGI_25515' => 'sgi', 'SEGI_28445' => 'sgi', 'SEGI_37452' => 'sgi', 'SGA_v2.0_scaffold188G40336' => 'sas', 'SGA_v2.0_scaffold228G43247' => 'sas', 'SGA_v2.0_scaffold280G46853' => 'sas', 'SGA_v2.0_scaffold34G13808' => 'sas', 'SGA_v2.0_scaffold40G15576' => 'sas', 'SGA_v2.0_scaffold611G53188' => 'sas', 'SGA_v2.0_scaffold78G25461' => 'sas', 'SGA_v2.0_scaffold90G27888' => 'sas', 'SHI08601' => 'shi', 'SHI08606' => 'shi', 'SHI17117' => 'shi', 'SHI17119' => 'shi', 'SMO118G0201' => 'smo', 'SMO169G0247' => 'smo', 'SMO176G0006' => 'smo', 'SMO176G0015' => 'smo', 'SMO202G0006' => 'smo', 'SMO240G0050' => 'smo', 'SMO286G0009' => 'smo', 'SMO338G0033' => 'smo', 'SMO356G0533' => 'smo', 'SMO364G0382' => 'smo', 'SMO367G0166' => 'smo', 'SMO367G1098' => 'smo', 'Solyc01g009920.3' => 'sly', 'Solyc01g099300.3' => 'sly', 'Solyc02g084700.3' => 'sly', 'Solyc03g097520.3' => 'sly', 'Solyc06g071580.3' => 'sly', 'Solyc10g081760.3' => 'sly', 'Sopen01g005480' => 'spe', 'Sopen01g042850' => 'spe', 'Sopen02g029370' => 'spe', 'Sopen03g028280' => 'spe', 'Sopen06g027870' => 'spe', 'Sopen10g032270' => 'spe', 'Sp5g18180' => 'spa', 'Sp6g12880' => 'spa', 'Sp6g30850' => 'spa', 'Sp7g22960' => 'spa', 'Sp7g34010' => 'spa', 'SpUn1326_0010' => 'spa', 'TAR371G0242' => 'tar', 'TAR622G0638' => 'tar', 'TAR628G1548' => 'tar', 'TAR629G1079' => 'tar', 'TAR629G3413' => 'tar', 'THA.LOC104804249' => 'tha', 'THA.LOC104808315' => 'tha', 'THA.LOC104809238' => 'tha', 'THA.LOC104825484' => 'tha', 'Thecc.01G025500' => 'tca', 'Thecc.03G015800' => 'tca', 'Thecc.03G018000' => 'tca', 'Thecc.03G134800' => 'tca', 'Thecc.04G014700' => 'tca', 'Thhalv10006991m.g' => 'esa', 'Thhalv10012707m.g' => 'esa', 'Thhalv10015739m.g' => 'esa', 'Thhalv10024553m.g' => 'esa', 'Thhalv10024673m.g' => 'esa', 'Thhalv10029187m.g' => 'esa', 'TPR.G12971' => 'tpr', 'TPR.G29396' => 'tpr', 'TPR.G33376' => 'tpr', 'TPR.G35508' => 'tpr', 'TPR.G35516' => 'tpr', 'TPR.G37317' => 'tpr', 'TPR.G37389' => 'tpr', 'TPR.G37523' => 'tpr', 'TPR.G559' => 'tpr', 'TWI14G0070' => 'twi', 'TWI14G0729' => 'twi', 'TWI18G0596' => 'twi', 'TWI39G0780' => 'twi', 'TWI39G0850' => 'twi', 'TWI73G1052' => 'twi', 'unitig_52.g17485' => 'ugi', 'unitig_61.g26355' => 'ugi', 'vmacro01040' => 'vma', 'vmacro16731' => 'vma', 'vmacro18270' => 'vma', 'vmacro19142' => 'vma', 'vmacro19407' => 'vma', 'vmacro19408' => 'vma', 'vmacro21899' => 'vma', 'vmacro21900' => 'vma', 'vmacro21901' => 'vma', 'VMungo0251G0490' => 'vmu', 'VMungo0251G1748' => 'vmu', 'VMungo1309G0421' => 'vmu', 'Zm00001eb086500' => 'zma', 'Zm00001eb150680' => 'zma', 'Zm00001eb162330' => 'zma', 'Zm00001eb203130' => 'zma', 'Zm00001eb369480' => 'zma', 'Zm00001eb382340' => 'zma', 'Zm00001eb416360' => 'zma' ), 'gf_id' => 'HOM05D000902', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000902' ), 'data_identifier' => 'HOM05D000902', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000902', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '663', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02470' => 'bna', 'A01p16260' => 'bna', 'A02p01680' => 'bna', 'A03p16600' => 'bna', 'A03p55660' => 'bna', 'A03p64160' => 'bna', 'A03p64170' => 'bna', 'A08p31900' => 'bna', 'A09p59530' => 'bna', 'A10p08230' => 'bna', 'A10p25090' => 'bna', 'Aa31LG3G7100' => 'aar', 'Aa31LG3G7110' => 'aar', 'Aa31LG6G13160' => 'aar', 'Aa31LG7G10770' => 'aar', 'Aa31LG7G3830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2723' => 'aag', 'Actinidia08045' => 'ach', 'Actinidia08888' => 'ach', 'Actinidia18333' => 'ach', 'Actinidia19334' => 'ach', 'Actinidia25552' => 'ach', 'Actinidia26089' => 'ach', 'Actinidia30615' => 'ach', 'Actinidia30616' => 'ach', 'Actinidia33083' => 'ach', 'Actinidia35762' => 'ach', 'Ah.02g110620' => 'amhyb', 'Ah.11g046390' => 'amhyb', 'AL1G31670' => 'aly', 'AL6G23730' => 'aly', 'AL7G14740' => 'aly', 'AL7G14750' => 'aly', 'AL7G14760' => 'aly', 'AL7G28220' => 'aly', 'AL8G24940' => 'aly', 'Aqoxy3G01665' => 'aox', 'Aqoxy3G02853' => 'aox', 'Aqoxy5G01513' => 'aox', 'Aqoxy5G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8SKA4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ75LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKDA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0LJZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7REX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZP4YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWX7I5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2QKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS0L9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPCD8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q161UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC7XCF' => 'arhy', 'AT1G19100' => 'ath', 'AT4G24970' => 'ath', 'AT4G36270' => 'ath', 'AT4G36280' => 'ath', 'AT4G36290' => 'ath', 'AT5G13130' => 'ath', 'AT5G50780' => 'ath', 'ATR0582G266' => 'atr', 'ATR0661G195' => 'atr', 'ATR1152G031' => 'atr', 'Atru.chr11.2382' => 'acertr', 'Atru.chr12.2337' => 'acertr', 'Atru.chr3.744' => 'acertr', 'Atru.chr6.1870' => 'acertr', 'Atru.chr9.2515' => 'acertr', 'AUR62004120' => 'cqu', 'AUR62005667' => 'cqu', 'AUR62007634' => 'cqu', 'AUR62008186' => 'cqu', 'AUR62008187' => 'cqu', 'AUR62008188' => 'cqu', 'AUR62027954' => 'cqu', 'AUR62028766' => 'cqu', 'AUR62028767' => 'cqu', 'AUR62028768' => 'cqu', 'AUR62028886' => 'cqu', 'AUR62029563' => 'cqu', 'AUR62038832' => 'cqu', 'BcaB01g04149' => 'bca', 'BcaB03g12940' => 'bca', 'BcaB03g13090' => 'bca', 'BcaB03g14466' => 'bca', 'BcaB05g24035' => 'bca', 'BcaC01g06050' => 'bca', 'BcaC04g19148' => 'bca', 'BcaC04g20761' => 'bca', 'BcaC06g32845' => 'bca', 'BcaC07g41274' => 'bca', 'BcaC09g50827' => 'bca', 'BcaNung00741' => 'bca', 'BcaNung00742' => 'bca', 'BcaNung01859' => 'bca', 'BcaNung03985' => 'bca', 'BcaNung03989' => 'bca', 'BcaNung05661' => 'bca', 'BolC1t00257H' => 'bol', 'BolC1t01956H' => 'bol', 'BolC2t06534H' => 'bol', 'BolC3t14334H' => 'bol', 'BolC5t30451H' => 'bol', 'BolC7t45880H' => 'bol', 'BolC7t46586H' => 'bol', 'BolC8t49301H' => 'bol', 'BolC8t51837H' => 'bol', 'BolC9t56822H' => 'bol', 'BolC9t59235H' => 'bol', 'BraA01t00234Z' => 'bra', 'BraA01t01563Z' => 'bra', 'BraA02t05147Z' => 'bra', 'BraA03t10947Z' => 'bra', 'BraA03t14633Z' => 'bra', 'BraA08t35112Z' => 'bra', 'BraA09t41330Z' => 'bra', 'BraA10t44570Z' => 'bra', 'C01p02670' => 'bna', 'C01p20260' => 'bna', 'C02p05890' => 'bna', 'C03p19530' => 'bna', 'C05p17470' => 'bna', 'C07p53900' => 'bna', 'C07p61630' => 'bna', 'C08p16800' => 'bna', 'C08p42810' => 'bna', 'C09p39480' => 'bna', 'C09p63980' => 'bna', 'CAN.G1001.7' => 'can', 'CAN.G1034.55' => 'can', 'CAN.G143.7' => 'can', 'CAN.G3340.1' => 'can', 'CAN.G358.19' => 'can', 'CAN.G373.2' => 'can', 'CAN.G674.16' => 'can', 'CAN.G674.17' => 'can', 'CAN.G674.18' => 'can', 'CAN.G732.2' => 'can', 'CAN.G732.3' => 'can', 'CAN.G993.39' => 'can', 'CANSAT01G2052' => 'cansat', 'CANSAT80G0070' => 'cansat', 'CANSAT80G0483' => 'cansat', 'CANSAT80G0625' => 'cansat', 'CARHR019690' => 'chi', 'CARHR080280' => 'chi', 'CARHR152750' => 'chi', 'CARHR152760' => 'chi', 'CARHR152770' => 'chi', 'CARHR200340' => 'chi', 'CARHR232370' => 'chi', 'CARHR244670' => 'chi', 'CARHR244680' => 'chi', 'CARHR257520' => 'chi', 'Carub.0001s1872' => 'cru', 'Carub.0006s1130' => 'cru', 'Carub.0007s0396' => 'cru', 'Carub.0007s0397' => 'cru', 'Carub.0007s1608' => 'cru', 'Carub.0008s1068' => 'cru', 'Carub.0008s1077' => 'cru', 'Ca_16158_v3' => 'car', 'Ca_17571_v3' => 'car', 'Ca_21936_v3' => 'car', 'Ca_22350_v3' => 'car', 'CBR_g22445' => 'cbr', 'CBR_g26290' => 'cbr', 'Cc04_g09610' => 'ccan', 'Cc04_g12280' => 'ccan', 'Cc07_g10230' => 'ccan', 'CDE02G0093' => 'cde', 'CDE02G0701' => 'cde', 'CDE04G1050' => 'cde', 'CDE05G1833' => 'cde', 'CDE05G3058' => 'cde', 'CDE05G3380' => 'cde', 'CDE06G0536' => 'cde', 'Cfa006923' => 'cfa', 'Cfa009402' => 'cfa', 'Cfa018751' => 'cfa', 'Cfa019164' => 'cfa', 'Cfa022935' => 'cfa', 'Ciclev10019081m.g' => 'ccl', 'Ciclev10025076m.g' => 'ccl', 'Ciclev10030712m.g' => 'ccl', 'Ciclev10033760m.g' => 'ccl', 'CiPaw.05G105600' => 'cil', 'CiPaw.08G136700' => 'cil', 'CiPaw.11G003900' => 'cil', 'CiPaw.11G023700' => 'cil', 'CiPaw.12G003700' => 'cil', 'ClCG06G017100' => 'cla', 'ClCG06G018110' => 'cla', 'ClCG07G008800' => 'cla', 'ClCG07G015330' => 'cla', 'COL.COLO4_13698' => 'col', 'COL.COLO4_16659' => 'col', 'COL.COLO4_21986' => 'col', 'COL.COLO4_24049' => 'col', 'COL.COLO4_29061' => 'col', 'COL.COLO4_29075' => 'col', 'COL.COLO4_30094' => 'col', 'Cpa.g.c33689' => 'cpa', 'Cpa.g.sc108.39' => 'cpa', 'Cpa.g.sc108.41' => 'cpa', 'Cpa.g.sc1163.1' => 'cpa', 'Cpa.g.sc4.155' => 'cpa', 'Cpa.g.sc6.194' => 'cpa', 'CsaV3_1G000340' => 'csa', 'CsaV3_1G001400' => 'csa', 'CsaV3_4G002220' => 'csa', 'CsaV3_4G005370' => 'csa', 'CSS0007487' => 'camsi', 'CSS0008066' => 'camsi', 'CSS0009120' => 'camsi', 'CSS0015512' => 'camsi', 'CSS0022409' => 'camsi', 'CSS0025358' => 'camsi', 'CSS0044547' => 'camsi', 'DCAR_013057' => 'dca', 'DCAR_015058' => 'dca', 'DCAR_016027' => 'dca', 'DCAR_017327' => 'dca', 'DCAR_020743' => 'dca', 'DCAR_026157' => 'dca', 'DCAR_032339' => 'dca', 'DCAR_032340' => 'dca', 'Dinv11200' => 'din', 'Dinv11201' => 'din', 'Dinv20631' => 'din', 'Dinv23182' => 'din', 'Dinv33466' => 'din', 'Dinv33583' => 'din', 'Dinv38565' => 'din', 'Duzib068G0200' => 'dzi', 'Duzib147G0132' => 'dzi', 'Duzib147G0635' => 'dzi', 'Duzib205G1670' => 'dzi', 'Duzib251G0606' => 'dzi', 'ECA232G3336' => 'eca', 'ECA232G3763' => 'eca', 'ECA232G4845' => 'eca', 'ECA234G1607' => 'eca', 'ECA246G0932' => 'eca', 'ECA247G0781' => 'eca', 'ECA247G1932' => 'eca', 'ECA247G2079' => 'eca', 'ECA247G3338' => 'eca', 'ECA247G4115' => 'eca', 'EL10Ac3g06552' => 'bvu', 'EL10Ac5g10721' => 'bvu', 'EL10Ac5g10722' => 'bvu', 'EL10Ac5g10723' => 'bvu', 'EL10Ac5g11361' => 'bvu', 'EL10Ac6g13553' => 'bvu', 'EL10As8g23872' => 'bvu', 'Eucgr.B00250' => 'egr', 'Eucgr.B00251' => 'egr', 'Eucgr.B03533' => 'egr', 'Eucgr.I02381' => 'egr', 'Eucgr.K02700' => 'egr', 'FAN02G0174' => 'fan', 'FAN02G3146' => 'fan', 'FAN04G1672' => 'fan', 'FAN04G2273' => 'fan', 'FAN05G2791' => 'fan', 'FAN05G4035' => 'fan', 'FAN07G0834' => 'fan', 'FAN08G1198' => 'fan', 'FAN09G4182' => 'fan', 'FAN12G0496' => 'fan', 'FAN13G1027' => 'fan', 'FAN13G2951' => 'fan', 'FAN14G0705' => 'fan', 'FAN14G0720' => 'fan', 'FAN17G0201' => 'fan', 'FAN17G2665' => 'fan', 'FAN18G1456' => 'fan', 'FAN18G1525' => 'fan', 'FAN18G3500' => 'fan', 'FAN28G2670' => 'fan', 'FvH4_1g12391' => 'fve', 'FvH4_4g23220' => 'fve', 'FvH4_5g08810' => 'fve', 'FvH4_5g28960' => 'fve', 'FvH4_6g42820' => 'fve', 'FvH4_6g51110' => 'fve', 'Glyma.02G051802' => 'gma', 'Glyma.04G185300' => 'gma', 'Glyma.05G202900' => 'gma', 'Glyma.08G010300' => 'gma', 'Glyma.16G131900' => 'gma', 'Glyma.17G087900' => 'gma', 'Gohir.A07G048600' => 'ghi', 'Gohir.A11G179000' => 'ghi', 'Gohir.A12G140900' => 'ghi', 'Gohir.A12G140950' => 'ghi', 'Gohir.A12G191700' => 'ghi', 'Gohir.A13G086300' => 'ghi', 'Gohir.D07G052900' => 'ghi', 'Gohir.D11G186600' => 'ghi', 'Gohir.D12G145575' => 'ghi', 'Gohir.D12G145650' => 'ghi', 'Gohir.D12G145725' => 'ghi', 'Gohir.D12G194050' => 'ghi', 'Gohir.D13G091800' => 'ghi', 'Gorai.001G055900' => 'gra', 'Gorai.007G198400' => 'gra', 'Gorai.008G157000' => 'gra', 'Gorai.008G157100' => 'gra', 'Gorai.008G208700' => 'gra', 'Gorai.010G138700' => 'gra', 'GSVIVG01000977001' => 'vvi', 'GSVIVG01007708001' => 'vvi', 'GSVIVG01008587001' => 'vvi', 'GSVIVG01018849001' => 'vvi', 'GSVIVG01032432001' => 'vvi', 'HanXRQChr02g0034131' => 'han', 'HanXRQChr02g0035981' => 'han', 'HanXRQChr02g0035991' => 'han', 'HanXRQChr05g0155611' => 'han', 'HanXRQChr05g0155621' => 'han', 'HanXRQChr08g0236501' => 'han', 'HanXRQChr09g0261321' => 'han', 'HanXRQChr09g0272081' => 'han', 'HanXRQChr10g0310741' => 'han', 'HanXRQChr11g0325591' => 'han', 'HanXRQChr12g0385691' => 'han', 'HanXRQChr13g0387801' => 'han', 'HanXRQChr15g0463011' => 'han', 'Haze_03826' => 'cav', 'Haze_03827' => 'cav', 'Haze_07183' => 'cav', 'Haze_07537' => 'cav', 'Haze_07539' => 'cav', 'Haze_12461' => 'cav', 'Haze_16115' => 'cav', 'Haze_16808' => 'cav', 'Haze_18531' => 'cav', 'Hma1.2p1_0046F.1_g026700' => 'hma', 'Hma1.2p1_0046F.1_g026710' => 'hma', 'Hma1.2p1_0168F.1_g074340' => 'hma', 'Hma1.2p1_0266F.1_g107030' => 'hma', 'Hma1.2p1_0266F.1_g107060' => 'hma', 'Hma1.2p1_0275F.1_g110510' => 'hma', 'Hma1.2p1_0592F.1_g185490' => 'hma', 'Hma1.2p1_0592F.1_g185500' => 'hma', 'Hma1.2p1_0592F.1_g185510' => 'hma', 'Hma1.2p1_0592F.1_g185520' => 'hma', 'Hma1.2p1_0592F.1_g185530' => 'hma', 'Hma1.2p1_0818F.1_g223450' => 'hma', 'HPP92_009708' => 'vpl', 'HPP92_009793' => 'vpl', 'HPP92_009796' => 'vpl', 'HPP92_009797' => 'vpl', 'HPP92_014940' => 'vpl', 'HPP92_014988' => 'vpl', 'Hund02463' => 'sun', 'Hund02760' => 'sun', 'Hund05071' => 'sun', 'Hund10108' => 'sun', 'Hund11204' => 'sun', 'Hund14016' => 'sun', 'Hund16464' => 'sun', 'Lalb_Chr09g0333391' => 'lal', 'Lalb_Chr11g0070461' => 'lal', 'Lalb_Chr12g0201671' => 'lal', 'Lalb_Chr13g0297161' => 'lal', 'Lj1g0002823' => 'lja', 'Lj3C1074T6' => 'lonja', 'Lj4A212T28' => 'lonja', 'Lj4g0005516' => 'lja', 'Lj4g0013705' => 'lja', 'Lj4g0027865' => 'lja', 'Lj5C92G16' => 'lonja', 'Lj5C92T12' => 'lonja', 'Lj7C596T3' => 'lonja', 'Lj9A446G59' => 'lonja', 'Lj9A482G21' => 'lonja', 'Lsat_1_v5_gn_1_28261' => 'lsa', 'Lsat_1_v5_gn_1_28281' => 'lsa', 'Lsat_1_v5_gn_1_32721' => 'lsa', 'Lsat_1_v5_gn_4_151760' => 'lsa', 'Lsat_1_v5_gn_4_2120' => 'lsa', 'Lsat_1_v5_gn_4_75761' => 'lsa', 'Lsat_1_v5_gn_5_10920' => 'lsa', 'Manes.02G099900' => 'mes', 'Manes.11G096200' => 'mes', 'Manes.12G007200' => 'mes', 'Manes.14G048300' => 'mes', 'Manes.17G114700' => 'mes', 'Mapoly0002s0070' => 'mpo', 'Mapoly0029s0099' => 'mpo', 'MBI07_g24742_MAGBIO' => 'mbi', 'MBI10_g27988_MAGBIO' => 'mbi', 'MBI11_g13057_MAGBIO' => 'mbi', 'MD02G1137200' => 'mdo', 'MD06G1137200' => 'mdo', 'MD07G1122300' => 'mdo', 'MD09G1078200' => 'mdo', 'MD13G1123700' => 'mdo', 'MD14G1151900' => 'mdo', 'MD17G1030900' => 'mdo', 'MD17G1068200' => 'mdo', 'MD17G1068600' => 'mdo', 'Medtr3g077540' => 'mtr', 'Medtr4g105530' => 'mtr', 'Medtr8g076580' => 'mtr', 'Medtr8g076590' => 'mtr', 'Medtr8g096410' => 'mtr', 'MELO3C016411.2' => 'cme', 'MELO3C017780.2' => 'cme', 'MELO3C022560.2' => 'cme', 'MELO3C026187.2' => 'cme', 'MELO3C026286.2' => 'cme', 'MELO3C032854.2' => 'cme', 'Migut.H02495' => 'egut', 'Migut.I00561' => 'egut', 'Migut.K01015' => 'egut', 'Migut.K01016' => 'egut', 'Migut.L00743' => 'egut', 'Migut.L00744' => 'egut', 'Migut.L00746' => 'egut', 'Migut.L00798' => 'egut', 'Migut.L00799' => 'egut', 'Migut.N02096' => 'egut', 'MSTRG.11259' => 'ama', 'MSTRG.23142' => 'ama', 'MSTRG.2499' => 'ama', 'Nitab4.5_0000003g0730' => 'nta', 'Nitab4.5_0000137g0020' => 'nta', 'Nitab4.5_0000721g0210' => 'nta', 'Nitab4.5_0000723g0050' => 'nta', 'Nitab4.5_0000913g0070' => 'nta', 'Nitab4.5_0001332g0040' => 'nta', 'Nitab4.5_0001771g0050' => 'nta', 'Nitab4.5_0001918g0050' => 'nta', 'Nitab4.5_0002686g0030' => 'nta', 'Nitab4.5_0003156g0020' => 'nta', 'Nitab4.5_0003383g0040' => 'nta', 'Nitab4.5_0003918g0010' => 'nta', 'Nitab4.5_0006760g0010' => 'nta', 'Nn1g05981' => 'nnu', 'Nn1g06288' => 'nnu', 'Nn3g16371' => 'nnu', 'Nn3g16786' => 'nnu', 'Nn4g22232' => 'nnu', 'Oeu005144.1' => 'oeu', 'Oeu005145.1' => 'oeu', 'Oeu011348.1' => 'oeu', 'Oeu016415.1' => 'oeu', 'Oeu023501.1' => 'oeu', 'Oeu044473.1' => 'oeu', 'Oeu048892.2' => 'oeu', 'Os01g0549200' => 'osa', 'Os02g0469300' => 'osa', 'Os04g0311100' => 'osa', 'Os06g0474900' => 'osa', 'Os10g0181700' => 'osa', 'Os11g0454800' => 'osa', 'Peaxi162Scf00037g00714' => 'pax', 'Peaxi162Scf00084g01217' => 'pax', 'Peaxi162Scf00257g00217' => 'pax', 'Peaxi162Scf00516g00215' => 'pax', 'Peaxi162Scf00689g00123' => 'pax', 'PGR044G2719' => 'pgr', 'PGR083G1360' => 'pgr', 'PGR102G2849' => 'pgr', 'PGR119G2534' => 'pgr', 'PGSC0003DMG400003538' => 'stu', 'PGSC0003DMG400028138' => 'stu', 'PGSC0003DMG400031732' => 'stu', 'PGSC0003DMG400038165' => 'stu', 'Phvul.002G284600' => 'pvu', 'Phvul.003G258200' => 'pvu', 'Phvul.009G176500' => 'pvu', 'Potri.003G167201' => 'ptr', 'Potri.005G118400' => 'ptr', 'Potri.012G089000' => 'ptr', 'Potri.012G102800' => 'ptr', 'Potri.015G079400' => 'ptr', 'Potri.015G100900' => 'ptr', 'Pp3c14_9810' => 'ppa', 'Pp3c15_10450' => 'ppa', 'Pp3c20_19150' => 'ppa', 'Pp3c23_12740' => 'ppa', 'Pp3c23_6310' => 'ppa', 'Pp3c24_3720' => 'ppa', 'Pp3c27_2580' => 'ppa', 'Pp3c9_8990' => 'ppa', 'PRCOL_00002854' => 'pco', 'Prupe.1G221200' => 'ppe', 'Prupe.3G289000' => 'ppe', 'Prupe.5G147000' => 'ppe', 'Prupe.6G157300' => 'ppe', 'Prupe.7G163400' => 'ppe', 'Psat0s2177g0040' => 'psa', 'Psat3g174760' => 'psa', 'Psat3g192160' => 'psa', 'Psat4g058520' => 'psa', 'Psat4g096840' => 'psa', 'Psat7g037320' => 'psa', 'PSO017G1274' => 'pso', 'PSO017G5166' => 'pso', 'PSO063G4558' => 'pso', 'PSO170G4458' => 'pso', 'PSO170G5005' => 'pso', 'PSO210G6156' => 'pso', 'PSO210G6635' => 'pso', 'PSO210G7397' => 'pso', 'PSO210G7700' => 'pso', 'PSO455G0035' => 'pso', 'PSO455G0180' => 'pso', 'PSO478G4515' => 'pso', 'PSO832G1305' => 'pso', 'PSO832G3489' => 'pso', 'QL02p075247' => 'qlo', 'QL03p051148' => 'qlo', 'QL05p010313' => 'qlo', 'QL06p034627' => 'qlo', 'QL10p001889' => 'qlo', 'QL10p010846' => 'qlo', 'RcHm_v2.0_Chr1g0350621' => 'rch', 'RcHm_v2.0_Chr1g0350641' => 'rch', 'RcHm_v2.0_Chr2g0092891' => 'rch', 'RcHm_v2.0_Chr2g0100251' => 'rch', 'RcHm_v2.0_Chr2g0158661' => 'rch', 'RcHm_v2.0_Chr2g0172741' => 'rch', 'RcHm_v2.0_Chr4g0429571' => 'rch', 'RcHm_v2.0_Chr5g0042471' => 'rch', 'RcHm_v2.0_Chr7g0189451' => 'rch', 'Rhsim08G0052000' => 'rsi', 'Rhsim08G0174400' => 'rsi', 'Rhsim08G0193200' => 'rsi', 'Rhsim10G0214800' => 'rsi', 'Rhsim10G0214900' => 'rsi', 'Rhsim10G0215000' => 'rsi', 'Rhsim12G0022900' => 'rsi', 'Rhsim12G0177500' => 'rsi', 'Rhsim12G0177700' => 'rsi', 'Sabra03G0122600' => 'sbr', 'Sabra05G0097400' => 'sbr', 'Sabra12G0064100' => 'sbr', 'Sabra15G0121300' => 'sbr', 'SalBow2G0642' => 'sbo', 'SalBow5G2667' => 'sbo', 'SalBow5G4873' => 'sbo', 'SalBow8G2395' => 'sbo', 'Sc03g0003290' => 'sci', 'Sc10g0010130' => 'sci', 'Sc22g0003650' => 'sci', 'Sed0001603' => 'sed', 'Sed0004259' => 'sed', 'Sed0006789' => 'sed', 'Sed0011838' => 'sed', 'Sed0012964' => 'sed', 'Sed0016383' => 'sed', 'Sed0019010' => 'sed', 'Sed0020188' => 'sed', 'SEGI_04702' => 'sgi', 'SEGI_17231' => 'sgi', 'SEGI_18877' => 'sgi', 'SEGI_25196' => 'sgi', 'SEGI_25515' => 'sgi', 'SEGI_28445' => 'sgi', 'SEGI_37452' => 'sgi', 'SGA_v2.0_scaffold188G40336' => 'sas', 'SGA_v2.0_scaffold228G43247' => 'sas', 'SGA_v2.0_scaffold280G46853' => 'sas', 'SGA_v2.0_scaffold34G13808' => 'sas', 'SGA_v2.0_scaffold40G15576' => 'sas', 'SGA_v2.0_scaffold611G53188' => 'sas', 'SGA_v2.0_scaffold78G25461' => 'sas', 'SGA_v2.0_scaffold90G27888' => 'sas', 'SHI08601' => 'shi', 'SHI08606' => 'shi', 'SHI17117' => 'shi', 'SHI17119' => 'shi', 'SMO118G0201' => 'smo', 'SMO169G0247' => 'smo', 'SMO176G0006' => 'smo', 'SMO176G0015' => 'smo', 'SMO202G0006' => 'smo', 'SMO240G0050' => 'smo', 'SMO286G0009' => 'smo', 'SMO338G0033' => 'smo', 'SMO356G0533' => 'smo', 'SMO364G0382' => 'smo', 'SMO367G0166' => 'smo', 'SMO367G1098' => 'smo', 'Solyc01g009920.3' => 'sly', 'Solyc01g099300.3' => 'sly', 'Solyc02g084700.3' => 'sly', 'Solyc03g097520.3' => 'sly', 'Solyc06g071580.3' => 'sly', 'Solyc10g081760.3' => 'sly', 'Sopen01g005480' => 'spe', 'Sopen01g042850' => 'spe', 'Sopen02g029370' => 'spe', 'Sopen03g028280' => 'spe', 'Sopen06g027870' => 'spe', 'Sopen10g032270' => 'spe', 'Sp5g18180' => 'spa', 'Sp6g12880' => 'spa', 'Sp6g30850' => 'spa', 'Sp7g22960' => 'spa', 'Sp7g34010' => 'spa', 'SpUn1326_0010' => 'spa', 'TAR371G0242' => 'tar', 'TAR622G0638' => 'tar', 'TAR628G1548' => 'tar', 'TAR629G1079' => 'tar', 'TAR629G3413' => 'tar', 'THA.LOC104804249' => 'tha', 'THA.LOC104808315' => 'tha', 'THA.LOC104809238' => 'tha', 'THA.LOC104825484' => 'tha', 'Thecc.01G025500' => 'tca', 'Thecc.03G015800' => 'tca', 'Thecc.03G018000' => 'tca', 'Thecc.03G134800' => 'tca', 'Thecc.04G014700' => 'tca', 'Thhalv10006991m.g' => 'esa', 'Thhalv10012707m.g' => 'esa', 'Thhalv10015739m.g' => 'esa', 'Thhalv10024553m.g' => 'esa', 'Thhalv10024673m.g' => 'esa', 'Thhalv10029187m.g' => 'esa', 'TPR.G12971' => 'tpr', 'TPR.G29396' => 'tpr', 'TPR.G33376' => 'tpr', 'TPR.G35508' => 'tpr', 'TPR.G35516' => 'tpr', 'TPR.G37317' => 'tpr', 'TPR.G37389' => 'tpr', 'TPR.G37523' => 'tpr', 'TPR.G559' => 'tpr', 'TWI14G0070' => 'twi', 'TWI14G0729' => 'twi', 'TWI18G0596' => 'twi', 'TWI39G0780' => 'twi', 'TWI39G0850' => 'twi', 'TWI73G1052' => 'twi', 'unitig_52.g17485' => 'ugi', 'unitig_61.g26355' => 'ugi', 'vmacro01040' => 'vma', 'vmacro16731' => 'vma', 'vmacro18270' => 'vma', 'vmacro19142' => 'vma', 'vmacro19407' => 'vma', 'vmacro19408' => 'vma', 'vmacro21899' => 'vma', 'vmacro21900' => 'vma', 'vmacro21901' => 'vma', 'VMungo0251G0490' => 'vmu', 'VMungo0251G1748' => 'vmu', 'VMungo1309G0421' => 'vmu', 'Zm00001eb086500' => 'zma', 'Zm00001eb150680' => 'zma', 'Zm00001eb162330' => 'zma', 'Zm00001eb203130' => 'zma', 'Zm00001eb369480' => 'zma', 'Zm00001eb382340' => 'zma', 'Zm00001eb416360' => 'zma' ) $gf_id = 'HOM05D000902' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000902' ) $data_identifier = 'HOM05D000902' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 13, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 10, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 6, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 9, 'hma' => (int) 12, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 4, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 6, 'ppa' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 6, 'rch' => (int) 9, 'rsi' => (int) 9, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 12, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 3, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416360' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000902', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '663', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02470' => 'bna', 'A01p16260' => 'bna', 'A02p01680' => 'bna', 'A03p16600' => 'bna', 'A03p55660' => 'bna', 'A03p64160' => 'bna', 'A03p64170' => 'bna', 'A08p31900' => 'bna', 'A09p59530' => 'bna', 'A10p08230' => 'bna', 'A10p25090' => 'bna', 'Aa31LG3G7100' => 'aar', 'Aa31LG3G7110' => 'aar', 'Aa31LG6G13160' => 'aar', 'Aa31LG7G10770' => 'aar', 'Aa31LG7G3830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2723' => 'aag', 'Actinidia08045' => 'ach', 'Actinidia08888' => 'ach', 'Actinidia18333' => 'ach', 'Actinidia19334' => 'ach', 'Actinidia25552' => 'ach', 'Actinidia26089' => 'ach', 'Actinidia30615' => 'ach', 'Actinidia30616' => 'ach', 'Actinidia33083' => 'ach', 'Actinidia35762' => 'ach', 'Ah.02g110620' => 'amhyb', 'Ah.11g046390' => 'amhyb', 'AL1G31670' => 'aly', 'AL6G23730' => 'aly', 'AL7G14740' => 'aly', 'AL7G14750' => 'aly', 'AL7G14760' => 'aly', 'AL7G28220' => 'aly', 'AL8G24940' => 'aly', 'Aqoxy3G01665' => 'aox', 'Aqoxy3G02853' => 'aox', 'Aqoxy5G01513' => 'aox', 'Aqoxy5G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8SKA4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ75LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKDA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0LJZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7REX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZP4YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWX7I5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2QKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS0L9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPCD8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q161UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC7XCF' => 'arhy', 'AT1G19100' => 'ath', 'AT4G24970' => 'ath', 'AT4G36270' => 'ath', 'AT4G36280' => 'ath', 'AT4G36290' => 'ath', 'AT5G13130' => 'ath', 'AT5G50780' => 'ath', 'ATR0582G266' => 'atr', 'ATR0661G195' => 'atr', 'ATR1152G031' => 'atr', 'Atru.chr11.2382' => 'acertr', 'Atru.chr12.2337' => 'acertr', 'Atru.chr3.744' => 'acertr', 'Atru.chr6.1870' => 'acertr', 'Atru.chr9.2515' => 'acertr', 'AUR62004120' => 'cqu', 'AUR62005667' => 'cqu', 'AUR62007634' => 'cqu', 'AUR62008186' => 'cqu', 'AUR62008187' => 'cqu', 'AUR62008188' => 'cqu', 'AUR62027954' => 'cqu', 'AUR62028766' => 'cqu', 'AUR62028767' => 'cqu', 'AUR62028768' => 'cqu', 'AUR62028886' => 'cqu', 'AUR62029563' => 'cqu', 'AUR62038832' => 'cqu', 'BcaB01g04149' => 'bca', 'BcaB03g12940' => 'bca', 'BcaB03g13090' => 'bca', 'BcaB03g14466' => 'bca', 'BcaB05g24035' => 'bca', 'BcaC01g06050' => 'bca', 'BcaC04g19148' => 'bca', 'BcaC04g20761' => 'bca', 'BcaC06g32845' => 'bca', 'BcaC07g41274' => 'bca', 'BcaC09g50827' => 'bca', 'BcaNung00741' => 'bca', 'BcaNung00742' => 'bca', 'BcaNung01859' => 'bca', 'BcaNung03985' => 'bca', 'BcaNung03989' => 'bca', 'BcaNung05661' => 'bca', 'BolC1t00257H' => 'bol', 'BolC1t01956H' => 'bol', 'BolC2t06534H' => 'bol', 'BolC3t14334H' => 'bol', 'BolC5t30451H' => 'bol', 'BolC7t45880H' => 'bol', 'BolC7t46586H' => 'bol', 'BolC8t49301H' => 'bol', 'BolC8t51837H' => 'bol', 'BolC9t56822H' => 'bol', 'BolC9t59235H' => 'bol', 'BraA01t00234Z' => 'bra', 'BraA01t01563Z' => 'bra', 'BraA02t05147Z' => 'bra', 'BraA03t10947Z' => 'bra', 'BraA03t14633Z' => 'bra', 'BraA08t35112Z' => 'bra', 'BraA09t41330Z' => 'bra', 'BraA10t44570Z' => 'bra', 'C01p02670' => 'bna', 'C01p20260' => 'bna', 'C02p05890' => 'bna', 'C03p19530' => 'bna', 'C05p17470' => 'bna', 'C07p53900' => 'bna', 'C07p61630' => 'bna', 'C08p16800' => 'bna', 'C08p42810' => 'bna', 'C09p39480' => 'bna', 'C09p63980' => 'bna', 'CAN.G1001.7' => 'can', 'CAN.G1034.55' => 'can', 'CAN.G143.7' => 'can', 'CAN.G3340.1' => 'can', 'CAN.G358.19' => 'can', 'CAN.G373.2' => 'can', 'CAN.G674.16' => 'can', 'CAN.G674.17' => 'can', 'CAN.G674.18' => 'can', 'CAN.G732.2' => 'can', 'CAN.G732.3' => 'can', 'CAN.G993.39' => 'can', 'CANSAT01G2052' => 'cansat', 'CANSAT80G0070' => 'cansat', 'CANSAT80G0483' => 'cansat', 'CANSAT80G0625' => 'cansat', 'CARHR019690' => 'chi', 'CARHR080280' => 'chi', 'CARHR152750' => 'chi', 'CARHR152760' => 'chi', 'CARHR152770' => 'chi', 'CARHR200340' => 'chi', 'CARHR232370' => 'chi', 'CARHR244670' => 'chi', 'CARHR244680' => 'chi', 'CARHR257520' => 'chi', 'Carub.0001s1872' => 'cru', 'Carub.0006s1130' => 'cru', 'Carub.0007s0396' => 'cru', 'Carub.0007s0397' => 'cru', 'Carub.0007s1608' => 'cru', 'Carub.0008s1068' => 'cru', 'Carub.0008s1077' => 'cru', 'Ca_16158_v3' => 'car', 'Ca_17571_v3' => 'car', 'Ca_21936_v3' => 'car', 'Ca_22350_v3' => 'car', 'CBR_g22445' => 'cbr', 'CBR_g26290' => 'cbr', 'Cc04_g09610' => 'ccan', 'Cc04_g12280' => 'ccan', 'Cc07_g10230' => 'ccan', 'CDE02G0093' => 'cde', 'CDE02G0701' => 'cde', 'CDE04G1050' => 'cde', 'CDE05G1833' => 'cde', 'CDE05G3058' => 'cde', 'CDE05G3380' => 'cde', 'CDE06G0536' => 'cde', 'Cfa006923' => 'cfa', 'Cfa009402' => 'cfa', 'Cfa018751' => 'cfa', 'Cfa019164' => 'cfa', 'Cfa022935' => 'cfa', 'Ciclev10019081m.g' => 'ccl', 'Ciclev10025076m.g' => 'ccl', 'Ciclev10030712m.g' => 'ccl', 'Ciclev10033760m.g' => 'ccl', 'CiPaw.05G105600' => 'cil', 'CiPaw.08G136700' => 'cil', 'CiPaw.11G003900' => 'cil', 'CiPaw.11G023700' => 'cil', 'CiPaw.12G003700' => 'cil', 'ClCG06G017100' => 'cla', 'ClCG06G018110' => 'cla', 'ClCG07G008800' => 'cla', 'ClCG07G015330' => 'cla', 'COL.COLO4_13698' => 'col', 'COL.COLO4_16659' => 'col', 'COL.COLO4_21986' => 'col', 'COL.COLO4_24049' => 'col', 'COL.COLO4_29061' => 'col', 'COL.COLO4_29075' => 'col', 'COL.COLO4_30094' => 'col', 'Cpa.g.c33689' => 'cpa', 'Cpa.g.sc108.39' => 'cpa', 'Cpa.g.sc108.41' => 'cpa', 'Cpa.g.sc1163.1' => 'cpa', 'Cpa.g.sc4.155' => 'cpa', 'Cpa.g.sc6.194' => 'cpa', 'CsaV3_1G000340' => 'csa', 'CsaV3_1G001400' => 'csa', 'CsaV3_4G002220' => 'csa', 'CsaV3_4G005370' => 'csa', 'CSS0007487' => 'camsi', 'CSS0008066' => 'camsi', 'CSS0009120' => 'camsi', 'CSS0015512' => 'camsi', 'CSS0022409' => 'camsi', 'CSS0025358' => 'camsi', 'CSS0044547' => 'camsi', 'DCAR_013057' => 'dca', 'DCAR_015058' => 'dca', 'DCAR_016027' => 'dca', 'DCAR_017327' => 'dca', 'DCAR_020743' => 'dca', 'DCAR_026157' => 'dca', 'DCAR_032339' => 'dca', 'DCAR_032340' => 'dca', 'Dinv11200' => 'din', 'Dinv11201' => 'din', 'Dinv20631' => 'din', 'Dinv23182' => 'din', 'Dinv33466' => 'din', 'Dinv33583' => 'din', 'Dinv38565' => 'din', 'Duzib068G0200' => 'dzi', 'Duzib147G0132' => 'dzi', 'Duzib147G0635' => 'dzi', 'Duzib205G1670' => 'dzi', 'Duzib251G0606' => 'dzi', 'ECA232G3336' => 'eca', 'ECA232G3763' => 'eca', 'ECA232G4845' => 'eca', 'ECA234G1607' => 'eca', 'ECA246G0932' => 'eca', 'ECA247G0781' => 'eca', 'ECA247G1932' => 'eca', 'ECA247G2079' => 'eca', 'ECA247G3338' => 'eca', 'ECA247G4115' => 'eca', 'EL10Ac3g06552' => 'bvu', 'EL10Ac5g10721' => 'bvu', 'EL10Ac5g10722' => 'bvu', 'EL10Ac5g10723' => 'bvu', 'EL10Ac5g11361' => 'bvu', 'EL10Ac6g13553' => 'bvu', 'EL10As8g23872' => 'bvu', 'Eucgr.B00250' => 'egr', 'Eucgr.B00251' => 'egr', 'Eucgr.B03533' => 'egr', 'Eucgr.I02381' => 'egr', 'Eucgr.K02700' => 'egr', 'FAN02G0174' => 'fan', 'FAN02G3146' => 'fan', 'FAN04G1672' => 'fan', 'FAN04G2273' => 'fan', 'FAN05G2791' => 'fan', 'FAN05G4035' => 'fan', 'FAN07G0834' => 'fan', 'FAN08G1198' => 'fan', 'FAN09G4182' => 'fan', 'FAN12G0496' => 'fan', 'FAN13G1027' => 'fan', 'FAN13G2951' => 'fan', 'FAN14G0705' => 'fan', 'FAN14G0720' => 'fan', 'FAN17G0201' => 'fan', 'FAN17G2665' => 'fan', 'FAN18G1456' => 'fan', 'FAN18G1525' => 'fan', 'FAN18G3500' => 'fan', 'FAN28G2670' => 'fan', 'FvH4_1g12391' => 'fve', 'FvH4_4g23220' => 'fve', 'FvH4_5g08810' => 'fve', 'FvH4_5g28960' => 'fve', 'FvH4_6g42820' => 'fve', 'FvH4_6g51110' => 'fve', 'Glyma.02G051802' => 'gma', 'Glyma.04G185300' => 'gma', 'Glyma.05G202900' => 'gma', 'Glyma.08G010300' => 'gma', 'Glyma.16G131900' => 'gma', 'Glyma.17G087900' => 'gma', 'Gohir.A07G048600' => 'ghi', 'Gohir.A11G179000' => 'ghi', 'Gohir.A12G140900' => 'ghi', 'Gohir.A12G140950' => 'ghi', 'Gohir.A12G191700' => 'ghi', 'Gohir.A13G086300' => 'ghi', 'Gohir.D07G052900' => 'ghi', 'Gohir.D11G186600' => 'ghi', 'Gohir.D12G145575' => 'ghi', 'Gohir.D12G145650' => 'ghi', 'Gohir.D12G145725' => 'ghi', 'Gohir.D12G194050' => 'ghi', 'Gohir.D13G091800' => 'ghi', 'Gorai.001G055900' => 'gra', 'Gorai.007G198400' => 'gra', 'Gorai.008G157000' => 'gra', 'Gorai.008G157100' => 'gra', 'Gorai.008G208700' => 'gra', 'Gorai.010G138700' => 'gra', 'GSVIVG01000977001' => 'vvi', 'GSVIVG01007708001' => 'vvi', 'GSVIVG01008587001' => 'vvi', 'GSVIVG01018849001' => 'vvi', 'GSVIVG01032432001' => 'vvi', 'HanXRQChr02g0034131' => 'han', 'HanXRQChr02g0035981' => 'han', 'HanXRQChr02g0035991' => 'han', 'HanXRQChr05g0155611' => 'han', 'HanXRQChr05g0155621' => 'han', 'HanXRQChr08g0236501' => 'han', 'HanXRQChr09g0261321' => 'han', 'HanXRQChr09g0272081' => 'han', 'HanXRQChr10g0310741' => 'han', 'HanXRQChr11g0325591' => 'han', 'HanXRQChr12g0385691' => 'han', 'HanXRQChr13g0387801' => 'han', 'HanXRQChr15g0463011' => 'han', 'Haze_03826' => 'cav', 'Haze_03827' => 'cav', 'Haze_07183' => 'cav', 'Haze_07537' => 'cav', 'Haze_07539' => 'cav', 'Haze_12461' => 'cav', 'Haze_16115' => 'cav', 'Haze_16808' => 'cav', 'Haze_18531' => 'cav', 'Hma1.2p1_0046F.1_g026700' => 'hma', 'Hma1.2p1_0046F.1_g026710' => 'hma', 'Hma1.2p1_0168F.1_g074340' => 'hma', 'Hma1.2p1_0266F.1_g107030' => 'hma', 'Hma1.2p1_0266F.1_g107060' => 'hma', 'Hma1.2p1_0275F.1_g110510' => 'hma', 'Hma1.2p1_0592F.1_g185490' => 'hma', 'Hma1.2p1_0592F.1_g185500' => 'hma', 'Hma1.2p1_0592F.1_g185510' => 'hma', 'Hma1.2p1_0592F.1_g185520' => 'hma', 'Hma1.2p1_0592F.1_g185530' => 'hma', 'Hma1.2p1_0818F.1_g223450' => 'hma', 'HPP92_009708' => 'vpl', 'HPP92_009793' => 'vpl', 'HPP92_009796' => 'vpl', 'HPP92_009797' => 'vpl', 'HPP92_014940' => 'vpl', 'HPP92_014988' => 'vpl', 'Hund02463' => 'sun', 'Hund02760' => 'sun', 'Hund05071' => 'sun', 'Hund10108' => 'sun', 'Hund11204' => 'sun', 'Hund14016' => 'sun', 'Hund16464' => 'sun', 'Lalb_Chr09g0333391' => 'lal', 'Lalb_Chr11g0070461' => 'lal', 'Lalb_Chr12g0201671' => 'lal', 'Lalb_Chr13g0297161' => 'lal', 'Lj1g0002823' => 'lja', 'Lj3C1074T6' => 'lonja', 'Lj4A212T28' => 'lonja', 'Lj4g0005516' => 'lja', 'Lj4g0013705' => 'lja', 'Lj4g0027865' => 'lja', 'Lj5C92G16' => 'lonja', 'Lj5C92T12' => 'lonja', 'Lj7C596T3' => 'lonja', 'Lj9A446G59' => 'lonja', 'Lj9A482G21' => 'lonja', 'Lsat_1_v5_gn_1_28261' => 'lsa', 'Lsat_1_v5_gn_1_28281' => 'lsa', 'Lsat_1_v5_gn_1_32721' => 'lsa', 'Lsat_1_v5_gn_4_151760' => 'lsa', 'Lsat_1_v5_gn_4_2120' => 'lsa', 'Lsat_1_v5_gn_4_75761' => 'lsa', 'Lsat_1_v5_gn_5_10920' => 'lsa', 'Manes.02G099900' => 'mes', 'Manes.11G096200' => 'mes', 'Manes.12G007200' => 'mes', 'Manes.14G048300' => 'mes', 'Manes.17G114700' => 'mes', 'Mapoly0002s0070' => 'mpo', 'Mapoly0029s0099' => 'mpo', 'MBI07_g24742_MAGBIO' => 'mbi', 'MBI10_g27988_MAGBIO' => 'mbi', 'MBI11_g13057_MAGBIO' => 'mbi', 'MD02G1137200' => 'mdo', 'MD06G1137200' => 'mdo', 'MD07G1122300' => 'mdo', 'MD09G1078200' => 'mdo', 'MD13G1123700' => 'mdo', 'MD14G1151900' => 'mdo', 'MD17G1030900' => 'mdo', 'MD17G1068200' => 'mdo', 'MD17G1068600' => 'mdo', 'Medtr3g077540' => 'mtr', 'Medtr4g105530' => 'mtr', 'Medtr8g076580' => 'mtr', 'Medtr8g076590' => 'mtr', 'Medtr8g096410' => 'mtr', 'MELO3C016411.2' => 'cme', 'MELO3C017780.2' => 'cme', 'MELO3C022560.2' => 'cme', 'MELO3C026187.2' => 'cme', 'MELO3C026286.2' => 'cme', 'MELO3C032854.2' => 'cme', 'Migut.H02495' => 'egut', 'Migut.I00561' => 'egut', 'Migut.K01015' => 'egut', 'Migut.K01016' => 'egut', 'Migut.L00743' => 'egut', 'Migut.L00744' => 'egut', 'Migut.L00746' => 'egut', 'Migut.L00798' => 'egut', 'Migut.L00799' => 'egut', 'Migut.N02096' => 'egut', 'MSTRG.11259' => 'ama', 'MSTRG.23142' => 'ama', 'MSTRG.2499' => 'ama', 'Nitab4.5_0000003g0730' => 'nta', 'Nitab4.5_0000137g0020' => 'nta', 'Nitab4.5_0000721g0210' => 'nta', 'Nitab4.5_0000723g0050' => 'nta', 'Nitab4.5_0000913g0070' => 'nta', 'Nitab4.5_0001332g0040' => 'nta', 'Nitab4.5_0001771g0050' => 'nta', 'Nitab4.5_0001918g0050' => 'nta', 'Nitab4.5_0002686g0030' => 'nta', 'Nitab4.5_0003156g0020' => 'nta', 'Nitab4.5_0003383g0040' => 'nta', 'Nitab4.5_0003918g0010' => 'nta', 'Nitab4.5_0006760g0010' => 'nta', 'Nn1g05981' => 'nnu', 'Nn1g06288' => 'nnu', 'Nn3g16371' => 'nnu', 'Nn3g16786' => 'nnu', 'Nn4g22232' => 'nnu', 'Oeu005144.1' => 'oeu', 'Oeu005145.1' => 'oeu', 'Oeu011348.1' => 'oeu', 'Oeu016415.1' => 'oeu', 'Oeu023501.1' => 'oeu', 'Oeu044473.1' => 'oeu', 'Oeu048892.2' => 'oeu', 'Os01g0549200' => 'osa', 'Os02g0469300' => 'osa', 'Os04g0311100' => 'osa', 'Os06g0474900' => 'osa', 'Os10g0181700' => 'osa', 'Os11g0454800' => 'osa', 'Peaxi162Scf00037g00714' => 'pax', 'Peaxi162Scf00084g01217' => 'pax', 'Peaxi162Scf00257g00217' => 'pax', 'Peaxi162Scf00516g00215' => 'pax', 'Peaxi162Scf00689g00123' => 'pax', 'PGR044G2719' => 'pgr', 'PGR083G1360' => 'pgr', 'PGR102G2849' => 'pgr', 'PGR119G2534' => 'pgr', 'PGSC0003DMG400003538' => 'stu', 'PGSC0003DMG400028138' => 'stu', 'PGSC0003DMG400031732' => 'stu', 'PGSC0003DMG400038165' => 'stu', 'Phvul.002G284600' => 'pvu', 'Phvul.003G258200' => 'pvu', 'Phvul.009G176500' => 'pvu', 'Potri.003G167201' => 'ptr', 'Potri.005G118400' => 'ptr', 'Potri.012G089000' => 'ptr', 'Potri.012G102800' => 'ptr', 'Potri.015G079400' => 'ptr', 'Potri.015G100900' => 'ptr', 'Pp3c14_9810' => 'ppa', 'Pp3c15_10450' => 'ppa', 'Pp3c20_19150' => 'ppa', 'Pp3c23_12740' => 'ppa', 'Pp3c23_6310' => 'ppa', 'Pp3c24_3720' => 'ppa', 'Pp3c27_2580' => 'ppa', 'Pp3c9_8990' => 'ppa', 'PRCOL_00002854' => 'pco', 'Prupe.1G221200' => 'ppe', 'Prupe.3G289000' => 'ppe', 'Prupe.5G147000' => 'ppe', 'Prupe.6G157300' => 'ppe', 'Prupe.7G163400' => 'ppe', 'Psat0s2177g0040' => 'psa', 'Psat3g174760' => 'psa', 'Psat3g192160' => 'psa', 'Psat4g058520' => 'psa', 'Psat4g096840' => 'psa', 'Psat7g037320' => 'psa', 'PSO017G1274' => 'pso', 'PSO017G5166' => 'pso', 'PSO063G4558' => 'pso', 'PSO170G4458' => 'pso', 'PSO170G5005' => 'pso', 'PSO210G6156' => 'pso', 'PSO210G6635' => 'pso', 'PSO210G7397' => 'pso', 'PSO210G7700' => 'pso', 'PSO455G0035' => 'pso', 'PSO455G0180' => 'pso', 'PSO478G4515' => 'pso', 'PSO832G1305' => 'pso', 'PSO832G3489' => 'pso', 'QL02p075247' => 'qlo', 'QL03p051148' => 'qlo', 'QL05p010313' => 'qlo', 'QL06p034627' => 'qlo', 'QL10p001889' => 'qlo', 'QL10p010846' => 'qlo', 'RcHm_v2.0_Chr1g0350621' => 'rch', 'RcHm_v2.0_Chr1g0350641' => 'rch', 'RcHm_v2.0_Chr2g0092891' => 'rch', 'RcHm_v2.0_Chr2g0100251' => 'rch', 'RcHm_v2.0_Chr2g0158661' => 'rch', 'RcHm_v2.0_Chr2g0172741' => 'rch', 'RcHm_v2.0_Chr4g0429571' => 'rch', 'RcHm_v2.0_Chr5g0042471' => 'rch', 'RcHm_v2.0_Chr7g0189451' => 'rch', 'Rhsim08G0052000' => 'rsi', 'Rhsim08G0174400' => 'rsi', 'Rhsim08G0193200' => 'rsi', 'Rhsim10G0214800' => 'rsi', 'Rhsim10G0214900' => 'rsi', 'Rhsim10G0215000' => 'rsi', 'Rhsim12G0022900' => 'rsi', 'Rhsim12G0177500' => 'rsi', 'Rhsim12G0177700' => 'rsi', 'Sabra03G0122600' => 'sbr', 'Sabra05G0097400' => 'sbr', 'Sabra12G0064100' => 'sbr', 'Sabra15G0121300' => 'sbr', 'SalBow2G0642' => 'sbo', 'SalBow5G2667' => 'sbo', 'SalBow5G4873' => 'sbo', 'SalBow8G2395' => 'sbo', 'Sc03g0003290' => 'sci', 'Sc10g0010130' => 'sci', 'Sc22g0003650' => 'sci', 'Sed0001603' => 'sed', 'Sed0004259' => 'sed', 'Sed0006789' => 'sed', 'Sed0011838' => 'sed', 'Sed0012964' => 'sed', 'Sed0016383' => 'sed', 'Sed0019010' => 'sed', 'Sed0020188' => 'sed', 'SEGI_04702' => 'sgi', 'SEGI_17231' => 'sgi', 'SEGI_18877' => 'sgi', 'SEGI_25196' => 'sgi', 'SEGI_25515' => 'sgi', 'SEGI_28445' => 'sgi', 'SEGI_37452' => 'sgi', 'SGA_v2.0_scaffold188G40336' => 'sas', 'SGA_v2.0_scaffold228G43247' => 'sas', 'SGA_v2.0_scaffold280G46853' => 'sas', 'SGA_v2.0_scaffold34G13808' => 'sas', 'SGA_v2.0_scaffold40G15576' => 'sas', 'SGA_v2.0_scaffold611G53188' => 'sas', 'SGA_v2.0_scaffold78G25461' => 'sas', 'SGA_v2.0_scaffold90G27888' => 'sas', 'SHI08601' => 'shi', 'SHI08606' => 'shi', 'SHI17117' => 'shi', 'SHI17119' => 'shi', 'SMO118G0201' => 'smo', 'SMO169G0247' => 'smo', 'SMO176G0006' => 'smo', 'SMO176G0015' => 'smo', 'SMO202G0006' => 'smo', 'SMO240G0050' => 'smo', 'SMO286G0009' => 'smo', 'SMO338G0033' => 'smo', 'SMO356G0533' => 'smo', 'SMO364G0382' => 'smo', 'SMO367G0166' => 'smo', 'SMO367G1098' => 'smo', 'Solyc01g009920.3' => 'sly', 'Solyc01g099300.3' => 'sly', 'Solyc02g084700.3' => 'sly', 'Solyc03g097520.3' => 'sly', 'Solyc06g071580.3' => 'sly', 'Solyc10g081760.3' => 'sly', 'Sopen01g005480' => 'spe', 'Sopen01g042850' => 'spe', 'Sopen02g029370' => 'spe', 'Sopen03g028280' => 'spe', 'Sopen06g027870' => 'spe', 'Sopen10g032270' => 'spe', 'Sp5g18180' => 'spa', 'Sp6g12880' => 'spa', 'Sp6g30850' => 'spa', 'Sp7g22960' => 'spa', 'Sp7g34010' => 'spa', 'SpUn1326_0010' => 'spa', 'TAR371G0242' => 'tar', 'TAR622G0638' => 'tar', 'TAR628G1548' => 'tar', 'TAR629G1079' => 'tar', 'TAR629G3413' => 'tar', 'THA.LOC104804249' => 'tha', 'THA.LOC104808315' => 'tha', 'THA.LOC104809238' => 'tha', 'THA.LOC104825484' => 'tha', 'Thecc.01G025500' => 'tca', 'Thecc.03G015800' => 'tca', 'Thecc.03G018000' => 'tca', 'Thecc.03G134800' => 'tca', 'Thecc.04G014700' => 'tca', 'Thhalv10006991m.g' => 'esa', 'Thhalv10012707m.g' => 'esa', 'Thhalv10015739m.g' => 'esa', 'Thhalv10024553m.g' => 'esa', 'Thhalv10024673m.g' => 'esa', 'Thhalv10029187m.g' => 'esa', 'TPR.G12971' => 'tpr', 'TPR.G29396' => 'tpr', 'TPR.G33376' => 'tpr', 'TPR.G35508' => 'tpr', 'TPR.G35516' => 'tpr', 'TPR.G37317' => 'tpr', 'TPR.G37389' => 'tpr', 'TPR.G37523' => 'tpr', 'TPR.G559' => 'tpr', 'TWI14G0070' => 'twi', 'TWI14G0729' => 'twi', 'TWI18G0596' => 'twi', 'TWI39G0780' => 'twi', 'TWI39G0850' => 'twi', 'TWI73G1052' => 'twi', 'unitig_52.g17485' => 'ugi', 'unitig_61.g26355' => 'ugi', 'vmacro01040' => 'vma', 'vmacro16731' => 'vma', 'vmacro18270' => 'vma', 'vmacro19142' => 'vma', 'vmacro19407' => 'vma', 'vmacro19408' => 'vma', 'vmacro21899' => 'vma', 'vmacro21900' => 'vma', 'vmacro21901' => 'vma', 'VMungo0251G0490' => 'vmu', 'VMungo0251G1748' => 'vmu', 'VMungo1309G0421' => 'vmu', 'Zm00001eb086500' => 'zma', 'Zm00001eb150680' => 'zma', 'Zm00001eb162330' => 'zma', 'Zm00001eb203130' => 'zma', 'Zm00001eb369480' => 'zma', 'Zm00001eb382340' => 'zma', 'Zm00001eb416360' => 'zma' ), 'gf_id' => 'HOM05D000902', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000902' ), 'data_identifier' => 'HOM05D000902', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000902', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '663', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02470' => 'bna', 'A01p16260' => 'bna', 'A02p01680' => 'bna', 'A03p16600' => 'bna', 'A03p55660' => 'bna', 'A03p64160' => 'bna', 'A03p64170' => 'bna', 'A08p31900' => 'bna', 'A09p59530' => 'bna', 'A10p08230' => 'bna', 'A10p25090' => 'bna', 'Aa31LG3G7100' => 'aar', 'Aa31LG3G7110' => 'aar', 'Aa31LG6G13160' => 'aar', 'Aa31LG7G10770' => 'aar', 'Aa31LG7G3830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2723' => 'aag', 'Actinidia08045' => 'ach', 'Actinidia08888' => 'ach', 'Actinidia18333' => 'ach', 'Actinidia19334' => 'ach', 'Actinidia25552' => 'ach', 'Actinidia26089' => 'ach', 'Actinidia30615' => 'ach', 'Actinidia30616' => 'ach', 'Actinidia33083' => 'ach', 'Actinidia35762' => 'ach', 'Ah.02g110620' => 'amhyb', 'Ah.11g046390' => 'amhyb', 'AL1G31670' => 'aly', 'AL6G23730' => 'aly', 'AL7G14740' => 'aly', 'AL7G14750' => 'aly', 'AL7G14760' => 'aly', 'AL7G28220' => 'aly', 'AL8G24940' => 'aly', 'Aqoxy3G01665' => 'aox', 'Aqoxy3G02853' => 'aox', 'Aqoxy5G01513' => 'aox', 'Aqoxy5G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8SKA4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ75LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKDA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0LJZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7REX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZP4YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWX7I5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2QKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS0L9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPCD8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q161UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC7XCF' => 'arhy', 'AT1G19100' => 'ath', 'AT4G24970' => 'ath', 'AT4G36270' => 'ath', 'AT4G36280' => 'ath', 'AT4G36290' => 'ath', 'AT5G13130' => 'ath', 'AT5G50780' => 'ath', 'ATR0582G266' => 'atr', 'ATR0661G195' => 'atr', 'ATR1152G031' => 'atr', 'Atru.chr11.2382' => 'acertr', 'Atru.chr12.2337' => 'acertr', 'Atru.chr3.744' => 'acertr', 'Atru.chr6.1870' => 'acertr', 'Atru.chr9.2515' => 'acertr', 'AUR62004120' => 'cqu', 'AUR62005667' => 'cqu', 'AUR62007634' => 'cqu', 'AUR62008186' => 'cqu', 'AUR62008187' => 'cqu', 'AUR62008188' => 'cqu', 'AUR62027954' => 'cqu', 'AUR62028766' => 'cqu', 'AUR62028767' => 'cqu', 'AUR62028768' => 'cqu', 'AUR62028886' => 'cqu', 'AUR62029563' => 'cqu', 'AUR62038832' => 'cqu', 'BcaB01g04149' => 'bca', 'BcaB03g12940' => 'bca', 'BcaB03g13090' => 'bca', 'BcaB03g14466' => 'bca', 'BcaB05g24035' => 'bca', 'BcaC01g06050' => 'bca', 'BcaC04g19148' => 'bca', 'BcaC04g20761' => 'bca', 'BcaC06g32845' => 'bca', 'BcaC07g41274' => 'bca', 'BcaC09g50827' => 'bca', 'BcaNung00741' => 'bca', 'BcaNung00742' => 'bca', 'BcaNung01859' => 'bca', 'BcaNung03985' => 'bca', 'BcaNung03989' => 'bca', 'BcaNung05661' => 'bca', 'BolC1t00257H' => 'bol', 'BolC1t01956H' => 'bol', 'BolC2t06534H' => 'bol', 'BolC3t14334H' => 'bol', 'BolC5t30451H' => 'bol', 'BolC7t45880H' => 'bol', 'BolC7t46586H' => 'bol', 'BolC8t49301H' => 'bol', 'BolC8t51837H' => 'bol', 'BolC9t56822H' => 'bol', 'BolC9t59235H' => 'bol', 'BraA01t00234Z' => 'bra', 'BraA01t01563Z' => 'bra', 'BraA02t05147Z' => 'bra', 'BraA03t10947Z' => 'bra', 'BraA03t14633Z' => 'bra', 'BraA08t35112Z' => 'bra', 'BraA09t41330Z' => 'bra', 'BraA10t44570Z' => 'bra', 'C01p02670' => 'bna', 'C01p20260' => 'bna', 'C02p05890' => 'bna', 'C03p19530' => 'bna', 'C05p17470' => 'bna', 'C07p53900' => 'bna', 'C07p61630' => 'bna', 'C08p16800' => 'bna', 'C08p42810' => 'bna', 'C09p39480' => 'bna', 'C09p63980' => 'bna', 'CAN.G1001.7' => 'can', 'CAN.G1034.55' => 'can', 'CAN.G143.7' => 'can', 'CAN.G3340.1' => 'can', 'CAN.G358.19' => 'can', 'CAN.G373.2' => 'can', 'CAN.G674.16' => 'can', 'CAN.G674.17' => 'can', 'CAN.G674.18' => 'can', 'CAN.G732.2' => 'can', 'CAN.G732.3' => 'can', 'CAN.G993.39' => 'can', 'CANSAT01G2052' => 'cansat', 'CANSAT80G0070' => 'cansat', 'CANSAT80G0483' => 'cansat', 'CANSAT80G0625' => 'cansat', 'CARHR019690' => 'chi', 'CARHR080280' => 'chi', 'CARHR152750' => 'chi', 'CARHR152760' => 'chi', 'CARHR152770' => 'chi', 'CARHR200340' => 'chi', 'CARHR232370' => 'chi', 'CARHR244670' => 'chi', 'CARHR244680' => 'chi', 'CARHR257520' => 'chi', 'Carub.0001s1872' => 'cru', 'Carub.0006s1130' => 'cru', 'Carub.0007s0396' => 'cru', 'Carub.0007s0397' => 'cru', 'Carub.0007s1608' => 'cru', 'Carub.0008s1068' => 'cru', 'Carub.0008s1077' => 'cru', 'Ca_16158_v3' => 'car', 'Ca_17571_v3' => 'car', 'Ca_21936_v3' => 'car', 'Ca_22350_v3' => 'car', 'CBR_g22445' => 'cbr', 'CBR_g26290' => 'cbr', 'Cc04_g09610' => 'ccan', 'Cc04_g12280' => 'ccan', 'Cc07_g10230' => 'ccan', 'CDE02G0093' => 'cde', 'CDE02G0701' => 'cde', 'CDE04G1050' => 'cde', 'CDE05G1833' => 'cde', 'CDE05G3058' => 'cde', 'CDE05G3380' => 'cde', 'CDE06G0536' => 'cde', 'Cfa006923' => 'cfa', 'Cfa009402' => 'cfa', 'Cfa018751' => 'cfa', 'Cfa019164' => 'cfa', 'Cfa022935' => 'cfa', 'Ciclev10019081m.g' => 'ccl', 'Ciclev10025076m.g' => 'ccl', 'Ciclev10030712m.g' => 'ccl', 'Ciclev10033760m.g' => 'ccl', 'CiPaw.05G105600' => 'cil', 'CiPaw.08G136700' => 'cil', 'CiPaw.11G003900' => 'cil', 'CiPaw.11G023700' => 'cil', 'CiPaw.12G003700' => 'cil', 'ClCG06G017100' => 'cla', 'ClCG06G018110' => 'cla', 'ClCG07G008800' => 'cla', 'ClCG07G015330' => 'cla', 'COL.COLO4_13698' => 'col', 'COL.COLO4_16659' => 'col', 'COL.COLO4_21986' => 'col', 'COL.COLO4_24049' => 'col', 'COL.COLO4_29061' => 'col', 'COL.COLO4_29075' => 'col', 'COL.COLO4_30094' => 'col', 'Cpa.g.c33689' => 'cpa', 'Cpa.g.sc108.39' => 'cpa', 'Cpa.g.sc108.41' => 'cpa', 'Cpa.g.sc1163.1' => 'cpa', 'Cpa.g.sc4.155' => 'cpa', 'Cpa.g.sc6.194' => 'cpa', 'CsaV3_1G000340' => 'csa', 'CsaV3_1G001400' => 'csa', 'CsaV3_4G002220' => 'csa', 'CsaV3_4G005370' => 'csa', 'CSS0007487' => 'camsi', 'CSS0008066' => 'camsi', 'CSS0009120' => 'camsi', 'CSS0015512' => 'camsi', 'CSS0022409' => 'camsi', 'CSS0025358' => 'camsi', 'CSS0044547' => 'camsi', 'DCAR_013057' => 'dca', 'DCAR_015058' => 'dca', 'DCAR_016027' => 'dca', 'DCAR_017327' => 'dca', 'DCAR_020743' => 'dca', 'DCAR_026157' => 'dca', 'DCAR_032339' => 'dca', 'DCAR_032340' => 'dca', 'Dinv11200' => 'din', 'Dinv11201' => 'din', 'Dinv20631' => 'din', 'Dinv23182' => 'din', 'Dinv33466' => 'din', 'Dinv33583' => 'din', 'Dinv38565' => 'din', 'Duzib068G0200' => 'dzi', 'Duzib147G0132' => 'dzi', 'Duzib147G0635' => 'dzi', 'Duzib205G1670' => 'dzi', 'Duzib251G0606' => 'dzi', 'ECA232G3336' => 'eca', 'ECA232G3763' => 'eca', 'ECA232G4845' => 'eca', 'ECA234G1607' => 'eca', 'ECA246G0932' => 'eca', 'ECA247G0781' => 'eca', 'ECA247G1932' => 'eca', 'ECA247G2079' => 'eca', 'ECA247G3338' => 'eca', 'ECA247G4115' => 'eca', 'EL10Ac3g06552' => 'bvu', 'EL10Ac5g10721' => 'bvu', 'EL10Ac5g10722' => 'bvu', 'EL10Ac5g10723' => 'bvu', 'EL10Ac5g11361' => 'bvu', 'EL10Ac6g13553' => 'bvu', 'EL10As8g23872' => 'bvu', 'Eucgr.B00250' => 'egr', 'Eucgr.B00251' => 'egr', 'Eucgr.B03533' => 'egr', 'Eucgr.I02381' => 'egr', 'Eucgr.K02700' => 'egr', 'FAN02G0174' => 'fan', 'FAN02G3146' => 'fan', 'FAN04G1672' => 'fan', 'FAN04G2273' => 'fan', 'FAN05G2791' => 'fan', 'FAN05G4035' => 'fan', 'FAN07G0834' => 'fan', 'FAN08G1198' => 'fan', 'FAN09G4182' => 'fan', 'FAN12G0496' => 'fan', 'FAN13G1027' => 'fan', 'FAN13G2951' => 'fan', 'FAN14G0705' => 'fan', 'FAN14G0720' => 'fan', 'FAN17G0201' => 'fan', 'FAN17G2665' => 'fan', 'FAN18G1456' => 'fan', 'FAN18G1525' => 'fan', 'FAN18G3500' => 'fan', 'FAN28G2670' => 'fan', 'FvH4_1g12391' => 'fve', 'FvH4_4g23220' => 'fve', 'FvH4_5g08810' => 'fve', 'FvH4_5g28960' => 'fve', 'FvH4_6g42820' => 'fve', 'FvH4_6g51110' => 'fve', 'Glyma.02G051802' => 'gma', 'Glyma.04G185300' => 'gma', 'Glyma.05G202900' => 'gma', 'Glyma.08G010300' => 'gma', 'Glyma.16G131900' => 'gma', 'Glyma.17G087900' => 'gma', 'Gohir.A07G048600' => 'ghi', 'Gohir.A11G179000' => 'ghi', 'Gohir.A12G140900' => 'ghi', 'Gohir.A12G140950' => 'ghi', 'Gohir.A12G191700' => 'ghi', 'Gohir.A13G086300' => 'ghi', 'Gohir.D07G052900' => 'ghi', 'Gohir.D11G186600' => 'ghi', 'Gohir.D12G145575' => 'ghi', 'Gohir.D12G145650' => 'ghi', 'Gohir.D12G145725' => 'ghi', 'Gohir.D12G194050' => 'ghi', 'Gohir.D13G091800' => 'ghi', 'Gorai.001G055900' => 'gra', 'Gorai.007G198400' => 'gra', 'Gorai.008G157000' => 'gra', 'Gorai.008G157100' => 'gra', 'Gorai.008G208700' => 'gra', 'Gorai.010G138700' => 'gra', 'GSVIVG01000977001' => 'vvi', 'GSVIVG01007708001' => 'vvi', 'GSVIVG01008587001' => 'vvi', 'GSVIVG01018849001' => 'vvi', 'GSVIVG01032432001' => 'vvi', 'HanXRQChr02g0034131' => 'han', 'HanXRQChr02g0035981' => 'han', 'HanXRQChr02g0035991' => 'han', 'HanXRQChr05g0155611' => 'han', 'HanXRQChr05g0155621' => 'han', 'HanXRQChr08g0236501' => 'han', 'HanXRQChr09g0261321' => 'han', 'HanXRQChr09g0272081' => 'han', 'HanXRQChr10g0310741' => 'han', 'HanXRQChr11g0325591' => 'han', 'HanXRQChr12g0385691' => 'han', 'HanXRQChr13g0387801' => 'han', 'HanXRQChr15g0463011' => 'han', 'Haze_03826' => 'cav', 'Haze_03827' => 'cav', 'Haze_07183' => 'cav', 'Haze_07537' => 'cav', 'Haze_07539' => 'cav', 'Haze_12461' => 'cav', 'Haze_16115' => 'cav', 'Haze_16808' => 'cav', 'Haze_18531' => 'cav', 'Hma1.2p1_0046F.1_g026700' => 'hma', 'Hma1.2p1_0046F.1_g026710' => 'hma', 'Hma1.2p1_0168F.1_g074340' => 'hma', 'Hma1.2p1_0266F.1_g107030' => 'hma', 'Hma1.2p1_0266F.1_g107060' => 'hma', 'Hma1.2p1_0275F.1_g110510' => 'hma', 'Hma1.2p1_0592F.1_g185490' => 'hma', 'Hma1.2p1_0592F.1_g185500' => 'hma', 'Hma1.2p1_0592F.1_g185510' => 'hma', 'Hma1.2p1_0592F.1_g185520' => 'hma', 'Hma1.2p1_0592F.1_g185530' => 'hma', 'Hma1.2p1_0818F.1_g223450' => 'hma', 'HPP92_009708' => 'vpl', 'HPP92_009793' => 'vpl', 'HPP92_009796' => 'vpl', 'HPP92_009797' => 'vpl', 'HPP92_014940' => 'vpl', 'HPP92_014988' => 'vpl', 'Hund02463' => 'sun', 'Hund02760' => 'sun', 'Hund05071' => 'sun', 'Hund10108' => 'sun', 'Hund11204' => 'sun', 'Hund14016' => 'sun', 'Hund16464' => 'sun', 'Lalb_Chr09g0333391' => 'lal', 'Lalb_Chr11g0070461' => 'lal', 'Lalb_Chr12g0201671' => 'lal', 'Lalb_Chr13g0297161' => 'lal', 'Lj1g0002823' => 'lja', 'Lj3C1074T6' => 'lonja', 'Lj4A212T28' => 'lonja', 'Lj4g0005516' => 'lja', 'Lj4g0013705' => 'lja', 'Lj4g0027865' => 'lja', 'Lj5C92G16' => 'lonja', 'Lj5C92T12' => 'lonja', 'Lj7C596T3' => 'lonja', 'Lj9A446G59' => 'lonja', 'Lj9A482G21' => 'lonja', 'Lsat_1_v5_gn_1_28261' => 'lsa', 'Lsat_1_v5_gn_1_28281' => 'lsa', 'Lsat_1_v5_gn_1_32721' => 'lsa', 'Lsat_1_v5_gn_4_151760' => 'lsa', 'Lsat_1_v5_gn_4_2120' => 'lsa', 'Lsat_1_v5_gn_4_75761' => 'lsa', 'Lsat_1_v5_gn_5_10920' => 'lsa', 'Manes.02G099900' => 'mes', 'Manes.11G096200' => 'mes', 'Manes.12G007200' => 'mes', 'Manes.14G048300' => 'mes', 'Manes.17G114700' => 'mes', 'Mapoly0002s0070' => 'mpo', 'Mapoly0029s0099' => 'mpo', 'MBI07_g24742_MAGBIO' => 'mbi', 'MBI10_g27988_MAGBIO' => 'mbi', 'MBI11_g13057_MAGBIO' => 'mbi', 'MD02G1137200' => 'mdo', 'MD06G1137200' => 'mdo', 'MD07G1122300' => 'mdo', 'MD09G1078200' => 'mdo', 'MD13G1123700' => 'mdo', 'MD14G1151900' => 'mdo', 'MD17G1030900' => 'mdo', 'MD17G1068200' => 'mdo', 'MD17G1068600' => 'mdo', 'Medtr3g077540' => 'mtr', 'Medtr4g105530' => 'mtr', 'Medtr8g076580' => 'mtr', 'Medtr8g076590' => 'mtr', 'Medtr8g096410' => 'mtr', 'MELO3C016411.2' => 'cme', 'MELO3C017780.2' => 'cme', 'MELO3C022560.2' => 'cme', 'MELO3C026187.2' => 'cme', 'MELO3C026286.2' => 'cme', 'MELO3C032854.2' => 'cme', 'Migut.H02495' => 'egut', 'Migut.I00561' => 'egut', 'Migut.K01015' => 'egut', 'Migut.K01016' => 'egut', 'Migut.L00743' => 'egut', 'Migut.L00744' => 'egut', 'Migut.L00746' => 'egut', 'Migut.L00798' => 'egut', 'Migut.L00799' => 'egut', 'Migut.N02096' => 'egut', 'MSTRG.11259' => 'ama', 'MSTRG.23142' => 'ama', 'MSTRG.2499' => 'ama', 'Nitab4.5_0000003g0730' => 'nta', 'Nitab4.5_0000137g0020' => 'nta', 'Nitab4.5_0000721g0210' => 'nta', 'Nitab4.5_0000723g0050' => 'nta', 'Nitab4.5_0000913g0070' => 'nta', 'Nitab4.5_0001332g0040' => 'nta', 'Nitab4.5_0001771g0050' => 'nta', 'Nitab4.5_0001918g0050' => 'nta', 'Nitab4.5_0002686g0030' => 'nta', 'Nitab4.5_0003156g0020' => 'nta', 'Nitab4.5_0003383g0040' => 'nta', 'Nitab4.5_0003918g0010' => 'nta', 'Nitab4.5_0006760g0010' => 'nta', 'Nn1g05981' => 'nnu', 'Nn1g06288' => 'nnu', 'Nn3g16371' => 'nnu', 'Nn3g16786' => 'nnu', 'Nn4g22232' => 'nnu', 'Oeu005144.1' => 'oeu', 'Oeu005145.1' => 'oeu', 'Oeu011348.1' => 'oeu', 'Oeu016415.1' => 'oeu', 'Oeu023501.1' => 'oeu', 'Oeu044473.1' => 'oeu', 'Oeu048892.2' => 'oeu', 'Os01g0549200' => 'osa', 'Os02g0469300' => 'osa', 'Os04g0311100' => 'osa', 'Os06g0474900' => 'osa', 'Os10g0181700' => 'osa', 'Os11g0454800' => 'osa', 'Peaxi162Scf00037g00714' => 'pax', 'Peaxi162Scf00084g01217' => 'pax', 'Peaxi162Scf00257g00217' => 'pax', 'Peaxi162Scf00516g00215' => 'pax', 'Peaxi162Scf00689g00123' => 'pax', 'PGR044G2719' => 'pgr', 'PGR083G1360' => 'pgr', 'PGR102G2849' => 'pgr', 'PGR119G2534' => 'pgr', 'PGSC0003DMG400003538' => 'stu', 'PGSC0003DMG400028138' => 'stu', 'PGSC0003DMG400031732' => 'stu', 'PGSC0003DMG400038165' => 'stu', 'Phvul.002G284600' => 'pvu', 'Phvul.003G258200' => 'pvu', 'Phvul.009G176500' => 'pvu', 'Potri.003G167201' => 'ptr', 'Potri.005G118400' => 'ptr', 'Potri.012G089000' => 'ptr', 'Potri.012G102800' => 'ptr', 'Potri.015G079400' => 'ptr', 'Potri.015G100900' => 'ptr', 'Pp3c14_9810' => 'ppa', 'Pp3c15_10450' => 'ppa', 'Pp3c20_19150' => 'ppa', 'Pp3c23_12740' => 'ppa', 'Pp3c23_6310' => 'ppa', 'Pp3c24_3720' => 'ppa', 'Pp3c27_2580' => 'ppa', 'Pp3c9_8990' => 'ppa', 'PRCOL_00002854' => 'pco', 'Prupe.1G221200' => 'ppe', 'Prupe.3G289000' => 'ppe', 'Prupe.5G147000' => 'ppe', 'Prupe.6G157300' => 'ppe', 'Prupe.7G163400' => 'ppe', 'Psat0s2177g0040' => 'psa', 'Psat3g174760' => 'psa', 'Psat3g192160' => 'psa', 'Psat4g058520' => 'psa', 'Psat4g096840' => 'psa', 'Psat7g037320' => 'psa', 'PSO017G1274' => 'pso', 'PSO017G5166' => 'pso', 'PSO063G4558' => 'pso', 'PSO170G4458' => 'pso', 'PSO170G5005' => 'pso', 'PSO210G6156' => 'pso', 'PSO210G6635' => 'pso', 'PSO210G7397' => 'pso', 'PSO210G7700' => 'pso', 'PSO455G0035' => 'pso', 'PSO455G0180' => 'pso', 'PSO478G4515' => 'pso', 'PSO832G1305' => 'pso', 'PSO832G3489' => 'pso', 'QL02p075247' => 'qlo', 'QL03p051148' => 'qlo', 'QL05p010313' => 'qlo', 'QL06p034627' => 'qlo', 'QL10p001889' => 'qlo', 'QL10p010846' => 'qlo', 'RcHm_v2.0_Chr1g0350621' => 'rch', 'RcHm_v2.0_Chr1g0350641' => 'rch', 'RcHm_v2.0_Chr2g0092891' => 'rch', 'RcHm_v2.0_Chr2g0100251' => 'rch', 'RcHm_v2.0_Chr2g0158661' => 'rch', 'RcHm_v2.0_Chr2g0172741' => 'rch', 'RcHm_v2.0_Chr4g0429571' => 'rch', 'RcHm_v2.0_Chr5g0042471' => 'rch', 'RcHm_v2.0_Chr7g0189451' => 'rch', 'Rhsim08G0052000' => 'rsi', 'Rhsim08G0174400' => 'rsi', 'Rhsim08G0193200' => 'rsi', 'Rhsim10G0214800' => 'rsi', 'Rhsim10G0214900' => 'rsi', 'Rhsim10G0215000' => 'rsi', 'Rhsim12G0022900' => 'rsi', 'Rhsim12G0177500' => 'rsi', 'Rhsim12G0177700' => 'rsi', 'Sabra03G0122600' => 'sbr', 'Sabra05G0097400' => 'sbr', 'Sabra12G0064100' => 'sbr', 'Sabra15G0121300' => 'sbr', 'SalBow2G0642' => 'sbo', 'SalBow5G2667' => 'sbo', 'SalBow5G4873' => 'sbo', 'SalBow8G2395' => 'sbo', 'Sc03g0003290' => 'sci', 'Sc10g0010130' => 'sci', 'Sc22g0003650' => 'sci', 'Sed0001603' => 'sed', 'Sed0004259' => 'sed', 'Sed0006789' => 'sed', 'Sed0011838' => 'sed', 'Sed0012964' => 'sed', 'Sed0016383' => 'sed', 'Sed0019010' => 'sed', 'Sed0020188' => 'sed', 'SEGI_04702' => 'sgi', 'SEGI_17231' => 'sgi', 'SEGI_18877' => 'sgi', 'SEGI_25196' => 'sgi', 'SEGI_25515' => 'sgi', 'SEGI_28445' => 'sgi', 'SEGI_37452' => 'sgi', 'SGA_v2.0_scaffold188G40336' => 'sas', 'SGA_v2.0_scaffold228G43247' => 'sas', 'SGA_v2.0_scaffold280G46853' => 'sas', 'SGA_v2.0_scaffold34G13808' => 'sas', 'SGA_v2.0_scaffold40G15576' => 'sas', 'SGA_v2.0_scaffold611G53188' => 'sas', 'SGA_v2.0_scaffold78G25461' => 'sas', 'SGA_v2.0_scaffold90G27888' => 'sas', 'SHI08601' => 'shi', 'SHI08606' => 'shi', 'SHI17117' => 'shi', 'SHI17119' => 'shi', 'SMO118G0201' => 'smo', 'SMO169G0247' => 'smo', 'SMO176G0006' => 'smo', 'SMO176G0015' => 'smo', 'SMO202G0006' => 'smo', 'SMO240G0050' => 'smo', 'SMO286G0009' => 'smo', 'SMO338G0033' => 'smo', 'SMO356G0533' => 'smo', 'SMO364G0382' => 'smo', 'SMO367G0166' => 'smo', 'SMO367G1098' => 'smo', 'Solyc01g009920.3' => 'sly', 'Solyc01g099300.3' => 'sly', 'Solyc02g084700.3' => 'sly', 'Solyc03g097520.3' => 'sly', 'Solyc06g071580.3' => 'sly', 'Solyc10g081760.3' => 'sly', 'Sopen01g005480' => 'spe', 'Sopen01g042850' => 'spe', 'Sopen02g029370' => 'spe', 'Sopen03g028280' => 'spe', 'Sopen06g027870' => 'spe', 'Sopen10g032270' => 'spe', 'Sp5g18180' => 'spa', 'Sp6g12880' => 'spa', 'Sp6g30850' => 'spa', 'Sp7g22960' => 'spa', 'Sp7g34010' => 'spa', 'SpUn1326_0010' => 'spa', 'TAR371G0242' => 'tar', 'TAR622G0638' => 'tar', 'TAR628G1548' => 'tar', 'TAR629G1079' => 'tar', 'TAR629G3413' => 'tar', 'THA.LOC104804249' => 'tha', 'THA.LOC104808315' => 'tha', 'THA.LOC104809238' => 'tha', 'THA.LOC104825484' => 'tha', 'Thecc.01G025500' => 'tca', 'Thecc.03G015800' => 'tca', 'Thecc.03G018000' => 'tca', 'Thecc.03G134800' => 'tca', 'Thecc.04G014700' => 'tca', 'Thhalv10006991m.g' => 'esa', 'Thhalv10012707m.g' => 'esa', 'Thhalv10015739m.g' => 'esa', 'Thhalv10024553m.g' => 'esa', 'Thhalv10024673m.g' => 'esa', 'Thhalv10029187m.g' => 'esa', 'TPR.G12971' => 'tpr', 'TPR.G29396' => 'tpr', 'TPR.G33376' => 'tpr', 'TPR.G35508' => 'tpr', 'TPR.G35516' => 'tpr', 'TPR.G37317' => 'tpr', 'TPR.G37389' => 'tpr', 'TPR.G37523' => 'tpr', 'TPR.G559' => 'tpr', 'TWI14G0070' => 'twi', 'TWI14G0729' => 'twi', 'TWI18G0596' => 'twi', 'TWI39G0780' => 'twi', 'TWI39G0850' => 'twi', 'TWI73G1052' => 'twi', 'unitig_52.g17485' => 'ugi', 'unitig_61.g26355' => 'ugi', 'vmacro01040' => 'vma', 'vmacro16731' => 'vma', 'vmacro18270' => 'vma', 'vmacro19142' => 'vma', 'vmacro19407' => 'vma', 'vmacro19408' => 'vma', 'vmacro21899' => 'vma', 'vmacro21900' => 'vma', 'vmacro21901' => 'vma', 'VMungo0251G0490' => 'vmu', 'VMungo0251G1748' => 'vmu', 'VMungo1309G0421' => 'vmu', 'Zm00001eb086500' => 'zma', 'Zm00001eb150680' => 'zma', 'Zm00001eb162330' => 'zma', 'Zm00001eb203130' => 'zma', 'Zm00001eb369480' => 'zma', 'Zm00001eb382340' => 'zma', 'Zm00001eb416360' => 'zma' ) $gf_id = 'HOM05D000902' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000902' ) $data_identifier = 'HOM05D000902' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 13, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 10, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 6, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 9, 'hma' => (int) 12, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 4, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 6, 'ppa' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 6, 'rch' => (int) 9, 'rsi' => (int) 9, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 12, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 3, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416360' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000902', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '663', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02470' => 'bna', 'A01p16260' => 'bna', 'A02p01680' => 'bna', 'A03p16600' => 'bna', 'A03p55660' => 'bna', 'A03p64160' => 'bna', 'A03p64170' => 'bna', 'A08p31900' => 'bna', 'A09p59530' => 'bna', 'A10p08230' => 'bna', 'A10p25090' => 'bna', 'Aa31LG3G7100' => 'aar', 'Aa31LG3G7110' => 'aar', 'Aa31LG6G13160' => 'aar', 'Aa31LG7G10770' => 'aar', 'Aa31LG7G3830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2723' => 'aag', 'Actinidia08045' => 'ach', 'Actinidia08888' => 'ach', 'Actinidia18333' => 'ach', 'Actinidia19334' => 'ach', 'Actinidia25552' => 'ach', 'Actinidia26089' => 'ach', 'Actinidia30615' => 'ach', 'Actinidia30616' => 'ach', 'Actinidia33083' => 'ach', 'Actinidia35762' => 'ach', 'Ah.02g110620' => 'amhyb', 'Ah.11g046390' => 'amhyb', 'AL1G31670' => 'aly', 'AL6G23730' => 'aly', 'AL7G14740' => 'aly', 'AL7G14750' => 'aly', 'AL7G14760' => 'aly', 'AL7G28220' => 'aly', 'AL8G24940' => 'aly', 'Aqoxy3G01665' => 'aox', 'Aqoxy3G02853' => 'aox', 'Aqoxy5G01513' => 'aox', 'Aqoxy5G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8SKA4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ75LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKDA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0LJZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7REX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZP4YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWX7I5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2QKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS0L9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPCD8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q161UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC7XCF' => 'arhy', 'AT1G19100' => 'ath', 'AT4G24970' => 'ath', 'AT4G36270' => 'ath', 'AT4G36280' => 'ath', 'AT4G36290' => 'ath', 'AT5G13130' => 'ath', 'AT5G50780' => 'ath', 'ATR0582G266' => 'atr', 'ATR0661G195' => 'atr', 'ATR1152G031' => 'atr', 'Atru.chr11.2382' => 'acertr', 'Atru.chr12.2337' => 'acertr', 'Atru.chr3.744' => 'acertr', 'Atru.chr6.1870' => 'acertr', 'Atru.chr9.2515' => 'acertr', 'AUR62004120' => 'cqu', 'AUR62005667' => 'cqu', 'AUR62007634' => 'cqu', 'AUR62008186' => 'cqu', 'AUR62008187' => 'cqu', 'AUR62008188' => 'cqu', 'AUR62027954' => 'cqu', 'AUR62028766' => 'cqu', 'AUR62028767' => 'cqu', 'AUR62028768' => 'cqu', 'AUR62028886' => 'cqu', 'AUR62029563' => 'cqu', 'AUR62038832' => 'cqu', 'BcaB01g04149' => 'bca', 'BcaB03g12940' => 'bca', 'BcaB03g13090' => 'bca', 'BcaB03g14466' => 'bca', 'BcaB05g24035' => 'bca', 'BcaC01g06050' => 'bca', 'BcaC04g19148' => 'bca', 'BcaC04g20761' => 'bca', 'BcaC06g32845' => 'bca', 'BcaC07g41274' => 'bca', 'BcaC09g50827' => 'bca', 'BcaNung00741' => 'bca', 'BcaNung00742' => 'bca', 'BcaNung01859' => 'bca', 'BcaNung03985' => 'bca', 'BcaNung03989' => 'bca', 'BcaNung05661' => 'bca', 'BolC1t00257H' => 'bol', 'BolC1t01956H' => 'bol', 'BolC2t06534H' => 'bol', 'BolC3t14334H' => 'bol', 'BolC5t30451H' => 'bol', 'BolC7t45880H' => 'bol', 'BolC7t46586H' => 'bol', 'BolC8t49301H' => 'bol', 'BolC8t51837H' => 'bol', 'BolC9t56822H' => 'bol', 'BolC9t59235H' => 'bol', 'BraA01t00234Z' => 'bra', 'BraA01t01563Z' => 'bra', 'BraA02t05147Z' => 'bra', 'BraA03t10947Z' => 'bra', 'BraA03t14633Z' => 'bra', 'BraA08t35112Z' => 'bra', 'BraA09t41330Z' => 'bra', 'BraA10t44570Z' => 'bra', 'C01p02670' => 'bna', 'C01p20260' => 'bna', 'C02p05890' => 'bna', 'C03p19530' => 'bna', 'C05p17470' => 'bna', 'C07p53900' => 'bna', 'C07p61630' => 'bna', 'C08p16800' => 'bna', 'C08p42810' => 'bna', 'C09p39480' => 'bna', 'C09p63980' => 'bna', 'CAN.G1001.7' => 'can', 'CAN.G1034.55' => 'can', 'CAN.G143.7' => 'can', 'CAN.G3340.1' => 'can', 'CAN.G358.19' => 'can', 'CAN.G373.2' => 'can', 'CAN.G674.16' => 'can', 'CAN.G674.17' => 'can', 'CAN.G674.18' => 'can', 'CAN.G732.2' => 'can', 'CAN.G732.3' => 'can', 'CAN.G993.39' => 'can', 'CANSAT01G2052' => 'cansat', 'CANSAT80G0070' => 'cansat', 'CANSAT80G0483' => 'cansat', 'CANSAT80G0625' => 'cansat', 'CARHR019690' => 'chi', 'CARHR080280' => 'chi', 'CARHR152750' => 'chi', 'CARHR152760' => 'chi', 'CARHR152770' => 'chi', 'CARHR200340' => 'chi', 'CARHR232370' => 'chi', 'CARHR244670' => 'chi', 'CARHR244680' => 'chi', 'CARHR257520' => 'chi', 'Carub.0001s1872' => 'cru', 'Carub.0006s1130' => 'cru', 'Carub.0007s0396' => 'cru', 'Carub.0007s0397' => 'cru', 'Carub.0007s1608' => 'cru', 'Carub.0008s1068' => 'cru', 'Carub.0008s1077' => 'cru', 'Ca_16158_v3' => 'car', 'Ca_17571_v3' => 'car', 'Ca_21936_v3' => 'car', 'Ca_22350_v3' => 'car', 'CBR_g22445' => 'cbr', 'CBR_g26290' => 'cbr', 'Cc04_g09610' => 'ccan', 'Cc04_g12280' => 'ccan', 'Cc07_g10230' => 'ccan', 'CDE02G0093' => 'cde', 'CDE02G0701' => 'cde', 'CDE04G1050' => 'cde', 'CDE05G1833' => 'cde', 'CDE05G3058' => 'cde', 'CDE05G3380' => 'cde', 'CDE06G0536' => 'cde', 'Cfa006923' => 'cfa', 'Cfa009402' => 'cfa', 'Cfa018751' => 'cfa', 'Cfa019164' => 'cfa', 'Cfa022935' => 'cfa', 'Ciclev10019081m.g' => 'ccl', 'Ciclev10025076m.g' => 'ccl', 'Ciclev10030712m.g' => 'ccl', 'Ciclev10033760m.g' => 'ccl', 'CiPaw.05G105600' => 'cil', 'CiPaw.08G136700' => 'cil', 'CiPaw.11G003900' => 'cil', 'CiPaw.11G023700' => 'cil', 'CiPaw.12G003700' => 'cil', 'ClCG06G017100' => 'cla', 'ClCG06G018110' => 'cla', 'ClCG07G008800' => 'cla', 'ClCG07G015330' => 'cla', 'COL.COLO4_13698' => 'col', 'COL.COLO4_16659' => 'col', 'COL.COLO4_21986' => 'col', 'COL.COLO4_24049' => 'col', 'COL.COLO4_29061' => 'col', 'COL.COLO4_29075' => 'col', 'COL.COLO4_30094' => 'col', 'Cpa.g.c33689' => 'cpa', 'Cpa.g.sc108.39' => 'cpa', 'Cpa.g.sc108.41' => 'cpa', 'Cpa.g.sc1163.1' => 'cpa', 'Cpa.g.sc4.155' => 'cpa', 'Cpa.g.sc6.194' => 'cpa', 'CsaV3_1G000340' => 'csa', 'CsaV3_1G001400' => 'csa', 'CsaV3_4G002220' => 'csa', 'CsaV3_4G005370' => 'csa', 'CSS0007487' => 'camsi', 'CSS0008066' => 'camsi', 'CSS0009120' => 'camsi', 'CSS0015512' => 'camsi', 'CSS0022409' => 'camsi', 'CSS0025358' => 'camsi', 'CSS0044547' => 'camsi', 'DCAR_013057' => 'dca', 'DCAR_015058' => 'dca', 'DCAR_016027' => 'dca', 'DCAR_017327' => 'dca', 'DCAR_020743' => 'dca', 'DCAR_026157' => 'dca', 'DCAR_032339' => 'dca', 'DCAR_032340' => 'dca', 'Dinv11200' => 'din', 'Dinv11201' => 'din', 'Dinv20631' => 'din', 'Dinv23182' => 'din', 'Dinv33466' => 'din', 'Dinv33583' => 'din', 'Dinv38565' => 'din', 'Duzib068G0200' => 'dzi', 'Duzib147G0132' => 'dzi', 'Duzib147G0635' => 'dzi', 'Duzib205G1670' => 'dzi', 'Duzib251G0606' => 'dzi', 'ECA232G3336' => 'eca', 'ECA232G3763' => 'eca', 'ECA232G4845' => 'eca', 'ECA234G1607' => 'eca', 'ECA246G0932' => 'eca', 'ECA247G0781' => 'eca', 'ECA247G1932' => 'eca', 'ECA247G2079' => 'eca', 'ECA247G3338' => 'eca', 'ECA247G4115' => 'eca', 'EL10Ac3g06552' => 'bvu', 'EL10Ac5g10721' => 'bvu', 'EL10Ac5g10722' => 'bvu', 'EL10Ac5g10723' => 'bvu', 'EL10Ac5g11361' => 'bvu', 'EL10Ac6g13553' => 'bvu', 'EL10As8g23872' => 'bvu', 'Eucgr.B00250' => 'egr', 'Eucgr.B00251' => 'egr', 'Eucgr.B03533' => 'egr', 'Eucgr.I02381' => 'egr', 'Eucgr.K02700' => 'egr', 'FAN02G0174' => 'fan', 'FAN02G3146' => 'fan', 'FAN04G1672' => 'fan', 'FAN04G2273' => 'fan', 'FAN05G2791' => 'fan', 'FAN05G4035' => 'fan', 'FAN07G0834' => 'fan', 'FAN08G1198' => 'fan', 'FAN09G4182' => 'fan', 'FAN12G0496' => 'fan', 'FAN13G1027' => 'fan', 'FAN13G2951' => 'fan', 'FAN14G0705' => 'fan', 'FAN14G0720' => 'fan', 'FAN17G0201' => 'fan', 'FAN17G2665' => 'fan', 'FAN18G1456' => 'fan', 'FAN18G1525' => 'fan', 'FAN18G3500' => 'fan', 'FAN28G2670' => 'fan', 'FvH4_1g12391' => 'fve', 'FvH4_4g23220' => 'fve', 'FvH4_5g08810' => 'fve', 'FvH4_5g28960' => 'fve', 'FvH4_6g42820' => 'fve', 'FvH4_6g51110' => 'fve', 'Glyma.02G051802' => 'gma', 'Glyma.04G185300' => 'gma', 'Glyma.05G202900' => 'gma', 'Glyma.08G010300' => 'gma', 'Glyma.16G131900' => 'gma', 'Glyma.17G087900' => 'gma', 'Gohir.A07G048600' => 'ghi', 'Gohir.A11G179000' => 'ghi', 'Gohir.A12G140900' => 'ghi', 'Gohir.A12G140950' => 'ghi', 'Gohir.A12G191700' => 'ghi', 'Gohir.A13G086300' => 'ghi', 'Gohir.D07G052900' => 'ghi', 'Gohir.D11G186600' => 'ghi', 'Gohir.D12G145575' => 'ghi', 'Gohir.D12G145650' => 'ghi', 'Gohir.D12G145725' => 'ghi', 'Gohir.D12G194050' => 'ghi', 'Gohir.D13G091800' => 'ghi', 'Gorai.001G055900' => 'gra', 'Gorai.007G198400' => 'gra', 'Gorai.008G157000' => 'gra', 'Gorai.008G157100' => 'gra', 'Gorai.008G208700' => 'gra', 'Gorai.010G138700' => 'gra', 'GSVIVG01000977001' => 'vvi', 'GSVIVG01007708001' => 'vvi', 'GSVIVG01008587001' => 'vvi', 'GSVIVG01018849001' => 'vvi', 'GSVIVG01032432001' => 'vvi', 'HanXRQChr02g0034131' => 'han', 'HanXRQChr02g0035981' => 'han', 'HanXRQChr02g0035991' => 'han', 'HanXRQChr05g0155611' => 'han', 'HanXRQChr05g0155621' => 'han', 'HanXRQChr08g0236501' => 'han', 'HanXRQChr09g0261321' => 'han', 'HanXRQChr09g0272081' => 'han', 'HanXRQChr10g0310741' => 'han', 'HanXRQChr11g0325591' => 'han', 'HanXRQChr12g0385691' => 'han', 'HanXRQChr13g0387801' => 'han', 'HanXRQChr15g0463011' => 'han', 'Haze_03826' => 'cav', 'Haze_03827' => 'cav', 'Haze_07183' => 'cav', 'Haze_07537' => 'cav', 'Haze_07539' => 'cav', 'Haze_12461' => 'cav', 'Haze_16115' => 'cav', 'Haze_16808' => 'cav', 'Haze_18531' => 'cav', 'Hma1.2p1_0046F.1_g026700' => 'hma', 'Hma1.2p1_0046F.1_g026710' => 'hma', 'Hma1.2p1_0168F.1_g074340' => 'hma', 'Hma1.2p1_0266F.1_g107030' => 'hma', 'Hma1.2p1_0266F.1_g107060' => 'hma', 'Hma1.2p1_0275F.1_g110510' => 'hma', 'Hma1.2p1_0592F.1_g185490' => 'hma', 'Hma1.2p1_0592F.1_g185500' => 'hma', 'Hma1.2p1_0592F.1_g185510' => 'hma', 'Hma1.2p1_0592F.1_g185520' => 'hma', 'Hma1.2p1_0592F.1_g185530' => 'hma', 'Hma1.2p1_0818F.1_g223450' => 'hma', 'HPP92_009708' => 'vpl', 'HPP92_009793' => 'vpl', 'HPP92_009796' => 'vpl', 'HPP92_009797' => 'vpl', 'HPP92_014940' => 'vpl', 'HPP92_014988' => 'vpl', 'Hund02463' => 'sun', 'Hund02760' => 'sun', 'Hund05071' => 'sun', 'Hund10108' => 'sun', 'Hund11204' => 'sun', 'Hund14016' => 'sun', 'Hund16464' => 'sun', 'Lalb_Chr09g0333391' => 'lal', 'Lalb_Chr11g0070461' => 'lal', 'Lalb_Chr12g0201671' => 'lal', 'Lalb_Chr13g0297161' => 'lal', 'Lj1g0002823' => 'lja', 'Lj3C1074T6' => 'lonja', 'Lj4A212T28' => 'lonja', 'Lj4g0005516' => 'lja', 'Lj4g0013705' => 'lja', 'Lj4g0027865' => 'lja', 'Lj5C92G16' => 'lonja', 'Lj5C92T12' => 'lonja', 'Lj7C596T3' => 'lonja', 'Lj9A446G59' => 'lonja', 'Lj9A482G21' => 'lonja', 'Lsat_1_v5_gn_1_28261' => 'lsa', 'Lsat_1_v5_gn_1_28281' => 'lsa', 'Lsat_1_v5_gn_1_32721' => 'lsa', 'Lsat_1_v5_gn_4_151760' => 'lsa', 'Lsat_1_v5_gn_4_2120' => 'lsa', 'Lsat_1_v5_gn_4_75761' => 'lsa', 'Lsat_1_v5_gn_5_10920' => 'lsa', 'Manes.02G099900' => 'mes', 'Manes.11G096200' => 'mes', 'Manes.12G007200' => 'mes', 'Manes.14G048300' => 'mes', 'Manes.17G114700' => 'mes', 'Mapoly0002s0070' => 'mpo', 'Mapoly0029s0099' => 'mpo', 'MBI07_g24742_MAGBIO' => 'mbi', 'MBI10_g27988_MAGBIO' => 'mbi', 'MBI11_g13057_MAGBIO' => 'mbi', 'MD02G1137200' => 'mdo', 'MD06G1137200' => 'mdo', 'MD07G1122300' => 'mdo', 'MD09G1078200' => 'mdo', 'MD13G1123700' => 'mdo', 'MD14G1151900' => 'mdo', 'MD17G1030900' => 'mdo', 'MD17G1068200' => 'mdo', 'MD17G1068600' => 'mdo', 'Medtr3g077540' => 'mtr', 'Medtr4g105530' => 'mtr', 'Medtr8g076580' => 'mtr', 'Medtr8g076590' => 'mtr', 'Medtr8g096410' => 'mtr', 'MELO3C016411.2' => 'cme', 'MELO3C017780.2' => 'cme', 'MELO3C022560.2' => 'cme', 'MELO3C026187.2' => 'cme', 'MELO3C026286.2' => 'cme', 'MELO3C032854.2' => 'cme', 'Migut.H02495' => 'egut', 'Migut.I00561' => 'egut', 'Migut.K01015' => 'egut', 'Migut.K01016' => 'egut', 'Migut.L00743' => 'egut', 'Migut.L00744' => 'egut', 'Migut.L00746' => 'egut', 'Migut.L00798' => 'egut', 'Migut.L00799' => 'egut', 'Migut.N02096' => 'egut', 'MSTRG.11259' => 'ama', 'MSTRG.23142' => 'ama', 'MSTRG.2499' => 'ama', 'Nitab4.5_0000003g0730' => 'nta', 'Nitab4.5_0000137g0020' => 'nta', 'Nitab4.5_0000721g0210' => 'nta', 'Nitab4.5_0000723g0050' => 'nta', 'Nitab4.5_0000913g0070' => 'nta', 'Nitab4.5_0001332g0040' => 'nta', 'Nitab4.5_0001771g0050' => 'nta', 'Nitab4.5_0001918g0050' => 'nta', 'Nitab4.5_0002686g0030' => 'nta', 'Nitab4.5_0003156g0020' => 'nta', 'Nitab4.5_0003383g0040' => 'nta', 'Nitab4.5_0003918g0010' => 'nta', 'Nitab4.5_0006760g0010' => 'nta', 'Nn1g05981' => 'nnu', 'Nn1g06288' => 'nnu', 'Nn3g16371' => 'nnu', 'Nn3g16786' => 'nnu', 'Nn4g22232' => 'nnu', 'Oeu005144.1' => 'oeu', 'Oeu005145.1' => 'oeu', 'Oeu011348.1' => 'oeu', 'Oeu016415.1' => 'oeu', 'Oeu023501.1' => 'oeu', 'Oeu044473.1' => 'oeu', 'Oeu048892.2' => 'oeu', 'Os01g0549200' => 'osa', 'Os02g0469300' => 'osa', 'Os04g0311100' => 'osa', 'Os06g0474900' => 'osa', 'Os10g0181700' => 'osa', 'Os11g0454800' => 'osa', 'Peaxi162Scf00037g00714' => 'pax', 'Peaxi162Scf00084g01217' => 'pax', 'Peaxi162Scf00257g00217' => 'pax', 'Peaxi162Scf00516g00215' => 'pax', 'Peaxi162Scf00689g00123' => 'pax', 'PGR044G2719' => 'pgr', 'PGR083G1360' => 'pgr', 'PGR102G2849' => 'pgr', 'PGR119G2534' => 'pgr', 'PGSC0003DMG400003538' => 'stu', 'PGSC0003DMG400028138' => 'stu', 'PGSC0003DMG400031732' => 'stu', 'PGSC0003DMG400038165' => 'stu', 'Phvul.002G284600' => 'pvu', 'Phvul.003G258200' => 'pvu', 'Phvul.009G176500' => 'pvu', 'Potri.003G167201' => 'ptr', 'Potri.005G118400' => 'ptr', 'Potri.012G089000' => 'ptr', 'Potri.012G102800' => 'ptr', 'Potri.015G079400' => 'ptr', 'Potri.015G100900' => 'ptr', 'Pp3c14_9810' => 'ppa', 'Pp3c15_10450' => 'ppa', 'Pp3c20_19150' => 'ppa', 'Pp3c23_12740' => 'ppa', 'Pp3c23_6310' => 'ppa', 'Pp3c24_3720' => 'ppa', 'Pp3c27_2580' => 'ppa', 'Pp3c9_8990' => 'ppa', 'PRCOL_00002854' => 'pco', 'Prupe.1G221200' => 'ppe', 'Prupe.3G289000' => 'ppe', 'Prupe.5G147000' => 'ppe', 'Prupe.6G157300' => 'ppe', 'Prupe.7G163400' => 'ppe', 'Psat0s2177g0040' => 'psa', 'Psat3g174760' => 'psa', 'Psat3g192160' => 'psa', 'Psat4g058520' => 'psa', 'Psat4g096840' => 'psa', 'Psat7g037320' => 'psa', 'PSO017G1274' => 'pso', 'PSO017G5166' => 'pso', 'PSO063G4558' => 'pso', 'PSO170G4458' => 'pso', 'PSO170G5005' => 'pso', 'PSO210G6156' => 'pso', 'PSO210G6635' => 'pso', 'PSO210G7397' => 'pso', 'PSO210G7700' => 'pso', 'PSO455G0035' => 'pso', 'PSO455G0180' => 'pso', 'PSO478G4515' => 'pso', 'PSO832G1305' => 'pso', 'PSO832G3489' => 'pso', 'QL02p075247' => 'qlo', 'QL03p051148' => 'qlo', 'QL05p010313' => 'qlo', 'QL06p034627' => 'qlo', 'QL10p001889' => 'qlo', 'QL10p010846' => 'qlo', 'RcHm_v2.0_Chr1g0350621' => 'rch', 'RcHm_v2.0_Chr1g0350641' => 'rch', 'RcHm_v2.0_Chr2g0092891' => 'rch', 'RcHm_v2.0_Chr2g0100251' => 'rch', 'RcHm_v2.0_Chr2g0158661' => 'rch', 'RcHm_v2.0_Chr2g0172741' => 'rch', 'RcHm_v2.0_Chr4g0429571' => 'rch', 'RcHm_v2.0_Chr5g0042471' => 'rch', 'RcHm_v2.0_Chr7g0189451' => 'rch', 'Rhsim08G0052000' => 'rsi', 'Rhsim08G0174400' => 'rsi', 'Rhsim08G0193200' => 'rsi', 'Rhsim10G0214800' => 'rsi', 'Rhsim10G0214900' => 'rsi', 'Rhsim10G0215000' => 'rsi', 'Rhsim12G0022900' => 'rsi', 'Rhsim12G0177500' => 'rsi', 'Rhsim12G0177700' => 'rsi', 'Sabra03G0122600' => 'sbr', 'Sabra05G0097400' => 'sbr', 'Sabra12G0064100' => 'sbr', 'Sabra15G0121300' => 'sbr', 'SalBow2G0642' => 'sbo', 'SalBow5G2667' => 'sbo', 'SalBow5G4873' => 'sbo', 'SalBow8G2395' => 'sbo', 'Sc03g0003290' => 'sci', 'Sc10g0010130' => 'sci', 'Sc22g0003650' => 'sci', 'Sed0001603' => 'sed', 'Sed0004259' => 'sed', 'Sed0006789' => 'sed', 'Sed0011838' => 'sed', 'Sed0012964' => 'sed', 'Sed0016383' => 'sed', 'Sed0019010' => 'sed', 'Sed0020188' => 'sed', 'SEGI_04702' => 'sgi', 'SEGI_17231' => 'sgi', 'SEGI_18877' => 'sgi', 'SEGI_25196' => 'sgi', 'SEGI_25515' => 'sgi', 'SEGI_28445' => 'sgi', 'SEGI_37452' => 'sgi', 'SGA_v2.0_scaffold188G40336' => 'sas', 'SGA_v2.0_scaffold228G43247' => 'sas', 'SGA_v2.0_scaffold280G46853' => 'sas', 'SGA_v2.0_scaffold34G13808' => 'sas', 'SGA_v2.0_scaffold40G15576' => 'sas', 'SGA_v2.0_scaffold611G53188' => 'sas', 'SGA_v2.0_scaffold78G25461' => 'sas', 'SGA_v2.0_scaffold90G27888' => 'sas', 'SHI08601' => 'shi', 'SHI08606' => 'shi', 'SHI17117' => 'shi', 'SHI17119' => 'shi', 'SMO118G0201' => 'smo', 'SMO169G0247' => 'smo', 'SMO176G0006' => 'smo', 'SMO176G0015' => 'smo', 'SMO202G0006' => 'smo', 'SMO240G0050' => 'smo', 'SMO286G0009' => 'smo', 'SMO338G0033' => 'smo', 'SMO356G0533' => 'smo', 'SMO364G0382' => 'smo', 'SMO367G0166' => 'smo', 'SMO367G1098' => 'smo', 'Solyc01g009920.3' => 'sly', 'Solyc01g099300.3' => 'sly', 'Solyc02g084700.3' => 'sly', 'Solyc03g097520.3' => 'sly', 'Solyc06g071580.3' => 'sly', 'Solyc10g081760.3' => 'sly', 'Sopen01g005480' => 'spe', 'Sopen01g042850' => 'spe', 'Sopen02g029370' => 'spe', 'Sopen03g028280' => 'spe', 'Sopen06g027870' => 'spe', 'Sopen10g032270' => 'spe', 'Sp5g18180' => 'spa', 'Sp6g12880' => 'spa', 'Sp6g30850' => 'spa', 'Sp7g22960' => 'spa', 'Sp7g34010' => 'spa', 'SpUn1326_0010' => 'spa', 'TAR371G0242' => 'tar', 'TAR622G0638' => 'tar', 'TAR628G1548' => 'tar', 'TAR629G1079' => 'tar', 'TAR629G3413' => 'tar', 'THA.LOC104804249' => 'tha', 'THA.LOC104808315' => 'tha', 'THA.LOC104809238' => 'tha', 'THA.LOC104825484' => 'tha', 'Thecc.01G025500' => 'tca', 'Thecc.03G015800' => 'tca', 'Thecc.03G018000' => 'tca', 'Thecc.03G134800' => 'tca', 'Thecc.04G014700' => 'tca', 'Thhalv10006991m.g' => 'esa', 'Thhalv10012707m.g' => 'esa', 'Thhalv10015739m.g' => 'esa', 'Thhalv10024553m.g' => 'esa', 'Thhalv10024673m.g' => 'esa', 'Thhalv10029187m.g' => 'esa', 'TPR.G12971' => 'tpr', 'TPR.G29396' => 'tpr', 'TPR.G33376' => 'tpr', 'TPR.G35508' => 'tpr', 'TPR.G35516' => 'tpr', 'TPR.G37317' => 'tpr', 'TPR.G37389' => 'tpr', 'TPR.G37523' => 'tpr', 'TPR.G559' => 'tpr', 'TWI14G0070' => 'twi', 'TWI14G0729' => 'twi', 'TWI18G0596' => 'twi', 'TWI39G0780' => 'twi', 'TWI39G0850' => 'twi', 'TWI73G1052' => 'twi', 'unitig_52.g17485' => 'ugi', 'unitig_61.g26355' => 'ugi', 'vmacro01040' => 'vma', 'vmacro16731' => 'vma', 'vmacro18270' => 'vma', 'vmacro19142' => 'vma', 'vmacro19407' => 'vma', 'vmacro19408' => 'vma', 'vmacro21899' => 'vma', 'vmacro21900' => 'vma', 'vmacro21901' => 'vma', 'VMungo0251G0490' => 'vmu', 'VMungo0251G1748' => 'vmu', 'VMungo1309G0421' => 'vmu', 'Zm00001eb086500' => 'zma', 'Zm00001eb150680' => 'zma', 'Zm00001eb162330' => 'zma', 'Zm00001eb203130' => 'zma', 'Zm00001eb369480' => 'zma', 'Zm00001eb382340' => 'zma', 'Zm00001eb416360' => 'zma' ), 'gf_id' => 'HOM05D000902', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000902' ), 'data_identifier' => 'HOM05D000902', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000902', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '663', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02470' => 'bna', 'A01p16260' => 'bna', 'A02p01680' => 'bna', 'A03p16600' => 'bna', 'A03p55660' => 'bna', 'A03p64160' => 'bna', 'A03p64170' => 'bna', 'A08p31900' => 'bna', 'A09p59530' => 'bna', 'A10p08230' => 'bna', 'A10p25090' => 'bna', 'Aa31LG3G7100' => 'aar', 'Aa31LG3G7110' => 'aar', 'Aa31LG6G13160' => 'aar', 'Aa31LG7G10770' => 'aar', 'Aa31LG7G3830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2723' => 'aag', 'Actinidia08045' => 'ach', 'Actinidia08888' => 'ach', 'Actinidia18333' => 'ach', 'Actinidia19334' => 'ach', 'Actinidia25552' => 'ach', 'Actinidia26089' => 'ach', 'Actinidia30615' => 'ach', 'Actinidia30616' => 'ach', 'Actinidia33083' => 'ach', 'Actinidia35762' => 'ach', 'Ah.02g110620' => 'amhyb', 'Ah.11g046390' => 'amhyb', 'AL1G31670' => 'aly', 'AL6G23730' => 'aly', 'AL7G14740' => 'aly', 'AL7G14750' => 'aly', 'AL7G14760' => 'aly', 'AL7G28220' => 'aly', 'AL8G24940' => 'aly', 'Aqoxy3G01665' => 'aox', 'Aqoxy3G02853' => 'aox', 'Aqoxy5G01513' => 'aox', 'Aqoxy5G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8SKA4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ75LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKDA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0LJZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7REX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZP4YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWX7I5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2QKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS0L9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPCD8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q161UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC7XCF' => 'arhy', 'AT1G19100' => 'ath', 'AT4G24970' => 'ath', 'AT4G36270' => 'ath', 'AT4G36280' => 'ath', 'AT4G36290' => 'ath', 'AT5G13130' => 'ath', 'AT5G50780' => 'ath', 'ATR0582G266' => 'atr', 'ATR0661G195' => 'atr', 'ATR1152G031' => 'atr', 'Atru.chr11.2382' => 'acertr', 'Atru.chr12.2337' => 'acertr', 'Atru.chr3.744' => 'acertr', 'Atru.chr6.1870' => 'acertr', 'Atru.chr9.2515' => 'acertr', 'AUR62004120' => 'cqu', 'AUR62005667' => 'cqu', 'AUR62007634' => 'cqu', 'AUR62008186' => 'cqu', 'AUR62008187' => 'cqu', 'AUR62008188' => 'cqu', 'AUR62027954' => 'cqu', 'AUR62028766' => 'cqu', 'AUR62028767' => 'cqu', 'AUR62028768' => 'cqu', 'AUR62028886' => 'cqu', 'AUR62029563' => 'cqu', 'AUR62038832' => 'cqu', 'BcaB01g04149' => 'bca', 'BcaB03g12940' => 'bca', 'BcaB03g13090' => 'bca', 'BcaB03g14466' => 'bca', 'BcaB05g24035' => 'bca', 'BcaC01g06050' => 'bca', 'BcaC04g19148' => 'bca', 'BcaC04g20761' => 'bca', 'BcaC06g32845' => 'bca', 'BcaC07g41274' => 'bca', 'BcaC09g50827' => 'bca', 'BcaNung00741' => 'bca', 'BcaNung00742' => 'bca', 'BcaNung01859' => 'bca', 'BcaNung03985' => 'bca', 'BcaNung03989' => 'bca', 'BcaNung05661' => 'bca', 'BolC1t00257H' => 'bol', 'BolC1t01956H' => 'bol', 'BolC2t06534H' => 'bol', 'BolC3t14334H' => 'bol', 'BolC5t30451H' => 'bol', 'BolC7t45880H' => 'bol', 'BolC7t46586H' => 'bol', 'BolC8t49301H' => 'bol', 'BolC8t51837H' => 'bol', 'BolC9t56822H' => 'bol', 'BolC9t59235H' => 'bol', 'BraA01t00234Z' => 'bra', 'BraA01t01563Z' => 'bra', 'BraA02t05147Z' => 'bra', 'BraA03t10947Z' => 'bra', 'BraA03t14633Z' => 'bra', 'BraA08t35112Z' => 'bra', 'BraA09t41330Z' => 'bra', 'BraA10t44570Z' => 'bra', 'C01p02670' => 'bna', 'C01p20260' => 'bna', 'C02p05890' => 'bna', 'C03p19530' => 'bna', 'C05p17470' => 'bna', 'C07p53900' => 'bna', 'C07p61630' => 'bna', 'C08p16800' => 'bna', 'C08p42810' => 'bna', 'C09p39480' => 'bna', 'C09p63980' => 'bna', 'CAN.G1001.7' => 'can', 'CAN.G1034.55' => 'can', 'CAN.G143.7' => 'can', 'CAN.G3340.1' => 'can', 'CAN.G358.19' => 'can', 'CAN.G373.2' => 'can', 'CAN.G674.16' => 'can', 'CAN.G674.17' => 'can', 'CAN.G674.18' => 'can', 'CAN.G732.2' => 'can', 'CAN.G732.3' => 'can', 'CAN.G993.39' => 'can', 'CANSAT01G2052' => 'cansat', 'CANSAT80G0070' => 'cansat', 'CANSAT80G0483' => 'cansat', 'CANSAT80G0625' => 'cansat', 'CARHR019690' => 'chi', 'CARHR080280' => 'chi', 'CARHR152750' => 'chi', 'CARHR152760' => 'chi', 'CARHR152770' => 'chi', 'CARHR200340' => 'chi', 'CARHR232370' => 'chi', 'CARHR244670' => 'chi', 'CARHR244680' => 'chi', 'CARHR257520' => 'chi', 'Carub.0001s1872' => 'cru', 'Carub.0006s1130' => 'cru', 'Carub.0007s0396' => 'cru', 'Carub.0007s0397' => 'cru', 'Carub.0007s1608' => 'cru', 'Carub.0008s1068' => 'cru', 'Carub.0008s1077' => 'cru', 'Ca_16158_v3' => 'car', 'Ca_17571_v3' => 'car', 'Ca_21936_v3' => 'car', 'Ca_22350_v3' => 'car', 'CBR_g22445' => 'cbr', 'CBR_g26290' => 'cbr', 'Cc04_g09610' => 'ccan', 'Cc04_g12280' => 'ccan', 'Cc07_g10230' => 'ccan', 'CDE02G0093' => 'cde', 'CDE02G0701' => 'cde', 'CDE04G1050' => 'cde', 'CDE05G1833' => 'cde', 'CDE05G3058' => 'cde', 'CDE05G3380' => 'cde', 'CDE06G0536' => 'cde', 'Cfa006923' => 'cfa', 'Cfa009402' => 'cfa', 'Cfa018751' => 'cfa', 'Cfa019164' => 'cfa', 'Cfa022935' => 'cfa', 'Ciclev10019081m.g' => 'ccl', 'Ciclev10025076m.g' => 'ccl', 'Ciclev10030712m.g' => 'ccl', 'Ciclev10033760m.g' => 'ccl', 'CiPaw.05G105600' => 'cil', 'CiPaw.08G136700' => 'cil', 'CiPaw.11G003900' => 'cil', 'CiPaw.11G023700' => 'cil', 'CiPaw.12G003700' => 'cil', 'ClCG06G017100' => 'cla', 'ClCG06G018110' => 'cla', 'ClCG07G008800' => 'cla', 'ClCG07G015330' => 'cla', 'COL.COLO4_13698' => 'col', 'COL.COLO4_16659' => 'col', 'COL.COLO4_21986' => 'col', 'COL.COLO4_24049' => 'col', 'COL.COLO4_29061' => 'col', 'COL.COLO4_29075' => 'col', 'COL.COLO4_30094' => 'col', 'Cpa.g.c33689' => 'cpa', 'Cpa.g.sc108.39' => 'cpa', 'Cpa.g.sc108.41' => 'cpa', 'Cpa.g.sc1163.1' => 'cpa', 'Cpa.g.sc4.155' => 'cpa', 'Cpa.g.sc6.194' => 'cpa', 'CsaV3_1G000340' => 'csa', 'CsaV3_1G001400' => 'csa', 'CsaV3_4G002220' => 'csa', 'CsaV3_4G005370' => 'csa', 'CSS0007487' => 'camsi', 'CSS0008066' => 'camsi', 'CSS0009120' => 'camsi', 'CSS0015512' => 'camsi', 'CSS0022409' => 'camsi', 'CSS0025358' => 'camsi', 'CSS0044547' => 'camsi', 'DCAR_013057' => 'dca', 'DCAR_015058' => 'dca', 'DCAR_016027' => 'dca', 'DCAR_017327' => 'dca', 'DCAR_020743' => 'dca', 'DCAR_026157' => 'dca', 'DCAR_032339' => 'dca', 'DCAR_032340' => 'dca', 'Dinv11200' => 'din', 'Dinv11201' => 'din', 'Dinv20631' => 'din', 'Dinv23182' => 'din', 'Dinv33466' => 'din', 'Dinv33583' => 'din', 'Dinv38565' => 'din', 'Duzib068G0200' => 'dzi', 'Duzib147G0132' => 'dzi', 'Duzib147G0635' => 'dzi', 'Duzib205G1670' => 'dzi', 'Duzib251G0606' => 'dzi', 'ECA232G3336' => 'eca', 'ECA232G3763' => 'eca', 'ECA232G4845' => 'eca', 'ECA234G1607' => 'eca', 'ECA246G0932' => 'eca', 'ECA247G0781' => 'eca', 'ECA247G1932' => 'eca', 'ECA247G2079' => 'eca', 'ECA247G3338' => 'eca', 'ECA247G4115' => 'eca', 'EL10Ac3g06552' => 'bvu', 'EL10Ac5g10721' => 'bvu', 'EL10Ac5g10722' => 'bvu', 'EL10Ac5g10723' => 'bvu', 'EL10Ac5g11361' => 'bvu', 'EL10Ac6g13553' => 'bvu', 'EL10As8g23872' => 'bvu', 'Eucgr.B00250' => 'egr', 'Eucgr.B00251' => 'egr', 'Eucgr.B03533' => 'egr', 'Eucgr.I02381' => 'egr', 'Eucgr.K02700' => 'egr', 'FAN02G0174' => 'fan', 'FAN02G3146' => 'fan', 'FAN04G1672' => 'fan', 'FAN04G2273' => 'fan', 'FAN05G2791' => 'fan', 'FAN05G4035' => 'fan', 'FAN07G0834' => 'fan', 'FAN08G1198' => 'fan', 'FAN09G4182' => 'fan', 'FAN12G0496' => 'fan', 'FAN13G1027' => 'fan', 'FAN13G2951' => 'fan', 'FAN14G0705' => 'fan', 'FAN14G0720' => 'fan', 'FAN17G0201' => 'fan', 'FAN17G2665' => 'fan', 'FAN18G1456' => 'fan', 'FAN18G1525' => 'fan', 'FAN18G3500' => 'fan', 'FAN28G2670' => 'fan', 'FvH4_1g12391' => 'fve', 'FvH4_4g23220' => 'fve', 'FvH4_5g08810' => 'fve', 'FvH4_5g28960' => 'fve', 'FvH4_6g42820' => 'fve', 'FvH4_6g51110' => 'fve', 'Glyma.02G051802' => 'gma', 'Glyma.04G185300' => 'gma', 'Glyma.05G202900' => 'gma', 'Glyma.08G010300' => 'gma', 'Glyma.16G131900' => 'gma', 'Glyma.17G087900' => 'gma', 'Gohir.A07G048600' => 'ghi', 'Gohir.A11G179000' => 'ghi', 'Gohir.A12G140900' => 'ghi', 'Gohir.A12G140950' => 'ghi', 'Gohir.A12G191700' => 'ghi', 'Gohir.A13G086300' => 'ghi', 'Gohir.D07G052900' => 'ghi', 'Gohir.D11G186600' => 'ghi', 'Gohir.D12G145575' => 'ghi', 'Gohir.D12G145650' => 'ghi', 'Gohir.D12G145725' => 'ghi', 'Gohir.D12G194050' => 'ghi', 'Gohir.D13G091800' => 'ghi', 'Gorai.001G055900' => 'gra', 'Gorai.007G198400' => 'gra', 'Gorai.008G157000' => 'gra', 'Gorai.008G157100' => 'gra', 'Gorai.008G208700' => 'gra', 'Gorai.010G138700' => 'gra', 'GSVIVG01000977001' => 'vvi', 'GSVIVG01007708001' => 'vvi', 'GSVIVG01008587001' => 'vvi', 'GSVIVG01018849001' => 'vvi', 'GSVIVG01032432001' => 'vvi', 'HanXRQChr02g0034131' => 'han', 'HanXRQChr02g0035981' => 'han', 'HanXRQChr02g0035991' => 'han', 'HanXRQChr05g0155611' => 'han', 'HanXRQChr05g0155621' => 'han', 'HanXRQChr08g0236501' => 'han', 'HanXRQChr09g0261321' => 'han', 'HanXRQChr09g0272081' => 'han', 'HanXRQChr10g0310741' => 'han', 'HanXRQChr11g0325591' => 'han', 'HanXRQChr12g0385691' => 'han', 'HanXRQChr13g0387801' => 'han', 'HanXRQChr15g0463011' => 'han', 'Haze_03826' => 'cav', 'Haze_03827' => 'cav', 'Haze_07183' => 'cav', 'Haze_07537' => 'cav', 'Haze_07539' => 'cav', 'Haze_12461' => 'cav', 'Haze_16115' => 'cav', 'Haze_16808' => 'cav', 'Haze_18531' => 'cav', 'Hma1.2p1_0046F.1_g026700' => 'hma', 'Hma1.2p1_0046F.1_g026710' => 'hma', 'Hma1.2p1_0168F.1_g074340' => 'hma', 'Hma1.2p1_0266F.1_g107030' => 'hma', 'Hma1.2p1_0266F.1_g107060' => 'hma', 'Hma1.2p1_0275F.1_g110510' => 'hma', 'Hma1.2p1_0592F.1_g185490' => 'hma', 'Hma1.2p1_0592F.1_g185500' => 'hma', 'Hma1.2p1_0592F.1_g185510' => 'hma', 'Hma1.2p1_0592F.1_g185520' => 'hma', 'Hma1.2p1_0592F.1_g185530' => 'hma', 'Hma1.2p1_0818F.1_g223450' => 'hma', 'HPP92_009708' => 'vpl', 'HPP92_009793' => 'vpl', 'HPP92_009796' => 'vpl', 'HPP92_009797' => 'vpl', 'HPP92_014940' => 'vpl', 'HPP92_014988' => 'vpl', 'Hund02463' => 'sun', 'Hund02760' => 'sun', 'Hund05071' => 'sun', 'Hund10108' => 'sun', 'Hund11204' => 'sun', 'Hund14016' => 'sun', 'Hund16464' => 'sun', 'Lalb_Chr09g0333391' => 'lal', 'Lalb_Chr11g0070461' => 'lal', 'Lalb_Chr12g0201671' => 'lal', 'Lalb_Chr13g0297161' => 'lal', 'Lj1g0002823' => 'lja', 'Lj3C1074T6' => 'lonja', 'Lj4A212T28' => 'lonja', 'Lj4g0005516' => 'lja', 'Lj4g0013705' => 'lja', 'Lj4g0027865' => 'lja', 'Lj5C92G16' => 'lonja', 'Lj5C92T12' => 'lonja', 'Lj7C596T3' => 'lonja', 'Lj9A446G59' => 'lonja', 'Lj9A482G21' => 'lonja', 'Lsat_1_v5_gn_1_28261' => 'lsa', 'Lsat_1_v5_gn_1_28281' => 'lsa', 'Lsat_1_v5_gn_1_32721' => 'lsa', 'Lsat_1_v5_gn_4_151760' => 'lsa', 'Lsat_1_v5_gn_4_2120' => 'lsa', 'Lsat_1_v5_gn_4_75761' => 'lsa', 'Lsat_1_v5_gn_5_10920' => 'lsa', 'Manes.02G099900' => 'mes', 'Manes.11G096200' => 'mes', 'Manes.12G007200' => 'mes', 'Manes.14G048300' => 'mes', 'Manes.17G114700' => 'mes', 'Mapoly0002s0070' => 'mpo', 'Mapoly0029s0099' => 'mpo', 'MBI07_g24742_MAGBIO' => 'mbi', 'MBI10_g27988_MAGBIO' => 'mbi', 'MBI11_g13057_MAGBIO' => 'mbi', 'MD02G1137200' => 'mdo', 'MD06G1137200' => 'mdo', 'MD07G1122300' => 'mdo', 'MD09G1078200' => 'mdo', 'MD13G1123700' => 'mdo', 'MD14G1151900' => 'mdo', 'MD17G1030900' => 'mdo', 'MD17G1068200' => 'mdo', 'MD17G1068600' => 'mdo', 'Medtr3g077540' => 'mtr', 'Medtr4g105530' => 'mtr', 'Medtr8g076580' => 'mtr', 'Medtr8g076590' => 'mtr', 'Medtr8g096410' => 'mtr', 'MELO3C016411.2' => 'cme', 'MELO3C017780.2' => 'cme', 'MELO3C022560.2' => 'cme', 'MELO3C026187.2' => 'cme', 'MELO3C026286.2' => 'cme', 'MELO3C032854.2' => 'cme', 'Migut.H02495' => 'egut', 'Migut.I00561' => 'egut', 'Migut.K01015' => 'egut', 'Migut.K01016' => 'egut', 'Migut.L00743' => 'egut', 'Migut.L00744' => 'egut', 'Migut.L00746' => 'egut', 'Migut.L00798' => 'egut', 'Migut.L00799' => 'egut', 'Migut.N02096' => 'egut', 'MSTRG.11259' => 'ama', 'MSTRG.23142' => 'ama', 'MSTRG.2499' => 'ama', 'Nitab4.5_0000003g0730' => 'nta', 'Nitab4.5_0000137g0020' => 'nta', 'Nitab4.5_0000721g0210' => 'nta', 'Nitab4.5_0000723g0050' => 'nta', 'Nitab4.5_0000913g0070' => 'nta', 'Nitab4.5_0001332g0040' => 'nta', 'Nitab4.5_0001771g0050' => 'nta', 'Nitab4.5_0001918g0050' => 'nta', 'Nitab4.5_0002686g0030' => 'nta', 'Nitab4.5_0003156g0020' => 'nta', 'Nitab4.5_0003383g0040' => 'nta', 'Nitab4.5_0003918g0010' => 'nta', 'Nitab4.5_0006760g0010' => 'nta', 'Nn1g05981' => 'nnu', 'Nn1g06288' => 'nnu', 'Nn3g16371' => 'nnu', 'Nn3g16786' => 'nnu', 'Nn4g22232' => 'nnu', 'Oeu005144.1' => 'oeu', 'Oeu005145.1' => 'oeu', 'Oeu011348.1' => 'oeu', 'Oeu016415.1' => 'oeu', 'Oeu023501.1' => 'oeu', 'Oeu044473.1' => 'oeu', 'Oeu048892.2' => 'oeu', 'Os01g0549200' => 'osa', 'Os02g0469300' => 'osa', 'Os04g0311100' => 'osa', 'Os06g0474900' => 'osa', 'Os10g0181700' => 'osa', 'Os11g0454800' => 'osa', 'Peaxi162Scf00037g00714' => 'pax', 'Peaxi162Scf00084g01217' => 'pax', 'Peaxi162Scf00257g00217' => 'pax', 'Peaxi162Scf00516g00215' => 'pax', 'Peaxi162Scf00689g00123' => 'pax', 'PGR044G2719' => 'pgr', 'PGR083G1360' => 'pgr', 'PGR102G2849' => 'pgr', 'PGR119G2534' => 'pgr', 'PGSC0003DMG400003538' => 'stu', 'PGSC0003DMG400028138' => 'stu', 'PGSC0003DMG400031732' => 'stu', 'PGSC0003DMG400038165' => 'stu', 'Phvul.002G284600' => 'pvu', 'Phvul.003G258200' => 'pvu', 'Phvul.009G176500' => 'pvu', 'Potri.003G167201' => 'ptr', 'Potri.005G118400' => 'ptr', 'Potri.012G089000' => 'ptr', 'Potri.012G102800' => 'ptr', 'Potri.015G079400' => 'ptr', 'Potri.015G100900' => 'ptr', 'Pp3c14_9810' => 'ppa', 'Pp3c15_10450' => 'ppa', 'Pp3c20_19150' => 'ppa', 'Pp3c23_12740' => 'ppa', 'Pp3c23_6310' => 'ppa', 'Pp3c24_3720' => 'ppa', 'Pp3c27_2580' => 'ppa', 'Pp3c9_8990' => 'ppa', 'PRCOL_00002854' => 'pco', 'Prupe.1G221200' => 'ppe', 'Prupe.3G289000' => 'ppe', 'Prupe.5G147000' => 'ppe', 'Prupe.6G157300' => 'ppe', 'Prupe.7G163400' => 'ppe', 'Psat0s2177g0040' => 'psa', 'Psat3g174760' => 'psa', 'Psat3g192160' => 'psa', 'Psat4g058520' => 'psa', 'Psat4g096840' => 'psa', 'Psat7g037320' => 'psa', 'PSO017G1274' => 'pso', 'PSO017G5166' => 'pso', 'PSO063G4558' => 'pso', 'PSO170G4458' => 'pso', 'PSO170G5005' => 'pso', 'PSO210G6156' => 'pso', 'PSO210G6635' => 'pso', 'PSO210G7397' => 'pso', 'PSO210G7700' => 'pso', 'PSO455G0035' => 'pso', 'PSO455G0180' => 'pso', 'PSO478G4515' => 'pso', 'PSO832G1305' => 'pso', 'PSO832G3489' => 'pso', 'QL02p075247' => 'qlo', 'QL03p051148' => 'qlo', 'QL05p010313' => 'qlo', 'QL06p034627' => 'qlo', 'QL10p001889' => 'qlo', 'QL10p010846' => 'qlo', 'RcHm_v2.0_Chr1g0350621' => 'rch', 'RcHm_v2.0_Chr1g0350641' => 'rch', 'RcHm_v2.0_Chr2g0092891' => 'rch', 'RcHm_v2.0_Chr2g0100251' => 'rch', 'RcHm_v2.0_Chr2g0158661' => 'rch', 'RcHm_v2.0_Chr2g0172741' => 'rch', 'RcHm_v2.0_Chr4g0429571' => 'rch', 'RcHm_v2.0_Chr5g0042471' => 'rch', 'RcHm_v2.0_Chr7g0189451' => 'rch', 'Rhsim08G0052000' => 'rsi', 'Rhsim08G0174400' => 'rsi', 'Rhsim08G0193200' => 'rsi', 'Rhsim10G0214800' => 'rsi', 'Rhsim10G0214900' => 'rsi', 'Rhsim10G0215000' => 'rsi', 'Rhsim12G0022900' => 'rsi', 'Rhsim12G0177500' => 'rsi', 'Rhsim12G0177700' => 'rsi', 'Sabra03G0122600' => 'sbr', 'Sabra05G0097400' => 'sbr', 'Sabra12G0064100' => 'sbr', 'Sabra15G0121300' => 'sbr', 'SalBow2G0642' => 'sbo', 'SalBow5G2667' => 'sbo', 'SalBow5G4873' => 'sbo', 'SalBow8G2395' => 'sbo', 'Sc03g0003290' => 'sci', 'Sc10g0010130' => 'sci', 'Sc22g0003650' => 'sci', 'Sed0001603' => 'sed', 'Sed0004259' => 'sed', 'Sed0006789' => 'sed', 'Sed0011838' => 'sed', 'Sed0012964' => 'sed', 'Sed0016383' => 'sed', 'Sed0019010' => 'sed', 'Sed0020188' => 'sed', 'SEGI_04702' => 'sgi', 'SEGI_17231' => 'sgi', 'SEGI_18877' => 'sgi', 'SEGI_25196' => 'sgi', 'SEGI_25515' => 'sgi', 'SEGI_28445' => 'sgi', 'SEGI_37452' => 'sgi', 'SGA_v2.0_scaffold188G40336' => 'sas', 'SGA_v2.0_scaffold228G43247' => 'sas', 'SGA_v2.0_scaffold280G46853' => 'sas', 'SGA_v2.0_scaffold34G13808' => 'sas', 'SGA_v2.0_scaffold40G15576' => 'sas', 'SGA_v2.0_scaffold611G53188' => 'sas', 'SGA_v2.0_scaffold78G25461' => 'sas', 'SGA_v2.0_scaffold90G27888' => 'sas', 'SHI08601' => 'shi', 'SHI08606' => 'shi', 'SHI17117' => 'shi', 'SHI17119' => 'shi', 'SMO118G0201' => 'smo', 'SMO169G0247' => 'smo', 'SMO176G0006' => 'smo', 'SMO176G0015' => 'smo', 'SMO202G0006' => 'smo', 'SMO240G0050' => 'smo', 'SMO286G0009' => 'smo', 'SMO338G0033' => 'smo', 'SMO356G0533' => 'smo', 'SMO364G0382' => 'smo', 'SMO367G0166' => 'smo', 'SMO367G1098' => 'smo', 'Solyc01g009920.3' => 'sly', 'Solyc01g099300.3' => 'sly', 'Solyc02g084700.3' => 'sly', 'Solyc03g097520.3' => 'sly', 'Solyc06g071580.3' => 'sly', 'Solyc10g081760.3' => 'sly', 'Sopen01g005480' => 'spe', 'Sopen01g042850' => 'spe', 'Sopen02g029370' => 'spe', 'Sopen03g028280' => 'spe', 'Sopen06g027870' => 'spe', 'Sopen10g032270' => 'spe', 'Sp5g18180' => 'spa', 'Sp6g12880' => 'spa', 'Sp6g30850' => 'spa', 'Sp7g22960' => 'spa', 'Sp7g34010' => 'spa', 'SpUn1326_0010' => 'spa', 'TAR371G0242' => 'tar', 'TAR622G0638' => 'tar', 'TAR628G1548' => 'tar', 'TAR629G1079' => 'tar', 'TAR629G3413' => 'tar', 'THA.LOC104804249' => 'tha', 'THA.LOC104808315' => 'tha', 'THA.LOC104809238' => 'tha', 'THA.LOC104825484' => 'tha', 'Thecc.01G025500' => 'tca', 'Thecc.03G015800' => 'tca', 'Thecc.03G018000' => 'tca', 'Thecc.03G134800' => 'tca', 'Thecc.04G014700' => 'tca', 'Thhalv10006991m.g' => 'esa', 'Thhalv10012707m.g' => 'esa', 'Thhalv10015739m.g' => 'esa', 'Thhalv10024553m.g' => 'esa', 'Thhalv10024673m.g' => 'esa', 'Thhalv10029187m.g' => 'esa', 'TPR.G12971' => 'tpr', 'TPR.G29396' => 'tpr', 'TPR.G33376' => 'tpr', 'TPR.G35508' => 'tpr', 'TPR.G35516' => 'tpr', 'TPR.G37317' => 'tpr', 'TPR.G37389' => 'tpr', 'TPR.G37523' => 'tpr', 'TPR.G559' => 'tpr', 'TWI14G0070' => 'twi', 'TWI14G0729' => 'twi', 'TWI18G0596' => 'twi', 'TWI39G0780' => 'twi', 'TWI39G0850' => 'twi', 'TWI73G1052' => 'twi', 'unitig_52.g17485' => 'ugi', 'unitig_61.g26355' => 'ugi', 'vmacro01040' => 'vma', 'vmacro16731' => 'vma', 'vmacro18270' => 'vma', 'vmacro19142' => 'vma', 'vmacro19407' => 'vma', 'vmacro19408' => 'vma', 'vmacro21899' => 'vma', 'vmacro21900' => 'vma', 'vmacro21901' => 'vma', 'VMungo0251G0490' => 'vmu', 'VMungo0251G1748' => 'vmu', 'VMungo1309G0421' => 'vmu', 'Zm00001eb086500' => 'zma', 'Zm00001eb150680' => 'zma', 'Zm00001eb162330' => 'zma', 'Zm00001eb203130' => 'zma', 'Zm00001eb369480' => 'zma', 'Zm00001eb382340' => 'zma', 'Zm00001eb416360' => 'zma' ) $gf_id = 'HOM05D000902' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000902' ) $data_identifier = 'HOM05D000902' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 13, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 10, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 6, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 9, 'hma' => (int) 12, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 4, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 6, 'ppa' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 6, 'rch' => (int) 9, 'rsi' => (int) 9, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 12, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 3, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416360' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000902', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '663', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02470' => 'bna', 'A01p16260' => 'bna', 'A02p01680' => 'bna', 'A03p16600' => 'bna', 'A03p55660' => 'bna', 'A03p64160' => 'bna', 'A03p64170' => 'bna', 'A08p31900' => 'bna', 'A09p59530' => 'bna', 'A10p08230' => 'bna', 'A10p25090' => 'bna', 'Aa31LG3G7100' => 'aar', 'Aa31LG3G7110' => 'aar', 'Aa31LG6G13160' => 'aar', 'Aa31LG7G10770' => 'aar', 'Aa31LG7G3830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2723' => 'aag', 'Actinidia08045' => 'ach', 'Actinidia08888' => 'ach', 'Actinidia18333' => 'ach', 'Actinidia19334' => 'ach', 'Actinidia25552' => 'ach', 'Actinidia26089' => 'ach', 'Actinidia30615' => 'ach', 'Actinidia30616' => 'ach', 'Actinidia33083' => 'ach', 'Actinidia35762' => 'ach', 'Ah.02g110620' => 'amhyb', 'Ah.11g046390' => 'amhyb', 'AL1G31670' => 'aly', 'AL6G23730' => 'aly', 'AL7G14740' => 'aly', 'AL7G14750' => 'aly', 'AL7G14760' => 'aly', 'AL7G28220' => 'aly', 'AL8G24940' => 'aly', 'Aqoxy3G01665' => 'aox', 'Aqoxy3G02853' => 'aox', 'Aqoxy5G01513' => 'aox', 'Aqoxy5G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8SKA4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ75LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKDA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0LJZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7REX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZP4YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWX7I5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2QKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS0L9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPCD8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q161UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC7XCF' => 'arhy', 'AT1G19100' => 'ath', 'AT4G24970' => 'ath', 'AT4G36270' => 'ath', 'AT4G36280' => 'ath', 'AT4G36290' => 'ath', 'AT5G13130' => 'ath', 'AT5G50780' => 'ath', 'ATR0582G266' => 'atr', 'ATR0661G195' => 'atr', 'ATR1152G031' => 'atr', 'Atru.chr11.2382' => 'acertr', 'Atru.chr12.2337' => 'acertr', 'Atru.chr3.744' => 'acertr', 'Atru.chr6.1870' => 'acertr', 'Atru.chr9.2515' => 'acertr', 'AUR62004120' => 'cqu', 'AUR62005667' => 'cqu', 'AUR62007634' => 'cqu', 'AUR62008186' => 'cqu', 'AUR62008187' => 'cqu', 'AUR62008188' => 'cqu', 'AUR62027954' => 'cqu', 'AUR62028766' => 'cqu', 'AUR62028767' => 'cqu', 'AUR62028768' => 'cqu', 'AUR62028886' => 'cqu', 'AUR62029563' => 'cqu', 'AUR62038832' => 'cqu', 'BcaB01g04149' => 'bca', 'BcaB03g12940' => 'bca', 'BcaB03g13090' => 'bca', 'BcaB03g14466' => 'bca', 'BcaB05g24035' => 'bca', 'BcaC01g06050' => 'bca', 'BcaC04g19148' => 'bca', 'BcaC04g20761' => 'bca', 'BcaC06g32845' => 'bca', 'BcaC07g41274' => 'bca', 'BcaC09g50827' => 'bca', 'BcaNung00741' => 'bca', 'BcaNung00742' => 'bca', 'BcaNung01859' => 'bca', 'BcaNung03985' => 'bca', 'BcaNung03989' => 'bca', 'BcaNung05661' => 'bca', 'BolC1t00257H' => 'bol', 'BolC1t01956H' => 'bol', 'BolC2t06534H' => 'bol', 'BolC3t14334H' => 'bol', 'BolC5t30451H' => 'bol', 'BolC7t45880H' => 'bol', 'BolC7t46586H' => 'bol', 'BolC8t49301H' => 'bol', 'BolC8t51837H' => 'bol', 'BolC9t56822H' => 'bol', 'BolC9t59235H' => 'bol', 'BraA01t00234Z' => 'bra', 'BraA01t01563Z' => 'bra', 'BraA02t05147Z' => 'bra', 'BraA03t10947Z' => 'bra', 'BraA03t14633Z' => 'bra', 'BraA08t35112Z' => 'bra', 'BraA09t41330Z' => 'bra', 'BraA10t44570Z' => 'bra', 'C01p02670' => 'bna', 'C01p20260' => 'bna', 'C02p05890' => 'bna', 'C03p19530' => 'bna', 'C05p17470' => 'bna', 'C07p53900' => 'bna', 'C07p61630' => 'bna', 'C08p16800' => 'bna', 'C08p42810' => 'bna', 'C09p39480' => 'bna', 'C09p63980' => 'bna', 'CAN.G1001.7' => 'can', 'CAN.G1034.55' => 'can', 'CAN.G143.7' => 'can', 'CAN.G3340.1' => 'can', 'CAN.G358.19' => 'can', 'CAN.G373.2' => 'can', 'CAN.G674.16' => 'can', 'CAN.G674.17' => 'can', 'CAN.G674.18' => 'can', 'CAN.G732.2' => 'can', 'CAN.G732.3' => 'can', 'CAN.G993.39' => 'can', 'CANSAT01G2052' => 'cansat', 'CANSAT80G0070' => 'cansat', 'CANSAT80G0483' => 'cansat', 'CANSAT80G0625' => 'cansat', 'CARHR019690' => 'chi', 'CARHR080280' => 'chi', 'CARHR152750' => 'chi', 'CARHR152760' => 'chi', 'CARHR152770' => 'chi', 'CARHR200340' => 'chi', 'CARHR232370' => 'chi', 'CARHR244670' => 'chi', 'CARHR244680' => 'chi', 'CARHR257520' => 'chi', 'Carub.0001s1872' => 'cru', 'Carub.0006s1130' => 'cru', 'Carub.0007s0396' => 'cru', 'Carub.0007s0397' => 'cru', 'Carub.0007s1608' => 'cru', 'Carub.0008s1068' => 'cru', 'Carub.0008s1077' => 'cru', 'Ca_16158_v3' => 'car', 'Ca_17571_v3' => 'car', 'Ca_21936_v3' => 'car', 'Ca_22350_v3' => 'car', 'CBR_g22445' => 'cbr', 'CBR_g26290' => 'cbr', 'Cc04_g09610' => 'ccan', 'Cc04_g12280' => 'ccan', 'Cc07_g10230' => 'ccan', 'CDE02G0093' => 'cde', 'CDE02G0701' => 'cde', 'CDE04G1050' => 'cde', 'CDE05G1833' => 'cde', 'CDE05G3058' => 'cde', 'CDE05G3380' => 'cde', 'CDE06G0536' => 'cde', 'Cfa006923' => 'cfa', 'Cfa009402' => 'cfa', 'Cfa018751' => 'cfa', 'Cfa019164' => 'cfa', 'Cfa022935' => 'cfa', 'Ciclev10019081m.g' => 'ccl', 'Ciclev10025076m.g' => 'ccl', 'Ciclev10030712m.g' => 'ccl', 'Ciclev10033760m.g' => 'ccl', 'CiPaw.05G105600' => 'cil', 'CiPaw.08G136700' => 'cil', 'CiPaw.11G003900' => 'cil', 'CiPaw.11G023700' => 'cil', 'CiPaw.12G003700' => 'cil', 'ClCG06G017100' => 'cla', 'ClCG06G018110' => 'cla', 'ClCG07G008800' => 'cla', 'ClCG07G015330' => 'cla', 'COL.COLO4_13698' => 'col', 'COL.COLO4_16659' => 'col', 'COL.COLO4_21986' => 'col', 'COL.COLO4_24049' => 'col', 'COL.COLO4_29061' => 'col', 'COL.COLO4_29075' => 'col', 'COL.COLO4_30094' => 'col', 'Cpa.g.c33689' => 'cpa', 'Cpa.g.sc108.39' => 'cpa', 'Cpa.g.sc108.41' => 'cpa', 'Cpa.g.sc1163.1' => 'cpa', 'Cpa.g.sc4.155' => 'cpa', 'Cpa.g.sc6.194' => 'cpa', 'CsaV3_1G000340' => 'csa', 'CsaV3_1G001400' => 'csa', 'CsaV3_4G002220' => 'csa', 'CsaV3_4G005370' => 'csa', 'CSS0007487' => 'camsi', 'CSS0008066' => 'camsi', 'CSS0009120' => 'camsi', 'CSS0015512' => 'camsi', 'CSS0022409' => 'camsi', 'CSS0025358' => 'camsi', 'CSS0044547' => 'camsi', 'DCAR_013057' => 'dca', 'DCAR_015058' => 'dca', 'DCAR_016027' => 'dca', 'DCAR_017327' => 'dca', 'DCAR_020743' => 'dca', 'DCAR_026157' => 'dca', 'DCAR_032339' => 'dca', 'DCAR_032340' => 'dca', 'Dinv11200' => 'din', 'Dinv11201' => 'din', 'Dinv20631' => 'din', 'Dinv23182' => 'din', 'Dinv33466' => 'din', 'Dinv33583' => 'din', 'Dinv38565' => 'din', 'Duzib068G0200' => 'dzi', 'Duzib147G0132' => 'dzi', 'Duzib147G0635' => 'dzi', 'Duzib205G1670' => 'dzi', 'Duzib251G0606' => 'dzi', 'ECA232G3336' => 'eca', 'ECA232G3763' => 'eca', 'ECA232G4845' => 'eca', 'ECA234G1607' => 'eca', 'ECA246G0932' => 'eca', 'ECA247G0781' => 'eca', 'ECA247G1932' => 'eca', 'ECA247G2079' => 'eca', 'ECA247G3338' => 'eca', 'ECA247G4115' => 'eca', 'EL10Ac3g06552' => 'bvu', 'EL10Ac5g10721' => 'bvu', 'EL10Ac5g10722' => 'bvu', 'EL10Ac5g10723' => 'bvu', 'EL10Ac5g11361' => 'bvu', 'EL10Ac6g13553' => 'bvu', 'EL10As8g23872' => 'bvu', 'Eucgr.B00250' => 'egr', 'Eucgr.B00251' => 'egr', 'Eucgr.B03533' => 'egr', 'Eucgr.I02381' => 'egr', 'Eucgr.K02700' => 'egr', 'FAN02G0174' => 'fan', 'FAN02G3146' => 'fan', 'FAN04G1672' => 'fan', 'FAN04G2273' => 'fan', 'FAN05G2791' => 'fan', 'FAN05G4035' => 'fan', 'FAN07G0834' => 'fan', 'FAN08G1198' => 'fan', 'FAN09G4182' => 'fan', 'FAN12G0496' => 'fan', 'FAN13G1027' => 'fan', 'FAN13G2951' => 'fan', 'FAN14G0705' => 'fan', 'FAN14G0720' => 'fan', 'FAN17G0201' => 'fan', 'FAN17G2665' => 'fan', 'FAN18G1456' => 'fan', 'FAN18G1525' => 'fan', 'FAN18G3500' => 'fan', 'FAN28G2670' => 'fan', 'FvH4_1g12391' => 'fve', 'FvH4_4g23220' => 'fve', 'FvH4_5g08810' => 'fve', 'FvH4_5g28960' => 'fve', 'FvH4_6g42820' => 'fve', 'FvH4_6g51110' => 'fve', 'Glyma.02G051802' => 'gma', 'Glyma.04G185300' => 'gma', 'Glyma.05G202900' => 'gma', 'Glyma.08G010300' => 'gma', 'Glyma.16G131900' => 'gma', 'Glyma.17G087900' => 'gma', 'Gohir.A07G048600' => 'ghi', 'Gohir.A11G179000' => 'ghi', 'Gohir.A12G140900' => 'ghi', 'Gohir.A12G140950' => 'ghi', 'Gohir.A12G191700' => 'ghi', 'Gohir.A13G086300' => 'ghi', 'Gohir.D07G052900' => 'ghi', 'Gohir.D11G186600' => 'ghi', 'Gohir.D12G145575' => 'ghi', 'Gohir.D12G145650' => 'ghi', 'Gohir.D12G145725' => 'ghi', 'Gohir.D12G194050' => 'ghi', 'Gohir.D13G091800' => 'ghi', 'Gorai.001G055900' => 'gra', 'Gorai.007G198400' => 'gra', 'Gorai.008G157000' => 'gra', 'Gorai.008G157100' => 'gra', 'Gorai.008G208700' => 'gra', 'Gorai.010G138700' => 'gra', 'GSVIVG01000977001' => 'vvi', 'GSVIVG01007708001' => 'vvi', 'GSVIVG01008587001' => 'vvi', 'GSVIVG01018849001' => 'vvi', 'GSVIVG01032432001' => 'vvi', 'HanXRQChr02g0034131' => 'han', 'HanXRQChr02g0035981' => 'han', 'HanXRQChr02g0035991' => 'han', 'HanXRQChr05g0155611' => 'han', 'HanXRQChr05g0155621' => 'han', 'HanXRQChr08g0236501' => 'han', 'HanXRQChr09g0261321' => 'han', 'HanXRQChr09g0272081' => 'han', 'HanXRQChr10g0310741' => 'han', 'HanXRQChr11g0325591' => 'han', 'HanXRQChr12g0385691' => 'han', 'HanXRQChr13g0387801' => 'han', 'HanXRQChr15g0463011' => 'han', 'Haze_03826' => 'cav', 'Haze_03827' => 'cav', 'Haze_07183' => 'cav', 'Haze_07537' => 'cav', 'Haze_07539' => 'cav', 'Haze_12461' => 'cav', 'Haze_16115' => 'cav', 'Haze_16808' => 'cav', 'Haze_18531' => 'cav', 'Hma1.2p1_0046F.1_g026700' => 'hma', 'Hma1.2p1_0046F.1_g026710' => 'hma', 'Hma1.2p1_0168F.1_g074340' => 'hma', 'Hma1.2p1_0266F.1_g107030' => 'hma', 'Hma1.2p1_0266F.1_g107060' => 'hma', 'Hma1.2p1_0275F.1_g110510' => 'hma', 'Hma1.2p1_0592F.1_g185490' => 'hma', 'Hma1.2p1_0592F.1_g185500' => 'hma', 'Hma1.2p1_0592F.1_g185510' => 'hma', 'Hma1.2p1_0592F.1_g185520' => 'hma', 'Hma1.2p1_0592F.1_g185530' => 'hma', 'Hma1.2p1_0818F.1_g223450' => 'hma', 'HPP92_009708' => 'vpl', 'HPP92_009793' => 'vpl', 'HPP92_009796' => 'vpl', 'HPP92_009797' => 'vpl', 'HPP92_014940' => 'vpl', 'HPP92_014988' => 'vpl', 'Hund02463' => 'sun', 'Hund02760' => 'sun', 'Hund05071' => 'sun', 'Hund10108' => 'sun', 'Hund11204' => 'sun', 'Hund14016' => 'sun', 'Hund16464' => 'sun', 'Lalb_Chr09g0333391' => 'lal', 'Lalb_Chr11g0070461' => 'lal', 'Lalb_Chr12g0201671' => 'lal', 'Lalb_Chr13g0297161' => 'lal', 'Lj1g0002823' => 'lja', 'Lj3C1074T6' => 'lonja', 'Lj4A212T28' => 'lonja', 'Lj4g0005516' => 'lja', 'Lj4g0013705' => 'lja', 'Lj4g0027865' => 'lja', 'Lj5C92G16' => 'lonja', 'Lj5C92T12' => 'lonja', 'Lj7C596T3' => 'lonja', 'Lj9A446G59' => 'lonja', 'Lj9A482G21' => 'lonja', 'Lsat_1_v5_gn_1_28261' => 'lsa', 'Lsat_1_v5_gn_1_28281' => 'lsa', 'Lsat_1_v5_gn_1_32721' => 'lsa', 'Lsat_1_v5_gn_4_151760' => 'lsa', 'Lsat_1_v5_gn_4_2120' => 'lsa', 'Lsat_1_v5_gn_4_75761' => 'lsa', 'Lsat_1_v5_gn_5_10920' => 'lsa', 'Manes.02G099900' => 'mes', 'Manes.11G096200' => 'mes', 'Manes.12G007200' => 'mes', 'Manes.14G048300' => 'mes', 'Manes.17G114700' => 'mes', 'Mapoly0002s0070' => 'mpo', 'Mapoly0029s0099' => 'mpo', 'MBI07_g24742_MAGBIO' => 'mbi', 'MBI10_g27988_MAGBIO' => 'mbi', 'MBI11_g13057_MAGBIO' => 'mbi', 'MD02G1137200' => 'mdo', 'MD06G1137200' => 'mdo', 'MD07G1122300' => 'mdo', 'MD09G1078200' => 'mdo', 'MD13G1123700' => 'mdo', 'MD14G1151900' => 'mdo', 'MD17G1030900' => 'mdo', 'MD17G1068200' => 'mdo', 'MD17G1068600' => 'mdo', 'Medtr3g077540' => 'mtr', 'Medtr4g105530' => 'mtr', 'Medtr8g076580' => 'mtr', 'Medtr8g076590' => 'mtr', 'Medtr8g096410' => 'mtr', 'MELO3C016411.2' => 'cme', 'MELO3C017780.2' => 'cme', 'MELO3C022560.2' => 'cme', 'MELO3C026187.2' => 'cme', 'MELO3C026286.2' => 'cme', 'MELO3C032854.2' => 'cme', 'Migut.H02495' => 'egut', 'Migut.I00561' => 'egut', 'Migut.K01015' => 'egut', 'Migut.K01016' => 'egut', 'Migut.L00743' => 'egut', 'Migut.L00744' => 'egut', 'Migut.L00746' => 'egut', 'Migut.L00798' => 'egut', 'Migut.L00799' => 'egut', 'Migut.N02096' => 'egut', 'MSTRG.11259' => 'ama', 'MSTRG.23142' => 'ama', 'MSTRG.2499' => 'ama', 'Nitab4.5_0000003g0730' => 'nta', 'Nitab4.5_0000137g0020' => 'nta', 'Nitab4.5_0000721g0210' => 'nta', 'Nitab4.5_0000723g0050' => 'nta', 'Nitab4.5_0000913g0070' => 'nta', 'Nitab4.5_0001332g0040' => 'nta', 'Nitab4.5_0001771g0050' => 'nta', 'Nitab4.5_0001918g0050' => 'nta', 'Nitab4.5_0002686g0030' => 'nta', 'Nitab4.5_0003156g0020' => 'nta', 'Nitab4.5_0003383g0040' => 'nta', 'Nitab4.5_0003918g0010' => 'nta', 'Nitab4.5_0006760g0010' => 'nta', 'Nn1g05981' => 'nnu', 'Nn1g06288' => 'nnu', 'Nn3g16371' => 'nnu', 'Nn3g16786' => 'nnu', 'Nn4g22232' => 'nnu', 'Oeu005144.1' => 'oeu', 'Oeu005145.1' => 'oeu', 'Oeu011348.1' => 'oeu', 'Oeu016415.1' => 'oeu', 'Oeu023501.1' => 'oeu', 'Oeu044473.1' => 'oeu', 'Oeu048892.2' => 'oeu', 'Os01g0549200' => 'osa', 'Os02g0469300' => 'osa', 'Os04g0311100' => 'osa', 'Os06g0474900' => 'osa', 'Os10g0181700' => 'osa', 'Os11g0454800' => 'osa', 'Peaxi162Scf00037g00714' => 'pax', 'Peaxi162Scf00084g01217' => 'pax', 'Peaxi162Scf00257g00217' => 'pax', 'Peaxi162Scf00516g00215' => 'pax', 'Peaxi162Scf00689g00123' => 'pax', 'PGR044G2719' => 'pgr', 'PGR083G1360' => 'pgr', 'PGR102G2849' => 'pgr', 'PGR119G2534' => 'pgr', 'PGSC0003DMG400003538' => 'stu', 'PGSC0003DMG400028138' => 'stu', 'PGSC0003DMG400031732' => 'stu', 'PGSC0003DMG400038165' => 'stu', 'Phvul.002G284600' => 'pvu', 'Phvul.003G258200' => 'pvu', 'Phvul.009G176500' => 'pvu', 'Potri.003G167201' => 'ptr', 'Potri.005G118400' => 'ptr', 'Potri.012G089000' => 'ptr', 'Potri.012G102800' => 'ptr', 'Potri.015G079400' => 'ptr', 'Potri.015G100900' => 'ptr', 'Pp3c14_9810' => 'ppa', 'Pp3c15_10450' => 'ppa', 'Pp3c20_19150' => 'ppa', 'Pp3c23_12740' => 'ppa', 'Pp3c23_6310' => 'ppa', 'Pp3c24_3720' => 'ppa', 'Pp3c27_2580' => 'ppa', 'Pp3c9_8990' => 'ppa', 'PRCOL_00002854' => 'pco', 'Prupe.1G221200' => 'ppe', 'Prupe.3G289000' => 'ppe', 'Prupe.5G147000' => 'ppe', 'Prupe.6G157300' => 'ppe', 'Prupe.7G163400' => 'ppe', 'Psat0s2177g0040' => 'psa', 'Psat3g174760' => 'psa', 'Psat3g192160' => 'psa', 'Psat4g058520' => 'psa', 'Psat4g096840' => 'psa', 'Psat7g037320' => 'psa', 'PSO017G1274' => 'pso', 'PSO017G5166' => 'pso', 'PSO063G4558' => 'pso', 'PSO170G4458' => 'pso', 'PSO170G5005' => 'pso', 'PSO210G6156' => 'pso', 'PSO210G6635' => 'pso', 'PSO210G7397' => 'pso', 'PSO210G7700' => 'pso', 'PSO455G0035' => 'pso', 'PSO455G0180' => 'pso', 'PSO478G4515' => 'pso', 'PSO832G1305' => 'pso', 'PSO832G3489' => 'pso', 'QL02p075247' => 'qlo', 'QL03p051148' => 'qlo', 'QL05p010313' => 'qlo', 'QL06p034627' => 'qlo', 'QL10p001889' => 'qlo', 'QL10p010846' => 'qlo', 'RcHm_v2.0_Chr1g0350621' => 'rch', 'RcHm_v2.0_Chr1g0350641' => 'rch', 'RcHm_v2.0_Chr2g0092891' => 'rch', 'RcHm_v2.0_Chr2g0100251' => 'rch', 'RcHm_v2.0_Chr2g0158661' => 'rch', 'RcHm_v2.0_Chr2g0172741' => 'rch', 'RcHm_v2.0_Chr4g0429571' => 'rch', 'RcHm_v2.0_Chr5g0042471' => 'rch', 'RcHm_v2.0_Chr7g0189451' => 'rch', 'Rhsim08G0052000' => 'rsi', 'Rhsim08G0174400' => 'rsi', 'Rhsim08G0193200' => 'rsi', 'Rhsim10G0214800' => 'rsi', 'Rhsim10G0214900' => 'rsi', 'Rhsim10G0215000' => 'rsi', 'Rhsim12G0022900' => 'rsi', 'Rhsim12G0177500' => 'rsi', 'Rhsim12G0177700' => 'rsi', 'Sabra03G0122600' => 'sbr', 'Sabra05G0097400' => 'sbr', 'Sabra12G0064100' => 'sbr', 'Sabra15G0121300' => 'sbr', 'SalBow2G0642' => 'sbo', 'SalBow5G2667' => 'sbo', 'SalBow5G4873' => 'sbo', 'SalBow8G2395' => 'sbo', 'Sc03g0003290' => 'sci', 'Sc10g0010130' => 'sci', 'Sc22g0003650' => 'sci', 'Sed0001603' => 'sed', 'Sed0004259' => 'sed', 'Sed0006789' => 'sed', 'Sed0011838' => 'sed', 'Sed0012964' => 'sed', 'Sed0016383' => 'sed', 'Sed0019010' => 'sed', 'Sed0020188' => 'sed', 'SEGI_04702' => 'sgi', 'SEGI_17231' => 'sgi', 'SEGI_18877' => 'sgi', 'SEGI_25196' => 'sgi', 'SEGI_25515' => 'sgi', 'SEGI_28445' => 'sgi', 'SEGI_37452' => 'sgi', 'SGA_v2.0_scaffold188G40336' => 'sas', 'SGA_v2.0_scaffold228G43247' => 'sas', 'SGA_v2.0_scaffold280G46853' => 'sas', 'SGA_v2.0_scaffold34G13808' => 'sas', 'SGA_v2.0_scaffold40G15576' => 'sas', 'SGA_v2.0_scaffold611G53188' => 'sas', 'SGA_v2.0_scaffold78G25461' => 'sas', 'SGA_v2.0_scaffold90G27888' => 'sas', 'SHI08601' => 'shi', 'SHI08606' => 'shi', 'SHI17117' => 'shi', 'SHI17119' => 'shi', 'SMO118G0201' => 'smo', 'SMO169G0247' => 'smo', 'SMO176G0006' => 'smo', 'SMO176G0015' => 'smo', 'SMO202G0006' => 'smo', 'SMO240G0050' => 'smo', 'SMO286G0009' => 'smo', 'SMO338G0033' => 'smo', 'SMO356G0533' => 'smo', 'SMO364G0382' => 'smo', 'SMO367G0166' => 'smo', 'SMO367G1098' => 'smo', 'Solyc01g009920.3' => 'sly', 'Solyc01g099300.3' => 'sly', 'Solyc02g084700.3' => 'sly', 'Solyc03g097520.3' => 'sly', 'Solyc06g071580.3' => 'sly', 'Solyc10g081760.3' => 'sly', 'Sopen01g005480' => 'spe', 'Sopen01g042850' => 'spe', 'Sopen02g029370' => 'spe', 'Sopen03g028280' => 'spe', 'Sopen06g027870' => 'spe', 'Sopen10g032270' => 'spe', 'Sp5g18180' => 'spa', 'Sp6g12880' => 'spa', 'Sp6g30850' => 'spa', 'Sp7g22960' => 'spa', 'Sp7g34010' => 'spa', 'SpUn1326_0010' => 'spa', 'TAR371G0242' => 'tar', 'TAR622G0638' => 'tar', 'TAR628G1548' => 'tar', 'TAR629G1079' => 'tar', 'TAR629G3413' => 'tar', 'THA.LOC104804249' => 'tha', 'THA.LOC104808315' => 'tha', 'THA.LOC104809238' => 'tha', 'THA.LOC104825484' => 'tha', 'Thecc.01G025500' => 'tca', 'Thecc.03G015800' => 'tca', 'Thecc.03G018000' => 'tca', 'Thecc.03G134800' => 'tca', 'Thecc.04G014700' => 'tca', 'Thhalv10006991m.g' => 'esa', 'Thhalv10012707m.g' => 'esa', 'Thhalv10015739m.g' => 'esa', 'Thhalv10024553m.g' => 'esa', 'Thhalv10024673m.g' => 'esa', 'Thhalv10029187m.g' => 'esa', 'TPR.G12971' => 'tpr', 'TPR.G29396' => 'tpr', 'TPR.G33376' => 'tpr', 'TPR.G35508' => 'tpr', 'TPR.G35516' => 'tpr', 'TPR.G37317' => 'tpr', 'TPR.G37389' => 'tpr', 'TPR.G37523' => 'tpr', 'TPR.G559' => 'tpr', 'TWI14G0070' => 'twi', 'TWI14G0729' => 'twi', 'TWI18G0596' => 'twi', 'TWI39G0780' => 'twi', 'TWI39G0850' => 'twi', 'TWI73G1052' => 'twi', 'unitig_52.g17485' => 'ugi', 'unitig_61.g26355' => 'ugi', 'vmacro01040' => 'vma', 'vmacro16731' => 'vma', 'vmacro18270' => 'vma', 'vmacro19142' => 'vma', 'vmacro19407' => 'vma', 'vmacro19408' => 'vma', 'vmacro21899' => 'vma', 'vmacro21900' => 'vma', 'vmacro21901' => 'vma', 'VMungo0251G0490' => 'vmu', 'VMungo0251G1748' => 'vmu', 'VMungo1309G0421' => 'vmu', 'Zm00001eb086500' => 'zma', 'Zm00001eb150680' => 'zma', 'Zm00001eb162330' => 'zma', 'Zm00001eb203130' => 'zma', 'Zm00001eb369480' => 'zma', 'Zm00001eb382340' => 'zma', 'Zm00001eb416360' => 'zma' ), 'gf_id' => 'HOM05D000902', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000902' ), 'data_identifier' => 'HOM05D000902', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000902', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '663', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02470' => 'bna', 'A01p16260' => 'bna', 'A02p01680' => 'bna', 'A03p16600' => 'bna', 'A03p55660' => 'bna', 'A03p64160' => 'bna', 'A03p64170' => 'bna', 'A08p31900' => 'bna', 'A09p59530' => 'bna', 'A10p08230' => 'bna', 'A10p25090' => 'bna', 'Aa31LG3G7100' => 'aar', 'Aa31LG3G7110' => 'aar', 'Aa31LG6G13160' => 'aar', 'Aa31LG7G10770' => 'aar', 'Aa31LG7G3830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2723' => 'aag', 'Actinidia08045' => 'ach', 'Actinidia08888' => 'ach', 'Actinidia18333' => 'ach', 'Actinidia19334' => 'ach', 'Actinidia25552' => 'ach', 'Actinidia26089' => 'ach', 'Actinidia30615' => 'ach', 'Actinidia30616' => 'ach', 'Actinidia33083' => 'ach', 'Actinidia35762' => 'ach', 'Ah.02g110620' => 'amhyb', 'Ah.11g046390' => 'amhyb', 'AL1G31670' => 'aly', 'AL6G23730' => 'aly', 'AL7G14740' => 'aly', 'AL7G14750' => 'aly', 'AL7G14760' => 'aly', 'AL7G28220' => 'aly', 'AL8G24940' => 'aly', 'Aqoxy3G01665' => 'aox', 'Aqoxy3G02853' => 'aox', 'Aqoxy5G01513' => 'aox', 'Aqoxy5G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8SKA4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ75LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKDA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0LJZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7REX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZP4YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWX7I5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2QKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS0L9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPCD8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q161UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC7XCF' => 'arhy', 'AT1G19100' => 'ath', 'AT4G24970' => 'ath', 'AT4G36270' => 'ath', 'AT4G36280' => 'ath', 'AT4G36290' => 'ath', 'AT5G13130' => 'ath', 'AT5G50780' => 'ath', 'ATR0582G266' => 'atr', 'ATR0661G195' => 'atr', 'ATR1152G031' => 'atr', 'Atru.chr11.2382' => 'acertr', 'Atru.chr12.2337' => 'acertr', 'Atru.chr3.744' => 'acertr', 'Atru.chr6.1870' => 'acertr', 'Atru.chr9.2515' => 'acertr', 'AUR62004120' => 'cqu', 'AUR62005667' => 'cqu', 'AUR62007634' => 'cqu', 'AUR62008186' => 'cqu', 'AUR62008187' => 'cqu', 'AUR62008188' => 'cqu', 'AUR62027954' => 'cqu', 'AUR62028766' => 'cqu', 'AUR62028767' => 'cqu', 'AUR62028768' => 'cqu', 'AUR62028886' => 'cqu', 'AUR62029563' => 'cqu', 'AUR62038832' => 'cqu', 'BcaB01g04149' => 'bca', 'BcaB03g12940' => 'bca', 'BcaB03g13090' => 'bca', 'BcaB03g14466' => 'bca', 'BcaB05g24035' => 'bca', 'BcaC01g06050' => 'bca', 'BcaC04g19148' => 'bca', 'BcaC04g20761' => 'bca', 'BcaC06g32845' => 'bca', 'BcaC07g41274' => 'bca', 'BcaC09g50827' => 'bca', 'BcaNung00741' => 'bca', 'BcaNung00742' => 'bca', 'BcaNung01859' => 'bca', 'BcaNung03985' => 'bca', 'BcaNung03989' => 'bca', 'BcaNung05661' => 'bca', 'BolC1t00257H' => 'bol', 'BolC1t01956H' => 'bol', 'BolC2t06534H' => 'bol', 'BolC3t14334H' => 'bol', 'BolC5t30451H' => 'bol', 'BolC7t45880H' => 'bol', 'BolC7t46586H' => 'bol', 'BolC8t49301H' => 'bol', 'BolC8t51837H' => 'bol', 'BolC9t56822H' => 'bol', 'BolC9t59235H' => 'bol', 'BraA01t00234Z' => 'bra', 'BraA01t01563Z' => 'bra', 'BraA02t05147Z' => 'bra', 'BraA03t10947Z' => 'bra', 'BraA03t14633Z' => 'bra', 'BraA08t35112Z' => 'bra', 'BraA09t41330Z' => 'bra', 'BraA10t44570Z' => 'bra', 'C01p02670' => 'bna', 'C01p20260' => 'bna', 'C02p05890' => 'bna', 'C03p19530' => 'bna', 'C05p17470' => 'bna', 'C07p53900' => 'bna', 'C07p61630' => 'bna', 'C08p16800' => 'bna', 'C08p42810' => 'bna', 'C09p39480' => 'bna', 'C09p63980' => 'bna', 'CAN.G1001.7' => 'can', 'CAN.G1034.55' => 'can', 'CAN.G143.7' => 'can', 'CAN.G3340.1' => 'can', 'CAN.G358.19' => 'can', 'CAN.G373.2' => 'can', 'CAN.G674.16' => 'can', 'CAN.G674.17' => 'can', 'CAN.G674.18' => 'can', 'CAN.G732.2' => 'can', 'CAN.G732.3' => 'can', 'CAN.G993.39' => 'can', 'CANSAT01G2052' => 'cansat', 'CANSAT80G0070' => 'cansat', 'CANSAT80G0483' => 'cansat', 'CANSAT80G0625' => 'cansat', 'CARHR019690' => 'chi', 'CARHR080280' => 'chi', 'CARHR152750' => 'chi', 'CARHR152760' => 'chi', 'CARHR152770' => 'chi', 'CARHR200340' => 'chi', 'CARHR232370' => 'chi', 'CARHR244670' => 'chi', 'CARHR244680' => 'chi', 'CARHR257520' => 'chi', 'Carub.0001s1872' => 'cru', 'Carub.0006s1130' => 'cru', 'Carub.0007s0396' => 'cru', 'Carub.0007s0397' => 'cru', 'Carub.0007s1608' => 'cru', 'Carub.0008s1068' => 'cru', 'Carub.0008s1077' => 'cru', 'Ca_16158_v3' => 'car', 'Ca_17571_v3' => 'car', 'Ca_21936_v3' => 'car', 'Ca_22350_v3' => 'car', 'CBR_g22445' => 'cbr', 'CBR_g26290' => 'cbr', 'Cc04_g09610' => 'ccan', 'Cc04_g12280' => 'ccan', 'Cc07_g10230' => 'ccan', 'CDE02G0093' => 'cde', 'CDE02G0701' => 'cde', 'CDE04G1050' => 'cde', 'CDE05G1833' => 'cde', 'CDE05G3058' => 'cde', 'CDE05G3380' => 'cde', 'CDE06G0536' => 'cde', 'Cfa006923' => 'cfa', 'Cfa009402' => 'cfa', 'Cfa018751' => 'cfa', 'Cfa019164' => 'cfa', 'Cfa022935' => 'cfa', 'Ciclev10019081m.g' => 'ccl', 'Ciclev10025076m.g' => 'ccl', 'Ciclev10030712m.g' => 'ccl', 'Ciclev10033760m.g' => 'ccl', 'CiPaw.05G105600' => 'cil', 'CiPaw.08G136700' => 'cil', 'CiPaw.11G003900' => 'cil', 'CiPaw.11G023700' => 'cil', 'CiPaw.12G003700' => 'cil', 'ClCG06G017100' => 'cla', 'ClCG06G018110' => 'cla', 'ClCG07G008800' => 'cla', 'ClCG07G015330' => 'cla', 'COL.COLO4_13698' => 'col', 'COL.COLO4_16659' => 'col', 'COL.COLO4_21986' => 'col', 'COL.COLO4_24049' => 'col', 'COL.COLO4_29061' => 'col', 'COL.COLO4_29075' => 'col', 'COL.COLO4_30094' => 'col', 'Cpa.g.c33689' => 'cpa', 'Cpa.g.sc108.39' => 'cpa', 'Cpa.g.sc108.41' => 'cpa', 'Cpa.g.sc1163.1' => 'cpa', 'Cpa.g.sc4.155' => 'cpa', 'Cpa.g.sc6.194' => 'cpa', 'CsaV3_1G000340' => 'csa', 'CsaV3_1G001400' => 'csa', 'CsaV3_4G002220' => 'csa', 'CsaV3_4G005370' => 'csa', 'CSS0007487' => 'camsi', 'CSS0008066' => 'camsi', 'CSS0009120' => 'camsi', 'CSS0015512' => 'camsi', 'CSS0022409' => 'camsi', 'CSS0025358' => 'camsi', 'CSS0044547' => 'camsi', 'DCAR_013057' => 'dca', 'DCAR_015058' => 'dca', 'DCAR_016027' => 'dca', 'DCAR_017327' => 'dca', 'DCAR_020743' => 'dca', 'DCAR_026157' => 'dca', 'DCAR_032339' => 'dca', 'DCAR_032340' => 'dca', 'Dinv11200' => 'din', 'Dinv11201' => 'din', 'Dinv20631' => 'din', 'Dinv23182' => 'din', 'Dinv33466' => 'din', 'Dinv33583' => 'din', 'Dinv38565' => 'din', 'Duzib068G0200' => 'dzi', 'Duzib147G0132' => 'dzi', 'Duzib147G0635' => 'dzi', 'Duzib205G1670' => 'dzi', 'Duzib251G0606' => 'dzi', 'ECA232G3336' => 'eca', 'ECA232G3763' => 'eca', 'ECA232G4845' => 'eca', 'ECA234G1607' => 'eca', 'ECA246G0932' => 'eca', 'ECA247G0781' => 'eca', 'ECA247G1932' => 'eca', 'ECA247G2079' => 'eca', 'ECA247G3338' => 'eca', 'ECA247G4115' => 'eca', 'EL10Ac3g06552' => 'bvu', 'EL10Ac5g10721' => 'bvu', 'EL10Ac5g10722' => 'bvu', 'EL10Ac5g10723' => 'bvu', 'EL10Ac5g11361' => 'bvu', 'EL10Ac6g13553' => 'bvu', 'EL10As8g23872' => 'bvu', 'Eucgr.B00250' => 'egr', 'Eucgr.B00251' => 'egr', 'Eucgr.B03533' => 'egr', 'Eucgr.I02381' => 'egr', 'Eucgr.K02700' => 'egr', 'FAN02G0174' => 'fan', 'FAN02G3146' => 'fan', 'FAN04G1672' => 'fan', 'FAN04G2273' => 'fan', 'FAN05G2791' => 'fan', 'FAN05G4035' => 'fan', 'FAN07G0834' => 'fan', 'FAN08G1198' => 'fan', 'FAN09G4182' => 'fan', 'FAN12G0496' => 'fan', 'FAN13G1027' => 'fan', 'FAN13G2951' => 'fan', 'FAN14G0705' => 'fan', 'FAN14G0720' => 'fan', 'FAN17G0201' => 'fan', 'FAN17G2665' => 'fan', 'FAN18G1456' => 'fan', 'FAN18G1525' => 'fan', 'FAN18G3500' => 'fan', 'FAN28G2670' => 'fan', 'FvH4_1g12391' => 'fve', 'FvH4_4g23220' => 'fve', 'FvH4_5g08810' => 'fve', 'FvH4_5g28960' => 'fve', 'FvH4_6g42820' => 'fve', 'FvH4_6g51110' => 'fve', 'Glyma.02G051802' => 'gma', 'Glyma.04G185300' => 'gma', 'Glyma.05G202900' => 'gma', 'Glyma.08G010300' => 'gma', 'Glyma.16G131900' => 'gma', 'Glyma.17G087900' => 'gma', 'Gohir.A07G048600' => 'ghi', 'Gohir.A11G179000' => 'ghi', 'Gohir.A12G140900' => 'ghi', 'Gohir.A12G140950' => 'ghi', 'Gohir.A12G191700' => 'ghi', 'Gohir.A13G086300' => 'ghi', 'Gohir.D07G052900' => 'ghi', 'Gohir.D11G186600' => 'ghi', 'Gohir.D12G145575' => 'ghi', 'Gohir.D12G145650' => 'ghi', 'Gohir.D12G145725' => 'ghi', 'Gohir.D12G194050' => 'ghi', 'Gohir.D13G091800' => 'ghi', 'Gorai.001G055900' => 'gra', 'Gorai.007G198400' => 'gra', 'Gorai.008G157000' => 'gra', 'Gorai.008G157100' => 'gra', 'Gorai.008G208700' => 'gra', 'Gorai.010G138700' => 'gra', 'GSVIVG01000977001' => 'vvi', 'GSVIVG01007708001' => 'vvi', 'GSVIVG01008587001' => 'vvi', 'GSVIVG01018849001' => 'vvi', 'GSVIVG01032432001' => 'vvi', 'HanXRQChr02g0034131' => 'han', 'HanXRQChr02g0035981' => 'han', 'HanXRQChr02g0035991' => 'han', 'HanXRQChr05g0155611' => 'han', 'HanXRQChr05g0155621' => 'han', 'HanXRQChr08g0236501' => 'han', 'HanXRQChr09g0261321' => 'han', 'HanXRQChr09g0272081' => 'han', 'HanXRQChr10g0310741' => 'han', 'HanXRQChr11g0325591' => 'han', 'HanXRQChr12g0385691' => 'han', 'HanXRQChr13g0387801' => 'han', 'HanXRQChr15g0463011' => 'han', 'Haze_03826' => 'cav', 'Haze_03827' => 'cav', 'Haze_07183' => 'cav', 'Haze_07537' => 'cav', 'Haze_07539' => 'cav', 'Haze_12461' => 'cav', 'Haze_16115' => 'cav', 'Haze_16808' => 'cav', 'Haze_18531' => 'cav', 'Hma1.2p1_0046F.1_g026700' => 'hma', 'Hma1.2p1_0046F.1_g026710' => 'hma', 'Hma1.2p1_0168F.1_g074340' => 'hma', 'Hma1.2p1_0266F.1_g107030' => 'hma', 'Hma1.2p1_0266F.1_g107060' => 'hma', 'Hma1.2p1_0275F.1_g110510' => 'hma', 'Hma1.2p1_0592F.1_g185490' => 'hma', 'Hma1.2p1_0592F.1_g185500' => 'hma', 'Hma1.2p1_0592F.1_g185510' => 'hma', 'Hma1.2p1_0592F.1_g185520' => 'hma', 'Hma1.2p1_0592F.1_g185530' => 'hma', 'Hma1.2p1_0818F.1_g223450' => 'hma', 'HPP92_009708' => 'vpl', 'HPP92_009793' => 'vpl', 'HPP92_009796' => 'vpl', 'HPP92_009797' => 'vpl', 'HPP92_014940' => 'vpl', 'HPP92_014988' => 'vpl', 'Hund02463' => 'sun', 'Hund02760' => 'sun', 'Hund05071' => 'sun', 'Hund10108' => 'sun', 'Hund11204' => 'sun', 'Hund14016' => 'sun', 'Hund16464' => 'sun', 'Lalb_Chr09g0333391' => 'lal', 'Lalb_Chr11g0070461' => 'lal', 'Lalb_Chr12g0201671' => 'lal', 'Lalb_Chr13g0297161' => 'lal', 'Lj1g0002823' => 'lja', 'Lj3C1074T6' => 'lonja', 'Lj4A212T28' => 'lonja', 'Lj4g0005516' => 'lja', 'Lj4g0013705' => 'lja', 'Lj4g0027865' => 'lja', 'Lj5C92G16' => 'lonja', 'Lj5C92T12' => 'lonja', 'Lj7C596T3' => 'lonja', 'Lj9A446G59' => 'lonja', 'Lj9A482G21' => 'lonja', 'Lsat_1_v5_gn_1_28261' => 'lsa', 'Lsat_1_v5_gn_1_28281' => 'lsa', 'Lsat_1_v5_gn_1_32721' => 'lsa', 'Lsat_1_v5_gn_4_151760' => 'lsa', 'Lsat_1_v5_gn_4_2120' => 'lsa', 'Lsat_1_v5_gn_4_75761' => 'lsa', 'Lsat_1_v5_gn_5_10920' => 'lsa', 'Manes.02G099900' => 'mes', 'Manes.11G096200' => 'mes', 'Manes.12G007200' => 'mes', 'Manes.14G048300' => 'mes', 'Manes.17G114700' => 'mes', 'Mapoly0002s0070' => 'mpo', 'Mapoly0029s0099' => 'mpo', 'MBI07_g24742_MAGBIO' => 'mbi', 'MBI10_g27988_MAGBIO' => 'mbi', 'MBI11_g13057_MAGBIO' => 'mbi', 'MD02G1137200' => 'mdo', 'MD06G1137200' => 'mdo', 'MD07G1122300' => 'mdo', 'MD09G1078200' => 'mdo', 'MD13G1123700' => 'mdo', 'MD14G1151900' => 'mdo', 'MD17G1030900' => 'mdo', 'MD17G1068200' => 'mdo', 'MD17G1068600' => 'mdo', 'Medtr3g077540' => 'mtr', 'Medtr4g105530' => 'mtr', 'Medtr8g076580' => 'mtr', 'Medtr8g076590' => 'mtr', 'Medtr8g096410' => 'mtr', 'MELO3C016411.2' => 'cme', 'MELO3C017780.2' => 'cme', 'MELO3C022560.2' => 'cme', 'MELO3C026187.2' => 'cme', 'MELO3C026286.2' => 'cme', 'MELO3C032854.2' => 'cme', 'Migut.H02495' => 'egut', 'Migut.I00561' => 'egut', 'Migut.K01015' => 'egut', 'Migut.K01016' => 'egut', 'Migut.L00743' => 'egut', 'Migut.L00744' => 'egut', 'Migut.L00746' => 'egut', 'Migut.L00798' => 'egut', 'Migut.L00799' => 'egut', 'Migut.N02096' => 'egut', 'MSTRG.11259' => 'ama', 'MSTRG.23142' => 'ama', 'MSTRG.2499' => 'ama', 'Nitab4.5_0000003g0730' => 'nta', 'Nitab4.5_0000137g0020' => 'nta', 'Nitab4.5_0000721g0210' => 'nta', 'Nitab4.5_0000723g0050' => 'nta', 'Nitab4.5_0000913g0070' => 'nta', 'Nitab4.5_0001332g0040' => 'nta', 'Nitab4.5_0001771g0050' => 'nta', 'Nitab4.5_0001918g0050' => 'nta', 'Nitab4.5_0002686g0030' => 'nta', 'Nitab4.5_0003156g0020' => 'nta', 'Nitab4.5_0003383g0040' => 'nta', 'Nitab4.5_0003918g0010' => 'nta', 'Nitab4.5_0006760g0010' => 'nta', 'Nn1g05981' => 'nnu', 'Nn1g06288' => 'nnu', 'Nn3g16371' => 'nnu', 'Nn3g16786' => 'nnu', 'Nn4g22232' => 'nnu', 'Oeu005144.1' => 'oeu', 'Oeu005145.1' => 'oeu', 'Oeu011348.1' => 'oeu', 'Oeu016415.1' => 'oeu', 'Oeu023501.1' => 'oeu', 'Oeu044473.1' => 'oeu', 'Oeu048892.2' => 'oeu', 'Os01g0549200' => 'osa', 'Os02g0469300' => 'osa', 'Os04g0311100' => 'osa', 'Os06g0474900' => 'osa', 'Os10g0181700' => 'osa', 'Os11g0454800' => 'osa', 'Peaxi162Scf00037g00714' => 'pax', 'Peaxi162Scf00084g01217' => 'pax', 'Peaxi162Scf00257g00217' => 'pax', 'Peaxi162Scf00516g00215' => 'pax', 'Peaxi162Scf00689g00123' => 'pax', 'PGR044G2719' => 'pgr', 'PGR083G1360' => 'pgr', 'PGR102G2849' => 'pgr', 'PGR119G2534' => 'pgr', 'PGSC0003DMG400003538' => 'stu', 'PGSC0003DMG400028138' => 'stu', 'PGSC0003DMG400031732' => 'stu', 'PGSC0003DMG400038165' => 'stu', 'Phvul.002G284600' => 'pvu', 'Phvul.003G258200' => 'pvu', 'Phvul.009G176500' => 'pvu', 'Potri.003G167201' => 'ptr', 'Potri.005G118400' => 'ptr', 'Potri.012G089000' => 'ptr', 'Potri.012G102800' => 'ptr', 'Potri.015G079400' => 'ptr', 'Potri.015G100900' => 'ptr', 'Pp3c14_9810' => 'ppa', 'Pp3c15_10450' => 'ppa', 'Pp3c20_19150' => 'ppa', 'Pp3c23_12740' => 'ppa', 'Pp3c23_6310' => 'ppa', 'Pp3c24_3720' => 'ppa', 'Pp3c27_2580' => 'ppa', 'Pp3c9_8990' => 'ppa', 'PRCOL_00002854' => 'pco', 'Prupe.1G221200' => 'ppe', 'Prupe.3G289000' => 'ppe', 'Prupe.5G147000' => 'ppe', 'Prupe.6G157300' => 'ppe', 'Prupe.7G163400' => 'ppe', 'Psat0s2177g0040' => 'psa', 'Psat3g174760' => 'psa', 'Psat3g192160' => 'psa', 'Psat4g058520' => 'psa', 'Psat4g096840' => 'psa', 'Psat7g037320' => 'psa', 'PSO017G1274' => 'pso', 'PSO017G5166' => 'pso', 'PSO063G4558' => 'pso', 'PSO170G4458' => 'pso', 'PSO170G5005' => 'pso', 'PSO210G6156' => 'pso', 'PSO210G6635' => 'pso', 'PSO210G7397' => 'pso', 'PSO210G7700' => 'pso', 'PSO455G0035' => 'pso', 'PSO455G0180' => 'pso', 'PSO478G4515' => 'pso', 'PSO832G1305' => 'pso', 'PSO832G3489' => 'pso', 'QL02p075247' => 'qlo', 'QL03p051148' => 'qlo', 'QL05p010313' => 'qlo', 'QL06p034627' => 'qlo', 'QL10p001889' => 'qlo', 'QL10p010846' => 'qlo', 'RcHm_v2.0_Chr1g0350621' => 'rch', 'RcHm_v2.0_Chr1g0350641' => 'rch', 'RcHm_v2.0_Chr2g0092891' => 'rch', 'RcHm_v2.0_Chr2g0100251' => 'rch', 'RcHm_v2.0_Chr2g0158661' => 'rch', 'RcHm_v2.0_Chr2g0172741' => 'rch', 'RcHm_v2.0_Chr4g0429571' => 'rch', 'RcHm_v2.0_Chr5g0042471' => 'rch', 'RcHm_v2.0_Chr7g0189451' => 'rch', 'Rhsim08G0052000' => 'rsi', 'Rhsim08G0174400' => 'rsi', 'Rhsim08G0193200' => 'rsi', 'Rhsim10G0214800' => 'rsi', 'Rhsim10G0214900' => 'rsi', 'Rhsim10G0215000' => 'rsi', 'Rhsim12G0022900' => 'rsi', 'Rhsim12G0177500' => 'rsi', 'Rhsim12G0177700' => 'rsi', 'Sabra03G0122600' => 'sbr', 'Sabra05G0097400' => 'sbr', 'Sabra12G0064100' => 'sbr', 'Sabra15G0121300' => 'sbr', 'SalBow2G0642' => 'sbo', 'SalBow5G2667' => 'sbo', 'SalBow5G4873' => 'sbo', 'SalBow8G2395' => 'sbo', 'Sc03g0003290' => 'sci', 'Sc10g0010130' => 'sci', 'Sc22g0003650' => 'sci', 'Sed0001603' => 'sed', 'Sed0004259' => 'sed', 'Sed0006789' => 'sed', 'Sed0011838' => 'sed', 'Sed0012964' => 'sed', 'Sed0016383' => 'sed', 'Sed0019010' => 'sed', 'Sed0020188' => 'sed', 'SEGI_04702' => 'sgi', 'SEGI_17231' => 'sgi', 'SEGI_18877' => 'sgi', 'SEGI_25196' => 'sgi', 'SEGI_25515' => 'sgi', 'SEGI_28445' => 'sgi', 'SEGI_37452' => 'sgi', 'SGA_v2.0_scaffold188G40336' => 'sas', 'SGA_v2.0_scaffold228G43247' => 'sas', 'SGA_v2.0_scaffold280G46853' => 'sas', 'SGA_v2.0_scaffold34G13808' => 'sas', 'SGA_v2.0_scaffold40G15576' => 'sas', 'SGA_v2.0_scaffold611G53188' => 'sas', 'SGA_v2.0_scaffold78G25461' => 'sas', 'SGA_v2.0_scaffold90G27888' => 'sas', 'SHI08601' => 'shi', 'SHI08606' => 'shi', 'SHI17117' => 'shi', 'SHI17119' => 'shi', 'SMO118G0201' => 'smo', 'SMO169G0247' => 'smo', 'SMO176G0006' => 'smo', 'SMO176G0015' => 'smo', 'SMO202G0006' => 'smo', 'SMO240G0050' => 'smo', 'SMO286G0009' => 'smo', 'SMO338G0033' => 'smo', 'SMO356G0533' => 'smo', 'SMO364G0382' => 'smo', 'SMO367G0166' => 'smo', 'SMO367G1098' => 'smo', 'Solyc01g009920.3' => 'sly', 'Solyc01g099300.3' => 'sly', 'Solyc02g084700.3' => 'sly', 'Solyc03g097520.3' => 'sly', 'Solyc06g071580.3' => 'sly', 'Solyc10g081760.3' => 'sly', 'Sopen01g005480' => 'spe', 'Sopen01g042850' => 'spe', 'Sopen02g029370' => 'spe', 'Sopen03g028280' => 'spe', 'Sopen06g027870' => 'spe', 'Sopen10g032270' => 'spe', 'Sp5g18180' => 'spa', 'Sp6g12880' => 'spa', 'Sp6g30850' => 'spa', 'Sp7g22960' => 'spa', 'Sp7g34010' => 'spa', 'SpUn1326_0010' => 'spa', 'TAR371G0242' => 'tar', 'TAR622G0638' => 'tar', 'TAR628G1548' => 'tar', 'TAR629G1079' => 'tar', 'TAR629G3413' => 'tar', 'THA.LOC104804249' => 'tha', 'THA.LOC104808315' => 'tha', 'THA.LOC104809238' => 'tha', 'THA.LOC104825484' => 'tha', 'Thecc.01G025500' => 'tca', 'Thecc.03G015800' => 'tca', 'Thecc.03G018000' => 'tca', 'Thecc.03G134800' => 'tca', 'Thecc.04G014700' => 'tca', 'Thhalv10006991m.g' => 'esa', 'Thhalv10012707m.g' => 'esa', 'Thhalv10015739m.g' => 'esa', 'Thhalv10024553m.g' => 'esa', 'Thhalv10024673m.g' => 'esa', 'Thhalv10029187m.g' => 'esa', 'TPR.G12971' => 'tpr', 'TPR.G29396' => 'tpr', 'TPR.G33376' => 'tpr', 'TPR.G35508' => 'tpr', 'TPR.G35516' => 'tpr', 'TPR.G37317' => 'tpr', 'TPR.G37389' => 'tpr', 'TPR.G37523' => 'tpr', 'TPR.G559' => 'tpr', 'TWI14G0070' => 'twi', 'TWI14G0729' => 'twi', 'TWI18G0596' => 'twi', 'TWI39G0780' => 'twi', 'TWI39G0850' => 'twi', 'TWI73G1052' => 'twi', 'unitig_52.g17485' => 'ugi', 'unitig_61.g26355' => 'ugi', 'vmacro01040' => 'vma', 'vmacro16731' => 'vma', 'vmacro18270' => 'vma', 'vmacro19142' => 'vma', 'vmacro19407' => 'vma', 'vmacro19408' => 'vma', 'vmacro21899' => 'vma', 'vmacro21900' => 'vma', 'vmacro21901' => 'vma', 'VMungo0251G0490' => 'vmu', 'VMungo0251G1748' => 'vmu', 'VMungo1309G0421' => 'vmu', 'Zm00001eb086500' => 'zma', 'Zm00001eb150680' => 'zma', 'Zm00001eb162330' => 'zma', 'Zm00001eb203130' => 'zma', 'Zm00001eb369480' => 'zma', 'Zm00001eb382340' => 'zma', 'Zm00001eb416360' => 'zma' ) $gf_id = 'HOM05D000902' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000902' ) $data_identifier = 'HOM05D000902' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 13, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 10, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 6, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 9, 'hma' => (int) 12, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 4, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 6, 'ppa' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 6, 'rch' => (int) 9, 'rsi' => (int) 9, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 12, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 3, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416360' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000902', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '663', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02470' => 'bna', 'A01p16260' => 'bna', 'A02p01680' => 'bna', 'A03p16600' => 'bna', 'A03p55660' => 'bna', 'A03p64160' => 'bna', 'A03p64170' => 'bna', 'A08p31900' => 'bna', 'A09p59530' => 'bna', 'A10p08230' => 'bna', 'A10p25090' => 'bna', 'Aa31LG3G7100' => 'aar', 'Aa31LG3G7110' => 'aar', 'Aa31LG6G13160' => 'aar', 'Aa31LG7G10770' => 'aar', 'Aa31LG7G3830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2723' => 'aag', 'Actinidia08045' => 'ach', 'Actinidia08888' => 'ach', 'Actinidia18333' => 'ach', 'Actinidia19334' => 'ach', 'Actinidia25552' => 'ach', 'Actinidia26089' => 'ach', 'Actinidia30615' => 'ach', 'Actinidia30616' => 'ach', 'Actinidia33083' => 'ach', 'Actinidia35762' => 'ach', 'Ah.02g110620' => 'amhyb', 'Ah.11g046390' => 'amhyb', 'AL1G31670' => 'aly', 'AL6G23730' => 'aly', 'AL7G14740' => 'aly', 'AL7G14750' => 'aly', 'AL7G14760' => 'aly', 'AL7G28220' => 'aly', 'AL8G24940' => 'aly', 'Aqoxy3G01665' => 'aox', 'Aqoxy3G02853' => 'aox', 'Aqoxy5G01513' => 'aox', 'Aqoxy5G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8SKA4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ75LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKDA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0LJZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7REX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZP4YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWX7I5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2QKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS0L9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPCD8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q161UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC7XCF' => 'arhy', 'AT1G19100' => 'ath', 'AT4G24970' => 'ath', 'AT4G36270' => 'ath', 'AT4G36280' => 'ath', 'AT4G36290' => 'ath', 'AT5G13130' => 'ath', 'AT5G50780' => 'ath', 'ATR0582G266' => 'atr', 'ATR0661G195' => 'atr', 'ATR1152G031' => 'atr', 'Atru.chr11.2382' => 'acertr', 'Atru.chr12.2337' => 'acertr', 'Atru.chr3.744' => 'acertr', 'Atru.chr6.1870' => 'acertr', 'Atru.chr9.2515' => 'acertr', 'AUR62004120' => 'cqu', 'AUR62005667' => 'cqu', 'AUR62007634' => 'cqu', 'AUR62008186' => 'cqu', 'AUR62008187' => 'cqu', 'AUR62008188' => 'cqu', 'AUR62027954' => 'cqu', 'AUR62028766' => 'cqu', 'AUR62028767' => 'cqu', 'AUR62028768' => 'cqu', 'AUR62028886' => 'cqu', 'AUR62029563' => 'cqu', 'AUR62038832' => 'cqu', 'BcaB01g04149' => 'bca', 'BcaB03g12940' => 'bca', 'BcaB03g13090' => 'bca', 'BcaB03g14466' => 'bca', 'BcaB05g24035' => 'bca', 'BcaC01g06050' => 'bca', 'BcaC04g19148' => 'bca', 'BcaC04g20761' => 'bca', 'BcaC06g32845' => 'bca', 'BcaC07g41274' => 'bca', 'BcaC09g50827' => 'bca', 'BcaNung00741' => 'bca', 'BcaNung00742' => 'bca', 'BcaNung01859' => 'bca', 'BcaNung03985' => 'bca', 'BcaNung03989' => 'bca', 'BcaNung05661' => 'bca', 'BolC1t00257H' => 'bol', 'BolC1t01956H' => 'bol', 'BolC2t06534H' => 'bol', 'BolC3t14334H' => 'bol', 'BolC5t30451H' => 'bol', 'BolC7t45880H' => 'bol', 'BolC7t46586H' => 'bol', 'BolC8t49301H' => 'bol', 'BolC8t51837H' => 'bol', 'BolC9t56822H' => 'bol', 'BolC9t59235H' => 'bol', 'BraA01t00234Z' => 'bra', 'BraA01t01563Z' => 'bra', 'BraA02t05147Z' => 'bra', 'BraA03t10947Z' => 'bra', 'BraA03t14633Z' => 'bra', 'BraA08t35112Z' => 'bra', 'BraA09t41330Z' => 'bra', 'BraA10t44570Z' => 'bra', 'C01p02670' => 'bna', 'C01p20260' => 'bna', 'C02p05890' => 'bna', 'C03p19530' => 'bna', 'C05p17470' => 'bna', 'C07p53900' => 'bna', 'C07p61630' => 'bna', 'C08p16800' => 'bna', 'C08p42810' => 'bna', 'C09p39480' => 'bna', 'C09p63980' => 'bna', 'CAN.G1001.7' => 'can', 'CAN.G1034.55' => 'can', 'CAN.G143.7' => 'can', 'CAN.G3340.1' => 'can', 'CAN.G358.19' => 'can', 'CAN.G373.2' => 'can', 'CAN.G674.16' => 'can', 'CAN.G674.17' => 'can', 'CAN.G674.18' => 'can', 'CAN.G732.2' => 'can', 'CAN.G732.3' => 'can', 'CAN.G993.39' => 'can', 'CANSAT01G2052' => 'cansat', 'CANSAT80G0070' => 'cansat', 'CANSAT80G0483' => 'cansat', 'CANSAT80G0625' => 'cansat', 'CARHR019690' => 'chi', 'CARHR080280' => 'chi', 'CARHR152750' => 'chi', 'CARHR152760' => 'chi', 'CARHR152770' => 'chi', 'CARHR200340' => 'chi', 'CARHR232370' => 'chi', 'CARHR244670' => 'chi', 'CARHR244680' => 'chi', 'CARHR257520' => 'chi', 'Carub.0001s1872' => 'cru', 'Carub.0006s1130' => 'cru', 'Carub.0007s0396' => 'cru', 'Carub.0007s0397' => 'cru', 'Carub.0007s1608' => 'cru', 'Carub.0008s1068' => 'cru', 'Carub.0008s1077' => 'cru', 'Ca_16158_v3' => 'car', 'Ca_17571_v3' => 'car', 'Ca_21936_v3' => 'car', 'Ca_22350_v3' => 'car', 'CBR_g22445' => 'cbr', 'CBR_g26290' => 'cbr', 'Cc04_g09610' => 'ccan', 'Cc04_g12280' => 'ccan', 'Cc07_g10230' => 'ccan', 'CDE02G0093' => 'cde', 'CDE02G0701' => 'cde', 'CDE04G1050' => 'cde', 'CDE05G1833' => 'cde', 'CDE05G3058' => 'cde', 'CDE05G3380' => 'cde', 'CDE06G0536' => 'cde', 'Cfa006923' => 'cfa', 'Cfa009402' => 'cfa', 'Cfa018751' => 'cfa', 'Cfa019164' => 'cfa', 'Cfa022935' => 'cfa', 'Ciclev10019081m.g' => 'ccl', 'Ciclev10025076m.g' => 'ccl', 'Ciclev10030712m.g' => 'ccl', 'Ciclev10033760m.g' => 'ccl', 'CiPaw.05G105600' => 'cil', 'CiPaw.08G136700' => 'cil', 'CiPaw.11G003900' => 'cil', 'CiPaw.11G023700' => 'cil', 'CiPaw.12G003700' => 'cil', 'ClCG06G017100' => 'cla', 'ClCG06G018110' => 'cla', 'ClCG07G008800' => 'cla', 'ClCG07G015330' => 'cla', 'COL.COLO4_13698' => 'col', 'COL.COLO4_16659' => 'col', 'COL.COLO4_21986' => 'col', 'COL.COLO4_24049' => 'col', 'COL.COLO4_29061' => 'col', 'COL.COLO4_29075' => 'col', 'COL.COLO4_30094' => 'col', 'Cpa.g.c33689' => 'cpa', 'Cpa.g.sc108.39' => 'cpa', 'Cpa.g.sc108.41' => 'cpa', 'Cpa.g.sc1163.1' => 'cpa', 'Cpa.g.sc4.155' => 'cpa', 'Cpa.g.sc6.194' => 'cpa', 'CsaV3_1G000340' => 'csa', 'CsaV3_1G001400' => 'csa', 'CsaV3_4G002220' => 'csa', 'CsaV3_4G005370' => 'csa', 'CSS0007487' => 'camsi', 'CSS0008066' => 'camsi', 'CSS0009120' => 'camsi', 'CSS0015512' => 'camsi', 'CSS0022409' => 'camsi', 'CSS0025358' => 'camsi', 'CSS0044547' => 'camsi', 'DCAR_013057' => 'dca', 'DCAR_015058' => 'dca', 'DCAR_016027' => 'dca', 'DCAR_017327' => 'dca', 'DCAR_020743' => 'dca', 'DCAR_026157' => 'dca', 'DCAR_032339' => 'dca', 'DCAR_032340' => 'dca', 'Dinv11200' => 'din', 'Dinv11201' => 'din', 'Dinv20631' => 'din', 'Dinv23182' => 'din', 'Dinv33466' => 'din', 'Dinv33583' => 'din', 'Dinv38565' => 'din', 'Duzib068G0200' => 'dzi', 'Duzib147G0132' => 'dzi', 'Duzib147G0635' => 'dzi', 'Duzib205G1670' => 'dzi', 'Duzib251G0606' => 'dzi', 'ECA232G3336' => 'eca', 'ECA232G3763' => 'eca', 'ECA232G4845' => 'eca', 'ECA234G1607' => 'eca', 'ECA246G0932' => 'eca', 'ECA247G0781' => 'eca', 'ECA247G1932' => 'eca', 'ECA247G2079' => 'eca', 'ECA247G3338' => 'eca', 'ECA247G4115' => 'eca', 'EL10Ac3g06552' => 'bvu', 'EL10Ac5g10721' => 'bvu', 'EL10Ac5g10722' => 'bvu', 'EL10Ac5g10723' => 'bvu', 'EL10Ac5g11361' => 'bvu', 'EL10Ac6g13553' => 'bvu', 'EL10As8g23872' => 'bvu', 'Eucgr.B00250' => 'egr', 'Eucgr.B00251' => 'egr', 'Eucgr.B03533' => 'egr', 'Eucgr.I02381' => 'egr', 'Eucgr.K02700' => 'egr', 'FAN02G0174' => 'fan', 'FAN02G3146' => 'fan', 'FAN04G1672' => 'fan', 'FAN04G2273' => 'fan', 'FAN05G2791' => 'fan', 'FAN05G4035' => 'fan', 'FAN07G0834' => 'fan', 'FAN08G1198' => 'fan', 'FAN09G4182' => 'fan', 'FAN12G0496' => 'fan', 'FAN13G1027' => 'fan', 'FAN13G2951' => 'fan', 'FAN14G0705' => 'fan', 'FAN14G0720' => 'fan', 'FAN17G0201' => 'fan', 'FAN17G2665' => 'fan', 'FAN18G1456' => 'fan', 'FAN18G1525' => 'fan', 'FAN18G3500' => 'fan', 'FAN28G2670' => 'fan', 'FvH4_1g12391' => 'fve', 'FvH4_4g23220' => 'fve', 'FvH4_5g08810' => 'fve', 'FvH4_5g28960' => 'fve', 'FvH4_6g42820' => 'fve', 'FvH4_6g51110' => 'fve', 'Glyma.02G051802' => 'gma', 'Glyma.04G185300' => 'gma', 'Glyma.05G202900' => 'gma', 'Glyma.08G010300' => 'gma', 'Glyma.16G131900' => 'gma', 'Glyma.17G087900' => 'gma', 'Gohir.A07G048600' => 'ghi', 'Gohir.A11G179000' => 'ghi', 'Gohir.A12G140900' => 'ghi', 'Gohir.A12G140950' => 'ghi', 'Gohir.A12G191700' => 'ghi', 'Gohir.A13G086300' => 'ghi', 'Gohir.D07G052900' => 'ghi', 'Gohir.D11G186600' => 'ghi', 'Gohir.D12G145575' => 'ghi', 'Gohir.D12G145650' => 'ghi', 'Gohir.D12G145725' => 'ghi', 'Gohir.D12G194050' => 'ghi', 'Gohir.D13G091800' => 'ghi', 'Gorai.001G055900' => 'gra', 'Gorai.007G198400' => 'gra', 'Gorai.008G157000' => 'gra', 'Gorai.008G157100' => 'gra', 'Gorai.008G208700' => 'gra', 'Gorai.010G138700' => 'gra', 'GSVIVG01000977001' => 'vvi', 'GSVIVG01007708001' => 'vvi', 'GSVIVG01008587001' => 'vvi', 'GSVIVG01018849001' => 'vvi', 'GSVIVG01032432001' => 'vvi', 'HanXRQChr02g0034131' => 'han', 'HanXRQChr02g0035981' => 'han', 'HanXRQChr02g0035991' => 'han', 'HanXRQChr05g0155611' => 'han', 'HanXRQChr05g0155621' => 'han', 'HanXRQChr08g0236501' => 'han', 'HanXRQChr09g0261321' => 'han', 'HanXRQChr09g0272081' => 'han', 'HanXRQChr10g0310741' => 'han', 'HanXRQChr11g0325591' => 'han', 'HanXRQChr12g0385691' => 'han', 'HanXRQChr13g0387801' => 'han', 'HanXRQChr15g0463011' => 'han', 'Haze_03826' => 'cav', 'Haze_03827' => 'cav', 'Haze_07183' => 'cav', 'Haze_07537' => 'cav', 'Haze_07539' => 'cav', 'Haze_12461' => 'cav', 'Haze_16115' => 'cav', 'Haze_16808' => 'cav', 'Haze_18531' => 'cav', 'Hma1.2p1_0046F.1_g026700' => 'hma', 'Hma1.2p1_0046F.1_g026710' => 'hma', 'Hma1.2p1_0168F.1_g074340' => 'hma', 'Hma1.2p1_0266F.1_g107030' => 'hma', 'Hma1.2p1_0266F.1_g107060' => 'hma', 'Hma1.2p1_0275F.1_g110510' => 'hma', 'Hma1.2p1_0592F.1_g185490' => 'hma', 'Hma1.2p1_0592F.1_g185500' => 'hma', 'Hma1.2p1_0592F.1_g185510' => 'hma', 'Hma1.2p1_0592F.1_g185520' => 'hma', 'Hma1.2p1_0592F.1_g185530' => 'hma', 'Hma1.2p1_0818F.1_g223450' => 'hma', 'HPP92_009708' => 'vpl', 'HPP92_009793' => 'vpl', 'HPP92_009796' => 'vpl', 'HPP92_009797' => 'vpl', 'HPP92_014940' => 'vpl', 'HPP92_014988' => 'vpl', 'Hund02463' => 'sun', 'Hund02760' => 'sun', 'Hund05071' => 'sun', 'Hund10108' => 'sun', 'Hund11204' => 'sun', 'Hund14016' => 'sun', 'Hund16464' => 'sun', 'Lalb_Chr09g0333391' => 'lal', 'Lalb_Chr11g0070461' => 'lal', 'Lalb_Chr12g0201671' => 'lal', 'Lalb_Chr13g0297161' => 'lal', 'Lj1g0002823' => 'lja', 'Lj3C1074T6' => 'lonja', 'Lj4A212T28' => 'lonja', 'Lj4g0005516' => 'lja', 'Lj4g0013705' => 'lja', 'Lj4g0027865' => 'lja', 'Lj5C92G16' => 'lonja', 'Lj5C92T12' => 'lonja', 'Lj7C596T3' => 'lonja', 'Lj9A446G59' => 'lonja', 'Lj9A482G21' => 'lonja', 'Lsat_1_v5_gn_1_28261' => 'lsa', 'Lsat_1_v5_gn_1_28281' => 'lsa', 'Lsat_1_v5_gn_1_32721' => 'lsa', 'Lsat_1_v5_gn_4_151760' => 'lsa', 'Lsat_1_v5_gn_4_2120' => 'lsa', 'Lsat_1_v5_gn_4_75761' => 'lsa', 'Lsat_1_v5_gn_5_10920' => 'lsa', 'Manes.02G099900' => 'mes', 'Manes.11G096200' => 'mes', 'Manes.12G007200' => 'mes', 'Manes.14G048300' => 'mes', 'Manes.17G114700' => 'mes', 'Mapoly0002s0070' => 'mpo', 'Mapoly0029s0099' => 'mpo', 'MBI07_g24742_MAGBIO' => 'mbi', 'MBI10_g27988_MAGBIO' => 'mbi', 'MBI11_g13057_MAGBIO' => 'mbi', 'MD02G1137200' => 'mdo', 'MD06G1137200' => 'mdo', 'MD07G1122300' => 'mdo', 'MD09G1078200' => 'mdo', 'MD13G1123700' => 'mdo', 'MD14G1151900' => 'mdo', 'MD17G1030900' => 'mdo', 'MD17G1068200' => 'mdo', 'MD17G1068600' => 'mdo', 'Medtr3g077540' => 'mtr', 'Medtr4g105530' => 'mtr', 'Medtr8g076580' => 'mtr', 'Medtr8g076590' => 'mtr', 'Medtr8g096410' => 'mtr', 'MELO3C016411.2' => 'cme', 'MELO3C017780.2' => 'cme', 'MELO3C022560.2' => 'cme', 'MELO3C026187.2' => 'cme', 'MELO3C026286.2' => 'cme', 'MELO3C032854.2' => 'cme', 'Migut.H02495' => 'egut', 'Migut.I00561' => 'egut', 'Migut.K01015' => 'egut', 'Migut.K01016' => 'egut', 'Migut.L00743' => 'egut', 'Migut.L00744' => 'egut', 'Migut.L00746' => 'egut', 'Migut.L00798' => 'egut', 'Migut.L00799' => 'egut', 'Migut.N02096' => 'egut', 'MSTRG.11259' => 'ama', 'MSTRG.23142' => 'ama', 'MSTRG.2499' => 'ama', 'Nitab4.5_0000003g0730' => 'nta', 'Nitab4.5_0000137g0020' => 'nta', 'Nitab4.5_0000721g0210' => 'nta', 'Nitab4.5_0000723g0050' => 'nta', 'Nitab4.5_0000913g0070' => 'nta', 'Nitab4.5_0001332g0040' => 'nta', 'Nitab4.5_0001771g0050' => 'nta', 'Nitab4.5_0001918g0050' => 'nta', 'Nitab4.5_0002686g0030' => 'nta', 'Nitab4.5_0003156g0020' => 'nta', 'Nitab4.5_0003383g0040' => 'nta', 'Nitab4.5_0003918g0010' => 'nta', 'Nitab4.5_0006760g0010' => 'nta', 'Nn1g05981' => 'nnu', 'Nn1g06288' => 'nnu', 'Nn3g16371' => 'nnu', 'Nn3g16786' => 'nnu', 'Nn4g22232' => 'nnu', 'Oeu005144.1' => 'oeu', 'Oeu005145.1' => 'oeu', 'Oeu011348.1' => 'oeu', 'Oeu016415.1' => 'oeu', 'Oeu023501.1' => 'oeu', 'Oeu044473.1' => 'oeu', 'Oeu048892.2' => 'oeu', 'Os01g0549200' => 'osa', 'Os02g0469300' => 'osa', 'Os04g0311100' => 'osa', 'Os06g0474900' => 'osa', 'Os10g0181700' => 'osa', 'Os11g0454800' => 'osa', 'Peaxi162Scf00037g00714' => 'pax', 'Peaxi162Scf00084g01217' => 'pax', 'Peaxi162Scf00257g00217' => 'pax', 'Peaxi162Scf00516g00215' => 'pax', 'Peaxi162Scf00689g00123' => 'pax', 'PGR044G2719' => 'pgr', 'PGR083G1360' => 'pgr', 'PGR102G2849' => 'pgr', 'PGR119G2534' => 'pgr', 'PGSC0003DMG400003538' => 'stu', 'PGSC0003DMG400028138' => 'stu', 'PGSC0003DMG400031732' => 'stu', 'PGSC0003DMG400038165' => 'stu', 'Phvul.002G284600' => 'pvu', 'Phvul.003G258200' => 'pvu', 'Phvul.009G176500' => 'pvu', 'Potri.003G167201' => 'ptr', 'Potri.005G118400' => 'ptr', 'Potri.012G089000' => 'ptr', 'Potri.012G102800' => 'ptr', 'Potri.015G079400' => 'ptr', 'Potri.015G100900' => 'ptr', 'Pp3c14_9810' => 'ppa', 'Pp3c15_10450' => 'ppa', 'Pp3c20_19150' => 'ppa', 'Pp3c23_12740' => 'ppa', 'Pp3c23_6310' => 'ppa', 'Pp3c24_3720' => 'ppa', 'Pp3c27_2580' => 'ppa', 'Pp3c9_8990' => 'ppa', 'PRCOL_00002854' => 'pco', 'Prupe.1G221200' => 'ppe', 'Prupe.3G289000' => 'ppe', 'Prupe.5G147000' => 'ppe', 'Prupe.6G157300' => 'ppe', 'Prupe.7G163400' => 'ppe', 'Psat0s2177g0040' => 'psa', 'Psat3g174760' => 'psa', 'Psat3g192160' => 'psa', 'Psat4g058520' => 'psa', 'Psat4g096840' => 'psa', 'Psat7g037320' => 'psa', 'PSO017G1274' => 'pso', 'PSO017G5166' => 'pso', 'PSO063G4558' => 'pso', 'PSO170G4458' => 'pso', 'PSO170G5005' => 'pso', 'PSO210G6156' => 'pso', 'PSO210G6635' => 'pso', 'PSO210G7397' => 'pso', 'PSO210G7700' => 'pso', 'PSO455G0035' => 'pso', 'PSO455G0180' => 'pso', 'PSO478G4515' => 'pso', 'PSO832G1305' => 'pso', 'PSO832G3489' => 'pso', 'QL02p075247' => 'qlo', 'QL03p051148' => 'qlo', 'QL05p010313' => 'qlo', 'QL06p034627' => 'qlo', 'QL10p001889' => 'qlo', 'QL10p010846' => 'qlo', 'RcHm_v2.0_Chr1g0350621' => 'rch', 'RcHm_v2.0_Chr1g0350641' => 'rch', 'RcHm_v2.0_Chr2g0092891' => 'rch', 'RcHm_v2.0_Chr2g0100251' => 'rch', 'RcHm_v2.0_Chr2g0158661' => 'rch', 'RcHm_v2.0_Chr2g0172741' => 'rch', 'RcHm_v2.0_Chr4g0429571' => 'rch', 'RcHm_v2.0_Chr5g0042471' => 'rch', 'RcHm_v2.0_Chr7g0189451' => 'rch', 'Rhsim08G0052000' => 'rsi', 'Rhsim08G0174400' => 'rsi', 'Rhsim08G0193200' => 'rsi', 'Rhsim10G0214800' => 'rsi', 'Rhsim10G0214900' => 'rsi', 'Rhsim10G0215000' => 'rsi', 'Rhsim12G0022900' => 'rsi', 'Rhsim12G0177500' => 'rsi', 'Rhsim12G0177700' => 'rsi', 'Sabra03G0122600' => 'sbr', 'Sabra05G0097400' => 'sbr', 'Sabra12G0064100' => 'sbr', 'Sabra15G0121300' => 'sbr', 'SalBow2G0642' => 'sbo', 'SalBow5G2667' => 'sbo', 'SalBow5G4873' => 'sbo', 'SalBow8G2395' => 'sbo', 'Sc03g0003290' => 'sci', 'Sc10g0010130' => 'sci', 'Sc22g0003650' => 'sci', 'Sed0001603' => 'sed', 'Sed0004259' => 'sed', 'Sed0006789' => 'sed', 'Sed0011838' => 'sed', 'Sed0012964' => 'sed', 'Sed0016383' => 'sed', 'Sed0019010' => 'sed', 'Sed0020188' => 'sed', 'SEGI_04702' => 'sgi', 'SEGI_17231' => 'sgi', 'SEGI_18877' => 'sgi', 'SEGI_25196' => 'sgi', 'SEGI_25515' => 'sgi', 'SEGI_28445' => 'sgi', 'SEGI_37452' => 'sgi', 'SGA_v2.0_scaffold188G40336' => 'sas', 'SGA_v2.0_scaffold228G43247' => 'sas', 'SGA_v2.0_scaffold280G46853' => 'sas', 'SGA_v2.0_scaffold34G13808' => 'sas', 'SGA_v2.0_scaffold40G15576' => 'sas', 'SGA_v2.0_scaffold611G53188' => 'sas', 'SGA_v2.0_scaffold78G25461' => 'sas', 'SGA_v2.0_scaffold90G27888' => 'sas', 'SHI08601' => 'shi', 'SHI08606' => 'shi', 'SHI17117' => 'shi', 'SHI17119' => 'shi', 'SMO118G0201' => 'smo', 'SMO169G0247' => 'smo', 'SMO176G0006' => 'smo', 'SMO176G0015' => 'smo', 'SMO202G0006' => 'smo', 'SMO240G0050' => 'smo', 'SMO286G0009' => 'smo', 'SMO338G0033' => 'smo', 'SMO356G0533' => 'smo', 'SMO364G0382' => 'smo', 'SMO367G0166' => 'smo', 'SMO367G1098' => 'smo', 'Solyc01g009920.3' => 'sly', 'Solyc01g099300.3' => 'sly', 'Solyc02g084700.3' => 'sly', 'Solyc03g097520.3' => 'sly', 'Solyc06g071580.3' => 'sly', 'Solyc10g081760.3' => 'sly', 'Sopen01g005480' => 'spe', 'Sopen01g042850' => 'spe', 'Sopen02g029370' => 'spe', 'Sopen03g028280' => 'spe', 'Sopen06g027870' => 'spe', 'Sopen10g032270' => 'spe', 'Sp5g18180' => 'spa', 'Sp6g12880' => 'spa', 'Sp6g30850' => 'spa', 'Sp7g22960' => 'spa', 'Sp7g34010' => 'spa', 'SpUn1326_0010' => 'spa', 'TAR371G0242' => 'tar', 'TAR622G0638' => 'tar', 'TAR628G1548' => 'tar', 'TAR629G1079' => 'tar', 'TAR629G3413' => 'tar', 'THA.LOC104804249' => 'tha', 'THA.LOC104808315' => 'tha', 'THA.LOC104809238' => 'tha', 'THA.LOC104825484' => 'tha', 'Thecc.01G025500' => 'tca', 'Thecc.03G015800' => 'tca', 'Thecc.03G018000' => 'tca', 'Thecc.03G134800' => 'tca', 'Thecc.04G014700' => 'tca', 'Thhalv10006991m.g' => 'esa', 'Thhalv10012707m.g' => 'esa', 'Thhalv10015739m.g' => 'esa', 'Thhalv10024553m.g' => 'esa', 'Thhalv10024673m.g' => 'esa', 'Thhalv10029187m.g' => 'esa', 'TPR.G12971' => 'tpr', 'TPR.G29396' => 'tpr', 'TPR.G33376' => 'tpr', 'TPR.G35508' => 'tpr', 'TPR.G35516' => 'tpr', 'TPR.G37317' => 'tpr', 'TPR.G37389' => 'tpr', 'TPR.G37523' => 'tpr', 'TPR.G559' => 'tpr', 'TWI14G0070' => 'twi', 'TWI14G0729' => 'twi', 'TWI18G0596' => 'twi', 'TWI39G0780' => 'twi', 'TWI39G0850' => 'twi', 'TWI73G1052' => 'twi', 'unitig_52.g17485' => 'ugi', 'unitig_61.g26355' => 'ugi', 'vmacro01040' => 'vma', 'vmacro16731' => 'vma', 'vmacro18270' => 'vma', 'vmacro19142' => 'vma', 'vmacro19407' => 'vma', 'vmacro19408' => 'vma', 'vmacro21899' => 'vma', 'vmacro21900' => 'vma', 'vmacro21901' => 'vma', 'VMungo0251G0490' => 'vmu', 'VMungo0251G1748' => 'vmu', 'VMungo1309G0421' => 'vmu', 'Zm00001eb086500' => 'zma', 'Zm00001eb150680' => 'zma', 'Zm00001eb162330' => 'zma', 'Zm00001eb203130' => 'zma', 'Zm00001eb369480' => 'zma', 'Zm00001eb382340' => 'zma', 'Zm00001eb416360' => 'zma' ), 'gf_id' => 'HOM05D000902', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000902' ), 'data_identifier' => 'HOM05D000902', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000902', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '663', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02470' => 'bna', 'A01p16260' => 'bna', 'A02p01680' => 'bna', 'A03p16600' => 'bna', 'A03p55660' => 'bna', 'A03p64160' => 'bna', 'A03p64170' => 'bna', 'A08p31900' => 'bna', 'A09p59530' => 'bna', 'A10p08230' => 'bna', 'A10p25090' => 'bna', 'Aa31LG3G7100' => 'aar', 'Aa31LG3G7110' => 'aar', 'Aa31LG6G13160' => 'aar', 'Aa31LG7G10770' => 'aar', 'Aa31LG7G3830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2723' => 'aag', 'Actinidia08045' => 'ach', 'Actinidia08888' => 'ach', 'Actinidia18333' => 'ach', 'Actinidia19334' => 'ach', 'Actinidia25552' => 'ach', 'Actinidia26089' => 'ach', 'Actinidia30615' => 'ach', 'Actinidia30616' => 'ach', 'Actinidia33083' => 'ach', 'Actinidia35762' => 'ach', 'Ah.02g110620' => 'amhyb', 'Ah.11g046390' => 'amhyb', 'AL1G31670' => 'aly', 'AL6G23730' => 'aly', 'AL7G14740' => 'aly', 'AL7G14750' => 'aly', 'AL7G14760' => 'aly', 'AL7G28220' => 'aly', 'AL8G24940' => 'aly', 'Aqoxy3G01665' => 'aox', 'Aqoxy3G02853' => 'aox', 'Aqoxy5G01513' => 'aox', 'Aqoxy5G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8SKA4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ75LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKDA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0LJZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7REX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZP4YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWX7I5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2QKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS0L9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPCD8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q161UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC7XCF' => 'arhy', 'AT1G19100' => 'ath', 'AT4G24970' => 'ath', 'AT4G36270' => 'ath', 'AT4G36280' => 'ath', 'AT4G36290' => 'ath', 'AT5G13130' => 'ath', 'AT5G50780' => 'ath', 'ATR0582G266' => 'atr', 'ATR0661G195' => 'atr', 'ATR1152G031' => 'atr', 'Atru.chr11.2382' => 'acertr', 'Atru.chr12.2337' => 'acertr', 'Atru.chr3.744' => 'acertr', 'Atru.chr6.1870' => 'acertr', 'Atru.chr9.2515' => 'acertr', 'AUR62004120' => 'cqu', 'AUR62005667' => 'cqu', 'AUR62007634' => 'cqu', 'AUR62008186' => 'cqu', 'AUR62008187' => 'cqu', 'AUR62008188' => 'cqu', 'AUR62027954' => 'cqu', 'AUR62028766' => 'cqu', 'AUR62028767' => 'cqu', 'AUR62028768' => 'cqu', 'AUR62028886' => 'cqu', 'AUR62029563' => 'cqu', 'AUR62038832' => 'cqu', 'BcaB01g04149' => 'bca', 'BcaB03g12940' => 'bca', 'BcaB03g13090' => 'bca', 'BcaB03g14466' => 'bca', 'BcaB05g24035' => 'bca', 'BcaC01g06050' => 'bca', 'BcaC04g19148' => 'bca', 'BcaC04g20761' => 'bca', 'BcaC06g32845' => 'bca', 'BcaC07g41274' => 'bca', 'BcaC09g50827' => 'bca', 'BcaNung00741' => 'bca', 'BcaNung00742' => 'bca', 'BcaNung01859' => 'bca', 'BcaNung03985' => 'bca', 'BcaNung03989' => 'bca', 'BcaNung05661' => 'bca', 'BolC1t00257H' => 'bol', 'BolC1t01956H' => 'bol', 'BolC2t06534H' => 'bol', 'BolC3t14334H' => 'bol', 'BolC5t30451H' => 'bol', 'BolC7t45880H' => 'bol', 'BolC7t46586H' => 'bol', 'BolC8t49301H' => 'bol', 'BolC8t51837H' => 'bol', 'BolC9t56822H' => 'bol', 'BolC9t59235H' => 'bol', 'BraA01t00234Z' => 'bra', 'BraA01t01563Z' => 'bra', 'BraA02t05147Z' => 'bra', 'BraA03t10947Z' => 'bra', 'BraA03t14633Z' => 'bra', 'BraA08t35112Z' => 'bra', 'BraA09t41330Z' => 'bra', 'BraA10t44570Z' => 'bra', 'C01p02670' => 'bna', 'C01p20260' => 'bna', 'C02p05890' => 'bna', 'C03p19530' => 'bna', 'C05p17470' => 'bna', 'C07p53900' => 'bna', 'C07p61630' => 'bna', 'C08p16800' => 'bna', 'C08p42810' => 'bna', 'C09p39480' => 'bna', 'C09p63980' => 'bna', 'CAN.G1001.7' => 'can', 'CAN.G1034.55' => 'can', 'CAN.G143.7' => 'can', 'CAN.G3340.1' => 'can', 'CAN.G358.19' => 'can', 'CAN.G373.2' => 'can', 'CAN.G674.16' => 'can', 'CAN.G674.17' => 'can', 'CAN.G674.18' => 'can', 'CAN.G732.2' => 'can', 'CAN.G732.3' => 'can', 'CAN.G993.39' => 'can', 'CANSAT01G2052' => 'cansat', 'CANSAT80G0070' => 'cansat', 'CANSAT80G0483' => 'cansat', 'CANSAT80G0625' => 'cansat', 'CARHR019690' => 'chi', 'CARHR080280' => 'chi', 'CARHR152750' => 'chi', 'CARHR152760' => 'chi', 'CARHR152770' => 'chi', 'CARHR200340' => 'chi', 'CARHR232370' => 'chi', 'CARHR244670' => 'chi', 'CARHR244680' => 'chi', 'CARHR257520' => 'chi', 'Carub.0001s1872' => 'cru', 'Carub.0006s1130' => 'cru', 'Carub.0007s0396' => 'cru', 'Carub.0007s0397' => 'cru', 'Carub.0007s1608' => 'cru', 'Carub.0008s1068' => 'cru', 'Carub.0008s1077' => 'cru', 'Ca_16158_v3' => 'car', 'Ca_17571_v3' => 'car', 'Ca_21936_v3' => 'car', 'Ca_22350_v3' => 'car', 'CBR_g22445' => 'cbr', 'CBR_g26290' => 'cbr', 'Cc04_g09610' => 'ccan', 'Cc04_g12280' => 'ccan', 'Cc07_g10230' => 'ccan', 'CDE02G0093' => 'cde', 'CDE02G0701' => 'cde', 'CDE04G1050' => 'cde', 'CDE05G1833' => 'cde', 'CDE05G3058' => 'cde', 'CDE05G3380' => 'cde', 'CDE06G0536' => 'cde', 'Cfa006923' => 'cfa', 'Cfa009402' => 'cfa', 'Cfa018751' => 'cfa', 'Cfa019164' => 'cfa', 'Cfa022935' => 'cfa', 'Ciclev10019081m.g' => 'ccl', 'Ciclev10025076m.g' => 'ccl', 'Ciclev10030712m.g' => 'ccl', 'Ciclev10033760m.g' => 'ccl', 'CiPaw.05G105600' => 'cil', 'CiPaw.08G136700' => 'cil', 'CiPaw.11G003900' => 'cil', 'CiPaw.11G023700' => 'cil', 'CiPaw.12G003700' => 'cil', 'ClCG06G017100' => 'cla', 'ClCG06G018110' => 'cla', 'ClCG07G008800' => 'cla', 'ClCG07G015330' => 'cla', 'COL.COLO4_13698' => 'col', 'COL.COLO4_16659' => 'col', 'COL.COLO4_21986' => 'col', 'COL.COLO4_24049' => 'col', 'COL.COLO4_29061' => 'col', 'COL.COLO4_29075' => 'col', 'COL.COLO4_30094' => 'col', 'Cpa.g.c33689' => 'cpa', 'Cpa.g.sc108.39' => 'cpa', 'Cpa.g.sc108.41' => 'cpa', 'Cpa.g.sc1163.1' => 'cpa', 'Cpa.g.sc4.155' => 'cpa', 'Cpa.g.sc6.194' => 'cpa', 'CsaV3_1G000340' => 'csa', 'CsaV3_1G001400' => 'csa', 'CsaV3_4G002220' => 'csa', 'CsaV3_4G005370' => 'csa', 'CSS0007487' => 'camsi', 'CSS0008066' => 'camsi', 'CSS0009120' => 'camsi', 'CSS0015512' => 'camsi', 'CSS0022409' => 'camsi', 'CSS0025358' => 'camsi', 'CSS0044547' => 'camsi', 'DCAR_013057' => 'dca', 'DCAR_015058' => 'dca', 'DCAR_016027' => 'dca', 'DCAR_017327' => 'dca', 'DCAR_020743' => 'dca', 'DCAR_026157' => 'dca', 'DCAR_032339' => 'dca', 'DCAR_032340' => 'dca', 'Dinv11200' => 'din', 'Dinv11201' => 'din', 'Dinv20631' => 'din', 'Dinv23182' => 'din', 'Dinv33466' => 'din', 'Dinv33583' => 'din', 'Dinv38565' => 'din', 'Duzib068G0200' => 'dzi', 'Duzib147G0132' => 'dzi', 'Duzib147G0635' => 'dzi', 'Duzib205G1670' => 'dzi', 'Duzib251G0606' => 'dzi', 'ECA232G3336' => 'eca', 'ECA232G3763' => 'eca', 'ECA232G4845' => 'eca', 'ECA234G1607' => 'eca', 'ECA246G0932' => 'eca', 'ECA247G0781' => 'eca', 'ECA247G1932' => 'eca', 'ECA247G2079' => 'eca', 'ECA247G3338' => 'eca', 'ECA247G4115' => 'eca', 'EL10Ac3g06552' => 'bvu', 'EL10Ac5g10721' => 'bvu', 'EL10Ac5g10722' => 'bvu', 'EL10Ac5g10723' => 'bvu', 'EL10Ac5g11361' => 'bvu', 'EL10Ac6g13553' => 'bvu', 'EL10As8g23872' => 'bvu', 'Eucgr.B00250' => 'egr', 'Eucgr.B00251' => 'egr', 'Eucgr.B03533' => 'egr', 'Eucgr.I02381' => 'egr', 'Eucgr.K02700' => 'egr', 'FAN02G0174' => 'fan', 'FAN02G3146' => 'fan', 'FAN04G1672' => 'fan', 'FAN04G2273' => 'fan', 'FAN05G2791' => 'fan', 'FAN05G4035' => 'fan', 'FAN07G0834' => 'fan', 'FAN08G1198' => 'fan', 'FAN09G4182' => 'fan', 'FAN12G0496' => 'fan', 'FAN13G1027' => 'fan', 'FAN13G2951' => 'fan', 'FAN14G0705' => 'fan', 'FAN14G0720' => 'fan', 'FAN17G0201' => 'fan', 'FAN17G2665' => 'fan', 'FAN18G1456' => 'fan', 'FAN18G1525' => 'fan', 'FAN18G3500' => 'fan', 'FAN28G2670' => 'fan', 'FvH4_1g12391' => 'fve', 'FvH4_4g23220' => 'fve', 'FvH4_5g08810' => 'fve', 'FvH4_5g28960' => 'fve', 'FvH4_6g42820' => 'fve', 'FvH4_6g51110' => 'fve', 'Glyma.02G051802' => 'gma', 'Glyma.04G185300' => 'gma', 'Glyma.05G202900' => 'gma', 'Glyma.08G010300' => 'gma', 'Glyma.16G131900' => 'gma', 'Glyma.17G087900' => 'gma', 'Gohir.A07G048600' => 'ghi', 'Gohir.A11G179000' => 'ghi', 'Gohir.A12G140900' => 'ghi', 'Gohir.A12G140950' => 'ghi', 'Gohir.A12G191700' => 'ghi', 'Gohir.A13G086300' => 'ghi', 'Gohir.D07G052900' => 'ghi', 'Gohir.D11G186600' => 'ghi', 'Gohir.D12G145575' => 'ghi', 'Gohir.D12G145650' => 'ghi', 'Gohir.D12G145725' => 'ghi', 'Gohir.D12G194050' => 'ghi', 'Gohir.D13G091800' => 'ghi', 'Gorai.001G055900' => 'gra', 'Gorai.007G198400' => 'gra', 'Gorai.008G157000' => 'gra', 'Gorai.008G157100' => 'gra', 'Gorai.008G208700' => 'gra', 'Gorai.010G138700' => 'gra', 'GSVIVG01000977001' => 'vvi', 'GSVIVG01007708001' => 'vvi', 'GSVIVG01008587001' => 'vvi', 'GSVIVG01018849001' => 'vvi', 'GSVIVG01032432001' => 'vvi', 'HanXRQChr02g0034131' => 'han', 'HanXRQChr02g0035981' => 'han', 'HanXRQChr02g0035991' => 'han', 'HanXRQChr05g0155611' => 'han', 'HanXRQChr05g0155621' => 'han', 'HanXRQChr08g0236501' => 'han', 'HanXRQChr09g0261321' => 'han', 'HanXRQChr09g0272081' => 'han', 'HanXRQChr10g0310741' => 'han', 'HanXRQChr11g0325591' => 'han', 'HanXRQChr12g0385691' => 'han', 'HanXRQChr13g0387801' => 'han', 'HanXRQChr15g0463011' => 'han', 'Haze_03826' => 'cav', 'Haze_03827' => 'cav', 'Haze_07183' => 'cav', 'Haze_07537' => 'cav', 'Haze_07539' => 'cav', 'Haze_12461' => 'cav', 'Haze_16115' => 'cav', 'Haze_16808' => 'cav', 'Haze_18531' => 'cav', 'Hma1.2p1_0046F.1_g026700' => 'hma', 'Hma1.2p1_0046F.1_g026710' => 'hma', 'Hma1.2p1_0168F.1_g074340' => 'hma', 'Hma1.2p1_0266F.1_g107030' => 'hma', 'Hma1.2p1_0266F.1_g107060' => 'hma', 'Hma1.2p1_0275F.1_g110510' => 'hma', 'Hma1.2p1_0592F.1_g185490' => 'hma', 'Hma1.2p1_0592F.1_g185500' => 'hma', 'Hma1.2p1_0592F.1_g185510' => 'hma', 'Hma1.2p1_0592F.1_g185520' => 'hma', 'Hma1.2p1_0592F.1_g185530' => 'hma', 'Hma1.2p1_0818F.1_g223450' => 'hma', 'HPP92_009708' => 'vpl', 'HPP92_009793' => 'vpl', 'HPP92_009796' => 'vpl', 'HPP92_009797' => 'vpl', 'HPP92_014940' => 'vpl', 'HPP92_014988' => 'vpl', 'Hund02463' => 'sun', 'Hund02760' => 'sun', 'Hund05071' => 'sun', 'Hund10108' => 'sun', 'Hund11204' => 'sun', 'Hund14016' => 'sun', 'Hund16464' => 'sun', 'Lalb_Chr09g0333391' => 'lal', 'Lalb_Chr11g0070461' => 'lal', 'Lalb_Chr12g0201671' => 'lal', 'Lalb_Chr13g0297161' => 'lal', 'Lj1g0002823' => 'lja', 'Lj3C1074T6' => 'lonja', 'Lj4A212T28' => 'lonja', 'Lj4g0005516' => 'lja', 'Lj4g0013705' => 'lja', 'Lj4g0027865' => 'lja', 'Lj5C92G16' => 'lonja', 'Lj5C92T12' => 'lonja', 'Lj7C596T3' => 'lonja', 'Lj9A446G59' => 'lonja', 'Lj9A482G21' => 'lonja', 'Lsat_1_v5_gn_1_28261' => 'lsa', 'Lsat_1_v5_gn_1_28281' => 'lsa', 'Lsat_1_v5_gn_1_32721' => 'lsa', 'Lsat_1_v5_gn_4_151760' => 'lsa', 'Lsat_1_v5_gn_4_2120' => 'lsa', 'Lsat_1_v5_gn_4_75761' => 'lsa', 'Lsat_1_v5_gn_5_10920' => 'lsa', 'Manes.02G099900' => 'mes', 'Manes.11G096200' => 'mes', 'Manes.12G007200' => 'mes', 'Manes.14G048300' => 'mes', 'Manes.17G114700' => 'mes', 'Mapoly0002s0070' => 'mpo', 'Mapoly0029s0099' => 'mpo', 'MBI07_g24742_MAGBIO' => 'mbi', 'MBI10_g27988_MAGBIO' => 'mbi', 'MBI11_g13057_MAGBIO' => 'mbi', 'MD02G1137200' => 'mdo', 'MD06G1137200' => 'mdo', 'MD07G1122300' => 'mdo', 'MD09G1078200' => 'mdo', 'MD13G1123700' => 'mdo', 'MD14G1151900' => 'mdo', 'MD17G1030900' => 'mdo', 'MD17G1068200' => 'mdo', 'MD17G1068600' => 'mdo', 'Medtr3g077540' => 'mtr', 'Medtr4g105530' => 'mtr', 'Medtr8g076580' => 'mtr', 'Medtr8g076590' => 'mtr', 'Medtr8g096410' => 'mtr', 'MELO3C016411.2' => 'cme', 'MELO3C017780.2' => 'cme', 'MELO3C022560.2' => 'cme', 'MELO3C026187.2' => 'cme', 'MELO3C026286.2' => 'cme', 'MELO3C032854.2' => 'cme', 'Migut.H02495' => 'egut', 'Migut.I00561' => 'egut', 'Migut.K01015' => 'egut', 'Migut.K01016' => 'egut', 'Migut.L00743' => 'egut', 'Migut.L00744' => 'egut', 'Migut.L00746' => 'egut', 'Migut.L00798' => 'egut', 'Migut.L00799' => 'egut', 'Migut.N02096' => 'egut', 'MSTRG.11259' => 'ama', 'MSTRG.23142' => 'ama', 'MSTRG.2499' => 'ama', 'Nitab4.5_0000003g0730' => 'nta', 'Nitab4.5_0000137g0020' => 'nta', 'Nitab4.5_0000721g0210' => 'nta', 'Nitab4.5_0000723g0050' => 'nta', 'Nitab4.5_0000913g0070' => 'nta', 'Nitab4.5_0001332g0040' => 'nta', 'Nitab4.5_0001771g0050' => 'nta', 'Nitab4.5_0001918g0050' => 'nta', 'Nitab4.5_0002686g0030' => 'nta', 'Nitab4.5_0003156g0020' => 'nta', 'Nitab4.5_0003383g0040' => 'nta', 'Nitab4.5_0003918g0010' => 'nta', 'Nitab4.5_0006760g0010' => 'nta', 'Nn1g05981' => 'nnu', 'Nn1g06288' => 'nnu', 'Nn3g16371' => 'nnu', 'Nn3g16786' => 'nnu', 'Nn4g22232' => 'nnu', 'Oeu005144.1' => 'oeu', 'Oeu005145.1' => 'oeu', 'Oeu011348.1' => 'oeu', 'Oeu016415.1' => 'oeu', 'Oeu023501.1' => 'oeu', 'Oeu044473.1' => 'oeu', 'Oeu048892.2' => 'oeu', 'Os01g0549200' => 'osa', 'Os02g0469300' => 'osa', 'Os04g0311100' => 'osa', 'Os06g0474900' => 'osa', 'Os10g0181700' => 'osa', 'Os11g0454800' => 'osa', 'Peaxi162Scf00037g00714' => 'pax', 'Peaxi162Scf00084g01217' => 'pax', 'Peaxi162Scf00257g00217' => 'pax', 'Peaxi162Scf00516g00215' => 'pax', 'Peaxi162Scf00689g00123' => 'pax', 'PGR044G2719' => 'pgr', 'PGR083G1360' => 'pgr', 'PGR102G2849' => 'pgr', 'PGR119G2534' => 'pgr', 'PGSC0003DMG400003538' => 'stu', 'PGSC0003DMG400028138' => 'stu', 'PGSC0003DMG400031732' => 'stu', 'PGSC0003DMG400038165' => 'stu', 'Phvul.002G284600' => 'pvu', 'Phvul.003G258200' => 'pvu', 'Phvul.009G176500' => 'pvu', 'Potri.003G167201' => 'ptr', 'Potri.005G118400' => 'ptr', 'Potri.012G089000' => 'ptr', 'Potri.012G102800' => 'ptr', 'Potri.015G079400' => 'ptr', 'Potri.015G100900' => 'ptr', 'Pp3c14_9810' => 'ppa', 'Pp3c15_10450' => 'ppa', 'Pp3c20_19150' => 'ppa', 'Pp3c23_12740' => 'ppa', 'Pp3c23_6310' => 'ppa', 'Pp3c24_3720' => 'ppa', 'Pp3c27_2580' => 'ppa', 'Pp3c9_8990' => 'ppa', 'PRCOL_00002854' => 'pco', 'Prupe.1G221200' => 'ppe', 'Prupe.3G289000' => 'ppe', 'Prupe.5G147000' => 'ppe', 'Prupe.6G157300' => 'ppe', 'Prupe.7G163400' => 'ppe', 'Psat0s2177g0040' => 'psa', 'Psat3g174760' => 'psa', 'Psat3g192160' => 'psa', 'Psat4g058520' => 'psa', 'Psat4g096840' => 'psa', 'Psat7g037320' => 'psa', 'PSO017G1274' => 'pso', 'PSO017G5166' => 'pso', 'PSO063G4558' => 'pso', 'PSO170G4458' => 'pso', 'PSO170G5005' => 'pso', 'PSO210G6156' => 'pso', 'PSO210G6635' => 'pso', 'PSO210G7397' => 'pso', 'PSO210G7700' => 'pso', 'PSO455G0035' => 'pso', 'PSO455G0180' => 'pso', 'PSO478G4515' => 'pso', 'PSO832G1305' => 'pso', 'PSO832G3489' => 'pso', 'QL02p075247' => 'qlo', 'QL03p051148' => 'qlo', 'QL05p010313' => 'qlo', 'QL06p034627' => 'qlo', 'QL10p001889' => 'qlo', 'QL10p010846' => 'qlo', 'RcHm_v2.0_Chr1g0350621' => 'rch', 'RcHm_v2.0_Chr1g0350641' => 'rch', 'RcHm_v2.0_Chr2g0092891' => 'rch', 'RcHm_v2.0_Chr2g0100251' => 'rch', 'RcHm_v2.0_Chr2g0158661' => 'rch', 'RcHm_v2.0_Chr2g0172741' => 'rch', 'RcHm_v2.0_Chr4g0429571' => 'rch', 'RcHm_v2.0_Chr5g0042471' => 'rch', 'RcHm_v2.0_Chr7g0189451' => 'rch', 'Rhsim08G0052000' => 'rsi', 'Rhsim08G0174400' => 'rsi', 'Rhsim08G0193200' => 'rsi', 'Rhsim10G0214800' => 'rsi', 'Rhsim10G0214900' => 'rsi', 'Rhsim10G0215000' => 'rsi', 'Rhsim12G0022900' => 'rsi', 'Rhsim12G0177500' => 'rsi', 'Rhsim12G0177700' => 'rsi', 'Sabra03G0122600' => 'sbr', 'Sabra05G0097400' => 'sbr', 'Sabra12G0064100' => 'sbr', 'Sabra15G0121300' => 'sbr', 'SalBow2G0642' => 'sbo', 'SalBow5G2667' => 'sbo', 'SalBow5G4873' => 'sbo', 'SalBow8G2395' => 'sbo', 'Sc03g0003290' => 'sci', 'Sc10g0010130' => 'sci', 'Sc22g0003650' => 'sci', 'Sed0001603' => 'sed', 'Sed0004259' => 'sed', 'Sed0006789' => 'sed', 'Sed0011838' => 'sed', 'Sed0012964' => 'sed', 'Sed0016383' => 'sed', 'Sed0019010' => 'sed', 'Sed0020188' => 'sed', 'SEGI_04702' => 'sgi', 'SEGI_17231' => 'sgi', 'SEGI_18877' => 'sgi', 'SEGI_25196' => 'sgi', 'SEGI_25515' => 'sgi', 'SEGI_28445' => 'sgi', 'SEGI_37452' => 'sgi', 'SGA_v2.0_scaffold188G40336' => 'sas', 'SGA_v2.0_scaffold228G43247' => 'sas', 'SGA_v2.0_scaffold280G46853' => 'sas', 'SGA_v2.0_scaffold34G13808' => 'sas', 'SGA_v2.0_scaffold40G15576' => 'sas', 'SGA_v2.0_scaffold611G53188' => 'sas', 'SGA_v2.0_scaffold78G25461' => 'sas', 'SGA_v2.0_scaffold90G27888' => 'sas', 'SHI08601' => 'shi', 'SHI08606' => 'shi', 'SHI17117' => 'shi', 'SHI17119' => 'shi', 'SMO118G0201' => 'smo', 'SMO169G0247' => 'smo', 'SMO176G0006' => 'smo', 'SMO176G0015' => 'smo', 'SMO202G0006' => 'smo', 'SMO240G0050' => 'smo', 'SMO286G0009' => 'smo', 'SMO338G0033' => 'smo', 'SMO356G0533' => 'smo', 'SMO364G0382' => 'smo', 'SMO367G0166' => 'smo', 'SMO367G1098' => 'smo', 'Solyc01g009920.3' => 'sly', 'Solyc01g099300.3' => 'sly', 'Solyc02g084700.3' => 'sly', 'Solyc03g097520.3' => 'sly', 'Solyc06g071580.3' => 'sly', 'Solyc10g081760.3' => 'sly', 'Sopen01g005480' => 'spe', 'Sopen01g042850' => 'spe', 'Sopen02g029370' => 'spe', 'Sopen03g028280' => 'spe', 'Sopen06g027870' => 'spe', 'Sopen10g032270' => 'spe', 'Sp5g18180' => 'spa', 'Sp6g12880' => 'spa', 'Sp6g30850' => 'spa', 'Sp7g22960' => 'spa', 'Sp7g34010' => 'spa', 'SpUn1326_0010' => 'spa', 'TAR371G0242' => 'tar', 'TAR622G0638' => 'tar', 'TAR628G1548' => 'tar', 'TAR629G1079' => 'tar', 'TAR629G3413' => 'tar', 'THA.LOC104804249' => 'tha', 'THA.LOC104808315' => 'tha', 'THA.LOC104809238' => 'tha', 'THA.LOC104825484' => 'tha', 'Thecc.01G025500' => 'tca', 'Thecc.03G015800' => 'tca', 'Thecc.03G018000' => 'tca', 'Thecc.03G134800' => 'tca', 'Thecc.04G014700' => 'tca', 'Thhalv10006991m.g' => 'esa', 'Thhalv10012707m.g' => 'esa', 'Thhalv10015739m.g' => 'esa', 'Thhalv10024553m.g' => 'esa', 'Thhalv10024673m.g' => 'esa', 'Thhalv10029187m.g' => 'esa', 'TPR.G12971' => 'tpr', 'TPR.G29396' => 'tpr', 'TPR.G33376' => 'tpr', 'TPR.G35508' => 'tpr', 'TPR.G35516' => 'tpr', 'TPR.G37317' => 'tpr', 'TPR.G37389' => 'tpr', 'TPR.G37523' => 'tpr', 'TPR.G559' => 'tpr', 'TWI14G0070' => 'twi', 'TWI14G0729' => 'twi', 'TWI18G0596' => 'twi', 'TWI39G0780' => 'twi', 'TWI39G0850' => 'twi', 'TWI73G1052' => 'twi', 'unitig_52.g17485' => 'ugi', 'unitig_61.g26355' => 'ugi', 'vmacro01040' => 'vma', 'vmacro16731' => 'vma', 'vmacro18270' => 'vma', 'vmacro19142' => 'vma', 'vmacro19407' => 'vma', 'vmacro19408' => 'vma', 'vmacro21899' => 'vma', 'vmacro21900' => 'vma', 'vmacro21901' => 'vma', 'VMungo0251G0490' => 'vmu', 'VMungo0251G1748' => 'vmu', 'VMungo1309G0421' => 'vmu', 'Zm00001eb086500' => 'zma', 'Zm00001eb150680' => 'zma', 'Zm00001eb162330' => 'zma', 'Zm00001eb203130' => 'zma', 'Zm00001eb369480' => 'zma', 'Zm00001eb382340' => 'zma', 'Zm00001eb416360' => 'zma' ) $gf_id = 'HOM05D000902' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000902' ) $data_identifier = 'HOM05D000902' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 13, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 10, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 6, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 9, 'hma' => (int) 12, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 4, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 6, 'ppa' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 6, 'rch' => (int) 9, 'rsi' => (int) 9, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 12, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 3, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416360' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000902', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '663', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02470' => 'bna', 'A01p16260' => 'bna', 'A02p01680' => 'bna', 'A03p16600' => 'bna', 'A03p55660' => 'bna', 'A03p64160' => 'bna', 'A03p64170' => 'bna', 'A08p31900' => 'bna', 'A09p59530' => 'bna', 'A10p08230' => 'bna', 'A10p25090' => 'bna', 'Aa31LG3G7100' => 'aar', 'Aa31LG3G7110' => 'aar', 'Aa31LG6G13160' => 'aar', 'Aa31LG7G10770' => 'aar', 'Aa31LG7G3830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2723' => 'aag', 'Actinidia08045' => 'ach', 'Actinidia08888' => 'ach', 'Actinidia18333' => 'ach', 'Actinidia19334' => 'ach', 'Actinidia25552' => 'ach', 'Actinidia26089' => 'ach', 'Actinidia30615' => 'ach', 'Actinidia30616' => 'ach', 'Actinidia33083' => 'ach', 'Actinidia35762' => 'ach', 'Ah.02g110620' => 'amhyb', 'Ah.11g046390' => 'amhyb', 'AL1G31670' => 'aly', 'AL6G23730' => 'aly', 'AL7G14740' => 'aly', 'AL7G14750' => 'aly', 'AL7G14760' => 'aly', 'AL7G28220' => 'aly', 'AL8G24940' => 'aly', 'Aqoxy3G01665' => 'aox', 'Aqoxy3G02853' => 'aox', 'Aqoxy5G01513' => 'aox', 'Aqoxy5G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8SKA4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ75LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKDA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0LJZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7REX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZP4YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWX7I5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2QKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS0L9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPCD8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q161UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC7XCF' => 'arhy', 'AT1G19100' => 'ath', 'AT4G24970' => 'ath', 'AT4G36270' => 'ath', 'AT4G36280' => 'ath', 'AT4G36290' => 'ath', 'AT5G13130' => 'ath', 'AT5G50780' => 'ath', 'ATR0582G266' => 'atr', 'ATR0661G195' => 'atr', 'ATR1152G031' => 'atr', 'Atru.chr11.2382' => 'acertr', 'Atru.chr12.2337' => 'acertr', 'Atru.chr3.744' => 'acertr', 'Atru.chr6.1870' => 'acertr', 'Atru.chr9.2515' => 'acertr', 'AUR62004120' => 'cqu', 'AUR62005667' => 'cqu', 'AUR62007634' => 'cqu', 'AUR62008186' => 'cqu', 'AUR62008187' => 'cqu', 'AUR62008188' => 'cqu', 'AUR62027954' => 'cqu', 'AUR62028766' => 'cqu', 'AUR62028767' => 'cqu', 'AUR62028768' => 'cqu', 'AUR62028886' => 'cqu', 'AUR62029563' => 'cqu', 'AUR62038832' => 'cqu', 'BcaB01g04149' => 'bca', 'BcaB03g12940' => 'bca', 'BcaB03g13090' => 'bca', 'BcaB03g14466' => 'bca', 'BcaB05g24035' => 'bca', 'BcaC01g06050' => 'bca', 'BcaC04g19148' => 'bca', 'BcaC04g20761' => 'bca', 'BcaC06g32845' => 'bca', 'BcaC07g41274' => 'bca', 'BcaC09g50827' => 'bca', 'BcaNung00741' => 'bca', 'BcaNung00742' => 'bca', 'BcaNung01859' => 'bca', 'BcaNung03985' => 'bca', 'BcaNung03989' => 'bca', 'BcaNung05661' => 'bca', 'BolC1t00257H' => 'bol', 'BolC1t01956H' => 'bol', 'BolC2t06534H' => 'bol', 'BolC3t14334H' => 'bol', 'BolC5t30451H' => 'bol', 'BolC7t45880H' => 'bol', 'BolC7t46586H' => 'bol', 'BolC8t49301H' => 'bol', 'BolC8t51837H' => 'bol', 'BolC9t56822H' => 'bol', 'BolC9t59235H' => 'bol', 'BraA01t00234Z' => 'bra', 'BraA01t01563Z' => 'bra', 'BraA02t05147Z' => 'bra', 'BraA03t10947Z' => 'bra', 'BraA03t14633Z' => 'bra', 'BraA08t35112Z' => 'bra', 'BraA09t41330Z' => 'bra', 'BraA10t44570Z' => 'bra', 'C01p02670' => 'bna', 'C01p20260' => 'bna', 'C02p05890' => 'bna', 'C03p19530' => 'bna', 'C05p17470' => 'bna', 'C07p53900' => 'bna', 'C07p61630' => 'bna', 'C08p16800' => 'bna', 'C08p42810' => 'bna', 'C09p39480' => 'bna', 'C09p63980' => 'bna', 'CAN.G1001.7' => 'can', 'CAN.G1034.55' => 'can', 'CAN.G143.7' => 'can', 'CAN.G3340.1' => 'can', 'CAN.G358.19' => 'can', 'CAN.G373.2' => 'can', 'CAN.G674.16' => 'can', 'CAN.G674.17' => 'can', 'CAN.G674.18' => 'can', 'CAN.G732.2' => 'can', 'CAN.G732.3' => 'can', 'CAN.G993.39' => 'can', 'CANSAT01G2052' => 'cansat', 'CANSAT80G0070' => 'cansat', 'CANSAT80G0483' => 'cansat', 'CANSAT80G0625' => 'cansat', 'CARHR019690' => 'chi', 'CARHR080280' => 'chi', 'CARHR152750' => 'chi', 'CARHR152760' => 'chi', 'CARHR152770' => 'chi', 'CARHR200340' => 'chi', 'CARHR232370' => 'chi', 'CARHR244670' => 'chi', 'CARHR244680' => 'chi', 'CARHR257520' => 'chi', 'Carub.0001s1872' => 'cru', 'Carub.0006s1130' => 'cru', 'Carub.0007s0396' => 'cru', 'Carub.0007s0397' => 'cru', 'Carub.0007s1608' => 'cru', 'Carub.0008s1068' => 'cru', 'Carub.0008s1077' => 'cru', 'Ca_16158_v3' => 'car', 'Ca_17571_v3' => 'car', 'Ca_21936_v3' => 'car', 'Ca_22350_v3' => 'car', 'CBR_g22445' => 'cbr', 'CBR_g26290' => 'cbr', 'Cc04_g09610' => 'ccan', 'Cc04_g12280' => 'ccan', 'Cc07_g10230' => 'ccan', 'CDE02G0093' => 'cde', 'CDE02G0701' => 'cde', 'CDE04G1050' => 'cde', 'CDE05G1833' => 'cde', 'CDE05G3058' => 'cde', 'CDE05G3380' => 'cde', 'CDE06G0536' => 'cde', 'Cfa006923' => 'cfa', 'Cfa009402' => 'cfa', 'Cfa018751' => 'cfa', 'Cfa019164' => 'cfa', 'Cfa022935' => 'cfa', 'Ciclev10019081m.g' => 'ccl', 'Ciclev10025076m.g' => 'ccl', 'Ciclev10030712m.g' => 'ccl', 'Ciclev10033760m.g' => 'ccl', 'CiPaw.05G105600' => 'cil', 'CiPaw.08G136700' => 'cil', 'CiPaw.11G003900' => 'cil', 'CiPaw.11G023700' => 'cil', 'CiPaw.12G003700' => 'cil', 'ClCG06G017100' => 'cla', 'ClCG06G018110' => 'cla', 'ClCG07G008800' => 'cla', 'ClCG07G015330' => 'cla', 'COL.COLO4_13698' => 'col', 'COL.COLO4_16659' => 'col', 'COL.COLO4_21986' => 'col', 'COL.COLO4_24049' => 'col', 'COL.COLO4_29061' => 'col', 'COL.COLO4_29075' => 'col', 'COL.COLO4_30094' => 'col', 'Cpa.g.c33689' => 'cpa', 'Cpa.g.sc108.39' => 'cpa', 'Cpa.g.sc108.41' => 'cpa', 'Cpa.g.sc1163.1' => 'cpa', 'Cpa.g.sc4.155' => 'cpa', 'Cpa.g.sc6.194' => 'cpa', 'CsaV3_1G000340' => 'csa', 'CsaV3_1G001400' => 'csa', 'CsaV3_4G002220' => 'csa', 'CsaV3_4G005370' => 'csa', 'CSS0007487' => 'camsi', 'CSS0008066' => 'camsi', 'CSS0009120' => 'camsi', 'CSS0015512' => 'camsi', 'CSS0022409' => 'camsi', 'CSS0025358' => 'camsi', 'CSS0044547' => 'camsi', 'DCAR_013057' => 'dca', 'DCAR_015058' => 'dca', 'DCAR_016027' => 'dca', 'DCAR_017327' => 'dca', 'DCAR_020743' => 'dca', 'DCAR_026157' => 'dca', 'DCAR_032339' => 'dca', 'DCAR_032340' => 'dca', 'Dinv11200' => 'din', 'Dinv11201' => 'din', 'Dinv20631' => 'din', 'Dinv23182' => 'din', 'Dinv33466' => 'din', 'Dinv33583' => 'din', 'Dinv38565' => 'din', 'Duzib068G0200' => 'dzi', 'Duzib147G0132' => 'dzi', 'Duzib147G0635' => 'dzi', 'Duzib205G1670' => 'dzi', 'Duzib251G0606' => 'dzi', 'ECA232G3336' => 'eca', 'ECA232G3763' => 'eca', 'ECA232G4845' => 'eca', 'ECA234G1607' => 'eca', 'ECA246G0932' => 'eca', 'ECA247G0781' => 'eca', 'ECA247G1932' => 'eca', 'ECA247G2079' => 'eca', 'ECA247G3338' => 'eca', 'ECA247G4115' => 'eca', 'EL10Ac3g06552' => 'bvu', 'EL10Ac5g10721' => 'bvu', 'EL10Ac5g10722' => 'bvu', 'EL10Ac5g10723' => 'bvu', 'EL10Ac5g11361' => 'bvu', 'EL10Ac6g13553' => 'bvu', 'EL10As8g23872' => 'bvu', 'Eucgr.B00250' => 'egr', 'Eucgr.B00251' => 'egr', 'Eucgr.B03533' => 'egr', 'Eucgr.I02381' => 'egr', 'Eucgr.K02700' => 'egr', 'FAN02G0174' => 'fan', 'FAN02G3146' => 'fan', 'FAN04G1672' => 'fan', 'FAN04G2273' => 'fan', 'FAN05G2791' => 'fan', 'FAN05G4035' => 'fan', 'FAN07G0834' => 'fan', 'FAN08G1198' => 'fan', 'FAN09G4182' => 'fan', 'FAN12G0496' => 'fan', 'FAN13G1027' => 'fan', 'FAN13G2951' => 'fan', 'FAN14G0705' => 'fan', 'FAN14G0720' => 'fan', 'FAN17G0201' => 'fan', 'FAN17G2665' => 'fan', 'FAN18G1456' => 'fan', 'FAN18G1525' => 'fan', 'FAN18G3500' => 'fan', 'FAN28G2670' => 'fan', 'FvH4_1g12391' => 'fve', 'FvH4_4g23220' => 'fve', 'FvH4_5g08810' => 'fve', 'FvH4_5g28960' => 'fve', 'FvH4_6g42820' => 'fve', 'FvH4_6g51110' => 'fve', 'Glyma.02G051802' => 'gma', 'Glyma.04G185300' => 'gma', 'Glyma.05G202900' => 'gma', 'Glyma.08G010300' => 'gma', 'Glyma.16G131900' => 'gma', 'Glyma.17G087900' => 'gma', 'Gohir.A07G048600' => 'ghi', 'Gohir.A11G179000' => 'ghi', 'Gohir.A12G140900' => 'ghi', 'Gohir.A12G140950' => 'ghi', 'Gohir.A12G191700' => 'ghi', 'Gohir.A13G086300' => 'ghi', 'Gohir.D07G052900' => 'ghi', 'Gohir.D11G186600' => 'ghi', 'Gohir.D12G145575' => 'ghi', 'Gohir.D12G145650' => 'ghi', 'Gohir.D12G145725' => 'ghi', 'Gohir.D12G194050' => 'ghi', 'Gohir.D13G091800' => 'ghi', 'Gorai.001G055900' => 'gra', 'Gorai.007G198400' => 'gra', 'Gorai.008G157000' => 'gra', 'Gorai.008G157100' => 'gra', 'Gorai.008G208700' => 'gra', 'Gorai.010G138700' => 'gra', 'GSVIVG01000977001' => 'vvi', 'GSVIVG01007708001' => 'vvi', 'GSVIVG01008587001' => 'vvi', 'GSVIVG01018849001' => 'vvi', 'GSVIVG01032432001' => 'vvi', 'HanXRQChr02g0034131' => 'han', 'HanXRQChr02g0035981' => 'han', 'HanXRQChr02g0035991' => 'han', 'HanXRQChr05g0155611' => 'han', 'HanXRQChr05g0155621' => 'han', 'HanXRQChr08g0236501' => 'han', 'HanXRQChr09g0261321' => 'han', 'HanXRQChr09g0272081' => 'han', 'HanXRQChr10g0310741' => 'han', 'HanXRQChr11g0325591' => 'han', 'HanXRQChr12g0385691' => 'han', 'HanXRQChr13g0387801' => 'han', 'HanXRQChr15g0463011' => 'han', 'Haze_03826' => 'cav', 'Haze_03827' => 'cav', 'Haze_07183' => 'cav', 'Haze_07537' => 'cav', 'Haze_07539' => 'cav', 'Haze_12461' => 'cav', 'Haze_16115' => 'cav', 'Haze_16808' => 'cav', 'Haze_18531' => 'cav', 'Hma1.2p1_0046F.1_g026700' => 'hma', 'Hma1.2p1_0046F.1_g026710' => 'hma', 'Hma1.2p1_0168F.1_g074340' => 'hma', 'Hma1.2p1_0266F.1_g107030' => 'hma', 'Hma1.2p1_0266F.1_g107060' => 'hma', 'Hma1.2p1_0275F.1_g110510' => 'hma', 'Hma1.2p1_0592F.1_g185490' => 'hma', 'Hma1.2p1_0592F.1_g185500' => 'hma', 'Hma1.2p1_0592F.1_g185510' => 'hma', 'Hma1.2p1_0592F.1_g185520' => 'hma', 'Hma1.2p1_0592F.1_g185530' => 'hma', 'Hma1.2p1_0818F.1_g223450' => 'hma', 'HPP92_009708' => 'vpl', 'HPP92_009793' => 'vpl', 'HPP92_009796' => 'vpl', 'HPP92_009797' => 'vpl', 'HPP92_014940' => 'vpl', 'HPP92_014988' => 'vpl', 'Hund02463' => 'sun', 'Hund02760' => 'sun', 'Hund05071' => 'sun', 'Hund10108' => 'sun', 'Hund11204' => 'sun', 'Hund14016' => 'sun', 'Hund16464' => 'sun', 'Lalb_Chr09g0333391' => 'lal', 'Lalb_Chr11g0070461' => 'lal', 'Lalb_Chr12g0201671' => 'lal', 'Lalb_Chr13g0297161' => 'lal', 'Lj1g0002823' => 'lja', 'Lj3C1074T6' => 'lonja', 'Lj4A212T28' => 'lonja', 'Lj4g0005516' => 'lja', 'Lj4g0013705' => 'lja', 'Lj4g0027865' => 'lja', 'Lj5C92G16' => 'lonja', 'Lj5C92T12' => 'lonja', 'Lj7C596T3' => 'lonja', 'Lj9A446G59' => 'lonja', 'Lj9A482G21' => 'lonja', 'Lsat_1_v5_gn_1_28261' => 'lsa', 'Lsat_1_v5_gn_1_28281' => 'lsa', 'Lsat_1_v5_gn_1_32721' => 'lsa', 'Lsat_1_v5_gn_4_151760' => 'lsa', 'Lsat_1_v5_gn_4_2120' => 'lsa', 'Lsat_1_v5_gn_4_75761' => 'lsa', 'Lsat_1_v5_gn_5_10920' => 'lsa', 'Manes.02G099900' => 'mes', 'Manes.11G096200' => 'mes', 'Manes.12G007200' => 'mes', 'Manes.14G048300' => 'mes', 'Manes.17G114700' => 'mes', 'Mapoly0002s0070' => 'mpo', 'Mapoly0029s0099' => 'mpo', 'MBI07_g24742_MAGBIO' => 'mbi', 'MBI10_g27988_MAGBIO' => 'mbi', 'MBI11_g13057_MAGBIO' => 'mbi', 'MD02G1137200' => 'mdo', 'MD06G1137200' => 'mdo', 'MD07G1122300' => 'mdo', 'MD09G1078200' => 'mdo', 'MD13G1123700' => 'mdo', 'MD14G1151900' => 'mdo', 'MD17G1030900' => 'mdo', 'MD17G1068200' => 'mdo', 'MD17G1068600' => 'mdo', 'Medtr3g077540' => 'mtr', 'Medtr4g105530' => 'mtr', 'Medtr8g076580' => 'mtr', 'Medtr8g076590' => 'mtr', 'Medtr8g096410' => 'mtr', 'MELO3C016411.2' => 'cme', 'MELO3C017780.2' => 'cme', 'MELO3C022560.2' => 'cme', 'MELO3C026187.2' => 'cme', 'MELO3C026286.2' => 'cme', 'MELO3C032854.2' => 'cme', 'Migut.H02495' => 'egut', 'Migut.I00561' => 'egut', 'Migut.K01015' => 'egut', 'Migut.K01016' => 'egut', 'Migut.L00743' => 'egut', 'Migut.L00744' => 'egut', 'Migut.L00746' => 'egut', 'Migut.L00798' => 'egut', 'Migut.L00799' => 'egut', 'Migut.N02096' => 'egut', 'MSTRG.11259' => 'ama', 'MSTRG.23142' => 'ama', 'MSTRG.2499' => 'ama', 'Nitab4.5_0000003g0730' => 'nta', 'Nitab4.5_0000137g0020' => 'nta', 'Nitab4.5_0000721g0210' => 'nta', 'Nitab4.5_0000723g0050' => 'nta', 'Nitab4.5_0000913g0070' => 'nta', 'Nitab4.5_0001332g0040' => 'nta', 'Nitab4.5_0001771g0050' => 'nta', 'Nitab4.5_0001918g0050' => 'nta', 'Nitab4.5_0002686g0030' => 'nta', 'Nitab4.5_0003156g0020' => 'nta', 'Nitab4.5_0003383g0040' => 'nta', 'Nitab4.5_0003918g0010' => 'nta', 'Nitab4.5_0006760g0010' => 'nta', 'Nn1g05981' => 'nnu', 'Nn1g06288' => 'nnu', 'Nn3g16371' => 'nnu', 'Nn3g16786' => 'nnu', 'Nn4g22232' => 'nnu', 'Oeu005144.1' => 'oeu', 'Oeu005145.1' => 'oeu', 'Oeu011348.1' => 'oeu', 'Oeu016415.1' => 'oeu', 'Oeu023501.1' => 'oeu', 'Oeu044473.1' => 'oeu', 'Oeu048892.2' => 'oeu', 'Os01g0549200' => 'osa', 'Os02g0469300' => 'osa', 'Os04g0311100' => 'osa', 'Os06g0474900' => 'osa', 'Os10g0181700' => 'osa', 'Os11g0454800' => 'osa', 'Peaxi162Scf00037g00714' => 'pax', 'Peaxi162Scf00084g01217' => 'pax', 'Peaxi162Scf00257g00217' => 'pax', 'Peaxi162Scf00516g00215' => 'pax', 'Peaxi162Scf00689g00123' => 'pax', 'PGR044G2719' => 'pgr', 'PGR083G1360' => 'pgr', 'PGR102G2849' => 'pgr', 'PGR119G2534' => 'pgr', 'PGSC0003DMG400003538' => 'stu', 'PGSC0003DMG400028138' => 'stu', 'PGSC0003DMG400031732' => 'stu', 'PGSC0003DMG400038165' => 'stu', 'Phvul.002G284600' => 'pvu', 'Phvul.003G258200' => 'pvu', 'Phvul.009G176500' => 'pvu', 'Potri.003G167201' => 'ptr', 'Potri.005G118400' => 'ptr', 'Potri.012G089000' => 'ptr', 'Potri.012G102800' => 'ptr', 'Potri.015G079400' => 'ptr', 'Potri.015G100900' => 'ptr', 'Pp3c14_9810' => 'ppa', 'Pp3c15_10450' => 'ppa', 'Pp3c20_19150' => 'ppa', 'Pp3c23_12740' => 'ppa', 'Pp3c23_6310' => 'ppa', 'Pp3c24_3720' => 'ppa', 'Pp3c27_2580' => 'ppa', 'Pp3c9_8990' => 'ppa', 'PRCOL_00002854' => 'pco', 'Prupe.1G221200' => 'ppe', 'Prupe.3G289000' => 'ppe', 'Prupe.5G147000' => 'ppe', 'Prupe.6G157300' => 'ppe', 'Prupe.7G163400' => 'ppe', 'Psat0s2177g0040' => 'psa', 'Psat3g174760' => 'psa', 'Psat3g192160' => 'psa', 'Psat4g058520' => 'psa', 'Psat4g096840' => 'psa', 'Psat7g037320' => 'psa', 'PSO017G1274' => 'pso', 'PSO017G5166' => 'pso', 'PSO063G4558' => 'pso', 'PSO170G4458' => 'pso', 'PSO170G5005' => 'pso', 'PSO210G6156' => 'pso', 'PSO210G6635' => 'pso', 'PSO210G7397' => 'pso', 'PSO210G7700' => 'pso', 'PSO455G0035' => 'pso', 'PSO455G0180' => 'pso', 'PSO478G4515' => 'pso', 'PSO832G1305' => 'pso', 'PSO832G3489' => 'pso', 'QL02p075247' => 'qlo', 'QL03p051148' => 'qlo', 'QL05p010313' => 'qlo', 'QL06p034627' => 'qlo', 'QL10p001889' => 'qlo', 'QL10p010846' => 'qlo', 'RcHm_v2.0_Chr1g0350621' => 'rch', 'RcHm_v2.0_Chr1g0350641' => 'rch', 'RcHm_v2.0_Chr2g0092891' => 'rch', 'RcHm_v2.0_Chr2g0100251' => 'rch', 'RcHm_v2.0_Chr2g0158661' => 'rch', 'RcHm_v2.0_Chr2g0172741' => 'rch', 'RcHm_v2.0_Chr4g0429571' => 'rch', 'RcHm_v2.0_Chr5g0042471' => 'rch', 'RcHm_v2.0_Chr7g0189451' => 'rch', 'Rhsim08G0052000' => 'rsi', 'Rhsim08G0174400' => 'rsi', 'Rhsim08G0193200' => 'rsi', 'Rhsim10G0214800' => 'rsi', 'Rhsim10G0214900' => 'rsi', 'Rhsim10G0215000' => 'rsi', 'Rhsim12G0022900' => 'rsi', 'Rhsim12G0177500' => 'rsi', 'Rhsim12G0177700' => 'rsi', 'Sabra03G0122600' => 'sbr', 'Sabra05G0097400' => 'sbr', 'Sabra12G0064100' => 'sbr', 'Sabra15G0121300' => 'sbr', 'SalBow2G0642' => 'sbo', 'SalBow5G2667' => 'sbo', 'SalBow5G4873' => 'sbo', 'SalBow8G2395' => 'sbo', 'Sc03g0003290' => 'sci', 'Sc10g0010130' => 'sci', 'Sc22g0003650' => 'sci', 'Sed0001603' => 'sed', 'Sed0004259' => 'sed', 'Sed0006789' => 'sed', 'Sed0011838' => 'sed', 'Sed0012964' => 'sed', 'Sed0016383' => 'sed', 'Sed0019010' => 'sed', 'Sed0020188' => 'sed', 'SEGI_04702' => 'sgi', 'SEGI_17231' => 'sgi', 'SEGI_18877' => 'sgi', 'SEGI_25196' => 'sgi', 'SEGI_25515' => 'sgi', 'SEGI_28445' => 'sgi', 'SEGI_37452' => 'sgi', 'SGA_v2.0_scaffold188G40336' => 'sas', 'SGA_v2.0_scaffold228G43247' => 'sas', 'SGA_v2.0_scaffold280G46853' => 'sas', 'SGA_v2.0_scaffold34G13808' => 'sas', 'SGA_v2.0_scaffold40G15576' => 'sas', 'SGA_v2.0_scaffold611G53188' => 'sas', 'SGA_v2.0_scaffold78G25461' => 'sas', 'SGA_v2.0_scaffold90G27888' => 'sas', 'SHI08601' => 'shi', 'SHI08606' => 'shi', 'SHI17117' => 'shi', 'SHI17119' => 'shi', 'SMO118G0201' => 'smo', 'SMO169G0247' => 'smo', 'SMO176G0006' => 'smo', 'SMO176G0015' => 'smo', 'SMO202G0006' => 'smo', 'SMO240G0050' => 'smo', 'SMO286G0009' => 'smo', 'SMO338G0033' => 'smo', 'SMO356G0533' => 'smo', 'SMO364G0382' => 'smo', 'SMO367G0166' => 'smo', 'SMO367G1098' => 'smo', 'Solyc01g009920.3' => 'sly', 'Solyc01g099300.3' => 'sly', 'Solyc02g084700.3' => 'sly', 'Solyc03g097520.3' => 'sly', 'Solyc06g071580.3' => 'sly', 'Solyc10g081760.3' => 'sly', 'Sopen01g005480' => 'spe', 'Sopen01g042850' => 'spe', 'Sopen02g029370' => 'spe', 'Sopen03g028280' => 'spe', 'Sopen06g027870' => 'spe', 'Sopen10g032270' => 'spe', 'Sp5g18180' => 'spa', 'Sp6g12880' => 'spa', 'Sp6g30850' => 'spa', 'Sp7g22960' => 'spa', 'Sp7g34010' => 'spa', 'SpUn1326_0010' => 'spa', 'TAR371G0242' => 'tar', 'TAR622G0638' => 'tar', 'TAR628G1548' => 'tar', 'TAR629G1079' => 'tar', 'TAR629G3413' => 'tar', 'THA.LOC104804249' => 'tha', 'THA.LOC104808315' => 'tha', 'THA.LOC104809238' => 'tha', 'THA.LOC104825484' => 'tha', 'Thecc.01G025500' => 'tca', 'Thecc.03G015800' => 'tca', 'Thecc.03G018000' => 'tca', 'Thecc.03G134800' => 'tca', 'Thecc.04G014700' => 'tca', 'Thhalv10006991m.g' => 'esa', 'Thhalv10012707m.g' => 'esa', 'Thhalv10015739m.g' => 'esa', 'Thhalv10024553m.g' => 'esa', 'Thhalv10024673m.g' => 'esa', 'Thhalv10029187m.g' => 'esa', 'TPR.G12971' => 'tpr', 'TPR.G29396' => 'tpr', 'TPR.G33376' => 'tpr', 'TPR.G35508' => 'tpr', 'TPR.G35516' => 'tpr', 'TPR.G37317' => 'tpr', 'TPR.G37389' => 'tpr', 'TPR.G37523' => 'tpr', 'TPR.G559' => 'tpr', 'TWI14G0070' => 'twi', 'TWI14G0729' => 'twi', 'TWI18G0596' => 'twi', 'TWI39G0780' => 'twi', 'TWI39G0850' => 'twi', 'TWI73G1052' => 'twi', 'unitig_52.g17485' => 'ugi', 'unitig_61.g26355' => 'ugi', 'vmacro01040' => 'vma', 'vmacro16731' => 'vma', 'vmacro18270' => 'vma', 'vmacro19142' => 'vma', 'vmacro19407' => 'vma', 'vmacro19408' => 'vma', 'vmacro21899' => 'vma', 'vmacro21900' => 'vma', 'vmacro21901' => 'vma', 'VMungo0251G0490' => 'vmu', 'VMungo0251G1748' => 'vmu', 'VMungo1309G0421' => 'vmu', 'Zm00001eb086500' => 'zma', 'Zm00001eb150680' => 'zma', 'Zm00001eb162330' => 'zma', 'Zm00001eb203130' => 'zma', 'Zm00001eb369480' => 'zma', 'Zm00001eb382340' => 'zma', 'Zm00001eb416360' => 'zma' ), 'gf_id' => 'HOM05D000902', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000902' ), 'data_identifier' => 'HOM05D000902', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000902', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '663', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02470' => 'bna', 'A01p16260' => 'bna', 'A02p01680' => 'bna', 'A03p16600' => 'bna', 'A03p55660' => 'bna', 'A03p64160' => 'bna', 'A03p64170' => 'bna', 'A08p31900' => 'bna', 'A09p59530' => 'bna', 'A10p08230' => 'bna', 'A10p25090' => 'bna', 'Aa31LG3G7100' => 'aar', 'Aa31LG3G7110' => 'aar', 'Aa31LG6G13160' => 'aar', 'Aa31LG7G10770' => 'aar', 'Aa31LG7G3830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2723' => 'aag', 'Actinidia08045' => 'ach', 'Actinidia08888' => 'ach', 'Actinidia18333' => 'ach', 'Actinidia19334' => 'ach', 'Actinidia25552' => 'ach', 'Actinidia26089' => 'ach', 'Actinidia30615' => 'ach', 'Actinidia30616' => 'ach', 'Actinidia33083' => 'ach', 'Actinidia35762' => 'ach', 'Ah.02g110620' => 'amhyb', 'Ah.11g046390' => 'amhyb', 'AL1G31670' => 'aly', 'AL6G23730' => 'aly', 'AL7G14740' => 'aly', 'AL7G14750' => 'aly', 'AL7G14760' => 'aly', 'AL7G28220' => 'aly', 'AL8G24940' => 'aly', 'Aqoxy3G01665' => 'aox', 'Aqoxy3G02853' => 'aox', 'Aqoxy5G01513' => 'aox', 'Aqoxy5G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8SKA4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ75LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKDA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0LJZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7REX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZP4YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWX7I5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2QKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS0L9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPCD8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q161UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC7XCF' => 'arhy', 'AT1G19100' => 'ath', 'AT4G24970' => 'ath', 'AT4G36270' => 'ath', 'AT4G36280' => 'ath', 'AT4G36290' => 'ath', 'AT5G13130' => 'ath', 'AT5G50780' => 'ath', 'ATR0582G266' => 'atr', 'ATR0661G195' => 'atr', 'ATR1152G031' => 'atr', 'Atru.chr11.2382' => 'acertr', 'Atru.chr12.2337' => 'acertr', 'Atru.chr3.744' => 'acertr', 'Atru.chr6.1870' => 'acertr', 'Atru.chr9.2515' => 'acertr', 'AUR62004120' => 'cqu', 'AUR62005667' => 'cqu', 'AUR62007634' => 'cqu', 'AUR62008186' => 'cqu', 'AUR62008187' => 'cqu', 'AUR62008188' => 'cqu', 'AUR62027954' => 'cqu', 'AUR62028766' => 'cqu', 'AUR62028767' => 'cqu', 'AUR62028768' => 'cqu', 'AUR62028886' => 'cqu', 'AUR62029563' => 'cqu', 'AUR62038832' => 'cqu', 'BcaB01g04149' => 'bca', 'BcaB03g12940' => 'bca', 'BcaB03g13090' => 'bca', 'BcaB03g14466' => 'bca', 'BcaB05g24035' => 'bca', 'BcaC01g06050' => 'bca', 'BcaC04g19148' => 'bca', 'BcaC04g20761' => 'bca', 'BcaC06g32845' => 'bca', 'BcaC07g41274' => 'bca', 'BcaC09g50827' => 'bca', 'BcaNung00741' => 'bca', 'BcaNung00742' => 'bca', 'BcaNung01859' => 'bca', 'BcaNung03985' => 'bca', 'BcaNung03989' => 'bca', 'BcaNung05661' => 'bca', 'BolC1t00257H' => 'bol', 'BolC1t01956H' => 'bol', 'BolC2t06534H' => 'bol', 'BolC3t14334H' => 'bol', 'BolC5t30451H' => 'bol', 'BolC7t45880H' => 'bol', 'BolC7t46586H' => 'bol', 'BolC8t49301H' => 'bol', 'BolC8t51837H' => 'bol', 'BolC9t56822H' => 'bol', 'BolC9t59235H' => 'bol', 'BraA01t00234Z' => 'bra', 'BraA01t01563Z' => 'bra', 'BraA02t05147Z' => 'bra', 'BraA03t10947Z' => 'bra', 'BraA03t14633Z' => 'bra', 'BraA08t35112Z' => 'bra', 'BraA09t41330Z' => 'bra', 'BraA10t44570Z' => 'bra', 'C01p02670' => 'bna', 'C01p20260' => 'bna', 'C02p05890' => 'bna', 'C03p19530' => 'bna', 'C05p17470' => 'bna', 'C07p53900' => 'bna', 'C07p61630' => 'bna', 'C08p16800' => 'bna', 'C08p42810' => 'bna', 'C09p39480' => 'bna', 'C09p63980' => 'bna', 'CAN.G1001.7' => 'can', 'CAN.G1034.55' => 'can', 'CAN.G143.7' => 'can', 'CAN.G3340.1' => 'can', 'CAN.G358.19' => 'can', 'CAN.G373.2' => 'can', 'CAN.G674.16' => 'can', 'CAN.G674.17' => 'can', 'CAN.G674.18' => 'can', 'CAN.G732.2' => 'can', 'CAN.G732.3' => 'can', 'CAN.G993.39' => 'can', 'CANSAT01G2052' => 'cansat', 'CANSAT80G0070' => 'cansat', 'CANSAT80G0483' => 'cansat', 'CANSAT80G0625' => 'cansat', 'CARHR019690' => 'chi', 'CARHR080280' => 'chi', 'CARHR152750' => 'chi', 'CARHR152760' => 'chi', 'CARHR152770' => 'chi', 'CARHR200340' => 'chi', 'CARHR232370' => 'chi', 'CARHR244670' => 'chi', 'CARHR244680' => 'chi', 'CARHR257520' => 'chi', 'Carub.0001s1872' => 'cru', 'Carub.0006s1130' => 'cru', 'Carub.0007s0396' => 'cru', 'Carub.0007s0397' => 'cru', 'Carub.0007s1608' => 'cru', 'Carub.0008s1068' => 'cru', 'Carub.0008s1077' => 'cru', 'Ca_16158_v3' => 'car', 'Ca_17571_v3' => 'car', 'Ca_21936_v3' => 'car', 'Ca_22350_v3' => 'car', 'CBR_g22445' => 'cbr', 'CBR_g26290' => 'cbr', 'Cc04_g09610' => 'ccan', 'Cc04_g12280' => 'ccan', 'Cc07_g10230' => 'ccan', 'CDE02G0093' => 'cde', 'CDE02G0701' => 'cde', 'CDE04G1050' => 'cde', 'CDE05G1833' => 'cde', 'CDE05G3058' => 'cde', 'CDE05G3380' => 'cde', 'CDE06G0536' => 'cde', 'Cfa006923' => 'cfa', 'Cfa009402' => 'cfa', 'Cfa018751' => 'cfa', 'Cfa019164' => 'cfa', 'Cfa022935' => 'cfa', 'Ciclev10019081m.g' => 'ccl', 'Ciclev10025076m.g' => 'ccl', 'Ciclev10030712m.g' => 'ccl', 'Ciclev10033760m.g' => 'ccl', 'CiPaw.05G105600' => 'cil', 'CiPaw.08G136700' => 'cil', 'CiPaw.11G003900' => 'cil', 'CiPaw.11G023700' => 'cil', 'CiPaw.12G003700' => 'cil', 'ClCG06G017100' => 'cla', 'ClCG06G018110' => 'cla', 'ClCG07G008800' => 'cla', 'ClCG07G015330' => 'cla', 'COL.COLO4_13698' => 'col', 'COL.COLO4_16659' => 'col', 'COL.COLO4_21986' => 'col', 'COL.COLO4_24049' => 'col', 'COL.COLO4_29061' => 'col', 'COL.COLO4_29075' => 'col', 'COL.COLO4_30094' => 'col', 'Cpa.g.c33689' => 'cpa', 'Cpa.g.sc108.39' => 'cpa', 'Cpa.g.sc108.41' => 'cpa', 'Cpa.g.sc1163.1' => 'cpa', 'Cpa.g.sc4.155' => 'cpa', 'Cpa.g.sc6.194' => 'cpa', 'CsaV3_1G000340' => 'csa', 'CsaV3_1G001400' => 'csa', 'CsaV3_4G002220' => 'csa', 'CsaV3_4G005370' => 'csa', 'CSS0007487' => 'camsi', 'CSS0008066' => 'camsi', 'CSS0009120' => 'camsi', 'CSS0015512' => 'camsi', 'CSS0022409' => 'camsi', 'CSS0025358' => 'camsi', 'CSS0044547' => 'camsi', 'DCAR_013057' => 'dca', 'DCAR_015058' => 'dca', 'DCAR_016027' => 'dca', 'DCAR_017327' => 'dca', 'DCAR_020743' => 'dca', 'DCAR_026157' => 'dca', 'DCAR_032339' => 'dca', 'DCAR_032340' => 'dca', 'Dinv11200' => 'din', 'Dinv11201' => 'din', 'Dinv20631' => 'din', 'Dinv23182' => 'din', 'Dinv33466' => 'din', 'Dinv33583' => 'din', 'Dinv38565' => 'din', 'Duzib068G0200' => 'dzi', 'Duzib147G0132' => 'dzi', 'Duzib147G0635' => 'dzi', 'Duzib205G1670' => 'dzi', 'Duzib251G0606' => 'dzi', 'ECA232G3336' => 'eca', 'ECA232G3763' => 'eca', 'ECA232G4845' => 'eca', 'ECA234G1607' => 'eca', 'ECA246G0932' => 'eca', 'ECA247G0781' => 'eca', 'ECA247G1932' => 'eca', 'ECA247G2079' => 'eca', 'ECA247G3338' => 'eca', 'ECA247G4115' => 'eca', 'EL10Ac3g06552' => 'bvu', 'EL10Ac5g10721' => 'bvu', 'EL10Ac5g10722' => 'bvu', 'EL10Ac5g10723' => 'bvu', 'EL10Ac5g11361' => 'bvu', 'EL10Ac6g13553' => 'bvu', 'EL10As8g23872' => 'bvu', 'Eucgr.B00250' => 'egr', 'Eucgr.B00251' => 'egr', 'Eucgr.B03533' => 'egr', 'Eucgr.I02381' => 'egr', 'Eucgr.K02700' => 'egr', 'FAN02G0174' => 'fan', 'FAN02G3146' => 'fan', 'FAN04G1672' => 'fan', 'FAN04G2273' => 'fan', 'FAN05G2791' => 'fan', 'FAN05G4035' => 'fan', 'FAN07G0834' => 'fan', 'FAN08G1198' => 'fan', 'FAN09G4182' => 'fan', 'FAN12G0496' => 'fan', 'FAN13G1027' => 'fan', 'FAN13G2951' => 'fan', 'FAN14G0705' => 'fan', 'FAN14G0720' => 'fan', 'FAN17G0201' => 'fan', 'FAN17G2665' => 'fan', 'FAN18G1456' => 'fan', 'FAN18G1525' => 'fan', 'FAN18G3500' => 'fan', 'FAN28G2670' => 'fan', 'FvH4_1g12391' => 'fve', 'FvH4_4g23220' => 'fve', 'FvH4_5g08810' => 'fve', 'FvH4_5g28960' => 'fve', 'FvH4_6g42820' => 'fve', 'FvH4_6g51110' => 'fve', 'Glyma.02G051802' => 'gma', 'Glyma.04G185300' => 'gma', 'Glyma.05G202900' => 'gma', 'Glyma.08G010300' => 'gma', 'Glyma.16G131900' => 'gma', 'Glyma.17G087900' => 'gma', 'Gohir.A07G048600' => 'ghi', 'Gohir.A11G179000' => 'ghi', 'Gohir.A12G140900' => 'ghi', 'Gohir.A12G140950' => 'ghi', 'Gohir.A12G191700' => 'ghi', 'Gohir.A13G086300' => 'ghi', 'Gohir.D07G052900' => 'ghi', 'Gohir.D11G186600' => 'ghi', 'Gohir.D12G145575' => 'ghi', 'Gohir.D12G145650' => 'ghi', 'Gohir.D12G145725' => 'ghi', 'Gohir.D12G194050' => 'ghi', 'Gohir.D13G091800' => 'ghi', 'Gorai.001G055900' => 'gra', 'Gorai.007G198400' => 'gra', 'Gorai.008G157000' => 'gra', 'Gorai.008G157100' => 'gra', 'Gorai.008G208700' => 'gra', 'Gorai.010G138700' => 'gra', 'GSVIVG01000977001' => 'vvi', 'GSVIVG01007708001' => 'vvi', 'GSVIVG01008587001' => 'vvi', 'GSVIVG01018849001' => 'vvi', 'GSVIVG01032432001' => 'vvi', 'HanXRQChr02g0034131' => 'han', 'HanXRQChr02g0035981' => 'han', 'HanXRQChr02g0035991' => 'han', 'HanXRQChr05g0155611' => 'han', 'HanXRQChr05g0155621' => 'han', 'HanXRQChr08g0236501' => 'han', 'HanXRQChr09g0261321' => 'han', 'HanXRQChr09g0272081' => 'han', 'HanXRQChr10g0310741' => 'han', 'HanXRQChr11g0325591' => 'han', 'HanXRQChr12g0385691' => 'han', 'HanXRQChr13g0387801' => 'han', 'HanXRQChr15g0463011' => 'han', 'Haze_03826' => 'cav', 'Haze_03827' => 'cav', 'Haze_07183' => 'cav', 'Haze_07537' => 'cav', 'Haze_07539' => 'cav', 'Haze_12461' => 'cav', 'Haze_16115' => 'cav', 'Haze_16808' => 'cav', 'Haze_18531' => 'cav', 'Hma1.2p1_0046F.1_g026700' => 'hma', 'Hma1.2p1_0046F.1_g026710' => 'hma', 'Hma1.2p1_0168F.1_g074340' => 'hma', 'Hma1.2p1_0266F.1_g107030' => 'hma', 'Hma1.2p1_0266F.1_g107060' => 'hma', 'Hma1.2p1_0275F.1_g110510' => 'hma', 'Hma1.2p1_0592F.1_g185490' => 'hma', 'Hma1.2p1_0592F.1_g185500' => 'hma', 'Hma1.2p1_0592F.1_g185510' => 'hma', 'Hma1.2p1_0592F.1_g185520' => 'hma', 'Hma1.2p1_0592F.1_g185530' => 'hma', 'Hma1.2p1_0818F.1_g223450' => 'hma', 'HPP92_009708' => 'vpl', 'HPP92_009793' => 'vpl', 'HPP92_009796' => 'vpl', 'HPP92_009797' => 'vpl', 'HPP92_014940' => 'vpl', 'HPP92_014988' => 'vpl', 'Hund02463' => 'sun', 'Hund02760' => 'sun', 'Hund05071' => 'sun', 'Hund10108' => 'sun', 'Hund11204' => 'sun', 'Hund14016' => 'sun', 'Hund16464' => 'sun', 'Lalb_Chr09g0333391' => 'lal', 'Lalb_Chr11g0070461' => 'lal', 'Lalb_Chr12g0201671' => 'lal', 'Lalb_Chr13g0297161' => 'lal', 'Lj1g0002823' => 'lja', 'Lj3C1074T6' => 'lonja', 'Lj4A212T28' => 'lonja', 'Lj4g0005516' => 'lja', 'Lj4g0013705' => 'lja', 'Lj4g0027865' => 'lja', 'Lj5C92G16' => 'lonja', 'Lj5C92T12' => 'lonja', 'Lj7C596T3' => 'lonja', 'Lj9A446G59' => 'lonja', 'Lj9A482G21' => 'lonja', 'Lsat_1_v5_gn_1_28261' => 'lsa', 'Lsat_1_v5_gn_1_28281' => 'lsa', 'Lsat_1_v5_gn_1_32721' => 'lsa', 'Lsat_1_v5_gn_4_151760' => 'lsa', 'Lsat_1_v5_gn_4_2120' => 'lsa', 'Lsat_1_v5_gn_4_75761' => 'lsa', 'Lsat_1_v5_gn_5_10920' => 'lsa', 'Manes.02G099900' => 'mes', 'Manes.11G096200' => 'mes', 'Manes.12G007200' => 'mes', 'Manes.14G048300' => 'mes', 'Manes.17G114700' => 'mes', 'Mapoly0002s0070' => 'mpo', 'Mapoly0029s0099' => 'mpo', 'MBI07_g24742_MAGBIO' => 'mbi', 'MBI10_g27988_MAGBIO' => 'mbi', 'MBI11_g13057_MAGBIO' => 'mbi', 'MD02G1137200' => 'mdo', 'MD06G1137200' => 'mdo', 'MD07G1122300' => 'mdo', 'MD09G1078200' => 'mdo', 'MD13G1123700' => 'mdo', 'MD14G1151900' => 'mdo', 'MD17G1030900' => 'mdo', 'MD17G1068200' => 'mdo', 'MD17G1068600' => 'mdo', 'Medtr3g077540' => 'mtr', 'Medtr4g105530' => 'mtr', 'Medtr8g076580' => 'mtr', 'Medtr8g076590' => 'mtr', 'Medtr8g096410' => 'mtr', 'MELO3C016411.2' => 'cme', 'MELO3C017780.2' => 'cme', 'MELO3C022560.2' => 'cme', 'MELO3C026187.2' => 'cme', 'MELO3C026286.2' => 'cme', 'MELO3C032854.2' => 'cme', 'Migut.H02495' => 'egut', 'Migut.I00561' => 'egut', 'Migut.K01015' => 'egut', 'Migut.K01016' => 'egut', 'Migut.L00743' => 'egut', 'Migut.L00744' => 'egut', 'Migut.L00746' => 'egut', 'Migut.L00798' => 'egut', 'Migut.L00799' => 'egut', 'Migut.N02096' => 'egut', 'MSTRG.11259' => 'ama', 'MSTRG.23142' => 'ama', 'MSTRG.2499' => 'ama', 'Nitab4.5_0000003g0730' => 'nta', 'Nitab4.5_0000137g0020' => 'nta', 'Nitab4.5_0000721g0210' => 'nta', 'Nitab4.5_0000723g0050' => 'nta', 'Nitab4.5_0000913g0070' => 'nta', 'Nitab4.5_0001332g0040' => 'nta', 'Nitab4.5_0001771g0050' => 'nta', 'Nitab4.5_0001918g0050' => 'nta', 'Nitab4.5_0002686g0030' => 'nta', 'Nitab4.5_0003156g0020' => 'nta', 'Nitab4.5_0003383g0040' => 'nta', 'Nitab4.5_0003918g0010' => 'nta', 'Nitab4.5_0006760g0010' => 'nta', 'Nn1g05981' => 'nnu', 'Nn1g06288' => 'nnu', 'Nn3g16371' => 'nnu', 'Nn3g16786' => 'nnu', 'Nn4g22232' => 'nnu', 'Oeu005144.1' => 'oeu', 'Oeu005145.1' => 'oeu', 'Oeu011348.1' => 'oeu', 'Oeu016415.1' => 'oeu', 'Oeu023501.1' => 'oeu', 'Oeu044473.1' => 'oeu', 'Oeu048892.2' => 'oeu', 'Os01g0549200' => 'osa', 'Os02g0469300' => 'osa', 'Os04g0311100' => 'osa', 'Os06g0474900' => 'osa', 'Os10g0181700' => 'osa', 'Os11g0454800' => 'osa', 'Peaxi162Scf00037g00714' => 'pax', 'Peaxi162Scf00084g01217' => 'pax', 'Peaxi162Scf00257g00217' => 'pax', 'Peaxi162Scf00516g00215' => 'pax', 'Peaxi162Scf00689g00123' => 'pax', 'PGR044G2719' => 'pgr', 'PGR083G1360' => 'pgr', 'PGR102G2849' => 'pgr', 'PGR119G2534' => 'pgr', 'PGSC0003DMG400003538' => 'stu', 'PGSC0003DMG400028138' => 'stu', 'PGSC0003DMG400031732' => 'stu', 'PGSC0003DMG400038165' => 'stu', 'Phvul.002G284600' => 'pvu', 'Phvul.003G258200' => 'pvu', 'Phvul.009G176500' => 'pvu', 'Potri.003G167201' => 'ptr', 'Potri.005G118400' => 'ptr', 'Potri.012G089000' => 'ptr', 'Potri.012G102800' => 'ptr', 'Potri.015G079400' => 'ptr', 'Potri.015G100900' => 'ptr', 'Pp3c14_9810' => 'ppa', 'Pp3c15_10450' => 'ppa', 'Pp3c20_19150' => 'ppa', 'Pp3c23_12740' => 'ppa', 'Pp3c23_6310' => 'ppa', 'Pp3c24_3720' => 'ppa', 'Pp3c27_2580' => 'ppa', 'Pp3c9_8990' => 'ppa', 'PRCOL_00002854' => 'pco', 'Prupe.1G221200' => 'ppe', 'Prupe.3G289000' => 'ppe', 'Prupe.5G147000' => 'ppe', 'Prupe.6G157300' => 'ppe', 'Prupe.7G163400' => 'ppe', 'Psat0s2177g0040' => 'psa', 'Psat3g174760' => 'psa', 'Psat3g192160' => 'psa', 'Psat4g058520' => 'psa', 'Psat4g096840' => 'psa', 'Psat7g037320' => 'psa', 'PSO017G1274' => 'pso', 'PSO017G5166' => 'pso', 'PSO063G4558' => 'pso', 'PSO170G4458' => 'pso', 'PSO170G5005' => 'pso', 'PSO210G6156' => 'pso', 'PSO210G6635' => 'pso', 'PSO210G7397' => 'pso', 'PSO210G7700' => 'pso', 'PSO455G0035' => 'pso', 'PSO455G0180' => 'pso', 'PSO478G4515' => 'pso', 'PSO832G1305' => 'pso', 'PSO832G3489' => 'pso', 'QL02p075247' => 'qlo', 'QL03p051148' => 'qlo', 'QL05p010313' => 'qlo', 'QL06p034627' => 'qlo', 'QL10p001889' => 'qlo', 'QL10p010846' => 'qlo', 'RcHm_v2.0_Chr1g0350621' => 'rch', 'RcHm_v2.0_Chr1g0350641' => 'rch', 'RcHm_v2.0_Chr2g0092891' => 'rch', 'RcHm_v2.0_Chr2g0100251' => 'rch', 'RcHm_v2.0_Chr2g0158661' => 'rch', 'RcHm_v2.0_Chr2g0172741' => 'rch', 'RcHm_v2.0_Chr4g0429571' => 'rch', 'RcHm_v2.0_Chr5g0042471' => 'rch', 'RcHm_v2.0_Chr7g0189451' => 'rch', 'Rhsim08G0052000' => 'rsi', 'Rhsim08G0174400' => 'rsi', 'Rhsim08G0193200' => 'rsi', 'Rhsim10G0214800' => 'rsi', 'Rhsim10G0214900' => 'rsi', 'Rhsim10G0215000' => 'rsi', 'Rhsim12G0022900' => 'rsi', 'Rhsim12G0177500' => 'rsi', 'Rhsim12G0177700' => 'rsi', 'Sabra03G0122600' => 'sbr', 'Sabra05G0097400' => 'sbr', 'Sabra12G0064100' => 'sbr', 'Sabra15G0121300' => 'sbr', 'SalBow2G0642' => 'sbo', 'SalBow5G2667' => 'sbo', 'SalBow5G4873' => 'sbo', 'SalBow8G2395' => 'sbo', 'Sc03g0003290' => 'sci', 'Sc10g0010130' => 'sci', 'Sc22g0003650' => 'sci', 'Sed0001603' => 'sed', 'Sed0004259' => 'sed', 'Sed0006789' => 'sed', 'Sed0011838' => 'sed', 'Sed0012964' => 'sed', 'Sed0016383' => 'sed', 'Sed0019010' => 'sed', 'Sed0020188' => 'sed', 'SEGI_04702' => 'sgi', 'SEGI_17231' => 'sgi', 'SEGI_18877' => 'sgi', 'SEGI_25196' => 'sgi', 'SEGI_25515' => 'sgi', 'SEGI_28445' => 'sgi', 'SEGI_37452' => 'sgi', 'SGA_v2.0_scaffold188G40336' => 'sas', 'SGA_v2.0_scaffold228G43247' => 'sas', 'SGA_v2.0_scaffold280G46853' => 'sas', 'SGA_v2.0_scaffold34G13808' => 'sas', 'SGA_v2.0_scaffold40G15576' => 'sas', 'SGA_v2.0_scaffold611G53188' => 'sas', 'SGA_v2.0_scaffold78G25461' => 'sas', 'SGA_v2.0_scaffold90G27888' => 'sas', 'SHI08601' => 'shi', 'SHI08606' => 'shi', 'SHI17117' => 'shi', 'SHI17119' => 'shi', 'SMO118G0201' => 'smo', 'SMO169G0247' => 'smo', 'SMO176G0006' => 'smo', 'SMO176G0015' => 'smo', 'SMO202G0006' => 'smo', 'SMO240G0050' => 'smo', 'SMO286G0009' => 'smo', 'SMO338G0033' => 'smo', 'SMO356G0533' => 'smo', 'SMO364G0382' => 'smo', 'SMO367G0166' => 'smo', 'SMO367G1098' => 'smo', 'Solyc01g009920.3' => 'sly', 'Solyc01g099300.3' => 'sly', 'Solyc02g084700.3' => 'sly', 'Solyc03g097520.3' => 'sly', 'Solyc06g071580.3' => 'sly', 'Solyc10g081760.3' => 'sly', 'Sopen01g005480' => 'spe', 'Sopen01g042850' => 'spe', 'Sopen02g029370' => 'spe', 'Sopen03g028280' => 'spe', 'Sopen06g027870' => 'spe', 'Sopen10g032270' => 'spe', 'Sp5g18180' => 'spa', 'Sp6g12880' => 'spa', 'Sp6g30850' => 'spa', 'Sp7g22960' => 'spa', 'Sp7g34010' => 'spa', 'SpUn1326_0010' => 'spa', 'TAR371G0242' => 'tar', 'TAR622G0638' => 'tar', 'TAR628G1548' => 'tar', 'TAR629G1079' => 'tar', 'TAR629G3413' => 'tar', 'THA.LOC104804249' => 'tha', 'THA.LOC104808315' => 'tha', 'THA.LOC104809238' => 'tha', 'THA.LOC104825484' => 'tha', 'Thecc.01G025500' => 'tca', 'Thecc.03G015800' => 'tca', 'Thecc.03G018000' => 'tca', 'Thecc.03G134800' => 'tca', 'Thecc.04G014700' => 'tca', 'Thhalv10006991m.g' => 'esa', 'Thhalv10012707m.g' => 'esa', 'Thhalv10015739m.g' => 'esa', 'Thhalv10024553m.g' => 'esa', 'Thhalv10024673m.g' => 'esa', 'Thhalv10029187m.g' => 'esa', 'TPR.G12971' => 'tpr', 'TPR.G29396' => 'tpr', 'TPR.G33376' => 'tpr', 'TPR.G35508' => 'tpr', 'TPR.G35516' => 'tpr', 'TPR.G37317' => 'tpr', 'TPR.G37389' => 'tpr', 'TPR.G37523' => 'tpr', 'TPR.G559' => 'tpr', 'TWI14G0070' => 'twi', 'TWI14G0729' => 'twi', 'TWI18G0596' => 'twi', 'TWI39G0780' => 'twi', 'TWI39G0850' => 'twi', 'TWI73G1052' => 'twi', 'unitig_52.g17485' => 'ugi', 'unitig_61.g26355' => 'ugi', 'vmacro01040' => 'vma', 'vmacro16731' => 'vma', 'vmacro18270' => 'vma', 'vmacro19142' => 'vma', 'vmacro19407' => 'vma', 'vmacro19408' => 'vma', 'vmacro21899' => 'vma', 'vmacro21900' => 'vma', 'vmacro21901' => 'vma', 'VMungo0251G0490' => 'vmu', 'VMungo0251G1748' => 'vmu', 'VMungo1309G0421' => 'vmu', 'Zm00001eb086500' => 'zma', 'Zm00001eb150680' => 'zma', 'Zm00001eb162330' => 'zma', 'Zm00001eb203130' => 'zma', 'Zm00001eb369480' => 'zma', 'Zm00001eb382340' => 'zma', 'Zm00001eb416360' => 'zma' ) $gf_id = 'HOM05D000902' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000902' ) $data_identifier = 'HOM05D000902' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 13, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 10, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 6, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 9, 'hma' => (int) 12, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 4, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 6, 'ppa' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 6, 'rch' => (int) 9, 'rsi' => (int) 9, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 12, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 3, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416360' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000902', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '663', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02470' => 'bna', 'A01p16260' => 'bna', 'A02p01680' => 'bna', 'A03p16600' => 'bna', 'A03p55660' => 'bna', 'A03p64160' => 'bna', 'A03p64170' => 'bna', 'A08p31900' => 'bna', 'A09p59530' => 'bna', 'A10p08230' => 'bna', 'A10p25090' => 'bna', 'Aa31LG3G7100' => 'aar', 'Aa31LG3G7110' => 'aar', 'Aa31LG6G13160' => 'aar', 'Aa31LG7G10770' => 'aar', 'Aa31LG7G3830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2723' => 'aag', 'Actinidia08045' => 'ach', 'Actinidia08888' => 'ach', 'Actinidia18333' => 'ach', 'Actinidia19334' => 'ach', 'Actinidia25552' => 'ach', 'Actinidia26089' => 'ach', 'Actinidia30615' => 'ach', 'Actinidia30616' => 'ach', 'Actinidia33083' => 'ach', 'Actinidia35762' => 'ach', 'Ah.02g110620' => 'amhyb', 'Ah.11g046390' => 'amhyb', 'AL1G31670' => 'aly', 'AL6G23730' => 'aly', 'AL7G14740' => 'aly', 'AL7G14750' => 'aly', 'AL7G14760' => 'aly', 'AL7G28220' => 'aly', 'AL8G24940' => 'aly', 'Aqoxy3G01665' => 'aox', 'Aqoxy3G02853' => 'aox', 'Aqoxy5G01513' => 'aox', 'Aqoxy5G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8SKA4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ75LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKDA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0LJZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7REX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZP4YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWX7I5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2QKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS0L9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPCD8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q161UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC7XCF' => 'arhy', 'AT1G19100' => 'ath', 'AT4G24970' => 'ath', 'AT4G36270' => 'ath', 'AT4G36280' => 'ath', 'AT4G36290' => 'ath', 'AT5G13130' => 'ath', 'AT5G50780' => 'ath', 'ATR0582G266' => 'atr', 'ATR0661G195' => 'atr', 'ATR1152G031' => 'atr', 'Atru.chr11.2382' => 'acertr', 'Atru.chr12.2337' => 'acertr', 'Atru.chr3.744' => 'acertr', 'Atru.chr6.1870' => 'acertr', 'Atru.chr9.2515' => 'acertr', 'AUR62004120' => 'cqu', 'AUR62005667' => 'cqu', 'AUR62007634' => 'cqu', 'AUR62008186' => 'cqu', 'AUR62008187' => 'cqu', 'AUR62008188' => 'cqu', 'AUR62027954' => 'cqu', 'AUR62028766' => 'cqu', 'AUR62028767' => 'cqu', 'AUR62028768' => 'cqu', 'AUR62028886' => 'cqu', 'AUR62029563' => 'cqu', 'AUR62038832' => 'cqu', 'BcaB01g04149' => 'bca', 'BcaB03g12940' => 'bca', 'BcaB03g13090' => 'bca', 'BcaB03g14466' => 'bca', 'BcaB05g24035' => 'bca', 'BcaC01g06050' => 'bca', 'BcaC04g19148' => 'bca', 'BcaC04g20761' => 'bca', 'BcaC06g32845' => 'bca', 'BcaC07g41274' => 'bca', 'BcaC09g50827' => 'bca', 'BcaNung00741' => 'bca', 'BcaNung00742' => 'bca', 'BcaNung01859' => 'bca', 'BcaNung03985' => 'bca', 'BcaNung03989' => 'bca', 'BcaNung05661' => 'bca', 'BolC1t00257H' => 'bol', 'BolC1t01956H' => 'bol', 'BolC2t06534H' => 'bol', 'BolC3t14334H' => 'bol', 'BolC5t30451H' => 'bol', 'BolC7t45880H' => 'bol', 'BolC7t46586H' => 'bol', 'BolC8t49301H' => 'bol', 'BolC8t51837H' => 'bol', 'BolC9t56822H' => 'bol', 'BolC9t59235H' => 'bol', 'BraA01t00234Z' => 'bra', 'BraA01t01563Z' => 'bra', 'BraA02t05147Z' => 'bra', 'BraA03t10947Z' => 'bra', 'BraA03t14633Z' => 'bra', 'BraA08t35112Z' => 'bra', 'BraA09t41330Z' => 'bra', 'BraA10t44570Z' => 'bra', 'C01p02670' => 'bna', 'C01p20260' => 'bna', 'C02p05890' => 'bna', 'C03p19530' => 'bna', 'C05p17470' => 'bna', 'C07p53900' => 'bna', 'C07p61630' => 'bna', 'C08p16800' => 'bna', 'C08p42810' => 'bna', 'C09p39480' => 'bna', 'C09p63980' => 'bna', 'CAN.G1001.7' => 'can', 'CAN.G1034.55' => 'can', 'CAN.G143.7' => 'can', 'CAN.G3340.1' => 'can', 'CAN.G358.19' => 'can', 'CAN.G373.2' => 'can', 'CAN.G674.16' => 'can', 'CAN.G674.17' => 'can', 'CAN.G674.18' => 'can', 'CAN.G732.2' => 'can', 'CAN.G732.3' => 'can', 'CAN.G993.39' => 'can', 'CANSAT01G2052' => 'cansat', 'CANSAT80G0070' => 'cansat', 'CANSAT80G0483' => 'cansat', 'CANSAT80G0625' => 'cansat', 'CARHR019690' => 'chi', 'CARHR080280' => 'chi', 'CARHR152750' => 'chi', 'CARHR152760' => 'chi', 'CARHR152770' => 'chi', 'CARHR200340' => 'chi', 'CARHR232370' => 'chi', 'CARHR244670' => 'chi', 'CARHR244680' => 'chi', 'CARHR257520' => 'chi', 'Carub.0001s1872' => 'cru', 'Carub.0006s1130' => 'cru', 'Carub.0007s0396' => 'cru', 'Carub.0007s0397' => 'cru', 'Carub.0007s1608' => 'cru', 'Carub.0008s1068' => 'cru', 'Carub.0008s1077' => 'cru', 'Ca_16158_v3' => 'car', 'Ca_17571_v3' => 'car', 'Ca_21936_v3' => 'car', 'Ca_22350_v3' => 'car', 'CBR_g22445' => 'cbr', 'CBR_g26290' => 'cbr', 'Cc04_g09610' => 'ccan', 'Cc04_g12280' => 'ccan', 'Cc07_g10230' => 'ccan', 'CDE02G0093' => 'cde', 'CDE02G0701' => 'cde', 'CDE04G1050' => 'cde', 'CDE05G1833' => 'cde', 'CDE05G3058' => 'cde', 'CDE05G3380' => 'cde', 'CDE06G0536' => 'cde', 'Cfa006923' => 'cfa', 'Cfa009402' => 'cfa', 'Cfa018751' => 'cfa', 'Cfa019164' => 'cfa', 'Cfa022935' => 'cfa', 'Ciclev10019081m.g' => 'ccl', 'Ciclev10025076m.g' => 'ccl', 'Ciclev10030712m.g' => 'ccl', 'Ciclev10033760m.g' => 'ccl', 'CiPaw.05G105600' => 'cil', 'CiPaw.08G136700' => 'cil', 'CiPaw.11G003900' => 'cil', 'CiPaw.11G023700' => 'cil', 'CiPaw.12G003700' => 'cil', 'ClCG06G017100' => 'cla', 'ClCG06G018110' => 'cla', 'ClCG07G008800' => 'cla', 'ClCG07G015330' => 'cla', 'COL.COLO4_13698' => 'col', 'COL.COLO4_16659' => 'col', 'COL.COLO4_21986' => 'col', 'COL.COLO4_24049' => 'col', 'COL.COLO4_29061' => 'col', 'COL.COLO4_29075' => 'col', 'COL.COLO4_30094' => 'col', 'Cpa.g.c33689' => 'cpa', 'Cpa.g.sc108.39' => 'cpa', 'Cpa.g.sc108.41' => 'cpa', 'Cpa.g.sc1163.1' => 'cpa', 'Cpa.g.sc4.155' => 'cpa', 'Cpa.g.sc6.194' => 'cpa', 'CsaV3_1G000340' => 'csa', 'CsaV3_1G001400' => 'csa', 'CsaV3_4G002220' => 'csa', 'CsaV3_4G005370' => 'csa', 'CSS0007487' => 'camsi', 'CSS0008066' => 'camsi', 'CSS0009120' => 'camsi', 'CSS0015512' => 'camsi', 'CSS0022409' => 'camsi', 'CSS0025358' => 'camsi', 'CSS0044547' => 'camsi', 'DCAR_013057' => 'dca', 'DCAR_015058' => 'dca', 'DCAR_016027' => 'dca', 'DCAR_017327' => 'dca', 'DCAR_020743' => 'dca', 'DCAR_026157' => 'dca', 'DCAR_032339' => 'dca', 'DCAR_032340' => 'dca', 'Dinv11200' => 'din', 'Dinv11201' => 'din', 'Dinv20631' => 'din', 'Dinv23182' => 'din', 'Dinv33466' => 'din', 'Dinv33583' => 'din', 'Dinv38565' => 'din', 'Duzib068G0200' => 'dzi', 'Duzib147G0132' => 'dzi', 'Duzib147G0635' => 'dzi', 'Duzib205G1670' => 'dzi', 'Duzib251G0606' => 'dzi', 'ECA232G3336' => 'eca', 'ECA232G3763' => 'eca', 'ECA232G4845' => 'eca', 'ECA234G1607' => 'eca', 'ECA246G0932' => 'eca', 'ECA247G0781' => 'eca', 'ECA247G1932' => 'eca', 'ECA247G2079' => 'eca', 'ECA247G3338' => 'eca', 'ECA247G4115' => 'eca', 'EL10Ac3g06552' => 'bvu', 'EL10Ac5g10721' => 'bvu', 'EL10Ac5g10722' => 'bvu', 'EL10Ac5g10723' => 'bvu', 'EL10Ac5g11361' => 'bvu', 'EL10Ac6g13553' => 'bvu', 'EL10As8g23872' => 'bvu', 'Eucgr.B00250' => 'egr', 'Eucgr.B00251' => 'egr', 'Eucgr.B03533' => 'egr', 'Eucgr.I02381' => 'egr', 'Eucgr.K02700' => 'egr', 'FAN02G0174' => 'fan', 'FAN02G3146' => 'fan', 'FAN04G1672' => 'fan', 'FAN04G2273' => 'fan', 'FAN05G2791' => 'fan', 'FAN05G4035' => 'fan', 'FAN07G0834' => 'fan', 'FAN08G1198' => 'fan', 'FAN09G4182' => 'fan', 'FAN12G0496' => 'fan', 'FAN13G1027' => 'fan', 'FAN13G2951' => 'fan', 'FAN14G0705' => 'fan', 'FAN14G0720' => 'fan', 'FAN17G0201' => 'fan', 'FAN17G2665' => 'fan', 'FAN18G1456' => 'fan', 'FAN18G1525' => 'fan', 'FAN18G3500' => 'fan', 'FAN28G2670' => 'fan', 'FvH4_1g12391' => 'fve', 'FvH4_4g23220' => 'fve', 'FvH4_5g08810' => 'fve', 'FvH4_5g28960' => 'fve', 'FvH4_6g42820' => 'fve', 'FvH4_6g51110' => 'fve', 'Glyma.02G051802' => 'gma', 'Glyma.04G185300' => 'gma', 'Glyma.05G202900' => 'gma', 'Glyma.08G010300' => 'gma', 'Glyma.16G131900' => 'gma', 'Glyma.17G087900' => 'gma', 'Gohir.A07G048600' => 'ghi', 'Gohir.A11G179000' => 'ghi', 'Gohir.A12G140900' => 'ghi', 'Gohir.A12G140950' => 'ghi', 'Gohir.A12G191700' => 'ghi', 'Gohir.A13G086300' => 'ghi', 'Gohir.D07G052900' => 'ghi', 'Gohir.D11G186600' => 'ghi', 'Gohir.D12G145575' => 'ghi', 'Gohir.D12G145650' => 'ghi', 'Gohir.D12G145725' => 'ghi', 'Gohir.D12G194050' => 'ghi', 'Gohir.D13G091800' => 'ghi', 'Gorai.001G055900' => 'gra', 'Gorai.007G198400' => 'gra', 'Gorai.008G157000' => 'gra', 'Gorai.008G157100' => 'gra', 'Gorai.008G208700' => 'gra', 'Gorai.010G138700' => 'gra', 'GSVIVG01000977001' => 'vvi', 'GSVIVG01007708001' => 'vvi', 'GSVIVG01008587001' => 'vvi', 'GSVIVG01018849001' => 'vvi', 'GSVIVG01032432001' => 'vvi', 'HanXRQChr02g0034131' => 'han', 'HanXRQChr02g0035981' => 'han', 'HanXRQChr02g0035991' => 'han', 'HanXRQChr05g0155611' => 'han', 'HanXRQChr05g0155621' => 'han', 'HanXRQChr08g0236501' => 'han', 'HanXRQChr09g0261321' => 'han', 'HanXRQChr09g0272081' => 'han', 'HanXRQChr10g0310741' => 'han', 'HanXRQChr11g0325591' => 'han', 'HanXRQChr12g0385691' => 'han', 'HanXRQChr13g0387801' => 'han', 'HanXRQChr15g0463011' => 'han', 'Haze_03826' => 'cav', 'Haze_03827' => 'cav', 'Haze_07183' => 'cav', 'Haze_07537' => 'cav', 'Haze_07539' => 'cav', 'Haze_12461' => 'cav', 'Haze_16115' => 'cav', 'Haze_16808' => 'cav', 'Haze_18531' => 'cav', 'Hma1.2p1_0046F.1_g026700' => 'hma', 'Hma1.2p1_0046F.1_g026710' => 'hma', 'Hma1.2p1_0168F.1_g074340' => 'hma', 'Hma1.2p1_0266F.1_g107030' => 'hma', 'Hma1.2p1_0266F.1_g107060' => 'hma', 'Hma1.2p1_0275F.1_g110510' => 'hma', 'Hma1.2p1_0592F.1_g185490' => 'hma', 'Hma1.2p1_0592F.1_g185500' => 'hma', 'Hma1.2p1_0592F.1_g185510' => 'hma', 'Hma1.2p1_0592F.1_g185520' => 'hma', 'Hma1.2p1_0592F.1_g185530' => 'hma', 'Hma1.2p1_0818F.1_g223450' => 'hma', 'HPP92_009708' => 'vpl', 'HPP92_009793' => 'vpl', 'HPP92_009796' => 'vpl', 'HPP92_009797' => 'vpl', 'HPP92_014940' => 'vpl', 'HPP92_014988' => 'vpl', 'Hund02463' => 'sun', 'Hund02760' => 'sun', 'Hund05071' => 'sun', 'Hund10108' => 'sun', 'Hund11204' => 'sun', 'Hund14016' => 'sun', 'Hund16464' => 'sun', 'Lalb_Chr09g0333391' => 'lal', 'Lalb_Chr11g0070461' => 'lal', 'Lalb_Chr12g0201671' => 'lal', 'Lalb_Chr13g0297161' => 'lal', 'Lj1g0002823' => 'lja', 'Lj3C1074T6' => 'lonja', 'Lj4A212T28' => 'lonja', 'Lj4g0005516' => 'lja', 'Lj4g0013705' => 'lja', 'Lj4g0027865' => 'lja', 'Lj5C92G16' => 'lonja', 'Lj5C92T12' => 'lonja', 'Lj7C596T3' => 'lonja', 'Lj9A446G59' => 'lonja', 'Lj9A482G21' => 'lonja', 'Lsat_1_v5_gn_1_28261' => 'lsa', 'Lsat_1_v5_gn_1_28281' => 'lsa', 'Lsat_1_v5_gn_1_32721' => 'lsa', 'Lsat_1_v5_gn_4_151760' => 'lsa', 'Lsat_1_v5_gn_4_2120' => 'lsa', 'Lsat_1_v5_gn_4_75761' => 'lsa', 'Lsat_1_v5_gn_5_10920' => 'lsa', 'Manes.02G099900' => 'mes', 'Manes.11G096200' => 'mes', 'Manes.12G007200' => 'mes', 'Manes.14G048300' => 'mes', 'Manes.17G114700' => 'mes', 'Mapoly0002s0070' => 'mpo', 'Mapoly0029s0099' => 'mpo', 'MBI07_g24742_MAGBIO' => 'mbi', 'MBI10_g27988_MAGBIO' => 'mbi', 'MBI11_g13057_MAGBIO' => 'mbi', 'MD02G1137200' => 'mdo', 'MD06G1137200' => 'mdo', 'MD07G1122300' => 'mdo', 'MD09G1078200' => 'mdo', 'MD13G1123700' => 'mdo', 'MD14G1151900' => 'mdo', 'MD17G1030900' => 'mdo', 'MD17G1068200' => 'mdo', 'MD17G1068600' => 'mdo', 'Medtr3g077540' => 'mtr', 'Medtr4g105530' => 'mtr', 'Medtr8g076580' => 'mtr', 'Medtr8g076590' => 'mtr', 'Medtr8g096410' => 'mtr', 'MELO3C016411.2' => 'cme', 'MELO3C017780.2' => 'cme', 'MELO3C022560.2' => 'cme', 'MELO3C026187.2' => 'cme', 'MELO3C026286.2' => 'cme', 'MELO3C032854.2' => 'cme', 'Migut.H02495' => 'egut', 'Migut.I00561' => 'egut', 'Migut.K01015' => 'egut', 'Migut.K01016' => 'egut', 'Migut.L00743' => 'egut', 'Migut.L00744' => 'egut', 'Migut.L00746' => 'egut', 'Migut.L00798' => 'egut', 'Migut.L00799' => 'egut', 'Migut.N02096' => 'egut', 'MSTRG.11259' => 'ama', 'MSTRG.23142' => 'ama', 'MSTRG.2499' => 'ama', 'Nitab4.5_0000003g0730' => 'nta', 'Nitab4.5_0000137g0020' => 'nta', 'Nitab4.5_0000721g0210' => 'nta', 'Nitab4.5_0000723g0050' => 'nta', 'Nitab4.5_0000913g0070' => 'nta', 'Nitab4.5_0001332g0040' => 'nta', 'Nitab4.5_0001771g0050' => 'nta', 'Nitab4.5_0001918g0050' => 'nta', 'Nitab4.5_0002686g0030' => 'nta', 'Nitab4.5_0003156g0020' => 'nta', 'Nitab4.5_0003383g0040' => 'nta', 'Nitab4.5_0003918g0010' => 'nta', 'Nitab4.5_0006760g0010' => 'nta', 'Nn1g05981' => 'nnu', 'Nn1g06288' => 'nnu', 'Nn3g16371' => 'nnu', 'Nn3g16786' => 'nnu', 'Nn4g22232' => 'nnu', 'Oeu005144.1' => 'oeu', 'Oeu005145.1' => 'oeu', 'Oeu011348.1' => 'oeu', 'Oeu016415.1' => 'oeu', 'Oeu023501.1' => 'oeu', 'Oeu044473.1' => 'oeu', 'Oeu048892.2' => 'oeu', 'Os01g0549200' => 'osa', 'Os02g0469300' => 'osa', 'Os04g0311100' => 'osa', 'Os06g0474900' => 'osa', 'Os10g0181700' => 'osa', 'Os11g0454800' => 'osa', 'Peaxi162Scf00037g00714' => 'pax', 'Peaxi162Scf00084g01217' => 'pax', 'Peaxi162Scf00257g00217' => 'pax', 'Peaxi162Scf00516g00215' => 'pax', 'Peaxi162Scf00689g00123' => 'pax', 'PGR044G2719' => 'pgr', 'PGR083G1360' => 'pgr', 'PGR102G2849' => 'pgr', 'PGR119G2534' => 'pgr', 'PGSC0003DMG400003538' => 'stu', 'PGSC0003DMG400028138' => 'stu', 'PGSC0003DMG400031732' => 'stu', 'PGSC0003DMG400038165' => 'stu', 'Phvul.002G284600' => 'pvu', 'Phvul.003G258200' => 'pvu', 'Phvul.009G176500' => 'pvu', 'Potri.003G167201' => 'ptr', 'Potri.005G118400' => 'ptr', 'Potri.012G089000' => 'ptr', 'Potri.012G102800' => 'ptr', 'Potri.015G079400' => 'ptr', 'Potri.015G100900' => 'ptr', 'Pp3c14_9810' => 'ppa', 'Pp3c15_10450' => 'ppa', 'Pp3c20_19150' => 'ppa', 'Pp3c23_12740' => 'ppa', 'Pp3c23_6310' => 'ppa', 'Pp3c24_3720' => 'ppa', 'Pp3c27_2580' => 'ppa', 'Pp3c9_8990' => 'ppa', 'PRCOL_00002854' => 'pco', 'Prupe.1G221200' => 'ppe', 'Prupe.3G289000' => 'ppe', 'Prupe.5G147000' => 'ppe', 'Prupe.6G157300' => 'ppe', 'Prupe.7G163400' => 'ppe', 'Psat0s2177g0040' => 'psa', 'Psat3g174760' => 'psa', 'Psat3g192160' => 'psa', 'Psat4g058520' => 'psa', 'Psat4g096840' => 'psa', 'Psat7g037320' => 'psa', 'PSO017G1274' => 'pso', 'PSO017G5166' => 'pso', 'PSO063G4558' => 'pso', 'PSO170G4458' => 'pso', 'PSO170G5005' => 'pso', 'PSO210G6156' => 'pso', 'PSO210G6635' => 'pso', 'PSO210G7397' => 'pso', 'PSO210G7700' => 'pso', 'PSO455G0035' => 'pso', 'PSO455G0180' => 'pso', 'PSO478G4515' => 'pso', 'PSO832G1305' => 'pso', 'PSO832G3489' => 'pso', 'QL02p075247' => 'qlo', 'QL03p051148' => 'qlo', 'QL05p010313' => 'qlo', 'QL06p034627' => 'qlo', 'QL10p001889' => 'qlo', 'QL10p010846' => 'qlo', 'RcHm_v2.0_Chr1g0350621' => 'rch', 'RcHm_v2.0_Chr1g0350641' => 'rch', 'RcHm_v2.0_Chr2g0092891' => 'rch', 'RcHm_v2.0_Chr2g0100251' => 'rch', 'RcHm_v2.0_Chr2g0158661' => 'rch', 'RcHm_v2.0_Chr2g0172741' => 'rch', 'RcHm_v2.0_Chr4g0429571' => 'rch', 'RcHm_v2.0_Chr5g0042471' => 'rch', 'RcHm_v2.0_Chr7g0189451' => 'rch', 'Rhsim08G0052000' => 'rsi', 'Rhsim08G0174400' => 'rsi', 'Rhsim08G0193200' => 'rsi', 'Rhsim10G0214800' => 'rsi', 'Rhsim10G0214900' => 'rsi', 'Rhsim10G0215000' => 'rsi', 'Rhsim12G0022900' => 'rsi', 'Rhsim12G0177500' => 'rsi', 'Rhsim12G0177700' => 'rsi', 'Sabra03G0122600' => 'sbr', 'Sabra05G0097400' => 'sbr', 'Sabra12G0064100' => 'sbr', 'Sabra15G0121300' => 'sbr', 'SalBow2G0642' => 'sbo', 'SalBow5G2667' => 'sbo', 'SalBow5G4873' => 'sbo', 'SalBow8G2395' => 'sbo', 'Sc03g0003290' => 'sci', 'Sc10g0010130' => 'sci', 'Sc22g0003650' => 'sci', 'Sed0001603' => 'sed', 'Sed0004259' => 'sed', 'Sed0006789' => 'sed', 'Sed0011838' => 'sed', 'Sed0012964' => 'sed', 'Sed0016383' => 'sed', 'Sed0019010' => 'sed', 'Sed0020188' => 'sed', 'SEGI_04702' => 'sgi', 'SEGI_17231' => 'sgi', 'SEGI_18877' => 'sgi', 'SEGI_25196' => 'sgi', 'SEGI_25515' => 'sgi', 'SEGI_28445' => 'sgi', 'SEGI_37452' => 'sgi', 'SGA_v2.0_scaffold188G40336' => 'sas', 'SGA_v2.0_scaffold228G43247' => 'sas', 'SGA_v2.0_scaffold280G46853' => 'sas', 'SGA_v2.0_scaffold34G13808' => 'sas', 'SGA_v2.0_scaffold40G15576' => 'sas', 'SGA_v2.0_scaffold611G53188' => 'sas', 'SGA_v2.0_scaffold78G25461' => 'sas', 'SGA_v2.0_scaffold90G27888' => 'sas', 'SHI08601' => 'shi', 'SHI08606' => 'shi', 'SHI17117' => 'shi', 'SHI17119' => 'shi', 'SMO118G0201' => 'smo', 'SMO169G0247' => 'smo', 'SMO176G0006' => 'smo', 'SMO176G0015' => 'smo', 'SMO202G0006' => 'smo', 'SMO240G0050' => 'smo', 'SMO286G0009' => 'smo', 'SMO338G0033' => 'smo', 'SMO356G0533' => 'smo', 'SMO364G0382' => 'smo', 'SMO367G0166' => 'smo', 'SMO367G1098' => 'smo', 'Solyc01g009920.3' => 'sly', 'Solyc01g099300.3' => 'sly', 'Solyc02g084700.3' => 'sly', 'Solyc03g097520.3' => 'sly', 'Solyc06g071580.3' => 'sly', 'Solyc10g081760.3' => 'sly', 'Sopen01g005480' => 'spe', 'Sopen01g042850' => 'spe', 'Sopen02g029370' => 'spe', 'Sopen03g028280' => 'spe', 'Sopen06g027870' => 'spe', 'Sopen10g032270' => 'spe', 'Sp5g18180' => 'spa', 'Sp6g12880' => 'spa', 'Sp6g30850' => 'spa', 'Sp7g22960' => 'spa', 'Sp7g34010' => 'spa', 'SpUn1326_0010' => 'spa', 'TAR371G0242' => 'tar', 'TAR622G0638' => 'tar', 'TAR628G1548' => 'tar', 'TAR629G1079' => 'tar', 'TAR629G3413' => 'tar', 'THA.LOC104804249' => 'tha', 'THA.LOC104808315' => 'tha', 'THA.LOC104809238' => 'tha', 'THA.LOC104825484' => 'tha', 'Thecc.01G025500' => 'tca', 'Thecc.03G015800' => 'tca', 'Thecc.03G018000' => 'tca', 'Thecc.03G134800' => 'tca', 'Thecc.04G014700' => 'tca', 'Thhalv10006991m.g' => 'esa', 'Thhalv10012707m.g' => 'esa', 'Thhalv10015739m.g' => 'esa', 'Thhalv10024553m.g' => 'esa', 'Thhalv10024673m.g' => 'esa', 'Thhalv10029187m.g' => 'esa', 'TPR.G12971' => 'tpr', 'TPR.G29396' => 'tpr', 'TPR.G33376' => 'tpr', 'TPR.G35508' => 'tpr', 'TPR.G35516' => 'tpr', 'TPR.G37317' => 'tpr', 'TPR.G37389' => 'tpr', 'TPR.G37523' => 'tpr', 'TPR.G559' => 'tpr', 'TWI14G0070' => 'twi', 'TWI14G0729' => 'twi', 'TWI18G0596' => 'twi', 'TWI39G0780' => 'twi', 'TWI39G0850' => 'twi', 'TWI73G1052' => 'twi', 'unitig_52.g17485' => 'ugi', 'unitig_61.g26355' => 'ugi', 'vmacro01040' => 'vma', 'vmacro16731' => 'vma', 'vmacro18270' => 'vma', 'vmacro19142' => 'vma', 'vmacro19407' => 'vma', 'vmacro19408' => 'vma', 'vmacro21899' => 'vma', 'vmacro21900' => 'vma', 'vmacro21901' => 'vma', 'VMungo0251G0490' => 'vmu', 'VMungo0251G1748' => 'vmu', 'VMungo1309G0421' => 'vmu', 'Zm00001eb086500' => 'zma', 'Zm00001eb150680' => 'zma', 'Zm00001eb162330' => 'zma', 'Zm00001eb203130' => 'zma', 'Zm00001eb369480' => 'zma', 'Zm00001eb382340' => 'zma', 'Zm00001eb416360' => 'zma' ), 'gf_id' => 'HOM05D000902', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000902' ), 'data_identifier' => 'HOM05D000902', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000902', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '663', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02470' => 'bna', 'A01p16260' => 'bna', 'A02p01680' => 'bna', 'A03p16600' => 'bna', 'A03p55660' => 'bna', 'A03p64160' => 'bna', 'A03p64170' => 'bna', 'A08p31900' => 'bna', 'A09p59530' => 'bna', 'A10p08230' => 'bna', 'A10p25090' => 'bna', 'Aa31LG3G7100' => 'aar', 'Aa31LG3G7110' => 'aar', 'Aa31LG6G13160' => 'aar', 'Aa31LG7G10770' => 'aar', 'Aa31LG7G3830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2723' => 'aag', 'Actinidia08045' => 'ach', 'Actinidia08888' => 'ach', 'Actinidia18333' => 'ach', 'Actinidia19334' => 'ach', 'Actinidia25552' => 'ach', 'Actinidia26089' => 'ach', 'Actinidia30615' => 'ach', 'Actinidia30616' => 'ach', 'Actinidia33083' => 'ach', 'Actinidia35762' => 'ach', 'Ah.02g110620' => 'amhyb', 'Ah.11g046390' => 'amhyb', 'AL1G31670' => 'aly', 'AL6G23730' => 'aly', 'AL7G14740' => 'aly', 'AL7G14750' => 'aly', 'AL7G14760' => 'aly', 'AL7G28220' => 'aly', 'AL8G24940' => 'aly', 'Aqoxy3G01665' => 'aox', 'Aqoxy3G02853' => 'aox', 'Aqoxy5G01513' => 'aox', 'Aqoxy5G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8SKA4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ75LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKDA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0LJZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7REX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZP4YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWX7I5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2QKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS0L9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPCD8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q161UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC7XCF' => 'arhy', 'AT1G19100' => 'ath', 'AT4G24970' => 'ath', 'AT4G36270' => 'ath', 'AT4G36280' => 'ath', 'AT4G36290' => 'ath', 'AT5G13130' => 'ath', 'AT5G50780' => 'ath', 'ATR0582G266' => 'atr', 'ATR0661G195' => 'atr', 'ATR1152G031' => 'atr', 'Atru.chr11.2382' => 'acertr', 'Atru.chr12.2337' => 'acertr', 'Atru.chr3.744' => 'acertr', 'Atru.chr6.1870' => 'acertr', 'Atru.chr9.2515' => 'acertr', 'AUR62004120' => 'cqu', 'AUR62005667' => 'cqu', 'AUR62007634' => 'cqu', 'AUR62008186' => 'cqu', 'AUR62008187' => 'cqu', 'AUR62008188' => 'cqu', 'AUR62027954' => 'cqu', 'AUR62028766' => 'cqu', 'AUR62028767' => 'cqu', 'AUR62028768' => 'cqu', 'AUR62028886' => 'cqu', 'AUR62029563' => 'cqu', 'AUR62038832' => 'cqu', 'BcaB01g04149' => 'bca', 'BcaB03g12940' => 'bca', 'BcaB03g13090' => 'bca', 'BcaB03g14466' => 'bca', 'BcaB05g24035' => 'bca', 'BcaC01g06050' => 'bca', 'BcaC04g19148' => 'bca', 'BcaC04g20761' => 'bca', 'BcaC06g32845' => 'bca', 'BcaC07g41274' => 'bca', 'BcaC09g50827' => 'bca', 'BcaNung00741' => 'bca', 'BcaNung00742' => 'bca', 'BcaNung01859' => 'bca', 'BcaNung03985' => 'bca', 'BcaNung03989' => 'bca', 'BcaNung05661' => 'bca', 'BolC1t00257H' => 'bol', 'BolC1t01956H' => 'bol', 'BolC2t06534H' => 'bol', 'BolC3t14334H' => 'bol', 'BolC5t30451H' => 'bol', 'BolC7t45880H' => 'bol', 'BolC7t46586H' => 'bol', 'BolC8t49301H' => 'bol', 'BolC8t51837H' => 'bol', 'BolC9t56822H' => 'bol', 'BolC9t59235H' => 'bol', 'BraA01t00234Z' => 'bra', 'BraA01t01563Z' => 'bra', 'BraA02t05147Z' => 'bra', 'BraA03t10947Z' => 'bra', 'BraA03t14633Z' => 'bra', 'BraA08t35112Z' => 'bra', 'BraA09t41330Z' => 'bra', 'BraA10t44570Z' => 'bra', 'C01p02670' => 'bna', 'C01p20260' => 'bna', 'C02p05890' => 'bna', 'C03p19530' => 'bna', 'C05p17470' => 'bna', 'C07p53900' => 'bna', 'C07p61630' => 'bna', 'C08p16800' => 'bna', 'C08p42810' => 'bna', 'C09p39480' => 'bna', 'C09p63980' => 'bna', 'CAN.G1001.7' => 'can', 'CAN.G1034.55' => 'can', 'CAN.G143.7' => 'can', 'CAN.G3340.1' => 'can', 'CAN.G358.19' => 'can', 'CAN.G373.2' => 'can', 'CAN.G674.16' => 'can', 'CAN.G674.17' => 'can', 'CAN.G674.18' => 'can', 'CAN.G732.2' => 'can', 'CAN.G732.3' => 'can', 'CAN.G993.39' => 'can', 'CANSAT01G2052' => 'cansat', 'CANSAT80G0070' => 'cansat', 'CANSAT80G0483' => 'cansat', 'CANSAT80G0625' => 'cansat', 'CARHR019690' => 'chi', 'CARHR080280' => 'chi', 'CARHR152750' => 'chi', 'CARHR152760' => 'chi', 'CARHR152770' => 'chi', 'CARHR200340' => 'chi', 'CARHR232370' => 'chi', 'CARHR244670' => 'chi', 'CARHR244680' => 'chi', 'CARHR257520' => 'chi', 'Carub.0001s1872' => 'cru', 'Carub.0006s1130' => 'cru', 'Carub.0007s0396' => 'cru', 'Carub.0007s0397' => 'cru', 'Carub.0007s1608' => 'cru', 'Carub.0008s1068' => 'cru', 'Carub.0008s1077' => 'cru', 'Ca_16158_v3' => 'car', 'Ca_17571_v3' => 'car', 'Ca_21936_v3' => 'car', 'Ca_22350_v3' => 'car', 'CBR_g22445' => 'cbr', 'CBR_g26290' => 'cbr', 'Cc04_g09610' => 'ccan', 'Cc04_g12280' => 'ccan', 'Cc07_g10230' => 'ccan', 'CDE02G0093' => 'cde', 'CDE02G0701' => 'cde', 'CDE04G1050' => 'cde', 'CDE05G1833' => 'cde', 'CDE05G3058' => 'cde', 'CDE05G3380' => 'cde', 'CDE06G0536' => 'cde', 'Cfa006923' => 'cfa', 'Cfa009402' => 'cfa', 'Cfa018751' => 'cfa', 'Cfa019164' => 'cfa', 'Cfa022935' => 'cfa', 'Ciclev10019081m.g' => 'ccl', 'Ciclev10025076m.g' => 'ccl', 'Ciclev10030712m.g' => 'ccl', 'Ciclev10033760m.g' => 'ccl', 'CiPaw.05G105600' => 'cil', 'CiPaw.08G136700' => 'cil', 'CiPaw.11G003900' => 'cil', 'CiPaw.11G023700' => 'cil', 'CiPaw.12G003700' => 'cil', 'ClCG06G017100' => 'cla', 'ClCG06G018110' => 'cla', 'ClCG07G008800' => 'cla', 'ClCG07G015330' => 'cla', 'COL.COLO4_13698' => 'col', 'COL.COLO4_16659' => 'col', 'COL.COLO4_21986' => 'col', 'COL.COLO4_24049' => 'col', 'COL.COLO4_29061' => 'col', 'COL.COLO4_29075' => 'col', 'COL.COLO4_30094' => 'col', 'Cpa.g.c33689' => 'cpa', 'Cpa.g.sc108.39' => 'cpa', 'Cpa.g.sc108.41' => 'cpa', 'Cpa.g.sc1163.1' => 'cpa', 'Cpa.g.sc4.155' => 'cpa', 'Cpa.g.sc6.194' => 'cpa', 'CsaV3_1G000340' => 'csa', 'CsaV3_1G001400' => 'csa', 'CsaV3_4G002220' => 'csa', 'CsaV3_4G005370' => 'csa', 'CSS0007487' => 'camsi', 'CSS0008066' => 'camsi', 'CSS0009120' => 'camsi', 'CSS0015512' => 'camsi', 'CSS0022409' => 'camsi', 'CSS0025358' => 'camsi', 'CSS0044547' => 'camsi', 'DCAR_013057' => 'dca', 'DCAR_015058' => 'dca', 'DCAR_016027' => 'dca', 'DCAR_017327' => 'dca', 'DCAR_020743' => 'dca', 'DCAR_026157' => 'dca', 'DCAR_032339' => 'dca', 'DCAR_032340' => 'dca', 'Dinv11200' => 'din', 'Dinv11201' => 'din', 'Dinv20631' => 'din', 'Dinv23182' => 'din', 'Dinv33466' => 'din', 'Dinv33583' => 'din', 'Dinv38565' => 'din', 'Duzib068G0200' => 'dzi', 'Duzib147G0132' => 'dzi', 'Duzib147G0635' => 'dzi', 'Duzib205G1670' => 'dzi', 'Duzib251G0606' => 'dzi', 'ECA232G3336' => 'eca', 'ECA232G3763' => 'eca', 'ECA232G4845' => 'eca', 'ECA234G1607' => 'eca', 'ECA246G0932' => 'eca', 'ECA247G0781' => 'eca', 'ECA247G1932' => 'eca', 'ECA247G2079' => 'eca', 'ECA247G3338' => 'eca', 'ECA247G4115' => 'eca', 'EL10Ac3g06552' => 'bvu', 'EL10Ac5g10721' => 'bvu', 'EL10Ac5g10722' => 'bvu', 'EL10Ac5g10723' => 'bvu', 'EL10Ac5g11361' => 'bvu', 'EL10Ac6g13553' => 'bvu', 'EL10As8g23872' => 'bvu', 'Eucgr.B00250' => 'egr', 'Eucgr.B00251' => 'egr', 'Eucgr.B03533' => 'egr', 'Eucgr.I02381' => 'egr', 'Eucgr.K02700' => 'egr', 'FAN02G0174' => 'fan', 'FAN02G3146' => 'fan', 'FAN04G1672' => 'fan', 'FAN04G2273' => 'fan', 'FAN05G2791' => 'fan', 'FAN05G4035' => 'fan', 'FAN07G0834' => 'fan', 'FAN08G1198' => 'fan', 'FAN09G4182' => 'fan', 'FAN12G0496' => 'fan', 'FAN13G1027' => 'fan', 'FAN13G2951' => 'fan', 'FAN14G0705' => 'fan', 'FAN14G0720' => 'fan', 'FAN17G0201' => 'fan', 'FAN17G2665' => 'fan', 'FAN18G1456' => 'fan', 'FAN18G1525' => 'fan', 'FAN18G3500' => 'fan', 'FAN28G2670' => 'fan', 'FvH4_1g12391' => 'fve', 'FvH4_4g23220' => 'fve', 'FvH4_5g08810' => 'fve', 'FvH4_5g28960' => 'fve', 'FvH4_6g42820' => 'fve', 'FvH4_6g51110' => 'fve', 'Glyma.02G051802' => 'gma', 'Glyma.04G185300' => 'gma', 'Glyma.05G202900' => 'gma', 'Glyma.08G010300' => 'gma', 'Glyma.16G131900' => 'gma', 'Glyma.17G087900' => 'gma', 'Gohir.A07G048600' => 'ghi', 'Gohir.A11G179000' => 'ghi', 'Gohir.A12G140900' => 'ghi', 'Gohir.A12G140950' => 'ghi', 'Gohir.A12G191700' => 'ghi', 'Gohir.A13G086300' => 'ghi', 'Gohir.D07G052900' => 'ghi', 'Gohir.D11G186600' => 'ghi', 'Gohir.D12G145575' => 'ghi', 'Gohir.D12G145650' => 'ghi', 'Gohir.D12G145725' => 'ghi', 'Gohir.D12G194050' => 'ghi', 'Gohir.D13G091800' => 'ghi', 'Gorai.001G055900' => 'gra', 'Gorai.007G198400' => 'gra', 'Gorai.008G157000' => 'gra', 'Gorai.008G157100' => 'gra', 'Gorai.008G208700' => 'gra', 'Gorai.010G138700' => 'gra', 'GSVIVG01000977001' => 'vvi', 'GSVIVG01007708001' => 'vvi', 'GSVIVG01008587001' => 'vvi', 'GSVIVG01018849001' => 'vvi', 'GSVIVG01032432001' => 'vvi', 'HanXRQChr02g0034131' => 'han', 'HanXRQChr02g0035981' => 'han', 'HanXRQChr02g0035991' => 'han', 'HanXRQChr05g0155611' => 'han', 'HanXRQChr05g0155621' => 'han', 'HanXRQChr08g0236501' => 'han', 'HanXRQChr09g0261321' => 'han', 'HanXRQChr09g0272081' => 'han', 'HanXRQChr10g0310741' => 'han', 'HanXRQChr11g0325591' => 'han', 'HanXRQChr12g0385691' => 'han', 'HanXRQChr13g0387801' => 'han', 'HanXRQChr15g0463011' => 'han', 'Haze_03826' => 'cav', 'Haze_03827' => 'cav', 'Haze_07183' => 'cav', 'Haze_07537' => 'cav', 'Haze_07539' => 'cav', 'Haze_12461' => 'cav', 'Haze_16115' => 'cav', 'Haze_16808' => 'cav', 'Haze_18531' => 'cav', 'Hma1.2p1_0046F.1_g026700' => 'hma', 'Hma1.2p1_0046F.1_g026710' => 'hma', 'Hma1.2p1_0168F.1_g074340' => 'hma', 'Hma1.2p1_0266F.1_g107030' => 'hma', 'Hma1.2p1_0266F.1_g107060' => 'hma', 'Hma1.2p1_0275F.1_g110510' => 'hma', 'Hma1.2p1_0592F.1_g185490' => 'hma', 'Hma1.2p1_0592F.1_g185500' => 'hma', 'Hma1.2p1_0592F.1_g185510' => 'hma', 'Hma1.2p1_0592F.1_g185520' => 'hma', 'Hma1.2p1_0592F.1_g185530' => 'hma', 'Hma1.2p1_0818F.1_g223450' => 'hma', 'HPP92_009708' => 'vpl', 'HPP92_009793' => 'vpl', 'HPP92_009796' => 'vpl', 'HPP92_009797' => 'vpl', 'HPP92_014940' => 'vpl', 'HPP92_014988' => 'vpl', 'Hund02463' => 'sun', 'Hund02760' => 'sun', 'Hund05071' => 'sun', 'Hund10108' => 'sun', 'Hund11204' => 'sun', 'Hund14016' => 'sun', 'Hund16464' => 'sun', 'Lalb_Chr09g0333391' => 'lal', 'Lalb_Chr11g0070461' => 'lal', 'Lalb_Chr12g0201671' => 'lal', 'Lalb_Chr13g0297161' => 'lal', 'Lj1g0002823' => 'lja', 'Lj3C1074T6' => 'lonja', 'Lj4A212T28' => 'lonja', 'Lj4g0005516' => 'lja', 'Lj4g0013705' => 'lja', 'Lj4g0027865' => 'lja', 'Lj5C92G16' => 'lonja', 'Lj5C92T12' => 'lonja', 'Lj7C596T3' => 'lonja', 'Lj9A446G59' => 'lonja', 'Lj9A482G21' => 'lonja', 'Lsat_1_v5_gn_1_28261' => 'lsa', 'Lsat_1_v5_gn_1_28281' => 'lsa', 'Lsat_1_v5_gn_1_32721' => 'lsa', 'Lsat_1_v5_gn_4_151760' => 'lsa', 'Lsat_1_v5_gn_4_2120' => 'lsa', 'Lsat_1_v5_gn_4_75761' => 'lsa', 'Lsat_1_v5_gn_5_10920' => 'lsa', 'Manes.02G099900' => 'mes', 'Manes.11G096200' => 'mes', 'Manes.12G007200' => 'mes', 'Manes.14G048300' => 'mes', 'Manes.17G114700' => 'mes', 'Mapoly0002s0070' => 'mpo', 'Mapoly0029s0099' => 'mpo', 'MBI07_g24742_MAGBIO' => 'mbi', 'MBI10_g27988_MAGBIO' => 'mbi', 'MBI11_g13057_MAGBIO' => 'mbi', 'MD02G1137200' => 'mdo', 'MD06G1137200' => 'mdo', 'MD07G1122300' => 'mdo', 'MD09G1078200' => 'mdo', 'MD13G1123700' => 'mdo', 'MD14G1151900' => 'mdo', 'MD17G1030900' => 'mdo', 'MD17G1068200' => 'mdo', 'MD17G1068600' => 'mdo', 'Medtr3g077540' => 'mtr', 'Medtr4g105530' => 'mtr', 'Medtr8g076580' => 'mtr', 'Medtr8g076590' => 'mtr', 'Medtr8g096410' => 'mtr', 'MELO3C016411.2' => 'cme', 'MELO3C017780.2' => 'cme', 'MELO3C022560.2' => 'cme', 'MELO3C026187.2' => 'cme', 'MELO3C026286.2' => 'cme', 'MELO3C032854.2' => 'cme', 'Migut.H02495' => 'egut', 'Migut.I00561' => 'egut', 'Migut.K01015' => 'egut', 'Migut.K01016' => 'egut', 'Migut.L00743' => 'egut', 'Migut.L00744' => 'egut', 'Migut.L00746' => 'egut', 'Migut.L00798' => 'egut', 'Migut.L00799' => 'egut', 'Migut.N02096' => 'egut', 'MSTRG.11259' => 'ama', 'MSTRG.23142' => 'ama', 'MSTRG.2499' => 'ama', 'Nitab4.5_0000003g0730' => 'nta', 'Nitab4.5_0000137g0020' => 'nta', 'Nitab4.5_0000721g0210' => 'nta', 'Nitab4.5_0000723g0050' => 'nta', 'Nitab4.5_0000913g0070' => 'nta', 'Nitab4.5_0001332g0040' => 'nta', 'Nitab4.5_0001771g0050' => 'nta', 'Nitab4.5_0001918g0050' => 'nta', 'Nitab4.5_0002686g0030' => 'nta', 'Nitab4.5_0003156g0020' => 'nta', 'Nitab4.5_0003383g0040' => 'nta', 'Nitab4.5_0003918g0010' => 'nta', 'Nitab4.5_0006760g0010' => 'nta', 'Nn1g05981' => 'nnu', 'Nn1g06288' => 'nnu', 'Nn3g16371' => 'nnu', 'Nn3g16786' => 'nnu', 'Nn4g22232' => 'nnu', 'Oeu005144.1' => 'oeu', 'Oeu005145.1' => 'oeu', 'Oeu011348.1' => 'oeu', 'Oeu016415.1' => 'oeu', 'Oeu023501.1' => 'oeu', 'Oeu044473.1' => 'oeu', 'Oeu048892.2' => 'oeu', 'Os01g0549200' => 'osa', 'Os02g0469300' => 'osa', 'Os04g0311100' => 'osa', 'Os06g0474900' => 'osa', 'Os10g0181700' => 'osa', 'Os11g0454800' => 'osa', 'Peaxi162Scf00037g00714' => 'pax', 'Peaxi162Scf00084g01217' => 'pax', 'Peaxi162Scf00257g00217' => 'pax', 'Peaxi162Scf00516g00215' => 'pax', 'Peaxi162Scf00689g00123' => 'pax', 'PGR044G2719' => 'pgr', 'PGR083G1360' => 'pgr', 'PGR102G2849' => 'pgr', 'PGR119G2534' => 'pgr', 'PGSC0003DMG400003538' => 'stu', 'PGSC0003DMG400028138' => 'stu', 'PGSC0003DMG400031732' => 'stu', 'PGSC0003DMG400038165' => 'stu', 'Phvul.002G284600' => 'pvu', 'Phvul.003G258200' => 'pvu', 'Phvul.009G176500' => 'pvu', 'Potri.003G167201' => 'ptr', 'Potri.005G118400' => 'ptr', 'Potri.012G089000' => 'ptr', 'Potri.012G102800' => 'ptr', 'Potri.015G079400' => 'ptr', 'Potri.015G100900' => 'ptr', 'Pp3c14_9810' => 'ppa', 'Pp3c15_10450' => 'ppa', 'Pp3c20_19150' => 'ppa', 'Pp3c23_12740' => 'ppa', 'Pp3c23_6310' => 'ppa', 'Pp3c24_3720' => 'ppa', 'Pp3c27_2580' => 'ppa', 'Pp3c9_8990' => 'ppa', 'PRCOL_00002854' => 'pco', 'Prupe.1G221200' => 'ppe', 'Prupe.3G289000' => 'ppe', 'Prupe.5G147000' => 'ppe', 'Prupe.6G157300' => 'ppe', 'Prupe.7G163400' => 'ppe', 'Psat0s2177g0040' => 'psa', 'Psat3g174760' => 'psa', 'Psat3g192160' => 'psa', 'Psat4g058520' => 'psa', 'Psat4g096840' => 'psa', 'Psat7g037320' => 'psa', 'PSO017G1274' => 'pso', 'PSO017G5166' => 'pso', 'PSO063G4558' => 'pso', 'PSO170G4458' => 'pso', 'PSO170G5005' => 'pso', 'PSO210G6156' => 'pso', 'PSO210G6635' => 'pso', 'PSO210G7397' => 'pso', 'PSO210G7700' => 'pso', 'PSO455G0035' => 'pso', 'PSO455G0180' => 'pso', 'PSO478G4515' => 'pso', 'PSO832G1305' => 'pso', 'PSO832G3489' => 'pso', 'QL02p075247' => 'qlo', 'QL03p051148' => 'qlo', 'QL05p010313' => 'qlo', 'QL06p034627' => 'qlo', 'QL10p001889' => 'qlo', 'QL10p010846' => 'qlo', 'RcHm_v2.0_Chr1g0350621' => 'rch', 'RcHm_v2.0_Chr1g0350641' => 'rch', 'RcHm_v2.0_Chr2g0092891' => 'rch', 'RcHm_v2.0_Chr2g0100251' => 'rch', 'RcHm_v2.0_Chr2g0158661' => 'rch', 'RcHm_v2.0_Chr2g0172741' => 'rch', 'RcHm_v2.0_Chr4g0429571' => 'rch', 'RcHm_v2.0_Chr5g0042471' => 'rch', 'RcHm_v2.0_Chr7g0189451' => 'rch', 'Rhsim08G0052000' => 'rsi', 'Rhsim08G0174400' => 'rsi', 'Rhsim08G0193200' => 'rsi', 'Rhsim10G0214800' => 'rsi', 'Rhsim10G0214900' => 'rsi', 'Rhsim10G0215000' => 'rsi', 'Rhsim12G0022900' => 'rsi', 'Rhsim12G0177500' => 'rsi', 'Rhsim12G0177700' => 'rsi', 'Sabra03G0122600' => 'sbr', 'Sabra05G0097400' => 'sbr', 'Sabra12G0064100' => 'sbr', 'Sabra15G0121300' => 'sbr', 'SalBow2G0642' => 'sbo', 'SalBow5G2667' => 'sbo', 'SalBow5G4873' => 'sbo', 'SalBow8G2395' => 'sbo', 'Sc03g0003290' => 'sci', 'Sc10g0010130' => 'sci', 'Sc22g0003650' => 'sci', 'Sed0001603' => 'sed', 'Sed0004259' => 'sed', 'Sed0006789' => 'sed', 'Sed0011838' => 'sed', 'Sed0012964' => 'sed', 'Sed0016383' => 'sed', 'Sed0019010' => 'sed', 'Sed0020188' => 'sed', 'SEGI_04702' => 'sgi', 'SEGI_17231' => 'sgi', 'SEGI_18877' => 'sgi', 'SEGI_25196' => 'sgi', 'SEGI_25515' => 'sgi', 'SEGI_28445' => 'sgi', 'SEGI_37452' => 'sgi', 'SGA_v2.0_scaffold188G40336' => 'sas', 'SGA_v2.0_scaffold228G43247' => 'sas', 'SGA_v2.0_scaffold280G46853' => 'sas', 'SGA_v2.0_scaffold34G13808' => 'sas', 'SGA_v2.0_scaffold40G15576' => 'sas', 'SGA_v2.0_scaffold611G53188' => 'sas', 'SGA_v2.0_scaffold78G25461' => 'sas', 'SGA_v2.0_scaffold90G27888' => 'sas', 'SHI08601' => 'shi', 'SHI08606' => 'shi', 'SHI17117' => 'shi', 'SHI17119' => 'shi', 'SMO118G0201' => 'smo', 'SMO169G0247' => 'smo', 'SMO176G0006' => 'smo', 'SMO176G0015' => 'smo', 'SMO202G0006' => 'smo', 'SMO240G0050' => 'smo', 'SMO286G0009' => 'smo', 'SMO338G0033' => 'smo', 'SMO356G0533' => 'smo', 'SMO364G0382' => 'smo', 'SMO367G0166' => 'smo', 'SMO367G1098' => 'smo', 'Solyc01g009920.3' => 'sly', 'Solyc01g099300.3' => 'sly', 'Solyc02g084700.3' => 'sly', 'Solyc03g097520.3' => 'sly', 'Solyc06g071580.3' => 'sly', 'Solyc10g081760.3' => 'sly', 'Sopen01g005480' => 'spe', 'Sopen01g042850' => 'spe', 'Sopen02g029370' => 'spe', 'Sopen03g028280' => 'spe', 'Sopen06g027870' => 'spe', 'Sopen10g032270' => 'spe', 'Sp5g18180' => 'spa', 'Sp6g12880' => 'spa', 'Sp6g30850' => 'spa', 'Sp7g22960' => 'spa', 'Sp7g34010' => 'spa', 'SpUn1326_0010' => 'spa', 'TAR371G0242' => 'tar', 'TAR622G0638' => 'tar', 'TAR628G1548' => 'tar', 'TAR629G1079' => 'tar', 'TAR629G3413' => 'tar', 'THA.LOC104804249' => 'tha', 'THA.LOC104808315' => 'tha', 'THA.LOC104809238' => 'tha', 'THA.LOC104825484' => 'tha', 'Thecc.01G025500' => 'tca', 'Thecc.03G015800' => 'tca', 'Thecc.03G018000' => 'tca', 'Thecc.03G134800' => 'tca', 'Thecc.04G014700' => 'tca', 'Thhalv10006991m.g' => 'esa', 'Thhalv10012707m.g' => 'esa', 'Thhalv10015739m.g' => 'esa', 'Thhalv10024553m.g' => 'esa', 'Thhalv10024673m.g' => 'esa', 'Thhalv10029187m.g' => 'esa', 'TPR.G12971' => 'tpr', 'TPR.G29396' => 'tpr', 'TPR.G33376' => 'tpr', 'TPR.G35508' => 'tpr', 'TPR.G35516' => 'tpr', 'TPR.G37317' => 'tpr', 'TPR.G37389' => 'tpr', 'TPR.G37523' => 'tpr', 'TPR.G559' => 'tpr', 'TWI14G0070' => 'twi', 'TWI14G0729' => 'twi', 'TWI18G0596' => 'twi', 'TWI39G0780' => 'twi', 'TWI39G0850' => 'twi', 'TWI73G1052' => 'twi', 'unitig_52.g17485' => 'ugi', 'unitig_61.g26355' => 'ugi', 'vmacro01040' => 'vma', 'vmacro16731' => 'vma', 'vmacro18270' => 'vma', 'vmacro19142' => 'vma', 'vmacro19407' => 'vma', 'vmacro19408' => 'vma', 'vmacro21899' => 'vma', 'vmacro21900' => 'vma', 'vmacro21901' => 'vma', 'VMungo0251G0490' => 'vmu', 'VMungo0251G1748' => 'vmu', 'VMungo1309G0421' => 'vmu', 'Zm00001eb086500' => 'zma', 'Zm00001eb150680' => 'zma', 'Zm00001eb162330' => 'zma', 'Zm00001eb203130' => 'zma', 'Zm00001eb369480' => 'zma', 'Zm00001eb382340' => 'zma', 'Zm00001eb416360' => 'zma' ) $gf_id = 'HOM05D000902' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000902' ) $data_identifier = 'HOM05D000902' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 13, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 10, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 6, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 9, 'hma' => (int) 12, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 4, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 6, 'ppa' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 6, 'rch' => (int) 9, 'rsi' => (int) 9, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 12, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 3, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416360' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000902', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '663', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02470' => 'bna', 'A01p16260' => 'bna', 'A02p01680' => 'bna', 'A03p16600' => 'bna', 'A03p55660' => 'bna', 'A03p64160' => 'bna', 'A03p64170' => 'bna', 'A08p31900' => 'bna', 'A09p59530' => 'bna', 'A10p08230' => 'bna', 'A10p25090' => 'bna', 'Aa31LG3G7100' => 'aar', 'Aa31LG3G7110' => 'aar', 'Aa31LG6G13160' => 'aar', 'Aa31LG7G10770' => 'aar', 'Aa31LG7G3830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2723' => 'aag', 'Actinidia08045' => 'ach', 'Actinidia08888' => 'ach', 'Actinidia18333' => 'ach', 'Actinidia19334' => 'ach', 'Actinidia25552' => 'ach', 'Actinidia26089' => 'ach', 'Actinidia30615' => 'ach', 'Actinidia30616' => 'ach', 'Actinidia33083' => 'ach', 'Actinidia35762' => 'ach', 'Ah.02g110620' => 'amhyb', 'Ah.11g046390' => 'amhyb', 'AL1G31670' => 'aly', 'AL6G23730' => 'aly', 'AL7G14740' => 'aly', 'AL7G14750' => 'aly', 'AL7G14760' => 'aly', 'AL7G28220' => 'aly', 'AL8G24940' => 'aly', 'Aqoxy3G01665' => 'aox', 'Aqoxy3G02853' => 'aox', 'Aqoxy5G01513' => 'aox', 'Aqoxy5G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8SKA4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ75LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKDA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0LJZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7REX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZP4YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWX7I5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2QKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS0L9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPCD8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q161UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC7XCF' => 'arhy', 'AT1G19100' => 'ath', 'AT4G24970' => 'ath', 'AT4G36270' => 'ath', 'AT4G36280' => 'ath', 'AT4G36290' => 'ath', 'AT5G13130' => 'ath', 'AT5G50780' => 'ath', 'ATR0582G266' => 'atr', 'ATR0661G195' => 'atr', 'ATR1152G031' => 'atr', 'Atru.chr11.2382' => 'acertr', 'Atru.chr12.2337' => 'acertr', 'Atru.chr3.744' => 'acertr', 'Atru.chr6.1870' => 'acertr', 'Atru.chr9.2515' => 'acertr', 'AUR62004120' => 'cqu', 'AUR62005667' => 'cqu', 'AUR62007634' => 'cqu', 'AUR62008186' => 'cqu', 'AUR62008187' => 'cqu', 'AUR62008188' => 'cqu', 'AUR62027954' => 'cqu', 'AUR62028766' => 'cqu', 'AUR62028767' => 'cqu', 'AUR62028768' => 'cqu', 'AUR62028886' => 'cqu', 'AUR62029563' => 'cqu', 'AUR62038832' => 'cqu', 'BcaB01g04149' => 'bca', 'BcaB03g12940' => 'bca', 'BcaB03g13090' => 'bca', 'BcaB03g14466' => 'bca', 'BcaB05g24035' => 'bca', 'BcaC01g06050' => 'bca', 'BcaC04g19148' => 'bca', 'BcaC04g20761' => 'bca', 'BcaC06g32845' => 'bca', 'BcaC07g41274' => 'bca', 'BcaC09g50827' => 'bca', 'BcaNung00741' => 'bca', 'BcaNung00742' => 'bca', 'BcaNung01859' => 'bca', 'BcaNung03985' => 'bca', 'BcaNung03989' => 'bca', 'BcaNung05661' => 'bca', 'BolC1t00257H' => 'bol', 'BolC1t01956H' => 'bol', 'BolC2t06534H' => 'bol', 'BolC3t14334H' => 'bol', 'BolC5t30451H' => 'bol', 'BolC7t45880H' => 'bol', 'BolC7t46586H' => 'bol', 'BolC8t49301H' => 'bol', 'BolC8t51837H' => 'bol', 'BolC9t56822H' => 'bol', 'BolC9t59235H' => 'bol', 'BraA01t00234Z' => 'bra', 'BraA01t01563Z' => 'bra', 'BraA02t05147Z' => 'bra', 'BraA03t10947Z' => 'bra', 'BraA03t14633Z' => 'bra', 'BraA08t35112Z' => 'bra', 'BraA09t41330Z' => 'bra', 'BraA10t44570Z' => 'bra', 'C01p02670' => 'bna', 'C01p20260' => 'bna', 'C02p05890' => 'bna', 'C03p19530' => 'bna', 'C05p17470' => 'bna', 'C07p53900' => 'bna', 'C07p61630' => 'bna', 'C08p16800' => 'bna', 'C08p42810' => 'bna', 'C09p39480' => 'bna', 'C09p63980' => 'bna', 'CAN.G1001.7' => 'can', 'CAN.G1034.55' => 'can', 'CAN.G143.7' => 'can', 'CAN.G3340.1' => 'can', 'CAN.G358.19' => 'can', 'CAN.G373.2' => 'can', 'CAN.G674.16' => 'can', 'CAN.G674.17' => 'can', 'CAN.G674.18' => 'can', 'CAN.G732.2' => 'can', 'CAN.G732.3' => 'can', 'CAN.G993.39' => 'can', 'CANSAT01G2052' => 'cansat', 'CANSAT80G0070' => 'cansat', 'CANSAT80G0483' => 'cansat', 'CANSAT80G0625' => 'cansat', 'CARHR019690' => 'chi', 'CARHR080280' => 'chi', 'CARHR152750' => 'chi', 'CARHR152760' => 'chi', 'CARHR152770' => 'chi', 'CARHR200340' => 'chi', 'CARHR232370' => 'chi', 'CARHR244670' => 'chi', 'CARHR244680' => 'chi', 'CARHR257520' => 'chi', 'Carub.0001s1872' => 'cru', 'Carub.0006s1130' => 'cru', 'Carub.0007s0396' => 'cru', 'Carub.0007s0397' => 'cru', 'Carub.0007s1608' => 'cru', 'Carub.0008s1068' => 'cru', 'Carub.0008s1077' => 'cru', 'Ca_16158_v3' => 'car', 'Ca_17571_v3' => 'car', 'Ca_21936_v3' => 'car', 'Ca_22350_v3' => 'car', 'CBR_g22445' => 'cbr', 'CBR_g26290' => 'cbr', 'Cc04_g09610' => 'ccan', 'Cc04_g12280' => 'ccan', 'Cc07_g10230' => 'ccan', 'CDE02G0093' => 'cde', 'CDE02G0701' => 'cde', 'CDE04G1050' => 'cde', 'CDE05G1833' => 'cde', 'CDE05G3058' => 'cde', 'CDE05G3380' => 'cde', 'CDE06G0536' => 'cde', 'Cfa006923' => 'cfa', 'Cfa009402' => 'cfa', 'Cfa018751' => 'cfa', 'Cfa019164' => 'cfa', 'Cfa022935' => 'cfa', 'Ciclev10019081m.g' => 'ccl', 'Ciclev10025076m.g' => 'ccl', 'Ciclev10030712m.g' => 'ccl', 'Ciclev10033760m.g' => 'ccl', 'CiPaw.05G105600' => 'cil', 'CiPaw.08G136700' => 'cil', 'CiPaw.11G003900' => 'cil', 'CiPaw.11G023700' => 'cil', 'CiPaw.12G003700' => 'cil', 'ClCG06G017100' => 'cla', 'ClCG06G018110' => 'cla', 'ClCG07G008800' => 'cla', 'ClCG07G015330' => 'cla', 'COL.COLO4_13698' => 'col', 'COL.COLO4_16659' => 'col', 'COL.COLO4_21986' => 'col', 'COL.COLO4_24049' => 'col', 'COL.COLO4_29061' => 'col', 'COL.COLO4_29075' => 'col', 'COL.COLO4_30094' => 'col', 'Cpa.g.c33689' => 'cpa', 'Cpa.g.sc108.39' => 'cpa', 'Cpa.g.sc108.41' => 'cpa', 'Cpa.g.sc1163.1' => 'cpa', 'Cpa.g.sc4.155' => 'cpa', 'Cpa.g.sc6.194' => 'cpa', 'CsaV3_1G000340' => 'csa', 'CsaV3_1G001400' => 'csa', 'CsaV3_4G002220' => 'csa', 'CsaV3_4G005370' => 'csa', 'CSS0007487' => 'camsi', 'CSS0008066' => 'camsi', 'CSS0009120' => 'camsi', 'CSS0015512' => 'camsi', 'CSS0022409' => 'camsi', 'CSS0025358' => 'camsi', 'CSS0044547' => 'camsi', 'DCAR_013057' => 'dca', 'DCAR_015058' => 'dca', 'DCAR_016027' => 'dca', 'DCAR_017327' => 'dca', 'DCAR_020743' => 'dca', 'DCAR_026157' => 'dca', 'DCAR_032339' => 'dca', 'DCAR_032340' => 'dca', 'Dinv11200' => 'din', 'Dinv11201' => 'din', 'Dinv20631' => 'din', 'Dinv23182' => 'din', 'Dinv33466' => 'din', 'Dinv33583' => 'din', 'Dinv38565' => 'din', 'Duzib068G0200' => 'dzi', 'Duzib147G0132' => 'dzi', 'Duzib147G0635' => 'dzi', 'Duzib205G1670' => 'dzi', 'Duzib251G0606' => 'dzi', 'ECA232G3336' => 'eca', 'ECA232G3763' => 'eca', 'ECA232G4845' => 'eca', 'ECA234G1607' => 'eca', 'ECA246G0932' => 'eca', 'ECA247G0781' => 'eca', 'ECA247G1932' => 'eca', 'ECA247G2079' => 'eca', 'ECA247G3338' => 'eca', 'ECA247G4115' => 'eca', 'EL10Ac3g06552' => 'bvu', 'EL10Ac5g10721' => 'bvu', 'EL10Ac5g10722' => 'bvu', 'EL10Ac5g10723' => 'bvu', 'EL10Ac5g11361' => 'bvu', 'EL10Ac6g13553' => 'bvu', 'EL10As8g23872' => 'bvu', 'Eucgr.B00250' => 'egr', 'Eucgr.B00251' => 'egr', 'Eucgr.B03533' => 'egr', 'Eucgr.I02381' => 'egr', 'Eucgr.K02700' => 'egr', 'FAN02G0174' => 'fan', 'FAN02G3146' => 'fan', 'FAN04G1672' => 'fan', 'FAN04G2273' => 'fan', 'FAN05G2791' => 'fan', 'FAN05G4035' => 'fan', 'FAN07G0834' => 'fan', 'FAN08G1198' => 'fan', 'FAN09G4182' => 'fan', 'FAN12G0496' => 'fan', 'FAN13G1027' => 'fan', 'FAN13G2951' => 'fan', 'FAN14G0705' => 'fan', 'FAN14G0720' => 'fan', 'FAN17G0201' => 'fan', 'FAN17G2665' => 'fan', 'FAN18G1456' => 'fan', 'FAN18G1525' => 'fan', 'FAN18G3500' => 'fan', 'FAN28G2670' => 'fan', 'FvH4_1g12391' => 'fve', 'FvH4_4g23220' => 'fve', 'FvH4_5g08810' => 'fve', 'FvH4_5g28960' => 'fve', 'FvH4_6g42820' => 'fve', 'FvH4_6g51110' => 'fve', 'Glyma.02G051802' => 'gma', 'Glyma.04G185300' => 'gma', 'Glyma.05G202900' => 'gma', 'Glyma.08G010300' => 'gma', 'Glyma.16G131900' => 'gma', 'Glyma.17G087900' => 'gma', 'Gohir.A07G048600' => 'ghi', 'Gohir.A11G179000' => 'ghi', 'Gohir.A12G140900' => 'ghi', 'Gohir.A12G140950' => 'ghi', 'Gohir.A12G191700' => 'ghi', 'Gohir.A13G086300' => 'ghi', 'Gohir.D07G052900' => 'ghi', 'Gohir.D11G186600' => 'ghi', 'Gohir.D12G145575' => 'ghi', 'Gohir.D12G145650' => 'ghi', 'Gohir.D12G145725' => 'ghi', 'Gohir.D12G194050' => 'ghi', 'Gohir.D13G091800' => 'ghi', 'Gorai.001G055900' => 'gra', 'Gorai.007G198400' => 'gra', 'Gorai.008G157000' => 'gra', 'Gorai.008G157100' => 'gra', 'Gorai.008G208700' => 'gra', 'Gorai.010G138700' => 'gra', 'GSVIVG01000977001' => 'vvi', 'GSVIVG01007708001' => 'vvi', 'GSVIVG01008587001' => 'vvi', 'GSVIVG01018849001' => 'vvi', 'GSVIVG01032432001' => 'vvi', 'HanXRQChr02g0034131' => 'han', 'HanXRQChr02g0035981' => 'han', 'HanXRQChr02g0035991' => 'han', 'HanXRQChr05g0155611' => 'han', 'HanXRQChr05g0155621' => 'han', 'HanXRQChr08g0236501' => 'han', 'HanXRQChr09g0261321' => 'han', 'HanXRQChr09g0272081' => 'han', 'HanXRQChr10g0310741' => 'han', 'HanXRQChr11g0325591' => 'han', 'HanXRQChr12g0385691' => 'han', 'HanXRQChr13g0387801' => 'han', 'HanXRQChr15g0463011' => 'han', 'Haze_03826' => 'cav', 'Haze_03827' => 'cav', 'Haze_07183' => 'cav', 'Haze_07537' => 'cav', 'Haze_07539' => 'cav', 'Haze_12461' => 'cav', 'Haze_16115' => 'cav', 'Haze_16808' => 'cav', 'Haze_18531' => 'cav', 'Hma1.2p1_0046F.1_g026700' => 'hma', 'Hma1.2p1_0046F.1_g026710' => 'hma', 'Hma1.2p1_0168F.1_g074340' => 'hma', 'Hma1.2p1_0266F.1_g107030' => 'hma', 'Hma1.2p1_0266F.1_g107060' => 'hma', 'Hma1.2p1_0275F.1_g110510' => 'hma', 'Hma1.2p1_0592F.1_g185490' => 'hma', 'Hma1.2p1_0592F.1_g185500' => 'hma', 'Hma1.2p1_0592F.1_g185510' => 'hma', 'Hma1.2p1_0592F.1_g185520' => 'hma', 'Hma1.2p1_0592F.1_g185530' => 'hma', 'Hma1.2p1_0818F.1_g223450' => 'hma', 'HPP92_009708' => 'vpl', 'HPP92_009793' => 'vpl', 'HPP92_009796' => 'vpl', 'HPP92_009797' => 'vpl', 'HPP92_014940' => 'vpl', 'HPP92_014988' => 'vpl', 'Hund02463' => 'sun', 'Hund02760' => 'sun', 'Hund05071' => 'sun', 'Hund10108' => 'sun', 'Hund11204' => 'sun', 'Hund14016' => 'sun', 'Hund16464' => 'sun', 'Lalb_Chr09g0333391' => 'lal', 'Lalb_Chr11g0070461' => 'lal', 'Lalb_Chr12g0201671' => 'lal', 'Lalb_Chr13g0297161' => 'lal', 'Lj1g0002823' => 'lja', 'Lj3C1074T6' => 'lonja', 'Lj4A212T28' => 'lonja', 'Lj4g0005516' => 'lja', 'Lj4g0013705' => 'lja', 'Lj4g0027865' => 'lja', 'Lj5C92G16' => 'lonja', 'Lj5C92T12' => 'lonja', 'Lj7C596T3' => 'lonja', 'Lj9A446G59' => 'lonja', 'Lj9A482G21' => 'lonja', 'Lsat_1_v5_gn_1_28261' => 'lsa', 'Lsat_1_v5_gn_1_28281' => 'lsa', 'Lsat_1_v5_gn_1_32721' => 'lsa', 'Lsat_1_v5_gn_4_151760' => 'lsa', 'Lsat_1_v5_gn_4_2120' => 'lsa', 'Lsat_1_v5_gn_4_75761' => 'lsa', 'Lsat_1_v5_gn_5_10920' => 'lsa', 'Manes.02G099900' => 'mes', 'Manes.11G096200' => 'mes', 'Manes.12G007200' => 'mes', 'Manes.14G048300' => 'mes', 'Manes.17G114700' => 'mes', 'Mapoly0002s0070' => 'mpo', 'Mapoly0029s0099' => 'mpo', 'MBI07_g24742_MAGBIO' => 'mbi', 'MBI10_g27988_MAGBIO' => 'mbi', 'MBI11_g13057_MAGBIO' => 'mbi', 'MD02G1137200' => 'mdo', 'MD06G1137200' => 'mdo', 'MD07G1122300' => 'mdo', 'MD09G1078200' => 'mdo', 'MD13G1123700' => 'mdo', 'MD14G1151900' => 'mdo', 'MD17G1030900' => 'mdo', 'MD17G1068200' => 'mdo', 'MD17G1068600' => 'mdo', 'Medtr3g077540' => 'mtr', 'Medtr4g105530' => 'mtr', 'Medtr8g076580' => 'mtr', 'Medtr8g076590' => 'mtr', 'Medtr8g096410' => 'mtr', 'MELO3C016411.2' => 'cme', 'MELO3C017780.2' => 'cme', 'MELO3C022560.2' => 'cme', 'MELO3C026187.2' => 'cme', 'MELO3C026286.2' => 'cme', 'MELO3C032854.2' => 'cme', 'Migut.H02495' => 'egut', 'Migut.I00561' => 'egut', 'Migut.K01015' => 'egut', 'Migut.K01016' => 'egut', 'Migut.L00743' => 'egut', 'Migut.L00744' => 'egut', 'Migut.L00746' => 'egut', 'Migut.L00798' => 'egut', 'Migut.L00799' => 'egut', 'Migut.N02096' => 'egut', 'MSTRG.11259' => 'ama', 'MSTRG.23142' => 'ama', 'MSTRG.2499' => 'ama', 'Nitab4.5_0000003g0730' => 'nta', 'Nitab4.5_0000137g0020' => 'nta', 'Nitab4.5_0000721g0210' => 'nta', 'Nitab4.5_0000723g0050' => 'nta', 'Nitab4.5_0000913g0070' => 'nta', 'Nitab4.5_0001332g0040' => 'nta', 'Nitab4.5_0001771g0050' => 'nta', 'Nitab4.5_0001918g0050' => 'nta', 'Nitab4.5_0002686g0030' => 'nta', 'Nitab4.5_0003156g0020' => 'nta', 'Nitab4.5_0003383g0040' => 'nta', 'Nitab4.5_0003918g0010' => 'nta', 'Nitab4.5_0006760g0010' => 'nta', 'Nn1g05981' => 'nnu', 'Nn1g06288' => 'nnu', 'Nn3g16371' => 'nnu', 'Nn3g16786' => 'nnu', 'Nn4g22232' => 'nnu', 'Oeu005144.1' => 'oeu', 'Oeu005145.1' => 'oeu', 'Oeu011348.1' => 'oeu', 'Oeu016415.1' => 'oeu', 'Oeu023501.1' => 'oeu', 'Oeu044473.1' => 'oeu', 'Oeu048892.2' => 'oeu', 'Os01g0549200' => 'osa', 'Os02g0469300' => 'osa', 'Os04g0311100' => 'osa', 'Os06g0474900' => 'osa', 'Os10g0181700' => 'osa', 'Os11g0454800' => 'osa', 'Peaxi162Scf00037g00714' => 'pax', 'Peaxi162Scf00084g01217' => 'pax', 'Peaxi162Scf00257g00217' => 'pax', 'Peaxi162Scf00516g00215' => 'pax', 'Peaxi162Scf00689g00123' => 'pax', 'PGR044G2719' => 'pgr', 'PGR083G1360' => 'pgr', 'PGR102G2849' => 'pgr', 'PGR119G2534' => 'pgr', 'PGSC0003DMG400003538' => 'stu', 'PGSC0003DMG400028138' => 'stu', 'PGSC0003DMG400031732' => 'stu', 'PGSC0003DMG400038165' => 'stu', 'Phvul.002G284600' => 'pvu', 'Phvul.003G258200' => 'pvu', 'Phvul.009G176500' => 'pvu', 'Potri.003G167201' => 'ptr', 'Potri.005G118400' => 'ptr', 'Potri.012G089000' => 'ptr', 'Potri.012G102800' => 'ptr', 'Potri.015G079400' => 'ptr', 'Potri.015G100900' => 'ptr', 'Pp3c14_9810' => 'ppa', 'Pp3c15_10450' => 'ppa', 'Pp3c20_19150' => 'ppa', 'Pp3c23_12740' => 'ppa', 'Pp3c23_6310' => 'ppa', 'Pp3c24_3720' => 'ppa', 'Pp3c27_2580' => 'ppa', 'Pp3c9_8990' => 'ppa', 'PRCOL_00002854' => 'pco', 'Prupe.1G221200' => 'ppe', 'Prupe.3G289000' => 'ppe', 'Prupe.5G147000' => 'ppe', 'Prupe.6G157300' => 'ppe', 'Prupe.7G163400' => 'ppe', 'Psat0s2177g0040' => 'psa', 'Psat3g174760' => 'psa', 'Psat3g192160' => 'psa', 'Psat4g058520' => 'psa', 'Psat4g096840' => 'psa', 'Psat7g037320' => 'psa', 'PSO017G1274' => 'pso', 'PSO017G5166' => 'pso', 'PSO063G4558' => 'pso', 'PSO170G4458' => 'pso', 'PSO170G5005' => 'pso', 'PSO210G6156' => 'pso', 'PSO210G6635' => 'pso', 'PSO210G7397' => 'pso', 'PSO210G7700' => 'pso', 'PSO455G0035' => 'pso', 'PSO455G0180' => 'pso', 'PSO478G4515' => 'pso', 'PSO832G1305' => 'pso', 'PSO832G3489' => 'pso', 'QL02p075247' => 'qlo', 'QL03p051148' => 'qlo', 'QL05p010313' => 'qlo', 'QL06p034627' => 'qlo', 'QL10p001889' => 'qlo', 'QL10p010846' => 'qlo', 'RcHm_v2.0_Chr1g0350621' => 'rch', 'RcHm_v2.0_Chr1g0350641' => 'rch', 'RcHm_v2.0_Chr2g0092891' => 'rch', 'RcHm_v2.0_Chr2g0100251' => 'rch', 'RcHm_v2.0_Chr2g0158661' => 'rch', 'RcHm_v2.0_Chr2g0172741' => 'rch', 'RcHm_v2.0_Chr4g0429571' => 'rch', 'RcHm_v2.0_Chr5g0042471' => 'rch', 'RcHm_v2.0_Chr7g0189451' => 'rch', 'Rhsim08G0052000' => 'rsi', 'Rhsim08G0174400' => 'rsi', 'Rhsim08G0193200' => 'rsi', 'Rhsim10G0214800' => 'rsi', 'Rhsim10G0214900' => 'rsi', 'Rhsim10G0215000' => 'rsi', 'Rhsim12G0022900' => 'rsi', 'Rhsim12G0177500' => 'rsi', 'Rhsim12G0177700' => 'rsi', 'Sabra03G0122600' => 'sbr', 'Sabra05G0097400' => 'sbr', 'Sabra12G0064100' => 'sbr', 'Sabra15G0121300' => 'sbr', 'SalBow2G0642' => 'sbo', 'SalBow5G2667' => 'sbo', 'SalBow5G4873' => 'sbo', 'SalBow8G2395' => 'sbo', 'Sc03g0003290' => 'sci', 'Sc10g0010130' => 'sci', 'Sc22g0003650' => 'sci', 'Sed0001603' => 'sed', 'Sed0004259' => 'sed', 'Sed0006789' => 'sed', 'Sed0011838' => 'sed', 'Sed0012964' => 'sed', 'Sed0016383' => 'sed', 'Sed0019010' => 'sed', 'Sed0020188' => 'sed', 'SEGI_04702' => 'sgi', 'SEGI_17231' => 'sgi', 'SEGI_18877' => 'sgi', 'SEGI_25196' => 'sgi', 'SEGI_25515' => 'sgi', 'SEGI_28445' => 'sgi', 'SEGI_37452' => 'sgi', 'SGA_v2.0_scaffold188G40336' => 'sas', 'SGA_v2.0_scaffold228G43247' => 'sas', 'SGA_v2.0_scaffold280G46853' => 'sas', 'SGA_v2.0_scaffold34G13808' => 'sas', 'SGA_v2.0_scaffold40G15576' => 'sas', 'SGA_v2.0_scaffold611G53188' => 'sas', 'SGA_v2.0_scaffold78G25461' => 'sas', 'SGA_v2.0_scaffold90G27888' => 'sas', 'SHI08601' => 'shi', 'SHI08606' => 'shi', 'SHI17117' => 'shi', 'SHI17119' => 'shi', 'SMO118G0201' => 'smo', 'SMO169G0247' => 'smo', 'SMO176G0006' => 'smo', 'SMO176G0015' => 'smo', 'SMO202G0006' => 'smo', 'SMO240G0050' => 'smo', 'SMO286G0009' => 'smo', 'SMO338G0033' => 'smo', 'SMO356G0533' => 'smo', 'SMO364G0382' => 'smo', 'SMO367G0166' => 'smo', 'SMO367G1098' => 'smo', 'Solyc01g009920.3' => 'sly', 'Solyc01g099300.3' => 'sly', 'Solyc02g084700.3' => 'sly', 'Solyc03g097520.3' => 'sly', 'Solyc06g071580.3' => 'sly', 'Solyc10g081760.3' => 'sly', 'Sopen01g005480' => 'spe', 'Sopen01g042850' => 'spe', 'Sopen02g029370' => 'spe', 'Sopen03g028280' => 'spe', 'Sopen06g027870' => 'spe', 'Sopen10g032270' => 'spe', 'Sp5g18180' => 'spa', 'Sp6g12880' => 'spa', 'Sp6g30850' => 'spa', 'Sp7g22960' => 'spa', 'Sp7g34010' => 'spa', 'SpUn1326_0010' => 'spa', 'TAR371G0242' => 'tar', 'TAR622G0638' => 'tar', 'TAR628G1548' => 'tar', 'TAR629G1079' => 'tar', 'TAR629G3413' => 'tar', 'THA.LOC104804249' => 'tha', 'THA.LOC104808315' => 'tha', 'THA.LOC104809238' => 'tha', 'THA.LOC104825484' => 'tha', 'Thecc.01G025500' => 'tca', 'Thecc.03G015800' => 'tca', 'Thecc.03G018000' => 'tca', 'Thecc.03G134800' => 'tca', 'Thecc.04G014700' => 'tca', 'Thhalv10006991m.g' => 'esa', 'Thhalv10012707m.g' => 'esa', 'Thhalv10015739m.g' => 'esa', 'Thhalv10024553m.g' => 'esa', 'Thhalv10024673m.g' => 'esa', 'Thhalv10029187m.g' => 'esa', 'TPR.G12971' => 'tpr', 'TPR.G29396' => 'tpr', 'TPR.G33376' => 'tpr', 'TPR.G35508' => 'tpr', 'TPR.G35516' => 'tpr', 'TPR.G37317' => 'tpr', 'TPR.G37389' => 'tpr', 'TPR.G37523' => 'tpr', 'TPR.G559' => 'tpr', 'TWI14G0070' => 'twi', 'TWI14G0729' => 'twi', 'TWI18G0596' => 'twi', 'TWI39G0780' => 'twi', 'TWI39G0850' => 'twi', 'TWI73G1052' => 'twi', 'unitig_52.g17485' => 'ugi', 'unitig_61.g26355' => 'ugi', 'vmacro01040' => 'vma', 'vmacro16731' => 'vma', 'vmacro18270' => 'vma', 'vmacro19142' => 'vma', 'vmacro19407' => 'vma', 'vmacro19408' => 'vma', 'vmacro21899' => 'vma', 'vmacro21900' => 'vma', 'vmacro21901' => 'vma', 'VMungo0251G0490' => 'vmu', 'VMungo0251G1748' => 'vmu', 'VMungo1309G0421' => 'vmu', 'Zm00001eb086500' => 'zma', 'Zm00001eb150680' => 'zma', 'Zm00001eb162330' => 'zma', 'Zm00001eb203130' => 'zma', 'Zm00001eb369480' => 'zma', 'Zm00001eb382340' => 'zma', 'Zm00001eb416360' => 'zma' ), 'gf_id' => 'HOM05D000902', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000902' ), 'data_identifier' => 'HOM05D000902', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000902', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '663', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02470' => 'bna', 'A01p16260' => 'bna', 'A02p01680' => 'bna', 'A03p16600' => 'bna', 'A03p55660' => 'bna', 'A03p64160' => 'bna', 'A03p64170' => 'bna', 'A08p31900' => 'bna', 'A09p59530' => 'bna', 'A10p08230' => 'bna', 'A10p25090' => 'bna', 'Aa31LG3G7100' => 'aar', 'Aa31LG3G7110' => 'aar', 'Aa31LG6G13160' => 'aar', 'Aa31LG7G10770' => 'aar', 'Aa31LG7G3830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2723' => 'aag', 'Actinidia08045' => 'ach', 'Actinidia08888' => 'ach', 'Actinidia18333' => 'ach', 'Actinidia19334' => 'ach', 'Actinidia25552' => 'ach', 'Actinidia26089' => 'ach', 'Actinidia30615' => 'ach', 'Actinidia30616' => 'ach', 'Actinidia33083' => 'ach', 'Actinidia35762' => 'ach', 'Ah.02g110620' => 'amhyb', 'Ah.11g046390' => 'amhyb', 'AL1G31670' => 'aly', 'AL6G23730' => 'aly', 'AL7G14740' => 'aly', 'AL7G14750' => 'aly', 'AL7G14760' => 'aly', 'AL7G28220' => 'aly', 'AL8G24940' => 'aly', 'Aqoxy3G01665' => 'aox', 'Aqoxy3G02853' => 'aox', 'Aqoxy5G01513' => 'aox', 'Aqoxy5G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8SKA4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ75LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKDA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0LJZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7REX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZP4YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWX7I5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2QKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS0L9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPCD8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q161UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC7XCF' => 'arhy', 'AT1G19100' => 'ath', 'AT4G24970' => 'ath', 'AT4G36270' => 'ath', 'AT4G36280' => 'ath', 'AT4G36290' => 'ath', 'AT5G13130' => 'ath', 'AT5G50780' => 'ath', 'ATR0582G266' => 'atr', 'ATR0661G195' => 'atr', 'ATR1152G031' => 'atr', 'Atru.chr11.2382' => 'acertr', 'Atru.chr12.2337' => 'acertr', 'Atru.chr3.744' => 'acertr', 'Atru.chr6.1870' => 'acertr', 'Atru.chr9.2515' => 'acertr', 'AUR62004120' => 'cqu', 'AUR62005667' => 'cqu', 'AUR62007634' => 'cqu', 'AUR62008186' => 'cqu', 'AUR62008187' => 'cqu', 'AUR62008188' => 'cqu', 'AUR62027954' => 'cqu', 'AUR62028766' => 'cqu', 'AUR62028767' => 'cqu', 'AUR62028768' => 'cqu', 'AUR62028886' => 'cqu', 'AUR62029563' => 'cqu', 'AUR62038832' => 'cqu', 'BcaB01g04149' => 'bca', 'BcaB03g12940' => 'bca', 'BcaB03g13090' => 'bca', 'BcaB03g14466' => 'bca', 'BcaB05g24035' => 'bca', 'BcaC01g06050' => 'bca', 'BcaC04g19148' => 'bca', 'BcaC04g20761' => 'bca', 'BcaC06g32845' => 'bca', 'BcaC07g41274' => 'bca', 'BcaC09g50827' => 'bca', 'BcaNung00741' => 'bca', 'BcaNung00742' => 'bca', 'BcaNung01859' => 'bca', 'BcaNung03985' => 'bca', 'BcaNung03989' => 'bca', 'BcaNung05661' => 'bca', 'BolC1t00257H' => 'bol', 'BolC1t01956H' => 'bol', 'BolC2t06534H' => 'bol', 'BolC3t14334H' => 'bol', 'BolC5t30451H' => 'bol', 'BolC7t45880H' => 'bol', 'BolC7t46586H' => 'bol', 'BolC8t49301H' => 'bol', 'BolC8t51837H' => 'bol', 'BolC9t56822H' => 'bol', 'BolC9t59235H' => 'bol', 'BraA01t00234Z' => 'bra', 'BraA01t01563Z' => 'bra', 'BraA02t05147Z' => 'bra', 'BraA03t10947Z' => 'bra', 'BraA03t14633Z' => 'bra', 'BraA08t35112Z' => 'bra', 'BraA09t41330Z' => 'bra', 'BraA10t44570Z' => 'bra', 'C01p02670' => 'bna', 'C01p20260' => 'bna', 'C02p05890' => 'bna', 'C03p19530' => 'bna', 'C05p17470' => 'bna', 'C07p53900' => 'bna', 'C07p61630' => 'bna', 'C08p16800' => 'bna', 'C08p42810' => 'bna', 'C09p39480' => 'bna', 'C09p63980' => 'bna', 'CAN.G1001.7' => 'can', 'CAN.G1034.55' => 'can', 'CAN.G143.7' => 'can', 'CAN.G3340.1' => 'can', 'CAN.G358.19' => 'can', 'CAN.G373.2' => 'can', 'CAN.G674.16' => 'can', 'CAN.G674.17' => 'can', 'CAN.G674.18' => 'can', 'CAN.G732.2' => 'can', 'CAN.G732.3' => 'can', 'CAN.G993.39' => 'can', 'CANSAT01G2052' => 'cansat', 'CANSAT80G0070' => 'cansat', 'CANSAT80G0483' => 'cansat', 'CANSAT80G0625' => 'cansat', 'CARHR019690' => 'chi', 'CARHR080280' => 'chi', 'CARHR152750' => 'chi', 'CARHR152760' => 'chi', 'CARHR152770' => 'chi', 'CARHR200340' => 'chi', 'CARHR232370' => 'chi', 'CARHR244670' => 'chi', 'CARHR244680' => 'chi', 'CARHR257520' => 'chi', 'Carub.0001s1872' => 'cru', 'Carub.0006s1130' => 'cru', 'Carub.0007s0396' => 'cru', 'Carub.0007s0397' => 'cru', 'Carub.0007s1608' => 'cru', 'Carub.0008s1068' => 'cru', 'Carub.0008s1077' => 'cru', 'Ca_16158_v3' => 'car', 'Ca_17571_v3' => 'car', 'Ca_21936_v3' => 'car', 'Ca_22350_v3' => 'car', 'CBR_g22445' => 'cbr', 'CBR_g26290' => 'cbr', 'Cc04_g09610' => 'ccan', 'Cc04_g12280' => 'ccan', 'Cc07_g10230' => 'ccan', 'CDE02G0093' => 'cde', 'CDE02G0701' => 'cde', 'CDE04G1050' => 'cde', 'CDE05G1833' => 'cde', 'CDE05G3058' => 'cde', 'CDE05G3380' => 'cde', 'CDE06G0536' => 'cde', 'Cfa006923' => 'cfa', 'Cfa009402' => 'cfa', 'Cfa018751' => 'cfa', 'Cfa019164' => 'cfa', 'Cfa022935' => 'cfa', 'Ciclev10019081m.g' => 'ccl', 'Ciclev10025076m.g' => 'ccl', 'Ciclev10030712m.g' => 'ccl', 'Ciclev10033760m.g' => 'ccl', 'CiPaw.05G105600' => 'cil', 'CiPaw.08G136700' => 'cil', 'CiPaw.11G003900' => 'cil', 'CiPaw.11G023700' => 'cil', 'CiPaw.12G003700' => 'cil', 'ClCG06G017100' => 'cla', 'ClCG06G018110' => 'cla', 'ClCG07G008800' => 'cla', 'ClCG07G015330' => 'cla', 'COL.COLO4_13698' => 'col', 'COL.COLO4_16659' => 'col', 'COL.COLO4_21986' => 'col', 'COL.COLO4_24049' => 'col', 'COL.COLO4_29061' => 'col', 'COL.COLO4_29075' => 'col', 'COL.COLO4_30094' => 'col', 'Cpa.g.c33689' => 'cpa', 'Cpa.g.sc108.39' => 'cpa', 'Cpa.g.sc108.41' => 'cpa', 'Cpa.g.sc1163.1' => 'cpa', 'Cpa.g.sc4.155' => 'cpa', 'Cpa.g.sc6.194' => 'cpa', 'CsaV3_1G000340' => 'csa', 'CsaV3_1G001400' => 'csa', 'CsaV3_4G002220' => 'csa', 'CsaV3_4G005370' => 'csa', 'CSS0007487' => 'camsi', 'CSS0008066' => 'camsi', 'CSS0009120' => 'camsi', 'CSS0015512' => 'camsi', 'CSS0022409' => 'camsi', 'CSS0025358' => 'camsi', 'CSS0044547' => 'camsi', 'DCAR_013057' => 'dca', 'DCAR_015058' => 'dca', 'DCAR_016027' => 'dca', 'DCAR_017327' => 'dca', 'DCAR_020743' => 'dca', 'DCAR_026157' => 'dca', 'DCAR_032339' => 'dca', 'DCAR_032340' => 'dca', 'Dinv11200' => 'din', 'Dinv11201' => 'din', 'Dinv20631' => 'din', 'Dinv23182' => 'din', 'Dinv33466' => 'din', 'Dinv33583' => 'din', 'Dinv38565' => 'din', 'Duzib068G0200' => 'dzi', 'Duzib147G0132' => 'dzi', 'Duzib147G0635' => 'dzi', 'Duzib205G1670' => 'dzi', 'Duzib251G0606' => 'dzi', 'ECA232G3336' => 'eca', 'ECA232G3763' => 'eca', 'ECA232G4845' => 'eca', 'ECA234G1607' => 'eca', 'ECA246G0932' => 'eca', 'ECA247G0781' => 'eca', 'ECA247G1932' => 'eca', 'ECA247G2079' => 'eca', 'ECA247G3338' => 'eca', 'ECA247G4115' => 'eca', 'EL10Ac3g06552' => 'bvu', 'EL10Ac5g10721' => 'bvu', 'EL10Ac5g10722' => 'bvu', 'EL10Ac5g10723' => 'bvu', 'EL10Ac5g11361' => 'bvu', 'EL10Ac6g13553' => 'bvu', 'EL10As8g23872' => 'bvu', 'Eucgr.B00250' => 'egr', 'Eucgr.B00251' => 'egr', 'Eucgr.B03533' => 'egr', 'Eucgr.I02381' => 'egr', 'Eucgr.K02700' => 'egr', 'FAN02G0174' => 'fan', 'FAN02G3146' => 'fan', 'FAN04G1672' => 'fan', 'FAN04G2273' => 'fan', 'FAN05G2791' => 'fan', 'FAN05G4035' => 'fan', 'FAN07G0834' => 'fan', 'FAN08G1198' => 'fan', 'FAN09G4182' => 'fan', 'FAN12G0496' => 'fan', 'FAN13G1027' => 'fan', 'FAN13G2951' => 'fan', 'FAN14G0705' => 'fan', 'FAN14G0720' => 'fan', 'FAN17G0201' => 'fan', 'FAN17G2665' => 'fan', 'FAN18G1456' => 'fan', 'FAN18G1525' => 'fan', 'FAN18G3500' => 'fan', 'FAN28G2670' => 'fan', 'FvH4_1g12391' => 'fve', 'FvH4_4g23220' => 'fve', 'FvH4_5g08810' => 'fve', 'FvH4_5g28960' => 'fve', 'FvH4_6g42820' => 'fve', 'FvH4_6g51110' => 'fve', 'Glyma.02G051802' => 'gma', 'Glyma.04G185300' => 'gma', 'Glyma.05G202900' => 'gma', 'Glyma.08G010300' => 'gma', 'Glyma.16G131900' => 'gma', 'Glyma.17G087900' => 'gma', 'Gohir.A07G048600' => 'ghi', 'Gohir.A11G179000' => 'ghi', 'Gohir.A12G140900' => 'ghi', 'Gohir.A12G140950' => 'ghi', 'Gohir.A12G191700' => 'ghi', 'Gohir.A13G086300' => 'ghi', 'Gohir.D07G052900' => 'ghi', 'Gohir.D11G186600' => 'ghi', 'Gohir.D12G145575' => 'ghi', 'Gohir.D12G145650' => 'ghi', 'Gohir.D12G145725' => 'ghi', 'Gohir.D12G194050' => 'ghi', 'Gohir.D13G091800' => 'ghi', 'Gorai.001G055900' => 'gra', 'Gorai.007G198400' => 'gra', 'Gorai.008G157000' => 'gra', 'Gorai.008G157100' => 'gra', 'Gorai.008G208700' => 'gra', 'Gorai.010G138700' => 'gra', 'GSVIVG01000977001' => 'vvi', 'GSVIVG01007708001' => 'vvi', 'GSVIVG01008587001' => 'vvi', 'GSVIVG01018849001' => 'vvi', 'GSVIVG01032432001' => 'vvi', 'HanXRQChr02g0034131' => 'han', 'HanXRQChr02g0035981' => 'han', 'HanXRQChr02g0035991' => 'han', 'HanXRQChr05g0155611' => 'han', 'HanXRQChr05g0155621' => 'han', 'HanXRQChr08g0236501' => 'han', 'HanXRQChr09g0261321' => 'han', 'HanXRQChr09g0272081' => 'han', 'HanXRQChr10g0310741' => 'han', 'HanXRQChr11g0325591' => 'han', 'HanXRQChr12g0385691' => 'han', 'HanXRQChr13g0387801' => 'han', 'HanXRQChr15g0463011' => 'han', 'Haze_03826' => 'cav', 'Haze_03827' => 'cav', 'Haze_07183' => 'cav', 'Haze_07537' => 'cav', 'Haze_07539' => 'cav', 'Haze_12461' => 'cav', 'Haze_16115' => 'cav', 'Haze_16808' => 'cav', 'Haze_18531' => 'cav', 'Hma1.2p1_0046F.1_g026700' => 'hma', 'Hma1.2p1_0046F.1_g026710' => 'hma', 'Hma1.2p1_0168F.1_g074340' => 'hma', 'Hma1.2p1_0266F.1_g107030' => 'hma', 'Hma1.2p1_0266F.1_g107060' => 'hma', 'Hma1.2p1_0275F.1_g110510' => 'hma', 'Hma1.2p1_0592F.1_g185490' => 'hma', 'Hma1.2p1_0592F.1_g185500' => 'hma', 'Hma1.2p1_0592F.1_g185510' => 'hma', 'Hma1.2p1_0592F.1_g185520' => 'hma', 'Hma1.2p1_0592F.1_g185530' => 'hma', 'Hma1.2p1_0818F.1_g223450' => 'hma', 'HPP92_009708' => 'vpl', 'HPP92_009793' => 'vpl', 'HPP92_009796' => 'vpl', 'HPP92_009797' => 'vpl', 'HPP92_014940' => 'vpl', 'HPP92_014988' => 'vpl', 'Hund02463' => 'sun', 'Hund02760' => 'sun', 'Hund05071' => 'sun', 'Hund10108' => 'sun', 'Hund11204' => 'sun', 'Hund14016' => 'sun', 'Hund16464' => 'sun', 'Lalb_Chr09g0333391' => 'lal', 'Lalb_Chr11g0070461' => 'lal', 'Lalb_Chr12g0201671' => 'lal', 'Lalb_Chr13g0297161' => 'lal', 'Lj1g0002823' => 'lja', 'Lj3C1074T6' => 'lonja', 'Lj4A212T28' => 'lonja', 'Lj4g0005516' => 'lja', 'Lj4g0013705' => 'lja', 'Lj4g0027865' => 'lja', 'Lj5C92G16' => 'lonja', 'Lj5C92T12' => 'lonja', 'Lj7C596T3' => 'lonja', 'Lj9A446G59' => 'lonja', 'Lj9A482G21' => 'lonja', 'Lsat_1_v5_gn_1_28261' => 'lsa', 'Lsat_1_v5_gn_1_28281' => 'lsa', 'Lsat_1_v5_gn_1_32721' => 'lsa', 'Lsat_1_v5_gn_4_151760' => 'lsa', 'Lsat_1_v5_gn_4_2120' => 'lsa', 'Lsat_1_v5_gn_4_75761' => 'lsa', 'Lsat_1_v5_gn_5_10920' => 'lsa', 'Manes.02G099900' => 'mes', 'Manes.11G096200' => 'mes', 'Manes.12G007200' => 'mes', 'Manes.14G048300' => 'mes', 'Manes.17G114700' => 'mes', 'Mapoly0002s0070' => 'mpo', 'Mapoly0029s0099' => 'mpo', 'MBI07_g24742_MAGBIO' => 'mbi', 'MBI10_g27988_MAGBIO' => 'mbi', 'MBI11_g13057_MAGBIO' => 'mbi', 'MD02G1137200' => 'mdo', 'MD06G1137200' => 'mdo', 'MD07G1122300' => 'mdo', 'MD09G1078200' => 'mdo', 'MD13G1123700' => 'mdo', 'MD14G1151900' => 'mdo', 'MD17G1030900' => 'mdo', 'MD17G1068200' => 'mdo', 'MD17G1068600' => 'mdo', 'Medtr3g077540' => 'mtr', 'Medtr4g105530' => 'mtr', 'Medtr8g076580' => 'mtr', 'Medtr8g076590' => 'mtr', 'Medtr8g096410' => 'mtr', 'MELO3C016411.2' => 'cme', 'MELO3C017780.2' => 'cme', 'MELO3C022560.2' => 'cme', 'MELO3C026187.2' => 'cme', 'MELO3C026286.2' => 'cme', 'MELO3C032854.2' => 'cme', 'Migut.H02495' => 'egut', 'Migut.I00561' => 'egut', 'Migut.K01015' => 'egut', 'Migut.K01016' => 'egut', 'Migut.L00743' => 'egut', 'Migut.L00744' => 'egut', 'Migut.L00746' => 'egut', 'Migut.L00798' => 'egut', 'Migut.L00799' => 'egut', 'Migut.N02096' => 'egut', 'MSTRG.11259' => 'ama', 'MSTRG.23142' => 'ama', 'MSTRG.2499' => 'ama', 'Nitab4.5_0000003g0730' => 'nta', 'Nitab4.5_0000137g0020' => 'nta', 'Nitab4.5_0000721g0210' => 'nta', 'Nitab4.5_0000723g0050' => 'nta', 'Nitab4.5_0000913g0070' => 'nta', 'Nitab4.5_0001332g0040' => 'nta', 'Nitab4.5_0001771g0050' => 'nta', 'Nitab4.5_0001918g0050' => 'nta', 'Nitab4.5_0002686g0030' => 'nta', 'Nitab4.5_0003156g0020' => 'nta', 'Nitab4.5_0003383g0040' => 'nta', 'Nitab4.5_0003918g0010' => 'nta', 'Nitab4.5_0006760g0010' => 'nta', 'Nn1g05981' => 'nnu', 'Nn1g06288' => 'nnu', 'Nn3g16371' => 'nnu', 'Nn3g16786' => 'nnu', 'Nn4g22232' => 'nnu', 'Oeu005144.1' => 'oeu', 'Oeu005145.1' => 'oeu', 'Oeu011348.1' => 'oeu', 'Oeu016415.1' => 'oeu', 'Oeu023501.1' => 'oeu', 'Oeu044473.1' => 'oeu', 'Oeu048892.2' => 'oeu', 'Os01g0549200' => 'osa', 'Os02g0469300' => 'osa', 'Os04g0311100' => 'osa', 'Os06g0474900' => 'osa', 'Os10g0181700' => 'osa', 'Os11g0454800' => 'osa', 'Peaxi162Scf00037g00714' => 'pax', 'Peaxi162Scf00084g01217' => 'pax', 'Peaxi162Scf00257g00217' => 'pax', 'Peaxi162Scf00516g00215' => 'pax', 'Peaxi162Scf00689g00123' => 'pax', 'PGR044G2719' => 'pgr', 'PGR083G1360' => 'pgr', 'PGR102G2849' => 'pgr', 'PGR119G2534' => 'pgr', 'PGSC0003DMG400003538' => 'stu', 'PGSC0003DMG400028138' => 'stu', 'PGSC0003DMG400031732' => 'stu', 'PGSC0003DMG400038165' => 'stu', 'Phvul.002G284600' => 'pvu', 'Phvul.003G258200' => 'pvu', 'Phvul.009G176500' => 'pvu', 'Potri.003G167201' => 'ptr', 'Potri.005G118400' => 'ptr', 'Potri.012G089000' => 'ptr', 'Potri.012G102800' => 'ptr', 'Potri.015G079400' => 'ptr', 'Potri.015G100900' => 'ptr', 'Pp3c14_9810' => 'ppa', 'Pp3c15_10450' => 'ppa', 'Pp3c20_19150' => 'ppa', 'Pp3c23_12740' => 'ppa', 'Pp3c23_6310' => 'ppa', 'Pp3c24_3720' => 'ppa', 'Pp3c27_2580' => 'ppa', 'Pp3c9_8990' => 'ppa', 'PRCOL_00002854' => 'pco', 'Prupe.1G221200' => 'ppe', 'Prupe.3G289000' => 'ppe', 'Prupe.5G147000' => 'ppe', 'Prupe.6G157300' => 'ppe', 'Prupe.7G163400' => 'ppe', 'Psat0s2177g0040' => 'psa', 'Psat3g174760' => 'psa', 'Psat3g192160' => 'psa', 'Psat4g058520' => 'psa', 'Psat4g096840' => 'psa', 'Psat7g037320' => 'psa', 'PSO017G1274' => 'pso', 'PSO017G5166' => 'pso', 'PSO063G4558' => 'pso', 'PSO170G4458' => 'pso', 'PSO170G5005' => 'pso', 'PSO210G6156' => 'pso', 'PSO210G6635' => 'pso', 'PSO210G7397' => 'pso', 'PSO210G7700' => 'pso', 'PSO455G0035' => 'pso', 'PSO455G0180' => 'pso', 'PSO478G4515' => 'pso', 'PSO832G1305' => 'pso', 'PSO832G3489' => 'pso', 'QL02p075247' => 'qlo', 'QL03p051148' => 'qlo', 'QL05p010313' => 'qlo', 'QL06p034627' => 'qlo', 'QL10p001889' => 'qlo', 'QL10p010846' => 'qlo', 'RcHm_v2.0_Chr1g0350621' => 'rch', 'RcHm_v2.0_Chr1g0350641' => 'rch', 'RcHm_v2.0_Chr2g0092891' => 'rch', 'RcHm_v2.0_Chr2g0100251' => 'rch', 'RcHm_v2.0_Chr2g0158661' => 'rch', 'RcHm_v2.0_Chr2g0172741' => 'rch', 'RcHm_v2.0_Chr4g0429571' => 'rch', 'RcHm_v2.0_Chr5g0042471' => 'rch', 'RcHm_v2.0_Chr7g0189451' => 'rch', 'Rhsim08G0052000' => 'rsi', 'Rhsim08G0174400' => 'rsi', 'Rhsim08G0193200' => 'rsi', 'Rhsim10G0214800' => 'rsi', 'Rhsim10G0214900' => 'rsi', 'Rhsim10G0215000' => 'rsi', 'Rhsim12G0022900' => 'rsi', 'Rhsim12G0177500' => 'rsi', 'Rhsim12G0177700' => 'rsi', 'Sabra03G0122600' => 'sbr', 'Sabra05G0097400' => 'sbr', 'Sabra12G0064100' => 'sbr', 'Sabra15G0121300' => 'sbr', 'SalBow2G0642' => 'sbo', 'SalBow5G2667' => 'sbo', 'SalBow5G4873' => 'sbo', 'SalBow8G2395' => 'sbo', 'Sc03g0003290' => 'sci', 'Sc10g0010130' => 'sci', 'Sc22g0003650' => 'sci', 'Sed0001603' => 'sed', 'Sed0004259' => 'sed', 'Sed0006789' => 'sed', 'Sed0011838' => 'sed', 'Sed0012964' => 'sed', 'Sed0016383' => 'sed', 'Sed0019010' => 'sed', 'Sed0020188' => 'sed', 'SEGI_04702' => 'sgi', 'SEGI_17231' => 'sgi', 'SEGI_18877' => 'sgi', 'SEGI_25196' => 'sgi', 'SEGI_25515' => 'sgi', 'SEGI_28445' => 'sgi', 'SEGI_37452' => 'sgi', 'SGA_v2.0_scaffold188G40336' => 'sas', 'SGA_v2.0_scaffold228G43247' => 'sas', 'SGA_v2.0_scaffold280G46853' => 'sas', 'SGA_v2.0_scaffold34G13808' => 'sas', 'SGA_v2.0_scaffold40G15576' => 'sas', 'SGA_v2.0_scaffold611G53188' => 'sas', 'SGA_v2.0_scaffold78G25461' => 'sas', 'SGA_v2.0_scaffold90G27888' => 'sas', 'SHI08601' => 'shi', 'SHI08606' => 'shi', 'SHI17117' => 'shi', 'SHI17119' => 'shi', 'SMO118G0201' => 'smo', 'SMO169G0247' => 'smo', 'SMO176G0006' => 'smo', 'SMO176G0015' => 'smo', 'SMO202G0006' => 'smo', 'SMO240G0050' => 'smo', 'SMO286G0009' => 'smo', 'SMO338G0033' => 'smo', 'SMO356G0533' => 'smo', 'SMO364G0382' => 'smo', 'SMO367G0166' => 'smo', 'SMO367G1098' => 'smo', 'Solyc01g009920.3' => 'sly', 'Solyc01g099300.3' => 'sly', 'Solyc02g084700.3' => 'sly', 'Solyc03g097520.3' => 'sly', 'Solyc06g071580.3' => 'sly', 'Solyc10g081760.3' => 'sly', 'Sopen01g005480' => 'spe', 'Sopen01g042850' => 'spe', 'Sopen02g029370' => 'spe', 'Sopen03g028280' => 'spe', 'Sopen06g027870' => 'spe', 'Sopen10g032270' => 'spe', 'Sp5g18180' => 'spa', 'Sp6g12880' => 'spa', 'Sp6g30850' => 'spa', 'Sp7g22960' => 'spa', 'Sp7g34010' => 'spa', 'SpUn1326_0010' => 'spa', 'TAR371G0242' => 'tar', 'TAR622G0638' => 'tar', 'TAR628G1548' => 'tar', 'TAR629G1079' => 'tar', 'TAR629G3413' => 'tar', 'THA.LOC104804249' => 'tha', 'THA.LOC104808315' => 'tha', 'THA.LOC104809238' => 'tha', 'THA.LOC104825484' => 'tha', 'Thecc.01G025500' => 'tca', 'Thecc.03G015800' => 'tca', 'Thecc.03G018000' => 'tca', 'Thecc.03G134800' => 'tca', 'Thecc.04G014700' => 'tca', 'Thhalv10006991m.g' => 'esa', 'Thhalv10012707m.g' => 'esa', 'Thhalv10015739m.g' => 'esa', 'Thhalv10024553m.g' => 'esa', 'Thhalv10024673m.g' => 'esa', 'Thhalv10029187m.g' => 'esa', 'TPR.G12971' => 'tpr', 'TPR.G29396' => 'tpr', 'TPR.G33376' => 'tpr', 'TPR.G35508' => 'tpr', 'TPR.G35516' => 'tpr', 'TPR.G37317' => 'tpr', 'TPR.G37389' => 'tpr', 'TPR.G37523' => 'tpr', 'TPR.G559' => 'tpr', 'TWI14G0070' => 'twi', 'TWI14G0729' => 'twi', 'TWI18G0596' => 'twi', 'TWI39G0780' => 'twi', 'TWI39G0850' => 'twi', 'TWI73G1052' => 'twi', 'unitig_52.g17485' => 'ugi', 'unitig_61.g26355' => 'ugi', 'vmacro01040' => 'vma', 'vmacro16731' => 'vma', 'vmacro18270' => 'vma', 'vmacro19142' => 'vma', 'vmacro19407' => 'vma', 'vmacro19408' => 'vma', 'vmacro21899' => 'vma', 'vmacro21900' => 'vma', 'vmacro21901' => 'vma', 'VMungo0251G0490' => 'vmu', 'VMungo0251G1748' => 'vmu', 'VMungo1309G0421' => 'vmu', 'Zm00001eb086500' => 'zma', 'Zm00001eb150680' => 'zma', 'Zm00001eb162330' => 'zma', 'Zm00001eb203130' => 'zma', 'Zm00001eb369480' => 'zma', 'Zm00001eb382340' => 'zma', 'Zm00001eb416360' => 'zma' ) $gf_id = 'HOM05D000902' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000902' ) $data_identifier = 'HOM05D000902' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 13, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 10, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 6, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 9, 'hma' => (int) 12, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 4, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 6, 'ppa' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 6, 'rch' => (int) 9, 'rsi' => (int) 9, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 12, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 3, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416360' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000902', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '663', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02470' => 'bna', 'A01p16260' => 'bna', 'A02p01680' => 'bna', 'A03p16600' => 'bna', 'A03p55660' => 'bna', 'A03p64160' => 'bna', 'A03p64170' => 'bna', 'A08p31900' => 'bna', 'A09p59530' => 'bna', 'A10p08230' => 'bna', 'A10p25090' => 'bna', 'Aa31LG3G7100' => 'aar', 'Aa31LG3G7110' => 'aar', 'Aa31LG6G13160' => 'aar', 'Aa31LG7G10770' => 'aar', 'Aa31LG7G3830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2723' => 'aag', 'Actinidia08045' => 'ach', 'Actinidia08888' => 'ach', 'Actinidia18333' => 'ach', 'Actinidia19334' => 'ach', 'Actinidia25552' => 'ach', 'Actinidia26089' => 'ach', 'Actinidia30615' => 'ach', 'Actinidia30616' => 'ach', 'Actinidia33083' => 'ach', 'Actinidia35762' => 'ach', 'Ah.02g110620' => 'amhyb', 'Ah.11g046390' => 'amhyb', 'AL1G31670' => 'aly', 'AL6G23730' => 'aly', 'AL7G14740' => 'aly', 'AL7G14750' => 'aly', 'AL7G14760' => 'aly', 'AL7G28220' => 'aly', 'AL8G24940' => 'aly', 'Aqoxy3G01665' => 'aox', 'Aqoxy3G02853' => 'aox', 'Aqoxy5G01513' => 'aox', 'Aqoxy5G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8SKA4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ75LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKDA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0LJZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7REX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZP4YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWX7I5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2QKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS0L9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPCD8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q161UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC7XCF' => 'arhy', 'AT1G19100' => 'ath', 'AT4G24970' => 'ath', 'AT4G36270' => 'ath', 'AT4G36280' => 'ath', 'AT4G36290' => 'ath', 'AT5G13130' => 'ath', 'AT5G50780' => 'ath', 'ATR0582G266' => 'atr', 'ATR0661G195' => 'atr', 'ATR1152G031' => 'atr', 'Atru.chr11.2382' => 'acertr', 'Atru.chr12.2337' => 'acertr', 'Atru.chr3.744' => 'acertr', 'Atru.chr6.1870' => 'acertr', 'Atru.chr9.2515' => 'acertr', 'AUR62004120' => 'cqu', 'AUR62005667' => 'cqu', 'AUR62007634' => 'cqu', 'AUR62008186' => 'cqu', 'AUR62008187' => 'cqu', 'AUR62008188' => 'cqu', 'AUR62027954' => 'cqu', 'AUR62028766' => 'cqu', 'AUR62028767' => 'cqu', 'AUR62028768' => 'cqu', 'AUR62028886' => 'cqu', 'AUR62029563' => 'cqu', 'AUR62038832' => 'cqu', 'BcaB01g04149' => 'bca', 'BcaB03g12940' => 'bca', 'BcaB03g13090' => 'bca', 'BcaB03g14466' => 'bca', 'BcaB05g24035' => 'bca', 'BcaC01g06050' => 'bca', 'BcaC04g19148' => 'bca', 'BcaC04g20761' => 'bca', 'BcaC06g32845' => 'bca', 'BcaC07g41274' => 'bca', 'BcaC09g50827' => 'bca', 'BcaNung00741' => 'bca', 'BcaNung00742' => 'bca', 'BcaNung01859' => 'bca', 'BcaNung03985' => 'bca', 'BcaNung03989' => 'bca', 'BcaNung05661' => 'bca', 'BolC1t00257H' => 'bol', 'BolC1t01956H' => 'bol', 'BolC2t06534H' => 'bol', 'BolC3t14334H' => 'bol', 'BolC5t30451H' => 'bol', 'BolC7t45880H' => 'bol', 'BolC7t46586H' => 'bol', 'BolC8t49301H' => 'bol', 'BolC8t51837H' => 'bol', 'BolC9t56822H' => 'bol', 'BolC9t59235H' => 'bol', 'BraA01t00234Z' => 'bra', 'BraA01t01563Z' => 'bra', 'BraA02t05147Z' => 'bra', 'BraA03t10947Z' => 'bra', 'BraA03t14633Z' => 'bra', 'BraA08t35112Z' => 'bra', 'BraA09t41330Z' => 'bra', 'BraA10t44570Z' => 'bra', 'C01p02670' => 'bna', 'C01p20260' => 'bna', 'C02p05890' => 'bna', 'C03p19530' => 'bna', 'C05p17470' => 'bna', 'C07p53900' => 'bna', 'C07p61630' => 'bna', 'C08p16800' => 'bna', 'C08p42810' => 'bna', 'C09p39480' => 'bna', 'C09p63980' => 'bna', 'CAN.G1001.7' => 'can', 'CAN.G1034.55' => 'can', 'CAN.G143.7' => 'can', 'CAN.G3340.1' => 'can', 'CAN.G358.19' => 'can', 'CAN.G373.2' => 'can', 'CAN.G674.16' => 'can', 'CAN.G674.17' => 'can', 'CAN.G674.18' => 'can', 'CAN.G732.2' => 'can', 'CAN.G732.3' => 'can', 'CAN.G993.39' => 'can', 'CANSAT01G2052' => 'cansat', 'CANSAT80G0070' => 'cansat', 'CANSAT80G0483' => 'cansat', 'CANSAT80G0625' => 'cansat', 'CARHR019690' => 'chi', 'CARHR080280' => 'chi', 'CARHR152750' => 'chi', 'CARHR152760' => 'chi', 'CARHR152770' => 'chi', 'CARHR200340' => 'chi', 'CARHR232370' => 'chi', 'CARHR244670' => 'chi', 'CARHR244680' => 'chi', 'CARHR257520' => 'chi', 'Carub.0001s1872' => 'cru', 'Carub.0006s1130' => 'cru', 'Carub.0007s0396' => 'cru', 'Carub.0007s0397' => 'cru', 'Carub.0007s1608' => 'cru', 'Carub.0008s1068' => 'cru', 'Carub.0008s1077' => 'cru', 'Ca_16158_v3' => 'car', 'Ca_17571_v3' => 'car', 'Ca_21936_v3' => 'car', 'Ca_22350_v3' => 'car', 'CBR_g22445' => 'cbr', 'CBR_g26290' => 'cbr', 'Cc04_g09610' => 'ccan', 'Cc04_g12280' => 'ccan', 'Cc07_g10230' => 'ccan', 'CDE02G0093' => 'cde', 'CDE02G0701' => 'cde', 'CDE04G1050' => 'cde', 'CDE05G1833' => 'cde', 'CDE05G3058' => 'cde', 'CDE05G3380' => 'cde', 'CDE06G0536' => 'cde', 'Cfa006923' => 'cfa', 'Cfa009402' => 'cfa', 'Cfa018751' => 'cfa', 'Cfa019164' => 'cfa', 'Cfa022935' => 'cfa', 'Ciclev10019081m.g' => 'ccl', 'Ciclev10025076m.g' => 'ccl', 'Ciclev10030712m.g' => 'ccl', 'Ciclev10033760m.g' => 'ccl', 'CiPaw.05G105600' => 'cil', 'CiPaw.08G136700' => 'cil', 'CiPaw.11G003900' => 'cil', 'CiPaw.11G023700' => 'cil', 'CiPaw.12G003700' => 'cil', 'ClCG06G017100' => 'cla', 'ClCG06G018110' => 'cla', 'ClCG07G008800' => 'cla', 'ClCG07G015330' => 'cla', 'COL.COLO4_13698' => 'col', 'COL.COLO4_16659' => 'col', 'COL.COLO4_21986' => 'col', 'COL.COLO4_24049' => 'col', 'COL.COLO4_29061' => 'col', 'COL.COLO4_29075' => 'col', 'COL.COLO4_30094' => 'col', 'Cpa.g.c33689' => 'cpa', 'Cpa.g.sc108.39' => 'cpa', 'Cpa.g.sc108.41' => 'cpa', 'Cpa.g.sc1163.1' => 'cpa', 'Cpa.g.sc4.155' => 'cpa', 'Cpa.g.sc6.194' => 'cpa', 'CsaV3_1G000340' => 'csa', 'CsaV3_1G001400' => 'csa', 'CsaV3_4G002220' => 'csa', 'CsaV3_4G005370' => 'csa', 'CSS0007487' => 'camsi', 'CSS0008066' => 'camsi', 'CSS0009120' => 'camsi', 'CSS0015512' => 'camsi', 'CSS0022409' => 'camsi', 'CSS0025358' => 'camsi', 'CSS0044547' => 'camsi', 'DCAR_013057' => 'dca', 'DCAR_015058' => 'dca', 'DCAR_016027' => 'dca', 'DCAR_017327' => 'dca', 'DCAR_020743' => 'dca', 'DCAR_026157' => 'dca', 'DCAR_032339' => 'dca', 'DCAR_032340' => 'dca', 'Dinv11200' => 'din', 'Dinv11201' => 'din', 'Dinv20631' => 'din', 'Dinv23182' => 'din', 'Dinv33466' => 'din', 'Dinv33583' => 'din', 'Dinv38565' => 'din', 'Duzib068G0200' => 'dzi', 'Duzib147G0132' => 'dzi', 'Duzib147G0635' => 'dzi', 'Duzib205G1670' => 'dzi', 'Duzib251G0606' => 'dzi', 'ECA232G3336' => 'eca', 'ECA232G3763' => 'eca', 'ECA232G4845' => 'eca', 'ECA234G1607' => 'eca', 'ECA246G0932' => 'eca', 'ECA247G0781' => 'eca', 'ECA247G1932' => 'eca', 'ECA247G2079' => 'eca', 'ECA247G3338' => 'eca', 'ECA247G4115' => 'eca', 'EL10Ac3g06552' => 'bvu', 'EL10Ac5g10721' => 'bvu', 'EL10Ac5g10722' => 'bvu', 'EL10Ac5g10723' => 'bvu', 'EL10Ac5g11361' => 'bvu', 'EL10Ac6g13553' => 'bvu', 'EL10As8g23872' => 'bvu', 'Eucgr.B00250' => 'egr', 'Eucgr.B00251' => 'egr', 'Eucgr.B03533' => 'egr', 'Eucgr.I02381' => 'egr', 'Eucgr.K02700' => 'egr', 'FAN02G0174' => 'fan', 'FAN02G3146' => 'fan', 'FAN04G1672' => 'fan', 'FAN04G2273' => 'fan', 'FAN05G2791' => 'fan', 'FAN05G4035' => 'fan', 'FAN07G0834' => 'fan', 'FAN08G1198' => 'fan', 'FAN09G4182' => 'fan', 'FAN12G0496' => 'fan', 'FAN13G1027' => 'fan', 'FAN13G2951' => 'fan', 'FAN14G0705' => 'fan', 'FAN14G0720' => 'fan', 'FAN17G0201' => 'fan', 'FAN17G2665' => 'fan', 'FAN18G1456' => 'fan', 'FAN18G1525' => 'fan', 'FAN18G3500' => 'fan', 'FAN28G2670' => 'fan', 'FvH4_1g12391' => 'fve', 'FvH4_4g23220' => 'fve', 'FvH4_5g08810' => 'fve', 'FvH4_5g28960' => 'fve', 'FvH4_6g42820' => 'fve', 'FvH4_6g51110' => 'fve', 'Glyma.02G051802' => 'gma', 'Glyma.04G185300' => 'gma', 'Glyma.05G202900' => 'gma', 'Glyma.08G010300' => 'gma', 'Glyma.16G131900' => 'gma', 'Glyma.17G087900' => 'gma', 'Gohir.A07G048600' => 'ghi', 'Gohir.A11G179000' => 'ghi', 'Gohir.A12G140900' => 'ghi', 'Gohir.A12G140950' => 'ghi', 'Gohir.A12G191700' => 'ghi', 'Gohir.A13G086300' => 'ghi', 'Gohir.D07G052900' => 'ghi', 'Gohir.D11G186600' => 'ghi', 'Gohir.D12G145575' => 'ghi', 'Gohir.D12G145650' => 'ghi', 'Gohir.D12G145725' => 'ghi', 'Gohir.D12G194050' => 'ghi', 'Gohir.D13G091800' => 'ghi', 'Gorai.001G055900' => 'gra', 'Gorai.007G198400' => 'gra', 'Gorai.008G157000' => 'gra', 'Gorai.008G157100' => 'gra', 'Gorai.008G208700' => 'gra', 'Gorai.010G138700' => 'gra', 'GSVIVG01000977001' => 'vvi', 'GSVIVG01007708001' => 'vvi', 'GSVIVG01008587001' => 'vvi', 'GSVIVG01018849001' => 'vvi', 'GSVIVG01032432001' => 'vvi', 'HanXRQChr02g0034131' => 'han', 'HanXRQChr02g0035981' => 'han', 'HanXRQChr02g0035991' => 'han', 'HanXRQChr05g0155611' => 'han', 'HanXRQChr05g0155621' => 'han', 'HanXRQChr08g0236501' => 'han', 'HanXRQChr09g0261321' => 'han', 'HanXRQChr09g0272081' => 'han', 'HanXRQChr10g0310741' => 'han', 'HanXRQChr11g0325591' => 'han', 'HanXRQChr12g0385691' => 'han', 'HanXRQChr13g0387801' => 'han', 'HanXRQChr15g0463011' => 'han', 'Haze_03826' => 'cav', 'Haze_03827' => 'cav', 'Haze_07183' => 'cav', 'Haze_07537' => 'cav', 'Haze_07539' => 'cav', 'Haze_12461' => 'cav', 'Haze_16115' => 'cav', 'Haze_16808' => 'cav', 'Haze_18531' => 'cav', 'Hma1.2p1_0046F.1_g026700' => 'hma', 'Hma1.2p1_0046F.1_g026710' => 'hma', 'Hma1.2p1_0168F.1_g074340' => 'hma', 'Hma1.2p1_0266F.1_g107030' => 'hma', 'Hma1.2p1_0266F.1_g107060' => 'hma', 'Hma1.2p1_0275F.1_g110510' => 'hma', 'Hma1.2p1_0592F.1_g185490' => 'hma', 'Hma1.2p1_0592F.1_g185500' => 'hma', 'Hma1.2p1_0592F.1_g185510' => 'hma', 'Hma1.2p1_0592F.1_g185520' => 'hma', 'Hma1.2p1_0592F.1_g185530' => 'hma', 'Hma1.2p1_0818F.1_g223450' => 'hma', 'HPP92_009708' => 'vpl', 'HPP92_009793' => 'vpl', 'HPP92_009796' => 'vpl', 'HPP92_009797' => 'vpl', 'HPP92_014940' => 'vpl', 'HPP92_014988' => 'vpl', 'Hund02463' => 'sun', 'Hund02760' => 'sun', 'Hund05071' => 'sun', 'Hund10108' => 'sun', 'Hund11204' => 'sun', 'Hund14016' => 'sun', 'Hund16464' => 'sun', 'Lalb_Chr09g0333391' => 'lal', 'Lalb_Chr11g0070461' => 'lal', 'Lalb_Chr12g0201671' => 'lal', 'Lalb_Chr13g0297161' => 'lal', 'Lj1g0002823' => 'lja', 'Lj3C1074T6' => 'lonja', 'Lj4A212T28' => 'lonja', 'Lj4g0005516' => 'lja', 'Lj4g0013705' => 'lja', 'Lj4g0027865' => 'lja', 'Lj5C92G16' => 'lonja', 'Lj5C92T12' => 'lonja', 'Lj7C596T3' => 'lonja', 'Lj9A446G59' => 'lonja', 'Lj9A482G21' => 'lonja', 'Lsat_1_v5_gn_1_28261' => 'lsa', 'Lsat_1_v5_gn_1_28281' => 'lsa', 'Lsat_1_v5_gn_1_32721' => 'lsa', 'Lsat_1_v5_gn_4_151760' => 'lsa', 'Lsat_1_v5_gn_4_2120' => 'lsa', 'Lsat_1_v5_gn_4_75761' => 'lsa', 'Lsat_1_v5_gn_5_10920' => 'lsa', 'Manes.02G099900' => 'mes', 'Manes.11G096200' => 'mes', 'Manes.12G007200' => 'mes', 'Manes.14G048300' => 'mes', 'Manes.17G114700' => 'mes', 'Mapoly0002s0070' => 'mpo', 'Mapoly0029s0099' => 'mpo', 'MBI07_g24742_MAGBIO' => 'mbi', 'MBI10_g27988_MAGBIO' => 'mbi', 'MBI11_g13057_MAGBIO' => 'mbi', 'MD02G1137200' => 'mdo', 'MD06G1137200' => 'mdo', 'MD07G1122300' => 'mdo', 'MD09G1078200' => 'mdo', 'MD13G1123700' => 'mdo', 'MD14G1151900' => 'mdo', 'MD17G1030900' => 'mdo', 'MD17G1068200' => 'mdo', 'MD17G1068600' => 'mdo', 'Medtr3g077540' => 'mtr', 'Medtr4g105530' => 'mtr', 'Medtr8g076580' => 'mtr', 'Medtr8g076590' => 'mtr', 'Medtr8g096410' => 'mtr', 'MELO3C016411.2' => 'cme', 'MELO3C017780.2' => 'cme', 'MELO3C022560.2' => 'cme', 'MELO3C026187.2' => 'cme', 'MELO3C026286.2' => 'cme', 'MELO3C032854.2' => 'cme', 'Migut.H02495' => 'egut', 'Migut.I00561' => 'egut', 'Migut.K01015' => 'egut', 'Migut.K01016' => 'egut', 'Migut.L00743' => 'egut', 'Migut.L00744' => 'egut', 'Migut.L00746' => 'egut', 'Migut.L00798' => 'egut', 'Migut.L00799' => 'egut', 'Migut.N02096' => 'egut', 'MSTRG.11259' => 'ama', 'MSTRG.23142' => 'ama', 'MSTRG.2499' => 'ama', 'Nitab4.5_0000003g0730' => 'nta', 'Nitab4.5_0000137g0020' => 'nta', 'Nitab4.5_0000721g0210' => 'nta', 'Nitab4.5_0000723g0050' => 'nta', 'Nitab4.5_0000913g0070' => 'nta', 'Nitab4.5_0001332g0040' => 'nta', 'Nitab4.5_0001771g0050' => 'nta', 'Nitab4.5_0001918g0050' => 'nta', 'Nitab4.5_0002686g0030' => 'nta', 'Nitab4.5_0003156g0020' => 'nta', 'Nitab4.5_0003383g0040' => 'nta', 'Nitab4.5_0003918g0010' => 'nta', 'Nitab4.5_0006760g0010' => 'nta', 'Nn1g05981' => 'nnu', 'Nn1g06288' => 'nnu', 'Nn3g16371' => 'nnu', 'Nn3g16786' => 'nnu', 'Nn4g22232' => 'nnu', 'Oeu005144.1' => 'oeu', 'Oeu005145.1' => 'oeu', 'Oeu011348.1' => 'oeu', 'Oeu016415.1' => 'oeu', 'Oeu023501.1' => 'oeu', 'Oeu044473.1' => 'oeu', 'Oeu048892.2' => 'oeu', 'Os01g0549200' => 'osa', 'Os02g0469300' => 'osa', 'Os04g0311100' => 'osa', 'Os06g0474900' => 'osa', 'Os10g0181700' => 'osa', 'Os11g0454800' => 'osa', 'Peaxi162Scf00037g00714' => 'pax', 'Peaxi162Scf00084g01217' => 'pax', 'Peaxi162Scf00257g00217' => 'pax', 'Peaxi162Scf00516g00215' => 'pax', 'Peaxi162Scf00689g00123' => 'pax', 'PGR044G2719' => 'pgr', 'PGR083G1360' => 'pgr', 'PGR102G2849' => 'pgr', 'PGR119G2534' => 'pgr', 'PGSC0003DMG400003538' => 'stu', 'PGSC0003DMG400028138' => 'stu', 'PGSC0003DMG400031732' => 'stu', 'PGSC0003DMG400038165' => 'stu', 'Phvul.002G284600' => 'pvu', 'Phvul.003G258200' => 'pvu', 'Phvul.009G176500' => 'pvu', 'Potri.003G167201' => 'ptr', 'Potri.005G118400' => 'ptr', 'Potri.012G089000' => 'ptr', 'Potri.012G102800' => 'ptr', 'Potri.015G079400' => 'ptr', 'Potri.015G100900' => 'ptr', 'Pp3c14_9810' => 'ppa', 'Pp3c15_10450' => 'ppa', 'Pp3c20_19150' => 'ppa', 'Pp3c23_12740' => 'ppa', 'Pp3c23_6310' => 'ppa', 'Pp3c24_3720' => 'ppa', 'Pp3c27_2580' => 'ppa', 'Pp3c9_8990' => 'ppa', 'PRCOL_00002854' => 'pco', 'Prupe.1G221200' => 'ppe', 'Prupe.3G289000' => 'ppe', 'Prupe.5G147000' => 'ppe', 'Prupe.6G157300' => 'ppe', 'Prupe.7G163400' => 'ppe', 'Psat0s2177g0040' => 'psa', 'Psat3g174760' => 'psa', 'Psat3g192160' => 'psa', 'Psat4g058520' => 'psa', 'Psat4g096840' => 'psa', 'Psat7g037320' => 'psa', 'PSO017G1274' => 'pso', 'PSO017G5166' => 'pso', 'PSO063G4558' => 'pso', 'PSO170G4458' => 'pso', 'PSO170G5005' => 'pso', 'PSO210G6156' => 'pso', 'PSO210G6635' => 'pso', 'PSO210G7397' => 'pso', 'PSO210G7700' => 'pso', 'PSO455G0035' => 'pso', 'PSO455G0180' => 'pso', 'PSO478G4515' => 'pso', 'PSO832G1305' => 'pso', 'PSO832G3489' => 'pso', 'QL02p075247' => 'qlo', 'QL03p051148' => 'qlo', 'QL05p010313' => 'qlo', 'QL06p034627' => 'qlo', 'QL10p001889' => 'qlo', 'QL10p010846' => 'qlo', 'RcHm_v2.0_Chr1g0350621' => 'rch', 'RcHm_v2.0_Chr1g0350641' => 'rch', 'RcHm_v2.0_Chr2g0092891' => 'rch', 'RcHm_v2.0_Chr2g0100251' => 'rch', 'RcHm_v2.0_Chr2g0158661' => 'rch', 'RcHm_v2.0_Chr2g0172741' => 'rch', 'RcHm_v2.0_Chr4g0429571' => 'rch', 'RcHm_v2.0_Chr5g0042471' => 'rch', 'RcHm_v2.0_Chr7g0189451' => 'rch', 'Rhsim08G0052000' => 'rsi', 'Rhsim08G0174400' => 'rsi', 'Rhsim08G0193200' => 'rsi', 'Rhsim10G0214800' => 'rsi', 'Rhsim10G0214900' => 'rsi', 'Rhsim10G0215000' => 'rsi', 'Rhsim12G0022900' => 'rsi', 'Rhsim12G0177500' => 'rsi', 'Rhsim12G0177700' => 'rsi', 'Sabra03G0122600' => 'sbr', 'Sabra05G0097400' => 'sbr', 'Sabra12G0064100' => 'sbr', 'Sabra15G0121300' => 'sbr', 'SalBow2G0642' => 'sbo', 'SalBow5G2667' => 'sbo', 'SalBow5G4873' => 'sbo', 'SalBow8G2395' => 'sbo', 'Sc03g0003290' => 'sci', 'Sc10g0010130' => 'sci', 'Sc22g0003650' => 'sci', 'Sed0001603' => 'sed', 'Sed0004259' => 'sed', 'Sed0006789' => 'sed', 'Sed0011838' => 'sed', 'Sed0012964' => 'sed', 'Sed0016383' => 'sed', 'Sed0019010' => 'sed', 'Sed0020188' => 'sed', 'SEGI_04702' => 'sgi', 'SEGI_17231' => 'sgi', 'SEGI_18877' => 'sgi', 'SEGI_25196' => 'sgi', 'SEGI_25515' => 'sgi', 'SEGI_28445' => 'sgi', 'SEGI_37452' => 'sgi', 'SGA_v2.0_scaffold188G40336' => 'sas', 'SGA_v2.0_scaffold228G43247' => 'sas', 'SGA_v2.0_scaffold280G46853' => 'sas', 'SGA_v2.0_scaffold34G13808' => 'sas', 'SGA_v2.0_scaffold40G15576' => 'sas', 'SGA_v2.0_scaffold611G53188' => 'sas', 'SGA_v2.0_scaffold78G25461' => 'sas', 'SGA_v2.0_scaffold90G27888' => 'sas', 'SHI08601' => 'shi', 'SHI08606' => 'shi', 'SHI17117' => 'shi', 'SHI17119' => 'shi', 'SMO118G0201' => 'smo', 'SMO169G0247' => 'smo', 'SMO176G0006' => 'smo', 'SMO176G0015' => 'smo', 'SMO202G0006' => 'smo', 'SMO240G0050' => 'smo', 'SMO286G0009' => 'smo', 'SMO338G0033' => 'smo', 'SMO356G0533' => 'smo', 'SMO364G0382' => 'smo', 'SMO367G0166' => 'smo', 'SMO367G1098' => 'smo', 'Solyc01g009920.3' => 'sly', 'Solyc01g099300.3' => 'sly', 'Solyc02g084700.3' => 'sly', 'Solyc03g097520.3' => 'sly', 'Solyc06g071580.3' => 'sly', 'Solyc10g081760.3' => 'sly', 'Sopen01g005480' => 'spe', 'Sopen01g042850' => 'spe', 'Sopen02g029370' => 'spe', 'Sopen03g028280' => 'spe', 'Sopen06g027870' => 'spe', 'Sopen10g032270' => 'spe', 'Sp5g18180' => 'spa', 'Sp6g12880' => 'spa', 'Sp6g30850' => 'spa', 'Sp7g22960' => 'spa', 'Sp7g34010' => 'spa', 'SpUn1326_0010' => 'spa', 'TAR371G0242' => 'tar', 'TAR622G0638' => 'tar', 'TAR628G1548' => 'tar', 'TAR629G1079' => 'tar', 'TAR629G3413' => 'tar', 'THA.LOC104804249' => 'tha', 'THA.LOC104808315' => 'tha', 'THA.LOC104809238' => 'tha', 'THA.LOC104825484' => 'tha', 'Thecc.01G025500' => 'tca', 'Thecc.03G015800' => 'tca', 'Thecc.03G018000' => 'tca', 'Thecc.03G134800' => 'tca', 'Thecc.04G014700' => 'tca', 'Thhalv10006991m.g' => 'esa', 'Thhalv10012707m.g' => 'esa', 'Thhalv10015739m.g' => 'esa', 'Thhalv10024553m.g' => 'esa', 'Thhalv10024673m.g' => 'esa', 'Thhalv10029187m.g' => 'esa', 'TPR.G12971' => 'tpr', 'TPR.G29396' => 'tpr', 'TPR.G33376' => 'tpr', 'TPR.G35508' => 'tpr', 'TPR.G35516' => 'tpr', 'TPR.G37317' => 'tpr', 'TPR.G37389' => 'tpr', 'TPR.G37523' => 'tpr', 'TPR.G559' => 'tpr', 'TWI14G0070' => 'twi', 'TWI14G0729' => 'twi', 'TWI18G0596' => 'twi', 'TWI39G0780' => 'twi', 'TWI39G0850' => 'twi', 'TWI73G1052' => 'twi', 'unitig_52.g17485' => 'ugi', 'unitig_61.g26355' => 'ugi', 'vmacro01040' => 'vma', 'vmacro16731' => 'vma', 'vmacro18270' => 'vma', 'vmacro19142' => 'vma', 'vmacro19407' => 'vma', 'vmacro19408' => 'vma', 'vmacro21899' => 'vma', 'vmacro21900' => 'vma', 'vmacro21901' => 'vma', 'VMungo0251G0490' => 'vmu', 'VMungo0251G1748' => 'vmu', 'VMungo1309G0421' => 'vmu', 'Zm00001eb086500' => 'zma', 'Zm00001eb150680' => 'zma', 'Zm00001eb162330' => 'zma', 'Zm00001eb203130' => 'zma', 'Zm00001eb369480' => 'zma', 'Zm00001eb382340' => 'zma', 'Zm00001eb416360' => 'zma' ), 'gf_id' => 'HOM05D000902', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000902' ), 'data_identifier' => 'HOM05D000902', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000902', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '663', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02470' => 'bna', 'A01p16260' => 'bna', 'A02p01680' => 'bna', 'A03p16600' => 'bna', 'A03p55660' => 'bna', 'A03p64160' => 'bna', 'A03p64170' => 'bna', 'A08p31900' => 'bna', 'A09p59530' => 'bna', 'A10p08230' => 'bna', 'A10p25090' => 'bna', 'Aa31LG3G7100' => 'aar', 'Aa31LG3G7110' => 'aar', 'Aa31LG6G13160' => 'aar', 'Aa31LG7G10770' => 'aar', 'Aa31LG7G3830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2723' => 'aag', 'Actinidia08045' => 'ach', 'Actinidia08888' => 'ach', 'Actinidia18333' => 'ach', 'Actinidia19334' => 'ach', 'Actinidia25552' => 'ach', 'Actinidia26089' => 'ach', 'Actinidia30615' => 'ach', 'Actinidia30616' => 'ach', 'Actinidia33083' => 'ach', 'Actinidia35762' => 'ach', 'Ah.02g110620' => 'amhyb', 'Ah.11g046390' => 'amhyb', 'AL1G31670' => 'aly', 'AL6G23730' => 'aly', 'AL7G14740' => 'aly', 'AL7G14750' => 'aly', 'AL7G14760' => 'aly', 'AL7G28220' => 'aly', 'AL8G24940' => 'aly', 'Aqoxy3G01665' => 'aox', 'Aqoxy3G02853' => 'aox', 'Aqoxy5G01513' => 'aox', 'Aqoxy5G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8SKA4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ75LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKDA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0LJZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7REX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZP4YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWX7I5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2QKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS0L9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPCD8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q161UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC7XCF' => 'arhy', 'AT1G19100' => 'ath', 'AT4G24970' => 'ath', 'AT4G36270' => 'ath', 'AT4G36280' => 'ath', 'AT4G36290' => 'ath', 'AT5G13130' => 'ath', 'AT5G50780' => 'ath', 'ATR0582G266' => 'atr', 'ATR0661G195' => 'atr', 'ATR1152G031' => 'atr', 'Atru.chr11.2382' => 'acertr', 'Atru.chr12.2337' => 'acertr', 'Atru.chr3.744' => 'acertr', 'Atru.chr6.1870' => 'acertr', 'Atru.chr9.2515' => 'acertr', 'AUR62004120' => 'cqu', 'AUR62005667' => 'cqu', 'AUR62007634' => 'cqu', 'AUR62008186' => 'cqu', 'AUR62008187' => 'cqu', 'AUR62008188' => 'cqu', 'AUR62027954' => 'cqu', 'AUR62028766' => 'cqu', 'AUR62028767' => 'cqu', 'AUR62028768' => 'cqu', 'AUR62028886' => 'cqu', 'AUR62029563' => 'cqu', 'AUR62038832' => 'cqu', 'BcaB01g04149' => 'bca', 'BcaB03g12940' => 'bca', 'BcaB03g13090' => 'bca', 'BcaB03g14466' => 'bca', 'BcaB05g24035' => 'bca', 'BcaC01g06050' => 'bca', 'BcaC04g19148' => 'bca', 'BcaC04g20761' => 'bca', 'BcaC06g32845' => 'bca', 'BcaC07g41274' => 'bca', 'BcaC09g50827' => 'bca', 'BcaNung00741' => 'bca', 'BcaNung00742' => 'bca', 'BcaNung01859' => 'bca', 'BcaNung03985' => 'bca', 'BcaNung03989' => 'bca', 'BcaNung05661' => 'bca', 'BolC1t00257H' => 'bol', 'BolC1t01956H' => 'bol', 'BolC2t06534H' => 'bol', 'BolC3t14334H' => 'bol', 'BolC5t30451H' => 'bol', 'BolC7t45880H' => 'bol', 'BolC7t46586H' => 'bol', 'BolC8t49301H' => 'bol', 'BolC8t51837H' => 'bol', 'BolC9t56822H' => 'bol', 'BolC9t59235H' => 'bol', 'BraA01t00234Z' => 'bra', 'BraA01t01563Z' => 'bra', 'BraA02t05147Z' => 'bra', 'BraA03t10947Z' => 'bra', 'BraA03t14633Z' => 'bra', 'BraA08t35112Z' => 'bra', 'BraA09t41330Z' => 'bra', 'BraA10t44570Z' => 'bra', 'C01p02670' => 'bna', 'C01p20260' => 'bna', 'C02p05890' => 'bna', 'C03p19530' => 'bna', 'C05p17470' => 'bna', 'C07p53900' => 'bna', 'C07p61630' => 'bna', 'C08p16800' => 'bna', 'C08p42810' => 'bna', 'C09p39480' => 'bna', 'C09p63980' => 'bna', 'CAN.G1001.7' => 'can', 'CAN.G1034.55' => 'can', 'CAN.G143.7' => 'can', 'CAN.G3340.1' => 'can', 'CAN.G358.19' => 'can', 'CAN.G373.2' => 'can', 'CAN.G674.16' => 'can', 'CAN.G674.17' => 'can', 'CAN.G674.18' => 'can', 'CAN.G732.2' => 'can', 'CAN.G732.3' => 'can', 'CAN.G993.39' => 'can', 'CANSAT01G2052' => 'cansat', 'CANSAT80G0070' => 'cansat', 'CANSAT80G0483' => 'cansat', 'CANSAT80G0625' => 'cansat', 'CARHR019690' => 'chi', 'CARHR080280' => 'chi', 'CARHR152750' => 'chi', 'CARHR152760' => 'chi', 'CARHR152770' => 'chi', 'CARHR200340' => 'chi', 'CARHR232370' => 'chi', 'CARHR244670' => 'chi', 'CARHR244680' => 'chi', 'CARHR257520' => 'chi', 'Carub.0001s1872' => 'cru', 'Carub.0006s1130' => 'cru', 'Carub.0007s0396' => 'cru', 'Carub.0007s0397' => 'cru', 'Carub.0007s1608' => 'cru', 'Carub.0008s1068' => 'cru', 'Carub.0008s1077' => 'cru', 'Ca_16158_v3' => 'car', 'Ca_17571_v3' => 'car', 'Ca_21936_v3' => 'car', 'Ca_22350_v3' => 'car', 'CBR_g22445' => 'cbr', 'CBR_g26290' => 'cbr', 'Cc04_g09610' => 'ccan', 'Cc04_g12280' => 'ccan', 'Cc07_g10230' => 'ccan', 'CDE02G0093' => 'cde', 'CDE02G0701' => 'cde', 'CDE04G1050' => 'cde', 'CDE05G1833' => 'cde', 'CDE05G3058' => 'cde', 'CDE05G3380' => 'cde', 'CDE06G0536' => 'cde', 'Cfa006923' => 'cfa', 'Cfa009402' => 'cfa', 'Cfa018751' => 'cfa', 'Cfa019164' => 'cfa', 'Cfa022935' => 'cfa', 'Ciclev10019081m.g' => 'ccl', 'Ciclev10025076m.g' => 'ccl', 'Ciclev10030712m.g' => 'ccl', 'Ciclev10033760m.g' => 'ccl', 'CiPaw.05G105600' => 'cil', 'CiPaw.08G136700' => 'cil', 'CiPaw.11G003900' => 'cil', 'CiPaw.11G023700' => 'cil', 'CiPaw.12G003700' => 'cil', 'ClCG06G017100' => 'cla', 'ClCG06G018110' => 'cla', 'ClCG07G008800' => 'cla', 'ClCG07G015330' => 'cla', 'COL.COLO4_13698' => 'col', 'COL.COLO4_16659' => 'col', 'COL.COLO4_21986' => 'col', 'COL.COLO4_24049' => 'col', 'COL.COLO4_29061' => 'col', 'COL.COLO4_29075' => 'col', 'COL.COLO4_30094' => 'col', 'Cpa.g.c33689' => 'cpa', 'Cpa.g.sc108.39' => 'cpa', 'Cpa.g.sc108.41' => 'cpa', 'Cpa.g.sc1163.1' => 'cpa', 'Cpa.g.sc4.155' => 'cpa', 'Cpa.g.sc6.194' => 'cpa', 'CsaV3_1G000340' => 'csa', 'CsaV3_1G001400' => 'csa', 'CsaV3_4G002220' => 'csa', 'CsaV3_4G005370' => 'csa', 'CSS0007487' => 'camsi', 'CSS0008066' => 'camsi', 'CSS0009120' => 'camsi', 'CSS0015512' => 'camsi', 'CSS0022409' => 'camsi', 'CSS0025358' => 'camsi', 'CSS0044547' => 'camsi', 'DCAR_013057' => 'dca', 'DCAR_015058' => 'dca', 'DCAR_016027' => 'dca', 'DCAR_017327' => 'dca', 'DCAR_020743' => 'dca', 'DCAR_026157' => 'dca', 'DCAR_032339' => 'dca', 'DCAR_032340' => 'dca', 'Dinv11200' => 'din', 'Dinv11201' => 'din', 'Dinv20631' => 'din', 'Dinv23182' => 'din', 'Dinv33466' => 'din', 'Dinv33583' => 'din', 'Dinv38565' => 'din', 'Duzib068G0200' => 'dzi', 'Duzib147G0132' => 'dzi', 'Duzib147G0635' => 'dzi', 'Duzib205G1670' => 'dzi', 'Duzib251G0606' => 'dzi', 'ECA232G3336' => 'eca', 'ECA232G3763' => 'eca', 'ECA232G4845' => 'eca', 'ECA234G1607' => 'eca', 'ECA246G0932' => 'eca', 'ECA247G0781' => 'eca', 'ECA247G1932' => 'eca', 'ECA247G2079' => 'eca', 'ECA247G3338' => 'eca', 'ECA247G4115' => 'eca', 'EL10Ac3g06552' => 'bvu', 'EL10Ac5g10721' => 'bvu', 'EL10Ac5g10722' => 'bvu', 'EL10Ac5g10723' => 'bvu', 'EL10Ac5g11361' => 'bvu', 'EL10Ac6g13553' => 'bvu', 'EL10As8g23872' => 'bvu', 'Eucgr.B00250' => 'egr', 'Eucgr.B00251' => 'egr', 'Eucgr.B03533' => 'egr', 'Eucgr.I02381' => 'egr', 'Eucgr.K02700' => 'egr', 'FAN02G0174' => 'fan', 'FAN02G3146' => 'fan', 'FAN04G1672' => 'fan', 'FAN04G2273' => 'fan', 'FAN05G2791' => 'fan', 'FAN05G4035' => 'fan', 'FAN07G0834' => 'fan', 'FAN08G1198' => 'fan', 'FAN09G4182' => 'fan', 'FAN12G0496' => 'fan', 'FAN13G1027' => 'fan', 'FAN13G2951' => 'fan', 'FAN14G0705' => 'fan', 'FAN14G0720' => 'fan', 'FAN17G0201' => 'fan', 'FAN17G2665' => 'fan', 'FAN18G1456' => 'fan', 'FAN18G1525' => 'fan', 'FAN18G3500' => 'fan', 'FAN28G2670' => 'fan', 'FvH4_1g12391' => 'fve', 'FvH4_4g23220' => 'fve', 'FvH4_5g08810' => 'fve', 'FvH4_5g28960' => 'fve', 'FvH4_6g42820' => 'fve', 'FvH4_6g51110' => 'fve', 'Glyma.02G051802' => 'gma', 'Glyma.04G185300' => 'gma', 'Glyma.05G202900' => 'gma', 'Glyma.08G010300' => 'gma', 'Glyma.16G131900' => 'gma', 'Glyma.17G087900' => 'gma', 'Gohir.A07G048600' => 'ghi', 'Gohir.A11G179000' => 'ghi', 'Gohir.A12G140900' => 'ghi', 'Gohir.A12G140950' => 'ghi', 'Gohir.A12G191700' => 'ghi', 'Gohir.A13G086300' => 'ghi', 'Gohir.D07G052900' => 'ghi', 'Gohir.D11G186600' => 'ghi', 'Gohir.D12G145575' => 'ghi', 'Gohir.D12G145650' => 'ghi', 'Gohir.D12G145725' => 'ghi', 'Gohir.D12G194050' => 'ghi', 'Gohir.D13G091800' => 'ghi', 'Gorai.001G055900' => 'gra', 'Gorai.007G198400' => 'gra', 'Gorai.008G157000' => 'gra', 'Gorai.008G157100' => 'gra', 'Gorai.008G208700' => 'gra', 'Gorai.010G138700' => 'gra', 'GSVIVG01000977001' => 'vvi', 'GSVIVG01007708001' => 'vvi', 'GSVIVG01008587001' => 'vvi', 'GSVIVG01018849001' => 'vvi', 'GSVIVG01032432001' => 'vvi', 'HanXRQChr02g0034131' => 'han', 'HanXRQChr02g0035981' => 'han', 'HanXRQChr02g0035991' => 'han', 'HanXRQChr05g0155611' => 'han', 'HanXRQChr05g0155621' => 'han', 'HanXRQChr08g0236501' => 'han', 'HanXRQChr09g0261321' => 'han', 'HanXRQChr09g0272081' => 'han', 'HanXRQChr10g0310741' => 'han', 'HanXRQChr11g0325591' => 'han', 'HanXRQChr12g0385691' => 'han', 'HanXRQChr13g0387801' => 'han', 'HanXRQChr15g0463011' => 'han', 'Haze_03826' => 'cav', 'Haze_03827' => 'cav', 'Haze_07183' => 'cav', 'Haze_07537' => 'cav', 'Haze_07539' => 'cav', 'Haze_12461' => 'cav', 'Haze_16115' => 'cav', 'Haze_16808' => 'cav', 'Haze_18531' => 'cav', 'Hma1.2p1_0046F.1_g026700' => 'hma', 'Hma1.2p1_0046F.1_g026710' => 'hma', 'Hma1.2p1_0168F.1_g074340' => 'hma', 'Hma1.2p1_0266F.1_g107030' => 'hma', 'Hma1.2p1_0266F.1_g107060' => 'hma', 'Hma1.2p1_0275F.1_g110510' => 'hma', 'Hma1.2p1_0592F.1_g185490' => 'hma', 'Hma1.2p1_0592F.1_g185500' => 'hma', 'Hma1.2p1_0592F.1_g185510' => 'hma', 'Hma1.2p1_0592F.1_g185520' => 'hma', 'Hma1.2p1_0592F.1_g185530' => 'hma', 'Hma1.2p1_0818F.1_g223450' => 'hma', 'HPP92_009708' => 'vpl', 'HPP92_009793' => 'vpl', 'HPP92_009796' => 'vpl', 'HPP92_009797' => 'vpl', 'HPP92_014940' => 'vpl', 'HPP92_014988' => 'vpl', 'Hund02463' => 'sun', 'Hund02760' => 'sun', 'Hund05071' => 'sun', 'Hund10108' => 'sun', 'Hund11204' => 'sun', 'Hund14016' => 'sun', 'Hund16464' => 'sun', 'Lalb_Chr09g0333391' => 'lal', 'Lalb_Chr11g0070461' => 'lal', 'Lalb_Chr12g0201671' => 'lal', 'Lalb_Chr13g0297161' => 'lal', 'Lj1g0002823' => 'lja', 'Lj3C1074T6' => 'lonja', 'Lj4A212T28' => 'lonja', 'Lj4g0005516' => 'lja', 'Lj4g0013705' => 'lja', 'Lj4g0027865' => 'lja', 'Lj5C92G16' => 'lonja', 'Lj5C92T12' => 'lonja', 'Lj7C596T3' => 'lonja', 'Lj9A446G59' => 'lonja', 'Lj9A482G21' => 'lonja', 'Lsat_1_v5_gn_1_28261' => 'lsa', 'Lsat_1_v5_gn_1_28281' => 'lsa', 'Lsat_1_v5_gn_1_32721' => 'lsa', 'Lsat_1_v5_gn_4_151760' => 'lsa', 'Lsat_1_v5_gn_4_2120' => 'lsa', 'Lsat_1_v5_gn_4_75761' => 'lsa', 'Lsat_1_v5_gn_5_10920' => 'lsa', 'Manes.02G099900' => 'mes', 'Manes.11G096200' => 'mes', 'Manes.12G007200' => 'mes', 'Manes.14G048300' => 'mes', 'Manes.17G114700' => 'mes', 'Mapoly0002s0070' => 'mpo', 'Mapoly0029s0099' => 'mpo', 'MBI07_g24742_MAGBIO' => 'mbi', 'MBI10_g27988_MAGBIO' => 'mbi', 'MBI11_g13057_MAGBIO' => 'mbi', 'MD02G1137200' => 'mdo', 'MD06G1137200' => 'mdo', 'MD07G1122300' => 'mdo', 'MD09G1078200' => 'mdo', 'MD13G1123700' => 'mdo', 'MD14G1151900' => 'mdo', 'MD17G1030900' => 'mdo', 'MD17G1068200' => 'mdo', 'MD17G1068600' => 'mdo', 'Medtr3g077540' => 'mtr', 'Medtr4g105530' => 'mtr', 'Medtr8g076580' => 'mtr', 'Medtr8g076590' => 'mtr', 'Medtr8g096410' => 'mtr', 'MELO3C016411.2' => 'cme', 'MELO3C017780.2' => 'cme', 'MELO3C022560.2' => 'cme', 'MELO3C026187.2' => 'cme', 'MELO3C026286.2' => 'cme', 'MELO3C032854.2' => 'cme', 'Migut.H02495' => 'egut', 'Migut.I00561' => 'egut', 'Migut.K01015' => 'egut', 'Migut.K01016' => 'egut', 'Migut.L00743' => 'egut', 'Migut.L00744' => 'egut', 'Migut.L00746' => 'egut', 'Migut.L00798' => 'egut', 'Migut.L00799' => 'egut', 'Migut.N02096' => 'egut', 'MSTRG.11259' => 'ama', 'MSTRG.23142' => 'ama', 'MSTRG.2499' => 'ama', 'Nitab4.5_0000003g0730' => 'nta', 'Nitab4.5_0000137g0020' => 'nta', 'Nitab4.5_0000721g0210' => 'nta', 'Nitab4.5_0000723g0050' => 'nta', 'Nitab4.5_0000913g0070' => 'nta', 'Nitab4.5_0001332g0040' => 'nta', 'Nitab4.5_0001771g0050' => 'nta', 'Nitab4.5_0001918g0050' => 'nta', 'Nitab4.5_0002686g0030' => 'nta', 'Nitab4.5_0003156g0020' => 'nta', 'Nitab4.5_0003383g0040' => 'nta', 'Nitab4.5_0003918g0010' => 'nta', 'Nitab4.5_0006760g0010' => 'nta', 'Nn1g05981' => 'nnu', 'Nn1g06288' => 'nnu', 'Nn3g16371' => 'nnu', 'Nn3g16786' => 'nnu', 'Nn4g22232' => 'nnu', 'Oeu005144.1' => 'oeu', 'Oeu005145.1' => 'oeu', 'Oeu011348.1' => 'oeu', 'Oeu016415.1' => 'oeu', 'Oeu023501.1' => 'oeu', 'Oeu044473.1' => 'oeu', 'Oeu048892.2' => 'oeu', 'Os01g0549200' => 'osa', 'Os02g0469300' => 'osa', 'Os04g0311100' => 'osa', 'Os06g0474900' => 'osa', 'Os10g0181700' => 'osa', 'Os11g0454800' => 'osa', 'Peaxi162Scf00037g00714' => 'pax', 'Peaxi162Scf00084g01217' => 'pax', 'Peaxi162Scf00257g00217' => 'pax', 'Peaxi162Scf00516g00215' => 'pax', 'Peaxi162Scf00689g00123' => 'pax', 'PGR044G2719' => 'pgr', 'PGR083G1360' => 'pgr', 'PGR102G2849' => 'pgr', 'PGR119G2534' => 'pgr', 'PGSC0003DMG400003538' => 'stu', 'PGSC0003DMG400028138' => 'stu', 'PGSC0003DMG400031732' => 'stu', 'PGSC0003DMG400038165' => 'stu', 'Phvul.002G284600' => 'pvu', 'Phvul.003G258200' => 'pvu', 'Phvul.009G176500' => 'pvu', 'Potri.003G167201' => 'ptr', 'Potri.005G118400' => 'ptr', 'Potri.012G089000' => 'ptr', 'Potri.012G102800' => 'ptr', 'Potri.015G079400' => 'ptr', 'Potri.015G100900' => 'ptr', 'Pp3c14_9810' => 'ppa', 'Pp3c15_10450' => 'ppa', 'Pp3c20_19150' => 'ppa', 'Pp3c23_12740' => 'ppa', 'Pp3c23_6310' => 'ppa', 'Pp3c24_3720' => 'ppa', 'Pp3c27_2580' => 'ppa', 'Pp3c9_8990' => 'ppa', 'PRCOL_00002854' => 'pco', 'Prupe.1G221200' => 'ppe', 'Prupe.3G289000' => 'ppe', 'Prupe.5G147000' => 'ppe', 'Prupe.6G157300' => 'ppe', 'Prupe.7G163400' => 'ppe', 'Psat0s2177g0040' => 'psa', 'Psat3g174760' => 'psa', 'Psat3g192160' => 'psa', 'Psat4g058520' => 'psa', 'Psat4g096840' => 'psa', 'Psat7g037320' => 'psa', 'PSO017G1274' => 'pso', 'PSO017G5166' => 'pso', 'PSO063G4558' => 'pso', 'PSO170G4458' => 'pso', 'PSO170G5005' => 'pso', 'PSO210G6156' => 'pso', 'PSO210G6635' => 'pso', 'PSO210G7397' => 'pso', 'PSO210G7700' => 'pso', 'PSO455G0035' => 'pso', 'PSO455G0180' => 'pso', 'PSO478G4515' => 'pso', 'PSO832G1305' => 'pso', 'PSO832G3489' => 'pso', 'QL02p075247' => 'qlo', 'QL03p051148' => 'qlo', 'QL05p010313' => 'qlo', 'QL06p034627' => 'qlo', 'QL10p001889' => 'qlo', 'QL10p010846' => 'qlo', 'RcHm_v2.0_Chr1g0350621' => 'rch', 'RcHm_v2.0_Chr1g0350641' => 'rch', 'RcHm_v2.0_Chr2g0092891' => 'rch', 'RcHm_v2.0_Chr2g0100251' => 'rch', 'RcHm_v2.0_Chr2g0158661' => 'rch', 'RcHm_v2.0_Chr2g0172741' => 'rch', 'RcHm_v2.0_Chr4g0429571' => 'rch', 'RcHm_v2.0_Chr5g0042471' => 'rch', 'RcHm_v2.0_Chr7g0189451' => 'rch', 'Rhsim08G0052000' => 'rsi', 'Rhsim08G0174400' => 'rsi', 'Rhsim08G0193200' => 'rsi', 'Rhsim10G0214800' => 'rsi', 'Rhsim10G0214900' => 'rsi', 'Rhsim10G0215000' => 'rsi', 'Rhsim12G0022900' => 'rsi', 'Rhsim12G0177500' => 'rsi', 'Rhsim12G0177700' => 'rsi', 'Sabra03G0122600' => 'sbr', 'Sabra05G0097400' => 'sbr', 'Sabra12G0064100' => 'sbr', 'Sabra15G0121300' => 'sbr', 'SalBow2G0642' => 'sbo', 'SalBow5G2667' => 'sbo', 'SalBow5G4873' => 'sbo', 'SalBow8G2395' => 'sbo', 'Sc03g0003290' => 'sci', 'Sc10g0010130' => 'sci', 'Sc22g0003650' => 'sci', 'Sed0001603' => 'sed', 'Sed0004259' => 'sed', 'Sed0006789' => 'sed', 'Sed0011838' => 'sed', 'Sed0012964' => 'sed', 'Sed0016383' => 'sed', 'Sed0019010' => 'sed', 'Sed0020188' => 'sed', 'SEGI_04702' => 'sgi', 'SEGI_17231' => 'sgi', 'SEGI_18877' => 'sgi', 'SEGI_25196' => 'sgi', 'SEGI_25515' => 'sgi', 'SEGI_28445' => 'sgi', 'SEGI_37452' => 'sgi', 'SGA_v2.0_scaffold188G40336' => 'sas', 'SGA_v2.0_scaffold228G43247' => 'sas', 'SGA_v2.0_scaffold280G46853' => 'sas', 'SGA_v2.0_scaffold34G13808' => 'sas', 'SGA_v2.0_scaffold40G15576' => 'sas', 'SGA_v2.0_scaffold611G53188' => 'sas', 'SGA_v2.0_scaffold78G25461' => 'sas', 'SGA_v2.0_scaffold90G27888' => 'sas', 'SHI08601' => 'shi', 'SHI08606' => 'shi', 'SHI17117' => 'shi', 'SHI17119' => 'shi', 'SMO118G0201' => 'smo', 'SMO169G0247' => 'smo', 'SMO176G0006' => 'smo', 'SMO176G0015' => 'smo', 'SMO202G0006' => 'smo', 'SMO240G0050' => 'smo', 'SMO286G0009' => 'smo', 'SMO338G0033' => 'smo', 'SMO356G0533' => 'smo', 'SMO364G0382' => 'smo', 'SMO367G0166' => 'smo', 'SMO367G1098' => 'smo', 'Solyc01g009920.3' => 'sly', 'Solyc01g099300.3' => 'sly', 'Solyc02g084700.3' => 'sly', 'Solyc03g097520.3' => 'sly', 'Solyc06g071580.3' => 'sly', 'Solyc10g081760.3' => 'sly', 'Sopen01g005480' => 'spe', 'Sopen01g042850' => 'spe', 'Sopen02g029370' => 'spe', 'Sopen03g028280' => 'spe', 'Sopen06g027870' => 'spe', 'Sopen10g032270' => 'spe', 'Sp5g18180' => 'spa', 'Sp6g12880' => 'spa', 'Sp6g30850' => 'spa', 'Sp7g22960' => 'spa', 'Sp7g34010' => 'spa', 'SpUn1326_0010' => 'spa', 'TAR371G0242' => 'tar', 'TAR622G0638' => 'tar', 'TAR628G1548' => 'tar', 'TAR629G1079' => 'tar', 'TAR629G3413' => 'tar', 'THA.LOC104804249' => 'tha', 'THA.LOC104808315' => 'tha', 'THA.LOC104809238' => 'tha', 'THA.LOC104825484' => 'tha', 'Thecc.01G025500' => 'tca', 'Thecc.03G015800' => 'tca', 'Thecc.03G018000' => 'tca', 'Thecc.03G134800' => 'tca', 'Thecc.04G014700' => 'tca', 'Thhalv10006991m.g' => 'esa', 'Thhalv10012707m.g' => 'esa', 'Thhalv10015739m.g' => 'esa', 'Thhalv10024553m.g' => 'esa', 'Thhalv10024673m.g' => 'esa', 'Thhalv10029187m.g' => 'esa', 'TPR.G12971' => 'tpr', 'TPR.G29396' => 'tpr', 'TPR.G33376' => 'tpr', 'TPR.G35508' => 'tpr', 'TPR.G35516' => 'tpr', 'TPR.G37317' => 'tpr', 'TPR.G37389' => 'tpr', 'TPR.G37523' => 'tpr', 'TPR.G559' => 'tpr', 'TWI14G0070' => 'twi', 'TWI14G0729' => 'twi', 'TWI18G0596' => 'twi', 'TWI39G0780' => 'twi', 'TWI39G0850' => 'twi', 'TWI73G1052' => 'twi', 'unitig_52.g17485' => 'ugi', 'unitig_61.g26355' => 'ugi', 'vmacro01040' => 'vma', 'vmacro16731' => 'vma', 'vmacro18270' => 'vma', 'vmacro19142' => 'vma', 'vmacro19407' => 'vma', 'vmacro19408' => 'vma', 'vmacro21899' => 'vma', 'vmacro21900' => 'vma', 'vmacro21901' => 'vma', 'VMungo0251G0490' => 'vmu', 'VMungo0251G1748' => 'vmu', 'VMungo1309G0421' => 'vmu', 'Zm00001eb086500' => 'zma', 'Zm00001eb150680' => 'zma', 'Zm00001eb162330' => 'zma', 'Zm00001eb203130' => 'zma', 'Zm00001eb369480' => 'zma', 'Zm00001eb382340' => 'zma', 'Zm00001eb416360' => 'zma' ) $gf_id = 'HOM05D000902' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000902' ) $data_identifier = 'HOM05D000902' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 13, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 10, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 6, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 9, 'hma' => (int) 12, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 4, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 6, 'ppa' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 6, 'rch' => (int) 9, 'rsi' => (int) 9, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 12, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 3, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416360' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000902', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '663', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02470' => 'bna', 'A01p16260' => 'bna', 'A02p01680' => 'bna', 'A03p16600' => 'bna', 'A03p55660' => 'bna', 'A03p64160' => 'bna', 'A03p64170' => 'bna', 'A08p31900' => 'bna', 'A09p59530' => 'bna', 'A10p08230' => 'bna', 'A10p25090' => 'bna', 'Aa31LG3G7100' => 'aar', 'Aa31LG3G7110' => 'aar', 'Aa31LG6G13160' => 'aar', 'Aa31LG7G10770' => 'aar', 'Aa31LG7G3830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2723' => 'aag', 'Actinidia08045' => 'ach', 'Actinidia08888' => 'ach', 'Actinidia18333' => 'ach', 'Actinidia19334' => 'ach', 'Actinidia25552' => 'ach', 'Actinidia26089' => 'ach', 'Actinidia30615' => 'ach', 'Actinidia30616' => 'ach', 'Actinidia33083' => 'ach', 'Actinidia35762' => 'ach', 'Ah.02g110620' => 'amhyb', 'Ah.11g046390' => 'amhyb', 'AL1G31670' => 'aly', 'AL6G23730' => 'aly', 'AL7G14740' => 'aly', 'AL7G14750' => 'aly', 'AL7G14760' => 'aly', 'AL7G28220' => 'aly', 'AL8G24940' => 'aly', 'Aqoxy3G01665' => 'aox', 'Aqoxy3G02853' => 'aox', 'Aqoxy5G01513' => 'aox', 'Aqoxy5G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8SKA4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ75LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKDA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0LJZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7REX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZP4YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWX7I5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2QKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS0L9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPCD8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q161UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC7XCF' => 'arhy', 'AT1G19100' => 'ath', 'AT4G24970' => 'ath', 'AT4G36270' => 'ath', 'AT4G36280' => 'ath', 'AT4G36290' => 'ath', 'AT5G13130' => 'ath', 'AT5G50780' => 'ath', 'ATR0582G266' => 'atr', 'ATR0661G195' => 'atr', 'ATR1152G031' => 'atr', 'Atru.chr11.2382' => 'acertr', 'Atru.chr12.2337' => 'acertr', 'Atru.chr3.744' => 'acertr', 'Atru.chr6.1870' => 'acertr', 'Atru.chr9.2515' => 'acertr', 'AUR62004120' => 'cqu', 'AUR62005667' => 'cqu', 'AUR62007634' => 'cqu', 'AUR62008186' => 'cqu', 'AUR62008187' => 'cqu', 'AUR62008188' => 'cqu', 'AUR62027954' => 'cqu', 'AUR62028766' => 'cqu', 'AUR62028767' => 'cqu', 'AUR62028768' => 'cqu', 'AUR62028886' => 'cqu', 'AUR62029563' => 'cqu', 'AUR62038832' => 'cqu', 'BcaB01g04149' => 'bca', 'BcaB03g12940' => 'bca', 'BcaB03g13090' => 'bca', 'BcaB03g14466' => 'bca', 'BcaB05g24035' => 'bca', 'BcaC01g06050' => 'bca', 'BcaC04g19148' => 'bca', 'BcaC04g20761' => 'bca', 'BcaC06g32845' => 'bca', 'BcaC07g41274' => 'bca', 'BcaC09g50827' => 'bca', 'BcaNung00741' => 'bca', 'BcaNung00742' => 'bca', 'BcaNung01859' => 'bca', 'BcaNung03985' => 'bca', 'BcaNung03989' => 'bca', 'BcaNung05661' => 'bca', 'BolC1t00257H' => 'bol', 'BolC1t01956H' => 'bol', 'BolC2t06534H' => 'bol', 'BolC3t14334H' => 'bol', 'BolC5t30451H' => 'bol', 'BolC7t45880H' => 'bol', 'BolC7t46586H' => 'bol', 'BolC8t49301H' => 'bol', 'BolC8t51837H' => 'bol', 'BolC9t56822H' => 'bol', 'BolC9t59235H' => 'bol', 'BraA01t00234Z' => 'bra', 'BraA01t01563Z' => 'bra', 'BraA02t05147Z' => 'bra', 'BraA03t10947Z' => 'bra', 'BraA03t14633Z' => 'bra', 'BraA08t35112Z' => 'bra', 'BraA09t41330Z' => 'bra', 'BraA10t44570Z' => 'bra', 'C01p02670' => 'bna', 'C01p20260' => 'bna', 'C02p05890' => 'bna', 'C03p19530' => 'bna', 'C05p17470' => 'bna', 'C07p53900' => 'bna', 'C07p61630' => 'bna', 'C08p16800' => 'bna', 'C08p42810' => 'bna', 'C09p39480' => 'bna', 'C09p63980' => 'bna', 'CAN.G1001.7' => 'can', 'CAN.G1034.55' => 'can', 'CAN.G143.7' => 'can', 'CAN.G3340.1' => 'can', 'CAN.G358.19' => 'can', 'CAN.G373.2' => 'can', 'CAN.G674.16' => 'can', 'CAN.G674.17' => 'can', 'CAN.G674.18' => 'can', 'CAN.G732.2' => 'can', 'CAN.G732.3' => 'can', 'CAN.G993.39' => 'can', 'CANSAT01G2052' => 'cansat', 'CANSAT80G0070' => 'cansat', 'CANSAT80G0483' => 'cansat', 'CANSAT80G0625' => 'cansat', 'CARHR019690' => 'chi', 'CARHR080280' => 'chi', 'CARHR152750' => 'chi', 'CARHR152760' => 'chi', 'CARHR152770' => 'chi', 'CARHR200340' => 'chi', 'CARHR232370' => 'chi', 'CARHR244670' => 'chi', 'CARHR244680' => 'chi', 'CARHR257520' => 'chi', 'Carub.0001s1872' => 'cru', 'Carub.0006s1130' => 'cru', 'Carub.0007s0396' => 'cru', 'Carub.0007s0397' => 'cru', 'Carub.0007s1608' => 'cru', 'Carub.0008s1068' => 'cru', 'Carub.0008s1077' => 'cru', 'Ca_16158_v3' => 'car', 'Ca_17571_v3' => 'car', 'Ca_21936_v3' => 'car', 'Ca_22350_v3' => 'car', 'CBR_g22445' => 'cbr', 'CBR_g26290' => 'cbr', 'Cc04_g09610' => 'ccan', 'Cc04_g12280' => 'ccan', 'Cc07_g10230' => 'ccan', 'CDE02G0093' => 'cde', 'CDE02G0701' => 'cde', 'CDE04G1050' => 'cde', 'CDE05G1833' => 'cde', 'CDE05G3058' => 'cde', 'CDE05G3380' => 'cde', 'CDE06G0536' => 'cde', 'Cfa006923' => 'cfa', 'Cfa009402' => 'cfa', 'Cfa018751' => 'cfa', 'Cfa019164' => 'cfa', 'Cfa022935' => 'cfa', 'Ciclev10019081m.g' => 'ccl', 'Ciclev10025076m.g' => 'ccl', 'Ciclev10030712m.g' => 'ccl', 'Ciclev10033760m.g' => 'ccl', 'CiPaw.05G105600' => 'cil', 'CiPaw.08G136700' => 'cil', 'CiPaw.11G003900' => 'cil', 'CiPaw.11G023700' => 'cil', 'CiPaw.12G003700' => 'cil', 'ClCG06G017100' => 'cla', 'ClCG06G018110' => 'cla', 'ClCG07G008800' => 'cla', 'ClCG07G015330' => 'cla', 'COL.COLO4_13698' => 'col', 'COL.COLO4_16659' => 'col', 'COL.COLO4_21986' => 'col', 'COL.COLO4_24049' => 'col', 'COL.COLO4_29061' => 'col', 'COL.COLO4_29075' => 'col', 'COL.COLO4_30094' => 'col', 'Cpa.g.c33689' => 'cpa', 'Cpa.g.sc108.39' => 'cpa', 'Cpa.g.sc108.41' => 'cpa', 'Cpa.g.sc1163.1' => 'cpa', 'Cpa.g.sc4.155' => 'cpa', 'Cpa.g.sc6.194' => 'cpa', 'CsaV3_1G000340' => 'csa', 'CsaV3_1G001400' => 'csa', 'CsaV3_4G002220' => 'csa', 'CsaV3_4G005370' => 'csa', 'CSS0007487' => 'camsi', 'CSS0008066' => 'camsi', 'CSS0009120' => 'camsi', 'CSS0015512' => 'camsi', 'CSS0022409' => 'camsi', 'CSS0025358' => 'camsi', 'CSS0044547' => 'camsi', 'DCAR_013057' => 'dca', 'DCAR_015058' => 'dca', 'DCAR_016027' => 'dca', 'DCAR_017327' => 'dca', 'DCAR_020743' => 'dca', 'DCAR_026157' => 'dca', 'DCAR_032339' => 'dca', 'DCAR_032340' => 'dca', 'Dinv11200' => 'din', 'Dinv11201' => 'din', 'Dinv20631' => 'din', 'Dinv23182' => 'din', 'Dinv33466' => 'din', 'Dinv33583' => 'din', 'Dinv38565' => 'din', 'Duzib068G0200' => 'dzi', 'Duzib147G0132' => 'dzi', 'Duzib147G0635' => 'dzi', 'Duzib205G1670' => 'dzi', 'Duzib251G0606' => 'dzi', 'ECA232G3336' => 'eca', 'ECA232G3763' => 'eca', 'ECA232G4845' => 'eca', 'ECA234G1607' => 'eca', 'ECA246G0932' => 'eca', 'ECA247G0781' => 'eca', 'ECA247G1932' => 'eca', 'ECA247G2079' => 'eca', 'ECA247G3338' => 'eca', 'ECA247G4115' => 'eca', 'EL10Ac3g06552' => 'bvu', 'EL10Ac5g10721' => 'bvu', 'EL10Ac5g10722' => 'bvu', 'EL10Ac5g10723' => 'bvu', 'EL10Ac5g11361' => 'bvu', 'EL10Ac6g13553' => 'bvu', 'EL10As8g23872' => 'bvu', 'Eucgr.B00250' => 'egr', 'Eucgr.B00251' => 'egr', 'Eucgr.B03533' => 'egr', 'Eucgr.I02381' => 'egr', 'Eucgr.K02700' => 'egr', 'FAN02G0174' => 'fan', 'FAN02G3146' => 'fan', 'FAN04G1672' => 'fan', 'FAN04G2273' => 'fan', 'FAN05G2791' => 'fan', 'FAN05G4035' => 'fan', 'FAN07G0834' => 'fan', 'FAN08G1198' => 'fan', 'FAN09G4182' => 'fan', 'FAN12G0496' => 'fan', 'FAN13G1027' => 'fan', 'FAN13G2951' => 'fan', 'FAN14G0705' => 'fan', 'FAN14G0720' => 'fan', 'FAN17G0201' => 'fan', 'FAN17G2665' => 'fan', 'FAN18G1456' => 'fan', 'FAN18G1525' => 'fan', 'FAN18G3500' => 'fan', 'FAN28G2670' => 'fan', 'FvH4_1g12391' => 'fve', 'FvH4_4g23220' => 'fve', 'FvH4_5g08810' => 'fve', 'FvH4_5g28960' => 'fve', 'FvH4_6g42820' => 'fve', 'FvH4_6g51110' => 'fve', 'Glyma.02G051802' => 'gma', 'Glyma.04G185300' => 'gma', 'Glyma.05G202900' => 'gma', 'Glyma.08G010300' => 'gma', 'Glyma.16G131900' => 'gma', 'Glyma.17G087900' => 'gma', 'Gohir.A07G048600' => 'ghi', 'Gohir.A11G179000' => 'ghi', 'Gohir.A12G140900' => 'ghi', 'Gohir.A12G140950' => 'ghi', 'Gohir.A12G191700' => 'ghi', 'Gohir.A13G086300' => 'ghi', 'Gohir.D07G052900' => 'ghi', 'Gohir.D11G186600' => 'ghi', 'Gohir.D12G145575' => 'ghi', 'Gohir.D12G145650' => 'ghi', 'Gohir.D12G145725' => 'ghi', 'Gohir.D12G194050' => 'ghi', 'Gohir.D13G091800' => 'ghi', 'Gorai.001G055900' => 'gra', 'Gorai.007G198400' => 'gra', 'Gorai.008G157000' => 'gra', 'Gorai.008G157100' => 'gra', 'Gorai.008G208700' => 'gra', 'Gorai.010G138700' => 'gra', 'GSVIVG01000977001' => 'vvi', 'GSVIVG01007708001' => 'vvi', 'GSVIVG01008587001' => 'vvi', 'GSVIVG01018849001' => 'vvi', 'GSVIVG01032432001' => 'vvi', 'HanXRQChr02g0034131' => 'han', 'HanXRQChr02g0035981' => 'han', 'HanXRQChr02g0035991' => 'han', 'HanXRQChr05g0155611' => 'han', 'HanXRQChr05g0155621' => 'han', 'HanXRQChr08g0236501' => 'han', 'HanXRQChr09g0261321' => 'han', 'HanXRQChr09g0272081' => 'han', 'HanXRQChr10g0310741' => 'han', 'HanXRQChr11g0325591' => 'han', 'HanXRQChr12g0385691' => 'han', 'HanXRQChr13g0387801' => 'han', 'HanXRQChr15g0463011' => 'han', 'Haze_03826' => 'cav', 'Haze_03827' => 'cav', 'Haze_07183' => 'cav', 'Haze_07537' => 'cav', 'Haze_07539' => 'cav', 'Haze_12461' => 'cav', 'Haze_16115' => 'cav', 'Haze_16808' => 'cav', 'Haze_18531' => 'cav', 'Hma1.2p1_0046F.1_g026700' => 'hma', 'Hma1.2p1_0046F.1_g026710' => 'hma', 'Hma1.2p1_0168F.1_g074340' => 'hma', 'Hma1.2p1_0266F.1_g107030' => 'hma', 'Hma1.2p1_0266F.1_g107060' => 'hma', 'Hma1.2p1_0275F.1_g110510' => 'hma', 'Hma1.2p1_0592F.1_g185490' => 'hma', 'Hma1.2p1_0592F.1_g185500' => 'hma', 'Hma1.2p1_0592F.1_g185510' => 'hma', 'Hma1.2p1_0592F.1_g185520' => 'hma', 'Hma1.2p1_0592F.1_g185530' => 'hma', 'Hma1.2p1_0818F.1_g223450' => 'hma', 'HPP92_009708' => 'vpl', 'HPP92_009793' => 'vpl', 'HPP92_009796' => 'vpl', 'HPP92_009797' => 'vpl', 'HPP92_014940' => 'vpl', 'HPP92_014988' => 'vpl', 'Hund02463' => 'sun', 'Hund02760' => 'sun', 'Hund05071' => 'sun', 'Hund10108' => 'sun', 'Hund11204' => 'sun', 'Hund14016' => 'sun', 'Hund16464' => 'sun', 'Lalb_Chr09g0333391' => 'lal', 'Lalb_Chr11g0070461' => 'lal', 'Lalb_Chr12g0201671' => 'lal', 'Lalb_Chr13g0297161' => 'lal', 'Lj1g0002823' => 'lja', 'Lj3C1074T6' => 'lonja', 'Lj4A212T28' => 'lonja', 'Lj4g0005516' => 'lja', 'Lj4g0013705' => 'lja', 'Lj4g0027865' => 'lja', 'Lj5C92G16' => 'lonja', 'Lj5C92T12' => 'lonja', 'Lj7C596T3' => 'lonja', 'Lj9A446G59' => 'lonja', 'Lj9A482G21' => 'lonja', 'Lsat_1_v5_gn_1_28261' => 'lsa', 'Lsat_1_v5_gn_1_28281' => 'lsa', 'Lsat_1_v5_gn_1_32721' => 'lsa', 'Lsat_1_v5_gn_4_151760' => 'lsa', 'Lsat_1_v5_gn_4_2120' => 'lsa', 'Lsat_1_v5_gn_4_75761' => 'lsa', 'Lsat_1_v5_gn_5_10920' => 'lsa', 'Manes.02G099900' => 'mes', 'Manes.11G096200' => 'mes', 'Manes.12G007200' => 'mes', 'Manes.14G048300' => 'mes', 'Manes.17G114700' => 'mes', 'Mapoly0002s0070' => 'mpo', 'Mapoly0029s0099' => 'mpo', 'MBI07_g24742_MAGBIO' => 'mbi', 'MBI10_g27988_MAGBIO' => 'mbi', 'MBI11_g13057_MAGBIO' => 'mbi', 'MD02G1137200' => 'mdo', 'MD06G1137200' => 'mdo', 'MD07G1122300' => 'mdo', 'MD09G1078200' => 'mdo', 'MD13G1123700' => 'mdo', 'MD14G1151900' => 'mdo', 'MD17G1030900' => 'mdo', 'MD17G1068200' => 'mdo', 'MD17G1068600' => 'mdo', 'Medtr3g077540' => 'mtr', 'Medtr4g105530' => 'mtr', 'Medtr8g076580' => 'mtr', 'Medtr8g076590' => 'mtr', 'Medtr8g096410' => 'mtr', 'MELO3C016411.2' => 'cme', 'MELO3C017780.2' => 'cme', 'MELO3C022560.2' => 'cme', 'MELO3C026187.2' => 'cme', 'MELO3C026286.2' => 'cme', 'MELO3C032854.2' => 'cme', 'Migut.H02495' => 'egut', 'Migut.I00561' => 'egut', 'Migut.K01015' => 'egut', 'Migut.K01016' => 'egut', 'Migut.L00743' => 'egut', 'Migut.L00744' => 'egut', 'Migut.L00746' => 'egut', 'Migut.L00798' => 'egut', 'Migut.L00799' => 'egut', 'Migut.N02096' => 'egut', 'MSTRG.11259' => 'ama', 'MSTRG.23142' => 'ama', 'MSTRG.2499' => 'ama', 'Nitab4.5_0000003g0730' => 'nta', 'Nitab4.5_0000137g0020' => 'nta', 'Nitab4.5_0000721g0210' => 'nta', 'Nitab4.5_0000723g0050' => 'nta', 'Nitab4.5_0000913g0070' => 'nta', 'Nitab4.5_0001332g0040' => 'nta', 'Nitab4.5_0001771g0050' => 'nta', 'Nitab4.5_0001918g0050' => 'nta', 'Nitab4.5_0002686g0030' => 'nta', 'Nitab4.5_0003156g0020' => 'nta', 'Nitab4.5_0003383g0040' => 'nta', 'Nitab4.5_0003918g0010' => 'nta', 'Nitab4.5_0006760g0010' => 'nta', 'Nn1g05981' => 'nnu', 'Nn1g06288' => 'nnu', 'Nn3g16371' => 'nnu', 'Nn3g16786' => 'nnu', 'Nn4g22232' => 'nnu', 'Oeu005144.1' => 'oeu', 'Oeu005145.1' => 'oeu', 'Oeu011348.1' => 'oeu', 'Oeu016415.1' => 'oeu', 'Oeu023501.1' => 'oeu', 'Oeu044473.1' => 'oeu', 'Oeu048892.2' => 'oeu', 'Os01g0549200' => 'osa', 'Os02g0469300' => 'osa', 'Os04g0311100' => 'osa', 'Os06g0474900' => 'osa', 'Os10g0181700' => 'osa', 'Os11g0454800' => 'osa', 'Peaxi162Scf00037g00714' => 'pax', 'Peaxi162Scf00084g01217' => 'pax', 'Peaxi162Scf00257g00217' => 'pax', 'Peaxi162Scf00516g00215' => 'pax', 'Peaxi162Scf00689g00123' => 'pax', 'PGR044G2719' => 'pgr', 'PGR083G1360' => 'pgr', 'PGR102G2849' => 'pgr', 'PGR119G2534' => 'pgr', 'PGSC0003DMG400003538' => 'stu', 'PGSC0003DMG400028138' => 'stu', 'PGSC0003DMG400031732' => 'stu', 'PGSC0003DMG400038165' => 'stu', 'Phvul.002G284600' => 'pvu', 'Phvul.003G258200' => 'pvu', 'Phvul.009G176500' => 'pvu', 'Potri.003G167201' => 'ptr', 'Potri.005G118400' => 'ptr', 'Potri.012G089000' => 'ptr', 'Potri.012G102800' => 'ptr', 'Potri.015G079400' => 'ptr', 'Potri.015G100900' => 'ptr', 'Pp3c14_9810' => 'ppa', 'Pp3c15_10450' => 'ppa', 'Pp3c20_19150' => 'ppa', 'Pp3c23_12740' => 'ppa', 'Pp3c23_6310' => 'ppa', 'Pp3c24_3720' => 'ppa', 'Pp3c27_2580' => 'ppa', 'Pp3c9_8990' => 'ppa', 'PRCOL_00002854' => 'pco', 'Prupe.1G221200' => 'ppe', 'Prupe.3G289000' => 'ppe', 'Prupe.5G147000' => 'ppe', 'Prupe.6G157300' => 'ppe', 'Prupe.7G163400' => 'ppe', 'Psat0s2177g0040' => 'psa', 'Psat3g174760' => 'psa', 'Psat3g192160' => 'psa', 'Psat4g058520' => 'psa', 'Psat4g096840' => 'psa', 'Psat7g037320' => 'psa', 'PSO017G1274' => 'pso', 'PSO017G5166' => 'pso', 'PSO063G4558' => 'pso', 'PSO170G4458' => 'pso', 'PSO170G5005' => 'pso', 'PSO210G6156' => 'pso', 'PSO210G6635' => 'pso', 'PSO210G7397' => 'pso', 'PSO210G7700' => 'pso', 'PSO455G0035' => 'pso', 'PSO455G0180' => 'pso', 'PSO478G4515' => 'pso', 'PSO832G1305' => 'pso', 'PSO832G3489' => 'pso', 'QL02p075247' => 'qlo', 'QL03p051148' => 'qlo', 'QL05p010313' => 'qlo', 'QL06p034627' => 'qlo', 'QL10p001889' => 'qlo', 'QL10p010846' => 'qlo', 'RcHm_v2.0_Chr1g0350621' => 'rch', 'RcHm_v2.0_Chr1g0350641' => 'rch', 'RcHm_v2.0_Chr2g0092891' => 'rch', 'RcHm_v2.0_Chr2g0100251' => 'rch', 'RcHm_v2.0_Chr2g0158661' => 'rch', 'RcHm_v2.0_Chr2g0172741' => 'rch', 'RcHm_v2.0_Chr4g0429571' => 'rch', 'RcHm_v2.0_Chr5g0042471' => 'rch', 'RcHm_v2.0_Chr7g0189451' => 'rch', 'Rhsim08G0052000' => 'rsi', 'Rhsim08G0174400' => 'rsi', 'Rhsim08G0193200' => 'rsi', 'Rhsim10G0214800' => 'rsi', 'Rhsim10G0214900' => 'rsi', 'Rhsim10G0215000' => 'rsi', 'Rhsim12G0022900' => 'rsi', 'Rhsim12G0177500' => 'rsi', 'Rhsim12G0177700' => 'rsi', 'Sabra03G0122600' => 'sbr', 'Sabra05G0097400' => 'sbr', 'Sabra12G0064100' => 'sbr', 'Sabra15G0121300' => 'sbr', 'SalBow2G0642' => 'sbo', 'SalBow5G2667' => 'sbo', 'SalBow5G4873' => 'sbo', 'SalBow8G2395' => 'sbo', 'Sc03g0003290' => 'sci', 'Sc10g0010130' => 'sci', 'Sc22g0003650' => 'sci', 'Sed0001603' => 'sed', 'Sed0004259' => 'sed', 'Sed0006789' => 'sed', 'Sed0011838' => 'sed', 'Sed0012964' => 'sed', 'Sed0016383' => 'sed', 'Sed0019010' => 'sed', 'Sed0020188' => 'sed', 'SEGI_04702' => 'sgi', 'SEGI_17231' => 'sgi', 'SEGI_18877' => 'sgi', 'SEGI_25196' => 'sgi', 'SEGI_25515' => 'sgi', 'SEGI_28445' => 'sgi', 'SEGI_37452' => 'sgi', 'SGA_v2.0_scaffold188G40336' => 'sas', 'SGA_v2.0_scaffold228G43247' => 'sas', 'SGA_v2.0_scaffold280G46853' => 'sas', 'SGA_v2.0_scaffold34G13808' => 'sas', 'SGA_v2.0_scaffold40G15576' => 'sas', 'SGA_v2.0_scaffold611G53188' => 'sas', 'SGA_v2.0_scaffold78G25461' => 'sas', 'SGA_v2.0_scaffold90G27888' => 'sas', 'SHI08601' => 'shi', 'SHI08606' => 'shi', 'SHI17117' => 'shi', 'SHI17119' => 'shi', 'SMO118G0201' => 'smo', 'SMO169G0247' => 'smo', 'SMO176G0006' => 'smo', 'SMO176G0015' => 'smo', 'SMO202G0006' => 'smo', 'SMO240G0050' => 'smo', 'SMO286G0009' => 'smo', 'SMO338G0033' => 'smo', 'SMO356G0533' => 'smo', 'SMO364G0382' => 'smo', 'SMO367G0166' => 'smo', 'SMO367G1098' => 'smo', 'Solyc01g009920.3' => 'sly', 'Solyc01g099300.3' => 'sly', 'Solyc02g084700.3' => 'sly', 'Solyc03g097520.3' => 'sly', 'Solyc06g071580.3' => 'sly', 'Solyc10g081760.3' => 'sly', 'Sopen01g005480' => 'spe', 'Sopen01g042850' => 'spe', 'Sopen02g029370' => 'spe', 'Sopen03g028280' => 'spe', 'Sopen06g027870' => 'spe', 'Sopen10g032270' => 'spe', 'Sp5g18180' => 'spa', 'Sp6g12880' => 'spa', 'Sp6g30850' => 'spa', 'Sp7g22960' => 'spa', 'Sp7g34010' => 'spa', 'SpUn1326_0010' => 'spa', 'TAR371G0242' => 'tar', 'TAR622G0638' => 'tar', 'TAR628G1548' => 'tar', 'TAR629G1079' => 'tar', 'TAR629G3413' => 'tar', 'THA.LOC104804249' => 'tha', 'THA.LOC104808315' => 'tha', 'THA.LOC104809238' => 'tha', 'THA.LOC104825484' => 'tha', 'Thecc.01G025500' => 'tca', 'Thecc.03G015800' => 'tca', 'Thecc.03G018000' => 'tca', 'Thecc.03G134800' => 'tca', 'Thecc.04G014700' => 'tca', 'Thhalv10006991m.g' => 'esa', 'Thhalv10012707m.g' => 'esa', 'Thhalv10015739m.g' => 'esa', 'Thhalv10024553m.g' => 'esa', 'Thhalv10024673m.g' => 'esa', 'Thhalv10029187m.g' => 'esa', 'TPR.G12971' => 'tpr', 'TPR.G29396' => 'tpr', 'TPR.G33376' => 'tpr', 'TPR.G35508' => 'tpr', 'TPR.G35516' => 'tpr', 'TPR.G37317' => 'tpr', 'TPR.G37389' => 'tpr', 'TPR.G37523' => 'tpr', 'TPR.G559' => 'tpr', 'TWI14G0070' => 'twi', 'TWI14G0729' => 'twi', 'TWI18G0596' => 'twi', 'TWI39G0780' => 'twi', 'TWI39G0850' => 'twi', 'TWI73G1052' => 'twi', 'unitig_52.g17485' => 'ugi', 'unitig_61.g26355' => 'ugi', 'vmacro01040' => 'vma', 'vmacro16731' => 'vma', 'vmacro18270' => 'vma', 'vmacro19142' => 'vma', 'vmacro19407' => 'vma', 'vmacro19408' => 'vma', 'vmacro21899' => 'vma', 'vmacro21900' => 'vma', 'vmacro21901' => 'vma', 'VMungo0251G0490' => 'vmu', 'VMungo0251G1748' => 'vmu', 'VMungo1309G0421' => 'vmu', 'Zm00001eb086500' => 'zma', 'Zm00001eb150680' => 'zma', 'Zm00001eb162330' => 'zma', 'Zm00001eb203130' => 'zma', 'Zm00001eb369480' => 'zma', 'Zm00001eb382340' => 'zma', 'Zm00001eb416360' => 'zma' ), 'gf_id' => 'HOM05D000902', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000902' ), 'data_identifier' => 'HOM05D000902', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000902', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '663', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02470' => 'bna', 'A01p16260' => 'bna', 'A02p01680' => 'bna', 'A03p16600' => 'bna', 'A03p55660' => 'bna', 'A03p64160' => 'bna', 'A03p64170' => 'bna', 'A08p31900' => 'bna', 'A09p59530' => 'bna', 'A10p08230' => 'bna', 'A10p25090' => 'bna', 'Aa31LG3G7100' => 'aar', 'Aa31LG3G7110' => 'aar', 'Aa31LG6G13160' => 'aar', 'Aa31LG7G10770' => 'aar', 'Aa31LG7G3830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2723' => 'aag', 'Actinidia08045' => 'ach', 'Actinidia08888' => 'ach', 'Actinidia18333' => 'ach', 'Actinidia19334' => 'ach', 'Actinidia25552' => 'ach', 'Actinidia26089' => 'ach', 'Actinidia30615' => 'ach', 'Actinidia30616' => 'ach', 'Actinidia33083' => 'ach', 'Actinidia35762' => 'ach', 'Ah.02g110620' => 'amhyb', 'Ah.11g046390' => 'amhyb', 'AL1G31670' => 'aly', 'AL6G23730' => 'aly', 'AL7G14740' => 'aly', 'AL7G14750' => 'aly', 'AL7G14760' => 'aly', 'AL7G28220' => 'aly', 'AL8G24940' => 'aly', 'Aqoxy3G01665' => 'aox', 'Aqoxy3G02853' => 'aox', 'Aqoxy5G01513' => 'aox', 'Aqoxy5G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8SKA4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ75LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKDA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0LJZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7REX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZP4YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWX7I5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2QKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS0L9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPCD8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q161UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC7XCF' => 'arhy', 'AT1G19100' => 'ath', 'AT4G24970' => 'ath', 'AT4G36270' => 'ath', 'AT4G36280' => 'ath', 'AT4G36290' => 'ath', 'AT5G13130' => 'ath', 'AT5G50780' => 'ath', 'ATR0582G266' => 'atr', 'ATR0661G195' => 'atr', 'ATR1152G031' => 'atr', 'Atru.chr11.2382' => 'acertr', 'Atru.chr12.2337' => 'acertr', 'Atru.chr3.744' => 'acertr', 'Atru.chr6.1870' => 'acertr', 'Atru.chr9.2515' => 'acertr', 'AUR62004120' => 'cqu', 'AUR62005667' => 'cqu', 'AUR62007634' => 'cqu', 'AUR62008186' => 'cqu', 'AUR62008187' => 'cqu', 'AUR62008188' => 'cqu', 'AUR62027954' => 'cqu', 'AUR62028766' => 'cqu', 'AUR62028767' => 'cqu', 'AUR62028768' => 'cqu', 'AUR62028886' => 'cqu', 'AUR62029563' => 'cqu', 'AUR62038832' => 'cqu', 'BcaB01g04149' => 'bca', 'BcaB03g12940' => 'bca', 'BcaB03g13090' => 'bca', 'BcaB03g14466' => 'bca', 'BcaB05g24035' => 'bca', 'BcaC01g06050' => 'bca', 'BcaC04g19148' => 'bca', 'BcaC04g20761' => 'bca', 'BcaC06g32845' => 'bca', 'BcaC07g41274' => 'bca', 'BcaC09g50827' => 'bca', 'BcaNung00741' => 'bca', 'BcaNung00742' => 'bca', 'BcaNung01859' => 'bca', 'BcaNung03985' => 'bca', 'BcaNung03989' => 'bca', 'BcaNung05661' => 'bca', 'BolC1t00257H' => 'bol', 'BolC1t01956H' => 'bol', 'BolC2t06534H' => 'bol', 'BolC3t14334H' => 'bol', 'BolC5t30451H' => 'bol', 'BolC7t45880H' => 'bol', 'BolC7t46586H' => 'bol', 'BolC8t49301H' => 'bol', 'BolC8t51837H' => 'bol', 'BolC9t56822H' => 'bol', 'BolC9t59235H' => 'bol', 'BraA01t00234Z' => 'bra', 'BraA01t01563Z' => 'bra', 'BraA02t05147Z' => 'bra', 'BraA03t10947Z' => 'bra', 'BraA03t14633Z' => 'bra', 'BraA08t35112Z' => 'bra', 'BraA09t41330Z' => 'bra', 'BraA10t44570Z' => 'bra', 'C01p02670' => 'bna', 'C01p20260' => 'bna', 'C02p05890' => 'bna', 'C03p19530' => 'bna', 'C05p17470' => 'bna', 'C07p53900' => 'bna', 'C07p61630' => 'bna', 'C08p16800' => 'bna', 'C08p42810' => 'bna', 'C09p39480' => 'bna', 'C09p63980' => 'bna', 'CAN.G1001.7' => 'can', 'CAN.G1034.55' => 'can', 'CAN.G143.7' => 'can', 'CAN.G3340.1' => 'can', 'CAN.G358.19' => 'can', 'CAN.G373.2' => 'can', 'CAN.G674.16' => 'can', 'CAN.G674.17' => 'can', 'CAN.G674.18' => 'can', 'CAN.G732.2' => 'can', 'CAN.G732.3' => 'can', 'CAN.G993.39' => 'can', 'CANSAT01G2052' => 'cansat', 'CANSAT80G0070' => 'cansat', 'CANSAT80G0483' => 'cansat', 'CANSAT80G0625' => 'cansat', 'CARHR019690' => 'chi', 'CARHR080280' => 'chi', 'CARHR152750' => 'chi', 'CARHR152760' => 'chi', 'CARHR152770' => 'chi', 'CARHR200340' => 'chi', 'CARHR232370' => 'chi', 'CARHR244670' => 'chi', 'CARHR244680' => 'chi', 'CARHR257520' => 'chi', 'Carub.0001s1872' => 'cru', 'Carub.0006s1130' => 'cru', 'Carub.0007s0396' => 'cru', 'Carub.0007s0397' => 'cru', 'Carub.0007s1608' => 'cru', 'Carub.0008s1068' => 'cru', 'Carub.0008s1077' => 'cru', 'Ca_16158_v3' => 'car', 'Ca_17571_v3' => 'car', 'Ca_21936_v3' => 'car', 'Ca_22350_v3' => 'car', 'CBR_g22445' => 'cbr', 'CBR_g26290' => 'cbr', 'Cc04_g09610' => 'ccan', 'Cc04_g12280' => 'ccan', 'Cc07_g10230' => 'ccan', 'CDE02G0093' => 'cde', 'CDE02G0701' => 'cde', 'CDE04G1050' => 'cde', 'CDE05G1833' => 'cde', 'CDE05G3058' => 'cde', 'CDE05G3380' => 'cde', 'CDE06G0536' => 'cde', 'Cfa006923' => 'cfa', 'Cfa009402' => 'cfa', 'Cfa018751' => 'cfa', 'Cfa019164' => 'cfa', 'Cfa022935' => 'cfa', 'Ciclev10019081m.g' => 'ccl', 'Ciclev10025076m.g' => 'ccl', 'Ciclev10030712m.g' => 'ccl', 'Ciclev10033760m.g' => 'ccl', 'CiPaw.05G105600' => 'cil', 'CiPaw.08G136700' => 'cil', 'CiPaw.11G003900' => 'cil', 'CiPaw.11G023700' => 'cil', 'CiPaw.12G003700' => 'cil', 'ClCG06G017100' => 'cla', 'ClCG06G018110' => 'cla', 'ClCG07G008800' => 'cla', 'ClCG07G015330' => 'cla', 'COL.COLO4_13698' => 'col', 'COL.COLO4_16659' => 'col', 'COL.COLO4_21986' => 'col', 'COL.COLO4_24049' => 'col', 'COL.COLO4_29061' => 'col', 'COL.COLO4_29075' => 'col', 'COL.COLO4_30094' => 'col', 'Cpa.g.c33689' => 'cpa', 'Cpa.g.sc108.39' => 'cpa', 'Cpa.g.sc108.41' => 'cpa', 'Cpa.g.sc1163.1' => 'cpa', 'Cpa.g.sc4.155' => 'cpa', 'Cpa.g.sc6.194' => 'cpa', 'CsaV3_1G000340' => 'csa', 'CsaV3_1G001400' => 'csa', 'CsaV3_4G002220' => 'csa', 'CsaV3_4G005370' => 'csa', 'CSS0007487' => 'camsi', 'CSS0008066' => 'camsi', 'CSS0009120' => 'camsi', 'CSS0015512' => 'camsi', 'CSS0022409' => 'camsi', 'CSS0025358' => 'camsi', 'CSS0044547' => 'camsi', 'DCAR_013057' => 'dca', 'DCAR_015058' => 'dca', 'DCAR_016027' => 'dca', 'DCAR_017327' => 'dca', 'DCAR_020743' => 'dca', 'DCAR_026157' => 'dca', 'DCAR_032339' => 'dca', 'DCAR_032340' => 'dca', 'Dinv11200' => 'din', 'Dinv11201' => 'din', 'Dinv20631' => 'din', 'Dinv23182' => 'din', 'Dinv33466' => 'din', 'Dinv33583' => 'din', 'Dinv38565' => 'din', 'Duzib068G0200' => 'dzi', 'Duzib147G0132' => 'dzi', 'Duzib147G0635' => 'dzi', 'Duzib205G1670' => 'dzi', 'Duzib251G0606' => 'dzi', 'ECA232G3336' => 'eca', 'ECA232G3763' => 'eca', 'ECA232G4845' => 'eca', 'ECA234G1607' => 'eca', 'ECA246G0932' => 'eca', 'ECA247G0781' => 'eca', 'ECA247G1932' => 'eca', 'ECA247G2079' => 'eca', 'ECA247G3338' => 'eca', 'ECA247G4115' => 'eca', 'EL10Ac3g06552' => 'bvu', 'EL10Ac5g10721' => 'bvu', 'EL10Ac5g10722' => 'bvu', 'EL10Ac5g10723' => 'bvu', 'EL10Ac5g11361' => 'bvu', 'EL10Ac6g13553' => 'bvu', 'EL10As8g23872' => 'bvu', 'Eucgr.B00250' => 'egr', 'Eucgr.B00251' => 'egr', 'Eucgr.B03533' => 'egr', 'Eucgr.I02381' => 'egr', 'Eucgr.K02700' => 'egr', 'FAN02G0174' => 'fan', 'FAN02G3146' => 'fan', 'FAN04G1672' => 'fan', 'FAN04G2273' => 'fan', 'FAN05G2791' => 'fan', 'FAN05G4035' => 'fan', 'FAN07G0834' => 'fan', 'FAN08G1198' => 'fan', 'FAN09G4182' => 'fan', 'FAN12G0496' => 'fan', 'FAN13G1027' => 'fan', 'FAN13G2951' => 'fan', 'FAN14G0705' => 'fan', 'FAN14G0720' => 'fan', 'FAN17G0201' => 'fan', 'FAN17G2665' => 'fan', 'FAN18G1456' => 'fan', 'FAN18G1525' => 'fan', 'FAN18G3500' => 'fan', 'FAN28G2670' => 'fan', 'FvH4_1g12391' => 'fve', 'FvH4_4g23220' => 'fve', 'FvH4_5g08810' => 'fve', 'FvH4_5g28960' => 'fve', 'FvH4_6g42820' => 'fve', 'FvH4_6g51110' => 'fve', 'Glyma.02G051802' => 'gma', 'Glyma.04G185300' => 'gma', 'Glyma.05G202900' => 'gma', 'Glyma.08G010300' => 'gma', 'Glyma.16G131900' => 'gma', 'Glyma.17G087900' => 'gma', 'Gohir.A07G048600' => 'ghi', 'Gohir.A11G179000' => 'ghi', 'Gohir.A12G140900' => 'ghi', 'Gohir.A12G140950' => 'ghi', 'Gohir.A12G191700' => 'ghi', 'Gohir.A13G086300' => 'ghi', 'Gohir.D07G052900' => 'ghi', 'Gohir.D11G186600' => 'ghi', 'Gohir.D12G145575' => 'ghi', 'Gohir.D12G145650' => 'ghi', 'Gohir.D12G145725' => 'ghi', 'Gohir.D12G194050' => 'ghi', 'Gohir.D13G091800' => 'ghi', 'Gorai.001G055900' => 'gra', 'Gorai.007G198400' => 'gra', 'Gorai.008G157000' => 'gra', 'Gorai.008G157100' => 'gra', 'Gorai.008G208700' => 'gra', 'Gorai.010G138700' => 'gra', 'GSVIVG01000977001' => 'vvi', 'GSVIVG01007708001' => 'vvi', 'GSVIVG01008587001' => 'vvi', 'GSVIVG01018849001' => 'vvi', 'GSVIVG01032432001' => 'vvi', 'HanXRQChr02g0034131' => 'han', 'HanXRQChr02g0035981' => 'han', 'HanXRQChr02g0035991' => 'han', 'HanXRQChr05g0155611' => 'han', 'HanXRQChr05g0155621' => 'han', 'HanXRQChr08g0236501' => 'han', 'HanXRQChr09g0261321' => 'han', 'HanXRQChr09g0272081' => 'han', 'HanXRQChr10g0310741' => 'han', 'HanXRQChr11g0325591' => 'han', 'HanXRQChr12g0385691' => 'han', 'HanXRQChr13g0387801' => 'han', 'HanXRQChr15g0463011' => 'han', 'Haze_03826' => 'cav', 'Haze_03827' => 'cav', 'Haze_07183' => 'cav', 'Haze_07537' => 'cav', 'Haze_07539' => 'cav', 'Haze_12461' => 'cav', 'Haze_16115' => 'cav', 'Haze_16808' => 'cav', 'Haze_18531' => 'cav', 'Hma1.2p1_0046F.1_g026700' => 'hma', 'Hma1.2p1_0046F.1_g026710' => 'hma', 'Hma1.2p1_0168F.1_g074340' => 'hma', 'Hma1.2p1_0266F.1_g107030' => 'hma', 'Hma1.2p1_0266F.1_g107060' => 'hma', 'Hma1.2p1_0275F.1_g110510' => 'hma', 'Hma1.2p1_0592F.1_g185490' => 'hma', 'Hma1.2p1_0592F.1_g185500' => 'hma', 'Hma1.2p1_0592F.1_g185510' => 'hma', 'Hma1.2p1_0592F.1_g185520' => 'hma', 'Hma1.2p1_0592F.1_g185530' => 'hma', 'Hma1.2p1_0818F.1_g223450' => 'hma', 'HPP92_009708' => 'vpl', 'HPP92_009793' => 'vpl', 'HPP92_009796' => 'vpl', 'HPP92_009797' => 'vpl', 'HPP92_014940' => 'vpl', 'HPP92_014988' => 'vpl', 'Hund02463' => 'sun', 'Hund02760' => 'sun', 'Hund05071' => 'sun', 'Hund10108' => 'sun', 'Hund11204' => 'sun', 'Hund14016' => 'sun', 'Hund16464' => 'sun', 'Lalb_Chr09g0333391' => 'lal', 'Lalb_Chr11g0070461' => 'lal', 'Lalb_Chr12g0201671' => 'lal', 'Lalb_Chr13g0297161' => 'lal', 'Lj1g0002823' => 'lja', 'Lj3C1074T6' => 'lonja', 'Lj4A212T28' => 'lonja', 'Lj4g0005516' => 'lja', 'Lj4g0013705' => 'lja', 'Lj4g0027865' => 'lja', 'Lj5C92G16' => 'lonja', 'Lj5C92T12' => 'lonja', 'Lj7C596T3' => 'lonja', 'Lj9A446G59' => 'lonja', 'Lj9A482G21' => 'lonja', 'Lsat_1_v5_gn_1_28261' => 'lsa', 'Lsat_1_v5_gn_1_28281' => 'lsa', 'Lsat_1_v5_gn_1_32721' => 'lsa', 'Lsat_1_v5_gn_4_151760' => 'lsa', 'Lsat_1_v5_gn_4_2120' => 'lsa', 'Lsat_1_v5_gn_4_75761' => 'lsa', 'Lsat_1_v5_gn_5_10920' => 'lsa', 'Manes.02G099900' => 'mes', 'Manes.11G096200' => 'mes', 'Manes.12G007200' => 'mes', 'Manes.14G048300' => 'mes', 'Manes.17G114700' => 'mes', 'Mapoly0002s0070' => 'mpo', 'Mapoly0029s0099' => 'mpo', 'MBI07_g24742_MAGBIO' => 'mbi', 'MBI10_g27988_MAGBIO' => 'mbi', 'MBI11_g13057_MAGBIO' => 'mbi', 'MD02G1137200' => 'mdo', 'MD06G1137200' => 'mdo', 'MD07G1122300' => 'mdo', 'MD09G1078200' => 'mdo', 'MD13G1123700' => 'mdo', 'MD14G1151900' => 'mdo', 'MD17G1030900' => 'mdo', 'MD17G1068200' => 'mdo', 'MD17G1068600' => 'mdo', 'Medtr3g077540' => 'mtr', 'Medtr4g105530' => 'mtr', 'Medtr8g076580' => 'mtr', 'Medtr8g076590' => 'mtr', 'Medtr8g096410' => 'mtr', 'MELO3C016411.2' => 'cme', 'MELO3C017780.2' => 'cme', 'MELO3C022560.2' => 'cme', 'MELO3C026187.2' => 'cme', 'MELO3C026286.2' => 'cme', 'MELO3C032854.2' => 'cme', 'Migut.H02495' => 'egut', 'Migut.I00561' => 'egut', 'Migut.K01015' => 'egut', 'Migut.K01016' => 'egut', 'Migut.L00743' => 'egut', 'Migut.L00744' => 'egut', 'Migut.L00746' => 'egut', 'Migut.L00798' => 'egut', 'Migut.L00799' => 'egut', 'Migut.N02096' => 'egut', 'MSTRG.11259' => 'ama', 'MSTRG.23142' => 'ama', 'MSTRG.2499' => 'ama', 'Nitab4.5_0000003g0730' => 'nta', 'Nitab4.5_0000137g0020' => 'nta', 'Nitab4.5_0000721g0210' => 'nta', 'Nitab4.5_0000723g0050' => 'nta', 'Nitab4.5_0000913g0070' => 'nta', 'Nitab4.5_0001332g0040' => 'nta', 'Nitab4.5_0001771g0050' => 'nta', 'Nitab4.5_0001918g0050' => 'nta', 'Nitab4.5_0002686g0030' => 'nta', 'Nitab4.5_0003156g0020' => 'nta', 'Nitab4.5_0003383g0040' => 'nta', 'Nitab4.5_0003918g0010' => 'nta', 'Nitab4.5_0006760g0010' => 'nta', 'Nn1g05981' => 'nnu', 'Nn1g06288' => 'nnu', 'Nn3g16371' => 'nnu', 'Nn3g16786' => 'nnu', 'Nn4g22232' => 'nnu', 'Oeu005144.1' => 'oeu', 'Oeu005145.1' => 'oeu', 'Oeu011348.1' => 'oeu', 'Oeu016415.1' => 'oeu', 'Oeu023501.1' => 'oeu', 'Oeu044473.1' => 'oeu', 'Oeu048892.2' => 'oeu', 'Os01g0549200' => 'osa', 'Os02g0469300' => 'osa', 'Os04g0311100' => 'osa', 'Os06g0474900' => 'osa', 'Os10g0181700' => 'osa', 'Os11g0454800' => 'osa', 'Peaxi162Scf00037g00714' => 'pax', 'Peaxi162Scf00084g01217' => 'pax', 'Peaxi162Scf00257g00217' => 'pax', 'Peaxi162Scf00516g00215' => 'pax', 'Peaxi162Scf00689g00123' => 'pax', 'PGR044G2719' => 'pgr', 'PGR083G1360' => 'pgr', 'PGR102G2849' => 'pgr', 'PGR119G2534' => 'pgr', 'PGSC0003DMG400003538' => 'stu', 'PGSC0003DMG400028138' => 'stu', 'PGSC0003DMG400031732' => 'stu', 'PGSC0003DMG400038165' => 'stu', 'Phvul.002G284600' => 'pvu', 'Phvul.003G258200' => 'pvu', 'Phvul.009G176500' => 'pvu', 'Potri.003G167201' => 'ptr', 'Potri.005G118400' => 'ptr', 'Potri.012G089000' => 'ptr', 'Potri.012G102800' => 'ptr', 'Potri.015G079400' => 'ptr', 'Potri.015G100900' => 'ptr', 'Pp3c14_9810' => 'ppa', 'Pp3c15_10450' => 'ppa', 'Pp3c20_19150' => 'ppa', 'Pp3c23_12740' => 'ppa', 'Pp3c23_6310' => 'ppa', 'Pp3c24_3720' => 'ppa', 'Pp3c27_2580' => 'ppa', 'Pp3c9_8990' => 'ppa', 'PRCOL_00002854' => 'pco', 'Prupe.1G221200' => 'ppe', 'Prupe.3G289000' => 'ppe', 'Prupe.5G147000' => 'ppe', 'Prupe.6G157300' => 'ppe', 'Prupe.7G163400' => 'ppe', 'Psat0s2177g0040' => 'psa', 'Psat3g174760' => 'psa', 'Psat3g192160' => 'psa', 'Psat4g058520' => 'psa', 'Psat4g096840' => 'psa', 'Psat7g037320' => 'psa', 'PSO017G1274' => 'pso', 'PSO017G5166' => 'pso', 'PSO063G4558' => 'pso', 'PSO170G4458' => 'pso', 'PSO170G5005' => 'pso', 'PSO210G6156' => 'pso', 'PSO210G6635' => 'pso', 'PSO210G7397' => 'pso', 'PSO210G7700' => 'pso', 'PSO455G0035' => 'pso', 'PSO455G0180' => 'pso', 'PSO478G4515' => 'pso', 'PSO832G1305' => 'pso', 'PSO832G3489' => 'pso', 'QL02p075247' => 'qlo', 'QL03p051148' => 'qlo', 'QL05p010313' => 'qlo', 'QL06p034627' => 'qlo', 'QL10p001889' => 'qlo', 'QL10p010846' => 'qlo', 'RcHm_v2.0_Chr1g0350621' => 'rch', 'RcHm_v2.0_Chr1g0350641' => 'rch', 'RcHm_v2.0_Chr2g0092891' => 'rch', 'RcHm_v2.0_Chr2g0100251' => 'rch', 'RcHm_v2.0_Chr2g0158661' => 'rch', 'RcHm_v2.0_Chr2g0172741' => 'rch', 'RcHm_v2.0_Chr4g0429571' => 'rch', 'RcHm_v2.0_Chr5g0042471' => 'rch', 'RcHm_v2.0_Chr7g0189451' => 'rch', 'Rhsim08G0052000' => 'rsi', 'Rhsim08G0174400' => 'rsi', 'Rhsim08G0193200' => 'rsi', 'Rhsim10G0214800' => 'rsi', 'Rhsim10G0214900' => 'rsi', 'Rhsim10G0215000' => 'rsi', 'Rhsim12G0022900' => 'rsi', 'Rhsim12G0177500' => 'rsi', 'Rhsim12G0177700' => 'rsi', 'Sabra03G0122600' => 'sbr', 'Sabra05G0097400' => 'sbr', 'Sabra12G0064100' => 'sbr', 'Sabra15G0121300' => 'sbr', 'SalBow2G0642' => 'sbo', 'SalBow5G2667' => 'sbo', 'SalBow5G4873' => 'sbo', 'SalBow8G2395' => 'sbo', 'Sc03g0003290' => 'sci', 'Sc10g0010130' => 'sci', 'Sc22g0003650' => 'sci', 'Sed0001603' => 'sed', 'Sed0004259' => 'sed', 'Sed0006789' => 'sed', 'Sed0011838' => 'sed', 'Sed0012964' => 'sed', 'Sed0016383' => 'sed', 'Sed0019010' => 'sed', 'Sed0020188' => 'sed', 'SEGI_04702' => 'sgi', 'SEGI_17231' => 'sgi', 'SEGI_18877' => 'sgi', 'SEGI_25196' => 'sgi', 'SEGI_25515' => 'sgi', 'SEGI_28445' => 'sgi', 'SEGI_37452' => 'sgi', 'SGA_v2.0_scaffold188G40336' => 'sas', 'SGA_v2.0_scaffold228G43247' => 'sas', 'SGA_v2.0_scaffold280G46853' => 'sas', 'SGA_v2.0_scaffold34G13808' => 'sas', 'SGA_v2.0_scaffold40G15576' => 'sas', 'SGA_v2.0_scaffold611G53188' => 'sas', 'SGA_v2.0_scaffold78G25461' => 'sas', 'SGA_v2.0_scaffold90G27888' => 'sas', 'SHI08601' => 'shi', 'SHI08606' => 'shi', 'SHI17117' => 'shi', 'SHI17119' => 'shi', 'SMO118G0201' => 'smo', 'SMO169G0247' => 'smo', 'SMO176G0006' => 'smo', 'SMO176G0015' => 'smo', 'SMO202G0006' => 'smo', 'SMO240G0050' => 'smo', 'SMO286G0009' => 'smo', 'SMO338G0033' => 'smo', 'SMO356G0533' => 'smo', 'SMO364G0382' => 'smo', 'SMO367G0166' => 'smo', 'SMO367G1098' => 'smo', 'Solyc01g009920.3' => 'sly', 'Solyc01g099300.3' => 'sly', 'Solyc02g084700.3' => 'sly', 'Solyc03g097520.3' => 'sly', 'Solyc06g071580.3' => 'sly', 'Solyc10g081760.3' => 'sly', 'Sopen01g005480' => 'spe', 'Sopen01g042850' => 'spe', 'Sopen02g029370' => 'spe', 'Sopen03g028280' => 'spe', 'Sopen06g027870' => 'spe', 'Sopen10g032270' => 'spe', 'Sp5g18180' => 'spa', 'Sp6g12880' => 'spa', 'Sp6g30850' => 'spa', 'Sp7g22960' => 'spa', 'Sp7g34010' => 'spa', 'SpUn1326_0010' => 'spa', 'TAR371G0242' => 'tar', 'TAR622G0638' => 'tar', 'TAR628G1548' => 'tar', 'TAR629G1079' => 'tar', 'TAR629G3413' => 'tar', 'THA.LOC104804249' => 'tha', 'THA.LOC104808315' => 'tha', 'THA.LOC104809238' => 'tha', 'THA.LOC104825484' => 'tha', 'Thecc.01G025500' => 'tca', 'Thecc.03G015800' => 'tca', 'Thecc.03G018000' => 'tca', 'Thecc.03G134800' => 'tca', 'Thecc.04G014700' => 'tca', 'Thhalv10006991m.g' => 'esa', 'Thhalv10012707m.g' => 'esa', 'Thhalv10015739m.g' => 'esa', 'Thhalv10024553m.g' => 'esa', 'Thhalv10024673m.g' => 'esa', 'Thhalv10029187m.g' => 'esa', 'TPR.G12971' => 'tpr', 'TPR.G29396' => 'tpr', 'TPR.G33376' => 'tpr', 'TPR.G35508' => 'tpr', 'TPR.G35516' => 'tpr', 'TPR.G37317' => 'tpr', 'TPR.G37389' => 'tpr', 'TPR.G37523' => 'tpr', 'TPR.G559' => 'tpr', 'TWI14G0070' => 'twi', 'TWI14G0729' => 'twi', 'TWI18G0596' => 'twi', 'TWI39G0780' => 'twi', 'TWI39G0850' => 'twi', 'TWI73G1052' => 'twi', 'unitig_52.g17485' => 'ugi', 'unitig_61.g26355' => 'ugi', 'vmacro01040' => 'vma', 'vmacro16731' => 'vma', 'vmacro18270' => 'vma', 'vmacro19142' => 'vma', 'vmacro19407' => 'vma', 'vmacro19408' => 'vma', 'vmacro21899' => 'vma', 'vmacro21900' => 'vma', 'vmacro21901' => 'vma', 'VMungo0251G0490' => 'vmu', 'VMungo0251G1748' => 'vmu', 'VMungo1309G0421' => 'vmu', 'Zm00001eb086500' => 'zma', 'Zm00001eb150680' => 'zma', 'Zm00001eb162330' => 'zma', 'Zm00001eb203130' => 'zma', 'Zm00001eb369480' => 'zma', 'Zm00001eb382340' => 'zma', 'Zm00001eb416360' => 'zma' ) $gf_id = 'HOM05D000902' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000902' ) $data_identifier = 'HOM05D000902' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 13, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 10, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 6, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 9, 'hma' => (int) 12, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 4, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 6, 'ppa' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 6, 'rch' => (int) 9, 'rsi' => (int) 9, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 12, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 3, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416360' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000902', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '663', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02470' => 'bna', 'A01p16260' => 'bna', 'A02p01680' => 'bna', 'A03p16600' => 'bna', 'A03p55660' => 'bna', 'A03p64160' => 'bna', 'A03p64170' => 'bna', 'A08p31900' => 'bna', 'A09p59530' => 'bna', 'A10p08230' => 'bna', 'A10p25090' => 'bna', 'Aa31LG3G7100' => 'aar', 'Aa31LG3G7110' => 'aar', 'Aa31LG6G13160' => 'aar', 'Aa31LG7G10770' => 'aar', 'Aa31LG7G3830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2723' => 'aag', 'Actinidia08045' => 'ach', 'Actinidia08888' => 'ach', 'Actinidia18333' => 'ach', 'Actinidia19334' => 'ach', 'Actinidia25552' => 'ach', 'Actinidia26089' => 'ach', 'Actinidia30615' => 'ach', 'Actinidia30616' => 'ach', 'Actinidia33083' => 'ach', 'Actinidia35762' => 'ach', 'Ah.02g110620' => 'amhyb', 'Ah.11g046390' => 'amhyb', 'AL1G31670' => 'aly', 'AL6G23730' => 'aly', 'AL7G14740' => 'aly', 'AL7G14750' => 'aly', 'AL7G14760' => 'aly', 'AL7G28220' => 'aly', 'AL8G24940' => 'aly', 'Aqoxy3G01665' => 'aox', 'Aqoxy3G02853' => 'aox', 'Aqoxy5G01513' => 'aox', 'Aqoxy5G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8SKA4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ75LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKDA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0LJZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7REX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZP4YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWX7I5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2QKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS0L9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPCD8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q161UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC7XCF' => 'arhy', 'AT1G19100' => 'ath', 'AT4G24970' => 'ath', 'AT4G36270' => 'ath', 'AT4G36280' => 'ath', 'AT4G36290' => 'ath', 'AT5G13130' => 'ath', 'AT5G50780' => 'ath', 'ATR0582G266' => 'atr', 'ATR0661G195' => 'atr', 'ATR1152G031' => 'atr', 'Atru.chr11.2382' => 'acertr', 'Atru.chr12.2337' => 'acertr', 'Atru.chr3.744' => 'acertr', 'Atru.chr6.1870' => 'acertr', 'Atru.chr9.2515' => 'acertr', 'AUR62004120' => 'cqu', 'AUR62005667' => 'cqu', 'AUR62007634' => 'cqu', 'AUR62008186' => 'cqu', 'AUR62008187' => 'cqu', 'AUR62008188' => 'cqu', 'AUR62027954' => 'cqu', 'AUR62028766' => 'cqu', 'AUR62028767' => 'cqu', 'AUR62028768' => 'cqu', 'AUR62028886' => 'cqu', 'AUR62029563' => 'cqu', 'AUR62038832' => 'cqu', 'BcaB01g04149' => 'bca', 'BcaB03g12940' => 'bca', 'BcaB03g13090' => 'bca', 'BcaB03g14466' => 'bca', 'BcaB05g24035' => 'bca', 'BcaC01g06050' => 'bca', 'BcaC04g19148' => 'bca', 'BcaC04g20761' => 'bca', 'BcaC06g32845' => 'bca', 'BcaC07g41274' => 'bca', 'BcaC09g50827' => 'bca', 'BcaNung00741' => 'bca', 'BcaNung00742' => 'bca', 'BcaNung01859' => 'bca', 'BcaNung03985' => 'bca', 'BcaNung03989' => 'bca', 'BcaNung05661' => 'bca', 'BolC1t00257H' => 'bol', 'BolC1t01956H' => 'bol', 'BolC2t06534H' => 'bol', 'BolC3t14334H' => 'bol', 'BolC5t30451H' => 'bol', 'BolC7t45880H' => 'bol', 'BolC7t46586H' => 'bol', 'BolC8t49301H' => 'bol', 'BolC8t51837H' => 'bol', 'BolC9t56822H' => 'bol', 'BolC9t59235H' => 'bol', 'BraA01t00234Z' => 'bra', 'BraA01t01563Z' => 'bra', 'BraA02t05147Z' => 'bra', 'BraA03t10947Z' => 'bra', 'BraA03t14633Z' => 'bra', 'BraA08t35112Z' => 'bra', 'BraA09t41330Z' => 'bra', 'BraA10t44570Z' => 'bra', 'C01p02670' => 'bna', 'C01p20260' => 'bna', 'C02p05890' => 'bna', 'C03p19530' => 'bna', 'C05p17470' => 'bna', 'C07p53900' => 'bna', 'C07p61630' => 'bna', 'C08p16800' => 'bna', 'C08p42810' => 'bna', 'C09p39480' => 'bna', 'C09p63980' => 'bna', 'CAN.G1001.7' => 'can', 'CAN.G1034.55' => 'can', 'CAN.G143.7' => 'can', 'CAN.G3340.1' => 'can', 'CAN.G358.19' => 'can', 'CAN.G373.2' => 'can', 'CAN.G674.16' => 'can', 'CAN.G674.17' => 'can', 'CAN.G674.18' => 'can', 'CAN.G732.2' => 'can', 'CAN.G732.3' => 'can', 'CAN.G993.39' => 'can', 'CANSAT01G2052' => 'cansat', 'CANSAT80G0070' => 'cansat', 'CANSAT80G0483' => 'cansat', 'CANSAT80G0625' => 'cansat', 'CARHR019690' => 'chi', 'CARHR080280' => 'chi', 'CARHR152750' => 'chi', 'CARHR152760' => 'chi', 'CARHR152770' => 'chi', 'CARHR200340' => 'chi', 'CARHR232370' => 'chi', 'CARHR244670' => 'chi', 'CARHR244680' => 'chi', 'CARHR257520' => 'chi', 'Carub.0001s1872' => 'cru', 'Carub.0006s1130' => 'cru', 'Carub.0007s0396' => 'cru', 'Carub.0007s0397' => 'cru', 'Carub.0007s1608' => 'cru', 'Carub.0008s1068' => 'cru', 'Carub.0008s1077' => 'cru', 'Ca_16158_v3' => 'car', 'Ca_17571_v3' => 'car', 'Ca_21936_v3' => 'car', 'Ca_22350_v3' => 'car', 'CBR_g22445' => 'cbr', 'CBR_g26290' => 'cbr', 'Cc04_g09610' => 'ccan', 'Cc04_g12280' => 'ccan', 'Cc07_g10230' => 'ccan', 'CDE02G0093' => 'cde', 'CDE02G0701' => 'cde', 'CDE04G1050' => 'cde', 'CDE05G1833' => 'cde', 'CDE05G3058' => 'cde', 'CDE05G3380' => 'cde', 'CDE06G0536' => 'cde', 'Cfa006923' => 'cfa', 'Cfa009402' => 'cfa', 'Cfa018751' => 'cfa', 'Cfa019164' => 'cfa', 'Cfa022935' => 'cfa', 'Ciclev10019081m.g' => 'ccl', 'Ciclev10025076m.g' => 'ccl', 'Ciclev10030712m.g' => 'ccl', 'Ciclev10033760m.g' => 'ccl', 'CiPaw.05G105600' => 'cil', 'CiPaw.08G136700' => 'cil', 'CiPaw.11G003900' => 'cil', 'CiPaw.11G023700' => 'cil', 'CiPaw.12G003700' => 'cil', 'ClCG06G017100' => 'cla', 'ClCG06G018110' => 'cla', 'ClCG07G008800' => 'cla', 'ClCG07G015330' => 'cla', 'COL.COLO4_13698' => 'col', 'COL.COLO4_16659' => 'col', 'COL.COLO4_21986' => 'col', 'COL.COLO4_24049' => 'col', 'COL.COLO4_29061' => 'col', 'COL.COLO4_29075' => 'col', 'COL.COLO4_30094' => 'col', 'Cpa.g.c33689' => 'cpa', 'Cpa.g.sc108.39' => 'cpa', 'Cpa.g.sc108.41' => 'cpa', 'Cpa.g.sc1163.1' => 'cpa', 'Cpa.g.sc4.155' => 'cpa', 'Cpa.g.sc6.194' => 'cpa', 'CsaV3_1G000340' => 'csa', 'CsaV3_1G001400' => 'csa', 'CsaV3_4G002220' => 'csa', 'CsaV3_4G005370' => 'csa', 'CSS0007487' => 'camsi', 'CSS0008066' => 'camsi', 'CSS0009120' => 'camsi', 'CSS0015512' => 'camsi', 'CSS0022409' => 'camsi', 'CSS0025358' => 'camsi', 'CSS0044547' => 'camsi', 'DCAR_013057' => 'dca', 'DCAR_015058' => 'dca', 'DCAR_016027' => 'dca', 'DCAR_017327' => 'dca', 'DCAR_020743' => 'dca', 'DCAR_026157' => 'dca', 'DCAR_032339' => 'dca', 'DCAR_032340' => 'dca', 'Dinv11200' => 'din', 'Dinv11201' => 'din', 'Dinv20631' => 'din', 'Dinv23182' => 'din', 'Dinv33466' => 'din', 'Dinv33583' => 'din', 'Dinv38565' => 'din', 'Duzib068G0200' => 'dzi', 'Duzib147G0132' => 'dzi', 'Duzib147G0635' => 'dzi', 'Duzib205G1670' => 'dzi', 'Duzib251G0606' => 'dzi', 'ECA232G3336' => 'eca', 'ECA232G3763' => 'eca', 'ECA232G4845' => 'eca', 'ECA234G1607' => 'eca', 'ECA246G0932' => 'eca', 'ECA247G0781' => 'eca', 'ECA247G1932' => 'eca', 'ECA247G2079' => 'eca', 'ECA247G3338' => 'eca', 'ECA247G4115' => 'eca', 'EL10Ac3g06552' => 'bvu', 'EL10Ac5g10721' => 'bvu', 'EL10Ac5g10722' => 'bvu', 'EL10Ac5g10723' => 'bvu', 'EL10Ac5g11361' => 'bvu', 'EL10Ac6g13553' => 'bvu', 'EL10As8g23872' => 'bvu', 'Eucgr.B00250' => 'egr', 'Eucgr.B00251' => 'egr', 'Eucgr.B03533' => 'egr', 'Eucgr.I02381' => 'egr', 'Eucgr.K02700' => 'egr', 'FAN02G0174' => 'fan', 'FAN02G3146' => 'fan', 'FAN04G1672' => 'fan', 'FAN04G2273' => 'fan', 'FAN05G2791' => 'fan', 'FAN05G4035' => 'fan', 'FAN07G0834' => 'fan', 'FAN08G1198' => 'fan', 'FAN09G4182' => 'fan', 'FAN12G0496' => 'fan', 'FAN13G1027' => 'fan', 'FAN13G2951' => 'fan', 'FAN14G0705' => 'fan', 'FAN14G0720' => 'fan', 'FAN17G0201' => 'fan', 'FAN17G2665' => 'fan', 'FAN18G1456' => 'fan', 'FAN18G1525' => 'fan', 'FAN18G3500' => 'fan', 'FAN28G2670' => 'fan', 'FvH4_1g12391' => 'fve', 'FvH4_4g23220' => 'fve', 'FvH4_5g08810' => 'fve', 'FvH4_5g28960' => 'fve', 'FvH4_6g42820' => 'fve', 'FvH4_6g51110' => 'fve', 'Glyma.02G051802' => 'gma', 'Glyma.04G185300' => 'gma', 'Glyma.05G202900' => 'gma', 'Glyma.08G010300' => 'gma', 'Glyma.16G131900' => 'gma', 'Glyma.17G087900' => 'gma', 'Gohir.A07G048600' => 'ghi', 'Gohir.A11G179000' => 'ghi', 'Gohir.A12G140900' => 'ghi', 'Gohir.A12G140950' => 'ghi', 'Gohir.A12G191700' => 'ghi', 'Gohir.A13G086300' => 'ghi', 'Gohir.D07G052900' => 'ghi', 'Gohir.D11G186600' => 'ghi', 'Gohir.D12G145575' => 'ghi', 'Gohir.D12G145650' => 'ghi', 'Gohir.D12G145725' => 'ghi', 'Gohir.D12G194050' => 'ghi', 'Gohir.D13G091800' => 'ghi', 'Gorai.001G055900' => 'gra', 'Gorai.007G198400' => 'gra', 'Gorai.008G157000' => 'gra', 'Gorai.008G157100' => 'gra', 'Gorai.008G208700' => 'gra', 'Gorai.010G138700' => 'gra', 'GSVIVG01000977001' => 'vvi', 'GSVIVG01007708001' => 'vvi', 'GSVIVG01008587001' => 'vvi', 'GSVIVG01018849001' => 'vvi', 'GSVIVG01032432001' => 'vvi', 'HanXRQChr02g0034131' => 'han', 'HanXRQChr02g0035981' => 'han', 'HanXRQChr02g0035991' => 'han', 'HanXRQChr05g0155611' => 'han', 'HanXRQChr05g0155621' => 'han', 'HanXRQChr08g0236501' => 'han', 'HanXRQChr09g0261321' => 'han', 'HanXRQChr09g0272081' => 'han', 'HanXRQChr10g0310741' => 'han', 'HanXRQChr11g0325591' => 'han', 'HanXRQChr12g0385691' => 'han', 'HanXRQChr13g0387801' => 'han', 'HanXRQChr15g0463011' => 'han', 'Haze_03826' => 'cav', 'Haze_03827' => 'cav', 'Haze_07183' => 'cav', 'Haze_07537' => 'cav', 'Haze_07539' => 'cav', 'Haze_12461' => 'cav', 'Haze_16115' => 'cav', 'Haze_16808' => 'cav', 'Haze_18531' => 'cav', 'Hma1.2p1_0046F.1_g026700' => 'hma', 'Hma1.2p1_0046F.1_g026710' => 'hma', 'Hma1.2p1_0168F.1_g074340' => 'hma', 'Hma1.2p1_0266F.1_g107030' => 'hma', 'Hma1.2p1_0266F.1_g107060' => 'hma', 'Hma1.2p1_0275F.1_g110510' => 'hma', 'Hma1.2p1_0592F.1_g185490' => 'hma', 'Hma1.2p1_0592F.1_g185500' => 'hma', 'Hma1.2p1_0592F.1_g185510' => 'hma', 'Hma1.2p1_0592F.1_g185520' => 'hma', 'Hma1.2p1_0592F.1_g185530' => 'hma', 'Hma1.2p1_0818F.1_g223450' => 'hma', 'HPP92_009708' => 'vpl', 'HPP92_009793' => 'vpl', 'HPP92_009796' => 'vpl', 'HPP92_009797' => 'vpl', 'HPP92_014940' => 'vpl', 'HPP92_014988' => 'vpl', 'Hund02463' => 'sun', 'Hund02760' => 'sun', 'Hund05071' => 'sun', 'Hund10108' => 'sun', 'Hund11204' => 'sun', 'Hund14016' => 'sun', 'Hund16464' => 'sun', 'Lalb_Chr09g0333391' => 'lal', 'Lalb_Chr11g0070461' => 'lal', 'Lalb_Chr12g0201671' => 'lal', 'Lalb_Chr13g0297161' => 'lal', 'Lj1g0002823' => 'lja', 'Lj3C1074T6' => 'lonja', 'Lj4A212T28' => 'lonja', 'Lj4g0005516' => 'lja', 'Lj4g0013705' => 'lja', 'Lj4g0027865' => 'lja', 'Lj5C92G16' => 'lonja', 'Lj5C92T12' => 'lonja', 'Lj7C596T3' => 'lonja', 'Lj9A446G59' => 'lonja', 'Lj9A482G21' => 'lonja', 'Lsat_1_v5_gn_1_28261' => 'lsa', 'Lsat_1_v5_gn_1_28281' => 'lsa', 'Lsat_1_v5_gn_1_32721' => 'lsa', 'Lsat_1_v5_gn_4_151760' => 'lsa', 'Lsat_1_v5_gn_4_2120' => 'lsa', 'Lsat_1_v5_gn_4_75761' => 'lsa', 'Lsat_1_v5_gn_5_10920' => 'lsa', 'Manes.02G099900' => 'mes', 'Manes.11G096200' => 'mes', 'Manes.12G007200' => 'mes', 'Manes.14G048300' => 'mes', 'Manes.17G114700' => 'mes', 'Mapoly0002s0070' => 'mpo', 'Mapoly0029s0099' => 'mpo', 'MBI07_g24742_MAGBIO' => 'mbi', 'MBI10_g27988_MAGBIO' => 'mbi', 'MBI11_g13057_MAGBIO' => 'mbi', 'MD02G1137200' => 'mdo', 'MD06G1137200' => 'mdo', 'MD07G1122300' => 'mdo', 'MD09G1078200' => 'mdo', 'MD13G1123700' => 'mdo', 'MD14G1151900' => 'mdo', 'MD17G1030900' => 'mdo', 'MD17G1068200' => 'mdo', 'MD17G1068600' => 'mdo', 'Medtr3g077540' => 'mtr', 'Medtr4g105530' => 'mtr', 'Medtr8g076580' => 'mtr', 'Medtr8g076590' => 'mtr', 'Medtr8g096410' => 'mtr', 'MELO3C016411.2' => 'cme', 'MELO3C017780.2' => 'cme', 'MELO3C022560.2' => 'cme', 'MELO3C026187.2' => 'cme', 'MELO3C026286.2' => 'cme', 'MELO3C032854.2' => 'cme', 'Migut.H02495' => 'egut', 'Migut.I00561' => 'egut', 'Migut.K01015' => 'egut', 'Migut.K01016' => 'egut', 'Migut.L00743' => 'egut', 'Migut.L00744' => 'egut', 'Migut.L00746' => 'egut', 'Migut.L00798' => 'egut', 'Migut.L00799' => 'egut', 'Migut.N02096' => 'egut', 'MSTRG.11259' => 'ama', 'MSTRG.23142' => 'ama', 'MSTRG.2499' => 'ama', 'Nitab4.5_0000003g0730' => 'nta', 'Nitab4.5_0000137g0020' => 'nta', 'Nitab4.5_0000721g0210' => 'nta', 'Nitab4.5_0000723g0050' => 'nta', 'Nitab4.5_0000913g0070' => 'nta', 'Nitab4.5_0001332g0040' => 'nta', 'Nitab4.5_0001771g0050' => 'nta', 'Nitab4.5_0001918g0050' => 'nta', 'Nitab4.5_0002686g0030' => 'nta', 'Nitab4.5_0003156g0020' => 'nta', 'Nitab4.5_0003383g0040' => 'nta', 'Nitab4.5_0003918g0010' => 'nta', 'Nitab4.5_0006760g0010' => 'nta', 'Nn1g05981' => 'nnu', 'Nn1g06288' => 'nnu', 'Nn3g16371' => 'nnu', 'Nn3g16786' => 'nnu', 'Nn4g22232' => 'nnu', 'Oeu005144.1' => 'oeu', 'Oeu005145.1' => 'oeu', 'Oeu011348.1' => 'oeu', 'Oeu016415.1' => 'oeu', 'Oeu023501.1' => 'oeu', 'Oeu044473.1' => 'oeu', 'Oeu048892.2' => 'oeu', 'Os01g0549200' => 'osa', 'Os02g0469300' => 'osa', 'Os04g0311100' => 'osa', 'Os06g0474900' => 'osa', 'Os10g0181700' => 'osa', 'Os11g0454800' => 'osa', 'Peaxi162Scf00037g00714' => 'pax', 'Peaxi162Scf00084g01217' => 'pax', 'Peaxi162Scf00257g00217' => 'pax', 'Peaxi162Scf00516g00215' => 'pax', 'Peaxi162Scf00689g00123' => 'pax', 'PGR044G2719' => 'pgr', 'PGR083G1360' => 'pgr', 'PGR102G2849' => 'pgr', 'PGR119G2534' => 'pgr', 'PGSC0003DMG400003538' => 'stu', 'PGSC0003DMG400028138' => 'stu', 'PGSC0003DMG400031732' => 'stu', 'PGSC0003DMG400038165' => 'stu', 'Phvul.002G284600' => 'pvu', 'Phvul.003G258200' => 'pvu', 'Phvul.009G176500' => 'pvu', 'Potri.003G167201' => 'ptr', 'Potri.005G118400' => 'ptr', 'Potri.012G089000' => 'ptr', 'Potri.012G102800' => 'ptr', 'Potri.015G079400' => 'ptr', 'Potri.015G100900' => 'ptr', 'Pp3c14_9810' => 'ppa', 'Pp3c15_10450' => 'ppa', 'Pp3c20_19150' => 'ppa', 'Pp3c23_12740' => 'ppa', 'Pp3c23_6310' => 'ppa', 'Pp3c24_3720' => 'ppa', 'Pp3c27_2580' => 'ppa', 'Pp3c9_8990' => 'ppa', 'PRCOL_00002854' => 'pco', 'Prupe.1G221200' => 'ppe', 'Prupe.3G289000' => 'ppe', 'Prupe.5G147000' => 'ppe', 'Prupe.6G157300' => 'ppe', 'Prupe.7G163400' => 'ppe', 'Psat0s2177g0040' => 'psa', 'Psat3g174760' => 'psa', 'Psat3g192160' => 'psa', 'Psat4g058520' => 'psa', 'Psat4g096840' => 'psa', 'Psat7g037320' => 'psa', 'PSO017G1274' => 'pso', 'PSO017G5166' => 'pso', 'PSO063G4558' => 'pso', 'PSO170G4458' => 'pso', 'PSO170G5005' => 'pso', 'PSO210G6156' => 'pso', 'PSO210G6635' => 'pso', 'PSO210G7397' => 'pso', 'PSO210G7700' => 'pso', 'PSO455G0035' => 'pso', 'PSO455G0180' => 'pso', 'PSO478G4515' => 'pso', 'PSO832G1305' => 'pso', 'PSO832G3489' => 'pso', 'QL02p075247' => 'qlo', 'QL03p051148' => 'qlo', 'QL05p010313' => 'qlo', 'QL06p034627' => 'qlo', 'QL10p001889' => 'qlo', 'QL10p010846' => 'qlo', 'RcHm_v2.0_Chr1g0350621' => 'rch', 'RcHm_v2.0_Chr1g0350641' => 'rch', 'RcHm_v2.0_Chr2g0092891' => 'rch', 'RcHm_v2.0_Chr2g0100251' => 'rch', 'RcHm_v2.0_Chr2g0158661' => 'rch', 'RcHm_v2.0_Chr2g0172741' => 'rch', 'RcHm_v2.0_Chr4g0429571' => 'rch', 'RcHm_v2.0_Chr5g0042471' => 'rch', 'RcHm_v2.0_Chr7g0189451' => 'rch', 'Rhsim08G0052000' => 'rsi', 'Rhsim08G0174400' => 'rsi', 'Rhsim08G0193200' => 'rsi', 'Rhsim10G0214800' => 'rsi', 'Rhsim10G0214900' => 'rsi', 'Rhsim10G0215000' => 'rsi', 'Rhsim12G0022900' => 'rsi', 'Rhsim12G0177500' => 'rsi', 'Rhsim12G0177700' => 'rsi', 'Sabra03G0122600' => 'sbr', 'Sabra05G0097400' => 'sbr', 'Sabra12G0064100' => 'sbr', 'Sabra15G0121300' => 'sbr', 'SalBow2G0642' => 'sbo', 'SalBow5G2667' => 'sbo', 'SalBow5G4873' => 'sbo', 'SalBow8G2395' => 'sbo', 'Sc03g0003290' => 'sci', 'Sc10g0010130' => 'sci', 'Sc22g0003650' => 'sci', 'Sed0001603' => 'sed', 'Sed0004259' => 'sed', 'Sed0006789' => 'sed', 'Sed0011838' => 'sed', 'Sed0012964' => 'sed', 'Sed0016383' => 'sed', 'Sed0019010' => 'sed', 'Sed0020188' => 'sed', 'SEGI_04702' => 'sgi', 'SEGI_17231' => 'sgi', 'SEGI_18877' => 'sgi', 'SEGI_25196' => 'sgi', 'SEGI_25515' => 'sgi', 'SEGI_28445' => 'sgi', 'SEGI_37452' => 'sgi', 'SGA_v2.0_scaffold188G40336' => 'sas', 'SGA_v2.0_scaffold228G43247' => 'sas', 'SGA_v2.0_scaffold280G46853' => 'sas', 'SGA_v2.0_scaffold34G13808' => 'sas', 'SGA_v2.0_scaffold40G15576' => 'sas', 'SGA_v2.0_scaffold611G53188' => 'sas', 'SGA_v2.0_scaffold78G25461' => 'sas', 'SGA_v2.0_scaffold90G27888' => 'sas', 'SHI08601' => 'shi', 'SHI08606' => 'shi', 'SHI17117' => 'shi', 'SHI17119' => 'shi', 'SMO118G0201' => 'smo', 'SMO169G0247' => 'smo', 'SMO176G0006' => 'smo', 'SMO176G0015' => 'smo', 'SMO202G0006' => 'smo', 'SMO240G0050' => 'smo', 'SMO286G0009' => 'smo', 'SMO338G0033' => 'smo', 'SMO356G0533' => 'smo', 'SMO364G0382' => 'smo', 'SMO367G0166' => 'smo', 'SMO367G1098' => 'smo', 'Solyc01g009920.3' => 'sly', 'Solyc01g099300.3' => 'sly', 'Solyc02g084700.3' => 'sly', 'Solyc03g097520.3' => 'sly', 'Solyc06g071580.3' => 'sly', 'Solyc10g081760.3' => 'sly', 'Sopen01g005480' => 'spe', 'Sopen01g042850' => 'spe', 'Sopen02g029370' => 'spe', 'Sopen03g028280' => 'spe', 'Sopen06g027870' => 'spe', 'Sopen10g032270' => 'spe', 'Sp5g18180' => 'spa', 'Sp6g12880' => 'spa', 'Sp6g30850' => 'spa', 'Sp7g22960' => 'spa', 'Sp7g34010' => 'spa', 'SpUn1326_0010' => 'spa', 'TAR371G0242' => 'tar', 'TAR622G0638' => 'tar', 'TAR628G1548' => 'tar', 'TAR629G1079' => 'tar', 'TAR629G3413' => 'tar', 'THA.LOC104804249' => 'tha', 'THA.LOC104808315' => 'tha', 'THA.LOC104809238' => 'tha', 'THA.LOC104825484' => 'tha', 'Thecc.01G025500' => 'tca', 'Thecc.03G015800' => 'tca', 'Thecc.03G018000' => 'tca', 'Thecc.03G134800' => 'tca', 'Thecc.04G014700' => 'tca', 'Thhalv10006991m.g' => 'esa', 'Thhalv10012707m.g' => 'esa', 'Thhalv10015739m.g' => 'esa', 'Thhalv10024553m.g' => 'esa', 'Thhalv10024673m.g' => 'esa', 'Thhalv10029187m.g' => 'esa', 'TPR.G12971' => 'tpr', 'TPR.G29396' => 'tpr', 'TPR.G33376' => 'tpr', 'TPR.G35508' => 'tpr', 'TPR.G35516' => 'tpr', 'TPR.G37317' => 'tpr', 'TPR.G37389' => 'tpr', 'TPR.G37523' => 'tpr', 'TPR.G559' => 'tpr', 'TWI14G0070' => 'twi', 'TWI14G0729' => 'twi', 'TWI18G0596' => 'twi', 'TWI39G0780' => 'twi', 'TWI39G0850' => 'twi', 'TWI73G1052' => 'twi', 'unitig_52.g17485' => 'ugi', 'unitig_61.g26355' => 'ugi', 'vmacro01040' => 'vma', 'vmacro16731' => 'vma', 'vmacro18270' => 'vma', 'vmacro19142' => 'vma', 'vmacro19407' => 'vma', 'vmacro19408' => 'vma', 'vmacro21899' => 'vma', 'vmacro21900' => 'vma', 'vmacro21901' => 'vma', 'VMungo0251G0490' => 'vmu', 'VMungo0251G1748' => 'vmu', 'VMungo1309G0421' => 'vmu', 'Zm00001eb086500' => 'zma', 'Zm00001eb150680' => 'zma', 'Zm00001eb162330' => 'zma', 'Zm00001eb203130' => 'zma', 'Zm00001eb369480' => 'zma', 'Zm00001eb382340' => 'zma', 'Zm00001eb416360' => 'zma' ), 'gf_id' => 'HOM05D000902', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000902' ), 'data_identifier' => 'HOM05D000902', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000902', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '663', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02470' => 'bna', 'A01p16260' => 'bna', 'A02p01680' => 'bna', 'A03p16600' => 'bna', 'A03p55660' => 'bna', 'A03p64160' => 'bna', 'A03p64170' => 'bna', 'A08p31900' => 'bna', 'A09p59530' => 'bna', 'A10p08230' => 'bna', 'A10p25090' => 'bna', 'Aa31LG3G7100' => 'aar', 'Aa31LG3G7110' => 'aar', 'Aa31LG6G13160' => 'aar', 'Aa31LG7G10770' => 'aar', 'Aa31LG7G3830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2723' => 'aag', 'Actinidia08045' => 'ach', 'Actinidia08888' => 'ach', 'Actinidia18333' => 'ach', 'Actinidia19334' => 'ach', 'Actinidia25552' => 'ach', 'Actinidia26089' => 'ach', 'Actinidia30615' => 'ach', 'Actinidia30616' => 'ach', 'Actinidia33083' => 'ach', 'Actinidia35762' => 'ach', 'Ah.02g110620' => 'amhyb', 'Ah.11g046390' => 'amhyb', 'AL1G31670' => 'aly', 'AL6G23730' => 'aly', 'AL7G14740' => 'aly', 'AL7G14750' => 'aly', 'AL7G14760' => 'aly', 'AL7G28220' => 'aly', 'AL8G24940' => 'aly', 'Aqoxy3G01665' => 'aox', 'Aqoxy3G02853' => 'aox', 'Aqoxy5G01513' => 'aox', 'Aqoxy5G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8SKA4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ75LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKDA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0LJZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7REX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZP4YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWX7I5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2QKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS0L9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPCD8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q161UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC7XCF' => 'arhy', 'AT1G19100' => 'ath', 'AT4G24970' => 'ath', 'AT4G36270' => 'ath', 'AT4G36280' => 'ath', 'AT4G36290' => 'ath', 'AT5G13130' => 'ath', 'AT5G50780' => 'ath', 'ATR0582G266' => 'atr', 'ATR0661G195' => 'atr', 'ATR1152G031' => 'atr', 'Atru.chr11.2382' => 'acertr', 'Atru.chr12.2337' => 'acertr', 'Atru.chr3.744' => 'acertr', 'Atru.chr6.1870' => 'acertr', 'Atru.chr9.2515' => 'acertr', 'AUR62004120' => 'cqu', 'AUR62005667' => 'cqu', 'AUR62007634' => 'cqu', 'AUR62008186' => 'cqu', 'AUR62008187' => 'cqu', 'AUR62008188' => 'cqu', 'AUR62027954' => 'cqu', 'AUR62028766' => 'cqu', 'AUR62028767' => 'cqu', 'AUR62028768' => 'cqu', 'AUR62028886' => 'cqu', 'AUR62029563' => 'cqu', 'AUR62038832' => 'cqu', 'BcaB01g04149' => 'bca', 'BcaB03g12940' => 'bca', 'BcaB03g13090' => 'bca', 'BcaB03g14466' => 'bca', 'BcaB05g24035' => 'bca', 'BcaC01g06050' => 'bca', 'BcaC04g19148' => 'bca', 'BcaC04g20761' => 'bca', 'BcaC06g32845' => 'bca', 'BcaC07g41274' => 'bca', 'BcaC09g50827' => 'bca', 'BcaNung00741' => 'bca', 'BcaNung00742' => 'bca', 'BcaNung01859' => 'bca', 'BcaNung03985' => 'bca', 'BcaNung03989' => 'bca', 'BcaNung05661' => 'bca', 'BolC1t00257H' => 'bol', 'BolC1t01956H' => 'bol', 'BolC2t06534H' => 'bol', 'BolC3t14334H' => 'bol', 'BolC5t30451H' => 'bol', 'BolC7t45880H' => 'bol', 'BolC7t46586H' => 'bol', 'BolC8t49301H' => 'bol', 'BolC8t51837H' => 'bol', 'BolC9t56822H' => 'bol', 'BolC9t59235H' => 'bol', 'BraA01t00234Z' => 'bra', 'BraA01t01563Z' => 'bra', 'BraA02t05147Z' => 'bra', 'BraA03t10947Z' => 'bra', 'BraA03t14633Z' => 'bra', 'BraA08t35112Z' => 'bra', 'BraA09t41330Z' => 'bra', 'BraA10t44570Z' => 'bra', 'C01p02670' => 'bna', 'C01p20260' => 'bna', 'C02p05890' => 'bna', 'C03p19530' => 'bna', 'C05p17470' => 'bna', 'C07p53900' => 'bna', 'C07p61630' => 'bna', 'C08p16800' => 'bna', 'C08p42810' => 'bna', 'C09p39480' => 'bna', 'C09p63980' => 'bna', 'CAN.G1001.7' => 'can', 'CAN.G1034.55' => 'can', 'CAN.G143.7' => 'can', 'CAN.G3340.1' => 'can', 'CAN.G358.19' => 'can', 'CAN.G373.2' => 'can', 'CAN.G674.16' => 'can', 'CAN.G674.17' => 'can', 'CAN.G674.18' => 'can', 'CAN.G732.2' => 'can', 'CAN.G732.3' => 'can', 'CAN.G993.39' => 'can', 'CANSAT01G2052' => 'cansat', 'CANSAT80G0070' => 'cansat', 'CANSAT80G0483' => 'cansat', 'CANSAT80G0625' => 'cansat', 'CARHR019690' => 'chi', 'CARHR080280' => 'chi', 'CARHR152750' => 'chi', 'CARHR152760' => 'chi', 'CARHR152770' => 'chi', 'CARHR200340' => 'chi', 'CARHR232370' => 'chi', 'CARHR244670' => 'chi', 'CARHR244680' => 'chi', 'CARHR257520' => 'chi', 'Carub.0001s1872' => 'cru', 'Carub.0006s1130' => 'cru', 'Carub.0007s0396' => 'cru', 'Carub.0007s0397' => 'cru', 'Carub.0007s1608' => 'cru', 'Carub.0008s1068' => 'cru', 'Carub.0008s1077' => 'cru', 'Ca_16158_v3' => 'car', 'Ca_17571_v3' => 'car', 'Ca_21936_v3' => 'car', 'Ca_22350_v3' => 'car', 'CBR_g22445' => 'cbr', 'CBR_g26290' => 'cbr', 'Cc04_g09610' => 'ccan', 'Cc04_g12280' => 'ccan', 'Cc07_g10230' => 'ccan', 'CDE02G0093' => 'cde', 'CDE02G0701' => 'cde', 'CDE04G1050' => 'cde', 'CDE05G1833' => 'cde', 'CDE05G3058' => 'cde', 'CDE05G3380' => 'cde', 'CDE06G0536' => 'cde', 'Cfa006923' => 'cfa', 'Cfa009402' => 'cfa', 'Cfa018751' => 'cfa', 'Cfa019164' => 'cfa', 'Cfa022935' => 'cfa', 'Ciclev10019081m.g' => 'ccl', 'Ciclev10025076m.g' => 'ccl', 'Ciclev10030712m.g' => 'ccl', 'Ciclev10033760m.g' => 'ccl', 'CiPaw.05G105600' => 'cil', 'CiPaw.08G136700' => 'cil', 'CiPaw.11G003900' => 'cil', 'CiPaw.11G023700' => 'cil', 'CiPaw.12G003700' => 'cil', 'ClCG06G017100' => 'cla', 'ClCG06G018110' => 'cla', 'ClCG07G008800' => 'cla', 'ClCG07G015330' => 'cla', 'COL.COLO4_13698' => 'col', 'COL.COLO4_16659' => 'col', 'COL.COLO4_21986' => 'col', 'COL.COLO4_24049' => 'col', 'COL.COLO4_29061' => 'col', 'COL.COLO4_29075' => 'col', 'COL.COLO4_30094' => 'col', 'Cpa.g.c33689' => 'cpa', 'Cpa.g.sc108.39' => 'cpa', 'Cpa.g.sc108.41' => 'cpa', 'Cpa.g.sc1163.1' => 'cpa', 'Cpa.g.sc4.155' => 'cpa', 'Cpa.g.sc6.194' => 'cpa', 'CsaV3_1G000340' => 'csa', 'CsaV3_1G001400' => 'csa', 'CsaV3_4G002220' => 'csa', 'CsaV3_4G005370' => 'csa', 'CSS0007487' => 'camsi', 'CSS0008066' => 'camsi', 'CSS0009120' => 'camsi', 'CSS0015512' => 'camsi', 'CSS0022409' => 'camsi', 'CSS0025358' => 'camsi', 'CSS0044547' => 'camsi', 'DCAR_013057' => 'dca', 'DCAR_015058' => 'dca', 'DCAR_016027' => 'dca', 'DCAR_017327' => 'dca', 'DCAR_020743' => 'dca', 'DCAR_026157' => 'dca', 'DCAR_032339' => 'dca', 'DCAR_032340' => 'dca', 'Dinv11200' => 'din', 'Dinv11201' => 'din', 'Dinv20631' => 'din', 'Dinv23182' => 'din', 'Dinv33466' => 'din', 'Dinv33583' => 'din', 'Dinv38565' => 'din', 'Duzib068G0200' => 'dzi', 'Duzib147G0132' => 'dzi', 'Duzib147G0635' => 'dzi', 'Duzib205G1670' => 'dzi', 'Duzib251G0606' => 'dzi', 'ECA232G3336' => 'eca', 'ECA232G3763' => 'eca', 'ECA232G4845' => 'eca', 'ECA234G1607' => 'eca', 'ECA246G0932' => 'eca', 'ECA247G0781' => 'eca', 'ECA247G1932' => 'eca', 'ECA247G2079' => 'eca', 'ECA247G3338' => 'eca', 'ECA247G4115' => 'eca', 'EL10Ac3g06552' => 'bvu', 'EL10Ac5g10721' => 'bvu', 'EL10Ac5g10722' => 'bvu', 'EL10Ac5g10723' => 'bvu', 'EL10Ac5g11361' => 'bvu', 'EL10Ac6g13553' => 'bvu', 'EL10As8g23872' => 'bvu', 'Eucgr.B00250' => 'egr', 'Eucgr.B00251' => 'egr', 'Eucgr.B03533' => 'egr', 'Eucgr.I02381' => 'egr', 'Eucgr.K02700' => 'egr', 'FAN02G0174' => 'fan', 'FAN02G3146' => 'fan', 'FAN04G1672' => 'fan', 'FAN04G2273' => 'fan', 'FAN05G2791' => 'fan', 'FAN05G4035' => 'fan', 'FAN07G0834' => 'fan', 'FAN08G1198' => 'fan', 'FAN09G4182' => 'fan', 'FAN12G0496' => 'fan', 'FAN13G1027' => 'fan', 'FAN13G2951' => 'fan', 'FAN14G0705' => 'fan', 'FAN14G0720' => 'fan', 'FAN17G0201' => 'fan', 'FAN17G2665' => 'fan', 'FAN18G1456' => 'fan', 'FAN18G1525' => 'fan', 'FAN18G3500' => 'fan', 'FAN28G2670' => 'fan', 'FvH4_1g12391' => 'fve', 'FvH4_4g23220' => 'fve', 'FvH4_5g08810' => 'fve', 'FvH4_5g28960' => 'fve', 'FvH4_6g42820' => 'fve', 'FvH4_6g51110' => 'fve', 'Glyma.02G051802' => 'gma', 'Glyma.04G185300' => 'gma', 'Glyma.05G202900' => 'gma', 'Glyma.08G010300' => 'gma', 'Glyma.16G131900' => 'gma', 'Glyma.17G087900' => 'gma', 'Gohir.A07G048600' => 'ghi', 'Gohir.A11G179000' => 'ghi', 'Gohir.A12G140900' => 'ghi', 'Gohir.A12G140950' => 'ghi', 'Gohir.A12G191700' => 'ghi', 'Gohir.A13G086300' => 'ghi', 'Gohir.D07G052900' => 'ghi', 'Gohir.D11G186600' => 'ghi', 'Gohir.D12G145575' => 'ghi', 'Gohir.D12G145650' => 'ghi', 'Gohir.D12G145725' => 'ghi', 'Gohir.D12G194050' => 'ghi', 'Gohir.D13G091800' => 'ghi', 'Gorai.001G055900' => 'gra', 'Gorai.007G198400' => 'gra', 'Gorai.008G157000' => 'gra', 'Gorai.008G157100' => 'gra', 'Gorai.008G208700' => 'gra', 'Gorai.010G138700' => 'gra', 'GSVIVG01000977001' => 'vvi', 'GSVIVG01007708001' => 'vvi', 'GSVIVG01008587001' => 'vvi', 'GSVIVG01018849001' => 'vvi', 'GSVIVG01032432001' => 'vvi', 'HanXRQChr02g0034131' => 'han', 'HanXRQChr02g0035981' => 'han', 'HanXRQChr02g0035991' => 'han', 'HanXRQChr05g0155611' => 'han', 'HanXRQChr05g0155621' => 'han', 'HanXRQChr08g0236501' => 'han', 'HanXRQChr09g0261321' => 'han', 'HanXRQChr09g0272081' => 'han', 'HanXRQChr10g0310741' => 'han', 'HanXRQChr11g0325591' => 'han', 'HanXRQChr12g0385691' => 'han', 'HanXRQChr13g0387801' => 'han', 'HanXRQChr15g0463011' => 'han', 'Haze_03826' => 'cav', 'Haze_03827' => 'cav', 'Haze_07183' => 'cav', 'Haze_07537' => 'cav', 'Haze_07539' => 'cav', 'Haze_12461' => 'cav', 'Haze_16115' => 'cav', 'Haze_16808' => 'cav', 'Haze_18531' => 'cav', 'Hma1.2p1_0046F.1_g026700' => 'hma', 'Hma1.2p1_0046F.1_g026710' => 'hma', 'Hma1.2p1_0168F.1_g074340' => 'hma', 'Hma1.2p1_0266F.1_g107030' => 'hma', 'Hma1.2p1_0266F.1_g107060' => 'hma', 'Hma1.2p1_0275F.1_g110510' => 'hma', 'Hma1.2p1_0592F.1_g185490' => 'hma', 'Hma1.2p1_0592F.1_g185500' => 'hma', 'Hma1.2p1_0592F.1_g185510' => 'hma', 'Hma1.2p1_0592F.1_g185520' => 'hma', 'Hma1.2p1_0592F.1_g185530' => 'hma', 'Hma1.2p1_0818F.1_g223450' => 'hma', 'HPP92_009708' => 'vpl', 'HPP92_009793' => 'vpl', 'HPP92_009796' => 'vpl', 'HPP92_009797' => 'vpl', 'HPP92_014940' => 'vpl', 'HPP92_014988' => 'vpl', 'Hund02463' => 'sun', 'Hund02760' => 'sun', 'Hund05071' => 'sun', 'Hund10108' => 'sun', 'Hund11204' => 'sun', 'Hund14016' => 'sun', 'Hund16464' => 'sun', 'Lalb_Chr09g0333391' => 'lal', 'Lalb_Chr11g0070461' => 'lal', 'Lalb_Chr12g0201671' => 'lal', 'Lalb_Chr13g0297161' => 'lal', 'Lj1g0002823' => 'lja', 'Lj3C1074T6' => 'lonja', 'Lj4A212T28' => 'lonja', 'Lj4g0005516' => 'lja', 'Lj4g0013705' => 'lja', 'Lj4g0027865' => 'lja', 'Lj5C92G16' => 'lonja', 'Lj5C92T12' => 'lonja', 'Lj7C596T3' => 'lonja', 'Lj9A446G59' => 'lonja', 'Lj9A482G21' => 'lonja', 'Lsat_1_v5_gn_1_28261' => 'lsa', 'Lsat_1_v5_gn_1_28281' => 'lsa', 'Lsat_1_v5_gn_1_32721' => 'lsa', 'Lsat_1_v5_gn_4_151760' => 'lsa', 'Lsat_1_v5_gn_4_2120' => 'lsa', 'Lsat_1_v5_gn_4_75761' => 'lsa', 'Lsat_1_v5_gn_5_10920' => 'lsa', 'Manes.02G099900' => 'mes', 'Manes.11G096200' => 'mes', 'Manes.12G007200' => 'mes', 'Manes.14G048300' => 'mes', 'Manes.17G114700' => 'mes', 'Mapoly0002s0070' => 'mpo', 'Mapoly0029s0099' => 'mpo', 'MBI07_g24742_MAGBIO' => 'mbi', 'MBI10_g27988_MAGBIO' => 'mbi', 'MBI11_g13057_MAGBIO' => 'mbi', 'MD02G1137200' => 'mdo', 'MD06G1137200' => 'mdo', 'MD07G1122300' => 'mdo', 'MD09G1078200' => 'mdo', 'MD13G1123700' => 'mdo', 'MD14G1151900' => 'mdo', 'MD17G1030900' => 'mdo', 'MD17G1068200' => 'mdo', 'MD17G1068600' => 'mdo', 'Medtr3g077540' => 'mtr', 'Medtr4g105530' => 'mtr', 'Medtr8g076580' => 'mtr', 'Medtr8g076590' => 'mtr', 'Medtr8g096410' => 'mtr', 'MELO3C016411.2' => 'cme', 'MELO3C017780.2' => 'cme', 'MELO3C022560.2' => 'cme', 'MELO3C026187.2' => 'cme', 'MELO3C026286.2' => 'cme', 'MELO3C032854.2' => 'cme', 'Migut.H02495' => 'egut', 'Migut.I00561' => 'egut', 'Migut.K01015' => 'egut', 'Migut.K01016' => 'egut', 'Migut.L00743' => 'egut', 'Migut.L00744' => 'egut', 'Migut.L00746' => 'egut', 'Migut.L00798' => 'egut', 'Migut.L00799' => 'egut', 'Migut.N02096' => 'egut', 'MSTRG.11259' => 'ama', 'MSTRG.23142' => 'ama', 'MSTRG.2499' => 'ama', 'Nitab4.5_0000003g0730' => 'nta', 'Nitab4.5_0000137g0020' => 'nta', 'Nitab4.5_0000721g0210' => 'nta', 'Nitab4.5_0000723g0050' => 'nta', 'Nitab4.5_0000913g0070' => 'nta', 'Nitab4.5_0001332g0040' => 'nta', 'Nitab4.5_0001771g0050' => 'nta', 'Nitab4.5_0001918g0050' => 'nta', 'Nitab4.5_0002686g0030' => 'nta', 'Nitab4.5_0003156g0020' => 'nta', 'Nitab4.5_0003383g0040' => 'nta', 'Nitab4.5_0003918g0010' => 'nta', 'Nitab4.5_0006760g0010' => 'nta', 'Nn1g05981' => 'nnu', 'Nn1g06288' => 'nnu', 'Nn3g16371' => 'nnu', 'Nn3g16786' => 'nnu', 'Nn4g22232' => 'nnu', 'Oeu005144.1' => 'oeu', 'Oeu005145.1' => 'oeu', 'Oeu011348.1' => 'oeu', 'Oeu016415.1' => 'oeu', 'Oeu023501.1' => 'oeu', 'Oeu044473.1' => 'oeu', 'Oeu048892.2' => 'oeu', 'Os01g0549200' => 'osa', 'Os02g0469300' => 'osa', 'Os04g0311100' => 'osa', 'Os06g0474900' => 'osa', 'Os10g0181700' => 'osa', 'Os11g0454800' => 'osa', 'Peaxi162Scf00037g00714' => 'pax', 'Peaxi162Scf00084g01217' => 'pax', 'Peaxi162Scf00257g00217' => 'pax', 'Peaxi162Scf00516g00215' => 'pax', 'Peaxi162Scf00689g00123' => 'pax', 'PGR044G2719' => 'pgr', 'PGR083G1360' => 'pgr', 'PGR102G2849' => 'pgr', 'PGR119G2534' => 'pgr', 'PGSC0003DMG400003538' => 'stu', 'PGSC0003DMG400028138' => 'stu', 'PGSC0003DMG400031732' => 'stu', 'PGSC0003DMG400038165' => 'stu', 'Phvul.002G284600' => 'pvu', 'Phvul.003G258200' => 'pvu', 'Phvul.009G176500' => 'pvu', 'Potri.003G167201' => 'ptr', 'Potri.005G118400' => 'ptr', 'Potri.012G089000' => 'ptr', 'Potri.012G102800' => 'ptr', 'Potri.015G079400' => 'ptr', 'Potri.015G100900' => 'ptr', 'Pp3c14_9810' => 'ppa', 'Pp3c15_10450' => 'ppa', 'Pp3c20_19150' => 'ppa', 'Pp3c23_12740' => 'ppa', 'Pp3c23_6310' => 'ppa', 'Pp3c24_3720' => 'ppa', 'Pp3c27_2580' => 'ppa', 'Pp3c9_8990' => 'ppa', 'PRCOL_00002854' => 'pco', 'Prupe.1G221200' => 'ppe', 'Prupe.3G289000' => 'ppe', 'Prupe.5G147000' => 'ppe', 'Prupe.6G157300' => 'ppe', 'Prupe.7G163400' => 'ppe', 'Psat0s2177g0040' => 'psa', 'Psat3g174760' => 'psa', 'Psat3g192160' => 'psa', 'Psat4g058520' => 'psa', 'Psat4g096840' => 'psa', 'Psat7g037320' => 'psa', 'PSO017G1274' => 'pso', 'PSO017G5166' => 'pso', 'PSO063G4558' => 'pso', 'PSO170G4458' => 'pso', 'PSO170G5005' => 'pso', 'PSO210G6156' => 'pso', 'PSO210G6635' => 'pso', 'PSO210G7397' => 'pso', 'PSO210G7700' => 'pso', 'PSO455G0035' => 'pso', 'PSO455G0180' => 'pso', 'PSO478G4515' => 'pso', 'PSO832G1305' => 'pso', 'PSO832G3489' => 'pso', 'QL02p075247' => 'qlo', 'QL03p051148' => 'qlo', 'QL05p010313' => 'qlo', 'QL06p034627' => 'qlo', 'QL10p001889' => 'qlo', 'QL10p010846' => 'qlo', 'RcHm_v2.0_Chr1g0350621' => 'rch', 'RcHm_v2.0_Chr1g0350641' => 'rch', 'RcHm_v2.0_Chr2g0092891' => 'rch', 'RcHm_v2.0_Chr2g0100251' => 'rch', 'RcHm_v2.0_Chr2g0158661' => 'rch', 'RcHm_v2.0_Chr2g0172741' => 'rch', 'RcHm_v2.0_Chr4g0429571' => 'rch', 'RcHm_v2.0_Chr5g0042471' => 'rch', 'RcHm_v2.0_Chr7g0189451' => 'rch', 'Rhsim08G0052000' => 'rsi', 'Rhsim08G0174400' => 'rsi', 'Rhsim08G0193200' => 'rsi', 'Rhsim10G0214800' => 'rsi', 'Rhsim10G0214900' => 'rsi', 'Rhsim10G0215000' => 'rsi', 'Rhsim12G0022900' => 'rsi', 'Rhsim12G0177500' => 'rsi', 'Rhsim12G0177700' => 'rsi', 'Sabra03G0122600' => 'sbr', 'Sabra05G0097400' => 'sbr', 'Sabra12G0064100' => 'sbr', 'Sabra15G0121300' => 'sbr', 'SalBow2G0642' => 'sbo', 'SalBow5G2667' => 'sbo', 'SalBow5G4873' => 'sbo', 'SalBow8G2395' => 'sbo', 'Sc03g0003290' => 'sci', 'Sc10g0010130' => 'sci', 'Sc22g0003650' => 'sci', 'Sed0001603' => 'sed', 'Sed0004259' => 'sed', 'Sed0006789' => 'sed', 'Sed0011838' => 'sed', 'Sed0012964' => 'sed', 'Sed0016383' => 'sed', 'Sed0019010' => 'sed', 'Sed0020188' => 'sed', 'SEGI_04702' => 'sgi', 'SEGI_17231' => 'sgi', 'SEGI_18877' => 'sgi', 'SEGI_25196' => 'sgi', 'SEGI_25515' => 'sgi', 'SEGI_28445' => 'sgi', 'SEGI_37452' => 'sgi', 'SGA_v2.0_scaffold188G40336' => 'sas', 'SGA_v2.0_scaffold228G43247' => 'sas', 'SGA_v2.0_scaffold280G46853' => 'sas', 'SGA_v2.0_scaffold34G13808' => 'sas', 'SGA_v2.0_scaffold40G15576' => 'sas', 'SGA_v2.0_scaffold611G53188' => 'sas', 'SGA_v2.0_scaffold78G25461' => 'sas', 'SGA_v2.0_scaffold90G27888' => 'sas', 'SHI08601' => 'shi', 'SHI08606' => 'shi', 'SHI17117' => 'shi', 'SHI17119' => 'shi', 'SMO118G0201' => 'smo', 'SMO169G0247' => 'smo', 'SMO176G0006' => 'smo', 'SMO176G0015' => 'smo', 'SMO202G0006' => 'smo', 'SMO240G0050' => 'smo', 'SMO286G0009' => 'smo', 'SMO338G0033' => 'smo', 'SMO356G0533' => 'smo', 'SMO364G0382' => 'smo', 'SMO367G0166' => 'smo', 'SMO367G1098' => 'smo', 'Solyc01g009920.3' => 'sly', 'Solyc01g099300.3' => 'sly', 'Solyc02g084700.3' => 'sly', 'Solyc03g097520.3' => 'sly', 'Solyc06g071580.3' => 'sly', 'Solyc10g081760.3' => 'sly', 'Sopen01g005480' => 'spe', 'Sopen01g042850' => 'spe', 'Sopen02g029370' => 'spe', 'Sopen03g028280' => 'spe', 'Sopen06g027870' => 'spe', 'Sopen10g032270' => 'spe', 'Sp5g18180' => 'spa', 'Sp6g12880' => 'spa', 'Sp6g30850' => 'spa', 'Sp7g22960' => 'spa', 'Sp7g34010' => 'spa', 'SpUn1326_0010' => 'spa', 'TAR371G0242' => 'tar', 'TAR622G0638' => 'tar', 'TAR628G1548' => 'tar', 'TAR629G1079' => 'tar', 'TAR629G3413' => 'tar', 'THA.LOC104804249' => 'tha', 'THA.LOC104808315' => 'tha', 'THA.LOC104809238' => 'tha', 'THA.LOC104825484' => 'tha', 'Thecc.01G025500' => 'tca', 'Thecc.03G015800' => 'tca', 'Thecc.03G018000' => 'tca', 'Thecc.03G134800' => 'tca', 'Thecc.04G014700' => 'tca', 'Thhalv10006991m.g' => 'esa', 'Thhalv10012707m.g' => 'esa', 'Thhalv10015739m.g' => 'esa', 'Thhalv10024553m.g' => 'esa', 'Thhalv10024673m.g' => 'esa', 'Thhalv10029187m.g' => 'esa', 'TPR.G12971' => 'tpr', 'TPR.G29396' => 'tpr', 'TPR.G33376' => 'tpr', 'TPR.G35508' => 'tpr', 'TPR.G35516' => 'tpr', 'TPR.G37317' => 'tpr', 'TPR.G37389' => 'tpr', 'TPR.G37523' => 'tpr', 'TPR.G559' => 'tpr', 'TWI14G0070' => 'twi', 'TWI14G0729' => 'twi', 'TWI18G0596' => 'twi', 'TWI39G0780' => 'twi', 'TWI39G0850' => 'twi', 'TWI73G1052' => 'twi', 'unitig_52.g17485' => 'ugi', 'unitig_61.g26355' => 'ugi', 'vmacro01040' => 'vma', 'vmacro16731' => 'vma', 'vmacro18270' => 'vma', 'vmacro19142' => 'vma', 'vmacro19407' => 'vma', 'vmacro19408' => 'vma', 'vmacro21899' => 'vma', 'vmacro21900' => 'vma', 'vmacro21901' => 'vma', 'VMungo0251G0490' => 'vmu', 'VMungo0251G1748' => 'vmu', 'VMungo1309G0421' => 'vmu', 'Zm00001eb086500' => 'zma', 'Zm00001eb150680' => 'zma', 'Zm00001eb162330' => 'zma', 'Zm00001eb203130' => 'zma', 'Zm00001eb369480' => 'zma', 'Zm00001eb382340' => 'zma', 'Zm00001eb416360' => 'zma' ) $gf_id = 'HOM05D000902' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000902' ) $data_identifier = 'HOM05D000902' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 13, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 10, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 6, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 9, 'hma' => (int) 12, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 4, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 6, 'ppa' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 6, 'rch' => (int) 9, 'rsi' => (int) 9, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 12, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 3, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416360' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000902', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '663', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02470' => 'bna', 'A01p16260' => 'bna', 'A02p01680' => 'bna', 'A03p16600' => 'bna', 'A03p55660' => 'bna', 'A03p64160' => 'bna', 'A03p64170' => 'bna', 'A08p31900' => 'bna', 'A09p59530' => 'bna', 'A10p08230' => 'bna', 'A10p25090' => 'bna', 'Aa31LG3G7100' => 'aar', 'Aa31LG3G7110' => 'aar', 'Aa31LG6G13160' => 'aar', 'Aa31LG7G10770' => 'aar', 'Aa31LG7G3830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2723' => 'aag', 'Actinidia08045' => 'ach', 'Actinidia08888' => 'ach', 'Actinidia18333' => 'ach', 'Actinidia19334' => 'ach', 'Actinidia25552' => 'ach', 'Actinidia26089' => 'ach', 'Actinidia30615' => 'ach', 'Actinidia30616' => 'ach', 'Actinidia33083' => 'ach', 'Actinidia35762' => 'ach', 'Ah.02g110620' => 'amhyb', 'Ah.11g046390' => 'amhyb', 'AL1G31670' => 'aly', 'AL6G23730' => 'aly', 'AL7G14740' => 'aly', 'AL7G14750' => 'aly', 'AL7G14760' => 'aly', 'AL7G28220' => 'aly', 'AL8G24940' => 'aly', 'Aqoxy3G01665' => 'aox', 'Aqoxy3G02853' => 'aox', 'Aqoxy5G01513' => 'aox', 'Aqoxy5G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8SKA4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ75LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKDA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0LJZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7REX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZP4YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWX7I5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2QKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS0L9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPCD8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q161UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC7XCF' => 'arhy', 'AT1G19100' => 'ath', 'AT4G24970' => 'ath', 'AT4G36270' => 'ath', 'AT4G36280' => 'ath', 'AT4G36290' => 'ath', 'AT5G13130' => 'ath', 'AT5G50780' => 'ath', 'ATR0582G266' => 'atr', 'ATR0661G195' => 'atr', 'ATR1152G031' => 'atr', 'Atru.chr11.2382' => 'acertr', 'Atru.chr12.2337' => 'acertr', 'Atru.chr3.744' => 'acertr', 'Atru.chr6.1870' => 'acertr', 'Atru.chr9.2515' => 'acertr', 'AUR62004120' => 'cqu', 'AUR62005667' => 'cqu', 'AUR62007634' => 'cqu', 'AUR62008186' => 'cqu', 'AUR62008187' => 'cqu', 'AUR62008188' => 'cqu', 'AUR62027954' => 'cqu', 'AUR62028766' => 'cqu', 'AUR62028767' => 'cqu', 'AUR62028768' => 'cqu', 'AUR62028886' => 'cqu', 'AUR62029563' => 'cqu', 'AUR62038832' => 'cqu', 'BcaB01g04149' => 'bca', 'BcaB03g12940' => 'bca', 'BcaB03g13090' => 'bca', 'BcaB03g14466' => 'bca', 'BcaB05g24035' => 'bca', 'BcaC01g06050' => 'bca', 'BcaC04g19148' => 'bca', 'BcaC04g20761' => 'bca', 'BcaC06g32845' => 'bca', 'BcaC07g41274' => 'bca', 'BcaC09g50827' => 'bca', 'BcaNung00741' => 'bca', 'BcaNung00742' => 'bca', 'BcaNung01859' => 'bca', 'BcaNung03985' => 'bca', 'BcaNung03989' => 'bca', 'BcaNung05661' => 'bca', 'BolC1t00257H' => 'bol', 'BolC1t01956H' => 'bol', 'BolC2t06534H' => 'bol', 'BolC3t14334H' => 'bol', 'BolC5t30451H' => 'bol', 'BolC7t45880H' => 'bol', 'BolC7t46586H' => 'bol', 'BolC8t49301H' => 'bol', 'BolC8t51837H' => 'bol', 'BolC9t56822H' => 'bol', 'BolC9t59235H' => 'bol', 'BraA01t00234Z' => 'bra', 'BraA01t01563Z' => 'bra', 'BraA02t05147Z' => 'bra', 'BraA03t10947Z' => 'bra', 'BraA03t14633Z' => 'bra', 'BraA08t35112Z' => 'bra', 'BraA09t41330Z' => 'bra', 'BraA10t44570Z' => 'bra', 'C01p02670' => 'bna', 'C01p20260' => 'bna', 'C02p05890' => 'bna', 'C03p19530' => 'bna', 'C05p17470' => 'bna', 'C07p53900' => 'bna', 'C07p61630' => 'bna', 'C08p16800' => 'bna', 'C08p42810' => 'bna', 'C09p39480' => 'bna', 'C09p63980' => 'bna', 'CAN.G1001.7' => 'can', 'CAN.G1034.55' => 'can', 'CAN.G143.7' => 'can', 'CAN.G3340.1' => 'can', 'CAN.G358.19' => 'can', 'CAN.G373.2' => 'can', 'CAN.G674.16' => 'can', 'CAN.G674.17' => 'can', 'CAN.G674.18' => 'can', 'CAN.G732.2' => 'can', 'CAN.G732.3' => 'can', 'CAN.G993.39' => 'can', 'CANSAT01G2052' => 'cansat', 'CANSAT80G0070' => 'cansat', 'CANSAT80G0483' => 'cansat', 'CANSAT80G0625' => 'cansat', 'CARHR019690' => 'chi', 'CARHR080280' => 'chi', 'CARHR152750' => 'chi', 'CARHR152760' => 'chi', 'CARHR152770' => 'chi', 'CARHR200340' => 'chi', 'CARHR232370' => 'chi', 'CARHR244670' => 'chi', 'CARHR244680' => 'chi', 'CARHR257520' => 'chi', 'Carub.0001s1872' => 'cru', 'Carub.0006s1130' => 'cru', 'Carub.0007s0396' => 'cru', 'Carub.0007s0397' => 'cru', 'Carub.0007s1608' => 'cru', 'Carub.0008s1068' => 'cru', 'Carub.0008s1077' => 'cru', 'Ca_16158_v3' => 'car', 'Ca_17571_v3' => 'car', 'Ca_21936_v3' => 'car', 'Ca_22350_v3' => 'car', 'CBR_g22445' => 'cbr', 'CBR_g26290' => 'cbr', 'Cc04_g09610' => 'ccan', 'Cc04_g12280' => 'ccan', 'Cc07_g10230' => 'ccan', 'CDE02G0093' => 'cde', 'CDE02G0701' => 'cde', 'CDE04G1050' => 'cde', 'CDE05G1833' => 'cde', 'CDE05G3058' => 'cde', 'CDE05G3380' => 'cde', 'CDE06G0536' => 'cde', 'Cfa006923' => 'cfa', 'Cfa009402' => 'cfa', 'Cfa018751' => 'cfa', 'Cfa019164' => 'cfa', 'Cfa022935' => 'cfa', 'Ciclev10019081m.g' => 'ccl', 'Ciclev10025076m.g' => 'ccl', 'Ciclev10030712m.g' => 'ccl', 'Ciclev10033760m.g' => 'ccl', 'CiPaw.05G105600' => 'cil', 'CiPaw.08G136700' => 'cil', 'CiPaw.11G003900' => 'cil', 'CiPaw.11G023700' => 'cil', 'CiPaw.12G003700' => 'cil', 'ClCG06G017100' => 'cla', 'ClCG06G018110' => 'cla', 'ClCG07G008800' => 'cla', 'ClCG07G015330' => 'cla', 'COL.COLO4_13698' => 'col', 'COL.COLO4_16659' => 'col', 'COL.COLO4_21986' => 'col', 'COL.COLO4_24049' => 'col', 'COL.COLO4_29061' => 'col', 'COL.COLO4_29075' => 'col', 'COL.COLO4_30094' => 'col', 'Cpa.g.c33689' => 'cpa', 'Cpa.g.sc108.39' => 'cpa', 'Cpa.g.sc108.41' => 'cpa', 'Cpa.g.sc1163.1' => 'cpa', 'Cpa.g.sc4.155' => 'cpa', 'Cpa.g.sc6.194' => 'cpa', 'CsaV3_1G000340' => 'csa', 'CsaV3_1G001400' => 'csa', 'CsaV3_4G002220' => 'csa', 'CsaV3_4G005370' => 'csa', 'CSS0007487' => 'camsi', 'CSS0008066' => 'camsi', 'CSS0009120' => 'camsi', 'CSS0015512' => 'camsi', 'CSS0022409' => 'camsi', 'CSS0025358' => 'camsi', 'CSS0044547' => 'camsi', 'DCAR_013057' => 'dca', 'DCAR_015058' => 'dca', 'DCAR_016027' => 'dca', 'DCAR_017327' => 'dca', 'DCAR_020743' => 'dca', 'DCAR_026157' => 'dca', 'DCAR_032339' => 'dca', 'DCAR_032340' => 'dca', 'Dinv11200' => 'din', 'Dinv11201' => 'din', 'Dinv20631' => 'din', 'Dinv23182' => 'din', 'Dinv33466' => 'din', 'Dinv33583' => 'din', 'Dinv38565' => 'din', 'Duzib068G0200' => 'dzi', 'Duzib147G0132' => 'dzi', 'Duzib147G0635' => 'dzi', 'Duzib205G1670' => 'dzi', 'Duzib251G0606' => 'dzi', 'ECA232G3336' => 'eca', 'ECA232G3763' => 'eca', 'ECA232G4845' => 'eca', 'ECA234G1607' => 'eca', 'ECA246G0932' => 'eca', 'ECA247G0781' => 'eca', 'ECA247G1932' => 'eca', 'ECA247G2079' => 'eca', 'ECA247G3338' => 'eca', 'ECA247G4115' => 'eca', 'EL10Ac3g06552' => 'bvu', 'EL10Ac5g10721' => 'bvu', 'EL10Ac5g10722' => 'bvu', 'EL10Ac5g10723' => 'bvu', 'EL10Ac5g11361' => 'bvu', 'EL10Ac6g13553' => 'bvu', 'EL10As8g23872' => 'bvu', 'Eucgr.B00250' => 'egr', 'Eucgr.B00251' => 'egr', 'Eucgr.B03533' => 'egr', 'Eucgr.I02381' => 'egr', 'Eucgr.K02700' => 'egr', 'FAN02G0174' => 'fan', 'FAN02G3146' => 'fan', 'FAN04G1672' => 'fan', 'FAN04G2273' => 'fan', 'FAN05G2791' => 'fan', 'FAN05G4035' => 'fan', 'FAN07G0834' => 'fan', 'FAN08G1198' => 'fan', 'FAN09G4182' => 'fan', 'FAN12G0496' => 'fan', 'FAN13G1027' => 'fan', 'FAN13G2951' => 'fan', 'FAN14G0705' => 'fan', 'FAN14G0720' => 'fan', 'FAN17G0201' => 'fan', 'FAN17G2665' => 'fan', 'FAN18G1456' => 'fan', 'FAN18G1525' => 'fan', 'FAN18G3500' => 'fan', 'FAN28G2670' => 'fan', 'FvH4_1g12391' => 'fve', 'FvH4_4g23220' => 'fve', 'FvH4_5g08810' => 'fve', 'FvH4_5g28960' => 'fve', 'FvH4_6g42820' => 'fve', 'FvH4_6g51110' => 'fve', 'Glyma.02G051802' => 'gma', 'Glyma.04G185300' => 'gma', 'Glyma.05G202900' => 'gma', 'Glyma.08G010300' => 'gma', 'Glyma.16G131900' => 'gma', 'Glyma.17G087900' => 'gma', 'Gohir.A07G048600' => 'ghi', 'Gohir.A11G179000' => 'ghi', 'Gohir.A12G140900' => 'ghi', 'Gohir.A12G140950' => 'ghi', 'Gohir.A12G191700' => 'ghi', 'Gohir.A13G086300' => 'ghi', 'Gohir.D07G052900' => 'ghi', 'Gohir.D11G186600' => 'ghi', 'Gohir.D12G145575' => 'ghi', 'Gohir.D12G145650' => 'ghi', 'Gohir.D12G145725' => 'ghi', 'Gohir.D12G194050' => 'ghi', 'Gohir.D13G091800' => 'ghi', 'Gorai.001G055900' => 'gra', 'Gorai.007G198400' => 'gra', 'Gorai.008G157000' => 'gra', 'Gorai.008G157100' => 'gra', 'Gorai.008G208700' => 'gra', 'Gorai.010G138700' => 'gra', 'GSVIVG01000977001' => 'vvi', 'GSVIVG01007708001' => 'vvi', 'GSVIVG01008587001' => 'vvi', 'GSVIVG01018849001' => 'vvi', 'GSVIVG01032432001' => 'vvi', 'HanXRQChr02g0034131' => 'han', 'HanXRQChr02g0035981' => 'han', 'HanXRQChr02g0035991' => 'han', 'HanXRQChr05g0155611' => 'han', 'HanXRQChr05g0155621' => 'han', 'HanXRQChr08g0236501' => 'han', 'HanXRQChr09g0261321' => 'han', 'HanXRQChr09g0272081' => 'han', 'HanXRQChr10g0310741' => 'han', 'HanXRQChr11g0325591' => 'han', 'HanXRQChr12g0385691' => 'han', 'HanXRQChr13g0387801' => 'han', 'HanXRQChr15g0463011' => 'han', 'Haze_03826' => 'cav', 'Haze_03827' => 'cav', 'Haze_07183' => 'cav', 'Haze_07537' => 'cav', 'Haze_07539' => 'cav', 'Haze_12461' => 'cav', 'Haze_16115' => 'cav', 'Haze_16808' => 'cav', 'Haze_18531' => 'cav', 'Hma1.2p1_0046F.1_g026700' => 'hma', 'Hma1.2p1_0046F.1_g026710' => 'hma', 'Hma1.2p1_0168F.1_g074340' => 'hma', 'Hma1.2p1_0266F.1_g107030' => 'hma', 'Hma1.2p1_0266F.1_g107060' => 'hma', 'Hma1.2p1_0275F.1_g110510' => 'hma', 'Hma1.2p1_0592F.1_g185490' => 'hma', 'Hma1.2p1_0592F.1_g185500' => 'hma', 'Hma1.2p1_0592F.1_g185510' => 'hma', 'Hma1.2p1_0592F.1_g185520' => 'hma', 'Hma1.2p1_0592F.1_g185530' => 'hma', 'Hma1.2p1_0818F.1_g223450' => 'hma', 'HPP92_009708' => 'vpl', 'HPP92_009793' => 'vpl', 'HPP92_009796' => 'vpl', 'HPP92_009797' => 'vpl', 'HPP92_014940' => 'vpl', 'HPP92_014988' => 'vpl', 'Hund02463' => 'sun', 'Hund02760' => 'sun', 'Hund05071' => 'sun', 'Hund10108' => 'sun', 'Hund11204' => 'sun', 'Hund14016' => 'sun', 'Hund16464' => 'sun', 'Lalb_Chr09g0333391' => 'lal', 'Lalb_Chr11g0070461' => 'lal', 'Lalb_Chr12g0201671' => 'lal', 'Lalb_Chr13g0297161' => 'lal', 'Lj1g0002823' => 'lja', 'Lj3C1074T6' => 'lonja', 'Lj4A212T28' => 'lonja', 'Lj4g0005516' => 'lja', 'Lj4g0013705' => 'lja', 'Lj4g0027865' => 'lja', 'Lj5C92G16' => 'lonja', 'Lj5C92T12' => 'lonja', 'Lj7C596T3' => 'lonja', 'Lj9A446G59' => 'lonja', 'Lj9A482G21' => 'lonja', 'Lsat_1_v5_gn_1_28261' => 'lsa', 'Lsat_1_v5_gn_1_28281' => 'lsa', 'Lsat_1_v5_gn_1_32721' => 'lsa', 'Lsat_1_v5_gn_4_151760' => 'lsa', 'Lsat_1_v5_gn_4_2120' => 'lsa', 'Lsat_1_v5_gn_4_75761' => 'lsa', 'Lsat_1_v5_gn_5_10920' => 'lsa', 'Manes.02G099900' => 'mes', 'Manes.11G096200' => 'mes', 'Manes.12G007200' => 'mes', 'Manes.14G048300' => 'mes', 'Manes.17G114700' => 'mes', 'Mapoly0002s0070' => 'mpo', 'Mapoly0029s0099' => 'mpo', 'MBI07_g24742_MAGBIO' => 'mbi', 'MBI10_g27988_MAGBIO' => 'mbi', 'MBI11_g13057_MAGBIO' => 'mbi', 'MD02G1137200' => 'mdo', 'MD06G1137200' => 'mdo', 'MD07G1122300' => 'mdo', 'MD09G1078200' => 'mdo', 'MD13G1123700' => 'mdo', 'MD14G1151900' => 'mdo', 'MD17G1030900' => 'mdo', 'MD17G1068200' => 'mdo', 'MD17G1068600' => 'mdo', 'Medtr3g077540' => 'mtr', 'Medtr4g105530' => 'mtr', 'Medtr8g076580' => 'mtr', 'Medtr8g076590' => 'mtr', 'Medtr8g096410' => 'mtr', 'MELO3C016411.2' => 'cme', 'MELO3C017780.2' => 'cme', 'MELO3C022560.2' => 'cme', 'MELO3C026187.2' => 'cme', 'MELO3C026286.2' => 'cme', 'MELO3C032854.2' => 'cme', 'Migut.H02495' => 'egut', 'Migut.I00561' => 'egut', 'Migut.K01015' => 'egut', 'Migut.K01016' => 'egut', 'Migut.L00743' => 'egut', 'Migut.L00744' => 'egut', 'Migut.L00746' => 'egut', 'Migut.L00798' => 'egut', 'Migut.L00799' => 'egut', 'Migut.N02096' => 'egut', 'MSTRG.11259' => 'ama', 'MSTRG.23142' => 'ama', 'MSTRG.2499' => 'ama', 'Nitab4.5_0000003g0730' => 'nta', 'Nitab4.5_0000137g0020' => 'nta', 'Nitab4.5_0000721g0210' => 'nta', 'Nitab4.5_0000723g0050' => 'nta', 'Nitab4.5_0000913g0070' => 'nta', 'Nitab4.5_0001332g0040' => 'nta', 'Nitab4.5_0001771g0050' => 'nta', 'Nitab4.5_0001918g0050' => 'nta', 'Nitab4.5_0002686g0030' => 'nta', 'Nitab4.5_0003156g0020' => 'nta', 'Nitab4.5_0003383g0040' => 'nta', 'Nitab4.5_0003918g0010' => 'nta', 'Nitab4.5_0006760g0010' => 'nta', 'Nn1g05981' => 'nnu', 'Nn1g06288' => 'nnu', 'Nn3g16371' => 'nnu', 'Nn3g16786' => 'nnu', 'Nn4g22232' => 'nnu', 'Oeu005144.1' => 'oeu', 'Oeu005145.1' => 'oeu', 'Oeu011348.1' => 'oeu', 'Oeu016415.1' => 'oeu', 'Oeu023501.1' => 'oeu', 'Oeu044473.1' => 'oeu', 'Oeu048892.2' => 'oeu', 'Os01g0549200' => 'osa', 'Os02g0469300' => 'osa', 'Os04g0311100' => 'osa', 'Os06g0474900' => 'osa', 'Os10g0181700' => 'osa', 'Os11g0454800' => 'osa', 'Peaxi162Scf00037g00714' => 'pax', 'Peaxi162Scf00084g01217' => 'pax', 'Peaxi162Scf00257g00217' => 'pax', 'Peaxi162Scf00516g00215' => 'pax', 'Peaxi162Scf00689g00123' => 'pax', 'PGR044G2719' => 'pgr', 'PGR083G1360' => 'pgr', 'PGR102G2849' => 'pgr', 'PGR119G2534' => 'pgr', 'PGSC0003DMG400003538' => 'stu', 'PGSC0003DMG400028138' => 'stu', 'PGSC0003DMG400031732' => 'stu', 'PGSC0003DMG400038165' => 'stu', 'Phvul.002G284600' => 'pvu', 'Phvul.003G258200' => 'pvu', 'Phvul.009G176500' => 'pvu', 'Potri.003G167201' => 'ptr', 'Potri.005G118400' => 'ptr', 'Potri.012G089000' => 'ptr', 'Potri.012G102800' => 'ptr', 'Potri.015G079400' => 'ptr', 'Potri.015G100900' => 'ptr', 'Pp3c14_9810' => 'ppa', 'Pp3c15_10450' => 'ppa', 'Pp3c20_19150' => 'ppa', 'Pp3c23_12740' => 'ppa', 'Pp3c23_6310' => 'ppa', 'Pp3c24_3720' => 'ppa', 'Pp3c27_2580' => 'ppa', 'Pp3c9_8990' => 'ppa', 'PRCOL_00002854' => 'pco', 'Prupe.1G221200' => 'ppe', 'Prupe.3G289000' => 'ppe', 'Prupe.5G147000' => 'ppe', 'Prupe.6G157300' => 'ppe', 'Prupe.7G163400' => 'ppe', 'Psat0s2177g0040' => 'psa', 'Psat3g174760' => 'psa', 'Psat3g192160' => 'psa', 'Psat4g058520' => 'psa', 'Psat4g096840' => 'psa', 'Psat7g037320' => 'psa', 'PSO017G1274' => 'pso', 'PSO017G5166' => 'pso', 'PSO063G4558' => 'pso', 'PSO170G4458' => 'pso', 'PSO170G5005' => 'pso', 'PSO210G6156' => 'pso', 'PSO210G6635' => 'pso', 'PSO210G7397' => 'pso', 'PSO210G7700' => 'pso', 'PSO455G0035' => 'pso', 'PSO455G0180' => 'pso', 'PSO478G4515' => 'pso', 'PSO832G1305' => 'pso', 'PSO832G3489' => 'pso', 'QL02p075247' => 'qlo', 'QL03p051148' => 'qlo', 'QL05p010313' => 'qlo', 'QL06p034627' => 'qlo', 'QL10p001889' => 'qlo', 'QL10p010846' => 'qlo', 'RcHm_v2.0_Chr1g0350621' => 'rch', 'RcHm_v2.0_Chr1g0350641' => 'rch', 'RcHm_v2.0_Chr2g0092891' => 'rch', 'RcHm_v2.0_Chr2g0100251' => 'rch', 'RcHm_v2.0_Chr2g0158661' => 'rch', 'RcHm_v2.0_Chr2g0172741' => 'rch', 'RcHm_v2.0_Chr4g0429571' => 'rch', 'RcHm_v2.0_Chr5g0042471' => 'rch', 'RcHm_v2.0_Chr7g0189451' => 'rch', 'Rhsim08G0052000' => 'rsi', 'Rhsim08G0174400' => 'rsi', 'Rhsim08G0193200' => 'rsi', 'Rhsim10G0214800' => 'rsi', 'Rhsim10G0214900' => 'rsi', 'Rhsim10G0215000' => 'rsi', 'Rhsim12G0022900' => 'rsi', 'Rhsim12G0177500' => 'rsi', 'Rhsim12G0177700' => 'rsi', 'Sabra03G0122600' => 'sbr', 'Sabra05G0097400' => 'sbr', 'Sabra12G0064100' => 'sbr', 'Sabra15G0121300' => 'sbr', 'SalBow2G0642' => 'sbo', 'SalBow5G2667' => 'sbo', 'SalBow5G4873' => 'sbo', 'SalBow8G2395' => 'sbo', 'Sc03g0003290' => 'sci', 'Sc10g0010130' => 'sci', 'Sc22g0003650' => 'sci', 'Sed0001603' => 'sed', 'Sed0004259' => 'sed', 'Sed0006789' => 'sed', 'Sed0011838' => 'sed', 'Sed0012964' => 'sed', 'Sed0016383' => 'sed', 'Sed0019010' => 'sed', 'Sed0020188' => 'sed', 'SEGI_04702' => 'sgi', 'SEGI_17231' => 'sgi', 'SEGI_18877' => 'sgi', 'SEGI_25196' => 'sgi', 'SEGI_25515' => 'sgi', 'SEGI_28445' => 'sgi', 'SEGI_37452' => 'sgi', 'SGA_v2.0_scaffold188G40336' => 'sas', 'SGA_v2.0_scaffold228G43247' => 'sas', 'SGA_v2.0_scaffold280G46853' => 'sas', 'SGA_v2.0_scaffold34G13808' => 'sas', 'SGA_v2.0_scaffold40G15576' => 'sas', 'SGA_v2.0_scaffold611G53188' => 'sas', 'SGA_v2.0_scaffold78G25461' => 'sas', 'SGA_v2.0_scaffold90G27888' => 'sas', 'SHI08601' => 'shi', 'SHI08606' => 'shi', 'SHI17117' => 'shi', 'SHI17119' => 'shi', 'SMO118G0201' => 'smo', 'SMO169G0247' => 'smo', 'SMO176G0006' => 'smo', 'SMO176G0015' => 'smo', 'SMO202G0006' => 'smo', 'SMO240G0050' => 'smo', 'SMO286G0009' => 'smo', 'SMO338G0033' => 'smo', 'SMO356G0533' => 'smo', 'SMO364G0382' => 'smo', 'SMO367G0166' => 'smo', 'SMO367G1098' => 'smo', 'Solyc01g009920.3' => 'sly', 'Solyc01g099300.3' => 'sly', 'Solyc02g084700.3' => 'sly', 'Solyc03g097520.3' => 'sly', 'Solyc06g071580.3' => 'sly', 'Solyc10g081760.3' => 'sly', 'Sopen01g005480' => 'spe', 'Sopen01g042850' => 'spe', 'Sopen02g029370' => 'spe', 'Sopen03g028280' => 'spe', 'Sopen06g027870' => 'spe', 'Sopen10g032270' => 'spe', 'Sp5g18180' => 'spa', 'Sp6g12880' => 'spa', 'Sp6g30850' => 'spa', 'Sp7g22960' => 'spa', 'Sp7g34010' => 'spa', 'SpUn1326_0010' => 'spa', 'TAR371G0242' => 'tar', 'TAR622G0638' => 'tar', 'TAR628G1548' => 'tar', 'TAR629G1079' => 'tar', 'TAR629G3413' => 'tar', 'THA.LOC104804249' => 'tha', 'THA.LOC104808315' => 'tha', 'THA.LOC104809238' => 'tha', 'THA.LOC104825484' => 'tha', 'Thecc.01G025500' => 'tca', 'Thecc.03G015800' => 'tca', 'Thecc.03G018000' => 'tca', 'Thecc.03G134800' => 'tca', 'Thecc.04G014700' => 'tca', 'Thhalv10006991m.g' => 'esa', 'Thhalv10012707m.g' => 'esa', 'Thhalv10015739m.g' => 'esa', 'Thhalv10024553m.g' => 'esa', 'Thhalv10024673m.g' => 'esa', 'Thhalv10029187m.g' => 'esa', 'TPR.G12971' => 'tpr', 'TPR.G29396' => 'tpr', 'TPR.G33376' => 'tpr', 'TPR.G35508' => 'tpr', 'TPR.G35516' => 'tpr', 'TPR.G37317' => 'tpr', 'TPR.G37389' => 'tpr', 'TPR.G37523' => 'tpr', 'TPR.G559' => 'tpr', 'TWI14G0070' => 'twi', 'TWI14G0729' => 'twi', 'TWI18G0596' => 'twi', 'TWI39G0780' => 'twi', 'TWI39G0850' => 'twi', 'TWI73G1052' => 'twi', 'unitig_52.g17485' => 'ugi', 'unitig_61.g26355' => 'ugi', 'vmacro01040' => 'vma', 'vmacro16731' => 'vma', 'vmacro18270' => 'vma', 'vmacro19142' => 'vma', 'vmacro19407' => 'vma', 'vmacro19408' => 'vma', 'vmacro21899' => 'vma', 'vmacro21900' => 'vma', 'vmacro21901' => 'vma', 'VMungo0251G0490' => 'vmu', 'VMungo0251G1748' => 'vmu', 'VMungo1309G0421' => 'vmu', 'Zm00001eb086500' => 'zma', 'Zm00001eb150680' => 'zma', 'Zm00001eb162330' => 'zma', 'Zm00001eb203130' => 'zma', 'Zm00001eb369480' => 'zma', 'Zm00001eb382340' => 'zma', 'Zm00001eb416360' => 'zma' ), 'gf_id' => 'HOM05D000902', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000902' ), 'data_identifier' => 'HOM05D000902', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000902', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '663', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02470' => 'bna', 'A01p16260' => 'bna', 'A02p01680' => 'bna', 'A03p16600' => 'bna', 'A03p55660' => 'bna', 'A03p64160' => 'bna', 'A03p64170' => 'bna', 'A08p31900' => 'bna', 'A09p59530' => 'bna', 'A10p08230' => 'bna', 'A10p25090' => 'bna', 'Aa31LG3G7100' => 'aar', 'Aa31LG3G7110' => 'aar', 'Aa31LG6G13160' => 'aar', 'Aa31LG7G10770' => 'aar', 'Aa31LG7G3830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2723' => 'aag', 'Actinidia08045' => 'ach', 'Actinidia08888' => 'ach', 'Actinidia18333' => 'ach', 'Actinidia19334' => 'ach', 'Actinidia25552' => 'ach', 'Actinidia26089' => 'ach', 'Actinidia30615' => 'ach', 'Actinidia30616' => 'ach', 'Actinidia33083' => 'ach', 'Actinidia35762' => 'ach', 'Ah.02g110620' => 'amhyb', 'Ah.11g046390' => 'amhyb', 'AL1G31670' => 'aly', 'AL6G23730' => 'aly', 'AL7G14740' => 'aly', 'AL7G14750' => 'aly', 'AL7G14760' => 'aly', 'AL7G28220' => 'aly', 'AL8G24940' => 'aly', 'Aqoxy3G01665' => 'aox', 'Aqoxy3G02853' => 'aox', 'Aqoxy5G01513' => 'aox', 'Aqoxy5G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8SKA4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ75LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKDA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0LJZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7REX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZP4YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWX7I5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2QKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS0L9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPCD8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q161UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC7XCF' => 'arhy', 'AT1G19100' => 'ath', 'AT4G24970' => 'ath', 'AT4G36270' => 'ath', 'AT4G36280' => 'ath', 'AT4G36290' => 'ath', 'AT5G13130' => 'ath', 'AT5G50780' => 'ath', 'ATR0582G266' => 'atr', 'ATR0661G195' => 'atr', 'ATR1152G031' => 'atr', 'Atru.chr11.2382' => 'acertr', 'Atru.chr12.2337' => 'acertr', 'Atru.chr3.744' => 'acertr', 'Atru.chr6.1870' => 'acertr', 'Atru.chr9.2515' => 'acertr', 'AUR62004120' => 'cqu', 'AUR62005667' => 'cqu', 'AUR62007634' => 'cqu', 'AUR62008186' => 'cqu', 'AUR62008187' => 'cqu', 'AUR62008188' => 'cqu', 'AUR62027954' => 'cqu', 'AUR62028766' => 'cqu', 'AUR62028767' => 'cqu', 'AUR62028768' => 'cqu', 'AUR62028886' => 'cqu', 'AUR62029563' => 'cqu', 'AUR62038832' => 'cqu', 'BcaB01g04149' => 'bca', 'BcaB03g12940' => 'bca', 'BcaB03g13090' => 'bca', 'BcaB03g14466' => 'bca', 'BcaB05g24035' => 'bca', 'BcaC01g06050' => 'bca', 'BcaC04g19148' => 'bca', 'BcaC04g20761' => 'bca', 'BcaC06g32845' => 'bca', 'BcaC07g41274' => 'bca', 'BcaC09g50827' => 'bca', 'BcaNung00741' => 'bca', 'BcaNung00742' => 'bca', 'BcaNung01859' => 'bca', 'BcaNung03985' => 'bca', 'BcaNung03989' => 'bca', 'BcaNung05661' => 'bca', 'BolC1t00257H' => 'bol', 'BolC1t01956H' => 'bol', 'BolC2t06534H' => 'bol', 'BolC3t14334H' => 'bol', 'BolC5t30451H' => 'bol', 'BolC7t45880H' => 'bol', 'BolC7t46586H' => 'bol', 'BolC8t49301H' => 'bol', 'BolC8t51837H' => 'bol', 'BolC9t56822H' => 'bol', 'BolC9t59235H' => 'bol', 'BraA01t00234Z' => 'bra', 'BraA01t01563Z' => 'bra', 'BraA02t05147Z' => 'bra', 'BraA03t10947Z' => 'bra', 'BraA03t14633Z' => 'bra', 'BraA08t35112Z' => 'bra', 'BraA09t41330Z' => 'bra', 'BraA10t44570Z' => 'bra', 'C01p02670' => 'bna', 'C01p20260' => 'bna', 'C02p05890' => 'bna', 'C03p19530' => 'bna', 'C05p17470' => 'bna', 'C07p53900' => 'bna', 'C07p61630' => 'bna', 'C08p16800' => 'bna', 'C08p42810' => 'bna', 'C09p39480' => 'bna', 'C09p63980' => 'bna', 'CAN.G1001.7' => 'can', 'CAN.G1034.55' => 'can', 'CAN.G143.7' => 'can', 'CAN.G3340.1' => 'can', 'CAN.G358.19' => 'can', 'CAN.G373.2' => 'can', 'CAN.G674.16' => 'can', 'CAN.G674.17' => 'can', 'CAN.G674.18' => 'can', 'CAN.G732.2' => 'can', 'CAN.G732.3' => 'can', 'CAN.G993.39' => 'can', 'CANSAT01G2052' => 'cansat', 'CANSAT80G0070' => 'cansat', 'CANSAT80G0483' => 'cansat', 'CANSAT80G0625' => 'cansat', 'CARHR019690' => 'chi', 'CARHR080280' => 'chi', 'CARHR152750' => 'chi', 'CARHR152760' => 'chi', 'CARHR152770' => 'chi', 'CARHR200340' => 'chi', 'CARHR232370' => 'chi', 'CARHR244670' => 'chi', 'CARHR244680' => 'chi', 'CARHR257520' => 'chi', 'Carub.0001s1872' => 'cru', 'Carub.0006s1130' => 'cru', 'Carub.0007s0396' => 'cru', 'Carub.0007s0397' => 'cru', 'Carub.0007s1608' => 'cru', 'Carub.0008s1068' => 'cru', 'Carub.0008s1077' => 'cru', 'Ca_16158_v3' => 'car', 'Ca_17571_v3' => 'car', 'Ca_21936_v3' => 'car', 'Ca_22350_v3' => 'car', 'CBR_g22445' => 'cbr', 'CBR_g26290' => 'cbr', 'Cc04_g09610' => 'ccan', 'Cc04_g12280' => 'ccan', 'Cc07_g10230' => 'ccan', 'CDE02G0093' => 'cde', 'CDE02G0701' => 'cde', 'CDE04G1050' => 'cde', 'CDE05G1833' => 'cde', 'CDE05G3058' => 'cde', 'CDE05G3380' => 'cde', 'CDE06G0536' => 'cde', 'Cfa006923' => 'cfa', 'Cfa009402' => 'cfa', 'Cfa018751' => 'cfa', 'Cfa019164' => 'cfa', 'Cfa022935' => 'cfa', 'Ciclev10019081m.g' => 'ccl', 'Ciclev10025076m.g' => 'ccl', 'Ciclev10030712m.g' => 'ccl', 'Ciclev10033760m.g' => 'ccl', 'CiPaw.05G105600' => 'cil', 'CiPaw.08G136700' => 'cil', 'CiPaw.11G003900' => 'cil', 'CiPaw.11G023700' => 'cil', 'CiPaw.12G003700' => 'cil', 'ClCG06G017100' => 'cla', 'ClCG06G018110' => 'cla', 'ClCG07G008800' => 'cla', 'ClCG07G015330' => 'cla', 'COL.COLO4_13698' => 'col', 'COL.COLO4_16659' => 'col', 'COL.COLO4_21986' => 'col', 'COL.COLO4_24049' => 'col', 'COL.COLO4_29061' => 'col', 'COL.COLO4_29075' => 'col', 'COL.COLO4_30094' => 'col', 'Cpa.g.c33689' => 'cpa', 'Cpa.g.sc108.39' => 'cpa', 'Cpa.g.sc108.41' => 'cpa', 'Cpa.g.sc1163.1' => 'cpa', 'Cpa.g.sc4.155' => 'cpa', 'Cpa.g.sc6.194' => 'cpa', 'CsaV3_1G000340' => 'csa', 'CsaV3_1G001400' => 'csa', 'CsaV3_4G002220' => 'csa', 'CsaV3_4G005370' => 'csa', 'CSS0007487' => 'camsi', 'CSS0008066' => 'camsi', 'CSS0009120' => 'camsi', 'CSS0015512' => 'camsi', 'CSS0022409' => 'camsi', 'CSS0025358' => 'camsi', 'CSS0044547' => 'camsi', 'DCAR_013057' => 'dca', 'DCAR_015058' => 'dca', 'DCAR_016027' => 'dca', 'DCAR_017327' => 'dca', 'DCAR_020743' => 'dca', 'DCAR_026157' => 'dca', 'DCAR_032339' => 'dca', 'DCAR_032340' => 'dca', 'Dinv11200' => 'din', 'Dinv11201' => 'din', 'Dinv20631' => 'din', 'Dinv23182' => 'din', 'Dinv33466' => 'din', 'Dinv33583' => 'din', 'Dinv38565' => 'din', 'Duzib068G0200' => 'dzi', 'Duzib147G0132' => 'dzi', 'Duzib147G0635' => 'dzi', 'Duzib205G1670' => 'dzi', 'Duzib251G0606' => 'dzi', 'ECA232G3336' => 'eca', 'ECA232G3763' => 'eca', 'ECA232G4845' => 'eca', 'ECA234G1607' => 'eca', 'ECA246G0932' => 'eca', 'ECA247G0781' => 'eca', 'ECA247G1932' => 'eca', 'ECA247G2079' => 'eca', 'ECA247G3338' => 'eca', 'ECA247G4115' => 'eca', 'EL10Ac3g06552' => 'bvu', 'EL10Ac5g10721' => 'bvu', 'EL10Ac5g10722' => 'bvu', 'EL10Ac5g10723' => 'bvu', 'EL10Ac5g11361' => 'bvu', 'EL10Ac6g13553' => 'bvu', 'EL10As8g23872' => 'bvu', 'Eucgr.B00250' => 'egr', 'Eucgr.B00251' => 'egr', 'Eucgr.B03533' => 'egr', 'Eucgr.I02381' => 'egr', 'Eucgr.K02700' => 'egr', 'FAN02G0174' => 'fan', 'FAN02G3146' => 'fan', 'FAN04G1672' => 'fan', 'FAN04G2273' => 'fan', 'FAN05G2791' => 'fan', 'FAN05G4035' => 'fan', 'FAN07G0834' => 'fan', 'FAN08G1198' => 'fan', 'FAN09G4182' => 'fan', 'FAN12G0496' => 'fan', 'FAN13G1027' => 'fan', 'FAN13G2951' => 'fan', 'FAN14G0705' => 'fan', 'FAN14G0720' => 'fan', 'FAN17G0201' => 'fan', 'FAN17G2665' => 'fan', 'FAN18G1456' => 'fan', 'FAN18G1525' => 'fan', 'FAN18G3500' => 'fan', 'FAN28G2670' => 'fan', 'FvH4_1g12391' => 'fve', 'FvH4_4g23220' => 'fve', 'FvH4_5g08810' => 'fve', 'FvH4_5g28960' => 'fve', 'FvH4_6g42820' => 'fve', 'FvH4_6g51110' => 'fve', 'Glyma.02G051802' => 'gma', 'Glyma.04G185300' => 'gma', 'Glyma.05G202900' => 'gma', 'Glyma.08G010300' => 'gma', 'Glyma.16G131900' => 'gma', 'Glyma.17G087900' => 'gma', 'Gohir.A07G048600' => 'ghi', 'Gohir.A11G179000' => 'ghi', 'Gohir.A12G140900' => 'ghi', 'Gohir.A12G140950' => 'ghi', 'Gohir.A12G191700' => 'ghi', 'Gohir.A13G086300' => 'ghi', 'Gohir.D07G052900' => 'ghi', 'Gohir.D11G186600' => 'ghi', 'Gohir.D12G145575' => 'ghi', 'Gohir.D12G145650' => 'ghi', 'Gohir.D12G145725' => 'ghi', 'Gohir.D12G194050' => 'ghi', 'Gohir.D13G091800' => 'ghi', 'Gorai.001G055900' => 'gra', 'Gorai.007G198400' => 'gra', 'Gorai.008G157000' => 'gra', 'Gorai.008G157100' => 'gra', 'Gorai.008G208700' => 'gra', 'Gorai.010G138700' => 'gra', 'GSVIVG01000977001' => 'vvi', 'GSVIVG01007708001' => 'vvi', 'GSVIVG01008587001' => 'vvi', 'GSVIVG01018849001' => 'vvi', 'GSVIVG01032432001' => 'vvi', 'HanXRQChr02g0034131' => 'han', 'HanXRQChr02g0035981' => 'han', 'HanXRQChr02g0035991' => 'han', 'HanXRQChr05g0155611' => 'han', 'HanXRQChr05g0155621' => 'han', 'HanXRQChr08g0236501' => 'han', 'HanXRQChr09g0261321' => 'han', 'HanXRQChr09g0272081' => 'han', 'HanXRQChr10g0310741' => 'han', 'HanXRQChr11g0325591' => 'han', 'HanXRQChr12g0385691' => 'han', 'HanXRQChr13g0387801' => 'han', 'HanXRQChr15g0463011' => 'han', 'Haze_03826' => 'cav', 'Haze_03827' => 'cav', 'Haze_07183' => 'cav', 'Haze_07537' => 'cav', 'Haze_07539' => 'cav', 'Haze_12461' => 'cav', 'Haze_16115' => 'cav', 'Haze_16808' => 'cav', 'Haze_18531' => 'cav', 'Hma1.2p1_0046F.1_g026700' => 'hma', 'Hma1.2p1_0046F.1_g026710' => 'hma', 'Hma1.2p1_0168F.1_g074340' => 'hma', 'Hma1.2p1_0266F.1_g107030' => 'hma', 'Hma1.2p1_0266F.1_g107060' => 'hma', 'Hma1.2p1_0275F.1_g110510' => 'hma', 'Hma1.2p1_0592F.1_g185490' => 'hma', 'Hma1.2p1_0592F.1_g185500' => 'hma', 'Hma1.2p1_0592F.1_g185510' => 'hma', 'Hma1.2p1_0592F.1_g185520' => 'hma', 'Hma1.2p1_0592F.1_g185530' => 'hma', 'Hma1.2p1_0818F.1_g223450' => 'hma', 'HPP92_009708' => 'vpl', 'HPP92_009793' => 'vpl', 'HPP92_009796' => 'vpl', 'HPP92_009797' => 'vpl', 'HPP92_014940' => 'vpl', 'HPP92_014988' => 'vpl', 'Hund02463' => 'sun', 'Hund02760' => 'sun', 'Hund05071' => 'sun', 'Hund10108' => 'sun', 'Hund11204' => 'sun', 'Hund14016' => 'sun', 'Hund16464' => 'sun', 'Lalb_Chr09g0333391' => 'lal', 'Lalb_Chr11g0070461' => 'lal', 'Lalb_Chr12g0201671' => 'lal', 'Lalb_Chr13g0297161' => 'lal', 'Lj1g0002823' => 'lja', 'Lj3C1074T6' => 'lonja', 'Lj4A212T28' => 'lonja', 'Lj4g0005516' => 'lja', 'Lj4g0013705' => 'lja', 'Lj4g0027865' => 'lja', 'Lj5C92G16' => 'lonja', 'Lj5C92T12' => 'lonja', 'Lj7C596T3' => 'lonja', 'Lj9A446G59' => 'lonja', 'Lj9A482G21' => 'lonja', 'Lsat_1_v5_gn_1_28261' => 'lsa', 'Lsat_1_v5_gn_1_28281' => 'lsa', 'Lsat_1_v5_gn_1_32721' => 'lsa', 'Lsat_1_v5_gn_4_151760' => 'lsa', 'Lsat_1_v5_gn_4_2120' => 'lsa', 'Lsat_1_v5_gn_4_75761' => 'lsa', 'Lsat_1_v5_gn_5_10920' => 'lsa', 'Manes.02G099900' => 'mes', 'Manes.11G096200' => 'mes', 'Manes.12G007200' => 'mes', 'Manes.14G048300' => 'mes', 'Manes.17G114700' => 'mes', 'Mapoly0002s0070' => 'mpo', 'Mapoly0029s0099' => 'mpo', 'MBI07_g24742_MAGBIO' => 'mbi', 'MBI10_g27988_MAGBIO' => 'mbi', 'MBI11_g13057_MAGBIO' => 'mbi', 'MD02G1137200' => 'mdo', 'MD06G1137200' => 'mdo', 'MD07G1122300' => 'mdo', 'MD09G1078200' => 'mdo', 'MD13G1123700' => 'mdo', 'MD14G1151900' => 'mdo', 'MD17G1030900' => 'mdo', 'MD17G1068200' => 'mdo', 'MD17G1068600' => 'mdo', 'Medtr3g077540' => 'mtr', 'Medtr4g105530' => 'mtr', 'Medtr8g076580' => 'mtr', 'Medtr8g076590' => 'mtr', 'Medtr8g096410' => 'mtr', 'MELO3C016411.2' => 'cme', 'MELO3C017780.2' => 'cme', 'MELO3C022560.2' => 'cme', 'MELO3C026187.2' => 'cme', 'MELO3C026286.2' => 'cme', 'MELO3C032854.2' => 'cme', 'Migut.H02495' => 'egut', 'Migut.I00561' => 'egut', 'Migut.K01015' => 'egut', 'Migut.K01016' => 'egut', 'Migut.L00743' => 'egut', 'Migut.L00744' => 'egut', 'Migut.L00746' => 'egut', 'Migut.L00798' => 'egut', 'Migut.L00799' => 'egut', 'Migut.N02096' => 'egut', 'MSTRG.11259' => 'ama', 'MSTRG.23142' => 'ama', 'MSTRG.2499' => 'ama', 'Nitab4.5_0000003g0730' => 'nta', 'Nitab4.5_0000137g0020' => 'nta', 'Nitab4.5_0000721g0210' => 'nta', 'Nitab4.5_0000723g0050' => 'nta', 'Nitab4.5_0000913g0070' => 'nta', 'Nitab4.5_0001332g0040' => 'nta', 'Nitab4.5_0001771g0050' => 'nta', 'Nitab4.5_0001918g0050' => 'nta', 'Nitab4.5_0002686g0030' => 'nta', 'Nitab4.5_0003156g0020' => 'nta', 'Nitab4.5_0003383g0040' => 'nta', 'Nitab4.5_0003918g0010' => 'nta', 'Nitab4.5_0006760g0010' => 'nta', 'Nn1g05981' => 'nnu', 'Nn1g06288' => 'nnu', 'Nn3g16371' => 'nnu', 'Nn3g16786' => 'nnu', 'Nn4g22232' => 'nnu', 'Oeu005144.1' => 'oeu', 'Oeu005145.1' => 'oeu', 'Oeu011348.1' => 'oeu', 'Oeu016415.1' => 'oeu', 'Oeu023501.1' => 'oeu', 'Oeu044473.1' => 'oeu', 'Oeu048892.2' => 'oeu', 'Os01g0549200' => 'osa', 'Os02g0469300' => 'osa', 'Os04g0311100' => 'osa', 'Os06g0474900' => 'osa', 'Os10g0181700' => 'osa', 'Os11g0454800' => 'osa', 'Peaxi162Scf00037g00714' => 'pax', 'Peaxi162Scf00084g01217' => 'pax', 'Peaxi162Scf00257g00217' => 'pax', 'Peaxi162Scf00516g00215' => 'pax', 'Peaxi162Scf00689g00123' => 'pax', 'PGR044G2719' => 'pgr', 'PGR083G1360' => 'pgr', 'PGR102G2849' => 'pgr', 'PGR119G2534' => 'pgr', 'PGSC0003DMG400003538' => 'stu', 'PGSC0003DMG400028138' => 'stu', 'PGSC0003DMG400031732' => 'stu', 'PGSC0003DMG400038165' => 'stu', 'Phvul.002G284600' => 'pvu', 'Phvul.003G258200' => 'pvu', 'Phvul.009G176500' => 'pvu', 'Potri.003G167201' => 'ptr', 'Potri.005G118400' => 'ptr', 'Potri.012G089000' => 'ptr', 'Potri.012G102800' => 'ptr', 'Potri.015G079400' => 'ptr', 'Potri.015G100900' => 'ptr', 'Pp3c14_9810' => 'ppa', 'Pp3c15_10450' => 'ppa', 'Pp3c20_19150' => 'ppa', 'Pp3c23_12740' => 'ppa', 'Pp3c23_6310' => 'ppa', 'Pp3c24_3720' => 'ppa', 'Pp3c27_2580' => 'ppa', 'Pp3c9_8990' => 'ppa', 'PRCOL_00002854' => 'pco', 'Prupe.1G221200' => 'ppe', 'Prupe.3G289000' => 'ppe', 'Prupe.5G147000' => 'ppe', 'Prupe.6G157300' => 'ppe', 'Prupe.7G163400' => 'ppe', 'Psat0s2177g0040' => 'psa', 'Psat3g174760' => 'psa', 'Psat3g192160' => 'psa', 'Psat4g058520' => 'psa', 'Psat4g096840' => 'psa', 'Psat7g037320' => 'psa', 'PSO017G1274' => 'pso', 'PSO017G5166' => 'pso', 'PSO063G4558' => 'pso', 'PSO170G4458' => 'pso', 'PSO170G5005' => 'pso', 'PSO210G6156' => 'pso', 'PSO210G6635' => 'pso', 'PSO210G7397' => 'pso', 'PSO210G7700' => 'pso', 'PSO455G0035' => 'pso', 'PSO455G0180' => 'pso', 'PSO478G4515' => 'pso', 'PSO832G1305' => 'pso', 'PSO832G3489' => 'pso', 'QL02p075247' => 'qlo', 'QL03p051148' => 'qlo', 'QL05p010313' => 'qlo', 'QL06p034627' => 'qlo', 'QL10p001889' => 'qlo', 'QL10p010846' => 'qlo', 'RcHm_v2.0_Chr1g0350621' => 'rch', 'RcHm_v2.0_Chr1g0350641' => 'rch', 'RcHm_v2.0_Chr2g0092891' => 'rch', 'RcHm_v2.0_Chr2g0100251' => 'rch', 'RcHm_v2.0_Chr2g0158661' => 'rch', 'RcHm_v2.0_Chr2g0172741' => 'rch', 'RcHm_v2.0_Chr4g0429571' => 'rch', 'RcHm_v2.0_Chr5g0042471' => 'rch', 'RcHm_v2.0_Chr7g0189451' => 'rch', 'Rhsim08G0052000' => 'rsi', 'Rhsim08G0174400' => 'rsi', 'Rhsim08G0193200' => 'rsi', 'Rhsim10G0214800' => 'rsi', 'Rhsim10G0214900' => 'rsi', 'Rhsim10G0215000' => 'rsi', 'Rhsim12G0022900' => 'rsi', 'Rhsim12G0177500' => 'rsi', 'Rhsim12G0177700' => 'rsi', 'Sabra03G0122600' => 'sbr', 'Sabra05G0097400' => 'sbr', 'Sabra12G0064100' => 'sbr', 'Sabra15G0121300' => 'sbr', 'SalBow2G0642' => 'sbo', 'SalBow5G2667' => 'sbo', 'SalBow5G4873' => 'sbo', 'SalBow8G2395' => 'sbo', 'Sc03g0003290' => 'sci', 'Sc10g0010130' => 'sci', 'Sc22g0003650' => 'sci', 'Sed0001603' => 'sed', 'Sed0004259' => 'sed', 'Sed0006789' => 'sed', 'Sed0011838' => 'sed', 'Sed0012964' => 'sed', 'Sed0016383' => 'sed', 'Sed0019010' => 'sed', 'Sed0020188' => 'sed', 'SEGI_04702' => 'sgi', 'SEGI_17231' => 'sgi', 'SEGI_18877' => 'sgi', 'SEGI_25196' => 'sgi', 'SEGI_25515' => 'sgi', 'SEGI_28445' => 'sgi', 'SEGI_37452' => 'sgi', 'SGA_v2.0_scaffold188G40336' => 'sas', 'SGA_v2.0_scaffold228G43247' => 'sas', 'SGA_v2.0_scaffold280G46853' => 'sas', 'SGA_v2.0_scaffold34G13808' => 'sas', 'SGA_v2.0_scaffold40G15576' => 'sas', 'SGA_v2.0_scaffold611G53188' => 'sas', 'SGA_v2.0_scaffold78G25461' => 'sas', 'SGA_v2.0_scaffold90G27888' => 'sas', 'SHI08601' => 'shi', 'SHI08606' => 'shi', 'SHI17117' => 'shi', 'SHI17119' => 'shi', 'SMO118G0201' => 'smo', 'SMO169G0247' => 'smo', 'SMO176G0006' => 'smo', 'SMO176G0015' => 'smo', 'SMO202G0006' => 'smo', 'SMO240G0050' => 'smo', 'SMO286G0009' => 'smo', 'SMO338G0033' => 'smo', 'SMO356G0533' => 'smo', 'SMO364G0382' => 'smo', 'SMO367G0166' => 'smo', 'SMO367G1098' => 'smo', 'Solyc01g009920.3' => 'sly', 'Solyc01g099300.3' => 'sly', 'Solyc02g084700.3' => 'sly', 'Solyc03g097520.3' => 'sly', 'Solyc06g071580.3' => 'sly', 'Solyc10g081760.3' => 'sly', 'Sopen01g005480' => 'spe', 'Sopen01g042850' => 'spe', 'Sopen02g029370' => 'spe', 'Sopen03g028280' => 'spe', 'Sopen06g027870' => 'spe', 'Sopen10g032270' => 'spe', 'Sp5g18180' => 'spa', 'Sp6g12880' => 'spa', 'Sp6g30850' => 'spa', 'Sp7g22960' => 'spa', 'Sp7g34010' => 'spa', 'SpUn1326_0010' => 'spa', 'TAR371G0242' => 'tar', 'TAR622G0638' => 'tar', 'TAR628G1548' => 'tar', 'TAR629G1079' => 'tar', 'TAR629G3413' => 'tar', 'THA.LOC104804249' => 'tha', 'THA.LOC104808315' => 'tha', 'THA.LOC104809238' => 'tha', 'THA.LOC104825484' => 'tha', 'Thecc.01G025500' => 'tca', 'Thecc.03G015800' => 'tca', 'Thecc.03G018000' => 'tca', 'Thecc.03G134800' => 'tca', 'Thecc.04G014700' => 'tca', 'Thhalv10006991m.g' => 'esa', 'Thhalv10012707m.g' => 'esa', 'Thhalv10015739m.g' => 'esa', 'Thhalv10024553m.g' => 'esa', 'Thhalv10024673m.g' => 'esa', 'Thhalv10029187m.g' => 'esa', 'TPR.G12971' => 'tpr', 'TPR.G29396' => 'tpr', 'TPR.G33376' => 'tpr', 'TPR.G35508' => 'tpr', 'TPR.G35516' => 'tpr', 'TPR.G37317' => 'tpr', 'TPR.G37389' => 'tpr', 'TPR.G37523' => 'tpr', 'TPR.G559' => 'tpr', 'TWI14G0070' => 'twi', 'TWI14G0729' => 'twi', 'TWI18G0596' => 'twi', 'TWI39G0780' => 'twi', 'TWI39G0850' => 'twi', 'TWI73G1052' => 'twi', 'unitig_52.g17485' => 'ugi', 'unitig_61.g26355' => 'ugi', 'vmacro01040' => 'vma', 'vmacro16731' => 'vma', 'vmacro18270' => 'vma', 'vmacro19142' => 'vma', 'vmacro19407' => 'vma', 'vmacro19408' => 'vma', 'vmacro21899' => 'vma', 'vmacro21900' => 'vma', 'vmacro21901' => 'vma', 'VMungo0251G0490' => 'vmu', 'VMungo0251G1748' => 'vmu', 'VMungo1309G0421' => 'vmu', 'Zm00001eb086500' => 'zma', 'Zm00001eb150680' => 'zma', 'Zm00001eb162330' => 'zma', 'Zm00001eb203130' => 'zma', 'Zm00001eb369480' => 'zma', 'Zm00001eb382340' => 'zma', 'Zm00001eb416360' => 'zma' ) $gf_id = 'HOM05D000902' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000902' ) $data_identifier = 'HOM05D000902' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 13, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 10, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 6, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 9, 'hma' => (int) 12, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 4, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 6, 'ppa' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 6, 'rch' => (int) 9, 'rsi' => (int) 9, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 12, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 3, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416360' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000902', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '663', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02470' => 'bna', 'A01p16260' => 'bna', 'A02p01680' => 'bna', 'A03p16600' => 'bna', 'A03p55660' => 'bna', 'A03p64160' => 'bna', 'A03p64170' => 'bna', 'A08p31900' => 'bna', 'A09p59530' => 'bna', 'A10p08230' => 'bna', 'A10p25090' => 'bna', 'Aa31LG3G7100' => 'aar', 'Aa31LG3G7110' => 'aar', 'Aa31LG6G13160' => 'aar', 'Aa31LG7G10770' => 'aar', 'Aa31LG7G3830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2723' => 'aag', 'Actinidia08045' => 'ach', 'Actinidia08888' => 'ach', 'Actinidia18333' => 'ach', 'Actinidia19334' => 'ach', 'Actinidia25552' => 'ach', 'Actinidia26089' => 'ach', 'Actinidia30615' => 'ach', 'Actinidia30616' => 'ach', 'Actinidia33083' => 'ach', 'Actinidia35762' => 'ach', 'Ah.02g110620' => 'amhyb', 'Ah.11g046390' => 'amhyb', 'AL1G31670' => 'aly', 'AL6G23730' => 'aly', 'AL7G14740' => 'aly', 'AL7G14750' => 'aly', 'AL7G14760' => 'aly', 'AL7G28220' => 'aly', 'AL8G24940' => 'aly', 'Aqoxy3G01665' => 'aox', 'Aqoxy3G02853' => 'aox', 'Aqoxy5G01513' => 'aox', 'Aqoxy5G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8SKA4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ75LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKDA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0LJZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7REX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZP4YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWX7I5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2QKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS0L9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPCD8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q161UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC7XCF' => 'arhy', 'AT1G19100' => 'ath', 'AT4G24970' => 'ath', 'AT4G36270' => 'ath', 'AT4G36280' => 'ath', 'AT4G36290' => 'ath', 'AT5G13130' => 'ath', 'AT5G50780' => 'ath', 'ATR0582G266' => 'atr', 'ATR0661G195' => 'atr', 'ATR1152G031' => 'atr', 'Atru.chr11.2382' => 'acertr', 'Atru.chr12.2337' => 'acertr', 'Atru.chr3.744' => 'acertr', 'Atru.chr6.1870' => 'acertr', 'Atru.chr9.2515' => 'acertr', 'AUR62004120' => 'cqu', 'AUR62005667' => 'cqu', 'AUR62007634' => 'cqu', 'AUR62008186' => 'cqu', 'AUR62008187' => 'cqu', 'AUR62008188' => 'cqu', 'AUR62027954' => 'cqu', 'AUR62028766' => 'cqu', 'AUR62028767' => 'cqu', 'AUR62028768' => 'cqu', 'AUR62028886' => 'cqu', 'AUR62029563' => 'cqu', 'AUR62038832' => 'cqu', 'BcaB01g04149' => 'bca', 'BcaB03g12940' => 'bca', 'BcaB03g13090' => 'bca', 'BcaB03g14466' => 'bca', 'BcaB05g24035' => 'bca', 'BcaC01g06050' => 'bca', 'BcaC04g19148' => 'bca', 'BcaC04g20761' => 'bca', 'BcaC06g32845' => 'bca', 'BcaC07g41274' => 'bca', 'BcaC09g50827' => 'bca', 'BcaNung00741' => 'bca', 'BcaNung00742' => 'bca', 'BcaNung01859' => 'bca', 'BcaNung03985' => 'bca', 'BcaNung03989' => 'bca', 'BcaNung05661' => 'bca', 'BolC1t00257H' => 'bol', 'BolC1t01956H' => 'bol', 'BolC2t06534H' => 'bol', 'BolC3t14334H' => 'bol', 'BolC5t30451H' => 'bol', 'BolC7t45880H' => 'bol', 'BolC7t46586H' => 'bol', 'BolC8t49301H' => 'bol', 'BolC8t51837H' => 'bol', 'BolC9t56822H' => 'bol', 'BolC9t59235H' => 'bol', 'BraA01t00234Z' => 'bra', 'BraA01t01563Z' => 'bra', 'BraA02t05147Z' => 'bra', 'BraA03t10947Z' => 'bra', 'BraA03t14633Z' => 'bra', 'BraA08t35112Z' => 'bra', 'BraA09t41330Z' => 'bra', 'BraA10t44570Z' => 'bra', 'C01p02670' => 'bna', 'C01p20260' => 'bna', 'C02p05890' => 'bna', 'C03p19530' => 'bna', 'C05p17470' => 'bna', 'C07p53900' => 'bna', 'C07p61630' => 'bna', 'C08p16800' => 'bna', 'C08p42810' => 'bna', 'C09p39480' => 'bna', 'C09p63980' => 'bna', 'CAN.G1001.7' => 'can', 'CAN.G1034.55' => 'can', 'CAN.G143.7' => 'can', 'CAN.G3340.1' => 'can', 'CAN.G358.19' => 'can', 'CAN.G373.2' => 'can', 'CAN.G674.16' => 'can', 'CAN.G674.17' => 'can', 'CAN.G674.18' => 'can', 'CAN.G732.2' => 'can', 'CAN.G732.3' => 'can', 'CAN.G993.39' => 'can', 'CANSAT01G2052' => 'cansat', 'CANSAT80G0070' => 'cansat', 'CANSAT80G0483' => 'cansat', 'CANSAT80G0625' => 'cansat', 'CARHR019690' => 'chi', 'CARHR080280' => 'chi', 'CARHR152750' => 'chi', 'CARHR152760' => 'chi', 'CARHR152770' => 'chi', 'CARHR200340' => 'chi', 'CARHR232370' => 'chi', 'CARHR244670' => 'chi', 'CARHR244680' => 'chi', 'CARHR257520' => 'chi', 'Carub.0001s1872' => 'cru', 'Carub.0006s1130' => 'cru', 'Carub.0007s0396' => 'cru', 'Carub.0007s0397' => 'cru', 'Carub.0007s1608' => 'cru', 'Carub.0008s1068' => 'cru', 'Carub.0008s1077' => 'cru', 'Ca_16158_v3' => 'car', 'Ca_17571_v3' => 'car', 'Ca_21936_v3' => 'car', 'Ca_22350_v3' => 'car', 'CBR_g22445' => 'cbr', 'CBR_g26290' => 'cbr', 'Cc04_g09610' => 'ccan', 'Cc04_g12280' => 'ccan', 'Cc07_g10230' => 'ccan', 'CDE02G0093' => 'cde', 'CDE02G0701' => 'cde', 'CDE04G1050' => 'cde', 'CDE05G1833' => 'cde', 'CDE05G3058' => 'cde', 'CDE05G3380' => 'cde', 'CDE06G0536' => 'cde', 'Cfa006923' => 'cfa', 'Cfa009402' => 'cfa', 'Cfa018751' => 'cfa', 'Cfa019164' => 'cfa', 'Cfa022935' => 'cfa', 'Ciclev10019081m.g' => 'ccl', 'Ciclev10025076m.g' => 'ccl', 'Ciclev10030712m.g' => 'ccl', 'Ciclev10033760m.g' => 'ccl', 'CiPaw.05G105600' => 'cil', 'CiPaw.08G136700' => 'cil', 'CiPaw.11G003900' => 'cil', 'CiPaw.11G023700' => 'cil', 'CiPaw.12G003700' => 'cil', 'ClCG06G017100' => 'cla', 'ClCG06G018110' => 'cla', 'ClCG07G008800' => 'cla', 'ClCG07G015330' => 'cla', 'COL.COLO4_13698' => 'col', 'COL.COLO4_16659' => 'col', 'COL.COLO4_21986' => 'col', 'COL.COLO4_24049' => 'col', 'COL.COLO4_29061' => 'col', 'COL.COLO4_29075' => 'col', 'COL.COLO4_30094' => 'col', 'Cpa.g.c33689' => 'cpa', 'Cpa.g.sc108.39' => 'cpa', 'Cpa.g.sc108.41' => 'cpa', 'Cpa.g.sc1163.1' => 'cpa', 'Cpa.g.sc4.155' => 'cpa', 'Cpa.g.sc6.194' => 'cpa', 'CsaV3_1G000340' => 'csa', 'CsaV3_1G001400' => 'csa', 'CsaV3_4G002220' => 'csa', 'CsaV3_4G005370' => 'csa', 'CSS0007487' => 'camsi', 'CSS0008066' => 'camsi', 'CSS0009120' => 'camsi', 'CSS0015512' => 'camsi', 'CSS0022409' => 'camsi', 'CSS0025358' => 'camsi', 'CSS0044547' => 'camsi', 'DCAR_013057' => 'dca', 'DCAR_015058' => 'dca', 'DCAR_016027' => 'dca', 'DCAR_017327' => 'dca', 'DCAR_020743' => 'dca', 'DCAR_026157' => 'dca', 'DCAR_032339' => 'dca', 'DCAR_032340' => 'dca', 'Dinv11200' => 'din', 'Dinv11201' => 'din', 'Dinv20631' => 'din', 'Dinv23182' => 'din', 'Dinv33466' => 'din', 'Dinv33583' => 'din', 'Dinv38565' => 'din', 'Duzib068G0200' => 'dzi', 'Duzib147G0132' => 'dzi', 'Duzib147G0635' => 'dzi', 'Duzib205G1670' => 'dzi', 'Duzib251G0606' => 'dzi', 'ECA232G3336' => 'eca', 'ECA232G3763' => 'eca', 'ECA232G4845' => 'eca', 'ECA234G1607' => 'eca', 'ECA246G0932' => 'eca', 'ECA247G0781' => 'eca', 'ECA247G1932' => 'eca', 'ECA247G2079' => 'eca', 'ECA247G3338' => 'eca', 'ECA247G4115' => 'eca', 'EL10Ac3g06552' => 'bvu', 'EL10Ac5g10721' => 'bvu', 'EL10Ac5g10722' => 'bvu', 'EL10Ac5g10723' => 'bvu', 'EL10Ac5g11361' => 'bvu', 'EL10Ac6g13553' => 'bvu', 'EL10As8g23872' => 'bvu', 'Eucgr.B00250' => 'egr', 'Eucgr.B00251' => 'egr', 'Eucgr.B03533' => 'egr', 'Eucgr.I02381' => 'egr', 'Eucgr.K02700' => 'egr', 'FAN02G0174' => 'fan', 'FAN02G3146' => 'fan', 'FAN04G1672' => 'fan', 'FAN04G2273' => 'fan', 'FAN05G2791' => 'fan', 'FAN05G4035' => 'fan', 'FAN07G0834' => 'fan', 'FAN08G1198' => 'fan', 'FAN09G4182' => 'fan', 'FAN12G0496' => 'fan', 'FAN13G1027' => 'fan', 'FAN13G2951' => 'fan', 'FAN14G0705' => 'fan', 'FAN14G0720' => 'fan', 'FAN17G0201' => 'fan', 'FAN17G2665' => 'fan', 'FAN18G1456' => 'fan', 'FAN18G1525' => 'fan', 'FAN18G3500' => 'fan', 'FAN28G2670' => 'fan', 'FvH4_1g12391' => 'fve', 'FvH4_4g23220' => 'fve', 'FvH4_5g08810' => 'fve', 'FvH4_5g28960' => 'fve', 'FvH4_6g42820' => 'fve', 'FvH4_6g51110' => 'fve', 'Glyma.02G051802' => 'gma', 'Glyma.04G185300' => 'gma', 'Glyma.05G202900' => 'gma', 'Glyma.08G010300' => 'gma', 'Glyma.16G131900' => 'gma', 'Glyma.17G087900' => 'gma', 'Gohir.A07G048600' => 'ghi', 'Gohir.A11G179000' => 'ghi', 'Gohir.A12G140900' => 'ghi', 'Gohir.A12G140950' => 'ghi', 'Gohir.A12G191700' => 'ghi', 'Gohir.A13G086300' => 'ghi', 'Gohir.D07G052900' => 'ghi', 'Gohir.D11G186600' => 'ghi', 'Gohir.D12G145575' => 'ghi', 'Gohir.D12G145650' => 'ghi', 'Gohir.D12G145725' => 'ghi', 'Gohir.D12G194050' => 'ghi', 'Gohir.D13G091800' => 'ghi', 'Gorai.001G055900' => 'gra', 'Gorai.007G198400' => 'gra', 'Gorai.008G157000' => 'gra', 'Gorai.008G157100' => 'gra', 'Gorai.008G208700' => 'gra', 'Gorai.010G138700' => 'gra', 'GSVIVG01000977001' => 'vvi', 'GSVIVG01007708001' => 'vvi', 'GSVIVG01008587001' => 'vvi', 'GSVIVG01018849001' => 'vvi', 'GSVIVG01032432001' => 'vvi', 'HanXRQChr02g0034131' => 'han', 'HanXRQChr02g0035981' => 'han', 'HanXRQChr02g0035991' => 'han', 'HanXRQChr05g0155611' => 'han', 'HanXRQChr05g0155621' => 'han', 'HanXRQChr08g0236501' => 'han', 'HanXRQChr09g0261321' => 'han', 'HanXRQChr09g0272081' => 'han', 'HanXRQChr10g0310741' => 'han', 'HanXRQChr11g0325591' => 'han', 'HanXRQChr12g0385691' => 'han', 'HanXRQChr13g0387801' => 'han', 'HanXRQChr15g0463011' => 'han', 'Haze_03826' => 'cav', 'Haze_03827' => 'cav', 'Haze_07183' => 'cav', 'Haze_07537' => 'cav', 'Haze_07539' => 'cav', 'Haze_12461' => 'cav', 'Haze_16115' => 'cav', 'Haze_16808' => 'cav', 'Haze_18531' => 'cav', 'Hma1.2p1_0046F.1_g026700' => 'hma', 'Hma1.2p1_0046F.1_g026710' => 'hma', 'Hma1.2p1_0168F.1_g074340' => 'hma', 'Hma1.2p1_0266F.1_g107030' => 'hma', 'Hma1.2p1_0266F.1_g107060' => 'hma', 'Hma1.2p1_0275F.1_g110510' => 'hma', 'Hma1.2p1_0592F.1_g185490' => 'hma', 'Hma1.2p1_0592F.1_g185500' => 'hma', 'Hma1.2p1_0592F.1_g185510' => 'hma', 'Hma1.2p1_0592F.1_g185520' => 'hma', 'Hma1.2p1_0592F.1_g185530' => 'hma', 'Hma1.2p1_0818F.1_g223450' => 'hma', 'HPP92_009708' => 'vpl', 'HPP92_009793' => 'vpl', 'HPP92_009796' => 'vpl', 'HPP92_009797' => 'vpl', 'HPP92_014940' => 'vpl', 'HPP92_014988' => 'vpl', 'Hund02463' => 'sun', 'Hund02760' => 'sun', 'Hund05071' => 'sun', 'Hund10108' => 'sun', 'Hund11204' => 'sun', 'Hund14016' => 'sun', 'Hund16464' => 'sun', 'Lalb_Chr09g0333391' => 'lal', 'Lalb_Chr11g0070461' => 'lal', 'Lalb_Chr12g0201671' => 'lal', 'Lalb_Chr13g0297161' => 'lal', 'Lj1g0002823' => 'lja', 'Lj3C1074T6' => 'lonja', 'Lj4A212T28' => 'lonja', 'Lj4g0005516' => 'lja', 'Lj4g0013705' => 'lja', 'Lj4g0027865' => 'lja', 'Lj5C92G16' => 'lonja', 'Lj5C92T12' => 'lonja', 'Lj7C596T3' => 'lonja', 'Lj9A446G59' => 'lonja', 'Lj9A482G21' => 'lonja', 'Lsat_1_v5_gn_1_28261' => 'lsa', 'Lsat_1_v5_gn_1_28281' => 'lsa', 'Lsat_1_v5_gn_1_32721' => 'lsa', 'Lsat_1_v5_gn_4_151760' => 'lsa', 'Lsat_1_v5_gn_4_2120' => 'lsa', 'Lsat_1_v5_gn_4_75761' => 'lsa', 'Lsat_1_v5_gn_5_10920' => 'lsa', 'Manes.02G099900' => 'mes', 'Manes.11G096200' => 'mes', 'Manes.12G007200' => 'mes', 'Manes.14G048300' => 'mes', 'Manes.17G114700' => 'mes', 'Mapoly0002s0070' => 'mpo', 'Mapoly0029s0099' => 'mpo', 'MBI07_g24742_MAGBIO' => 'mbi', 'MBI10_g27988_MAGBIO' => 'mbi', 'MBI11_g13057_MAGBIO' => 'mbi', 'MD02G1137200' => 'mdo', 'MD06G1137200' => 'mdo', 'MD07G1122300' => 'mdo', 'MD09G1078200' => 'mdo', 'MD13G1123700' => 'mdo', 'MD14G1151900' => 'mdo', 'MD17G1030900' => 'mdo', 'MD17G1068200' => 'mdo', 'MD17G1068600' => 'mdo', 'Medtr3g077540' => 'mtr', 'Medtr4g105530' => 'mtr', 'Medtr8g076580' => 'mtr', 'Medtr8g076590' => 'mtr', 'Medtr8g096410' => 'mtr', 'MELO3C016411.2' => 'cme', 'MELO3C017780.2' => 'cme', 'MELO3C022560.2' => 'cme', 'MELO3C026187.2' => 'cme', 'MELO3C026286.2' => 'cme', 'MELO3C032854.2' => 'cme', 'Migut.H02495' => 'egut', 'Migut.I00561' => 'egut', 'Migut.K01015' => 'egut', 'Migut.K01016' => 'egut', 'Migut.L00743' => 'egut', 'Migut.L00744' => 'egut', 'Migut.L00746' => 'egut', 'Migut.L00798' => 'egut', 'Migut.L00799' => 'egut', 'Migut.N02096' => 'egut', 'MSTRG.11259' => 'ama', 'MSTRG.23142' => 'ama', 'MSTRG.2499' => 'ama', 'Nitab4.5_0000003g0730' => 'nta', 'Nitab4.5_0000137g0020' => 'nta', 'Nitab4.5_0000721g0210' => 'nta', 'Nitab4.5_0000723g0050' => 'nta', 'Nitab4.5_0000913g0070' => 'nta', 'Nitab4.5_0001332g0040' => 'nta', 'Nitab4.5_0001771g0050' => 'nta', 'Nitab4.5_0001918g0050' => 'nta', 'Nitab4.5_0002686g0030' => 'nta', 'Nitab4.5_0003156g0020' => 'nta', 'Nitab4.5_0003383g0040' => 'nta', 'Nitab4.5_0003918g0010' => 'nta', 'Nitab4.5_0006760g0010' => 'nta', 'Nn1g05981' => 'nnu', 'Nn1g06288' => 'nnu', 'Nn3g16371' => 'nnu', 'Nn3g16786' => 'nnu', 'Nn4g22232' => 'nnu', 'Oeu005144.1' => 'oeu', 'Oeu005145.1' => 'oeu', 'Oeu011348.1' => 'oeu', 'Oeu016415.1' => 'oeu', 'Oeu023501.1' => 'oeu', 'Oeu044473.1' => 'oeu', 'Oeu048892.2' => 'oeu', 'Os01g0549200' => 'osa', 'Os02g0469300' => 'osa', 'Os04g0311100' => 'osa', 'Os06g0474900' => 'osa', 'Os10g0181700' => 'osa', 'Os11g0454800' => 'osa', 'Peaxi162Scf00037g00714' => 'pax', 'Peaxi162Scf00084g01217' => 'pax', 'Peaxi162Scf00257g00217' => 'pax', 'Peaxi162Scf00516g00215' => 'pax', 'Peaxi162Scf00689g00123' => 'pax', 'PGR044G2719' => 'pgr', 'PGR083G1360' => 'pgr', 'PGR102G2849' => 'pgr', 'PGR119G2534' => 'pgr', 'PGSC0003DMG400003538' => 'stu', 'PGSC0003DMG400028138' => 'stu', 'PGSC0003DMG400031732' => 'stu', 'PGSC0003DMG400038165' => 'stu', 'Phvul.002G284600' => 'pvu', 'Phvul.003G258200' => 'pvu', 'Phvul.009G176500' => 'pvu', 'Potri.003G167201' => 'ptr', 'Potri.005G118400' => 'ptr', 'Potri.012G089000' => 'ptr', 'Potri.012G102800' => 'ptr', 'Potri.015G079400' => 'ptr', 'Potri.015G100900' => 'ptr', 'Pp3c14_9810' => 'ppa', 'Pp3c15_10450' => 'ppa', 'Pp3c20_19150' => 'ppa', 'Pp3c23_12740' => 'ppa', 'Pp3c23_6310' => 'ppa', 'Pp3c24_3720' => 'ppa', 'Pp3c27_2580' => 'ppa', 'Pp3c9_8990' => 'ppa', 'PRCOL_00002854' => 'pco', 'Prupe.1G221200' => 'ppe', 'Prupe.3G289000' => 'ppe', 'Prupe.5G147000' => 'ppe', 'Prupe.6G157300' => 'ppe', 'Prupe.7G163400' => 'ppe', 'Psat0s2177g0040' => 'psa', 'Psat3g174760' => 'psa', 'Psat3g192160' => 'psa', 'Psat4g058520' => 'psa', 'Psat4g096840' => 'psa', 'Psat7g037320' => 'psa', 'PSO017G1274' => 'pso', 'PSO017G5166' => 'pso', 'PSO063G4558' => 'pso', 'PSO170G4458' => 'pso', 'PSO170G5005' => 'pso', 'PSO210G6156' => 'pso', 'PSO210G6635' => 'pso', 'PSO210G7397' => 'pso', 'PSO210G7700' => 'pso', 'PSO455G0035' => 'pso', 'PSO455G0180' => 'pso', 'PSO478G4515' => 'pso', 'PSO832G1305' => 'pso', 'PSO832G3489' => 'pso', 'QL02p075247' => 'qlo', 'QL03p051148' => 'qlo', 'QL05p010313' => 'qlo', 'QL06p034627' => 'qlo', 'QL10p001889' => 'qlo', 'QL10p010846' => 'qlo', 'RcHm_v2.0_Chr1g0350621' => 'rch', 'RcHm_v2.0_Chr1g0350641' => 'rch', 'RcHm_v2.0_Chr2g0092891' => 'rch', 'RcHm_v2.0_Chr2g0100251' => 'rch', 'RcHm_v2.0_Chr2g0158661' => 'rch', 'RcHm_v2.0_Chr2g0172741' => 'rch', 'RcHm_v2.0_Chr4g0429571' => 'rch', 'RcHm_v2.0_Chr5g0042471' => 'rch', 'RcHm_v2.0_Chr7g0189451' => 'rch', 'Rhsim08G0052000' => 'rsi', 'Rhsim08G0174400' => 'rsi', 'Rhsim08G0193200' => 'rsi', 'Rhsim10G0214800' => 'rsi', 'Rhsim10G0214900' => 'rsi', 'Rhsim10G0215000' => 'rsi', 'Rhsim12G0022900' => 'rsi', 'Rhsim12G0177500' => 'rsi', 'Rhsim12G0177700' => 'rsi', 'Sabra03G0122600' => 'sbr', 'Sabra05G0097400' => 'sbr', 'Sabra12G0064100' => 'sbr', 'Sabra15G0121300' => 'sbr', 'SalBow2G0642' => 'sbo', 'SalBow5G2667' => 'sbo', 'SalBow5G4873' => 'sbo', 'SalBow8G2395' => 'sbo', 'Sc03g0003290' => 'sci', 'Sc10g0010130' => 'sci', 'Sc22g0003650' => 'sci', 'Sed0001603' => 'sed', 'Sed0004259' => 'sed', 'Sed0006789' => 'sed', 'Sed0011838' => 'sed', 'Sed0012964' => 'sed', 'Sed0016383' => 'sed', 'Sed0019010' => 'sed', 'Sed0020188' => 'sed', 'SEGI_04702' => 'sgi', 'SEGI_17231' => 'sgi', 'SEGI_18877' => 'sgi', 'SEGI_25196' => 'sgi', 'SEGI_25515' => 'sgi', 'SEGI_28445' => 'sgi', 'SEGI_37452' => 'sgi', 'SGA_v2.0_scaffold188G40336' => 'sas', 'SGA_v2.0_scaffold228G43247' => 'sas', 'SGA_v2.0_scaffold280G46853' => 'sas', 'SGA_v2.0_scaffold34G13808' => 'sas', 'SGA_v2.0_scaffold40G15576' => 'sas', 'SGA_v2.0_scaffold611G53188' => 'sas', 'SGA_v2.0_scaffold78G25461' => 'sas', 'SGA_v2.0_scaffold90G27888' => 'sas', 'SHI08601' => 'shi', 'SHI08606' => 'shi', 'SHI17117' => 'shi', 'SHI17119' => 'shi', 'SMO118G0201' => 'smo', 'SMO169G0247' => 'smo', 'SMO176G0006' => 'smo', 'SMO176G0015' => 'smo', 'SMO202G0006' => 'smo', 'SMO240G0050' => 'smo', 'SMO286G0009' => 'smo', 'SMO338G0033' => 'smo', 'SMO356G0533' => 'smo', 'SMO364G0382' => 'smo', 'SMO367G0166' => 'smo', 'SMO367G1098' => 'smo', 'Solyc01g009920.3' => 'sly', 'Solyc01g099300.3' => 'sly', 'Solyc02g084700.3' => 'sly', 'Solyc03g097520.3' => 'sly', 'Solyc06g071580.3' => 'sly', 'Solyc10g081760.3' => 'sly', 'Sopen01g005480' => 'spe', 'Sopen01g042850' => 'spe', 'Sopen02g029370' => 'spe', 'Sopen03g028280' => 'spe', 'Sopen06g027870' => 'spe', 'Sopen10g032270' => 'spe', 'Sp5g18180' => 'spa', 'Sp6g12880' => 'spa', 'Sp6g30850' => 'spa', 'Sp7g22960' => 'spa', 'Sp7g34010' => 'spa', 'SpUn1326_0010' => 'spa', 'TAR371G0242' => 'tar', 'TAR622G0638' => 'tar', 'TAR628G1548' => 'tar', 'TAR629G1079' => 'tar', 'TAR629G3413' => 'tar', 'THA.LOC104804249' => 'tha', 'THA.LOC104808315' => 'tha', 'THA.LOC104809238' => 'tha', 'THA.LOC104825484' => 'tha', 'Thecc.01G025500' => 'tca', 'Thecc.03G015800' => 'tca', 'Thecc.03G018000' => 'tca', 'Thecc.03G134800' => 'tca', 'Thecc.04G014700' => 'tca', 'Thhalv10006991m.g' => 'esa', 'Thhalv10012707m.g' => 'esa', 'Thhalv10015739m.g' => 'esa', 'Thhalv10024553m.g' => 'esa', 'Thhalv10024673m.g' => 'esa', 'Thhalv10029187m.g' => 'esa', 'TPR.G12971' => 'tpr', 'TPR.G29396' => 'tpr', 'TPR.G33376' => 'tpr', 'TPR.G35508' => 'tpr', 'TPR.G35516' => 'tpr', 'TPR.G37317' => 'tpr', 'TPR.G37389' => 'tpr', 'TPR.G37523' => 'tpr', 'TPR.G559' => 'tpr', 'TWI14G0070' => 'twi', 'TWI14G0729' => 'twi', 'TWI18G0596' => 'twi', 'TWI39G0780' => 'twi', 'TWI39G0850' => 'twi', 'TWI73G1052' => 'twi', 'unitig_52.g17485' => 'ugi', 'unitig_61.g26355' => 'ugi', 'vmacro01040' => 'vma', 'vmacro16731' => 'vma', 'vmacro18270' => 'vma', 'vmacro19142' => 'vma', 'vmacro19407' => 'vma', 'vmacro19408' => 'vma', 'vmacro21899' => 'vma', 'vmacro21900' => 'vma', 'vmacro21901' => 'vma', 'VMungo0251G0490' => 'vmu', 'VMungo0251G1748' => 'vmu', 'VMungo1309G0421' => 'vmu', 'Zm00001eb086500' => 'zma', 'Zm00001eb150680' => 'zma', 'Zm00001eb162330' => 'zma', 'Zm00001eb203130' => 'zma', 'Zm00001eb369480' => 'zma', 'Zm00001eb382340' => 'zma', 'Zm00001eb416360' => 'zma' ), 'gf_id' => 'HOM05D000902', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000902' ), 'data_identifier' => 'HOM05D000902', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000902', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '663', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02470' => 'bna', 'A01p16260' => 'bna', 'A02p01680' => 'bna', 'A03p16600' => 'bna', 'A03p55660' => 'bna', 'A03p64160' => 'bna', 'A03p64170' => 'bna', 'A08p31900' => 'bna', 'A09p59530' => 'bna', 'A10p08230' => 'bna', 'A10p25090' => 'bna', 'Aa31LG3G7100' => 'aar', 'Aa31LG3G7110' => 'aar', 'Aa31LG6G13160' => 'aar', 'Aa31LG7G10770' => 'aar', 'Aa31LG7G3830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2723' => 'aag', 'Actinidia08045' => 'ach', 'Actinidia08888' => 'ach', 'Actinidia18333' => 'ach', 'Actinidia19334' => 'ach', 'Actinidia25552' => 'ach', 'Actinidia26089' => 'ach', 'Actinidia30615' => 'ach', 'Actinidia30616' => 'ach', 'Actinidia33083' => 'ach', 'Actinidia35762' => 'ach', 'Ah.02g110620' => 'amhyb', 'Ah.11g046390' => 'amhyb', 'AL1G31670' => 'aly', 'AL6G23730' => 'aly', 'AL7G14740' => 'aly', 'AL7G14750' => 'aly', 'AL7G14760' => 'aly', 'AL7G28220' => 'aly', 'AL8G24940' => 'aly', 'Aqoxy3G01665' => 'aox', 'Aqoxy3G02853' => 'aox', 'Aqoxy5G01513' => 'aox', 'Aqoxy5G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8SKA4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ75LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKDA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0LJZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7REX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZP4YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWX7I5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2QKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS0L9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPCD8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q161UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC7XCF' => 'arhy', 'AT1G19100' => 'ath', 'AT4G24970' => 'ath', 'AT4G36270' => 'ath', 'AT4G36280' => 'ath', 'AT4G36290' => 'ath', 'AT5G13130' => 'ath', 'AT5G50780' => 'ath', 'ATR0582G266' => 'atr', 'ATR0661G195' => 'atr', 'ATR1152G031' => 'atr', 'Atru.chr11.2382' => 'acertr', 'Atru.chr12.2337' => 'acertr', 'Atru.chr3.744' => 'acertr', 'Atru.chr6.1870' => 'acertr', 'Atru.chr9.2515' => 'acertr', 'AUR62004120' => 'cqu', 'AUR62005667' => 'cqu', 'AUR62007634' => 'cqu', 'AUR62008186' => 'cqu', 'AUR62008187' => 'cqu', 'AUR62008188' => 'cqu', 'AUR62027954' => 'cqu', 'AUR62028766' => 'cqu', 'AUR62028767' => 'cqu', 'AUR62028768' => 'cqu', 'AUR62028886' => 'cqu', 'AUR62029563' => 'cqu', 'AUR62038832' => 'cqu', 'BcaB01g04149' => 'bca', 'BcaB03g12940' => 'bca', 'BcaB03g13090' => 'bca', 'BcaB03g14466' => 'bca', 'BcaB05g24035' => 'bca', 'BcaC01g06050' => 'bca', 'BcaC04g19148' => 'bca', 'BcaC04g20761' => 'bca', 'BcaC06g32845' => 'bca', 'BcaC07g41274' => 'bca', 'BcaC09g50827' => 'bca', 'BcaNung00741' => 'bca', 'BcaNung00742' => 'bca', 'BcaNung01859' => 'bca', 'BcaNung03985' => 'bca', 'BcaNung03989' => 'bca', 'BcaNung05661' => 'bca', 'BolC1t00257H' => 'bol', 'BolC1t01956H' => 'bol', 'BolC2t06534H' => 'bol', 'BolC3t14334H' => 'bol', 'BolC5t30451H' => 'bol', 'BolC7t45880H' => 'bol', 'BolC7t46586H' => 'bol', 'BolC8t49301H' => 'bol', 'BolC8t51837H' => 'bol', 'BolC9t56822H' => 'bol', 'BolC9t59235H' => 'bol', 'BraA01t00234Z' => 'bra', 'BraA01t01563Z' => 'bra', 'BraA02t05147Z' => 'bra', 'BraA03t10947Z' => 'bra', 'BraA03t14633Z' => 'bra', 'BraA08t35112Z' => 'bra', 'BraA09t41330Z' => 'bra', 'BraA10t44570Z' => 'bra', 'C01p02670' => 'bna', 'C01p20260' => 'bna', 'C02p05890' => 'bna', 'C03p19530' => 'bna', 'C05p17470' => 'bna', 'C07p53900' => 'bna', 'C07p61630' => 'bna', 'C08p16800' => 'bna', 'C08p42810' => 'bna', 'C09p39480' => 'bna', 'C09p63980' => 'bna', 'CAN.G1001.7' => 'can', 'CAN.G1034.55' => 'can', 'CAN.G143.7' => 'can', 'CAN.G3340.1' => 'can', 'CAN.G358.19' => 'can', 'CAN.G373.2' => 'can', 'CAN.G674.16' => 'can', 'CAN.G674.17' => 'can', 'CAN.G674.18' => 'can', 'CAN.G732.2' => 'can', 'CAN.G732.3' => 'can', 'CAN.G993.39' => 'can', 'CANSAT01G2052' => 'cansat', 'CANSAT80G0070' => 'cansat', 'CANSAT80G0483' => 'cansat', 'CANSAT80G0625' => 'cansat', 'CARHR019690' => 'chi', 'CARHR080280' => 'chi', 'CARHR152750' => 'chi', 'CARHR152760' => 'chi', 'CARHR152770' => 'chi', 'CARHR200340' => 'chi', 'CARHR232370' => 'chi', 'CARHR244670' => 'chi', 'CARHR244680' => 'chi', 'CARHR257520' => 'chi', 'Carub.0001s1872' => 'cru', 'Carub.0006s1130' => 'cru', 'Carub.0007s0396' => 'cru', 'Carub.0007s0397' => 'cru', 'Carub.0007s1608' => 'cru', 'Carub.0008s1068' => 'cru', 'Carub.0008s1077' => 'cru', 'Ca_16158_v3' => 'car', 'Ca_17571_v3' => 'car', 'Ca_21936_v3' => 'car', 'Ca_22350_v3' => 'car', 'CBR_g22445' => 'cbr', 'CBR_g26290' => 'cbr', 'Cc04_g09610' => 'ccan', 'Cc04_g12280' => 'ccan', 'Cc07_g10230' => 'ccan', 'CDE02G0093' => 'cde', 'CDE02G0701' => 'cde', 'CDE04G1050' => 'cde', 'CDE05G1833' => 'cde', 'CDE05G3058' => 'cde', 'CDE05G3380' => 'cde', 'CDE06G0536' => 'cde', 'Cfa006923' => 'cfa', 'Cfa009402' => 'cfa', 'Cfa018751' => 'cfa', 'Cfa019164' => 'cfa', 'Cfa022935' => 'cfa', 'Ciclev10019081m.g' => 'ccl', 'Ciclev10025076m.g' => 'ccl', 'Ciclev10030712m.g' => 'ccl', 'Ciclev10033760m.g' => 'ccl', 'CiPaw.05G105600' => 'cil', 'CiPaw.08G136700' => 'cil', 'CiPaw.11G003900' => 'cil', 'CiPaw.11G023700' => 'cil', 'CiPaw.12G003700' => 'cil', 'ClCG06G017100' => 'cla', 'ClCG06G018110' => 'cla', 'ClCG07G008800' => 'cla', 'ClCG07G015330' => 'cla', 'COL.COLO4_13698' => 'col', 'COL.COLO4_16659' => 'col', 'COL.COLO4_21986' => 'col', 'COL.COLO4_24049' => 'col', 'COL.COLO4_29061' => 'col', 'COL.COLO4_29075' => 'col', 'COL.COLO4_30094' => 'col', 'Cpa.g.c33689' => 'cpa', 'Cpa.g.sc108.39' => 'cpa', 'Cpa.g.sc108.41' => 'cpa', 'Cpa.g.sc1163.1' => 'cpa', 'Cpa.g.sc4.155' => 'cpa', 'Cpa.g.sc6.194' => 'cpa', 'CsaV3_1G000340' => 'csa', 'CsaV3_1G001400' => 'csa', 'CsaV3_4G002220' => 'csa', 'CsaV3_4G005370' => 'csa', 'CSS0007487' => 'camsi', 'CSS0008066' => 'camsi', 'CSS0009120' => 'camsi', 'CSS0015512' => 'camsi', 'CSS0022409' => 'camsi', 'CSS0025358' => 'camsi', 'CSS0044547' => 'camsi', 'DCAR_013057' => 'dca', 'DCAR_015058' => 'dca', 'DCAR_016027' => 'dca', 'DCAR_017327' => 'dca', 'DCAR_020743' => 'dca', 'DCAR_026157' => 'dca', 'DCAR_032339' => 'dca', 'DCAR_032340' => 'dca', 'Dinv11200' => 'din', 'Dinv11201' => 'din', 'Dinv20631' => 'din', 'Dinv23182' => 'din', 'Dinv33466' => 'din', 'Dinv33583' => 'din', 'Dinv38565' => 'din', 'Duzib068G0200' => 'dzi', 'Duzib147G0132' => 'dzi', 'Duzib147G0635' => 'dzi', 'Duzib205G1670' => 'dzi', 'Duzib251G0606' => 'dzi', 'ECA232G3336' => 'eca', 'ECA232G3763' => 'eca', 'ECA232G4845' => 'eca', 'ECA234G1607' => 'eca', 'ECA246G0932' => 'eca', 'ECA247G0781' => 'eca', 'ECA247G1932' => 'eca', 'ECA247G2079' => 'eca', 'ECA247G3338' => 'eca', 'ECA247G4115' => 'eca', 'EL10Ac3g06552' => 'bvu', 'EL10Ac5g10721' => 'bvu', 'EL10Ac5g10722' => 'bvu', 'EL10Ac5g10723' => 'bvu', 'EL10Ac5g11361' => 'bvu', 'EL10Ac6g13553' => 'bvu', 'EL10As8g23872' => 'bvu', 'Eucgr.B00250' => 'egr', 'Eucgr.B00251' => 'egr', 'Eucgr.B03533' => 'egr', 'Eucgr.I02381' => 'egr', 'Eucgr.K02700' => 'egr', 'FAN02G0174' => 'fan', 'FAN02G3146' => 'fan', 'FAN04G1672' => 'fan', 'FAN04G2273' => 'fan', 'FAN05G2791' => 'fan', 'FAN05G4035' => 'fan', 'FAN07G0834' => 'fan', 'FAN08G1198' => 'fan', 'FAN09G4182' => 'fan', 'FAN12G0496' => 'fan', 'FAN13G1027' => 'fan', 'FAN13G2951' => 'fan', 'FAN14G0705' => 'fan', 'FAN14G0720' => 'fan', 'FAN17G0201' => 'fan', 'FAN17G2665' => 'fan', 'FAN18G1456' => 'fan', 'FAN18G1525' => 'fan', 'FAN18G3500' => 'fan', 'FAN28G2670' => 'fan', 'FvH4_1g12391' => 'fve', 'FvH4_4g23220' => 'fve', 'FvH4_5g08810' => 'fve', 'FvH4_5g28960' => 'fve', 'FvH4_6g42820' => 'fve', 'FvH4_6g51110' => 'fve', 'Glyma.02G051802' => 'gma', 'Glyma.04G185300' => 'gma', 'Glyma.05G202900' => 'gma', 'Glyma.08G010300' => 'gma', 'Glyma.16G131900' => 'gma', 'Glyma.17G087900' => 'gma', 'Gohir.A07G048600' => 'ghi', 'Gohir.A11G179000' => 'ghi', 'Gohir.A12G140900' => 'ghi', 'Gohir.A12G140950' => 'ghi', 'Gohir.A12G191700' => 'ghi', 'Gohir.A13G086300' => 'ghi', 'Gohir.D07G052900' => 'ghi', 'Gohir.D11G186600' => 'ghi', 'Gohir.D12G145575' => 'ghi', 'Gohir.D12G145650' => 'ghi', 'Gohir.D12G145725' => 'ghi', 'Gohir.D12G194050' => 'ghi', 'Gohir.D13G091800' => 'ghi', 'Gorai.001G055900' => 'gra', 'Gorai.007G198400' => 'gra', 'Gorai.008G157000' => 'gra', 'Gorai.008G157100' => 'gra', 'Gorai.008G208700' => 'gra', 'Gorai.010G138700' => 'gra', 'GSVIVG01000977001' => 'vvi', 'GSVIVG01007708001' => 'vvi', 'GSVIVG01008587001' => 'vvi', 'GSVIVG01018849001' => 'vvi', 'GSVIVG01032432001' => 'vvi', 'HanXRQChr02g0034131' => 'han', 'HanXRQChr02g0035981' => 'han', 'HanXRQChr02g0035991' => 'han', 'HanXRQChr05g0155611' => 'han', 'HanXRQChr05g0155621' => 'han', 'HanXRQChr08g0236501' => 'han', 'HanXRQChr09g0261321' => 'han', 'HanXRQChr09g0272081' => 'han', 'HanXRQChr10g0310741' => 'han', 'HanXRQChr11g0325591' => 'han', 'HanXRQChr12g0385691' => 'han', 'HanXRQChr13g0387801' => 'han', 'HanXRQChr15g0463011' => 'han', 'Haze_03826' => 'cav', 'Haze_03827' => 'cav', 'Haze_07183' => 'cav', 'Haze_07537' => 'cav', 'Haze_07539' => 'cav', 'Haze_12461' => 'cav', 'Haze_16115' => 'cav', 'Haze_16808' => 'cav', 'Haze_18531' => 'cav', 'Hma1.2p1_0046F.1_g026700' => 'hma', 'Hma1.2p1_0046F.1_g026710' => 'hma', 'Hma1.2p1_0168F.1_g074340' => 'hma', 'Hma1.2p1_0266F.1_g107030' => 'hma', 'Hma1.2p1_0266F.1_g107060' => 'hma', 'Hma1.2p1_0275F.1_g110510' => 'hma', 'Hma1.2p1_0592F.1_g185490' => 'hma', 'Hma1.2p1_0592F.1_g185500' => 'hma', 'Hma1.2p1_0592F.1_g185510' => 'hma', 'Hma1.2p1_0592F.1_g185520' => 'hma', 'Hma1.2p1_0592F.1_g185530' => 'hma', 'Hma1.2p1_0818F.1_g223450' => 'hma', 'HPP92_009708' => 'vpl', 'HPP92_009793' => 'vpl', 'HPP92_009796' => 'vpl', 'HPP92_009797' => 'vpl', 'HPP92_014940' => 'vpl', 'HPP92_014988' => 'vpl', 'Hund02463' => 'sun', 'Hund02760' => 'sun', 'Hund05071' => 'sun', 'Hund10108' => 'sun', 'Hund11204' => 'sun', 'Hund14016' => 'sun', 'Hund16464' => 'sun', 'Lalb_Chr09g0333391' => 'lal', 'Lalb_Chr11g0070461' => 'lal', 'Lalb_Chr12g0201671' => 'lal', 'Lalb_Chr13g0297161' => 'lal', 'Lj1g0002823' => 'lja', 'Lj3C1074T6' => 'lonja', 'Lj4A212T28' => 'lonja', 'Lj4g0005516' => 'lja', 'Lj4g0013705' => 'lja', 'Lj4g0027865' => 'lja', 'Lj5C92G16' => 'lonja', 'Lj5C92T12' => 'lonja', 'Lj7C596T3' => 'lonja', 'Lj9A446G59' => 'lonja', 'Lj9A482G21' => 'lonja', 'Lsat_1_v5_gn_1_28261' => 'lsa', 'Lsat_1_v5_gn_1_28281' => 'lsa', 'Lsat_1_v5_gn_1_32721' => 'lsa', 'Lsat_1_v5_gn_4_151760' => 'lsa', 'Lsat_1_v5_gn_4_2120' => 'lsa', 'Lsat_1_v5_gn_4_75761' => 'lsa', 'Lsat_1_v5_gn_5_10920' => 'lsa', 'Manes.02G099900' => 'mes', 'Manes.11G096200' => 'mes', 'Manes.12G007200' => 'mes', 'Manes.14G048300' => 'mes', 'Manes.17G114700' => 'mes', 'Mapoly0002s0070' => 'mpo', 'Mapoly0029s0099' => 'mpo', 'MBI07_g24742_MAGBIO' => 'mbi', 'MBI10_g27988_MAGBIO' => 'mbi', 'MBI11_g13057_MAGBIO' => 'mbi', 'MD02G1137200' => 'mdo', 'MD06G1137200' => 'mdo', 'MD07G1122300' => 'mdo', 'MD09G1078200' => 'mdo', 'MD13G1123700' => 'mdo', 'MD14G1151900' => 'mdo', 'MD17G1030900' => 'mdo', 'MD17G1068200' => 'mdo', 'MD17G1068600' => 'mdo', 'Medtr3g077540' => 'mtr', 'Medtr4g105530' => 'mtr', 'Medtr8g076580' => 'mtr', 'Medtr8g076590' => 'mtr', 'Medtr8g096410' => 'mtr', 'MELO3C016411.2' => 'cme', 'MELO3C017780.2' => 'cme', 'MELO3C022560.2' => 'cme', 'MELO3C026187.2' => 'cme', 'MELO3C026286.2' => 'cme', 'MELO3C032854.2' => 'cme', 'Migut.H02495' => 'egut', 'Migut.I00561' => 'egut', 'Migut.K01015' => 'egut', 'Migut.K01016' => 'egut', 'Migut.L00743' => 'egut', 'Migut.L00744' => 'egut', 'Migut.L00746' => 'egut', 'Migut.L00798' => 'egut', 'Migut.L00799' => 'egut', 'Migut.N02096' => 'egut', 'MSTRG.11259' => 'ama', 'MSTRG.23142' => 'ama', 'MSTRG.2499' => 'ama', 'Nitab4.5_0000003g0730' => 'nta', 'Nitab4.5_0000137g0020' => 'nta', 'Nitab4.5_0000721g0210' => 'nta', 'Nitab4.5_0000723g0050' => 'nta', 'Nitab4.5_0000913g0070' => 'nta', 'Nitab4.5_0001332g0040' => 'nta', 'Nitab4.5_0001771g0050' => 'nta', 'Nitab4.5_0001918g0050' => 'nta', 'Nitab4.5_0002686g0030' => 'nta', 'Nitab4.5_0003156g0020' => 'nta', 'Nitab4.5_0003383g0040' => 'nta', 'Nitab4.5_0003918g0010' => 'nta', 'Nitab4.5_0006760g0010' => 'nta', 'Nn1g05981' => 'nnu', 'Nn1g06288' => 'nnu', 'Nn3g16371' => 'nnu', 'Nn3g16786' => 'nnu', 'Nn4g22232' => 'nnu', 'Oeu005144.1' => 'oeu', 'Oeu005145.1' => 'oeu', 'Oeu011348.1' => 'oeu', 'Oeu016415.1' => 'oeu', 'Oeu023501.1' => 'oeu', 'Oeu044473.1' => 'oeu', 'Oeu048892.2' => 'oeu', 'Os01g0549200' => 'osa', 'Os02g0469300' => 'osa', 'Os04g0311100' => 'osa', 'Os06g0474900' => 'osa', 'Os10g0181700' => 'osa', 'Os11g0454800' => 'osa', 'Peaxi162Scf00037g00714' => 'pax', 'Peaxi162Scf00084g01217' => 'pax', 'Peaxi162Scf00257g00217' => 'pax', 'Peaxi162Scf00516g00215' => 'pax', 'Peaxi162Scf00689g00123' => 'pax', 'PGR044G2719' => 'pgr', 'PGR083G1360' => 'pgr', 'PGR102G2849' => 'pgr', 'PGR119G2534' => 'pgr', 'PGSC0003DMG400003538' => 'stu', 'PGSC0003DMG400028138' => 'stu', 'PGSC0003DMG400031732' => 'stu', 'PGSC0003DMG400038165' => 'stu', 'Phvul.002G284600' => 'pvu', 'Phvul.003G258200' => 'pvu', 'Phvul.009G176500' => 'pvu', 'Potri.003G167201' => 'ptr', 'Potri.005G118400' => 'ptr', 'Potri.012G089000' => 'ptr', 'Potri.012G102800' => 'ptr', 'Potri.015G079400' => 'ptr', 'Potri.015G100900' => 'ptr', 'Pp3c14_9810' => 'ppa', 'Pp3c15_10450' => 'ppa', 'Pp3c20_19150' => 'ppa', 'Pp3c23_12740' => 'ppa', 'Pp3c23_6310' => 'ppa', 'Pp3c24_3720' => 'ppa', 'Pp3c27_2580' => 'ppa', 'Pp3c9_8990' => 'ppa', 'PRCOL_00002854' => 'pco', 'Prupe.1G221200' => 'ppe', 'Prupe.3G289000' => 'ppe', 'Prupe.5G147000' => 'ppe', 'Prupe.6G157300' => 'ppe', 'Prupe.7G163400' => 'ppe', 'Psat0s2177g0040' => 'psa', 'Psat3g174760' => 'psa', 'Psat3g192160' => 'psa', 'Psat4g058520' => 'psa', 'Psat4g096840' => 'psa', 'Psat7g037320' => 'psa', 'PSO017G1274' => 'pso', 'PSO017G5166' => 'pso', 'PSO063G4558' => 'pso', 'PSO170G4458' => 'pso', 'PSO170G5005' => 'pso', 'PSO210G6156' => 'pso', 'PSO210G6635' => 'pso', 'PSO210G7397' => 'pso', 'PSO210G7700' => 'pso', 'PSO455G0035' => 'pso', 'PSO455G0180' => 'pso', 'PSO478G4515' => 'pso', 'PSO832G1305' => 'pso', 'PSO832G3489' => 'pso', 'QL02p075247' => 'qlo', 'QL03p051148' => 'qlo', 'QL05p010313' => 'qlo', 'QL06p034627' => 'qlo', 'QL10p001889' => 'qlo', 'QL10p010846' => 'qlo', 'RcHm_v2.0_Chr1g0350621' => 'rch', 'RcHm_v2.0_Chr1g0350641' => 'rch', 'RcHm_v2.0_Chr2g0092891' => 'rch', 'RcHm_v2.0_Chr2g0100251' => 'rch', 'RcHm_v2.0_Chr2g0158661' => 'rch', 'RcHm_v2.0_Chr2g0172741' => 'rch', 'RcHm_v2.0_Chr4g0429571' => 'rch', 'RcHm_v2.0_Chr5g0042471' => 'rch', 'RcHm_v2.0_Chr7g0189451' => 'rch', 'Rhsim08G0052000' => 'rsi', 'Rhsim08G0174400' => 'rsi', 'Rhsim08G0193200' => 'rsi', 'Rhsim10G0214800' => 'rsi', 'Rhsim10G0214900' => 'rsi', 'Rhsim10G0215000' => 'rsi', 'Rhsim12G0022900' => 'rsi', 'Rhsim12G0177500' => 'rsi', 'Rhsim12G0177700' => 'rsi', 'Sabra03G0122600' => 'sbr', 'Sabra05G0097400' => 'sbr', 'Sabra12G0064100' => 'sbr', 'Sabra15G0121300' => 'sbr', 'SalBow2G0642' => 'sbo', 'SalBow5G2667' => 'sbo', 'SalBow5G4873' => 'sbo', 'SalBow8G2395' => 'sbo', 'Sc03g0003290' => 'sci', 'Sc10g0010130' => 'sci', 'Sc22g0003650' => 'sci', 'Sed0001603' => 'sed', 'Sed0004259' => 'sed', 'Sed0006789' => 'sed', 'Sed0011838' => 'sed', 'Sed0012964' => 'sed', 'Sed0016383' => 'sed', 'Sed0019010' => 'sed', 'Sed0020188' => 'sed', 'SEGI_04702' => 'sgi', 'SEGI_17231' => 'sgi', 'SEGI_18877' => 'sgi', 'SEGI_25196' => 'sgi', 'SEGI_25515' => 'sgi', 'SEGI_28445' => 'sgi', 'SEGI_37452' => 'sgi', 'SGA_v2.0_scaffold188G40336' => 'sas', 'SGA_v2.0_scaffold228G43247' => 'sas', 'SGA_v2.0_scaffold280G46853' => 'sas', 'SGA_v2.0_scaffold34G13808' => 'sas', 'SGA_v2.0_scaffold40G15576' => 'sas', 'SGA_v2.0_scaffold611G53188' => 'sas', 'SGA_v2.0_scaffold78G25461' => 'sas', 'SGA_v2.0_scaffold90G27888' => 'sas', 'SHI08601' => 'shi', 'SHI08606' => 'shi', 'SHI17117' => 'shi', 'SHI17119' => 'shi', 'SMO118G0201' => 'smo', 'SMO169G0247' => 'smo', 'SMO176G0006' => 'smo', 'SMO176G0015' => 'smo', 'SMO202G0006' => 'smo', 'SMO240G0050' => 'smo', 'SMO286G0009' => 'smo', 'SMO338G0033' => 'smo', 'SMO356G0533' => 'smo', 'SMO364G0382' => 'smo', 'SMO367G0166' => 'smo', 'SMO367G1098' => 'smo', 'Solyc01g009920.3' => 'sly', 'Solyc01g099300.3' => 'sly', 'Solyc02g084700.3' => 'sly', 'Solyc03g097520.3' => 'sly', 'Solyc06g071580.3' => 'sly', 'Solyc10g081760.3' => 'sly', 'Sopen01g005480' => 'spe', 'Sopen01g042850' => 'spe', 'Sopen02g029370' => 'spe', 'Sopen03g028280' => 'spe', 'Sopen06g027870' => 'spe', 'Sopen10g032270' => 'spe', 'Sp5g18180' => 'spa', 'Sp6g12880' => 'spa', 'Sp6g30850' => 'spa', 'Sp7g22960' => 'spa', 'Sp7g34010' => 'spa', 'SpUn1326_0010' => 'spa', 'TAR371G0242' => 'tar', 'TAR622G0638' => 'tar', 'TAR628G1548' => 'tar', 'TAR629G1079' => 'tar', 'TAR629G3413' => 'tar', 'THA.LOC104804249' => 'tha', 'THA.LOC104808315' => 'tha', 'THA.LOC104809238' => 'tha', 'THA.LOC104825484' => 'tha', 'Thecc.01G025500' => 'tca', 'Thecc.03G015800' => 'tca', 'Thecc.03G018000' => 'tca', 'Thecc.03G134800' => 'tca', 'Thecc.04G014700' => 'tca', 'Thhalv10006991m.g' => 'esa', 'Thhalv10012707m.g' => 'esa', 'Thhalv10015739m.g' => 'esa', 'Thhalv10024553m.g' => 'esa', 'Thhalv10024673m.g' => 'esa', 'Thhalv10029187m.g' => 'esa', 'TPR.G12971' => 'tpr', 'TPR.G29396' => 'tpr', 'TPR.G33376' => 'tpr', 'TPR.G35508' => 'tpr', 'TPR.G35516' => 'tpr', 'TPR.G37317' => 'tpr', 'TPR.G37389' => 'tpr', 'TPR.G37523' => 'tpr', 'TPR.G559' => 'tpr', 'TWI14G0070' => 'twi', 'TWI14G0729' => 'twi', 'TWI18G0596' => 'twi', 'TWI39G0780' => 'twi', 'TWI39G0850' => 'twi', 'TWI73G1052' => 'twi', 'unitig_52.g17485' => 'ugi', 'unitig_61.g26355' => 'ugi', 'vmacro01040' => 'vma', 'vmacro16731' => 'vma', 'vmacro18270' => 'vma', 'vmacro19142' => 'vma', 'vmacro19407' => 'vma', 'vmacro19408' => 'vma', 'vmacro21899' => 'vma', 'vmacro21900' => 'vma', 'vmacro21901' => 'vma', 'VMungo0251G0490' => 'vmu', 'VMungo0251G1748' => 'vmu', 'VMungo1309G0421' => 'vmu', 'Zm00001eb086500' => 'zma', 'Zm00001eb150680' => 'zma', 'Zm00001eb162330' => 'zma', 'Zm00001eb203130' => 'zma', 'Zm00001eb369480' => 'zma', 'Zm00001eb382340' => 'zma', 'Zm00001eb416360' => 'zma' ) $gf_id = 'HOM05D000902' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000902' ) $data_identifier = 'HOM05D000902' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 13, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 10, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 6, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 9, 'hma' => (int) 12, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 4, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 6, 'ppa' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 6, 'rch' => (int) 9, 'rsi' => (int) 9, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 12, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 3, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416360' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000902', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '663', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02470' => 'bna', 'A01p16260' => 'bna', 'A02p01680' => 'bna', 'A03p16600' => 'bna', 'A03p55660' => 'bna', 'A03p64160' => 'bna', 'A03p64170' => 'bna', 'A08p31900' => 'bna', 'A09p59530' => 'bna', 'A10p08230' => 'bna', 'A10p25090' => 'bna', 'Aa31LG3G7100' => 'aar', 'Aa31LG3G7110' => 'aar', 'Aa31LG6G13160' => 'aar', 'Aa31LG7G10770' => 'aar', 'Aa31LG7G3830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2723' => 'aag', 'Actinidia08045' => 'ach', 'Actinidia08888' => 'ach', 'Actinidia18333' => 'ach', 'Actinidia19334' => 'ach', 'Actinidia25552' => 'ach', 'Actinidia26089' => 'ach', 'Actinidia30615' => 'ach', 'Actinidia30616' => 'ach', 'Actinidia33083' => 'ach', 'Actinidia35762' => 'ach', 'Ah.02g110620' => 'amhyb', 'Ah.11g046390' => 'amhyb', 'AL1G31670' => 'aly', 'AL6G23730' => 'aly', 'AL7G14740' => 'aly', 'AL7G14750' => 'aly', 'AL7G14760' => 'aly', 'AL7G28220' => 'aly', 'AL8G24940' => 'aly', 'Aqoxy3G01665' => 'aox', 'Aqoxy3G02853' => 'aox', 'Aqoxy5G01513' => 'aox', 'Aqoxy5G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8SKA4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ75LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKDA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0LJZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7REX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZP4YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWX7I5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2QKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS0L9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPCD8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q161UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC7XCF' => 'arhy', 'AT1G19100' => 'ath', 'AT4G24970' => 'ath', 'AT4G36270' => 'ath', 'AT4G36280' => 'ath', 'AT4G36290' => 'ath', 'AT5G13130' => 'ath', 'AT5G50780' => 'ath', 'ATR0582G266' => 'atr', 'ATR0661G195' => 'atr', 'ATR1152G031' => 'atr', 'Atru.chr11.2382' => 'acertr', 'Atru.chr12.2337' => 'acertr', 'Atru.chr3.744' => 'acertr', 'Atru.chr6.1870' => 'acertr', 'Atru.chr9.2515' => 'acertr', 'AUR62004120' => 'cqu', 'AUR62005667' => 'cqu', 'AUR62007634' => 'cqu', 'AUR62008186' => 'cqu', 'AUR62008187' => 'cqu', 'AUR62008188' => 'cqu', 'AUR62027954' => 'cqu', 'AUR62028766' => 'cqu', 'AUR62028767' => 'cqu', 'AUR62028768' => 'cqu', 'AUR62028886' => 'cqu', 'AUR62029563' => 'cqu', 'AUR62038832' => 'cqu', 'BcaB01g04149' => 'bca', 'BcaB03g12940' => 'bca', 'BcaB03g13090' => 'bca', 'BcaB03g14466' => 'bca', 'BcaB05g24035' => 'bca', 'BcaC01g06050' => 'bca', 'BcaC04g19148' => 'bca', 'BcaC04g20761' => 'bca', 'BcaC06g32845' => 'bca', 'BcaC07g41274' => 'bca', 'BcaC09g50827' => 'bca', 'BcaNung00741' => 'bca', 'BcaNung00742' => 'bca', 'BcaNung01859' => 'bca', 'BcaNung03985' => 'bca', 'BcaNung03989' => 'bca', 'BcaNung05661' => 'bca', 'BolC1t00257H' => 'bol', 'BolC1t01956H' => 'bol', 'BolC2t06534H' => 'bol', 'BolC3t14334H' => 'bol', 'BolC5t30451H' => 'bol', 'BolC7t45880H' => 'bol', 'BolC7t46586H' => 'bol', 'BolC8t49301H' => 'bol', 'BolC8t51837H' => 'bol', 'BolC9t56822H' => 'bol', 'BolC9t59235H' => 'bol', 'BraA01t00234Z' => 'bra', 'BraA01t01563Z' => 'bra', 'BraA02t05147Z' => 'bra', 'BraA03t10947Z' => 'bra', 'BraA03t14633Z' => 'bra', 'BraA08t35112Z' => 'bra', 'BraA09t41330Z' => 'bra', 'BraA10t44570Z' => 'bra', 'C01p02670' => 'bna', 'C01p20260' => 'bna', 'C02p05890' => 'bna', 'C03p19530' => 'bna', 'C05p17470' => 'bna', 'C07p53900' => 'bna', 'C07p61630' => 'bna', 'C08p16800' => 'bna', 'C08p42810' => 'bna', 'C09p39480' => 'bna', 'C09p63980' => 'bna', 'CAN.G1001.7' => 'can', 'CAN.G1034.55' => 'can', 'CAN.G143.7' => 'can', 'CAN.G3340.1' => 'can', 'CAN.G358.19' => 'can', 'CAN.G373.2' => 'can', 'CAN.G674.16' => 'can', 'CAN.G674.17' => 'can', 'CAN.G674.18' => 'can', 'CAN.G732.2' => 'can', 'CAN.G732.3' => 'can', 'CAN.G993.39' => 'can', 'CANSAT01G2052' => 'cansat', 'CANSAT80G0070' => 'cansat', 'CANSAT80G0483' => 'cansat', 'CANSAT80G0625' => 'cansat', 'CARHR019690' => 'chi', 'CARHR080280' => 'chi', 'CARHR152750' => 'chi', 'CARHR152760' => 'chi', 'CARHR152770' => 'chi', 'CARHR200340' => 'chi', 'CARHR232370' => 'chi', 'CARHR244670' => 'chi', 'CARHR244680' => 'chi', 'CARHR257520' => 'chi', 'Carub.0001s1872' => 'cru', 'Carub.0006s1130' => 'cru', 'Carub.0007s0396' => 'cru', 'Carub.0007s0397' => 'cru', 'Carub.0007s1608' => 'cru', 'Carub.0008s1068' => 'cru', 'Carub.0008s1077' => 'cru', 'Ca_16158_v3' => 'car', 'Ca_17571_v3' => 'car', 'Ca_21936_v3' => 'car', 'Ca_22350_v3' => 'car', 'CBR_g22445' => 'cbr', 'CBR_g26290' => 'cbr', 'Cc04_g09610' => 'ccan', 'Cc04_g12280' => 'ccan', 'Cc07_g10230' => 'ccan', 'CDE02G0093' => 'cde', 'CDE02G0701' => 'cde', 'CDE04G1050' => 'cde', 'CDE05G1833' => 'cde', 'CDE05G3058' => 'cde', 'CDE05G3380' => 'cde', 'CDE06G0536' => 'cde', 'Cfa006923' => 'cfa', 'Cfa009402' => 'cfa', 'Cfa018751' => 'cfa', 'Cfa019164' => 'cfa', 'Cfa022935' => 'cfa', 'Ciclev10019081m.g' => 'ccl', 'Ciclev10025076m.g' => 'ccl', 'Ciclev10030712m.g' => 'ccl', 'Ciclev10033760m.g' => 'ccl', 'CiPaw.05G105600' => 'cil', 'CiPaw.08G136700' => 'cil', 'CiPaw.11G003900' => 'cil', 'CiPaw.11G023700' => 'cil', 'CiPaw.12G003700' => 'cil', 'ClCG06G017100' => 'cla', 'ClCG06G018110' => 'cla', 'ClCG07G008800' => 'cla', 'ClCG07G015330' => 'cla', 'COL.COLO4_13698' => 'col', 'COL.COLO4_16659' => 'col', 'COL.COLO4_21986' => 'col', 'COL.COLO4_24049' => 'col', 'COL.COLO4_29061' => 'col', 'COL.COLO4_29075' => 'col', 'COL.COLO4_30094' => 'col', 'Cpa.g.c33689' => 'cpa', 'Cpa.g.sc108.39' => 'cpa', 'Cpa.g.sc108.41' => 'cpa', 'Cpa.g.sc1163.1' => 'cpa', 'Cpa.g.sc4.155' => 'cpa', 'Cpa.g.sc6.194' => 'cpa', 'CsaV3_1G000340' => 'csa', 'CsaV3_1G001400' => 'csa', 'CsaV3_4G002220' => 'csa', 'CsaV3_4G005370' => 'csa', 'CSS0007487' => 'camsi', 'CSS0008066' => 'camsi', 'CSS0009120' => 'camsi', 'CSS0015512' => 'camsi', 'CSS0022409' => 'camsi', 'CSS0025358' => 'camsi', 'CSS0044547' => 'camsi', 'DCAR_013057' => 'dca', 'DCAR_015058' => 'dca', 'DCAR_016027' => 'dca', 'DCAR_017327' => 'dca', 'DCAR_020743' => 'dca', 'DCAR_026157' => 'dca', 'DCAR_032339' => 'dca', 'DCAR_032340' => 'dca', 'Dinv11200' => 'din', 'Dinv11201' => 'din', 'Dinv20631' => 'din', 'Dinv23182' => 'din', 'Dinv33466' => 'din', 'Dinv33583' => 'din', 'Dinv38565' => 'din', 'Duzib068G0200' => 'dzi', 'Duzib147G0132' => 'dzi', 'Duzib147G0635' => 'dzi', 'Duzib205G1670' => 'dzi', 'Duzib251G0606' => 'dzi', 'ECA232G3336' => 'eca', 'ECA232G3763' => 'eca', 'ECA232G4845' => 'eca', 'ECA234G1607' => 'eca', 'ECA246G0932' => 'eca', 'ECA247G0781' => 'eca', 'ECA247G1932' => 'eca', 'ECA247G2079' => 'eca', 'ECA247G3338' => 'eca', 'ECA247G4115' => 'eca', 'EL10Ac3g06552' => 'bvu', 'EL10Ac5g10721' => 'bvu', 'EL10Ac5g10722' => 'bvu', 'EL10Ac5g10723' => 'bvu', 'EL10Ac5g11361' => 'bvu', 'EL10Ac6g13553' => 'bvu', 'EL10As8g23872' => 'bvu', 'Eucgr.B00250' => 'egr', 'Eucgr.B00251' => 'egr', 'Eucgr.B03533' => 'egr', 'Eucgr.I02381' => 'egr', 'Eucgr.K02700' => 'egr', 'FAN02G0174' => 'fan', 'FAN02G3146' => 'fan', 'FAN04G1672' => 'fan', 'FAN04G2273' => 'fan', 'FAN05G2791' => 'fan', 'FAN05G4035' => 'fan', 'FAN07G0834' => 'fan', 'FAN08G1198' => 'fan', 'FAN09G4182' => 'fan', 'FAN12G0496' => 'fan', 'FAN13G1027' => 'fan', 'FAN13G2951' => 'fan', 'FAN14G0705' => 'fan', 'FAN14G0720' => 'fan', 'FAN17G0201' => 'fan', 'FAN17G2665' => 'fan', 'FAN18G1456' => 'fan', 'FAN18G1525' => 'fan', 'FAN18G3500' => 'fan', 'FAN28G2670' => 'fan', 'FvH4_1g12391' => 'fve', 'FvH4_4g23220' => 'fve', 'FvH4_5g08810' => 'fve', 'FvH4_5g28960' => 'fve', 'FvH4_6g42820' => 'fve', 'FvH4_6g51110' => 'fve', 'Glyma.02G051802' => 'gma', 'Glyma.04G185300' => 'gma', 'Glyma.05G202900' => 'gma', 'Glyma.08G010300' => 'gma', 'Glyma.16G131900' => 'gma', 'Glyma.17G087900' => 'gma', 'Gohir.A07G048600' => 'ghi', 'Gohir.A11G179000' => 'ghi', 'Gohir.A12G140900' => 'ghi', 'Gohir.A12G140950' => 'ghi', 'Gohir.A12G191700' => 'ghi', 'Gohir.A13G086300' => 'ghi', 'Gohir.D07G052900' => 'ghi', 'Gohir.D11G186600' => 'ghi', 'Gohir.D12G145575' => 'ghi', 'Gohir.D12G145650' => 'ghi', 'Gohir.D12G145725' => 'ghi', 'Gohir.D12G194050' => 'ghi', 'Gohir.D13G091800' => 'ghi', 'Gorai.001G055900' => 'gra', 'Gorai.007G198400' => 'gra', 'Gorai.008G157000' => 'gra', 'Gorai.008G157100' => 'gra', 'Gorai.008G208700' => 'gra', 'Gorai.010G138700' => 'gra', 'GSVIVG01000977001' => 'vvi', 'GSVIVG01007708001' => 'vvi', 'GSVIVG01008587001' => 'vvi', 'GSVIVG01018849001' => 'vvi', 'GSVIVG01032432001' => 'vvi', 'HanXRQChr02g0034131' => 'han', 'HanXRQChr02g0035981' => 'han', 'HanXRQChr02g0035991' => 'han', 'HanXRQChr05g0155611' => 'han', 'HanXRQChr05g0155621' => 'han', 'HanXRQChr08g0236501' => 'han', 'HanXRQChr09g0261321' => 'han', 'HanXRQChr09g0272081' => 'han', 'HanXRQChr10g0310741' => 'han', 'HanXRQChr11g0325591' => 'han', 'HanXRQChr12g0385691' => 'han', 'HanXRQChr13g0387801' => 'han', 'HanXRQChr15g0463011' => 'han', 'Haze_03826' => 'cav', 'Haze_03827' => 'cav', 'Haze_07183' => 'cav', 'Haze_07537' => 'cav', 'Haze_07539' => 'cav', 'Haze_12461' => 'cav', 'Haze_16115' => 'cav', 'Haze_16808' => 'cav', 'Haze_18531' => 'cav', 'Hma1.2p1_0046F.1_g026700' => 'hma', 'Hma1.2p1_0046F.1_g026710' => 'hma', 'Hma1.2p1_0168F.1_g074340' => 'hma', 'Hma1.2p1_0266F.1_g107030' => 'hma', 'Hma1.2p1_0266F.1_g107060' => 'hma', 'Hma1.2p1_0275F.1_g110510' => 'hma', 'Hma1.2p1_0592F.1_g185490' => 'hma', 'Hma1.2p1_0592F.1_g185500' => 'hma', 'Hma1.2p1_0592F.1_g185510' => 'hma', 'Hma1.2p1_0592F.1_g185520' => 'hma', 'Hma1.2p1_0592F.1_g185530' => 'hma', 'Hma1.2p1_0818F.1_g223450' => 'hma', 'HPP92_009708' => 'vpl', 'HPP92_009793' => 'vpl', 'HPP92_009796' => 'vpl', 'HPP92_009797' => 'vpl', 'HPP92_014940' => 'vpl', 'HPP92_014988' => 'vpl', 'Hund02463' => 'sun', 'Hund02760' => 'sun', 'Hund05071' => 'sun', 'Hund10108' => 'sun', 'Hund11204' => 'sun', 'Hund14016' => 'sun', 'Hund16464' => 'sun', 'Lalb_Chr09g0333391' => 'lal', 'Lalb_Chr11g0070461' => 'lal', 'Lalb_Chr12g0201671' => 'lal', 'Lalb_Chr13g0297161' => 'lal', 'Lj1g0002823' => 'lja', 'Lj3C1074T6' => 'lonja', 'Lj4A212T28' => 'lonja', 'Lj4g0005516' => 'lja', 'Lj4g0013705' => 'lja', 'Lj4g0027865' => 'lja', 'Lj5C92G16' => 'lonja', 'Lj5C92T12' => 'lonja', 'Lj7C596T3' => 'lonja', 'Lj9A446G59' => 'lonja', 'Lj9A482G21' => 'lonja', 'Lsat_1_v5_gn_1_28261' => 'lsa', 'Lsat_1_v5_gn_1_28281' => 'lsa', 'Lsat_1_v5_gn_1_32721' => 'lsa', 'Lsat_1_v5_gn_4_151760' => 'lsa', 'Lsat_1_v5_gn_4_2120' => 'lsa', 'Lsat_1_v5_gn_4_75761' => 'lsa', 'Lsat_1_v5_gn_5_10920' => 'lsa', 'Manes.02G099900' => 'mes', 'Manes.11G096200' => 'mes', 'Manes.12G007200' => 'mes', 'Manes.14G048300' => 'mes', 'Manes.17G114700' => 'mes', 'Mapoly0002s0070' => 'mpo', 'Mapoly0029s0099' => 'mpo', 'MBI07_g24742_MAGBIO' => 'mbi', 'MBI10_g27988_MAGBIO' => 'mbi', 'MBI11_g13057_MAGBIO' => 'mbi', 'MD02G1137200' => 'mdo', 'MD06G1137200' => 'mdo', 'MD07G1122300' => 'mdo', 'MD09G1078200' => 'mdo', 'MD13G1123700' => 'mdo', 'MD14G1151900' => 'mdo', 'MD17G1030900' => 'mdo', 'MD17G1068200' => 'mdo', 'MD17G1068600' => 'mdo', 'Medtr3g077540' => 'mtr', 'Medtr4g105530' => 'mtr', 'Medtr8g076580' => 'mtr', 'Medtr8g076590' => 'mtr', 'Medtr8g096410' => 'mtr', 'MELO3C016411.2' => 'cme', 'MELO3C017780.2' => 'cme', 'MELO3C022560.2' => 'cme', 'MELO3C026187.2' => 'cme', 'MELO3C026286.2' => 'cme', 'MELO3C032854.2' => 'cme', 'Migut.H02495' => 'egut', 'Migut.I00561' => 'egut', 'Migut.K01015' => 'egut', 'Migut.K01016' => 'egut', 'Migut.L00743' => 'egut', 'Migut.L00744' => 'egut', 'Migut.L00746' => 'egut', 'Migut.L00798' => 'egut', 'Migut.L00799' => 'egut', 'Migut.N02096' => 'egut', 'MSTRG.11259' => 'ama', 'MSTRG.23142' => 'ama', 'MSTRG.2499' => 'ama', 'Nitab4.5_0000003g0730' => 'nta', 'Nitab4.5_0000137g0020' => 'nta', 'Nitab4.5_0000721g0210' => 'nta', 'Nitab4.5_0000723g0050' => 'nta', 'Nitab4.5_0000913g0070' => 'nta', 'Nitab4.5_0001332g0040' => 'nta', 'Nitab4.5_0001771g0050' => 'nta', 'Nitab4.5_0001918g0050' => 'nta', 'Nitab4.5_0002686g0030' => 'nta', 'Nitab4.5_0003156g0020' => 'nta', 'Nitab4.5_0003383g0040' => 'nta', 'Nitab4.5_0003918g0010' => 'nta', 'Nitab4.5_0006760g0010' => 'nta', 'Nn1g05981' => 'nnu', 'Nn1g06288' => 'nnu', 'Nn3g16371' => 'nnu', 'Nn3g16786' => 'nnu', 'Nn4g22232' => 'nnu', 'Oeu005144.1' => 'oeu', 'Oeu005145.1' => 'oeu', 'Oeu011348.1' => 'oeu', 'Oeu016415.1' => 'oeu', 'Oeu023501.1' => 'oeu', 'Oeu044473.1' => 'oeu', 'Oeu048892.2' => 'oeu', 'Os01g0549200' => 'osa', 'Os02g0469300' => 'osa', 'Os04g0311100' => 'osa', 'Os06g0474900' => 'osa', 'Os10g0181700' => 'osa', 'Os11g0454800' => 'osa', 'Peaxi162Scf00037g00714' => 'pax', 'Peaxi162Scf00084g01217' => 'pax', 'Peaxi162Scf00257g00217' => 'pax', 'Peaxi162Scf00516g00215' => 'pax', 'Peaxi162Scf00689g00123' => 'pax', 'PGR044G2719' => 'pgr', 'PGR083G1360' => 'pgr', 'PGR102G2849' => 'pgr', 'PGR119G2534' => 'pgr', 'PGSC0003DMG400003538' => 'stu', 'PGSC0003DMG400028138' => 'stu', 'PGSC0003DMG400031732' => 'stu', 'PGSC0003DMG400038165' => 'stu', 'Phvul.002G284600' => 'pvu', 'Phvul.003G258200' => 'pvu', 'Phvul.009G176500' => 'pvu', 'Potri.003G167201' => 'ptr', 'Potri.005G118400' => 'ptr', 'Potri.012G089000' => 'ptr', 'Potri.012G102800' => 'ptr', 'Potri.015G079400' => 'ptr', 'Potri.015G100900' => 'ptr', 'Pp3c14_9810' => 'ppa', 'Pp3c15_10450' => 'ppa', 'Pp3c20_19150' => 'ppa', 'Pp3c23_12740' => 'ppa', 'Pp3c23_6310' => 'ppa', 'Pp3c24_3720' => 'ppa', 'Pp3c27_2580' => 'ppa', 'Pp3c9_8990' => 'ppa', 'PRCOL_00002854' => 'pco', 'Prupe.1G221200' => 'ppe', 'Prupe.3G289000' => 'ppe', 'Prupe.5G147000' => 'ppe', 'Prupe.6G157300' => 'ppe', 'Prupe.7G163400' => 'ppe', 'Psat0s2177g0040' => 'psa', 'Psat3g174760' => 'psa', 'Psat3g192160' => 'psa', 'Psat4g058520' => 'psa', 'Psat4g096840' => 'psa', 'Psat7g037320' => 'psa', 'PSO017G1274' => 'pso', 'PSO017G5166' => 'pso', 'PSO063G4558' => 'pso', 'PSO170G4458' => 'pso', 'PSO170G5005' => 'pso', 'PSO210G6156' => 'pso', 'PSO210G6635' => 'pso', 'PSO210G7397' => 'pso', 'PSO210G7700' => 'pso', 'PSO455G0035' => 'pso', 'PSO455G0180' => 'pso', 'PSO478G4515' => 'pso', 'PSO832G1305' => 'pso', 'PSO832G3489' => 'pso', 'QL02p075247' => 'qlo', 'QL03p051148' => 'qlo', 'QL05p010313' => 'qlo', 'QL06p034627' => 'qlo', 'QL10p001889' => 'qlo', 'QL10p010846' => 'qlo', 'RcHm_v2.0_Chr1g0350621' => 'rch', 'RcHm_v2.0_Chr1g0350641' => 'rch', 'RcHm_v2.0_Chr2g0092891' => 'rch', 'RcHm_v2.0_Chr2g0100251' => 'rch', 'RcHm_v2.0_Chr2g0158661' => 'rch', 'RcHm_v2.0_Chr2g0172741' => 'rch', 'RcHm_v2.0_Chr4g0429571' => 'rch', 'RcHm_v2.0_Chr5g0042471' => 'rch', 'RcHm_v2.0_Chr7g0189451' => 'rch', 'Rhsim08G0052000' => 'rsi', 'Rhsim08G0174400' => 'rsi', 'Rhsim08G0193200' => 'rsi', 'Rhsim10G0214800' => 'rsi', 'Rhsim10G0214900' => 'rsi', 'Rhsim10G0215000' => 'rsi', 'Rhsim12G0022900' => 'rsi', 'Rhsim12G0177500' => 'rsi', 'Rhsim12G0177700' => 'rsi', 'Sabra03G0122600' => 'sbr', 'Sabra05G0097400' => 'sbr', 'Sabra12G0064100' => 'sbr', 'Sabra15G0121300' => 'sbr', 'SalBow2G0642' => 'sbo', 'SalBow5G2667' => 'sbo', 'SalBow5G4873' => 'sbo', 'SalBow8G2395' => 'sbo', 'Sc03g0003290' => 'sci', 'Sc10g0010130' => 'sci', 'Sc22g0003650' => 'sci', 'Sed0001603' => 'sed', 'Sed0004259' => 'sed', 'Sed0006789' => 'sed', 'Sed0011838' => 'sed', 'Sed0012964' => 'sed', 'Sed0016383' => 'sed', 'Sed0019010' => 'sed', 'Sed0020188' => 'sed', 'SEGI_04702' => 'sgi', 'SEGI_17231' => 'sgi', 'SEGI_18877' => 'sgi', 'SEGI_25196' => 'sgi', 'SEGI_25515' => 'sgi', 'SEGI_28445' => 'sgi', 'SEGI_37452' => 'sgi', 'SGA_v2.0_scaffold188G40336' => 'sas', 'SGA_v2.0_scaffold228G43247' => 'sas', 'SGA_v2.0_scaffold280G46853' => 'sas', 'SGA_v2.0_scaffold34G13808' => 'sas', 'SGA_v2.0_scaffold40G15576' => 'sas', 'SGA_v2.0_scaffold611G53188' => 'sas', 'SGA_v2.0_scaffold78G25461' => 'sas', 'SGA_v2.0_scaffold90G27888' => 'sas', 'SHI08601' => 'shi', 'SHI08606' => 'shi', 'SHI17117' => 'shi', 'SHI17119' => 'shi', 'SMO118G0201' => 'smo', 'SMO169G0247' => 'smo', 'SMO176G0006' => 'smo', 'SMO176G0015' => 'smo', 'SMO202G0006' => 'smo', 'SMO240G0050' => 'smo', 'SMO286G0009' => 'smo', 'SMO338G0033' => 'smo', 'SMO356G0533' => 'smo', 'SMO364G0382' => 'smo', 'SMO367G0166' => 'smo', 'SMO367G1098' => 'smo', 'Solyc01g009920.3' => 'sly', 'Solyc01g099300.3' => 'sly', 'Solyc02g084700.3' => 'sly', 'Solyc03g097520.3' => 'sly', 'Solyc06g071580.3' => 'sly', 'Solyc10g081760.3' => 'sly', 'Sopen01g005480' => 'spe', 'Sopen01g042850' => 'spe', 'Sopen02g029370' => 'spe', 'Sopen03g028280' => 'spe', 'Sopen06g027870' => 'spe', 'Sopen10g032270' => 'spe', 'Sp5g18180' => 'spa', 'Sp6g12880' => 'spa', 'Sp6g30850' => 'spa', 'Sp7g22960' => 'spa', 'Sp7g34010' => 'spa', 'SpUn1326_0010' => 'spa', 'TAR371G0242' => 'tar', 'TAR622G0638' => 'tar', 'TAR628G1548' => 'tar', 'TAR629G1079' => 'tar', 'TAR629G3413' => 'tar', 'THA.LOC104804249' => 'tha', 'THA.LOC104808315' => 'tha', 'THA.LOC104809238' => 'tha', 'THA.LOC104825484' => 'tha', 'Thecc.01G025500' => 'tca', 'Thecc.03G015800' => 'tca', 'Thecc.03G018000' => 'tca', 'Thecc.03G134800' => 'tca', 'Thecc.04G014700' => 'tca', 'Thhalv10006991m.g' => 'esa', 'Thhalv10012707m.g' => 'esa', 'Thhalv10015739m.g' => 'esa', 'Thhalv10024553m.g' => 'esa', 'Thhalv10024673m.g' => 'esa', 'Thhalv10029187m.g' => 'esa', 'TPR.G12971' => 'tpr', 'TPR.G29396' => 'tpr', 'TPR.G33376' => 'tpr', 'TPR.G35508' => 'tpr', 'TPR.G35516' => 'tpr', 'TPR.G37317' => 'tpr', 'TPR.G37389' => 'tpr', 'TPR.G37523' => 'tpr', 'TPR.G559' => 'tpr', 'TWI14G0070' => 'twi', 'TWI14G0729' => 'twi', 'TWI18G0596' => 'twi', 'TWI39G0780' => 'twi', 'TWI39G0850' => 'twi', 'TWI73G1052' => 'twi', 'unitig_52.g17485' => 'ugi', 'unitig_61.g26355' => 'ugi', 'vmacro01040' => 'vma', 'vmacro16731' => 'vma', 'vmacro18270' => 'vma', 'vmacro19142' => 'vma', 'vmacro19407' => 'vma', 'vmacro19408' => 'vma', 'vmacro21899' => 'vma', 'vmacro21900' => 'vma', 'vmacro21901' => 'vma', 'VMungo0251G0490' => 'vmu', 'VMungo0251G1748' => 'vmu', 'VMungo1309G0421' => 'vmu', 'Zm00001eb086500' => 'zma', 'Zm00001eb150680' => 'zma', 'Zm00001eb162330' => 'zma', 'Zm00001eb203130' => 'zma', 'Zm00001eb369480' => 'zma', 'Zm00001eb382340' => 'zma', 'Zm00001eb416360' => 'zma' ), 'gf_id' => 'HOM05D000902', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000902' ), 'data_identifier' => 'HOM05D000902', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000902', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '663', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02470' => 'bna', 'A01p16260' => 'bna', 'A02p01680' => 'bna', 'A03p16600' => 'bna', 'A03p55660' => 'bna', 'A03p64160' => 'bna', 'A03p64170' => 'bna', 'A08p31900' => 'bna', 'A09p59530' => 'bna', 'A10p08230' => 'bna', 'A10p25090' => 'bna', 'Aa31LG3G7100' => 'aar', 'Aa31LG3G7110' => 'aar', 'Aa31LG6G13160' => 'aar', 'Aa31LG7G10770' => 'aar', 'Aa31LG7G3830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2723' => 'aag', 'Actinidia08045' => 'ach', 'Actinidia08888' => 'ach', 'Actinidia18333' => 'ach', 'Actinidia19334' => 'ach', 'Actinidia25552' => 'ach', 'Actinidia26089' => 'ach', 'Actinidia30615' => 'ach', 'Actinidia30616' => 'ach', 'Actinidia33083' => 'ach', 'Actinidia35762' => 'ach', 'Ah.02g110620' => 'amhyb', 'Ah.11g046390' => 'amhyb', 'AL1G31670' => 'aly', 'AL6G23730' => 'aly', 'AL7G14740' => 'aly', 'AL7G14750' => 'aly', 'AL7G14760' => 'aly', 'AL7G28220' => 'aly', 'AL8G24940' => 'aly', 'Aqoxy3G01665' => 'aox', 'Aqoxy3G02853' => 'aox', 'Aqoxy5G01513' => 'aox', 'Aqoxy5G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8SKA4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ75LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKDA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0LJZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7REX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZP4YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWX7I5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2QKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS0L9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPCD8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q161UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC7XCF' => 'arhy', 'AT1G19100' => 'ath', 'AT4G24970' => 'ath', 'AT4G36270' => 'ath', 'AT4G36280' => 'ath', 'AT4G36290' => 'ath', 'AT5G13130' => 'ath', 'AT5G50780' => 'ath', 'ATR0582G266' => 'atr', 'ATR0661G195' => 'atr', 'ATR1152G031' => 'atr', 'Atru.chr11.2382' => 'acertr', 'Atru.chr12.2337' => 'acertr', 'Atru.chr3.744' => 'acertr', 'Atru.chr6.1870' => 'acertr', 'Atru.chr9.2515' => 'acertr', 'AUR62004120' => 'cqu', 'AUR62005667' => 'cqu', 'AUR62007634' => 'cqu', 'AUR62008186' => 'cqu', 'AUR62008187' => 'cqu', 'AUR62008188' => 'cqu', 'AUR62027954' => 'cqu', 'AUR62028766' => 'cqu', 'AUR62028767' => 'cqu', 'AUR62028768' => 'cqu', 'AUR62028886' => 'cqu', 'AUR62029563' => 'cqu', 'AUR62038832' => 'cqu', 'BcaB01g04149' => 'bca', 'BcaB03g12940' => 'bca', 'BcaB03g13090' => 'bca', 'BcaB03g14466' => 'bca', 'BcaB05g24035' => 'bca', 'BcaC01g06050' => 'bca', 'BcaC04g19148' => 'bca', 'BcaC04g20761' => 'bca', 'BcaC06g32845' => 'bca', 'BcaC07g41274' => 'bca', 'BcaC09g50827' => 'bca', 'BcaNung00741' => 'bca', 'BcaNung00742' => 'bca', 'BcaNung01859' => 'bca', 'BcaNung03985' => 'bca', 'BcaNung03989' => 'bca', 'BcaNung05661' => 'bca', 'BolC1t00257H' => 'bol', 'BolC1t01956H' => 'bol', 'BolC2t06534H' => 'bol', 'BolC3t14334H' => 'bol', 'BolC5t30451H' => 'bol', 'BolC7t45880H' => 'bol', 'BolC7t46586H' => 'bol', 'BolC8t49301H' => 'bol', 'BolC8t51837H' => 'bol', 'BolC9t56822H' => 'bol', 'BolC9t59235H' => 'bol', 'BraA01t00234Z' => 'bra', 'BraA01t01563Z' => 'bra', 'BraA02t05147Z' => 'bra', 'BraA03t10947Z' => 'bra', 'BraA03t14633Z' => 'bra', 'BraA08t35112Z' => 'bra', 'BraA09t41330Z' => 'bra', 'BraA10t44570Z' => 'bra', 'C01p02670' => 'bna', 'C01p20260' => 'bna', 'C02p05890' => 'bna', 'C03p19530' => 'bna', 'C05p17470' => 'bna', 'C07p53900' => 'bna', 'C07p61630' => 'bna', 'C08p16800' => 'bna', 'C08p42810' => 'bna', 'C09p39480' => 'bna', 'C09p63980' => 'bna', 'CAN.G1001.7' => 'can', 'CAN.G1034.55' => 'can', 'CAN.G143.7' => 'can', 'CAN.G3340.1' => 'can', 'CAN.G358.19' => 'can', 'CAN.G373.2' => 'can', 'CAN.G674.16' => 'can', 'CAN.G674.17' => 'can', 'CAN.G674.18' => 'can', 'CAN.G732.2' => 'can', 'CAN.G732.3' => 'can', 'CAN.G993.39' => 'can', 'CANSAT01G2052' => 'cansat', 'CANSAT80G0070' => 'cansat', 'CANSAT80G0483' => 'cansat', 'CANSAT80G0625' => 'cansat', 'CARHR019690' => 'chi', 'CARHR080280' => 'chi', 'CARHR152750' => 'chi', 'CARHR152760' => 'chi', 'CARHR152770' => 'chi', 'CARHR200340' => 'chi', 'CARHR232370' => 'chi', 'CARHR244670' => 'chi', 'CARHR244680' => 'chi', 'CARHR257520' => 'chi', 'Carub.0001s1872' => 'cru', 'Carub.0006s1130' => 'cru', 'Carub.0007s0396' => 'cru', 'Carub.0007s0397' => 'cru', 'Carub.0007s1608' => 'cru', 'Carub.0008s1068' => 'cru', 'Carub.0008s1077' => 'cru', 'Ca_16158_v3' => 'car', 'Ca_17571_v3' => 'car', 'Ca_21936_v3' => 'car', 'Ca_22350_v3' => 'car', 'CBR_g22445' => 'cbr', 'CBR_g26290' => 'cbr', 'Cc04_g09610' => 'ccan', 'Cc04_g12280' => 'ccan', 'Cc07_g10230' => 'ccan', 'CDE02G0093' => 'cde', 'CDE02G0701' => 'cde', 'CDE04G1050' => 'cde', 'CDE05G1833' => 'cde', 'CDE05G3058' => 'cde', 'CDE05G3380' => 'cde', 'CDE06G0536' => 'cde', 'Cfa006923' => 'cfa', 'Cfa009402' => 'cfa', 'Cfa018751' => 'cfa', 'Cfa019164' => 'cfa', 'Cfa022935' => 'cfa', 'Ciclev10019081m.g' => 'ccl', 'Ciclev10025076m.g' => 'ccl', 'Ciclev10030712m.g' => 'ccl', 'Ciclev10033760m.g' => 'ccl', 'CiPaw.05G105600' => 'cil', 'CiPaw.08G136700' => 'cil', 'CiPaw.11G003900' => 'cil', 'CiPaw.11G023700' => 'cil', 'CiPaw.12G003700' => 'cil', 'ClCG06G017100' => 'cla', 'ClCG06G018110' => 'cla', 'ClCG07G008800' => 'cla', 'ClCG07G015330' => 'cla', 'COL.COLO4_13698' => 'col', 'COL.COLO4_16659' => 'col', 'COL.COLO4_21986' => 'col', 'COL.COLO4_24049' => 'col', 'COL.COLO4_29061' => 'col', 'COL.COLO4_29075' => 'col', 'COL.COLO4_30094' => 'col', 'Cpa.g.c33689' => 'cpa', 'Cpa.g.sc108.39' => 'cpa', 'Cpa.g.sc108.41' => 'cpa', 'Cpa.g.sc1163.1' => 'cpa', 'Cpa.g.sc4.155' => 'cpa', 'Cpa.g.sc6.194' => 'cpa', 'CsaV3_1G000340' => 'csa', 'CsaV3_1G001400' => 'csa', 'CsaV3_4G002220' => 'csa', 'CsaV3_4G005370' => 'csa', 'CSS0007487' => 'camsi', 'CSS0008066' => 'camsi', 'CSS0009120' => 'camsi', 'CSS0015512' => 'camsi', 'CSS0022409' => 'camsi', 'CSS0025358' => 'camsi', 'CSS0044547' => 'camsi', 'DCAR_013057' => 'dca', 'DCAR_015058' => 'dca', 'DCAR_016027' => 'dca', 'DCAR_017327' => 'dca', 'DCAR_020743' => 'dca', 'DCAR_026157' => 'dca', 'DCAR_032339' => 'dca', 'DCAR_032340' => 'dca', 'Dinv11200' => 'din', 'Dinv11201' => 'din', 'Dinv20631' => 'din', 'Dinv23182' => 'din', 'Dinv33466' => 'din', 'Dinv33583' => 'din', 'Dinv38565' => 'din', 'Duzib068G0200' => 'dzi', 'Duzib147G0132' => 'dzi', 'Duzib147G0635' => 'dzi', 'Duzib205G1670' => 'dzi', 'Duzib251G0606' => 'dzi', 'ECA232G3336' => 'eca', 'ECA232G3763' => 'eca', 'ECA232G4845' => 'eca', 'ECA234G1607' => 'eca', 'ECA246G0932' => 'eca', 'ECA247G0781' => 'eca', 'ECA247G1932' => 'eca', 'ECA247G2079' => 'eca', 'ECA247G3338' => 'eca', 'ECA247G4115' => 'eca', 'EL10Ac3g06552' => 'bvu', 'EL10Ac5g10721' => 'bvu', 'EL10Ac5g10722' => 'bvu', 'EL10Ac5g10723' => 'bvu', 'EL10Ac5g11361' => 'bvu', 'EL10Ac6g13553' => 'bvu', 'EL10As8g23872' => 'bvu', 'Eucgr.B00250' => 'egr', 'Eucgr.B00251' => 'egr', 'Eucgr.B03533' => 'egr', 'Eucgr.I02381' => 'egr', 'Eucgr.K02700' => 'egr', 'FAN02G0174' => 'fan', 'FAN02G3146' => 'fan', 'FAN04G1672' => 'fan', 'FAN04G2273' => 'fan', 'FAN05G2791' => 'fan', 'FAN05G4035' => 'fan', 'FAN07G0834' => 'fan', 'FAN08G1198' => 'fan', 'FAN09G4182' => 'fan', 'FAN12G0496' => 'fan', 'FAN13G1027' => 'fan', 'FAN13G2951' => 'fan', 'FAN14G0705' => 'fan', 'FAN14G0720' => 'fan', 'FAN17G0201' => 'fan', 'FAN17G2665' => 'fan', 'FAN18G1456' => 'fan', 'FAN18G1525' => 'fan', 'FAN18G3500' => 'fan', 'FAN28G2670' => 'fan', 'FvH4_1g12391' => 'fve', 'FvH4_4g23220' => 'fve', 'FvH4_5g08810' => 'fve', 'FvH4_5g28960' => 'fve', 'FvH4_6g42820' => 'fve', 'FvH4_6g51110' => 'fve', 'Glyma.02G051802' => 'gma', 'Glyma.04G185300' => 'gma', 'Glyma.05G202900' => 'gma', 'Glyma.08G010300' => 'gma', 'Glyma.16G131900' => 'gma', 'Glyma.17G087900' => 'gma', 'Gohir.A07G048600' => 'ghi', 'Gohir.A11G179000' => 'ghi', 'Gohir.A12G140900' => 'ghi', 'Gohir.A12G140950' => 'ghi', 'Gohir.A12G191700' => 'ghi', 'Gohir.A13G086300' => 'ghi', 'Gohir.D07G052900' => 'ghi', 'Gohir.D11G186600' => 'ghi', 'Gohir.D12G145575' => 'ghi', 'Gohir.D12G145650' => 'ghi', 'Gohir.D12G145725' => 'ghi', 'Gohir.D12G194050' => 'ghi', 'Gohir.D13G091800' => 'ghi', 'Gorai.001G055900' => 'gra', 'Gorai.007G198400' => 'gra', 'Gorai.008G157000' => 'gra', 'Gorai.008G157100' => 'gra', 'Gorai.008G208700' => 'gra', 'Gorai.010G138700' => 'gra', 'GSVIVG01000977001' => 'vvi', 'GSVIVG01007708001' => 'vvi', 'GSVIVG01008587001' => 'vvi', 'GSVIVG01018849001' => 'vvi', 'GSVIVG01032432001' => 'vvi', 'HanXRQChr02g0034131' => 'han', 'HanXRQChr02g0035981' => 'han', 'HanXRQChr02g0035991' => 'han', 'HanXRQChr05g0155611' => 'han', 'HanXRQChr05g0155621' => 'han', 'HanXRQChr08g0236501' => 'han', 'HanXRQChr09g0261321' => 'han', 'HanXRQChr09g0272081' => 'han', 'HanXRQChr10g0310741' => 'han', 'HanXRQChr11g0325591' => 'han', 'HanXRQChr12g0385691' => 'han', 'HanXRQChr13g0387801' => 'han', 'HanXRQChr15g0463011' => 'han', 'Haze_03826' => 'cav', 'Haze_03827' => 'cav', 'Haze_07183' => 'cav', 'Haze_07537' => 'cav', 'Haze_07539' => 'cav', 'Haze_12461' => 'cav', 'Haze_16115' => 'cav', 'Haze_16808' => 'cav', 'Haze_18531' => 'cav', 'Hma1.2p1_0046F.1_g026700' => 'hma', 'Hma1.2p1_0046F.1_g026710' => 'hma', 'Hma1.2p1_0168F.1_g074340' => 'hma', 'Hma1.2p1_0266F.1_g107030' => 'hma', 'Hma1.2p1_0266F.1_g107060' => 'hma', 'Hma1.2p1_0275F.1_g110510' => 'hma', 'Hma1.2p1_0592F.1_g185490' => 'hma', 'Hma1.2p1_0592F.1_g185500' => 'hma', 'Hma1.2p1_0592F.1_g185510' => 'hma', 'Hma1.2p1_0592F.1_g185520' => 'hma', 'Hma1.2p1_0592F.1_g185530' => 'hma', 'Hma1.2p1_0818F.1_g223450' => 'hma', 'HPP92_009708' => 'vpl', 'HPP92_009793' => 'vpl', 'HPP92_009796' => 'vpl', 'HPP92_009797' => 'vpl', 'HPP92_014940' => 'vpl', 'HPP92_014988' => 'vpl', 'Hund02463' => 'sun', 'Hund02760' => 'sun', 'Hund05071' => 'sun', 'Hund10108' => 'sun', 'Hund11204' => 'sun', 'Hund14016' => 'sun', 'Hund16464' => 'sun', 'Lalb_Chr09g0333391' => 'lal', 'Lalb_Chr11g0070461' => 'lal', 'Lalb_Chr12g0201671' => 'lal', 'Lalb_Chr13g0297161' => 'lal', 'Lj1g0002823' => 'lja', 'Lj3C1074T6' => 'lonja', 'Lj4A212T28' => 'lonja', 'Lj4g0005516' => 'lja', 'Lj4g0013705' => 'lja', 'Lj4g0027865' => 'lja', 'Lj5C92G16' => 'lonja', 'Lj5C92T12' => 'lonja', 'Lj7C596T3' => 'lonja', 'Lj9A446G59' => 'lonja', 'Lj9A482G21' => 'lonja', 'Lsat_1_v5_gn_1_28261' => 'lsa', 'Lsat_1_v5_gn_1_28281' => 'lsa', 'Lsat_1_v5_gn_1_32721' => 'lsa', 'Lsat_1_v5_gn_4_151760' => 'lsa', 'Lsat_1_v5_gn_4_2120' => 'lsa', 'Lsat_1_v5_gn_4_75761' => 'lsa', 'Lsat_1_v5_gn_5_10920' => 'lsa', 'Manes.02G099900' => 'mes', 'Manes.11G096200' => 'mes', 'Manes.12G007200' => 'mes', 'Manes.14G048300' => 'mes', 'Manes.17G114700' => 'mes', 'Mapoly0002s0070' => 'mpo', 'Mapoly0029s0099' => 'mpo', 'MBI07_g24742_MAGBIO' => 'mbi', 'MBI10_g27988_MAGBIO' => 'mbi', 'MBI11_g13057_MAGBIO' => 'mbi', 'MD02G1137200' => 'mdo', 'MD06G1137200' => 'mdo', 'MD07G1122300' => 'mdo', 'MD09G1078200' => 'mdo', 'MD13G1123700' => 'mdo', 'MD14G1151900' => 'mdo', 'MD17G1030900' => 'mdo', 'MD17G1068200' => 'mdo', 'MD17G1068600' => 'mdo', 'Medtr3g077540' => 'mtr', 'Medtr4g105530' => 'mtr', 'Medtr8g076580' => 'mtr', 'Medtr8g076590' => 'mtr', 'Medtr8g096410' => 'mtr', 'MELO3C016411.2' => 'cme', 'MELO3C017780.2' => 'cme', 'MELO3C022560.2' => 'cme', 'MELO3C026187.2' => 'cme', 'MELO3C026286.2' => 'cme', 'MELO3C032854.2' => 'cme', 'Migut.H02495' => 'egut', 'Migut.I00561' => 'egut', 'Migut.K01015' => 'egut', 'Migut.K01016' => 'egut', 'Migut.L00743' => 'egut', 'Migut.L00744' => 'egut', 'Migut.L00746' => 'egut', 'Migut.L00798' => 'egut', 'Migut.L00799' => 'egut', 'Migut.N02096' => 'egut', 'MSTRG.11259' => 'ama', 'MSTRG.23142' => 'ama', 'MSTRG.2499' => 'ama', 'Nitab4.5_0000003g0730' => 'nta', 'Nitab4.5_0000137g0020' => 'nta', 'Nitab4.5_0000721g0210' => 'nta', 'Nitab4.5_0000723g0050' => 'nta', 'Nitab4.5_0000913g0070' => 'nta', 'Nitab4.5_0001332g0040' => 'nta', 'Nitab4.5_0001771g0050' => 'nta', 'Nitab4.5_0001918g0050' => 'nta', 'Nitab4.5_0002686g0030' => 'nta', 'Nitab4.5_0003156g0020' => 'nta', 'Nitab4.5_0003383g0040' => 'nta', 'Nitab4.5_0003918g0010' => 'nta', 'Nitab4.5_0006760g0010' => 'nta', 'Nn1g05981' => 'nnu', 'Nn1g06288' => 'nnu', 'Nn3g16371' => 'nnu', 'Nn3g16786' => 'nnu', 'Nn4g22232' => 'nnu', 'Oeu005144.1' => 'oeu', 'Oeu005145.1' => 'oeu', 'Oeu011348.1' => 'oeu', 'Oeu016415.1' => 'oeu', 'Oeu023501.1' => 'oeu', 'Oeu044473.1' => 'oeu', 'Oeu048892.2' => 'oeu', 'Os01g0549200' => 'osa', 'Os02g0469300' => 'osa', 'Os04g0311100' => 'osa', 'Os06g0474900' => 'osa', 'Os10g0181700' => 'osa', 'Os11g0454800' => 'osa', 'Peaxi162Scf00037g00714' => 'pax', 'Peaxi162Scf00084g01217' => 'pax', 'Peaxi162Scf00257g00217' => 'pax', 'Peaxi162Scf00516g00215' => 'pax', 'Peaxi162Scf00689g00123' => 'pax', 'PGR044G2719' => 'pgr', 'PGR083G1360' => 'pgr', 'PGR102G2849' => 'pgr', 'PGR119G2534' => 'pgr', 'PGSC0003DMG400003538' => 'stu', 'PGSC0003DMG400028138' => 'stu', 'PGSC0003DMG400031732' => 'stu', 'PGSC0003DMG400038165' => 'stu', 'Phvul.002G284600' => 'pvu', 'Phvul.003G258200' => 'pvu', 'Phvul.009G176500' => 'pvu', 'Potri.003G167201' => 'ptr', 'Potri.005G118400' => 'ptr', 'Potri.012G089000' => 'ptr', 'Potri.012G102800' => 'ptr', 'Potri.015G079400' => 'ptr', 'Potri.015G100900' => 'ptr', 'Pp3c14_9810' => 'ppa', 'Pp3c15_10450' => 'ppa', 'Pp3c20_19150' => 'ppa', 'Pp3c23_12740' => 'ppa', 'Pp3c23_6310' => 'ppa', 'Pp3c24_3720' => 'ppa', 'Pp3c27_2580' => 'ppa', 'Pp3c9_8990' => 'ppa', 'PRCOL_00002854' => 'pco', 'Prupe.1G221200' => 'ppe', 'Prupe.3G289000' => 'ppe', 'Prupe.5G147000' => 'ppe', 'Prupe.6G157300' => 'ppe', 'Prupe.7G163400' => 'ppe', 'Psat0s2177g0040' => 'psa', 'Psat3g174760' => 'psa', 'Psat3g192160' => 'psa', 'Psat4g058520' => 'psa', 'Psat4g096840' => 'psa', 'Psat7g037320' => 'psa', 'PSO017G1274' => 'pso', 'PSO017G5166' => 'pso', 'PSO063G4558' => 'pso', 'PSO170G4458' => 'pso', 'PSO170G5005' => 'pso', 'PSO210G6156' => 'pso', 'PSO210G6635' => 'pso', 'PSO210G7397' => 'pso', 'PSO210G7700' => 'pso', 'PSO455G0035' => 'pso', 'PSO455G0180' => 'pso', 'PSO478G4515' => 'pso', 'PSO832G1305' => 'pso', 'PSO832G3489' => 'pso', 'QL02p075247' => 'qlo', 'QL03p051148' => 'qlo', 'QL05p010313' => 'qlo', 'QL06p034627' => 'qlo', 'QL10p001889' => 'qlo', 'QL10p010846' => 'qlo', 'RcHm_v2.0_Chr1g0350621' => 'rch', 'RcHm_v2.0_Chr1g0350641' => 'rch', 'RcHm_v2.0_Chr2g0092891' => 'rch', 'RcHm_v2.0_Chr2g0100251' => 'rch', 'RcHm_v2.0_Chr2g0158661' => 'rch', 'RcHm_v2.0_Chr2g0172741' => 'rch', 'RcHm_v2.0_Chr4g0429571' => 'rch', 'RcHm_v2.0_Chr5g0042471' => 'rch', 'RcHm_v2.0_Chr7g0189451' => 'rch', 'Rhsim08G0052000' => 'rsi', 'Rhsim08G0174400' => 'rsi', 'Rhsim08G0193200' => 'rsi', 'Rhsim10G0214800' => 'rsi', 'Rhsim10G0214900' => 'rsi', 'Rhsim10G0215000' => 'rsi', 'Rhsim12G0022900' => 'rsi', 'Rhsim12G0177500' => 'rsi', 'Rhsim12G0177700' => 'rsi', 'Sabra03G0122600' => 'sbr', 'Sabra05G0097400' => 'sbr', 'Sabra12G0064100' => 'sbr', 'Sabra15G0121300' => 'sbr', 'SalBow2G0642' => 'sbo', 'SalBow5G2667' => 'sbo', 'SalBow5G4873' => 'sbo', 'SalBow8G2395' => 'sbo', 'Sc03g0003290' => 'sci', 'Sc10g0010130' => 'sci', 'Sc22g0003650' => 'sci', 'Sed0001603' => 'sed', 'Sed0004259' => 'sed', 'Sed0006789' => 'sed', 'Sed0011838' => 'sed', 'Sed0012964' => 'sed', 'Sed0016383' => 'sed', 'Sed0019010' => 'sed', 'Sed0020188' => 'sed', 'SEGI_04702' => 'sgi', 'SEGI_17231' => 'sgi', 'SEGI_18877' => 'sgi', 'SEGI_25196' => 'sgi', 'SEGI_25515' => 'sgi', 'SEGI_28445' => 'sgi', 'SEGI_37452' => 'sgi', 'SGA_v2.0_scaffold188G40336' => 'sas', 'SGA_v2.0_scaffold228G43247' => 'sas', 'SGA_v2.0_scaffold280G46853' => 'sas', 'SGA_v2.0_scaffold34G13808' => 'sas', 'SGA_v2.0_scaffold40G15576' => 'sas', 'SGA_v2.0_scaffold611G53188' => 'sas', 'SGA_v2.0_scaffold78G25461' => 'sas', 'SGA_v2.0_scaffold90G27888' => 'sas', 'SHI08601' => 'shi', 'SHI08606' => 'shi', 'SHI17117' => 'shi', 'SHI17119' => 'shi', 'SMO118G0201' => 'smo', 'SMO169G0247' => 'smo', 'SMO176G0006' => 'smo', 'SMO176G0015' => 'smo', 'SMO202G0006' => 'smo', 'SMO240G0050' => 'smo', 'SMO286G0009' => 'smo', 'SMO338G0033' => 'smo', 'SMO356G0533' => 'smo', 'SMO364G0382' => 'smo', 'SMO367G0166' => 'smo', 'SMO367G1098' => 'smo', 'Solyc01g009920.3' => 'sly', 'Solyc01g099300.3' => 'sly', 'Solyc02g084700.3' => 'sly', 'Solyc03g097520.3' => 'sly', 'Solyc06g071580.3' => 'sly', 'Solyc10g081760.3' => 'sly', 'Sopen01g005480' => 'spe', 'Sopen01g042850' => 'spe', 'Sopen02g029370' => 'spe', 'Sopen03g028280' => 'spe', 'Sopen06g027870' => 'spe', 'Sopen10g032270' => 'spe', 'Sp5g18180' => 'spa', 'Sp6g12880' => 'spa', 'Sp6g30850' => 'spa', 'Sp7g22960' => 'spa', 'Sp7g34010' => 'spa', 'SpUn1326_0010' => 'spa', 'TAR371G0242' => 'tar', 'TAR622G0638' => 'tar', 'TAR628G1548' => 'tar', 'TAR629G1079' => 'tar', 'TAR629G3413' => 'tar', 'THA.LOC104804249' => 'tha', 'THA.LOC104808315' => 'tha', 'THA.LOC104809238' => 'tha', 'THA.LOC104825484' => 'tha', 'Thecc.01G025500' => 'tca', 'Thecc.03G015800' => 'tca', 'Thecc.03G018000' => 'tca', 'Thecc.03G134800' => 'tca', 'Thecc.04G014700' => 'tca', 'Thhalv10006991m.g' => 'esa', 'Thhalv10012707m.g' => 'esa', 'Thhalv10015739m.g' => 'esa', 'Thhalv10024553m.g' => 'esa', 'Thhalv10024673m.g' => 'esa', 'Thhalv10029187m.g' => 'esa', 'TPR.G12971' => 'tpr', 'TPR.G29396' => 'tpr', 'TPR.G33376' => 'tpr', 'TPR.G35508' => 'tpr', 'TPR.G35516' => 'tpr', 'TPR.G37317' => 'tpr', 'TPR.G37389' => 'tpr', 'TPR.G37523' => 'tpr', 'TPR.G559' => 'tpr', 'TWI14G0070' => 'twi', 'TWI14G0729' => 'twi', 'TWI18G0596' => 'twi', 'TWI39G0780' => 'twi', 'TWI39G0850' => 'twi', 'TWI73G1052' => 'twi', 'unitig_52.g17485' => 'ugi', 'unitig_61.g26355' => 'ugi', 'vmacro01040' => 'vma', 'vmacro16731' => 'vma', 'vmacro18270' => 'vma', 'vmacro19142' => 'vma', 'vmacro19407' => 'vma', 'vmacro19408' => 'vma', 'vmacro21899' => 'vma', 'vmacro21900' => 'vma', 'vmacro21901' => 'vma', 'VMungo0251G0490' => 'vmu', 'VMungo0251G1748' => 'vmu', 'VMungo1309G0421' => 'vmu', 'Zm00001eb086500' => 'zma', 'Zm00001eb150680' => 'zma', 'Zm00001eb162330' => 'zma', 'Zm00001eb203130' => 'zma', 'Zm00001eb369480' => 'zma', 'Zm00001eb382340' => 'zma', 'Zm00001eb416360' => 'zma' ) $gf_id = 'HOM05D000902' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000902' ) $data_identifier = 'HOM05D000902' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 13, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 10, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 6, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 9, 'hma' => (int) 12, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 4, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 6, 'ppa' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 6, 'rch' => (int) 9, 'rsi' => (int) 9, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 12, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 3, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416360' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000902', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '663', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02470' => 'bna', 'A01p16260' => 'bna', 'A02p01680' => 'bna', 'A03p16600' => 'bna', 'A03p55660' => 'bna', 'A03p64160' => 'bna', 'A03p64170' => 'bna', 'A08p31900' => 'bna', 'A09p59530' => 'bna', 'A10p08230' => 'bna', 'A10p25090' => 'bna', 'Aa31LG3G7100' => 'aar', 'Aa31LG3G7110' => 'aar', 'Aa31LG6G13160' => 'aar', 'Aa31LG7G10770' => 'aar', 'Aa31LG7G3830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2723' => 'aag', 'Actinidia08045' => 'ach', 'Actinidia08888' => 'ach', 'Actinidia18333' => 'ach', 'Actinidia19334' => 'ach', 'Actinidia25552' => 'ach', 'Actinidia26089' => 'ach', 'Actinidia30615' => 'ach', 'Actinidia30616' => 'ach', 'Actinidia33083' => 'ach', 'Actinidia35762' => 'ach', 'Ah.02g110620' => 'amhyb', 'Ah.11g046390' => 'amhyb', 'AL1G31670' => 'aly', 'AL6G23730' => 'aly', 'AL7G14740' => 'aly', 'AL7G14750' => 'aly', 'AL7G14760' => 'aly', 'AL7G28220' => 'aly', 'AL8G24940' => 'aly', 'Aqoxy3G01665' => 'aox', 'Aqoxy3G02853' => 'aox', 'Aqoxy5G01513' => 'aox', 'Aqoxy5G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8SKA4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ75LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKDA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0LJZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7REX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZP4YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWX7I5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2QKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS0L9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPCD8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q161UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC7XCF' => 'arhy', 'AT1G19100' => 'ath', 'AT4G24970' => 'ath', 'AT4G36270' => 'ath', 'AT4G36280' => 'ath', 'AT4G36290' => 'ath', 'AT5G13130' => 'ath', 'AT5G50780' => 'ath', 'ATR0582G266' => 'atr', 'ATR0661G195' => 'atr', 'ATR1152G031' => 'atr', 'Atru.chr11.2382' => 'acertr', 'Atru.chr12.2337' => 'acertr', 'Atru.chr3.744' => 'acertr', 'Atru.chr6.1870' => 'acertr', 'Atru.chr9.2515' => 'acertr', 'AUR62004120' => 'cqu', 'AUR62005667' => 'cqu', 'AUR62007634' => 'cqu', 'AUR62008186' => 'cqu', 'AUR62008187' => 'cqu', 'AUR62008188' => 'cqu', 'AUR62027954' => 'cqu', 'AUR62028766' => 'cqu', 'AUR62028767' => 'cqu', 'AUR62028768' => 'cqu', 'AUR62028886' => 'cqu', 'AUR62029563' => 'cqu', 'AUR62038832' => 'cqu', 'BcaB01g04149' => 'bca', 'BcaB03g12940' => 'bca', 'BcaB03g13090' => 'bca', 'BcaB03g14466' => 'bca', 'BcaB05g24035' => 'bca', 'BcaC01g06050' => 'bca', 'BcaC04g19148' => 'bca', 'BcaC04g20761' => 'bca', 'BcaC06g32845' => 'bca', 'BcaC07g41274' => 'bca', 'BcaC09g50827' => 'bca', 'BcaNung00741' => 'bca', 'BcaNung00742' => 'bca', 'BcaNung01859' => 'bca', 'BcaNung03985' => 'bca', 'BcaNung03989' => 'bca', 'BcaNung05661' => 'bca', 'BolC1t00257H' => 'bol', 'BolC1t01956H' => 'bol', 'BolC2t06534H' => 'bol', 'BolC3t14334H' => 'bol', 'BolC5t30451H' => 'bol', 'BolC7t45880H' => 'bol', 'BolC7t46586H' => 'bol', 'BolC8t49301H' => 'bol', 'BolC8t51837H' => 'bol', 'BolC9t56822H' => 'bol', 'BolC9t59235H' => 'bol', 'BraA01t00234Z' => 'bra', 'BraA01t01563Z' => 'bra', 'BraA02t05147Z' => 'bra', 'BraA03t10947Z' => 'bra', 'BraA03t14633Z' => 'bra', 'BraA08t35112Z' => 'bra', 'BraA09t41330Z' => 'bra', 'BraA10t44570Z' => 'bra', 'C01p02670' => 'bna', 'C01p20260' => 'bna', 'C02p05890' => 'bna', 'C03p19530' => 'bna', 'C05p17470' => 'bna', 'C07p53900' => 'bna', 'C07p61630' => 'bna', 'C08p16800' => 'bna', 'C08p42810' => 'bna', 'C09p39480' => 'bna', 'C09p63980' => 'bna', 'CAN.G1001.7' => 'can', 'CAN.G1034.55' => 'can', 'CAN.G143.7' => 'can', 'CAN.G3340.1' => 'can', 'CAN.G358.19' => 'can', 'CAN.G373.2' => 'can', 'CAN.G674.16' => 'can', 'CAN.G674.17' => 'can', 'CAN.G674.18' => 'can', 'CAN.G732.2' => 'can', 'CAN.G732.3' => 'can', 'CAN.G993.39' => 'can', 'CANSAT01G2052' => 'cansat', 'CANSAT80G0070' => 'cansat', 'CANSAT80G0483' => 'cansat', 'CANSAT80G0625' => 'cansat', 'CARHR019690' => 'chi', 'CARHR080280' => 'chi', 'CARHR152750' => 'chi', 'CARHR152760' => 'chi', 'CARHR152770' => 'chi', 'CARHR200340' => 'chi', 'CARHR232370' => 'chi', 'CARHR244670' => 'chi', 'CARHR244680' => 'chi', 'CARHR257520' => 'chi', 'Carub.0001s1872' => 'cru', 'Carub.0006s1130' => 'cru', 'Carub.0007s0396' => 'cru', 'Carub.0007s0397' => 'cru', 'Carub.0007s1608' => 'cru', 'Carub.0008s1068' => 'cru', 'Carub.0008s1077' => 'cru', 'Ca_16158_v3' => 'car', 'Ca_17571_v3' => 'car', 'Ca_21936_v3' => 'car', 'Ca_22350_v3' => 'car', 'CBR_g22445' => 'cbr', 'CBR_g26290' => 'cbr', 'Cc04_g09610' => 'ccan', 'Cc04_g12280' => 'ccan', 'Cc07_g10230' => 'ccan', 'CDE02G0093' => 'cde', 'CDE02G0701' => 'cde', 'CDE04G1050' => 'cde', 'CDE05G1833' => 'cde', 'CDE05G3058' => 'cde', 'CDE05G3380' => 'cde', 'CDE06G0536' => 'cde', 'Cfa006923' => 'cfa', 'Cfa009402' => 'cfa', 'Cfa018751' => 'cfa', 'Cfa019164' => 'cfa', 'Cfa022935' => 'cfa', 'Ciclev10019081m.g' => 'ccl', 'Ciclev10025076m.g' => 'ccl', 'Ciclev10030712m.g' => 'ccl', 'Ciclev10033760m.g' => 'ccl', 'CiPaw.05G105600' => 'cil', 'CiPaw.08G136700' => 'cil', 'CiPaw.11G003900' => 'cil', 'CiPaw.11G023700' => 'cil', 'CiPaw.12G003700' => 'cil', 'ClCG06G017100' => 'cla', 'ClCG06G018110' => 'cla', 'ClCG07G008800' => 'cla', 'ClCG07G015330' => 'cla', 'COL.COLO4_13698' => 'col', 'COL.COLO4_16659' => 'col', 'COL.COLO4_21986' => 'col', 'COL.COLO4_24049' => 'col', 'COL.COLO4_29061' => 'col', 'COL.COLO4_29075' => 'col', 'COL.COLO4_30094' => 'col', 'Cpa.g.c33689' => 'cpa', 'Cpa.g.sc108.39' => 'cpa', 'Cpa.g.sc108.41' => 'cpa', 'Cpa.g.sc1163.1' => 'cpa', 'Cpa.g.sc4.155' => 'cpa', 'Cpa.g.sc6.194' => 'cpa', 'CsaV3_1G000340' => 'csa', 'CsaV3_1G001400' => 'csa', 'CsaV3_4G002220' => 'csa', 'CsaV3_4G005370' => 'csa', 'CSS0007487' => 'camsi', 'CSS0008066' => 'camsi', 'CSS0009120' => 'camsi', 'CSS0015512' => 'camsi', 'CSS0022409' => 'camsi', 'CSS0025358' => 'camsi', 'CSS0044547' => 'camsi', 'DCAR_013057' => 'dca', 'DCAR_015058' => 'dca', 'DCAR_016027' => 'dca', 'DCAR_017327' => 'dca', 'DCAR_020743' => 'dca', 'DCAR_026157' => 'dca', 'DCAR_032339' => 'dca', 'DCAR_032340' => 'dca', 'Dinv11200' => 'din', 'Dinv11201' => 'din', 'Dinv20631' => 'din', 'Dinv23182' => 'din', 'Dinv33466' => 'din', 'Dinv33583' => 'din', 'Dinv38565' => 'din', 'Duzib068G0200' => 'dzi', 'Duzib147G0132' => 'dzi', 'Duzib147G0635' => 'dzi', 'Duzib205G1670' => 'dzi', 'Duzib251G0606' => 'dzi', 'ECA232G3336' => 'eca', 'ECA232G3763' => 'eca', 'ECA232G4845' => 'eca', 'ECA234G1607' => 'eca', 'ECA246G0932' => 'eca', 'ECA247G0781' => 'eca', 'ECA247G1932' => 'eca', 'ECA247G2079' => 'eca', 'ECA247G3338' => 'eca', 'ECA247G4115' => 'eca', 'EL10Ac3g06552' => 'bvu', 'EL10Ac5g10721' => 'bvu', 'EL10Ac5g10722' => 'bvu', 'EL10Ac5g10723' => 'bvu', 'EL10Ac5g11361' => 'bvu', 'EL10Ac6g13553' => 'bvu', 'EL10As8g23872' => 'bvu', 'Eucgr.B00250' => 'egr', 'Eucgr.B00251' => 'egr', 'Eucgr.B03533' => 'egr', 'Eucgr.I02381' => 'egr', 'Eucgr.K02700' => 'egr', 'FAN02G0174' => 'fan', 'FAN02G3146' => 'fan', 'FAN04G1672' => 'fan', 'FAN04G2273' => 'fan', 'FAN05G2791' => 'fan', 'FAN05G4035' => 'fan', 'FAN07G0834' => 'fan', 'FAN08G1198' => 'fan', 'FAN09G4182' => 'fan', 'FAN12G0496' => 'fan', 'FAN13G1027' => 'fan', 'FAN13G2951' => 'fan', 'FAN14G0705' => 'fan', 'FAN14G0720' => 'fan', 'FAN17G0201' => 'fan', 'FAN17G2665' => 'fan', 'FAN18G1456' => 'fan', 'FAN18G1525' => 'fan', 'FAN18G3500' => 'fan', 'FAN28G2670' => 'fan', 'FvH4_1g12391' => 'fve', 'FvH4_4g23220' => 'fve', 'FvH4_5g08810' => 'fve', 'FvH4_5g28960' => 'fve', 'FvH4_6g42820' => 'fve', 'FvH4_6g51110' => 'fve', 'Glyma.02G051802' => 'gma', 'Glyma.04G185300' => 'gma', 'Glyma.05G202900' => 'gma', 'Glyma.08G010300' => 'gma', 'Glyma.16G131900' => 'gma', 'Glyma.17G087900' => 'gma', 'Gohir.A07G048600' => 'ghi', 'Gohir.A11G179000' => 'ghi', 'Gohir.A12G140900' => 'ghi', 'Gohir.A12G140950' => 'ghi', 'Gohir.A12G191700' => 'ghi', 'Gohir.A13G086300' => 'ghi', 'Gohir.D07G052900' => 'ghi', 'Gohir.D11G186600' => 'ghi', 'Gohir.D12G145575' => 'ghi', 'Gohir.D12G145650' => 'ghi', 'Gohir.D12G145725' => 'ghi', 'Gohir.D12G194050' => 'ghi', 'Gohir.D13G091800' => 'ghi', 'Gorai.001G055900' => 'gra', 'Gorai.007G198400' => 'gra', 'Gorai.008G157000' => 'gra', 'Gorai.008G157100' => 'gra', 'Gorai.008G208700' => 'gra', 'Gorai.010G138700' => 'gra', 'GSVIVG01000977001' => 'vvi', 'GSVIVG01007708001' => 'vvi', 'GSVIVG01008587001' => 'vvi', 'GSVIVG01018849001' => 'vvi', 'GSVIVG01032432001' => 'vvi', 'HanXRQChr02g0034131' => 'han', 'HanXRQChr02g0035981' => 'han', 'HanXRQChr02g0035991' => 'han', 'HanXRQChr05g0155611' => 'han', 'HanXRQChr05g0155621' => 'han', 'HanXRQChr08g0236501' => 'han', 'HanXRQChr09g0261321' => 'han', 'HanXRQChr09g0272081' => 'han', 'HanXRQChr10g0310741' => 'han', 'HanXRQChr11g0325591' => 'han', 'HanXRQChr12g0385691' => 'han', 'HanXRQChr13g0387801' => 'han', 'HanXRQChr15g0463011' => 'han', 'Haze_03826' => 'cav', 'Haze_03827' => 'cav', 'Haze_07183' => 'cav', 'Haze_07537' => 'cav', 'Haze_07539' => 'cav', 'Haze_12461' => 'cav', 'Haze_16115' => 'cav', 'Haze_16808' => 'cav', 'Haze_18531' => 'cav', 'Hma1.2p1_0046F.1_g026700' => 'hma', 'Hma1.2p1_0046F.1_g026710' => 'hma', 'Hma1.2p1_0168F.1_g074340' => 'hma', 'Hma1.2p1_0266F.1_g107030' => 'hma', 'Hma1.2p1_0266F.1_g107060' => 'hma', 'Hma1.2p1_0275F.1_g110510' => 'hma', 'Hma1.2p1_0592F.1_g185490' => 'hma', 'Hma1.2p1_0592F.1_g185500' => 'hma', 'Hma1.2p1_0592F.1_g185510' => 'hma', 'Hma1.2p1_0592F.1_g185520' => 'hma', 'Hma1.2p1_0592F.1_g185530' => 'hma', 'Hma1.2p1_0818F.1_g223450' => 'hma', 'HPP92_009708' => 'vpl', 'HPP92_009793' => 'vpl', 'HPP92_009796' => 'vpl', 'HPP92_009797' => 'vpl', 'HPP92_014940' => 'vpl', 'HPP92_014988' => 'vpl', 'Hund02463' => 'sun', 'Hund02760' => 'sun', 'Hund05071' => 'sun', 'Hund10108' => 'sun', 'Hund11204' => 'sun', 'Hund14016' => 'sun', 'Hund16464' => 'sun', 'Lalb_Chr09g0333391' => 'lal', 'Lalb_Chr11g0070461' => 'lal', 'Lalb_Chr12g0201671' => 'lal', 'Lalb_Chr13g0297161' => 'lal', 'Lj1g0002823' => 'lja', 'Lj3C1074T6' => 'lonja', 'Lj4A212T28' => 'lonja', 'Lj4g0005516' => 'lja', 'Lj4g0013705' => 'lja', 'Lj4g0027865' => 'lja', 'Lj5C92G16' => 'lonja', 'Lj5C92T12' => 'lonja', 'Lj7C596T3' => 'lonja', 'Lj9A446G59' => 'lonja', 'Lj9A482G21' => 'lonja', 'Lsat_1_v5_gn_1_28261' => 'lsa', 'Lsat_1_v5_gn_1_28281' => 'lsa', 'Lsat_1_v5_gn_1_32721' => 'lsa', 'Lsat_1_v5_gn_4_151760' => 'lsa', 'Lsat_1_v5_gn_4_2120' => 'lsa', 'Lsat_1_v5_gn_4_75761' => 'lsa', 'Lsat_1_v5_gn_5_10920' => 'lsa', 'Manes.02G099900' => 'mes', 'Manes.11G096200' => 'mes', 'Manes.12G007200' => 'mes', 'Manes.14G048300' => 'mes', 'Manes.17G114700' => 'mes', 'Mapoly0002s0070' => 'mpo', 'Mapoly0029s0099' => 'mpo', 'MBI07_g24742_MAGBIO' => 'mbi', 'MBI10_g27988_MAGBIO' => 'mbi', 'MBI11_g13057_MAGBIO' => 'mbi', 'MD02G1137200' => 'mdo', 'MD06G1137200' => 'mdo', 'MD07G1122300' => 'mdo', 'MD09G1078200' => 'mdo', 'MD13G1123700' => 'mdo', 'MD14G1151900' => 'mdo', 'MD17G1030900' => 'mdo', 'MD17G1068200' => 'mdo', 'MD17G1068600' => 'mdo', 'Medtr3g077540' => 'mtr', 'Medtr4g105530' => 'mtr', 'Medtr8g076580' => 'mtr', 'Medtr8g076590' => 'mtr', 'Medtr8g096410' => 'mtr', 'MELO3C016411.2' => 'cme', 'MELO3C017780.2' => 'cme', 'MELO3C022560.2' => 'cme', 'MELO3C026187.2' => 'cme', 'MELO3C026286.2' => 'cme', 'MELO3C032854.2' => 'cme', 'Migut.H02495' => 'egut', 'Migut.I00561' => 'egut', 'Migut.K01015' => 'egut', 'Migut.K01016' => 'egut', 'Migut.L00743' => 'egut', 'Migut.L00744' => 'egut', 'Migut.L00746' => 'egut', 'Migut.L00798' => 'egut', 'Migut.L00799' => 'egut', 'Migut.N02096' => 'egut', 'MSTRG.11259' => 'ama', 'MSTRG.23142' => 'ama', 'MSTRG.2499' => 'ama', 'Nitab4.5_0000003g0730' => 'nta', 'Nitab4.5_0000137g0020' => 'nta', 'Nitab4.5_0000721g0210' => 'nta', 'Nitab4.5_0000723g0050' => 'nta', 'Nitab4.5_0000913g0070' => 'nta', 'Nitab4.5_0001332g0040' => 'nta', 'Nitab4.5_0001771g0050' => 'nta', 'Nitab4.5_0001918g0050' => 'nta', 'Nitab4.5_0002686g0030' => 'nta', 'Nitab4.5_0003156g0020' => 'nta', 'Nitab4.5_0003383g0040' => 'nta', 'Nitab4.5_0003918g0010' => 'nta', 'Nitab4.5_0006760g0010' => 'nta', 'Nn1g05981' => 'nnu', 'Nn1g06288' => 'nnu', 'Nn3g16371' => 'nnu', 'Nn3g16786' => 'nnu', 'Nn4g22232' => 'nnu', 'Oeu005144.1' => 'oeu', 'Oeu005145.1' => 'oeu', 'Oeu011348.1' => 'oeu', 'Oeu016415.1' => 'oeu', 'Oeu023501.1' => 'oeu', 'Oeu044473.1' => 'oeu', 'Oeu048892.2' => 'oeu', 'Os01g0549200' => 'osa', 'Os02g0469300' => 'osa', 'Os04g0311100' => 'osa', 'Os06g0474900' => 'osa', 'Os10g0181700' => 'osa', 'Os11g0454800' => 'osa', 'Peaxi162Scf00037g00714' => 'pax', 'Peaxi162Scf00084g01217' => 'pax', 'Peaxi162Scf00257g00217' => 'pax', 'Peaxi162Scf00516g00215' => 'pax', 'Peaxi162Scf00689g00123' => 'pax', 'PGR044G2719' => 'pgr', 'PGR083G1360' => 'pgr', 'PGR102G2849' => 'pgr', 'PGR119G2534' => 'pgr', 'PGSC0003DMG400003538' => 'stu', 'PGSC0003DMG400028138' => 'stu', 'PGSC0003DMG400031732' => 'stu', 'PGSC0003DMG400038165' => 'stu', 'Phvul.002G284600' => 'pvu', 'Phvul.003G258200' => 'pvu', 'Phvul.009G176500' => 'pvu', 'Potri.003G167201' => 'ptr', 'Potri.005G118400' => 'ptr', 'Potri.012G089000' => 'ptr', 'Potri.012G102800' => 'ptr', 'Potri.015G079400' => 'ptr', 'Potri.015G100900' => 'ptr', 'Pp3c14_9810' => 'ppa', 'Pp3c15_10450' => 'ppa', 'Pp3c20_19150' => 'ppa', 'Pp3c23_12740' => 'ppa', 'Pp3c23_6310' => 'ppa', 'Pp3c24_3720' => 'ppa', 'Pp3c27_2580' => 'ppa', 'Pp3c9_8990' => 'ppa', 'PRCOL_00002854' => 'pco', 'Prupe.1G221200' => 'ppe', 'Prupe.3G289000' => 'ppe', 'Prupe.5G147000' => 'ppe', 'Prupe.6G157300' => 'ppe', 'Prupe.7G163400' => 'ppe', 'Psat0s2177g0040' => 'psa', 'Psat3g174760' => 'psa', 'Psat3g192160' => 'psa', 'Psat4g058520' => 'psa', 'Psat4g096840' => 'psa', 'Psat7g037320' => 'psa', 'PSO017G1274' => 'pso', 'PSO017G5166' => 'pso', 'PSO063G4558' => 'pso', 'PSO170G4458' => 'pso', 'PSO170G5005' => 'pso', 'PSO210G6156' => 'pso', 'PSO210G6635' => 'pso', 'PSO210G7397' => 'pso', 'PSO210G7700' => 'pso', 'PSO455G0035' => 'pso', 'PSO455G0180' => 'pso', 'PSO478G4515' => 'pso', 'PSO832G1305' => 'pso', 'PSO832G3489' => 'pso', 'QL02p075247' => 'qlo', 'QL03p051148' => 'qlo', 'QL05p010313' => 'qlo', 'QL06p034627' => 'qlo', 'QL10p001889' => 'qlo', 'QL10p010846' => 'qlo', 'RcHm_v2.0_Chr1g0350621' => 'rch', 'RcHm_v2.0_Chr1g0350641' => 'rch', 'RcHm_v2.0_Chr2g0092891' => 'rch', 'RcHm_v2.0_Chr2g0100251' => 'rch', 'RcHm_v2.0_Chr2g0158661' => 'rch', 'RcHm_v2.0_Chr2g0172741' => 'rch', 'RcHm_v2.0_Chr4g0429571' => 'rch', 'RcHm_v2.0_Chr5g0042471' => 'rch', 'RcHm_v2.0_Chr7g0189451' => 'rch', 'Rhsim08G0052000' => 'rsi', 'Rhsim08G0174400' => 'rsi', 'Rhsim08G0193200' => 'rsi', 'Rhsim10G0214800' => 'rsi', 'Rhsim10G0214900' => 'rsi', 'Rhsim10G0215000' => 'rsi', 'Rhsim12G0022900' => 'rsi', 'Rhsim12G0177500' => 'rsi', 'Rhsim12G0177700' => 'rsi', 'Sabra03G0122600' => 'sbr', 'Sabra05G0097400' => 'sbr', 'Sabra12G0064100' => 'sbr', 'Sabra15G0121300' => 'sbr', 'SalBow2G0642' => 'sbo', 'SalBow5G2667' => 'sbo', 'SalBow5G4873' => 'sbo', 'SalBow8G2395' => 'sbo', 'Sc03g0003290' => 'sci', 'Sc10g0010130' => 'sci', 'Sc22g0003650' => 'sci', 'Sed0001603' => 'sed', 'Sed0004259' => 'sed', 'Sed0006789' => 'sed', 'Sed0011838' => 'sed', 'Sed0012964' => 'sed', 'Sed0016383' => 'sed', 'Sed0019010' => 'sed', 'Sed0020188' => 'sed', 'SEGI_04702' => 'sgi', 'SEGI_17231' => 'sgi', 'SEGI_18877' => 'sgi', 'SEGI_25196' => 'sgi', 'SEGI_25515' => 'sgi', 'SEGI_28445' => 'sgi', 'SEGI_37452' => 'sgi', 'SGA_v2.0_scaffold188G40336' => 'sas', 'SGA_v2.0_scaffold228G43247' => 'sas', 'SGA_v2.0_scaffold280G46853' => 'sas', 'SGA_v2.0_scaffold34G13808' => 'sas', 'SGA_v2.0_scaffold40G15576' => 'sas', 'SGA_v2.0_scaffold611G53188' => 'sas', 'SGA_v2.0_scaffold78G25461' => 'sas', 'SGA_v2.0_scaffold90G27888' => 'sas', 'SHI08601' => 'shi', 'SHI08606' => 'shi', 'SHI17117' => 'shi', 'SHI17119' => 'shi', 'SMO118G0201' => 'smo', 'SMO169G0247' => 'smo', 'SMO176G0006' => 'smo', 'SMO176G0015' => 'smo', 'SMO202G0006' => 'smo', 'SMO240G0050' => 'smo', 'SMO286G0009' => 'smo', 'SMO338G0033' => 'smo', 'SMO356G0533' => 'smo', 'SMO364G0382' => 'smo', 'SMO367G0166' => 'smo', 'SMO367G1098' => 'smo', 'Solyc01g009920.3' => 'sly', 'Solyc01g099300.3' => 'sly', 'Solyc02g084700.3' => 'sly', 'Solyc03g097520.3' => 'sly', 'Solyc06g071580.3' => 'sly', 'Solyc10g081760.3' => 'sly', 'Sopen01g005480' => 'spe', 'Sopen01g042850' => 'spe', 'Sopen02g029370' => 'spe', 'Sopen03g028280' => 'spe', 'Sopen06g027870' => 'spe', 'Sopen10g032270' => 'spe', 'Sp5g18180' => 'spa', 'Sp6g12880' => 'spa', 'Sp6g30850' => 'spa', 'Sp7g22960' => 'spa', 'Sp7g34010' => 'spa', 'SpUn1326_0010' => 'spa', 'TAR371G0242' => 'tar', 'TAR622G0638' => 'tar', 'TAR628G1548' => 'tar', 'TAR629G1079' => 'tar', 'TAR629G3413' => 'tar', 'THA.LOC104804249' => 'tha', 'THA.LOC104808315' => 'tha', 'THA.LOC104809238' => 'tha', 'THA.LOC104825484' => 'tha', 'Thecc.01G025500' => 'tca', 'Thecc.03G015800' => 'tca', 'Thecc.03G018000' => 'tca', 'Thecc.03G134800' => 'tca', 'Thecc.04G014700' => 'tca', 'Thhalv10006991m.g' => 'esa', 'Thhalv10012707m.g' => 'esa', 'Thhalv10015739m.g' => 'esa', 'Thhalv10024553m.g' => 'esa', 'Thhalv10024673m.g' => 'esa', 'Thhalv10029187m.g' => 'esa', 'TPR.G12971' => 'tpr', 'TPR.G29396' => 'tpr', 'TPR.G33376' => 'tpr', 'TPR.G35508' => 'tpr', 'TPR.G35516' => 'tpr', 'TPR.G37317' => 'tpr', 'TPR.G37389' => 'tpr', 'TPR.G37523' => 'tpr', 'TPR.G559' => 'tpr', 'TWI14G0070' => 'twi', 'TWI14G0729' => 'twi', 'TWI18G0596' => 'twi', 'TWI39G0780' => 'twi', 'TWI39G0850' => 'twi', 'TWI73G1052' => 'twi', 'unitig_52.g17485' => 'ugi', 'unitig_61.g26355' => 'ugi', 'vmacro01040' => 'vma', 'vmacro16731' => 'vma', 'vmacro18270' => 'vma', 'vmacro19142' => 'vma', 'vmacro19407' => 'vma', 'vmacro19408' => 'vma', 'vmacro21899' => 'vma', 'vmacro21900' => 'vma', 'vmacro21901' => 'vma', 'VMungo0251G0490' => 'vmu', 'VMungo0251G1748' => 'vmu', 'VMungo1309G0421' => 'vmu', 'Zm00001eb086500' => 'zma', 'Zm00001eb150680' => 'zma', 'Zm00001eb162330' => 'zma', 'Zm00001eb203130' => 'zma', 'Zm00001eb369480' => 'zma', 'Zm00001eb382340' => 'zma', 'Zm00001eb416360' => 'zma' ), 'gf_id' => 'HOM05D000902', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000902' ), 'data_identifier' => 'HOM05D000902', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000902', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '663', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02470' => 'bna', 'A01p16260' => 'bna', 'A02p01680' => 'bna', 'A03p16600' => 'bna', 'A03p55660' => 'bna', 'A03p64160' => 'bna', 'A03p64170' => 'bna', 'A08p31900' => 'bna', 'A09p59530' => 'bna', 'A10p08230' => 'bna', 'A10p25090' => 'bna', 'Aa31LG3G7100' => 'aar', 'Aa31LG3G7110' => 'aar', 'Aa31LG6G13160' => 'aar', 'Aa31LG7G10770' => 'aar', 'Aa31LG7G3830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2723' => 'aag', 'Actinidia08045' => 'ach', 'Actinidia08888' => 'ach', 'Actinidia18333' => 'ach', 'Actinidia19334' => 'ach', 'Actinidia25552' => 'ach', 'Actinidia26089' => 'ach', 'Actinidia30615' => 'ach', 'Actinidia30616' => 'ach', 'Actinidia33083' => 'ach', 'Actinidia35762' => 'ach', 'Ah.02g110620' => 'amhyb', 'Ah.11g046390' => 'amhyb', 'AL1G31670' => 'aly', 'AL6G23730' => 'aly', 'AL7G14740' => 'aly', 'AL7G14750' => 'aly', 'AL7G14760' => 'aly', 'AL7G28220' => 'aly', 'AL8G24940' => 'aly', 'Aqoxy3G01665' => 'aox', 'Aqoxy3G02853' => 'aox', 'Aqoxy5G01513' => 'aox', 'Aqoxy5G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8SKA4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ75LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKDA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0LJZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7REX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZP4YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWX7I5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2QKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS0L9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPCD8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q161UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC7XCF' => 'arhy', 'AT1G19100' => 'ath', 'AT4G24970' => 'ath', 'AT4G36270' => 'ath', 'AT4G36280' => 'ath', 'AT4G36290' => 'ath', 'AT5G13130' => 'ath', 'AT5G50780' => 'ath', 'ATR0582G266' => 'atr', 'ATR0661G195' => 'atr', 'ATR1152G031' => 'atr', 'Atru.chr11.2382' => 'acertr', 'Atru.chr12.2337' => 'acertr', 'Atru.chr3.744' => 'acertr', 'Atru.chr6.1870' => 'acertr', 'Atru.chr9.2515' => 'acertr', 'AUR62004120' => 'cqu', 'AUR62005667' => 'cqu', 'AUR62007634' => 'cqu', 'AUR62008186' => 'cqu', 'AUR62008187' => 'cqu', 'AUR62008188' => 'cqu', 'AUR62027954' => 'cqu', 'AUR62028766' => 'cqu', 'AUR62028767' => 'cqu', 'AUR62028768' => 'cqu', 'AUR62028886' => 'cqu', 'AUR62029563' => 'cqu', 'AUR62038832' => 'cqu', 'BcaB01g04149' => 'bca', 'BcaB03g12940' => 'bca', 'BcaB03g13090' => 'bca', 'BcaB03g14466' => 'bca', 'BcaB05g24035' => 'bca', 'BcaC01g06050' => 'bca', 'BcaC04g19148' => 'bca', 'BcaC04g20761' => 'bca', 'BcaC06g32845' => 'bca', 'BcaC07g41274' => 'bca', 'BcaC09g50827' => 'bca', 'BcaNung00741' => 'bca', 'BcaNung00742' => 'bca', 'BcaNung01859' => 'bca', 'BcaNung03985' => 'bca', 'BcaNung03989' => 'bca', 'BcaNung05661' => 'bca', 'BolC1t00257H' => 'bol', 'BolC1t01956H' => 'bol', 'BolC2t06534H' => 'bol', 'BolC3t14334H' => 'bol', 'BolC5t30451H' => 'bol', 'BolC7t45880H' => 'bol', 'BolC7t46586H' => 'bol', 'BolC8t49301H' => 'bol', 'BolC8t51837H' => 'bol', 'BolC9t56822H' => 'bol', 'BolC9t59235H' => 'bol', 'BraA01t00234Z' => 'bra', 'BraA01t01563Z' => 'bra', 'BraA02t05147Z' => 'bra', 'BraA03t10947Z' => 'bra', 'BraA03t14633Z' => 'bra', 'BraA08t35112Z' => 'bra', 'BraA09t41330Z' => 'bra', 'BraA10t44570Z' => 'bra', 'C01p02670' => 'bna', 'C01p20260' => 'bna', 'C02p05890' => 'bna', 'C03p19530' => 'bna', 'C05p17470' => 'bna', 'C07p53900' => 'bna', 'C07p61630' => 'bna', 'C08p16800' => 'bna', 'C08p42810' => 'bna', 'C09p39480' => 'bna', 'C09p63980' => 'bna', 'CAN.G1001.7' => 'can', 'CAN.G1034.55' => 'can', 'CAN.G143.7' => 'can', 'CAN.G3340.1' => 'can', 'CAN.G358.19' => 'can', 'CAN.G373.2' => 'can', 'CAN.G674.16' => 'can', 'CAN.G674.17' => 'can', 'CAN.G674.18' => 'can', 'CAN.G732.2' => 'can', 'CAN.G732.3' => 'can', 'CAN.G993.39' => 'can', 'CANSAT01G2052' => 'cansat', 'CANSAT80G0070' => 'cansat', 'CANSAT80G0483' => 'cansat', 'CANSAT80G0625' => 'cansat', 'CARHR019690' => 'chi', 'CARHR080280' => 'chi', 'CARHR152750' => 'chi', 'CARHR152760' => 'chi', 'CARHR152770' => 'chi', 'CARHR200340' => 'chi', 'CARHR232370' => 'chi', 'CARHR244670' => 'chi', 'CARHR244680' => 'chi', 'CARHR257520' => 'chi', 'Carub.0001s1872' => 'cru', 'Carub.0006s1130' => 'cru', 'Carub.0007s0396' => 'cru', 'Carub.0007s0397' => 'cru', 'Carub.0007s1608' => 'cru', 'Carub.0008s1068' => 'cru', 'Carub.0008s1077' => 'cru', 'Ca_16158_v3' => 'car', 'Ca_17571_v3' => 'car', 'Ca_21936_v3' => 'car', 'Ca_22350_v3' => 'car', 'CBR_g22445' => 'cbr', 'CBR_g26290' => 'cbr', 'Cc04_g09610' => 'ccan', 'Cc04_g12280' => 'ccan', 'Cc07_g10230' => 'ccan', 'CDE02G0093' => 'cde', 'CDE02G0701' => 'cde', 'CDE04G1050' => 'cde', 'CDE05G1833' => 'cde', 'CDE05G3058' => 'cde', 'CDE05G3380' => 'cde', 'CDE06G0536' => 'cde', 'Cfa006923' => 'cfa', 'Cfa009402' => 'cfa', 'Cfa018751' => 'cfa', 'Cfa019164' => 'cfa', 'Cfa022935' => 'cfa', 'Ciclev10019081m.g' => 'ccl', 'Ciclev10025076m.g' => 'ccl', 'Ciclev10030712m.g' => 'ccl', 'Ciclev10033760m.g' => 'ccl', 'CiPaw.05G105600' => 'cil', 'CiPaw.08G136700' => 'cil', 'CiPaw.11G003900' => 'cil', 'CiPaw.11G023700' => 'cil', 'CiPaw.12G003700' => 'cil', 'ClCG06G017100' => 'cla', 'ClCG06G018110' => 'cla', 'ClCG07G008800' => 'cla', 'ClCG07G015330' => 'cla', 'COL.COLO4_13698' => 'col', 'COL.COLO4_16659' => 'col', 'COL.COLO4_21986' => 'col', 'COL.COLO4_24049' => 'col', 'COL.COLO4_29061' => 'col', 'COL.COLO4_29075' => 'col', 'COL.COLO4_30094' => 'col', 'Cpa.g.c33689' => 'cpa', 'Cpa.g.sc108.39' => 'cpa', 'Cpa.g.sc108.41' => 'cpa', 'Cpa.g.sc1163.1' => 'cpa', 'Cpa.g.sc4.155' => 'cpa', 'Cpa.g.sc6.194' => 'cpa', 'CsaV3_1G000340' => 'csa', 'CsaV3_1G001400' => 'csa', 'CsaV3_4G002220' => 'csa', 'CsaV3_4G005370' => 'csa', 'CSS0007487' => 'camsi', 'CSS0008066' => 'camsi', 'CSS0009120' => 'camsi', 'CSS0015512' => 'camsi', 'CSS0022409' => 'camsi', 'CSS0025358' => 'camsi', 'CSS0044547' => 'camsi', 'DCAR_013057' => 'dca', 'DCAR_015058' => 'dca', 'DCAR_016027' => 'dca', 'DCAR_017327' => 'dca', 'DCAR_020743' => 'dca', 'DCAR_026157' => 'dca', 'DCAR_032339' => 'dca', 'DCAR_032340' => 'dca', 'Dinv11200' => 'din', 'Dinv11201' => 'din', 'Dinv20631' => 'din', 'Dinv23182' => 'din', 'Dinv33466' => 'din', 'Dinv33583' => 'din', 'Dinv38565' => 'din', 'Duzib068G0200' => 'dzi', 'Duzib147G0132' => 'dzi', 'Duzib147G0635' => 'dzi', 'Duzib205G1670' => 'dzi', 'Duzib251G0606' => 'dzi', 'ECA232G3336' => 'eca', 'ECA232G3763' => 'eca', 'ECA232G4845' => 'eca', 'ECA234G1607' => 'eca', 'ECA246G0932' => 'eca', 'ECA247G0781' => 'eca', 'ECA247G1932' => 'eca', 'ECA247G2079' => 'eca', 'ECA247G3338' => 'eca', 'ECA247G4115' => 'eca', 'EL10Ac3g06552' => 'bvu', 'EL10Ac5g10721' => 'bvu', 'EL10Ac5g10722' => 'bvu', 'EL10Ac5g10723' => 'bvu', 'EL10Ac5g11361' => 'bvu', 'EL10Ac6g13553' => 'bvu', 'EL10As8g23872' => 'bvu', 'Eucgr.B00250' => 'egr', 'Eucgr.B00251' => 'egr', 'Eucgr.B03533' => 'egr', 'Eucgr.I02381' => 'egr', 'Eucgr.K02700' => 'egr', 'FAN02G0174' => 'fan', 'FAN02G3146' => 'fan', 'FAN04G1672' => 'fan', 'FAN04G2273' => 'fan', 'FAN05G2791' => 'fan', 'FAN05G4035' => 'fan', 'FAN07G0834' => 'fan', 'FAN08G1198' => 'fan', 'FAN09G4182' => 'fan', 'FAN12G0496' => 'fan', 'FAN13G1027' => 'fan', 'FAN13G2951' => 'fan', 'FAN14G0705' => 'fan', 'FAN14G0720' => 'fan', 'FAN17G0201' => 'fan', 'FAN17G2665' => 'fan', 'FAN18G1456' => 'fan', 'FAN18G1525' => 'fan', 'FAN18G3500' => 'fan', 'FAN28G2670' => 'fan', 'FvH4_1g12391' => 'fve', 'FvH4_4g23220' => 'fve', 'FvH4_5g08810' => 'fve', 'FvH4_5g28960' => 'fve', 'FvH4_6g42820' => 'fve', 'FvH4_6g51110' => 'fve', 'Glyma.02G051802' => 'gma', 'Glyma.04G185300' => 'gma', 'Glyma.05G202900' => 'gma', 'Glyma.08G010300' => 'gma', 'Glyma.16G131900' => 'gma', 'Glyma.17G087900' => 'gma', 'Gohir.A07G048600' => 'ghi', 'Gohir.A11G179000' => 'ghi', 'Gohir.A12G140900' => 'ghi', 'Gohir.A12G140950' => 'ghi', 'Gohir.A12G191700' => 'ghi', 'Gohir.A13G086300' => 'ghi', 'Gohir.D07G052900' => 'ghi', 'Gohir.D11G186600' => 'ghi', 'Gohir.D12G145575' => 'ghi', 'Gohir.D12G145650' => 'ghi', 'Gohir.D12G145725' => 'ghi', 'Gohir.D12G194050' => 'ghi', 'Gohir.D13G091800' => 'ghi', 'Gorai.001G055900' => 'gra', 'Gorai.007G198400' => 'gra', 'Gorai.008G157000' => 'gra', 'Gorai.008G157100' => 'gra', 'Gorai.008G208700' => 'gra', 'Gorai.010G138700' => 'gra', 'GSVIVG01000977001' => 'vvi', 'GSVIVG01007708001' => 'vvi', 'GSVIVG01008587001' => 'vvi', 'GSVIVG01018849001' => 'vvi', 'GSVIVG01032432001' => 'vvi', 'HanXRQChr02g0034131' => 'han', 'HanXRQChr02g0035981' => 'han', 'HanXRQChr02g0035991' => 'han', 'HanXRQChr05g0155611' => 'han', 'HanXRQChr05g0155621' => 'han', 'HanXRQChr08g0236501' => 'han', 'HanXRQChr09g0261321' => 'han', 'HanXRQChr09g0272081' => 'han', 'HanXRQChr10g0310741' => 'han', 'HanXRQChr11g0325591' => 'han', 'HanXRQChr12g0385691' => 'han', 'HanXRQChr13g0387801' => 'han', 'HanXRQChr15g0463011' => 'han', 'Haze_03826' => 'cav', 'Haze_03827' => 'cav', 'Haze_07183' => 'cav', 'Haze_07537' => 'cav', 'Haze_07539' => 'cav', 'Haze_12461' => 'cav', 'Haze_16115' => 'cav', 'Haze_16808' => 'cav', 'Haze_18531' => 'cav', 'Hma1.2p1_0046F.1_g026700' => 'hma', 'Hma1.2p1_0046F.1_g026710' => 'hma', 'Hma1.2p1_0168F.1_g074340' => 'hma', 'Hma1.2p1_0266F.1_g107030' => 'hma', 'Hma1.2p1_0266F.1_g107060' => 'hma', 'Hma1.2p1_0275F.1_g110510' => 'hma', 'Hma1.2p1_0592F.1_g185490' => 'hma', 'Hma1.2p1_0592F.1_g185500' => 'hma', 'Hma1.2p1_0592F.1_g185510' => 'hma', 'Hma1.2p1_0592F.1_g185520' => 'hma', 'Hma1.2p1_0592F.1_g185530' => 'hma', 'Hma1.2p1_0818F.1_g223450' => 'hma', 'HPP92_009708' => 'vpl', 'HPP92_009793' => 'vpl', 'HPP92_009796' => 'vpl', 'HPP92_009797' => 'vpl', 'HPP92_014940' => 'vpl', 'HPP92_014988' => 'vpl', 'Hund02463' => 'sun', 'Hund02760' => 'sun', 'Hund05071' => 'sun', 'Hund10108' => 'sun', 'Hund11204' => 'sun', 'Hund14016' => 'sun', 'Hund16464' => 'sun', 'Lalb_Chr09g0333391' => 'lal', 'Lalb_Chr11g0070461' => 'lal', 'Lalb_Chr12g0201671' => 'lal', 'Lalb_Chr13g0297161' => 'lal', 'Lj1g0002823' => 'lja', 'Lj3C1074T6' => 'lonja', 'Lj4A212T28' => 'lonja', 'Lj4g0005516' => 'lja', 'Lj4g0013705' => 'lja', 'Lj4g0027865' => 'lja', 'Lj5C92G16' => 'lonja', 'Lj5C92T12' => 'lonja', 'Lj7C596T3' => 'lonja', 'Lj9A446G59' => 'lonja', 'Lj9A482G21' => 'lonja', 'Lsat_1_v5_gn_1_28261' => 'lsa', 'Lsat_1_v5_gn_1_28281' => 'lsa', 'Lsat_1_v5_gn_1_32721' => 'lsa', 'Lsat_1_v5_gn_4_151760' => 'lsa', 'Lsat_1_v5_gn_4_2120' => 'lsa', 'Lsat_1_v5_gn_4_75761' => 'lsa', 'Lsat_1_v5_gn_5_10920' => 'lsa', 'Manes.02G099900' => 'mes', 'Manes.11G096200' => 'mes', 'Manes.12G007200' => 'mes', 'Manes.14G048300' => 'mes', 'Manes.17G114700' => 'mes', 'Mapoly0002s0070' => 'mpo', 'Mapoly0029s0099' => 'mpo', 'MBI07_g24742_MAGBIO' => 'mbi', 'MBI10_g27988_MAGBIO' => 'mbi', 'MBI11_g13057_MAGBIO' => 'mbi', 'MD02G1137200' => 'mdo', 'MD06G1137200' => 'mdo', 'MD07G1122300' => 'mdo', 'MD09G1078200' => 'mdo', 'MD13G1123700' => 'mdo', 'MD14G1151900' => 'mdo', 'MD17G1030900' => 'mdo', 'MD17G1068200' => 'mdo', 'MD17G1068600' => 'mdo', 'Medtr3g077540' => 'mtr', 'Medtr4g105530' => 'mtr', 'Medtr8g076580' => 'mtr', 'Medtr8g076590' => 'mtr', 'Medtr8g096410' => 'mtr', 'MELO3C016411.2' => 'cme', 'MELO3C017780.2' => 'cme', 'MELO3C022560.2' => 'cme', 'MELO3C026187.2' => 'cme', 'MELO3C026286.2' => 'cme', 'MELO3C032854.2' => 'cme', 'Migut.H02495' => 'egut', 'Migut.I00561' => 'egut', 'Migut.K01015' => 'egut', 'Migut.K01016' => 'egut', 'Migut.L00743' => 'egut', 'Migut.L00744' => 'egut', 'Migut.L00746' => 'egut', 'Migut.L00798' => 'egut', 'Migut.L00799' => 'egut', 'Migut.N02096' => 'egut', 'MSTRG.11259' => 'ama', 'MSTRG.23142' => 'ama', 'MSTRG.2499' => 'ama', 'Nitab4.5_0000003g0730' => 'nta', 'Nitab4.5_0000137g0020' => 'nta', 'Nitab4.5_0000721g0210' => 'nta', 'Nitab4.5_0000723g0050' => 'nta', 'Nitab4.5_0000913g0070' => 'nta', 'Nitab4.5_0001332g0040' => 'nta', 'Nitab4.5_0001771g0050' => 'nta', 'Nitab4.5_0001918g0050' => 'nta', 'Nitab4.5_0002686g0030' => 'nta', 'Nitab4.5_0003156g0020' => 'nta', 'Nitab4.5_0003383g0040' => 'nta', 'Nitab4.5_0003918g0010' => 'nta', 'Nitab4.5_0006760g0010' => 'nta', 'Nn1g05981' => 'nnu', 'Nn1g06288' => 'nnu', 'Nn3g16371' => 'nnu', 'Nn3g16786' => 'nnu', 'Nn4g22232' => 'nnu', 'Oeu005144.1' => 'oeu', 'Oeu005145.1' => 'oeu', 'Oeu011348.1' => 'oeu', 'Oeu016415.1' => 'oeu', 'Oeu023501.1' => 'oeu', 'Oeu044473.1' => 'oeu', 'Oeu048892.2' => 'oeu', 'Os01g0549200' => 'osa', 'Os02g0469300' => 'osa', 'Os04g0311100' => 'osa', 'Os06g0474900' => 'osa', 'Os10g0181700' => 'osa', 'Os11g0454800' => 'osa', 'Peaxi162Scf00037g00714' => 'pax', 'Peaxi162Scf00084g01217' => 'pax', 'Peaxi162Scf00257g00217' => 'pax', 'Peaxi162Scf00516g00215' => 'pax', 'Peaxi162Scf00689g00123' => 'pax', 'PGR044G2719' => 'pgr', 'PGR083G1360' => 'pgr', 'PGR102G2849' => 'pgr', 'PGR119G2534' => 'pgr', 'PGSC0003DMG400003538' => 'stu', 'PGSC0003DMG400028138' => 'stu', 'PGSC0003DMG400031732' => 'stu', 'PGSC0003DMG400038165' => 'stu', 'Phvul.002G284600' => 'pvu', 'Phvul.003G258200' => 'pvu', 'Phvul.009G176500' => 'pvu', 'Potri.003G167201' => 'ptr', 'Potri.005G118400' => 'ptr', 'Potri.012G089000' => 'ptr', 'Potri.012G102800' => 'ptr', 'Potri.015G079400' => 'ptr', 'Potri.015G100900' => 'ptr', 'Pp3c14_9810' => 'ppa', 'Pp3c15_10450' => 'ppa', 'Pp3c20_19150' => 'ppa', 'Pp3c23_12740' => 'ppa', 'Pp3c23_6310' => 'ppa', 'Pp3c24_3720' => 'ppa', 'Pp3c27_2580' => 'ppa', 'Pp3c9_8990' => 'ppa', 'PRCOL_00002854' => 'pco', 'Prupe.1G221200' => 'ppe', 'Prupe.3G289000' => 'ppe', 'Prupe.5G147000' => 'ppe', 'Prupe.6G157300' => 'ppe', 'Prupe.7G163400' => 'ppe', 'Psat0s2177g0040' => 'psa', 'Psat3g174760' => 'psa', 'Psat3g192160' => 'psa', 'Psat4g058520' => 'psa', 'Psat4g096840' => 'psa', 'Psat7g037320' => 'psa', 'PSO017G1274' => 'pso', 'PSO017G5166' => 'pso', 'PSO063G4558' => 'pso', 'PSO170G4458' => 'pso', 'PSO170G5005' => 'pso', 'PSO210G6156' => 'pso', 'PSO210G6635' => 'pso', 'PSO210G7397' => 'pso', 'PSO210G7700' => 'pso', 'PSO455G0035' => 'pso', 'PSO455G0180' => 'pso', 'PSO478G4515' => 'pso', 'PSO832G1305' => 'pso', 'PSO832G3489' => 'pso', 'QL02p075247' => 'qlo', 'QL03p051148' => 'qlo', 'QL05p010313' => 'qlo', 'QL06p034627' => 'qlo', 'QL10p001889' => 'qlo', 'QL10p010846' => 'qlo', 'RcHm_v2.0_Chr1g0350621' => 'rch', 'RcHm_v2.0_Chr1g0350641' => 'rch', 'RcHm_v2.0_Chr2g0092891' => 'rch', 'RcHm_v2.0_Chr2g0100251' => 'rch', 'RcHm_v2.0_Chr2g0158661' => 'rch', 'RcHm_v2.0_Chr2g0172741' => 'rch', 'RcHm_v2.0_Chr4g0429571' => 'rch', 'RcHm_v2.0_Chr5g0042471' => 'rch', 'RcHm_v2.0_Chr7g0189451' => 'rch', 'Rhsim08G0052000' => 'rsi', 'Rhsim08G0174400' => 'rsi', 'Rhsim08G0193200' => 'rsi', 'Rhsim10G0214800' => 'rsi', 'Rhsim10G0214900' => 'rsi', 'Rhsim10G0215000' => 'rsi', 'Rhsim12G0022900' => 'rsi', 'Rhsim12G0177500' => 'rsi', 'Rhsim12G0177700' => 'rsi', 'Sabra03G0122600' => 'sbr', 'Sabra05G0097400' => 'sbr', 'Sabra12G0064100' => 'sbr', 'Sabra15G0121300' => 'sbr', 'SalBow2G0642' => 'sbo', 'SalBow5G2667' => 'sbo', 'SalBow5G4873' => 'sbo', 'SalBow8G2395' => 'sbo', 'Sc03g0003290' => 'sci', 'Sc10g0010130' => 'sci', 'Sc22g0003650' => 'sci', 'Sed0001603' => 'sed', 'Sed0004259' => 'sed', 'Sed0006789' => 'sed', 'Sed0011838' => 'sed', 'Sed0012964' => 'sed', 'Sed0016383' => 'sed', 'Sed0019010' => 'sed', 'Sed0020188' => 'sed', 'SEGI_04702' => 'sgi', 'SEGI_17231' => 'sgi', 'SEGI_18877' => 'sgi', 'SEGI_25196' => 'sgi', 'SEGI_25515' => 'sgi', 'SEGI_28445' => 'sgi', 'SEGI_37452' => 'sgi', 'SGA_v2.0_scaffold188G40336' => 'sas', 'SGA_v2.0_scaffold228G43247' => 'sas', 'SGA_v2.0_scaffold280G46853' => 'sas', 'SGA_v2.0_scaffold34G13808' => 'sas', 'SGA_v2.0_scaffold40G15576' => 'sas', 'SGA_v2.0_scaffold611G53188' => 'sas', 'SGA_v2.0_scaffold78G25461' => 'sas', 'SGA_v2.0_scaffold90G27888' => 'sas', 'SHI08601' => 'shi', 'SHI08606' => 'shi', 'SHI17117' => 'shi', 'SHI17119' => 'shi', 'SMO118G0201' => 'smo', 'SMO169G0247' => 'smo', 'SMO176G0006' => 'smo', 'SMO176G0015' => 'smo', 'SMO202G0006' => 'smo', 'SMO240G0050' => 'smo', 'SMO286G0009' => 'smo', 'SMO338G0033' => 'smo', 'SMO356G0533' => 'smo', 'SMO364G0382' => 'smo', 'SMO367G0166' => 'smo', 'SMO367G1098' => 'smo', 'Solyc01g009920.3' => 'sly', 'Solyc01g099300.3' => 'sly', 'Solyc02g084700.3' => 'sly', 'Solyc03g097520.3' => 'sly', 'Solyc06g071580.3' => 'sly', 'Solyc10g081760.3' => 'sly', 'Sopen01g005480' => 'spe', 'Sopen01g042850' => 'spe', 'Sopen02g029370' => 'spe', 'Sopen03g028280' => 'spe', 'Sopen06g027870' => 'spe', 'Sopen10g032270' => 'spe', 'Sp5g18180' => 'spa', 'Sp6g12880' => 'spa', 'Sp6g30850' => 'spa', 'Sp7g22960' => 'spa', 'Sp7g34010' => 'spa', 'SpUn1326_0010' => 'spa', 'TAR371G0242' => 'tar', 'TAR622G0638' => 'tar', 'TAR628G1548' => 'tar', 'TAR629G1079' => 'tar', 'TAR629G3413' => 'tar', 'THA.LOC104804249' => 'tha', 'THA.LOC104808315' => 'tha', 'THA.LOC104809238' => 'tha', 'THA.LOC104825484' => 'tha', 'Thecc.01G025500' => 'tca', 'Thecc.03G015800' => 'tca', 'Thecc.03G018000' => 'tca', 'Thecc.03G134800' => 'tca', 'Thecc.04G014700' => 'tca', 'Thhalv10006991m.g' => 'esa', 'Thhalv10012707m.g' => 'esa', 'Thhalv10015739m.g' => 'esa', 'Thhalv10024553m.g' => 'esa', 'Thhalv10024673m.g' => 'esa', 'Thhalv10029187m.g' => 'esa', 'TPR.G12971' => 'tpr', 'TPR.G29396' => 'tpr', 'TPR.G33376' => 'tpr', 'TPR.G35508' => 'tpr', 'TPR.G35516' => 'tpr', 'TPR.G37317' => 'tpr', 'TPR.G37389' => 'tpr', 'TPR.G37523' => 'tpr', 'TPR.G559' => 'tpr', 'TWI14G0070' => 'twi', 'TWI14G0729' => 'twi', 'TWI18G0596' => 'twi', 'TWI39G0780' => 'twi', 'TWI39G0850' => 'twi', 'TWI73G1052' => 'twi', 'unitig_52.g17485' => 'ugi', 'unitig_61.g26355' => 'ugi', 'vmacro01040' => 'vma', 'vmacro16731' => 'vma', 'vmacro18270' => 'vma', 'vmacro19142' => 'vma', 'vmacro19407' => 'vma', 'vmacro19408' => 'vma', 'vmacro21899' => 'vma', 'vmacro21900' => 'vma', 'vmacro21901' => 'vma', 'VMungo0251G0490' => 'vmu', 'VMungo0251G1748' => 'vmu', 'VMungo1309G0421' => 'vmu', 'Zm00001eb086500' => 'zma', 'Zm00001eb150680' => 'zma', 'Zm00001eb162330' => 'zma', 'Zm00001eb203130' => 'zma', 'Zm00001eb369480' => 'zma', 'Zm00001eb382340' => 'zma', 'Zm00001eb416360' => 'zma' ) $gf_id = 'HOM05D000902' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000902' ) $data_identifier = 'HOM05D000902' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 13, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 10, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 6, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 9, 'hma' => (int) 12, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 4, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 6, 'ppa' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 6, 'rch' => (int) 9, 'rsi' => (int) 9, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 12, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 3, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416360' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000902', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '663', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02470' => 'bna', 'A01p16260' => 'bna', 'A02p01680' => 'bna', 'A03p16600' => 'bna', 'A03p55660' => 'bna', 'A03p64160' => 'bna', 'A03p64170' => 'bna', 'A08p31900' => 'bna', 'A09p59530' => 'bna', 'A10p08230' => 'bna', 'A10p25090' => 'bna', 'Aa31LG3G7100' => 'aar', 'Aa31LG3G7110' => 'aar', 'Aa31LG6G13160' => 'aar', 'Aa31LG7G10770' => 'aar', 'Aa31LG7G3830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2723' => 'aag', 'Actinidia08045' => 'ach', 'Actinidia08888' => 'ach', 'Actinidia18333' => 'ach', 'Actinidia19334' => 'ach', 'Actinidia25552' => 'ach', 'Actinidia26089' => 'ach', 'Actinidia30615' => 'ach', 'Actinidia30616' => 'ach', 'Actinidia33083' => 'ach', 'Actinidia35762' => 'ach', 'Ah.02g110620' => 'amhyb', 'Ah.11g046390' => 'amhyb', 'AL1G31670' => 'aly', 'AL6G23730' => 'aly', 'AL7G14740' => 'aly', 'AL7G14750' => 'aly', 'AL7G14760' => 'aly', 'AL7G28220' => 'aly', 'AL8G24940' => 'aly', 'Aqoxy3G01665' => 'aox', 'Aqoxy3G02853' => 'aox', 'Aqoxy5G01513' => 'aox', 'Aqoxy5G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8SKA4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ75LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKDA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0LJZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7REX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZP4YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWX7I5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2QKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS0L9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPCD8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q161UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC7XCF' => 'arhy', 'AT1G19100' => 'ath', 'AT4G24970' => 'ath', 'AT4G36270' => 'ath', 'AT4G36280' => 'ath', 'AT4G36290' => 'ath', 'AT5G13130' => 'ath', 'AT5G50780' => 'ath', 'ATR0582G266' => 'atr', 'ATR0661G195' => 'atr', 'ATR1152G031' => 'atr', 'Atru.chr11.2382' => 'acertr', 'Atru.chr12.2337' => 'acertr', 'Atru.chr3.744' => 'acertr', 'Atru.chr6.1870' => 'acertr', 'Atru.chr9.2515' => 'acertr', 'AUR62004120' => 'cqu', 'AUR62005667' => 'cqu', 'AUR62007634' => 'cqu', 'AUR62008186' => 'cqu', 'AUR62008187' => 'cqu', 'AUR62008188' => 'cqu', 'AUR62027954' => 'cqu', 'AUR62028766' => 'cqu', 'AUR62028767' => 'cqu', 'AUR62028768' => 'cqu', 'AUR62028886' => 'cqu', 'AUR62029563' => 'cqu', 'AUR62038832' => 'cqu', 'BcaB01g04149' => 'bca', 'BcaB03g12940' => 'bca', 'BcaB03g13090' => 'bca', 'BcaB03g14466' => 'bca', 'BcaB05g24035' => 'bca', 'BcaC01g06050' => 'bca', 'BcaC04g19148' => 'bca', 'BcaC04g20761' => 'bca', 'BcaC06g32845' => 'bca', 'BcaC07g41274' => 'bca', 'BcaC09g50827' => 'bca', 'BcaNung00741' => 'bca', 'BcaNung00742' => 'bca', 'BcaNung01859' => 'bca', 'BcaNung03985' => 'bca', 'BcaNung03989' => 'bca', 'BcaNung05661' => 'bca', 'BolC1t00257H' => 'bol', 'BolC1t01956H' => 'bol', 'BolC2t06534H' => 'bol', 'BolC3t14334H' => 'bol', 'BolC5t30451H' => 'bol', 'BolC7t45880H' => 'bol', 'BolC7t46586H' => 'bol', 'BolC8t49301H' => 'bol', 'BolC8t51837H' => 'bol', 'BolC9t56822H' => 'bol', 'BolC9t59235H' => 'bol', 'BraA01t00234Z' => 'bra', 'BraA01t01563Z' => 'bra', 'BraA02t05147Z' => 'bra', 'BraA03t10947Z' => 'bra', 'BraA03t14633Z' => 'bra', 'BraA08t35112Z' => 'bra', 'BraA09t41330Z' => 'bra', 'BraA10t44570Z' => 'bra', 'C01p02670' => 'bna', 'C01p20260' => 'bna', 'C02p05890' => 'bna', 'C03p19530' => 'bna', 'C05p17470' => 'bna', 'C07p53900' => 'bna', 'C07p61630' => 'bna', 'C08p16800' => 'bna', 'C08p42810' => 'bna', 'C09p39480' => 'bna', 'C09p63980' => 'bna', 'CAN.G1001.7' => 'can', 'CAN.G1034.55' => 'can', 'CAN.G143.7' => 'can', 'CAN.G3340.1' => 'can', 'CAN.G358.19' => 'can', 'CAN.G373.2' => 'can', 'CAN.G674.16' => 'can', 'CAN.G674.17' => 'can', 'CAN.G674.18' => 'can', 'CAN.G732.2' => 'can', 'CAN.G732.3' => 'can', 'CAN.G993.39' => 'can', 'CANSAT01G2052' => 'cansat', 'CANSAT80G0070' => 'cansat', 'CANSAT80G0483' => 'cansat', 'CANSAT80G0625' => 'cansat', 'CARHR019690' => 'chi', 'CARHR080280' => 'chi', 'CARHR152750' => 'chi', 'CARHR152760' => 'chi', 'CARHR152770' => 'chi', 'CARHR200340' => 'chi', 'CARHR232370' => 'chi', 'CARHR244670' => 'chi', 'CARHR244680' => 'chi', 'CARHR257520' => 'chi', 'Carub.0001s1872' => 'cru', 'Carub.0006s1130' => 'cru', 'Carub.0007s0396' => 'cru', 'Carub.0007s0397' => 'cru', 'Carub.0007s1608' => 'cru', 'Carub.0008s1068' => 'cru', 'Carub.0008s1077' => 'cru', 'Ca_16158_v3' => 'car', 'Ca_17571_v3' => 'car', 'Ca_21936_v3' => 'car', 'Ca_22350_v3' => 'car', 'CBR_g22445' => 'cbr', 'CBR_g26290' => 'cbr', 'Cc04_g09610' => 'ccan', 'Cc04_g12280' => 'ccan', 'Cc07_g10230' => 'ccan', 'CDE02G0093' => 'cde', 'CDE02G0701' => 'cde', 'CDE04G1050' => 'cde', 'CDE05G1833' => 'cde', 'CDE05G3058' => 'cde', 'CDE05G3380' => 'cde', 'CDE06G0536' => 'cde', 'Cfa006923' => 'cfa', 'Cfa009402' => 'cfa', 'Cfa018751' => 'cfa', 'Cfa019164' => 'cfa', 'Cfa022935' => 'cfa', 'Ciclev10019081m.g' => 'ccl', 'Ciclev10025076m.g' => 'ccl', 'Ciclev10030712m.g' => 'ccl', 'Ciclev10033760m.g' => 'ccl', 'CiPaw.05G105600' => 'cil', 'CiPaw.08G136700' => 'cil', 'CiPaw.11G003900' => 'cil', 'CiPaw.11G023700' => 'cil', 'CiPaw.12G003700' => 'cil', 'ClCG06G017100' => 'cla', 'ClCG06G018110' => 'cla', 'ClCG07G008800' => 'cla', 'ClCG07G015330' => 'cla', 'COL.COLO4_13698' => 'col', 'COL.COLO4_16659' => 'col', 'COL.COLO4_21986' => 'col', 'COL.COLO4_24049' => 'col', 'COL.COLO4_29061' => 'col', 'COL.COLO4_29075' => 'col', 'COL.COLO4_30094' => 'col', 'Cpa.g.c33689' => 'cpa', 'Cpa.g.sc108.39' => 'cpa', 'Cpa.g.sc108.41' => 'cpa', 'Cpa.g.sc1163.1' => 'cpa', 'Cpa.g.sc4.155' => 'cpa', 'Cpa.g.sc6.194' => 'cpa', 'CsaV3_1G000340' => 'csa', 'CsaV3_1G001400' => 'csa', 'CsaV3_4G002220' => 'csa', 'CsaV3_4G005370' => 'csa', 'CSS0007487' => 'camsi', 'CSS0008066' => 'camsi', 'CSS0009120' => 'camsi', 'CSS0015512' => 'camsi', 'CSS0022409' => 'camsi', 'CSS0025358' => 'camsi', 'CSS0044547' => 'camsi', 'DCAR_013057' => 'dca', 'DCAR_015058' => 'dca', 'DCAR_016027' => 'dca', 'DCAR_017327' => 'dca', 'DCAR_020743' => 'dca', 'DCAR_026157' => 'dca', 'DCAR_032339' => 'dca', 'DCAR_032340' => 'dca', 'Dinv11200' => 'din', 'Dinv11201' => 'din', 'Dinv20631' => 'din', 'Dinv23182' => 'din', 'Dinv33466' => 'din', 'Dinv33583' => 'din', 'Dinv38565' => 'din', 'Duzib068G0200' => 'dzi', 'Duzib147G0132' => 'dzi', 'Duzib147G0635' => 'dzi', 'Duzib205G1670' => 'dzi', 'Duzib251G0606' => 'dzi', 'ECA232G3336' => 'eca', 'ECA232G3763' => 'eca', 'ECA232G4845' => 'eca', 'ECA234G1607' => 'eca', 'ECA246G0932' => 'eca', 'ECA247G0781' => 'eca', 'ECA247G1932' => 'eca', 'ECA247G2079' => 'eca', 'ECA247G3338' => 'eca', 'ECA247G4115' => 'eca', 'EL10Ac3g06552' => 'bvu', 'EL10Ac5g10721' => 'bvu', 'EL10Ac5g10722' => 'bvu', 'EL10Ac5g10723' => 'bvu', 'EL10Ac5g11361' => 'bvu', 'EL10Ac6g13553' => 'bvu', 'EL10As8g23872' => 'bvu', 'Eucgr.B00250' => 'egr', 'Eucgr.B00251' => 'egr', 'Eucgr.B03533' => 'egr', 'Eucgr.I02381' => 'egr', 'Eucgr.K02700' => 'egr', 'FAN02G0174' => 'fan', 'FAN02G3146' => 'fan', 'FAN04G1672' => 'fan', 'FAN04G2273' => 'fan', 'FAN05G2791' => 'fan', 'FAN05G4035' => 'fan', 'FAN07G0834' => 'fan', 'FAN08G1198' => 'fan', 'FAN09G4182' => 'fan', 'FAN12G0496' => 'fan', 'FAN13G1027' => 'fan', 'FAN13G2951' => 'fan', 'FAN14G0705' => 'fan', 'FAN14G0720' => 'fan', 'FAN17G0201' => 'fan', 'FAN17G2665' => 'fan', 'FAN18G1456' => 'fan', 'FAN18G1525' => 'fan', 'FAN18G3500' => 'fan', 'FAN28G2670' => 'fan', 'FvH4_1g12391' => 'fve', 'FvH4_4g23220' => 'fve', 'FvH4_5g08810' => 'fve', 'FvH4_5g28960' => 'fve', 'FvH4_6g42820' => 'fve', 'FvH4_6g51110' => 'fve', 'Glyma.02G051802' => 'gma', 'Glyma.04G185300' => 'gma', 'Glyma.05G202900' => 'gma', 'Glyma.08G010300' => 'gma', 'Glyma.16G131900' => 'gma', 'Glyma.17G087900' => 'gma', 'Gohir.A07G048600' => 'ghi', 'Gohir.A11G179000' => 'ghi', 'Gohir.A12G140900' => 'ghi', 'Gohir.A12G140950' => 'ghi', 'Gohir.A12G191700' => 'ghi', 'Gohir.A13G086300' => 'ghi', 'Gohir.D07G052900' => 'ghi', 'Gohir.D11G186600' => 'ghi', 'Gohir.D12G145575' => 'ghi', 'Gohir.D12G145650' => 'ghi', 'Gohir.D12G145725' => 'ghi', 'Gohir.D12G194050' => 'ghi', 'Gohir.D13G091800' => 'ghi', 'Gorai.001G055900' => 'gra', 'Gorai.007G198400' => 'gra', 'Gorai.008G157000' => 'gra', 'Gorai.008G157100' => 'gra', 'Gorai.008G208700' => 'gra', 'Gorai.010G138700' => 'gra', 'GSVIVG01000977001' => 'vvi', 'GSVIVG01007708001' => 'vvi', 'GSVIVG01008587001' => 'vvi', 'GSVIVG01018849001' => 'vvi', 'GSVIVG01032432001' => 'vvi', 'HanXRQChr02g0034131' => 'han', 'HanXRQChr02g0035981' => 'han', 'HanXRQChr02g0035991' => 'han', 'HanXRQChr05g0155611' => 'han', 'HanXRQChr05g0155621' => 'han', 'HanXRQChr08g0236501' => 'han', 'HanXRQChr09g0261321' => 'han', 'HanXRQChr09g0272081' => 'han', 'HanXRQChr10g0310741' => 'han', 'HanXRQChr11g0325591' => 'han', 'HanXRQChr12g0385691' => 'han', 'HanXRQChr13g0387801' => 'han', 'HanXRQChr15g0463011' => 'han', 'Haze_03826' => 'cav', 'Haze_03827' => 'cav', 'Haze_07183' => 'cav', 'Haze_07537' => 'cav', 'Haze_07539' => 'cav', 'Haze_12461' => 'cav', 'Haze_16115' => 'cav', 'Haze_16808' => 'cav', 'Haze_18531' => 'cav', 'Hma1.2p1_0046F.1_g026700' => 'hma', 'Hma1.2p1_0046F.1_g026710' => 'hma', 'Hma1.2p1_0168F.1_g074340' => 'hma', 'Hma1.2p1_0266F.1_g107030' => 'hma', 'Hma1.2p1_0266F.1_g107060' => 'hma', 'Hma1.2p1_0275F.1_g110510' => 'hma', 'Hma1.2p1_0592F.1_g185490' => 'hma', 'Hma1.2p1_0592F.1_g185500' => 'hma', 'Hma1.2p1_0592F.1_g185510' => 'hma', 'Hma1.2p1_0592F.1_g185520' => 'hma', 'Hma1.2p1_0592F.1_g185530' => 'hma', 'Hma1.2p1_0818F.1_g223450' => 'hma', 'HPP92_009708' => 'vpl', 'HPP92_009793' => 'vpl', 'HPP92_009796' => 'vpl', 'HPP92_009797' => 'vpl', 'HPP92_014940' => 'vpl', 'HPP92_014988' => 'vpl', 'Hund02463' => 'sun', 'Hund02760' => 'sun', 'Hund05071' => 'sun', 'Hund10108' => 'sun', 'Hund11204' => 'sun', 'Hund14016' => 'sun', 'Hund16464' => 'sun', 'Lalb_Chr09g0333391' => 'lal', 'Lalb_Chr11g0070461' => 'lal', 'Lalb_Chr12g0201671' => 'lal', 'Lalb_Chr13g0297161' => 'lal', 'Lj1g0002823' => 'lja', 'Lj3C1074T6' => 'lonja', 'Lj4A212T28' => 'lonja', 'Lj4g0005516' => 'lja', 'Lj4g0013705' => 'lja', 'Lj4g0027865' => 'lja', 'Lj5C92G16' => 'lonja', 'Lj5C92T12' => 'lonja', 'Lj7C596T3' => 'lonja', 'Lj9A446G59' => 'lonja', 'Lj9A482G21' => 'lonja', 'Lsat_1_v5_gn_1_28261' => 'lsa', 'Lsat_1_v5_gn_1_28281' => 'lsa', 'Lsat_1_v5_gn_1_32721' => 'lsa', 'Lsat_1_v5_gn_4_151760' => 'lsa', 'Lsat_1_v5_gn_4_2120' => 'lsa', 'Lsat_1_v5_gn_4_75761' => 'lsa', 'Lsat_1_v5_gn_5_10920' => 'lsa', 'Manes.02G099900' => 'mes', 'Manes.11G096200' => 'mes', 'Manes.12G007200' => 'mes', 'Manes.14G048300' => 'mes', 'Manes.17G114700' => 'mes', 'Mapoly0002s0070' => 'mpo', 'Mapoly0029s0099' => 'mpo', 'MBI07_g24742_MAGBIO' => 'mbi', 'MBI10_g27988_MAGBIO' => 'mbi', 'MBI11_g13057_MAGBIO' => 'mbi', 'MD02G1137200' => 'mdo', 'MD06G1137200' => 'mdo', 'MD07G1122300' => 'mdo', 'MD09G1078200' => 'mdo', 'MD13G1123700' => 'mdo', 'MD14G1151900' => 'mdo', 'MD17G1030900' => 'mdo', 'MD17G1068200' => 'mdo', 'MD17G1068600' => 'mdo', 'Medtr3g077540' => 'mtr', 'Medtr4g105530' => 'mtr', 'Medtr8g076580' => 'mtr', 'Medtr8g076590' => 'mtr', 'Medtr8g096410' => 'mtr', 'MELO3C016411.2' => 'cme', 'MELO3C017780.2' => 'cme', 'MELO3C022560.2' => 'cme', 'MELO3C026187.2' => 'cme', 'MELO3C026286.2' => 'cme', 'MELO3C032854.2' => 'cme', 'Migut.H02495' => 'egut', 'Migut.I00561' => 'egut', 'Migut.K01015' => 'egut', 'Migut.K01016' => 'egut', 'Migut.L00743' => 'egut', 'Migut.L00744' => 'egut', 'Migut.L00746' => 'egut', 'Migut.L00798' => 'egut', 'Migut.L00799' => 'egut', 'Migut.N02096' => 'egut', 'MSTRG.11259' => 'ama', 'MSTRG.23142' => 'ama', 'MSTRG.2499' => 'ama', 'Nitab4.5_0000003g0730' => 'nta', 'Nitab4.5_0000137g0020' => 'nta', 'Nitab4.5_0000721g0210' => 'nta', 'Nitab4.5_0000723g0050' => 'nta', 'Nitab4.5_0000913g0070' => 'nta', 'Nitab4.5_0001332g0040' => 'nta', 'Nitab4.5_0001771g0050' => 'nta', 'Nitab4.5_0001918g0050' => 'nta', 'Nitab4.5_0002686g0030' => 'nta', 'Nitab4.5_0003156g0020' => 'nta', 'Nitab4.5_0003383g0040' => 'nta', 'Nitab4.5_0003918g0010' => 'nta', 'Nitab4.5_0006760g0010' => 'nta', 'Nn1g05981' => 'nnu', 'Nn1g06288' => 'nnu', 'Nn3g16371' => 'nnu', 'Nn3g16786' => 'nnu', 'Nn4g22232' => 'nnu', 'Oeu005144.1' => 'oeu', 'Oeu005145.1' => 'oeu', 'Oeu011348.1' => 'oeu', 'Oeu016415.1' => 'oeu', 'Oeu023501.1' => 'oeu', 'Oeu044473.1' => 'oeu', 'Oeu048892.2' => 'oeu', 'Os01g0549200' => 'osa', 'Os02g0469300' => 'osa', 'Os04g0311100' => 'osa', 'Os06g0474900' => 'osa', 'Os10g0181700' => 'osa', 'Os11g0454800' => 'osa', 'Peaxi162Scf00037g00714' => 'pax', 'Peaxi162Scf00084g01217' => 'pax', 'Peaxi162Scf00257g00217' => 'pax', 'Peaxi162Scf00516g00215' => 'pax', 'Peaxi162Scf00689g00123' => 'pax', 'PGR044G2719' => 'pgr', 'PGR083G1360' => 'pgr', 'PGR102G2849' => 'pgr', 'PGR119G2534' => 'pgr', 'PGSC0003DMG400003538' => 'stu', 'PGSC0003DMG400028138' => 'stu', 'PGSC0003DMG400031732' => 'stu', 'PGSC0003DMG400038165' => 'stu', 'Phvul.002G284600' => 'pvu', 'Phvul.003G258200' => 'pvu', 'Phvul.009G176500' => 'pvu', 'Potri.003G167201' => 'ptr', 'Potri.005G118400' => 'ptr', 'Potri.012G089000' => 'ptr', 'Potri.012G102800' => 'ptr', 'Potri.015G079400' => 'ptr', 'Potri.015G100900' => 'ptr', 'Pp3c14_9810' => 'ppa', 'Pp3c15_10450' => 'ppa', 'Pp3c20_19150' => 'ppa', 'Pp3c23_12740' => 'ppa', 'Pp3c23_6310' => 'ppa', 'Pp3c24_3720' => 'ppa', 'Pp3c27_2580' => 'ppa', 'Pp3c9_8990' => 'ppa', 'PRCOL_00002854' => 'pco', 'Prupe.1G221200' => 'ppe', 'Prupe.3G289000' => 'ppe', 'Prupe.5G147000' => 'ppe', 'Prupe.6G157300' => 'ppe', 'Prupe.7G163400' => 'ppe', 'Psat0s2177g0040' => 'psa', 'Psat3g174760' => 'psa', 'Psat3g192160' => 'psa', 'Psat4g058520' => 'psa', 'Psat4g096840' => 'psa', 'Psat7g037320' => 'psa', 'PSO017G1274' => 'pso', 'PSO017G5166' => 'pso', 'PSO063G4558' => 'pso', 'PSO170G4458' => 'pso', 'PSO170G5005' => 'pso', 'PSO210G6156' => 'pso', 'PSO210G6635' => 'pso', 'PSO210G7397' => 'pso', 'PSO210G7700' => 'pso', 'PSO455G0035' => 'pso', 'PSO455G0180' => 'pso', 'PSO478G4515' => 'pso', 'PSO832G1305' => 'pso', 'PSO832G3489' => 'pso', 'QL02p075247' => 'qlo', 'QL03p051148' => 'qlo', 'QL05p010313' => 'qlo', 'QL06p034627' => 'qlo', 'QL10p001889' => 'qlo', 'QL10p010846' => 'qlo', 'RcHm_v2.0_Chr1g0350621' => 'rch', 'RcHm_v2.0_Chr1g0350641' => 'rch', 'RcHm_v2.0_Chr2g0092891' => 'rch', 'RcHm_v2.0_Chr2g0100251' => 'rch', 'RcHm_v2.0_Chr2g0158661' => 'rch', 'RcHm_v2.0_Chr2g0172741' => 'rch', 'RcHm_v2.0_Chr4g0429571' => 'rch', 'RcHm_v2.0_Chr5g0042471' => 'rch', 'RcHm_v2.0_Chr7g0189451' => 'rch', 'Rhsim08G0052000' => 'rsi', 'Rhsim08G0174400' => 'rsi', 'Rhsim08G0193200' => 'rsi', 'Rhsim10G0214800' => 'rsi', 'Rhsim10G0214900' => 'rsi', 'Rhsim10G0215000' => 'rsi', 'Rhsim12G0022900' => 'rsi', 'Rhsim12G0177500' => 'rsi', 'Rhsim12G0177700' => 'rsi', 'Sabra03G0122600' => 'sbr', 'Sabra05G0097400' => 'sbr', 'Sabra12G0064100' => 'sbr', 'Sabra15G0121300' => 'sbr', 'SalBow2G0642' => 'sbo', 'SalBow5G2667' => 'sbo', 'SalBow5G4873' => 'sbo', 'SalBow8G2395' => 'sbo', 'Sc03g0003290' => 'sci', 'Sc10g0010130' => 'sci', 'Sc22g0003650' => 'sci', 'Sed0001603' => 'sed', 'Sed0004259' => 'sed', 'Sed0006789' => 'sed', 'Sed0011838' => 'sed', 'Sed0012964' => 'sed', 'Sed0016383' => 'sed', 'Sed0019010' => 'sed', 'Sed0020188' => 'sed', 'SEGI_04702' => 'sgi', 'SEGI_17231' => 'sgi', 'SEGI_18877' => 'sgi', 'SEGI_25196' => 'sgi', 'SEGI_25515' => 'sgi', 'SEGI_28445' => 'sgi', 'SEGI_37452' => 'sgi', 'SGA_v2.0_scaffold188G40336' => 'sas', 'SGA_v2.0_scaffold228G43247' => 'sas', 'SGA_v2.0_scaffold280G46853' => 'sas', 'SGA_v2.0_scaffold34G13808' => 'sas', 'SGA_v2.0_scaffold40G15576' => 'sas', 'SGA_v2.0_scaffold611G53188' => 'sas', 'SGA_v2.0_scaffold78G25461' => 'sas', 'SGA_v2.0_scaffold90G27888' => 'sas', 'SHI08601' => 'shi', 'SHI08606' => 'shi', 'SHI17117' => 'shi', 'SHI17119' => 'shi', 'SMO118G0201' => 'smo', 'SMO169G0247' => 'smo', 'SMO176G0006' => 'smo', 'SMO176G0015' => 'smo', 'SMO202G0006' => 'smo', 'SMO240G0050' => 'smo', 'SMO286G0009' => 'smo', 'SMO338G0033' => 'smo', 'SMO356G0533' => 'smo', 'SMO364G0382' => 'smo', 'SMO367G0166' => 'smo', 'SMO367G1098' => 'smo', 'Solyc01g009920.3' => 'sly', 'Solyc01g099300.3' => 'sly', 'Solyc02g084700.3' => 'sly', 'Solyc03g097520.3' => 'sly', 'Solyc06g071580.3' => 'sly', 'Solyc10g081760.3' => 'sly', 'Sopen01g005480' => 'spe', 'Sopen01g042850' => 'spe', 'Sopen02g029370' => 'spe', 'Sopen03g028280' => 'spe', 'Sopen06g027870' => 'spe', 'Sopen10g032270' => 'spe', 'Sp5g18180' => 'spa', 'Sp6g12880' => 'spa', 'Sp6g30850' => 'spa', 'Sp7g22960' => 'spa', 'Sp7g34010' => 'spa', 'SpUn1326_0010' => 'spa', 'TAR371G0242' => 'tar', 'TAR622G0638' => 'tar', 'TAR628G1548' => 'tar', 'TAR629G1079' => 'tar', 'TAR629G3413' => 'tar', 'THA.LOC104804249' => 'tha', 'THA.LOC104808315' => 'tha', 'THA.LOC104809238' => 'tha', 'THA.LOC104825484' => 'tha', 'Thecc.01G025500' => 'tca', 'Thecc.03G015800' => 'tca', 'Thecc.03G018000' => 'tca', 'Thecc.03G134800' => 'tca', 'Thecc.04G014700' => 'tca', 'Thhalv10006991m.g' => 'esa', 'Thhalv10012707m.g' => 'esa', 'Thhalv10015739m.g' => 'esa', 'Thhalv10024553m.g' => 'esa', 'Thhalv10024673m.g' => 'esa', 'Thhalv10029187m.g' => 'esa', 'TPR.G12971' => 'tpr', 'TPR.G29396' => 'tpr', 'TPR.G33376' => 'tpr', 'TPR.G35508' => 'tpr', 'TPR.G35516' => 'tpr', 'TPR.G37317' => 'tpr', 'TPR.G37389' => 'tpr', 'TPR.G37523' => 'tpr', 'TPR.G559' => 'tpr', 'TWI14G0070' => 'twi', 'TWI14G0729' => 'twi', 'TWI18G0596' => 'twi', 'TWI39G0780' => 'twi', 'TWI39G0850' => 'twi', 'TWI73G1052' => 'twi', 'unitig_52.g17485' => 'ugi', 'unitig_61.g26355' => 'ugi', 'vmacro01040' => 'vma', 'vmacro16731' => 'vma', 'vmacro18270' => 'vma', 'vmacro19142' => 'vma', 'vmacro19407' => 'vma', 'vmacro19408' => 'vma', 'vmacro21899' => 'vma', 'vmacro21900' => 'vma', 'vmacro21901' => 'vma', 'VMungo0251G0490' => 'vmu', 'VMungo0251G1748' => 'vmu', 'VMungo1309G0421' => 'vmu', 'Zm00001eb086500' => 'zma', 'Zm00001eb150680' => 'zma', 'Zm00001eb162330' => 'zma', 'Zm00001eb203130' => 'zma', 'Zm00001eb369480' => 'zma', 'Zm00001eb382340' => 'zma', 'Zm00001eb416360' => 'zma' ), 'gf_id' => 'HOM05D000902', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000902' ), 'data_identifier' => 'HOM05D000902', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000902', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '663', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02470' => 'bna', 'A01p16260' => 'bna', 'A02p01680' => 'bna', 'A03p16600' => 'bna', 'A03p55660' => 'bna', 'A03p64160' => 'bna', 'A03p64170' => 'bna', 'A08p31900' => 'bna', 'A09p59530' => 'bna', 'A10p08230' => 'bna', 'A10p25090' => 'bna', 'Aa31LG3G7100' => 'aar', 'Aa31LG3G7110' => 'aar', 'Aa31LG6G13160' => 'aar', 'Aa31LG7G10770' => 'aar', 'Aa31LG7G3830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2723' => 'aag', 'Actinidia08045' => 'ach', 'Actinidia08888' => 'ach', 'Actinidia18333' => 'ach', 'Actinidia19334' => 'ach', 'Actinidia25552' => 'ach', 'Actinidia26089' => 'ach', 'Actinidia30615' => 'ach', 'Actinidia30616' => 'ach', 'Actinidia33083' => 'ach', 'Actinidia35762' => 'ach', 'Ah.02g110620' => 'amhyb', 'Ah.11g046390' => 'amhyb', 'AL1G31670' => 'aly', 'AL6G23730' => 'aly', 'AL7G14740' => 'aly', 'AL7G14750' => 'aly', 'AL7G14760' => 'aly', 'AL7G28220' => 'aly', 'AL8G24940' => 'aly', 'Aqoxy3G01665' => 'aox', 'Aqoxy3G02853' => 'aox', 'Aqoxy5G01513' => 'aox', 'Aqoxy5G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8SKA4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ75LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKDA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0LJZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7REX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZP4YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWX7I5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2QKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS0L9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPCD8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q161UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC7XCF' => 'arhy', 'AT1G19100' => 'ath', 'AT4G24970' => 'ath', 'AT4G36270' => 'ath', 'AT4G36280' => 'ath', 'AT4G36290' => 'ath', 'AT5G13130' => 'ath', 'AT5G50780' => 'ath', 'ATR0582G266' => 'atr', 'ATR0661G195' => 'atr', 'ATR1152G031' => 'atr', 'Atru.chr11.2382' => 'acertr', 'Atru.chr12.2337' => 'acertr', 'Atru.chr3.744' => 'acertr', 'Atru.chr6.1870' => 'acertr', 'Atru.chr9.2515' => 'acertr', 'AUR62004120' => 'cqu', 'AUR62005667' => 'cqu', 'AUR62007634' => 'cqu', 'AUR62008186' => 'cqu', 'AUR62008187' => 'cqu', 'AUR62008188' => 'cqu', 'AUR62027954' => 'cqu', 'AUR62028766' => 'cqu', 'AUR62028767' => 'cqu', 'AUR62028768' => 'cqu', 'AUR62028886' => 'cqu', 'AUR62029563' => 'cqu', 'AUR62038832' => 'cqu', 'BcaB01g04149' => 'bca', 'BcaB03g12940' => 'bca', 'BcaB03g13090' => 'bca', 'BcaB03g14466' => 'bca', 'BcaB05g24035' => 'bca', 'BcaC01g06050' => 'bca', 'BcaC04g19148' => 'bca', 'BcaC04g20761' => 'bca', 'BcaC06g32845' => 'bca', 'BcaC07g41274' => 'bca', 'BcaC09g50827' => 'bca', 'BcaNung00741' => 'bca', 'BcaNung00742' => 'bca', 'BcaNung01859' => 'bca', 'BcaNung03985' => 'bca', 'BcaNung03989' => 'bca', 'BcaNung05661' => 'bca', 'BolC1t00257H' => 'bol', 'BolC1t01956H' => 'bol', 'BolC2t06534H' => 'bol', 'BolC3t14334H' => 'bol', 'BolC5t30451H' => 'bol', 'BolC7t45880H' => 'bol', 'BolC7t46586H' => 'bol', 'BolC8t49301H' => 'bol', 'BolC8t51837H' => 'bol', 'BolC9t56822H' => 'bol', 'BolC9t59235H' => 'bol', 'BraA01t00234Z' => 'bra', 'BraA01t01563Z' => 'bra', 'BraA02t05147Z' => 'bra', 'BraA03t10947Z' => 'bra', 'BraA03t14633Z' => 'bra', 'BraA08t35112Z' => 'bra', 'BraA09t41330Z' => 'bra', 'BraA10t44570Z' => 'bra', 'C01p02670' => 'bna', 'C01p20260' => 'bna', 'C02p05890' => 'bna', 'C03p19530' => 'bna', 'C05p17470' => 'bna', 'C07p53900' => 'bna', 'C07p61630' => 'bna', 'C08p16800' => 'bna', 'C08p42810' => 'bna', 'C09p39480' => 'bna', 'C09p63980' => 'bna', 'CAN.G1001.7' => 'can', 'CAN.G1034.55' => 'can', 'CAN.G143.7' => 'can', 'CAN.G3340.1' => 'can', 'CAN.G358.19' => 'can', 'CAN.G373.2' => 'can', 'CAN.G674.16' => 'can', 'CAN.G674.17' => 'can', 'CAN.G674.18' => 'can', 'CAN.G732.2' => 'can', 'CAN.G732.3' => 'can', 'CAN.G993.39' => 'can', 'CANSAT01G2052' => 'cansat', 'CANSAT80G0070' => 'cansat', 'CANSAT80G0483' => 'cansat', 'CANSAT80G0625' => 'cansat', 'CARHR019690' => 'chi', 'CARHR080280' => 'chi', 'CARHR152750' => 'chi', 'CARHR152760' => 'chi', 'CARHR152770' => 'chi', 'CARHR200340' => 'chi', 'CARHR232370' => 'chi', 'CARHR244670' => 'chi', 'CARHR244680' => 'chi', 'CARHR257520' => 'chi', 'Carub.0001s1872' => 'cru', 'Carub.0006s1130' => 'cru', 'Carub.0007s0396' => 'cru', 'Carub.0007s0397' => 'cru', 'Carub.0007s1608' => 'cru', 'Carub.0008s1068' => 'cru', 'Carub.0008s1077' => 'cru', 'Ca_16158_v3' => 'car', 'Ca_17571_v3' => 'car', 'Ca_21936_v3' => 'car', 'Ca_22350_v3' => 'car', 'CBR_g22445' => 'cbr', 'CBR_g26290' => 'cbr', 'Cc04_g09610' => 'ccan', 'Cc04_g12280' => 'ccan', 'Cc07_g10230' => 'ccan', 'CDE02G0093' => 'cde', 'CDE02G0701' => 'cde', 'CDE04G1050' => 'cde', 'CDE05G1833' => 'cde', 'CDE05G3058' => 'cde', 'CDE05G3380' => 'cde', 'CDE06G0536' => 'cde', 'Cfa006923' => 'cfa', 'Cfa009402' => 'cfa', 'Cfa018751' => 'cfa', 'Cfa019164' => 'cfa', 'Cfa022935' => 'cfa', 'Ciclev10019081m.g' => 'ccl', 'Ciclev10025076m.g' => 'ccl', 'Ciclev10030712m.g' => 'ccl', 'Ciclev10033760m.g' => 'ccl', 'CiPaw.05G105600' => 'cil', 'CiPaw.08G136700' => 'cil', 'CiPaw.11G003900' => 'cil', 'CiPaw.11G023700' => 'cil', 'CiPaw.12G003700' => 'cil', 'ClCG06G017100' => 'cla', 'ClCG06G018110' => 'cla', 'ClCG07G008800' => 'cla', 'ClCG07G015330' => 'cla', 'COL.COLO4_13698' => 'col', 'COL.COLO4_16659' => 'col', 'COL.COLO4_21986' => 'col', 'COL.COLO4_24049' => 'col', 'COL.COLO4_29061' => 'col', 'COL.COLO4_29075' => 'col', 'COL.COLO4_30094' => 'col', 'Cpa.g.c33689' => 'cpa', 'Cpa.g.sc108.39' => 'cpa', 'Cpa.g.sc108.41' => 'cpa', 'Cpa.g.sc1163.1' => 'cpa', 'Cpa.g.sc4.155' => 'cpa', 'Cpa.g.sc6.194' => 'cpa', 'CsaV3_1G000340' => 'csa', 'CsaV3_1G001400' => 'csa', 'CsaV3_4G002220' => 'csa', 'CsaV3_4G005370' => 'csa', 'CSS0007487' => 'camsi', 'CSS0008066' => 'camsi', 'CSS0009120' => 'camsi', 'CSS0015512' => 'camsi', 'CSS0022409' => 'camsi', 'CSS0025358' => 'camsi', 'CSS0044547' => 'camsi', 'DCAR_013057' => 'dca', 'DCAR_015058' => 'dca', 'DCAR_016027' => 'dca', 'DCAR_017327' => 'dca', 'DCAR_020743' => 'dca', 'DCAR_026157' => 'dca', 'DCAR_032339' => 'dca', 'DCAR_032340' => 'dca', 'Dinv11200' => 'din', 'Dinv11201' => 'din', 'Dinv20631' => 'din', 'Dinv23182' => 'din', 'Dinv33466' => 'din', 'Dinv33583' => 'din', 'Dinv38565' => 'din', 'Duzib068G0200' => 'dzi', 'Duzib147G0132' => 'dzi', 'Duzib147G0635' => 'dzi', 'Duzib205G1670' => 'dzi', 'Duzib251G0606' => 'dzi', 'ECA232G3336' => 'eca', 'ECA232G3763' => 'eca', 'ECA232G4845' => 'eca', 'ECA234G1607' => 'eca', 'ECA246G0932' => 'eca', 'ECA247G0781' => 'eca', 'ECA247G1932' => 'eca', 'ECA247G2079' => 'eca', 'ECA247G3338' => 'eca', 'ECA247G4115' => 'eca', 'EL10Ac3g06552' => 'bvu', 'EL10Ac5g10721' => 'bvu', 'EL10Ac5g10722' => 'bvu', 'EL10Ac5g10723' => 'bvu', 'EL10Ac5g11361' => 'bvu', 'EL10Ac6g13553' => 'bvu', 'EL10As8g23872' => 'bvu', 'Eucgr.B00250' => 'egr', 'Eucgr.B00251' => 'egr', 'Eucgr.B03533' => 'egr', 'Eucgr.I02381' => 'egr', 'Eucgr.K02700' => 'egr', 'FAN02G0174' => 'fan', 'FAN02G3146' => 'fan', 'FAN04G1672' => 'fan', 'FAN04G2273' => 'fan', 'FAN05G2791' => 'fan', 'FAN05G4035' => 'fan', 'FAN07G0834' => 'fan', 'FAN08G1198' => 'fan', 'FAN09G4182' => 'fan', 'FAN12G0496' => 'fan', 'FAN13G1027' => 'fan', 'FAN13G2951' => 'fan', 'FAN14G0705' => 'fan', 'FAN14G0720' => 'fan', 'FAN17G0201' => 'fan', 'FAN17G2665' => 'fan', 'FAN18G1456' => 'fan', 'FAN18G1525' => 'fan', 'FAN18G3500' => 'fan', 'FAN28G2670' => 'fan', 'FvH4_1g12391' => 'fve', 'FvH4_4g23220' => 'fve', 'FvH4_5g08810' => 'fve', 'FvH4_5g28960' => 'fve', 'FvH4_6g42820' => 'fve', 'FvH4_6g51110' => 'fve', 'Glyma.02G051802' => 'gma', 'Glyma.04G185300' => 'gma', 'Glyma.05G202900' => 'gma', 'Glyma.08G010300' => 'gma', 'Glyma.16G131900' => 'gma', 'Glyma.17G087900' => 'gma', 'Gohir.A07G048600' => 'ghi', 'Gohir.A11G179000' => 'ghi', 'Gohir.A12G140900' => 'ghi', 'Gohir.A12G140950' => 'ghi', 'Gohir.A12G191700' => 'ghi', 'Gohir.A13G086300' => 'ghi', 'Gohir.D07G052900' => 'ghi', 'Gohir.D11G186600' => 'ghi', 'Gohir.D12G145575' => 'ghi', 'Gohir.D12G145650' => 'ghi', 'Gohir.D12G145725' => 'ghi', 'Gohir.D12G194050' => 'ghi', 'Gohir.D13G091800' => 'ghi', 'Gorai.001G055900' => 'gra', 'Gorai.007G198400' => 'gra', 'Gorai.008G157000' => 'gra', 'Gorai.008G157100' => 'gra', 'Gorai.008G208700' => 'gra', 'Gorai.010G138700' => 'gra', 'GSVIVG01000977001' => 'vvi', 'GSVIVG01007708001' => 'vvi', 'GSVIVG01008587001' => 'vvi', 'GSVIVG01018849001' => 'vvi', 'GSVIVG01032432001' => 'vvi', 'HanXRQChr02g0034131' => 'han', 'HanXRQChr02g0035981' => 'han', 'HanXRQChr02g0035991' => 'han', 'HanXRQChr05g0155611' => 'han', 'HanXRQChr05g0155621' => 'han', 'HanXRQChr08g0236501' => 'han', 'HanXRQChr09g0261321' => 'han', 'HanXRQChr09g0272081' => 'han', 'HanXRQChr10g0310741' => 'han', 'HanXRQChr11g0325591' => 'han', 'HanXRQChr12g0385691' => 'han', 'HanXRQChr13g0387801' => 'han', 'HanXRQChr15g0463011' => 'han', 'Haze_03826' => 'cav', 'Haze_03827' => 'cav', 'Haze_07183' => 'cav', 'Haze_07537' => 'cav', 'Haze_07539' => 'cav', 'Haze_12461' => 'cav', 'Haze_16115' => 'cav', 'Haze_16808' => 'cav', 'Haze_18531' => 'cav', 'Hma1.2p1_0046F.1_g026700' => 'hma', 'Hma1.2p1_0046F.1_g026710' => 'hma', 'Hma1.2p1_0168F.1_g074340' => 'hma', 'Hma1.2p1_0266F.1_g107030' => 'hma', 'Hma1.2p1_0266F.1_g107060' => 'hma', 'Hma1.2p1_0275F.1_g110510' => 'hma', 'Hma1.2p1_0592F.1_g185490' => 'hma', 'Hma1.2p1_0592F.1_g185500' => 'hma', 'Hma1.2p1_0592F.1_g185510' => 'hma', 'Hma1.2p1_0592F.1_g185520' => 'hma', 'Hma1.2p1_0592F.1_g185530' => 'hma', 'Hma1.2p1_0818F.1_g223450' => 'hma', 'HPP92_009708' => 'vpl', 'HPP92_009793' => 'vpl', 'HPP92_009796' => 'vpl', 'HPP92_009797' => 'vpl', 'HPP92_014940' => 'vpl', 'HPP92_014988' => 'vpl', 'Hund02463' => 'sun', 'Hund02760' => 'sun', 'Hund05071' => 'sun', 'Hund10108' => 'sun', 'Hund11204' => 'sun', 'Hund14016' => 'sun', 'Hund16464' => 'sun', 'Lalb_Chr09g0333391' => 'lal', 'Lalb_Chr11g0070461' => 'lal', 'Lalb_Chr12g0201671' => 'lal', 'Lalb_Chr13g0297161' => 'lal', 'Lj1g0002823' => 'lja', 'Lj3C1074T6' => 'lonja', 'Lj4A212T28' => 'lonja', 'Lj4g0005516' => 'lja', 'Lj4g0013705' => 'lja', 'Lj4g0027865' => 'lja', 'Lj5C92G16' => 'lonja', 'Lj5C92T12' => 'lonja', 'Lj7C596T3' => 'lonja', 'Lj9A446G59' => 'lonja', 'Lj9A482G21' => 'lonja', 'Lsat_1_v5_gn_1_28261' => 'lsa', 'Lsat_1_v5_gn_1_28281' => 'lsa', 'Lsat_1_v5_gn_1_32721' => 'lsa', 'Lsat_1_v5_gn_4_151760' => 'lsa', 'Lsat_1_v5_gn_4_2120' => 'lsa', 'Lsat_1_v5_gn_4_75761' => 'lsa', 'Lsat_1_v5_gn_5_10920' => 'lsa', 'Manes.02G099900' => 'mes', 'Manes.11G096200' => 'mes', 'Manes.12G007200' => 'mes', 'Manes.14G048300' => 'mes', 'Manes.17G114700' => 'mes', 'Mapoly0002s0070' => 'mpo', 'Mapoly0029s0099' => 'mpo', 'MBI07_g24742_MAGBIO' => 'mbi', 'MBI10_g27988_MAGBIO' => 'mbi', 'MBI11_g13057_MAGBIO' => 'mbi', 'MD02G1137200' => 'mdo', 'MD06G1137200' => 'mdo', 'MD07G1122300' => 'mdo', 'MD09G1078200' => 'mdo', 'MD13G1123700' => 'mdo', 'MD14G1151900' => 'mdo', 'MD17G1030900' => 'mdo', 'MD17G1068200' => 'mdo', 'MD17G1068600' => 'mdo', 'Medtr3g077540' => 'mtr', 'Medtr4g105530' => 'mtr', 'Medtr8g076580' => 'mtr', 'Medtr8g076590' => 'mtr', 'Medtr8g096410' => 'mtr', 'MELO3C016411.2' => 'cme', 'MELO3C017780.2' => 'cme', 'MELO3C022560.2' => 'cme', 'MELO3C026187.2' => 'cme', 'MELO3C026286.2' => 'cme', 'MELO3C032854.2' => 'cme', 'Migut.H02495' => 'egut', 'Migut.I00561' => 'egut', 'Migut.K01015' => 'egut', 'Migut.K01016' => 'egut', 'Migut.L00743' => 'egut', 'Migut.L00744' => 'egut', 'Migut.L00746' => 'egut', 'Migut.L00798' => 'egut', 'Migut.L00799' => 'egut', 'Migut.N02096' => 'egut', 'MSTRG.11259' => 'ama', 'MSTRG.23142' => 'ama', 'MSTRG.2499' => 'ama', 'Nitab4.5_0000003g0730' => 'nta', 'Nitab4.5_0000137g0020' => 'nta', 'Nitab4.5_0000721g0210' => 'nta', 'Nitab4.5_0000723g0050' => 'nta', 'Nitab4.5_0000913g0070' => 'nta', 'Nitab4.5_0001332g0040' => 'nta', 'Nitab4.5_0001771g0050' => 'nta', 'Nitab4.5_0001918g0050' => 'nta', 'Nitab4.5_0002686g0030' => 'nta', 'Nitab4.5_0003156g0020' => 'nta', 'Nitab4.5_0003383g0040' => 'nta', 'Nitab4.5_0003918g0010' => 'nta', 'Nitab4.5_0006760g0010' => 'nta', 'Nn1g05981' => 'nnu', 'Nn1g06288' => 'nnu', 'Nn3g16371' => 'nnu', 'Nn3g16786' => 'nnu', 'Nn4g22232' => 'nnu', 'Oeu005144.1' => 'oeu', 'Oeu005145.1' => 'oeu', 'Oeu011348.1' => 'oeu', 'Oeu016415.1' => 'oeu', 'Oeu023501.1' => 'oeu', 'Oeu044473.1' => 'oeu', 'Oeu048892.2' => 'oeu', 'Os01g0549200' => 'osa', 'Os02g0469300' => 'osa', 'Os04g0311100' => 'osa', 'Os06g0474900' => 'osa', 'Os10g0181700' => 'osa', 'Os11g0454800' => 'osa', 'Peaxi162Scf00037g00714' => 'pax', 'Peaxi162Scf00084g01217' => 'pax', 'Peaxi162Scf00257g00217' => 'pax', 'Peaxi162Scf00516g00215' => 'pax', 'Peaxi162Scf00689g00123' => 'pax', 'PGR044G2719' => 'pgr', 'PGR083G1360' => 'pgr', 'PGR102G2849' => 'pgr', 'PGR119G2534' => 'pgr', 'PGSC0003DMG400003538' => 'stu', 'PGSC0003DMG400028138' => 'stu', 'PGSC0003DMG400031732' => 'stu', 'PGSC0003DMG400038165' => 'stu', 'Phvul.002G284600' => 'pvu', 'Phvul.003G258200' => 'pvu', 'Phvul.009G176500' => 'pvu', 'Potri.003G167201' => 'ptr', 'Potri.005G118400' => 'ptr', 'Potri.012G089000' => 'ptr', 'Potri.012G102800' => 'ptr', 'Potri.015G079400' => 'ptr', 'Potri.015G100900' => 'ptr', 'Pp3c14_9810' => 'ppa', 'Pp3c15_10450' => 'ppa', 'Pp3c20_19150' => 'ppa', 'Pp3c23_12740' => 'ppa', 'Pp3c23_6310' => 'ppa', 'Pp3c24_3720' => 'ppa', 'Pp3c27_2580' => 'ppa', 'Pp3c9_8990' => 'ppa', 'PRCOL_00002854' => 'pco', 'Prupe.1G221200' => 'ppe', 'Prupe.3G289000' => 'ppe', 'Prupe.5G147000' => 'ppe', 'Prupe.6G157300' => 'ppe', 'Prupe.7G163400' => 'ppe', 'Psat0s2177g0040' => 'psa', 'Psat3g174760' => 'psa', 'Psat3g192160' => 'psa', 'Psat4g058520' => 'psa', 'Psat4g096840' => 'psa', 'Psat7g037320' => 'psa', 'PSO017G1274' => 'pso', 'PSO017G5166' => 'pso', 'PSO063G4558' => 'pso', 'PSO170G4458' => 'pso', 'PSO170G5005' => 'pso', 'PSO210G6156' => 'pso', 'PSO210G6635' => 'pso', 'PSO210G7397' => 'pso', 'PSO210G7700' => 'pso', 'PSO455G0035' => 'pso', 'PSO455G0180' => 'pso', 'PSO478G4515' => 'pso', 'PSO832G1305' => 'pso', 'PSO832G3489' => 'pso', 'QL02p075247' => 'qlo', 'QL03p051148' => 'qlo', 'QL05p010313' => 'qlo', 'QL06p034627' => 'qlo', 'QL10p001889' => 'qlo', 'QL10p010846' => 'qlo', 'RcHm_v2.0_Chr1g0350621' => 'rch', 'RcHm_v2.0_Chr1g0350641' => 'rch', 'RcHm_v2.0_Chr2g0092891' => 'rch', 'RcHm_v2.0_Chr2g0100251' => 'rch', 'RcHm_v2.0_Chr2g0158661' => 'rch', 'RcHm_v2.0_Chr2g0172741' => 'rch', 'RcHm_v2.0_Chr4g0429571' => 'rch', 'RcHm_v2.0_Chr5g0042471' => 'rch', 'RcHm_v2.0_Chr7g0189451' => 'rch', 'Rhsim08G0052000' => 'rsi', 'Rhsim08G0174400' => 'rsi', 'Rhsim08G0193200' => 'rsi', 'Rhsim10G0214800' => 'rsi', 'Rhsim10G0214900' => 'rsi', 'Rhsim10G0215000' => 'rsi', 'Rhsim12G0022900' => 'rsi', 'Rhsim12G0177500' => 'rsi', 'Rhsim12G0177700' => 'rsi', 'Sabra03G0122600' => 'sbr', 'Sabra05G0097400' => 'sbr', 'Sabra12G0064100' => 'sbr', 'Sabra15G0121300' => 'sbr', 'SalBow2G0642' => 'sbo', 'SalBow5G2667' => 'sbo', 'SalBow5G4873' => 'sbo', 'SalBow8G2395' => 'sbo', 'Sc03g0003290' => 'sci', 'Sc10g0010130' => 'sci', 'Sc22g0003650' => 'sci', 'Sed0001603' => 'sed', 'Sed0004259' => 'sed', 'Sed0006789' => 'sed', 'Sed0011838' => 'sed', 'Sed0012964' => 'sed', 'Sed0016383' => 'sed', 'Sed0019010' => 'sed', 'Sed0020188' => 'sed', 'SEGI_04702' => 'sgi', 'SEGI_17231' => 'sgi', 'SEGI_18877' => 'sgi', 'SEGI_25196' => 'sgi', 'SEGI_25515' => 'sgi', 'SEGI_28445' => 'sgi', 'SEGI_37452' => 'sgi', 'SGA_v2.0_scaffold188G40336' => 'sas', 'SGA_v2.0_scaffold228G43247' => 'sas', 'SGA_v2.0_scaffold280G46853' => 'sas', 'SGA_v2.0_scaffold34G13808' => 'sas', 'SGA_v2.0_scaffold40G15576' => 'sas', 'SGA_v2.0_scaffold611G53188' => 'sas', 'SGA_v2.0_scaffold78G25461' => 'sas', 'SGA_v2.0_scaffold90G27888' => 'sas', 'SHI08601' => 'shi', 'SHI08606' => 'shi', 'SHI17117' => 'shi', 'SHI17119' => 'shi', 'SMO118G0201' => 'smo', 'SMO169G0247' => 'smo', 'SMO176G0006' => 'smo', 'SMO176G0015' => 'smo', 'SMO202G0006' => 'smo', 'SMO240G0050' => 'smo', 'SMO286G0009' => 'smo', 'SMO338G0033' => 'smo', 'SMO356G0533' => 'smo', 'SMO364G0382' => 'smo', 'SMO367G0166' => 'smo', 'SMO367G1098' => 'smo', 'Solyc01g009920.3' => 'sly', 'Solyc01g099300.3' => 'sly', 'Solyc02g084700.3' => 'sly', 'Solyc03g097520.3' => 'sly', 'Solyc06g071580.3' => 'sly', 'Solyc10g081760.3' => 'sly', 'Sopen01g005480' => 'spe', 'Sopen01g042850' => 'spe', 'Sopen02g029370' => 'spe', 'Sopen03g028280' => 'spe', 'Sopen06g027870' => 'spe', 'Sopen10g032270' => 'spe', 'Sp5g18180' => 'spa', 'Sp6g12880' => 'spa', 'Sp6g30850' => 'spa', 'Sp7g22960' => 'spa', 'Sp7g34010' => 'spa', 'SpUn1326_0010' => 'spa', 'TAR371G0242' => 'tar', 'TAR622G0638' => 'tar', 'TAR628G1548' => 'tar', 'TAR629G1079' => 'tar', 'TAR629G3413' => 'tar', 'THA.LOC104804249' => 'tha', 'THA.LOC104808315' => 'tha', 'THA.LOC104809238' => 'tha', 'THA.LOC104825484' => 'tha', 'Thecc.01G025500' => 'tca', 'Thecc.03G015800' => 'tca', 'Thecc.03G018000' => 'tca', 'Thecc.03G134800' => 'tca', 'Thecc.04G014700' => 'tca', 'Thhalv10006991m.g' => 'esa', 'Thhalv10012707m.g' => 'esa', 'Thhalv10015739m.g' => 'esa', 'Thhalv10024553m.g' => 'esa', 'Thhalv10024673m.g' => 'esa', 'Thhalv10029187m.g' => 'esa', 'TPR.G12971' => 'tpr', 'TPR.G29396' => 'tpr', 'TPR.G33376' => 'tpr', 'TPR.G35508' => 'tpr', 'TPR.G35516' => 'tpr', 'TPR.G37317' => 'tpr', 'TPR.G37389' => 'tpr', 'TPR.G37523' => 'tpr', 'TPR.G559' => 'tpr', 'TWI14G0070' => 'twi', 'TWI14G0729' => 'twi', 'TWI18G0596' => 'twi', 'TWI39G0780' => 'twi', 'TWI39G0850' => 'twi', 'TWI73G1052' => 'twi', 'unitig_52.g17485' => 'ugi', 'unitig_61.g26355' => 'ugi', 'vmacro01040' => 'vma', 'vmacro16731' => 'vma', 'vmacro18270' => 'vma', 'vmacro19142' => 'vma', 'vmacro19407' => 'vma', 'vmacro19408' => 'vma', 'vmacro21899' => 'vma', 'vmacro21900' => 'vma', 'vmacro21901' => 'vma', 'VMungo0251G0490' => 'vmu', 'VMungo0251G1748' => 'vmu', 'VMungo1309G0421' => 'vmu', 'Zm00001eb086500' => 'zma', 'Zm00001eb150680' => 'zma', 'Zm00001eb162330' => 'zma', 'Zm00001eb203130' => 'zma', 'Zm00001eb369480' => 'zma', 'Zm00001eb382340' => 'zma', 'Zm00001eb416360' => 'zma' ) $gf_id = 'HOM05D000902' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000902' ) $data_identifier = 'HOM05D000902' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 13, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 10, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 6, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 9, 'hma' => (int) 12, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 4, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 6, 'ppa' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 6, 'rch' => (int) 9, 'rsi' => (int) 9, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 12, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 3, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416360' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000902', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '663', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02470' => 'bna', 'A01p16260' => 'bna', 'A02p01680' => 'bna', 'A03p16600' => 'bna', 'A03p55660' => 'bna', 'A03p64160' => 'bna', 'A03p64170' => 'bna', 'A08p31900' => 'bna', 'A09p59530' => 'bna', 'A10p08230' => 'bna', 'A10p25090' => 'bna', 'Aa31LG3G7100' => 'aar', 'Aa31LG3G7110' => 'aar', 'Aa31LG6G13160' => 'aar', 'Aa31LG7G10770' => 'aar', 'Aa31LG7G3830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2723' => 'aag', 'Actinidia08045' => 'ach', 'Actinidia08888' => 'ach', 'Actinidia18333' => 'ach', 'Actinidia19334' => 'ach', 'Actinidia25552' => 'ach', 'Actinidia26089' => 'ach', 'Actinidia30615' => 'ach', 'Actinidia30616' => 'ach', 'Actinidia33083' => 'ach', 'Actinidia35762' => 'ach', 'Ah.02g110620' => 'amhyb', 'Ah.11g046390' => 'amhyb', 'AL1G31670' => 'aly', 'AL6G23730' => 'aly', 'AL7G14740' => 'aly', 'AL7G14750' => 'aly', 'AL7G14760' => 'aly', 'AL7G28220' => 'aly', 'AL8G24940' => 'aly', 'Aqoxy3G01665' => 'aox', 'Aqoxy3G02853' => 'aox', 'Aqoxy5G01513' => 'aox', 'Aqoxy5G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8SKA4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ75LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKDA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0LJZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7REX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZP4YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWX7I5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2QKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS0L9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPCD8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q161UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC7XCF' => 'arhy', 'AT1G19100' => 'ath', 'AT4G24970' => 'ath', 'AT4G36270' => 'ath', 'AT4G36280' => 'ath', 'AT4G36290' => 'ath', 'AT5G13130' => 'ath', 'AT5G50780' => 'ath', 'ATR0582G266' => 'atr', 'ATR0661G195' => 'atr', 'ATR1152G031' => 'atr', 'Atru.chr11.2382' => 'acertr', 'Atru.chr12.2337' => 'acertr', 'Atru.chr3.744' => 'acertr', 'Atru.chr6.1870' => 'acertr', 'Atru.chr9.2515' => 'acertr', 'AUR62004120' => 'cqu', 'AUR62005667' => 'cqu', 'AUR62007634' => 'cqu', 'AUR62008186' => 'cqu', 'AUR62008187' => 'cqu', 'AUR62008188' => 'cqu', 'AUR62027954' => 'cqu', 'AUR62028766' => 'cqu', 'AUR62028767' => 'cqu', 'AUR62028768' => 'cqu', 'AUR62028886' => 'cqu', 'AUR62029563' => 'cqu', 'AUR62038832' => 'cqu', 'BcaB01g04149' => 'bca', 'BcaB03g12940' => 'bca', 'BcaB03g13090' => 'bca', 'BcaB03g14466' => 'bca', 'BcaB05g24035' => 'bca', 'BcaC01g06050' => 'bca', 'BcaC04g19148' => 'bca', 'BcaC04g20761' => 'bca', 'BcaC06g32845' => 'bca', 'BcaC07g41274' => 'bca', 'BcaC09g50827' => 'bca', 'BcaNung00741' => 'bca', 'BcaNung00742' => 'bca', 'BcaNung01859' => 'bca', 'BcaNung03985' => 'bca', 'BcaNung03989' => 'bca', 'BcaNung05661' => 'bca', 'BolC1t00257H' => 'bol', 'BolC1t01956H' => 'bol', 'BolC2t06534H' => 'bol', 'BolC3t14334H' => 'bol', 'BolC5t30451H' => 'bol', 'BolC7t45880H' => 'bol', 'BolC7t46586H' => 'bol', 'BolC8t49301H' => 'bol', 'BolC8t51837H' => 'bol', 'BolC9t56822H' => 'bol', 'BolC9t59235H' => 'bol', 'BraA01t00234Z' => 'bra', 'BraA01t01563Z' => 'bra', 'BraA02t05147Z' => 'bra', 'BraA03t10947Z' => 'bra', 'BraA03t14633Z' => 'bra', 'BraA08t35112Z' => 'bra', 'BraA09t41330Z' => 'bra', 'BraA10t44570Z' => 'bra', 'C01p02670' => 'bna', 'C01p20260' => 'bna', 'C02p05890' => 'bna', 'C03p19530' => 'bna', 'C05p17470' => 'bna', 'C07p53900' => 'bna', 'C07p61630' => 'bna', 'C08p16800' => 'bna', 'C08p42810' => 'bna', 'C09p39480' => 'bna', 'C09p63980' => 'bna', 'CAN.G1001.7' => 'can', 'CAN.G1034.55' => 'can', 'CAN.G143.7' => 'can', 'CAN.G3340.1' => 'can', 'CAN.G358.19' => 'can', 'CAN.G373.2' => 'can', 'CAN.G674.16' => 'can', 'CAN.G674.17' => 'can', 'CAN.G674.18' => 'can', 'CAN.G732.2' => 'can', 'CAN.G732.3' => 'can', 'CAN.G993.39' => 'can', 'CANSAT01G2052' => 'cansat', 'CANSAT80G0070' => 'cansat', 'CANSAT80G0483' => 'cansat', 'CANSAT80G0625' => 'cansat', 'CARHR019690' => 'chi', 'CARHR080280' => 'chi', 'CARHR152750' => 'chi', 'CARHR152760' => 'chi', 'CARHR152770' => 'chi', 'CARHR200340' => 'chi', 'CARHR232370' => 'chi', 'CARHR244670' => 'chi', 'CARHR244680' => 'chi', 'CARHR257520' => 'chi', 'Carub.0001s1872' => 'cru', 'Carub.0006s1130' => 'cru', 'Carub.0007s0396' => 'cru', 'Carub.0007s0397' => 'cru', 'Carub.0007s1608' => 'cru', 'Carub.0008s1068' => 'cru', 'Carub.0008s1077' => 'cru', 'Ca_16158_v3' => 'car', 'Ca_17571_v3' => 'car', 'Ca_21936_v3' => 'car', 'Ca_22350_v3' => 'car', 'CBR_g22445' => 'cbr', 'CBR_g26290' => 'cbr', 'Cc04_g09610' => 'ccan', 'Cc04_g12280' => 'ccan', 'Cc07_g10230' => 'ccan', 'CDE02G0093' => 'cde', 'CDE02G0701' => 'cde', 'CDE04G1050' => 'cde', 'CDE05G1833' => 'cde', 'CDE05G3058' => 'cde', 'CDE05G3380' => 'cde', 'CDE06G0536' => 'cde', 'Cfa006923' => 'cfa', 'Cfa009402' => 'cfa', 'Cfa018751' => 'cfa', 'Cfa019164' => 'cfa', 'Cfa022935' => 'cfa', 'Ciclev10019081m.g' => 'ccl', 'Ciclev10025076m.g' => 'ccl', 'Ciclev10030712m.g' => 'ccl', 'Ciclev10033760m.g' => 'ccl', 'CiPaw.05G105600' => 'cil', 'CiPaw.08G136700' => 'cil', 'CiPaw.11G003900' => 'cil', 'CiPaw.11G023700' => 'cil', 'CiPaw.12G003700' => 'cil', 'ClCG06G017100' => 'cla', 'ClCG06G018110' => 'cla', 'ClCG07G008800' => 'cla', 'ClCG07G015330' => 'cla', 'COL.COLO4_13698' => 'col', 'COL.COLO4_16659' => 'col', 'COL.COLO4_21986' => 'col', 'COL.COLO4_24049' => 'col', 'COL.COLO4_29061' => 'col', 'COL.COLO4_29075' => 'col', 'COL.COLO4_30094' => 'col', 'Cpa.g.c33689' => 'cpa', 'Cpa.g.sc108.39' => 'cpa', 'Cpa.g.sc108.41' => 'cpa', 'Cpa.g.sc1163.1' => 'cpa', 'Cpa.g.sc4.155' => 'cpa', 'Cpa.g.sc6.194' => 'cpa', 'CsaV3_1G000340' => 'csa', 'CsaV3_1G001400' => 'csa', 'CsaV3_4G002220' => 'csa', 'CsaV3_4G005370' => 'csa', 'CSS0007487' => 'camsi', 'CSS0008066' => 'camsi', 'CSS0009120' => 'camsi', 'CSS0015512' => 'camsi', 'CSS0022409' => 'camsi', 'CSS0025358' => 'camsi', 'CSS0044547' => 'camsi', 'DCAR_013057' => 'dca', 'DCAR_015058' => 'dca', 'DCAR_016027' => 'dca', 'DCAR_017327' => 'dca', 'DCAR_020743' => 'dca', 'DCAR_026157' => 'dca', 'DCAR_032339' => 'dca', 'DCAR_032340' => 'dca', 'Dinv11200' => 'din', 'Dinv11201' => 'din', 'Dinv20631' => 'din', 'Dinv23182' => 'din', 'Dinv33466' => 'din', 'Dinv33583' => 'din', 'Dinv38565' => 'din', 'Duzib068G0200' => 'dzi', 'Duzib147G0132' => 'dzi', 'Duzib147G0635' => 'dzi', 'Duzib205G1670' => 'dzi', 'Duzib251G0606' => 'dzi', 'ECA232G3336' => 'eca', 'ECA232G3763' => 'eca', 'ECA232G4845' => 'eca', 'ECA234G1607' => 'eca', 'ECA246G0932' => 'eca', 'ECA247G0781' => 'eca', 'ECA247G1932' => 'eca', 'ECA247G2079' => 'eca', 'ECA247G3338' => 'eca', 'ECA247G4115' => 'eca', 'EL10Ac3g06552' => 'bvu', 'EL10Ac5g10721' => 'bvu', 'EL10Ac5g10722' => 'bvu', 'EL10Ac5g10723' => 'bvu', 'EL10Ac5g11361' => 'bvu', 'EL10Ac6g13553' => 'bvu', 'EL10As8g23872' => 'bvu', 'Eucgr.B00250' => 'egr', 'Eucgr.B00251' => 'egr', 'Eucgr.B03533' => 'egr', 'Eucgr.I02381' => 'egr', 'Eucgr.K02700' => 'egr', 'FAN02G0174' => 'fan', 'FAN02G3146' => 'fan', 'FAN04G1672' => 'fan', 'FAN04G2273' => 'fan', 'FAN05G2791' => 'fan', 'FAN05G4035' => 'fan', 'FAN07G0834' => 'fan', 'FAN08G1198' => 'fan', 'FAN09G4182' => 'fan', 'FAN12G0496' => 'fan', 'FAN13G1027' => 'fan', 'FAN13G2951' => 'fan', 'FAN14G0705' => 'fan', 'FAN14G0720' => 'fan', 'FAN17G0201' => 'fan', 'FAN17G2665' => 'fan', 'FAN18G1456' => 'fan', 'FAN18G1525' => 'fan', 'FAN18G3500' => 'fan', 'FAN28G2670' => 'fan', 'FvH4_1g12391' => 'fve', 'FvH4_4g23220' => 'fve', 'FvH4_5g08810' => 'fve', 'FvH4_5g28960' => 'fve', 'FvH4_6g42820' => 'fve', 'FvH4_6g51110' => 'fve', 'Glyma.02G051802' => 'gma', 'Glyma.04G185300' => 'gma', 'Glyma.05G202900' => 'gma', 'Glyma.08G010300' => 'gma', 'Glyma.16G131900' => 'gma', 'Glyma.17G087900' => 'gma', 'Gohir.A07G048600' => 'ghi', 'Gohir.A11G179000' => 'ghi', 'Gohir.A12G140900' => 'ghi', 'Gohir.A12G140950' => 'ghi', 'Gohir.A12G191700' => 'ghi', 'Gohir.A13G086300' => 'ghi', 'Gohir.D07G052900' => 'ghi', 'Gohir.D11G186600' => 'ghi', 'Gohir.D12G145575' => 'ghi', 'Gohir.D12G145650' => 'ghi', 'Gohir.D12G145725' => 'ghi', 'Gohir.D12G194050' => 'ghi', 'Gohir.D13G091800' => 'ghi', 'Gorai.001G055900' => 'gra', 'Gorai.007G198400' => 'gra', 'Gorai.008G157000' => 'gra', 'Gorai.008G157100' => 'gra', 'Gorai.008G208700' => 'gra', 'Gorai.010G138700' => 'gra', 'GSVIVG01000977001' => 'vvi', 'GSVIVG01007708001' => 'vvi', 'GSVIVG01008587001' => 'vvi', 'GSVIVG01018849001' => 'vvi', 'GSVIVG01032432001' => 'vvi', 'HanXRQChr02g0034131' => 'han', 'HanXRQChr02g0035981' => 'han', 'HanXRQChr02g0035991' => 'han', 'HanXRQChr05g0155611' => 'han', 'HanXRQChr05g0155621' => 'han', 'HanXRQChr08g0236501' => 'han', 'HanXRQChr09g0261321' => 'han', 'HanXRQChr09g0272081' => 'han', 'HanXRQChr10g0310741' => 'han', 'HanXRQChr11g0325591' => 'han', 'HanXRQChr12g0385691' => 'han', 'HanXRQChr13g0387801' => 'han', 'HanXRQChr15g0463011' => 'han', 'Haze_03826' => 'cav', 'Haze_03827' => 'cav', 'Haze_07183' => 'cav', 'Haze_07537' => 'cav', 'Haze_07539' => 'cav', 'Haze_12461' => 'cav', 'Haze_16115' => 'cav', 'Haze_16808' => 'cav', 'Haze_18531' => 'cav', 'Hma1.2p1_0046F.1_g026700' => 'hma', 'Hma1.2p1_0046F.1_g026710' => 'hma', 'Hma1.2p1_0168F.1_g074340' => 'hma', 'Hma1.2p1_0266F.1_g107030' => 'hma', 'Hma1.2p1_0266F.1_g107060' => 'hma', 'Hma1.2p1_0275F.1_g110510' => 'hma', 'Hma1.2p1_0592F.1_g185490' => 'hma', 'Hma1.2p1_0592F.1_g185500' => 'hma', 'Hma1.2p1_0592F.1_g185510' => 'hma', 'Hma1.2p1_0592F.1_g185520' => 'hma', 'Hma1.2p1_0592F.1_g185530' => 'hma', 'Hma1.2p1_0818F.1_g223450' => 'hma', 'HPP92_009708' => 'vpl', 'HPP92_009793' => 'vpl', 'HPP92_009796' => 'vpl', 'HPP92_009797' => 'vpl', 'HPP92_014940' => 'vpl', 'HPP92_014988' => 'vpl', 'Hund02463' => 'sun', 'Hund02760' => 'sun', 'Hund05071' => 'sun', 'Hund10108' => 'sun', 'Hund11204' => 'sun', 'Hund14016' => 'sun', 'Hund16464' => 'sun', 'Lalb_Chr09g0333391' => 'lal', 'Lalb_Chr11g0070461' => 'lal', 'Lalb_Chr12g0201671' => 'lal', 'Lalb_Chr13g0297161' => 'lal', 'Lj1g0002823' => 'lja', 'Lj3C1074T6' => 'lonja', 'Lj4A212T28' => 'lonja', 'Lj4g0005516' => 'lja', 'Lj4g0013705' => 'lja', 'Lj4g0027865' => 'lja', 'Lj5C92G16' => 'lonja', 'Lj5C92T12' => 'lonja', 'Lj7C596T3' => 'lonja', 'Lj9A446G59' => 'lonja', 'Lj9A482G21' => 'lonja', 'Lsat_1_v5_gn_1_28261' => 'lsa', 'Lsat_1_v5_gn_1_28281' => 'lsa', 'Lsat_1_v5_gn_1_32721' => 'lsa', 'Lsat_1_v5_gn_4_151760' => 'lsa', 'Lsat_1_v5_gn_4_2120' => 'lsa', 'Lsat_1_v5_gn_4_75761' => 'lsa', 'Lsat_1_v5_gn_5_10920' => 'lsa', 'Manes.02G099900' => 'mes', 'Manes.11G096200' => 'mes', 'Manes.12G007200' => 'mes', 'Manes.14G048300' => 'mes', 'Manes.17G114700' => 'mes', 'Mapoly0002s0070' => 'mpo', 'Mapoly0029s0099' => 'mpo', 'MBI07_g24742_MAGBIO' => 'mbi', 'MBI10_g27988_MAGBIO' => 'mbi', 'MBI11_g13057_MAGBIO' => 'mbi', 'MD02G1137200' => 'mdo', 'MD06G1137200' => 'mdo', 'MD07G1122300' => 'mdo', 'MD09G1078200' => 'mdo', 'MD13G1123700' => 'mdo', 'MD14G1151900' => 'mdo', 'MD17G1030900' => 'mdo', 'MD17G1068200' => 'mdo', 'MD17G1068600' => 'mdo', 'Medtr3g077540' => 'mtr', 'Medtr4g105530' => 'mtr', 'Medtr8g076580' => 'mtr', 'Medtr8g076590' => 'mtr', 'Medtr8g096410' => 'mtr', 'MELO3C016411.2' => 'cme', 'MELO3C017780.2' => 'cme', 'MELO3C022560.2' => 'cme', 'MELO3C026187.2' => 'cme', 'MELO3C026286.2' => 'cme', 'MELO3C032854.2' => 'cme', 'Migut.H02495' => 'egut', 'Migut.I00561' => 'egut', 'Migut.K01015' => 'egut', 'Migut.K01016' => 'egut', 'Migut.L00743' => 'egut', 'Migut.L00744' => 'egut', 'Migut.L00746' => 'egut', 'Migut.L00798' => 'egut', 'Migut.L00799' => 'egut', 'Migut.N02096' => 'egut', 'MSTRG.11259' => 'ama', 'MSTRG.23142' => 'ama', 'MSTRG.2499' => 'ama', 'Nitab4.5_0000003g0730' => 'nta', 'Nitab4.5_0000137g0020' => 'nta', 'Nitab4.5_0000721g0210' => 'nta', 'Nitab4.5_0000723g0050' => 'nta', 'Nitab4.5_0000913g0070' => 'nta', 'Nitab4.5_0001332g0040' => 'nta', 'Nitab4.5_0001771g0050' => 'nta', 'Nitab4.5_0001918g0050' => 'nta', 'Nitab4.5_0002686g0030' => 'nta', 'Nitab4.5_0003156g0020' => 'nta', 'Nitab4.5_0003383g0040' => 'nta', 'Nitab4.5_0003918g0010' => 'nta', 'Nitab4.5_0006760g0010' => 'nta', 'Nn1g05981' => 'nnu', 'Nn1g06288' => 'nnu', 'Nn3g16371' => 'nnu', 'Nn3g16786' => 'nnu', 'Nn4g22232' => 'nnu', 'Oeu005144.1' => 'oeu', 'Oeu005145.1' => 'oeu', 'Oeu011348.1' => 'oeu', 'Oeu016415.1' => 'oeu', 'Oeu023501.1' => 'oeu', 'Oeu044473.1' => 'oeu', 'Oeu048892.2' => 'oeu', 'Os01g0549200' => 'osa', 'Os02g0469300' => 'osa', 'Os04g0311100' => 'osa', 'Os06g0474900' => 'osa', 'Os10g0181700' => 'osa', 'Os11g0454800' => 'osa', 'Peaxi162Scf00037g00714' => 'pax', 'Peaxi162Scf00084g01217' => 'pax', 'Peaxi162Scf00257g00217' => 'pax', 'Peaxi162Scf00516g00215' => 'pax', 'Peaxi162Scf00689g00123' => 'pax', 'PGR044G2719' => 'pgr', 'PGR083G1360' => 'pgr', 'PGR102G2849' => 'pgr', 'PGR119G2534' => 'pgr', 'PGSC0003DMG400003538' => 'stu', 'PGSC0003DMG400028138' => 'stu', 'PGSC0003DMG400031732' => 'stu', 'PGSC0003DMG400038165' => 'stu', 'Phvul.002G284600' => 'pvu', 'Phvul.003G258200' => 'pvu', 'Phvul.009G176500' => 'pvu', 'Potri.003G167201' => 'ptr', 'Potri.005G118400' => 'ptr', 'Potri.012G089000' => 'ptr', 'Potri.012G102800' => 'ptr', 'Potri.015G079400' => 'ptr', 'Potri.015G100900' => 'ptr', 'Pp3c14_9810' => 'ppa', 'Pp3c15_10450' => 'ppa', 'Pp3c20_19150' => 'ppa', 'Pp3c23_12740' => 'ppa', 'Pp3c23_6310' => 'ppa', 'Pp3c24_3720' => 'ppa', 'Pp3c27_2580' => 'ppa', 'Pp3c9_8990' => 'ppa', 'PRCOL_00002854' => 'pco', 'Prupe.1G221200' => 'ppe', 'Prupe.3G289000' => 'ppe', 'Prupe.5G147000' => 'ppe', 'Prupe.6G157300' => 'ppe', 'Prupe.7G163400' => 'ppe', 'Psat0s2177g0040' => 'psa', 'Psat3g174760' => 'psa', 'Psat3g192160' => 'psa', 'Psat4g058520' => 'psa', 'Psat4g096840' => 'psa', 'Psat7g037320' => 'psa', 'PSO017G1274' => 'pso', 'PSO017G5166' => 'pso', 'PSO063G4558' => 'pso', 'PSO170G4458' => 'pso', 'PSO170G5005' => 'pso', 'PSO210G6156' => 'pso', 'PSO210G6635' => 'pso', 'PSO210G7397' => 'pso', 'PSO210G7700' => 'pso', 'PSO455G0035' => 'pso', 'PSO455G0180' => 'pso', 'PSO478G4515' => 'pso', 'PSO832G1305' => 'pso', 'PSO832G3489' => 'pso', 'QL02p075247' => 'qlo', 'QL03p051148' => 'qlo', 'QL05p010313' => 'qlo', 'QL06p034627' => 'qlo', 'QL10p001889' => 'qlo', 'QL10p010846' => 'qlo', 'RcHm_v2.0_Chr1g0350621' => 'rch', 'RcHm_v2.0_Chr1g0350641' => 'rch', 'RcHm_v2.0_Chr2g0092891' => 'rch', 'RcHm_v2.0_Chr2g0100251' => 'rch', 'RcHm_v2.0_Chr2g0158661' => 'rch', 'RcHm_v2.0_Chr2g0172741' => 'rch', 'RcHm_v2.0_Chr4g0429571' => 'rch', 'RcHm_v2.0_Chr5g0042471' => 'rch', 'RcHm_v2.0_Chr7g0189451' => 'rch', 'Rhsim08G0052000' => 'rsi', 'Rhsim08G0174400' => 'rsi', 'Rhsim08G0193200' => 'rsi', 'Rhsim10G0214800' => 'rsi', 'Rhsim10G0214900' => 'rsi', 'Rhsim10G0215000' => 'rsi', 'Rhsim12G0022900' => 'rsi', 'Rhsim12G0177500' => 'rsi', 'Rhsim12G0177700' => 'rsi', 'Sabra03G0122600' => 'sbr', 'Sabra05G0097400' => 'sbr', 'Sabra12G0064100' => 'sbr', 'Sabra15G0121300' => 'sbr', 'SalBow2G0642' => 'sbo', 'SalBow5G2667' => 'sbo', 'SalBow5G4873' => 'sbo', 'SalBow8G2395' => 'sbo', 'Sc03g0003290' => 'sci', 'Sc10g0010130' => 'sci', 'Sc22g0003650' => 'sci', 'Sed0001603' => 'sed', 'Sed0004259' => 'sed', 'Sed0006789' => 'sed', 'Sed0011838' => 'sed', 'Sed0012964' => 'sed', 'Sed0016383' => 'sed', 'Sed0019010' => 'sed', 'Sed0020188' => 'sed', 'SEGI_04702' => 'sgi', 'SEGI_17231' => 'sgi', 'SEGI_18877' => 'sgi', 'SEGI_25196' => 'sgi', 'SEGI_25515' => 'sgi', 'SEGI_28445' => 'sgi', 'SEGI_37452' => 'sgi', 'SGA_v2.0_scaffold188G40336' => 'sas', 'SGA_v2.0_scaffold228G43247' => 'sas', 'SGA_v2.0_scaffold280G46853' => 'sas', 'SGA_v2.0_scaffold34G13808' => 'sas', 'SGA_v2.0_scaffold40G15576' => 'sas', 'SGA_v2.0_scaffold611G53188' => 'sas', 'SGA_v2.0_scaffold78G25461' => 'sas', 'SGA_v2.0_scaffold90G27888' => 'sas', 'SHI08601' => 'shi', 'SHI08606' => 'shi', 'SHI17117' => 'shi', 'SHI17119' => 'shi', 'SMO118G0201' => 'smo', 'SMO169G0247' => 'smo', 'SMO176G0006' => 'smo', 'SMO176G0015' => 'smo', 'SMO202G0006' => 'smo', 'SMO240G0050' => 'smo', 'SMO286G0009' => 'smo', 'SMO338G0033' => 'smo', 'SMO356G0533' => 'smo', 'SMO364G0382' => 'smo', 'SMO367G0166' => 'smo', 'SMO367G1098' => 'smo', 'Solyc01g009920.3' => 'sly', 'Solyc01g099300.3' => 'sly', 'Solyc02g084700.3' => 'sly', 'Solyc03g097520.3' => 'sly', 'Solyc06g071580.3' => 'sly', 'Solyc10g081760.3' => 'sly', 'Sopen01g005480' => 'spe', 'Sopen01g042850' => 'spe', 'Sopen02g029370' => 'spe', 'Sopen03g028280' => 'spe', 'Sopen06g027870' => 'spe', 'Sopen10g032270' => 'spe', 'Sp5g18180' => 'spa', 'Sp6g12880' => 'spa', 'Sp6g30850' => 'spa', 'Sp7g22960' => 'spa', 'Sp7g34010' => 'spa', 'SpUn1326_0010' => 'spa', 'TAR371G0242' => 'tar', 'TAR622G0638' => 'tar', 'TAR628G1548' => 'tar', 'TAR629G1079' => 'tar', 'TAR629G3413' => 'tar', 'THA.LOC104804249' => 'tha', 'THA.LOC104808315' => 'tha', 'THA.LOC104809238' => 'tha', 'THA.LOC104825484' => 'tha', 'Thecc.01G025500' => 'tca', 'Thecc.03G015800' => 'tca', 'Thecc.03G018000' => 'tca', 'Thecc.03G134800' => 'tca', 'Thecc.04G014700' => 'tca', 'Thhalv10006991m.g' => 'esa', 'Thhalv10012707m.g' => 'esa', 'Thhalv10015739m.g' => 'esa', 'Thhalv10024553m.g' => 'esa', 'Thhalv10024673m.g' => 'esa', 'Thhalv10029187m.g' => 'esa', 'TPR.G12971' => 'tpr', 'TPR.G29396' => 'tpr', 'TPR.G33376' => 'tpr', 'TPR.G35508' => 'tpr', 'TPR.G35516' => 'tpr', 'TPR.G37317' => 'tpr', 'TPR.G37389' => 'tpr', 'TPR.G37523' => 'tpr', 'TPR.G559' => 'tpr', 'TWI14G0070' => 'twi', 'TWI14G0729' => 'twi', 'TWI18G0596' => 'twi', 'TWI39G0780' => 'twi', 'TWI39G0850' => 'twi', 'TWI73G1052' => 'twi', 'unitig_52.g17485' => 'ugi', 'unitig_61.g26355' => 'ugi', 'vmacro01040' => 'vma', 'vmacro16731' => 'vma', 'vmacro18270' => 'vma', 'vmacro19142' => 'vma', 'vmacro19407' => 'vma', 'vmacro19408' => 'vma', 'vmacro21899' => 'vma', 'vmacro21900' => 'vma', 'vmacro21901' => 'vma', 'VMungo0251G0490' => 'vmu', 'VMungo0251G1748' => 'vmu', 'VMungo1309G0421' => 'vmu', 'Zm00001eb086500' => 'zma', 'Zm00001eb150680' => 'zma', 'Zm00001eb162330' => 'zma', 'Zm00001eb203130' => 'zma', 'Zm00001eb369480' => 'zma', 'Zm00001eb382340' => 'zma', 'Zm00001eb416360' => 'zma' ), 'gf_id' => 'HOM05D000902', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000902' ), 'data_identifier' => 'HOM05D000902', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000902', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '663', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02470' => 'bna', 'A01p16260' => 'bna', 'A02p01680' => 'bna', 'A03p16600' => 'bna', 'A03p55660' => 'bna', 'A03p64160' => 'bna', 'A03p64170' => 'bna', 'A08p31900' => 'bna', 'A09p59530' => 'bna', 'A10p08230' => 'bna', 'A10p25090' => 'bna', 'Aa31LG3G7100' => 'aar', 'Aa31LG3G7110' => 'aar', 'Aa31LG6G13160' => 'aar', 'Aa31LG7G10770' => 'aar', 'Aa31LG7G3830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2723' => 'aag', 'Actinidia08045' => 'ach', 'Actinidia08888' => 'ach', 'Actinidia18333' => 'ach', 'Actinidia19334' => 'ach', 'Actinidia25552' => 'ach', 'Actinidia26089' => 'ach', 'Actinidia30615' => 'ach', 'Actinidia30616' => 'ach', 'Actinidia33083' => 'ach', 'Actinidia35762' => 'ach', 'Ah.02g110620' => 'amhyb', 'Ah.11g046390' => 'amhyb', 'AL1G31670' => 'aly', 'AL6G23730' => 'aly', 'AL7G14740' => 'aly', 'AL7G14750' => 'aly', 'AL7G14760' => 'aly', 'AL7G28220' => 'aly', 'AL8G24940' => 'aly', 'Aqoxy3G01665' => 'aox', 'Aqoxy3G02853' => 'aox', 'Aqoxy5G01513' => 'aox', 'Aqoxy5G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8SKA4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ75LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKDA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0LJZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7REX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZP4YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWX7I5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2QKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS0L9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPCD8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q161UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC7XCF' => 'arhy', 'AT1G19100' => 'ath', 'AT4G24970' => 'ath', 'AT4G36270' => 'ath', 'AT4G36280' => 'ath', 'AT4G36290' => 'ath', 'AT5G13130' => 'ath', 'AT5G50780' => 'ath', 'ATR0582G266' => 'atr', 'ATR0661G195' => 'atr', 'ATR1152G031' => 'atr', 'Atru.chr11.2382' => 'acertr', 'Atru.chr12.2337' => 'acertr', 'Atru.chr3.744' => 'acertr', 'Atru.chr6.1870' => 'acertr', 'Atru.chr9.2515' => 'acertr', 'AUR62004120' => 'cqu', 'AUR62005667' => 'cqu', 'AUR62007634' => 'cqu', 'AUR62008186' => 'cqu', 'AUR62008187' => 'cqu', 'AUR62008188' => 'cqu', 'AUR62027954' => 'cqu', 'AUR62028766' => 'cqu', 'AUR62028767' => 'cqu', 'AUR62028768' => 'cqu', 'AUR62028886' => 'cqu', 'AUR62029563' => 'cqu', 'AUR62038832' => 'cqu', 'BcaB01g04149' => 'bca', 'BcaB03g12940' => 'bca', 'BcaB03g13090' => 'bca', 'BcaB03g14466' => 'bca', 'BcaB05g24035' => 'bca', 'BcaC01g06050' => 'bca', 'BcaC04g19148' => 'bca', 'BcaC04g20761' => 'bca', 'BcaC06g32845' => 'bca', 'BcaC07g41274' => 'bca', 'BcaC09g50827' => 'bca', 'BcaNung00741' => 'bca', 'BcaNung00742' => 'bca', 'BcaNung01859' => 'bca', 'BcaNung03985' => 'bca', 'BcaNung03989' => 'bca', 'BcaNung05661' => 'bca', 'BolC1t00257H' => 'bol', 'BolC1t01956H' => 'bol', 'BolC2t06534H' => 'bol', 'BolC3t14334H' => 'bol', 'BolC5t30451H' => 'bol', 'BolC7t45880H' => 'bol', 'BolC7t46586H' => 'bol', 'BolC8t49301H' => 'bol', 'BolC8t51837H' => 'bol', 'BolC9t56822H' => 'bol', 'BolC9t59235H' => 'bol', 'BraA01t00234Z' => 'bra', 'BraA01t01563Z' => 'bra', 'BraA02t05147Z' => 'bra', 'BraA03t10947Z' => 'bra', 'BraA03t14633Z' => 'bra', 'BraA08t35112Z' => 'bra', 'BraA09t41330Z' => 'bra', 'BraA10t44570Z' => 'bra', 'C01p02670' => 'bna', 'C01p20260' => 'bna', 'C02p05890' => 'bna', 'C03p19530' => 'bna', 'C05p17470' => 'bna', 'C07p53900' => 'bna', 'C07p61630' => 'bna', 'C08p16800' => 'bna', 'C08p42810' => 'bna', 'C09p39480' => 'bna', 'C09p63980' => 'bna', 'CAN.G1001.7' => 'can', 'CAN.G1034.55' => 'can', 'CAN.G143.7' => 'can', 'CAN.G3340.1' => 'can', 'CAN.G358.19' => 'can', 'CAN.G373.2' => 'can', 'CAN.G674.16' => 'can', 'CAN.G674.17' => 'can', 'CAN.G674.18' => 'can', 'CAN.G732.2' => 'can', 'CAN.G732.3' => 'can', 'CAN.G993.39' => 'can', 'CANSAT01G2052' => 'cansat', 'CANSAT80G0070' => 'cansat', 'CANSAT80G0483' => 'cansat', 'CANSAT80G0625' => 'cansat', 'CARHR019690' => 'chi', 'CARHR080280' => 'chi', 'CARHR152750' => 'chi', 'CARHR152760' => 'chi', 'CARHR152770' => 'chi', 'CARHR200340' => 'chi', 'CARHR232370' => 'chi', 'CARHR244670' => 'chi', 'CARHR244680' => 'chi', 'CARHR257520' => 'chi', 'Carub.0001s1872' => 'cru', 'Carub.0006s1130' => 'cru', 'Carub.0007s0396' => 'cru', 'Carub.0007s0397' => 'cru', 'Carub.0007s1608' => 'cru', 'Carub.0008s1068' => 'cru', 'Carub.0008s1077' => 'cru', 'Ca_16158_v3' => 'car', 'Ca_17571_v3' => 'car', 'Ca_21936_v3' => 'car', 'Ca_22350_v3' => 'car', 'CBR_g22445' => 'cbr', 'CBR_g26290' => 'cbr', 'Cc04_g09610' => 'ccan', 'Cc04_g12280' => 'ccan', 'Cc07_g10230' => 'ccan', 'CDE02G0093' => 'cde', 'CDE02G0701' => 'cde', 'CDE04G1050' => 'cde', 'CDE05G1833' => 'cde', 'CDE05G3058' => 'cde', 'CDE05G3380' => 'cde', 'CDE06G0536' => 'cde', 'Cfa006923' => 'cfa', 'Cfa009402' => 'cfa', 'Cfa018751' => 'cfa', 'Cfa019164' => 'cfa', 'Cfa022935' => 'cfa', 'Ciclev10019081m.g' => 'ccl', 'Ciclev10025076m.g' => 'ccl', 'Ciclev10030712m.g' => 'ccl', 'Ciclev10033760m.g' => 'ccl', 'CiPaw.05G105600' => 'cil', 'CiPaw.08G136700' => 'cil', 'CiPaw.11G003900' => 'cil', 'CiPaw.11G023700' => 'cil', 'CiPaw.12G003700' => 'cil', 'ClCG06G017100' => 'cla', 'ClCG06G018110' => 'cla', 'ClCG07G008800' => 'cla', 'ClCG07G015330' => 'cla', 'COL.COLO4_13698' => 'col', 'COL.COLO4_16659' => 'col', 'COL.COLO4_21986' => 'col', 'COL.COLO4_24049' => 'col', 'COL.COLO4_29061' => 'col', 'COL.COLO4_29075' => 'col', 'COL.COLO4_30094' => 'col', 'Cpa.g.c33689' => 'cpa', 'Cpa.g.sc108.39' => 'cpa', 'Cpa.g.sc108.41' => 'cpa', 'Cpa.g.sc1163.1' => 'cpa', 'Cpa.g.sc4.155' => 'cpa', 'Cpa.g.sc6.194' => 'cpa', 'CsaV3_1G000340' => 'csa', 'CsaV3_1G001400' => 'csa', 'CsaV3_4G002220' => 'csa', 'CsaV3_4G005370' => 'csa', 'CSS0007487' => 'camsi', 'CSS0008066' => 'camsi', 'CSS0009120' => 'camsi', 'CSS0015512' => 'camsi', 'CSS0022409' => 'camsi', 'CSS0025358' => 'camsi', 'CSS0044547' => 'camsi', 'DCAR_013057' => 'dca', 'DCAR_015058' => 'dca', 'DCAR_016027' => 'dca', 'DCAR_017327' => 'dca', 'DCAR_020743' => 'dca', 'DCAR_026157' => 'dca', 'DCAR_032339' => 'dca', 'DCAR_032340' => 'dca', 'Dinv11200' => 'din', 'Dinv11201' => 'din', 'Dinv20631' => 'din', 'Dinv23182' => 'din', 'Dinv33466' => 'din', 'Dinv33583' => 'din', 'Dinv38565' => 'din', 'Duzib068G0200' => 'dzi', 'Duzib147G0132' => 'dzi', 'Duzib147G0635' => 'dzi', 'Duzib205G1670' => 'dzi', 'Duzib251G0606' => 'dzi', 'ECA232G3336' => 'eca', 'ECA232G3763' => 'eca', 'ECA232G4845' => 'eca', 'ECA234G1607' => 'eca', 'ECA246G0932' => 'eca', 'ECA247G0781' => 'eca', 'ECA247G1932' => 'eca', 'ECA247G2079' => 'eca', 'ECA247G3338' => 'eca', 'ECA247G4115' => 'eca', 'EL10Ac3g06552' => 'bvu', 'EL10Ac5g10721' => 'bvu', 'EL10Ac5g10722' => 'bvu', 'EL10Ac5g10723' => 'bvu', 'EL10Ac5g11361' => 'bvu', 'EL10Ac6g13553' => 'bvu', 'EL10As8g23872' => 'bvu', 'Eucgr.B00250' => 'egr', 'Eucgr.B00251' => 'egr', 'Eucgr.B03533' => 'egr', 'Eucgr.I02381' => 'egr', 'Eucgr.K02700' => 'egr', 'FAN02G0174' => 'fan', 'FAN02G3146' => 'fan', 'FAN04G1672' => 'fan', 'FAN04G2273' => 'fan', 'FAN05G2791' => 'fan', 'FAN05G4035' => 'fan', 'FAN07G0834' => 'fan', 'FAN08G1198' => 'fan', 'FAN09G4182' => 'fan', 'FAN12G0496' => 'fan', 'FAN13G1027' => 'fan', 'FAN13G2951' => 'fan', 'FAN14G0705' => 'fan', 'FAN14G0720' => 'fan', 'FAN17G0201' => 'fan', 'FAN17G2665' => 'fan', 'FAN18G1456' => 'fan', 'FAN18G1525' => 'fan', 'FAN18G3500' => 'fan', 'FAN28G2670' => 'fan', 'FvH4_1g12391' => 'fve', 'FvH4_4g23220' => 'fve', 'FvH4_5g08810' => 'fve', 'FvH4_5g28960' => 'fve', 'FvH4_6g42820' => 'fve', 'FvH4_6g51110' => 'fve', 'Glyma.02G051802' => 'gma', 'Glyma.04G185300' => 'gma', 'Glyma.05G202900' => 'gma', 'Glyma.08G010300' => 'gma', 'Glyma.16G131900' => 'gma', 'Glyma.17G087900' => 'gma', 'Gohir.A07G048600' => 'ghi', 'Gohir.A11G179000' => 'ghi', 'Gohir.A12G140900' => 'ghi', 'Gohir.A12G140950' => 'ghi', 'Gohir.A12G191700' => 'ghi', 'Gohir.A13G086300' => 'ghi', 'Gohir.D07G052900' => 'ghi', 'Gohir.D11G186600' => 'ghi', 'Gohir.D12G145575' => 'ghi', 'Gohir.D12G145650' => 'ghi', 'Gohir.D12G145725' => 'ghi', 'Gohir.D12G194050' => 'ghi', 'Gohir.D13G091800' => 'ghi', 'Gorai.001G055900' => 'gra', 'Gorai.007G198400' => 'gra', 'Gorai.008G157000' => 'gra', 'Gorai.008G157100' => 'gra', 'Gorai.008G208700' => 'gra', 'Gorai.010G138700' => 'gra', 'GSVIVG01000977001' => 'vvi', 'GSVIVG01007708001' => 'vvi', 'GSVIVG01008587001' => 'vvi', 'GSVIVG01018849001' => 'vvi', 'GSVIVG01032432001' => 'vvi', 'HanXRQChr02g0034131' => 'han', 'HanXRQChr02g0035981' => 'han', 'HanXRQChr02g0035991' => 'han', 'HanXRQChr05g0155611' => 'han', 'HanXRQChr05g0155621' => 'han', 'HanXRQChr08g0236501' => 'han', 'HanXRQChr09g0261321' => 'han', 'HanXRQChr09g0272081' => 'han', 'HanXRQChr10g0310741' => 'han', 'HanXRQChr11g0325591' => 'han', 'HanXRQChr12g0385691' => 'han', 'HanXRQChr13g0387801' => 'han', 'HanXRQChr15g0463011' => 'han', 'Haze_03826' => 'cav', 'Haze_03827' => 'cav', 'Haze_07183' => 'cav', 'Haze_07537' => 'cav', 'Haze_07539' => 'cav', 'Haze_12461' => 'cav', 'Haze_16115' => 'cav', 'Haze_16808' => 'cav', 'Haze_18531' => 'cav', 'Hma1.2p1_0046F.1_g026700' => 'hma', 'Hma1.2p1_0046F.1_g026710' => 'hma', 'Hma1.2p1_0168F.1_g074340' => 'hma', 'Hma1.2p1_0266F.1_g107030' => 'hma', 'Hma1.2p1_0266F.1_g107060' => 'hma', 'Hma1.2p1_0275F.1_g110510' => 'hma', 'Hma1.2p1_0592F.1_g185490' => 'hma', 'Hma1.2p1_0592F.1_g185500' => 'hma', 'Hma1.2p1_0592F.1_g185510' => 'hma', 'Hma1.2p1_0592F.1_g185520' => 'hma', 'Hma1.2p1_0592F.1_g185530' => 'hma', 'Hma1.2p1_0818F.1_g223450' => 'hma', 'HPP92_009708' => 'vpl', 'HPP92_009793' => 'vpl', 'HPP92_009796' => 'vpl', 'HPP92_009797' => 'vpl', 'HPP92_014940' => 'vpl', 'HPP92_014988' => 'vpl', 'Hund02463' => 'sun', 'Hund02760' => 'sun', 'Hund05071' => 'sun', 'Hund10108' => 'sun', 'Hund11204' => 'sun', 'Hund14016' => 'sun', 'Hund16464' => 'sun', 'Lalb_Chr09g0333391' => 'lal', 'Lalb_Chr11g0070461' => 'lal', 'Lalb_Chr12g0201671' => 'lal', 'Lalb_Chr13g0297161' => 'lal', 'Lj1g0002823' => 'lja', 'Lj3C1074T6' => 'lonja', 'Lj4A212T28' => 'lonja', 'Lj4g0005516' => 'lja', 'Lj4g0013705' => 'lja', 'Lj4g0027865' => 'lja', 'Lj5C92G16' => 'lonja', 'Lj5C92T12' => 'lonja', 'Lj7C596T3' => 'lonja', 'Lj9A446G59' => 'lonja', 'Lj9A482G21' => 'lonja', 'Lsat_1_v5_gn_1_28261' => 'lsa', 'Lsat_1_v5_gn_1_28281' => 'lsa', 'Lsat_1_v5_gn_1_32721' => 'lsa', 'Lsat_1_v5_gn_4_151760' => 'lsa', 'Lsat_1_v5_gn_4_2120' => 'lsa', 'Lsat_1_v5_gn_4_75761' => 'lsa', 'Lsat_1_v5_gn_5_10920' => 'lsa', 'Manes.02G099900' => 'mes', 'Manes.11G096200' => 'mes', 'Manes.12G007200' => 'mes', 'Manes.14G048300' => 'mes', 'Manes.17G114700' => 'mes', 'Mapoly0002s0070' => 'mpo', 'Mapoly0029s0099' => 'mpo', 'MBI07_g24742_MAGBIO' => 'mbi', 'MBI10_g27988_MAGBIO' => 'mbi', 'MBI11_g13057_MAGBIO' => 'mbi', 'MD02G1137200' => 'mdo', 'MD06G1137200' => 'mdo', 'MD07G1122300' => 'mdo', 'MD09G1078200' => 'mdo', 'MD13G1123700' => 'mdo', 'MD14G1151900' => 'mdo', 'MD17G1030900' => 'mdo', 'MD17G1068200' => 'mdo', 'MD17G1068600' => 'mdo', 'Medtr3g077540' => 'mtr', 'Medtr4g105530' => 'mtr', 'Medtr8g076580' => 'mtr', 'Medtr8g076590' => 'mtr', 'Medtr8g096410' => 'mtr', 'MELO3C016411.2' => 'cme', 'MELO3C017780.2' => 'cme', 'MELO3C022560.2' => 'cme', 'MELO3C026187.2' => 'cme', 'MELO3C026286.2' => 'cme', 'MELO3C032854.2' => 'cme', 'Migut.H02495' => 'egut', 'Migut.I00561' => 'egut', 'Migut.K01015' => 'egut', 'Migut.K01016' => 'egut', 'Migut.L00743' => 'egut', 'Migut.L00744' => 'egut', 'Migut.L00746' => 'egut', 'Migut.L00798' => 'egut', 'Migut.L00799' => 'egut', 'Migut.N02096' => 'egut', 'MSTRG.11259' => 'ama', 'MSTRG.23142' => 'ama', 'MSTRG.2499' => 'ama', 'Nitab4.5_0000003g0730' => 'nta', 'Nitab4.5_0000137g0020' => 'nta', 'Nitab4.5_0000721g0210' => 'nta', 'Nitab4.5_0000723g0050' => 'nta', 'Nitab4.5_0000913g0070' => 'nta', 'Nitab4.5_0001332g0040' => 'nta', 'Nitab4.5_0001771g0050' => 'nta', 'Nitab4.5_0001918g0050' => 'nta', 'Nitab4.5_0002686g0030' => 'nta', 'Nitab4.5_0003156g0020' => 'nta', 'Nitab4.5_0003383g0040' => 'nta', 'Nitab4.5_0003918g0010' => 'nta', 'Nitab4.5_0006760g0010' => 'nta', 'Nn1g05981' => 'nnu', 'Nn1g06288' => 'nnu', 'Nn3g16371' => 'nnu', 'Nn3g16786' => 'nnu', 'Nn4g22232' => 'nnu', 'Oeu005144.1' => 'oeu', 'Oeu005145.1' => 'oeu', 'Oeu011348.1' => 'oeu', 'Oeu016415.1' => 'oeu', 'Oeu023501.1' => 'oeu', 'Oeu044473.1' => 'oeu', 'Oeu048892.2' => 'oeu', 'Os01g0549200' => 'osa', 'Os02g0469300' => 'osa', 'Os04g0311100' => 'osa', 'Os06g0474900' => 'osa', 'Os10g0181700' => 'osa', 'Os11g0454800' => 'osa', 'Peaxi162Scf00037g00714' => 'pax', 'Peaxi162Scf00084g01217' => 'pax', 'Peaxi162Scf00257g00217' => 'pax', 'Peaxi162Scf00516g00215' => 'pax', 'Peaxi162Scf00689g00123' => 'pax', 'PGR044G2719' => 'pgr', 'PGR083G1360' => 'pgr', 'PGR102G2849' => 'pgr', 'PGR119G2534' => 'pgr', 'PGSC0003DMG400003538' => 'stu', 'PGSC0003DMG400028138' => 'stu', 'PGSC0003DMG400031732' => 'stu', 'PGSC0003DMG400038165' => 'stu', 'Phvul.002G284600' => 'pvu', 'Phvul.003G258200' => 'pvu', 'Phvul.009G176500' => 'pvu', 'Potri.003G167201' => 'ptr', 'Potri.005G118400' => 'ptr', 'Potri.012G089000' => 'ptr', 'Potri.012G102800' => 'ptr', 'Potri.015G079400' => 'ptr', 'Potri.015G100900' => 'ptr', 'Pp3c14_9810' => 'ppa', 'Pp3c15_10450' => 'ppa', 'Pp3c20_19150' => 'ppa', 'Pp3c23_12740' => 'ppa', 'Pp3c23_6310' => 'ppa', 'Pp3c24_3720' => 'ppa', 'Pp3c27_2580' => 'ppa', 'Pp3c9_8990' => 'ppa', 'PRCOL_00002854' => 'pco', 'Prupe.1G221200' => 'ppe', 'Prupe.3G289000' => 'ppe', 'Prupe.5G147000' => 'ppe', 'Prupe.6G157300' => 'ppe', 'Prupe.7G163400' => 'ppe', 'Psat0s2177g0040' => 'psa', 'Psat3g174760' => 'psa', 'Psat3g192160' => 'psa', 'Psat4g058520' => 'psa', 'Psat4g096840' => 'psa', 'Psat7g037320' => 'psa', 'PSO017G1274' => 'pso', 'PSO017G5166' => 'pso', 'PSO063G4558' => 'pso', 'PSO170G4458' => 'pso', 'PSO170G5005' => 'pso', 'PSO210G6156' => 'pso', 'PSO210G6635' => 'pso', 'PSO210G7397' => 'pso', 'PSO210G7700' => 'pso', 'PSO455G0035' => 'pso', 'PSO455G0180' => 'pso', 'PSO478G4515' => 'pso', 'PSO832G1305' => 'pso', 'PSO832G3489' => 'pso', 'QL02p075247' => 'qlo', 'QL03p051148' => 'qlo', 'QL05p010313' => 'qlo', 'QL06p034627' => 'qlo', 'QL10p001889' => 'qlo', 'QL10p010846' => 'qlo', 'RcHm_v2.0_Chr1g0350621' => 'rch', 'RcHm_v2.0_Chr1g0350641' => 'rch', 'RcHm_v2.0_Chr2g0092891' => 'rch', 'RcHm_v2.0_Chr2g0100251' => 'rch', 'RcHm_v2.0_Chr2g0158661' => 'rch', 'RcHm_v2.0_Chr2g0172741' => 'rch', 'RcHm_v2.0_Chr4g0429571' => 'rch', 'RcHm_v2.0_Chr5g0042471' => 'rch', 'RcHm_v2.0_Chr7g0189451' => 'rch', 'Rhsim08G0052000' => 'rsi', 'Rhsim08G0174400' => 'rsi', 'Rhsim08G0193200' => 'rsi', 'Rhsim10G0214800' => 'rsi', 'Rhsim10G0214900' => 'rsi', 'Rhsim10G0215000' => 'rsi', 'Rhsim12G0022900' => 'rsi', 'Rhsim12G0177500' => 'rsi', 'Rhsim12G0177700' => 'rsi', 'Sabra03G0122600' => 'sbr', 'Sabra05G0097400' => 'sbr', 'Sabra12G0064100' => 'sbr', 'Sabra15G0121300' => 'sbr', 'SalBow2G0642' => 'sbo', 'SalBow5G2667' => 'sbo', 'SalBow5G4873' => 'sbo', 'SalBow8G2395' => 'sbo', 'Sc03g0003290' => 'sci', 'Sc10g0010130' => 'sci', 'Sc22g0003650' => 'sci', 'Sed0001603' => 'sed', 'Sed0004259' => 'sed', 'Sed0006789' => 'sed', 'Sed0011838' => 'sed', 'Sed0012964' => 'sed', 'Sed0016383' => 'sed', 'Sed0019010' => 'sed', 'Sed0020188' => 'sed', 'SEGI_04702' => 'sgi', 'SEGI_17231' => 'sgi', 'SEGI_18877' => 'sgi', 'SEGI_25196' => 'sgi', 'SEGI_25515' => 'sgi', 'SEGI_28445' => 'sgi', 'SEGI_37452' => 'sgi', 'SGA_v2.0_scaffold188G40336' => 'sas', 'SGA_v2.0_scaffold228G43247' => 'sas', 'SGA_v2.0_scaffold280G46853' => 'sas', 'SGA_v2.0_scaffold34G13808' => 'sas', 'SGA_v2.0_scaffold40G15576' => 'sas', 'SGA_v2.0_scaffold611G53188' => 'sas', 'SGA_v2.0_scaffold78G25461' => 'sas', 'SGA_v2.0_scaffold90G27888' => 'sas', 'SHI08601' => 'shi', 'SHI08606' => 'shi', 'SHI17117' => 'shi', 'SHI17119' => 'shi', 'SMO118G0201' => 'smo', 'SMO169G0247' => 'smo', 'SMO176G0006' => 'smo', 'SMO176G0015' => 'smo', 'SMO202G0006' => 'smo', 'SMO240G0050' => 'smo', 'SMO286G0009' => 'smo', 'SMO338G0033' => 'smo', 'SMO356G0533' => 'smo', 'SMO364G0382' => 'smo', 'SMO367G0166' => 'smo', 'SMO367G1098' => 'smo', 'Solyc01g009920.3' => 'sly', 'Solyc01g099300.3' => 'sly', 'Solyc02g084700.3' => 'sly', 'Solyc03g097520.3' => 'sly', 'Solyc06g071580.3' => 'sly', 'Solyc10g081760.3' => 'sly', 'Sopen01g005480' => 'spe', 'Sopen01g042850' => 'spe', 'Sopen02g029370' => 'spe', 'Sopen03g028280' => 'spe', 'Sopen06g027870' => 'spe', 'Sopen10g032270' => 'spe', 'Sp5g18180' => 'spa', 'Sp6g12880' => 'spa', 'Sp6g30850' => 'spa', 'Sp7g22960' => 'spa', 'Sp7g34010' => 'spa', 'SpUn1326_0010' => 'spa', 'TAR371G0242' => 'tar', 'TAR622G0638' => 'tar', 'TAR628G1548' => 'tar', 'TAR629G1079' => 'tar', 'TAR629G3413' => 'tar', 'THA.LOC104804249' => 'tha', 'THA.LOC104808315' => 'tha', 'THA.LOC104809238' => 'tha', 'THA.LOC104825484' => 'tha', 'Thecc.01G025500' => 'tca', 'Thecc.03G015800' => 'tca', 'Thecc.03G018000' => 'tca', 'Thecc.03G134800' => 'tca', 'Thecc.04G014700' => 'tca', 'Thhalv10006991m.g' => 'esa', 'Thhalv10012707m.g' => 'esa', 'Thhalv10015739m.g' => 'esa', 'Thhalv10024553m.g' => 'esa', 'Thhalv10024673m.g' => 'esa', 'Thhalv10029187m.g' => 'esa', 'TPR.G12971' => 'tpr', 'TPR.G29396' => 'tpr', 'TPR.G33376' => 'tpr', 'TPR.G35508' => 'tpr', 'TPR.G35516' => 'tpr', 'TPR.G37317' => 'tpr', 'TPR.G37389' => 'tpr', 'TPR.G37523' => 'tpr', 'TPR.G559' => 'tpr', 'TWI14G0070' => 'twi', 'TWI14G0729' => 'twi', 'TWI18G0596' => 'twi', 'TWI39G0780' => 'twi', 'TWI39G0850' => 'twi', 'TWI73G1052' => 'twi', 'unitig_52.g17485' => 'ugi', 'unitig_61.g26355' => 'ugi', 'vmacro01040' => 'vma', 'vmacro16731' => 'vma', 'vmacro18270' => 'vma', 'vmacro19142' => 'vma', 'vmacro19407' => 'vma', 'vmacro19408' => 'vma', 'vmacro21899' => 'vma', 'vmacro21900' => 'vma', 'vmacro21901' => 'vma', 'VMungo0251G0490' => 'vmu', 'VMungo0251G1748' => 'vmu', 'VMungo1309G0421' => 'vmu', 'Zm00001eb086500' => 'zma', 'Zm00001eb150680' => 'zma', 'Zm00001eb162330' => 'zma', 'Zm00001eb203130' => 'zma', 'Zm00001eb369480' => 'zma', 'Zm00001eb382340' => 'zma', 'Zm00001eb416360' => 'zma' ) $gf_id = 'HOM05D000902' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000902' ) $data_identifier = 'HOM05D000902' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 13, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 10, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 6, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 9, 'hma' => (int) 12, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 4, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 6, 'ppa' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 6, 'rch' => (int) 9, 'rsi' => (int) 9, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 12, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 3, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416360' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000902', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '663', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02470' => 'bna', 'A01p16260' => 'bna', 'A02p01680' => 'bna', 'A03p16600' => 'bna', 'A03p55660' => 'bna', 'A03p64160' => 'bna', 'A03p64170' => 'bna', 'A08p31900' => 'bna', 'A09p59530' => 'bna', 'A10p08230' => 'bna', 'A10p25090' => 'bna', 'Aa31LG3G7100' => 'aar', 'Aa31LG3G7110' => 'aar', 'Aa31LG6G13160' => 'aar', 'Aa31LG7G10770' => 'aar', 'Aa31LG7G3830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2723' => 'aag', 'Actinidia08045' => 'ach', 'Actinidia08888' => 'ach', 'Actinidia18333' => 'ach', 'Actinidia19334' => 'ach', 'Actinidia25552' => 'ach', 'Actinidia26089' => 'ach', 'Actinidia30615' => 'ach', 'Actinidia30616' => 'ach', 'Actinidia33083' => 'ach', 'Actinidia35762' => 'ach', 'Ah.02g110620' => 'amhyb', 'Ah.11g046390' => 'amhyb', 'AL1G31670' => 'aly', 'AL6G23730' => 'aly', 'AL7G14740' => 'aly', 'AL7G14750' => 'aly', 'AL7G14760' => 'aly', 'AL7G28220' => 'aly', 'AL8G24940' => 'aly', 'Aqoxy3G01665' => 'aox', 'Aqoxy3G02853' => 'aox', 'Aqoxy5G01513' => 'aox', 'Aqoxy5G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8SKA4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ75LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKDA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0LJZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7REX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZP4YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWX7I5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2QKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS0L9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPCD8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q161UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC7XCF' => 'arhy', 'AT1G19100' => 'ath', 'AT4G24970' => 'ath', 'AT4G36270' => 'ath', 'AT4G36280' => 'ath', 'AT4G36290' => 'ath', 'AT5G13130' => 'ath', 'AT5G50780' => 'ath', 'ATR0582G266' => 'atr', 'ATR0661G195' => 'atr', 'ATR1152G031' => 'atr', 'Atru.chr11.2382' => 'acertr', 'Atru.chr12.2337' => 'acertr', 'Atru.chr3.744' => 'acertr', 'Atru.chr6.1870' => 'acertr', 'Atru.chr9.2515' => 'acertr', 'AUR62004120' => 'cqu', 'AUR62005667' => 'cqu', 'AUR62007634' => 'cqu', 'AUR62008186' => 'cqu', 'AUR62008187' => 'cqu', 'AUR62008188' => 'cqu', 'AUR62027954' => 'cqu', 'AUR62028766' => 'cqu', 'AUR62028767' => 'cqu', 'AUR62028768' => 'cqu', 'AUR62028886' => 'cqu', 'AUR62029563' => 'cqu', 'AUR62038832' => 'cqu', 'BcaB01g04149' => 'bca', 'BcaB03g12940' => 'bca', 'BcaB03g13090' => 'bca', 'BcaB03g14466' => 'bca', 'BcaB05g24035' => 'bca', 'BcaC01g06050' => 'bca', 'BcaC04g19148' => 'bca', 'BcaC04g20761' => 'bca', 'BcaC06g32845' => 'bca', 'BcaC07g41274' => 'bca', 'BcaC09g50827' => 'bca', 'BcaNung00741' => 'bca', 'BcaNung00742' => 'bca', 'BcaNung01859' => 'bca', 'BcaNung03985' => 'bca', 'BcaNung03989' => 'bca', 'BcaNung05661' => 'bca', 'BolC1t00257H' => 'bol', 'BolC1t01956H' => 'bol', 'BolC2t06534H' => 'bol', 'BolC3t14334H' => 'bol', 'BolC5t30451H' => 'bol', 'BolC7t45880H' => 'bol', 'BolC7t46586H' => 'bol', 'BolC8t49301H' => 'bol', 'BolC8t51837H' => 'bol', 'BolC9t56822H' => 'bol', 'BolC9t59235H' => 'bol', 'BraA01t00234Z' => 'bra', 'BraA01t01563Z' => 'bra', 'BraA02t05147Z' => 'bra', 'BraA03t10947Z' => 'bra', 'BraA03t14633Z' => 'bra', 'BraA08t35112Z' => 'bra', 'BraA09t41330Z' => 'bra', 'BraA10t44570Z' => 'bra', 'C01p02670' => 'bna', 'C01p20260' => 'bna', 'C02p05890' => 'bna', 'C03p19530' => 'bna', 'C05p17470' => 'bna', 'C07p53900' => 'bna', 'C07p61630' => 'bna', 'C08p16800' => 'bna', 'C08p42810' => 'bna', 'C09p39480' => 'bna', 'C09p63980' => 'bna', 'CAN.G1001.7' => 'can', 'CAN.G1034.55' => 'can', 'CAN.G143.7' => 'can', 'CAN.G3340.1' => 'can', 'CAN.G358.19' => 'can', 'CAN.G373.2' => 'can', 'CAN.G674.16' => 'can', 'CAN.G674.17' => 'can', 'CAN.G674.18' => 'can', 'CAN.G732.2' => 'can', 'CAN.G732.3' => 'can', 'CAN.G993.39' => 'can', 'CANSAT01G2052' => 'cansat', 'CANSAT80G0070' => 'cansat', 'CANSAT80G0483' => 'cansat', 'CANSAT80G0625' => 'cansat', 'CARHR019690' => 'chi', 'CARHR080280' => 'chi', 'CARHR152750' => 'chi', 'CARHR152760' => 'chi', 'CARHR152770' => 'chi', 'CARHR200340' => 'chi', 'CARHR232370' => 'chi', 'CARHR244670' => 'chi', 'CARHR244680' => 'chi', 'CARHR257520' => 'chi', 'Carub.0001s1872' => 'cru', 'Carub.0006s1130' => 'cru', 'Carub.0007s0396' => 'cru', 'Carub.0007s0397' => 'cru', 'Carub.0007s1608' => 'cru', 'Carub.0008s1068' => 'cru', 'Carub.0008s1077' => 'cru', 'Ca_16158_v3' => 'car', 'Ca_17571_v3' => 'car', 'Ca_21936_v3' => 'car', 'Ca_22350_v3' => 'car', 'CBR_g22445' => 'cbr', 'CBR_g26290' => 'cbr', 'Cc04_g09610' => 'ccan', 'Cc04_g12280' => 'ccan', 'Cc07_g10230' => 'ccan', 'CDE02G0093' => 'cde', 'CDE02G0701' => 'cde', 'CDE04G1050' => 'cde', 'CDE05G1833' => 'cde', 'CDE05G3058' => 'cde', 'CDE05G3380' => 'cde', 'CDE06G0536' => 'cde', 'Cfa006923' => 'cfa', 'Cfa009402' => 'cfa', 'Cfa018751' => 'cfa', 'Cfa019164' => 'cfa', 'Cfa022935' => 'cfa', 'Ciclev10019081m.g' => 'ccl', 'Ciclev10025076m.g' => 'ccl', 'Ciclev10030712m.g' => 'ccl', 'Ciclev10033760m.g' => 'ccl', 'CiPaw.05G105600' => 'cil', 'CiPaw.08G136700' => 'cil', 'CiPaw.11G003900' => 'cil', 'CiPaw.11G023700' => 'cil', 'CiPaw.12G003700' => 'cil', 'ClCG06G017100' => 'cla', 'ClCG06G018110' => 'cla', 'ClCG07G008800' => 'cla', 'ClCG07G015330' => 'cla', 'COL.COLO4_13698' => 'col', 'COL.COLO4_16659' => 'col', 'COL.COLO4_21986' => 'col', 'COL.COLO4_24049' => 'col', 'COL.COLO4_29061' => 'col', 'COL.COLO4_29075' => 'col', 'COL.COLO4_30094' => 'col', 'Cpa.g.c33689' => 'cpa', 'Cpa.g.sc108.39' => 'cpa', 'Cpa.g.sc108.41' => 'cpa', 'Cpa.g.sc1163.1' => 'cpa', 'Cpa.g.sc4.155' => 'cpa', 'Cpa.g.sc6.194' => 'cpa', 'CsaV3_1G000340' => 'csa', 'CsaV3_1G001400' => 'csa', 'CsaV3_4G002220' => 'csa', 'CsaV3_4G005370' => 'csa', 'CSS0007487' => 'camsi', 'CSS0008066' => 'camsi', 'CSS0009120' => 'camsi', 'CSS0015512' => 'camsi', 'CSS0022409' => 'camsi', 'CSS0025358' => 'camsi', 'CSS0044547' => 'camsi', 'DCAR_013057' => 'dca', 'DCAR_015058' => 'dca', 'DCAR_016027' => 'dca', 'DCAR_017327' => 'dca', 'DCAR_020743' => 'dca', 'DCAR_026157' => 'dca', 'DCAR_032339' => 'dca', 'DCAR_032340' => 'dca', 'Dinv11200' => 'din', 'Dinv11201' => 'din', 'Dinv20631' => 'din', 'Dinv23182' => 'din', 'Dinv33466' => 'din', 'Dinv33583' => 'din', 'Dinv38565' => 'din', 'Duzib068G0200' => 'dzi', 'Duzib147G0132' => 'dzi', 'Duzib147G0635' => 'dzi', 'Duzib205G1670' => 'dzi', 'Duzib251G0606' => 'dzi', 'ECA232G3336' => 'eca', 'ECA232G3763' => 'eca', 'ECA232G4845' => 'eca', 'ECA234G1607' => 'eca', 'ECA246G0932' => 'eca', 'ECA247G0781' => 'eca', 'ECA247G1932' => 'eca', 'ECA247G2079' => 'eca', 'ECA247G3338' => 'eca', 'ECA247G4115' => 'eca', 'EL10Ac3g06552' => 'bvu', 'EL10Ac5g10721' => 'bvu', 'EL10Ac5g10722' => 'bvu', 'EL10Ac5g10723' => 'bvu', 'EL10Ac5g11361' => 'bvu', 'EL10Ac6g13553' => 'bvu', 'EL10As8g23872' => 'bvu', 'Eucgr.B00250' => 'egr', 'Eucgr.B00251' => 'egr', 'Eucgr.B03533' => 'egr', 'Eucgr.I02381' => 'egr', 'Eucgr.K02700' => 'egr', 'FAN02G0174' => 'fan', 'FAN02G3146' => 'fan', 'FAN04G1672' => 'fan', 'FAN04G2273' => 'fan', 'FAN05G2791' => 'fan', 'FAN05G4035' => 'fan', 'FAN07G0834' => 'fan', 'FAN08G1198' => 'fan', 'FAN09G4182' => 'fan', 'FAN12G0496' => 'fan', 'FAN13G1027' => 'fan', 'FAN13G2951' => 'fan', 'FAN14G0705' => 'fan', 'FAN14G0720' => 'fan', 'FAN17G0201' => 'fan', 'FAN17G2665' => 'fan', 'FAN18G1456' => 'fan', 'FAN18G1525' => 'fan', 'FAN18G3500' => 'fan', 'FAN28G2670' => 'fan', 'FvH4_1g12391' => 'fve', 'FvH4_4g23220' => 'fve', 'FvH4_5g08810' => 'fve', 'FvH4_5g28960' => 'fve', 'FvH4_6g42820' => 'fve', 'FvH4_6g51110' => 'fve', 'Glyma.02G051802' => 'gma', 'Glyma.04G185300' => 'gma', 'Glyma.05G202900' => 'gma', 'Glyma.08G010300' => 'gma', 'Glyma.16G131900' => 'gma', 'Glyma.17G087900' => 'gma', 'Gohir.A07G048600' => 'ghi', 'Gohir.A11G179000' => 'ghi', 'Gohir.A12G140900' => 'ghi', 'Gohir.A12G140950' => 'ghi', 'Gohir.A12G191700' => 'ghi', 'Gohir.A13G086300' => 'ghi', 'Gohir.D07G052900' => 'ghi', 'Gohir.D11G186600' => 'ghi', 'Gohir.D12G145575' => 'ghi', 'Gohir.D12G145650' => 'ghi', 'Gohir.D12G145725' => 'ghi', 'Gohir.D12G194050' => 'ghi', 'Gohir.D13G091800' => 'ghi', 'Gorai.001G055900' => 'gra', 'Gorai.007G198400' => 'gra', 'Gorai.008G157000' => 'gra', 'Gorai.008G157100' => 'gra', 'Gorai.008G208700' => 'gra', 'Gorai.010G138700' => 'gra', 'GSVIVG01000977001' => 'vvi', 'GSVIVG01007708001' => 'vvi', 'GSVIVG01008587001' => 'vvi', 'GSVIVG01018849001' => 'vvi', 'GSVIVG01032432001' => 'vvi', 'HanXRQChr02g0034131' => 'han', 'HanXRQChr02g0035981' => 'han', 'HanXRQChr02g0035991' => 'han', 'HanXRQChr05g0155611' => 'han', 'HanXRQChr05g0155621' => 'han', 'HanXRQChr08g0236501' => 'han', 'HanXRQChr09g0261321' => 'han', 'HanXRQChr09g0272081' => 'han', 'HanXRQChr10g0310741' => 'han', 'HanXRQChr11g0325591' => 'han', 'HanXRQChr12g0385691' => 'han', 'HanXRQChr13g0387801' => 'han', 'HanXRQChr15g0463011' => 'han', 'Haze_03826' => 'cav', 'Haze_03827' => 'cav', 'Haze_07183' => 'cav', 'Haze_07537' => 'cav', 'Haze_07539' => 'cav', 'Haze_12461' => 'cav', 'Haze_16115' => 'cav', 'Haze_16808' => 'cav', 'Haze_18531' => 'cav', 'Hma1.2p1_0046F.1_g026700' => 'hma', 'Hma1.2p1_0046F.1_g026710' => 'hma', 'Hma1.2p1_0168F.1_g074340' => 'hma', 'Hma1.2p1_0266F.1_g107030' => 'hma', 'Hma1.2p1_0266F.1_g107060' => 'hma', 'Hma1.2p1_0275F.1_g110510' => 'hma', 'Hma1.2p1_0592F.1_g185490' => 'hma', 'Hma1.2p1_0592F.1_g185500' => 'hma', 'Hma1.2p1_0592F.1_g185510' => 'hma', 'Hma1.2p1_0592F.1_g185520' => 'hma', 'Hma1.2p1_0592F.1_g185530' => 'hma', 'Hma1.2p1_0818F.1_g223450' => 'hma', 'HPP92_009708' => 'vpl', 'HPP92_009793' => 'vpl', 'HPP92_009796' => 'vpl', 'HPP92_009797' => 'vpl', 'HPP92_014940' => 'vpl', 'HPP92_014988' => 'vpl', 'Hund02463' => 'sun', 'Hund02760' => 'sun', 'Hund05071' => 'sun', 'Hund10108' => 'sun', 'Hund11204' => 'sun', 'Hund14016' => 'sun', 'Hund16464' => 'sun', 'Lalb_Chr09g0333391' => 'lal', 'Lalb_Chr11g0070461' => 'lal', 'Lalb_Chr12g0201671' => 'lal', 'Lalb_Chr13g0297161' => 'lal', 'Lj1g0002823' => 'lja', 'Lj3C1074T6' => 'lonja', 'Lj4A212T28' => 'lonja', 'Lj4g0005516' => 'lja', 'Lj4g0013705' => 'lja', 'Lj4g0027865' => 'lja', 'Lj5C92G16' => 'lonja', 'Lj5C92T12' => 'lonja', 'Lj7C596T3' => 'lonja', 'Lj9A446G59' => 'lonja', 'Lj9A482G21' => 'lonja', 'Lsat_1_v5_gn_1_28261' => 'lsa', 'Lsat_1_v5_gn_1_28281' => 'lsa', 'Lsat_1_v5_gn_1_32721' => 'lsa', 'Lsat_1_v5_gn_4_151760' => 'lsa', 'Lsat_1_v5_gn_4_2120' => 'lsa', 'Lsat_1_v5_gn_4_75761' => 'lsa', 'Lsat_1_v5_gn_5_10920' => 'lsa', 'Manes.02G099900' => 'mes', 'Manes.11G096200' => 'mes', 'Manes.12G007200' => 'mes', 'Manes.14G048300' => 'mes', 'Manes.17G114700' => 'mes', 'Mapoly0002s0070' => 'mpo', 'Mapoly0029s0099' => 'mpo', 'MBI07_g24742_MAGBIO' => 'mbi', 'MBI10_g27988_MAGBIO' => 'mbi', 'MBI11_g13057_MAGBIO' => 'mbi', 'MD02G1137200' => 'mdo', 'MD06G1137200' => 'mdo', 'MD07G1122300' => 'mdo', 'MD09G1078200' => 'mdo', 'MD13G1123700' => 'mdo', 'MD14G1151900' => 'mdo', 'MD17G1030900' => 'mdo', 'MD17G1068200' => 'mdo', 'MD17G1068600' => 'mdo', 'Medtr3g077540' => 'mtr', 'Medtr4g105530' => 'mtr', 'Medtr8g076580' => 'mtr', 'Medtr8g076590' => 'mtr', 'Medtr8g096410' => 'mtr', 'MELO3C016411.2' => 'cme', 'MELO3C017780.2' => 'cme', 'MELO3C022560.2' => 'cme', 'MELO3C026187.2' => 'cme', 'MELO3C026286.2' => 'cme', 'MELO3C032854.2' => 'cme', 'Migut.H02495' => 'egut', 'Migut.I00561' => 'egut', 'Migut.K01015' => 'egut', 'Migut.K01016' => 'egut', 'Migut.L00743' => 'egut', 'Migut.L00744' => 'egut', 'Migut.L00746' => 'egut', 'Migut.L00798' => 'egut', 'Migut.L00799' => 'egut', 'Migut.N02096' => 'egut', 'MSTRG.11259' => 'ama', 'MSTRG.23142' => 'ama', 'MSTRG.2499' => 'ama', 'Nitab4.5_0000003g0730' => 'nta', 'Nitab4.5_0000137g0020' => 'nta', 'Nitab4.5_0000721g0210' => 'nta', 'Nitab4.5_0000723g0050' => 'nta', 'Nitab4.5_0000913g0070' => 'nta', 'Nitab4.5_0001332g0040' => 'nta', 'Nitab4.5_0001771g0050' => 'nta', 'Nitab4.5_0001918g0050' => 'nta', 'Nitab4.5_0002686g0030' => 'nta', 'Nitab4.5_0003156g0020' => 'nta', 'Nitab4.5_0003383g0040' => 'nta', 'Nitab4.5_0003918g0010' => 'nta', 'Nitab4.5_0006760g0010' => 'nta', 'Nn1g05981' => 'nnu', 'Nn1g06288' => 'nnu', 'Nn3g16371' => 'nnu', 'Nn3g16786' => 'nnu', 'Nn4g22232' => 'nnu', 'Oeu005144.1' => 'oeu', 'Oeu005145.1' => 'oeu', 'Oeu011348.1' => 'oeu', 'Oeu016415.1' => 'oeu', 'Oeu023501.1' => 'oeu', 'Oeu044473.1' => 'oeu', 'Oeu048892.2' => 'oeu', 'Os01g0549200' => 'osa', 'Os02g0469300' => 'osa', 'Os04g0311100' => 'osa', 'Os06g0474900' => 'osa', 'Os10g0181700' => 'osa', 'Os11g0454800' => 'osa', 'Peaxi162Scf00037g00714' => 'pax', 'Peaxi162Scf00084g01217' => 'pax', 'Peaxi162Scf00257g00217' => 'pax', 'Peaxi162Scf00516g00215' => 'pax', 'Peaxi162Scf00689g00123' => 'pax', 'PGR044G2719' => 'pgr', 'PGR083G1360' => 'pgr', 'PGR102G2849' => 'pgr', 'PGR119G2534' => 'pgr', 'PGSC0003DMG400003538' => 'stu', 'PGSC0003DMG400028138' => 'stu', 'PGSC0003DMG400031732' => 'stu', 'PGSC0003DMG400038165' => 'stu', 'Phvul.002G284600' => 'pvu', 'Phvul.003G258200' => 'pvu', 'Phvul.009G176500' => 'pvu', 'Potri.003G167201' => 'ptr', 'Potri.005G118400' => 'ptr', 'Potri.012G089000' => 'ptr', 'Potri.012G102800' => 'ptr', 'Potri.015G079400' => 'ptr', 'Potri.015G100900' => 'ptr', 'Pp3c14_9810' => 'ppa', 'Pp3c15_10450' => 'ppa', 'Pp3c20_19150' => 'ppa', 'Pp3c23_12740' => 'ppa', 'Pp3c23_6310' => 'ppa', 'Pp3c24_3720' => 'ppa', 'Pp3c27_2580' => 'ppa', 'Pp3c9_8990' => 'ppa', 'PRCOL_00002854' => 'pco', 'Prupe.1G221200' => 'ppe', 'Prupe.3G289000' => 'ppe', 'Prupe.5G147000' => 'ppe', 'Prupe.6G157300' => 'ppe', 'Prupe.7G163400' => 'ppe', 'Psat0s2177g0040' => 'psa', 'Psat3g174760' => 'psa', 'Psat3g192160' => 'psa', 'Psat4g058520' => 'psa', 'Psat4g096840' => 'psa', 'Psat7g037320' => 'psa', 'PSO017G1274' => 'pso', 'PSO017G5166' => 'pso', 'PSO063G4558' => 'pso', 'PSO170G4458' => 'pso', 'PSO170G5005' => 'pso', 'PSO210G6156' => 'pso', 'PSO210G6635' => 'pso', 'PSO210G7397' => 'pso', 'PSO210G7700' => 'pso', 'PSO455G0035' => 'pso', 'PSO455G0180' => 'pso', 'PSO478G4515' => 'pso', 'PSO832G1305' => 'pso', 'PSO832G3489' => 'pso', 'QL02p075247' => 'qlo', 'QL03p051148' => 'qlo', 'QL05p010313' => 'qlo', 'QL06p034627' => 'qlo', 'QL10p001889' => 'qlo', 'QL10p010846' => 'qlo', 'RcHm_v2.0_Chr1g0350621' => 'rch', 'RcHm_v2.0_Chr1g0350641' => 'rch', 'RcHm_v2.0_Chr2g0092891' => 'rch', 'RcHm_v2.0_Chr2g0100251' => 'rch', 'RcHm_v2.0_Chr2g0158661' => 'rch', 'RcHm_v2.0_Chr2g0172741' => 'rch', 'RcHm_v2.0_Chr4g0429571' => 'rch', 'RcHm_v2.0_Chr5g0042471' => 'rch', 'RcHm_v2.0_Chr7g0189451' => 'rch', 'Rhsim08G0052000' => 'rsi', 'Rhsim08G0174400' => 'rsi', 'Rhsim08G0193200' => 'rsi', 'Rhsim10G0214800' => 'rsi', 'Rhsim10G0214900' => 'rsi', 'Rhsim10G0215000' => 'rsi', 'Rhsim12G0022900' => 'rsi', 'Rhsim12G0177500' => 'rsi', 'Rhsim12G0177700' => 'rsi', 'Sabra03G0122600' => 'sbr', 'Sabra05G0097400' => 'sbr', 'Sabra12G0064100' => 'sbr', 'Sabra15G0121300' => 'sbr', 'SalBow2G0642' => 'sbo', 'SalBow5G2667' => 'sbo', 'SalBow5G4873' => 'sbo', 'SalBow8G2395' => 'sbo', 'Sc03g0003290' => 'sci', 'Sc10g0010130' => 'sci', 'Sc22g0003650' => 'sci', 'Sed0001603' => 'sed', 'Sed0004259' => 'sed', 'Sed0006789' => 'sed', 'Sed0011838' => 'sed', 'Sed0012964' => 'sed', 'Sed0016383' => 'sed', 'Sed0019010' => 'sed', 'Sed0020188' => 'sed', 'SEGI_04702' => 'sgi', 'SEGI_17231' => 'sgi', 'SEGI_18877' => 'sgi', 'SEGI_25196' => 'sgi', 'SEGI_25515' => 'sgi', 'SEGI_28445' => 'sgi', 'SEGI_37452' => 'sgi', 'SGA_v2.0_scaffold188G40336' => 'sas', 'SGA_v2.0_scaffold228G43247' => 'sas', 'SGA_v2.0_scaffold280G46853' => 'sas', 'SGA_v2.0_scaffold34G13808' => 'sas', 'SGA_v2.0_scaffold40G15576' => 'sas', 'SGA_v2.0_scaffold611G53188' => 'sas', 'SGA_v2.0_scaffold78G25461' => 'sas', 'SGA_v2.0_scaffold90G27888' => 'sas', 'SHI08601' => 'shi', 'SHI08606' => 'shi', 'SHI17117' => 'shi', 'SHI17119' => 'shi', 'SMO118G0201' => 'smo', 'SMO169G0247' => 'smo', 'SMO176G0006' => 'smo', 'SMO176G0015' => 'smo', 'SMO202G0006' => 'smo', 'SMO240G0050' => 'smo', 'SMO286G0009' => 'smo', 'SMO338G0033' => 'smo', 'SMO356G0533' => 'smo', 'SMO364G0382' => 'smo', 'SMO367G0166' => 'smo', 'SMO367G1098' => 'smo', 'Solyc01g009920.3' => 'sly', 'Solyc01g099300.3' => 'sly', 'Solyc02g084700.3' => 'sly', 'Solyc03g097520.3' => 'sly', 'Solyc06g071580.3' => 'sly', 'Solyc10g081760.3' => 'sly', 'Sopen01g005480' => 'spe', 'Sopen01g042850' => 'spe', 'Sopen02g029370' => 'spe', 'Sopen03g028280' => 'spe', 'Sopen06g027870' => 'spe', 'Sopen10g032270' => 'spe', 'Sp5g18180' => 'spa', 'Sp6g12880' => 'spa', 'Sp6g30850' => 'spa', 'Sp7g22960' => 'spa', 'Sp7g34010' => 'spa', 'SpUn1326_0010' => 'spa', 'TAR371G0242' => 'tar', 'TAR622G0638' => 'tar', 'TAR628G1548' => 'tar', 'TAR629G1079' => 'tar', 'TAR629G3413' => 'tar', 'THA.LOC104804249' => 'tha', 'THA.LOC104808315' => 'tha', 'THA.LOC104809238' => 'tha', 'THA.LOC104825484' => 'tha', 'Thecc.01G025500' => 'tca', 'Thecc.03G015800' => 'tca', 'Thecc.03G018000' => 'tca', 'Thecc.03G134800' => 'tca', 'Thecc.04G014700' => 'tca', 'Thhalv10006991m.g' => 'esa', 'Thhalv10012707m.g' => 'esa', 'Thhalv10015739m.g' => 'esa', 'Thhalv10024553m.g' => 'esa', 'Thhalv10024673m.g' => 'esa', 'Thhalv10029187m.g' => 'esa', 'TPR.G12971' => 'tpr', 'TPR.G29396' => 'tpr', 'TPR.G33376' => 'tpr', 'TPR.G35508' => 'tpr', 'TPR.G35516' => 'tpr', 'TPR.G37317' => 'tpr', 'TPR.G37389' => 'tpr', 'TPR.G37523' => 'tpr', 'TPR.G559' => 'tpr', 'TWI14G0070' => 'twi', 'TWI14G0729' => 'twi', 'TWI18G0596' => 'twi', 'TWI39G0780' => 'twi', 'TWI39G0850' => 'twi', 'TWI73G1052' => 'twi', 'unitig_52.g17485' => 'ugi', 'unitig_61.g26355' => 'ugi', 'vmacro01040' => 'vma', 'vmacro16731' => 'vma', 'vmacro18270' => 'vma', 'vmacro19142' => 'vma', 'vmacro19407' => 'vma', 'vmacro19408' => 'vma', 'vmacro21899' => 'vma', 'vmacro21900' => 'vma', 'vmacro21901' => 'vma', 'VMungo0251G0490' => 'vmu', 'VMungo0251G1748' => 'vmu', 'VMungo1309G0421' => 'vmu', 'Zm00001eb086500' => 'zma', 'Zm00001eb150680' => 'zma', 'Zm00001eb162330' => 'zma', 'Zm00001eb203130' => 'zma', 'Zm00001eb369480' => 'zma', 'Zm00001eb382340' => 'zma', 'Zm00001eb416360' => 'zma' ), 'gf_id' => 'HOM05D000902', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000902' ), 'data_identifier' => 'HOM05D000902', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000902', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '663', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02470' => 'bna', 'A01p16260' => 'bna', 'A02p01680' => 'bna', 'A03p16600' => 'bna', 'A03p55660' => 'bna', 'A03p64160' => 'bna', 'A03p64170' => 'bna', 'A08p31900' => 'bna', 'A09p59530' => 'bna', 'A10p08230' => 'bna', 'A10p25090' => 'bna', 'Aa31LG3G7100' => 'aar', 'Aa31LG3G7110' => 'aar', 'Aa31LG6G13160' => 'aar', 'Aa31LG7G10770' => 'aar', 'Aa31LG7G3830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2723' => 'aag', 'Actinidia08045' => 'ach', 'Actinidia08888' => 'ach', 'Actinidia18333' => 'ach', 'Actinidia19334' => 'ach', 'Actinidia25552' => 'ach', 'Actinidia26089' => 'ach', 'Actinidia30615' => 'ach', 'Actinidia30616' => 'ach', 'Actinidia33083' => 'ach', 'Actinidia35762' => 'ach', 'Ah.02g110620' => 'amhyb', 'Ah.11g046390' => 'amhyb', 'AL1G31670' => 'aly', 'AL6G23730' => 'aly', 'AL7G14740' => 'aly', 'AL7G14750' => 'aly', 'AL7G14760' => 'aly', 'AL7G28220' => 'aly', 'AL8G24940' => 'aly', 'Aqoxy3G01665' => 'aox', 'Aqoxy3G02853' => 'aox', 'Aqoxy5G01513' => 'aox', 'Aqoxy5G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8SKA4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ75LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKDA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0LJZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7REX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZP4YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWX7I5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2QKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS0L9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPCD8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q161UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC7XCF' => 'arhy', 'AT1G19100' => 'ath', 'AT4G24970' => 'ath', 'AT4G36270' => 'ath', 'AT4G36280' => 'ath', 'AT4G36290' => 'ath', 'AT5G13130' => 'ath', 'AT5G50780' => 'ath', 'ATR0582G266' => 'atr', 'ATR0661G195' => 'atr', 'ATR1152G031' => 'atr', 'Atru.chr11.2382' => 'acertr', 'Atru.chr12.2337' => 'acertr', 'Atru.chr3.744' => 'acertr', 'Atru.chr6.1870' => 'acertr', 'Atru.chr9.2515' => 'acertr', 'AUR62004120' => 'cqu', 'AUR62005667' => 'cqu', 'AUR62007634' => 'cqu', 'AUR62008186' => 'cqu', 'AUR62008187' => 'cqu', 'AUR62008188' => 'cqu', 'AUR62027954' => 'cqu', 'AUR62028766' => 'cqu', 'AUR62028767' => 'cqu', 'AUR62028768' => 'cqu', 'AUR62028886' => 'cqu', 'AUR62029563' => 'cqu', 'AUR62038832' => 'cqu', 'BcaB01g04149' => 'bca', 'BcaB03g12940' => 'bca', 'BcaB03g13090' => 'bca', 'BcaB03g14466' => 'bca', 'BcaB05g24035' => 'bca', 'BcaC01g06050' => 'bca', 'BcaC04g19148' => 'bca', 'BcaC04g20761' => 'bca', 'BcaC06g32845' => 'bca', 'BcaC07g41274' => 'bca', 'BcaC09g50827' => 'bca', 'BcaNung00741' => 'bca', 'BcaNung00742' => 'bca', 'BcaNung01859' => 'bca', 'BcaNung03985' => 'bca', 'BcaNung03989' => 'bca', 'BcaNung05661' => 'bca', 'BolC1t00257H' => 'bol', 'BolC1t01956H' => 'bol', 'BolC2t06534H' => 'bol', 'BolC3t14334H' => 'bol', 'BolC5t30451H' => 'bol', 'BolC7t45880H' => 'bol', 'BolC7t46586H' => 'bol', 'BolC8t49301H' => 'bol', 'BolC8t51837H' => 'bol', 'BolC9t56822H' => 'bol', 'BolC9t59235H' => 'bol', 'BraA01t00234Z' => 'bra', 'BraA01t01563Z' => 'bra', 'BraA02t05147Z' => 'bra', 'BraA03t10947Z' => 'bra', 'BraA03t14633Z' => 'bra', 'BraA08t35112Z' => 'bra', 'BraA09t41330Z' => 'bra', 'BraA10t44570Z' => 'bra', 'C01p02670' => 'bna', 'C01p20260' => 'bna', 'C02p05890' => 'bna', 'C03p19530' => 'bna', 'C05p17470' => 'bna', 'C07p53900' => 'bna', 'C07p61630' => 'bna', 'C08p16800' => 'bna', 'C08p42810' => 'bna', 'C09p39480' => 'bna', 'C09p63980' => 'bna', 'CAN.G1001.7' => 'can', 'CAN.G1034.55' => 'can', 'CAN.G143.7' => 'can', 'CAN.G3340.1' => 'can', 'CAN.G358.19' => 'can', 'CAN.G373.2' => 'can', 'CAN.G674.16' => 'can', 'CAN.G674.17' => 'can', 'CAN.G674.18' => 'can', 'CAN.G732.2' => 'can', 'CAN.G732.3' => 'can', 'CAN.G993.39' => 'can', 'CANSAT01G2052' => 'cansat', 'CANSAT80G0070' => 'cansat', 'CANSAT80G0483' => 'cansat', 'CANSAT80G0625' => 'cansat', 'CARHR019690' => 'chi', 'CARHR080280' => 'chi', 'CARHR152750' => 'chi', 'CARHR152760' => 'chi', 'CARHR152770' => 'chi', 'CARHR200340' => 'chi', 'CARHR232370' => 'chi', 'CARHR244670' => 'chi', 'CARHR244680' => 'chi', 'CARHR257520' => 'chi', 'Carub.0001s1872' => 'cru', 'Carub.0006s1130' => 'cru', 'Carub.0007s0396' => 'cru', 'Carub.0007s0397' => 'cru', 'Carub.0007s1608' => 'cru', 'Carub.0008s1068' => 'cru', 'Carub.0008s1077' => 'cru', 'Ca_16158_v3' => 'car', 'Ca_17571_v3' => 'car', 'Ca_21936_v3' => 'car', 'Ca_22350_v3' => 'car', 'CBR_g22445' => 'cbr', 'CBR_g26290' => 'cbr', 'Cc04_g09610' => 'ccan', 'Cc04_g12280' => 'ccan', 'Cc07_g10230' => 'ccan', 'CDE02G0093' => 'cde', 'CDE02G0701' => 'cde', 'CDE04G1050' => 'cde', 'CDE05G1833' => 'cde', 'CDE05G3058' => 'cde', 'CDE05G3380' => 'cde', 'CDE06G0536' => 'cde', 'Cfa006923' => 'cfa', 'Cfa009402' => 'cfa', 'Cfa018751' => 'cfa', 'Cfa019164' => 'cfa', 'Cfa022935' => 'cfa', 'Ciclev10019081m.g' => 'ccl', 'Ciclev10025076m.g' => 'ccl', 'Ciclev10030712m.g' => 'ccl', 'Ciclev10033760m.g' => 'ccl', 'CiPaw.05G105600' => 'cil', 'CiPaw.08G136700' => 'cil', 'CiPaw.11G003900' => 'cil', 'CiPaw.11G023700' => 'cil', 'CiPaw.12G003700' => 'cil', 'ClCG06G017100' => 'cla', 'ClCG06G018110' => 'cla', 'ClCG07G008800' => 'cla', 'ClCG07G015330' => 'cla', 'COL.COLO4_13698' => 'col', 'COL.COLO4_16659' => 'col', 'COL.COLO4_21986' => 'col', 'COL.COLO4_24049' => 'col', 'COL.COLO4_29061' => 'col', 'COL.COLO4_29075' => 'col', 'COL.COLO4_30094' => 'col', 'Cpa.g.c33689' => 'cpa', 'Cpa.g.sc108.39' => 'cpa', 'Cpa.g.sc108.41' => 'cpa', 'Cpa.g.sc1163.1' => 'cpa', 'Cpa.g.sc4.155' => 'cpa', 'Cpa.g.sc6.194' => 'cpa', 'CsaV3_1G000340' => 'csa', 'CsaV3_1G001400' => 'csa', 'CsaV3_4G002220' => 'csa', 'CsaV3_4G005370' => 'csa', 'CSS0007487' => 'camsi', 'CSS0008066' => 'camsi', 'CSS0009120' => 'camsi', 'CSS0015512' => 'camsi', 'CSS0022409' => 'camsi', 'CSS0025358' => 'camsi', 'CSS0044547' => 'camsi', 'DCAR_013057' => 'dca', 'DCAR_015058' => 'dca', 'DCAR_016027' => 'dca', 'DCAR_017327' => 'dca', 'DCAR_020743' => 'dca', 'DCAR_026157' => 'dca', 'DCAR_032339' => 'dca', 'DCAR_032340' => 'dca', 'Dinv11200' => 'din', 'Dinv11201' => 'din', 'Dinv20631' => 'din', 'Dinv23182' => 'din', 'Dinv33466' => 'din', 'Dinv33583' => 'din', 'Dinv38565' => 'din', 'Duzib068G0200' => 'dzi', 'Duzib147G0132' => 'dzi', 'Duzib147G0635' => 'dzi', 'Duzib205G1670' => 'dzi', 'Duzib251G0606' => 'dzi', 'ECA232G3336' => 'eca', 'ECA232G3763' => 'eca', 'ECA232G4845' => 'eca', 'ECA234G1607' => 'eca', 'ECA246G0932' => 'eca', 'ECA247G0781' => 'eca', 'ECA247G1932' => 'eca', 'ECA247G2079' => 'eca', 'ECA247G3338' => 'eca', 'ECA247G4115' => 'eca', 'EL10Ac3g06552' => 'bvu', 'EL10Ac5g10721' => 'bvu', 'EL10Ac5g10722' => 'bvu', 'EL10Ac5g10723' => 'bvu', 'EL10Ac5g11361' => 'bvu', 'EL10Ac6g13553' => 'bvu', 'EL10As8g23872' => 'bvu', 'Eucgr.B00250' => 'egr', 'Eucgr.B00251' => 'egr', 'Eucgr.B03533' => 'egr', 'Eucgr.I02381' => 'egr', 'Eucgr.K02700' => 'egr', 'FAN02G0174' => 'fan', 'FAN02G3146' => 'fan', 'FAN04G1672' => 'fan', 'FAN04G2273' => 'fan', 'FAN05G2791' => 'fan', 'FAN05G4035' => 'fan', 'FAN07G0834' => 'fan', 'FAN08G1198' => 'fan', 'FAN09G4182' => 'fan', 'FAN12G0496' => 'fan', 'FAN13G1027' => 'fan', 'FAN13G2951' => 'fan', 'FAN14G0705' => 'fan', 'FAN14G0720' => 'fan', 'FAN17G0201' => 'fan', 'FAN17G2665' => 'fan', 'FAN18G1456' => 'fan', 'FAN18G1525' => 'fan', 'FAN18G3500' => 'fan', 'FAN28G2670' => 'fan', 'FvH4_1g12391' => 'fve', 'FvH4_4g23220' => 'fve', 'FvH4_5g08810' => 'fve', 'FvH4_5g28960' => 'fve', 'FvH4_6g42820' => 'fve', 'FvH4_6g51110' => 'fve', 'Glyma.02G051802' => 'gma', 'Glyma.04G185300' => 'gma', 'Glyma.05G202900' => 'gma', 'Glyma.08G010300' => 'gma', 'Glyma.16G131900' => 'gma', 'Glyma.17G087900' => 'gma', 'Gohir.A07G048600' => 'ghi', 'Gohir.A11G179000' => 'ghi', 'Gohir.A12G140900' => 'ghi', 'Gohir.A12G140950' => 'ghi', 'Gohir.A12G191700' => 'ghi', 'Gohir.A13G086300' => 'ghi', 'Gohir.D07G052900' => 'ghi', 'Gohir.D11G186600' => 'ghi', 'Gohir.D12G145575' => 'ghi', 'Gohir.D12G145650' => 'ghi', 'Gohir.D12G145725' => 'ghi', 'Gohir.D12G194050' => 'ghi', 'Gohir.D13G091800' => 'ghi', 'Gorai.001G055900' => 'gra', 'Gorai.007G198400' => 'gra', 'Gorai.008G157000' => 'gra', 'Gorai.008G157100' => 'gra', 'Gorai.008G208700' => 'gra', 'Gorai.010G138700' => 'gra', 'GSVIVG01000977001' => 'vvi', 'GSVIVG01007708001' => 'vvi', 'GSVIVG01008587001' => 'vvi', 'GSVIVG01018849001' => 'vvi', 'GSVIVG01032432001' => 'vvi', 'HanXRQChr02g0034131' => 'han', 'HanXRQChr02g0035981' => 'han', 'HanXRQChr02g0035991' => 'han', 'HanXRQChr05g0155611' => 'han', 'HanXRQChr05g0155621' => 'han', 'HanXRQChr08g0236501' => 'han', 'HanXRQChr09g0261321' => 'han', 'HanXRQChr09g0272081' => 'han', 'HanXRQChr10g0310741' => 'han', 'HanXRQChr11g0325591' => 'han', 'HanXRQChr12g0385691' => 'han', 'HanXRQChr13g0387801' => 'han', 'HanXRQChr15g0463011' => 'han', 'Haze_03826' => 'cav', 'Haze_03827' => 'cav', 'Haze_07183' => 'cav', 'Haze_07537' => 'cav', 'Haze_07539' => 'cav', 'Haze_12461' => 'cav', 'Haze_16115' => 'cav', 'Haze_16808' => 'cav', 'Haze_18531' => 'cav', 'Hma1.2p1_0046F.1_g026700' => 'hma', 'Hma1.2p1_0046F.1_g026710' => 'hma', 'Hma1.2p1_0168F.1_g074340' => 'hma', 'Hma1.2p1_0266F.1_g107030' => 'hma', 'Hma1.2p1_0266F.1_g107060' => 'hma', 'Hma1.2p1_0275F.1_g110510' => 'hma', 'Hma1.2p1_0592F.1_g185490' => 'hma', 'Hma1.2p1_0592F.1_g185500' => 'hma', 'Hma1.2p1_0592F.1_g185510' => 'hma', 'Hma1.2p1_0592F.1_g185520' => 'hma', 'Hma1.2p1_0592F.1_g185530' => 'hma', 'Hma1.2p1_0818F.1_g223450' => 'hma', 'HPP92_009708' => 'vpl', 'HPP92_009793' => 'vpl', 'HPP92_009796' => 'vpl', 'HPP92_009797' => 'vpl', 'HPP92_014940' => 'vpl', 'HPP92_014988' => 'vpl', 'Hund02463' => 'sun', 'Hund02760' => 'sun', 'Hund05071' => 'sun', 'Hund10108' => 'sun', 'Hund11204' => 'sun', 'Hund14016' => 'sun', 'Hund16464' => 'sun', 'Lalb_Chr09g0333391' => 'lal', 'Lalb_Chr11g0070461' => 'lal', 'Lalb_Chr12g0201671' => 'lal', 'Lalb_Chr13g0297161' => 'lal', 'Lj1g0002823' => 'lja', 'Lj3C1074T6' => 'lonja', 'Lj4A212T28' => 'lonja', 'Lj4g0005516' => 'lja', 'Lj4g0013705' => 'lja', 'Lj4g0027865' => 'lja', 'Lj5C92G16' => 'lonja', 'Lj5C92T12' => 'lonja', 'Lj7C596T3' => 'lonja', 'Lj9A446G59' => 'lonja', 'Lj9A482G21' => 'lonja', 'Lsat_1_v5_gn_1_28261' => 'lsa', 'Lsat_1_v5_gn_1_28281' => 'lsa', 'Lsat_1_v5_gn_1_32721' => 'lsa', 'Lsat_1_v5_gn_4_151760' => 'lsa', 'Lsat_1_v5_gn_4_2120' => 'lsa', 'Lsat_1_v5_gn_4_75761' => 'lsa', 'Lsat_1_v5_gn_5_10920' => 'lsa', 'Manes.02G099900' => 'mes', 'Manes.11G096200' => 'mes', 'Manes.12G007200' => 'mes', 'Manes.14G048300' => 'mes', 'Manes.17G114700' => 'mes', 'Mapoly0002s0070' => 'mpo', 'Mapoly0029s0099' => 'mpo', 'MBI07_g24742_MAGBIO' => 'mbi', 'MBI10_g27988_MAGBIO' => 'mbi', 'MBI11_g13057_MAGBIO' => 'mbi', 'MD02G1137200' => 'mdo', 'MD06G1137200' => 'mdo', 'MD07G1122300' => 'mdo', 'MD09G1078200' => 'mdo', 'MD13G1123700' => 'mdo', 'MD14G1151900' => 'mdo', 'MD17G1030900' => 'mdo', 'MD17G1068200' => 'mdo', 'MD17G1068600' => 'mdo', 'Medtr3g077540' => 'mtr', 'Medtr4g105530' => 'mtr', 'Medtr8g076580' => 'mtr', 'Medtr8g076590' => 'mtr', 'Medtr8g096410' => 'mtr', 'MELO3C016411.2' => 'cme', 'MELO3C017780.2' => 'cme', 'MELO3C022560.2' => 'cme', 'MELO3C026187.2' => 'cme', 'MELO3C026286.2' => 'cme', 'MELO3C032854.2' => 'cme', 'Migut.H02495' => 'egut', 'Migut.I00561' => 'egut', 'Migut.K01015' => 'egut', 'Migut.K01016' => 'egut', 'Migut.L00743' => 'egut', 'Migut.L00744' => 'egut', 'Migut.L00746' => 'egut', 'Migut.L00798' => 'egut', 'Migut.L00799' => 'egut', 'Migut.N02096' => 'egut', 'MSTRG.11259' => 'ama', 'MSTRG.23142' => 'ama', 'MSTRG.2499' => 'ama', 'Nitab4.5_0000003g0730' => 'nta', 'Nitab4.5_0000137g0020' => 'nta', 'Nitab4.5_0000721g0210' => 'nta', 'Nitab4.5_0000723g0050' => 'nta', 'Nitab4.5_0000913g0070' => 'nta', 'Nitab4.5_0001332g0040' => 'nta', 'Nitab4.5_0001771g0050' => 'nta', 'Nitab4.5_0001918g0050' => 'nta', 'Nitab4.5_0002686g0030' => 'nta', 'Nitab4.5_0003156g0020' => 'nta', 'Nitab4.5_0003383g0040' => 'nta', 'Nitab4.5_0003918g0010' => 'nta', 'Nitab4.5_0006760g0010' => 'nta', 'Nn1g05981' => 'nnu', 'Nn1g06288' => 'nnu', 'Nn3g16371' => 'nnu', 'Nn3g16786' => 'nnu', 'Nn4g22232' => 'nnu', 'Oeu005144.1' => 'oeu', 'Oeu005145.1' => 'oeu', 'Oeu011348.1' => 'oeu', 'Oeu016415.1' => 'oeu', 'Oeu023501.1' => 'oeu', 'Oeu044473.1' => 'oeu', 'Oeu048892.2' => 'oeu', 'Os01g0549200' => 'osa', 'Os02g0469300' => 'osa', 'Os04g0311100' => 'osa', 'Os06g0474900' => 'osa', 'Os10g0181700' => 'osa', 'Os11g0454800' => 'osa', 'Peaxi162Scf00037g00714' => 'pax', 'Peaxi162Scf00084g01217' => 'pax', 'Peaxi162Scf00257g00217' => 'pax', 'Peaxi162Scf00516g00215' => 'pax', 'Peaxi162Scf00689g00123' => 'pax', 'PGR044G2719' => 'pgr', 'PGR083G1360' => 'pgr', 'PGR102G2849' => 'pgr', 'PGR119G2534' => 'pgr', 'PGSC0003DMG400003538' => 'stu', 'PGSC0003DMG400028138' => 'stu', 'PGSC0003DMG400031732' => 'stu', 'PGSC0003DMG400038165' => 'stu', 'Phvul.002G284600' => 'pvu', 'Phvul.003G258200' => 'pvu', 'Phvul.009G176500' => 'pvu', 'Potri.003G167201' => 'ptr', 'Potri.005G118400' => 'ptr', 'Potri.012G089000' => 'ptr', 'Potri.012G102800' => 'ptr', 'Potri.015G079400' => 'ptr', 'Potri.015G100900' => 'ptr', 'Pp3c14_9810' => 'ppa', 'Pp3c15_10450' => 'ppa', 'Pp3c20_19150' => 'ppa', 'Pp3c23_12740' => 'ppa', 'Pp3c23_6310' => 'ppa', 'Pp3c24_3720' => 'ppa', 'Pp3c27_2580' => 'ppa', 'Pp3c9_8990' => 'ppa', 'PRCOL_00002854' => 'pco', 'Prupe.1G221200' => 'ppe', 'Prupe.3G289000' => 'ppe', 'Prupe.5G147000' => 'ppe', 'Prupe.6G157300' => 'ppe', 'Prupe.7G163400' => 'ppe', 'Psat0s2177g0040' => 'psa', 'Psat3g174760' => 'psa', 'Psat3g192160' => 'psa', 'Psat4g058520' => 'psa', 'Psat4g096840' => 'psa', 'Psat7g037320' => 'psa', 'PSO017G1274' => 'pso', 'PSO017G5166' => 'pso', 'PSO063G4558' => 'pso', 'PSO170G4458' => 'pso', 'PSO170G5005' => 'pso', 'PSO210G6156' => 'pso', 'PSO210G6635' => 'pso', 'PSO210G7397' => 'pso', 'PSO210G7700' => 'pso', 'PSO455G0035' => 'pso', 'PSO455G0180' => 'pso', 'PSO478G4515' => 'pso', 'PSO832G1305' => 'pso', 'PSO832G3489' => 'pso', 'QL02p075247' => 'qlo', 'QL03p051148' => 'qlo', 'QL05p010313' => 'qlo', 'QL06p034627' => 'qlo', 'QL10p001889' => 'qlo', 'QL10p010846' => 'qlo', 'RcHm_v2.0_Chr1g0350621' => 'rch', 'RcHm_v2.0_Chr1g0350641' => 'rch', 'RcHm_v2.0_Chr2g0092891' => 'rch', 'RcHm_v2.0_Chr2g0100251' => 'rch', 'RcHm_v2.0_Chr2g0158661' => 'rch', 'RcHm_v2.0_Chr2g0172741' => 'rch', 'RcHm_v2.0_Chr4g0429571' => 'rch', 'RcHm_v2.0_Chr5g0042471' => 'rch', 'RcHm_v2.0_Chr7g0189451' => 'rch', 'Rhsim08G0052000' => 'rsi', 'Rhsim08G0174400' => 'rsi', 'Rhsim08G0193200' => 'rsi', 'Rhsim10G0214800' => 'rsi', 'Rhsim10G0214900' => 'rsi', 'Rhsim10G0215000' => 'rsi', 'Rhsim12G0022900' => 'rsi', 'Rhsim12G0177500' => 'rsi', 'Rhsim12G0177700' => 'rsi', 'Sabra03G0122600' => 'sbr', 'Sabra05G0097400' => 'sbr', 'Sabra12G0064100' => 'sbr', 'Sabra15G0121300' => 'sbr', 'SalBow2G0642' => 'sbo', 'SalBow5G2667' => 'sbo', 'SalBow5G4873' => 'sbo', 'SalBow8G2395' => 'sbo', 'Sc03g0003290' => 'sci', 'Sc10g0010130' => 'sci', 'Sc22g0003650' => 'sci', 'Sed0001603' => 'sed', 'Sed0004259' => 'sed', 'Sed0006789' => 'sed', 'Sed0011838' => 'sed', 'Sed0012964' => 'sed', 'Sed0016383' => 'sed', 'Sed0019010' => 'sed', 'Sed0020188' => 'sed', 'SEGI_04702' => 'sgi', 'SEGI_17231' => 'sgi', 'SEGI_18877' => 'sgi', 'SEGI_25196' => 'sgi', 'SEGI_25515' => 'sgi', 'SEGI_28445' => 'sgi', 'SEGI_37452' => 'sgi', 'SGA_v2.0_scaffold188G40336' => 'sas', 'SGA_v2.0_scaffold228G43247' => 'sas', 'SGA_v2.0_scaffold280G46853' => 'sas', 'SGA_v2.0_scaffold34G13808' => 'sas', 'SGA_v2.0_scaffold40G15576' => 'sas', 'SGA_v2.0_scaffold611G53188' => 'sas', 'SGA_v2.0_scaffold78G25461' => 'sas', 'SGA_v2.0_scaffold90G27888' => 'sas', 'SHI08601' => 'shi', 'SHI08606' => 'shi', 'SHI17117' => 'shi', 'SHI17119' => 'shi', 'SMO118G0201' => 'smo', 'SMO169G0247' => 'smo', 'SMO176G0006' => 'smo', 'SMO176G0015' => 'smo', 'SMO202G0006' => 'smo', 'SMO240G0050' => 'smo', 'SMO286G0009' => 'smo', 'SMO338G0033' => 'smo', 'SMO356G0533' => 'smo', 'SMO364G0382' => 'smo', 'SMO367G0166' => 'smo', 'SMO367G1098' => 'smo', 'Solyc01g009920.3' => 'sly', 'Solyc01g099300.3' => 'sly', 'Solyc02g084700.3' => 'sly', 'Solyc03g097520.3' => 'sly', 'Solyc06g071580.3' => 'sly', 'Solyc10g081760.3' => 'sly', 'Sopen01g005480' => 'spe', 'Sopen01g042850' => 'spe', 'Sopen02g029370' => 'spe', 'Sopen03g028280' => 'spe', 'Sopen06g027870' => 'spe', 'Sopen10g032270' => 'spe', 'Sp5g18180' => 'spa', 'Sp6g12880' => 'spa', 'Sp6g30850' => 'spa', 'Sp7g22960' => 'spa', 'Sp7g34010' => 'spa', 'SpUn1326_0010' => 'spa', 'TAR371G0242' => 'tar', 'TAR622G0638' => 'tar', 'TAR628G1548' => 'tar', 'TAR629G1079' => 'tar', 'TAR629G3413' => 'tar', 'THA.LOC104804249' => 'tha', 'THA.LOC104808315' => 'tha', 'THA.LOC104809238' => 'tha', 'THA.LOC104825484' => 'tha', 'Thecc.01G025500' => 'tca', 'Thecc.03G015800' => 'tca', 'Thecc.03G018000' => 'tca', 'Thecc.03G134800' => 'tca', 'Thecc.04G014700' => 'tca', 'Thhalv10006991m.g' => 'esa', 'Thhalv10012707m.g' => 'esa', 'Thhalv10015739m.g' => 'esa', 'Thhalv10024553m.g' => 'esa', 'Thhalv10024673m.g' => 'esa', 'Thhalv10029187m.g' => 'esa', 'TPR.G12971' => 'tpr', 'TPR.G29396' => 'tpr', 'TPR.G33376' => 'tpr', 'TPR.G35508' => 'tpr', 'TPR.G35516' => 'tpr', 'TPR.G37317' => 'tpr', 'TPR.G37389' => 'tpr', 'TPR.G37523' => 'tpr', 'TPR.G559' => 'tpr', 'TWI14G0070' => 'twi', 'TWI14G0729' => 'twi', 'TWI18G0596' => 'twi', 'TWI39G0780' => 'twi', 'TWI39G0850' => 'twi', 'TWI73G1052' => 'twi', 'unitig_52.g17485' => 'ugi', 'unitig_61.g26355' => 'ugi', 'vmacro01040' => 'vma', 'vmacro16731' => 'vma', 'vmacro18270' => 'vma', 'vmacro19142' => 'vma', 'vmacro19407' => 'vma', 'vmacro19408' => 'vma', 'vmacro21899' => 'vma', 'vmacro21900' => 'vma', 'vmacro21901' => 'vma', 'VMungo0251G0490' => 'vmu', 'VMungo0251G1748' => 'vmu', 'VMungo1309G0421' => 'vmu', 'Zm00001eb086500' => 'zma', 'Zm00001eb150680' => 'zma', 'Zm00001eb162330' => 'zma', 'Zm00001eb203130' => 'zma', 'Zm00001eb369480' => 'zma', 'Zm00001eb382340' => 'zma', 'Zm00001eb416360' => 'zma' ) $gf_id = 'HOM05D000902' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000902' ) $data_identifier = 'HOM05D000902' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 13, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 10, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 6, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 9, 'hma' => (int) 12, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 4, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 6, 'ppa' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 6, 'rch' => (int) 9, 'rsi' => (int) 9, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 12, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 3, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416360' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000902', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '663', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02470' => 'bna', 'A01p16260' => 'bna', 'A02p01680' => 'bna', 'A03p16600' => 'bna', 'A03p55660' => 'bna', 'A03p64160' => 'bna', 'A03p64170' => 'bna', 'A08p31900' => 'bna', 'A09p59530' => 'bna', 'A10p08230' => 'bna', 'A10p25090' => 'bna', 'Aa31LG3G7100' => 'aar', 'Aa31LG3G7110' => 'aar', 'Aa31LG6G13160' => 'aar', 'Aa31LG7G10770' => 'aar', 'Aa31LG7G3830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2723' => 'aag', 'Actinidia08045' => 'ach', 'Actinidia08888' => 'ach', 'Actinidia18333' => 'ach', 'Actinidia19334' => 'ach', 'Actinidia25552' => 'ach', 'Actinidia26089' => 'ach', 'Actinidia30615' => 'ach', 'Actinidia30616' => 'ach', 'Actinidia33083' => 'ach', 'Actinidia35762' => 'ach', 'Ah.02g110620' => 'amhyb', 'Ah.11g046390' => 'amhyb', 'AL1G31670' => 'aly', 'AL6G23730' => 'aly', 'AL7G14740' => 'aly', 'AL7G14750' => 'aly', 'AL7G14760' => 'aly', 'AL7G28220' => 'aly', 'AL8G24940' => 'aly', 'Aqoxy3G01665' => 'aox', 'Aqoxy3G02853' => 'aox', 'Aqoxy5G01513' => 'aox', 'Aqoxy5G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8SKA4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ75LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKDA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0LJZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7REX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZP4YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWX7I5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2QKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS0L9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPCD8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q161UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC7XCF' => 'arhy', 'AT1G19100' => 'ath', 'AT4G24970' => 'ath', 'AT4G36270' => 'ath', 'AT4G36280' => 'ath', 'AT4G36290' => 'ath', 'AT5G13130' => 'ath', 'AT5G50780' => 'ath', 'ATR0582G266' => 'atr', 'ATR0661G195' => 'atr', 'ATR1152G031' => 'atr', 'Atru.chr11.2382' => 'acertr', 'Atru.chr12.2337' => 'acertr', 'Atru.chr3.744' => 'acertr', 'Atru.chr6.1870' => 'acertr', 'Atru.chr9.2515' => 'acertr', 'AUR62004120' => 'cqu', 'AUR62005667' => 'cqu', 'AUR62007634' => 'cqu', 'AUR62008186' => 'cqu', 'AUR62008187' => 'cqu', 'AUR62008188' => 'cqu', 'AUR62027954' => 'cqu', 'AUR62028766' => 'cqu', 'AUR62028767' => 'cqu', 'AUR62028768' => 'cqu', 'AUR62028886' => 'cqu', 'AUR62029563' => 'cqu', 'AUR62038832' => 'cqu', 'BcaB01g04149' => 'bca', 'BcaB03g12940' => 'bca', 'BcaB03g13090' => 'bca', 'BcaB03g14466' => 'bca', 'BcaB05g24035' => 'bca', 'BcaC01g06050' => 'bca', 'BcaC04g19148' => 'bca', 'BcaC04g20761' => 'bca', 'BcaC06g32845' => 'bca', 'BcaC07g41274' => 'bca', 'BcaC09g50827' => 'bca', 'BcaNung00741' => 'bca', 'BcaNung00742' => 'bca', 'BcaNung01859' => 'bca', 'BcaNung03985' => 'bca', 'BcaNung03989' => 'bca', 'BcaNung05661' => 'bca', 'BolC1t00257H' => 'bol', 'BolC1t01956H' => 'bol', 'BolC2t06534H' => 'bol', 'BolC3t14334H' => 'bol', 'BolC5t30451H' => 'bol', 'BolC7t45880H' => 'bol', 'BolC7t46586H' => 'bol', 'BolC8t49301H' => 'bol', 'BolC8t51837H' => 'bol', 'BolC9t56822H' => 'bol', 'BolC9t59235H' => 'bol', 'BraA01t00234Z' => 'bra', 'BraA01t01563Z' => 'bra', 'BraA02t05147Z' => 'bra', 'BraA03t10947Z' => 'bra', 'BraA03t14633Z' => 'bra', 'BraA08t35112Z' => 'bra', 'BraA09t41330Z' => 'bra', 'BraA10t44570Z' => 'bra', 'C01p02670' => 'bna', 'C01p20260' => 'bna', 'C02p05890' => 'bna', 'C03p19530' => 'bna', 'C05p17470' => 'bna', 'C07p53900' => 'bna', 'C07p61630' => 'bna', 'C08p16800' => 'bna', 'C08p42810' => 'bna', 'C09p39480' => 'bna', 'C09p63980' => 'bna', 'CAN.G1001.7' => 'can', 'CAN.G1034.55' => 'can', 'CAN.G143.7' => 'can', 'CAN.G3340.1' => 'can', 'CAN.G358.19' => 'can', 'CAN.G373.2' => 'can', 'CAN.G674.16' => 'can', 'CAN.G674.17' => 'can', 'CAN.G674.18' => 'can', 'CAN.G732.2' => 'can', 'CAN.G732.3' => 'can', 'CAN.G993.39' => 'can', 'CANSAT01G2052' => 'cansat', 'CANSAT80G0070' => 'cansat', 'CANSAT80G0483' => 'cansat', 'CANSAT80G0625' => 'cansat', 'CARHR019690' => 'chi', 'CARHR080280' => 'chi', 'CARHR152750' => 'chi', 'CARHR152760' => 'chi', 'CARHR152770' => 'chi', 'CARHR200340' => 'chi', 'CARHR232370' => 'chi', 'CARHR244670' => 'chi', 'CARHR244680' => 'chi', 'CARHR257520' => 'chi', 'Carub.0001s1872' => 'cru', 'Carub.0006s1130' => 'cru', 'Carub.0007s0396' => 'cru', 'Carub.0007s0397' => 'cru', 'Carub.0007s1608' => 'cru', 'Carub.0008s1068' => 'cru', 'Carub.0008s1077' => 'cru', 'Ca_16158_v3' => 'car', 'Ca_17571_v3' => 'car', 'Ca_21936_v3' => 'car', 'Ca_22350_v3' => 'car', 'CBR_g22445' => 'cbr', 'CBR_g26290' => 'cbr', 'Cc04_g09610' => 'ccan', 'Cc04_g12280' => 'ccan', 'Cc07_g10230' => 'ccan', 'CDE02G0093' => 'cde', 'CDE02G0701' => 'cde', 'CDE04G1050' => 'cde', 'CDE05G1833' => 'cde', 'CDE05G3058' => 'cde', 'CDE05G3380' => 'cde', 'CDE06G0536' => 'cde', 'Cfa006923' => 'cfa', 'Cfa009402' => 'cfa', 'Cfa018751' => 'cfa', 'Cfa019164' => 'cfa', 'Cfa022935' => 'cfa', 'Ciclev10019081m.g' => 'ccl', 'Ciclev10025076m.g' => 'ccl', 'Ciclev10030712m.g' => 'ccl', 'Ciclev10033760m.g' => 'ccl', 'CiPaw.05G105600' => 'cil', 'CiPaw.08G136700' => 'cil', 'CiPaw.11G003900' => 'cil', 'CiPaw.11G023700' => 'cil', 'CiPaw.12G003700' => 'cil', 'ClCG06G017100' => 'cla', 'ClCG06G018110' => 'cla', 'ClCG07G008800' => 'cla', 'ClCG07G015330' => 'cla', 'COL.COLO4_13698' => 'col', 'COL.COLO4_16659' => 'col', 'COL.COLO4_21986' => 'col', 'COL.COLO4_24049' => 'col', 'COL.COLO4_29061' => 'col', 'COL.COLO4_29075' => 'col', 'COL.COLO4_30094' => 'col', 'Cpa.g.c33689' => 'cpa', 'Cpa.g.sc108.39' => 'cpa', 'Cpa.g.sc108.41' => 'cpa', 'Cpa.g.sc1163.1' => 'cpa', 'Cpa.g.sc4.155' => 'cpa', 'Cpa.g.sc6.194' => 'cpa', 'CsaV3_1G000340' => 'csa', 'CsaV3_1G001400' => 'csa', 'CsaV3_4G002220' => 'csa', 'CsaV3_4G005370' => 'csa', 'CSS0007487' => 'camsi', 'CSS0008066' => 'camsi', 'CSS0009120' => 'camsi', 'CSS0015512' => 'camsi', 'CSS0022409' => 'camsi', 'CSS0025358' => 'camsi', 'CSS0044547' => 'camsi', 'DCAR_013057' => 'dca', 'DCAR_015058' => 'dca', 'DCAR_016027' => 'dca', 'DCAR_017327' => 'dca', 'DCAR_020743' => 'dca', 'DCAR_026157' => 'dca', 'DCAR_032339' => 'dca', 'DCAR_032340' => 'dca', 'Dinv11200' => 'din', 'Dinv11201' => 'din', 'Dinv20631' => 'din', 'Dinv23182' => 'din', 'Dinv33466' => 'din', 'Dinv33583' => 'din', 'Dinv38565' => 'din', 'Duzib068G0200' => 'dzi', 'Duzib147G0132' => 'dzi', 'Duzib147G0635' => 'dzi', 'Duzib205G1670' => 'dzi', 'Duzib251G0606' => 'dzi', 'ECA232G3336' => 'eca', 'ECA232G3763' => 'eca', 'ECA232G4845' => 'eca', 'ECA234G1607' => 'eca', 'ECA246G0932' => 'eca', 'ECA247G0781' => 'eca', 'ECA247G1932' => 'eca', 'ECA247G2079' => 'eca', 'ECA247G3338' => 'eca', 'ECA247G4115' => 'eca', 'EL10Ac3g06552' => 'bvu', 'EL10Ac5g10721' => 'bvu', 'EL10Ac5g10722' => 'bvu', 'EL10Ac5g10723' => 'bvu', 'EL10Ac5g11361' => 'bvu', 'EL10Ac6g13553' => 'bvu', 'EL10As8g23872' => 'bvu', 'Eucgr.B00250' => 'egr', 'Eucgr.B00251' => 'egr', 'Eucgr.B03533' => 'egr', 'Eucgr.I02381' => 'egr', 'Eucgr.K02700' => 'egr', 'FAN02G0174' => 'fan', 'FAN02G3146' => 'fan', 'FAN04G1672' => 'fan', 'FAN04G2273' => 'fan', 'FAN05G2791' => 'fan', 'FAN05G4035' => 'fan', 'FAN07G0834' => 'fan', 'FAN08G1198' => 'fan', 'FAN09G4182' => 'fan', 'FAN12G0496' => 'fan', 'FAN13G1027' => 'fan', 'FAN13G2951' => 'fan', 'FAN14G0705' => 'fan', 'FAN14G0720' => 'fan', 'FAN17G0201' => 'fan', 'FAN17G2665' => 'fan', 'FAN18G1456' => 'fan', 'FAN18G1525' => 'fan', 'FAN18G3500' => 'fan', 'FAN28G2670' => 'fan', 'FvH4_1g12391' => 'fve', 'FvH4_4g23220' => 'fve', 'FvH4_5g08810' => 'fve', 'FvH4_5g28960' => 'fve', 'FvH4_6g42820' => 'fve', 'FvH4_6g51110' => 'fve', 'Glyma.02G051802' => 'gma', 'Glyma.04G185300' => 'gma', 'Glyma.05G202900' => 'gma', 'Glyma.08G010300' => 'gma', 'Glyma.16G131900' => 'gma', 'Glyma.17G087900' => 'gma', 'Gohir.A07G048600' => 'ghi', 'Gohir.A11G179000' => 'ghi', 'Gohir.A12G140900' => 'ghi', 'Gohir.A12G140950' => 'ghi', 'Gohir.A12G191700' => 'ghi', 'Gohir.A13G086300' => 'ghi', 'Gohir.D07G052900' => 'ghi', 'Gohir.D11G186600' => 'ghi', 'Gohir.D12G145575' => 'ghi', 'Gohir.D12G145650' => 'ghi', 'Gohir.D12G145725' => 'ghi', 'Gohir.D12G194050' => 'ghi', 'Gohir.D13G091800' => 'ghi', 'Gorai.001G055900' => 'gra', 'Gorai.007G198400' => 'gra', 'Gorai.008G157000' => 'gra', 'Gorai.008G157100' => 'gra', 'Gorai.008G208700' => 'gra', 'Gorai.010G138700' => 'gra', 'GSVIVG01000977001' => 'vvi', 'GSVIVG01007708001' => 'vvi', 'GSVIVG01008587001' => 'vvi', 'GSVIVG01018849001' => 'vvi', 'GSVIVG01032432001' => 'vvi', 'HanXRQChr02g0034131' => 'han', 'HanXRQChr02g0035981' => 'han', 'HanXRQChr02g0035991' => 'han', 'HanXRQChr05g0155611' => 'han', 'HanXRQChr05g0155621' => 'han', 'HanXRQChr08g0236501' => 'han', 'HanXRQChr09g0261321' => 'han', 'HanXRQChr09g0272081' => 'han', 'HanXRQChr10g0310741' => 'han', 'HanXRQChr11g0325591' => 'han', 'HanXRQChr12g0385691' => 'han', 'HanXRQChr13g0387801' => 'han', 'HanXRQChr15g0463011' => 'han', 'Haze_03826' => 'cav', 'Haze_03827' => 'cav', 'Haze_07183' => 'cav', 'Haze_07537' => 'cav', 'Haze_07539' => 'cav', 'Haze_12461' => 'cav', 'Haze_16115' => 'cav', 'Haze_16808' => 'cav', 'Haze_18531' => 'cav', 'Hma1.2p1_0046F.1_g026700' => 'hma', 'Hma1.2p1_0046F.1_g026710' => 'hma', 'Hma1.2p1_0168F.1_g074340' => 'hma', 'Hma1.2p1_0266F.1_g107030' => 'hma', 'Hma1.2p1_0266F.1_g107060' => 'hma', 'Hma1.2p1_0275F.1_g110510' => 'hma', 'Hma1.2p1_0592F.1_g185490' => 'hma', 'Hma1.2p1_0592F.1_g185500' => 'hma', 'Hma1.2p1_0592F.1_g185510' => 'hma', 'Hma1.2p1_0592F.1_g185520' => 'hma', 'Hma1.2p1_0592F.1_g185530' => 'hma', 'Hma1.2p1_0818F.1_g223450' => 'hma', 'HPP92_009708' => 'vpl', 'HPP92_009793' => 'vpl', 'HPP92_009796' => 'vpl', 'HPP92_009797' => 'vpl', 'HPP92_014940' => 'vpl', 'HPP92_014988' => 'vpl', 'Hund02463' => 'sun', 'Hund02760' => 'sun', 'Hund05071' => 'sun', 'Hund10108' => 'sun', 'Hund11204' => 'sun', 'Hund14016' => 'sun', 'Hund16464' => 'sun', 'Lalb_Chr09g0333391' => 'lal', 'Lalb_Chr11g0070461' => 'lal', 'Lalb_Chr12g0201671' => 'lal', 'Lalb_Chr13g0297161' => 'lal', 'Lj1g0002823' => 'lja', 'Lj3C1074T6' => 'lonja', 'Lj4A212T28' => 'lonja', 'Lj4g0005516' => 'lja', 'Lj4g0013705' => 'lja', 'Lj4g0027865' => 'lja', 'Lj5C92G16' => 'lonja', 'Lj5C92T12' => 'lonja', 'Lj7C596T3' => 'lonja', 'Lj9A446G59' => 'lonja', 'Lj9A482G21' => 'lonja', 'Lsat_1_v5_gn_1_28261' => 'lsa', 'Lsat_1_v5_gn_1_28281' => 'lsa', 'Lsat_1_v5_gn_1_32721' => 'lsa', 'Lsat_1_v5_gn_4_151760' => 'lsa', 'Lsat_1_v5_gn_4_2120' => 'lsa', 'Lsat_1_v5_gn_4_75761' => 'lsa', 'Lsat_1_v5_gn_5_10920' => 'lsa', 'Manes.02G099900' => 'mes', 'Manes.11G096200' => 'mes', 'Manes.12G007200' => 'mes', 'Manes.14G048300' => 'mes', 'Manes.17G114700' => 'mes', 'Mapoly0002s0070' => 'mpo', 'Mapoly0029s0099' => 'mpo', 'MBI07_g24742_MAGBIO' => 'mbi', 'MBI10_g27988_MAGBIO' => 'mbi', 'MBI11_g13057_MAGBIO' => 'mbi', 'MD02G1137200' => 'mdo', 'MD06G1137200' => 'mdo', 'MD07G1122300' => 'mdo', 'MD09G1078200' => 'mdo', 'MD13G1123700' => 'mdo', 'MD14G1151900' => 'mdo', 'MD17G1030900' => 'mdo', 'MD17G1068200' => 'mdo', 'MD17G1068600' => 'mdo', 'Medtr3g077540' => 'mtr', 'Medtr4g105530' => 'mtr', 'Medtr8g076580' => 'mtr', 'Medtr8g076590' => 'mtr', 'Medtr8g096410' => 'mtr', 'MELO3C016411.2' => 'cme', 'MELO3C017780.2' => 'cme', 'MELO3C022560.2' => 'cme', 'MELO3C026187.2' => 'cme', 'MELO3C026286.2' => 'cme', 'MELO3C032854.2' => 'cme', 'Migut.H02495' => 'egut', 'Migut.I00561' => 'egut', 'Migut.K01015' => 'egut', 'Migut.K01016' => 'egut', 'Migut.L00743' => 'egut', 'Migut.L00744' => 'egut', 'Migut.L00746' => 'egut', 'Migut.L00798' => 'egut', 'Migut.L00799' => 'egut', 'Migut.N02096' => 'egut', 'MSTRG.11259' => 'ama', 'MSTRG.23142' => 'ama', 'MSTRG.2499' => 'ama', 'Nitab4.5_0000003g0730' => 'nta', 'Nitab4.5_0000137g0020' => 'nta', 'Nitab4.5_0000721g0210' => 'nta', 'Nitab4.5_0000723g0050' => 'nta', 'Nitab4.5_0000913g0070' => 'nta', 'Nitab4.5_0001332g0040' => 'nta', 'Nitab4.5_0001771g0050' => 'nta', 'Nitab4.5_0001918g0050' => 'nta', 'Nitab4.5_0002686g0030' => 'nta', 'Nitab4.5_0003156g0020' => 'nta', 'Nitab4.5_0003383g0040' => 'nta', 'Nitab4.5_0003918g0010' => 'nta', 'Nitab4.5_0006760g0010' => 'nta', 'Nn1g05981' => 'nnu', 'Nn1g06288' => 'nnu', 'Nn3g16371' => 'nnu', 'Nn3g16786' => 'nnu', 'Nn4g22232' => 'nnu', 'Oeu005144.1' => 'oeu', 'Oeu005145.1' => 'oeu', 'Oeu011348.1' => 'oeu', 'Oeu016415.1' => 'oeu', 'Oeu023501.1' => 'oeu', 'Oeu044473.1' => 'oeu', 'Oeu048892.2' => 'oeu', 'Os01g0549200' => 'osa', 'Os02g0469300' => 'osa', 'Os04g0311100' => 'osa', 'Os06g0474900' => 'osa', 'Os10g0181700' => 'osa', 'Os11g0454800' => 'osa', 'Peaxi162Scf00037g00714' => 'pax', 'Peaxi162Scf00084g01217' => 'pax', 'Peaxi162Scf00257g00217' => 'pax', 'Peaxi162Scf00516g00215' => 'pax', 'Peaxi162Scf00689g00123' => 'pax', 'PGR044G2719' => 'pgr', 'PGR083G1360' => 'pgr', 'PGR102G2849' => 'pgr', 'PGR119G2534' => 'pgr', 'PGSC0003DMG400003538' => 'stu', 'PGSC0003DMG400028138' => 'stu', 'PGSC0003DMG400031732' => 'stu', 'PGSC0003DMG400038165' => 'stu', 'Phvul.002G284600' => 'pvu', 'Phvul.003G258200' => 'pvu', 'Phvul.009G176500' => 'pvu', 'Potri.003G167201' => 'ptr', 'Potri.005G118400' => 'ptr', 'Potri.012G089000' => 'ptr', 'Potri.012G102800' => 'ptr', 'Potri.015G079400' => 'ptr', 'Potri.015G100900' => 'ptr', 'Pp3c14_9810' => 'ppa', 'Pp3c15_10450' => 'ppa', 'Pp3c20_19150' => 'ppa', 'Pp3c23_12740' => 'ppa', 'Pp3c23_6310' => 'ppa', 'Pp3c24_3720' => 'ppa', 'Pp3c27_2580' => 'ppa', 'Pp3c9_8990' => 'ppa', 'PRCOL_00002854' => 'pco', 'Prupe.1G221200' => 'ppe', 'Prupe.3G289000' => 'ppe', 'Prupe.5G147000' => 'ppe', 'Prupe.6G157300' => 'ppe', 'Prupe.7G163400' => 'ppe', 'Psat0s2177g0040' => 'psa', 'Psat3g174760' => 'psa', 'Psat3g192160' => 'psa', 'Psat4g058520' => 'psa', 'Psat4g096840' => 'psa', 'Psat7g037320' => 'psa', 'PSO017G1274' => 'pso', 'PSO017G5166' => 'pso', 'PSO063G4558' => 'pso', 'PSO170G4458' => 'pso', 'PSO170G5005' => 'pso', 'PSO210G6156' => 'pso', 'PSO210G6635' => 'pso', 'PSO210G7397' => 'pso', 'PSO210G7700' => 'pso', 'PSO455G0035' => 'pso', 'PSO455G0180' => 'pso', 'PSO478G4515' => 'pso', 'PSO832G1305' => 'pso', 'PSO832G3489' => 'pso', 'QL02p075247' => 'qlo', 'QL03p051148' => 'qlo', 'QL05p010313' => 'qlo', 'QL06p034627' => 'qlo', 'QL10p001889' => 'qlo', 'QL10p010846' => 'qlo', 'RcHm_v2.0_Chr1g0350621' => 'rch', 'RcHm_v2.0_Chr1g0350641' => 'rch', 'RcHm_v2.0_Chr2g0092891' => 'rch', 'RcHm_v2.0_Chr2g0100251' => 'rch', 'RcHm_v2.0_Chr2g0158661' => 'rch', 'RcHm_v2.0_Chr2g0172741' => 'rch', 'RcHm_v2.0_Chr4g0429571' => 'rch', 'RcHm_v2.0_Chr5g0042471' => 'rch', 'RcHm_v2.0_Chr7g0189451' => 'rch', 'Rhsim08G0052000' => 'rsi', 'Rhsim08G0174400' => 'rsi', 'Rhsim08G0193200' => 'rsi', 'Rhsim10G0214800' => 'rsi', 'Rhsim10G0214900' => 'rsi', 'Rhsim10G0215000' => 'rsi', 'Rhsim12G0022900' => 'rsi', 'Rhsim12G0177500' => 'rsi', 'Rhsim12G0177700' => 'rsi', 'Sabra03G0122600' => 'sbr', 'Sabra05G0097400' => 'sbr', 'Sabra12G0064100' => 'sbr', 'Sabra15G0121300' => 'sbr', 'SalBow2G0642' => 'sbo', 'SalBow5G2667' => 'sbo', 'SalBow5G4873' => 'sbo', 'SalBow8G2395' => 'sbo', 'Sc03g0003290' => 'sci', 'Sc10g0010130' => 'sci', 'Sc22g0003650' => 'sci', 'Sed0001603' => 'sed', 'Sed0004259' => 'sed', 'Sed0006789' => 'sed', 'Sed0011838' => 'sed', 'Sed0012964' => 'sed', 'Sed0016383' => 'sed', 'Sed0019010' => 'sed', 'Sed0020188' => 'sed', 'SEGI_04702' => 'sgi', 'SEGI_17231' => 'sgi', 'SEGI_18877' => 'sgi', 'SEGI_25196' => 'sgi', 'SEGI_25515' => 'sgi', 'SEGI_28445' => 'sgi', 'SEGI_37452' => 'sgi', 'SGA_v2.0_scaffold188G40336' => 'sas', 'SGA_v2.0_scaffold228G43247' => 'sas', 'SGA_v2.0_scaffold280G46853' => 'sas', 'SGA_v2.0_scaffold34G13808' => 'sas', 'SGA_v2.0_scaffold40G15576' => 'sas', 'SGA_v2.0_scaffold611G53188' => 'sas', 'SGA_v2.0_scaffold78G25461' => 'sas', 'SGA_v2.0_scaffold90G27888' => 'sas', 'SHI08601' => 'shi', 'SHI08606' => 'shi', 'SHI17117' => 'shi', 'SHI17119' => 'shi', 'SMO118G0201' => 'smo', 'SMO169G0247' => 'smo', 'SMO176G0006' => 'smo', 'SMO176G0015' => 'smo', 'SMO202G0006' => 'smo', 'SMO240G0050' => 'smo', 'SMO286G0009' => 'smo', 'SMO338G0033' => 'smo', 'SMO356G0533' => 'smo', 'SMO364G0382' => 'smo', 'SMO367G0166' => 'smo', 'SMO367G1098' => 'smo', 'Solyc01g009920.3' => 'sly', 'Solyc01g099300.3' => 'sly', 'Solyc02g084700.3' => 'sly', 'Solyc03g097520.3' => 'sly', 'Solyc06g071580.3' => 'sly', 'Solyc10g081760.3' => 'sly', 'Sopen01g005480' => 'spe', 'Sopen01g042850' => 'spe', 'Sopen02g029370' => 'spe', 'Sopen03g028280' => 'spe', 'Sopen06g027870' => 'spe', 'Sopen10g032270' => 'spe', 'Sp5g18180' => 'spa', 'Sp6g12880' => 'spa', 'Sp6g30850' => 'spa', 'Sp7g22960' => 'spa', 'Sp7g34010' => 'spa', 'SpUn1326_0010' => 'spa', 'TAR371G0242' => 'tar', 'TAR622G0638' => 'tar', 'TAR628G1548' => 'tar', 'TAR629G1079' => 'tar', 'TAR629G3413' => 'tar', 'THA.LOC104804249' => 'tha', 'THA.LOC104808315' => 'tha', 'THA.LOC104809238' => 'tha', 'THA.LOC104825484' => 'tha', 'Thecc.01G025500' => 'tca', 'Thecc.03G015800' => 'tca', 'Thecc.03G018000' => 'tca', 'Thecc.03G134800' => 'tca', 'Thecc.04G014700' => 'tca', 'Thhalv10006991m.g' => 'esa', 'Thhalv10012707m.g' => 'esa', 'Thhalv10015739m.g' => 'esa', 'Thhalv10024553m.g' => 'esa', 'Thhalv10024673m.g' => 'esa', 'Thhalv10029187m.g' => 'esa', 'TPR.G12971' => 'tpr', 'TPR.G29396' => 'tpr', 'TPR.G33376' => 'tpr', 'TPR.G35508' => 'tpr', 'TPR.G35516' => 'tpr', 'TPR.G37317' => 'tpr', 'TPR.G37389' => 'tpr', 'TPR.G37523' => 'tpr', 'TPR.G559' => 'tpr', 'TWI14G0070' => 'twi', 'TWI14G0729' => 'twi', 'TWI18G0596' => 'twi', 'TWI39G0780' => 'twi', 'TWI39G0850' => 'twi', 'TWI73G1052' => 'twi', 'unitig_52.g17485' => 'ugi', 'unitig_61.g26355' => 'ugi', 'vmacro01040' => 'vma', 'vmacro16731' => 'vma', 'vmacro18270' => 'vma', 'vmacro19142' => 'vma', 'vmacro19407' => 'vma', 'vmacro19408' => 'vma', 'vmacro21899' => 'vma', 'vmacro21900' => 'vma', 'vmacro21901' => 'vma', 'VMungo0251G0490' => 'vmu', 'VMungo0251G1748' => 'vmu', 'VMungo1309G0421' => 'vmu', 'Zm00001eb086500' => 'zma', 'Zm00001eb150680' => 'zma', 'Zm00001eb162330' => 'zma', 'Zm00001eb203130' => 'zma', 'Zm00001eb369480' => 'zma', 'Zm00001eb382340' => 'zma', 'Zm00001eb416360' => 'zma' ), 'gf_id' => 'HOM05D000902', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000902' ), 'data_identifier' => 'HOM05D000902', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000902', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '663', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02470' => 'bna', 'A01p16260' => 'bna', 'A02p01680' => 'bna', 'A03p16600' => 'bna', 'A03p55660' => 'bna', 'A03p64160' => 'bna', 'A03p64170' => 'bna', 'A08p31900' => 'bna', 'A09p59530' => 'bna', 'A10p08230' => 'bna', 'A10p25090' => 'bna', 'Aa31LG3G7100' => 'aar', 'Aa31LG3G7110' => 'aar', 'Aa31LG6G13160' => 'aar', 'Aa31LG7G10770' => 'aar', 'Aa31LG7G3830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2723' => 'aag', 'Actinidia08045' => 'ach', 'Actinidia08888' => 'ach', 'Actinidia18333' => 'ach', 'Actinidia19334' => 'ach', 'Actinidia25552' => 'ach', 'Actinidia26089' => 'ach', 'Actinidia30615' => 'ach', 'Actinidia30616' => 'ach', 'Actinidia33083' => 'ach', 'Actinidia35762' => 'ach', 'Ah.02g110620' => 'amhyb', 'Ah.11g046390' => 'amhyb', 'AL1G31670' => 'aly', 'AL6G23730' => 'aly', 'AL7G14740' => 'aly', 'AL7G14750' => 'aly', 'AL7G14760' => 'aly', 'AL7G28220' => 'aly', 'AL8G24940' => 'aly', 'Aqoxy3G01665' => 'aox', 'Aqoxy3G02853' => 'aox', 'Aqoxy5G01513' => 'aox', 'Aqoxy5G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8SKA4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ75LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKDA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0LJZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7REX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZP4YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWX7I5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2QKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS0L9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPCD8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q161UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC7XCF' => 'arhy', 'AT1G19100' => 'ath', 'AT4G24970' => 'ath', 'AT4G36270' => 'ath', 'AT4G36280' => 'ath', 'AT4G36290' => 'ath', 'AT5G13130' => 'ath', 'AT5G50780' => 'ath', 'ATR0582G266' => 'atr', 'ATR0661G195' => 'atr', 'ATR1152G031' => 'atr', 'Atru.chr11.2382' => 'acertr', 'Atru.chr12.2337' => 'acertr', 'Atru.chr3.744' => 'acertr', 'Atru.chr6.1870' => 'acertr', 'Atru.chr9.2515' => 'acertr', 'AUR62004120' => 'cqu', 'AUR62005667' => 'cqu', 'AUR62007634' => 'cqu', 'AUR62008186' => 'cqu', 'AUR62008187' => 'cqu', 'AUR62008188' => 'cqu', 'AUR62027954' => 'cqu', 'AUR62028766' => 'cqu', 'AUR62028767' => 'cqu', 'AUR62028768' => 'cqu', 'AUR62028886' => 'cqu', 'AUR62029563' => 'cqu', 'AUR62038832' => 'cqu', 'BcaB01g04149' => 'bca', 'BcaB03g12940' => 'bca', 'BcaB03g13090' => 'bca', 'BcaB03g14466' => 'bca', 'BcaB05g24035' => 'bca', 'BcaC01g06050' => 'bca', 'BcaC04g19148' => 'bca', 'BcaC04g20761' => 'bca', 'BcaC06g32845' => 'bca', 'BcaC07g41274' => 'bca', 'BcaC09g50827' => 'bca', 'BcaNung00741' => 'bca', 'BcaNung00742' => 'bca', 'BcaNung01859' => 'bca', 'BcaNung03985' => 'bca', 'BcaNung03989' => 'bca', 'BcaNung05661' => 'bca', 'BolC1t00257H' => 'bol', 'BolC1t01956H' => 'bol', 'BolC2t06534H' => 'bol', 'BolC3t14334H' => 'bol', 'BolC5t30451H' => 'bol', 'BolC7t45880H' => 'bol', 'BolC7t46586H' => 'bol', 'BolC8t49301H' => 'bol', 'BolC8t51837H' => 'bol', 'BolC9t56822H' => 'bol', 'BolC9t59235H' => 'bol', 'BraA01t00234Z' => 'bra', 'BraA01t01563Z' => 'bra', 'BraA02t05147Z' => 'bra', 'BraA03t10947Z' => 'bra', 'BraA03t14633Z' => 'bra', 'BraA08t35112Z' => 'bra', 'BraA09t41330Z' => 'bra', 'BraA10t44570Z' => 'bra', 'C01p02670' => 'bna', 'C01p20260' => 'bna', 'C02p05890' => 'bna', 'C03p19530' => 'bna', 'C05p17470' => 'bna', 'C07p53900' => 'bna', 'C07p61630' => 'bna', 'C08p16800' => 'bna', 'C08p42810' => 'bna', 'C09p39480' => 'bna', 'C09p63980' => 'bna', 'CAN.G1001.7' => 'can', 'CAN.G1034.55' => 'can', 'CAN.G143.7' => 'can', 'CAN.G3340.1' => 'can', 'CAN.G358.19' => 'can', 'CAN.G373.2' => 'can', 'CAN.G674.16' => 'can', 'CAN.G674.17' => 'can', 'CAN.G674.18' => 'can', 'CAN.G732.2' => 'can', 'CAN.G732.3' => 'can', 'CAN.G993.39' => 'can', 'CANSAT01G2052' => 'cansat', 'CANSAT80G0070' => 'cansat', 'CANSAT80G0483' => 'cansat', 'CANSAT80G0625' => 'cansat', 'CARHR019690' => 'chi', 'CARHR080280' => 'chi', 'CARHR152750' => 'chi', 'CARHR152760' => 'chi', 'CARHR152770' => 'chi', 'CARHR200340' => 'chi', 'CARHR232370' => 'chi', 'CARHR244670' => 'chi', 'CARHR244680' => 'chi', 'CARHR257520' => 'chi', 'Carub.0001s1872' => 'cru', 'Carub.0006s1130' => 'cru', 'Carub.0007s0396' => 'cru', 'Carub.0007s0397' => 'cru', 'Carub.0007s1608' => 'cru', 'Carub.0008s1068' => 'cru', 'Carub.0008s1077' => 'cru', 'Ca_16158_v3' => 'car', 'Ca_17571_v3' => 'car', 'Ca_21936_v3' => 'car', 'Ca_22350_v3' => 'car', 'CBR_g22445' => 'cbr', 'CBR_g26290' => 'cbr', 'Cc04_g09610' => 'ccan', 'Cc04_g12280' => 'ccan', 'Cc07_g10230' => 'ccan', 'CDE02G0093' => 'cde', 'CDE02G0701' => 'cde', 'CDE04G1050' => 'cde', 'CDE05G1833' => 'cde', 'CDE05G3058' => 'cde', 'CDE05G3380' => 'cde', 'CDE06G0536' => 'cde', 'Cfa006923' => 'cfa', 'Cfa009402' => 'cfa', 'Cfa018751' => 'cfa', 'Cfa019164' => 'cfa', 'Cfa022935' => 'cfa', 'Ciclev10019081m.g' => 'ccl', 'Ciclev10025076m.g' => 'ccl', 'Ciclev10030712m.g' => 'ccl', 'Ciclev10033760m.g' => 'ccl', 'CiPaw.05G105600' => 'cil', 'CiPaw.08G136700' => 'cil', 'CiPaw.11G003900' => 'cil', 'CiPaw.11G023700' => 'cil', 'CiPaw.12G003700' => 'cil', 'ClCG06G017100' => 'cla', 'ClCG06G018110' => 'cla', 'ClCG07G008800' => 'cla', 'ClCG07G015330' => 'cla', 'COL.COLO4_13698' => 'col', 'COL.COLO4_16659' => 'col', 'COL.COLO4_21986' => 'col', 'COL.COLO4_24049' => 'col', 'COL.COLO4_29061' => 'col', 'COL.COLO4_29075' => 'col', 'COL.COLO4_30094' => 'col', 'Cpa.g.c33689' => 'cpa', 'Cpa.g.sc108.39' => 'cpa', 'Cpa.g.sc108.41' => 'cpa', 'Cpa.g.sc1163.1' => 'cpa', 'Cpa.g.sc4.155' => 'cpa', 'Cpa.g.sc6.194' => 'cpa', 'CsaV3_1G000340' => 'csa', 'CsaV3_1G001400' => 'csa', 'CsaV3_4G002220' => 'csa', 'CsaV3_4G005370' => 'csa', 'CSS0007487' => 'camsi', 'CSS0008066' => 'camsi', 'CSS0009120' => 'camsi', 'CSS0015512' => 'camsi', 'CSS0022409' => 'camsi', 'CSS0025358' => 'camsi', 'CSS0044547' => 'camsi', 'DCAR_013057' => 'dca', 'DCAR_015058' => 'dca', 'DCAR_016027' => 'dca', 'DCAR_017327' => 'dca', 'DCAR_020743' => 'dca', 'DCAR_026157' => 'dca', 'DCAR_032339' => 'dca', 'DCAR_032340' => 'dca', 'Dinv11200' => 'din', 'Dinv11201' => 'din', 'Dinv20631' => 'din', 'Dinv23182' => 'din', 'Dinv33466' => 'din', 'Dinv33583' => 'din', 'Dinv38565' => 'din', 'Duzib068G0200' => 'dzi', 'Duzib147G0132' => 'dzi', 'Duzib147G0635' => 'dzi', 'Duzib205G1670' => 'dzi', 'Duzib251G0606' => 'dzi', 'ECA232G3336' => 'eca', 'ECA232G3763' => 'eca', 'ECA232G4845' => 'eca', 'ECA234G1607' => 'eca', 'ECA246G0932' => 'eca', 'ECA247G0781' => 'eca', 'ECA247G1932' => 'eca', 'ECA247G2079' => 'eca', 'ECA247G3338' => 'eca', 'ECA247G4115' => 'eca', 'EL10Ac3g06552' => 'bvu', 'EL10Ac5g10721' => 'bvu', 'EL10Ac5g10722' => 'bvu', 'EL10Ac5g10723' => 'bvu', 'EL10Ac5g11361' => 'bvu', 'EL10Ac6g13553' => 'bvu', 'EL10As8g23872' => 'bvu', 'Eucgr.B00250' => 'egr', 'Eucgr.B00251' => 'egr', 'Eucgr.B03533' => 'egr', 'Eucgr.I02381' => 'egr', 'Eucgr.K02700' => 'egr', 'FAN02G0174' => 'fan', 'FAN02G3146' => 'fan', 'FAN04G1672' => 'fan', 'FAN04G2273' => 'fan', 'FAN05G2791' => 'fan', 'FAN05G4035' => 'fan', 'FAN07G0834' => 'fan', 'FAN08G1198' => 'fan', 'FAN09G4182' => 'fan', 'FAN12G0496' => 'fan', 'FAN13G1027' => 'fan', 'FAN13G2951' => 'fan', 'FAN14G0705' => 'fan', 'FAN14G0720' => 'fan', 'FAN17G0201' => 'fan', 'FAN17G2665' => 'fan', 'FAN18G1456' => 'fan', 'FAN18G1525' => 'fan', 'FAN18G3500' => 'fan', 'FAN28G2670' => 'fan', 'FvH4_1g12391' => 'fve', 'FvH4_4g23220' => 'fve', 'FvH4_5g08810' => 'fve', 'FvH4_5g28960' => 'fve', 'FvH4_6g42820' => 'fve', 'FvH4_6g51110' => 'fve', 'Glyma.02G051802' => 'gma', 'Glyma.04G185300' => 'gma', 'Glyma.05G202900' => 'gma', 'Glyma.08G010300' => 'gma', 'Glyma.16G131900' => 'gma', 'Glyma.17G087900' => 'gma', 'Gohir.A07G048600' => 'ghi', 'Gohir.A11G179000' => 'ghi', 'Gohir.A12G140900' => 'ghi', 'Gohir.A12G140950' => 'ghi', 'Gohir.A12G191700' => 'ghi', 'Gohir.A13G086300' => 'ghi', 'Gohir.D07G052900' => 'ghi', 'Gohir.D11G186600' => 'ghi', 'Gohir.D12G145575' => 'ghi', 'Gohir.D12G145650' => 'ghi', 'Gohir.D12G145725' => 'ghi', 'Gohir.D12G194050' => 'ghi', 'Gohir.D13G091800' => 'ghi', 'Gorai.001G055900' => 'gra', 'Gorai.007G198400' => 'gra', 'Gorai.008G157000' => 'gra', 'Gorai.008G157100' => 'gra', 'Gorai.008G208700' => 'gra', 'Gorai.010G138700' => 'gra', 'GSVIVG01000977001' => 'vvi', 'GSVIVG01007708001' => 'vvi', 'GSVIVG01008587001' => 'vvi', 'GSVIVG01018849001' => 'vvi', 'GSVIVG01032432001' => 'vvi', 'HanXRQChr02g0034131' => 'han', 'HanXRQChr02g0035981' => 'han', 'HanXRQChr02g0035991' => 'han', 'HanXRQChr05g0155611' => 'han', 'HanXRQChr05g0155621' => 'han', 'HanXRQChr08g0236501' => 'han', 'HanXRQChr09g0261321' => 'han', 'HanXRQChr09g0272081' => 'han', 'HanXRQChr10g0310741' => 'han', 'HanXRQChr11g0325591' => 'han', 'HanXRQChr12g0385691' => 'han', 'HanXRQChr13g0387801' => 'han', 'HanXRQChr15g0463011' => 'han', 'Haze_03826' => 'cav', 'Haze_03827' => 'cav', 'Haze_07183' => 'cav', 'Haze_07537' => 'cav', 'Haze_07539' => 'cav', 'Haze_12461' => 'cav', 'Haze_16115' => 'cav', 'Haze_16808' => 'cav', 'Haze_18531' => 'cav', 'Hma1.2p1_0046F.1_g026700' => 'hma', 'Hma1.2p1_0046F.1_g026710' => 'hma', 'Hma1.2p1_0168F.1_g074340' => 'hma', 'Hma1.2p1_0266F.1_g107030' => 'hma', 'Hma1.2p1_0266F.1_g107060' => 'hma', 'Hma1.2p1_0275F.1_g110510' => 'hma', 'Hma1.2p1_0592F.1_g185490' => 'hma', 'Hma1.2p1_0592F.1_g185500' => 'hma', 'Hma1.2p1_0592F.1_g185510' => 'hma', 'Hma1.2p1_0592F.1_g185520' => 'hma', 'Hma1.2p1_0592F.1_g185530' => 'hma', 'Hma1.2p1_0818F.1_g223450' => 'hma', 'HPP92_009708' => 'vpl', 'HPP92_009793' => 'vpl', 'HPP92_009796' => 'vpl', 'HPP92_009797' => 'vpl', 'HPP92_014940' => 'vpl', 'HPP92_014988' => 'vpl', 'Hund02463' => 'sun', 'Hund02760' => 'sun', 'Hund05071' => 'sun', 'Hund10108' => 'sun', 'Hund11204' => 'sun', 'Hund14016' => 'sun', 'Hund16464' => 'sun', 'Lalb_Chr09g0333391' => 'lal', 'Lalb_Chr11g0070461' => 'lal', 'Lalb_Chr12g0201671' => 'lal', 'Lalb_Chr13g0297161' => 'lal', 'Lj1g0002823' => 'lja', 'Lj3C1074T6' => 'lonja', 'Lj4A212T28' => 'lonja', 'Lj4g0005516' => 'lja', 'Lj4g0013705' => 'lja', 'Lj4g0027865' => 'lja', 'Lj5C92G16' => 'lonja', 'Lj5C92T12' => 'lonja', 'Lj7C596T3' => 'lonja', 'Lj9A446G59' => 'lonja', 'Lj9A482G21' => 'lonja', 'Lsat_1_v5_gn_1_28261' => 'lsa', 'Lsat_1_v5_gn_1_28281' => 'lsa', 'Lsat_1_v5_gn_1_32721' => 'lsa', 'Lsat_1_v5_gn_4_151760' => 'lsa', 'Lsat_1_v5_gn_4_2120' => 'lsa', 'Lsat_1_v5_gn_4_75761' => 'lsa', 'Lsat_1_v5_gn_5_10920' => 'lsa', 'Manes.02G099900' => 'mes', 'Manes.11G096200' => 'mes', 'Manes.12G007200' => 'mes', 'Manes.14G048300' => 'mes', 'Manes.17G114700' => 'mes', 'Mapoly0002s0070' => 'mpo', 'Mapoly0029s0099' => 'mpo', 'MBI07_g24742_MAGBIO' => 'mbi', 'MBI10_g27988_MAGBIO' => 'mbi', 'MBI11_g13057_MAGBIO' => 'mbi', 'MD02G1137200' => 'mdo', 'MD06G1137200' => 'mdo', 'MD07G1122300' => 'mdo', 'MD09G1078200' => 'mdo', 'MD13G1123700' => 'mdo', 'MD14G1151900' => 'mdo', 'MD17G1030900' => 'mdo', 'MD17G1068200' => 'mdo', 'MD17G1068600' => 'mdo', 'Medtr3g077540' => 'mtr', 'Medtr4g105530' => 'mtr', 'Medtr8g076580' => 'mtr', 'Medtr8g076590' => 'mtr', 'Medtr8g096410' => 'mtr', 'MELO3C016411.2' => 'cme', 'MELO3C017780.2' => 'cme', 'MELO3C022560.2' => 'cme', 'MELO3C026187.2' => 'cme', 'MELO3C026286.2' => 'cme', 'MELO3C032854.2' => 'cme', 'Migut.H02495' => 'egut', 'Migut.I00561' => 'egut', 'Migut.K01015' => 'egut', 'Migut.K01016' => 'egut', 'Migut.L00743' => 'egut', 'Migut.L00744' => 'egut', 'Migut.L00746' => 'egut', 'Migut.L00798' => 'egut', 'Migut.L00799' => 'egut', 'Migut.N02096' => 'egut', 'MSTRG.11259' => 'ama', 'MSTRG.23142' => 'ama', 'MSTRG.2499' => 'ama', 'Nitab4.5_0000003g0730' => 'nta', 'Nitab4.5_0000137g0020' => 'nta', 'Nitab4.5_0000721g0210' => 'nta', 'Nitab4.5_0000723g0050' => 'nta', 'Nitab4.5_0000913g0070' => 'nta', 'Nitab4.5_0001332g0040' => 'nta', 'Nitab4.5_0001771g0050' => 'nta', 'Nitab4.5_0001918g0050' => 'nta', 'Nitab4.5_0002686g0030' => 'nta', 'Nitab4.5_0003156g0020' => 'nta', 'Nitab4.5_0003383g0040' => 'nta', 'Nitab4.5_0003918g0010' => 'nta', 'Nitab4.5_0006760g0010' => 'nta', 'Nn1g05981' => 'nnu', 'Nn1g06288' => 'nnu', 'Nn3g16371' => 'nnu', 'Nn3g16786' => 'nnu', 'Nn4g22232' => 'nnu', 'Oeu005144.1' => 'oeu', 'Oeu005145.1' => 'oeu', 'Oeu011348.1' => 'oeu', 'Oeu016415.1' => 'oeu', 'Oeu023501.1' => 'oeu', 'Oeu044473.1' => 'oeu', 'Oeu048892.2' => 'oeu', 'Os01g0549200' => 'osa', 'Os02g0469300' => 'osa', 'Os04g0311100' => 'osa', 'Os06g0474900' => 'osa', 'Os10g0181700' => 'osa', 'Os11g0454800' => 'osa', 'Peaxi162Scf00037g00714' => 'pax', 'Peaxi162Scf00084g01217' => 'pax', 'Peaxi162Scf00257g00217' => 'pax', 'Peaxi162Scf00516g00215' => 'pax', 'Peaxi162Scf00689g00123' => 'pax', 'PGR044G2719' => 'pgr', 'PGR083G1360' => 'pgr', 'PGR102G2849' => 'pgr', 'PGR119G2534' => 'pgr', 'PGSC0003DMG400003538' => 'stu', 'PGSC0003DMG400028138' => 'stu', 'PGSC0003DMG400031732' => 'stu', 'PGSC0003DMG400038165' => 'stu', 'Phvul.002G284600' => 'pvu', 'Phvul.003G258200' => 'pvu', 'Phvul.009G176500' => 'pvu', 'Potri.003G167201' => 'ptr', 'Potri.005G118400' => 'ptr', 'Potri.012G089000' => 'ptr', 'Potri.012G102800' => 'ptr', 'Potri.015G079400' => 'ptr', 'Potri.015G100900' => 'ptr', 'Pp3c14_9810' => 'ppa', 'Pp3c15_10450' => 'ppa', 'Pp3c20_19150' => 'ppa', 'Pp3c23_12740' => 'ppa', 'Pp3c23_6310' => 'ppa', 'Pp3c24_3720' => 'ppa', 'Pp3c27_2580' => 'ppa', 'Pp3c9_8990' => 'ppa', 'PRCOL_00002854' => 'pco', 'Prupe.1G221200' => 'ppe', 'Prupe.3G289000' => 'ppe', 'Prupe.5G147000' => 'ppe', 'Prupe.6G157300' => 'ppe', 'Prupe.7G163400' => 'ppe', 'Psat0s2177g0040' => 'psa', 'Psat3g174760' => 'psa', 'Psat3g192160' => 'psa', 'Psat4g058520' => 'psa', 'Psat4g096840' => 'psa', 'Psat7g037320' => 'psa', 'PSO017G1274' => 'pso', 'PSO017G5166' => 'pso', 'PSO063G4558' => 'pso', 'PSO170G4458' => 'pso', 'PSO170G5005' => 'pso', 'PSO210G6156' => 'pso', 'PSO210G6635' => 'pso', 'PSO210G7397' => 'pso', 'PSO210G7700' => 'pso', 'PSO455G0035' => 'pso', 'PSO455G0180' => 'pso', 'PSO478G4515' => 'pso', 'PSO832G1305' => 'pso', 'PSO832G3489' => 'pso', 'QL02p075247' => 'qlo', 'QL03p051148' => 'qlo', 'QL05p010313' => 'qlo', 'QL06p034627' => 'qlo', 'QL10p001889' => 'qlo', 'QL10p010846' => 'qlo', 'RcHm_v2.0_Chr1g0350621' => 'rch', 'RcHm_v2.0_Chr1g0350641' => 'rch', 'RcHm_v2.0_Chr2g0092891' => 'rch', 'RcHm_v2.0_Chr2g0100251' => 'rch', 'RcHm_v2.0_Chr2g0158661' => 'rch', 'RcHm_v2.0_Chr2g0172741' => 'rch', 'RcHm_v2.0_Chr4g0429571' => 'rch', 'RcHm_v2.0_Chr5g0042471' => 'rch', 'RcHm_v2.0_Chr7g0189451' => 'rch', 'Rhsim08G0052000' => 'rsi', 'Rhsim08G0174400' => 'rsi', 'Rhsim08G0193200' => 'rsi', 'Rhsim10G0214800' => 'rsi', 'Rhsim10G0214900' => 'rsi', 'Rhsim10G0215000' => 'rsi', 'Rhsim12G0022900' => 'rsi', 'Rhsim12G0177500' => 'rsi', 'Rhsim12G0177700' => 'rsi', 'Sabra03G0122600' => 'sbr', 'Sabra05G0097400' => 'sbr', 'Sabra12G0064100' => 'sbr', 'Sabra15G0121300' => 'sbr', 'SalBow2G0642' => 'sbo', 'SalBow5G2667' => 'sbo', 'SalBow5G4873' => 'sbo', 'SalBow8G2395' => 'sbo', 'Sc03g0003290' => 'sci', 'Sc10g0010130' => 'sci', 'Sc22g0003650' => 'sci', 'Sed0001603' => 'sed', 'Sed0004259' => 'sed', 'Sed0006789' => 'sed', 'Sed0011838' => 'sed', 'Sed0012964' => 'sed', 'Sed0016383' => 'sed', 'Sed0019010' => 'sed', 'Sed0020188' => 'sed', 'SEGI_04702' => 'sgi', 'SEGI_17231' => 'sgi', 'SEGI_18877' => 'sgi', 'SEGI_25196' => 'sgi', 'SEGI_25515' => 'sgi', 'SEGI_28445' => 'sgi', 'SEGI_37452' => 'sgi', 'SGA_v2.0_scaffold188G40336' => 'sas', 'SGA_v2.0_scaffold228G43247' => 'sas', 'SGA_v2.0_scaffold280G46853' => 'sas', 'SGA_v2.0_scaffold34G13808' => 'sas', 'SGA_v2.0_scaffold40G15576' => 'sas', 'SGA_v2.0_scaffold611G53188' => 'sas', 'SGA_v2.0_scaffold78G25461' => 'sas', 'SGA_v2.0_scaffold90G27888' => 'sas', 'SHI08601' => 'shi', 'SHI08606' => 'shi', 'SHI17117' => 'shi', 'SHI17119' => 'shi', 'SMO118G0201' => 'smo', 'SMO169G0247' => 'smo', 'SMO176G0006' => 'smo', 'SMO176G0015' => 'smo', 'SMO202G0006' => 'smo', 'SMO240G0050' => 'smo', 'SMO286G0009' => 'smo', 'SMO338G0033' => 'smo', 'SMO356G0533' => 'smo', 'SMO364G0382' => 'smo', 'SMO367G0166' => 'smo', 'SMO367G1098' => 'smo', 'Solyc01g009920.3' => 'sly', 'Solyc01g099300.3' => 'sly', 'Solyc02g084700.3' => 'sly', 'Solyc03g097520.3' => 'sly', 'Solyc06g071580.3' => 'sly', 'Solyc10g081760.3' => 'sly', 'Sopen01g005480' => 'spe', 'Sopen01g042850' => 'spe', 'Sopen02g029370' => 'spe', 'Sopen03g028280' => 'spe', 'Sopen06g027870' => 'spe', 'Sopen10g032270' => 'spe', 'Sp5g18180' => 'spa', 'Sp6g12880' => 'spa', 'Sp6g30850' => 'spa', 'Sp7g22960' => 'spa', 'Sp7g34010' => 'spa', 'SpUn1326_0010' => 'spa', 'TAR371G0242' => 'tar', 'TAR622G0638' => 'tar', 'TAR628G1548' => 'tar', 'TAR629G1079' => 'tar', 'TAR629G3413' => 'tar', 'THA.LOC104804249' => 'tha', 'THA.LOC104808315' => 'tha', 'THA.LOC104809238' => 'tha', 'THA.LOC104825484' => 'tha', 'Thecc.01G025500' => 'tca', 'Thecc.03G015800' => 'tca', 'Thecc.03G018000' => 'tca', 'Thecc.03G134800' => 'tca', 'Thecc.04G014700' => 'tca', 'Thhalv10006991m.g' => 'esa', 'Thhalv10012707m.g' => 'esa', 'Thhalv10015739m.g' => 'esa', 'Thhalv10024553m.g' => 'esa', 'Thhalv10024673m.g' => 'esa', 'Thhalv10029187m.g' => 'esa', 'TPR.G12971' => 'tpr', 'TPR.G29396' => 'tpr', 'TPR.G33376' => 'tpr', 'TPR.G35508' => 'tpr', 'TPR.G35516' => 'tpr', 'TPR.G37317' => 'tpr', 'TPR.G37389' => 'tpr', 'TPR.G37523' => 'tpr', 'TPR.G559' => 'tpr', 'TWI14G0070' => 'twi', 'TWI14G0729' => 'twi', 'TWI18G0596' => 'twi', 'TWI39G0780' => 'twi', 'TWI39G0850' => 'twi', 'TWI73G1052' => 'twi', 'unitig_52.g17485' => 'ugi', 'unitig_61.g26355' => 'ugi', 'vmacro01040' => 'vma', 'vmacro16731' => 'vma', 'vmacro18270' => 'vma', 'vmacro19142' => 'vma', 'vmacro19407' => 'vma', 'vmacro19408' => 'vma', 'vmacro21899' => 'vma', 'vmacro21900' => 'vma', 'vmacro21901' => 'vma', 'VMungo0251G0490' => 'vmu', 'VMungo0251G1748' => 'vmu', 'VMungo1309G0421' => 'vmu', 'Zm00001eb086500' => 'zma', 'Zm00001eb150680' => 'zma', 'Zm00001eb162330' => 'zma', 'Zm00001eb203130' => 'zma', 'Zm00001eb369480' => 'zma', 'Zm00001eb382340' => 'zma', 'Zm00001eb416360' => 'zma' ) $gf_id = 'HOM05D000902' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000902' ) $data_identifier = 'HOM05D000902' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 13, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 10, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 6, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 9, 'hma' => (int) 12, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 4, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 6, 'ppa' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 6, 'rch' => (int) 9, 'rsi' => (int) 9, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 12, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 3, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416360' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000902', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '663', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02470' => 'bna', 'A01p16260' => 'bna', 'A02p01680' => 'bna', 'A03p16600' => 'bna', 'A03p55660' => 'bna', 'A03p64160' => 'bna', 'A03p64170' => 'bna', 'A08p31900' => 'bna', 'A09p59530' => 'bna', 'A10p08230' => 'bna', 'A10p25090' => 'bna', 'Aa31LG3G7100' => 'aar', 'Aa31LG3G7110' => 'aar', 'Aa31LG6G13160' => 'aar', 'Aa31LG7G10770' => 'aar', 'Aa31LG7G3830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2723' => 'aag', 'Actinidia08045' => 'ach', 'Actinidia08888' => 'ach', 'Actinidia18333' => 'ach', 'Actinidia19334' => 'ach', 'Actinidia25552' => 'ach', 'Actinidia26089' => 'ach', 'Actinidia30615' => 'ach', 'Actinidia30616' => 'ach', 'Actinidia33083' => 'ach', 'Actinidia35762' => 'ach', 'Ah.02g110620' => 'amhyb', 'Ah.11g046390' => 'amhyb', 'AL1G31670' => 'aly', 'AL6G23730' => 'aly', 'AL7G14740' => 'aly', 'AL7G14750' => 'aly', 'AL7G14760' => 'aly', 'AL7G28220' => 'aly', 'AL8G24940' => 'aly', 'Aqoxy3G01665' => 'aox', 'Aqoxy3G02853' => 'aox', 'Aqoxy5G01513' => 'aox', 'Aqoxy5G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8SKA4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ75LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKDA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0LJZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7REX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZP4YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWX7I5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2QKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS0L9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPCD8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q161UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC7XCF' => 'arhy', 'AT1G19100' => 'ath', 'AT4G24970' => 'ath', 'AT4G36270' => 'ath', 'AT4G36280' => 'ath', 'AT4G36290' => 'ath', 'AT5G13130' => 'ath', 'AT5G50780' => 'ath', 'ATR0582G266' => 'atr', 'ATR0661G195' => 'atr', 'ATR1152G031' => 'atr', 'Atru.chr11.2382' => 'acertr', 'Atru.chr12.2337' => 'acertr', 'Atru.chr3.744' => 'acertr', 'Atru.chr6.1870' => 'acertr', 'Atru.chr9.2515' => 'acertr', 'AUR62004120' => 'cqu', 'AUR62005667' => 'cqu', 'AUR62007634' => 'cqu', 'AUR62008186' => 'cqu', 'AUR62008187' => 'cqu', 'AUR62008188' => 'cqu', 'AUR62027954' => 'cqu', 'AUR62028766' => 'cqu', 'AUR62028767' => 'cqu', 'AUR62028768' => 'cqu', 'AUR62028886' => 'cqu', 'AUR62029563' => 'cqu', 'AUR62038832' => 'cqu', 'BcaB01g04149' => 'bca', 'BcaB03g12940' => 'bca', 'BcaB03g13090' => 'bca', 'BcaB03g14466' => 'bca', 'BcaB05g24035' => 'bca', 'BcaC01g06050' => 'bca', 'BcaC04g19148' => 'bca', 'BcaC04g20761' => 'bca', 'BcaC06g32845' => 'bca', 'BcaC07g41274' => 'bca', 'BcaC09g50827' => 'bca', 'BcaNung00741' => 'bca', 'BcaNung00742' => 'bca', 'BcaNung01859' => 'bca', 'BcaNung03985' => 'bca', 'BcaNung03989' => 'bca', 'BcaNung05661' => 'bca', 'BolC1t00257H' => 'bol', 'BolC1t01956H' => 'bol', 'BolC2t06534H' => 'bol', 'BolC3t14334H' => 'bol', 'BolC5t30451H' => 'bol', 'BolC7t45880H' => 'bol', 'BolC7t46586H' => 'bol', 'BolC8t49301H' => 'bol', 'BolC8t51837H' => 'bol', 'BolC9t56822H' => 'bol', 'BolC9t59235H' => 'bol', 'BraA01t00234Z' => 'bra', 'BraA01t01563Z' => 'bra', 'BraA02t05147Z' => 'bra', 'BraA03t10947Z' => 'bra', 'BraA03t14633Z' => 'bra', 'BraA08t35112Z' => 'bra', 'BraA09t41330Z' => 'bra', 'BraA10t44570Z' => 'bra', 'C01p02670' => 'bna', 'C01p20260' => 'bna', 'C02p05890' => 'bna', 'C03p19530' => 'bna', 'C05p17470' => 'bna', 'C07p53900' => 'bna', 'C07p61630' => 'bna', 'C08p16800' => 'bna', 'C08p42810' => 'bna', 'C09p39480' => 'bna', 'C09p63980' => 'bna', 'CAN.G1001.7' => 'can', 'CAN.G1034.55' => 'can', 'CAN.G143.7' => 'can', 'CAN.G3340.1' => 'can', 'CAN.G358.19' => 'can', 'CAN.G373.2' => 'can', 'CAN.G674.16' => 'can', 'CAN.G674.17' => 'can', 'CAN.G674.18' => 'can', 'CAN.G732.2' => 'can', 'CAN.G732.3' => 'can', 'CAN.G993.39' => 'can', 'CANSAT01G2052' => 'cansat', 'CANSAT80G0070' => 'cansat', 'CANSAT80G0483' => 'cansat', 'CANSAT80G0625' => 'cansat', 'CARHR019690' => 'chi', 'CARHR080280' => 'chi', 'CARHR152750' => 'chi', 'CARHR152760' => 'chi', 'CARHR152770' => 'chi', 'CARHR200340' => 'chi', 'CARHR232370' => 'chi', 'CARHR244670' => 'chi', 'CARHR244680' => 'chi', 'CARHR257520' => 'chi', 'Carub.0001s1872' => 'cru', 'Carub.0006s1130' => 'cru', 'Carub.0007s0396' => 'cru', 'Carub.0007s0397' => 'cru', 'Carub.0007s1608' => 'cru', 'Carub.0008s1068' => 'cru', 'Carub.0008s1077' => 'cru', 'Ca_16158_v3' => 'car', 'Ca_17571_v3' => 'car', 'Ca_21936_v3' => 'car', 'Ca_22350_v3' => 'car', 'CBR_g22445' => 'cbr', 'CBR_g26290' => 'cbr', 'Cc04_g09610' => 'ccan', 'Cc04_g12280' => 'ccan', 'Cc07_g10230' => 'ccan', 'CDE02G0093' => 'cde', 'CDE02G0701' => 'cde', 'CDE04G1050' => 'cde', 'CDE05G1833' => 'cde', 'CDE05G3058' => 'cde', 'CDE05G3380' => 'cde', 'CDE06G0536' => 'cde', 'Cfa006923' => 'cfa', 'Cfa009402' => 'cfa', 'Cfa018751' => 'cfa', 'Cfa019164' => 'cfa', 'Cfa022935' => 'cfa', 'Ciclev10019081m.g' => 'ccl', 'Ciclev10025076m.g' => 'ccl', 'Ciclev10030712m.g' => 'ccl', 'Ciclev10033760m.g' => 'ccl', 'CiPaw.05G105600' => 'cil', 'CiPaw.08G136700' => 'cil', 'CiPaw.11G003900' => 'cil', 'CiPaw.11G023700' => 'cil', 'CiPaw.12G003700' => 'cil', 'ClCG06G017100' => 'cla', 'ClCG06G018110' => 'cla', 'ClCG07G008800' => 'cla', 'ClCG07G015330' => 'cla', 'COL.COLO4_13698' => 'col', 'COL.COLO4_16659' => 'col', 'COL.COLO4_21986' => 'col', 'COL.COLO4_24049' => 'col', 'COL.COLO4_29061' => 'col', 'COL.COLO4_29075' => 'col', 'COL.COLO4_30094' => 'col', 'Cpa.g.c33689' => 'cpa', 'Cpa.g.sc108.39' => 'cpa', 'Cpa.g.sc108.41' => 'cpa', 'Cpa.g.sc1163.1' => 'cpa', 'Cpa.g.sc4.155' => 'cpa', 'Cpa.g.sc6.194' => 'cpa', 'CsaV3_1G000340' => 'csa', 'CsaV3_1G001400' => 'csa', 'CsaV3_4G002220' => 'csa', 'CsaV3_4G005370' => 'csa', 'CSS0007487' => 'camsi', 'CSS0008066' => 'camsi', 'CSS0009120' => 'camsi', 'CSS0015512' => 'camsi', 'CSS0022409' => 'camsi', 'CSS0025358' => 'camsi', 'CSS0044547' => 'camsi', 'DCAR_013057' => 'dca', 'DCAR_015058' => 'dca', 'DCAR_016027' => 'dca', 'DCAR_017327' => 'dca', 'DCAR_020743' => 'dca', 'DCAR_026157' => 'dca', 'DCAR_032339' => 'dca', 'DCAR_032340' => 'dca', 'Dinv11200' => 'din', 'Dinv11201' => 'din', 'Dinv20631' => 'din', 'Dinv23182' => 'din', 'Dinv33466' => 'din', 'Dinv33583' => 'din', 'Dinv38565' => 'din', 'Duzib068G0200' => 'dzi', 'Duzib147G0132' => 'dzi', 'Duzib147G0635' => 'dzi', 'Duzib205G1670' => 'dzi', 'Duzib251G0606' => 'dzi', 'ECA232G3336' => 'eca', 'ECA232G3763' => 'eca', 'ECA232G4845' => 'eca', 'ECA234G1607' => 'eca', 'ECA246G0932' => 'eca', 'ECA247G0781' => 'eca', 'ECA247G1932' => 'eca', 'ECA247G2079' => 'eca', 'ECA247G3338' => 'eca', 'ECA247G4115' => 'eca', 'EL10Ac3g06552' => 'bvu', 'EL10Ac5g10721' => 'bvu', 'EL10Ac5g10722' => 'bvu', 'EL10Ac5g10723' => 'bvu', 'EL10Ac5g11361' => 'bvu', 'EL10Ac6g13553' => 'bvu', 'EL10As8g23872' => 'bvu', 'Eucgr.B00250' => 'egr', 'Eucgr.B00251' => 'egr', 'Eucgr.B03533' => 'egr', 'Eucgr.I02381' => 'egr', 'Eucgr.K02700' => 'egr', 'FAN02G0174' => 'fan', 'FAN02G3146' => 'fan', 'FAN04G1672' => 'fan', 'FAN04G2273' => 'fan', 'FAN05G2791' => 'fan', 'FAN05G4035' => 'fan', 'FAN07G0834' => 'fan', 'FAN08G1198' => 'fan', 'FAN09G4182' => 'fan', 'FAN12G0496' => 'fan', 'FAN13G1027' => 'fan', 'FAN13G2951' => 'fan', 'FAN14G0705' => 'fan', 'FAN14G0720' => 'fan', 'FAN17G0201' => 'fan', 'FAN17G2665' => 'fan', 'FAN18G1456' => 'fan', 'FAN18G1525' => 'fan', 'FAN18G3500' => 'fan', 'FAN28G2670' => 'fan', 'FvH4_1g12391' => 'fve', 'FvH4_4g23220' => 'fve', 'FvH4_5g08810' => 'fve', 'FvH4_5g28960' => 'fve', 'FvH4_6g42820' => 'fve', 'FvH4_6g51110' => 'fve', 'Glyma.02G051802' => 'gma', 'Glyma.04G185300' => 'gma', 'Glyma.05G202900' => 'gma', 'Glyma.08G010300' => 'gma', 'Glyma.16G131900' => 'gma', 'Glyma.17G087900' => 'gma', 'Gohir.A07G048600' => 'ghi', 'Gohir.A11G179000' => 'ghi', 'Gohir.A12G140900' => 'ghi', 'Gohir.A12G140950' => 'ghi', 'Gohir.A12G191700' => 'ghi', 'Gohir.A13G086300' => 'ghi', 'Gohir.D07G052900' => 'ghi', 'Gohir.D11G186600' => 'ghi', 'Gohir.D12G145575' => 'ghi', 'Gohir.D12G145650' => 'ghi', 'Gohir.D12G145725' => 'ghi', 'Gohir.D12G194050' => 'ghi', 'Gohir.D13G091800' => 'ghi', 'Gorai.001G055900' => 'gra', 'Gorai.007G198400' => 'gra', 'Gorai.008G157000' => 'gra', 'Gorai.008G157100' => 'gra', 'Gorai.008G208700' => 'gra', 'Gorai.010G138700' => 'gra', 'GSVIVG01000977001' => 'vvi', 'GSVIVG01007708001' => 'vvi', 'GSVIVG01008587001' => 'vvi', 'GSVIVG01018849001' => 'vvi', 'GSVIVG01032432001' => 'vvi', 'HanXRQChr02g0034131' => 'han', 'HanXRQChr02g0035981' => 'han', 'HanXRQChr02g0035991' => 'han', 'HanXRQChr05g0155611' => 'han', 'HanXRQChr05g0155621' => 'han', 'HanXRQChr08g0236501' => 'han', 'HanXRQChr09g0261321' => 'han', 'HanXRQChr09g0272081' => 'han', 'HanXRQChr10g0310741' => 'han', 'HanXRQChr11g0325591' => 'han', 'HanXRQChr12g0385691' => 'han', 'HanXRQChr13g0387801' => 'han', 'HanXRQChr15g0463011' => 'han', 'Haze_03826' => 'cav', 'Haze_03827' => 'cav', 'Haze_07183' => 'cav', 'Haze_07537' => 'cav', 'Haze_07539' => 'cav', 'Haze_12461' => 'cav', 'Haze_16115' => 'cav', 'Haze_16808' => 'cav', 'Haze_18531' => 'cav', 'Hma1.2p1_0046F.1_g026700' => 'hma', 'Hma1.2p1_0046F.1_g026710' => 'hma', 'Hma1.2p1_0168F.1_g074340' => 'hma', 'Hma1.2p1_0266F.1_g107030' => 'hma', 'Hma1.2p1_0266F.1_g107060' => 'hma', 'Hma1.2p1_0275F.1_g110510' => 'hma', 'Hma1.2p1_0592F.1_g185490' => 'hma', 'Hma1.2p1_0592F.1_g185500' => 'hma', 'Hma1.2p1_0592F.1_g185510' => 'hma', 'Hma1.2p1_0592F.1_g185520' => 'hma', 'Hma1.2p1_0592F.1_g185530' => 'hma', 'Hma1.2p1_0818F.1_g223450' => 'hma', 'HPP92_009708' => 'vpl', 'HPP92_009793' => 'vpl', 'HPP92_009796' => 'vpl', 'HPP92_009797' => 'vpl', 'HPP92_014940' => 'vpl', 'HPP92_014988' => 'vpl', 'Hund02463' => 'sun', 'Hund02760' => 'sun', 'Hund05071' => 'sun', 'Hund10108' => 'sun', 'Hund11204' => 'sun', 'Hund14016' => 'sun', 'Hund16464' => 'sun', 'Lalb_Chr09g0333391' => 'lal', 'Lalb_Chr11g0070461' => 'lal', 'Lalb_Chr12g0201671' => 'lal', 'Lalb_Chr13g0297161' => 'lal', 'Lj1g0002823' => 'lja', 'Lj3C1074T6' => 'lonja', 'Lj4A212T28' => 'lonja', 'Lj4g0005516' => 'lja', 'Lj4g0013705' => 'lja', 'Lj4g0027865' => 'lja', 'Lj5C92G16' => 'lonja', 'Lj5C92T12' => 'lonja', 'Lj7C596T3' => 'lonja', 'Lj9A446G59' => 'lonja', 'Lj9A482G21' => 'lonja', 'Lsat_1_v5_gn_1_28261' => 'lsa', 'Lsat_1_v5_gn_1_28281' => 'lsa', 'Lsat_1_v5_gn_1_32721' => 'lsa', 'Lsat_1_v5_gn_4_151760' => 'lsa', 'Lsat_1_v5_gn_4_2120' => 'lsa', 'Lsat_1_v5_gn_4_75761' => 'lsa', 'Lsat_1_v5_gn_5_10920' => 'lsa', 'Manes.02G099900' => 'mes', 'Manes.11G096200' => 'mes', 'Manes.12G007200' => 'mes', 'Manes.14G048300' => 'mes', 'Manes.17G114700' => 'mes', 'Mapoly0002s0070' => 'mpo', 'Mapoly0029s0099' => 'mpo', 'MBI07_g24742_MAGBIO' => 'mbi', 'MBI10_g27988_MAGBIO' => 'mbi', 'MBI11_g13057_MAGBIO' => 'mbi', 'MD02G1137200' => 'mdo', 'MD06G1137200' => 'mdo', 'MD07G1122300' => 'mdo', 'MD09G1078200' => 'mdo', 'MD13G1123700' => 'mdo', 'MD14G1151900' => 'mdo', 'MD17G1030900' => 'mdo', 'MD17G1068200' => 'mdo', 'MD17G1068600' => 'mdo', 'Medtr3g077540' => 'mtr', 'Medtr4g105530' => 'mtr', 'Medtr8g076580' => 'mtr', 'Medtr8g076590' => 'mtr', 'Medtr8g096410' => 'mtr', 'MELO3C016411.2' => 'cme', 'MELO3C017780.2' => 'cme', 'MELO3C022560.2' => 'cme', 'MELO3C026187.2' => 'cme', 'MELO3C026286.2' => 'cme', 'MELO3C032854.2' => 'cme', 'Migut.H02495' => 'egut', 'Migut.I00561' => 'egut', 'Migut.K01015' => 'egut', 'Migut.K01016' => 'egut', 'Migut.L00743' => 'egut', 'Migut.L00744' => 'egut', 'Migut.L00746' => 'egut', 'Migut.L00798' => 'egut', 'Migut.L00799' => 'egut', 'Migut.N02096' => 'egut', 'MSTRG.11259' => 'ama', 'MSTRG.23142' => 'ama', 'MSTRG.2499' => 'ama', 'Nitab4.5_0000003g0730' => 'nta', 'Nitab4.5_0000137g0020' => 'nta', 'Nitab4.5_0000721g0210' => 'nta', 'Nitab4.5_0000723g0050' => 'nta', 'Nitab4.5_0000913g0070' => 'nta', 'Nitab4.5_0001332g0040' => 'nta', 'Nitab4.5_0001771g0050' => 'nta', 'Nitab4.5_0001918g0050' => 'nta', 'Nitab4.5_0002686g0030' => 'nta', 'Nitab4.5_0003156g0020' => 'nta', 'Nitab4.5_0003383g0040' => 'nta', 'Nitab4.5_0003918g0010' => 'nta', 'Nitab4.5_0006760g0010' => 'nta', 'Nn1g05981' => 'nnu', 'Nn1g06288' => 'nnu', 'Nn3g16371' => 'nnu', 'Nn3g16786' => 'nnu', 'Nn4g22232' => 'nnu', 'Oeu005144.1' => 'oeu', 'Oeu005145.1' => 'oeu', 'Oeu011348.1' => 'oeu', 'Oeu016415.1' => 'oeu', 'Oeu023501.1' => 'oeu', 'Oeu044473.1' => 'oeu', 'Oeu048892.2' => 'oeu', 'Os01g0549200' => 'osa', 'Os02g0469300' => 'osa', 'Os04g0311100' => 'osa', 'Os06g0474900' => 'osa', 'Os10g0181700' => 'osa', 'Os11g0454800' => 'osa', 'Peaxi162Scf00037g00714' => 'pax', 'Peaxi162Scf00084g01217' => 'pax', 'Peaxi162Scf00257g00217' => 'pax', 'Peaxi162Scf00516g00215' => 'pax', 'Peaxi162Scf00689g00123' => 'pax', 'PGR044G2719' => 'pgr', 'PGR083G1360' => 'pgr', 'PGR102G2849' => 'pgr', 'PGR119G2534' => 'pgr', 'PGSC0003DMG400003538' => 'stu', 'PGSC0003DMG400028138' => 'stu', 'PGSC0003DMG400031732' => 'stu', 'PGSC0003DMG400038165' => 'stu', 'Phvul.002G284600' => 'pvu', 'Phvul.003G258200' => 'pvu', 'Phvul.009G176500' => 'pvu', 'Potri.003G167201' => 'ptr', 'Potri.005G118400' => 'ptr', 'Potri.012G089000' => 'ptr', 'Potri.012G102800' => 'ptr', 'Potri.015G079400' => 'ptr', 'Potri.015G100900' => 'ptr', 'Pp3c14_9810' => 'ppa', 'Pp3c15_10450' => 'ppa', 'Pp3c20_19150' => 'ppa', 'Pp3c23_12740' => 'ppa', 'Pp3c23_6310' => 'ppa', 'Pp3c24_3720' => 'ppa', 'Pp3c27_2580' => 'ppa', 'Pp3c9_8990' => 'ppa', 'PRCOL_00002854' => 'pco', 'Prupe.1G221200' => 'ppe', 'Prupe.3G289000' => 'ppe', 'Prupe.5G147000' => 'ppe', 'Prupe.6G157300' => 'ppe', 'Prupe.7G163400' => 'ppe', 'Psat0s2177g0040' => 'psa', 'Psat3g174760' => 'psa', 'Psat3g192160' => 'psa', 'Psat4g058520' => 'psa', 'Psat4g096840' => 'psa', 'Psat7g037320' => 'psa', 'PSO017G1274' => 'pso', 'PSO017G5166' => 'pso', 'PSO063G4558' => 'pso', 'PSO170G4458' => 'pso', 'PSO170G5005' => 'pso', 'PSO210G6156' => 'pso', 'PSO210G6635' => 'pso', 'PSO210G7397' => 'pso', 'PSO210G7700' => 'pso', 'PSO455G0035' => 'pso', 'PSO455G0180' => 'pso', 'PSO478G4515' => 'pso', 'PSO832G1305' => 'pso', 'PSO832G3489' => 'pso', 'QL02p075247' => 'qlo', 'QL03p051148' => 'qlo', 'QL05p010313' => 'qlo', 'QL06p034627' => 'qlo', 'QL10p001889' => 'qlo', 'QL10p010846' => 'qlo', 'RcHm_v2.0_Chr1g0350621' => 'rch', 'RcHm_v2.0_Chr1g0350641' => 'rch', 'RcHm_v2.0_Chr2g0092891' => 'rch', 'RcHm_v2.0_Chr2g0100251' => 'rch', 'RcHm_v2.0_Chr2g0158661' => 'rch', 'RcHm_v2.0_Chr2g0172741' => 'rch', 'RcHm_v2.0_Chr4g0429571' => 'rch', 'RcHm_v2.0_Chr5g0042471' => 'rch', 'RcHm_v2.0_Chr7g0189451' => 'rch', 'Rhsim08G0052000' => 'rsi', 'Rhsim08G0174400' => 'rsi', 'Rhsim08G0193200' => 'rsi', 'Rhsim10G0214800' => 'rsi', 'Rhsim10G0214900' => 'rsi', 'Rhsim10G0215000' => 'rsi', 'Rhsim12G0022900' => 'rsi', 'Rhsim12G0177500' => 'rsi', 'Rhsim12G0177700' => 'rsi', 'Sabra03G0122600' => 'sbr', 'Sabra05G0097400' => 'sbr', 'Sabra12G0064100' => 'sbr', 'Sabra15G0121300' => 'sbr', 'SalBow2G0642' => 'sbo', 'SalBow5G2667' => 'sbo', 'SalBow5G4873' => 'sbo', 'SalBow8G2395' => 'sbo', 'Sc03g0003290' => 'sci', 'Sc10g0010130' => 'sci', 'Sc22g0003650' => 'sci', 'Sed0001603' => 'sed', 'Sed0004259' => 'sed', 'Sed0006789' => 'sed', 'Sed0011838' => 'sed', 'Sed0012964' => 'sed', 'Sed0016383' => 'sed', 'Sed0019010' => 'sed', 'Sed0020188' => 'sed', 'SEGI_04702' => 'sgi', 'SEGI_17231' => 'sgi', 'SEGI_18877' => 'sgi', 'SEGI_25196' => 'sgi', 'SEGI_25515' => 'sgi', 'SEGI_28445' => 'sgi', 'SEGI_37452' => 'sgi', 'SGA_v2.0_scaffold188G40336' => 'sas', 'SGA_v2.0_scaffold228G43247' => 'sas', 'SGA_v2.0_scaffold280G46853' => 'sas', 'SGA_v2.0_scaffold34G13808' => 'sas', 'SGA_v2.0_scaffold40G15576' => 'sas', 'SGA_v2.0_scaffold611G53188' => 'sas', 'SGA_v2.0_scaffold78G25461' => 'sas', 'SGA_v2.0_scaffold90G27888' => 'sas', 'SHI08601' => 'shi', 'SHI08606' => 'shi', 'SHI17117' => 'shi', 'SHI17119' => 'shi', 'SMO118G0201' => 'smo', 'SMO169G0247' => 'smo', 'SMO176G0006' => 'smo', 'SMO176G0015' => 'smo', 'SMO202G0006' => 'smo', 'SMO240G0050' => 'smo', 'SMO286G0009' => 'smo', 'SMO338G0033' => 'smo', 'SMO356G0533' => 'smo', 'SMO364G0382' => 'smo', 'SMO367G0166' => 'smo', 'SMO367G1098' => 'smo', 'Solyc01g009920.3' => 'sly', 'Solyc01g099300.3' => 'sly', 'Solyc02g084700.3' => 'sly', 'Solyc03g097520.3' => 'sly', 'Solyc06g071580.3' => 'sly', 'Solyc10g081760.3' => 'sly', 'Sopen01g005480' => 'spe', 'Sopen01g042850' => 'spe', 'Sopen02g029370' => 'spe', 'Sopen03g028280' => 'spe', 'Sopen06g027870' => 'spe', 'Sopen10g032270' => 'spe', 'Sp5g18180' => 'spa', 'Sp6g12880' => 'spa', 'Sp6g30850' => 'spa', 'Sp7g22960' => 'spa', 'Sp7g34010' => 'spa', 'SpUn1326_0010' => 'spa', 'TAR371G0242' => 'tar', 'TAR622G0638' => 'tar', 'TAR628G1548' => 'tar', 'TAR629G1079' => 'tar', 'TAR629G3413' => 'tar', 'THA.LOC104804249' => 'tha', 'THA.LOC104808315' => 'tha', 'THA.LOC104809238' => 'tha', 'THA.LOC104825484' => 'tha', 'Thecc.01G025500' => 'tca', 'Thecc.03G015800' => 'tca', 'Thecc.03G018000' => 'tca', 'Thecc.03G134800' => 'tca', 'Thecc.04G014700' => 'tca', 'Thhalv10006991m.g' => 'esa', 'Thhalv10012707m.g' => 'esa', 'Thhalv10015739m.g' => 'esa', 'Thhalv10024553m.g' => 'esa', 'Thhalv10024673m.g' => 'esa', 'Thhalv10029187m.g' => 'esa', 'TPR.G12971' => 'tpr', 'TPR.G29396' => 'tpr', 'TPR.G33376' => 'tpr', 'TPR.G35508' => 'tpr', 'TPR.G35516' => 'tpr', 'TPR.G37317' => 'tpr', 'TPR.G37389' => 'tpr', 'TPR.G37523' => 'tpr', 'TPR.G559' => 'tpr', 'TWI14G0070' => 'twi', 'TWI14G0729' => 'twi', 'TWI18G0596' => 'twi', 'TWI39G0780' => 'twi', 'TWI39G0850' => 'twi', 'TWI73G1052' => 'twi', 'unitig_52.g17485' => 'ugi', 'unitig_61.g26355' => 'ugi', 'vmacro01040' => 'vma', 'vmacro16731' => 'vma', 'vmacro18270' => 'vma', 'vmacro19142' => 'vma', 'vmacro19407' => 'vma', 'vmacro19408' => 'vma', 'vmacro21899' => 'vma', 'vmacro21900' => 'vma', 'vmacro21901' => 'vma', 'VMungo0251G0490' => 'vmu', 'VMungo0251G1748' => 'vmu', 'VMungo1309G0421' => 'vmu', 'Zm00001eb086500' => 'zma', 'Zm00001eb150680' => 'zma', 'Zm00001eb162330' => 'zma', 'Zm00001eb203130' => 'zma', 'Zm00001eb369480' => 'zma', 'Zm00001eb382340' => 'zma', 'Zm00001eb416360' => 'zma' ), 'gf_id' => 'HOM05D000902', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000902' ), 'data_identifier' => 'HOM05D000902', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000902', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '663', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02470' => 'bna', 'A01p16260' => 'bna', 'A02p01680' => 'bna', 'A03p16600' => 'bna', 'A03p55660' => 'bna', 'A03p64160' => 'bna', 'A03p64170' => 'bna', 'A08p31900' => 'bna', 'A09p59530' => 'bna', 'A10p08230' => 'bna', 'A10p25090' => 'bna', 'Aa31LG3G7100' => 'aar', 'Aa31LG3G7110' => 'aar', 'Aa31LG6G13160' => 'aar', 'Aa31LG7G10770' => 'aar', 'Aa31LG7G3830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2723' => 'aag', 'Actinidia08045' => 'ach', 'Actinidia08888' => 'ach', 'Actinidia18333' => 'ach', 'Actinidia19334' => 'ach', 'Actinidia25552' => 'ach', 'Actinidia26089' => 'ach', 'Actinidia30615' => 'ach', 'Actinidia30616' => 'ach', 'Actinidia33083' => 'ach', 'Actinidia35762' => 'ach', 'Ah.02g110620' => 'amhyb', 'Ah.11g046390' => 'amhyb', 'AL1G31670' => 'aly', 'AL6G23730' => 'aly', 'AL7G14740' => 'aly', 'AL7G14750' => 'aly', 'AL7G14760' => 'aly', 'AL7G28220' => 'aly', 'AL8G24940' => 'aly', 'Aqoxy3G01665' => 'aox', 'Aqoxy3G02853' => 'aox', 'Aqoxy5G01513' => 'aox', 'Aqoxy5G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8SKA4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ75LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKDA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0LJZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7REX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZP4YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWX7I5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2QKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS0L9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPCD8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q161UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC7XCF' => 'arhy', 'AT1G19100' => 'ath', 'AT4G24970' => 'ath', 'AT4G36270' => 'ath', 'AT4G36280' => 'ath', 'AT4G36290' => 'ath', 'AT5G13130' => 'ath', 'AT5G50780' => 'ath', 'ATR0582G266' => 'atr', 'ATR0661G195' => 'atr', 'ATR1152G031' => 'atr', 'Atru.chr11.2382' => 'acertr', 'Atru.chr12.2337' => 'acertr', 'Atru.chr3.744' => 'acertr', 'Atru.chr6.1870' => 'acertr', 'Atru.chr9.2515' => 'acertr', 'AUR62004120' => 'cqu', 'AUR62005667' => 'cqu', 'AUR62007634' => 'cqu', 'AUR62008186' => 'cqu', 'AUR62008187' => 'cqu', 'AUR62008188' => 'cqu', 'AUR62027954' => 'cqu', 'AUR62028766' => 'cqu', 'AUR62028767' => 'cqu', 'AUR62028768' => 'cqu', 'AUR62028886' => 'cqu', 'AUR62029563' => 'cqu', 'AUR62038832' => 'cqu', 'BcaB01g04149' => 'bca', 'BcaB03g12940' => 'bca', 'BcaB03g13090' => 'bca', 'BcaB03g14466' => 'bca', 'BcaB05g24035' => 'bca', 'BcaC01g06050' => 'bca', 'BcaC04g19148' => 'bca', 'BcaC04g20761' => 'bca', 'BcaC06g32845' => 'bca', 'BcaC07g41274' => 'bca', 'BcaC09g50827' => 'bca', 'BcaNung00741' => 'bca', 'BcaNung00742' => 'bca', 'BcaNung01859' => 'bca', 'BcaNung03985' => 'bca', 'BcaNung03989' => 'bca', 'BcaNung05661' => 'bca', 'BolC1t00257H' => 'bol', 'BolC1t01956H' => 'bol', 'BolC2t06534H' => 'bol', 'BolC3t14334H' => 'bol', 'BolC5t30451H' => 'bol', 'BolC7t45880H' => 'bol', 'BolC7t46586H' => 'bol', 'BolC8t49301H' => 'bol', 'BolC8t51837H' => 'bol', 'BolC9t56822H' => 'bol', 'BolC9t59235H' => 'bol', 'BraA01t00234Z' => 'bra', 'BraA01t01563Z' => 'bra', 'BraA02t05147Z' => 'bra', 'BraA03t10947Z' => 'bra', 'BraA03t14633Z' => 'bra', 'BraA08t35112Z' => 'bra', 'BraA09t41330Z' => 'bra', 'BraA10t44570Z' => 'bra', 'C01p02670' => 'bna', 'C01p20260' => 'bna', 'C02p05890' => 'bna', 'C03p19530' => 'bna', 'C05p17470' => 'bna', 'C07p53900' => 'bna', 'C07p61630' => 'bna', 'C08p16800' => 'bna', 'C08p42810' => 'bna', 'C09p39480' => 'bna', 'C09p63980' => 'bna', 'CAN.G1001.7' => 'can', 'CAN.G1034.55' => 'can', 'CAN.G143.7' => 'can', 'CAN.G3340.1' => 'can', 'CAN.G358.19' => 'can', 'CAN.G373.2' => 'can', 'CAN.G674.16' => 'can', 'CAN.G674.17' => 'can', 'CAN.G674.18' => 'can', 'CAN.G732.2' => 'can', 'CAN.G732.3' => 'can', 'CAN.G993.39' => 'can', 'CANSAT01G2052' => 'cansat', 'CANSAT80G0070' => 'cansat', 'CANSAT80G0483' => 'cansat', 'CANSAT80G0625' => 'cansat', 'CARHR019690' => 'chi', 'CARHR080280' => 'chi', 'CARHR152750' => 'chi', 'CARHR152760' => 'chi', 'CARHR152770' => 'chi', 'CARHR200340' => 'chi', 'CARHR232370' => 'chi', 'CARHR244670' => 'chi', 'CARHR244680' => 'chi', 'CARHR257520' => 'chi', 'Carub.0001s1872' => 'cru', 'Carub.0006s1130' => 'cru', 'Carub.0007s0396' => 'cru', 'Carub.0007s0397' => 'cru', 'Carub.0007s1608' => 'cru', 'Carub.0008s1068' => 'cru', 'Carub.0008s1077' => 'cru', 'Ca_16158_v3' => 'car', 'Ca_17571_v3' => 'car', 'Ca_21936_v3' => 'car', 'Ca_22350_v3' => 'car', 'CBR_g22445' => 'cbr', 'CBR_g26290' => 'cbr', 'Cc04_g09610' => 'ccan', 'Cc04_g12280' => 'ccan', 'Cc07_g10230' => 'ccan', 'CDE02G0093' => 'cde', 'CDE02G0701' => 'cde', 'CDE04G1050' => 'cde', 'CDE05G1833' => 'cde', 'CDE05G3058' => 'cde', 'CDE05G3380' => 'cde', 'CDE06G0536' => 'cde', 'Cfa006923' => 'cfa', 'Cfa009402' => 'cfa', 'Cfa018751' => 'cfa', 'Cfa019164' => 'cfa', 'Cfa022935' => 'cfa', 'Ciclev10019081m.g' => 'ccl', 'Ciclev10025076m.g' => 'ccl', 'Ciclev10030712m.g' => 'ccl', 'Ciclev10033760m.g' => 'ccl', 'CiPaw.05G105600' => 'cil', 'CiPaw.08G136700' => 'cil', 'CiPaw.11G003900' => 'cil', 'CiPaw.11G023700' => 'cil', 'CiPaw.12G003700' => 'cil', 'ClCG06G017100' => 'cla', 'ClCG06G018110' => 'cla', 'ClCG07G008800' => 'cla', 'ClCG07G015330' => 'cla', 'COL.COLO4_13698' => 'col', 'COL.COLO4_16659' => 'col', 'COL.COLO4_21986' => 'col', 'COL.COLO4_24049' => 'col', 'COL.COLO4_29061' => 'col', 'COL.COLO4_29075' => 'col', 'COL.COLO4_30094' => 'col', 'Cpa.g.c33689' => 'cpa', 'Cpa.g.sc108.39' => 'cpa', 'Cpa.g.sc108.41' => 'cpa', 'Cpa.g.sc1163.1' => 'cpa', 'Cpa.g.sc4.155' => 'cpa', 'Cpa.g.sc6.194' => 'cpa', 'CsaV3_1G000340' => 'csa', 'CsaV3_1G001400' => 'csa', 'CsaV3_4G002220' => 'csa', 'CsaV3_4G005370' => 'csa', 'CSS0007487' => 'camsi', 'CSS0008066' => 'camsi', 'CSS0009120' => 'camsi', 'CSS0015512' => 'camsi', 'CSS0022409' => 'camsi', 'CSS0025358' => 'camsi', 'CSS0044547' => 'camsi', 'DCAR_013057' => 'dca', 'DCAR_015058' => 'dca', 'DCAR_016027' => 'dca', 'DCAR_017327' => 'dca', 'DCAR_020743' => 'dca', 'DCAR_026157' => 'dca', 'DCAR_032339' => 'dca', 'DCAR_032340' => 'dca', 'Dinv11200' => 'din', 'Dinv11201' => 'din', 'Dinv20631' => 'din', 'Dinv23182' => 'din', 'Dinv33466' => 'din', 'Dinv33583' => 'din', 'Dinv38565' => 'din', 'Duzib068G0200' => 'dzi', 'Duzib147G0132' => 'dzi', 'Duzib147G0635' => 'dzi', 'Duzib205G1670' => 'dzi', 'Duzib251G0606' => 'dzi', 'ECA232G3336' => 'eca', 'ECA232G3763' => 'eca', 'ECA232G4845' => 'eca', 'ECA234G1607' => 'eca', 'ECA246G0932' => 'eca', 'ECA247G0781' => 'eca', 'ECA247G1932' => 'eca', 'ECA247G2079' => 'eca', 'ECA247G3338' => 'eca', 'ECA247G4115' => 'eca', 'EL10Ac3g06552' => 'bvu', 'EL10Ac5g10721' => 'bvu', 'EL10Ac5g10722' => 'bvu', 'EL10Ac5g10723' => 'bvu', 'EL10Ac5g11361' => 'bvu', 'EL10Ac6g13553' => 'bvu', 'EL10As8g23872' => 'bvu', 'Eucgr.B00250' => 'egr', 'Eucgr.B00251' => 'egr', 'Eucgr.B03533' => 'egr', 'Eucgr.I02381' => 'egr', 'Eucgr.K02700' => 'egr', 'FAN02G0174' => 'fan', 'FAN02G3146' => 'fan', 'FAN04G1672' => 'fan', 'FAN04G2273' => 'fan', 'FAN05G2791' => 'fan', 'FAN05G4035' => 'fan', 'FAN07G0834' => 'fan', 'FAN08G1198' => 'fan', 'FAN09G4182' => 'fan', 'FAN12G0496' => 'fan', 'FAN13G1027' => 'fan', 'FAN13G2951' => 'fan', 'FAN14G0705' => 'fan', 'FAN14G0720' => 'fan', 'FAN17G0201' => 'fan', 'FAN17G2665' => 'fan', 'FAN18G1456' => 'fan', 'FAN18G1525' => 'fan', 'FAN18G3500' => 'fan', 'FAN28G2670' => 'fan', 'FvH4_1g12391' => 'fve', 'FvH4_4g23220' => 'fve', 'FvH4_5g08810' => 'fve', 'FvH4_5g28960' => 'fve', 'FvH4_6g42820' => 'fve', 'FvH4_6g51110' => 'fve', 'Glyma.02G051802' => 'gma', 'Glyma.04G185300' => 'gma', 'Glyma.05G202900' => 'gma', 'Glyma.08G010300' => 'gma', 'Glyma.16G131900' => 'gma', 'Glyma.17G087900' => 'gma', 'Gohir.A07G048600' => 'ghi', 'Gohir.A11G179000' => 'ghi', 'Gohir.A12G140900' => 'ghi', 'Gohir.A12G140950' => 'ghi', 'Gohir.A12G191700' => 'ghi', 'Gohir.A13G086300' => 'ghi', 'Gohir.D07G052900' => 'ghi', 'Gohir.D11G186600' => 'ghi', 'Gohir.D12G145575' => 'ghi', 'Gohir.D12G145650' => 'ghi', 'Gohir.D12G145725' => 'ghi', 'Gohir.D12G194050' => 'ghi', 'Gohir.D13G091800' => 'ghi', 'Gorai.001G055900' => 'gra', 'Gorai.007G198400' => 'gra', 'Gorai.008G157000' => 'gra', 'Gorai.008G157100' => 'gra', 'Gorai.008G208700' => 'gra', 'Gorai.010G138700' => 'gra', 'GSVIVG01000977001' => 'vvi', 'GSVIVG01007708001' => 'vvi', 'GSVIVG01008587001' => 'vvi', 'GSVIVG01018849001' => 'vvi', 'GSVIVG01032432001' => 'vvi', 'HanXRQChr02g0034131' => 'han', 'HanXRQChr02g0035981' => 'han', 'HanXRQChr02g0035991' => 'han', 'HanXRQChr05g0155611' => 'han', 'HanXRQChr05g0155621' => 'han', 'HanXRQChr08g0236501' => 'han', 'HanXRQChr09g0261321' => 'han', 'HanXRQChr09g0272081' => 'han', 'HanXRQChr10g0310741' => 'han', 'HanXRQChr11g0325591' => 'han', 'HanXRQChr12g0385691' => 'han', 'HanXRQChr13g0387801' => 'han', 'HanXRQChr15g0463011' => 'han', 'Haze_03826' => 'cav', 'Haze_03827' => 'cav', 'Haze_07183' => 'cav', 'Haze_07537' => 'cav', 'Haze_07539' => 'cav', 'Haze_12461' => 'cav', 'Haze_16115' => 'cav', 'Haze_16808' => 'cav', 'Haze_18531' => 'cav', 'Hma1.2p1_0046F.1_g026700' => 'hma', 'Hma1.2p1_0046F.1_g026710' => 'hma', 'Hma1.2p1_0168F.1_g074340' => 'hma', 'Hma1.2p1_0266F.1_g107030' => 'hma', 'Hma1.2p1_0266F.1_g107060' => 'hma', 'Hma1.2p1_0275F.1_g110510' => 'hma', 'Hma1.2p1_0592F.1_g185490' => 'hma', 'Hma1.2p1_0592F.1_g185500' => 'hma', 'Hma1.2p1_0592F.1_g185510' => 'hma', 'Hma1.2p1_0592F.1_g185520' => 'hma', 'Hma1.2p1_0592F.1_g185530' => 'hma', 'Hma1.2p1_0818F.1_g223450' => 'hma', 'HPP92_009708' => 'vpl', 'HPP92_009793' => 'vpl', 'HPP92_009796' => 'vpl', 'HPP92_009797' => 'vpl', 'HPP92_014940' => 'vpl', 'HPP92_014988' => 'vpl', 'Hund02463' => 'sun', 'Hund02760' => 'sun', 'Hund05071' => 'sun', 'Hund10108' => 'sun', 'Hund11204' => 'sun', 'Hund14016' => 'sun', 'Hund16464' => 'sun', 'Lalb_Chr09g0333391' => 'lal', 'Lalb_Chr11g0070461' => 'lal', 'Lalb_Chr12g0201671' => 'lal', 'Lalb_Chr13g0297161' => 'lal', 'Lj1g0002823' => 'lja', 'Lj3C1074T6' => 'lonja', 'Lj4A212T28' => 'lonja', 'Lj4g0005516' => 'lja', 'Lj4g0013705' => 'lja', 'Lj4g0027865' => 'lja', 'Lj5C92G16' => 'lonja', 'Lj5C92T12' => 'lonja', 'Lj7C596T3' => 'lonja', 'Lj9A446G59' => 'lonja', 'Lj9A482G21' => 'lonja', 'Lsat_1_v5_gn_1_28261' => 'lsa', 'Lsat_1_v5_gn_1_28281' => 'lsa', 'Lsat_1_v5_gn_1_32721' => 'lsa', 'Lsat_1_v5_gn_4_151760' => 'lsa', 'Lsat_1_v5_gn_4_2120' => 'lsa', 'Lsat_1_v5_gn_4_75761' => 'lsa', 'Lsat_1_v5_gn_5_10920' => 'lsa', 'Manes.02G099900' => 'mes', 'Manes.11G096200' => 'mes', 'Manes.12G007200' => 'mes', 'Manes.14G048300' => 'mes', 'Manes.17G114700' => 'mes', 'Mapoly0002s0070' => 'mpo', 'Mapoly0029s0099' => 'mpo', 'MBI07_g24742_MAGBIO' => 'mbi', 'MBI10_g27988_MAGBIO' => 'mbi', 'MBI11_g13057_MAGBIO' => 'mbi', 'MD02G1137200' => 'mdo', 'MD06G1137200' => 'mdo', 'MD07G1122300' => 'mdo', 'MD09G1078200' => 'mdo', 'MD13G1123700' => 'mdo', 'MD14G1151900' => 'mdo', 'MD17G1030900' => 'mdo', 'MD17G1068200' => 'mdo', 'MD17G1068600' => 'mdo', 'Medtr3g077540' => 'mtr', 'Medtr4g105530' => 'mtr', 'Medtr8g076580' => 'mtr', 'Medtr8g076590' => 'mtr', 'Medtr8g096410' => 'mtr', 'MELO3C016411.2' => 'cme', 'MELO3C017780.2' => 'cme', 'MELO3C022560.2' => 'cme', 'MELO3C026187.2' => 'cme', 'MELO3C026286.2' => 'cme', 'MELO3C032854.2' => 'cme', 'Migut.H02495' => 'egut', 'Migut.I00561' => 'egut', 'Migut.K01015' => 'egut', 'Migut.K01016' => 'egut', 'Migut.L00743' => 'egut', 'Migut.L00744' => 'egut', 'Migut.L00746' => 'egut', 'Migut.L00798' => 'egut', 'Migut.L00799' => 'egut', 'Migut.N02096' => 'egut', 'MSTRG.11259' => 'ama', 'MSTRG.23142' => 'ama', 'MSTRG.2499' => 'ama', 'Nitab4.5_0000003g0730' => 'nta', 'Nitab4.5_0000137g0020' => 'nta', 'Nitab4.5_0000721g0210' => 'nta', 'Nitab4.5_0000723g0050' => 'nta', 'Nitab4.5_0000913g0070' => 'nta', 'Nitab4.5_0001332g0040' => 'nta', 'Nitab4.5_0001771g0050' => 'nta', 'Nitab4.5_0001918g0050' => 'nta', 'Nitab4.5_0002686g0030' => 'nta', 'Nitab4.5_0003156g0020' => 'nta', 'Nitab4.5_0003383g0040' => 'nta', 'Nitab4.5_0003918g0010' => 'nta', 'Nitab4.5_0006760g0010' => 'nta', 'Nn1g05981' => 'nnu', 'Nn1g06288' => 'nnu', 'Nn3g16371' => 'nnu', 'Nn3g16786' => 'nnu', 'Nn4g22232' => 'nnu', 'Oeu005144.1' => 'oeu', 'Oeu005145.1' => 'oeu', 'Oeu011348.1' => 'oeu', 'Oeu016415.1' => 'oeu', 'Oeu023501.1' => 'oeu', 'Oeu044473.1' => 'oeu', 'Oeu048892.2' => 'oeu', 'Os01g0549200' => 'osa', 'Os02g0469300' => 'osa', 'Os04g0311100' => 'osa', 'Os06g0474900' => 'osa', 'Os10g0181700' => 'osa', 'Os11g0454800' => 'osa', 'Peaxi162Scf00037g00714' => 'pax', 'Peaxi162Scf00084g01217' => 'pax', 'Peaxi162Scf00257g00217' => 'pax', 'Peaxi162Scf00516g00215' => 'pax', 'Peaxi162Scf00689g00123' => 'pax', 'PGR044G2719' => 'pgr', 'PGR083G1360' => 'pgr', 'PGR102G2849' => 'pgr', 'PGR119G2534' => 'pgr', 'PGSC0003DMG400003538' => 'stu', 'PGSC0003DMG400028138' => 'stu', 'PGSC0003DMG400031732' => 'stu', 'PGSC0003DMG400038165' => 'stu', 'Phvul.002G284600' => 'pvu', 'Phvul.003G258200' => 'pvu', 'Phvul.009G176500' => 'pvu', 'Potri.003G167201' => 'ptr', 'Potri.005G118400' => 'ptr', 'Potri.012G089000' => 'ptr', 'Potri.012G102800' => 'ptr', 'Potri.015G079400' => 'ptr', 'Potri.015G100900' => 'ptr', 'Pp3c14_9810' => 'ppa', 'Pp3c15_10450' => 'ppa', 'Pp3c20_19150' => 'ppa', 'Pp3c23_12740' => 'ppa', 'Pp3c23_6310' => 'ppa', 'Pp3c24_3720' => 'ppa', 'Pp3c27_2580' => 'ppa', 'Pp3c9_8990' => 'ppa', 'PRCOL_00002854' => 'pco', 'Prupe.1G221200' => 'ppe', 'Prupe.3G289000' => 'ppe', 'Prupe.5G147000' => 'ppe', 'Prupe.6G157300' => 'ppe', 'Prupe.7G163400' => 'ppe', 'Psat0s2177g0040' => 'psa', 'Psat3g174760' => 'psa', 'Psat3g192160' => 'psa', 'Psat4g058520' => 'psa', 'Psat4g096840' => 'psa', 'Psat7g037320' => 'psa', 'PSO017G1274' => 'pso', 'PSO017G5166' => 'pso', 'PSO063G4558' => 'pso', 'PSO170G4458' => 'pso', 'PSO170G5005' => 'pso', 'PSO210G6156' => 'pso', 'PSO210G6635' => 'pso', 'PSO210G7397' => 'pso', 'PSO210G7700' => 'pso', 'PSO455G0035' => 'pso', 'PSO455G0180' => 'pso', 'PSO478G4515' => 'pso', 'PSO832G1305' => 'pso', 'PSO832G3489' => 'pso', 'QL02p075247' => 'qlo', 'QL03p051148' => 'qlo', 'QL05p010313' => 'qlo', 'QL06p034627' => 'qlo', 'QL10p001889' => 'qlo', 'QL10p010846' => 'qlo', 'RcHm_v2.0_Chr1g0350621' => 'rch', 'RcHm_v2.0_Chr1g0350641' => 'rch', 'RcHm_v2.0_Chr2g0092891' => 'rch', 'RcHm_v2.0_Chr2g0100251' => 'rch', 'RcHm_v2.0_Chr2g0158661' => 'rch', 'RcHm_v2.0_Chr2g0172741' => 'rch', 'RcHm_v2.0_Chr4g0429571' => 'rch', 'RcHm_v2.0_Chr5g0042471' => 'rch', 'RcHm_v2.0_Chr7g0189451' => 'rch', 'Rhsim08G0052000' => 'rsi', 'Rhsim08G0174400' => 'rsi', 'Rhsim08G0193200' => 'rsi', 'Rhsim10G0214800' => 'rsi', 'Rhsim10G0214900' => 'rsi', 'Rhsim10G0215000' => 'rsi', 'Rhsim12G0022900' => 'rsi', 'Rhsim12G0177500' => 'rsi', 'Rhsim12G0177700' => 'rsi', 'Sabra03G0122600' => 'sbr', 'Sabra05G0097400' => 'sbr', 'Sabra12G0064100' => 'sbr', 'Sabra15G0121300' => 'sbr', 'SalBow2G0642' => 'sbo', 'SalBow5G2667' => 'sbo', 'SalBow5G4873' => 'sbo', 'SalBow8G2395' => 'sbo', 'Sc03g0003290' => 'sci', 'Sc10g0010130' => 'sci', 'Sc22g0003650' => 'sci', 'Sed0001603' => 'sed', 'Sed0004259' => 'sed', 'Sed0006789' => 'sed', 'Sed0011838' => 'sed', 'Sed0012964' => 'sed', 'Sed0016383' => 'sed', 'Sed0019010' => 'sed', 'Sed0020188' => 'sed', 'SEGI_04702' => 'sgi', 'SEGI_17231' => 'sgi', 'SEGI_18877' => 'sgi', 'SEGI_25196' => 'sgi', 'SEGI_25515' => 'sgi', 'SEGI_28445' => 'sgi', 'SEGI_37452' => 'sgi', 'SGA_v2.0_scaffold188G40336' => 'sas', 'SGA_v2.0_scaffold228G43247' => 'sas', 'SGA_v2.0_scaffold280G46853' => 'sas', 'SGA_v2.0_scaffold34G13808' => 'sas', 'SGA_v2.0_scaffold40G15576' => 'sas', 'SGA_v2.0_scaffold611G53188' => 'sas', 'SGA_v2.0_scaffold78G25461' => 'sas', 'SGA_v2.0_scaffold90G27888' => 'sas', 'SHI08601' => 'shi', 'SHI08606' => 'shi', 'SHI17117' => 'shi', 'SHI17119' => 'shi', 'SMO118G0201' => 'smo', 'SMO169G0247' => 'smo', 'SMO176G0006' => 'smo', 'SMO176G0015' => 'smo', 'SMO202G0006' => 'smo', 'SMO240G0050' => 'smo', 'SMO286G0009' => 'smo', 'SMO338G0033' => 'smo', 'SMO356G0533' => 'smo', 'SMO364G0382' => 'smo', 'SMO367G0166' => 'smo', 'SMO367G1098' => 'smo', 'Solyc01g009920.3' => 'sly', 'Solyc01g099300.3' => 'sly', 'Solyc02g084700.3' => 'sly', 'Solyc03g097520.3' => 'sly', 'Solyc06g071580.3' => 'sly', 'Solyc10g081760.3' => 'sly', 'Sopen01g005480' => 'spe', 'Sopen01g042850' => 'spe', 'Sopen02g029370' => 'spe', 'Sopen03g028280' => 'spe', 'Sopen06g027870' => 'spe', 'Sopen10g032270' => 'spe', 'Sp5g18180' => 'spa', 'Sp6g12880' => 'spa', 'Sp6g30850' => 'spa', 'Sp7g22960' => 'spa', 'Sp7g34010' => 'spa', 'SpUn1326_0010' => 'spa', 'TAR371G0242' => 'tar', 'TAR622G0638' => 'tar', 'TAR628G1548' => 'tar', 'TAR629G1079' => 'tar', 'TAR629G3413' => 'tar', 'THA.LOC104804249' => 'tha', 'THA.LOC104808315' => 'tha', 'THA.LOC104809238' => 'tha', 'THA.LOC104825484' => 'tha', 'Thecc.01G025500' => 'tca', 'Thecc.03G015800' => 'tca', 'Thecc.03G018000' => 'tca', 'Thecc.03G134800' => 'tca', 'Thecc.04G014700' => 'tca', 'Thhalv10006991m.g' => 'esa', 'Thhalv10012707m.g' => 'esa', 'Thhalv10015739m.g' => 'esa', 'Thhalv10024553m.g' => 'esa', 'Thhalv10024673m.g' => 'esa', 'Thhalv10029187m.g' => 'esa', 'TPR.G12971' => 'tpr', 'TPR.G29396' => 'tpr', 'TPR.G33376' => 'tpr', 'TPR.G35508' => 'tpr', 'TPR.G35516' => 'tpr', 'TPR.G37317' => 'tpr', 'TPR.G37389' => 'tpr', 'TPR.G37523' => 'tpr', 'TPR.G559' => 'tpr', 'TWI14G0070' => 'twi', 'TWI14G0729' => 'twi', 'TWI18G0596' => 'twi', 'TWI39G0780' => 'twi', 'TWI39G0850' => 'twi', 'TWI73G1052' => 'twi', 'unitig_52.g17485' => 'ugi', 'unitig_61.g26355' => 'ugi', 'vmacro01040' => 'vma', 'vmacro16731' => 'vma', 'vmacro18270' => 'vma', 'vmacro19142' => 'vma', 'vmacro19407' => 'vma', 'vmacro19408' => 'vma', 'vmacro21899' => 'vma', 'vmacro21900' => 'vma', 'vmacro21901' => 'vma', 'VMungo0251G0490' => 'vmu', 'VMungo0251G1748' => 'vmu', 'VMungo1309G0421' => 'vmu', 'Zm00001eb086500' => 'zma', 'Zm00001eb150680' => 'zma', 'Zm00001eb162330' => 'zma', 'Zm00001eb203130' => 'zma', 'Zm00001eb369480' => 'zma', 'Zm00001eb382340' => 'zma', 'Zm00001eb416360' => 'zma' ) $gf_id = 'HOM05D000902' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000902' ) $data_identifier = 'HOM05D000902' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 13, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 10, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 6, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 9, 'hma' => (int) 12, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 4, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 6, 'ppa' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 6, 'rch' => (int) 9, 'rsi' => (int) 9, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 12, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 3, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416360' $species_info = array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ) $local_species = 'pco' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000902', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '663', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02470' => 'bna', 'A01p16260' => 'bna', 'A02p01680' => 'bna', 'A03p16600' => 'bna', 'A03p55660' => 'bna', 'A03p64160' => 'bna', 'A03p64170' => 'bna', 'A08p31900' => 'bna', 'A09p59530' => 'bna', 'A10p08230' => 'bna', 'A10p25090' => 'bna', 'Aa31LG3G7100' => 'aar', 'Aa31LG3G7110' => 'aar', 'Aa31LG6G13160' => 'aar', 'Aa31LG7G10770' => 'aar', 'Aa31LG7G3830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2723' => 'aag', 'Actinidia08045' => 'ach', 'Actinidia08888' => 'ach', 'Actinidia18333' => 'ach', 'Actinidia19334' => 'ach', 'Actinidia25552' => 'ach', 'Actinidia26089' => 'ach', 'Actinidia30615' => 'ach', 'Actinidia30616' => 'ach', 'Actinidia33083' => 'ach', 'Actinidia35762' => 'ach', 'Ah.02g110620' => 'amhyb', 'Ah.11g046390' => 'amhyb', 'AL1G31670' => 'aly', 'AL6G23730' => 'aly', 'AL7G14740' => 'aly', 'AL7G14750' => 'aly', 'AL7G14760' => 'aly', 'AL7G28220' => 'aly', 'AL8G24940' => 'aly', 'Aqoxy3G01665' => 'aox', 'Aqoxy3G02853' => 'aox', 'Aqoxy5G01513' => 'aox', 'Aqoxy5G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8SKA4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ75LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKDA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0LJZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7REX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZP4YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWX7I5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2QKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS0L9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPCD8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q161UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC7XCF' => 'arhy', 'AT1G19100' => 'ath', 'AT4G24970' => 'ath', 'AT4G36270' => 'ath', 'AT4G36280' => 'ath', 'AT4G36290' => 'ath', 'AT5G13130' => 'ath', 'AT5G50780' => 'ath', 'ATR0582G266' => 'atr', 'ATR0661G195' => 'atr', 'ATR1152G031' => 'atr', 'Atru.chr11.2382' => 'acertr', 'Atru.chr12.2337' => 'acertr', 'Atru.chr3.744' => 'acertr', 'Atru.chr6.1870' => 'acertr', 'Atru.chr9.2515' => 'acertr', 'AUR62004120' => 'cqu', 'AUR62005667' => 'cqu', 'AUR62007634' => 'cqu', 'AUR62008186' => 'cqu', 'AUR62008187' => 'cqu', 'AUR62008188' => 'cqu', 'AUR62027954' => 'cqu', 'AUR62028766' => 'cqu', 'AUR62028767' => 'cqu', 'AUR62028768' => 'cqu', 'AUR62028886' => 'cqu', 'AUR62029563' => 'cqu', 'AUR62038832' => 'cqu', 'BcaB01g04149' => 'bca', 'BcaB03g12940' => 'bca', 'BcaB03g13090' => 'bca', 'BcaB03g14466' => 'bca', 'BcaB05g24035' => 'bca', 'BcaC01g06050' => 'bca', 'BcaC04g19148' => 'bca', 'BcaC04g20761' => 'bca', 'BcaC06g32845' => 'bca', 'BcaC07g41274' => 'bca', 'BcaC09g50827' => 'bca', 'BcaNung00741' => 'bca', 'BcaNung00742' => 'bca', 'BcaNung01859' => 'bca', 'BcaNung03985' => 'bca', 'BcaNung03989' => 'bca', 'BcaNung05661' => 'bca', 'BolC1t00257H' => 'bol', 'BolC1t01956H' => 'bol', 'BolC2t06534H' => 'bol', 'BolC3t14334H' => 'bol', 'BolC5t30451H' => 'bol', 'BolC7t45880H' => 'bol', 'BolC7t46586H' => 'bol', 'BolC8t49301H' => 'bol', 'BolC8t51837H' => 'bol', 'BolC9t56822H' => 'bol', 'BolC9t59235H' => 'bol', 'BraA01t00234Z' => 'bra', 'BraA01t01563Z' => 'bra', 'BraA02t05147Z' => 'bra', 'BraA03t10947Z' => 'bra', 'BraA03t14633Z' => 'bra', 'BraA08t35112Z' => 'bra', 'BraA09t41330Z' => 'bra', 'BraA10t44570Z' => 'bra', 'C01p02670' => 'bna', 'C01p20260' => 'bna', 'C02p05890' => 'bna', 'C03p19530' => 'bna', 'C05p17470' => 'bna', 'C07p53900' => 'bna', 'C07p61630' => 'bna', 'C08p16800' => 'bna', 'C08p42810' => 'bna', 'C09p39480' => 'bna', 'C09p63980' => 'bna', 'CAN.G1001.7' => 'can', 'CAN.G1034.55' => 'can', 'CAN.G143.7' => 'can', 'CAN.G3340.1' => 'can', 'CAN.G358.19' => 'can', 'CAN.G373.2' => 'can', 'CAN.G674.16' => 'can', 'CAN.G674.17' => 'can', 'CAN.G674.18' => 'can', 'CAN.G732.2' => 'can', 'CAN.G732.3' => 'can', 'CAN.G993.39' => 'can', 'CANSAT01G2052' => 'cansat', 'CANSAT80G0070' => 'cansat', 'CANSAT80G0483' => 'cansat', 'CANSAT80G0625' => 'cansat', 'CARHR019690' => 'chi', 'CARHR080280' => 'chi', 'CARHR152750' => 'chi', 'CARHR152760' => 'chi', 'CARHR152770' => 'chi', 'CARHR200340' => 'chi', 'CARHR232370' => 'chi', 'CARHR244670' => 'chi', 'CARHR244680' => 'chi', 'CARHR257520' => 'chi', 'Carub.0001s1872' => 'cru', 'Carub.0006s1130' => 'cru', 'Carub.0007s0396' => 'cru', 'Carub.0007s0397' => 'cru', 'Carub.0007s1608' => 'cru', 'Carub.0008s1068' => 'cru', 'Carub.0008s1077' => 'cru', 'Ca_16158_v3' => 'car', 'Ca_17571_v3' => 'car', 'Ca_21936_v3' => 'car', 'Ca_22350_v3' => 'car', 'CBR_g22445' => 'cbr', 'CBR_g26290' => 'cbr', 'Cc04_g09610' => 'ccan', 'Cc04_g12280' => 'ccan', 'Cc07_g10230' => 'ccan', 'CDE02G0093' => 'cde', 'CDE02G0701' => 'cde', 'CDE04G1050' => 'cde', 'CDE05G1833' => 'cde', 'CDE05G3058' => 'cde', 'CDE05G3380' => 'cde', 'CDE06G0536' => 'cde', 'Cfa006923' => 'cfa', 'Cfa009402' => 'cfa', 'Cfa018751' => 'cfa', 'Cfa019164' => 'cfa', 'Cfa022935' => 'cfa', 'Ciclev10019081m.g' => 'ccl', 'Ciclev10025076m.g' => 'ccl', 'Ciclev10030712m.g' => 'ccl', 'Ciclev10033760m.g' => 'ccl', 'CiPaw.05G105600' => 'cil', 'CiPaw.08G136700' => 'cil', 'CiPaw.11G003900' => 'cil', 'CiPaw.11G023700' => 'cil', 'CiPaw.12G003700' => 'cil', 'ClCG06G017100' => 'cla', 'ClCG06G018110' => 'cla', 'ClCG07G008800' => 'cla', 'ClCG07G015330' => 'cla', 'COL.COLO4_13698' => 'col', 'COL.COLO4_16659' => 'col', 'COL.COLO4_21986' => 'col', 'COL.COLO4_24049' => 'col', 'COL.COLO4_29061' => 'col', 'COL.COLO4_29075' => 'col', 'COL.COLO4_30094' => 'col', 'Cpa.g.c33689' => 'cpa', 'Cpa.g.sc108.39' => 'cpa', 'Cpa.g.sc108.41' => 'cpa', 'Cpa.g.sc1163.1' => 'cpa', 'Cpa.g.sc4.155' => 'cpa', 'Cpa.g.sc6.194' => 'cpa', 'CsaV3_1G000340' => 'csa', 'CsaV3_1G001400' => 'csa', 'CsaV3_4G002220' => 'csa', 'CsaV3_4G005370' => 'csa', 'CSS0007487' => 'camsi', 'CSS0008066' => 'camsi', 'CSS0009120' => 'camsi', 'CSS0015512' => 'camsi', 'CSS0022409' => 'camsi', 'CSS0025358' => 'camsi', 'CSS0044547' => 'camsi', 'DCAR_013057' => 'dca', 'DCAR_015058' => 'dca', 'DCAR_016027' => 'dca', 'DCAR_017327' => 'dca', 'DCAR_020743' => 'dca', 'DCAR_026157' => 'dca', 'DCAR_032339' => 'dca', 'DCAR_032340' => 'dca', 'Dinv11200' => 'din', 'Dinv11201' => 'din', 'Dinv20631' => 'din', 'Dinv23182' => 'din', 'Dinv33466' => 'din', 'Dinv33583' => 'din', 'Dinv38565' => 'din', 'Duzib068G0200' => 'dzi', 'Duzib147G0132' => 'dzi', 'Duzib147G0635' => 'dzi', 'Duzib205G1670' => 'dzi', 'Duzib251G0606' => 'dzi', 'ECA232G3336' => 'eca', 'ECA232G3763' => 'eca', 'ECA232G4845' => 'eca', 'ECA234G1607' => 'eca', 'ECA246G0932' => 'eca', 'ECA247G0781' => 'eca', 'ECA247G1932' => 'eca', 'ECA247G2079' => 'eca', 'ECA247G3338' => 'eca', 'ECA247G4115' => 'eca', 'EL10Ac3g06552' => 'bvu', 'EL10Ac5g10721' => 'bvu', 'EL10Ac5g10722' => 'bvu', 'EL10Ac5g10723' => 'bvu', 'EL10Ac5g11361' => 'bvu', 'EL10Ac6g13553' => 'bvu', 'EL10As8g23872' => 'bvu', 'Eucgr.B00250' => 'egr', 'Eucgr.B00251' => 'egr', 'Eucgr.B03533' => 'egr', 'Eucgr.I02381' => 'egr', 'Eucgr.K02700' => 'egr', 'FAN02G0174' => 'fan', 'FAN02G3146' => 'fan', 'FAN04G1672' => 'fan', 'FAN04G2273' => 'fan', 'FAN05G2791' => 'fan', 'FAN05G4035' => 'fan', 'FAN07G0834' => 'fan', 'FAN08G1198' => 'fan', 'FAN09G4182' => 'fan', 'FAN12G0496' => 'fan', 'FAN13G1027' => 'fan', 'FAN13G2951' => 'fan', 'FAN14G0705' => 'fan', 'FAN14G0720' => 'fan', 'FAN17G0201' => 'fan', 'FAN17G2665' => 'fan', 'FAN18G1456' => 'fan', 'FAN18G1525' => 'fan', 'FAN18G3500' => 'fan', 'FAN28G2670' => 'fan', 'FvH4_1g12391' => 'fve', 'FvH4_4g23220' => 'fve', 'FvH4_5g08810' => 'fve', 'FvH4_5g28960' => 'fve', 'FvH4_6g42820' => 'fve', 'FvH4_6g51110' => 'fve', 'Glyma.02G051802' => 'gma', 'Glyma.04G185300' => 'gma', 'Glyma.05G202900' => 'gma', 'Glyma.08G010300' => 'gma', 'Glyma.16G131900' => 'gma', 'Glyma.17G087900' => 'gma', 'Gohir.A07G048600' => 'ghi', 'Gohir.A11G179000' => 'ghi', 'Gohir.A12G140900' => 'ghi', 'Gohir.A12G140950' => 'ghi', 'Gohir.A12G191700' => 'ghi', 'Gohir.A13G086300' => 'ghi', 'Gohir.D07G052900' => 'ghi', 'Gohir.D11G186600' => 'ghi', 'Gohir.D12G145575' => 'ghi', 'Gohir.D12G145650' => 'ghi', 'Gohir.D12G145725' => 'ghi', 'Gohir.D12G194050' => 'ghi', 'Gohir.D13G091800' => 'ghi', 'Gorai.001G055900' => 'gra', 'Gorai.007G198400' => 'gra', 'Gorai.008G157000' => 'gra', 'Gorai.008G157100' => 'gra', 'Gorai.008G208700' => 'gra', 'Gorai.010G138700' => 'gra', 'GSVIVG01000977001' => 'vvi', 'GSVIVG01007708001' => 'vvi', 'GSVIVG01008587001' => 'vvi', 'GSVIVG01018849001' => 'vvi', 'GSVIVG01032432001' => 'vvi', 'HanXRQChr02g0034131' => 'han', 'HanXRQChr02g0035981' => 'han', 'HanXRQChr02g0035991' => 'han', 'HanXRQChr05g0155611' => 'han', 'HanXRQChr05g0155621' => 'han', 'HanXRQChr08g0236501' => 'han', 'HanXRQChr09g0261321' => 'han', 'HanXRQChr09g0272081' => 'han', 'HanXRQChr10g0310741' => 'han', 'HanXRQChr11g0325591' => 'han', 'HanXRQChr12g0385691' => 'han', 'HanXRQChr13g0387801' => 'han', 'HanXRQChr15g0463011' => 'han', 'Haze_03826' => 'cav', 'Haze_03827' => 'cav', 'Haze_07183' => 'cav', 'Haze_07537' => 'cav', 'Haze_07539' => 'cav', 'Haze_12461' => 'cav', 'Haze_16115' => 'cav', 'Haze_16808' => 'cav', 'Haze_18531' => 'cav', 'Hma1.2p1_0046F.1_g026700' => 'hma', 'Hma1.2p1_0046F.1_g026710' => 'hma', 'Hma1.2p1_0168F.1_g074340' => 'hma', 'Hma1.2p1_0266F.1_g107030' => 'hma', 'Hma1.2p1_0266F.1_g107060' => 'hma', 'Hma1.2p1_0275F.1_g110510' => 'hma', 'Hma1.2p1_0592F.1_g185490' => 'hma', 'Hma1.2p1_0592F.1_g185500' => 'hma', 'Hma1.2p1_0592F.1_g185510' => 'hma', 'Hma1.2p1_0592F.1_g185520' => 'hma', 'Hma1.2p1_0592F.1_g185530' => 'hma', 'Hma1.2p1_0818F.1_g223450' => 'hma', 'HPP92_009708' => 'vpl', 'HPP92_009793' => 'vpl', 'HPP92_009796' => 'vpl', 'HPP92_009797' => 'vpl', 'HPP92_014940' => 'vpl', 'HPP92_014988' => 'vpl', 'Hund02463' => 'sun', 'Hund02760' => 'sun', 'Hund05071' => 'sun', 'Hund10108' => 'sun', 'Hund11204' => 'sun', 'Hund14016' => 'sun', 'Hund16464' => 'sun', 'Lalb_Chr09g0333391' => 'lal', 'Lalb_Chr11g0070461' => 'lal', 'Lalb_Chr12g0201671' => 'lal', 'Lalb_Chr13g0297161' => 'lal', 'Lj1g0002823' => 'lja', 'Lj3C1074T6' => 'lonja', 'Lj4A212T28' => 'lonja', 'Lj4g0005516' => 'lja', 'Lj4g0013705' => 'lja', 'Lj4g0027865' => 'lja', 'Lj5C92G16' => 'lonja', 'Lj5C92T12' => 'lonja', 'Lj7C596T3' => 'lonja', 'Lj9A446G59' => 'lonja', 'Lj9A482G21' => 'lonja', 'Lsat_1_v5_gn_1_28261' => 'lsa', 'Lsat_1_v5_gn_1_28281' => 'lsa', 'Lsat_1_v5_gn_1_32721' => 'lsa', 'Lsat_1_v5_gn_4_151760' => 'lsa', 'Lsat_1_v5_gn_4_2120' => 'lsa', 'Lsat_1_v5_gn_4_75761' => 'lsa', 'Lsat_1_v5_gn_5_10920' => 'lsa', 'Manes.02G099900' => 'mes', 'Manes.11G096200' => 'mes', 'Manes.12G007200' => 'mes', 'Manes.14G048300' => 'mes', 'Manes.17G114700' => 'mes', 'Mapoly0002s0070' => 'mpo', 'Mapoly0029s0099' => 'mpo', 'MBI07_g24742_MAGBIO' => 'mbi', 'MBI10_g27988_MAGBIO' => 'mbi', 'MBI11_g13057_MAGBIO' => 'mbi', 'MD02G1137200' => 'mdo', 'MD06G1137200' => 'mdo', 'MD07G1122300' => 'mdo', 'MD09G1078200' => 'mdo', 'MD13G1123700' => 'mdo', 'MD14G1151900' => 'mdo', 'MD17G1030900' => 'mdo', 'MD17G1068200' => 'mdo', 'MD17G1068600' => 'mdo', 'Medtr3g077540' => 'mtr', 'Medtr4g105530' => 'mtr', 'Medtr8g076580' => 'mtr', 'Medtr8g076590' => 'mtr', 'Medtr8g096410' => 'mtr', 'MELO3C016411.2' => 'cme', 'MELO3C017780.2' => 'cme', 'MELO3C022560.2' => 'cme', 'MELO3C026187.2' => 'cme', 'MELO3C026286.2' => 'cme', 'MELO3C032854.2' => 'cme', 'Migut.H02495' => 'egut', 'Migut.I00561' => 'egut', 'Migut.K01015' => 'egut', 'Migut.K01016' => 'egut', 'Migut.L00743' => 'egut', 'Migut.L00744' => 'egut', 'Migut.L00746' => 'egut', 'Migut.L00798' => 'egut', 'Migut.L00799' => 'egut', 'Migut.N02096' => 'egut', 'MSTRG.11259' => 'ama', 'MSTRG.23142' => 'ama', 'MSTRG.2499' => 'ama', 'Nitab4.5_0000003g0730' => 'nta', 'Nitab4.5_0000137g0020' => 'nta', 'Nitab4.5_0000721g0210' => 'nta', 'Nitab4.5_0000723g0050' => 'nta', 'Nitab4.5_0000913g0070' => 'nta', 'Nitab4.5_0001332g0040' => 'nta', 'Nitab4.5_0001771g0050' => 'nta', 'Nitab4.5_0001918g0050' => 'nta', 'Nitab4.5_0002686g0030' => 'nta', 'Nitab4.5_0003156g0020' => 'nta', 'Nitab4.5_0003383g0040' => 'nta', 'Nitab4.5_0003918g0010' => 'nta', 'Nitab4.5_0006760g0010' => 'nta', 'Nn1g05981' => 'nnu', 'Nn1g06288' => 'nnu', 'Nn3g16371' => 'nnu', 'Nn3g16786' => 'nnu', 'Nn4g22232' => 'nnu', 'Oeu005144.1' => 'oeu', 'Oeu005145.1' => 'oeu', 'Oeu011348.1' => 'oeu', 'Oeu016415.1' => 'oeu', 'Oeu023501.1' => 'oeu', 'Oeu044473.1' => 'oeu', 'Oeu048892.2' => 'oeu', 'Os01g0549200' => 'osa', 'Os02g0469300' => 'osa', 'Os04g0311100' => 'osa', 'Os06g0474900' => 'osa', 'Os10g0181700' => 'osa', 'Os11g0454800' => 'osa', 'Peaxi162Scf00037g00714' => 'pax', 'Peaxi162Scf00084g01217' => 'pax', 'Peaxi162Scf00257g00217' => 'pax', 'Peaxi162Scf00516g00215' => 'pax', 'Peaxi162Scf00689g00123' => 'pax', 'PGR044G2719' => 'pgr', 'PGR083G1360' => 'pgr', 'PGR102G2849' => 'pgr', 'PGR119G2534' => 'pgr', 'PGSC0003DMG400003538' => 'stu', 'PGSC0003DMG400028138' => 'stu', 'PGSC0003DMG400031732' => 'stu', 'PGSC0003DMG400038165' => 'stu', 'Phvul.002G284600' => 'pvu', 'Phvul.003G258200' => 'pvu', 'Phvul.009G176500' => 'pvu', 'Potri.003G167201' => 'ptr', 'Potri.005G118400' => 'ptr', 'Potri.012G089000' => 'ptr', 'Potri.012G102800' => 'ptr', 'Potri.015G079400' => 'ptr', 'Potri.015G100900' => 'ptr', 'Pp3c14_9810' => 'ppa', 'Pp3c15_10450' => 'ppa', 'Pp3c20_19150' => 'ppa', 'Pp3c23_12740' => 'ppa', 'Pp3c23_6310' => 'ppa', 'Pp3c24_3720' => 'ppa', 'Pp3c27_2580' => 'ppa', 'Pp3c9_8990' => 'ppa', 'PRCOL_00002854' => 'pco', 'Prupe.1G221200' => 'ppe', 'Prupe.3G289000' => 'ppe', 'Prupe.5G147000' => 'ppe', 'Prupe.6G157300' => 'ppe', 'Prupe.7G163400' => 'ppe', 'Psat0s2177g0040' => 'psa', 'Psat3g174760' => 'psa', 'Psat3g192160' => 'psa', 'Psat4g058520' => 'psa', 'Psat4g096840' => 'psa', 'Psat7g037320' => 'psa', 'PSO017G1274' => 'pso', 'PSO017G5166' => 'pso', 'PSO063G4558' => 'pso', 'PSO170G4458' => 'pso', 'PSO170G5005' => 'pso', 'PSO210G6156' => 'pso', 'PSO210G6635' => 'pso', 'PSO210G7397' => 'pso', 'PSO210G7700' => 'pso', 'PSO455G0035' => 'pso', 'PSO455G0180' => 'pso', 'PSO478G4515' => 'pso', 'PSO832G1305' => 'pso', 'PSO832G3489' => 'pso', 'QL02p075247' => 'qlo', 'QL03p051148' => 'qlo', 'QL05p010313' => 'qlo', 'QL06p034627' => 'qlo', 'QL10p001889' => 'qlo', 'QL10p010846' => 'qlo', 'RcHm_v2.0_Chr1g0350621' => 'rch', 'RcHm_v2.0_Chr1g0350641' => 'rch', 'RcHm_v2.0_Chr2g0092891' => 'rch', 'RcHm_v2.0_Chr2g0100251' => 'rch', 'RcHm_v2.0_Chr2g0158661' => 'rch', 'RcHm_v2.0_Chr2g0172741' => 'rch', 'RcHm_v2.0_Chr4g0429571' => 'rch', 'RcHm_v2.0_Chr5g0042471' => 'rch', 'RcHm_v2.0_Chr7g0189451' => 'rch', 'Rhsim08G0052000' => 'rsi', 'Rhsim08G0174400' => 'rsi', 'Rhsim08G0193200' => 'rsi', 'Rhsim10G0214800' => 'rsi', 'Rhsim10G0214900' => 'rsi', 'Rhsim10G0215000' => 'rsi', 'Rhsim12G0022900' => 'rsi', 'Rhsim12G0177500' => 'rsi', 'Rhsim12G0177700' => 'rsi', 'Sabra03G0122600' => 'sbr', 'Sabra05G0097400' => 'sbr', 'Sabra12G0064100' => 'sbr', 'Sabra15G0121300' => 'sbr', 'SalBow2G0642' => 'sbo', 'SalBow5G2667' => 'sbo', 'SalBow5G4873' => 'sbo', 'SalBow8G2395' => 'sbo', 'Sc03g0003290' => 'sci', 'Sc10g0010130' => 'sci', 'Sc22g0003650' => 'sci', 'Sed0001603' => 'sed', 'Sed0004259' => 'sed', 'Sed0006789' => 'sed', 'Sed0011838' => 'sed', 'Sed0012964' => 'sed', 'Sed0016383' => 'sed', 'Sed0019010' => 'sed', 'Sed0020188' => 'sed', 'SEGI_04702' => 'sgi', 'SEGI_17231' => 'sgi', 'SEGI_18877' => 'sgi', 'SEGI_25196' => 'sgi', 'SEGI_25515' => 'sgi', 'SEGI_28445' => 'sgi', 'SEGI_37452' => 'sgi', 'SGA_v2.0_scaffold188G40336' => 'sas', 'SGA_v2.0_scaffold228G43247' => 'sas', 'SGA_v2.0_scaffold280G46853' => 'sas', 'SGA_v2.0_scaffold34G13808' => 'sas', 'SGA_v2.0_scaffold40G15576' => 'sas', 'SGA_v2.0_scaffold611G53188' => 'sas', 'SGA_v2.0_scaffold78G25461' => 'sas', 'SGA_v2.0_scaffold90G27888' => 'sas', 'SHI08601' => 'shi', 'SHI08606' => 'shi', 'SHI17117' => 'shi', 'SHI17119' => 'shi', 'SMO118G0201' => 'smo', 'SMO169G0247' => 'smo', 'SMO176G0006' => 'smo', 'SMO176G0015' => 'smo', 'SMO202G0006' => 'smo', 'SMO240G0050' => 'smo', 'SMO286G0009' => 'smo', 'SMO338G0033' => 'smo', 'SMO356G0533' => 'smo', 'SMO364G0382' => 'smo', 'SMO367G0166' => 'smo', 'SMO367G1098' => 'smo', 'Solyc01g009920.3' => 'sly', 'Solyc01g099300.3' => 'sly', 'Solyc02g084700.3' => 'sly', 'Solyc03g097520.3' => 'sly', 'Solyc06g071580.3' => 'sly', 'Solyc10g081760.3' => 'sly', 'Sopen01g005480' => 'spe', 'Sopen01g042850' => 'spe', 'Sopen02g029370' => 'spe', 'Sopen03g028280' => 'spe', 'Sopen06g027870' => 'spe', 'Sopen10g032270' => 'spe', 'Sp5g18180' => 'spa', 'Sp6g12880' => 'spa', 'Sp6g30850' => 'spa', 'Sp7g22960' => 'spa', 'Sp7g34010' => 'spa', 'SpUn1326_0010' => 'spa', 'TAR371G0242' => 'tar', 'TAR622G0638' => 'tar', 'TAR628G1548' => 'tar', 'TAR629G1079' => 'tar', 'TAR629G3413' => 'tar', 'THA.LOC104804249' => 'tha', 'THA.LOC104808315' => 'tha', 'THA.LOC104809238' => 'tha', 'THA.LOC104825484' => 'tha', 'Thecc.01G025500' => 'tca', 'Thecc.03G015800' => 'tca', 'Thecc.03G018000' => 'tca', 'Thecc.03G134800' => 'tca', 'Thecc.04G014700' => 'tca', 'Thhalv10006991m.g' => 'esa', 'Thhalv10012707m.g' => 'esa', 'Thhalv10015739m.g' => 'esa', 'Thhalv10024553m.g' => 'esa', 'Thhalv10024673m.g' => 'esa', 'Thhalv10029187m.g' => 'esa', 'TPR.G12971' => 'tpr', 'TPR.G29396' => 'tpr', 'TPR.G33376' => 'tpr', 'TPR.G35508' => 'tpr', 'TPR.G35516' => 'tpr', 'TPR.G37317' => 'tpr', 'TPR.G37389' => 'tpr', 'TPR.G37523' => 'tpr', 'TPR.G559' => 'tpr', 'TWI14G0070' => 'twi', 'TWI14G0729' => 'twi', 'TWI18G0596' => 'twi', 'TWI39G0780' => 'twi', 'TWI39G0850' => 'twi', 'TWI73G1052' => 'twi', 'unitig_52.g17485' => 'ugi', 'unitig_61.g26355' => 'ugi', 'vmacro01040' => 'vma', 'vmacro16731' => 'vma', 'vmacro18270' => 'vma', 'vmacro19142' => 'vma', 'vmacro19407' => 'vma', 'vmacro19408' => 'vma', 'vmacro21899' => 'vma', 'vmacro21900' => 'vma', 'vmacro21901' => 'vma', 'VMungo0251G0490' => 'vmu', 'VMungo0251G1748' => 'vmu', 'VMungo1309G0421' => 'vmu', 'Zm00001eb086500' => 'zma', 'Zm00001eb150680' => 'zma', 'Zm00001eb162330' => 'zma', 'Zm00001eb203130' => 'zma', 'Zm00001eb369480' => 'zma', 'Zm00001eb382340' => 'zma', 'Zm00001eb416360' => 'zma' ), 'gf_id' => 'HOM05D000902', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000902' ), 'data_identifier' => 'HOM05D000902', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000902', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '663', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02470' => 'bna', 'A01p16260' => 'bna', 'A02p01680' => 'bna', 'A03p16600' => 'bna', 'A03p55660' => 'bna', 'A03p64160' => 'bna', 'A03p64170' => 'bna', 'A08p31900' => 'bna', 'A09p59530' => 'bna', 'A10p08230' => 'bna', 'A10p25090' => 'bna', 'Aa31LG3G7100' => 'aar', 'Aa31LG3G7110' => 'aar', 'Aa31LG6G13160' => 'aar', 'Aa31LG7G10770' => 'aar', 'Aa31LG7G3830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2723' => 'aag', 'Actinidia08045' => 'ach', 'Actinidia08888' => 'ach', 'Actinidia18333' => 'ach', 'Actinidia19334' => 'ach', 'Actinidia25552' => 'ach', 'Actinidia26089' => 'ach', 'Actinidia30615' => 'ach', 'Actinidia30616' => 'ach', 'Actinidia33083' => 'ach', 'Actinidia35762' => 'ach', 'Ah.02g110620' => 'amhyb', 'Ah.11g046390' => 'amhyb', 'AL1G31670' => 'aly', 'AL6G23730' => 'aly', 'AL7G14740' => 'aly', 'AL7G14750' => 'aly', 'AL7G14760' => 'aly', 'AL7G28220' => 'aly', 'AL8G24940' => 'aly', 'Aqoxy3G01665' => 'aox', 'Aqoxy3G02853' => 'aox', 'Aqoxy5G01513' => 'aox', 'Aqoxy5G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8SKA4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ75LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKDA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0LJZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7REX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZP4YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWX7I5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2QKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS0L9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPCD8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q161UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC7XCF' => 'arhy', 'AT1G19100' => 'ath', 'AT4G24970' => 'ath', 'AT4G36270' => 'ath', 'AT4G36280' => 'ath', 'AT4G36290' => 'ath', 'AT5G13130' => 'ath', 'AT5G50780' => 'ath', 'ATR0582G266' => 'atr', 'ATR0661G195' => 'atr', 'ATR1152G031' => 'atr', 'Atru.chr11.2382' => 'acertr', 'Atru.chr12.2337' => 'acertr', 'Atru.chr3.744' => 'acertr', 'Atru.chr6.1870' => 'acertr', 'Atru.chr9.2515' => 'acertr', 'AUR62004120' => 'cqu', 'AUR62005667' => 'cqu', 'AUR62007634' => 'cqu', 'AUR62008186' => 'cqu', 'AUR62008187' => 'cqu', 'AUR62008188' => 'cqu', 'AUR62027954' => 'cqu', 'AUR62028766' => 'cqu', 'AUR62028767' => 'cqu', 'AUR62028768' => 'cqu', 'AUR62028886' => 'cqu', 'AUR62029563' => 'cqu', 'AUR62038832' => 'cqu', 'BcaB01g04149' => 'bca', 'BcaB03g12940' => 'bca', 'BcaB03g13090' => 'bca', 'BcaB03g14466' => 'bca', 'BcaB05g24035' => 'bca', 'BcaC01g06050' => 'bca', 'BcaC04g19148' => 'bca', 'BcaC04g20761' => 'bca', 'BcaC06g32845' => 'bca', 'BcaC07g41274' => 'bca', 'BcaC09g50827' => 'bca', 'BcaNung00741' => 'bca', 'BcaNung00742' => 'bca', 'BcaNung01859' => 'bca', 'BcaNung03985' => 'bca', 'BcaNung03989' => 'bca', 'BcaNung05661' => 'bca', 'BolC1t00257H' => 'bol', 'BolC1t01956H' => 'bol', 'BolC2t06534H' => 'bol', 'BolC3t14334H' => 'bol', 'BolC5t30451H' => 'bol', 'BolC7t45880H' => 'bol', 'BolC7t46586H' => 'bol', 'BolC8t49301H' => 'bol', 'BolC8t51837H' => 'bol', 'BolC9t56822H' => 'bol', 'BolC9t59235H' => 'bol', 'BraA01t00234Z' => 'bra', 'BraA01t01563Z' => 'bra', 'BraA02t05147Z' => 'bra', 'BraA03t10947Z' => 'bra', 'BraA03t14633Z' => 'bra', 'BraA08t35112Z' => 'bra', 'BraA09t41330Z' => 'bra', 'BraA10t44570Z' => 'bra', 'C01p02670' => 'bna', 'C01p20260' => 'bna', 'C02p05890' => 'bna', 'C03p19530' => 'bna', 'C05p17470' => 'bna', 'C07p53900' => 'bna', 'C07p61630' => 'bna', 'C08p16800' => 'bna', 'C08p42810' => 'bna', 'C09p39480' => 'bna', 'C09p63980' => 'bna', 'CAN.G1001.7' => 'can', 'CAN.G1034.55' => 'can', 'CAN.G143.7' => 'can', 'CAN.G3340.1' => 'can', 'CAN.G358.19' => 'can', 'CAN.G373.2' => 'can', 'CAN.G674.16' => 'can', 'CAN.G674.17' => 'can', 'CAN.G674.18' => 'can', 'CAN.G732.2' => 'can', 'CAN.G732.3' => 'can', 'CAN.G993.39' => 'can', 'CANSAT01G2052' => 'cansat', 'CANSAT80G0070' => 'cansat', 'CANSAT80G0483' => 'cansat', 'CANSAT80G0625' => 'cansat', 'CARHR019690' => 'chi', 'CARHR080280' => 'chi', 'CARHR152750' => 'chi', 'CARHR152760' => 'chi', 'CARHR152770' => 'chi', 'CARHR200340' => 'chi', 'CARHR232370' => 'chi', 'CARHR244670' => 'chi', 'CARHR244680' => 'chi', 'CARHR257520' => 'chi', 'Carub.0001s1872' => 'cru', 'Carub.0006s1130' => 'cru', 'Carub.0007s0396' => 'cru', 'Carub.0007s0397' => 'cru', 'Carub.0007s1608' => 'cru', 'Carub.0008s1068' => 'cru', 'Carub.0008s1077' => 'cru', 'Ca_16158_v3' => 'car', 'Ca_17571_v3' => 'car', 'Ca_21936_v3' => 'car', 'Ca_22350_v3' => 'car', 'CBR_g22445' => 'cbr', 'CBR_g26290' => 'cbr', 'Cc04_g09610' => 'ccan', 'Cc04_g12280' => 'ccan', 'Cc07_g10230' => 'ccan', 'CDE02G0093' => 'cde', 'CDE02G0701' => 'cde', 'CDE04G1050' => 'cde', 'CDE05G1833' => 'cde', 'CDE05G3058' => 'cde', 'CDE05G3380' => 'cde', 'CDE06G0536' => 'cde', 'Cfa006923' => 'cfa', 'Cfa009402' => 'cfa', 'Cfa018751' => 'cfa', 'Cfa019164' => 'cfa', 'Cfa022935' => 'cfa', 'Ciclev10019081m.g' => 'ccl', 'Ciclev10025076m.g' => 'ccl', 'Ciclev10030712m.g' => 'ccl', 'Ciclev10033760m.g' => 'ccl', 'CiPaw.05G105600' => 'cil', 'CiPaw.08G136700' => 'cil', 'CiPaw.11G003900' => 'cil', 'CiPaw.11G023700' => 'cil', 'CiPaw.12G003700' => 'cil', 'ClCG06G017100' => 'cla', 'ClCG06G018110' => 'cla', 'ClCG07G008800' => 'cla', 'ClCG07G015330' => 'cla', 'COL.COLO4_13698' => 'col', 'COL.COLO4_16659' => 'col', 'COL.COLO4_21986' => 'col', 'COL.COLO4_24049' => 'col', 'COL.COLO4_29061' => 'col', 'COL.COLO4_29075' => 'col', 'COL.COLO4_30094' => 'col', 'Cpa.g.c33689' => 'cpa', 'Cpa.g.sc108.39' => 'cpa', 'Cpa.g.sc108.41' => 'cpa', 'Cpa.g.sc1163.1' => 'cpa', 'Cpa.g.sc4.155' => 'cpa', 'Cpa.g.sc6.194' => 'cpa', 'CsaV3_1G000340' => 'csa', 'CsaV3_1G001400' => 'csa', 'CsaV3_4G002220' => 'csa', 'CsaV3_4G005370' => 'csa', 'CSS0007487' => 'camsi', 'CSS0008066' => 'camsi', 'CSS0009120' => 'camsi', 'CSS0015512' => 'camsi', 'CSS0022409' => 'camsi', 'CSS0025358' => 'camsi', 'CSS0044547' => 'camsi', 'DCAR_013057' => 'dca', 'DCAR_015058' => 'dca', 'DCAR_016027' => 'dca', 'DCAR_017327' => 'dca', 'DCAR_020743' => 'dca', 'DCAR_026157' => 'dca', 'DCAR_032339' => 'dca', 'DCAR_032340' => 'dca', 'Dinv11200' => 'din', 'Dinv11201' => 'din', 'Dinv20631' => 'din', 'Dinv23182' => 'din', 'Dinv33466' => 'din', 'Dinv33583' => 'din', 'Dinv38565' => 'din', 'Duzib068G0200' => 'dzi', 'Duzib147G0132' => 'dzi', 'Duzib147G0635' => 'dzi', 'Duzib205G1670' => 'dzi', 'Duzib251G0606' => 'dzi', 'ECA232G3336' => 'eca', 'ECA232G3763' => 'eca', 'ECA232G4845' => 'eca', 'ECA234G1607' => 'eca', 'ECA246G0932' => 'eca', 'ECA247G0781' => 'eca', 'ECA247G1932' => 'eca', 'ECA247G2079' => 'eca', 'ECA247G3338' => 'eca', 'ECA247G4115' => 'eca', 'EL10Ac3g06552' => 'bvu', 'EL10Ac5g10721' => 'bvu', 'EL10Ac5g10722' => 'bvu', 'EL10Ac5g10723' => 'bvu', 'EL10Ac5g11361' => 'bvu', 'EL10Ac6g13553' => 'bvu', 'EL10As8g23872' => 'bvu', 'Eucgr.B00250' => 'egr', 'Eucgr.B00251' => 'egr', 'Eucgr.B03533' => 'egr', 'Eucgr.I02381' => 'egr', 'Eucgr.K02700' => 'egr', 'FAN02G0174' => 'fan', 'FAN02G3146' => 'fan', 'FAN04G1672' => 'fan', 'FAN04G2273' => 'fan', 'FAN05G2791' => 'fan', 'FAN05G4035' => 'fan', 'FAN07G0834' => 'fan', 'FAN08G1198' => 'fan', 'FAN09G4182' => 'fan', 'FAN12G0496' => 'fan', 'FAN13G1027' => 'fan', 'FAN13G2951' => 'fan', 'FAN14G0705' => 'fan', 'FAN14G0720' => 'fan', 'FAN17G0201' => 'fan', 'FAN17G2665' => 'fan', 'FAN18G1456' => 'fan', 'FAN18G1525' => 'fan', 'FAN18G3500' => 'fan', 'FAN28G2670' => 'fan', 'FvH4_1g12391' => 'fve', 'FvH4_4g23220' => 'fve', 'FvH4_5g08810' => 'fve', 'FvH4_5g28960' => 'fve', 'FvH4_6g42820' => 'fve', 'FvH4_6g51110' => 'fve', 'Glyma.02G051802' => 'gma', 'Glyma.04G185300' => 'gma', 'Glyma.05G202900' => 'gma', 'Glyma.08G010300' => 'gma', 'Glyma.16G131900' => 'gma', 'Glyma.17G087900' => 'gma', 'Gohir.A07G048600' => 'ghi', 'Gohir.A11G179000' => 'ghi', 'Gohir.A12G140900' => 'ghi', 'Gohir.A12G140950' => 'ghi', 'Gohir.A12G191700' => 'ghi', 'Gohir.A13G086300' => 'ghi', 'Gohir.D07G052900' => 'ghi', 'Gohir.D11G186600' => 'ghi', 'Gohir.D12G145575' => 'ghi', 'Gohir.D12G145650' => 'ghi', 'Gohir.D12G145725' => 'ghi', 'Gohir.D12G194050' => 'ghi', 'Gohir.D13G091800' => 'ghi', 'Gorai.001G055900' => 'gra', 'Gorai.007G198400' => 'gra', 'Gorai.008G157000' => 'gra', 'Gorai.008G157100' => 'gra', 'Gorai.008G208700' => 'gra', 'Gorai.010G138700' => 'gra', 'GSVIVG01000977001' => 'vvi', 'GSVIVG01007708001' => 'vvi', 'GSVIVG01008587001' => 'vvi', 'GSVIVG01018849001' => 'vvi', 'GSVIVG01032432001' => 'vvi', 'HanXRQChr02g0034131' => 'han', 'HanXRQChr02g0035981' => 'han', 'HanXRQChr02g0035991' => 'han', 'HanXRQChr05g0155611' => 'han', 'HanXRQChr05g0155621' => 'han', 'HanXRQChr08g0236501' => 'han', 'HanXRQChr09g0261321' => 'han', 'HanXRQChr09g0272081' => 'han', 'HanXRQChr10g0310741' => 'han', 'HanXRQChr11g0325591' => 'han', 'HanXRQChr12g0385691' => 'han', 'HanXRQChr13g0387801' => 'han', 'HanXRQChr15g0463011' => 'han', 'Haze_03826' => 'cav', 'Haze_03827' => 'cav', 'Haze_07183' => 'cav', 'Haze_07537' => 'cav', 'Haze_07539' => 'cav', 'Haze_12461' => 'cav', 'Haze_16115' => 'cav', 'Haze_16808' => 'cav', 'Haze_18531' => 'cav', 'Hma1.2p1_0046F.1_g026700' => 'hma', 'Hma1.2p1_0046F.1_g026710' => 'hma', 'Hma1.2p1_0168F.1_g074340' => 'hma', 'Hma1.2p1_0266F.1_g107030' => 'hma', 'Hma1.2p1_0266F.1_g107060' => 'hma', 'Hma1.2p1_0275F.1_g110510' => 'hma', 'Hma1.2p1_0592F.1_g185490' => 'hma', 'Hma1.2p1_0592F.1_g185500' => 'hma', 'Hma1.2p1_0592F.1_g185510' => 'hma', 'Hma1.2p1_0592F.1_g185520' => 'hma', 'Hma1.2p1_0592F.1_g185530' => 'hma', 'Hma1.2p1_0818F.1_g223450' => 'hma', 'HPP92_009708' => 'vpl', 'HPP92_009793' => 'vpl', 'HPP92_009796' => 'vpl', 'HPP92_009797' => 'vpl', 'HPP92_014940' => 'vpl', 'HPP92_014988' => 'vpl', 'Hund02463' => 'sun', 'Hund02760' => 'sun', 'Hund05071' => 'sun', 'Hund10108' => 'sun', 'Hund11204' => 'sun', 'Hund14016' => 'sun', 'Hund16464' => 'sun', 'Lalb_Chr09g0333391' => 'lal', 'Lalb_Chr11g0070461' => 'lal', 'Lalb_Chr12g0201671' => 'lal', 'Lalb_Chr13g0297161' => 'lal', 'Lj1g0002823' => 'lja', 'Lj3C1074T6' => 'lonja', 'Lj4A212T28' => 'lonja', 'Lj4g0005516' => 'lja', 'Lj4g0013705' => 'lja', 'Lj4g0027865' => 'lja', 'Lj5C92G16' => 'lonja', 'Lj5C92T12' => 'lonja', 'Lj7C596T3' => 'lonja', 'Lj9A446G59' => 'lonja', 'Lj9A482G21' => 'lonja', 'Lsat_1_v5_gn_1_28261' => 'lsa', 'Lsat_1_v5_gn_1_28281' => 'lsa', 'Lsat_1_v5_gn_1_32721' => 'lsa', 'Lsat_1_v5_gn_4_151760' => 'lsa', 'Lsat_1_v5_gn_4_2120' => 'lsa', 'Lsat_1_v5_gn_4_75761' => 'lsa', 'Lsat_1_v5_gn_5_10920' => 'lsa', 'Manes.02G099900' => 'mes', 'Manes.11G096200' => 'mes', 'Manes.12G007200' => 'mes', 'Manes.14G048300' => 'mes', 'Manes.17G114700' => 'mes', 'Mapoly0002s0070' => 'mpo', 'Mapoly0029s0099' => 'mpo', 'MBI07_g24742_MAGBIO' => 'mbi', 'MBI10_g27988_MAGBIO' => 'mbi', 'MBI11_g13057_MAGBIO' => 'mbi', 'MD02G1137200' => 'mdo', 'MD06G1137200' => 'mdo', 'MD07G1122300' => 'mdo', 'MD09G1078200' => 'mdo', 'MD13G1123700' => 'mdo', 'MD14G1151900' => 'mdo', 'MD17G1030900' => 'mdo', 'MD17G1068200' => 'mdo', 'MD17G1068600' => 'mdo', 'Medtr3g077540' => 'mtr', 'Medtr4g105530' => 'mtr', 'Medtr8g076580' => 'mtr', 'Medtr8g076590' => 'mtr', 'Medtr8g096410' => 'mtr', 'MELO3C016411.2' => 'cme', 'MELO3C017780.2' => 'cme', 'MELO3C022560.2' => 'cme', 'MELO3C026187.2' => 'cme', 'MELO3C026286.2' => 'cme', 'MELO3C032854.2' => 'cme', 'Migut.H02495' => 'egut', 'Migut.I00561' => 'egut', 'Migut.K01015' => 'egut', 'Migut.K01016' => 'egut', 'Migut.L00743' => 'egut', 'Migut.L00744' => 'egut', 'Migut.L00746' => 'egut', 'Migut.L00798' => 'egut', 'Migut.L00799' => 'egut', 'Migut.N02096' => 'egut', 'MSTRG.11259' => 'ama', 'MSTRG.23142' => 'ama', 'MSTRG.2499' => 'ama', 'Nitab4.5_0000003g0730' => 'nta', 'Nitab4.5_0000137g0020' => 'nta', 'Nitab4.5_0000721g0210' => 'nta', 'Nitab4.5_0000723g0050' => 'nta', 'Nitab4.5_0000913g0070' => 'nta', 'Nitab4.5_0001332g0040' => 'nta', 'Nitab4.5_0001771g0050' => 'nta', 'Nitab4.5_0001918g0050' => 'nta', 'Nitab4.5_0002686g0030' => 'nta', 'Nitab4.5_0003156g0020' => 'nta', 'Nitab4.5_0003383g0040' => 'nta', 'Nitab4.5_0003918g0010' => 'nta', 'Nitab4.5_0006760g0010' => 'nta', 'Nn1g05981' => 'nnu', 'Nn1g06288' => 'nnu', 'Nn3g16371' => 'nnu', 'Nn3g16786' => 'nnu', 'Nn4g22232' => 'nnu', 'Oeu005144.1' => 'oeu', 'Oeu005145.1' => 'oeu', 'Oeu011348.1' => 'oeu', 'Oeu016415.1' => 'oeu', 'Oeu023501.1' => 'oeu', 'Oeu044473.1' => 'oeu', 'Oeu048892.2' => 'oeu', 'Os01g0549200' => 'osa', 'Os02g0469300' => 'osa', 'Os04g0311100' => 'osa', 'Os06g0474900' => 'osa', 'Os10g0181700' => 'osa', 'Os11g0454800' => 'osa', 'Peaxi162Scf00037g00714' => 'pax', 'Peaxi162Scf00084g01217' => 'pax', 'Peaxi162Scf00257g00217' => 'pax', 'Peaxi162Scf00516g00215' => 'pax', 'Peaxi162Scf00689g00123' => 'pax', 'PGR044G2719' => 'pgr', 'PGR083G1360' => 'pgr', 'PGR102G2849' => 'pgr', 'PGR119G2534' => 'pgr', 'PGSC0003DMG400003538' => 'stu', 'PGSC0003DMG400028138' => 'stu', 'PGSC0003DMG400031732' => 'stu', 'PGSC0003DMG400038165' => 'stu', 'Phvul.002G284600' => 'pvu', 'Phvul.003G258200' => 'pvu', 'Phvul.009G176500' => 'pvu', 'Potri.003G167201' => 'ptr', 'Potri.005G118400' => 'ptr', 'Potri.012G089000' => 'ptr', 'Potri.012G102800' => 'ptr', 'Potri.015G079400' => 'ptr', 'Potri.015G100900' => 'ptr', 'Pp3c14_9810' => 'ppa', 'Pp3c15_10450' => 'ppa', 'Pp3c20_19150' => 'ppa', 'Pp3c23_12740' => 'ppa', 'Pp3c23_6310' => 'ppa', 'Pp3c24_3720' => 'ppa', 'Pp3c27_2580' => 'ppa', 'Pp3c9_8990' => 'ppa', 'PRCOL_00002854' => 'pco', 'Prupe.1G221200' => 'ppe', 'Prupe.3G289000' => 'ppe', 'Prupe.5G147000' => 'ppe', 'Prupe.6G157300' => 'ppe', 'Prupe.7G163400' => 'ppe', 'Psat0s2177g0040' => 'psa', 'Psat3g174760' => 'psa', 'Psat3g192160' => 'psa', 'Psat4g058520' => 'psa', 'Psat4g096840' => 'psa', 'Psat7g037320' => 'psa', 'PSO017G1274' => 'pso', 'PSO017G5166' => 'pso', 'PSO063G4558' => 'pso', 'PSO170G4458' => 'pso', 'PSO170G5005' => 'pso', 'PSO210G6156' => 'pso', 'PSO210G6635' => 'pso', 'PSO210G7397' => 'pso', 'PSO210G7700' => 'pso', 'PSO455G0035' => 'pso', 'PSO455G0180' => 'pso', 'PSO478G4515' => 'pso', 'PSO832G1305' => 'pso', 'PSO832G3489' => 'pso', 'QL02p075247' => 'qlo', 'QL03p051148' => 'qlo', 'QL05p010313' => 'qlo', 'QL06p034627' => 'qlo', 'QL10p001889' => 'qlo', 'QL10p010846' => 'qlo', 'RcHm_v2.0_Chr1g0350621' => 'rch', 'RcHm_v2.0_Chr1g0350641' => 'rch', 'RcHm_v2.0_Chr2g0092891' => 'rch', 'RcHm_v2.0_Chr2g0100251' => 'rch', 'RcHm_v2.0_Chr2g0158661' => 'rch', 'RcHm_v2.0_Chr2g0172741' => 'rch', 'RcHm_v2.0_Chr4g0429571' => 'rch', 'RcHm_v2.0_Chr5g0042471' => 'rch', 'RcHm_v2.0_Chr7g0189451' => 'rch', 'Rhsim08G0052000' => 'rsi', 'Rhsim08G0174400' => 'rsi', 'Rhsim08G0193200' => 'rsi', 'Rhsim10G0214800' => 'rsi', 'Rhsim10G0214900' => 'rsi', 'Rhsim10G0215000' => 'rsi', 'Rhsim12G0022900' => 'rsi', 'Rhsim12G0177500' => 'rsi', 'Rhsim12G0177700' => 'rsi', 'Sabra03G0122600' => 'sbr', 'Sabra05G0097400' => 'sbr', 'Sabra12G0064100' => 'sbr', 'Sabra15G0121300' => 'sbr', 'SalBow2G0642' => 'sbo', 'SalBow5G2667' => 'sbo', 'SalBow5G4873' => 'sbo', 'SalBow8G2395' => 'sbo', 'Sc03g0003290' => 'sci', 'Sc10g0010130' => 'sci', 'Sc22g0003650' => 'sci', 'Sed0001603' => 'sed', 'Sed0004259' => 'sed', 'Sed0006789' => 'sed', 'Sed0011838' => 'sed', 'Sed0012964' => 'sed', 'Sed0016383' => 'sed', 'Sed0019010' => 'sed', 'Sed0020188' => 'sed', 'SEGI_04702' => 'sgi', 'SEGI_17231' => 'sgi', 'SEGI_18877' => 'sgi', 'SEGI_25196' => 'sgi', 'SEGI_25515' => 'sgi', 'SEGI_28445' => 'sgi', 'SEGI_37452' => 'sgi', 'SGA_v2.0_scaffold188G40336' => 'sas', 'SGA_v2.0_scaffold228G43247' => 'sas', 'SGA_v2.0_scaffold280G46853' => 'sas', 'SGA_v2.0_scaffold34G13808' => 'sas', 'SGA_v2.0_scaffold40G15576' => 'sas', 'SGA_v2.0_scaffold611G53188' => 'sas', 'SGA_v2.0_scaffold78G25461' => 'sas', 'SGA_v2.0_scaffold90G27888' => 'sas', 'SHI08601' => 'shi', 'SHI08606' => 'shi', 'SHI17117' => 'shi', 'SHI17119' => 'shi', 'SMO118G0201' => 'smo', 'SMO169G0247' => 'smo', 'SMO176G0006' => 'smo', 'SMO176G0015' => 'smo', 'SMO202G0006' => 'smo', 'SMO240G0050' => 'smo', 'SMO286G0009' => 'smo', 'SMO338G0033' => 'smo', 'SMO356G0533' => 'smo', 'SMO364G0382' => 'smo', 'SMO367G0166' => 'smo', 'SMO367G1098' => 'smo', 'Solyc01g009920.3' => 'sly', 'Solyc01g099300.3' => 'sly', 'Solyc02g084700.3' => 'sly', 'Solyc03g097520.3' => 'sly', 'Solyc06g071580.3' => 'sly', 'Solyc10g081760.3' => 'sly', 'Sopen01g005480' => 'spe', 'Sopen01g042850' => 'spe', 'Sopen02g029370' => 'spe', 'Sopen03g028280' => 'spe', 'Sopen06g027870' => 'spe', 'Sopen10g032270' => 'spe', 'Sp5g18180' => 'spa', 'Sp6g12880' => 'spa', 'Sp6g30850' => 'spa', 'Sp7g22960' => 'spa', 'Sp7g34010' => 'spa', 'SpUn1326_0010' => 'spa', 'TAR371G0242' => 'tar', 'TAR622G0638' => 'tar', 'TAR628G1548' => 'tar', 'TAR629G1079' => 'tar', 'TAR629G3413' => 'tar', 'THA.LOC104804249' => 'tha', 'THA.LOC104808315' => 'tha', 'THA.LOC104809238' => 'tha', 'THA.LOC104825484' => 'tha', 'Thecc.01G025500' => 'tca', 'Thecc.03G015800' => 'tca', 'Thecc.03G018000' => 'tca', 'Thecc.03G134800' => 'tca', 'Thecc.04G014700' => 'tca', 'Thhalv10006991m.g' => 'esa', 'Thhalv10012707m.g' => 'esa', 'Thhalv10015739m.g' => 'esa', 'Thhalv10024553m.g' => 'esa', 'Thhalv10024673m.g' => 'esa', 'Thhalv10029187m.g' => 'esa', 'TPR.G12971' => 'tpr', 'TPR.G29396' => 'tpr', 'TPR.G33376' => 'tpr', 'TPR.G35508' => 'tpr', 'TPR.G35516' => 'tpr', 'TPR.G37317' => 'tpr', 'TPR.G37389' => 'tpr', 'TPR.G37523' => 'tpr', 'TPR.G559' => 'tpr', 'TWI14G0070' => 'twi', 'TWI14G0729' => 'twi', 'TWI18G0596' => 'twi', 'TWI39G0780' => 'twi', 'TWI39G0850' => 'twi', 'TWI73G1052' => 'twi', 'unitig_52.g17485' => 'ugi', 'unitig_61.g26355' => 'ugi', 'vmacro01040' => 'vma', 'vmacro16731' => 'vma', 'vmacro18270' => 'vma', 'vmacro19142' => 'vma', 'vmacro19407' => 'vma', 'vmacro19408' => 'vma', 'vmacro21899' => 'vma', 'vmacro21900' => 'vma', 'vmacro21901' => 'vma', 'VMungo0251G0490' => 'vmu', 'VMungo0251G1748' => 'vmu', 'VMungo1309G0421' => 'vmu', 'Zm00001eb086500' => 'zma', 'Zm00001eb150680' => 'zma', 'Zm00001eb162330' => 'zma', 'Zm00001eb203130' => 'zma', 'Zm00001eb369480' => 'zma', 'Zm00001eb382340' => 'zma', 'Zm00001eb416360' => 'zma' ) $gf_id = 'HOM05D000902' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000902' ) $data_identifier = 'HOM05D000902' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 13, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 10, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 6, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 9, 'hma' => (int) 12, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 4, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 6, 'ppa' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 6, 'rch' => (int) 9, 'rsi' => (int) 9, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 12, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 3, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416360' $species_info = array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ) $local_species = 'pco' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000902', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '663', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02470' => 'bna', 'A01p16260' => 'bna', 'A02p01680' => 'bna', 'A03p16600' => 'bna', 'A03p55660' => 'bna', 'A03p64160' => 'bna', 'A03p64170' => 'bna', 'A08p31900' => 'bna', 'A09p59530' => 'bna', 'A10p08230' => 'bna', 'A10p25090' => 'bna', 'Aa31LG3G7100' => 'aar', 'Aa31LG3G7110' => 'aar', 'Aa31LG6G13160' => 'aar', 'Aa31LG7G10770' => 'aar', 'Aa31LG7G3830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2723' => 'aag', 'Actinidia08045' => 'ach', 'Actinidia08888' => 'ach', 'Actinidia18333' => 'ach', 'Actinidia19334' => 'ach', 'Actinidia25552' => 'ach', 'Actinidia26089' => 'ach', 'Actinidia30615' => 'ach', 'Actinidia30616' => 'ach', 'Actinidia33083' => 'ach', 'Actinidia35762' => 'ach', 'Ah.02g110620' => 'amhyb', 'Ah.11g046390' => 'amhyb', 'AL1G31670' => 'aly', 'AL6G23730' => 'aly', 'AL7G14740' => 'aly', 'AL7G14750' => 'aly', 'AL7G14760' => 'aly', 'AL7G28220' => 'aly', 'AL8G24940' => 'aly', 'Aqoxy3G01665' => 'aox', 'Aqoxy3G02853' => 'aox', 'Aqoxy5G01513' => 'aox', 'Aqoxy5G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8SKA4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ75LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKDA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0LJZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7REX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZP4YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWX7I5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2QKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS0L9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPCD8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q161UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC7XCF' => 'arhy', 'AT1G19100' => 'ath', 'AT4G24970' => 'ath', 'AT4G36270' => 'ath', 'AT4G36280' => 'ath', 'AT4G36290' => 'ath', 'AT5G13130' => 'ath', 'AT5G50780' => 'ath', 'ATR0582G266' => 'atr', 'ATR0661G195' => 'atr', 'ATR1152G031' => 'atr', 'Atru.chr11.2382' => 'acertr', 'Atru.chr12.2337' => 'acertr', 'Atru.chr3.744' => 'acertr', 'Atru.chr6.1870' => 'acertr', 'Atru.chr9.2515' => 'acertr', 'AUR62004120' => 'cqu', 'AUR62005667' => 'cqu', 'AUR62007634' => 'cqu', 'AUR62008186' => 'cqu', 'AUR62008187' => 'cqu', 'AUR62008188' => 'cqu', 'AUR62027954' => 'cqu', 'AUR62028766' => 'cqu', 'AUR62028767' => 'cqu', 'AUR62028768' => 'cqu', 'AUR62028886' => 'cqu', 'AUR62029563' => 'cqu', 'AUR62038832' => 'cqu', 'BcaB01g04149' => 'bca', 'BcaB03g12940' => 'bca', 'BcaB03g13090' => 'bca', 'BcaB03g14466' => 'bca', 'BcaB05g24035' => 'bca', 'BcaC01g06050' => 'bca', 'BcaC04g19148' => 'bca', 'BcaC04g20761' => 'bca', 'BcaC06g32845' => 'bca', 'BcaC07g41274' => 'bca', 'BcaC09g50827' => 'bca', 'BcaNung00741' => 'bca', 'BcaNung00742' => 'bca', 'BcaNung01859' => 'bca', 'BcaNung03985' => 'bca', 'BcaNung03989' => 'bca', 'BcaNung05661' => 'bca', 'BolC1t00257H' => 'bol', 'BolC1t01956H' => 'bol', 'BolC2t06534H' => 'bol', 'BolC3t14334H' => 'bol', 'BolC5t30451H' => 'bol', 'BolC7t45880H' => 'bol', 'BolC7t46586H' => 'bol', 'BolC8t49301H' => 'bol', 'BolC8t51837H' => 'bol', 'BolC9t56822H' => 'bol', 'BolC9t59235H' => 'bol', 'BraA01t00234Z' => 'bra', 'BraA01t01563Z' => 'bra', 'BraA02t05147Z' => 'bra', 'BraA03t10947Z' => 'bra', 'BraA03t14633Z' => 'bra', 'BraA08t35112Z' => 'bra', 'BraA09t41330Z' => 'bra', 'BraA10t44570Z' => 'bra', 'C01p02670' => 'bna', 'C01p20260' => 'bna', 'C02p05890' => 'bna', 'C03p19530' => 'bna', 'C05p17470' => 'bna', 'C07p53900' => 'bna', 'C07p61630' => 'bna', 'C08p16800' => 'bna', 'C08p42810' => 'bna', 'C09p39480' => 'bna', 'C09p63980' => 'bna', 'CAN.G1001.7' => 'can', 'CAN.G1034.55' => 'can', 'CAN.G143.7' => 'can', 'CAN.G3340.1' => 'can', 'CAN.G358.19' => 'can', 'CAN.G373.2' => 'can', 'CAN.G674.16' => 'can', 'CAN.G674.17' => 'can', 'CAN.G674.18' => 'can', 'CAN.G732.2' => 'can', 'CAN.G732.3' => 'can', 'CAN.G993.39' => 'can', 'CANSAT01G2052' => 'cansat', 'CANSAT80G0070' => 'cansat', 'CANSAT80G0483' => 'cansat', 'CANSAT80G0625' => 'cansat', 'CARHR019690' => 'chi', 'CARHR080280' => 'chi', 'CARHR152750' => 'chi', 'CARHR152760' => 'chi', 'CARHR152770' => 'chi', 'CARHR200340' => 'chi', 'CARHR232370' => 'chi', 'CARHR244670' => 'chi', 'CARHR244680' => 'chi', 'CARHR257520' => 'chi', 'Carub.0001s1872' => 'cru', 'Carub.0006s1130' => 'cru', 'Carub.0007s0396' => 'cru', 'Carub.0007s0397' => 'cru', 'Carub.0007s1608' => 'cru', 'Carub.0008s1068' => 'cru', 'Carub.0008s1077' => 'cru', 'Ca_16158_v3' => 'car', 'Ca_17571_v3' => 'car', 'Ca_21936_v3' => 'car', 'Ca_22350_v3' => 'car', 'CBR_g22445' => 'cbr', 'CBR_g26290' => 'cbr', 'Cc04_g09610' => 'ccan', 'Cc04_g12280' => 'ccan', 'Cc07_g10230' => 'ccan', 'CDE02G0093' => 'cde', 'CDE02G0701' => 'cde', 'CDE04G1050' => 'cde', 'CDE05G1833' => 'cde', 'CDE05G3058' => 'cde', 'CDE05G3380' => 'cde', 'CDE06G0536' => 'cde', 'Cfa006923' => 'cfa', 'Cfa009402' => 'cfa', 'Cfa018751' => 'cfa', 'Cfa019164' => 'cfa', 'Cfa022935' => 'cfa', 'Ciclev10019081m.g' => 'ccl', 'Ciclev10025076m.g' => 'ccl', 'Ciclev10030712m.g' => 'ccl', 'Ciclev10033760m.g' => 'ccl', 'CiPaw.05G105600' => 'cil', 'CiPaw.08G136700' => 'cil', 'CiPaw.11G003900' => 'cil', 'CiPaw.11G023700' => 'cil', 'CiPaw.12G003700' => 'cil', 'ClCG06G017100' => 'cla', 'ClCG06G018110' => 'cla', 'ClCG07G008800' => 'cla', 'ClCG07G015330' => 'cla', 'COL.COLO4_13698' => 'col', 'COL.COLO4_16659' => 'col', 'COL.COLO4_21986' => 'col', 'COL.COLO4_24049' => 'col', 'COL.COLO4_29061' => 'col', 'COL.COLO4_29075' => 'col', 'COL.COLO4_30094' => 'col', 'Cpa.g.c33689' => 'cpa', 'Cpa.g.sc108.39' => 'cpa', 'Cpa.g.sc108.41' => 'cpa', 'Cpa.g.sc1163.1' => 'cpa', 'Cpa.g.sc4.155' => 'cpa', 'Cpa.g.sc6.194' => 'cpa', 'CsaV3_1G000340' => 'csa', 'CsaV3_1G001400' => 'csa', 'CsaV3_4G002220' => 'csa', 'CsaV3_4G005370' => 'csa', 'CSS0007487' => 'camsi', 'CSS0008066' => 'camsi', 'CSS0009120' => 'camsi', 'CSS0015512' => 'camsi', 'CSS0022409' => 'camsi', 'CSS0025358' => 'camsi', 'CSS0044547' => 'camsi', 'DCAR_013057' => 'dca', 'DCAR_015058' => 'dca', 'DCAR_016027' => 'dca', 'DCAR_017327' => 'dca', 'DCAR_020743' => 'dca', 'DCAR_026157' => 'dca', 'DCAR_032339' => 'dca', 'DCAR_032340' => 'dca', 'Dinv11200' => 'din', 'Dinv11201' => 'din', 'Dinv20631' => 'din', 'Dinv23182' => 'din', 'Dinv33466' => 'din', 'Dinv33583' => 'din', 'Dinv38565' => 'din', 'Duzib068G0200' => 'dzi', 'Duzib147G0132' => 'dzi', 'Duzib147G0635' => 'dzi', 'Duzib205G1670' => 'dzi', 'Duzib251G0606' => 'dzi', 'ECA232G3336' => 'eca', 'ECA232G3763' => 'eca', 'ECA232G4845' => 'eca', 'ECA234G1607' => 'eca', 'ECA246G0932' => 'eca', 'ECA247G0781' => 'eca', 'ECA247G1932' => 'eca', 'ECA247G2079' => 'eca', 'ECA247G3338' => 'eca', 'ECA247G4115' => 'eca', 'EL10Ac3g06552' => 'bvu', 'EL10Ac5g10721' => 'bvu', 'EL10Ac5g10722' => 'bvu', 'EL10Ac5g10723' => 'bvu', 'EL10Ac5g11361' => 'bvu', 'EL10Ac6g13553' => 'bvu', 'EL10As8g23872' => 'bvu', 'Eucgr.B00250' => 'egr', 'Eucgr.B00251' => 'egr', 'Eucgr.B03533' => 'egr', 'Eucgr.I02381' => 'egr', 'Eucgr.K02700' => 'egr', 'FAN02G0174' => 'fan', 'FAN02G3146' => 'fan', 'FAN04G1672' => 'fan', 'FAN04G2273' => 'fan', 'FAN05G2791' => 'fan', 'FAN05G4035' => 'fan', 'FAN07G0834' => 'fan', 'FAN08G1198' => 'fan', 'FAN09G4182' => 'fan', 'FAN12G0496' => 'fan', 'FAN13G1027' => 'fan', 'FAN13G2951' => 'fan', 'FAN14G0705' => 'fan', 'FAN14G0720' => 'fan', 'FAN17G0201' => 'fan', 'FAN17G2665' => 'fan', 'FAN18G1456' => 'fan', 'FAN18G1525' => 'fan', 'FAN18G3500' => 'fan', 'FAN28G2670' => 'fan', 'FvH4_1g12391' => 'fve', 'FvH4_4g23220' => 'fve', 'FvH4_5g08810' => 'fve', 'FvH4_5g28960' => 'fve', 'FvH4_6g42820' => 'fve', 'FvH4_6g51110' => 'fve', 'Glyma.02G051802' => 'gma', 'Glyma.04G185300' => 'gma', 'Glyma.05G202900' => 'gma', 'Glyma.08G010300' => 'gma', 'Glyma.16G131900' => 'gma', 'Glyma.17G087900' => 'gma', 'Gohir.A07G048600' => 'ghi', 'Gohir.A11G179000' => 'ghi', 'Gohir.A12G140900' => 'ghi', 'Gohir.A12G140950' => 'ghi', 'Gohir.A12G191700' => 'ghi', 'Gohir.A13G086300' => 'ghi', 'Gohir.D07G052900' => 'ghi', 'Gohir.D11G186600' => 'ghi', 'Gohir.D12G145575' => 'ghi', 'Gohir.D12G145650' => 'ghi', 'Gohir.D12G145725' => 'ghi', 'Gohir.D12G194050' => 'ghi', 'Gohir.D13G091800' => 'ghi', 'Gorai.001G055900' => 'gra', 'Gorai.007G198400' => 'gra', 'Gorai.008G157000' => 'gra', 'Gorai.008G157100' => 'gra', 'Gorai.008G208700' => 'gra', 'Gorai.010G138700' => 'gra', 'GSVIVG01000977001' => 'vvi', 'GSVIVG01007708001' => 'vvi', 'GSVIVG01008587001' => 'vvi', 'GSVIVG01018849001' => 'vvi', 'GSVIVG01032432001' => 'vvi', 'HanXRQChr02g0034131' => 'han', 'HanXRQChr02g0035981' => 'han', 'HanXRQChr02g0035991' => 'han', 'HanXRQChr05g0155611' => 'han', 'HanXRQChr05g0155621' => 'han', 'HanXRQChr08g0236501' => 'han', 'HanXRQChr09g0261321' => 'han', 'HanXRQChr09g0272081' => 'han', 'HanXRQChr10g0310741' => 'han', 'HanXRQChr11g0325591' => 'han', 'HanXRQChr12g0385691' => 'han', 'HanXRQChr13g0387801' => 'han', 'HanXRQChr15g0463011' => 'han', 'Haze_03826' => 'cav', 'Haze_03827' => 'cav', 'Haze_07183' => 'cav', 'Haze_07537' => 'cav', 'Haze_07539' => 'cav', 'Haze_12461' => 'cav', 'Haze_16115' => 'cav', 'Haze_16808' => 'cav', 'Haze_18531' => 'cav', 'Hma1.2p1_0046F.1_g026700' => 'hma', 'Hma1.2p1_0046F.1_g026710' => 'hma', 'Hma1.2p1_0168F.1_g074340' => 'hma', 'Hma1.2p1_0266F.1_g107030' => 'hma', 'Hma1.2p1_0266F.1_g107060' => 'hma', 'Hma1.2p1_0275F.1_g110510' => 'hma', 'Hma1.2p1_0592F.1_g185490' => 'hma', 'Hma1.2p1_0592F.1_g185500' => 'hma', 'Hma1.2p1_0592F.1_g185510' => 'hma', 'Hma1.2p1_0592F.1_g185520' => 'hma', 'Hma1.2p1_0592F.1_g185530' => 'hma', 'Hma1.2p1_0818F.1_g223450' => 'hma', 'HPP92_009708' => 'vpl', 'HPP92_009793' => 'vpl', 'HPP92_009796' => 'vpl', 'HPP92_009797' => 'vpl', 'HPP92_014940' => 'vpl', 'HPP92_014988' => 'vpl', 'Hund02463' => 'sun', 'Hund02760' => 'sun', 'Hund05071' => 'sun', 'Hund10108' => 'sun', 'Hund11204' => 'sun', 'Hund14016' => 'sun', 'Hund16464' => 'sun', 'Lalb_Chr09g0333391' => 'lal', 'Lalb_Chr11g0070461' => 'lal', 'Lalb_Chr12g0201671' => 'lal', 'Lalb_Chr13g0297161' => 'lal', 'Lj1g0002823' => 'lja', 'Lj3C1074T6' => 'lonja', 'Lj4A212T28' => 'lonja', 'Lj4g0005516' => 'lja', 'Lj4g0013705' => 'lja', 'Lj4g0027865' => 'lja', 'Lj5C92G16' => 'lonja', 'Lj5C92T12' => 'lonja', 'Lj7C596T3' => 'lonja', 'Lj9A446G59' => 'lonja', 'Lj9A482G21' => 'lonja', 'Lsat_1_v5_gn_1_28261' => 'lsa', 'Lsat_1_v5_gn_1_28281' => 'lsa', 'Lsat_1_v5_gn_1_32721' => 'lsa', 'Lsat_1_v5_gn_4_151760' => 'lsa', 'Lsat_1_v5_gn_4_2120' => 'lsa', 'Lsat_1_v5_gn_4_75761' => 'lsa', 'Lsat_1_v5_gn_5_10920' => 'lsa', 'Manes.02G099900' => 'mes', 'Manes.11G096200' => 'mes', 'Manes.12G007200' => 'mes', 'Manes.14G048300' => 'mes', 'Manes.17G114700' => 'mes', 'Mapoly0002s0070' => 'mpo', 'Mapoly0029s0099' => 'mpo', 'MBI07_g24742_MAGBIO' => 'mbi', 'MBI10_g27988_MAGBIO' => 'mbi', 'MBI11_g13057_MAGBIO' => 'mbi', 'MD02G1137200' => 'mdo', 'MD06G1137200' => 'mdo', 'MD07G1122300' => 'mdo', 'MD09G1078200' => 'mdo', 'MD13G1123700' => 'mdo', 'MD14G1151900' => 'mdo', 'MD17G1030900' => 'mdo', 'MD17G1068200' => 'mdo', 'MD17G1068600' => 'mdo', 'Medtr3g077540' => 'mtr', 'Medtr4g105530' => 'mtr', 'Medtr8g076580' => 'mtr', 'Medtr8g076590' => 'mtr', 'Medtr8g096410' => 'mtr', 'MELO3C016411.2' => 'cme', 'MELO3C017780.2' => 'cme', 'MELO3C022560.2' => 'cme', 'MELO3C026187.2' => 'cme', 'MELO3C026286.2' => 'cme', 'MELO3C032854.2' => 'cme', 'Migut.H02495' => 'egut', 'Migut.I00561' => 'egut', 'Migut.K01015' => 'egut', 'Migut.K01016' => 'egut', 'Migut.L00743' => 'egut', 'Migut.L00744' => 'egut', 'Migut.L00746' => 'egut', 'Migut.L00798' => 'egut', 'Migut.L00799' => 'egut', 'Migut.N02096' => 'egut', 'MSTRG.11259' => 'ama', 'MSTRG.23142' => 'ama', 'MSTRG.2499' => 'ama', 'Nitab4.5_0000003g0730' => 'nta', 'Nitab4.5_0000137g0020' => 'nta', 'Nitab4.5_0000721g0210' => 'nta', 'Nitab4.5_0000723g0050' => 'nta', 'Nitab4.5_0000913g0070' => 'nta', 'Nitab4.5_0001332g0040' => 'nta', 'Nitab4.5_0001771g0050' => 'nta', 'Nitab4.5_0001918g0050' => 'nta', 'Nitab4.5_0002686g0030' => 'nta', 'Nitab4.5_0003156g0020' => 'nta', 'Nitab4.5_0003383g0040' => 'nta', 'Nitab4.5_0003918g0010' => 'nta', 'Nitab4.5_0006760g0010' => 'nta', 'Nn1g05981' => 'nnu', 'Nn1g06288' => 'nnu', 'Nn3g16371' => 'nnu', 'Nn3g16786' => 'nnu', 'Nn4g22232' => 'nnu', 'Oeu005144.1' => 'oeu', 'Oeu005145.1' => 'oeu', 'Oeu011348.1' => 'oeu', 'Oeu016415.1' => 'oeu', 'Oeu023501.1' => 'oeu', 'Oeu044473.1' => 'oeu', 'Oeu048892.2' => 'oeu', 'Os01g0549200' => 'osa', 'Os02g0469300' => 'osa', 'Os04g0311100' => 'osa', 'Os06g0474900' => 'osa', 'Os10g0181700' => 'osa', 'Os11g0454800' => 'osa', 'Peaxi162Scf00037g00714' => 'pax', 'Peaxi162Scf00084g01217' => 'pax', 'Peaxi162Scf00257g00217' => 'pax', 'Peaxi162Scf00516g00215' => 'pax', 'Peaxi162Scf00689g00123' => 'pax', 'PGR044G2719' => 'pgr', 'PGR083G1360' => 'pgr', 'PGR102G2849' => 'pgr', 'PGR119G2534' => 'pgr', 'PGSC0003DMG400003538' => 'stu', 'PGSC0003DMG400028138' => 'stu', 'PGSC0003DMG400031732' => 'stu', 'PGSC0003DMG400038165' => 'stu', 'Phvul.002G284600' => 'pvu', 'Phvul.003G258200' => 'pvu', 'Phvul.009G176500' => 'pvu', 'Potri.003G167201' => 'ptr', 'Potri.005G118400' => 'ptr', 'Potri.012G089000' => 'ptr', 'Potri.012G102800' => 'ptr', 'Potri.015G079400' => 'ptr', 'Potri.015G100900' => 'ptr', 'Pp3c14_9810' => 'ppa', 'Pp3c15_10450' => 'ppa', 'Pp3c20_19150' => 'ppa', 'Pp3c23_12740' => 'ppa', 'Pp3c23_6310' => 'ppa', 'Pp3c24_3720' => 'ppa', 'Pp3c27_2580' => 'ppa', 'Pp3c9_8990' => 'ppa', 'PRCOL_00002854' => 'pco', 'Prupe.1G221200' => 'ppe', 'Prupe.3G289000' => 'ppe', 'Prupe.5G147000' => 'ppe', 'Prupe.6G157300' => 'ppe', 'Prupe.7G163400' => 'ppe', 'Psat0s2177g0040' => 'psa', 'Psat3g174760' => 'psa', 'Psat3g192160' => 'psa', 'Psat4g058520' => 'psa', 'Psat4g096840' => 'psa', 'Psat7g037320' => 'psa', 'PSO017G1274' => 'pso', 'PSO017G5166' => 'pso', 'PSO063G4558' => 'pso', 'PSO170G4458' => 'pso', 'PSO170G5005' => 'pso', 'PSO210G6156' => 'pso', 'PSO210G6635' => 'pso', 'PSO210G7397' => 'pso', 'PSO210G7700' => 'pso', 'PSO455G0035' => 'pso', 'PSO455G0180' => 'pso', 'PSO478G4515' => 'pso', 'PSO832G1305' => 'pso', 'PSO832G3489' => 'pso', 'QL02p075247' => 'qlo', 'QL03p051148' => 'qlo', 'QL05p010313' => 'qlo', 'QL06p034627' => 'qlo', 'QL10p001889' => 'qlo', 'QL10p010846' => 'qlo', 'RcHm_v2.0_Chr1g0350621' => 'rch', 'RcHm_v2.0_Chr1g0350641' => 'rch', 'RcHm_v2.0_Chr2g0092891' => 'rch', 'RcHm_v2.0_Chr2g0100251' => 'rch', 'RcHm_v2.0_Chr2g0158661' => 'rch', 'RcHm_v2.0_Chr2g0172741' => 'rch', 'RcHm_v2.0_Chr4g0429571' => 'rch', 'RcHm_v2.0_Chr5g0042471' => 'rch', 'RcHm_v2.0_Chr7g0189451' => 'rch', 'Rhsim08G0052000' => 'rsi', 'Rhsim08G0174400' => 'rsi', 'Rhsim08G0193200' => 'rsi', 'Rhsim10G0214800' => 'rsi', 'Rhsim10G0214900' => 'rsi', 'Rhsim10G0215000' => 'rsi', 'Rhsim12G0022900' => 'rsi', 'Rhsim12G0177500' => 'rsi', 'Rhsim12G0177700' => 'rsi', 'Sabra03G0122600' => 'sbr', 'Sabra05G0097400' => 'sbr', 'Sabra12G0064100' => 'sbr', 'Sabra15G0121300' => 'sbr', 'SalBow2G0642' => 'sbo', 'SalBow5G2667' => 'sbo', 'SalBow5G4873' => 'sbo', 'SalBow8G2395' => 'sbo', 'Sc03g0003290' => 'sci', 'Sc10g0010130' => 'sci', 'Sc22g0003650' => 'sci', 'Sed0001603' => 'sed', 'Sed0004259' => 'sed', 'Sed0006789' => 'sed', 'Sed0011838' => 'sed', 'Sed0012964' => 'sed', 'Sed0016383' => 'sed', 'Sed0019010' => 'sed', 'Sed0020188' => 'sed', 'SEGI_04702' => 'sgi', 'SEGI_17231' => 'sgi', 'SEGI_18877' => 'sgi', 'SEGI_25196' => 'sgi', 'SEGI_25515' => 'sgi', 'SEGI_28445' => 'sgi', 'SEGI_37452' => 'sgi', 'SGA_v2.0_scaffold188G40336' => 'sas', 'SGA_v2.0_scaffold228G43247' => 'sas', 'SGA_v2.0_scaffold280G46853' => 'sas', 'SGA_v2.0_scaffold34G13808' => 'sas', 'SGA_v2.0_scaffold40G15576' => 'sas', 'SGA_v2.0_scaffold611G53188' => 'sas', 'SGA_v2.0_scaffold78G25461' => 'sas', 'SGA_v2.0_scaffold90G27888' => 'sas', 'SHI08601' => 'shi', 'SHI08606' => 'shi', 'SHI17117' => 'shi', 'SHI17119' => 'shi', 'SMO118G0201' => 'smo', 'SMO169G0247' => 'smo', 'SMO176G0006' => 'smo', 'SMO176G0015' => 'smo', 'SMO202G0006' => 'smo', 'SMO240G0050' => 'smo', 'SMO286G0009' => 'smo', 'SMO338G0033' => 'smo', 'SMO356G0533' => 'smo', 'SMO364G0382' => 'smo', 'SMO367G0166' => 'smo', 'SMO367G1098' => 'smo', 'Solyc01g009920.3' => 'sly', 'Solyc01g099300.3' => 'sly', 'Solyc02g084700.3' => 'sly', 'Solyc03g097520.3' => 'sly', 'Solyc06g071580.3' => 'sly', 'Solyc10g081760.3' => 'sly', 'Sopen01g005480' => 'spe', 'Sopen01g042850' => 'spe', 'Sopen02g029370' => 'spe', 'Sopen03g028280' => 'spe', 'Sopen06g027870' => 'spe', 'Sopen10g032270' => 'spe', 'Sp5g18180' => 'spa', 'Sp6g12880' => 'spa', 'Sp6g30850' => 'spa', 'Sp7g22960' => 'spa', 'Sp7g34010' => 'spa', 'SpUn1326_0010' => 'spa', 'TAR371G0242' => 'tar', 'TAR622G0638' => 'tar', 'TAR628G1548' => 'tar', 'TAR629G1079' => 'tar', 'TAR629G3413' => 'tar', 'THA.LOC104804249' => 'tha', 'THA.LOC104808315' => 'tha', 'THA.LOC104809238' => 'tha', 'THA.LOC104825484' => 'tha', 'Thecc.01G025500' => 'tca', 'Thecc.03G015800' => 'tca', 'Thecc.03G018000' => 'tca', 'Thecc.03G134800' => 'tca', 'Thecc.04G014700' => 'tca', 'Thhalv10006991m.g' => 'esa', 'Thhalv10012707m.g' => 'esa', 'Thhalv10015739m.g' => 'esa', 'Thhalv10024553m.g' => 'esa', 'Thhalv10024673m.g' => 'esa', 'Thhalv10029187m.g' => 'esa', 'TPR.G12971' => 'tpr', 'TPR.G29396' => 'tpr', 'TPR.G33376' => 'tpr', 'TPR.G35508' => 'tpr', 'TPR.G35516' => 'tpr', 'TPR.G37317' => 'tpr', 'TPR.G37389' => 'tpr', 'TPR.G37523' => 'tpr', 'TPR.G559' => 'tpr', 'TWI14G0070' => 'twi', 'TWI14G0729' => 'twi', 'TWI18G0596' => 'twi', 'TWI39G0780' => 'twi', 'TWI39G0850' => 'twi', 'TWI73G1052' => 'twi', 'unitig_52.g17485' => 'ugi', 'unitig_61.g26355' => 'ugi', 'vmacro01040' => 'vma', 'vmacro16731' => 'vma', 'vmacro18270' => 'vma', 'vmacro19142' => 'vma', 'vmacro19407' => 'vma', 'vmacro19408' => 'vma', 'vmacro21899' => 'vma', 'vmacro21900' => 'vma', 'vmacro21901' => 'vma', 'VMungo0251G0490' => 'vmu', 'VMungo0251G1748' => 'vmu', 'VMungo1309G0421' => 'vmu', 'Zm00001eb086500' => 'zma', 'Zm00001eb150680' => 'zma', 'Zm00001eb162330' => 'zma', 'Zm00001eb203130' => 'zma', 'Zm00001eb369480' => 'zma', 'Zm00001eb382340' => 'zma', 'Zm00001eb416360' => 'zma' ), 'gf_id' => 'HOM05D000902', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000902' ), 'data_identifier' => 'HOM05D000902', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000902', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '663', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02470' => 'bna', 'A01p16260' => 'bna', 'A02p01680' => 'bna', 'A03p16600' => 'bna', 'A03p55660' => 'bna', 'A03p64160' => 'bna', 'A03p64170' => 'bna', 'A08p31900' => 'bna', 'A09p59530' => 'bna', 'A10p08230' => 'bna', 'A10p25090' => 'bna', 'Aa31LG3G7100' => 'aar', 'Aa31LG3G7110' => 'aar', 'Aa31LG6G13160' => 'aar', 'Aa31LG7G10770' => 'aar', 'Aa31LG7G3830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2723' => 'aag', 'Actinidia08045' => 'ach', 'Actinidia08888' => 'ach', 'Actinidia18333' => 'ach', 'Actinidia19334' => 'ach', 'Actinidia25552' => 'ach', 'Actinidia26089' => 'ach', 'Actinidia30615' => 'ach', 'Actinidia30616' => 'ach', 'Actinidia33083' => 'ach', 'Actinidia35762' => 'ach', 'Ah.02g110620' => 'amhyb', 'Ah.11g046390' => 'amhyb', 'AL1G31670' => 'aly', 'AL6G23730' => 'aly', 'AL7G14740' => 'aly', 'AL7G14750' => 'aly', 'AL7G14760' => 'aly', 'AL7G28220' => 'aly', 'AL8G24940' => 'aly', 'Aqoxy3G01665' => 'aox', 'Aqoxy3G02853' => 'aox', 'Aqoxy5G01513' => 'aox', 'Aqoxy5G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8SKA4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ75LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKDA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0LJZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7REX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZP4YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWX7I5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2QKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS0L9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPCD8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q161UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC7XCF' => 'arhy', 'AT1G19100' => 'ath', 'AT4G24970' => 'ath', 'AT4G36270' => 'ath', 'AT4G36280' => 'ath', 'AT4G36290' => 'ath', 'AT5G13130' => 'ath', 'AT5G50780' => 'ath', 'ATR0582G266' => 'atr', 'ATR0661G195' => 'atr', 'ATR1152G031' => 'atr', 'Atru.chr11.2382' => 'acertr', 'Atru.chr12.2337' => 'acertr', 'Atru.chr3.744' => 'acertr', 'Atru.chr6.1870' => 'acertr', 'Atru.chr9.2515' => 'acertr', 'AUR62004120' => 'cqu', 'AUR62005667' => 'cqu', 'AUR62007634' => 'cqu', 'AUR62008186' => 'cqu', 'AUR62008187' => 'cqu', 'AUR62008188' => 'cqu', 'AUR62027954' => 'cqu', 'AUR62028766' => 'cqu', 'AUR62028767' => 'cqu', 'AUR62028768' => 'cqu', 'AUR62028886' => 'cqu', 'AUR62029563' => 'cqu', 'AUR62038832' => 'cqu', 'BcaB01g04149' => 'bca', 'BcaB03g12940' => 'bca', 'BcaB03g13090' => 'bca', 'BcaB03g14466' => 'bca', 'BcaB05g24035' => 'bca', 'BcaC01g06050' => 'bca', 'BcaC04g19148' => 'bca', 'BcaC04g20761' => 'bca', 'BcaC06g32845' => 'bca', 'BcaC07g41274' => 'bca', 'BcaC09g50827' => 'bca', 'BcaNung00741' => 'bca', 'BcaNung00742' => 'bca', 'BcaNung01859' => 'bca', 'BcaNung03985' => 'bca', 'BcaNung03989' => 'bca', 'BcaNung05661' => 'bca', 'BolC1t00257H' => 'bol', 'BolC1t01956H' => 'bol', 'BolC2t06534H' => 'bol', 'BolC3t14334H' => 'bol', 'BolC5t30451H' => 'bol', 'BolC7t45880H' => 'bol', 'BolC7t46586H' => 'bol', 'BolC8t49301H' => 'bol', 'BolC8t51837H' => 'bol', 'BolC9t56822H' => 'bol', 'BolC9t59235H' => 'bol', 'BraA01t00234Z' => 'bra', 'BraA01t01563Z' => 'bra', 'BraA02t05147Z' => 'bra', 'BraA03t10947Z' => 'bra', 'BraA03t14633Z' => 'bra', 'BraA08t35112Z' => 'bra', 'BraA09t41330Z' => 'bra', 'BraA10t44570Z' => 'bra', 'C01p02670' => 'bna', 'C01p20260' => 'bna', 'C02p05890' => 'bna', 'C03p19530' => 'bna', 'C05p17470' => 'bna', 'C07p53900' => 'bna', 'C07p61630' => 'bna', 'C08p16800' => 'bna', 'C08p42810' => 'bna', 'C09p39480' => 'bna', 'C09p63980' => 'bna', 'CAN.G1001.7' => 'can', 'CAN.G1034.55' => 'can', 'CAN.G143.7' => 'can', 'CAN.G3340.1' => 'can', 'CAN.G358.19' => 'can', 'CAN.G373.2' => 'can', 'CAN.G674.16' => 'can', 'CAN.G674.17' => 'can', 'CAN.G674.18' => 'can', 'CAN.G732.2' => 'can', 'CAN.G732.3' => 'can', 'CAN.G993.39' => 'can', 'CANSAT01G2052' => 'cansat', 'CANSAT80G0070' => 'cansat', 'CANSAT80G0483' => 'cansat', 'CANSAT80G0625' => 'cansat', 'CARHR019690' => 'chi', 'CARHR080280' => 'chi', 'CARHR152750' => 'chi', 'CARHR152760' => 'chi', 'CARHR152770' => 'chi', 'CARHR200340' => 'chi', 'CARHR232370' => 'chi', 'CARHR244670' => 'chi', 'CARHR244680' => 'chi', 'CARHR257520' => 'chi', 'Carub.0001s1872' => 'cru', 'Carub.0006s1130' => 'cru', 'Carub.0007s0396' => 'cru', 'Carub.0007s0397' => 'cru', 'Carub.0007s1608' => 'cru', 'Carub.0008s1068' => 'cru', 'Carub.0008s1077' => 'cru', 'Ca_16158_v3' => 'car', 'Ca_17571_v3' => 'car', 'Ca_21936_v3' => 'car', 'Ca_22350_v3' => 'car', 'CBR_g22445' => 'cbr', 'CBR_g26290' => 'cbr', 'Cc04_g09610' => 'ccan', 'Cc04_g12280' => 'ccan', 'Cc07_g10230' => 'ccan', 'CDE02G0093' => 'cde', 'CDE02G0701' => 'cde', 'CDE04G1050' => 'cde', 'CDE05G1833' => 'cde', 'CDE05G3058' => 'cde', 'CDE05G3380' => 'cde', 'CDE06G0536' => 'cde', 'Cfa006923' => 'cfa', 'Cfa009402' => 'cfa', 'Cfa018751' => 'cfa', 'Cfa019164' => 'cfa', 'Cfa022935' => 'cfa', 'Ciclev10019081m.g' => 'ccl', 'Ciclev10025076m.g' => 'ccl', 'Ciclev10030712m.g' => 'ccl', 'Ciclev10033760m.g' => 'ccl', 'CiPaw.05G105600' => 'cil', 'CiPaw.08G136700' => 'cil', 'CiPaw.11G003900' => 'cil', 'CiPaw.11G023700' => 'cil', 'CiPaw.12G003700' => 'cil', 'ClCG06G017100' => 'cla', 'ClCG06G018110' => 'cla', 'ClCG07G008800' => 'cla', 'ClCG07G015330' => 'cla', 'COL.COLO4_13698' => 'col', 'COL.COLO4_16659' => 'col', 'COL.COLO4_21986' => 'col', 'COL.COLO4_24049' => 'col', 'COL.COLO4_29061' => 'col', 'COL.COLO4_29075' => 'col', 'COL.COLO4_30094' => 'col', 'Cpa.g.c33689' => 'cpa', 'Cpa.g.sc108.39' => 'cpa', 'Cpa.g.sc108.41' => 'cpa', 'Cpa.g.sc1163.1' => 'cpa', 'Cpa.g.sc4.155' => 'cpa', 'Cpa.g.sc6.194' => 'cpa', 'CsaV3_1G000340' => 'csa', 'CsaV3_1G001400' => 'csa', 'CsaV3_4G002220' => 'csa', 'CsaV3_4G005370' => 'csa', 'CSS0007487' => 'camsi', 'CSS0008066' => 'camsi', 'CSS0009120' => 'camsi', 'CSS0015512' => 'camsi', 'CSS0022409' => 'camsi', 'CSS0025358' => 'camsi', 'CSS0044547' => 'camsi', 'DCAR_013057' => 'dca', 'DCAR_015058' => 'dca', 'DCAR_016027' => 'dca', 'DCAR_017327' => 'dca', 'DCAR_020743' => 'dca', 'DCAR_026157' => 'dca', 'DCAR_032339' => 'dca', 'DCAR_032340' => 'dca', 'Dinv11200' => 'din', 'Dinv11201' => 'din', 'Dinv20631' => 'din', 'Dinv23182' => 'din', 'Dinv33466' => 'din', 'Dinv33583' => 'din', 'Dinv38565' => 'din', 'Duzib068G0200' => 'dzi', 'Duzib147G0132' => 'dzi', 'Duzib147G0635' => 'dzi', 'Duzib205G1670' => 'dzi', 'Duzib251G0606' => 'dzi', 'ECA232G3336' => 'eca', 'ECA232G3763' => 'eca', 'ECA232G4845' => 'eca', 'ECA234G1607' => 'eca', 'ECA246G0932' => 'eca', 'ECA247G0781' => 'eca', 'ECA247G1932' => 'eca', 'ECA247G2079' => 'eca', 'ECA247G3338' => 'eca', 'ECA247G4115' => 'eca', 'EL10Ac3g06552' => 'bvu', 'EL10Ac5g10721' => 'bvu', 'EL10Ac5g10722' => 'bvu', 'EL10Ac5g10723' => 'bvu', 'EL10Ac5g11361' => 'bvu', 'EL10Ac6g13553' => 'bvu', 'EL10As8g23872' => 'bvu', 'Eucgr.B00250' => 'egr', 'Eucgr.B00251' => 'egr', 'Eucgr.B03533' => 'egr', 'Eucgr.I02381' => 'egr', 'Eucgr.K02700' => 'egr', 'FAN02G0174' => 'fan', 'FAN02G3146' => 'fan', 'FAN04G1672' => 'fan', 'FAN04G2273' => 'fan', 'FAN05G2791' => 'fan', 'FAN05G4035' => 'fan', 'FAN07G0834' => 'fan', 'FAN08G1198' => 'fan', 'FAN09G4182' => 'fan', 'FAN12G0496' => 'fan', 'FAN13G1027' => 'fan', 'FAN13G2951' => 'fan', 'FAN14G0705' => 'fan', 'FAN14G0720' => 'fan', 'FAN17G0201' => 'fan', 'FAN17G2665' => 'fan', 'FAN18G1456' => 'fan', 'FAN18G1525' => 'fan', 'FAN18G3500' => 'fan', 'FAN28G2670' => 'fan', 'FvH4_1g12391' => 'fve', 'FvH4_4g23220' => 'fve', 'FvH4_5g08810' => 'fve', 'FvH4_5g28960' => 'fve', 'FvH4_6g42820' => 'fve', 'FvH4_6g51110' => 'fve', 'Glyma.02G051802' => 'gma', 'Glyma.04G185300' => 'gma', 'Glyma.05G202900' => 'gma', 'Glyma.08G010300' => 'gma', 'Glyma.16G131900' => 'gma', 'Glyma.17G087900' => 'gma', 'Gohir.A07G048600' => 'ghi', 'Gohir.A11G179000' => 'ghi', 'Gohir.A12G140900' => 'ghi', 'Gohir.A12G140950' => 'ghi', 'Gohir.A12G191700' => 'ghi', 'Gohir.A13G086300' => 'ghi', 'Gohir.D07G052900' => 'ghi', 'Gohir.D11G186600' => 'ghi', 'Gohir.D12G145575' => 'ghi', 'Gohir.D12G145650' => 'ghi', 'Gohir.D12G145725' => 'ghi', 'Gohir.D12G194050' => 'ghi', 'Gohir.D13G091800' => 'ghi', 'Gorai.001G055900' => 'gra', 'Gorai.007G198400' => 'gra', 'Gorai.008G157000' => 'gra', 'Gorai.008G157100' => 'gra', 'Gorai.008G208700' => 'gra', 'Gorai.010G138700' => 'gra', 'GSVIVG01000977001' => 'vvi', 'GSVIVG01007708001' => 'vvi', 'GSVIVG01008587001' => 'vvi', 'GSVIVG01018849001' => 'vvi', 'GSVIVG01032432001' => 'vvi', 'HanXRQChr02g0034131' => 'han', 'HanXRQChr02g0035981' => 'han', 'HanXRQChr02g0035991' => 'han', 'HanXRQChr05g0155611' => 'han', 'HanXRQChr05g0155621' => 'han', 'HanXRQChr08g0236501' => 'han', 'HanXRQChr09g0261321' => 'han', 'HanXRQChr09g0272081' => 'han', 'HanXRQChr10g0310741' => 'han', 'HanXRQChr11g0325591' => 'han', 'HanXRQChr12g0385691' => 'han', 'HanXRQChr13g0387801' => 'han', 'HanXRQChr15g0463011' => 'han', 'Haze_03826' => 'cav', 'Haze_03827' => 'cav', 'Haze_07183' => 'cav', 'Haze_07537' => 'cav', 'Haze_07539' => 'cav', 'Haze_12461' => 'cav', 'Haze_16115' => 'cav', 'Haze_16808' => 'cav', 'Haze_18531' => 'cav', 'Hma1.2p1_0046F.1_g026700' => 'hma', 'Hma1.2p1_0046F.1_g026710' => 'hma', 'Hma1.2p1_0168F.1_g074340' => 'hma', 'Hma1.2p1_0266F.1_g107030' => 'hma', 'Hma1.2p1_0266F.1_g107060' => 'hma', 'Hma1.2p1_0275F.1_g110510' => 'hma', 'Hma1.2p1_0592F.1_g185490' => 'hma', 'Hma1.2p1_0592F.1_g185500' => 'hma', 'Hma1.2p1_0592F.1_g185510' => 'hma', 'Hma1.2p1_0592F.1_g185520' => 'hma', 'Hma1.2p1_0592F.1_g185530' => 'hma', 'Hma1.2p1_0818F.1_g223450' => 'hma', 'HPP92_009708' => 'vpl', 'HPP92_009793' => 'vpl', 'HPP92_009796' => 'vpl', 'HPP92_009797' => 'vpl', 'HPP92_014940' => 'vpl', 'HPP92_014988' => 'vpl', 'Hund02463' => 'sun', 'Hund02760' => 'sun', 'Hund05071' => 'sun', 'Hund10108' => 'sun', 'Hund11204' => 'sun', 'Hund14016' => 'sun', 'Hund16464' => 'sun', 'Lalb_Chr09g0333391' => 'lal', 'Lalb_Chr11g0070461' => 'lal', 'Lalb_Chr12g0201671' => 'lal', 'Lalb_Chr13g0297161' => 'lal', 'Lj1g0002823' => 'lja', 'Lj3C1074T6' => 'lonja', 'Lj4A212T28' => 'lonja', 'Lj4g0005516' => 'lja', 'Lj4g0013705' => 'lja', 'Lj4g0027865' => 'lja', 'Lj5C92G16' => 'lonja', 'Lj5C92T12' => 'lonja', 'Lj7C596T3' => 'lonja', 'Lj9A446G59' => 'lonja', 'Lj9A482G21' => 'lonja', 'Lsat_1_v5_gn_1_28261' => 'lsa', 'Lsat_1_v5_gn_1_28281' => 'lsa', 'Lsat_1_v5_gn_1_32721' => 'lsa', 'Lsat_1_v5_gn_4_151760' => 'lsa', 'Lsat_1_v5_gn_4_2120' => 'lsa', 'Lsat_1_v5_gn_4_75761' => 'lsa', 'Lsat_1_v5_gn_5_10920' => 'lsa', 'Manes.02G099900' => 'mes', 'Manes.11G096200' => 'mes', 'Manes.12G007200' => 'mes', 'Manes.14G048300' => 'mes', 'Manes.17G114700' => 'mes', 'Mapoly0002s0070' => 'mpo', 'Mapoly0029s0099' => 'mpo', 'MBI07_g24742_MAGBIO' => 'mbi', 'MBI10_g27988_MAGBIO' => 'mbi', 'MBI11_g13057_MAGBIO' => 'mbi', 'MD02G1137200' => 'mdo', 'MD06G1137200' => 'mdo', 'MD07G1122300' => 'mdo', 'MD09G1078200' => 'mdo', 'MD13G1123700' => 'mdo', 'MD14G1151900' => 'mdo', 'MD17G1030900' => 'mdo', 'MD17G1068200' => 'mdo', 'MD17G1068600' => 'mdo', 'Medtr3g077540' => 'mtr', 'Medtr4g105530' => 'mtr', 'Medtr8g076580' => 'mtr', 'Medtr8g076590' => 'mtr', 'Medtr8g096410' => 'mtr', 'MELO3C016411.2' => 'cme', 'MELO3C017780.2' => 'cme', 'MELO3C022560.2' => 'cme', 'MELO3C026187.2' => 'cme', 'MELO3C026286.2' => 'cme', 'MELO3C032854.2' => 'cme', 'Migut.H02495' => 'egut', 'Migut.I00561' => 'egut', 'Migut.K01015' => 'egut', 'Migut.K01016' => 'egut', 'Migut.L00743' => 'egut', 'Migut.L00744' => 'egut', 'Migut.L00746' => 'egut', 'Migut.L00798' => 'egut', 'Migut.L00799' => 'egut', 'Migut.N02096' => 'egut', 'MSTRG.11259' => 'ama', 'MSTRG.23142' => 'ama', 'MSTRG.2499' => 'ama', 'Nitab4.5_0000003g0730' => 'nta', 'Nitab4.5_0000137g0020' => 'nta', 'Nitab4.5_0000721g0210' => 'nta', 'Nitab4.5_0000723g0050' => 'nta', 'Nitab4.5_0000913g0070' => 'nta', 'Nitab4.5_0001332g0040' => 'nta', 'Nitab4.5_0001771g0050' => 'nta', 'Nitab4.5_0001918g0050' => 'nta', 'Nitab4.5_0002686g0030' => 'nta', 'Nitab4.5_0003156g0020' => 'nta', 'Nitab4.5_0003383g0040' => 'nta', 'Nitab4.5_0003918g0010' => 'nta', 'Nitab4.5_0006760g0010' => 'nta', 'Nn1g05981' => 'nnu', 'Nn1g06288' => 'nnu', 'Nn3g16371' => 'nnu', 'Nn3g16786' => 'nnu', 'Nn4g22232' => 'nnu', 'Oeu005144.1' => 'oeu', 'Oeu005145.1' => 'oeu', 'Oeu011348.1' => 'oeu', 'Oeu016415.1' => 'oeu', 'Oeu023501.1' => 'oeu', 'Oeu044473.1' => 'oeu', 'Oeu048892.2' => 'oeu', 'Os01g0549200' => 'osa', 'Os02g0469300' => 'osa', 'Os04g0311100' => 'osa', 'Os06g0474900' => 'osa', 'Os10g0181700' => 'osa', 'Os11g0454800' => 'osa', 'Peaxi162Scf00037g00714' => 'pax', 'Peaxi162Scf00084g01217' => 'pax', 'Peaxi162Scf00257g00217' => 'pax', 'Peaxi162Scf00516g00215' => 'pax', 'Peaxi162Scf00689g00123' => 'pax', 'PGR044G2719' => 'pgr', 'PGR083G1360' => 'pgr', 'PGR102G2849' => 'pgr', 'PGR119G2534' => 'pgr', 'PGSC0003DMG400003538' => 'stu', 'PGSC0003DMG400028138' => 'stu', 'PGSC0003DMG400031732' => 'stu', 'PGSC0003DMG400038165' => 'stu', 'Phvul.002G284600' => 'pvu', 'Phvul.003G258200' => 'pvu', 'Phvul.009G176500' => 'pvu', 'Potri.003G167201' => 'ptr', 'Potri.005G118400' => 'ptr', 'Potri.012G089000' => 'ptr', 'Potri.012G102800' => 'ptr', 'Potri.015G079400' => 'ptr', 'Potri.015G100900' => 'ptr', 'Pp3c14_9810' => 'ppa', 'Pp3c15_10450' => 'ppa', 'Pp3c20_19150' => 'ppa', 'Pp3c23_12740' => 'ppa', 'Pp3c23_6310' => 'ppa', 'Pp3c24_3720' => 'ppa', 'Pp3c27_2580' => 'ppa', 'Pp3c9_8990' => 'ppa', 'PRCOL_00002854' => 'pco', 'Prupe.1G221200' => 'ppe', 'Prupe.3G289000' => 'ppe', 'Prupe.5G147000' => 'ppe', 'Prupe.6G157300' => 'ppe', 'Prupe.7G163400' => 'ppe', 'Psat0s2177g0040' => 'psa', 'Psat3g174760' => 'psa', 'Psat3g192160' => 'psa', 'Psat4g058520' => 'psa', 'Psat4g096840' => 'psa', 'Psat7g037320' => 'psa', 'PSO017G1274' => 'pso', 'PSO017G5166' => 'pso', 'PSO063G4558' => 'pso', 'PSO170G4458' => 'pso', 'PSO170G5005' => 'pso', 'PSO210G6156' => 'pso', 'PSO210G6635' => 'pso', 'PSO210G7397' => 'pso', 'PSO210G7700' => 'pso', 'PSO455G0035' => 'pso', 'PSO455G0180' => 'pso', 'PSO478G4515' => 'pso', 'PSO832G1305' => 'pso', 'PSO832G3489' => 'pso', 'QL02p075247' => 'qlo', 'QL03p051148' => 'qlo', 'QL05p010313' => 'qlo', 'QL06p034627' => 'qlo', 'QL10p001889' => 'qlo', 'QL10p010846' => 'qlo', 'RcHm_v2.0_Chr1g0350621' => 'rch', 'RcHm_v2.0_Chr1g0350641' => 'rch', 'RcHm_v2.0_Chr2g0092891' => 'rch', 'RcHm_v2.0_Chr2g0100251' => 'rch', 'RcHm_v2.0_Chr2g0158661' => 'rch', 'RcHm_v2.0_Chr2g0172741' => 'rch', 'RcHm_v2.0_Chr4g0429571' => 'rch', 'RcHm_v2.0_Chr5g0042471' => 'rch', 'RcHm_v2.0_Chr7g0189451' => 'rch', 'Rhsim08G0052000' => 'rsi', 'Rhsim08G0174400' => 'rsi', 'Rhsim08G0193200' => 'rsi', 'Rhsim10G0214800' => 'rsi', 'Rhsim10G0214900' => 'rsi', 'Rhsim10G0215000' => 'rsi', 'Rhsim12G0022900' => 'rsi', 'Rhsim12G0177500' => 'rsi', 'Rhsim12G0177700' => 'rsi', 'Sabra03G0122600' => 'sbr', 'Sabra05G0097400' => 'sbr', 'Sabra12G0064100' => 'sbr', 'Sabra15G0121300' => 'sbr', 'SalBow2G0642' => 'sbo', 'SalBow5G2667' => 'sbo', 'SalBow5G4873' => 'sbo', 'SalBow8G2395' => 'sbo', 'Sc03g0003290' => 'sci', 'Sc10g0010130' => 'sci', 'Sc22g0003650' => 'sci', 'Sed0001603' => 'sed', 'Sed0004259' => 'sed', 'Sed0006789' => 'sed', 'Sed0011838' => 'sed', 'Sed0012964' => 'sed', 'Sed0016383' => 'sed', 'Sed0019010' => 'sed', 'Sed0020188' => 'sed', 'SEGI_04702' => 'sgi', 'SEGI_17231' => 'sgi', 'SEGI_18877' => 'sgi', 'SEGI_25196' => 'sgi', 'SEGI_25515' => 'sgi', 'SEGI_28445' => 'sgi', 'SEGI_37452' => 'sgi', 'SGA_v2.0_scaffold188G40336' => 'sas', 'SGA_v2.0_scaffold228G43247' => 'sas', 'SGA_v2.0_scaffold280G46853' => 'sas', 'SGA_v2.0_scaffold34G13808' => 'sas', 'SGA_v2.0_scaffold40G15576' => 'sas', 'SGA_v2.0_scaffold611G53188' => 'sas', 'SGA_v2.0_scaffold78G25461' => 'sas', 'SGA_v2.0_scaffold90G27888' => 'sas', 'SHI08601' => 'shi', 'SHI08606' => 'shi', 'SHI17117' => 'shi', 'SHI17119' => 'shi', 'SMO118G0201' => 'smo', 'SMO169G0247' => 'smo', 'SMO176G0006' => 'smo', 'SMO176G0015' => 'smo', 'SMO202G0006' => 'smo', 'SMO240G0050' => 'smo', 'SMO286G0009' => 'smo', 'SMO338G0033' => 'smo', 'SMO356G0533' => 'smo', 'SMO364G0382' => 'smo', 'SMO367G0166' => 'smo', 'SMO367G1098' => 'smo', 'Solyc01g009920.3' => 'sly', 'Solyc01g099300.3' => 'sly', 'Solyc02g084700.3' => 'sly', 'Solyc03g097520.3' => 'sly', 'Solyc06g071580.3' => 'sly', 'Solyc10g081760.3' => 'sly', 'Sopen01g005480' => 'spe', 'Sopen01g042850' => 'spe', 'Sopen02g029370' => 'spe', 'Sopen03g028280' => 'spe', 'Sopen06g027870' => 'spe', 'Sopen10g032270' => 'spe', 'Sp5g18180' => 'spa', 'Sp6g12880' => 'spa', 'Sp6g30850' => 'spa', 'Sp7g22960' => 'spa', 'Sp7g34010' => 'spa', 'SpUn1326_0010' => 'spa', 'TAR371G0242' => 'tar', 'TAR622G0638' => 'tar', 'TAR628G1548' => 'tar', 'TAR629G1079' => 'tar', 'TAR629G3413' => 'tar', 'THA.LOC104804249' => 'tha', 'THA.LOC104808315' => 'tha', 'THA.LOC104809238' => 'tha', 'THA.LOC104825484' => 'tha', 'Thecc.01G025500' => 'tca', 'Thecc.03G015800' => 'tca', 'Thecc.03G018000' => 'tca', 'Thecc.03G134800' => 'tca', 'Thecc.04G014700' => 'tca', 'Thhalv10006991m.g' => 'esa', 'Thhalv10012707m.g' => 'esa', 'Thhalv10015739m.g' => 'esa', 'Thhalv10024553m.g' => 'esa', 'Thhalv10024673m.g' => 'esa', 'Thhalv10029187m.g' => 'esa', 'TPR.G12971' => 'tpr', 'TPR.G29396' => 'tpr', 'TPR.G33376' => 'tpr', 'TPR.G35508' => 'tpr', 'TPR.G35516' => 'tpr', 'TPR.G37317' => 'tpr', 'TPR.G37389' => 'tpr', 'TPR.G37523' => 'tpr', 'TPR.G559' => 'tpr', 'TWI14G0070' => 'twi', 'TWI14G0729' => 'twi', 'TWI18G0596' => 'twi', 'TWI39G0780' => 'twi', 'TWI39G0850' => 'twi', 'TWI73G1052' => 'twi', 'unitig_52.g17485' => 'ugi', 'unitig_61.g26355' => 'ugi', 'vmacro01040' => 'vma', 'vmacro16731' => 'vma', 'vmacro18270' => 'vma', 'vmacro19142' => 'vma', 'vmacro19407' => 'vma', 'vmacro19408' => 'vma', 'vmacro21899' => 'vma', 'vmacro21900' => 'vma', 'vmacro21901' => 'vma', 'VMungo0251G0490' => 'vmu', 'VMungo0251G1748' => 'vmu', 'VMungo1309G0421' => 'vmu', 'Zm00001eb086500' => 'zma', 'Zm00001eb150680' => 'zma', 'Zm00001eb162330' => 'zma', 'Zm00001eb203130' => 'zma', 'Zm00001eb369480' => 'zma', 'Zm00001eb382340' => 'zma', 'Zm00001eb416360' => 'zma' ) $gf_id = 'HOM05D000902' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000902' ) $data_identifier = 'HOM05D000902' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 13, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 10, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 6, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 9, 'hma' => (int) 12, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 4, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 6, 'ppa' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 6, 'rch' => (int) 9, 'rsi' => (int) 9, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 12, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 3, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416360' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000902', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '663', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02470' => 'bna', 'A01p16260' => 'bna', 'A02p01680' => 'bna', 'A03p16600' => 'bna', 'A03p55660' => 'bna', 'A03p64160' => 'bna', 'A03p64170' => 'bna', 'A08p31900' => 'bna', 'A09p59530' => 'bna', 'A10p08230' => 'bna', 'A10p25090' => 'bna', 'Aa31LG3G7100' => 'aar', 'Aa31LG3G7110' => 'aar', 'Aa31LG6G13160' => 'aar', 'Aa31LG7G10770' => 'aar', 'Aa31LG7G3830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2723' => 'aag', 'Actinidia08045' => 'ach', 'Actinidia08888' => 'ach', 'Actinidia18333' => 'ach', 'Actinidia19334' => 'ach', 'Actinidia25552' => 'ach', 'Actinidia26089' => 'ach', 'Actinidia30615' => 'ach', 'Actinidia30616' => 'ach', 'Actinidia33083' => 'ach', 'Actinidia35762' => 'ach', 'Ah.02g110620' => 'amhyb', 'Ah.11g046390' => 'amhyb', 'AL1G31670' => 'aly', 'AL6G23730' => 'aly', 'AL7G14740' => 'aly', 'AL7G14750' => 'aly', 'AL7G14760' => 'aly', 'AL7G28220' => 'aly', 'AL8G24940' => 'aly', 'Aqoxy3G01665' => 'aox', 'Aqoxy3G02853' => 'aox', 'Aqoxy5G01513' => 'aox', 'Aqoxy5G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8SKA4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ75LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKDA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0LJZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7REX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZP4YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWX7I5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2QKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS0L9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPCD8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q161UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC7XCF' => 'arhy', 'AT1G19100' => 'ath', 'AT4G24970' => 'ath', 'AT4G36270' => 'ath', 'AT4G36280' => 'ath', 'AT4G36290' => 'ath', 'AT5G13130' => 'ath', 'AT5G50780' => 'ath', 'ATR0582G266' => 'atr', 'ATR0661G195' => 'atr', 'ATR1152G031' => 'atr', 'Atru.chr11.2382' => 'acertr', 'Atru.chr12.2337' => 'acertr', 'Atru.chr3.744' => 'acertr', 'Atru.chr6.1870' => 'acertr', 'Atru.chr9.2515' => 'acertr', 'AUR62004120' => 'cqu', 'AUR62005667' => 'cqu', 'AUR62007634' => 'cqu', 'AUR62008186' => 'cqu', 'AUR62008187' => 'cqu', 'AUR62008188' => 'cqu', 'AUR62027954' => 'cqu', 'AUR62028766' => 'cqu', 'AUR62028767' => 'cqu', 'AUR62028768' => 'cqu', 'AUR62028886' => 'cqu', 'AUR62029563' => 'cqu', 'AUR62038832' => 'cqu', 'BcaB01g04149' => 'bca', 'BcaB03g12940' => 'bca', 'BcaB03g13090' => 'bca', 'BcaB03g14466' => 'bca', 'BcaB05g24035' => 'bca', 'BcaC01g06050' => 'bca', 'BcaC04g19148' => 'bca', 'BcaC04g20761' => 'bca', 'BcaC06g32845' => 'bca', 'BcaC07g41274' => 'bca', 'BcaC09g50827' => 'bca', 'BcaNung00741' => 'bca', 'BcaNung00742' => 'bca', 'BcaNung01859' => 'bca', 'BcaNung03985' => 'bca', 'BcaNung03989' => 'bca', 'BcaNung05661' => 'bca', 'BolC1t00257H' => 'bol', 'BolC1t01956H' => 'bol', 'BolC2t06534H' => 'bol', 'BolC3t14334H' => 'bol', 'BolC5t30451H' => 'bol', 'BolC7t45880H' => 'bol', 'BolC7t46586H' => 'bol', 'BolC8t49301H' => 'bol', 'BolC8t51837H' => 'bol', 'BolC9t56822H' => 'bol', 'BolC9t59235H' => 'bol', 'BraA01t00234Z' => 'bra', 'BraA01t01563Z' => 'bra', 'BraA02t05147Z' => 'bra', 'BraA03t10947Z' => 'bra', 'BraA03t14633Z' => 'bra', 'BraA08t35112Z' => 'bra', 'BraA09t41330Z' => 'bra', 'BraA10t44570Z' => 'bra', 'C01p02670' => 'bna', 'C01p20260' => 'bna', 'C02p05890' => 'bna', 'C03p19530' => 'bna', 'C05p17470' => 'bna', 'C07p53900' => 'bna', 'C07p61630' => 'bna', 'C08p16800' => 'bna', 'C08p42810' => 'bna', 'C09p39480' => 'bna', 'C09p63980' => 'bna', 'CAN.G1001.7' => 'can', 'CAN.G1034.55' => 'can', 'CAN.G143.7' => 'can', 'CAN.G3340.1' => 'can', 'CAN.G358.19' => 'can', 'CAN.G373.2' => 'can', 'CAN.G674.16' => 'can', 'CAN.G674.17' => 'can', 'CAN.G674.18' => 'can', 'CAN.G732.2' => 'can', 'CAN.G732.3' => 'can', 'CAN.G993.39' => 'can', 'CANSAT01G2052' => 'cansat', 'CANSAT80G0070' => 'cansat', 'CANSAT80G0483' => 'cansat', 'CANSAT80G0625' => 'cansat', 'CARHR019690' => 'chi', 'CARHR080280' => 'chi', 'CARHR152750' => 'chi', 'CARHR152760' => 'chi', 'CARHR152770' => 'chi', 'CARHR200340' => 'chi', 'CARHR232370' => 'chi', 'CARHR244670' => 'chi', 'CARHR244680' => 'chi', 'CARHR257520' => 'chi', 'Carub.0001s1872' => 'cru', 'Carub.0006s1130' => 'cru', 'Carub.0007s0396' => 'cru', 'Carub.0007s0397' => 'cru', 'Carub.0007s1608' => 'cru', 'Carub.0008s1068' => 'cru', 'Carub.0008s1077' => 'cru', 'Ca_16158_v3' => 'car', 'Ca_17571_v3' => 'car', 'Ca_21936_v3' => 'car', 'Ca_22350_v3' => 'car', 'CBR_g22445' => 'cbr', 'CBR_g26290' => 'cbr', 'Cc04_g09610' => 'ccan', 'Cc04_g12280' => 'ccan', 'Cc07_g10230' => 'ccan', 'CDE02G0093' => 'cde', 'CDE02G0701' => 'cde', 'CDE04G1050' => 'cde', 'CDE05G1833' => 'cde', 'CDE05G3058' => 'cde', 'CDE05G3380' => 'cde', 'CDE06G0536' => 'cde', 'Cfa006923' => 'cfa', 'Cfa009402' => 'cfa', 'Cfa018751' => 'cfa', 'Cfa019164' => 'cfa', 'Cfa022935' => 'cfa', 'Ciclev10019081m.g' => 'ccl', 'Ciclev10025076m.g' => 'ccl', 'Ciclev10030712m.g' => 'ccl', 'Ciclev10033760m.g' => 'ccl', 'CiPaw.05G105600' => 'cil', 'CiPaw.08G136700' => 'cil', 'CiPaw.11G003900' => 'cil', 'CiPaw.11G023700' => 'cil', 'CiPaw.12G003700' => 'cil', 'ClCG06G017100' => 'cla', 'ClCG06G018110' => 'cla', 'ClCG07G008800' => 'cla', 'ClCG07G015330' => 'cla', 'COL.COLO4_13698' => 'col', 'COL.COLO4_16659' => 'col', 'COL.COLO4_21986' => 'col', 'COL.COLO4_24049' => 'col', 'COL.COLO4_29061' => 'col', 'COL.COLO4_29075' => 'col', 'COL.COLO4_30094' => 'col', 'Cpa.g.c33689' => 'cpa', 'Cpa.g.sc108.39' => 'cpa', 'Cpa.g.sc108.41' => 'cpa', 'Cpa.g.sc1163.1' => 'cpa', 'Cpa.g.sc4.155' => 'cpa', 'Cpa.g.sc6.194' => 'cpa', 'CsaV3_1G000340' => 'csa', 'CsaV3_1G001400' => 'csa', 'CsaV3_4G002220' => 'csa', 'CsaV3_4G005370' => 'csa', 'CSS0007487' => 'camsi', 'CSS0008066' => 'camsi', 'CSS0009120' => 'camsi', 'CSS0015512' => 'camsi', 'CSS0022409' => 'camsi', 'CSS0025358' => 'camsi', 'CSS0044547' => 'camsi', 'DCAR_013057' => 'dca', 'DCAR_015058' => 'dca', 'DCAR_016027' => 'dca', 'DCAR_017327' => 'dca', 'DCAR_020743' => 'dca', 'DCAR_026157' => 'dca', 'DCAR_032339' => 'dca', 'DCAR_032340' => 'dca', 'Dinv11200' => 'din', 'Dinv11201' => 'din', 'Dinv20631' => 'din', 'Dinv23182' => 'din', 'Dinv33466' => 'din', 'Dinv33583' => 'din', 'Dinv38565' => 'din', 'Duzib068G0200' => 'dzi', 'Duzib147G0132' => 'dzi', 'Duzib147G0635' => 'dzi', 'Duzib205G1670' => 'dzi', 'Duzib251G0606' => 'dzi', 'ECA232G3336' => 'eca', 'ECA232G3763' => 'eca', 'ECA232G4845' => 'eca', 'ECA234G1607' => 'eca', 'ECA246G0932' => 'eca', 'ECA247G0781' => 'eca', 'ECA247G1932' => 'eca', 'ECA247G2079' => 'eca', 'ECA247G3338' => 'eca', 'ECA247G4115' => 'eca', 'EL10Ac3g06552' => 'bvu', 'EL10Ac5g10721' => 'bvu', 'EL10Ac5g10722' => 'bvu', 'EL10Ac5g10723' => 'bvu', 'EL10Ac5g11361' => 'bvu', 'EL10Ac6g13553' => 'bvu', 'EL10As8g23872' => 'bvu', 'Eucgr.B00250' => 'egr', 'Eucgr.B00251' => 'egr', 'Eucgr.B03533' => 'egr', 'Eucgr.I02381' => 'egr', 'Eucgr.K02700' => 'egr', 'FAN02G0174' => 'fan', 'FAN02G3146' => 'fan', 'FAN04G1672' => 'fan', 'FAN04G2273' => 'fan', 'FAN05G2791' => 'fan', 'FAN05G4035' => 'fan', 'FAN07G0834' => 'fan', 'FAN08G1198' => 'fan', 'FAN09G4182' => 'fan', 'FAN12G0496' => 'fan', 'FAN13G1027' => 'fan', 'FAN13G2951' => 'fan', 'FAN14G0705' => 'fan', 'FAN14G0720' => 'fan', 'FAN17G0201' => 'fan', 'FAN17G2665' => 'fan', 'FAN18G1456' => 'fan', 'FAN18G1525' => 'fan', 'FAN18G3500' => 'fan', 'FAN28G2670' => 'fan', 'FvH4_1g12391' => 'fve', 'FvH4_4g23220' => 'fve', 'FvH4_5g08810' => 'fve', 'FvH4_5g28960' => 'fve', 'FvH4_6g42820' => 'fve', 'FvH4_6g51110' => 'fve', 'Glyma.02G051802' => 'gma', 'Glyma.04G185300' => 'gma', 'Glyma.05G202900' => 'gma', 'Glyma.08G010300' => 'gma', 'Glyma.16G131900' => 'gma', 'Glyma.17G087900' => 'gma', 'Gohir.A07G048600' => 'ghi', 'Gohir.A11G179000' => 'ghi', 'Gohir.A12G140900' => 'ghi', 'Gohir.A12G140950' => 'ghi', 'Gohir.A12G191700' => 'ghi', 'Gohir.A13G086300' => 'ghi', 'Gohir.D07G052900' => 'ghi', 'Gohir.D11G186600' => 'ghi', 'Gohir.D12G145575' => 'ghi', 'Gohir.D12G145650' => 'ghi', 'Gohir.D12G145725' => 'ghi', 'Gohir.D12G194050' => 'ghi', 'Gohir.D13G091800' => 'ghi', 'Gorai.001G055900' => 'gra', 'Gorai.007G198400' => 'gra', 'Gorai.008G157000' => 'gra', 'Gorai.008G157100' => 'gra', 'Gorai.008G208700' => 'gra', 'Gorai.010G138700' => 'gra', 'GSVIVG01000977001' => 'vvi', 'GSVIVG01007708001' => 'vvi', 'GSVIVG01008587001' => 'vvi', 'GSVIVG01018849001' => 'vvi', 'GSVIVG01032432001' => 'vvi', 'HanXRQChr02g0034131' => 'han', 'HanXRQChr02g0035981' => 'han', 'HanXRQChr02g0035991' => 'han', 'HanXRQChr05g0155611' => 'han', 'HanXRQChr05g0155621' => 'han', 'HanXRQChr08g0236501' => 'han', 'HanXRQChr09g0261321' => 'han', 'HanXRQChr09g0272081' => 'han', 'HanXRQChr10g0310741' => 'han', 'HanXRQChr11g0325591' => 'han', 'HanXRQChr12g0385691' => 'han', 'HanXRQChr13g0387801' => 'han', 'HanXRQChr15g0463011' => 'han', 'Haze_03826' => 'cav', 'Haze_03827' => 'cav', 'Haze_07183' => 'cav', 'Haze_07537' => 'cav', 'Haze_07539' => 'cav', 'Haze_12461' => 'cav', 'Haze_16115' => 'cav', 'Haze_16808' => 'cav', 'Haze_18531' => 'cav', 'Hma1.2p1_0046F.1_g026700' => 'hma', 'Hma1.2p1_0046F.1_g026710' => 'hma', 'Hma1.2p1_0168F.1_g074340' => 'hma', 'Hma1.2p1_0266F.1_g107030' => 'hma', 'Hma1.2p1_0266F.1_g107060' => 'hma', 'Hma1.2p1_0275F.1_g110510' => 'hma', 'Hma1.2p1_0592F.1_g185490' => 'hma', 'Hma1.2p1_0592F.1_g185500' => 'hma', 'Hma1.2p1_0592F.1_g185510' => 'hma', 'Hma1.2p1_0592F.1_g185520' => 'hma', 'Hma1.2p1_0592F.1_g185530' => 'hma', 'Hma1.2p1_0818F.1_g223450' => 'hma', 'HPP92_009708' => 'vpl', 'HPP92_009793' => 'vpl', 'HPP92_009796' => 'vpl', 'HPP92_009797' => 'vpl', 'HPP92_014940' => 'vpl', 'HPP92_014988' => 'vpl', 'Hund02463' => 'sun', 'Hund02760' => 'sun', 'Hund05071' => 'sun', 'Hund10108' => 'sun', 'Hund11204' => 'sun', 'Hund14016' => 'sun', 'Hund16464' => 'sun', 'Lalb_Chr09g0333391' => 'lal', 'Lalb_Chr11g0070461' => 'lal', 'Lalb_Chr12g0201671' => 'lal', 'Lalb_Chr13g0297161' => 'lal', 'Lj1g0002823' => 'lja', 'Lj3C1074T6' => 'lonja', 'Lj4A212T28' => 'lonja', 'Lj4g0005516' => 'lja', 'Lj4g0013705' => 'lja', 'Lj4g0027865' => 'lja', 'Lj5C92G16' => 'lonja', 'Lj5C92T12' => 'lonja', 'Lj7C596T3' => 'lonja', 'Lj9A446G59' => 'lonja', 'Lj9A482G21' => 'lonja', 'Lsat_1_v5_gn_1_28261' => 'lsa', 'Lsat_1_v5_gn_1_28281' => 'lsa', 'Lsat_1_v5_gn_1_32721' => 'lsa', 'Lsat_1_v5_gn_4_151760' => 'lsa', 'Lsat_1_v5_gn_4_2120' => 'lsa', 'Lsat_1_v5_gn_4_75761' => 'lsa', 'Lsat_1_v5_gn_5_10920' => 'lsa', 'Manes.02G099900' => 'mes', 'Manes.11G096200' => 'mes', 'Manes.12G007200' => 'mes', 'Manes.14G048300' => 'mes', 'Manes.17G114700' => 'mes', 'Mapoly0002s0070' => 'mpo', 'Mapoly0029s0099' => 'mpo', 'MBI07_g24742_MAGBIO' => 'mbi', 'MBI10_g27988_MAGBIO' => 'mbi', 'MBI11_g13057_MAGBIO' => 'mbi', 'MD02G1137200' => 'mdo', 'MD06G1137200' => 'mdo', 'MD07G1122300' => 'mdo', 'MD09G1078200' => 'mdo', 'MD13G1123700' => 'mdo', 'MD14G1151900' => 'mdo', 'MD17G1030900' => 'mdo', 'MD17G1068200' => 'mdo', 'MD17G1068600' => 'mdo', 'Medtr3g077540' => 'mtr', 'Medtr4g105530' => 'mtr', 'Medtr8g076580' => 'mtr', 'Medtr8g076590' => 'mtr', 'Medtr8g096410' => 'mtr', 'MELO3C016411.2' => 'cme', 'MELO3C017780.2' => 'cme', 'MELO3C022560.2' => 'cme', 'MELO3C026187.2' => 'cme', 'MELO3C026286.2' => 'cme', 'MELO3C032854.2' => 'cme', 'Migut.H02495' => 'egut', 'Migut.I00561' => 'egut', 'Migut.K01015' => 'egut', 'Migut.K01016' => 'egut', 'Migut.L00743' => 'egut', 'Migut.L00744' => 'egut', 'Migut.L00746' => 'egut', 'Migut.L00798' => 'egut', 'Migut.L00799' => 'egut', 'Migut.N02096' => 'egut', 'MSTRG.11259' => 'ama', 'MSTRG.23142' => 'ama', 'MSTRG.2499' => 'ama', 'Nitab4.5_0000003g0730' => 'nta', 'Nitab4.5_0000137g0020' => 'nta', 'Nitab4.5_0000721g0210' => 'nta', 'Nitab4.5_0000723g0050' => 'nta', 'Nitab4.5_0000913g0070' => 'nta', 'Nitab4.5_0001332g0040' => 'nta', 'Nitab4.5_0001771g0050' => 'nta', 'Nitab4.5_0001918g0050' => 'nta', 'Nitab4.5_0002686g0030' => 'nta', 'Nitab4.5_0003156g0020' => 'nta', 'Nitab4.5_0003383g0040' => 'nta', 'Nitab4.5_0003918g0010' => 'nta', 'Nitab4.5_0006760g0010' => 'nta', 'Nn1g05981' => 'nnu', 'Nn1g06288' => 'nnu', 'Nn3g16371' => 'nnu', 'Nn3g16786' => 'nnu', 'Nn4g22232' => 'nnu', 'Oeu005144.1' => 'oeu', 'Oeu005145.1' => 'oeu', 'Oeu011348.1' => 'oeu', 'Oeu016415.1' => 'oeu', 'Oeu023501.1' => 'oeu', 'Oeu044473.1' => 'oeu', 'Oeu048892.2' => 'oeu', 'Os01g0549200' => 'osa', 'Os02g0469300' => 'osa', 'Os04g0311100' => 'osa', 'Os06g0474900' => 'osa', 'Os10g0181700' => 'osa', 'Os11g0454800' => 'osa', 'Peaxi162Scf00037g00714' => 'pax', 'Peaxi162Scf00084g01217' => 'pax', 'Peaxi162Scf00257g00217' => 'pax', 'Peaxi162Scf00516g00215' => 'pax', 'Peaxi162Scf00689g00123' => 'pax', 'PGR044G2719' => 'pgr', 'PGR083G1360' => 'pgr', 'PGR102G2849' => 'pgr', 'PGR119G2534' => 'pgr', 'PGSC0003DMG400003538' => 'stu', 'PGSC0003DMG400028138' => 'stu', 'PGSC0003DMG400031732' => 'stu', 'PGSC0003DMG400038165' => 'stu', 'Phvul.002G284600' => 'pvu', 'Phvul.003G258200' => 'pvu', 'Phvul.009G176500' => 'pvu', 'Potri.003G167201' => 'ptr', 'Potri.005G118400' => 'ptr', 'Potri.012G089000' => 'ptr', 'Potri.012G102800' => 'ptr', 'Potri.015G079400' => 'ptr', 'Potri.015G100900' => 'ptr', 'Pp3c14_9810' => 'ppa', 'Pp3c15_10450' => 'ppa', 'Pp3c20_19150' => 'ppa', 'Pp3c23_12740' => 'ppa', 'Pp3c23_6310' => 'ppa', 'Pp3c24_3720' => 'ppa', 'Pp3c27_2580' => 'ppa', 'Pp3c9_8990' => 'ppa', 'PRCOL_00002854' => 'pco', 'Prupe.1G221200' => 'ppe', 'Prupe.3G289000' => 'ppe', 'Prupe.5G147000' => 'ppe', 'Prupe.6G157300' => 'ppe', 'Prupe.7G163400' => 'ppe', 'Psat0s2177g0040' => 'psa', 'Psat3g174760' => 'psa', 'Psat3g192160' => 'psa', 'Psat4g058520' => 'psa', 'Psat4g096840' => 'psa', 'Psat7g037320' => 'psa', 'PSO017G1274' => 'pso', 'PSO017G5166' => 'pso', 'PSO063G4558' => 'pso', 'PSO170G4458' => 'pso', 'PSO170G5005' => 'pso', 'PSO210G6156' => 'pso', 'PSO210G6635' => 'pso', 'PSO210G7397' => 'pso', 'PSO210G7700' => 'pso', 'PSO455G0035' => 'pso', 'PSO455G0180' => 'pso', 'PSO478G4515' => 'pso', 'PSO832G1305' => 'pso', 'PSO832G3489' => 'pso', 'QL02p075247' => 'qlo', 'QL03p051148' => 'qlo', 'QL05p010313' => 'qlo', 'QL06p034627' => 'qlo', 'QL10p001889' => 'qlo', 'QL10p010846' => 'qlo', 'RcHm_v2.0_Chr1g0350621' => 'rch', 'RcHm_v2.0_Chr1g0350641' => 'rch', 'RcHm_v2.0_Chr2g0092891' => 'rch', 'RcHm_v2.0_Chr2g0100251' => 'rch', 'RcHm_v2.0_Chr2g0158661' => 'rch', 'RcHm_v2.0_Chr2g0172741' => 'rch', 'RcHm_v2.0_Chr4g0429571' => 'rch', 'RcHm_v2.0_Chr5g0042471' => 'rch', 'RcHm_v2.0_Chr7g0189451' => 'rch', 'Rhsim08G0052000' => 'rsi', 'Rhsim08G0174400' => 'rsi', 'Rhsim08G0193200' => 'rsi', 'Rhsim10G0214800' => 'rsi', 'Rhsim10G0214900' => 'rsi', 'Rhsim10G0215000' => 'rsi', 'Rhsim12G0022900' => 'rsi', 'Rhsim12G0177500' => 'rsi', 'Rhsim12G0177700' => 'rsi', 'Sabra03G0122600' => 'sbr', 'Sabra05G0097400' => 'sbr', 'Sabra12G0064100' => 'sbr', 'Sabra15G0121300' => 'sbr', 'SalBow2G0642' => 'sbo', 'SalBow5G2667' => 'sbo', 'SalBow5G4873' => 'sbo', 'SalBow8G2395' => 'sbo', 'Sc03g0003290' => 'sci', 'Sc10g0010130' => 'sci', 'Sc22g0003650' => 'sci', 'Sed0001603' => 'sed', 'Sed0004259' => 'sed', 'Sed0006789' => 'sed', 'Sed0011838' => 'sed', 'Sed0012964' => 'sed', 'Sed0016383' => 'sed', 'Sed0019010' => 'sed', 'Sed0020188' => 'sed', 'SEGI_04702' => 'sgi', 'SEGI_17231' => 'sgi', 'SEGI_18877' => 'sgi', 'SEGI_25196' => 'sgi', 'SEGI_25515' => 'sgi', 'SEGI_28445' => 'sgi', 'SEGI_37452' => 'sgi', 'SGA_v2.0_scaffold188G40336' => 'sas', 'SGA_v2.0_scaffold228G43247' => 'sas', 'SGA_v2.0_scaffold280G46853' => 'sas', 'SGA_v2.0_scaffold34G13808' => 'sas', 'SGA_v2.0_scaffold40G15576' => 'sas', 'SGA_v2.0_scaffold611G53188' => 'sas', 'SGA_v2.0_scaffold78G25461' => 'sas', 'SGA_v2.0_scaffold90G27888' => 'sas', 'SHI08601' => 'shi', 'SHI08606' => 'shi', 'SHI17117' => 'shi', 'SHI17119' => 'shi', 'SMO118G0201' => 'smo', 'SMO169G0247' => 'smo', 'SMO176G0006' => 'smo', 'SMO176G0015' => 'smo', 'SMO202G0006' => 'smo', 'SMO240G0050' => 'smo', 'SMO286G0009' => 'smo', 'SMO338G0033' => 'smo', 'SMO356G0533' => 'smo', 'SMO364G0382' => 'smo', 'SMO367G0166' => 'smo', 'SMO367G1098' => 'smo', 'Solyc01g009920.3' => 'sly', 'Solyc01g099300.3' => 'sly', 'Solyc02g084700.3' => 'sly', 'Solyc03g097520.3' => 'sly', 'Solyc06g071580.3' => 'sly', 'Solyc10g081760.3' => 'sly', 'Sopen01g005480' => 'spe', 'Sopen01g042850' => 'spe', 'Sopen02g029370' => 'spe', 'Sopen03g028280' => 'spe', 'Sopen06g027870' => 'spe', 'Sopen10g032270' => 'spe', 'Sp5g18180' => 'spa', 'Sp6g12880' => 'spa', 'Sp6g30850' => 'spa', 'Sp7g22960' => 'spa', 'Sp7g34010' => 'spa', 'SpUn1326_0010' => 'spa', 'TAR371G0242' => 'tar', 'TAR622G0638' => 'tar', 'TAR628G1548' => 'tar', 'TAR629G1079' => 'tar', 'TAR629G3413' => 'tar', 'THA.LOC104804249' => 'tha', 'THA.LOC104808315' => 'tha', 'THA.LOC104809238' => 'tha', 'THA.LOC104825484' => 'tha', 'Thecc.01G025500' => 'tca', 'Thecc.03G015800' => 'tca', 'Thecc.03G018000' => 'tca', 'Thecc.03G134800' => 'tca', 'Thecc.04G014700' => 'tca', 'Thhalv10006991m.g' => 'esa', 'Thhalv10012707m.g' => 'esa', 'Thhalv10015739m.g' => 'esa', 'Thhalv10024553m.g' => 'esa', 'Thhalv10024673m.g' => 'esa', 'Thhalv10029187m.g' => 'esa', 'TPR.G12971' => 'tpr', 'TPR.G29396' => 'tpr', 'TPR.G33376' => 'tpr', 'TPR.G35508' => 'tpr', 'TPR.G35516' => 'tpr', 'TPR.G37317' => 'tpr', 'TPR.G37389' => 'tpr', 'TPR.G37523' => 'tpr', 'TPR.G559' => 'tpr', 'TWI14G0070' => 'twi', 'TWI14G0729' => 'twi', 'TWI18G0596' => 'twi', 'TWI39G0780' => 'twi', 'TWI39G0850' => 'twi', 'TWI73G1052' => 'twi', 'unitig_52.g17485' => 'ugi', 'unitig_61.g26355' => 'ugi', 'vmacro01040' => 'vma', 'vmacro16731' => 'vma', 'vmacro18270' => 'vma', 'vmacro19142' => 'vma', 'vmacro19407' => 'vma', 'vmacro19408' => 'vma', 'vmacro21899' => 'vma', 'vmacro21900' => 'vma', 'vmacro21901' => 'vma', 'VMungo0251G0490' => 'vmu', 'VMungo0251G1748' => 'vmu', 'VMungo1309G0421' => 'vmu', 'Zm00001eb086500' => 'zma', 'Zm00001eb150680' => 'zma', 'Zm00001eb162330' => 'zma', 'Zm00001eb203130' => 'zma', 'Zm00001eb369480' => 'zma', 'Zm00001eb382340' => 'zma', 'Zm00001eb416360' => 'zma' ), 'gf_id' => 'HOM05D000902', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000902' ), 'data_identifier' => 'HOM05D000902', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000902', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '663', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02470' => 'bna', 'A01p16260' => 'bna', 'A02p01680' => 'bna', 'A03p16600' => 'bna', 'A03p55660' => 'bna', 'A03p64160' => 'bna', 'A03p64170' => 'bna', 'A08p31900' => 'bna', 'A09p59530' => 'bna', 'A10p08230' => 'bna', 'A10p25090' => 'bna', 'Aa31LG3G7100' => 'aar', 'Aa31LG3G7110' => 'aar', 'Aa31LG6G13160' => 'aar', 'Aa31LG7G10770' => 'aar', 'Aa31LG7G3830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2723' => 'aag', 'Actinidia08045' => 'ach', 'Actinidia08888' => 'ach', 'Actinidia18333' => 'ach', 'Actinidia19334' => 'ach', 'Actinidia25552' => 'ach', 'Actinidia26089' => 'ach', 'Actinidia30615' => 'ach', 'Actinidia30616' => 'ach', 'Actinidia33083' => 'ach', 'Actinidia35762' => 'ach', 'Ah.02g110620' => 'amhyb', 'Ah.11g046390' => 'amhyb', 'AL1G31670' => 'aly', 'AL6G23730' => 'aly', 'AL7G14740' => 'aly', 'AL7G14750' => 'aly', 'AL7G14760' => 'aly', 'AL7G28220' => 'aly', 'AL8G24940' => 'aly', 'Aqoxy3G01665' => 'aox', 'Aqoxy3G02853' => 'aox', 'Aqoxy5G01513' => 'aox', 'Aqoxy5G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8SKA4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ75LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKDA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0LJZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7REX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZP4YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWX7I5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2QKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS0L9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPCD8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q161UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC7XCF' => 'arhy', 'AT1G19100' => 'ath', 'AT4G24970' => 'ath', 'AT4G36270' => 'ath', 'AT4G36280' => 'ath', 'AT4G36290' => 'ath', 'AT5G13130' => 'ath', 'AT5G50780' => 'ath', 'ATR0582G266' => 'atr', 'ATR0661G195' => 'atr', 'ATR1152G031' => 'atr', 'Atru.chr11.2382' => 'acertr', 'Atru.chr12.2337' => 'acertr', 'Atru.chr3.744' => 'acertr', 'Atru.chr6.1870' => 'acertr', 'Atru.chr9.2515' => 'acertr', 'AUR62004120' => 'cqu', 'AUR62005667' => 'cqu', 'AUR62007634' => 'cqu', 'AUR62008186' => 'cqu', 'AUR62008187' => 'cqu', 'AUR62008188' => 'cqu', 'AUR62027954' => 'cqu', 'AUR62028766' => 'cqu', 'AUR62028767' => 'cqu', 'AUR62028768' => 'cqu', 'AUR62028886' => 'cqu', 'AUR62029563' => 'cqu', 'AUR62038832' => 'cqu', 'BcaB01g04149' => 'bca', 'BcaB03g12940' => 'bca', 'BcaB03g13090' => 'bca', 'BcaB03g14466' => 'bca', 'BcaB05g24035' => 'bca', 'BcaC01g06050' => 'bca', 'BcaC04g19148' => 'bca', 'BcaC04g20761' => 'bca', 'BcaC06g32845' => 'bca', 'BcaC07g41274' => 'bca', 'BcaC09g50827' => 'bca', 'BcaNung00741' => 'bca', 'BcaNung00742' => 'bca', 'BcaNung01859' => 'bca', 'BcaNung03985' => 'bca', 'BcaNung03989' => 'bca', 'BcaNung05661' => 'bca', 'BolC1t00257H' => 'bol', 'BolC1t01956H' => 'bol', 'BolC2t06534H' => 'bol', 'BolC3t14334H' => 'bol', 'BolC5t30451H' => 'bol', 'BolC7t45880H' => 'bol', 'BolC7t46586H' => 'bol', 'BolC8t49301H' => 'bol', 'BolC8t51837H' => 'bol', 'BolC9t56822H' => 'bol', 'BolC9t59235H' => 'bol', 'BraA01t00234Z' => 'bra', 'BraA01t01563Z' => 'bra', 'BraA02t05147Z' => 'bra', 'BraA03t10947Z' => 'bra', 'BraA03t14633Z' => 'bra', 'BraA08t35112Z' => 'bra', 'BraA09t41330Z' => 'bra', 'BraA10t44570Z' => 'bra', 'C01p02670' => 'bna', 'C01p20260' => 'bna', 'C02p05890' => 'bna', 'C03p19530' => 'bna', 'C05p17470' => 'bna', 'C07p53900' => 'bna', 'C07p61630' => 'bna', 'C08p16800' => 'bna', 'C08p42810' => 'bna', 'C09p39480' => 'bna', 'C09p63980' => 'bna', 'CAN.G1001.7' => 'can', 'CAN.G1034.55' => 'can', 'CAN.G143.7' => 'can', 'CAN.G3340.1' => 'can', 'CAN.G358.19' => 'can', 'CAN.G373.2' => 'can', 'CAN.G674.16' => 'can', 'CAN.G674.17' => 'can', 'CAN.G674.18' => 'can', 'CAN.G732.2' => 'can', 'CAN.G732.3' => 'can', 'CAN.G993.39' => 'can', 'CANSAT01G2052' => 'cansat', 'CANSAT80G0070' => 'cansat', 'CANSAT80G0483' => 'cansat', 'CANSAT80G0625' => 'cansat', 'CARHR019690' => 'chi', 'CARHR080280' => 'chi', 'CARHR152750' => 'chi', 'CARHR152760' => 'chi', 'CARHR152770' => 'chi', 'CARHR200340' => 'chi', 'CARHR232370' => 'chi', 'CARHR244670' => 'chi', 'CARHR244680' => 'chi', 'CARHR257520' => 'chi', 'Carub.0001s1872' => 'cru', 'Carub.0006s1130' => 'cru', 'Carub.0007s0396' => 'cru', 'Carub.0007s0397' => 'cru', 'Carub.0007s1608' => 'cru', 'Carub.0008s1068' => 'cru', 'Carub.0008s1077' => 'cru', 'Ca_16158_v3' => 'car', 'Ca_17571_v3' => 'car', 'Ca_21936_v3' => 'car', 'Ca_22350_v3' => 'car', 'CBR_g22445' => 'cbr', 'CBR_g26290' => 'cbr', 'Cc04_g09610' => 'ccan', 'Cc04_g12280' => 'ccan', 'Cc07_g10230' => 'ccan', 'CDE02G0093' => 'cde', 'CDE02G0701' => 'cde', 'CDE04G1050' => 'cde', 'CDE05G1833' => 'cde', 'CDE05G3058' => 'cde', 'CDE05G3380' => 'cde', 'CDE06G0536' => 'cde', 'Cfa006923' => 'cfa', 'Cfa009402' => 'cfa', 'Cfa018751' => 'cfa', 'Cfa019164' => 'cfa', 'Cfa022935' => 'cfa', 'Ciclev10019081m.g' => 'ccl', 'Ciclev10025076m.g' => 'ccl', 'Ciclev10030712m.g' => 'ccl', 'Ciclev10033760m.g' => 'ccl', 'CiPaw.05G105600' => 'cil', 'CiPaw.08G136700' => 'cil', 'CiPaw.11G003900' => 'cil', 'CiPaw.11G023700' => 'cil', 'CiPaw.12G003700' => 'cil', 'ClCG06G017100' => 'cla', 'ClCG06G018110' => 'cla', 'ClCG07G008800' => 'cla', 'ClCG07G015330' => 'cla', 'COL.COLO4_13698' => 'col', 'COL.COLO4_16659' => 'col', 'COL.COLO4_21986' => 'col', 'COL.COLO4_24049' => 'col', 'COL.COLO4_29061' => 'col', 'COL.COLO4_29075' => 'col', 'COL.COLO4_30094' => 'col', 'Cpa.g.c33689' => 'cpa', 'Cpa.g.sc108.39' => 'cpa', 'Cpa.g.sc108.41' => 'cpa', 'Cpa.g.sc1163.1' => 'cpa', 'Cpa.g.sc4.155' => 'cpa', 'Cpa.g.sc6.194' => 'cpa', 'CsaV3_1G000340' => 'csa', 'CsaV3_1G001400' => 'csa', 'CsaV3_4G002220' => 'csa', 'CsaV3_4G005370' => 'csa', 'CSS0007487' => 'camsi', 'CSS0008066' => 'camsi', 'CSS0009120' => 'camsi', 'CSS0015512' => 'camsi', 'CSS0022409' => 'camsi', 'CSS0025358' => 'camsi', 'CSS0044547' => 'camsi', 'DCAR_013057' => 'dca', 'DCAR_015058' => 'dca', 'DCAR_016027' => 'dca', 'DCAR_017327' => 'dca', 'DCAR_020743' => 'dca', 'DCAR_026157' => 'dca', 'DCAR_032339' => 'dca', 'DCAR_032340' => 'dca', 'Dinv11200' => 'din', 'Dinv11201' => 'din', 'Dinv20631' => 'din', 'Dinv23182' => 'din', 'Dinv33466' => 'din', 'Dinv33583' => 'din', 'Dinv38565' => 'din', 'Duzib068G0200' => 'dzi', 'Duzib147G0132' => 'dzi', 'Duzib147G0635' => 'dzi', 'Duzib205G1670' => 'dzi', 'Duzib251G0606' => 'dzi', 'ECA232G3336' => 'eca', 'ECA232G3763' => 'eca', 'ECA232G4845' => 'eca', 'ECA234G1607' => 'eca', 'ECA246G0932' => 'eca', 'ECA247G0781' => 'eca', 'ECA247G1932' => 'eca', 'ECA247G2079' => 'eca', 'ECA247G3338' => 'eca', 'ECA247G4115' => 'eca', 'EL10Ac3g06552' => 'bvu', 'EL10Ac5g10721' => 'bvu', 'EL10Ac5g10722' => 'bvu', 'EL10Ac5g10723' => 'bvu', 'EL10Ac5g11361' => 'bvu', 'EL10Ac6g13553' => 'bvu', 'EL10As8g23872' => 'bvu', 'Eucgr.B00250' => 'egr', 'Eucgr.B00251' => 'egr', 'Eucgr.B03533' => 'egr', 'Eucgr.I02381' => 'egr', 'Eucgr.K02700' => 'egr', 'FAN02G0174' => 'fan', 'FAN02G3146' => 'fan', 'FAN04G1672' => 'fan', 'FAN04G2273' => 'fan', 'FAN05G2791' => 'fan', 'FAN05G4035' => 'fan', 'FAN07G0834' => 'fan', 'FAN08G1198' => 'fan', 'FAN09G4182' => 'fan', 'FAN12G0496' => 'fan', 'FAN13G1027' => 'fan', 'FAN13G2951' => 'fan', 'FAN14G0705' => 'fan', 'FAN14G0720' => 'fan', 'FAN17G0201' => 'fan', 'FAN17G2665' => 'fan', 'FAN18G1456' => 'fan', 'FAN18G1525' => 'fan', 'FAN18G3500' => 'fan', 'FAN28G2670' => 'fan', 'FvH4_1g12391' => 'fve', 'FvH4_4g23220' => 'fve', 'FvH4_5g08810' => 'fve', 'FvH4_5g28960' => 'fve', 'FvH4_6g42820' => 'fve', 'FvH4_6g51110' => 'fve', 'Glyma.02G051802' => 'gma', 'Glyma.04G185300' => 'gma', 'Glyma.05G202900' => 'gma', 'Glyma.08G010300' => 'gma', 'Glyma.16G131900' => 'gma', 'Glyma.17G087900' => 'gma', 'Gohir.A07G048600' => 'ghi', 'Gohir.A11G179000' => 'ghi', 'Gohir.A12G140900' => 'ghi', 'Gohir.A12G140950' => 'ghi', 'Gohir.A12G191700' => 'ghi', 'Gohir.A13G086300' => 'ghi', 'Gohir.D07G052900' => 'ghi', 'Gohir.D11G186600' => 'ghi', 'Gohir.D12G145575' => 'ghi', 'Gohir.D12G145650' => 'ghi', 'Gohir.D12G145725' => 'ghi', 'Gohir.D12G194050' => 'ghi', 'Gohir.D13G091800' => 'ghi', 'Gorai.001G055900' => 'gra', 'Gorai.007G198400' => 'gra', 'Gorai.008G157000' => 'gra', 'Gorai.008G157100' => 'gra', 'Gorai.008G208700' => 'gra', 'Gorai.010G138700' => 'gra', 'GSVIVG01000977001' => 'vvi', 'GSVIVG01007708001' => 'vvi', 'GSVIVG01008587001' => 'vvi', 'GSVIVG01018849001' => 'vvi', 'GSVIVG01032432001' => 'vvi', 'HanXRQChr02g0034131' => 'han', 'HanXRQChr02g0035981' => 'han', 'HanXRQChr02g0035991' => 'han', 'HanXRQChr05g0155611' => 'han', 'HanXRQChr05g0155621' => 'han', 'HanXRQChr08g0236501' => 'han', 'HanXRQChr09g0261321' => 'han', 'HanXRQChr09g0272081' => 'han', 'HanXRQChr10g0310741' => 'han', 'HanXRQChr11g0325591' => 'han', 'HanXRQChr12g0385691' => 'han', 'HanXRQChr13g0387801' => 'han', 'HanXRQChr15g0463011' => 'han', 'Haze_03826' => 'cav', 'Haze_03827' => 'cav', 'Haze_07183' => 'cav', 'Haze_07537' => 'cav', 'Haze_07539' => 'cav', 'Haze_12461' => 'cav', 'Haze_16115' => 'cav', 'Haze_16808' => 'cav', 'Haze_18531' => 'cav', 'Hma1.2p1_0046F.1_g026700' => 'hma', 'Hma1.2p1_0046F.1_g026710' => 'hma', 'Hma1.2p1_0168F.1_g074340' => 'hma', 'Hma1.2p1_0266F.1_g107030' => 'hma', 'Hma1.2p1_0266F.1_g107060' => 'hma', 'Hma1.2p1_0275F.1_g110510' => 'hma', 'Hma1.2p1_0592F.1_g185490' => 'hma', 'Hma1.2p1_0592F.1_g185500' => 'hma', 'Hma1.2p1_0592F.1_g185510' => 'hma', 'Hma1.2p1_0592F.1_g185520' => 'hma', 'Hma1.2p1_0592F.1_g185530' => 'hma', 'Hma1.2p1_0818F.1_g223450' => 'hma', 'HPP92_009708' => 'vpl', 'HPP92_009793' => 'vpl', 'HPP92_009796' => 'vpl', 'HPP92_009797' => 'vpl', 'HPP92_014940' => 'vpl', 'HPP92_014988' => 'vpl', 'Hund02463' => 'sun', 'Hund02760' => 'sun', 'Hund05071' => 'sun', 'Hund10108' => 'sun', 'Hund11204' => 'sun', 'Hund14016' => 'sun', 'Hund16464' => 'sun', 'Lalb_Chr09g0333391' => 'lal', 'Lalb_Chr11g0070461' => 'lal', 'Lalb_Chr12g0201671' => 'lal', 'Lalb_Chr13g0297161' => 'lal', 'Lj1g0002823' => 'lja', 'Lj3C1074T6' => 'lonja', 'Lj4A212T28' => 'lonja', 'Lj4g0005516' => 'lja', 'Lj4g0013705' => 'lja', 'Lj4g0027865' => 'lja', 'Lj5C92G16' => 'lonja', 'Lj5C92T12' => 'lonja', 'Lj7C596T3' => 'lonja', 'Lj9A446G59' => 'lonja', 'Lj9A482G21' => 'lonja', 'Lsat_1_v5_gn_1_28261' => 'lsa', 'Lsat_1_v5_gn_1_28281' => 'lsa', 'Lsat_1_v5_gn_1_32721' => 'lsa', 'Lsat_1_v5_gn_4_151760' => 'lsa', 'Lsat_1_v5_gn_4_2120' => 'lsa', 'Lsat_1_v5_gn_4_75761' => 'lsa', 'Lsat_1_v5_gn_5_10920' => 'lsa', 'Manes.02G099900' => 'mes', 'Manes.11G096200' => 'mes', 'Manes.12G007200' => 'mes', 'Manes.14G048300' => 'mes', 'Manes.17G114700' => 'mes', 'Mapoly0002s0070' => 'mpo', 'Mapoly0029s0099' => 'mpo', 'MBI07_g24742_MAGBIO' => 'mbi', 'MBI10_g27988_MAGBIO' => 'mbi', 'MBI11_g13057_MAGBIO' => 'mbi', 'MD02G1137200' => 'mdo', 'MD06G1137200' => 'mdo', 'MD07G1122300' => 'mdo', 'MD09G1078200' => 'mdo', 'MD13G1123700' => 'mdo', 'MD14G1151900' => 'mdo', 'MD17G1030900' => 'mdo', 'MD17G1068200' => 'mdo', 'MD17G1068600' => 'mdo', 'Medtr3g077540' => 'mtr', 'Medtr4g105530' => 'mtr', 'Medtr8g076580' => 'mtr', 'Medtr8g076590' => 'mtr', 'Medtr8g096410' => 'mtr', 'MELO3C016411.2' => 'cme', 'MELO3C017780.2' => 'cme', 'MELO3C022560.2' => 'cme', 'MELO3C026187.2' => 'cme', 'MELO3C026286.2' => 'cme', 'MELO3C032854.2' => 'cme', 'Migut.H02495' => 'egut', 'Migut.I00561' => 'egut', 'Migut.K01015' => 'egut', 'Migut.K01016' => 'egut', 'Migut.L00743' => 'egut', 'Migut.L00744' => 'egut', 'Migut.L00746' => 'egut', 'Migut.L00798' => 'egut', 'Migut.L00799' => 'egut', 'Migut.N02096' => 'egut', 'MSTRG.11259' => 'ama', 'MSTRG.23142' => 'ama', 'MSTRG.2499' => 'ama', 'Nitab4.5_0000003g0730' => 'nta', 'Nitab4.5_0000137g0020' => 'nta', 'Nitab4.5_0000721g0210' => 'nta', 'Nitab4.5_0000723g0050' => 'nta', 'Nitab4.5_0000913g0070' => 'nta', 'Nitab4.5_0001332g0040' => 'nta', 'Nitab4.5_0001771g0050' => 'nta', 'Nitab4.5_0001918g0050' => 'nta', 'Nitab4.5_0002686g0030' => 'nta', 'Nitab4.5_0003156g0020' => 'nta', 'Nitab4.5_0003383g0040' => 'nta', 'Nitab4.5_0003918g0010' => 'nta', 'Nitab4.5_0006760g0010' => 'nta', 'Nn1g05981' => 'nnu', 'Nn1g06288' => 'nnu', 'Nn3g16371' => 'nnu', 'Nn3g16786' => 'nnu', 'Nn4g22232' => 'nnu', 'Oeu005144.1' => 'oeu', 'Oeu005145.1' => 'oeu', 'Oeu011348.1' => 'oeu', 'Oeu016415.1' => 'oeu', 'Oeu023501.1' => 'oeu', 'Oeu044473.1' => 'oeu', 'Oeu048892.2' => 'oeu', 'Os01g0549200' => 'osa', 'Os02g0469300' => 'osa', 'Os04g0311100' => 'osa', 'Os06g0474900' => 'osa', 'Os10g0181700' => 'osa', 'Os11g0454800' => 'osa', 'Peaxi162Scf00037g00714' => 'pax', 'Peaxi162Scf00084g01217' => 'pax', 'Peaxi162Scf00257g00217' => 'pax', 'Peaxi162Scf00516g00215' => 'pax', 'Peaxi162Scf00689g00123' => 'pax', 'PGR044G2719' => 'pgr', 'PGR083G1360' => 'pgr', 'PGR102G2849' => 'pgr', 'PGR119G2534' => 'pgr', 'PGSC0003DMG400003538' => 'stu', 'PGSC0003DMG400028138' => 'stu', 'PGSC0003DMG400031732' => 'stu', 'PGSC0003DMG400038165' => 'stu', 'Phvul.002G284600' => 'pvu', 'Phvul.003G258200' => 'pvu', 'Phvul.009G176500' => 'pvu', 'Potri.003G167201' => 'ptr', 'Potri.005G118400' => 'ptr', 'Potri.012G089000' => 'ptr', 'Potri.012G102800' => 'ptr', 'Potri.015G079400' => 'ptr', 'Potri.015G100900' => 'ptr', 'Pp3c14_9810' => 'ppa', 'Pp3c15_10450' => 'ppa', 'Pp3c20_19150' => 'ppa', 'Pp3c23_12740' => 'ppa', 'Pp3c23_6310' => 'ppa', 'Pp3c24_3720' => 'ppa', 'Pp3c27_2580' => 'ppa', 'Pp3c9_8990' => 'ppa', 'PRCOL_00002854' => 'pco', 'Prupe.1G221200' => 'ppe', 'Prupe.3G289000' => 'ppe', 'Prupe.5G147000' => 'ppe', 'Prupe.6G157300' => 'ppe', 'Prupe.7G163400' => 'ppe', 'Psat0s2177g0040' => 'psa', 'Psat3g174760' => 'psa', 'Psat3g192160' => 'psa', 'Psat4g058520' => 'psa', 'Psat4g096840' => 'psa', 'Psat7g037320' => 'psa', 'PSO017G1274' => 'pso', 'PSO017G5166' => 'pso', 'PSO063G4558' => 'pso', 'PSO170G4458' => 'pso', 'PSO170G5005' => 'pso', 'PSO210G6156' => 'pso', 'PSO210G6635' => 'pso', 'PSO210G7397' => 'pso', 'PSO210G7700' => 'pso', 'PSO455G0035' => 'pso', 'PSO455G0180' => 'pso', 'PSO478G4515' => 'pso', 'PSO832G1305' => 'pso', 'PSO832G3489' => 'pso', 'QL02p075247' => 'qlo', 'QL03p051148' => 'qlo', 'QL05p010313' => 'qlo', 'QL06p034627' => 'qlo', 'QL10p001889' => 'qlo', 'QL10p010846' => 'qlo', 'RcHm_v2.0_Chr1g0350621' => 'rch', 'RcHm_v2.0_Chr1g0350641' => 'rch', 'RcHm_v2.0_Chr2g0092891' => 'rch', 'RcHm_v2.0_Chr2g0100251' => 'rch', 'RcHm_v2.0_Chr2g0158661' => 'rch', 'RcHm_v2.0_Chr2g0172741' => 'rch', 'RcHm_v2.0_Chr4g0429571' => 'rch', 'RcHm_v2.0_Chr5g0042471' => 'rch', 'RcHm_v2.0_Chr7g0189451' => 'rch', 'Rhsim08G0052000' => 'rsi', 'Rhsim08G0174400' => 'rsi', 'Rhsim08G0193200' => 'rsi', 'Rhsim10G0214800' => 'rsi', 'Rhsim10G0214900' => 'rsi', 'Rhsim10G0215000' => 'rsi', 'Rhsim12G0022900' => 'rsi', 'Rhsim12G0177500' => 'rsi', 'Rhsim12G0177700' => 'rsi', 'Sabra03G0122600' => 'sbr', 'Sabra05G0097400' => 'sbr', 'Sabra12G0064100' => 'sbr', 'Sabra15G0121300' => 'sbr', 'SalBow2G0642' => 'sbo', 'SalBow5G2667' => 'sbo', 'SalBow5G4873' => 'sbo', 'SalBow8G2395' => 'sbo', 'Sc03g0003290' => 'sci', 'Sc10g0010130' => 'sci', 'Sc22g0003650' => 'sci', 'Sed0001603' => 'sed', 'Sed0004259' => 'sed', 'Sed0006789' => 'sed', 'Sed0011838' => 'sed', 'Sed0012964' => 'sed', 'Sed0016383' => 'sed', 'Sed0019010' => 'sed', 'Sed0020188' => 'sed', 'SEGI_04702' => 'sgi', 'SEGI_17231' => 'sgi', 'SEGI_18877' => 'sgi', 'SEGI_25196' => 'sgi', 'SEGI_25515' => 'sgi', 'SEGI_28445' => 'sgi', 'SEGI_37452' => 'sgi', 'SGA_v2.0_scaffold188G40336' => 'sas', 'SGA_v2.0_scaffold228G43247' => 'sas', 'SGA_v2.0_scaffold280G46853' => 'sas', 'SGA_v2.0_scaffold34G13808' => 'sas', 'SGA_v2.0_scaffold40G15576' => 'sas', 'SGA_v2.0_scaffold611G53188' => 'sas', 'SGA_v2.0_scaffold78G25461' => 'sas', 'SGA_v2.0_scaffold90G27888' => 'sas', 'SHI08601' => 'shi', 'SHI08606' => 'shi', 'SHI17117' => 'shi', 'SHI17119' => 'shi', 'SMO118G0201' => 'smo', 'SMO169G0247' => 'smo', 'SMO176G0006' => 'smo', 'SMO176G0015' => 'smo', 'SMO202G0006' => 'smo', 'SMO240G0050' => 'smo', 'SMO286G0009' => 'smo', 'SMO338G0033' => 'smo', 'SMO356G0533' => 'smo', 'SMO364G0382' => 'smo', 'SMO367G0166' => 'smo', 'SMO367G1098' => 'smo', 'Solyc01g009920.3' => 'sly', 'Solyc01g099300.3' => 'sly', 'Solyc02g084700.3' => 'sly', 'Solyc03g097520.3' => 'sly', 'Solyc06g071580.3' => 'sly', 'Solyc10g081760.3' => 'sly', 'Sopen01g005480' => 'spe', 'Sopen01g042850' => 'spe', 'Sopen02g029370' => 'spe', 'Sopen03g028280' => 'spe', 'Sopen06g027870' => 'spe', 'Sopen10g032270' => 'spe', 'Sp5g18180' => 'spa', 'Sp6g12880' => 'spa', 'Sp6g30850' => 'spa', 'Sp7g22960' => 'spa', 'Sp7g34010' => 'spa', 'SpUn1326_0010' => 'spa', 'TAR371G0242' => 'tar', 'TAR622G0638' => 'tar', 'TAR628G1548' => 'tar', 'TAR629G1079' => 'tar', 'TAR629G3413' => 'tar', 'THA.LOC104804249' => 'tha', 'THA.LOC104808315' => 'tha', 'THA.LOC104809238' => 'tha', 'THA.LOC104825484' => 'tha', 'Thecc.01G025500' => 'tca', 'Thecc.03G015800' => 'tca', 'Thecc.03G018000' => 'tca', 'Thecc.03G134800' => 'tca', 'Thecc.04G014700' => 'tca', 'Thhalv10006991m.g' => 'esa', 'Thhalv10012707m.g' => 'esa', 'Thhalv10015739m.g' => 'esa', 'Thhalv10024553m.g' => 'esa', 'Thhalv10024673m.g' => 'esa', 'Thhalv10029187m.g' => 'esa', 'TPR.G12971' => 'tpr', 'TPR.G29396' => 'tpr', 'TPR.G33376' => 'tpr', 'TPR.G35508' => 'tpr', 'TPR.G35516' => 'tpr', 'TPR.G37317' => 'tpr', 'TPR.G37389' => 'tpr', 'TPR.G37523' => 'tpr', 'TPR.G559' => 'tpr', 'TWI14G0070' => 'twi', 'TWI14G0729' => 'twi', 'TWI18G0596' => 'twi', 'TWI39G0780' => 'twi', 'TWI39G0850' => 'twi', 'TWI73G1052' => 'twi', 'unitig_52.g17485' => 'ugi', 'unitig_61.g26355' => 'ugi', 'vmacro01040' => 'vma', 'vmacro16731' => 'vma', 'vmacro18270' => 'vma', 'vmacro19142' => 'vma', 'vmacro19407' => 'vma', 'vmacro19408' => 'vma', 'vmacro21899' => 'vma', 'vmacro21900' => 'vma', 'vmacro21901' => 'vma', 'VMungo0251G0490' => 'vmu', 'VMungo0251G1748' => 'vmu', 'VMungo1309G0421' => 'vmu', 'Zm00001eb086500' => 'zma', 'Zm00001eb150680' => 'zma', 'Zm00001eb162330' => 'zma', 'Zm00001eb203130' => 'zma', 'Zm00001eb369480' => 'zma', 'Zm00001eb382340' => 'zma', 'Zm00001eb416360' => 'zma' ) $gf_id = 'HOM05D000902' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000902' ) $data_identifier = 'HOM05D000902' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 13, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 10, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 6, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 9, 'hma' => (int) 12, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 4, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 6, 'ppa' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 6, 'rch' => (int) 9, 'rsi' => (int) 9, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 12, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 3, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416360' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000902', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '663', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02470' => 'bna', 'A01p16260' => 'bna', 'A02p01680' => 'bna', 'A03p16600' => 'bna', 'A03p55660' => 'bna', 'A03p64160' => 'bna', 'A03p64170' => 'bna', 'A08p31900' => 'bna', 'A09p59530' => 'bna', 'A10p08230' => 'bna', 'A10p25090' => 'bna', 'Aa31LG3G7100' => 'aar', 'Aa31LG3G7110' => 'aar', 'Aa31LG6G13160' => 'aar', 'Aa31LG7G10770' => 'aar', 'Aa31LG7G3830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2723' => 'aag', 'Actinidia08045' => 'ach', 'Actinidia08888' => 'ach', 'Actinidia18333' => 'ach', 'Actinidia19334' => 'ach', 'Actinidia25552' => 'ach', 'Actinidia26089' => 'ach', 'Actinidia30615' => 'ach', 'Actinidia30616' => 'ach', 'Actinidia33083' => 'ach', 'Actinidia35762' => 'ach', 'Ah.02g110620' => 'amhyb', 'Ah.11g046390' => 'amhyb', 'AL1G31670' => 'aly', 'AL6G23730' => 'aly', 'AL7G14740' => 'aly', 'AL7G14750' => 'aly', 'AL7G14760' => 'aly', 'AL7G28220' => 'aly', 'AL8G24940' => 'aly', 'Aqoxy3G01665' => 'aox', 'Aqoxy3G02853' => 'aox', 'Aqoxy5G01513' => 'aox', 'Aqoxy5G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8SKA4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ75LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKDA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0LJZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7REX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZP4YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWX7I5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2QKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS0L9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPCD8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q161UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC7XCF' => 'arhy', 'AT1G19100' => 'ath', 'AT4G24970' => 'ath', 'AT4G36270' => 'ath', 'AT4G36280' => 'ath', 'AT4G36290' => 'ath', 'AT5G13130' => 'ath', 'AT5G50780' => 'ath', 'ATR0582G266' => 'atr', 'ATR0661G195' => 'atr', 'ATR1152G031' => 'atr', 'Atru.chr11.2382' => 'acertr', 'Atru.chr12.2337' => 'acertr', 'Atru.chr3.744' => 'acertr', 'Atru.chr6.1870' => 'acertr', 'Atru.chr9.2515' => 'acertr', 'AUR62004120' => 'cqu', 'AUR62005667' => 'cqu', 'AUR62007634' => 'cqu', 'AUR62008186' => 'cqu', 'AUR62008187' => 'cqu', 'AUR62008188' => 'cqu', 'AUR62027954' => 'cqu', 'AUR62028766' => 'cqu', 'AUR62028767' => 'cqu', 'AUR62028768' => 'cqu', 'AUR62028886' => 'cqu', 'AUR62029563' => 'cqu', 'AUR62038832' => 'cqu', 'BcaB01g04149' => 'bca', 'BcaB03g12940' => 'bca', 'BcaB03g13090' => 'bca', 'BcaB03g14466' => 'bca', 'BcaB05g24035' => 'bca', 'BcaC01g06050' => 'bca', 'BcaC04g19148' => 'bca', 'BcaC04g20761' => 'bca', 'BcaC06g32845' => 'bca', 'BcaC07g41274' => 'bca', 'BcaC09g50827' => 'bca', 'BcaNung00741' => 'bca', 'BcaNung00742' => 'bca', 'BcaNung01859' => 'bca', 'BcaNung03985' => 'bca', 'BcaNung03989' => 'bca', 'BcaNung05661' => 'bca', 'BolC1t00257H' => 'bol', 'BolC1t01956H' => 'bol', 'BolC2t06534H' => 'bol', 'BolC3t14334H' => 'bol', 'BolC5t30451H' => 'bol', 'BolC7t45880H' => 'bol', 'BolC7t46586H' => 'bol', 'BolC8t49301H' => 'bol', 'BolC8t51837H' => 'bol', 'BolC9t56822H' => 'bol', 'BolC9t59235H' => 'bol', 'BraA01t00234Z' => 'bra', 'BraA01t01563Z' => 'bra', 'BraA02t05147Z' => 'bra', 'BraA03t10947Z' => 'bra', 'BraA03t14633Z' => 'bra', 'BraA08t35112Z' => 'bra', 'BraA09t41330Z' => 'bra', 'BraA10t44570Z' => 'bra', 'C01p02670' => 'bna', 'C01p20260' => 'bna', 'C02p05890' => 'bna', 'C03p19530' => 'bna', 'C05p17470' => 'bna', 'C07p53900' => 'bna', 'C07p61630' => 'bna', 'C08p16800' => 'bna', 'C08p42810' => 'bna', 'C09p39480' => 'bna', 'C09p63980' => 'bna', 'CAN.G1001.7' => 'can', 'CAN.G1034.55' => 'can', 'CAN.G143.7' => 'can', 'CAN.G3340.1' => 'can', 'CAN.G358.19' => 'can', 'CAN.G373.2' => 'can', 'CAN.G674.16' => 'can', 'CAN.G674.17' => 'can', 'CAN.G674.18' => 'can', 'CAN.G732.2' => 'can', 'CAN.G732.3' => 'can', 'CAN.G993.39' => 'can', 'CANSAT01G2052' => 'cansat', 'CANSAT80G0070' => 'cansat', 'CANSAT80G0483' => 'cansat', 'CANSAT80G0625' => 'cansat', 'CARHR019690' => 'chi', 'CARHR080280' => 'chi', 'CARHR152750' => 'chi', 'CARHR152760' => 'chi', 'CARHR152770' => 'chi', 'CARHR200340' => 'chi', 'CARHR232370' => 'chi', 'CARHR244670' => 'chi', 'CARHR244680' => 'chi', 'CARHR257520' => 'chi', 'Carub.0001s1872' => 'cru', 'Carub.0006s1130' => 'cru', 'Carub.0007s0396' => 'cru', 'Carub.0007s0397' => 'cru', 'Carub.0007s1608' => 'cru', 'Carub.0008s1068' => 'cru', 'Carub.0008s1077' => 'cru', 'Ca_16158_v3' => 'car', 'Ca_17571_v3' => 'car', 'Ca_21936_v3' => 'car', 'Ca_22350_v3' => 'car', 'CBR_g22445' => 'cbr', 'CBR_g26290' => 'cbr', 'Cc04_g09610' => 'ccan', 'Cc04_g12280' => 'ccan', 'Cc07_g10230' => 'ccan', 'CDE02G0093' => 'cde', 'CDE02G0701' => 'cde', 'CDE04G1050' => 'cde', 'CDE05G1833' => 'cde', 'CDE05G3058' => 'cde', 'CDE05G3380' => 'cde', 'CDE06G0536' => 'cde', 'Cfa006923' => 'cfa', 'Cfa009402' => 'cfa', 'Cfa018751' => 'cfa', 'Cfa019164' => 'cfa', 'Cfa022935' => 'cfa', 'Ciclev10019081m.g' => 'ccl', 'Ciclev10025076m.g' => 'ccl', 'Ciclev10030712m.g' => 'ccl', 'Ciclev10033760m.g' => 'ccl', 'CiPaw.05G105600' => 'cil', 'CiPaw.08G136700' => 'cil', 'CiPaw.11G003900' => 'cil', 'CiPaw.11G023700' => 'cil', 'CiPaw.12G003700' => 'cil', 'ClCG06G017100' => 'cla', 'ClCG06G018110' => 'cla', 'ClCG07G008800' => 'cla', 'ClCG07G015330' => 'cla', 'COL.COLO4_13698' => 'col', 'COL.COLO4_16659' => 'col', 'COL.COLO4_21986' => 'col', 'COL.COLO4_24049' => 'col', 'COL.COLO4_29061' => 'col', 'COL.COLO4_29075' => 'col', 'COL.COLO4_30094' => 'col', 'Cpa.g.c33689' => 'cpa', 'Cpa.g.sc108.39' => 'cpa', 'Cpa.g.sc108.41' => 'cpa', 'Cpa.g.sc1163.1' => 'cpa', 'Cpa.g.sc4.155' => 'cpa', 'Cpa.g.sc6.194' => 'cpa', 'CsaV3_1G000340' => 'csa', 'CsaV3_1G001400' => 'csa', 'CsaV3_4G002220' => 'csa', 'CsaV3_4G005370' => 'csa', 'CSS0007487' => 'camsi', 'CSS0008066' => 'camsi', 'CSS0009120' => 'camsi', 'CSS0015512' => 'camsi', 'CSS0022409' => 'camsi', 'CSS0025358' => 'camsi', 'CSS0044547' => 'camsi', 'DCAR_013057' => 'dca', 'DCAR_015058' => 'dca', 'DCAR_016027' => 'dca', 'DCAR_017327' => 'dca', 'DCAR_020743' => 'dca', 'DCAR_026157' => 'dca', 'DCAR_032339' => 'dca', 'DCAR_032340' => 'dca', 'Dinv11200' => 'din', 'Dinv11201' => 'din', 'Dinv20631' => 'din', 'Dinv23182' => 'din', 'Dinv33466' => 'din', 'Dinv33583' => 'din', 'Dinv38565' => 'din', 'Duzib068G0200' => 'dzi', 'Duzib147G0132' => 'dzi', 'Duzib147G0635' => 'dzi', 'Duzib205G1670' => 'dzi', 'Duzib251G0606' => 'dzi', 'ECA232G3336' => 'eca', 'ECA232G3763' => 'eca', 'ECA232G4845' => 'eca', 'ECA234G1607' => 'eca', 'ECA246G0932' => 'eca', 'ECA247G0781' => 'eca', 'ECA247G1932' => 'eca', 'ECA247G2079' => 'eca', 'ECA247G3338' => 'eca', 'ECA247G4115' => 'eca', 'EL10Ac3g06552' => 'bvu', 'EL10Ac5g10721' => 'bvu', 'EL10Ac5g10722' => 'bvu', 'EL10Ac5g10723' => 'bvu', 'EL10Ac5g11361' => 'bvu', 'EL10Ac6g13553' => 'bvu', 'EL10As8g23872' => 'bvu', 'Eucgr.B00250' => 'egr', 'Eucgr.B00251' => 'egr', 'Eucgr.B03533' => 'egr', 'Eucgr.I02381' => 'egr', 'Eucgr.K02700' => 'egr', 'FAN02G0174' => 'fan', 'FAN02G3146' => 'fan', 'FAN04G1672' => 'fan', 'FAN04G2273' => 'fan', 'FAN05G2791' => 'fan', 'FAN05G4035' => 'fan', 'FAN07G0834' => 'fan', 'FAN08G1198' => 'fan', 'FAN09G4182' => 'fan', 'FAN12G0496' => 'fan', 'FAN13G1027' => 'fan', 'FAN13G2951' => 'fan', 'FAN14G0705' => 'fan', 'FAN14G0720' => 'fan', 'FAN17G0201' => 'fan', 'FAN17G2665' => 'fan', 'FAN18G1456' => 'fan', 'FAN18G1525' => 'fan', 'FAN18G3500' => 'fan', 'FAN28G2670' => 'fan', 'FvH4_1g12391' => 'fve', 'FvH4_4g23220' => 'fve', 'FvH4_5g08810' => 'fve', 'FvH4_5g28960' => 'fve', 'FvH4_6g42820' => 'fve', 'FvH4_6g51110' => 'fve', 'Glyma.02G051802' => 'gma', 'Glyma.04G185300' => 'gma', 'Glyma.05G202900' => 'gma', 'Glyma.08G010300' => 'gma', 'Glyma.16G131900' => 'gma', 'Glyma.17G087900' => 'gma', 'Gohir.A07G048600' => 'ghi', 'Gohir.A11G179000' => 'ghi', 'Gohir.A12G140900' => 'ghi', 'Gohir.A12G140950' => 'ghi', 'Gohir.A12G191700' => 'ghi', 'Gohir.A13G086300' => 'ghi', 'Gohir.D07G052900' => 'ghi', 'Gohir.D11G186600' => 'ghi', 'Gohir.D12G145575' => 'ghi', 'Gohir.D12G145650' => 'ghi', 'Gohir.D12G145725' => 'ghi', 'Gohir.D12G194050' => 'ghi', 'Gohir.D13G091800' => 'ghi', 'Gorai.001G055900' => 'gra', 'Gorai.007G198400' => 'gra', 'Gorai.008G157000' => 'gra', 'Gorai.008G157100' => 'gra', 'Gorai.008G208700' => 'gra', 'Gorai.010G138700' => 'gra', 'GSVIVG01000977001' => 'vvi', 'GSVIVG01007708001' => 'vvi', 'GSVIVG01008587001' => 'vvi', 'GSVIVG01018849001' => 'vvi', 'GSVIVG01032432001' => 'vvi', 'HanXRQChr02g0034131' => 'han', 'HanXRQChr02g0035981' => 'han', 'HanXRQChr02g0035991' => 'han', 'HanXRQChr05g0155611' => 'han', 'HanXRQChr05g0155621' => 'han', 'HanXRQChr08g0236501' => 'han', 'HanXRQChr09g0261321' => 'han', 'HanXRQChr09g0272081' => 'han', 'HanXRQChr10g0310741' => 'han', 'HanXRQChr11g0325591' => 'han', 'HanXRQChr12g0385691' => 'han', 'HanXRQChr13g0387801' => 'han', 'HanXRQChr15g0463011' => 'han', 'Haze_03826' => 'cav', 'Haze_03827' => 'cav', 'Haze_07183' => 'cav', 'Haze_07537' => 'cav', 'Haze_07539' => 'cav', 'Haze_12461' => 'cav', 'Haze_16115' => 'cav', 'Haze_16808' => 'cav', 'Haze_18531' => 'cav', 'Hma1.2p1_0046F.1_g026700' => 'hma', 'Hma1.2p1_0046F.1_g026710' => 'hma', 'Hma1.2p1_0168F.1_g074340' => 'hma', 'Hma1.2p1_0266F.1_g107030' => 'hma', 'Hma1.2p1_0266F.1_g107060' => 'hma', 'Hma1.2p1_0275F.1_g110510' => 'hma', 'Hma1.2p1_0592F.1_g185490' => 'hma', 'Hma1.2p1_0592F.1_g185500' => 'hma', 'Hma1.2p1_0592F.1_g185510' => 'hma', 'Hma1.2p1_0592F.1_g185520' => 'hma', 'Hma1.2p1_0592F.1_g185530' => 'hma', 'Hma1.2p1_0818F.1_g223450' => 'hma', 'HPP92_009708' => 'vpl', 'HPP92_009793' => 'vpl', 'HPP92_009796' => 'vpl', 'HPP92_009797' => 'vpl', 'HPP92_014940' => 'vpl', 'HPP92_014988' => 'vpl', 'Hund02463' => 'sun', 'Hund02760' => 'sun', 'Hund05071' => 'sun', 'Hund10108' => 'sun', 'Hund11204' => 'sun', 'Hund14016' => 'sun', 'Hund16464' => 'sun', 'Lalb_Chr09g0333391' => 'lal', 'Lalb_Chr11g0070461' => 'lal', 'Lalb_Chr12g0201671' => 'lal', 'Lalb_Chr13g0297161' => 'lal', 'Lj1g0002823' => 'lja', 'Lj3C1074T6' => 'lonja', 'Lj4A212T28' => 'lonja', 'Lj4g0005516' => 'lja', 'Lj4g0013705' => 'lja', 'Lj4g0027865' => 'lja', 'Lj5C92G16' => 'lonja', 'Lj5C92T12' => 'lonja', 'Lj7C596T3' => 'lonja', 'Lj9A446G59' => 'lonja', 'Lj9A482G21' => 'lonja', 'Lsat_1_v5_gn_1_28261' => 'lsa', 'Lsat_1_v5_gn_1_28281' => 'lsa', 'Lsat_1_v5_gn_1_32721' => 'lsa', 'Lsat_1_v5_gn_4_151760' => 'lsa', 'Lsat_1_v5_gn_4_2120' => 'lsa', 'Lsat_1_v5_gn_4_75761' => 'lsa', 'Lsat_1_v5_gn_5_10920' => 'lsa', 'Manes.02G099900' => 'mes', 'Manes.11G096200' => 'mes', 'Manes.12G007200' => 'mes', 'Manes.14G048300' => 'mes', 'Manes.17G114700' => 'mes', 'Mapoly0002s0070' => 'mpo', 'Mapoly0029s0099' => 'mpo', 'MBI07_g24742_MAGBIO' => 'mbi', 'MBI10_g27988_MAGBIO' => 'mbi', 'MBI11_g13057_MAGBIO' => 'mbi', 'MD02G1137200' => 'mdo', 'MD06G1137200' => 'mdo', 'MD07G1122300' => 'mdo', 'MD09G1078200' => 'mdo', 'MD13G1123700' => 'mdo', 'MD14G1151900' => 'mdo', 'MD17G1030900' => 'mdo', 'MD17G1068200' => 'mdo', 'MD17G1068600' => 'mdo', 'Medtr3g077540' => 'mtr', 'Medtr4g105530' => 'mtr', 'Medtr8g076580' => 'mtr', 'Medtr8g076590' => 'mtr', 'Medtr8g096410' => 'mtr', 'MELO3C016411.2' => 'cme', 'MELO3C017780.2' => 'cme', 'MELO3C022560.2' => 'cme', 'MELO3C026187.2' => 'cme', 'MELO3C026286.2' => 'cme', 'MELO3C032854.2' => 'cme', 'Migut.H02495' => 'egut', 'Migut.I00561' => 'egut', 'Migut.K01015' => 'egut', 'Migut.K01016' => 'egut', 'Migut.L00743' => 'egut', 'Migut.L00744' => 'egut', 'Migut.L00746' => 'egut', 'Migut.L00798' => 'egut', 'Migut.L00799' => 'egut', 'Migut.N02096' => 'egut', 'MSTRG.11259' => 'ama', 'MSTRG.23142' => 'ama', 'MSTRG.2499' => 'ama', 'Nitab4.5_0000003g0730' => 'nta', 'Nitab4.5_0000137g0020' => 'nta', 'Nitab4.5_0000721g0210' => 'nta', 'Nitab4.5_0000723g0050' => 'nta', 'Nitab4.5_0000913g0070' => 'nta', 'Nitab4.5_0001332g0040' => 'nta', 'Nitab4.5_0001771g0050' => 'nta', 'Nitab4.5_0001918g0050' => 'nta', 'Nitab4.5_0002686g0030' => 'nta', 'Nitab4.5_0003156g0020' => 'nta', 'Nitab4.5_0003383g0040' => 'nta', 'Nitab4.5_0003918g0010' => 'nta', 'Nitab4.5_0006760g0010' => 'nta', 'Nn1g05981' => 'nnu', 'Nn1g06288' => 'nnu', 'Nn3g16371' => 'nnu', 'Nn3g16786' => 'nnu', 'Nn4g22232' => 'nnu', 'Oeu005144.1' => 'oeu', 'Oeu005145.1' => 'oeu', 'Oeu011348.1' => 'oeu', 'Oeu016415.1' => 'oeu', 'Oeu023501.1' => 'oeu', 'Oeu044473.1' => 'oeu', 'Oeu048892.2' => 'oeu', 'Os01g0549200' => 'osa', 'Os02g0469300' => 'osa', 'Os04g0311100' => 'osa', 'Os06g0474900' => 'osa', 'Os10g0181700' => 'osa', 'Os11g0454800' => 'osa', 'Peaxi162Scf00037g00714' => 'pax', 'Peaxi162Scf00084g01217' => 'pax', 'Peaxi162Scf00257g00217' => 'pax', 'Peaxi162Scf00516g00215' => 'pax', 'Peaxi162Scf00689g00123' => 'pax', 'PGR044G2719' => 'pgr', 'PGR083G1360' => 'pgr', 'PGR102G2849' => 'pgr', 'PGR119G2534' => 'pgr', 'PGSC0003DMG400003538' => 'stu', 'PGSC0003DMG400028138' => 'stu', 'PGSC0003DMG400031732' => 'stu', 'PGSC0003DMG400038165' => 'stu', 'Phvul.002G284600' => 'pvu', 'Phvul.003G258200' => 'pvu', 'Phvul.009G176500' => 'pvu', 'Potri.003G167201' => 'ptr', 'Potri.005G118400' => 'ptr', 'Potri.012G089000' => 'ptr', 'Potri.012G102800' => 'ptr', 'Potri.015G079400' => 'ptr', 'Potri.015G100900' => 'ptr', 'Pp3c14_9810' => 'ppa', 'Pp3c15_10450' => 'ppa', 'Pp3c20_19150' => 'ppa', 'Pp3c23_12740' => 'ppa', 'Pp3c23_6310' => 'ppa', 'Pp3c24_3720' => 'ppa', 'Pp3c27_2580' => 'ppa', 'Pp3c9_8990' => 'ppa', 'PRCOL_00002854' => 'pco', 'Prupe.1G221200' => 'ppe', 'Prupe.3G289000' => 'ppe', 'Prupe.5G147000' => 'ppe', 'Prupe.6G157300' => 'ppe', 'Prupe.7G163400' => 'ppe', 'Psat0s2177g0040' => 'psa', 'Psat3g174760' => 'psa', 'Psat3g192160' => 'psa', 'Psat4g058520' => 'psa', 'Psat4g096840' => 'psa', 'Psat7g037320' => 'psa', 'PSO017G1274' => 'pso', 'PSO017G5166' => 'pso', 'PSO063G4558' => 'pso', 'PSO170G4458' => 'pso', 'PSO170G5005' => 'pso', 'PSO210G6156' => 'pso', 'PSO210G6635' => 'pso', 'PSO210G7397' => 'pso', 'PSO210G7700' => 'pso', 'PSO455G0035' => 'pso', 'PSO455G0180' => 'pso', 'PSO478G4515' => 'pso', 'PSO832G1305' => 'pso', 'PSO832G3489' => 'pso', 'QL02p075247' => 'qlo', 'QL03p051148' => 'qlo', 'QL05p010313' => 'qlo', 'QL06p034627' => 'qlo', 'QL10p001889' => 'qlo', 'QL10p010846' => 'qlo', 'RcHm_v2.0_Chr1g0350621' => 'rch', 'RcHm_v2.0_Chr1g0350641' => 'rch', 'RcHm_v2.0_Chr2g0092891' => 'rch', 'RcHm_v2.0_Chr2g0100251' => 'rch', 'RcHm_v2.0_Chr2g0158661' => 'rch', 'RcHm_v2.0_Chr2g0172741' => 'rch', 'RcHm_v2.0_Chr4g0429571' => 'rch', 'RcHm_v2.0_Chr5g0042471' => 'rch', 'RcHm_v2.0_Chr7g0189451' => 'rch', 'Rhsim08G0052000' => 'rsi', 'Rhsim08G0174400' => 'rsi', 'Rhsim08G0193200' => 'rsi', 'Rhsim10G0214800' => 'rsi', 'Rhsim10G0214900' => 'rsi', 'Rhsim10G0215000' => 'rsi', 'Rhsim12G0022900' => 'rsi', 'Rhsim12G0177500' => 'rsi', 'Rhsim12G0177700' => 'rsi', 'Sabra03G0122600' => 'sbr', 'Sabra05G0097400' => 'sbr', 'Sabra12G0064100' => 'sbr', 'Sabra15G0121300' => 'sbr', 'SalBow2G0642' => 'sbo', 'SalBow5G2667' => 'sbo', 'SalBow5G4873' => 'sbo', 'SalBow8G2395' => 'sbo', 'Sc03g0003290' => 'sci', 'Sc10g0010130' => 'sci', 'Sc22g0003650' => 'sci', 'Sed0001603' => 'sed', 'Sed0004259' => 'sed', 'Sed0006789' => 'sed', 'Sed0011838' => 'sed', 'Sed0012964' => 'sed', 'Sed0016383' => 'sed', 'Sed0019010' => 'sed', 'Sed0020188' => 'sed', 'SEGI_04702' => 'sgi', 'SEGI_17231' => 'sgi', 'SEGI_18877' => 'sgi', 'SEGI_25196' => 'sgi', 'SEGI_25515' => 'sgi', 'SEGI_28445' => 'sgi', 'SEGI_37452' => 'sgi', 'SGA_v2.0_scaffold188G40336' => 'sas', 'SGA_v2.0_scaffold228G43247' => 'sas', 'SGA_v2.0_scaffold280G46853' => 'sas', 'SGA_v2.0_scaffold34G13808' => 'sas', 'SGA_v2.0_scaffold40G15576' => 'sas', 'SGA_v2.0_scaffold611G53188' => 'sas', 'SGA_v2.0_scaffold78G25461' => 'sas', 'SGA_v2.0_scaffold90G27888' => 'sas', 'SHI08601' => 'shi', 'SHI08606' => 'shi', 'SHI17117' => 'shi', 'SHI17119' => 'shi', 'SMO118G0201' => 'smo', 'SMO169G0247' => 'smo', 'SMO176G0006' => 'smo', 'SMO176G0015' => 'smo', 'SMO202G0006' => 'smo', 'SMO240G0050' => 'smo', 'SMO286G0009' => 'smo', 'SMO338G0033' => 'smo', 'SMO356G0533' => 'smo', 'SMO364G0382' => 'smo', 'SMO367G0166' => 'smo', 'SMO367G1098' => 'smo', 'Solyc01g009920.3' => 'sly', 'Solyc01g099300.3' => 'sly', 'Solyc02g084700.3' => 'sly', 'Solyc03g097520.3' => 'sly', 'Solyc06g071580.3' => 'sly', 'Solyc10g081760.3' => 'sly', 'Sopen01g005480' => 'spe', 'Sopen01g042850' => 'spe', 'Sopen02g029370' => 'spe', 'Sopen03g028280' => 'spe', 'Sopen06g027870' => 'spe', 'Sopen10g032270' => 'spe', 'Sp5g18180' => 'spa', 'Sp6g12880' => 'spa', 'Sp6g30850' => 'spa', 'Sp7g22960' => 'spa', 'Sp7g34010' => 'spa', 'SpUn1326_0010' => 'spa', 'TAR371G0242' => 'tar', 'TAR622G0638' => 'tar', 'TAR628G1548' => 'tar', 'TAR629G1079' => 'tar', 'TAR629G3413' => 'tar', 'THA.LOC104804249' => 'tha', 'THA.LOC104808315' => 'tha', 'THA.LOC104809238' => 'tha', 'THA.LOC104825484' => 'tha', 'Thecc.01G025500' => 'tca', 'Thecc.03G015800' => 'tca', 'Thecc.03G018000' => 'tca', 'Thecc.03G134800' => 'tca', 'Thecc.04G014700' => 'tca', 'Thhalv10006991m.g' => 'esa', 'Thhalv10012707m.g' => 'esa', 'Thhalv10015739m.g' => 'esa', 'Thhalv10024553m.g' => 'esa', 'Thhalv10024673m.g' => 'esa', 'Thhalv10029187m.g' => 'esa', 'TPR.G12971' => 'tpr', 'TPR.G29396' => 'tpr', 'TPR.G33376' => 'tpr', 'TPR.G35508' => 'tpr', 'TPR.G35516' => 'tpr', 'TPR.G37317' => 'tpr', 'TPR.G37389' => 'tpr', 'TPR.G37523' => 'tpr', 'TPR.G559' => 'tpr', 'TWI14G0070' => 'twi', 'TWI14G0729' => 'twi', 'TWI18G0596' => 'twi', 'TWI39G0780' => 'twi', 'TWI39G0850' => 'twi', 'TWI73G1052' => 'twi', 'unitig_52.g17485' => 'ugi', 'unitig_61.g26355' => 'ugi', 'vmacro01040' => 'vma', 'vmacro16731' => 'vma', 'vmacro18270' => 'vma', 'vmacro19142' => 'vma', 'vmacro19407' => 'vma', 'vmacro19408' => 'vma', 'vmacro21899' => 'vma', 'vmacro21900' => 'vma', 'vmacro21901' => 'vma', 'VMungo0251G0490' => 'vmu', 'VMungo0251G1748' => 'vmu', 'VMungo1309G0421' => 'vmu', 'Zm00001eb086500' => 'zma', 'Zm00001eb150680' => 'zma', 'Zm00001eb162330' => 'zma', 'Zm00001eb203130' => 'zma', 'Zm00001eb369480' => 'zma', 'Zm00001eb382340' => 'zma', 'Zm00001eb416360' => 'zma' ), 'gf_id' => 'HOM05D000902', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000902' ), 'data_identifier' => 'HOM05D000902', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000902', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '663', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02470' => 'bna', 'A01p16260' => 'bna', 'A02p01680' => 'bna', 'A03p16600' => 'bna', 'A03p55660' => 'bna', 'A03p64160' => 'bna', 'A03p64170' => 'bna', 'A08p31900' => 'bna', 'A09p59530' => 'bna', 'A10p08230' => 'bna', 'A10p25090' => 'bna', 'Aa31LG3G7100' => 'aar', 'Aa31LG3G7110' => 'aar', 'Aa31LG6G13160' => 'aar', 'Aa31LG7G10770' => 'aar', 'Aa31LG7G3830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2723' => 'aag', 'Actinidia08045' => 'ach', 'Actinidia08888' => 'ach', 'Actinidia18333' => 'ach', 'Actinidia19334' => 'ach', 'Actinidia25552' => 'ach', 'Actinidia26089' => 'ach', 'Actinidia30615' => 'ach', 'Actinidia30616' => 'ach', 'Actinidia33083' => 'ach', 'Actinidia35762' => 'ach', 'Ah.02g110620' => 'amhyb', 'Ah.11g046390' => 'amhyb', 'AL1G31670' => 'aly', 'AL6G23730' => 'aly', 'AL7G14740' => 'aly', 'AL7G14750' => 'aly', 'AL7G14760' => 'aly', 'AL7G28220' => 'aly', 'AL8G24940' => 'aly', 'Aqoxy3G01665' => 'aox', 'Aqoxy3G02853' => 'aox', 'Aqoxy5G01513' => 'aox', 'Aqoxy5G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8SKA4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ75LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKDA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0LJZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7REX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZP4YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWX7I5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2QKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS0L9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPCD8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q161UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC7XCF' => 'arhy', 'AT1G19100' => 'ath', 'AT4G24970' => 'ath', 'AT4G36270' => 'ath', 'AT4G36280' => 'ath', 'AT4G36290' => 'ath', 'AT5G13130' => 'ath', 'AT5G50780' => 'ath', 'ATR0582G266' => 'atr', 'ATR0661G195' => 'atr', 'ATR1152G031' => 'atr', 'Atru.chr11.2382' => 'acertr', 'Atru.chr12.2337' => 'acertr', 'Atru.chr3.744' => 'acertr', 'Atru.chr6.1870' => 'acertr', 'Atru.chr9.2515' => 'acertr', 'AUR62004120' => 'cqu', 'AUR62005667' => 'cqu', 'AUR62007634' => 'cqu', 'AUR62008186' => 'cqu', 'AUR62008187' => 'cqu', 'AUR62008188' => 'cqu', 'AUR62027954' => 'cqu', 'AUR62028766' => 'cqu', 'AUR62028767' => 'cqu', 'AUR62028768' => 'cqu', 'AUR62028886' => 'cqu', 'AUR62029563' => 'cqu', 'AUR62038832' => 'cqu', 'BcaB01g04149' => 'bca', 'BcaB03g12940' => 'bca', 'BcaB03g13090' => 'bca', 'BcaB03g14466' => 'bca', 'BcaB05g24035' => 'bca', 'BcaC01g06050' => 'bca', 'BcaC04g19148' => 'bca', 'BcaC04g20761' => 'bca', 'BcaC06g32845' => 'bca', 'BcaC07g41274' => 'bca', 'BcaC09g50827' => 'bca', 'BcaNung00741' => 'bca', 'BcaNung00742' => 'bca', 'BcaNung01859' => 'bca', 'BcaNung03985' => 'bca', 'BcaNung03989' => 'bca', 'BcaNung05661' => 'bca', 'BolC1t00257H' => 'bol', 'BolC1t01956H' => 'bol', 'BolC2t06534H' => 'bol', 'BolC3t14334H' => 'bol', 'BolC5t30451H' => 'bol', 'BolC7t45880H' => 'bol', 'BolC7t46586H' => 'bol', 'BolC8t49301H' => 'bol', 'BolC8t51837H' => 'bol', 'BolC9t56822H' => 'bol', 'BolC9t59235H' => 'bol', 'BraA01t00234Z' => 'bra', 'BraA01t01563Z' => 'bra', 'BraA02t05147Z' => 'bra', 'BraA03t10947Z' => 'bra', 'BraA03t14633Z' => 'bra', 'BraA08t35112Z' => 'bra', 'BraA09t41330Z' => 'bra', 'BraA10t44570Z' => 'bra', 'C01p02670' => 'bna', 'C01p20260' => 'bna', 'C02p05890' => 'bna', 'C03p19530' => 'bna', 'C05p17470' => 'bna', 'C07p53900' => 'bna', 'C07p61630' => 'bna', 'C08p16800' => 'bna', 'C08p42810' => 'bna', 'C09p39480' => 'bna', 'C09p63980' => 'bna', 'CAN.G1001.7' => 'can', 'CAN.G1034.55' => 'can', 'CAN.G143.7' => 'can', 'CAN.G3340.1' => 'can', 'CAN.G358.19' => 'can', 'CAN.G373.2' => 'can', 'CAN.G674.16' => 'can', 'CAN.G674.17' => 'can', 'CAN.G674.18' => 'can', 'CAN.G732.2' => 'can', 'CAN.G732.3' => 'can', 'CAN.G993.39' => 'can', 'CANSAT01G2052' => 'cansat', 'CANSAT80G0070' => 'cansat', 'CANSAT80G0483' => 'cansat', 'CANSAT80G0625' => 'cansat', 'CARHR019690' => 'chi', 'CARHR080280' => 'chi', 'CARHR152750' => 'chi', 'CARHR152760' => 'chi', 'CARHR152770' => 'chi', 'CARHR200340' => 'chi', 'CARHR232370' => 'chi', 'CARHR244670' => 'chi', 'CARHR244680' => 'chi', 'CARHR257520' => 'chi', 'Carub.0001s1872' => 'cru', 'Carub.0006s1130' => 'cru', 'Carub.0007s0396' => 'cru', 'Carub.0007s0397' => 'cru', 'Carub.0007s1608' => 'cru', 'Carub.0008s1068' => 'cru', 'Carub.0008s1077' => 'cru', 'Ca_16158_v3' => 'car', 'Ca_17571_v3' => 'car', 'Ca_21936_v3' => 'car', 'Ca_22350_v3' => 'car', 'CBR_g22445' => 'cbr', 'CBR_g26290' => 'cbr', 'Cc04_g09610' => 'ccan', 'Cc04_g12280' => 'ccan', 'Cc07_g10230' => 'ccan', 'CDE02G0093' => 'cde', 'CDE02G0701' => 'cde', 'CDE04G1050' => 'cde', 'CDE05G1833' => 'cde', 'CDE05G3058' => 'cde', 'CDE05G3380' => 'cde', 'CDE06G0536' => 'cde', 'Cfa006923' => 'cfa', 'Cfa009402' => 'cfa', 'Cfa018751' => 'cfa', 'Cfa019164' => 'cfa', 'Cfa022935' => 'cfa', 'Ciclev10019081m.g' => 'ccl', 'Ciclev10025076m.g' => 'ccl', 'Ciclev10030712m.g' => 'ccl', 'Ciclev10033760m.g' => 'ccl', 'CiPaw.05G105600' => 'cil', 'CiPaw.08G136700' => 'cil', 'CiPaw.11G003900' => 'cil', 'CiPaw.11G023700' => 'cil', 'CiPaw.12G003700' => 'cil', 'ClCG06G017100' => 'cla', 'ClCG06G018110' => 'cla', 'ClCG07G008800' => 'cla', 'ClCG07G015330' => 'cla', 'COL.COLO4_13698' => 'col', 'COL.COLO4_16659' => 'col', 'COL.COLO4_21986' => 'col', 'COL.COLO4_24049' => 'col', 'COL.COLO4_29061' => 'col', 'COL.COLO4_29075' => 'col', 'COL.COLO4_30094' => 'col', 'Cpa.g.c33689' => 'cpa', 'Cpa.g.sc108.39' => 'cpa', 'Cpa.g.sc108.41' => 'cpa', 'Cpa.g.sc1163.1' => 'cpa', 'Cpa.g.sc4.155' => 'cpa', 'Cpa.g.sc6.194' => 'cpa', 'CsaV3_1G000340' => 'csa', 'CsaV3_1G001400' => 'csa', 'CsaV3_4G002220' => 'csa', 'CsaV3_4G005370' => 'csa', 'CSS0007487' => 'camsi', 'CSS0008066' => 'camsi', 'CSS0009120' => 'camsi', 'CSS0015512' => 'camsi', 'CSS0022409' => 'camsi', 'CSS0025358' => 'camsi', 'CSS0044547' => 'camsi', 'DCAR_013057' => 'dca', 'DCAR_015058' => 'dca', 'DCAR_016027' => 'dca', 'DCAR_017327' => 'dca', 'DCAR_020743' => 'dca', 'DCAR_026157' => 'dca', 'DCAR_032339' => 'dca', 'DCAR_032340' => 'dca', 'Dinv11200' => 'din', 'Dinv11201' => 'din', 'Dinv20631' => 'din', 'Dinv23182' => 'din', 'Dinv33466' => 'din', 'Dinv33583' => 'din', 'Dinv38565' => 'din', 'Duzib068G0200' => 'dzi', 'Duzib147G0132' => 'dzi', 'Duzib147G0635' => 'dzi', 'Duzib205G1670' => 'dzi', 'Duzib251G0606' => 'dzi', 'ECA232G3336' => 'eca', 'ECA232G3763' => 'eca', 'ECA232G4845' => 'eca', 'ECA234G1607' => 'eca', 'ECA246G0932' => 'eca', 'ECA247G0781' => 'eca', 'ECA247G1932' => 'eca', 'ECA247G2079' => 'eca', 'ECA247G3338' => 'eca', 'ECA247G4115' => 'eca', 'EL10Ac3g06552' => 'bvu', 'EL10Ac5g10721' => 'bvu', 'EL10Ac5g10722' => 'bvu', 'EL10Ac5g10723' => 'bvu', 'EL10Ac5g11361' => 'bvu', 'EL10Ac6g13553' => 'bvu', 'EL10As8g23872' => 'bvu', 'Eucgr.B00250' => 'egr', 'Eucgr.B00251' => 'egr', 'Eucgr.B03533' => 'egr', 'Eucgr.I02381' => 'egr', 'Eucgr.K02700' => 'egr', 'FAN02G0174' => 'fan', 'FAN02G3146' => 'fan', 'FAN04G1672' => 'fan', 'FAN04G2273' => 'fan', 'FAN05G2791' => 'fan', 'FAN05G4035' => 'fan', 'FAN07G0834' => 'fan', 'FAN08G1198' => 'fan', 'FAN09G4182' => 'fan', 'FAN12G0496' => 'fan', 'FAN13G1027' => 'fan', 'FAN13G2951' => 'fan', 'FAN14G0705' => 'fan', 'FAN14G0720' => 'fan', 'FAN17G0201' => 'fan', 'FAN17G2665' => 'fan', 'FAN18G1456' => 'fan', 'FAN18G1525' => 'fan', 'FAN18G3500' => 'fan', 'FAN28G2670' => 'fan', 'FvH4_1g12391' => 'fve', 'FvH4_4g23220' => 'fve', 'FvH4_5g08810' => 'fve', 'FvH4_5g28960' => 'fve', 'FvH4_6g42820' => 'fve', 'FvH4_6g51110' => 'fve', 'Glyma.02G051802' => 'gma', 'Glyma.04G185300' => 'gma', 'Glyma.05G202900' => 'gma', 'Glyma.08G010300' => 'gma', 'Glyma.16G131900' => 'gma', 'Glyma.17G087900' => 'gma', 'Gohir.A07G048600' => 'ghi', 'Gohir.A11G179000' => 'ghi', 'Gohir.A12G140900' => 'ghi', 'Gohir.A12G140950' => 'ghi', 'Gohir.A12G191700' => 'ghi', 'Gohir.A13G086300' => 'ghi', 'Gohir.D07G052900' => 'ghi', 'Gohir.D11G186600' => 'ghi', 'Gohir.D12G145575' => 'ghi', 'Gohir.D12G145650' => 'ghi', 'Gohir.D12G145725' => 'ghi', 'Gohir.D12G194050' => 'ghi', 'Gohir.D13G091800' => 'ghi', 'Gorai.001G055900' => 'gra', 'Gorai.007G198400' => 'gra', 'Gorai.008G157000' => 'gra', 'Gorai.008G157100' => 'gra', 'Gorai.008G208700' => 'gra', 'Gorai.010G138700' => 'gra', 'GSVIVG01000977001' => 'vvi', 'GSVIVG01007708001' => 'vvi', 'GSVIVG01008587001' => 'vvi', 'GSVIVG01018849001' => 'vvi', 'GSVIVG01032432001' => 'vvi', 'HanXRQChr02g0034131' => 'han', 'HanXRQChr02g0035981' => 'han', 'HanXRQChr02g0035991' => 'han', 'HanXRQChr05g0155611' => 'han', 'HanXRQChr05g0155621' => 'han', 'HanXRQChr08g0236501' => 'han', 'HanXRQChr09g0261321' => 'han', 'HanXRQChr09g0272081' => 'han', 'HanXRQChr10g0310741' => 'han', 'HanXRQChr11g0325591' => 'han', 'HanXRQChr12g0385691' => 'han', 'HanXRQChr13g0387801' => 'han', 'HanXRQChr15g0463011' => 'han', 'Haze_03826' => 'cav', 'Haze_03827' => 'cav', 'Haze_07183' => 'cav', 'Haze_07537' => 'cav', 'Haze_07539' => 'cav', 'Haze_12461' => 'cav', 'Haze_16115' => 'cav', 'Haze_16808' => 'cav', 'Haze_18531' => 'cav', 'Hma1.2p1_0046F.1_g026700' => 'hma', 'Hma1.2p1_0046F.1_g026710' => 'hma', 'Hma1.2p1_0168F.1_g074340' => 'hma', 'Hma1.2p1_0266F.1_g107030' => 'hma', 'Hma1.2p1_0266F.1_g107060' => 'hma', 'Hma1.2p1_0275F.1_g110510' => 'hma', 'Hma1.2p1_0592F.1_g185490' => 'hma', 'Hma1.2p1_0592F.1_g185500' => 'hma', 'Hma1.2p1_0592F.1_g185510' => 'hma', 'Hma1.2p1_0592F.1_g185520' => 'hma', 'Hma1.2p1_0592F.1_g185530' => 'hma', 'Hma1.2p1_0818F.1_g223450' => 'hma', 'HPP92_009708' => 'vpl', 'HPP92_009793' => 'vpl', 'HPP92_009796' => 'vpl', 'HPP92_009797' => 'vpl', 'HPP92_014940' => 'vpl', 'HPP92_014988' => 'vpl', 'Hund02463' => 'sun', 'Hund02760' => 'sun', 'Hund05071' => 'sun', 'Hund10108' => 'sun', 'Hund11204' => 'sun', 'Hund14016' => 'sun', 'Hund16464' => 'sun', 'Lalb_Chr09g0333391' => 'lal', 'Lalb_Chr11g0070461' => 'lal', 'Lalb_Chr12g0201671' => 'lal', 'Lalb_Chr13g0297161' => 'lal', 'Lj1g0002823' => 'lja', 'Lj3C1074T6' => 'lonja', 'Lj4A212T28' => 'lonja', 'Lj4g0005516' => 'lja', 'Lj4g0013705' => 'lja', 'Lj4g0027865' => 'lja', 'Lj5C92G16' => 'lonja', 'Lj5C92T12' => 'lonja', 'Lj7C596T3' => 'lonja', 'Lj9A446G59' => 'lonja', 'Lj9A482G21' => 'lonja', 'Lsat_1_v5_gn_1_28261' => 'lsa', 'Lsat_1_v5_gn_1_28281' => 'lsa', 'Lsat_1_v5_gn_1_32721' => 'lsa', 'Lsat_1_v5_gn_4_151760' => 'lsa', 'Lsat_1_v5_gn_4_2120' => 'lsa', 'Lsat_1_v5_gn_4_75761' => 'lsa', 'Lsat_1_v5_gn_5_10920' => 'lsa', 'Manes.02G099900' => 'mes', 'Manes.11G096200' => 'mes', 'Manes.12G007200' => 'mes', 'Manes.14G048300' => 'mes', 'Manes.17G114700' => 'mes', 'Mapoly0002s0070' => 'mpo', 'Mapoly0029s0099' => 'mpo', 'MBI07_g24742_MAGBIO' => 'mbi', 'MBI10_g27988_MAGBIO' => 'mbi', 'MBI11_g13057_MAGBIO' => 'mbi', 'MD02G1137200' => 'mdo', 'MD06G1137200' => 'mdo', 'MD07G1122300' => 'mdo', 'MD09G1078200' => 'mdo', 'MD13G1123700' => 'mdo', 'MD14G1151900' => 'mdo', 'MD17G1030900' => 'mdo', 'MD17G1068200' => 'mdo', 'MD17G1068600' => 'mdo', 'Medtr3g077540' => 'mtr', 'Medtr4g105530' => 'mtr', 'Medtr8g076580' => 'mtr', 'Medtr8g076590' => 'mtr', 'Medtr8g096410' => 'mtr', 'MELO3C016411.2' => 'cme', 'MELO3C017780.2' => 'cme', 'MELO3C022560.2' => 'cme', 'MELO3C026187.2' => 'cme', 'MELO3C026286.2' => 'cme', 'MELO3C032854.2' => 'cme', 'Migut.H02495' => 'egut', 'Migut.I00561' => 'egut', 'Migut.K01015' => 'egut', 'Migut.K01016' => 'egut', 'Migut.L00743' => 'egut', 'Migut.L00744' => 'egut', 'Migut.L00746' => 'egut', 'Migut.L00798' => 'egut', 'Migut.L00799' => 'egut', 'Migut.N02096' => 'egut', 'MSTRG.11259' => 'ama', 'MSTRG.23142' => 'ama', 'MSTRG.2499' => 'ama', 'Nitab4.5_0000003g0730' => 'nta', 'Nitab4.5_0000137g0020' => 'nta', 'Nitab4.5_0000721g0210' => 'nta', 'Nitab4.5_0000723g0050' => 'nta', 'Nitab4.5_0000913g0070' => 'nta', 'Nitab4.5_0001332g0040' => 'nta', 'Nitab4.5_0001771g0050' => 'nta', 'Nitab4.5_0001918g0050' => 'nta', 'Nitab4.5_0002686g0030' => 'nta', 'Nitab4.5_0003156g0020' => 'nta', 'Nitab4.5_0003383g0040' => 'nta', 'Nitab4.5_0003918g0010' => 'nta', 'Nitab4.5_0006760g0010' => 'nta', 'Nn1g05981' => 'nnu', 'Nn1g06288' => 'nnu', 'Nn3g16371' => 'nnu', 'Nn3g16786' => 'nnu', 'Nn4g22232' => 'nnu', 'Oeu005144.1' => 'oeu', 'Oeu005145.1' => 'oeu', 'Oeu011348.1' => 'oeu', 'Oeu016415.1' => 'oeu', 'Oeu023501.1' => 'oeu', 'Oeu044473.1' => 'oeu', 'Oeu048892.2' => 'oeu', 'Os01g0549200' => 'osa', 'Os02g0469300' => 'osa', 'Os04g0311100' => 'osa', 'Os06g0474900' => 'osa', 'Os10g0181700' => 'osa', 'Os11g0454800' => 'osa', 'Peaxi162Scf00037g00714' => 'pax', 'Peaxi162Scf00084g01217' => 'pax', 'Peaxi162Scf00257g00217' => 'pax', 'Peaxi162Scf00516g00215' => 'pax', 'Peaxi162Scf00689g00123' => 'pax', 'PGR044G2719' => 'pgr', 'PGR083G1360' => 'pgr', 'PGR102G2849' => 'pgr', 'PGR119G2534' => 'pgr', 'PGSC0003DMG400003538' => 'stu', 'PGSC0003DMG400028138' => 'stu', 'PGSC0003DMG400031732' => 'stu', 'PGSC0003DMG400038165' => 'stu', 'Phvul.002G284600' => 'pvu', 'Phvul.003G258200' => 'pvu', 'Phvul.009G176500' => 'pvu', 'Potri.003G167201' => 'ptr', 'Potri.005G118400' => 'ptr', 'Potri.012G089000' => 'ptr', 'Potri.012G102800' => 'ptr', 'Potri.015G079400' => 'ptr', 'Potri.015G100900' => 'ptr', 'Pp3c14_9810' => 'ppa', 'Pp3c15_10450' => 'ppa', 'Pp3c20_19150' => 'ppa', 'Pp3c23_12740' => 'ppa', 'Pp3c23_6310' => 'ppa', 'Pp3c24_3720' => 'ppa', 'Pp3c27_2580' => 'ppa', 'Pp3c9_8990' => 'ppa', 'PRCOL_00002854' => 'pco', 'Prupe.1G221200' => 'ppe', 'Prupe.3G289000' => 'ppe', 'Prupe.5G147000' => 'ppe', 'Prupe.6G157300' => 'ppe', 'Prupe.7G163400' => 'ppe', 'Psat0s2177g0040' => 'psa', 'Psat3g174760' => 'psa', 'Psat3g192160' => 'psa', 'Psat4g058520' => 'psa', 'Psat4g096840' => 'psa', 'Psat7g037320' => 'psa', 'PSO017G1274' => 'pso', 'PSO017G5166' => 'pso', 'PSO063G4558' => 'pso', 'PSO170G4458' => 'pso', 'PSO170G5005' => 'pso', 'PSO210G6156' => 'pso', 'PSO210G6635' => 'pso', 'PSO210G7397' => 'pso', 'PSO210G7700' => 'pso', 'PSO455G0035' => 'pso', 'PSO455G0180' => 'pso', 'PSO478G4515' => 'pso', 'PSO832G1305' => 'pso', 'PSO832G3489' => 'pso', 'QL02p075247' => 'qlo', 'QL03p051148' => 'qlo', 'QL05p010313' => 'qlo', 'QL06p034627' => 'qlo', 'QL10p001889' => 'qlo', 'QL10p010846' => 'qlo', 'RcHm_v2.0_Chr1g0350621' => 'rch', 'RcHm_v2.0_Chr1g0350641' => 'rch', 'RcHm_v2.0_Chr2g0092891' => 'rch', 'RcHm_v2.0_Chr2g0100251' => 'rch', 'RcHm_v2.0_Chr2g0158661' => 'rch', 'RcHm_v2.0_Chr2g0172741' => 'rch', 'RcHm_v2.0_Chr4g0429571' => 'rch', 'RcHm_v2.0_Chr5g0042471' => 'rch', 'RcHm_v2.0_Chr7g0189451' => 'rch', 'Rhsim08G0052000' => 'rsi', 'Rhsim08G0174400' => 'rsi', 'Rhsim08G0193200' => 'rsi', 'Rhsim10G0214800' => 'rsi', 'Rhsim10G0214900' => 'rsi', 'Rhsim10G0215000' => 'rsi', 'Rhsim12G0022900' => 'rsi', 'Rhsim12G0177500' => 'rsi', 'Rhsim12G0177700' => 'rsi', 'Sabra03G0122600' => 'sbr', 'Sabra05G0097400' => 'sbr', 'Sabra12G0064100' => 'sbr', 'Sabra15G0121300' => 'sbr', 'SalBow2G0642' => 'sbo', 'SalBow5G2667' => 'sbo', 'SalBow5G4873' => 'sbo', 'SalBow8G2395' => 'sbo', 'Sc03g0003290' => 'sci', 'Sc10g0010130' => 'sci', 'Sc22g0003650' => 'sci', 'Sed0001603' => 'sed', 'Sed0004259' => 'sed', 'Sed0006789' => 'sed', 'Sed0011838' => 'sed', 'Sed0012964' => 'sed', 'Sed0016383' => 'sed', 'Sed0019010' => 'sed', 'Sed0020188' => 'sed', 'SEGI_04702' => 'sgi', 'SEGI_17231' => 'sgi', 'SEGI_18877' => 'sgi', 'SEGI_25196' => 'sgi', 'SEGI_25515' => 'sgi', 'SEGI_28445' => 'sgi', 'SEGI_37452' => 'sgi', 'SGA_v2.0_scaffold188G40336' => 'sas', 'SGA_v2.0_scaffold228G43247' => 'sas', 'SGA_v2.0_scaffold280G46853' => 'sas', 'SGA_v2.0_scaffold34G13808' => 'sas', 'SGA_v2.0_scaffold40G15576' => 'sas', 'SGA_v2.0_scaffold611G53188' => 'sas', 'SGA_v2.0_scaffold78G25461' => 'sas', 'SGA_v2.0_scaffold90G27888' => 'sas', 'SHI08601' => 'shi', 'SHI08606' => 'shi', 'SHI17117' => 'shi', 'SHI17119' => 'shi', 'SMO118G0201' => 'smo', 'SMO169G0247' => 'smo', 'SMO176G0006' => 'smo', 'SMO176G0015' => 'smo', 'SMO202G0006' => 'smo', 'SMO240G0050' => 'smo', 'SMO286G0009' => 'smo', 'SMO338G0033' => 'smo', 'SMO356G0533' => 'smo', 'SMO364G0382' => 'smo', 'SMO367G0166' => 'smo', 'SMO367G1098' => 'smo', 'Solyc01g009920.3' => 'sly', 'Solyc01g099300.3' => 'sly', 'Solyc02g084700.3' => 'sly', 'Solyc03g097520.3' => 'sly', 'Solyc06g071580.3' => 'sly', 'Solyc10g081760.3' => 'sly', 'Sopen01g005480' => 'spe', 'Sopen01g042850' => 'spe', 'Sopen02g029370' => 'spe', 'Sopen03g028280' => 'spe', 'Sopen06g027870' => 'spe', 'Sopen10g032270' => 'spe', 'Sp5g18180' => 'spa', 'Sp6g12880' => 'spa', 'Sp6g30850' => 'spa', 'Sp7g22960' => 'spa', 'Sp7g34010' => 'spa', 'SpUn1326_0010' => 'spa', 'TAR371G0242' => 'tar', 'TAR622G0638' => 'tar', 'TAR628G1548' => 'tar', 'TAR629G1079' => 'tar', 'TAR629G3413' => 'tar', 'THA.LOC104804249' => 'tha', 'THA.LOC104808315' => 'tha', 'THA.LOC104809238' => 'tha', 'THA.LOC104825484' => 'tha', 'Thecc.01G025500' => 'tca', 'Thecc.03G015800' => 'tca', 'Thecc.03G018000' => 'tca', 'Thecc.03G134800' => 'tca', 'Thecc.04G014700' => 'tca', 'Thhalv10006991m.g' => 'esa', 'Thhalv10012707m.g' => 'esa', 'Thhalv10015739m.g' => 'esa', 'Thhalv10024553m.g' => 'esa', 'Thhalv10024673m.g' => 'esa', 'Thhalv10029187m.g' => 'esa', 'TPR.G12971' => 'tpr', 'TPR.G29396' => 'tpr', 'TPR.G33376' => 'tpr', 'TPR.G35508' => 'tpr', 'TPR.G35516' => 'tpr', 'TPR.G37317' => 'tpr', 'TPR.G37389' => 'tpr', 'TPR.G37523' => 'tpr', 'TPR.G559' => 'tpr', 'TWI14G0070' => 'twi', 'TWI14G0729' => 'twi', 'TWI18G0596' => 'twi', 'TWI39G0780' => 'twi', 'TWI39G0850' => 'twi', 'TWI73G1052' => 'twi', 'unitig_52.g17485' => 'ugi', 'unitig_61.g26355' => 'ugi', 'vmacro01040' => 'vma', 'vmacro16731' => 'vma', 'vmacro18270' => 'vma', 'vmacro19142' => 'vma', 'vmacro19407' => 'vma', 'vmacro19408' => 'vma', 'vmacro21899' => 'vma', 'vmacro21900' => 'vma', 'vmacro21901' => 'vma', 'VMungo0251G0490' => 'vmu', 'VMungo0251G1748' => 'vmu', 'VMungo1309G0421' => 'vmu', 'Zm00001eb086500' => 'zma', 'Zm00001eb150680' => 'zma', 'Zm00001eb162330' => 'zma', 'Zm00001eb203130' => 'zma', 'Zm00001eb369480' => 'zma', 'Zm00001eb382340' => 'zma', 'Zm00001eb416360' => 'zma' ) $gf_id = 'HOM05D000902' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000902' ) $data_identifier = 'HOM05D000902' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 13, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 10, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 6, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 9, 'hma' => (int) 12, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 4, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 6, 'ppa' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 6, 'rch' => (int) 9, 'rsi' => (int) 9, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 12, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 3, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416360' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000902', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '663', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02470' => 'bna', 'A01p16260' => 'bna', 'A02p01680' => 'bna', 'A03p16600' => 'bna', 'A03p55660' => 'bna', 'A03p64160' => 'bna', 'A03p64170' => 'bna', 'A08p31900' => 'bna', 'A09p59530' => 'bna', 'A10p08230' => 'bna', 'A10p25090' => 'bna', 'Aa31LG3G7100' => 'aar', 'Aa31LG3G7110' => 'aar', 'Aa31LG6G13160' => 'aar', 'Aa31LG7G10770' => 'aar', 'Aa31LG7G3830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2723' => 'aag', 'Actinidia08045' => 'ach', 'Actinidia08888' => 'ach', 'Actinidia18333' => 'ach', 'Actinidia19334' => 'ach', 'Actinidia25552' => 'ach', 'Actinidia26089' => 'ach', 'Actinidia30615' => 'ach', 'Actinidia30616' => 'ach', 'Actinidia33083' => 'ach', 'Actinidia35762' => 'ach', 'Ah.02g110620' => 'amhyb', 'Ah.11g046390' => 'amhyb', 'AL1G31670' => 'aly', 'AL6G23730' => 'aly', 'AL7G14740' => 'aly', 'AL7G14750' => 'aly', 'AL7G14760' => 'aly', 'AL7G28220' => 'aly', 'AL8G24940' => 'aly', 'Aqoxy3G01665' => 'aox', 'Aqoxy3G02853' => 'aox', 'Aqoxy5G01513' => 'aox', 'Aqoxy5G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8SKA4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ75LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKDA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0LJZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7REX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZP4YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWX7I5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2QKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS0L9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPCD8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q161UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC7XCF' => 'arhy', 'AT1G19100' => 'ath', 'AT4G24970' => 'ath', 'AT4G36270' => 'ath', 'AT4G36280' => 'ath', 'AT4G36290' => 'ath', 'AT5G13130' => 'ath', 'AT5G50780' => 'ath', 'ATR0582G266' => 'atr', 'ATR0661G195' => 'atr', 'ATR1152G031' => 'atr', 'Atru.chr11.2382' => 'acertr', 'Atru.chr12.2337' => 'acertr', 'Atru.chr3.744' => 'acertr', 'Atru.chr6.1870' => 'acertr', 'Atru.chr9.2515' => 'acertr', 'AUR62004120' => 'cqu', 'AUR62005667' => 'cqu', 'AUR62007634' => 'cqu', 'AUR62008186' => 'cqu', 'AUR62008187' => 'cqu', 'AUR62008188' => 'cqu', 'AUR62027954' => 'cqu', 'AUR62028766' => 'cqu', 'AUR62028767' => 'cqu', 'AUR62028768' => 'cqu', 'AUR62028886' => 'cqu', 'AUR62029563' => 'cqu', 'AUR62038832' => 'cqu', 'BcaB01g04149' => 'bca', 'BcaB03g12940' => 'bca', 'BcaB03g13090' => 'bca', 'BcaB03g14466' => 'bca', 'BcaB05g24035' => 'bca', 'BcaC01g06050' => 'bca', 'BcaC04g19148' => 'bca', 'BcaC04g20761' => 'bca', 'BcaC06g32845' => 'bca', 'BcaC07g41274' => 'bca', 'BcaC09g50827' => 'bca', 'BcaNung00741' => 'bca', 'BcaNung00742' => 'bca', 'BcaNung01859' => 'bca', 'BcaNung03985' => 'bca', 'BcaNung03989' => 'bca', 'BcaNung05661' => 'bca', 'BolC1t00257H' => 'bol', 'BolC1t01956H' => 'bol', 'BolC2t06534H' => 'bol', 'BolC3t14334H' => 'bol', 'BolC5t30451H' => 'bol', 'BolC7t45880H' => 'bol', 'BolC7t46586H' => 'bol', 'BolC8t49301H' => 'bol', 'BolC8t51837H' => 'bol', 'BolC9t56822H' => 'bol', 'BolC9t59235H' => 'bol', 'BraA01t00234Z' => 'bra', 'BraA01t01563Z' => 'bra', 'BraA02t05147Z' => 'bra', 'BraA03t10947Z' => 'bra', 'BraA03t14633Z' => 'bra', 'BraA08t35112Z' => 'bra', 'BraA09t41330Z' => 'bra', 'BraA10t44570Z' => 'bra', 'C01p02670' => 'bna', 'C01p20260' => 'bna', 'C02p05890' => 'bna', 'C03p19530' => 'bna', 'C05p17470' => 'bna', 'C07p53900' => 'bna', 'C07p61630' => 'bna', 'C08p16800' => 'bna', 'C08p42810' => 'bna', 'C09p39480' => 'bna', 'C09p63980' => 'bna', 'CAN.G1001.7' => 'can', 'CAN.G1034.55' => 'can', 'CAN.G143.7' => 'can', 'CAN.G3340.1' => 'can', 'CAN.G358.19' => 'can', 'CAN.G373.2' => 'can', 'CAN.G674.16' => 'can', 'CAN.G674.17' => 'can', 'CAN.G674.18' => 'can', 'CAN.G732.2' => 'can', 'CAN.G732.3' => 'can', 'CAN.G993.39' => 'can', 'CANSAT01G2052' => 'cansat', 'CANSAT80G0070' => 'cansat', 'CANSAT80G0483' => 'cansat', 'CANSAT80G0625' => 'cansat', 'CARHR019690' => 'chi', 'CARHR080280' => 'chi', 'CARHR152750' => 'chi', 'CARHR152760' => 'chi', 'CARHR152770' => 'chi', 'CARHR200340' => 'chi', 'CARHR232370' => 'chi', 'CARHR244670' => 'chi', 'CARHR244680' => 'chi', 'CARHR257520' => 'chi', 'Carub.0001s1872' => 'cru', 'Carub.0006s1130' => 'cru', 'Carub.0007s0396' => 'cru', 'Carub.0007s0397' => 'cru', 'Carub.0007s1608' => 'cru', 'Carub.0008s1068' => 'cru', 'Carub.0008s1077' => 'cru', 'Ca_16158_v3' => 'car', 'Ca_17571_v3' => 'car', 'Ca_21936_v3' => 'car', 'Ca_22350_v3' => 'car', 'CBR_g22445' => 'cbr', 'CBR_g26290' => 'cbr', 'Cc04_g09610' => 'ccan', 'Cc04_g12280' => 'ccan', 'Cc07_g10230' => 'ccan', 'CDE02G0093' => 'cde', 'CDE02G0701' => 'cde', 'CDE04G1050' => 'cde', 'CDE05G1833' => 'cde', 'CDE05G3058' => 'cde', 'CDE05G3380' => 'cde', 'CDE06G0536' => 'cde', 'Cfa006923' => 'cfa', 'Cfa009402' => 'cfa', 'Cfa018751' => 'cfa', 'Cfa019164' => 'cfa', 'Cfa022935' => 'cfa', 'Ciclev10019081m.g' => 'ccl', 'Ciclev10025076m.g' => 'ccl', 'Ciclev10030712m.g' => 'ccl', 'Ciclev10033760m.g' => 'ccl', 'CiPaw.05G105600' => 'cil', 'CiPaw.08G136700' => 'cil', 'CiPaw.11G003900' => 'cil', 'CiPaw.11G023700' => 'cil', 'CiPaw.12G003700' => 'cil', 'ClCG06G017100' => 'cla', 'ClCG06G018110' => 'cla', 'ClCG07G008800' => 'cla', 'ClCG07G015330' => 'cla', 'COL.COLO4_13698' => 'col', 'COL.COLO4_16659' => 'col', 'COL.COLO4_21986' => 'col', 'COL.COLO4_24049' => 'col', 'COL.COLO4_29061' => 'col', 'COL.COLO4_29075' => 'col', 'COL.COLO4_30094' => 'col', 'Cpa.g.c33689' => 'cpa', 'Cpa.g.sc108.39' => 'cpa', 'Cpa.g.sc108.41' => 'cpa', 'Cpa.g.sc1163.1' => 'cpa', 'Cpa.g.sc4.155' => 'cpa', 'Cpa.g.sc6.194' => 'cpa', 'CsaV3_1G000340' => 'csa', 'CsaV3_1G001400' => 'csa', 'CsaV3_4G002220' => 'csa', 'CsaV3_4G005370' => 'csa', 'CSS0007487' => 'camsi', 'CSS0008066' => 'camsi', 'CSS0009120' => 'camsi', 'CSS0015512' => 'camsi', 'CSS0022409' => 'camsi', 'CSS0025358' => 'camsi', 'CSS0044547' => 'camsi', 'DCAR_013057' => 'dca', 'DCAR_015058' => 'dca', 'DCAR_016027' => 'dca', 'DCAR_017327' => 'dca', 'DCAR_020743' => 'dca', 'DCAR_026157' => 'dca', 'DCAR_032339' => 'dca', 'DCAR_032340' => 'dca', 'Dinv11200' => 'din', 'Dinv11201' => 'din', 'Dinv20631' => 'din', 'Dinv23182' => 'din', 'Dinv33466' => 'din', 'Dinv33583' => 'din', 'Dinv38565' => 'din', 'Duzib068G0200' => 'dzi', 'Duzib147G0132' => 'dzi', 'Duzib147G0635' => 'dzi', 'Duzib205G1670' => 'dzi', 'Duzib251G0606' => 'dzi', 'ECA232G3336' => 'eca', 'ECA232G3763' => 'eca', 'ECA232G4845' => 'eca', 'ECA234G1607' => 'eca', 'ECA246G0932' => 'eca', 'ECA247G0781' => 'eca', 'ECA247G1932' => 'eca', 'ECA247G2079' => 'eca', 'ECA247G3338' => 'eca', 'ECA247G4115' => 'eca', 'EL10Ac3g06552' => 'bvu', 'EL10Ac5g10721' => 'bvu', 'EL10Ac5g10722' => 'bvu', 'EL10Ac5g10723' => 'bvu', 'EL10Ac5g11361' => 'bvu', 'EL10Ac6g13553' => 'bvu', 'EL10As8g23872' => 'bvu', 'Eucgr.B00250' => 'egr', 'Eucgr.B00251' => 'egr', 'Eucgr.B03533' => 'egr', 'Eucgr.I02381' => 'egr', 'Eucgr.K02700' => 'egr', 'FAN02G0174' => 'fan', 'FAN02G3146' => 'fan', 'FAN04G1672' => 'fan', 'FAN04G2273' => 'fan', 'FAN05G2791' => 'fan', 'FAN05G4035' => 'fan', 'FAN07G0834' => 'fan', 'FAN08G1198' => 'fan', 'FAN09G4182' => 'fan', 'FAN12G0496' => 'fan', 'FAN13G1027' => 'fan', 'FAN13G2951' => 'fan', 'FAN14G0705' => 'fan', 'FAN14G0720' => 'fan', 'FAN17G0201' => 'fan', 'FAN17G2665' => 'fan', 'FAN18G1456' => 'fan', 'FAN18G1525' => 'fan', 'FAN18G3500' => 'fan', 'FAN28G2670' => 'fan', 'FvH4_1g12391' => 'fve', 'FvH4_4g23220' => 'fve', 'FvH4_5g08810' => 'fve', 'FvH4_5g28960' => 'fve', 'FvH4_6g42820' => 'fve', 'FvH4_6g51110' => 'fve', 'Glyma.02G051802' => 'gma', 'Glyma.04G185300' => 'gma', 'Glyma.05G202900' => 'gma', 'Glyma.08G010300' => 'gma', 'Glyma.16G131900' => 'gma', 'Glyma.17G087900' => 'gma', 'Gohir.A07G048600' => 'ghi', 'Gohir.A11G179000' => 'ghi', 'Gohir.A12G140900' => 'ghi', 'Gohir.A12G140950' => 'ghi', 'Gohir.A12G191700' => 'ghi', 'Gohir.A13G086300' => 'ghi', 'Gohir.D07G052900' => 'ghi', 'Gohir.D11G186600' => 'ghi', 'Gohir.D12G145575' => 'ghi', 'Gohir.D12G145650' => 'ghi', 'Gohir.D12G145725' => 'ghi', 'Gohir.D12G194050' => 'ghi', 'Gohir.D13G091800' => 'ghi', 'Gorai.001G055900' => 'gra', 'Gorai.007G198400' => 'gra', 'Gorai.008G157000' => 'gra', 'Gorai.008G157100' => 'gra', 'Gorai.008G208700' => 'gra', 'Gorai.010G138700' => 'gra', 'GSVIVG01000977001' => 'vvi', 'GSVIVG01007708001' => 'vvi', 'GSVIVG01008587001' => 'vvi', 'GSVIVG01018849001' => 'vvi', 'GSVIVG01032432001' => 'vvi', 'HanXRQChr02g0034131' => 'han', 'HanXRQChr02g0035981' => 'han', 'HanXRQChr02g0035991' => 'han', 'HanXRQChr05g0155611' => 'han', 'HanXRQChr05g0155621' => 'han', 'HanXRQChr08g0236501' => 'han', 'HanXRQChr09g0261321' => 'han', 'HanXRQChr09g0272081' => 'han', 'HanXRQChr10g0310741' => 'han', 'HanXRQChr11g0325591' => 'han', 'HanXRQChr12g0385691' => 'han', 'HanXRQChr13g0387801' => 'han', 'HanXRQChr15g0463011' => 'han', 'Haze_03826' => 'cav', 'Haze_03827' => 'cav', 'Haze_07183' => 'cav', 'Haze_07537' => 'cav', 'Haze_07539' => 'cav', 'Haze_12461' => 'cav', 'Haze_16115' => 'cav', 'Haze_16808' => 'cav', 'Haze_18531' => 'cav', 'Hma1.2p1_0046F.1_g026700' => 'hma', 'Hma1.2p1_0046F.1_g026710' => 'hma', 'Hma1.2p1_0168F.1_g074340' => 'hma', 'Hma1.2p1_0266F.1_g107030' => 'hma', 'Hma1.2p1_0266F.1_g107060' => 'hma', 'Hma1.2p1_0275F.1_g110510' => 'hma', 'Hma1.2p1_0592F.1_g185490' => 'hma', 'Hma1.2p1_0592F.1_g185500' => 'hma', 'Hma1.2p1_0592F.1_g185510' => 'hma', 'Hma1.2p1_0592F.1_g185520' => 'hma', 'Hma1.2p1_0592F.1_g185530' => 'hma', 'Hma1.2p1_0818F.1_g223450' => 'hma', 'HPP92_009708' => 'vpl', 'HPP92_009793' => 'vpl', 'HPP92_009796' => 'vpl', 'HPP92_009797' => 'vpl', 'HPP92_014940' => 'vpl', 'HPP92_014988' => 'vpl', 'Hund02463' => 'sun', 'Hund02760' => 'sun', 'Hund05071' => 'sun', 'Hund10108' => 'sun', 'Hund11204' => 'sun', 'Hund14016' => 'sun', 'Hund16464' => 'sun', 'Lalb_Chr09g0333391' => 'lal', 'Lalb_Chr11g0070461' => 'lal', 'Lalb_Chr12g0201671' => 'lal', 'Lalb_Chr13g0297161' => 'lal', 'Lj1g0002823' => 'lja', 'Lj3C1074T6' => 'lonja', 'Lj4A212T28' => 'lonja', 'Lj4g0005516' => 'lja', 'Lj4g0013705' => 'lja', 'Lj4g0027865' => 'lja', 'Lj5C92G16' => 'lonja', 'Lj5C92T12' => 'lonja', 'Lj7C596T3' => 'lonja', 'Lj9A446G59' => 'lonja', 'Lj9A482G21' => 'lonja', 'Lsat_1_v5_gn_1_28261' => 'lsa', 'Lsat_1_v5_gn_1_28281' => 'lsa', 'Lsat_1_v5_gn_1_32721' => 'lsa', 'Lsat_1_v5_gn_4_151760' => 'lsa', 'Lsat_1_v5_gn_4_2120' => 'lsa', 'Lsat_1_v5_gn_4_75761' => 'lsa', 'Lsat_1_v5_gn_5_10920' => 'lsa', 'Manes.02G099900' => 'mes', 'Manes.11G096200' => 'mes', 'Manes.12G007200' => 'mes', 'Manes.14G048300' => 'mes', 'Manes.17G114700' => 'mes', 'Mapoly0002s0070' => 'mpo', 'Mapoly0029s0099' => 'mpo', 'MBI07_g24742_MAGBIO' => 'mbi', 'MBI10_g27988_MAGBIO' => 'mbi', 'MBI11_g13057_MAGBIO' => 'mbi', 'MD02G1137200' => 'mdo', 'MD06G1137200' => 'mdo', 'MD07G1122300' => 'mdo', 'MD09G1078200' => 'mdo', 'MD13G1123700' => 'mdo', 'MD14G1151900' => 'mdo', 'MD17G1030900' => 'mdo', 'MD17G1068200' => 'mdo', 'MD17G1068600' => 'mdo', 'Medtr3g077540' => 'mtr', 'Medtr4g105530' => 'mtr', 'Medtr8g076580' => 'mtr', 'Medtr8g076590' => 'mtr', 'Medtr8g096410' => 'mtr', 'MELO3C016411.2' => 'cme', 'MELO3C017780.2' => 'cme', 'MELO3C022560.2' => 'cme', 'MELO3C026187.2' => 'cme', 'MELO3C026286.2' => 'cme', 'MELO3C032854.2' => 'cme', 'Migut.H02495' => 'egut', 'Migut.I00561' => 'egut', 'Migut.K01015' => 'egut', 'Migut.K01016' => 'egut', 'Migut.L00743' => 'egut', 'Migut.L00744' => 'egut', 'Migut.L00746' => 'egut', 'Migut.L00798' => 'egut', 'Migut.L00799' => 'egut', 'Migut.N02096' => 'egut', 'MSTRG.11259' => 'ama', 'MSTRG.23142' => 'ama', 'MSTRG.2499' => 'ama', 'Nitab4.5_0000003g0730' => 'nta', 'Nitab4.5_0000137g0020' => 'nta', 'Nitab4.5_0000721g0210' => 'nta', 'Nitab4.5_0000723g0050' => 'nta', 'Nitab4.5_0000913g0070' => 'nta', 'Nitab4.5_0001332g0040' => 'nta', 'Nitab4.5_0001771g0050' => 'nta', 'Nitab4.5_0001918g0050' => 'nta', 'Nitab4.5_0002686g0030' => 'nta', 'Nitab4.5_0003156g0020' => 'nta', 'Nitab4.5_0003383g0040' => 'nta', 'Nitab4.5_0003918g0010' => 'nta', 'Nitab4.5_0006760g0010' => 'nta', 'Nn1g05981' => 'nnu', 'Nn1g06288' => 'nnu', 'Nn3g16371' => 'nnu', 'Nn3g16786' => 'nnu', 'Nn4g22232' => 'nnu', 'Oeu005144.1' => 'oeu', 'Oeu005145.1' => 'oeu', 'Oeu011348.1' => 'oeu', 'Oeu016415.1' => 'oeu', 'Oeu023501.1' => 'oeu', 'Oeu044473.1' => 'oeu', 'Oeu048892.2' => 'oeu', 'Os01g0549200' => 'osa', 'Os02g0469300' => 'osa', 'Os04g0311100' => 'osa', 'Os06g0474900' => 'osa', 'Os10g0181700' => 'osa', 'Os11g0454800' => 'osa', 'Peaxi162Scf00037g00714' => 'pax', 'Peaxi162Scf00084g01217' => 'pax', 'Peaxi162Scf00257g00217' => 'pax', 'Peaxi162Scf00516g00215' => 'pax', 'Peaxi162Scf00689g00123' => 'pax', 'PGR044G2719' => 'pgr', 'PGR083G1360' => 'pgr', 'PGR102G2849' => 'pgr', 'PGR119G2534' => 'pgr', 'PGSC0003DMG400003538' => 'stu', 'PGSC0003DMG400028138' => 'stu', 'PGSC0003DMG400031732' => 'stu', 'PGSC0003DMG400038165' => 'stu', 'Phvul.002G284600' => 'pvu', 'Phvul.003G258200' => 'pvu', 'Phvul.009G176500' => 'pvu', 'Potri.003G167201' => 'ptr', 'Potri.005G118400' => 'ptr', 'Potri.012G089000' => 'ptr', 'Potri.012G102800' => 'ptr', 'Potri.015G079400' => 'ptr', 'Potri.015G100900' => 'ptr', 'Pp3c14_9810' => 'ppa', 'Pp3c15_10450' => 'ppa', 'Pp3c20_19150' => 'ppa', 'Pp3c23_12740' => 'ppa', 'Pp3c23_6310' => 'ppa', 'Pp3c24_3720' => 'ppa', 'Pp3c27_2580' => 'ppa', 'Pp3c9_8990' => 'ppa', 'PRCOL_00002854' => 'pco', 'Prupe.1G221200' => 'ppe', 'Prupe.3G289000' => 'ppe', 'Prupe.5G147000' => 'ppe', 'Prupe.6G157300' => 'ppe', 'Prupe.7G163400' => 'ppe', 'Psat0s2177g0040' => 'psa', 'Psat3g174760' => 'psa', 'Psat3g192160' => 'psa', 'Psat4g058520' => 'psa', 'Psat4g096840' => 'psa', 'Psat7g037320' => 'psa', 'PSO017G1274' => 'pso', 'PSO017G5166' => 'pso', 'PSO063G4558' => 'pso', 'PSO170G4458' => 'pso', 'PSO170G5005' => 'pso', 'PSO210G6156' => 'pso', 'PSO210G6635' => 'pso', 'PSO210G7397' => 'pso', 'PSO210G7700' => 'pso', 'PSO455G0035' => 'pso', 'PSO455G0180' => 'pso', 'PSO478G4515' => 'pso', 'PSO832G1305' => 'pso', 'PSO832G3489' => 'pso', 'QL02p075247' => 'qlo', 'QL03p051148' => 'qlo', 'QL05p010313' => 'qlo', 'QL06p034627' => 'qlo', 'QL10p001889' => 'qlo', 'QL10p010846' => 'qlo', 'RcHm_v2.0_Chr1g0350621' => 'rch', 'RcHm_v2.0_Chr1g0350641' => 'rch', 'RcHm_v2.0_Chr2g0092891' => 'rch', 'RcHm_v2.0_Chr2g0100251' => 'rch', 'RcHm_v2.0_Chr2g0158661' => 'rch', 'RcHm_v2.0_Chr2g0172741' => 'rch', 'RcHm_v2.0_Chr4g0429571' => 'rch', 'RcHm_v2.0_Chr5g0042471' => 'rch', 'RcHm_v2.0_Chr7g0189451' => 'rch', 'Rhsim08G0052000' => 'rsi', 'Rhsim08G0174400' => 'rsi', 'Rhsim08G0193200' => 'rsi', 'Rhsim10G0214800' => 'rsi', 'Rhsim10G0214900' => 'rsi', 'Rhsim10G0215000' => 'rsi', 'Rhsim12G0022900' => 'rsi', 'Rhsim12G0177500' => 'rsi', 'Rhsim12G0177700' => 'rsi', 'Sabra03G0122600' => 'sbr', 'Sabra05G0097400' => 'sbr', 'Sabra12G0064100' => 'sbr', 'Sabra15G0121300' => 'sbr', 'SalBow2G0642' => 'sbo', 'SalBow5G2667' => 'sbo', 'SalBow5G4873' => 'sbo', 'SalBow8G2395' => 'sbo', 'Sc03g0003290' => 'sci', 'Sc10g0010130' => 'sci', 'Sc22g0003650' => 'sci', 'Sed0001603' => 'sed', 'Sed0004259' => 'sed', 'Sed0006789' => 'sed', 'Sed0011838' => 'sed', 'Sed0012964' => 'sed', 'Sed0016383' => 'sed', 'Sed0019010' => 'sed', 'Sed0020188' => 'sed', 'SEGI_04702' => 'sgi', 'SEGI_17231' => 'sgi', 'SEGI_18877' => 'sgi', 'SEGI_25196' => 'sgi', 'SEGI_25515' => 'sgi', 'SEGI_28445' => 'sgi', 'SEGI_37452' => 'sgi', 'SGA_v2.0_scaffold188G40336' => 'sas', 'SGA_v2.0_scaffold228G43247' => 'sas', 'SGA_v2.0_scaffold280G46853' => 'sas', 'SGA_v2.0_scaffold34G13808' => 'sas', 'SGA_v2.0_scaffold40G15576' => 'sas', 'SGA_v2.0_scaffold611G53188' => 'sas', 'SGA_v2.0_scaffold78G25461' => 'sas', 'SGA_v2.0_scaffold90G27888' => 'sas', 'SHI08601' => 'shi', 'SHI08606' => 'shi', 'SHI17117' => 'shi', 'SHI17119' => 'shi', 'SMO118G0201' => 'smo', 'SMO169G0247' => 'smo', 'SMO176G0006' => 'smo', 'SMO176G0015' => 'smo', 'SMO202G0006' => 'smo', 'SMO240G0050' => 'smo', 'SMO286G0009' => 'smo', 'SMO338G0033' => 'smo', 'SMO356G0533' => 'smo', 'SMO364G0382' => 'smo', 'SMO367G0166' => 'smo', 'SMO367G1098' => 'smo', 'Solyc01g009920.3' => 'sly', 'Solyc01g099300.3' => 'sly', 'Solyc02g084700.3' => 'sly', 'Solyc03g097520.3' => 'sly', 'Solyc06g071580.3' => 'sly', 'Solyc10g081760.3' => 'sly', 'Sopen01g005480' => 'spe', 'Sopen01g042850' => 'spe', 'Sopen02g029370' => 'spe', 'Sopen03g028280' => 'spe', 'Sopen06g027870' => 'spe', 'Sopen10g032270' => 'spe', 'Sp5g18180' => 'spa', 'Sp6g12880' => 'spa', 'Sp6g30850' => 'spa', 'Sp7g22960' => 'spa', 'Sp7g34010' => 'spa', 'SpUn1326_0010' => 'spa', 'TAR371G0242' => 'tar', 'TAR622G0638' => 'tar', 'TAR628G1548' => 'tar', 'TAR629G1079' => 'tar', 'TAR629G3413' => 'tar', 'THA.LOC104804249' => 'tha', 'THA.LOC104808315' => 'tha', 'THA.LOC104809238' => 'tha', 'THA.LOC104825484' => 'tha', 'Thecc.01G025500' => 'tca', 'Thecc.03G015800' => 'tca', 'Thecc.03G018000' => 'tca', 'Thecc.03G134800' => 'tca', 'Thecc.04G014700' => 'tca', 'Thhalv10006991m.g' => 'esa', 'Thhalv10012707m.g' => 'esa', 'Thhalv10015739m.g' => 'esa', 'Thhalv10024553m.g' => 'esa', 'Thhalv10024673m.g' => 'esa', 'Thhalv10029187m.g' => 'esa', 'TPR.G12971' => 'tpr', 'TPR.G29396' => 'tpr', 'TPR.G33376' => 'tpr', 'TPR.G35508' => 'tpr', 'TPR.G35516' => 'tpr', 'TPR.G37317' => 'tpr', 'TPR.G37389' => 'tpr', 'TPR.G37523' => 'tpr', 'TPR.G559' => 'tpr', 'TWI14G0070' => 'twi', 'TWI14G0729' => 'twi', 'TWI18G0596' => 'twi', 'TWI39G0780' => 'twi', 'TWI39G0850' => 'twi', 'TWI73G1052' => 'twi', 'unitig_52.g17485' => 'ugi', 'unitig_61.g26355' => 'ugi', 'vmacro01040' => 'vma', 'vmacro16731' => 'vma', 'vmacro18270' => 'vma', 'vmacro19142' => 'vma', 'vmacro19407' => 'vma', 'vmacro19408' => 'vma', 'vmacro21899' => 'vma', 'vmacro21900' => 'vma', 'vmacro21901' => 'vma', 'VMungo0251G0490' => 'vmu', 'VMungo0251G1748' => 'vmu', 'VMungo1309G0421' => 'vmu', 'Zm00001eb086500' => 'zma', 'Zm00001eb150680' => 'zma', 'Zm00001eb162330' => 'zma', 'Zm00001eb203130' => 'zma', 'Zm00001eb369480' => 'zma', 'Zm00001eb382340' => 'zma', 'Zm00001eb416360' => 'zma' ), 'gf_id' => 'HOM05D000902', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000902' ), 'data_identifier' => 'HOM05D000902', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000902', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '663', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02470' => 'bna', 'A01p16260' => 'bna', 'A02p01680' => 'bna', 'A03p16600' => 'bna', 'A03p55660' => 'bna', 'A03p64160' => 'bna', 'A03p64170' => 'bna', 'A08p31900' => 'bna', 'A09p59530' => 'bna', 'A10p08230' => 'bna', 'A10p25090' => 'bna', 'Aa31LG3G7100' => 'aar', 'Aa31LG3G7110' => 'aar', 'Aa31LG6G13160' => 'aar', 'Aa31LG7G10770' => 'aar', 'Aa31LG7G3830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2723' => 'aag', 'Actinidia08045' => 'ach', 'Actinidia08888' => 'ach', 'Actinidia18333' => 'ach', 'Actinidia19334' => 'ach', 'Actinidia25552' => 'ach', 'Actinidia26089' => 'ach', 'Actinidia30615' => 'ach', 'Actinidia30616' => 'ach', 'Actinidia33083' => 'ach', 'Actinidia35762' => 'ach', 'Ah.02g110620' => 'amhyb', 'Ah.11g046390' => 'amhyb', 'AL1G31670' => 'aly', 'AL6G23730' => 'aly', 'AL7G14740' => 'aly', 'AL7G14750' => 'aly', 'AL7G14760' => 'aly', 'AL7G28220' => 'aly', 'AL8G24940' => 'aly', 'Aqoxy3G01665' => 'aox', 'Aqoxy3G02853' => 'aox', 'Aqoxy5G01513' => 'aox', 'Aqoxy5G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8SKA4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ75LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKDA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0LJZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7REX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZP4YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWX7I5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2QKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS0L9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPCD8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q161UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC7XCF' => 'arhy', 'AT1G19100' => 'ath', 'AT4G24970' => 'ath', 'AT4G36270' => 'ath', 'AT4G36280' => 'ath', 'AT4G36290' => 'ath', 'AT5G13130' => 'ath', 'AT5G50780' => 'ath', 'ATR0582G266' => 'atr', 'ATR0661G195' => 'atr', 'ATR1152G031' => 'atr', 'Atru.chr11.2382' => 'acertr', 'Atru.chr12.2337' => 'acertr', 'Atru.chr3.744' => 'acertr', 'Atru.chr6.1870' => 'acertr', 'Atru.chr9.2515' => 'acertr', 'AUR62004120' => 'cqu', 'AUR62005667' => 'cqu', 'AUR62007634' => 'cqu', 'AUR62008186' => 'cqu', 'AUR62008187' => 'cqu', 'AUR62008188' => 'cqu', 'AUR62027954' => 'cqu', 'AUR62028766' => 'cqu', 'AUR62028767' => 'cqu', 'AUR62028768' => 'cqu', 'AUR62028886' => 'cqu', 'AUR62029563' => 'cqu', 'AUR62038832' => 'cqu', 'BcaB01g04149' => 'bca', 'BcaB03g12940' => 'bca', 'BcaB03g13090' => 'bca', 'BcaB03g14466' => 'bca', 'BcaB05g24035' => 'bca', 'BcaC01g06050' => 'bca', 'BcaC04g19148' => 'bca', 'BcaC04g20761' => 'bca', 'BcaC06g32845' => 'bca', 'BcaC07g41274' => 'bca', 'BcaC09g50827' => 'bca', 'BcaNung00741' => 'bca', 'BcaNung00742' => 'bca', 'BcaNung01859' => 'bca', 'BcaNung03985' => 'bca', 'BcaNung03989' => 'bca', 'BcaNung05661' => 'bca', 'BolC1t00257H' => 'bol', 'BolC1t01956H' => 'bol', 'BolC2t06534H' => 'bol', 'BolC3t14334H' => 'bol', 'BolC5t30451H' => 'bol', 'BolC7t45880H' => 'bol', 'BolC7t46586H' => 'bol', 'BolC8t49301H' => 'bol', 'BolC8t51837H' => 'bol', 'BolC9t56822H' => 'bol', 'BolC9t59235H' => 'bol', 'BraA01t00234Z' => 'bra', 'BraA01t01563Z' => 'bra', 'BraA02t05147Z' => 'bra', 'BraA03t10947Z' => 'bra', 'BraA03t14633Z' => 'bra', 'BraA08t35112Z' => 'bra', 'BraA09t41330Z' => 'bra', 'BraA10t44570Z' => 'bra', 'C01p02670' => 'bna', 'C01p20260' => 'bna', 'C02p05890' => 'bna', 'C03p19530' => 'bna', 'C05p17470' => 'bna', 'C07p53900' => 'bna', 'C07p61630' => 'bna', 'C08p16800' => 'bna', 'C08p42810' => 'bna', 'C09p39480' => 'bna', 'C09p63980' => 'bna', 'CAN.G1001.7' => 'can', 'CAN.G1034.55' => 'can', 'CAN.G143.7' => 'can', 'CAN.G3340.1' => 'can', 'CAN.G358.19' => 'can', 'CAN.G373.2' => 'can', 'CAN.G674.16' => 'can', 'CAN.G674.17' => 'can', 'CAN.G674.18' => 'can', 'CAN.G732.2' => 'can', 'CAN.G732.3' => 'can', 'CAN.G993.39' => 'can', 'CANSAT01G2052' => 'cansat', 'CANSAT80G0070' => 'cansat', 'CANSAT80G0483' => 'cansat', 'CANSAT80G0625' => 'cansat', 'CARHR019690' => 'chi', 'CARHR080280' => 'chi', 'CARHR152750' => 'chi', 'CARHR152760' => 'chi', 'CARHR152770' => 'chi', 'CARHR200340' => 'chi', 'CARHR232370' => 'chi', 'CARHR244670' => 'chi', 'CARHR244680' => 'chi', 'CARHR257520' => 'chi', 'Carub.0001s1872' => 'cru', 'Carub.0006s1130' => 'cru', 'Carub.0007s0396' => 'cru', 'Carub.0007s0397' => 'cru', 'Carub.0007s1608' => 'cru', 'Carub.0008s1068' => 'cru', 'Carub.0008s1077' => 'cru', 'Ca_16158_v3' => 'car', 'Ca_17571_v3' => 'car', 'Ca_21936_v3' => 'car', 'Ca_22350_v3' => 'car', 'CBR_g22445' => 'cbr', 'CBR_g26290' => 'cbr', 'Cc04_g09610' => 'ccan', 'Cc04_g12280' => 'ccan', 'Cc07_g10230' => 'ccan', 'CDE02G0093' => 'cde', 'CDE02G0701' => 'cde', 'CDE04G1050' => 'cde', 'CDE05G1833' => 'cde', 'CDE05G3058' => 'cde', 'CDE05G3380' => 'cde', 'CDE06G0536' => 'cde', 'Cfa006923' => 'cfa', 'Cfa009402' => 'cfa', 'Cfa018751' => 'cfa', 'Cfa019164' => 'cfa', 'Cfa022935' => 'cfa', 'Ciclev10019081m.g' => 'ccl', 'Ciclev10025076m.g' => 'ccl', 'Ciclev10030712m.g' => 'ccl', 'Ciclev10033760m.g' => 'ccl', 'CiPaw.05G105600' => 'cil', 'CiPaw.08G136700' => 'cil', 'CiPaw.11G003900' => 'cil', 'CiPaw.11G023700' => 'cil', 'CiPaw.12G003700' => 'cil', 'ClCG06G017100' => 'cla', 'ClCG06G018110' => 'cla', 'ClCG07G008800' => 'cla', 'ClCG07G015330' => 'cla', 'COL.COLO4_13698' => 'col', 'COL.COLO4_16659' => 'col', 'COL.COLO4_21986' => 'col', 'COL.COLO4_24049' => 'col', 'COL.COLO4_29061' => 'col', 'COL.COLO4_29075' => 'col', 'COL.COLO4_30094' => 'col', 'Cpa.g.c33689' => 'cpa', 'Cpa.g.sc108.39' => 'cpa', 'Cpa.g.sc108.41' => 'cpa', 'Cpa.g.sc1163.1' => 'cpa', 'Cpa.g.sc4.155' => 'cpa', 'Cpa.g.sc6.194' => 'cpa', 'CsaV3_1G000340' => 'csa', 'CsaV3_1G001400' => 'csa', 'CsaV3_4G002220' => 'csa', 'CsaV3_4G005370' => 'csa', 'CSS0007487' => 'camsi', 'CSS0008066' => 'camsi', 'CSS0009120' => 'camsi', 'CSS0015512' => 'camsi', 'CSS0022409' => 'camsi', 'CSS0025358' => 'camsi', 'CSS0044547' => 'camsi', 'DCAR_013057' => 'dca', 'DCAR_015058' => 'dca', 'DCAR_016027' => 'dca', 'DCAR_017327' => 'dca', 'DCAR_020743' => 'dca', 'DCAR_026157' => 'dca', 'DCAR_032339' => 'dca', 'DCAR_032340' => 'dca', 'Dinv11200' => 'din', 'Dinv11201' => 'din', 'Dinv20631' => 'din', 'Dinv23182' => 'din', 'Dinv33466' => 'din', 'Dinv33583' => 'din', 'Dinv38565' => 'din', 'Duzib068G0200' => 'dzi', 'Duzib147G0132' => 'dzi', 'Duzib147G0635' => 'dzi', 'Duzib205G1670' => 'dzi', 'Duzib251G0606' => 'dzi', 'ECA232G3336' => 'eca', 'ECA232G3763' => 'eca', 'ECA232G4845' => 'eca', 'ECA234G1607' => 'eca', 'ECA246G0932' => 'eca', 'ECA247G0781' => 'eca', 'ECA247G1932' => 'eca', 'ECA247G2079' => 'eca', 'ECA247G3338' => 'eca', 'ECA247G4115' => 'eca', 'EL10Ac3g06552' => 'bvu', 'EL10Ac5g10721' => 'bvu', 'EL10Ac5g10722' => 'bvu', 'EL10Ac5g10723' => 'bvu', 'EL10Ac5g11361' => 'bvu', 'EL10Ac6g13553' => 'bvu', 'EL10As8g23872' => 'bvu', 'Eucgr.B00250' => 'egr', 'Eucgr.B00251' => 'egr', 'Eucgr.B03533' => 'egr', 'Eucgr.I02381' => 'egr', 'Eucgr.K02700' => 'egr', 'FAN02G0174' => 'fan', 'FAN02G3146' => 'fan', 'FAN04G1672' => 'fan', 'FAN04G2273' => 'fan', 'FAN05G2791' => 'fan', 'FAN05G4035' => 'fan', 'FAN07G0834' => 'fan', 'FAN08G1198' => 'fan', 'FAN09G4182' => 'fan', 'FAN12G0496' => 'fan', 'FAN13G1027' => 'fan', 'FAN13G2951' => 'fan', 'FAN14G0705' => 'fan', 'FAN14G0720' => 'fan', 'FAN17G0201' => 'fan', 'FAN17G2665' => 'fan', 'FAN18G1456' => 'fan', 'FAN18G1525' => 'fan', 'FAN18G3500' => 'fan', 'FAN28G2670' => 'fan', 'FvH4_1g12391' => 'fve', 'FvH4_4g23220' => 'fve', 'FvH4_5g08810' => 'fve', 'FvH4_5g28960' => 'fve', 'FvH4_6g42820' => 'fve', 'FvH4_6g51110' => 'fve', 'Glyma.02G051802' => 'gma', 'Glyma.04G185300' => 'gma', 'Glyma.05G202900' => 'gma', 'Glyma.08G010300' => 'gma', 'Glyma.16G131900' => 'gma', 'Glyma.17G087900' => 'gma', 'Gohir.A07G048600' => 'ghi', 'Gohir.A11G179000' => 'ghi', 'Gohir.A12G140900' => 'ghi', 'Gohir.A12G140950' => 'ghi', 'Gohir.A12G191700' => 'ghi', 'Gohir.A13G086300' => 'ghi', 'Gohir.D07G052900' => 'ghi', 'Gohir.D11G186600' => 'ghi', 'Gohir.D12G145575' => 'ghi', 'Gohir.D12G145650' => 'ghi', 'Gohir.D12G145725' => 'ghi', 'Gohir.D12G194050' => 'ghi', 'Gohir.D13G091800' => 'ghi', 'Gorai.001G055900' => 'gra', 'Gorai.007G198400' => 'gra', 'Gorai.008G157000' => 'gra', 'Gorai.008G157100' => 'gra', 'Gorai.008G208700' => 'gra', 'Gorai.010G138700' => 'gra', 'GSVIVG01000977001' => 'vvi', 'GSVIVG01007708001' => 'vvi', 'GSVIVG01008587001' => 'vvi', 'GSVIVG01018849001' => 'vvi', 'GSVIVG01032432001' => 'vvi', 'HanXRQChr02g0034131' => 'han', 'HanXRQChr02g0035981' => 'han', 'HanXRQChr02g0035991' => 'han', 'HanXRQChr05g0155611' => 'han', 'HanXRQChr05g0155621' => 'han', 'HanXRQChr08g0236501' => 'han', 'HanXRQChr09g0261321' => 'han', 'HanXRQChr09g0272081' => 'han', 'HanXRQChr10g0310741' => 'han', 'HanXRQChr11g0325591' => 'han', 'HanXRQChr12g0385691' => 'han', 'HanXRQChr13g0387801' => 'han', 'HanXRQChr15g0463011' => 'han', 'Haze_03826' => 'cav', 'Haze_03827' => 'cav', 'Haze_07183' => 'cav', 'Haze_07537' => 'cav', 'Haze_07539' => 'cav', 'Haze_12461' => 'cav', 'Haze_16115' => 'cav', 'Haze_16808' => 'cav', 'Haze_18531' => 'cav', 'Hma1.2p1_0046F.1_g026700' => 'hma', 'Hma1.2p1_0046F.1_g026710' => 'hma', 'Hma1.2p1_0168F.1_g074340' => 'hma', 'Hma1.2p1_0266F.1_g107030' => 'hma', 'Hma1.2p1_0266F.1_g107060' => 'hma', 'Hma1.2p1_0275F.1_g110510' => 'hma', 'Hma1.2p1_0592F.1_g185490' => 'hma', 'Hma1.2p1_0592F.1_g185500' => 'hma', 'Hma1.2p1_0592F.1_g185510' => 'hma', 'Hma1.2p1_0592F.1_g185520' => 'hma', 'Hma1.2p1_0592F.1_g185530' => 'hma', 'Hma1.2p1_0818F.1_g223450' => 'hma', 'HPP92_009708' => 'vpl', 'HPP92_009793' => 'vpl', 'HPP92_009796' => 'vpl', 'HPP92_009797' => 'vpl', 'HPP92_014940' => 'vpl', 'HPP92_014988' => 'vpl', 'Hund02463' => 'sun', 'Hund02760' => 'sun', 'Hund05071' => 'sun', 'Hund10108' => 'sun', 'Hund11204' => 'sun', 'Hund14016' => 'sun', 'Hund16464' => 'sun', 'Lalb_Chr09g0333391' => 'lal', 'Lalb_Chr11g0070461' => 'lal', 'Lalb_Chr12g0201671' => 'lal', 'Lalb_Chr13g0297161' => 'lal', 'Lj1g0002823' => 'lja', 'Lj3C1074T6' => 'lonja', 'Lj4A212T28' => 'lonja', 'Lj4g0005516' => 'lja', 'Lj4g0013705' => 'lja', 'Lj4g0027865' => 'lja', 'Lj5C92G16' => 'lonja', 'Lj5C92T12' => 'lonja', 'Lj7C596T3' => 'lonja', 'Lj9A446G59' => 'lonja', 'Lj9A482G21' => 'lonja', 'Lsat_1_v5_gn_1_28261' => 'lsa', 'Lsat_1_v5_gn_1_28281' => 'lsa', 'Lsat_1_v5_gn_1_32721' => 'lsa', 'Lsat_1_v5_gn_4_151760' => 'lsa', 'Lsat_1_v5_gn_4_2120' => 'lsa', 'Lsat_1_v5_gn_4_75761' => 'lsa', 'Lsat_1_v5_gn_5_10920' => 'lsa', 'Manes.02G099900' => 'mes', 'Manes.11G096200' => 'mes', 'Manes.12G007200' => 'mes', 'Manes.14G048300' => 'mes', 'Manes.17G114700' => 'mes', 'Mapoly0002s0070' => 'mpo', 'Mapoly0029s0099' => 'mpo', 'MBI07_g24742_MAGBIO' => 'mbi', 'MBI10_g27988_MAGBIO' => 'mbi', 'MBI11_g13057_MAGBIO' => 'mbi', 'MD02G1137200' => 'mdo', 'MD06G1137200' => 'mdo', 'MD07G1122300' => 'mdo', 'MD09G1078200' => 'mdo', 'MD13G1123700' => 'mdo', 'MD14G1151900' => 'mdo', 'MD17G1030900' => 'mdo', 'MD17G1068200' => 'mdo', 'MD17G1068600' => 'mdo', 'Medtr3g077540' => 'mtr', 'Medtr4g105530' => 'mtr', 'Medtr8g076580' => 'mtr', 'Medtr8g076590' => 'mtr', 'Medtr8g096410' => 'mtr', 'MELO3C016411.2' => 'cme', 'MELO3C017780.2' => 'cme', 'MELO3C022560.2' => 'cme', 'MELO3C026187.2' => 'cme', 'MELO3C026286.2' => 'cme', 'MELO3C032854.2' => 'cme', 'Migut.H02495' => 'egut', 'Migut.I00561' => 'egut', 'Migut.K01015' => 'egut', 'Migut.K01016' => 'egut', 'Migut.L00743' => 'egut', 'Migut.L00744' => 'egut', 'Migut.L00746' => 'egut', 'Migut.L00798' => 'egut', 'Migut.L00799' => 'egut', 'Migut.N02096' => 'egut', 'MSTRG.11259' => 'ama', 'MSTRG.23142' => 'ama', 'MSTRG.2499' => 'ama', 'Nitab4.5_0000003g0730' => 'nta', 'Nitab4.5_0000137g0020' => 'nta', 'Nitab4.5_0000721g0210' => 'nta', 'Nitab4.5_0000723g0050' => 'nta', 'Nitab4.5_0000913g0070' => 'nta', 'Nitab4.5_0001332g0040' => 'nta', 'Nitab4.5_0001771g0050' => 'nta', 'Nitab4.5_0001918g0050' => 'nta', 'Nitab4.5_0002686g0030' => 'nta', 'Nitab4.5_0003156g0020' => 'nta', 'Nitab4.5_0003383g0040' => 'nta', 'Nitab4.5_0003918g0010' => 'nta', 'Nitab4.5_0006760g0010' => 'nta', 'Nn1g05981' => 'nnu', 'Nn1g06288' => 'nnu', 'Nn3g16371' => 'nnu', 'Nn3g16786' => 'nnu', 'Nn4g22232' => 'nnu', 'Oeu005144.1' => 'oeu', 'Oeu005145.1' => 'oeu', 'Oeu011348.1' => 'oeu', 'Oeu016415.1' => 'oeu', 'Oeu023501.1' => 'oeu', 'Oeu044473.1' => 'oeu', 'Oeu048892.2' => 'oeu', 'Os01g0549200' => 'osa', 'Os02g0469300' => 'osa', 'Os04g0311100' => 'osa', 'Os06g0474900' => 'osa', 'Os10g0181700' => 'osa', 'Os11g0454800' => 'osa', 'Peaxi162Scf00037g00714' => 'pax', 'Peaxi162Scf00084g01217' => 'pax', 'Peaxi162Scf00257g00217' => 'pax', 'Peaxi162Scf00516g00215' => 'pax', 'Peaxi162Scf00689g00123' => 'pax', 'PGR044G2719' => 'pgr', 'PGR083G1360' => 'pgr', 'PGR102G2849' => 'pgr', 'PGR119G2534' => 'pgr', 'PGSC0003DMG400003538' => 'stu', 'PGSC0003DMG400028138' => 'stu', 'PGSC0003DMG400031732' => 'stu', 'PGSC0003DMG400038165' => 'stu', 'Phvul.002G284600' => 'pvu', 'Phvul.003G258200' => 'pvu', 'Phvul.009G176500' => 'pvu', 'Potri.003G167201' => 'ptr', 'Potri.005G118400' => 'ptr', 'Potri.012G089000' => 'ptr', 'Potri.012G102800' => 'ptr', 'Potri.015G079400' => 'ptr', 'Potri.015G100900' => 'ptr', 'Pp3c14_9810' => 'ppa', 'Pp3c15_10450' => 'ppa', 'Pp3c20_19150' => 'ppa', 'Pp3c23_12740' => 'ppa', 'Pp3c23_6310' => 'ppa', 'Pp3c24_3720' => 'ppa', 'Pp3c27_2580' => 'ppa', 'Pp3c9_8990' => 'ppa', 'PRCOL_00002854' => 'pco', 'Prupe.1G221200' => 'ppe', 'Prupe.3G289000' => 'ppe', 'Prupe.5G147000' => 'ppe', 'Prupe.6G157300' => 'ppe', 'Prupe.7G163400' => 'ppe', 'Psat0s2177g0040' => 'psa', 'Psat3g174760' => 'psa', 'Psat3g192160' => 'psa', 'Psat4g058520' => 'psa', 'Psat4g096840' => 'psa', 'Psat7g037320' => 'psa', 'PSO017G1274' => 'pso', 'PSO017G5166' => 'pso', 'PSO063G4558' => 'pso', 'PSO170G4458' => 'pso', 'PSO170G5005' => 'pso', 'PSO210G6156' => 'pso', 'PSO210G6635' => 'pso', 'PSO210G7397' => 'pso', 'PSO210G7700' => 'pso', 'PSO455G0035' => 'pso', 'PSO455G0180' => 'pso', 'PSO478G4515' => 'pso', 'PSO832G1305' => 'pso', 'PSO832G3489' => 'pso', 'QL02p075247' => 'qlo', 'QL03p051148' => 'qlo', 'QL05p010313' => 'qlo', 'QL06p034627' => 'qlo', 'QL10p001889' => 'qlo', 'QL10p010846' => 'qlo', 'RcHm_v2.0_Chr1g0350621' => 'rch', 'RcHm_v2.0_Chr1g0350641' => 'rch', 'RcHm_v2.0_Chr2g0092891' => 'rch', 'RcHm_v2.0_Chr2g0100251' => 'rch', 'RcHm_v2.0_Chr2g0158661' => 'rch', 'RcHm_v2.0_Chr2g0172741' => 'rch', 'RcHm_v2.0_Chr4g0429571' => 'rch', 'RcHm_v2.0_Chr5g0042471' => 'rch', 'RcHm_v2.0_Chr7g0189451' => 'rch', 'Rhsim08G0052000' => 'rsi', 'Rhsim08G0174400' => 'rsi', 'Rhsim08G0193200' => 'rsi', 'Rhsim10G0214800' => 'rsi', 'Rhsim10G0214900' => 'rsi', 'Rhsim10G0215000' => 'rsi', 'Rhsim12G0022900' => 'rsi', 'Rhsim12G0177500' => 'rsi', 'Rhsim12G0177700' => 'rsi', 'Sabra03G0122600' => 'sbr', 'Sabra05G0097400' => 'sbr', 'Sabra12G0064100' => 'sbr', 'Sabra15G0121300' => 'sbr', 'SalBow2G0642' => 'sbo', 'SalBow5G2667' => 'sbo', 'SalBow5G4873' => 'sbo', 'SalBow8G2395' => 'sbo', 'Sc03g0003290' => 'sci', 'Sc10g0010130' => 'sci', 'Sc22g0003650' => 'sci', 'Sed0001603' => 'sed', 'Sed0004259' => 'sed', 'Sed0006789' => 'sed', 'Sed0011838' => 'sed', 'Sed0012964' => 'sed', 'Sed0016383' => 'sed', 'Sed0019010' => 'sed', 'Sed0020188' => 'sed', 'SEGI_04702' => 'sgi', 'SEGI_17231' => 'sgi', 'SEGI_18877' => 'sgi', 'SEGI_25196' => 'sgi', 'SEGI_25515' => 'sgi', 'SEGI_28445' => 'sgi', 'SEGI_37452' => 'sgi', 'SGA_v2.0_scaffold188G40336' => 'sas', 'SGA_v2.0_scaffold228G43247' => 'sas', 'SGA_v2.0_scaffold280G46853' => 'sas', 'SGA_v2.0_scaffold34G13808' => 'sas', 'SGA_v2.0_scaffold40G15576' => 'sas', 'SGA_v2.0_scaffold611G53188' => 'sas', 'SGA_v2.0_scaffold78G25461' => 'sas', 'SGA_v2.0_scaffold90G27888' => 'sas', 'SHI08601' => 'shi', 'SHI08606' => 'shi', 'SHI17117' => 'shi', 'SHI17119' => 'shi', 'SMO118G0201' => 'smo', 'SMO169G0247' => 'smo', 'SMO176G0006' => 'smo', 'SMO176G0015' => 'smo', 'SMO202G0006' => 'smo', 'SMO240G0050' => 'smo', 'SMO286G0009' => 'smo', 'SMO338G0033' => 'smo', 'SMO356G0533' => 'smo', 'SMO364G0382' => 'smo', 'SMO367G0166' => 'smo', 'SMO367G1098' => 'smo', 'Solyc01g009920.3' => 'sly', 'Solyc01g099300.3' => 'sly', 'Solyc02g084700.3' => 'sly', 'Solyc03g097520.3' => 'sly', 'Solyc06g071580.3' => 'sly', 'Solyc10g081760.3' => 'sly', 'Sopen01g005480' => 'spe', 'Sopen01g042850' => 'spe', 'Sopen02g029370' => 'spe', 'Sopen03g028280' => 'spe', 'Sopen06g027870' => 'spe', 'Sopen10g032270' => 'spe', 'Sp5g18180' => 'spa', 'Sp6g12880' => 'spa', 'Sp6g30850' => 'spa', 'Sp7g22960' => 'spa', 'Sp7g34010' => 'spa', 'SpUn1326_0010' => 'spa', 'TAR371G0242' => 'tar', 'TAR622G0638' => 'tar', 'TAR628G1548' => 'tar', 'TAR629G1079' => 'tar', 'TAR629G3413' => 'tar', 'THA.LOC104804249' => 'tha', 'THA.LOC104808315' => 'tha', 'THA.LOC104809238' => 'tha', 'THA.LOC104825484' => 'tha', 'Thecc.01G025500' => 'tca', 'Thecc.03G015800' => 'tca', 'Thecc.03G018000' => 'tca', 'Thecc.03G134800' => 'tca', 'Thecc.04G014700' => 'tca', 'Thhalv10006991m.g' => 'esa', 'Thhalv10012707m.g' => 'esa', 'Thhalv10015739m.g' => 'esa', 'Thhalv10024553m.g' => 'esa', 'Thhalv10024673m.g' => 'esa', 'Thhalv10029187m.g' => 'esa', 'TPR.G12971' => 'tpr', 'TPR.G29396' => 'tpr', 'TPR.G33376' => 'tpr', 'TPR.G35508' => 'tpr', 'TPR.G35516' => 'tpr', 'TPR.G37317' => 'tpr', 'TPR.G37389' => 'tpr', 'TPR.G37523' => 'tpr', 'TPR.G559' => 'tpr', 'TWI14G0070' => 'twi', 'TWI14G0729' => 'twi', 'TWI18G0596' => 'twi', 'TWI39G0780' => 'twi', 'TWI39G0850' => 'twi', 'TWI73G1052' => 'twi', 'unitig_52.g17485' => 'ugi', 'unitig_61.g26355' => 'ugi', 'vmacro01040' => 'vma', 'vmacro16731' => 'vma', 'vmacro18270' => 'vma', 'vmacro19142' => 'vma', 'vmacro19407' => 'vma', 'vmacro19408' => 'vma', 'vmacro21899' => 'vma', 'vmacro21900' => 'vma', 'vmacro21901' => 'vma', 'VMungo0251G0490' => 'vmu', 'VMungo0251G1748' => 'vmu', 'VMungo1309G0421' => 'vmu', 'Zm00001eb086500' => 'zma', 'Zm00001eb150680' => 'zma', 'Zm00001eb162330' => 'zma', 'Zm00001eb203130' => 'zma', 'Zm00001eb369480' => 'zma', 'Zm00001eb382340' => 'zma', 'Zm00001eb416360' => 'zma' ) $gf_id = 'HOM05D000902' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000902' ) $data_identifier = 'HOM05D000902' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 13, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 10, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 6, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 9, 'hma' => (int) 12, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 4, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 6, 'ppa' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 6, 'rch' => (int) 9, 'rsi' => (int) 9, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 12, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 3, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416360' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000902', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '663', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02470' => 'bna', 'A01p16260' => 'bna', 'A02p01680' => 'bna', 'A03p16600' => 'bna', 'A03p55660' => 'bna', 'A03p64160' => 'bna', 'A03p64170' => 'bna', 'A08p31900' => 'bna', 'A09p59530' => 'bna', 'A10p08230' => 'bna', 'A10p25090' => 'bna', 'Aa31LG3G7100' => 'aar', 'Aa31LG3G7110' => 'aar', 'Aa31LG6G13160' => 'aar', 'Aa31LG7G10770' => 'aar', 'Aa31LG7G3830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2723' => 'aag', 'Actinidia08045' => 'ach', 'Actinidia08888' => 'ach', 'Actinidia18333' => 'ach', 'Actinidia19334' => 'ach', 'Actinidia25552' => 'ach', 'Actinidia26089' => 'ach', 'Actinidia30615' => 'ach', 'Actinidia30616' => 'ach', 'Actinidia33083' => 'ach', 'Actinidia35762' => 'ach', 'Ah.02g110620' => 'amhyb', 'Ah.11g046390' => 'amhyb', 'AL1G31670' => 'aly', 'AL6G23730' => 'aly', 'AL7G14740' => 'aly', 'AL7G14750' => 'aly', 'AL7G14760' => 'aly', 'AL7G28220' => 'aly', 'AL8G24940' => 'aly', 'Aqoxy3G01665' => 'aox', 'Aqoxy3G02853' => 'aox', 'Aqoxy5G01513' => 'aox', 'Aqoxy5G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8SKA4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ75LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKDA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0LJZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7REX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZP4YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWX7I5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2QKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS0L9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPCD8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q161UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC7XCF' => 'arhy', 'AT1G19100' => 'ath', 'AT4G24970' => 'ath', 'AT4G36270' => 'ath', 'AT4G36280' => 'ath', 'AT4G36290' => 'ath', 'AT5G13130' => 'ath', 'AT5G50780' => 'ath', 'ATR0582G266' => 'atr', 'ATR0661G195' => 'atr', 'ATR1152G031' => 'atr', 'Atru.chr11.2382' => 'acertr', 'Atru.chr12.2337' => 'acertr', 'Atru.chr3.744' => 'acertr', 'Atru.chr6.1870' => 'acertr', 'Atru.chr9.2515' => 'acertr', 'AUR62004120' => 'cqu', 'AUR62005667' => 'cqu', 'AUR62007634' => 'cqu', 'AUR62008186' => 'cqu', 'AUR62008187' => 'cqu', 'AUR62008188' => 'cqu', 'AUR62027954' => 'cqu', 'AUR62028766' => 'cqu', 'AUR62028767' => 'cqu', 'AUR62028768' => 'cqu', 'AUR62028886' => 'cqu', 'AUR62029563' => 'cqu', 'AUR62038832' => 'cqu', 'BcaB01g04149' => 'bca', 'BcaB03g12940' => 'bca', 'BcaB03g13090' => 'bca', 'BcaB03g14466' => 'bca', 'BcaB05g24035' => 'bca', 'BcaC01g06050' => 'bca', 'BcaC04g19148' => 'bca', 'BcaC04g20761' => 'bca', 'BcaC06g32845' => 'bca', 'BcaC07g41274' => 'bca', 'BcaC09g50827' => 'bca', 'BcaNung00741' => 'bca', 'BcaNung00742' => 'bca', 'BcaNung01859' => 'bca', 'BcaNung03985' => 'bca', 'BcaNung03989' => 'bca', 'BcaNung05661' => 'bca', 'BolC1t00257H' => 'bol', 'BolC1t01956H' => 'bol', 'BolC2t06534H' => 'bol', 'BolC3t14334H' => 'bol', 'BolC5t30451H' => 'bol', 'BolC7t45880H' => 'bol', 'BolC7t46586H' => 'bol', 'BolC8t49301H' => 'bol', 'BolC8t51837H' => 'bol', 'BolC9t56822H' => 'bol', 'BolC9t59235H' => 'bol', 'BraA01t00234Z' => 'bra', 'BraA01t01563Z' => 'bra', 'BraA02t05147Z' => 'bra', 'BraA03t10947Z' => 'bra', 'BraA03t14633Z' => 'bra', 'BraA08t35112Z' => 'bra', 'BraA09t41330Z' => 'bra', 'BraA10t44570Z' => 'bra', 'C01p02670' => 'bna', 'C01p20260' => 'bna', 'C02p05890' => 'bna', 'C03p19530' => 'bna', 'C05p17470' => 'bna', 'C07p53900' => 'bna', 'C07p61630' => 'bna', 'C08p16800' => 'bna', 'C08p42810' => 'bna', 'C09p39480' => 'bna', 'C09p63980' => 'bna', 'CAN.G1001.7' => 'can', 'CAN.G1034.55' => 'can', 'CAN.G143.7' => 'can', 'CAN.G3340.1' => 'can', 'CAN.G358.19' => 'can', 'CAN.G373.2' => 'can', 'CAN.G674.16' => 'can', 'CAN.G674.17' => 'can', 'CAN.G674.18' => 'can', 'CAN.G732.2' => 'can', 'CAN.G732.3' => 'can', 'CAN.G993.39' => 'can', 'CANSAT01G2052' => 'cansat', 'CANSAT80G0070' => 'cansat', 'CANSAT80G0483' => 'cansat', 'CANSAT80G0625' => 'cansat', 'CARHR019690' => 'chi', 'CARHR080280' => 'chi', 'CARHR152750' => 'chi', 'CARHR152760' => 'chi', 'CARHR152770' => 'chi', 'CARHR200340' => 'chi', 'CARHR232370' => 'chi', 'CARHR244670' => 'chi', 'CARHR244680' => 'chi', 'CARHR257520' => 'chi', 'Carub.0001s1872' => 'cru', 'Carub.0006s1130' => 'cru', 'Carub.0007s0396' => 'cru', 'Carub.0007s0397' => 'cru', 'Carub.0007s1608' => 'cru', 'Carub.0008s1068' => 'cru', 'Carub.0008s1077' => 'cru', 'Ca_16158_v3' => 'car', 'Ca_17571_v3' => 'car', 'Ca_21936_v3' => 'car', 'Ca_22350_v3' => 'car', 'CBR_g22445' => 'cbr', 'CBR_g26290' => 'cbr', 'Cc04_g09610' => 'ccan', 'Cc04_g12280' => 'ccan', 'Cc07_g10230' => 'ccan', 'CDE02G0093' => 'cde', 'CDE02G0701' => 'cde', 'CDE04G1050' => 'cde', 'CDE05G1833' => 'cde', 'CDE05G3058' => 'cde', 'CDE05G3380' => 'cde', 'CDE06G0536' => 'cde', 'Cfa006923' => 'cfa', 'Cfa009402' => 'cfa', 'Cfa018751' => 'cfa', 'Cfa019164' => 'cfa', 'Cfa022935' => 'cfa', 'Ciclev10019081m.g' => 'ccl', 'Ciclev10025076m.g' => 'ccl', 'Ciclev10030712m.g' => 'ccl', 'Ciclev10033760m.g' => 'ccl', 'CiPaw.05G105600' => 'cil', 'CiPaw.08G136700' => 'cil', 'CiPaw.11G003900' => 'cil', 'CiPaw.11G023700' => 'cil', 'CiPaw.12G003700' => 'cil', 'ClCG06G017100' => 'cla', 'ClCG06G018110' => 'cla', 'ClCG07G008800' => 'cla', 'ClCG07G015330' => 'cla', 'COL.COLO4_13698' => 'col', 'COL.COLO4_16659' => 'col', 'COL.COLO4_21986' => 'col', 'COL.COLO4_24049' => 'col', 'COL.COLO4_29061' => 'col', 'COL.COLO4_29075' => 'col', 'COL.COLO4_30094' => 'col', 'Cpa.g.c33689' => 'cpa', 'Cpa.g.sc108.39' => 'cpa', 'Cpa.g.sc108.41' => 'cpa', 'Cpa.g.sc1163.1' => 'cpa', 'Cpa.g.sc4.155' => 'cpa', 'Cpa.g.sc6.194' => 'cpa', 'CsaV3_1G000340' => 'csa', 'CsaV3_1G001400' => 'csa', 'CsaV3_4G002220' => 'csa', 'CsaV3_4G005370' => 'csa', 'CSS0007487' => 'camsi', 'CSS0008066' => 'camsi', 'CSS0009120' => 'camsi', 'CSS0015512' => 'camsi', 'CSS0022409' => 'camsi', 'CSS0025358' => 'camsi', 'CSS0044547' => 'camsi', 'DCAR_013057' => 'dca', 'DCAR_015058' => 'dca', 'DCAR_016027' => 'dca', 'DCAR_017327' => 'dca', 'DCAR_020743' => 'dca', 'DCAR_026157' => 'dca', 'DCAR_032339' => 'dca', 'DCAR_032340' => 'dca', 'Dinv11200' => 'din', 'Dinv11201' => 'din', 'Dinv20631' => 'din', 'Dinv23182' => 'din', 'Dinv33466' => 'din', 'Dinv33583' => 'din', 'Dinv38565' => 'din', 'Duzib068G0200' => 'dzi', 'Duzib147G0132' => 'dzi', 'Duzib147G0635' => 'dzi', 'Duzib205G1670' => 'dzi', 'Duzib251G0606' => 'dzi', 'ECA232G3336' => 'eca', 'ECA232G3763' => 'eca', 'ECA232G4845' => 'eca', 'ECA234G1607' => 'eca', 'ECA246G0932' => 'eca', 'ECA247G0781' => 'eca', 'ECA247G1932' => 'eca', 'ECA247G2079' => 'eca', 'ECA247G3338' => 'eca', 'ECA247G4115' => 'eca', 'EL10Ac3g06552' => 'bvu', 'EL10Ac5g10721' => 'bvu', 'EL10Ac5g10722' => 'bvu', 'EL10Ac5g10723' => 'bvu', 'EL10Ac5g11361' => 'bvu', 'EL10Ac6g13553' => 'bvu', 'EL10As8g23872' => 'bvu', 'Eucgr.B00250' => 'egr', 'Eucgr.B00251' => 'egr', 'Eucgr.B03533' => 'egr', 'Eucgr.I02381' => 'egr', 'Eucgr.K02700' => 'egr', 'FAN02G0174' => 'fan', 'FAN02G3146' => 'fan', 'FAN04G1672' => 'fan', 'FAN04G2273' => 'fan', 'FAN05G2791' => 'fan', 'FAN05G4035' => 'fan', 'FAN07G0834' => 'fan', 'FAN08G1198' => 'fan', 'FAN09G4182' => 'fan', 'FAN12G0496' => 'fan', 'FAN13G1027' => 'fan', 'FAN13G2951' => 'fan', 'FAN14G0705' => 'fan', 'FAN14G0720' => 'fan', 'FAN17G0201' => 'fan', 'FAN17G2665' => 'fan', 'FAN18G1456' => 'fan', 'FAN18G1525' => 'fan', 'FAN18G3500' => 'fan', 'FAN28G2670' => 'fan', 'FvH4_1g12391' => 'fve', 'FvH4_4g23220' => 'fve', 'FvH4_5g08810' => 'fve', 'FvH4_5g28960' => 'fve', 'FvH4_6g42820' => 'fve', 'FvH4_6g51110' => 'fve', 'Glyma.02G051802' => 'gma', 'Glyma.04G185300' => 'gma', 'Glyma.05G202900' => 'gma', 'Glyma.08G010300' => 'gma', 'Glyma.16G131900' => 'gma', 'Glyma.17G087900' => 'gma', 'Gohir.A07G048600' => 'ghi', 'Gohir.A11G179000' => 'ghi', 'Gohir.A12G140900' => 'ghi', 'Gohir.A12G140950' => 'ghi', 'Gohir.A12G191700' => 'ghi', 'Gohir.A13G086300' => 'ghi', 'Gohir.D07G052900' => 'ghi', 'Gohir.D11G186600' => 'ghi', 'Gohir.D12G145575' => 'ghi', 'Gohir.D12G145650' => 'ghi', 'Gohir.D12G145725' => 'ghi', 'Gohir.D12G194050' => 'ghi', 'Gohir.D13G091800' => 'ghi', 'Gorai.001G055900' => 'gra', 'Gorai.007G198400' => 'gra', 'Gorai.008G157000' => 'gra', 'Gorai.008G157100' => 'gra', 'Gorai.008G208700' => 'gra', 'Gorai.010G138700' => 'gra', 'GSVIVG01000977001' => 'vvi', 'GSVIVG01007708001' => 'vvi', 'GSVIVG01008587001' => 'vvi', 'GSVIVG01018849001' => 'vvi', 'GSVIVG01032432001' => 'vvi', 'HanXRQChr02g0034131' => 'han', 'HanXRQChr02g0035981' => 'han', 'HanXRQChr02g0035991' => 'han', 'HanXRQChr05g0155611' => 'han', 'HanXRQChr05g0155621' => 'han', 'HanXRQChr08g0236501' => 'han', 'HanXRQChr09g0261321' => 'han', 'HanXRQChr09g0272081' => 'han', 'HanXRQChr10g0310741' => 'han', 'HanXRQChr11g0325591' => 'han', 'HanXRQChr12g0385691' => 'han', 'HanXRQChr13g0387801' => 'han', 'HanXRQChr15g0463011' => 'han', 'Haze_03826' => 'cav', 'Haze_03827' => 'cav', 'Haze_07183' => 'cav', 'Haze_07537' => 'cav', 'Haze_07539' => 'cav', 'Haze_12461' => 'cav', 'Haze_16115' => 'cav', 'Haze_16808' => 'cav', 'Haze_18531' => 'cav', 'Hma1.2p1_0046F.1_g026700' => 'hma', 'Hma1.2p1_0046F.1_g026710' => 'hma', 'Hma1.2p1_0168F.1_g074340' => 'hma', 'Hma1.2p1_0266F.1_g107030' => 'hma', 'Hma1.2p1_0266F.1_g107060' => 'hma', 'Hma1.2p1_0275F.1_g110510' => 'hma', 'Hma1.2p1_0592F.1_g185490' => 'hma', 'Hma1.2p1_0592F.1_g185500' => 'hma', 'Hma1.2p1_0592F.1_g185510' => 'hma', 'Hma1.2p1_0592F.1_g185520' => 'hma', 'Hma1.2p1_0592F.1_g185530' => 'hma', 'Hma1.2p1_0818F.1_g223450' => 'hma', 'HPP92_009708' => 'vpl', 'HPP92_009793' => 'vpl', 'HPP92_009796' => 'vpl', 'HPP92_009797' => 'vpl', 'HPP92_014940' => 'vpl', 'HPP92_014988' => 'vpl', 'Hund02463' => 'sun', 'Hund02760' => 'sun', 'Hund05071' => 'sun', 'Hund10108' => 'sun', 'Hund11204' => 'sun', 'Hund14016' => 'sun', 'Hund16464' => 'sun', 'Lalb_Chr09g0333391' => 'lal', 'Lalb_Chr11g0070461' => 'lal', 'Lalb_Chr12g0201671' => 'lal', 'Lalb_Chr13g0297161' => 'lal', 'Lj1g0002823' => 'lja', 'Lj3C1074T6' => 'lonja', 'Lj4A212T28' => 'lonja', 'Lj4g0005516' => 'lja', 'Lj4g0013705' => 'lja', 'Lj4g0027865' => 'lja', 'Lj5C92G16' => 'lonja', 'Lj5C92T12' => 'lonja', 'Lj7C596T3' => 'lonja', 'Lj9A446G59' => 'lonja', 'Lj9A482G21' => 'lonja', 'Lsat_1_v5_gn_1_28261' => 'lsa', 'Lsat_1_v5_gn_1_28281' => 'lsa', 'Lsat_1_v5_gn_1_32721' => 'lsa', 'Lsat_1_v5_gn_4_151760' => 'lsa', 'Lsat_1_v5_gn_4_2120' => 'lsa', 'Lsat_1_v5_gn_4_75761' => 'lsa', 'Lsat_1_v5_gn_5_10920' => 'lsa', 'Manes.02G099900' => 'mes', 'Manes.11G096200' => 'mes', 'Manes.12G007200' => 'mes', 'Manes.14G048300' => 'mes', 'Manes.17G114700' => 'mes', 'Mapoly0002s0070' => 'mpo', 'Mapoly0029s0099' => 'mpo', 'MBI07_g24742_MAGBIO' => 'mbi', 'MBI10_g27988_MAGBIO' => 'mbi', 'MBI11_g13057_MAGBIO' => 'mbi', 'MD02G1137200' => 'mdo', 'MD06G1137200' => 'mdo', 'MD07G1122300' => 'mdo', 'MD09G1078200' => 'mdo', 'MD13G1123700' => 'mdo', 'MD14G1151900' => 'mdo', 'MD17G1030900' => 'mdo', 'MD17G1068200' => 'mdo', 'MD17G1068600' => 'mdo', 'Medtr3g077540' => 'mtr', 'Medtr4g105530' => 'mtr', 'Medtr8g076580' => 'mtr', 'Medtr8g076590' => 'mtr', 'Medtr8g096410' => 'mtr', 'MELO3C016411.2' => 'cme', 'MELO3C017780.2' => 'cme', 'MELO3C022560.2' => 'cme', 'MELO3C026187.2' => 'cme', 'MELO3C026286.2' => 'cme', 'MELO3C032854.2' => 'cme', 'Migut.H02495' => 'egut', 'Migut.I00561' => 'egut', 'Migut.K01015' => 'egut', 'Migut.K01016' => 'egut', 'Migut.L00743' => 'egut', 'Migut.L00744' => 'egut', 'Migut.L00746' => 'egut', 'Migut.L00798' => 'egut', 'Migut.L00799' => 'egut', 'Migut.N02096' => 'egut', 'MSTRG.11259' => 'ama', 'MSTRG.23142' => 'ama', 'MSTRG.2499' => 'ama', 'Nitab4.5_0000003g0730' => 'nta', 'Nitab4.5_0000137g0020' => 'nta', 'Nitab4.5_0000721g0210' => 'nta', 'Nitab4.5_0000723g0050' => 'nta', 'Nitab4.5_0000913g0070' => 'nta', 'Nitab4.5_0001332g0040' => 'nta', 'Nitab4.5_0001771g0050' => 'nta', 'Nitab4.5_0001918g0050' => 'nta', 'Nitab4.5_0002686g0030' => 'nta', 'Nitab4.5_0003156g0020' => 'nta', 'Nitab4.5_0003383g0040' => 'nta', 'Nitab4.5_0003918g0010' => 'nta', 'Nitab4.5_0006760g0010' => 'nta', 'Nn1g05981' => 'nnu', 'Nn1g06288' => 'nnu', 'Nn3g16371' => 'nnu', 'Nn3g16786' => 'nnu', 'Nn4g22232' => 'nnu', 'Oeu005144.1' => 'oeu', 'Oeu005145.1' => 'oeu', 'Oeu011348.1' => 'oeu', 'Oeu016415.1' => 'oeu', 'Oeu023501.1' => 'oeu', 'Oeu044473.1' => 'oeu', 'Oeu048892.2' => 'oeu', 'Os01g0549200' => 'osa', 'Os02g0469300' => 'osa', 'Os04g0311100' => 'osa', 'Os06g0474900' => 'osa', 'Os10g0181700' => 'osa', 'Os11g0454800' => 'osa', 'Peaxi162Scf00037g00714' => 'pax', 'Peaxi162Scf00084g01217' => 'pax', 'Peaxi162Scf00257g00217' => 'pax', 'Peaxi162Scf00516g00215' => 'pax', 'Peaxi162Scf00689g00123' => 'pax', 'PGR044G2719' => 'pgr', 'PGR083G1360' => 'pgr', 'PGR102G2849' => 'pgr', 'PGR119G2534' => 'pgr', 'PGSC0003DMG400003538' => 'stu', 'PGSC0003DMG400028138' => 'stu', 'PGSC0003DMG400031732' => 'stu', 'PGSC0003DMG400038165' => 'stu', 'Phvul.002G284600' => 'pvu', 'Phvul.003G258200' => 'pvu', 'Phvul.009G176500' => 'pvu', 'Potri.003G167201' => 'ptr', 'Potri.005G118400' => 'ptr', 'Potri.012G089000' => 'ptr', 'Potri.012G102800' => 'ptr', 'Potri.015G079400' => 'ptr', 'Potri.015G100900' => 'ptr', 'Pp3c14_9810' => 'ppa', 'Pp3c15_10450' => 'ppa', 'Pp3c20_19150' => 'ppa', 'Pp3c23_12740' => 'ppa', 'Pp3c23_6310' => 'ppa', 'Pp3c24_3720' => 'ppa', 'Pp3c27_2580' => 'ppa', 'Pp3c9_8990' => 'ppa', 'PRCOL_00002854' => 'pco', 'Prupe.1G221200' => 'ppe', 'Prupe.3G289000' => 'ppe', 'Prupe.5G147000' => 'ppe', 'Prupe.6G157300' => 'ppe', 'Prupe.7G163400' => 'ppe', 'Psat0s2177g0040' => 'psa', 'Psat3g174760' => 'psa', 'Psat3g192160' => 'psa', 'Psat4g058520' => 'psa', 'Psat4g096840' => 'psa', 'Psat7g037320' => 'psa', 'PSO017G1274' => 'pso', 'PSO017G5166' => 'pso', 'PSO063G4558' => 'pso', 'PSO170G4458' => 'pso', 'PSO170G5005' => 'pso', 'PSO210G6156' => 'pso', 'PSO210G6635' => 'pso', 'PSO210G7397' => 'pso', 'PSO210G7700' => 'pso', 'PSO455G0035' => 'pso', 'PSO455G0180' => 'pso', 'PSO478G4515' => 'pso', 'PSO832G1305' => 'pso', 'PSO832G3489' => 'pso', 'QL02p075247' => 'qlo', 'QL03p051148' => 'qlo', 'QL05p010313' => 'qlo', 'QL06p034627' => 'qlo', 'QL10p001889' => 'qlo', 'QL10p010846' => 'qlo', 'RcHm_v2.0_Chr1g0350621' => 'rch', 'RcHm_v2.0_Chr1g0350641' => 'rch', 'RcHm_v2.0_Chr2g0092891' => 'rch', 'RcHm_v2.0_Chr2g0100251' => 'rch', 'RcHm_v2.0_Chr2g0158661' => 'rch', 'RcHm_v2.0_Chr2g0172741' => 'rch', 'RcHm_v2.0_Chr4g0429571' => 'rch', 'RcHm_v2.0_Chr5g0042471' => 'rch', 'RcHm_v2.0_Chr7g0189451' => 'rch', 'Rhsim08G0052000' => 'rsi', 'Rhsim08G0174400' => 'rsi', 'Rhsim08G0193200' => 'rsi', 'Rhsim10G0214800' => 'rsi', 'Rhsim10G0214900' => 'rsi', 'Rhsim10G0215000' => 'rsi', 'Rhsim12G0022900' => 'rsi', 'Rhsim12G0177500' => 'rsi', 'Rhsim12G0177700' => 'rsi', 'Sabra03G0122600' => 'sbr', 'Sabra05G0097400' => 'sbr', 'Sabra12G0064100' => 'sbr', 'Sabra15G0121300' => 'sbr', 'SalBow2G0642' => 'sbo', 'SalBow5G2667' => 'sbo', 'SalBow5G4873' => 'sbo', 'SalBow8G2395' => 'sbo', 'Sc03g0003290' => 'sci', 'Sc10g0010130' => 'sci', 'Sc22g0003650' => 'sci', 'Sed0001603' => 'sed', 'Sed0004259' => 'sed', 'Sed0006789' => 'sed', 'Sed0011838' => 'sed', 'Sed0012964' => 'sed', 'Sed0016383' => 'sed', 'Sed0019010' => 'sed', 'Sed0020188' => 'sed', 'SEGI_04702' => 'sgi', 'SEGI_17231' => 'sgi', 'SEGI_18877' => 'sgi', 'SEGI_25196' => 'sgi', 'SEGI_25515' => 'sgi', 'SEGI_28445' => 'sgi', 'SEGI_37452' => 'sgi', 'SGA_v2.0_scaffold188G40336' => 'sas', 'SGA_v2.0_scaffold228G43247' => 'sas', 'SGA_v2.0_scaffold280G46853' => 'sas', 'SGA_v2.0_scaffold34G13808' => 'sas', 'SGA_v2.0_scaffold40G15576' => 'sas', 'SGA_v2.0_scaffold611G53188' => 'sas', 'SGA_v2.0_scaffold78G25461' => 'sas', 'SGA_v2.0_scaffold90G27888' => 'sas', 'SHI08601' => 'shi', 'SHI08606' => 'shi', 'SHI17117' => 'shi', 'SHI17119' => 'shi', 'SMO118G0201' => 'smo', 'SMO169G0247' => 'smo', 'SMO176G0006' => 'smo', 'SMO176G0015' => 'smo', 'SMO202G0006' => 'smo', 'SMO240G0050' => 'smo', 'SMO286G0009' => 'smo', 'SMO338G0033' => 'smo', 'SMO356G0533' => 'smo', 'SMO364G0382' => 'smo', 'SMO367G0166' => 'smo', 'SMO367G1098' => 'smo', 'Solyc01g009920.3' => 'sly', 'Solyc01g099300.3' => 'sly', 'Solyc02g084700.3' => 'sly', 'Solyc03g097520.3' => 'sly', 'Solyc06g071580.3' => 'sly', 'Solyc10g081760.3' => 'sly', 'Sopen01g005480' => 'spe', 'Sopen01g042850' => 'spe', 'Sopen02g029370' => 'spe', 'Sopen03g028280' => 'spe', 'Sopen06g027870' => 'spe', 'Sopen10g032270' => 'spe', 'Sp5g18180' => 'spa', 'Sp6g12880' => 'spa', 'Sp6g30850' => 'spa', 'Sp7g22960' => 'spa', 'Sp7g34010' => 'spa', 'SpUn1326_0010' => 'spa', 'TAR371G0242' => 'tar', 'TAR622G0638' => 'tar', 'TAR628G1548' => 'tar', 'TAR629G1079' => 'tar', 'TAR629G3413' => 'tar', 'THA.LOC104804249' => 'tha', 'THA.LOC104808315' => 'tha', 'THA.LOC104809238' => 'tha', 'THA.LOC104825484' => 'tha', 'Thecc.01G025500' => 'tca', 'Thecc.03G015800' => 'tca', 'Thecc.03G018000' => 'tca', 'Thecc.03G134800' => 'tca', 'Thecc.04G014700' => 'tca', 'Thhalv10006991m.g' => 'esa', 'Thhalv10012707m.g' => 'esa', 'Thhalv10015739m.g' => 'esa', 'Thhalv10024553m.g' => 'esa', 'Thhalv10024673m.g' => 'esa', 'Thhalv10029187m.g' => 'esa', 'TPR.G12971' => 'tpr', 'TPR.G29396' => 'tpr', 'TPR.G33376' => 'tpr', 'TPR.G35508' => 'tpr', 'TPR.G35516' => 'tpr', 'TPR.G37317' => 'tpr', 'TPR.G37389' => 'tpr', 'TPR.G37523' => 'tpr', 'TPR.G559' => 'tpr', 'TWI14G0070' => 'twi', 'TWI14G0729' => 'twi', 'TWI18G0596' => 'twi', 'TWI39G0780' => 'twi', 'TWI39G0850' => 'twi', 'TWI73G1052' => 'twi', 'unitig_52.g17485' => 'ugi', 'unitig_61.g26355' => 'ugi', 'vmacro01040' => 'vma', 'vmacro16731' => 'vma', 'vmacro18270' => 'vma', 'vmacro19142' => 'vma', 'vmacro19407' => 'vma', 'vmacro19408' => 'vma', 'vmacro21899' => 'vma', 'vmacro21900' => 'vma', 'vmacro21901' => 'vma', 'VMungo0251G0490' => 'vmu', 'VMungo0251G1748' => 'vmu', 'VMungo1309G0421' => 'vmu', 'Zm00001eb086500' => 'zma', 'Zm00001eb150680' => 'zma', 'Zm00001eb162330' => 'zma', 'Zm00001eb203130' => 'zma', 'Zm00001eb369480' => 'zma', 'Zm00001eb382340' => 'zma', 'Zm00001eb416360' => 'zma' ), 'gf_id' => 'HOM05D000902', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000902' ), 'data_identifier' => 'HOM05D000902', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000902', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '663', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02470' => 'bna', 'A01p16260' => 'bna', 'A02p01680' => 'bna', 'A03p16600' => 'bna', 'A03p55660' => 'bna', 'A03p64160' => 'bna', 'A03p64170' => 'bna', 'A08p31900' => 'bna', 'A09p59530' => 'bna', 'A10p08230' => 'bna', 'A10p25090' => 'bna', 'Aa31LG3G7100' => 'aar', 'Aa31LG3G7110' => 'aar', 'Aa31LG6G13160' => 'aar', 'Aa31LG7G10770' => 'aar', 'Aa31LG7G3830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2723' => 'aag', 'Actinidia08045' => 'ach', 'Actinidia08888' => 'ach', 'Actinidia18333' => 'ach', 'Actinidia19334' => 'ach', 'Actinidia25552' => 'ach', 'Actinidia26089' => 'ach', 'Actinidia30615' => 'ach', 'Actinidia30616' => 'ach', 'Actinidia33083' => 'ach', 'Actinidia35762' => 'ach', 'Ah.02g110620' => 'amhyb', 'Ah.11g046390' => 'amhyb', 'AL1G31670' => 'aly', 'AL6G23730' => 'aly', 'AL7G14740' => 'aly', 'AL7G14750' => 'aly', 'AL7G14760' => 'aly', 'AL7G28220' => 'aly', 'AL8G24940' => 'aly', 'Aqoxy3G01665' => 'aox', 'Aqoxy3G02853' => 'aox', 'Aqoxy5G01513' => 'aox', 'Aqoxy5G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8SKA4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ75LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKDA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0LJZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7REX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZP4YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWX7I5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2QKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS0L9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPCD8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q161UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC7XCF' => 'arhy', 'AT1G19100' => 'ath', 'AT4G24970' => 'ath', 'AT4G36270' => 'ath', 'AT4G36280' => 'ath', 'AT4G36290' => 'ath', 'AT5G13130' => 'ath', 'AT5G50780' => 'ath', 'ATR0582G266' => 'atr', 'ATR0661G195' => 'atr', 'ATR1152G031' => 'atr', 'Atru.chr11.2382' => 'acertr', 'Atru.chr12.2337' => 'acertr', 'Atru.chr3.744' => 'acertr', 'Atru.chr6.1870' => 'acertr', 'Atru.chr9.2515' => 'acertr', 'AUR62004120' => 'cqu', 'AUR62005667' => 'cqu', 'AUR62007634' => 'cqu', 'AUR62008186' => 'cqu', 'AUR62008187' => 'cqu', 'AUR62008188' => 'cqu', 'AUR62027954' => 'cqu', 'AUR62028766' => 'cqu', 'AUR62028767' => 'cqu', 'AUR62028768' => 'cqu', 'AUR62028886' => 'cqu', 'AUR62029563' => 'cqu', 'AUR62038832' => 'cqu', 'BcaB01g04149' => 'bca', 'BcaB03g12940' => 'bca', 'BcaB03g13090' => 'bca', 'BcaB03g14466' => 'bca', 'BcaB05g24035' => 'bca', 'BcaC01g06050' => 'bca', 'BcaC04g19148' => 'bca', 'BcaC04g20761' => 'bca', 'BcaC06g32845' => 'bca', 'BcaC07g41274' => 'bca', 'BcaC09g50827' => 'bca', 'BcaNung00741' => 'bca', 'BcaNung00742' => 'bca', 'BcaNung01859' => 'bca', 'BcaNung03985' => 'bca', 'BcaNung03989' => 'bca', 'BcaNung05661' => 'bca', 'BolC1t00257H' => 'bol', 'BolC1t01956H' => 'bol', 'BolC2t06534H' => 'bol', 'BolC3t14334H' => 'bol', 'BolC5t30451H' => 'bol', 'BolC7t45880H' => 'bol', 'BolC7t46586H' => 'bol', 'BolC8t49301H' => 'bol', 'BolC8t51837H' => 'bol', 'BolC9t56822H' => 'bol', 'BolC9t59235H' => 'bol', 'BraA01t00234Z' => 'bra', 'BraA01t01563Z' => 'bra', 'BraA02t05147Z' => 'bra', 'BraA03t10947Z' => 'bra', 'BraA03t14633Z' => 'bra', 'BraA08t35112Z' => 'bra', 'BraA09t41330Z' => 'bra', 'BraA10t44570Z' => 'bra', 'C01p02670' => 'bna', 'C01p20260' => 'bna', 'C02p05890' => 'bna', 'C03p19530' => 'bna', 'C05p17470' => 'bna', 'C07p53900' => 'bna', 'C07p61630' => 'bna', 'C08p16800' => 'bna', 'C08p42810' => 'bna', 'C09p39480' => 'bna', 'C09p63980' => 'bna', 'CAN.G1001.7' => 'can', 'CAN.G1034.55' => 'can', 'CAN.G143.7' => 'can', 'CAN.G3340.1' => 'can', 'CAN.G358.19' => 'can', 'CAN.G373.2' => 'can', 'CAN.G674.16' => 'can', 'CAN.G674.17' => 'can', 'CAN.G674.18' => 'can', 'CAN.G732.2' => 'can', 'CAN.G732.3' => 'can', 'CAN.G993.39' => 'can', 'CANSAT01G2052' => 'cansat', 'CANSAT80G0070' => 'cansat', 'CANSAT80G0483' => 'cansat', 'CANSAT80G0625' => 'cansat', 'CARHR019690' => 'chi', 'CARHR080280' => 'chi', 'CARHR152750' => 'chi', 'CARHR152760' => 'chi', 'CARHR152770' => 'chi', 'CARHR200340' => 'chi', 'CARHR232370' => 'chi', 'CARHR244670' => 'chi', 'CARHR244680' => 'chi', 'CARHR257520' => 'chi', 'Carub.0001s1872' => 'cru', 'Carub.0006s1130' => 'cru', 'Carub.0007s0396' => 'cru', 'Carub.0007s0397' => 'cru', 'Carub.0007s1608' => 'cru', 'Carub.0008s1068' => 'cru', 'Carub.0008s1077' => 'cru', 'Ca_16158_v3' => 'car', 'Ca_17571_v3' => 'car', 'Ca_21936_v3' => 'car', 'Ca_22350_v3' => 'car', 'CBR_g22445' => 'cbr', 'CBR_g26290' => 'cbr', 'Cc04_g09610' => 'ccan', 'Cc04_g12280' => 'ccan', 'Cc07_g10230' => 'ccan', 'CDE02G0093' => 'cde', 'CDE02G0701' => 'cde', 'CDE04G1050' => 'cde', 'CDE05G1833' => 'cde', 'CDE05G3058' => 'cde', 'CDE05G3380' => 'cde', 'CDE06G0536' => 'cde', 'Cfa006923' => 'cfa', 'Cfa009402' => 'cfa', 'Cfa018751' => 'cfa', 'Cfa019164' => 'cfa', 'Cfa022935' => 'cfa', 'Ciclev10019081m.g' => 'ccl', 'Ciclev10025076m.g' => 'ccl', 'Ciclev10030712m.g' => 'ccl', 'Ciclev10033760m.g' => 'ccl', 'CiPaw.05G105600' => 'cil', 'CiPaw.08G136700' => 'cil', 'CiPaw.11G003900' => 'cil', 'CiPaw.11G023700' => 'cil', 'CiPaw.12G003700' => 'cil', 'ClCG06G017100' => 'cla', 'ClCG06G018110' => 'cla', 'ClCG07G008800' => 'cla', 'ClCG07G015330' => 'cla', 'COL.COLO4_13698' => 'col', 'COL.COLO4_16659' => 'col', 'COL.COLO4_21986' => 'col', 'COL.COLO4_24049' => 'col', 'COL.COLO4_29061' => 'col', 'COL.COLO4_29075' => 'col', 'COL.COLO4_30094' => 'col', 'Cpa.g.c33689' => 'cpa', 'Cpa.g.sc108.39' => 'cpa', 'Cpa.g.sc108.41' => 'cpa', 'Cpa.g.sc1163.1' => 'cpa', 'Cpa.g.sc4.155' => 'cpa', 'Cpa.g.sc6.194' => 'cpa', 'CsaV3_1G000340' => 'csa', 'CsaV3_1G001400' => 'csa', 'CsaV3_4G002220' => 'csa', 'CsaV3_4G005370' => 'csa', 'CSS0007487' => 'camsi', 'CSS0008066' => 'camsi', 'CSS0009120' => 'camsi', 'CSS0015512' => 'camsi', 'CSS0022409' => 'camsi', 'CSS0025358' => 'camsi', 'CSS0044547' => 'camsi', 'DCAR_013057' => 'dca', 'DCAR_015058' => 'dca', 'DCAR_016027' => 'dca', 'DCAR_017327' => 'dca', 'DCAR_020743' => 'dca', 'DCAR_026157' => 'dca', 'DCAR_032339' => 'dca', 'DCAR_032340' => 'dca', 'Dinv11200' => 'din', 'Dinv11201' => 'din', 'Dinv20631' => 'din', 'Dinv23182' => 'din', 'Dinv33466' => 'din', 'Dinv33583' => 'din', 'Dinv38565' => 'din', 'Duzib068G0200' => 'dzi', 'Duzib147G0132' => 'dzi', 'Duzib147G0635' => 'dzi', 'Duzib205G1670' => 'dzi', 'Duzib251G0606' => 'dzi', 'ECA232G3336' => 'eca', 'ECA232G3763' => 'eca', 'ECA232G4845' => 'eca', 'ECA234G1607' => 'eca', 'ECA246G0932' => 'eca', 'ECA247G0781' => 'eca', 'ECA247G1932' => 'eca', 'ECA247G2079' => 'eca', 'ECA247G3338' => 'eca', 'ECA247G4115' => 'eca', 'EL10Ac3g06552' => 'bvu', 'EL10Ac5g10721' => 'bvu', 'EL10Ac5g10722' => 'bvu', 'EL10Ac5g10723' => 'bvu', 'EL10Ac5g11361' => 'bvu', 'EL10Ac6g13553' => 'bvu', 'EL10As8g23872' => 'bvu', 'Eucgr.B00250' => 'egr', 'Eucgr.B00251' => 'egr', 'Eucgr.B03533' => 'egr', 'Eucgr.I02381' => 'egr', 'Eucgr.K02700' => 'egr', 'FAN02G0174' => 'fan', 'FAN02G3146' => 'fan', 'FAN04G1672' => 'fan', 'FAN04G2273' => 'fan', 'FAN05G2791' => 'fan', 'FAN05G4035' => 'fan', 'FAN07G0834' => 'fan', 'FAN08G1198' => 'fan', 'FAN09G4182' => 'fan', 'FAN12G0496' => 'fan', 'FAN13G1027' => 'fan', 'FAN13G2951' => 'fan', 'FAN14G0705' => 'fan', 'FAN14G0720' => 'fan', 'FAN17G0201' => 'fan', 'FAN17G2665' => 'fan', 'FAN18G1456' => 'fan', 'FAN18G1525' => 'fan', 'FAN18G3500' => 'fan', 'FAN28G2670' => 'fan', 'FvH4_1g12391' => 'fve', 'FvH4_4g23220' => 'fve', 'FvH4_5g08810' => 'fve', 'FvH4_5g28960' => 'fve', 'FvH4_6g42820' => 'fve', 'FvH4_6g51110' => 'fve', 'Glyma.02G051802' => 'gma', 'Glyma.04G185300' => 'gma', 'Glyma.05G202900' => 'gma', 'Glyma.08G010300' => 'gma', 'Glyma.16G131900' => 'gma', 'Glyma.17G087900' => 'gma', 'Gohir.A07G048600' => 'ghi', 'Gohir.A11G179000' => 'ghi', 'Gohir.A12G140900' => 'ghi', 'Gohir.A12G140950' => 'ghi', 'Gohir.A12G191700' => 'ghi', 'Gohir.A13G086300' => 'ghi', 'Gohir.D07G052900' => 'ghi', 'Gohir.D11G186600' => 'ghi', 'Gohir.D12G145575' => 'ghi', 'Gohir.D12G145650' => 'ghi', 'Gohir.D12G145725' => 'ghi', 'Gohir.D12G194050' => 'ghi', 'Gohir.D13G091800' => 'ghi', 'Gorai.001G055900' => 'gra', 'Gorai.007G198400' => 'gra', 'Gorai.008G157000' => 'gra', 'Gorai.008G157100' => 'gra', 'Gorai.008G208700' => 'gra', 'Gorai.010G138700' => 'gra', 'GSVIVG01000977001' => 'vvi', 'GSVIVG01007708001' => 'vvi', 'GSVIVG01008587001' => 'vvi', 'GSVIVG01018849001' => 'vvi', 'GSVIVG01032432001' => 'vvi', 'HanXRQChr02g0034131' => 'han', 'HanXRQChr02g0035981' => 'han', 'HanXRQChr02g0035991' => 'han', 'HanXRQChr05g0155611' => 'han', 'HanXRQChr05g0155621' => 'han', 'HanXRQChr08g0236501' => 'han', 'HanXRQChr09g0261321' => 'han', 'HanXRQChr09g0272081' => 'han', 'HanXRQChr10g0310741' => 'han', 'HanXRQChr11g0325591' => 'han', 'HanXRQChr12g0385691' => 'han', 'HanXRQChr13g0387801' => 'han', 'HanXRQChr15g0463011' => 'han', 'Haze_03826' => 'cav', 'Haze_03827' => 'cav', 'Haze_07183' => 'cav', 'Haze_07537' => 'cav', 'Haze_07539' => 'cav', 'Haze_12461' => 'cav', 'Haze_16115' => 'cav', 'Haze_16808' => 'cav', 'Haze_18531' => 'cav', 'Hma1.2p1_0046F.1_g026700' => 'hma', 'Hma1.2p1_0046F.1_g026710' => 'hma', 'Hma1.2p1_0168F.1_g074340' => 'hma', 'Hma1.2p1_0266F.1_g107030' => 'hma', 'Hma1.2p1_0266F.1_g107060' => 'hma', 'Hma1.2p1_0275F.1_g110510' => 'hma', 'Hma1.2p1_0592F.1_g185490' => 'hma', 'Hma1.2p1_0592F.1_g185500' => 'hma', 'Hma1.2p1_0592F.1_g185510' => 'hma', 'Hma1.2p1_0592F.1_g185520' => 'hma', 'Hma1.2p1_0592F.1_g185530' => 'hma', 'Hma1.2p1_0818F.1_g223450' => 'hma', 'HPP92_009708' => 'vpl', 'HPP92_009793' => 'vpl', 'HPP92_009796' => 'vpl', 'HPP92_009797' => 'vpl', 'HPP92_014940' => 'vpl', 'HPP92_014988' => 'vpl', 'Hund02463' => 'sun', 'Hund02760' => 'sun', 'Hund05071' => 'sun', 'Hund10108' => 'sun', 'Hund11204' => 'sun', 'Hund14016' => 'sun', 'Hund16464' => 'sun', 'Lalb_Chr09g0333391' => 'lal', 'Lalb_Chr11g0070461' => 'lal', 'Lalb_Chr12g0201671' => 'lal', 'Lalb_Chr13g0297161' => 'lal', 'Lj1g0002823' => 'lja', 'Lj3C1074T6' => 'lonja', 'Lj4A212T28' => 'lonja', 'Lj4g0005516' => 'lja', 'Lj4g0013705' => 'lja', 'Lj4g0027865' => 'lja', 'Lj5C92G16' => 'lonja', 'Lj5C92T12' => 'lonja', 'Lj7C596T3' => 'lonja', 'Lj9A446G59' => 'lonja', 'Lj9A482G21' => 'lonja', 'Lsat_1_v5_gn_1_28261' => 'lsa', 'Lsat_1_v5_gn_1_28281' => 'lsa', 'Lsat_1_v5_gn_1_32721' => 'lsa', 'Lsat_1_v5_gn_4_151760' => 'lsa', 'Lsat_1_v5_gn_4_2120' => 'lsa', 'Lsat_1_v5_gn_4_75761' => 'lsa', 'Lsat_1_v5_gn_5_10920' => 'lsa', 'Manes.02G099900' => 'mes', 'Manes.11G096200' => 'mes', 'Manes.12G007200' => 'mes', 'Manes.14G048300' => 'mes', 'Manes.17G114700' => 'mes', 'Mapoly0002s0070' => 'mpo', 'Mapoly0029s0099' => 'mpo', 'MBI07_g24742_MAGBIO' => 'mbi', 'MBI10_g27988_MAGBIO' => 'mbi', 'MBI11_g13057_MAGBIO' => 'mbi', 'MD02G1137200' => 'mdo', 'MD06G1137200' => 'mdo', 'MD07G1122300' => 'mdo', 'MD09G1078200' => 'mdo', 'MD13G1123700' => 'mdo', 'MD14G1151900' => 'mdo', 'MD17G1030900' => 'mdo', 'MD17G1068200' => 'mdo', 'MD17G1068600' => 'mdo', 'Medtr3g077540' => 'mtr', 'Medtr4g105530' => 'mtr', 'Medtr8g076580' => 'mtr', 'Medtr8g076590' => 'mtr', 'Medtr8g096410' => 'mtr', 'MELO3C016411.2' => 'cme', 'MELO3C017780.2' => 'cme', 'MELO3C022560.2' => 'cme', 'MELO3C026187.2' => 'cme', 'MELO3C026286.2' => 'cme', 'MELO3C032854.2' => 'cme', 'Migut.H02495' => 'egut', 'Migut.I00561' => 'egut', 'Migut.K01015' => 'egut', 'Migut.K01016' => 'egut', 'Migut.L00743' => 'egut', 'Migut.L00744' => 'egut', 'Migut.L00746' => 'egut', 'Migut.L00798' => 'egut', 'Migut.L00799' => 'egut', 'Migut.N02096' => 'egut', 'MSTRG.11259' => 'ama', 'MSTRG.23142' => 'ama', 'MSTRG.2499' => 'ama', 'Nitab4.5_0000003g0730' => 'nta', 'Nitab4.5_0000137g0020' => 'nta', 'Nitab4.5_0000721g0210' => 'nta', 'Nitab4.5_0000723g0050' => 'nta', 'Nitab4.5_0000913g0070' => 'nta', 'Nitab4.5_0001332g0040' => 'nta', 'Nitab4.5_0001771g0050' => 'nta', 'Nitab4.5_0001918g0050' => 'nta', 'Nitab4.5_0002686g0030' => 'nta', 'Nitab4.5_0003156g0020' => 'nta', 'Nitab4.5_0003383g0040' => 'nta', 'Nitab4.5_0003918g0010' => 'nta', 'Nitab4.5_0006760g0010' => 'nta', 'Nn1g05981' => 'nnu', 'Nn1g06288' => 'nnu', 'Nn3g16371' => 'nnu', 'Nn3g16786' => 'nnu', 'Nn4g22232' => 'nnu', 'Oeu005144.1' => 'oeu', 'Oeu005145.1' => 'oeu', 'Oeu011348.1' => 'oeu', 'Oeu016415.1' => 'oeu', 'Oeu023501.1' => 'oeu', 'Oeu044473.1' => 'oeu', 'Oeu048892.2' => 'oeu', 'Os01g0549200' => 'osa', 'Os02g0469300' => 'osa', 'Os04g0311100' => 'osa', 'Os06g0474900' => 'osa', 'Os10g0181700' => 'osa', 'Os11g0454800' => 'osa', 'Peaxi162Scf00037g00714' => 'pax', 'Peaxi162Scf00084g01217' => 'pax', 'Peaxi162Scf00257g00217' => 'pax', 'Peaxi162Scf00516g00215' => 'pax', 'Peaxi162Scf00689g00123' => 'pax', 'PGR044G2719' => 'pgr', 'PGR083G1360' => 'pgr', 'PGR102G2849' => 'pgr', 'PGR119G2534' => 'pgr', 'PGSC0003DMG400003538' => 'stu', 'PGSC0003DMG400028138' => 'stu', 'PGSC0003DMG400031732' => 'stu', 'PGSC0003DMG400038165' => 'stu', 'Phvul.002G284600' => 'pvu', 'Phvul.003G258200' => 'pvu', 'Phvul.009G176500' => 'pvu', 'Potri.003G167201' => 'ptr', 'Potri.005G118400' => 'ptr', 'Potri.012G089000' => 'ptr', 'Potri.012G102800' => 'ptr', 'Potri.015G079400' => 'ptr', 'Potri.015G100900' => 'ptr', 'Pp3c14_9810' => 'ppa', 'Pp3c15_10450' => 'ppa', 'Pp3c20_19150' => 'ppa', 'Pp3c23_12740' => 'ppa', 'Pp3c23_6310' => 'ppa', 'Pp3c24_3720' => 'ppa', 'Pp3c27_2580' => 'ppa', 'Pp3c9_8990' => 'ppa', 'PRCOL_00002854' => 'pco', 'Prupe.1G221200' => 'ppe', 'Prupe.3G289000' => 'ppe', 'Prupe.5G147000' => 'ppe', 'Prupe.6G157300' => 'ppe', 'Prupe.7G163400' => 'ppe', 'Psat0s2177g0040' => 'psa', 'Psat3g174760' => 'psa', 'Psat3g192160' => 'psa', 'Psat4g058520' => 'psa', 'Psat4g096840' => 'psa', 'Psat7g037320' => 'psa', 'PSO017G1274' => 'pso', 'PSO017G5166' => 'pso', 'PSO063G4558' => 'pso', 'PSO170G4458' => 'pso', 'PSO170G5005' => 'pso', 'PSO210G6156' => 'pso', 'PSO210G6635' => 'pso', 'PSO210G7397' => 'pso', 'PSO210G7700' => 'pso', 'PSO455G0035' => 'pso', 'PSO455G0180' => 'pso', 'PSO478G4515' => 'pso', 'PSO832G1305' => 'pso', 'PSO832G3489' => 'pso', 'QL02p075247' => 'qlo', 'QL03p051148' => 'qlo', 'QL05p010313' => 'qlo', 'QL06p034627' => 'qlo', 'QL10p001889' => 'qlo', 'QL10p010846' => 'qlo', 'RcHm_v2.0_Chr1g0350621' => 'rch', 'RcHm_v2.0_Chr1g0350641' => 'rch', 'RcHm_v2.0_Chr2g0092891' => 'rch', 'RcHm_v2.0_Chr2g0100251' => 'rch', 'RcHm_v2.0_Chr2g0158661' => 'rch', 'RcHm_v2.0_Chr2g0172741' => 'rch', 'RcHm_v2.0_Chr4g0429571' => 'rch', 'RcHm_v2.0_Chr5g0042471' => 'rch', 'RcHm_v2.0_Chr7g0189451' => 'rch', 'Rhsim08G0052000' => 'rsi', 'Rhsim08G0174400' => 'rsi', 'Rhsim08G0193200' => 'rsi', 'Rhsim10G0214800' => 'rsi', 'Rhsim10G0214900' => 'rsi', 'Rhsim10G0215000' => 'rsi', 'Rhsim12G0022900' => 'rsi', 'Rhsim12G0177500' => 'rsi', 'Rhsim12G0177700' => 'rsi', 'Sabra03G0122600' => 'sbr', 'Sabra05G0097400' => 'sbr', 'Sabra12G0064100' => 'sbr', 'Sabra15G0121300' => 'sbr', 'SalBow2G0642' => 'sbo', 'SalBow5G2667' => 'sbo', 'SalBow5G4873' => 'sbo', 'SalBow8G2395' => 'sbo', 'Sc03g0003290' => 'sci', 'Sc10g0010130' => 'sci', 'Sc22g0003650' => 'sci', 'Sed0001603' => 'sed', 'Sed0004259' => 'sed', 'Sed0006789' => 'sed', 'Sed0011838' => 'sed', 'Sed0012964' => 'sed', 'Sed0016383' => 'sed', 'Sed0019010' => 'sed', 'Sed0020188' => 'sed', 'SEGI_04702' => 'sgi', 'SEGI_17231' => 'sgi', 'SEGI_18877' => 'sgi', 'SEGI_25196' => 'sgi', 'SEGI_25515' => 'sgi', 'SEGI_28445' => 'sgi', 'SEGI_37452' => 'sgi', 'SGA_v2.0_scaffold188G40336' => 'sas', 'SGA_v2.0_scaffold228G43247' => 'sas', 'SGA_v2.0_scaffold280G46853' => 'sas', 'SGA_v2.0_scaffold34G13808' => 'sas', 'SGA_v2.0_scaffold40G15576' => 'sas', 'SGA_v2.0_scaffold611G53188' => 'sas', 'SGA_v2.0_scaffold78G25461' => 'sas', 'SGA_v2.0_scaffold90G27888' => 'sas', 'SHI08601' => 'shi', 'SHI08606' => 'shi', 'SHI17117' => 'shi', 'SHI17119' => 'shi', 'SMO118G0201' => 'smo', 'SMO169G0247' => 'smo', 'SMO176G0006' => 'smo', 'SMO176G0015' => 'smo', 'SMO202G0006' => 'smo', 'SMO240G0050' => 'smo', 'SMO286G0009' => 'smo', 'SMO338G0033' => 'smo', 'SMO356G0533' => 'smo', 'SMO364G0382' => 'smo', 'SMO367G0166' => 'smo', 'SMO367G1098' => 'smo', 'Solyc01g009920.3' => 'sly', 'Solyc01g099300.3' => 'sly', 'Solyc02g084700.3' => 'sly', 'Solyc03g097520.3' => 'sly', 'Solyc06g071580.3' => 'sly', 'Solyc10g081760.3' => 'sly', 'Sopen01g005480' => 'spe', 'Sopen01g042850' => 'spe', 'Sopen02g029370' => 'spe', 'Sopen03g028280' => 'spe', 'Sopen06g027870' => 'spe', 'Sopen10g032270' => 'spe', 'Sp5g18180' => 'spa', 'Sp6g12880' => 'spa', 'Sp6g30850' => 'spa', 'Sp7g22960' => 'spa', 'Sp7g34010' => 'spa', 'SpUn1326_0010' => 'spa', 'TAR371G0242' => 'tar', 'TAR622G0638' => 'tar', 'TAR628G1548' => 'tar', 'TAR629G1079' => 'tar', 'TAR629G3413' => 'tar', 'THA.LOC104804249' => 'tha', 'THA.LOC104808315' => 'tha', 'THA.LOC104809238' => 'tha', 'THA.LOC104825484' => 'tha', 'Thecc.01G025500' => 'tca', 'Thecc.03G015800' => 'tca', 'Thecc.03G018000' => 'tca', 'Thecc.03G134800' => 'tca', 'Thecc.04G014700' => 'tca', 'Thhalv10006991m.g' => 'esa', 'Thhalv10012707m.g' => 'esa', 'Thhalv10015739m.g' => 'esa', 'Thhalv10024553m.g' => 'esa', 'Thhalv10024673m.g' => 'esa', 'Thhalv10029187m.g' => 'esa', 'TPR.G12971' => 'tpr', 'TPR.G29396' => 'tpr', 'TPR.G33376' => 'tpr', 'TPR.G35508' => 'tpr', 'TPR.G35516' => 'tpr', 'TPR.G37317' => 'tpr', 'TPR.G37389' => 'tpr', 'TPR.G37523' => 'tpr', 'TPR.G559' => 'tpr', 'TWI14G0070' => 'twi', 'TWI14G0729' => 'twi', 'TWI18G0596' => 'twi', 'TWI39G0780' => 'twi', 'TWI39G0850' => 'twi', 'TWI73G1052' => 'twi', 'unitig_52.g17485' => 'ugi', 'unitig_61.g26355' => 'ugi', 'vmacro01040' => 'vma', 'vmacro16731' => 'vma', 'vmacro18270' => 'vma', 'vmacro19142' => 'vma', 'vmacro19407' => 'vma', 'vmacro19408' => 'vma', 'vmacro21899' => 'vma', 'vmacro21900' => 'vma', 'vmacro21901' => 'vma', 'VMungo0251G0490' => 'vmu', 'VMungo0251G1748' => 'vmu', 'VMungo1309G0421' => 'vmu', 'Zm00001eb086500' => 'zma', 'Zm00001eb150680' => 'zma', 'Zm00001eb162330' => 'zma', 'Zm00001eb203130' => 'zma', 'Zm00001eb369480' => 'zma', 'Zm00001eb382340' => 'zma', 'Zm00001eb416360' => 'zma' ) $gf_id = 'HOM05D000902' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000902' ) $data_identifier = 'HOM05D000902' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 13, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 10, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 6, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 9, 'hma' => (int) 12, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 4, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 6, 'ppa' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 6, 'rch' => (int) 9, 'rsi' => (int) 9, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 12, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 3, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416360' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000902', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '663', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02470' => 'bna', 'A01p16260' => 'bna', 'A02p01680' => 'bna', 'A03p16600' => 'bna', 'A03p55660' => 'bna', 'A03p64160' => 'bna', 'A03p64170' => 'bna', 'A08p31900' => 'bna', 'A09p59530' => 'bna', 'A10p08230' => 'bna', 'A10p25090' => 'bna', 'Aa31LG3G7100' => 'aar', 'Aa31LG3G7110' => 'aar', 'Aa31LG6G13160' => 'aar', 'Aa31LG7G10770' => 'aar', 'Aa31LG7G3830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2723' => 'aag', 'Actinidia08045' => 'ach', 'Actinidia08888' => 'ach', 'Actinidia18333' => 'ach', 'Actinidia19334' => 'ach', 'Actinidia25552' => 'ach', 'Actinidia26089' => 'ach', 'Actinidia30615' => 'ach', 'Actinidia30616' => 'ach', 'Actinidia33083' => 'ach', 'Actinidia35762' => 'ach', 'Ah.02g110620' => 'amhyb', 'Ah.11g046390' => 'amhyb', 'AL1G31670' => 'aly', 'AL6G23730' => 'aly', 'AL7G14740' => 'aly', 'AL7G14750' => 'aly', 'AL7G14760' => 'aly', 'AL7G28220' => 'aly', 'AL8G24940' => 'aly', 'Aqoxy3G01665' => 'aox', 'Aqoxy3G02853' => 'aox', 'Aqoxy5G01513' => 'aox', 'Aqoxy5G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8SKA4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ75LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKDA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0LJZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7REX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZP4YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWX7I5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2QKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS0L9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPCD8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q161UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC7XCF' => 'arhy', 'AT1G19100' => 'ath', 'AT4G24970' => 'ath', 'AT4G36270' => 'ath', 'AT4G36280' => 'ath', 'AT4G36290' => 'ath', 'AT5G13130' => 'ath', 'AT5G50780' => 'ath', 'ATR0582G266' => 'atr', 'ATR0661G195' => 'atr', 'ATR1152G031' => 'atr', 'Atru.chr11.2382' => 'acertr', 'Atru.chr12.2337' => 'acertr', 'Atru.chr3.744' => 'acertr', 'Atru.chr6.1870' => 'acertr', 'Atru.chr9.2515' => 'acertr', 'AUR62004120' => 'cqu', 'AUR62005667' => 'cqu', 'AUR62007634' => 'cqu', 'AUR62008186' => 'cqu', 'AUR62008187' => 'cqu', 'AUR62008188' => 'cqu', 'AUR62027954' => 'cqu', 'AUR62028766' => 'cqu', 'AUR62028767' => 'cqu', 'AUR62028768' => 'cqu', 'AUR62028886' => 'cqu', 'AUR62029563' => 'cqu', 'AUR62038832' => 'cqu', 'BcaB01g04149' => 'bca', 'BcaB03g12940' => 'bca', 'BcaB03g13090' => 'bca', 'BcaB03g14466' => 'bca', 'BcaB05g24035' => 'bca', 'BcaC01g06050' => 'bca', 'BcaC04g19148' => 'bca', 'BcaC04g20761' => 'bca', 'BcaC06g32845' => 'bca', 'BcaC07g41274' => 'bca', 'BcaC09g50827' => 'bca', 'BcaNung00741' => 'bca', 'BcaNung00742' => 'bca', 'BcaNung01859' => 'bca', 'BcaNung03985' => 'bca', 'BcaNung03989' => 'bca', 'BcaNung05661' => 'bca', 'BolC1t00257H' => 'bol', 'BolC1t01956H' => 'bol', 'BolC2t06534H' => 'bol', 'BolC3t14334H' => 'bol', 'BolC5t30451H' => 'bol', 'BolC7t45880H' => 'bol', 'BolC7t46586H' => 'bol', 'BolC8t49301H' => 'bol', 'BolC8t51837H' => 'bol', 'BolC9t56822H' => 'bol', 'BolC9t59235H' => 'bol', 'BraA01t00234Z' => 'bra', 'BraA01t01563Z' => 'bra', 'BraA02t05147Z' => 'bra', 'BraA03t10947Z' => 'bra', 'BraA03t14633Z' => 'bra', 'BraA08t35112Z' => 'bra', 'BraA09t41330Z' => 'bra', 'BraA10t44570Z' => 'bra', 'C01p02670' => 'bna', 'C01p20260' => 'bna', 'C02p05890' => 'bna', 'C03p19530' => 'bna', 'C05p17470' => 'bna', 'C07p53900' => 'bna', 'C07p61630' => 'bna', 'C08p16800' => 'bna', 'C08p42810' => 'bna', 'C09p39480' => 'bna', 'C09p63980' => 'bna', 'CAN.G1001.7' => 'can', 'CAN.G1034.55' => 'can', 'CAN.G143.7' => 'can', 'CAN.G3340.1' => 'can', 'CAN.G358.19' => 'can', 'CAN.G373.2' => 'can', 'CAN.G674.16' => 'can', 'CAN.G674.17' => 'can', 'CAN.G674.18' => 'can', 'CAN.G732.2' => 'can', 'CAN.G732.3' => 'can', 'CAN.G993.39' => 'can', 'CANSAT01G2052' => 'cansat', 'CANSAT80G0070' => 'cansat', 'CANSAT80G0483' => 'cansat', 'CANSAT80G0625' => 'cansat', 'CARHR019690' => 'chi', 'CARHR080280' => 'chi', 'CARHR152750' => 'chi', 'CARHR152760' => 'chi', 'CARHR152770' => 'chi', 'CARHR200340' => 'chi', 'CARHR232370' => 'chi', 'CARHR244670' => 'chi', 'CARHR244680' => 'chi', 'CARHR257520' => 'chi', 'Carub.0001s1872' => 'cru', 'Carub.0006s1130' => 'cru', 'Carub.0007s0396' => 'cru', 'Carub.0007s0397' => 'cru', 'Carub.0007s1608' => 'cru', 'Carub.0008s1068' => 'cru', 'Carub.0008s1077' => 'cru', 'Ca_16158_v3' => 'car', 'Ca_17571_v3' => 'car', 'Ca_21936_v3' => 'car', 'Ca_22350_v3' => 'car', 'CBR_g22445' => 'cbr', 'CBR_g26290' => 'cbr', 'Cc04_g09610' => 'ccan', 'Cc04_g12280' => 'ccan', 'Cc07_g10230' => 'ccan', 'CDE02G0093' => 'cde', 'CDE02G0701' => 'cde', 'CDE04G1050' => 'cde', 'CDE05G1833' => 'cde', 'CDE05G3058' => 'cde', 'CDE05G3380' => 'cde', 'CDE06G0536' => 'cde', 'Cfa006923' => 'cfa', 'Cfa009402' => 'cfa', 'Cfa018751' => 'cfa', 'Cfa019164' => 'cfa', 'Cfa022935' => 'cfa', 'Ciclev10019081m.g' => 'ccl', 'Ciclev10025076m.g' => 'ccl', 'Ciclev10030712m.g' => 'ccl', 'Ciclev10033760m.g' => 'ccl', 'CiPaw.05G105600' => 'cil', 'CiPaw.08G136700' => 'cil', 'CiPaw.11G003900' => 'cil', 'CiPaw.11G023700' => 'cil', 'CiPaw.12G003700' => 'cil', 'ClCG06G017100' => 'cla', 'ClCG06G018110' => 'cla', 'ClCG07G008800' => 'cla', 'ClCG07G015330' => 'cla', 'COL.COLO4_13698' => 'col', 'COL.COLO4_16659' => 'col', 'COL.COLO4_21986' => 'col', 'COL.COLO4_24049' => 'col', 'COL.COLO4_29061' => 'col', 'COL.COLO4_29075' => 'col', 'COL.COLO4_30094' => 'col', 'Cpa.g.c33689' => 'cpa', 'Cpa.g.sc108.39' => 'cpa', 'Cpa.g.sc108.41' => 'cpa', 'Cpa.g.sc1163.1' => 'cpa', 'Cpa.g.sc4.155' => 'cpa', 'Cpa.g.sc6.194' => 'cpa', 'CsaV3_1G000340' => 'csa', 'CsaV3_1G001400' => 'csa', 'CsaV3_4G002220' => 'csa', 'CsaV3_4G005370' => 'csa', 'CSS0007487' => 'camsi', 'CSS0008066' => 'camsi', 'CSS0009120' => 'camsi', 'CSS0015512' => 'camsi', 'CSS0022409' => 'camsi', 'CSS0025358' => 'camsi', 'CSS0044547' => 'camsi', 'DCAR_013057' => 'dca', 'DCAR_015058' => 'dca', 'DCAR_016027' => 'dca', 'DCAR_017327' => 'dca', 'DCAR_020743' => 'dca', 'DCAR_026157' => 'dca', 'DCAR_032339' => 'dca', 'DCAR_032340' => 'dca', 'Dinv11200' => 'din', 'Dinv11201' => 'din', 'Dinv20631' => 'din', 'Dinv23182' => 'din', 'Dinv33466' => 'din', 'Dinv33583' => 'din', 'Dinv38565' => 'din', 'Duzib068G0200' => 'dzi', 'Duzib147G0132' => 'dzi', 'Duzib147G0635' => 'dzi', 'Duzib205G1670' => 'dzi', 'Duzib251G0606' => 'dzi', 'ECA232G3336' => 'eca', 'ECA232G3763' => 'eca', 'ECA232G4845' => 'eca', 'ECA234G1607' => 'eca', 'ECA246G0932' => 'eca', 'ECA247G0781' => 'eca', 'ECA247G1932' => 'eca', 'ECA247G2079' => 'eca', 'ECA247G3338' => 'eca', 'ECA247G4115' => 'eca', 'EL10Ac3g06552' => 'bvu', 'EL10Ac5g10721' => 'bvu', 'EL10Ac5g10722' => 'bvu', 'EL10Ac5g10723' => 'bvu', 'EL10Ac5g11361' => 'bvu', 'EL10Ac6g13553' => 'bvu', 'EL10As8g23872' => 'bvu', 'Eucgr.B00250' => 'egr', 'Eucgr.B00251' => 'egr', 'Eucgr.B03533' => 'egr', 'Eucgr.I02381' => 'egr', 'Eucgr.K02700' => 'egr', 'FAN02G0174' => 'fan', 'FAN02G3146' => 'fan', 'FAN04G1672' => 'fan', 'FAN04G2273' => 'fan', 'FAN05G2791' => 'fan', 'FAN05G4035' => 'fan', 'FAN07G0834' => 'fan', 'FAN08G1198' => 'fan', 'FAN09G4182' => 'fan', 'FAN12G0496' => 'fan', 'FAN13G1027' => 'fan', 'FAN13G2951' => 'fan', 'FAN14G0705' => 'fan', 'FAN14G0720' => 'fan', 'FAN17G0201' => 'fan', 'FAN17G2665' => 'fan', 'FAN18G1456' => 'fan', 'FAN18G1525' => 'fan', 'FAN18G3500' => 'fan', 'FAN28G2670' => 'fan', 'FvH4_1g12391' => 'fve', 'FvH4_4g23220' => 'fve', 'FvH4_5g08810' => 'fve', 'FvH4_5g28960' => 'fve', 'FvH4_6g42820' => 'fve', 'FvH4_6g51110' => 'fve', 'Glyma.02G051802' => 'gma', 'Glyma.04G185300' => 'gma', 'Glyma.05G202900' => 'gma', 'Glyma.08G010300' => 'gma', 'Glyma.16G131900' => 'gma', 'Glyma.17G087900' => 'gma', 'Gohir.A07G048600' => 'ghi', 'Gohir.A11G179000' => 'ghi', 'Gohir.A12G140900' => 'ghi', 'Gohir.A12G140950' => 'ghi', 'Gohir.A12G191700' => 'ghi', 'Gohir.A13G086300' => 'ghi', 'Gohir.D07G052900' => 'ghi', 'Gohir.D11G186600' => 'ghi', 'Gohir.D12G145575' => 'ghi', 'Gohir.D12G145650' => 'ghi', 'Gohir.D12G145725' => 'ghi', 'Gohir.D12G194050' => 'ghi', 'Gohir.D13G091800' => 'ghi', 'Gorai.001G055900' => 'gra', 'Gorai.007G198400' => 'gra', 'Gorai.008G157000' => 'gra', 'Gorai.008G157100' => 'gra', 'Gorai.008G208700' => 'gra', 'Gorai.010G138700' => 'gra', 'GSVIVG01000977001' => 'vvi', 'GSVIVG01007708001' => 'vvi', 'GSVIVG01008587001' => 'vvi', 'GSVIVG01018849001' => 'vvi', 'GSVIVG01032432001' => 'vvi', 'HanXRQChr02g0034131' => 'han', 'HanXRQChr02g0035981' => 'han', 'HanXRQChr02g0035991' => 'han', 'HanXRQChr05g0155611' => 'han', 'HanXRQChr05g0155621' => 'han', 'HanXRQChr08g0236501' => 'han', 'HanXRQChr09g0261321' => 'han', 'HanXRQChr09g0272081' => 'han', 'HanXRQChr10g0310741' => 'han', 'HanXRQChr11g0325591' => 'han', 'HanXRQChr12g0385691' => 'han', 'HanXRQChr13g0387801' => 'han', 'HanXRQChr15g0463011' => 'han', 'Haze_03826' => 'cav', 'Haze_03827' => 'cav', 'Haze_07183' => 'cav', 'Haze_07537' => 'cav', 'Haze_07539' => 'cav', 'Haze_12461' => 'cav', 'Haze_16115' => 'cav', 'Haze_16808' => 'cav', 'Haze_18531' => 'cav', 'Hma1.2p1_0046F.1_g026700' => 'hma', 'Hma1.2p1_0046F.1_g026710' => 'hma', 'Hma1.2p1_0168F.1_g074340' => 'hma', 'Hma1.2p1_0266F.1_g107030' => 'hma', 'Hma1.2p1_0266F.1_g107060' => 'hma', 'Hma1.2p1_0275F.1_g110510' => 'hma', 'Hma1.2p1_0592F.1_g185490' => 'hma', 'Hma1.2p1_0592F.1_g185500' => 'hma', 'Hma1.2p1_0592F.1_g185510' => 'hma', 'Hma1.2p1_0592F.1_g185520' => 'hma', 'Hma1.2p1_0592F.1_g185530' => 'hma', 'Hma1.2p1_0818F.1_g223450' => 'hma', 'HPP92_009708' => 'vpl', 'HPP92_009793' => 'vpl', 'HPP92_009796' => 'vpl', 'HPP92_009797' => 'vpl', 'HPP92_014940' => 'vpl', 'HPP92_014988' => 'vpl', 'Hund02463' => 'sun', 'Hund02760' => 'sun', 'Hund05071' => 'sun', 'Hund10108' => 'sun', 'Hund11204' => 'sun', 'Hund14016' => 'sun', 'Hund16464' => 'sun', 'Lalb_Chr09g0333391' => 'lal', 'Lalb_Chr11g0070461' => 'lal', 'Lalb_Chr12g0201671' => 'lal', 'Lalb_Chr13g0297161' => 'lal', 'Lj1g0002823' => 'lja', 'Lj3C1074T6' => 'lonja', 'Lj4A212T28' => 'lonja', 'Lj4g0005516' => 'lja', 'Lj4g0013705' => 'lja', 'Lj4g0027865' => 'lja', 'Lj5C92G16' => 'lonja', 'Lj5C92T12' => 'lonja', 'Lj7C596T3' => 'lonja', 'Lj9A446G59' => 'lonja', 'Lj9A482G21' => 'lonja', 'Lsat_1_v5_gn_1_28261' => 'lsa', 'Lsat_1_v5_gn_1_28281' => 'lsa', 'Lsat_1_v5_gn_1_32721' => 'lsa', 'Lsat_1_v5_gn_4_151760' => 'lsa', 'Lsat_1_v5_gn_4_2120' => 'lsa', 'Lsat_1_v5_gn_4_75761' => 'lsa', 'Lsat_1_v5_gn_5_10920' => 'lsa', 'Manes.02G099900' => 'mes', 'Manes.11G096200' => 'mes', 'Manes.12G007200' => 'mes', 'Manes.14G048300' => 'mes', 'Manes.17G114700' => 'mes', 'Mapoly0002s0070' => 'mpo', 'Mapoly0029s0099' => 'mpo', 'MBI07_g24742_MAGBIO' => 'mbi', 'MBI10_g27988_MAGBIO' => 'mbi', 'MBI11_g13057_MAGBIO' => 'mbi', 'MD02G1137200' => 'mdo', 'MD06G1137200' => 'mdo', 'MD07G1122300' => 'mdo', 'MD09G1078200' => 'mdo', 'MD13G1123700' => 'mdo', 'MD14G1151900' => 'mdo', 'MD17G1030900' => 'mdo', 'MD17G1068200' => 'mdo', 'MD17G1068600' => 'mdo', 'Medtr3g077540' => 'mtr', 'Medtr4g105530' => 'mtr', 'Medtr8g076580' => 'mtr', 'Medtr8g076590' => 'mtr', 'Medtr8g096410' => 'mtr', 'MELO3C016411.2' => 'cme', 'MELO3C017780.2' => 'cme', 'MELO3C022560.2' => 'cme', 'MELO3C026187.2' => 'cme', 'MELO3C026286.2' => 'cme', 'MELO3C032854.2' => 'cme', 'Migut.H02495' => 'egut', 'Migut.I00561' => 'egut', 'Migut.K01015' => 'egut', 'Migut.K01016' => 'egut', 'Migut.L00743' => 'egut', 'Migut.L00744' => 'egut', 'Migut.L00746' => 'egut', 'Migut.L00798' => 'egut', 'Migut.L00799' => 'egut', 'Migut.N02096' => 'egut', 'MSTRG.11259' => 'ama', 'MSTRG.23142' => 'ama', 'MSTRG.2499' => 'ama', 'Nitab4.5_0000003g0730' => 'nta', 'Nitab4.5_0000137g0020' => 'nta', 'Nitab4.5_0000721g0210' => 'nta', 'Nitab4.5_0000723g0050' => 'nta', 'Nitab4.5_0000913g0070' => 'nta', 'Nitab4.5_0001332g0040' => 'nta', 'Nitab4.5_0001771g0050' => 'nta', 'Nitab4.5_0001918g0050' => 'nta', 'Nitab4.5_0002686g0030' => 'nta', 'Nitab4.5_0003156g0020' => 'nta', 'Nitab4.5_0003383g0040' => 'nta', 'Nitab4.5_0003918g0010' => 'nta', 'Nitab4.5_0006760g0010' => 'nta', 'Nn1g05981' => 'nnu', 'Nn1g06288' => 'nnu', 'Nn3g16371' => 'nnu', 'Nn3g16786' => 'nnu', 'Nn4g22232' => 'nnu', 'Oeu005144.1' => 'oeu', 'Oeu005145.1' => 'oeu', 'Oeu011348.1' => 'oeu', 'Oeu016415.1' => 'oeu', 'Oeu023501.1' => 'oeu', 'Oeu044473.1' => 'oeu', 'Oeu048892.2' => 'oeu', 'Os01g0549200' => 'osa', 'Os02g0469300' => 'osa', 'Os04g0311100' => 'osa', 'Os06g0474900' => 'osa', 'Os10g0181700' => 'osa', 'Os11g0454800' => 'osa', 'Peaxi162Scf00037g00714' => 'pax', 'Peaxi162Scf00084g01217' => 'pax', 'Peaxi162Scf00257g00217' => 'pax', 'Peaxi162Scf00516g00215' => 'pax', 'Peaxi162Scf00689g00123' => 'pax', 'PGR044G2719' => 'pgr', 'PGR083G1360' => 'pgr', 'PGR102G2849' => 'pgr', 'PGR119G2534' => 'pgr', 'PGSC0003DMG400003538' => 'stu', 'PGSC0003DMG400028138' => 'stu', 'PGSC0003DMG400031732' => 'stu', 'PGSC0003DMG400038165' => 'stu', 'Phvul.002G284600' => 'pvu', 'Phvul.003G258200' => 'pvu', 'Phvul.009G176500' => 'pvu', 'Potri.003G167201' => 'ptr', 'Potri.005G118400' => 'ptr', 'Potri.012G089000' => 'ptr', 'Potri.012G102800' => 'ptr', 'Potri.015G079400' => 'ptr', 'Potri.015G100900' => 'ptr', 'Pp3c14_9810' => 'ppa', 'Pp3c15_10450' => 'ppa', 'Pp3c20_19150' => 'ppa', 'Pp3c23_12740' => 'ppa', 'Pp3c23_6310' => 'ppa', 'Pp3c24_3720' => 'ppa', 'Pp3c27_2580' => 'ppa', 'Pp3c9_8990' => 'ppa', 'PRCOL_00002854' => 'pco', 'Prupe.1G221200' => 'ppe', 'Prupe.3G289000' => 'ppe', 'Prupe.5G147000' => 'ppe', 'Prupe.6G157300' => 'ppe', 'Prupe.7G163400' => 'ppe', 'Psat0s2177g0040' => 'psa', 'Psat3g174760' => 'psa', 'Psat3g192160' => 'psa', 'Psat4g058520' => 'psa', 'Psat4g096840' => 'psa', 'Psat7g037320' => 'psa', 'PSO017G1274' => 'pso', 'PSO017G5166' => 'pso', 'PSO063G4558' => 'pso', 'PSO170G4458' => 'pso', 'PSO170G5005' => 'pso', 'PSO210G6156' => 'pso', 'PSO210G6635' => 'pso', 'PSO210G7397' => 'pso', 'PSO210G7700' => 'pso', 'PSO455G0035' => 'pso', 'PSO455G0180' => 'pso', 'PSO478G4515' => 'pso', 'PSO832G1305' => 'pso', 'PSO832G3489' => 'pso', 'QL02p075247' => 'qlo', 'QL03p051148' => 'qlo', 'QL05p010313' => 'qlo', 'QL06p034627' => 'qlo', 'QL10p001889' => 'qlo', 'QL10p010846' => 'qlo', 'RcHm_v2.0_Chr1g0350621' => 'rch', 'RcHm_v2.0_Chr1g0350641' => 'rch', 'RcHm_v2.0_Chr2g0092891' => 'rch', 'RcHm_v2.0_Chr2g0100251' => 'rch', 'RcHm_v2.0_Chr2g0158661' => 'rch', 'RcHm_v2.0_Chr2g0172741' => 'rch', 'RcHm_v2.0_Chr4g0429571' => 'rch', 'RcHm_v2.0_Chr5g0042471' => 'rch', 'RcHm_v2.0_Chr7g0189451' => 'rch', 'Rhsim08G0052000' => 'rsi', 'Rhsim08G0174400' => 'rsi', 'Rhsim08G0193200' => 'rsi', 'Rhsim10G0214800' => 'rsi', 'Rhsim10G0214900' => 'rsi', 'Rhsim10G0215000' => 'rsi', 'Rhsim12G0022900' => 'rsi', 'Rhsim12G0177500' => 'rsi', 'Rhsim12G0177700' => 'rsi', 'Sabra03G0122600' => 'sbr', 'Sabra05G0097400' => 'sbr', 'Sabra12G0064100' => 'sbr', 'Sabra15G0121300' => 'sbr', 'SalBow2G0642' => 'sbo', 'SalBow5G2667' => 'sbo', 'SalBow5G4873' => 'sbo', 'SalBow8G2395' => 'sbo', 'Sc03g0003290' => 'sci', 'Sc10g0010130' => 'sci', 'Sc22g0003650' => 'sci', 'Sed0001603' => 'sed', 'Sed0004259' => 'sed', 'Sed0006789' => 'sed', 'Sed0011838' => 'sed', 'Sed0012964' => 'sed', 'Sed0016383' => 'sed', 'Sed0019010' => 'sed', 'Sed0020188' => 'sed', 'SEGI_04702' => 'sgi', 'SEGI_17231' => 'sgi', 'SEGI_18877' => 'sgi', 'SEGI_25196' => 'sgi', 'SEGI_25515' => 'sgi', 'SEGI_28445' => 'sgi', 'SEGI_37452' => 'sgi', 'SGA_v2.0_scaffold188G40336' => 'sas', 'SGA_v2.0_scaffold228G43247' => 'sas', 'SGA_v2.0_scaffold280G46853' => 'sas', 'SGA_v2.0_scaffold34G13808' => 'sas', 'SGA_v2.0_scaffold40G15576' => 'sas', 'SGA_v2.0_scaffold611G53188' => 'sas', 'SGA_v2.0_scaffold78G25461' => 'sas', 'SGA_v2.0_scaffold90G27888' => 'sas', 'SHI08601' => 'shi', 'SHI08606' => 'shi', 'SHI17117' => 'shi', 'SHI17119' => 'shi', 'SMO118G0201' => 'smo', 'SMO169G0247' => 'smo', 'SMO176G0006' => 'smo', 'SMO176G0015' => 'smo', 'SMO202G0006' => 'smo', 'SMO240G0050' => 'smo', 'SMO286G0009' => 'smo', 'SMO338G0033' => 'smo', 'SMO356G0533' => 'smo', 'SMO364G0382' => 'smo', 'SMO367G0166' => 'smo', 'SMO367G1098' => 'smo', 'Solyc01g009920.3' => 'sly', 'Solyc01g099300.3' => 'sly', 'Solyc02g084700.3' => 'sly', 'Solyc03g097520.3' => 'sly', 'Solyc06g071580.3' => 'sly', 'Solyc10g081760.3' => 'sly', 'Sopen01g005480' => 'spe', 'Sopen01g042850' => 'spe', 'Sopen02g029370' => 'spe', 'Sopen03g028280' => 'spe', 'Sopen06g027870' => 'spe', 'Sopen10g032270' => 'spe', 'Sp5g18180' => 'spa', 'Sp6g12880' => 'spa', 'Sp6g30850' => 'spa', 'Sp7g22960' => 'spa', 'Sp7g34010' => 'spa', 'SpUn1326_0010' => 'spa', 'TAR371G0242' => 'tar', 'TAR622G0638' => 'tar', 'TAR628G1548' => 'tar', 'TAR629G1079' => 'tar', 'TAR629G3413' => 'tar', 'THA.LOC104804249' => 'tha', 'THA.LOC104808315' => 'tha', 'THA.LOC104809238' => 'tha', 'THA.LOC104825484' => 'tha', 'Thecc.01G025500' => 'tca', 'Thecc.03G015800' => 'tca', 'Thecc.03G018000' => 'tca', 'Thecc.03G134800' => 'tca', 'Thecc.04G014700' => 'tca', 'Thhalv10006991m.g' => 'esa', 'Thhalv10012707m.g' => 'esa', 'Thhalv10015739m.g' => 'esa', 'Thhalv10024553m.g' => 'esa', 'Thhalv10024673m.g' => 'esa', 'Thhalv10029187m.g' => 'esa', 'TPR.G12971' => 'tpr', 'TPR.G29396' => 'tpr', 'TPR.G33376' => 'tpr', 'TPR.G35508' => 'tpr', 'TPR.G35516' => 'tpr', 'TPR.G37317' => 'tpr', 'TPR.G37389' => 'tpr', 'TPR.G37523' => 'tpr', 'TPR.G559' => 'tpr', 'TWI14G0070' => 'twi', 'TWI14G0729' => 'twi', 'TWI18G0596' => 'twi', 'TWI39G0780' => 'twi', 'TWI39G0850' => 'twi', 'TWI73G1052' => 'twi', 'unitig_52.g17485' => 'ugi', 'unitig_61.g26355' => 'ugi', 'vmacro01040' => 'vma', 'vmacro16731' => 'vma', 'vmacro18270' => 'vma', 'vmacro19142' => 'vma', 'vmacro19407' => 'vma', 'vmacro19408' => 'vma', 'vmacro21899' => 'vma', 'vmacro21900' => 'vma', 'vmacro21901' => 'vma', 'VMungo0251G0490' => 'vmu', 'VMungo0251G1748' => 'vmu', 'VMungo1309G0421' => 'vmu', 'Zm00001eb086500' => 'zma', 'Zm00001eb150680' => 'zma', 'Zm00001eb162330' => 'zma', 'Zm00001eb203130' => 'zma', 'Zm00001eb369480' => 'zma', 'Zm00001eb382340' => 'zma', 'Zm00001eb416360' => 'zma' ), 'gf_id' => 'HOM05D000902', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000902' ), 'data_identifier' => 'HOM05D000902', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000902', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '663', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02470' => 'bna', 'A01p16260' => 'bna', 'A02p01680' => 'bna', 'A03p16600' => 'bna', 'A03p55660' => 'bna', 'A03p64160' => 'bna', 'A03p64170' => 'bna', 'A08p31900' => 'bna', 'A09p59530' => 'bna', 'A10p08230' => 'bna', 'A10p25090' => 'bna', 'Aa31LG3G7100' => 'aar', 'Aa31LG3G7110' => 'aar', 'Aa31LG6G13160' => 'aar', 'Aa31LG7G10770' => 'aar', 'Aa31LG7G3830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2723' => 'aag', 'Actinidia08045' => 'ach', 'Actinidia08888' => 'ach', 'Actinidia18333' => 'ach', 'Actinidia19334' => 'ach', 'Actinidia25552' => 'ach', 'Actinidia26089' => 'ach', 'Actinidia30615' => 'ach', 'Actinidia30616' => 'ach', 'Actinidia33083' => 'ach', 'Actinidia35762' => 'ach', 'Ah.02g110620' => 'amhyb', 'Ah.11g046390' => 'amhyb', 'AL1G31670' => 'aly', 'AL6G23730' => 'aly', 'AL7G14740' => 'aly', 'AL7G14750' => 'aly', 'AL7G14760' => 'aly', 'AL7G28220' => 'aly', 'AL8G24940' => 'aly', 'Aqoxy3G01665' => 'aox', 'Aqoxy3G02853' => 'aox', 'Aqoxy5G01513' => 'aox', 'Aqoxy5G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8SKA4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ75LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKDA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0LJZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7REX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZP4YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWX7I5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2QKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS0L9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPCD8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q161UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC7XCF' => 'arhy', 'AT1G19100' => 'ath', 'AT4G24970' => 'ath', 'AT4G36270' => 'ath', 'AT4G36280' => 'ath', 'AT4G36290' => 'ath', 'AT5G13130' => 'ath', 'AT5G50780' => 'ath', 'ATR0582G266' => 'atr', 'ATR0661G195' => 'atr', 'ATR1152G031' => 'atr', 'Atru.chr11.2382' => 'acertr', 'Atru.chr12.2337' => 'acertr', 'Atru.chr3.744' => 'acertr', 'Atru.chr6.1870' => 'acertr', 'Atru.chr9.2515' => 'acertr', 'AUR62004120' => 'cqu', 'AUR62005667' => 'cqu', 'AUR62007634' => 'cqu', 'AUR62008186' => 'cqu', 'AUR62008187' => 'cqu', 'AUR62008188' => 'cqu', 'AUR62027954' => 'cqu', 'AUR62028766' => 'cqu', 'AUR62028767' => 'cqu', 'AUR62028768' => 'cqu', 'AUR62028886' => 'cqu', 'AUR62029563' => 'cqu', 'AUR62038832' => 'cqu', 'BcaB01g04149' => 'bca', 'BcaB03g12940' => 'bca', 'BcaB03g13090' => 'bca', 'BcaB03g14466' => 'bca', 'BcaB05g24035' => 'bca', 'BcaC01g06050' => 'bca', 'BcaC04g19148' => 'bca', 'BcaC04g20761' => 'bca', 'BcaC06g32845' => 'bca', 'BcaC07g41274' => 'bca', 'BcaC09g50827' => 'bca', 'BcaNung00741' => 'bca', 'BcaNung00742' => 'bca', 'BcaNung01859' => 'bca', 'BcaNung03985' => 'bca', 'BcaNung03989' => 'bca', 'BcaNung05661' => 'bca', 'BolC1t00257H' => 'bol', 'BolC1t01956H' => 'bol', 'BolC2t06534H' => 'bol', 'BolC3t14334H' => 'bol', 'BolC5t30451H' => 'bol', 'BolC7t45880H' => 'bol', 'BolC7t46586H' => 'bol', 'BolC8t49301H' => 'bol', 'BolC8t51837H' => 'bol', 'BolC9t56822H' => 'bol', 'BolC9t59235H' => 'bol', 'BraA01t00234Z' => 'bra', 'BraA01t01563Z' => 'bra', 'BraA02t05147Z' => 'bra', 'BraA03t10947Z' => 'bra', 'BraA03t14633Z' => 'bra', 'BraA08t35112Z' => 'bra', 'BraA09t41330Z' => 'bra', 'BraA10t44570Z' => 'bra', 'C01p02670' => 'bna', 'C01p20260' => 'bna', 'C02p05890' => 'bna', 'C03p19530' => 'bna', 'C05p17470' => 'bna', 'C07p53900' => 'bna', 'C07p61630' => 'bna', 'C08p16800' => 'bna', 'C08p42810' => 'bna', 'C09p39480' => 'bna', 'C09p63980' => 'bna', 'CAN.G1001.7' => 'can', 'CAN.G1034.55' => 'can', 'CAN.G143.7' => 'can', 'CAN.G3340.1' => 'can', 'CAN.G358.19' => 'can', 'CAN.G373.2' => 'can', 'CAN.G674.16' => 'can', 'CAN.G674.17' => 'can', 'CAN.G674.18' => 'can', 'CAN.G732.2' => 'can', 'CAN.G732.3' => 'can', 'CAN.G993.39' => 'can', 'CANSAT01G2052' => 'cansat', 'CANSAT80G0070' => 'cansat', 'CANSAT80G0483' => 'cansat', 'CANSAT80G0625' => 'cansat', 'CARHR019690' => 'chi', 'CARHR080280' => 'chi', 'CARHR152750' => 'chi', 'CARHR152760' => 'chi', 'CARHR152770' => 'chi', 'CARHR200340' => 'chi', 'CARHR232370' => 'chi', 'CARHR244670' => 'chi', 'CARHR244680' => 'chi', 'CARHR257520' => 'chi', 'Carub.0001s1872' => 'cru', 'Carub.0006s1130' => 'cru', 'Carub.0007s0396' => 'cru', 'Carub.0007s0397' => 'cru', 'Carub.0007s1608' => 'cru', 'Carub.0008s1068' => 'cru', 'Carub.0008s1077' => 'cru', 'Ca_16158_v3' => 'car', 'Ca_17571_v3' => 'car', 'Ca_21936_v3' => 'car', 'Ca_22350_v3' => 'car', 'CBR_g22445' => 'cbr', 'CBR_g26290' => 'cbr', 'Cc04_g09610' => 'ccan', 'Cc04_g12280' => 'ccan', 'Cc07_g10230' => 'ccan', 'CDE02G0093' => 'cde', 'CDE02G0701' => 'cde', 'CDE04G1050' => 'cde', 'CDE05G1833' => 'cde', 'CDE05G3058' => 'cde', 'CDE05G3380' => 'cde', 'CDE06G0536' => 'cde', 'Cfa006923' => 'cfa', 'Cfa009402' => 'cfa', 'Cfa018751' => 'cfa', 'Cfa019164' => 'cfa', 'Cfa022935' => 'cfa', 'Ciclev10019081m.g' => 'ccl', 'Ciclev10025076m.g' => 'ccl', 'Ciclev10030712m.g' => 'ccl', 'Ciclev10033760m.g' => 'ccl', 'CiPaw.05G105600' => 'cil', 'CiPaw.08G136700' => 'cil', 'CiPaw.11G003900' => 'cil', 'CiPaw.11G023700' => 'cil', 'CiPaw.12G003700' => 'cil', 'ClCG06G017100' => 'cla', 'ClCG06G018110' => 'cla', 'ClCG07G008800' => 'cla', 'ClCG07G015330' => 'cla', 'COL.COLO4_13698' => 'col', 'COL.COLO4_16659' => 'col', 'COL.COLO4_21986' => 'col', 'COL.COLO4_24049' => 'col', 'COL.COLO4_29061' => 'col', 'COL.COLO4_29075' => 'col', 'COL.COLO4_30094' => 'col', 'Cpa.g.c33689' => 'cpa', 'Cpa.g.sc108.39' => 'cpa', 'Cpa.g.sc108.41' => 'cpa', 'Cpa.g.sc1163.1' => 'cpa', 'Cpa.g.sc4.155' => 'cpa', 'Cpa.g.sc6.194' => 'cpa', 'CsaV3_1G000340' => 'csa', 'CsaV3_1G001400' => 'csa', 'CsaV3_4G002220' => 'csa', 'CsaV3_4G005370' => 'csa', 'CSS0007487' => 'camsi', 'CSS0008066' => 'camsi', 'CSS0009120' => 'camsi', 'CSS0015512' => 'camsi', 'CSS0022409' => 'camsi', 'CSS0025358' => 'camsi', 'CSS0044547' => 'camsi', 'DCAR_013057' => 'dca', 'DCAR_015058' => 'dca', 'DCAR_016027' => 'dca', 'DCAR_017327' => 'dca', 'DCAR_020743' => 'dca', 'DCAR_026157' => 'dca', 'DCAR_032339' => 'dca', 'DCAR_032340' => 'dca', 'Dinv11200' => 'din', 'Dinv11201' => 'din', 'Dinv20631' => 'din', 'Dinv23182' => 'din', 'Dinv33466' => 'din', 'Dinv33583' => 'din', 'Dinv38565' => 'din', 'Duzib068G0200' => 'dzi', 'Duzib147G0132' => 'dzi', 'Duzib147G0635' => 'dzi', 'Duzib205G1670' => 'dzi', 'Duzib251G0606' => 'dzi', 'ECA232G3336' => 'eca', 'ECA232G3763' => 'eca', 'ECA232G4845' => 'eca', 'ECA234G1607' => 'eca', 'ECA246G0932' => 'eca', 'ECA247G0781' => 'eca', 'ECA247G1932' => 'eca', 'ECA247G2079' => 'eca', 'ECA247G3338' => 'eca', 'ECA247G4115' => 'eca', 'EL10Ac3g06552' => 'bvu', 'EL10Ac5g10721' => 'bvu', 'EL10Ac5g10722' => 'bvu', 'EL10Ac5g10723' => 'bvu', 'EL10Ac5g11361' => 'bvu', 'EL10Ac6g13553' => 'bvu', 'EL10As8g23872' => 'bvu', 'Eucgr.B00250' => 'egr', 'Eucgr.B00251' => 'egr', 'Eucgr.B03533' => 'egr', 'Eucgr.I02381' => 'egr', 'Eucgr.K02700' => 'egr', 'FAN02G0174' => 'fan', 'FAN02G3146' => 'fan', 'FAN04G1672' => 'fan', 'FAN04G2273' => 'fan', 'FAN05G2791' => 'fan', 'FAN05G4035' => 'fan', 'FAN07G0834' => 'fan', 'FAN08G1198' => 'fan', 'FAN09G4182' => 'fan', 'FAN12G0496' => 'fan', 'FAN13G1027' => 'fan', 'FAN13G2951' => 'fan', 'FAN14G0705' => 'fan', 'FAN14G0720' => 'fan', 'FAN17G0201' => 'fan', 'FAN17G2665' => 'fan', 'FAN18G1456' => 'fan', 'FAN18G1525' => 'fan', 'FAN18G3500' => 'fan', 'FAN28G2670' => 'fan', 'FvH4_1g12391' => 'fve', 'FvH4_4g23220' => 'fve', 'FvH4_5g08810' => 'fve', 'FvH4_5g28960' => 'fve', 'FvH4_6g42820' => 'fve', 'FvH4_6g51110' => 'fve', 'Glyma.02G051802' => 'gma', 'Glyma.04G185300' => 'gma', 'Glyma.05G202900' => 'gma', 'Glyma.08G010300' => 'gma', 'Glyma.16G131900' => 'gma', 'Glyma.17G087900' => 'gma', 'Gohir.A07G048600' => 'ghi', 'Gohir.A11G179000' => 'ghi', 'Gohir.A12G140900' => 'ghi', 'Gohir.A12G140950' => 'ghi', 'Gohir.A12G191700' => 'ghi', 'Gohir.A13G086300' => 'ghi', 'Gohir.D07G052900' => 'ghi', 'Gohir.D11G186600' => 'ghi', 'Gohir.D12G145575' => 'ghi', 'Gohir.D12G145650' => 'ghi', 'Gohir.D12G145725' => 'ghi', 'Gohir.D12G194050' => 'ghi', 'Gohir.D13G091800' => 'ghi', 'Gorai.001G055900' => 'gra', 'Gorai.007G198400' => 'gra', 'Gorai.008G157000' => 'gra', 'Gorai.008G157100' => 'gra', 'Gorai.008G208700' => 'gra', 'Gorai.010G138700' => 'gra', 'GSVIVG01000977001' => 'vvi', 'GSVIVG01007708001' => 'vvi', 'GSVIVG01008587001' => 'vvi', 'GSVIVG01018849001' => 'vvi', 'GSVIVG01032432001' => 'vvi', 'HanXRQChr02g0034131' => 'han', 'HanXRQChr02g0035981' => 'han', 'HanXRQChr02g0035991' => 'han', 'HanXRQChr05g0155611' => 'han', 'HanXRQChr05g0155621' => 'han', 'HanXRQChr08g0236501' => 'han', 'HanXRQChr09g0261321' => 'han', 'HanXRQChr09g0272081' => 'han', 'HanXRQChr10g0310741' => 'han', 'HanXRQChr11g0325591' => 'han', 'HanXRQChr12g0385691' => 'han', 'HanXRQChr13g0387801' => 'han', 'HanXRQChr15g0463011' => 'han', 'Haze_03826' => 'cav', 'Haze_03827' => 'cav', 'Haze_07183' => 'cav', 'Haze_07537' => 'cav', 'Haze_07539' => 'cav', 'Haze_12461' => 'cav', 'Haze_16115' => 'cav', 'Haze_16808' => 'cav', 'Haze_18531' => 'cav', 'Hma1.2p1_0046F.1_g026700' => 'hma', 'Hma1.2p1_0046F.1_g026710' => 'hma', 'Hma1.2p1_0168F.1_g074340' => 'hma', 'Hma1.2p1_0266F.1_g107030' => 'hma', 'Hma1.2p1_0266F.1_g107060' => 'hma', 'Hma1.2p1_0275F.1_g110510' => 'hma', 'Hma1.2p1_0592F.1_g185490' => 'hma', 'Hma1.2p1_0592F.1_g185500' => 'hma', 'Hma1.2p1_0592F.1_g185510' => 'hma', 'Hma1.2p1_0592F.1_g185520' => 'hma', 'Hma1.2p1_0592F.1_g185530' => 'hma', 'Hma1.2p1_0818F.1_g223450' => 'hma', 'HPP92_009708' => 'vpl', 'HPP92_009793' => 'vpl', 'HPP92_009796' => 'vpl', 'HPP92_009797' => 'vpl', 'HPP92_014940' => 'vpl', 'HPP92_014988' => 'vpl', 'Hund02463' => 'sun', 'Hund02760' => 'sun', 'Hund05071' => 'sun', 'Hund10108' => 'sun', 'Hund11204' => 'sun', 'Hund14016' => 'sun', 'Hund16464' => 'sun', 'Lalb_Chr09g0333391' => 'lal', 'Lalb_Chr11g0070461' => 'lal', 'Lalb_Chr12g0201671' => 'lal', 'Lalb_Chr13g0297161' => 'lal', 'Lj1g0002823' => 'lja', 'Lj3C1074T6' => 'lonja', 'Lj4A212T28' => 'lonja', 'Lj4g0005516' => 'lja', 'Lj4g0013705' => 'lja', 'Lj4g0027865' => 'lja', 'Lj5C92G16' => 'lonja', 'Lj5C92T12' => 'lonja', 'Lj7C596T3' => 'lonja', 'Lj9A446G59' => 'lonja', 'Lj9A482G21' => 'lonja', 'Lsat_1_v5_gn_1_28261' => 'lsa', 'Lsat_1_v5_gn_1_28281' => 'lsa', 'Lsat_1_v5_gn_1_32721' => 'lsa', 'Lsat_1_v5_gn_4_151760' => 'lsa', 'Lsat_1_v5_gn_4_2120' => 'lsa', 'Lsat_1_v5_gn_4_75761' => 'lsa', 'Lsat_1_v5_gn_5_10920' => 'lsa', 'Manes.02G099900' => 'mes', 'Manes.11G096200' => 'mes', 'Manes.12G007200' => 'mes', 'Manes.14G048300' => 'mes', 'Manes.17G114700' => 'mes', 'Mapoly0002s0070' => 'mpo', 'Mapoly0029s0099' => 'mpo', 'MBI07_g24742_MAGBIO' => 'mbi', 'MBI10_g27988_MAGBIO' => 'mbi', 'MBI11_g13057_MAGBIO' => 'mbi', 'MD02G1137200' => 'mdo', 'MD06G1137200' => 'mdo', 'MD07G1122300' => 'mdo', 'MD09G1078200' => 'mdo', 'MD13G1123700' => 'mdo', 'MD14G1151900' => 'mdo', 'MD17G1030900' => 'mdo', 'MD17G1068200' => 'mdo', 'MD17G1068600' => 'mdo', 'Medtr3g077540' => 'mtr', 'Medtr4g105530' => 'mtr', 'Medtr8g076580' => 'mtr', 'Medtr8g076590' => 'mtr', 'Medtr8g096410' => 'mtr', 'MELO3C016411.2' => 'cme', 'MELO3C017780.2' => 'cme', 'MELO3C022560.2' => 'cme', 'MELO3C026187.2' => 'cme', 'MELO3C026286.2' => 'cme', 'MELO3C032854.2' => 'cme', 'Migut.H02495' => 'egut', 'Migut.I00561' => 'egut', 'Migut.K01015' => 'egut', 'Migut.K01016' => 'egut', 'Migut.L00743' => 'egut', 'Migut.L00744' => 'egut', 'Migut.L00746' => 'egut', 'Migut.L00798' => 'egut', 'Migut.L00799' => 'egut', 'Migut.N02096' => 'egut', 'MSTRG.11259' => 'ama', 'MSTRG.23142' => 'ama', 'MSTRG.2499' => 'ama', 'Nitab4.5_0000003g0730' => 'nta', 'Nitab4.5_0000137g0020' => 'nta', 'Nitab4.5_0000721g0210' => 'nta', 'Nitab4.5_0000723g0050' => 'nta', 'Nitab4.5_0000913g0070' => 'nta', 'Nitab4.5_0001332g0040' => 'nta', 'Nitab4.5_0001771g0050' => 'nta', 'Nitab4.5_0001918g0050' => 'nta', 'Nitab4.5_0002686g0030' => 'nta', 'Nitab4.5_0003156g0020' => 'nta', 'Nitab4.5_0003383g0040' => 'nta', 'Nitab4.5_0003918g0010' => 'nta', 'Nitab4.5_0006760g0010' => 'nta', 'Nn1g05981' => 'nnu', 'Nn1g06288' => 'nnu', 'Nn3g16371' => 'nnu', 'Nn3g16786' => 'nnu', 'Nn4g22232' => 'nnu', 'Oeu005144.1' => 'oeu', 'Oeu005145.1' => 'oeu', 'Oeu011348.1' => 'oeu', 'Oeu016415.1' => 'oeu', 'Oeu023501.1' => 'oeu', 'Oeu044473.1' => 'oeu', 'Oeu048892.2' => 'oeu', 'Os01g0549200' => 'osa', 'Os02g0469300' => 'osa', 'Os04g0311100' => 'osa', 'Os06g0474900' => 'osa', 'Os10g0181700' => 'osa', 'Os11g0454800' => 'osa', 'Peaxi162Scf00037g00714' => 'pax', 'Peaxi162Scf00084g01217' => 'pax', 'Peaxi162Scf00257g00217' => 'pax', 'Peaxi162Scf00516g00215' => 'pax', 'Peaxi162Scf00689g00123' => 'pax', 'PGR044G2719' => 'pgr', 'PGR083G1360' => 'pgr', 'PGR102G2849' => 'pgr', 'PGR119G2534' => 'pgr', 'PGSC0003DMG400003538' => 'stu', 'PGSC0003DMG400028138' => 'stu', 'PGSC0003DMG400031732' => 'stu', 'PGSC0003DMG400038165' => 'stu', 'Phvul.002G284600' => 'pvu', 'Phvul.003G258200' => 'pvu', 'Phvul.009G176500' => 'pvu', 'Potri.003G167201' => 'ptr', 'Potri.005G118400' => 'ptr', 'Potri.012G089000' => 'ptr', 'Potri.012G102800' => 'ptr', 'Potri.015G079400' => 'ptr', 'Potri.015G100900' => 'ptr', 'Pp3c14_9810' => 'ppa', 'Pp3c15_10450' => 'ppa', 'Pp3c20_19150' => 'ppa', 'Pp3c23_12740' => 'ppa', 'Pp3c23_6310' => 'ppa', 'Pp3c24_3720' => 'ppa', 'Pp3c27_2580' => 'ppa', 'Pp3c9_8990' => 'ppa', 'PRCOL_00002854' => 'pco', 'Prupe.1G221200' => 'ppe', 'Prupe.3G289000' => 'ppe', 'Prupe.5G147000' => 'ppe', 'Prupe.6G157300' => 'ppe', 'Prupe.7G163400' => 'ppe', 'Psat0s2177g0040' => 'psa', 'Psat3g174760' => 'psa', 'Psat3g192160' => 'psa', 'Psat4g058520' => 'psa', 'Psat4g096840' => 'psa', 'Psat7g037320' => 'psa', 'PSO017G1274' => 'pso', 'PSO017G5166' => 'pso', 'PSO063G4558' => 'pso', 'PSO170G4458' => 'pso', 'PSO170G5005' => 'pso', 'PSO210G6156' => 'pso', 'PSO210G6635' => 'pso', 'PSO210G7397' => 'pso', 'PSO210G7700' => 'pso', 'PSO455G0035' => 'pso', 'PSO455G0180' => 'pso', 'PSO478G4515' => 'pso', 'PSO832G1305' => 'pso', 'PSO832G3489' => 'pso', 'QL02p075247' => 'qlo', 'QL03p051148' => 'qlo', 'QL05p010313' => 'qlo', 'QL06p034627' => 'qlo', 'QL10p001889' => 'qlo', 'QL10p010846' => 'qlo', 'RcHm_v2.0_Chr1g0350621' => 'rch', 'RcHm_v2.0_Chr1g0350641' => 'rch', 'RcHm_v2.0_Chr2g0092891' => 'rch', 'RcHm_v2.0_Chr2g0100251' => 'rch', 'RcHm_v2.0_Chr2g0158661' => 'rch', 'RcHm_v2.0_Chr2g0172741' => 'rch', 'RcHm_v2.0_Chr4g0429571' => 'rch', 'RcHm_v2.0_Chr5g0042471' => 'rch', 'RcHm_v2.0_Chr7g0189451' => 'rch', 'Rhsim08G0052000' => 'rsi', 'Rhsim08G0174400' => 'rsi', 'Rhsim08G0193200' => 'rsi', 'Rhsim10G0214800' => 'rsi', 'Rhsim10G0214900' => 'rsi', 'Rhsim10G0215000' => 'rsi', 'Rhsim12G0022900' => 'rsi', 'Rhsim12G0177500' => 'rsi', 'Rhsim12G0177700' => 'rsi', 'Sabra03G0122600' => 'sbr', 'Sabra05G0097400' => 'sbr', 'Sabra12G0064100' => 'sbr', 'Sabra15G0121300' => 'sbr', 'SalBow2G0642' => 'sbo', 'SalBow5G2667' => 'sbo', 'SalBow5G4873' => 'sbo', 'SalBow8G2395' => 'sbo', 'Sc03g0003290' => 'sci', 'Sc10g0010130' => 'sci', 'Sc22g0003650' => 'sci', 'Sed0001603' => 'sed', 'Sed0004259' => 'sed', 'Sed0006789' => 'sed', 'Sed0011838' => 'sed', 'Sed0012964' => 'sed', 'Sed0016383' => 'sed', 'Sed0019010' => 'sed', 'Sed0020188' => 'sed', 'SEGI_04702' => 'sgi', 'SEGI_17231' => 'sgi', 'SEGI_18877' => 'sgi', 'SEGI_25196' => 'sgi', 'SEGI_25515' => 'sgi', 'SEGI_28445' => 'sgi', 'SEGI_37452' => 'sgi', 'SGA_v2.0_scaffold188G40336' => 'sas', 'SGA_v2.0_scaffold228G43247' => 'sas', 'SGA_v2.0_scaffold280G46853' => 'sas', 'SGA_v2.0_scaffold34G13808' => 'sas', 'SGA_v2.0_scaffold40G15576' => 'sas', 'SGA_v2.0_scaffold611G53188' => 'sas', 'SGA_v2.0_scaffold78G25461' => 'sas', 'SGA_v2.0_scaffold90G27888' => 'sas', 'SHI08601' => 'shi', 'SHI08606' => 'shi', 'SHI17117' => 'shi', 'SHI17119' => 'shi', 'SMO118G0201' => 'smo', 'SMO169G0247' => 'smo', 'SMO176G0006' => 'smo', 'SMO176G0015' => 'smo', 'SMO202G0006' => 'smo', 'SMO240G0050' => 'smo', 'SMO286G0009' => 'smo', 'SMO338G0033' => 'smo', 'SMO356G0533' => 'smo', 'SMO364G0382' => 'smo', 'SMO367G0166' => 'smo', 'SMO367G1098' => 'smo', 'Solyc01g009920.3' => 'sly', 'Solyc01g099300.3' => 'sly', 'Solyc02g084700.3' => 'sly', 'Solyc03g097520.3' => 'sly', 'Solyc06g071580.3' => 'sly', 'Solyc10g081760.3' => 'sly', 'Sopen01g005480' => 'spe', 'Sopen01g042850' => 'spe', 'Sopen02g029370' => 'spe', 'Sopen03g028280' => 'spe', 'Sopen06g027870' => 'spe', 'Sopen10g032270' => 'spe', 'Sp5g18180' => 'spa', 'Sp6g12880' => 'spa', 'Sp6g30850' => 'spa', 'Sp7g22960' => 'spa', 'Sp7g34010' => 'spa', 'SpUn1326_0010' => 'spa', 'TAR371G0242' => 'tar', 'TAR622G0638' => 'tar', 'TAR628G1548' => 'tar', 'TAR629G1079' => 'tar', 'TAR629G3413' => 'tar', 'THA.LOC104804249' => 'tha', 'THA.LOC104808315' => 'tha', 'THA.LOC104809238' => 'tha', 'THA.LOC104825484' => 'tha', 'Thecc.01G025500' => 'tca', 'Thecc.03G015800' => 'tca', 'Thecc.03G018000' => 'tca', 'Thecc.03G134800' => 'tca', 'Thecc.04G014700' => 'tca', 'Thhalv10006991m.g' => 'esa', 'Thhalv10012707m.g' => 'esa', 'Thhalv10015739m.g' => 'esa', 'Thhalv10024553m.g' => 'esa', 'Thhalv10024673m.g' => 'esa', 'Thhalv10029187m.g' => 'esa', 'TPR.G12971' => 'tpr', 'TPR.G29396' => 'tpr', 'TPR.G33376' => 'tpr', 'TPR.G35508' => 'tpr', 'TPR.G35516' => 'tpr', 'TPR.G37317' => 'tpr', 'TPR.G37389' => 'tpr', 'TPR.G37523' => 'tpr', 'TPR.G559' => 'tpr', 'TWI14G0070' => 'twi', 'TWI14G0729' => 'twi', 'TWI18G0596' => 'twi', 'TWI39G0780' => 'twi', 'TWI39G0850' => 'twi', 'TWI73G1052' => 'twi', 'unitig_52.g17485' => 'ugi', 'unitig_61.g26355' => 'ugi', 'vmacro01040' => 'vma', 'vmacro16731' => 'vma', 'vmacro18270' => 'vma', 'vmacro19142' => 'vma', 'vmacro19407' => 'vma', 'vmacro19408' => 'vma', 'vmacro21899' => 'vma', 'vmacro21900' => 'vma', 'vmacro21901' => 'vma', 'VMungo0251G0490' => 'vmu', 'VMungo0251G1748' => 'vmu', 'VMungo1309G0421' => 'vmu', 'Zm00001eb086500' => 'zma', 'Zm00001eb150680' => 'zma', 'Zm00001eb162330' => 'zma', 'Zm00001eb203130' => 'zma', 'Zm00001eb369480' => 'zma', 'Zm00001eb382340' => 'zma', 'Zm00001eb416360' => 'zma' ) $gf_id = 'HOM05D000902' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000902' ) $data_identifier = 'HOM05D000902' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 13, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 10, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 6, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 9, 'hma' => (int) 12, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 4, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 6, 'ppa' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 6, 'rch' => (int) 9, 'rsi' => (int) 9, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 12, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 3, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416360' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000902', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '663', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02470' => 'bna', 'A01p16260' => 'bna', 'A02p01680' => 'bna', 'A03p16600' => 'bna', 'A03p55660' => 'bna', 'A03p64160' => 'bna', 'A03p64170' => 'bna', 'A08p31900' => 'bna', 'A09p59530' => 'bna', 'A10p08230' => 'bna', 'A10p25090' => 'bna', 'Aa31LG3G7100' => 'aar', 'Aa31LG3G7110' => 'aar', 'Aa31LG6G13160' => 'aar', 'Aa31LG7G10770' => 'aar', 'Aa31LG7G3830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2723' => 'aag', 'Actinidia08045' => 'ach', 'Actinidia08888' => 'ach', 'Actinidia18333' => 'ach', 'Actinidia19334' => 'ach', 'Actinidia25552' => 'ach', 'Actinidia26089' => 'ach', 'Actinidia30615' => 'ach', 'Actinidia30616' => 'ach', 'Actinidia33083' => 'ach', 'Actinidia35762' => 'ach', 'Ah.02g110620' => 'amhyb', 'Ah.11g046390' => 'amhyb', 'AL1G31670' => 'aly', 'AL6G23730' => 'aly', 'AL7G14740' => 'aly', 'AL7G14750' => 'aly', 'AL7G14760' => 'aly', 'AL7G28220' => 'aly', 'AL8G24940' => 'aly', 'Aqoxy3G01665' => 'aox', 'Aqoxy3G02853' => 'aox', 'Aqoxy5G01513' => 'aox', 'Aqoxy5G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8SKA4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ75LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKDA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0LJZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7REX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZP4YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWX7I5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2QKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS0L9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPCD8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q161UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC7XCF' => 'arhy', 'AT1G19100' => 'ath', 'AT4G24970' => 'ath', 'AT4G36270' => 'ath', 'AT4G36280' => 'ath', 'AT4G36290' => 'ath', 'AT5G13130' => 'ath', 'AT5G50780' => 'ath', 'ATR0582G266' => 'atr', 'ATR0661G195' => 'atr', 'ATR1152G031' => 'atr', 'Atru.chr11.2382' => 'acertr', 'Atru.chr12.2337' => 'acertr', 'Atru.chr3.744' => 'acertr', 'Atru.chr6.1870' => 'acertr', 'Atru.chr9.2515' => 'acertr', 'AUR62004120' => 'cqu', 'AUR62005667' => 'cqu', 'AUR62007634' => 'cqu', 'AUR62008186' => 'cqu', 'AUR62008187' => 'cqu', 'AUR62008188' => 'cqu', 'AUR62027954' => 'cqu', 'AUR62028766' => 'cqu', 'AUR62028767' => 'cqu', 'AUR62028768' => 'cqu', 'AUR62028886' => 'cqu', 'AUR62029563' => 'cqu', 'AUR62038832' => 'cqu', 'BcaB01g04149' => 'bca', 'BcaB03g12940' => 'bca', 'BcaB03g13090' => 'bca', 'BcaB03g14466' => 'bca', 'BcaB05g24035' => 'bca', 'BcaC01g06050' => 'bca', 'BcaC04g19148' => 'bca', 'BcaC04g20761' => 'bca', 'BcaC06g32845' => 'bca', 'BcaC07g41274' => 'bca', 'BcaC09g50827' => 'bca', 'BcaNung00741' => 'bca', 'BcaNung00742' => 'bca', 'BcaNung01859' => 'bca', 'BcaNung03985' => 'bca', 'BcaNung03989' => 'bca', 'BcaNung05661' => 'bca', 'BolC1t00257H' => 'bol', 'BolC1t01956H' => 'bol', 'BolC2t06534H' => 'bol', 'BolC3t14334H' => 'bol', 'BolC5t30451H' => 'bol', 'BolC7t45880H' => 'bol', 'BolC7t46586H' => 'bol', 'BolC8t49301H' => 'bol', 'BolC8t51837H' => 'bol', 'BolC9t56822H' => 'bol', 'BolC9t59235H' => 'bol', 'BraA01t00234Z' => 'bra', 'BraA01t01563Z' => 'bra', 'BraA02t05147Z' => 'bra', 'BraA03t10947Z' => 'bra', 'BraA03t14633Z' => 'bra', 'BraA08t35112Z' => 'bra', 'BraA09t41330Z' => 'bra', 'BraA10t44570Z' => 'bra', 'C01p02670' => 'bna', 'C01p20260' => 'bna', 'C02p05890' => 'bna', 'C03p19530' => 'bna', 'C05p17470' => 'bna', 'C07p53900' => 'bna', 'C07p61630' => 'bna', 'C08p16800' => 'bna', 'C08p42810' => 'bna', 'C09p39480' => 'bna', 'C09p63980' => 'bna', 'CAN.G1001.7' => 'can', 'CAN.G1034.55' => 'can', 'CAN.G143.7' => 'can', 'CAN.G3340.1' => 'can', 'CAN.G358.19' => 'can', 'CAN.G373.2' => 'can', 'CAN.G674.16' => 'can', 'CAN.G674.17' => 'can', 'CAN.G674.18' => 'can', 'CAN.G732.2' => 'can', 'CAN.G732.3' => 'can', 'CAN.G993.39' => 'can', 'CANSAT01G2052' => 'cansat', 'CANSAT80G0070' => 'cansat', 'CANSAT80G0483' => 'cansat', 'CANSAT80G0625' => 'cansat', 'CARHR019690' => 'chi', 'CARHR080280' => 'chi', 'CARHR152750' => 'chi', 'CARHR152760' => 'chi', 'CARHR152770' => 'chi', 'CARHR200340' => 'chi', 'CARHR232370' => 'chi', 'CARHR244670' => 'chi', 'CARHR244680' => 'chi', 'CARHR257520' => 'chi', 'Carub.0001s1872' => 'cru', 'Carub.0006s1130' => 'cru', 'Carub.0007s0396' => 'cru', 'Carub.0007s0397' => 'cru', 'Carub.0007s1608' => 'cru', 'Carub.0008s1068' => 'cru', 'Carub.0008s1077' => 'cru', 'Ca_16158_v3' => 'car', 'Ca_17571_v3' => 'car', 'Ca_21936_v3' => 'car', 'Ca_22350_v3' => 'car', 'CBR_g22445' => 'cbr', 'CBR_g26290' => 'cbr', 'Cc04_g09610' => 'ccan', 'Cc04_g12280' => 'ccan', 'Cc07_g10230' => 'ccan', 'CDE02G0093' => 'cde', 'CDE02G0701' => 'cde', 'CDE04G1050' => 'cde', 'CDE05G1833' => 'cde', 'CDE05G3058' => 'cde', 'CDE05G3380' => 'cde', 'CDE06G0536' => 'cde', 'Cfa006923' => 'cfa', 'Cfa009402' => 'cfa', 'Cfa018751' => 'cfa', 'Cfa019164' => 'cfa', 'Cfa022935' => 'cfa', 'Ciclev10019081m.g' => 'ccl', 'Ciclev10025076m.g' => 'ccl', 'Ciclev10030712m.g' => 'ccl', 'Ciclev10033760m.g' => 'ccl', 'CiPaw.05G105600' => 'cil', 'CiPaw.08G136700' => 'cil', 'CiPaw.11G003900' => 'cil', 'CiPaw.11G023700' => 'cil', 'CiPaw.12G003700' => 'cil', 'ClCG06G017100' => 'cla', 'ClCG06G018110' => 'cla', 'ClCG07G008800' => 'cla', 'ClCG07G015330' => 'cla', 'COL.COLO4_13698' => 'col', 'COL.COLO4_16659' => 'col', 'COL.COLO4_21986' => 'col', 'COL.COLO4_24049' => 'col', 'COL.COLO4_29061' => 'col', 'COL.COLO4_29075' => 'col', 'COL.COLO4_30094' => 'col', 'Cpa.g.c33689' => 'cpa', 'Cpa.g.sc108.39' => 'cpa', 'Cpa.g.sc108.41' => 'cpa', 'Cpa.g.sc1163.1' => 'cpa', 'Cpa.g.sc4.155' => 'cpa', 'Cpa.g.sc6.194' => 'cpa', 'CsaV3_1G000340' => 'csa', 'CsaV3_1G001400' => 'csa', 'CsaV3_4G002220' => 'csa', 'CsaV3_4G005370' => 'csa', 'CSS0007487' => 'camsi', 'CSS0008066' => 'camsi', 'CSS0009120' => 'camsi', 'CSS0015512' => 'camsi', 'CSS0022409' => 'camsi', 'CSS0025358' => 'camsi', 'CSS0044547' => 'camsi', 'DCAR_013057' => 'dca', 'DCAR_015058' => 'dca', 'DCAR_016027' => 'dca', 'DCAR_017327' => 'dca', 'DCAR_020743' => 'dca', 'DCAR_026157' => 'dca', 'DCAR_032339' => 'dca', 'DCAR_032340' => 'dca', 'Dinv11200' => 'din', 'Dinv11201' => 'din', 'Dinv20631' => 'din', 'Dinv23182' => 'din', 'Dinv33466' => 'din', 'Dinv33583' => 'din', 'Dinv38565' => 'din', 'Duzib068G0200' => 'dzi', 'Duzib147G0132' => 'dzi', 'Duzib147G0635' => 'dzi', 'Duzib205G1670' => 'dzi', 'Duzib251G0606' => 'dzi', 'ECA232G3336' => 'eca', 'ECA232G3763' => 'eca', 'ECA232G4845' => 'eca', 'ECA234G1607' => 'eca', 'ECA246G0932' => 'eca', 'ECA247G0781' => 'eca', 'ECA247G1932' => 'eca', 'ECA247G2079' => 'eca', 'ECA247G3338' => 'eca', 'ECA247G4115' => 'eca', 'EL10Ac3g06552' => 'bvu', 'EL10Ac5g10721' => 'bvu', 'EL10Ac5g10722' => 'bvu', 'EL10Ac5g10723' => 'bvu', 'EL10Ac5g11361' => 'bvu', 'EL10Ac6g13553' => 'bvu', 'EL10As8g23872' => 'bvu', 'Eucgr.B00250' => 'egr', 'Eucgr.B00251' => 'egr', 'Eucgr.B03533' => 'egr', 'Eucgr.I02381' => 'egr', 'Eucgr.K02700' => 'egr', 'FAN02G0174' => 'fan', 'FAN02G3146' => 'fan', 'FAN04G1672' => 'fan', 'FAN04G2273' => 'fan', 'FAN05G2791' => 'fan', 'FAN05G4035' => 'fan', 'FAN07G0834' => 'fan', 'FAN08G1198' => 'fan', 'FAN09G4182' => 'fan', 'FAN12G0496' => 'fan', 'FAN13G1027' => 'fan', 'FAN13G2951' => 'fan', 'FAN14G0705' => 'fan', 'FAN14G0720' => 'fan', 'FAN17G0201' => 'fan', 'FAN17G2665' => 'fan', 'FAN18G1456' => 'fan', 'FAN18G1525' => 'fan', 'FAN18G3500' => 'fan', 'FAN28G2670' => 'fan', 'FvH4_1g12391' => 'fve', 'FvH4_4g23220' => 'fve', 'FvH4_5g08810' => 'fve', 'FvH4_5g28960' => 'fve', 'FvH4_6g42820' => 'fve', 'FvH4_6g51110' => 'fve', 'Glyma.02G051802' => 'gma', 'Glyma.04G185300' => 'gma', 'Glyma.05G202900' => 'gma', 'Glyma.08G010300' => 'gma', 'Glyma.16G131900' => 'gma', 'Glyma.17G087900' => 'gma', 'Gohir.A07G048600' => 'ghi', 'Gohir.A11G179000' => 'ghi', 'Gohir.A12G140900' => 'ghi', 'Gohir.A12G140950' => 'ghi', 'Gohir.A12G191700' => 'ghi', 'Gohir.A13G086300' => 'ghi', 'Gohir.D07G052900' => 'ghi', 'Gohir.D11G186600' => 'ghi', 'Gohir.D12G145575' => 'ghi', 'Gohir.D12G145650' => 'ghi', 'Gohir.D12G145725' => 'ghi', 'Gohir.D12G194050' => 'ghi', 'Gohir.D13G091800' => 'ghi', 'Gorai.001G055900' => 'gra', 'Gorai.007G198400' => 'gra', 'Gorai.008G157000' => 'gra', 'Gorai.008G157100' => 'gra', 'Gorai.008G208700' => 'gra', 'Gorai.010G138700' => 'gra', 'GSVIVG01000977001' => 'vvi', 'GSVIVG01007708001' => 'vvi', 'GSVIVG01008587001' => 'vvi', 'GSVIVG01018849001' => 'vvi', 'GSVIVG01032432001' => 'vvi', 'HanXRQChr02g0034131' => 'han', 'HanXRQChr02g0035981' => 'han', 'HanXRQChr02g0035991' => 'han', 'HanXRQChr05g0155611' => 'han', 'HanXRQChr05g0155621' => 'han', 'HanXRQChr08g0236501' => 'han', 'HanXRQChr09g0261321' => 'han', 'HanXRQChr09g0272081' => 'han', 'HanXRQChr10g0310741' => 'han', 'HanXRQChr11g0325591' => 'han', 'HanXRQChr12g0385691' => 'han', 'HanXRQChr13g0387801' => 'han', 'HanXRQChr15g0463011' => 'han', 'Haze_03826' => 'cav', 'Haze_03827' => 'cav', 'Haze_07183' => 'cav', 'Haze_07537' => 'cav', 'Haze_07539' => 'cav', 'Haze_12461' => 'cav', 'Haze_16115' => 'cav', 'Haze_16808' => 'cav', 'Haze_18531' => 'cav', 'Hma1.2p1_0046F.1_g026700' => 'hma', 'Hma1.2p1_0046F.1_g026710' => 'hma', 'Hma1.2p1_0168F.1_g074340' => 'hma', 'Hma1.2p1_0266F.1_g107030' => 'hma', 'Hma1.2p1_0266F.1_g107060' => 'hma', 'Hma1.2p1_0275F.1_g110510' => 'hma', 'Hma1.2p1_0592F.1_g185490' => 'hma', 'Hma1.2p1_0592F.1_g185500' => 'hma', 'Hma1.2p1_0592F.1_g185510' => 'hma', 'Hma1.2p1_0592F.1_g185520' => 'hma', 'Hma1.2p1_0592F.1_g185530' => 'hma', 'Hma1.2p1_0818F.1_g223450' => 'hma', 'HPP92_009708' => 'vpl', 'HPP92_009793' => 'vpl', 'HPP92_009796' => 'vpl', 'HPP92_009797' => 'vpl', 'HPP92_014940' => 'vpl', 'HPP92_014988' => 'vpl', 'Hund02463' => 'sun', 'Hund02760' => 'sun', 'Hund05071' => 'sun', 'Hund10108' => 'sun', 'Hund11204' => 'sun', 'Hund14016' => 'sun', 'Hund16464' => 'sun', 'Lalb_Chr09g0333391' => 'lal', 'Lalb_Chr11g0070461' => 'lal', 'Lalb_Chr12g0201671' => 'lal', 'Lalb_Chr13g0297161' => 'lal', 'Lj1g0002823' => 'lja', 'Lj3C1074T6' => 'lonja', 'Lj4A212T28' => 'lonja', 'Lj4g0005516' => 'lja', 'Lj4g0013705' => 'lja', 'Lj4g0027865' => 'lja', 'Lj5C92G16' => 'lonja', 'Lj5C92T12' => 'lonja', 'Lj7C596T3' => 'lonja', 'Lj9A446G59' => 'lonja', 'Lj9A482G21' => 'lonja', 'Lsat_1_v5_gn_1_28261' => 'lsa', 'Lsat_1_v5_gn_1_28281' => 'lsa', 'Lsat_1_v5_gn_1_32721' => 'lsa', 'Lsat_1_v5_gn_4_151760' => 'lsa', 'Lsat_1_v5_gn_4_2120' => 'lsa', 'Lsat_1_v5_gn_4_75761' => 'lsa', 'Lsat_1_v5_gn_5_10920' => 'lsa', 'Manes.02G099900' => 'mes', 'Manes.11G096200' => 'mes', 'Manes.12G007200' => 'mes', 'Manes.14G048300' => 'mes', 'Manes.17G114700' => 'mes', 'Mapoly0002s0070' => 'mpo', 'Mapoly0029s0099' => 'mpo', 'MBI07_g24742_MAGBIO' => 'mbi', 'MBI10_g27988_MAGBIO' => 'mbi', 'MBI11_g13057_MAGBIO' => 'mbi', 'MD02G1137200' => 'mdo', 'MD06G1137200' => 'mdo', 'MD07G1122300' => 'mdo', 'MD09G1078200' => 'mdo', 'MD13G1123700' => 'mdo', 'MD14G1151900' => 'mdo', 'MD17G1030900' => 'mdo', 'MD17G1068200' => 'mdo', 'MD17G1068600' => 'mdo', 'Medtr3g077540' => 'mtr', 'Medtr4g105530' => 'mtr', 'Medtr8g076580' => 'mtr', 'Medtr8g076590' => 'mtr', 'Medtr8g096410' => 'mtr', 'MELO3C016411.2' => 'cme', 'MELO3C017780.2' => 'cme', 'MELO3C022560.2' => 'cme', 'MELO3C026187.2' => 'cme', 'MELO3C026286.2' => 'cme', 'MELO3C032854.2' => 'cme', 'Migut.H02495' => 'egut', 'Migut.I00561' => 'egut', 'Migut.K01015' => 'egut', 'Migut.K01016' => 'egut', 'Migut.L00743' => 'egut', 'Migut.L00744' => 'egut', 'Migut.L00746' => 'egut', 'Migut.L00798' => 'egut', 'Migut.L00799' => 'egut', 'Migut.N02096' => 'egut', 'MSTRG.11259' => 'ama', 'MSTRG.23142' => 'ama', 'MSTRG.2499' => 'ama', 'Nitab4.5_0000003g0730' => 'nta', 'Nitab4.5_0000137g0020' => 'nta', 'Nitab4.5_0000721g0210' => 'nta', 'Nitab4.5_0000723g0050' => 'nta', 'Nitab4.5_0000913g0070' => 'nta', 'Nitab4.5_0001332g0040' => 'nta', 'Nitab4.5_0001771g0050' => 'nta', 'Nitab4.5_0001918g0050' => 'nta', 'Nitab4.5_0002686g0030' => 'nta', 'Nitab4.5_0003156g0020' => 'nta', 'Nitab4.5_0003383g0040' => 'nta', 'Nitab4.5_0003918g0010' => 'nta', 'Nitab4.5_0006760g0010' => 'nta', 'Nn1g05981' => 'nnu', 'Nn1g06288' => 'nnu', 'Nn3g16371' => 'nnu', 'Nn3g16786' => 'nnu', 'Nn4g22232' => 'nnu', 'Oeu005144.1' => 'oeu', 'Oeu005145.1' => 'oeu', 'Oeu011348.1' => 'oeu', 'Oeu016415.1' => 'oeu', 'Oeu023501.1' => 'oeu', 'Oeu044473.1' => 'oeu', 'Oeu048892.2' => 'oeu', 'Os01g0549200' => 'osa', 'Os02g0469300' => 'osa', 'Os04g0311100' => 'osa', 'Os06g0474900' => 'osa', 'Os10g0181700' => 'osa', 'Os11g0454800' => 'osa', 'Peaxi162Scf00037g00714' => 'pax', 'Peaxi162Scf00084g01217' => 'pax', 'Peaxi162Scf00257g00217' => 'pax', 'Peaxi162Scf00516g00215' => 'pax', 'Peaxi162Scf00689g00123' => 'pax', 'PGR044G2719' => 'pgr', 'PGR083G1360' => 'pgr', 'PGR102G2849' => 'pgr', 'PGR119G2534' => 'pgr', 'PGSC0003DMG400003538' => 'stu', 'PGSC0003DMG400028138' => 'stu', 'PGSC0003DMG400031732' => 'stu', 'PGSC0003DMG400038165' => 'stu', 'Phvul.002G284600' => 'pvu', 'Phvul.003G258200' => 'pvu', 'Phvul.009G176500' => 'pvu', 'Potri.003G167201' => 'ptr', 'Potri.005G118400' => 'ptr', 'Potri.012G089000' => 'ptr', 'Potri.012G102800' => 'ptr', 'Potri.015G079400' => 'ptr', 'Potri.015G100900' => 'ptr', 'Pp3c14_9810' => 'ppa', 'Pp3c15_10450' => 'ppa', 'Pp3c20_19150' => 'ppa', 'Pp3c23_12740' => 'ppa', 'Pp3c23_6310' => 'ppa', 'Pp3c24_3720' => 'ppa', 'Pp3c27_2580' => 'ppa', 'Pp3c9_8990' => 'ppa', 'PRCOL_00002854' => 'pco', 'Prupe.1G221200' => 'ppe', 'Prupe.3G289000' => 'ppe', 'Prupe.5G147000' => 'ppe', 'Prupe.6G157300' => 'ppe', 'Prupe.7G163400' => 'ppe', 'Psat0s2177g0040' => 'psa', 'Psat3g174760' => 'psa', 'Psat3g192160' => 'psa', 'Psat4g058520' => 'psa', 'Psat4g096840' => 'psa', 'Psat7g037320' => 'psa', 'PSO017G1274' => 'pso', 'PSO017G5166' => 'pso', 'PSO063G4558' => 'pso', 'PSO170G4458' => 'pso', 'PSO170G5005' => 'pso', 'PSO210G6156' => 'pso', 'PSO210G6635' => 'pso', 'PSO210G7397' => 'pso', 'PSO210G7700' => 'pso', 'PSO455G0035' => 'pso', 'PSO455G0180' => 'pso', 'PSO478G4515' => 'pso', 'PSO832G1305' => 'pso', 'PSO832G3489' => 'pso', 'QL02p075247' => 'qlo', 'QL03p051148' => 'qlo', 'QL05p010313' => 'qlo', 'QL06p034627' => 'qlo', 'QL10p001889' => 'qlo', 'QL10p010846' => 'qlo', 'RcHm_v2.0_Chr1g0350621' => 'rch', 'RcHm_v2.0_Chr1g0350641' => 'rch', 'RcHm_v2.0_Chr2g0092891' => 'rch', 'RcHm_v2.0_Chr2g0100251' => 'rch', 'RcHm_v2.0_Chr2g0158661' => 'rch', 'RcHm_v2.0_Chr2g0172741' => 'rch', 'RcHm_v2.0_Chr4g0429571' => 'rch', 'RcHm_v2.0_Chr5g0042471' => 'rch', 'RcHm_v2.0_Chr7g0189451' => 'rch', 'Rhsim08G0052000' => 'rsi', 'Rhsim08G0174400' => 'rsi', 'Rhsim08G0193200' => 'rsi', 'Rhsim10G0214800' => 'rsi', 'Rhsim10G0214900' => 'rsi', 'Rhsim10G0215000' => 'rsi', 'Rhsim12G0022900' => 'rsi', 'Rhsim12G0177500' => 'rsi', 'Rhsim12G0177700' => 'rsi', 'Sabra03G0122600' => 'sbr', 'Sabra05G0097400' => 'sbr', 'Sabra12G0064100' => 'sbr', 'Sabra15G0121300' => 'sbr', 'SalBow2G0642' => 'sbo', 'SalBow5G2667' => 'sbo', 'SalBow5G4873' => 'sbo', 'SalBow8G2395' => 'sbo', 'Sc03g0003290' => 'sci', 'Sc10g0010130' => 'sci', 'Sc22g0003650' => 'sci', 'Sed0001603' => 'sed', 'Sed0004259' => 'sed', 'Sed0006789' => 'sed', 'Sed0011838' => 'sed', 'Sed0012964' => 'sed', 'Sed0016383' => 'sed', 'Sed0019010' => 'sed', 'Sed0020188' => 'sed', 'SEGI_04702' => 'sgi', 'SEGI_17231' => 'sgi', 'SEGI_18877' => 'sgi', 'SEGI_25196' => 'sgi', 'SEGI_25515' => 'sgi', 'SEGI_28445' => 'sgi', 'SEGI_37452' => 'sgi', 'SGA_v2.0_scaffold188G40336' => 'sas', 'SGA_v2.0_scaffold228G43247' => 'sas', 'SGA_v2.0_scaffold280G46853' => 'sas', 'SGA_v2.0_scaffold34G13808' => 'sas', 'SGA_v2.0_scaffold40G15576' => 'sas', 'SGA_v2.0_scaffold611G53188' => 'sas', 'SGA_v2.0_scaffold78G25461' => 'sas', 'SGA_v2.0_scaffold90G27888' => 'sas', 'SHI08601' => 'shi', 'SHI08606' => 'shi', 'SHI17117' => 'shi', 'SHI17119' => 'shi', 'SMO118G0201' => 'smo', 'SMO169G0247' => 'smo', 'SMO176G0006' => 'smo', 'SMO176G0015' => 'smo', 'SMO202G0006' => 'smo', 'SMO240G0050' => 'smo', 'SMO286G0009' => 'smo', 'SMO338G0033' => 'smo', 'SMO356G0533' => 'smo', 'SMO364G0382' => 'smo', 'SMO367G0166' => 'smo', 'SMO367G1098' => 'smo', 'Solyc01g009920.3' => 'sly', 'Solyc01g099300.3' => 'sly', 'Solyc02g084700.3' => 'sly', 'Solyc03g097520.3' => 'sly', 'Solyc06g071580.3' => 'sly', 'Solyc10g081760.3' => 'sly', 'Sopen01g005480' => 'spe', 'Sopen01g042850' => 'spe', 'Sopen02g029370' => 'spe', 'Sopen03g028280' => 'spe', 'Sopen06g027870' => 'spe', 'Sopen10g032270' => 'spe', 'Sp5g18180' => 'spa', 'Sp6g12880' => 'spa', 'Sp6g30850' => 'spa', 'Sp7g22960' => 'spa', 'Sp7g34010' => 'spa', 'SpUn1326_0010' => 'spa', 'TAR371G0242' => 'tar', 'TAR622G0638' => 'tar', 'TAR628G1548' => 'tar', 'TAR629G1079' => 'tar', 'TAR629G3413' => 'tar', 'THA.LOC104804249' => 'tha', 'THA.LOC104808315' => 'tha', 'THA.LOC104809238' => 'tha', 'THA.LOC104825484' => 'tha', 'Thecc.01G025500' => 'tca', 'Thecc.03G015800' => 'tca', 'Thecc.03G018000' => 'tca', 'Thecc.03G134800' => 'tca', 'Thecc.04G014700' => 'tca', 'Thhalv10006991m.g' => 'esa', 'Thhalv10012707m.g' => 'esa', 'Thhalv10015739m.g' => 'esa', 'Thhalv10024553m.g' => 'esa', 'Thhalv10024673m.g' => 'esa', 'Thhalv10029187m.g' => 'esa', 'TPR.G12971' => 'tpr', 'TPR.G29396' => 'tpr', 'TPR.G33376' => 'tpr', 'TPR.G35508' => 'tpr', 'TPR.G35516' => 'tpr', 'TPR.G37317' => 'tpr', 'TPR.G37389' => 'tpr', 'TPR.G37523' => 'tpr', 'TPR.G559' => 'tpr', 'TWI14G0070' => 'twi', 'TWI14G0729' => 'twi', 'TWI18G0596' => 'twi', 'TWI39G0780' => 'twi', 'TWI39G0850' => 'twi', 'TWI73G1052' => 'twi', 'unitig_52.g17485' => 'ugi', 'unitig_61.g26355' => 'ugi', 'vmacro01040' => 'vma', 'vmacro16731' => 'vma', 'vmacro18270' => 'vma', 'vmacro19142' => 'vma', 'vmacro19407' => 'vma', 'vmacro19408' => 'vma', 'vmacro21899' => 'vma', 'vmacro21900' => 'vma', 'vmacro21901' => 'vma', 'VMungo0251G0490' => 'vmu', 'VMungo0251G1748' => 'vmu', 'VMungo1309G0421' => 'vmu', 'Zm00001eb086500' => 'zma', 'Zm00001eb150680' => 'zma', 'Zm00001eb162330' => 'zma', 'Zm00001eb203130' => 'zma', 'Zm00001eb369480' => 'zma', 'Zm00001eb382340' => 'zma', 'Zm00001eb416360' => 'zma' ), 'gf_id' => 'HOM05D000902', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000902' ), 'data_identifier' => 'HOM05D000902', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000902', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '663', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02470' => 'bna', 'A01p16260' => 'bna', 'A02p01680' => 'bna', 'A03p16600' => 'bna', 'A03p55660' => 'bna', 'A03p64160' => 'bna', 'A03p64170' => 'bna', 'A08p31900' => 'bna', 'A09p59530' => 'bna', 'A10p08230' => 'bna', 'A10p25090' => 'bna', 'Aa31LG3G7100' => 'aar', 'Aa31LG3G7110' => 'aar', 'Aa31LG6G13160' => 'aar', 'Aa31LG7G10770' => 'aar', 'Aa31LG7G3830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2723' => 'aag', 'Actinidia08045' => 'ach', 'Actinidia08888' => 'ach', 'Actinidia18333' => 'ach', 'Actinidia19334' => 'ach', 'Actinidia25552' => 'ach', 'Actinidia26089' => 'ach', 'Actinidia30615' => 'ach', 'Actinidia30616' => 'ach', 'Actinidia33083' => 'ach', 'Actinidia35762' => 'ach', 'Ah.02g110620' => 'amhyb', 'Ah.11g046390' => 'amhyb', 'AL1G31670' => 'aly', 'AL6G23730' => 'aly', 'AL7G14740' => 'aly', 'AL7G14750' => 'aly', 'AL7G14760' => 'aly', 'AL7G28220' => 'aly', 'AL8G24940' => 'aly', 'Aqoxy3G01665' => 'aox', 'Aqoxy3G02853' => 'aox', 'Aqoxy5G01513' => 'aox', 'Aqoxy5G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8SKA4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ75LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKDA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0LJZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7REX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZP4YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWX7I5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2QKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS0L9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPCD8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q161UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC7XCF' => 'arhy', 'AT1G19100' => 'ath', 'AT4G24970' => 'ath', 'AT4G36270' => 'ath', 'AT4G36280' => 'ath', 'AT4G36290' => 'ath', 'AT5G13130' => 'ath', 'AT5G50780' => 'ath', 'ATR0582G266' => 'atr', 'ATR0661G195' => 'atr', 'ATR1152G031' => 'atr', 'Atru.chr11.2382' => 'acertr', 'Atru.chr12.2337' => 'acertr', 'Atru.chr3.744' => 'acertr', 'Atru.chr6.1870' => 'acertr', 'Atru.chr9.2515' => 'acertr', 'AUR62004120' => 'cqu', 'AUR62005667' => 'cqu', 'AUR62007634' => 'cqu', 'AUR62008186' => 'cqu', 'AUR62008187' => 'cqu', 'AUR62008188' => 'cqu', 'AUR62027954' => 'cqu', 'AUR62028766' => 'cqu', 'AUR62028767' => 'cqu', 'AUR62028768' => 'cqu', 'AUR62028886' => 'cqu', 'AUR62029563' => 'cqu', 'AUR62038832' => 'cqu', 'BcaB01g04149' => 'bca', 'BcaB03g12940' => 'bca', 'BcaB03g13090' => 'bca', 'BcaB03g14466' => 'bca', 'BcaB05g24035' => 'bca', 'BcaC01g06050' => 'bca', 'BcaC04g19148' => 'bca', 'BcaC04g20761' => 'bca', 'BcaC06g32845' => 'bca', 'BcaC07g41274' => 'bca', 'BcaC09g50827' => 'bca', 'BcaNung00741' => 'bca', 'BcaNung00742' => 'bca', 'BcaNung01859' => 'bca', 'BcaNung03985' => 'bca', 'BcaNung03989' => 'bca', 'BcaNung05661' => 'bca', 'BolC1t00257H' => 'bol', 'BolC1t01956H' => 'bol', 'BolC2t06534H' => 'bol', 'BolC3t14334H' => 'bol', 'BolC5t30451H' => 'bol', 'BolC7t45880H' => 'bol', 'BolC7t46586H' => 'bol', 'BolC8t49301H' => 'bol', 'BolC8t51837H' => 'bol', 'BolC9t56822H' => 'bol', 'BolC9t59235H' => 'bol', 'BraA01t00234Z' => 'bra', 'BraA01t01563Z' => 'bra', 'BraA02t05147Z' => 'bra', 'BraA03t10947Z' => 'bra', 'BraA03t14633Z' => 'bra', 'BraA08t35112Z' => 'bra', 'BraA09t41330Z' => 'bra', 'BraA10t44570Z' => 'bra', 'C01p02670' => 'bna', 'C01p20260' => 'bna', 'C02p05890' => 'bna', 'C03p19530' => 'bna', 'C05p17470' => 'bna', 'C07p53900' => 'bna', 'C07p61630' => 'bna', 'C08p16800' => 'bna', 'C08p42810' => 'bna', 'C09p39480' => 'bna', 'C09p63980' => 'bna', 'CAN.G1001.7' => 'can', 'CAN.G1034.55' => 'can', 'CAN.G143.7' => 'can', 'CAN.G3340.1' => 'can', 'CAN.G358.19' => 'can', 'CAN.G373.2' => 'can', 'CAN.G674.16' => 'can', 'CAN.G674.17' => 'can', 'CAN.G674.18' => 'can', 'CAN.G732.2' => 'can', 'CAN.G732.3' => 'can', 'CAN.G993.39' => 'can', 'CANSAT01G2052' => 'cansat', 'CANSAT80G0070' => 'cansat', 'CANSAT80G0483' => 'cansat', 'CANSAT80G0625' => 'cansat', 'CARHR019690' => 'chi', 'CARHR080280' => 'chi', 'CARHR152750' => 'chi', 'CARHR152760' => 'chi', 'CARHR152770' => 'chi', 'CARHR200340' => 'chi', 'CARHR232370' => 'chi', 'CARHR244670' => 'chi', 'CARHR244680' => 'chi', 'CARHR257520' => 'chi', 'Carub.0001s1872' => 'cru', 'Carub.0006s1130' => 'cru', 'Carub.0007s0396' => 'cru', 'Carub.0007s0397' => 'cru', 'Carub.0007s1608' => 'cru', 'Carub.0008s1068' => 'cru', 'Carub.0008s1077' => 'cru', 'Ca_16158_v3' => 'car', 'Ca_17571_v3' => 'car', 'Ca_21936_v3' => 'car', 'Ca_22350_v3' => 'car', 'CBR_g22445' => 'cbr', 'CBR_g26290' => 'cbr', 'Cc04_g09610' => 'ccan', 'Cc04_g12280' => 'ccan', 'Cc07_g10230' => 'ccan', 'CDE02G0093' => 'cde', 'CDE02G0701' => 'cde', 'CDE04G1050' => 'cde', 'CDE05G1833' => 'cde', 'CDE05G3058' => 'cde', 'CDE05G3380' => 'cde', 'CDE06G0536' => 'cde', 'Cfa006923' => 'cfa', 'Cfa009402' => 'cfa', 'Cfa018751' => 'cfa', 'Cfa019164' => 'cfa', 'Cfa022935' => 'cfa', 'Ciclev10019081m.g' => 'ccl', 'Ciclev10025076m.g' => 'ccl', 'Ciclev10030712m.g' => 'ccl', 'Ciclev10033760m.g' => 'ccl', 'CiPaw.05G105600' => 'cil', 'CiPaw.08G136700' => 'cil', 'CiPaw.11G003900' => 'cil', 'CiPaw.11G023700' => 'cil', 'CiPaw.12G003700' => 'cil', 'ClCG06G017100' => 'cla', 'ClCG06G018110' => 'cla', 'ClCG07G008800' => 'cla', 'ClCG07G015330' => 'cla', 'COL.COLO4_13698' => 'col', 'COL.COLO4_16659' => 'col', 'COL.COLO4_21986' => 'col', 'COL.COLO4_24049' => 'col', 'COL.COLO4_29061' => 'col', 'COL.COLO4_29075' => 'col', 'COL.COLO4_30094' => 'col', 'Cpa.g.c33689' => 'cpa', 'Cpa.g.sc108.39' => 'cpa', 'Cpa.g.sc108.41' => 'cpa', 'Cpa.g.sc1163.1' => 'cpa', 'Cpa.g.sc4.155' => 'cpa', 'Cpa.g.sc6.194' => 'cpa', 'CsaV3_1G000340' => 'csa', 'CsaV3_1G001400' => 'csa', 'CsaV3_4G002220' => 'csa', 'CsaV3_4G005370' => 'csa', 'CSS0007487' => 'camsi', 'CSS0008066' => 'camsi', 'CSS0009120' => 'camsi', 'CSS0015512' => 'camsi', 'CSS0022409' => 'camsi', 'CSS0025358' => 'camsi', 'CSS0044547' => 'camsi', 'DCAR_013057' => 'dca', 'DCAR_015058' => 'dca', 'DCAR_016027' => 'dca', 'DCAR_017327' => 'dca', 'DCAR_020743' => 'dca', 'DCAR_026157' => 'dca', 'DCAR_032339' => 'dca', 'DCAR_032340' => 'dca', 'Dinv11200' => 'din', 'Dinv11201' => 'din', 'Dinv20631' => 'din', 'Dinv23182' => 'din', 'Dinv33466' => 'din', 'Dinv33583' => 'din', 'Dinv38565' => 'din', 'Duzib068G0200' => 'dzi', 'Duzib147G0132' => 'dzi', 'Duzib147G0635' => 'dzi', 'Duzib205G1670' => 'dzi', 'Duzib251G0606' => 'dzi', 'ECA232G3336' => 'eca', 'ECA232G3763' => 'eca', 'ECA232G4845' => 'eca', 'ECA234G1607' => 'eca', 'ECA246G0932' => 'eca', 'ECA247G0781' => 'eca', 'ECA247G1932' => 'eca', 'ECA247G2079' => 'eca', 'ECA247G3338' => 'eca', 'ECA247G4115' => 'eca', 'EL10Ac3g06552' => 'bvu', 'EL10Ac5g10721' => 'bvu', 'EL10Ac5g10722' => 'bvu', 'EL10Ac5g10723' => 'bvu', 'EL10Ac5g11361' => 'bvu', 'EL10Ac6g13553' => 'bvu', 'EL10As8g23872' => 'bvu', 'Eucgr.B00250' => 'egr', 'Eucgr.B00251' => 'egr', 'Eucgr.B03533' => 'egr', 'Eucgr.I02381' => 'egr', 'Eucgr.K02700' => 'egr', 'FAN02G0174' => 'fan', 'FAN02G3146' => 'fan', 'FAN04G1672' => 'fan', 'FAN04G2273' => 'fan', 'FAN05G2791' => 'fan', 'FAN05G4035' => 'fan', 'FAN07G0834' => 'fan', 'FAN08G1198' => 'fan', 'FAN09G4182' => 'fan', 'FAN12G0496' => 'fan', 'FAN13G1027' => 'fan', 'FAN13G2951' => 'fan', 'FAN14G0705' => 'fan', 'FAN14G0720' => 'fan', 'FAN17G0201' => 'fan', 'FAN17G2665' => 'fan', 'FAN18G1456' => 'fan', 'FAN18G1525' => 'fan', 'FAN18G3500' => 'fan', 'FAN28G2670' => 'fan', 'FvH4_1g12391' => 'fve', 'FvH4_4g23220' => 'fve', 'FvH4_5g08810' => 'fve', 'FvH4_5g28960' => 'fve', 'FvH4_6g42820' => 'fve', 'FvH4_6g51110' => 'fve', 'Glyma.02G051802' => 'gma', 'Glyma.04G185300' => 'gma', 'Glyma.05G202900' => 'gma', 'Glyma.08G010300' => 'gma', 'Glyma.16G131900' => 'gma', 'Glyma.17G087900' => 'gma', 'Gohir.A07G048600' => 'ghi', 'Gohir.A11G179000' => 'ghi', 'Gohir.A12G140900' => 'ghi', 'Gohir.A12G140950' => 'ghi', 'Gohir.A12G191700' => 'ghi', 'Gohir.A13G086300' => 'ghi', 'Gohir.D07G052900' => 'ghi', 'Gohir.D11G186600' => 'ghi', 'Gohir.D12G145575' => 'ghi', 'Gohir.D12G145650' => 'ghi', 'Gohir.D12G145725' => 'ghi', 'Gohir.D12G194050' => 'ghi', 'Gohir.D13G091800' => 'ghi', 'Gorai.001G055900' => 'gra', 'Gorai.007G198400' => 'gra', 'Gorai.008G157000' => 'gra', 'Gorai.008G157100' => 'gra', 'Gorai.008G208700' => 'gra', 'Gorai.010G138700' => 'gra', 'GSVIVG01000977001' => 'vvi', 'GSVIVG01007708001' => 'vvi', 'GSVIVG01008587001' => 'vvi', 'GSVIVG01018849001' => 'vvi', 'GSVIVG01032432001' => 'vvi', 'HanXRQChr02g0034131' => 'han', 'HanXRQChr02g0035981' => 'han', 'HanXRQChr02g0035991' => 'han', 'HanXRQChr05g0155611' => 'han', 'HanXRQChr05g0155621' => 'han', 'HanXRQChr08g0236501' => 'han', 'HanXRQChr09g0261321' => 'han', 'HanXRQChr09g0272081' => 'han', 'HanXRQChr10g0310741' => 'han', 'HanXRQChr11g0325591' => 'han', 'HanXRQChr12g0385691' => 'han', 'HanXRQChr13g0387801' => 'han', 'HanXRQChr15g0463011' => 'han', 'Haze_03826' => 'cav', 'Haze_03827' => 'cav', 'Haze_07183' => 'cav', 'Haze_07537' => 'cav', 'Haze_07539' => 'cav', 'Haze_12461' => 'cav', 'Haze_16115' => 'cav', 'Haze_16808' => 'cav', 'Haze_18531' => 'cav', 'Hma1.2p1_0046F.1_g026700' => 'hma', 'Hma1.2p1_0046F.1_g026710' => 'hma', 'Hma1.2p1_0168F.1_g074340' => 'hma', 'Hma1.2p1_0266F.1_g107030' => 'hma', 'Hma1.2p1_0266F.1_g107060' => 'hma', 'Hma1.2p1_0275F.1_g110510' => 'hma', 'Hma1.2p1_0592F.1_g185490' => 'hma', 'Hma1.2p1_0592F.1_g185500' => 'hma', 'Hma1.2p1_0592F.1_g185510' => 'hma', 'Hma1.2p1_0592F.1_g185520' => 'hma', 'Hma1.2p1_0592F.1_g185530' => 'hma', 'Hma1.2p1_0818F.1_g223450' => 'hma', 'HPP92_009708' => 'vpl', 'HPP92_009793' => 'vpl', 'HPP92_009796' => 'vpl', 'HPP92_009797' => 'vpl', 'HPP92_014940' => 'vpl', 'HPP92_014988' => 'vpl', 'Hund02463' => 'sun', 'Hund02760' => 'sun', 'Hund05071' => 'sun', 'Hund10108' => 'sun', 'Hund11204' => 'sun', 'Hund14016' => 'sun', 'Hund16464' => 'sun', 'Lalb_Chr09g0333391' => 'lal', 'Lalb_Chr11g0070461' => 'lal', 'Lalb_Chr12g0201671' => 'lal', 'Lalb_Chr13g0297161' => 'lal', 'Lj1g0002823' => 'lja', 'Lj3C1074T6' => 'lonja', 'Lj4A212T28' => 'lonja', 'Lj4g0005516' => 'lja', 'Lj4g0013705' => 'lja', 'Lj4g0027865' => 'lja', 'Lj5C92G16' => 'lonja', 'Lj5C92T12' => 'lonja', 'Lj7C596T3' => 'lonja', 'Lj9A446G59' => 'lonja', 'Lj9A482G21' => 'lonja', 'Lsat_1_v5_gn_1_28261' => 'lsa', 'Lsat_1_v5_gn_1_28281' => 'lsa', 'Lsat_1_v5_gn_1_32721' => 'lsa', 'Lsat_1_v5_gn_4_151760' => 'lsa', 'Lsat_1_v5_gn_4_2120' => 'lsa', 'Lsat_1_v5_gn_4_75761' => 'lsa', 'Lsat_1_v5_gn_5_10920' => 'lsa', 'Manes.02G099900' => 'mes', 'Manes.11G096200' => 'mes', 'Manes.12G007200' => 'mes', 'Manes.14G048300' => 'mes', 'Manes.17G114700' => 'mes', 'Mapoly0002s0070' => 'mpo', 'Mapoly0029s0099' => 'mpo', 'MBI07_g24742_MAGBIO' => 'mbi', 'MBI10_g27988_MAGBIO' => 'mbi', 'MBI11_g13057_MAGBIO' => 'mbi', 'MD02G1137200' => 'mdo', 'MD06G1137200' => 'mdo', 'MD07G1122300' => 'mdo', 'MD09G1078200' => 'mdo', 'MD13G1123700' => 'mdo', 'MD14G1151900' => 'mdo', 'MD17G1030900' => 'mdo', 'MD17G1068200' => 'mdo', 'MD17G1068600' => 'mdo', 'Medtr3g077540' => 'mtr', 'Medtr4g105530' => 'mtr', 'Medtr8g076580' => 'mtr', 'Medtr8g076590' => 'mtr', 'Medtr8g096410' => 'mtr', 'MELO3C016411.2' => 'cme', 'MELO3C017780.2' => 'cme', 'MELO3C022560.2' => 'cme', 'MELO3C026187.2' => 'cme', 'MELO3C026286.2' => 'cme', 'MELO3C032854.2' => 'cme', 'Migut.H02495' => 'egut', 'Migut.I00561' => 'egut', 'Migut.K01015' => 'egut', 'Migut.K01016' => 'egut', 'Migut.L00743' => 'egut', 'Migut.L00744' => 'egut', 'Migut.L00746' => 'egut', 'Migut.L00798' => 'egut', 'Migut.L00799' => 'egut', 'Migut.N02096' => 'egut', 'MSTRG.11259' => 'ama', 'MSTRG.23142' => 'ama', 'MSTRG.2499' => 'ama', 'Nitab4.5_0000003g0730' => 'nta', 'Nitab4.5_0000137g0020' => 'nta', 'Nitab4.5_0000721g0210' => 'nta', 'Nitab4.5_0000723g0050' => 'nta', 'Nitab4.5_0000913g0070' => 'nta', 'Nitab4.5_0001332g0040' => 'nta', 'Nitab4.5_0001771g0050' => 'nta', 'Nitab4.5_0001918g0050' => 'nta', 'Nitab4.5_0002686g0030' => 'nta', 'Nitab4.5_0003156g0020' => 'nta', 'Nitab4.5_0003383g0040' => 'nta', 'Nitab4.5_0003918g0010' => 'nta', 'Nitab4.5_0006760g0010' => 'nta', 'Nn1g05981' => 'nnu', 'Nn1g06288' => 'nnu', 'Nn3g16371' => 'nnu', 'Nn3g16786' => 'nnu', 'Nn4g22232' => 'nnu', 'Oeu005144.1' => 'oeu', 'Oeu005145.1' => 'oeu', 'Oeu011348.1' => 'oeu', 'Oeu016415.1' => 'oeu', 'Oeu023501.1' => 'oeu', 'Oeu044473.1' => 'oeu', 'Oeu048892.2' => 'oeu', 'Os01g0549200' => 'osa', 'Os02g0469300' => 'osa', 'Os04g0311100' => 'osa', 'Os06g0474900' => 'osa', 'Os10g0181700' => 'osa', 'Os11g0454800' => 'osa', 'Peaxi162Scf00037g00714' => 'pax', 'Peaxi162Scf00084g01217' => 'pax', 'Peaxi162Scf00257g00217' => 'pax', 'Peaxi162Scf00516g00215' => 'pax', 'Peaxi162Scf00689g00123' => 'pax', 'PGR044G2719' => 'pgr', 'PGR083G1360' => 'pgr', 'PGR102G2849' => 'pgr', 'PGR119G2534' => 'pgr', 'PGSC0003DMG400003538' => 'stu', 'PGSC0003DMG400028138' => 'stu', 'PGSC0003DMG400031732' => 'stu', 'PGSC0003DMG400038165' => 'stu', 'Phvul.002G284600' => 'pvu', 'Phvul.003G258200' => 'pvu', 'Phvul.009G176500' => 'pvu', 'Potri.003G167201' => 'ptr', 'Potri.005G118400' => 'ptr', 'Potri.012G089000' => 'ptr', 'Potri.012G102800' => 'ptr', 'Potri.015G079400' => 'ptr', 'Potri.015G100900' => 'ptr', 'Pp3c14_9810' => 'ppa', 'Pp3c15_10450' => 'ppa', 'Pp3c20_19150' => 'ppa', 'Pp3c23_12740' => 'ppa', 'Pp3c23_6310' => 'ppa', 'Pp3c24_3720' => 'ppa', 'Pp3c27_2580' => 'ppa', 'Pp3c9_8990' => 'ppa', 'PRCOL_00002854' => 'pco', 'Prupe.1G221200' => 'ppe', 'Prupe.3G289000' => 'ppe', 'Prupe.5G147000' => 'ppe', 'Prupe.6G157300' => 'ppe', 'Prupe.7G163400' => 'ppe', 'Psat0s2177g0040' => 'psa', 'Psat3g174760' => 'psa', 'Psat3g192160' => 'psa', 'Psat4g058520' => 'psa', 'Psat4g096840' => 'psa', 'Psat7g037320' => 'psa', 'PSO017G1274' => 'pso', 'PSO017G5166' => 'pso', 'PSO063G4558' => 'pso', 'PSO170G4458' => 'pso', 'PSO170G5005' => 'pso', 'PSO210G6156' => 'pso', 'PSO210G6635' => 'pso', 'PSO210G7397' => 'pso', 'PSO210G7700' => 'pso', 'PSO455G0035' => 'pso', 'PSO455G0180' => 'pso', 'PSO478G4515' => 'pso', 'PSO832G1305' => 'pso', 'PSO832G3489' => 'pso', 'QL02p075247' => 'qlo', 'QL03p051148' => 'qlo', 'QL05p010313' => 'qlo', 'QL06p034627' => 'qlo', 'QL10p001889' => 'qlo', 'QL10p010846' => 'qlo', 'RcHm_v2.0_Chr1g0350621' => 'rch', 'RcHm_v2.0_Chr1g0350641' => 'rch', 'RcHm_v2.0_Chr2g0092891' => 'rch', 'RcHm_v2.0_Chr2g0100251' => 'rch', 'RcHm_v2.0_Chr2g0158661' => 'rch', 'RcHm_v2.0_Chr2g0172741' => 'rch', 'RcHm_v2.0_Chr4g0429571' => 'rch', 'RcHm_v2.0_Chr5g0042471' => 'rch', 'RcHm_v2.0_Chr7g0189451' => 'rch', 'Rhsim08G0052000' => 'rsi', 'Rhsim08G0174400' => 'rsi', 'Rhsim08G0193200' => 'rsi', 'Rhsim10G0214800' => 'rsi', 'Rhsim10G0214900' => 'rsi', 'Rhsim10G0215000' => 'rsi', 'Rhsim12G0022900' => 'rsi', 'Rhsim12G0177500' => 'rsi', 'Rhsim12G0177700' => 'rsi', 'Sabra03G0122600' => 'sbr', 'Sabra05G0097400' => 'sbr', 'Sabra12G0064100' => 'sbr', 'Sabra15G0121300' => 'sbr', 'SalBow2G0642' => 'sbo', 'SalBow5G2667' => 'sbo', 'SalBow5G4873' => 'sbo', 'SalBow8G2395' => 'sbo', 'Sc03g0003290' => 'sci', 'Sc10g0010130' => 'sci', 'Sc22g0003650' => 'sci', 'Sed0001603' => 'sed', 'Sed0004259' => 'sed', 'Sed0006789' => 'sed', 'Sed0011838' => 'sed', 'Sed0012964' => 'sed', 'Sed0016383' => 'sed', 'Sed0019010' => 'sed', 'Sed0020188' => 'sed', 'SEGI_04702' => 'sgi', 'SEGI_17231' => 'sgi', 'SEGI_18877' => 'sgi', 'SEGI_25196' => 'sgi', 'SEGI_25515' => 'sgi', 'SEGI_28445' => 'sgi', 'SEGI_37452' => 'sgi', 'SGA_v2.0_scaffold188G40336' => 'sas', 'SGA_v2.0_scaffold228G43247' => 'sas', 'SGA_v2.0_scaffold280G46853' => 'sas', 'SGA_v2.0_scaffold34G13808' => 'sas', 'SGA_v2.0_scaffold40G15576' => 'sas', 'SGA_v2.0_scaffold611G53188' => 'sas', 'SGA_v2.0_scaffold78G25461' => 'sas', 'SGA_v2.0_scaffold90G27888' => 'sas', 'SHI08601' => 'shi', 'SHI08606' => 'shi', 'SHI17117' => 'shi', 'SHI17119' => 'shi', 'SMO118G0201' => 'smo', 'SMO169G0247' => 'smo', 'SMO176G0006' => 'smo', 'SMO176G0015' => 'smo', 'SMO202G0006' => 'smo', 'SMO240G0050' => 'smo', 'SMO286G0009' => 'smo', 'SMO338G0033' => 'smo', 'SMO356G0533' => 'smo', 'SMO364G0382' => 'smo', 'SMO367G0166' => 'smo', 'SMO367G1098' => 'smo', 'Solyc01g009920.3' => 'sly', 'Solyc01g099300.3' => 'sly', 'Solyc02g084700.3' => 'sly', 'Solyc03g097520.3' => 'sly', 'Solyc06g071580.3' => 'sly', 'Solyc10g081760.3' => 'sly', 'Sopen01g005480' => 'spe', 'Sopen01g042850' => 'spe', 'Sopen02g029370' => 'spe', 'Sopen03g028280' => 'spe', 'Sopen06g027870' => 'spe', 'Sopen10g032270' => 'spe', 'Sp5g18180' => 'spa', 'Sp6g12880' => 'spa', 'Sp6g30850' => 'spa', 'Sp7g22960' => 'spa', 'Sp7g34010' => 'spa', 'SpUn1326_0010' => 'spa', 'TAR371G0242' => 'tar', 'TAR622G0638' => 'tar', 'TAR628G1548' => 'tar', 'TAR629G1079' => 'tar', 'TAR629G3413' => 'tar', 'THA.LOC104804249' => 'tha', 'THA.LOC104808315' => 'tha', 'THA.LOC104809238' => 'tha', 'THA.LOC104825484' => 'tha', 'Thecc.01G025500' => 'tca', 'Thecc.03G015800' => 'tca', 'Thecc.03G018000' => 'tca', 'Thecc.03G134800' => 'tca', 'Thecc.04G014700' => 'tca', 'Thhalv10006991m.g' => 'esa', 'Thhalv10012707m.g' => 'esa', 'Thhalv10015739m.g' => 'esa', 'Thhalv10024553m.g' => 'esa', 'Thhalv10024673m.g' => 'esa', 'Thhalv10029187m.g' => 'esa', 'TPR.G12971' => 'tpr', 'TPR.G29396' => 'tpr', 'TPR.G33376' => 'tpr', 'TPR.G35508' => 'tpr', 'TPR.G35516' => 'tpr', 'TPR.G37317' => 'tpr', 'TPR.G37389' => 'tpr', 'TPR.G37523' => 'tpr', 'TPR.G559' => 'tpr', 'TWI14G0070' => 'twi', 'TWI14G0729' => 'twi', 'TWI18G0596' => 'twi', 'TWI39G0780' => 'twi', 'TWI39G0850' => 'twi', 'TWI73G1052' => 'twi', 'unitig_52.g17485' => 'ugi', 'unitig_61.g26355' => 'ugi', 'vmacro01040' => 'vma', 'vmacro16731' => 'vma', 'vmacro18270' => 'vma', 'vmacro19142' => 'vma', 'vmacro19407' => 'vma', 'vmacro19408' => 'vma', 'vmacro21899' => 'vma', 'vmacro21900' => 'vma', 'vmacro21901' => 'vma', 'VMungo0251G0490' => 'vmu', 'VMungo0251G1748' => 'vmu', 'VMungo1309G0421' => 'vmu', 'Zm00001eb086500' => 'zma', 'Zm00001eb150680' => 'zma', 'Zm00001eb162330' => 'zma', 'Zm00001eb203130' => 'zma', 'Zm00001eb369480' => 'zma', 'Zm00001eb382340' => 'zma', 'Zm00001eb416360' => 'zma' ) $gf_id = 'HOM05D000902' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000902' ) $data_identifier = 'HOM05D000902' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 13, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 10, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 6, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 9, 'hma' => (int) 12, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 4, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 6, 'ppa' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 6, 'rch' => (int) 9, 'rsi' => (int) 9, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 12, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 3, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416360' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000902', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '663', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02470' => 'bna', 'A01p16260' => 'bna', 'A02p01680' => 'bna', 'A03p16600' => 'bna', 'A03p55660' => 'bna', 'A03p64160' => 'bna', 'A03p64170' => 'bna', 'A08p31900' => 'bna', 'A09p59530' => 'bna', 'A10p08230' => 'bna', 'A10p25090' => 'bna', 'Aa31LG3G7100' => 'aar', 'Aa31LG3G7110' => 'aar', 'Aa31LG6G13160' => 'aar', 'Aa31LG7G10770' => 'aar', 'Aa31LG7G3830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2723' => 'aag', 'Actinidia08045' => 'ach', 'Actinidia08888' => 'ach', 'Actinidia18333' => 'ach', 'Actinidia19334' => 'ach', 'Actinidia25552' => 'ach', 'Actinidia26089' => 'ach', 'Actinidia30615' => 'ach', 'Actinidia30616' => 'ach', 'Actinidia33083' => 'ach', 'Actinidia35762' => 'ach', 'Ah.02g110620' => 'amhyb', 'Ah.11g046390' => 'amhyb', 'AL1G31670' => 'aly', 'AL6G23730' => 'aly', 'AL7G14740' => 'aly', 'AL7G14750' => 'aly', 'AL7G14760' => 'aly', 'AL7G28220' => 'aly', 'AL8G24940' => 'aly', 'Aqoxy3G01665' => 'aox', 'Aqoxy3G02853' => 'aox', 'Aqoxy5G01513' => 'aox', 'Aqoxy5G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8SKA4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ75LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKDA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0LJZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7REX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZP4YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWX7I5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2QKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS0L9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPCD8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q161UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC7XCF' => 'arhy', 'AT1G19100' => 'ath', 'AT4G24970' => 'ath', 'AT4G36270' => 'ath', 'AT4G36280' => 'ath', 'AT4G36290' => 'ath', 'AT5G13130' => 'ath', 'AT5G50780' => 'ath', 'ATR0582G266' => 'atr', 'ATR0661G195' => 'atr', 'ATR1152G031' => 'atr', 'Atru.chr11.2382' => 'acertr', 'Atru.chr12.2337' => 'acertr', 'Atru.chr3.744' => 'acertr', 'Atru.chr6.1870' => 'acertr', 'Atru.chr9.2515' => 'acertr', 'AUR62004120' => 'cqu', 'AUR62005667' => 'cqu', 'AUR62007634' => 'cqu', 'AUR62008186' => 'cqu', 'AUR62008187' => 'cqu', 'AUR62008188' => 'cqu', 'AUR62027954' => 'cqu', 'AUR62028766' => 'cqu', 'AUR62028767' => 'cqu', 'AUR62028768' => 'cqu', 'AUR62028886' => 'cqu', 'AUR62029563' => 'cqu', 'AUR62038832' => 'cqu', 'BcaB01g04149' => 'bca', 'BcaB03g12940' => 'bca', 'BcaB03g13090' => 'bca', 'BcaB03g14466' => 'bca', 'BcaB05g24035' => 'bca', 'BcaC01g06050' => 'bca', 'BcaC04g19148' => 'bca', 'BcaC04g20761' => 'bca', 'BcaC06g32845' => 'bca', 'BcaC07g41274' => 'bca', 'BcaC09g50827' => 'bca', 'BcaNung00741' => 'bca', 'BcaNung00742' => 'bca', 'BcaNung01859' => 'bca', 'BcaNung03985' => 'bca', 'BcaNung03989' => 'bca', 'BcaNung05661' => 'bca', 'BolC1t00257H' => 'bol', 'BolC1t01956H' => 'bol', 'BolC2t06534H' => 'bol', 'BolC3t14334H' => 'bol', 'BolC5t30451H' => 'bol', 'BolC7t45880H' => 'bol', 'BolC7t46586H' => 'bol', 'BolC8t49301H' => 'bol', 'BolC8t51837H' => 'bol', 'BolC9t56822H' => 'bol', 'BolC9t59235H' => 'bol', 'BraA01t00234Z' => 'bra', 'BraA01t01563Z' => 'bra', 'BraA02t05147Z' => 'bra', 'BraA03t10947Z' => 'bra', 'BraA03t14633Z' => 'bra', 'BraA08t35112Z' => 'bra', 'BraA09t41330Z' => 'bra', 'BraA10t44570Z' => 'bra', 'C01p02670' => 'bna', 'C01p20260' => 'bna', 'C02p05890' => 'bna', 'C03p19530' => 'bna', 'C05p17470' => 'bna', 'C07p53900' => 'bna', 'C07p61630' => 'bna', 'C08p16800' => 'bna', 'C08p42810' => 'bna', 'C09p39480' => 'bna', 'C09p63980' => 'bna', 'CAN.G1001.7' => 'can', 'CAN.G1034.55' => 'can', 'CAN.G143.7' => 'can', 'CAN.G3340.1' => 'can', 'CAN.G358.19' => 'can', 'CAN.G373.2' => 'can', 'CAN.G674.16' => 'can', 'CAN.G674.17' => 'can', 'CAN.G674.18' => 'can', 'CAN.G732.2' => 'can', 'CAN.G732.3' => 'can', 'CAN.G993.39' => 'can', 'CANSAT01G2052' => 'cansat', 'CANSAT80G0070' => 'cansat', 'CANSAT80G0483' => 'cansat', 'CANSAT80G0625' => 'cansat', 'CARHR019690' => 'chi', 'CARHR080280' => 'chi', 'CARHR152750' => 'chi', 'CARHR152760' => 'chi', 'CARHR152770' => 'chi', 'CARHR200340' => 'chi', 'CARHR232370' => 'chi', 'CARHR244670' => 'chi', 'CARHR244680' => 'chi', 'CARHR257520' => 'chi', 'Carub.0001s1872' => 'cru', 'Carub.0006s1130' => 'cru', 'Carub.0007s0396' => 'cru', 'Carub.0007s0397' => 'cru', 'Carub.0007s1608' => 'cru', 'Carub.0008s1068' => 'cru', 'Carub.0008s1077' => 'cru', 'Ca_16158_v3' => 'car', 'Ca_17571_v3' => 'car', 'Ca_21936_v3' => 'car', 'Ca_22350_v3' => 'car', 'CBR_g22445' => 'cbr', 'CBR_g26290' => 'cbr', 'Cc04_g09610' => 'ccan', 'Cc04_g12280' => 'ccan', 'Cc07_g10230' => 'ccan', 'CDE02G0093' => 'cde', 'CDE02G0701' => 'cde', 'CDE04G1050' => 'cde', 'CDE05G1833' => 'cde', 'CDE05G3058' => 'cde', 'CDE05G3380' => 'cde', 'CDE06G0536' => 'cde', 'Cfa006923' => 'cfa', 'Cfa009402' => 'cfa', 'Cfa018751' => 'cfa', 'Cfa019164' => 'cfa', 'Cfa022935' => 'cfa', 'Ciclev10019081m.g' => 'ccl', 'Ciclev10025076m.g' => 'ccl', 'Ciclev10030712m.g' => 'ccl', 'Ciclev10033760m.g' => 'ccl', 'CiPaw.05G105600' => 'cil', 'CiPaw.08G136700' => 'cil', 'CiPaw.11G003900' => 'cil', 'CiPaw.11G023700' => 'cil', 'CiPaw.12G003700' => 'cil', 'ClCG06G017100' => 'cla', 'ClCG06G018110' => 'cla', 'ClCG07G008800' => 'cla', 'ClCG07G015330' => 'cla', 'COL.COLO4_13698' => 'col', 'COL.COLO4_16659' => 'col', 'COL.COLO4_21986' => 'col', 'COL.COLO4_24049' => 'col', 'COL.COLO4_29061' => 'col', 'COL.COLO4_29075' => 'col', 'COL.COLO4_30094' => 'col', 'Cpa.g.c33689' => 'cpa', 'Cpa.g.sc108.39' => 'cpa', 'Cpa.g.sc108.41' => 'cpa', 'Cpa.g.sc1163.1' => 'cpa', 'Cpa.g.sc4.155' => 'cpa', 'Cpa.g.sc6.194' => 'cpa', 'CsaV3_1G000340' => 'csa', 'CsaV3_1G001400' => 'csa', 'CsaV3_4G002220' => 'csa', 'CsaV3_4G005370' => 'csa', 'CSS0007487' => 'camsi', 'CSS0008066' => 'camsi', 'CSS0009120' => 'camsi', 'CSS0015512' => 'camsi', 'CSS0022409' => 'camsi', 'CSS0025358' => 'camsi', 'CSS0044547' => 'camsi', 'DCAR_013057' => 'dca', 'DCAR_015058' => 'dca', 'DCAR_016027' => 'dca', 'DCAR_017327' => 'dca', 'DCAR_020743' => 'dca', 'DCAR_026157' => 'dca', 'DCAR_032339' => 'dca', 'DCAR_032340' => 'dca', 'Dinv11200' => 'din', 'Dinv11201' => 'din', 'Dinv20631' => 'din', 'Dinv23182' => 'din', 'Dinv33466' => 'din', 'Dinv33583' => 'din', 'Dinv38565' => 'din', 'Duzib068G0200' => 'dzi', 'Duzib147G0132' => 'dzi', 'Duzib147G0635' => 'dzi', 'Duzib205G1670' => 'dzi', 'Duzib251G0606' => 'dzi', 'ECA232G3336' => 'eca', 'ECA232G3763' => 'eca', 'ECA232G4845' => 'eca', 'ECA234G1607' => 'eca', 'ECA246G0932' => 'eca', 'ECA247G0781' => 'eca', 'ECA247G1932' => 'eca', 'ECA247G2079' => 'eca', 'ECA247G3338' => 'eca', 'ECA247G4115' => 'eca', 'EL10Ac3g06552' => 'bvu', 'EL10Ac5g10721' => 'bvu', 'EL10Ac5g10722' => 'bvu', 'EL10Ac5g10723' => 'bvu', 'EL10Ac5g11361' => 'bvu', 'EL10Ac6g13553' => 'bvu', 'EL10As8g23872' => 'bvu', 'Eucgr.B00250' => 'egr', 'Eucgr.B00251' => 'egr', 'Eucgr.B03533' => 'egr', 'Eucgr.I02381' => 'egr', 'Eucgr.K02700' => 'egr', 'FAN02G0174' => 'fan', 'FAN02G3146' => 'fan', 'FAN04G1672' => 'fan', 'FAN04G2273' => 'fan', 'FAN05G2791' => 'fan', 'FAN05G4035' => 'fan', 'FAN07G0834' => 'fan', 'FAN08G1198' => 'fan', 'FAN09G4182' => 'fan', 'FAN12G0496' => 'fan', 'FAN13G1027' => 'fan', 'FAN13G2951' => 'fan', 'FAN14G0705' => 'fan', 'FAN14G0720' => 'fan', 'FAN17G0201' => 'fan', 'FAN17G2665' => 'fan', 'FAN18G1456' => 'fan', 'FAN18G1525' => 'fan', 'FAN18G3500' => 'fan', 'FAN28G2670' => 'fan', 'FvH4_1g12391' => 'fve', 'FvH4_4g23220' => 'fve', 'FvH4_5g08810' => 'fve', 'FvH4_5g28960' => 'fve', 'FvH4_6g42820' => 'fve', 'FvH4_6g51110' => 'fve', 'Glyma.02G051802' => 'gma', 'Glyma.04G185300' => 'gma', 'Glyma.05G202900' => 'gma', 'Glyma.08G010300' => 'gma', 'Glyma.16G131900' => 'gma', 'Glyma.17G087900' => 'gma', 'Gohir.A07G048600' => 'ghi', 'Gohir.A11G179000' => 'ghi', 'Gohir.A12G140900' => 'ghi', 'Gohir.A12G140950' => 'ghi', 'Gohir.A12G191700' => 'ghi', 'Gohir.A13G086300' => 'ghi', 'Gohir.D07G052900' => 'ghi', 'Gohir.D11G186600' => 'ghi', 'Gohir.D12G145575' => 'ghi', 'Gohir.D12G145650' => 'ghi', 'Gohir.D12G145725' => 'ghi', 'Gohir.D12G194050' => 'ghi', 'Gohir.D13G091800' => 'ghi', 'Gorai.001G055900' => 'gra', 'Gorai.007G198400' => 'gra', 'Gorai.008G157000' => 'gra', 'Gorai.008G157100' => 'gra', 'Gorai.008G208700' => 'gra', 'Gorai.010G138700' => 'gra', 'GSVIVG01000977001' => 'vvi', 'GSVIVG01007708001' => 'vvi', 'GSVIVG01008587001' => 'vvi', 'GSVIVG01018849001' => 'vvi', 'GSVIVG01032432001' => 'vvi', 'HanXRQChr02g0034131' => 'han', 'HanXRQChr02g0035981' => 'han', 'HanXRQChr02g0035991' => 'han', 'HanXRQChr05g0155611' => 'han', 'HanXRQChr05g0155621' => 'han', 'HanXRQChr08g0236501' => 'han', 'HanXRQChr09g0261321' => 'han', 'HanXRQChr09g0272081' => 'han', 'HanXRQChr10g0310741' => 'han', 'HanXRQChr11g0325591' => 'han', 'HanXRQChr12g0385691' => 'han', 'HanXRQChr13g0387801' => 'han', 'HanXRQChr15g0463011' => 'han', 'Haze_03826' => 'cav', 'Haze_03827' => 'cav', 'Haze_07183' => 'cav', 'Haze_07537' => 'cav', 'Haze_07539' => 'cav', 'Haze_12461' => 'cav', 'Haze_16115' => 'cav', 'Haze_16808' => 'cav', 'Haze_18531' => 'cav', 'Hma1.2p1_0046F.1_g026700' => 'hma', 'Hma1.2p1_0046F.1_g026710' => 'hma', 'Hma1.2p1_0168F.1_g074340' => 'hma', 'Hma1.2p1_0266F.1_g107030' => 'hma', 'Hma1.2p1_0266F.1_g107060' => 'hma', 'Hma1.2p1_0275F.1_g110510' => 'hma', 'Hma1.2p1_0592F.1_g185490' => 'hma', 'Hma1.2p1_0592F.1_g185500' => 'hma', 'Hma1.2p1_0592F.1_g185510' => 'hma', 'Hma1.2p1_0592F.1_g185520' => 'hma', 'Hma1.2p1_0592F.1_g185530' => 'hma', 'Hma1.2p1_0818F.1_g223450' => 'hma', 'HPP92_009708' => 'vpl', 'HPP92_009793' => 'vpl', 'HPP92_009796' => 'vpl', 'HPP92_009797' => 'vpl', 'HPP92_014940' => 'vpl', 'HPP92_014988' => 'vpl', 'Hund02463' => 'sun', 'Hund02760' => 'sun', 'Hund05071' => 'sun', 'Hund10108' => 'sun', 'Hund11204' => 'sun', 'Hund14016' => 'sun', 'Hund16464' => 'sun', 'Lalb_Chr09g0333391' => 'lal', 'Lalb_Chr11g0070461' => 'lal', 'Lalb_Chr12g0201671' => 'lal', 'Lalb_Chr13g0297161' => 'lal', 'Lj1g0002823' => 'lja', 'Lj3C1074T6' => 'lonja', 'Lj4A212T28' => 'lonja', 'Lj4g0005516' => 'lja', 'Lj4g0013705' => 'lja', 'Lj4g0027865' => 'lja', 'Lj5C92G16' => 'lonja', 'Lj5C92T12' => 'lonja', 'Lj7C596T3' => 'lonja', 'Lj9A446G59' => 'lonja', 'Lj9A482G21' => 'lonja', 'Lsat_1_v5_gn_1_28261' => 'lsa', 'Lsat_1_v5_gn_1_28281' => 'lsa', 'Lsat_1_v5_gn_1_32721' => 'lsa', 'Lsat_1_v5_gn_4_151760' => 'lsa', 'Lsat_1_v5_gn_4_2120' => 'lsa', 'Lsat_1_v5_gn_4_75761' => 'lsa', 'Lsat_1_v5_gn_5_10920' => 'lsa', 'Manes.02G099900' => 'mes', 'Manes.11G096200' => 'mes', 'Manes.12G007200' => 'mes', 'Manes.14G048300' => 'mes', 'Manes.17G114700' => 'mes', 'Mapoly0002s0070' => 'mpo', 'Mapoly0029s0099' => 'mpo', 'MBI07_g24742_MAGBIO' => 'mbi', 'MBI10_g27988_MAGBIO' => 'mbi', 'MBI11_g13057_MAGBIO' => 'mbi', 'MD02G1137200' => 'mdo', 'MD06G1137200' => 'mdo', 'MD07G1122300' => 'mdo', 'MD09G1078200' => 'mdo', 'MD13G1123700' => 'mdo', 'MD14G1151900' => 'mdo', 'MD17G1030900' => 'mdo', 'MD17G1068200' => 'mdo', 'MD17G1068600' => 'mdo', 'Medtr3g077540' => 'mtr', 'Medtr4g105530' => 'mtr', 'Medtr8g076580' => 'mtr', 'Medtr8g076590' => 'mtr', 'Medtr8g096410' => 'mtr', 'MELO3C016411.2' => 'cme', 'MELO3C017780.2' => 'cme', 'MELO3C022560.2' => 'cme', 'MELO3C026187.2' => 'cme', 'MELO3C026286.2' => 'cme', 'MELO3C032854.2' => 'cme', 'Migut.H02495' => 'egut', 'Migut.I00561' => 'egut', 'Migut.K01015' => 'egut', 'Migut.K01016' => 'egut', 'Migut.L00743' => 'egut', 'Migut.L00744' => 'egut', 'Migut.L00746' => 'egut', 'Migut.L00798' => 'egut', 'Migut.L00799' => 'egut', 'Migut.N02096' => 'egut', 'MSTRG.11259' => 'ama', 'MSTRG.23142' => 'ama', 'MSTRG.2499' => 'ama', 'Nitab4.5_0000003g0730' => 'nta', 'Nitab4.5_0000137g0020' => 'nta', 'Nitab4.5_0000721g0210' => 'nta', 'Nitab4.5_0000723g0050' => 'nta', 'Nitab4.5_0000913g0070' => 'nta', 'Nitab4.5_0001332g0040' => 'nta', 'Nitab4.5_0001771g0050' => 'nta', 'Nitab4.5_0001918g0050' => 'nta', 'Nitab4.5_0002686g0030' => 'nta', 'Nitab4.5_0003156g0020' => 'nta', 'Nitab4.5_0003383g0040' => 'nta', 'Nitab4.5_0003918g0010' => 'nta', 'Nitab4.5_0006760g0010' => 'nta', 'Nn1g05981' => 'nnu', 'Nn1g06288' => 'nnu', 'Nn3g16371' => 'nnu', 'Nn3g16786' => 'nnu', 'Nn4g22232' => 'nnu', 'Oeu005144.1' => 'oeu', 'Oeu005145.1' => 'oeu', 'Oeu011348.1' => 'oeu', 'Oeu016415.1' => 'oeu', 'Oeu023501.1' => 'oeu', 'Oeu044473.1' => 'oeu', 'Oeu048892.2' => 'oeu', 'Os01g0549200' => 'osa', 'Os02g0469300' => 'osa', 'Os04g0311100' => 'osa', 'Os06g0474900' => 'osa', 'Os10g0181700' => 'osa', 'Os11g0454800' => 'osa', 'Peaxi162Scf00037g00714' => 'pax', 'Peaxi162Scf00084g01217' => 'pax', 'Peaxi162Scf00257g00217' => 'pax', 'Peaxi162Scf00516g00215' => 'pax', 'Peaxi162Scf00689g00123' => 'pax', 'PGR044G2719' => 'pgr', 'PGR083G1360' => 'pgr', 'PGR102G2849' => 'pgr', 'PGR119G2534' => 'pgr', 'PGSC0003DMG400003538' => 'stu', 'PGSC0003DMG400028138' => 'stu', 'PGSC0003DMG400031732' => 'stu', 'PGSC0003DMG400038165' => 'stu', 'Phvul.002G284600' => 'pvu', 'Phvul.003G258200' => 'pvu', 'Phvul.009G176500' => 'pvu', 'Potri.003G167201' => 'ptr', 'Potri.005G118400' => 'ptr', 'Potri.012G089000' => 'ptr', 'Potri.012G102800' => 'ptr', 'Potri.015G079400' => 'ptr', 'Potri.015G100900' => 'ptr', 'Pp3c14_9810' => 'ppa', 'Pp3c15_10450' => 'ppa', 'Pp3c20_19150' => 'ppa', 'Pp3c23_12740' => 'ppa', 'Pp3c23_6310' => 'ppa', 'Pp3c24_3720' => 'ppa', 'Pp3c27_2580' => 'ppa', 'Pp3c9_8990' => 'ppa', 'PRCOL_00002854' => 'pco', 'Prupe.1G221200' => 'ppe', 'Prupe.3G289000' => 'ppe', 'Prupe.5G147000' => 'ppe', 'Prupe.6G157300' => 'ppe', 'Prupe.7G163400' => 'ppe', 'Psat0s2177g0040' => 'psa', 'Psat3g174760' => 'psa', 'Psat3g192160' => 'psa', 'Psat4g058520' => 'psa', 'Psat4g096840' => 'psa', 'Psat7g037320' => 'psa', 'PSO017G1274' => 'pso', 'PSO017G5166' => 'pso', 'PSO063G4558' => 'pso', 'PSO170G4458' => 'pso', 'PSO170G5005' => 'pso', 'PSO210G6156' => 'pso', 'PSO210G6635' => 'pso', 'PSO210G7397' => 'pso', 'PSO210G7700' => 'pso', 'PSO455G0035' => 'pso', 'PSO455G0180' => 'pso', 'PSO478G4515' => 'pso', 'PSO832G1305' => 'pso', 'PSO832G3489' => 'pso', 'QL02p075247' => 'qlo', 'QL03p051148' => 'qlo', 'QL05p010313' => 'qlo', 'QL06p034627' => 'qlo', 'QL10p001889' => 'qlo', 'QL10p010846' => 'qlo', 'RcHm_v2.0_Chr1g0350621' => 'rch', 'RcHm_v2.0_Chr1g0350641' => 'rch', 'RcHm_v2.0_Chr2g0092891' => 'rch', 'RcHm_v2.0_Chr2g0100251' => 'rch', 'RcHm_v2.0_Chr2g0158661' => 'rch', 'RcHm_v2.0_Chr2g0172741' => 'rch', 'RcHm_v2.0_Chr4g0429571' => 'rch', 'RcHm_v2.0_Chr5g0042471' => 'rch', 'RcHm_v2.0_Chr7g0189451' => 'rch', 'Rhsim08G0052000' => 'rsi', 'Rhsim08G0174400' => 'rsi', 'Rhsim08G0193200' => 'rsi', 'Rhsim10G0214800' => 'rsi', 'Rhsim10G0214900' => 'rsi', 'Rhsim10G0215000' => 'rsi', 'Rhsim12G0022900' => 'rsi', 'Rhsim12G0177500' => 'rsi', 'Rhsim12G0177700' => 'rsi', 'Sabra03G0122600' => 'sbr', 'Sabra05G0097400' => 'sbr', 'Sabra12G0064100' => 'sbr', 'Sabra15G0121300' => 'sbr', 'SalBow2G0642' => 'sbo', 'SalBow5G2667' => 'sbo', 'SalBow5G4873' => 'sbo', 'SalBow8G2395' => 'sbo', 'Sc03g0003290' => 'sci', 'Sc10g0010130' => 'sci', 'Sc22g0003650' => 'sci', 'Sed0001603' => 'sed', 'Sed0004259' => 'sed', 'Sed0006789' => 'sed', 'Sed0011838' => 'sed', 'Sed0012964' => 'sed', 'Sed0016383' => 'sed', 'Sed0019010' => 'sed', 'Sed0020188' => 'sed', 'SEGI_04702' => 'sgi', 'SEGI_17231' => 'sgi', 'SEGI_18877' => 'sgi', 'SEGI_25196' => 'sgi', 'SEGI_25515' => 'sgi', 'SEGI_28445' => 'sgi', 'SEGI_37452' => 'sgi', 'SGA_v2.0_scaffold188G40336' => 'sas', 'SGA_v2.0_scaffold228G43247' => 'sas', 'SGA_v2.0_scaffold280G46853' => 'sas', 'SGA_v2.0_scaffold34G13808' => 'sas', 'SGA_v2.0_scaffold40G15576' => 'sas', 'SGA_v2.0_scaffold611G53188' => 'sas', 'SGA_v2.0_scaffold78G25461' => 'sas', 'SGA_v2.0_scaffold90G27888' => 'sas', 'SHI08601' => 'shi', 'SHI08606' => 'shi', 'SHI17117' => 'shi', 'SHI17119' => 'shi', 'SMO118G0201' => 'smo', 'SMO169G0247' => 'smo', 'SMO176G0006' => 'smo', 'SMO176G0015' => 'smo', 'SMO202G0006' => 'smo', 'SMO240G0050' => 'smo', 'SMO286G0009' => 'smo', 'SMO338G0033' => 'smo', 'SMO356G0533' => 'smo', 'SMO364G0382' => 'smo', 'SMO367G0166' => 'smo', 'SMO367G1098' => 'smo', 'Solyc01g009920.3' => 'sly', 'Solyc01g099300.3' => 'sly', 'Solyc02g084700.3' => 'sly', 'Solyc03g097520.3' => 'sly', 'Solyc06g071580.3' => 'sly', 'Solyc10g081760.3' => 'sly', 'Sopen01g005480' => 'spe', 'Sopen01g042850' => 'spe', 'Sopen02g029370' => 'spe', 'Sopen03g028280' => 'spe', 'Sopen06g027870' => 'spe', 'Sopen10g032270' => 'spe', 'Sp5g18180' => 'spa', 'Sp6g12880' => 'spa', 'Sp6g30850' => 'spa', 'Sp7g22960' => 'spa', 'Sp7g34010' => 'spa', 'SpUn1326_0010' => 'spa', 'TAR371G0242' => 'tar', 'TAR622G0638' => 'tar', 'TAR628G1548' => 'tar', 'TAR629G1079' => 'tar', 'TAR629G3413' => 'tar', 'THA.LOC104804249' => 'tha', 'THA.LOC104808315' => 'tha', 'THA.LOC104809238' => 'tha', 'THA.LOC104825484' => 'tha', 'Thecc.01G025500' => 'tca', 'Thecc.03G015800' => 'tca', 'Thecc.03G018000' => 'tca', 'Thecc.03G134800' => 'tca', 'Thecc.04G014700' => 'tca', 'Thhalv10006991m.g' => 'esa', 'Thhalv10012707m.g' => 'esa', 'Thhalv10015739m.g' => 'esa', 'Thhalv10024553m.g' => 'esa', 'Thhalv10024673m.g' => 'esa', 'Thhalv10029187m.g' => 'esa', 'TPR.G12971' => 'tpr', 'TPR.G29396' => 'tpr', 'TPR.G33376' => 'tpr', 'TPR.G35508' => 'tpr', 'TPR.G35516' => 'tpr', 'TPR.G37317' => 'tpr', 'TPR.G37389' => 'tpr', 'TPR.G37523' => 'tpr', 'TPR.G559' => 'tpr', 'TWI14G0070' => 'twi', 'TWI14G0729' => 'twi', 'TWI18G0596' => 'twi', 'TWI39G0780' => 'twi', 'TWI39G0850' => 'twi', 'TWI73G1052' => 'twi', 'unitig_52.g17485' => 'ugi', 'unitig_61.g26355' => 'ugi', 'vmacro01040' => 'vma', 'vmacro16731' => 'vma', 'vmacro18270' => 'vma', 'vmacro19142' => 'vma', 'vmacro19407' => 'vma', 'vmacro19408' => 'vma', 'vmacro21899' => 'vma', 'vmacro21900' => 'vma', 'vmacro21901' => 'vma', 'VMungo0251G0490' => 'vmu', 'VMungo0251G1748' => 'vmu', 'VMungo1309G0421' => 'vmu', 'Zm00001eb086500' => 'zma', 'Zm00001eb150680' => 'zma', 'Zm00001eb162330' => 'zma', 'Zm00001eb203130' => 'zma', 'Zm00001eb369480' => 'zma', 'Zm00001eb382340' => 'zma', 'Zm00001eb416360' => 'zma' ), 'gf_id' => 'HOM05D000902', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000902' ), 'data_identifier' => 'HOM05D000902', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000902', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '663', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02470' => 'bna', 'A01p16260' => 'bna', 'A02p01680' => 'bna', 'A03p16600' => 'bna', 'A03p55660' => 'bna', 'A03p64160' => 'bna', 'A03p64170' => 'bna', 'A08p31900' => 'bna', 'A09p59530' => 'bna', 'A10p08230' => 'bna', 'A10p25090' => 'bna', 'Aa31LG3G7100' => 'aar', 'Aa31LG3G7110' => 'aar', 'Aa31LG6G13160' => 'aar', 'Aa31LG7G10770' => 'aar', 'Aa31LG7G3830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2723' => 'aag', 'Actinidia08045' => 'ach', 'Actinidia08888' => 'ach', 'Actinidia18333' => 'ach', 'Actinidia19334' => 'ach', 'Actinidia25552' => 'ach', 'Actinidia26089' => 'ach', 'Actinidia30615' => 'ach', 'Actinidia30616' => 'ach', 'Actinidia33083' => 'ach', 'Actinidia35762' => 'ach', 'Ah.02g110620' => 'amhyb', 'Ah.11g046390' => 'amhyb', 'AL1G31670' => 'aly', 'AL6G23730' => 'aly', 'AL7G14740' => 'aly', 'AL7G14750' => 'aly', 'AL7G14760' => 'aly', 'AL7G28220' => 'aly', 'AL8G24940' => 'aly', 'Aqoxy3G01665' => 'aox', 'Aqoxy3G02853' => 'aox', 'Aqoxy5G01513' => 'aox', 'Aqoxy5G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8SKA4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ75LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKDA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0LJZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7REX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZP4YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWX7I5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2QKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS0L9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPCD8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q161UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC7XCF' => 'arhy', 'AT1G19100' => 'ath', 'AT4G24970' => 'ath', 'AT4G36270' => 'ath', 'AT4G36280' => 'ath', 'AT4G36290' => 'ath', 'AT5G13130' => 'ath', 'AT5G50780' => 'ath', 'ATR0582G266' => 'atr', 'ATR0661G195' => 'atr', 'ATR1152G031' => 'atr', 'Atru.chr11.2382' => 'acertr', 'Atru.chr12.2337' => 'acertr', 'Atru.chr3.744' => 'acertr', 'Atru.chr6.1870' => 'acertr', 'Atru.chr9.2515' => 'acertr', 'AUR62004120' => 'cqu', 'AUR62005667' => 'cqu', 'AUR62007634' => 'cqu', 'AUR62008186' => 'cqu', 'AUR62008187' => 'cqu', 'AUR62008188' => 'cqu', 'AUR62027954' => 'cqu', 'AUR62028766' => 'cqu', 'AUR62028767' => 'cqu', 'AUR62028768' => 'cqu', 'AUR62028886' => 'cqu', 'AUR62029563' => 'cqu', 'AUR62038832' => 'cqu', 'BcaB01g04149' => 'bca', 'BcaB03g12940' => 'bca', 'BcaB03g13090' => 'bca', 'BcaB03g14466' => 'bca', 'BcaB05g24035' => 'bca', 'BcaC01g06050' => 'bca', 'BcaC04g19148' => 'bca', 'BcaC04g20761' => 'bca', 'BcaC06g32845' => 'bca', 'BcaC07g41274' => 'bca', 'BcaC09g50827' => 'bca', 'BcaNung00741' => 'bca', 'BcaNung00742' => 'bca', 'BcaNung01859' => 'bca', 'BcaNung03985' => 'bca', 'BcaNung03989' => 'bca', 'BcaNung05661' => 'bca', 'BolC1t00257H' => 'bol', 'BolC1t01956H' => 'bol', 'BolC2t06534H' => 'bol', 'BolC3t14334H' => 'bol', 'BolC5t30451H' => 'bol', 'BolC7t45880H' => 'bol', 'BolC7t46586H' => 'bol', 'BolC8t49301H' => 'bol', 'BolC8t51837H' => 'bol', 'BolC9t56822H' => 'bol', 'BolC9t59235H' => 'bol', 'BraA01t00234Z' => 'bra', 'BraA01t01563Z' => 'bra', 'BraA02t05147Z' => 'bra', 'BraA03t10947Z' => 'bra', 'BraA03t14633Z' => 'bra', 'BraA08t35112Z' => 'bra', 'BraA09t41330Z' => 'bra', 'BraA10t44570Z' => 'bra', 'C01p02670' => 'bna', 'C01p20260' => 'bna', 'C02p05890' => 'bna', 'C03p19530' => 'bna', 'C05p17470' => 'bna', 'C07p53900' => 'bna', 'C07p61630' => 'bna', 'C08p16800' => 'bna', 'C08p42810' => 'bna', 'C09p39480' => 'bna', 'C09p63980' => 'bna', 'CAN.G1001.7' => 'can', 'CAN.G1034.55' => 'can', 'CAN.G143.7' => 'can', 'CAN.G3340.1' => 'can', 'CAN.G358.19' => 'can', 'CAN.G373.2' => 'can', 'CAN.G674.16' => 'can', 'CAN.G674.17' => 'can', 'CAN.G674.18' => 'can', 'CAN.G732.2' => 'can', 'CAN.G732.3' => 'can', 'CAN.G993.39' => 'can', 'CANSAT01G2052' => 'cansat', 'CANSAT80G0070' => 'cansat', 'CANSAT80G0483' => 'cansat', 'CANSAT80G0625' => 'cansat', 'CARHR019690' => 'chi', 'CARHR080280' => 'chi', 'CARHR152750' => 'chi', 'CARHR152760' => 'chi', 'CARHR152770' => 'chi', 'CARHR200340' => 'chi', 'CARHR232370' => 'chi', 'CARHR244670' => 'chi', 'CARHR244680' => 'chi', 'CARHR257520' => 'chi', 'Carub.0001s1872' => 'cru', 'Carub.0006s1130' => 'cru', 'Carub.0007s0396' => 'cru', 'Carub.0007s0397' => 'cru', 'Carub.0007s1608' => 'cru', 'Carub.0008s1068' => 'cru', 'Carub.0008s1077' => 'cru', 'Ca_16158_v3' => 'car', 'Ca_17571_v3' => 'car', 'Ca_21936_v3' => 'car', 'Ca_22350_v3' => 'car', 'CBR_g22445' => 'cbr', 'CBR_g26290' => 'cbr', 'Cc04_g09610' => 'ccan', 'Cc04_g12280' => 'ccan', 'Cc07_g10230' => 'ccan', 'CDE02G0093' => 'cde', 'CDE02G0701' => 'cde', 'CDE04G1050' => 'cde', 'CDE05G1833' => 'cde', 'CDE05G3058' => 'cde', 'CDE05G3380' => 'cde', 'CDE06G0536' => 'cde', 'Cfa006923' => 'cfa', 'Cfa009402' => 'cfa', 'Cfa018751' => 'cfa', 'Cfa019164' => 'cfa', 'Cfa022935' => 'cfa', 'Ciclev10019081m.g' => 'ccl', 'Ciclev10025076m.g' => 'ccl', 'Ciclev10030712m.g' => 'ccl', 'Ciclev10033760m.g' => 'ccl', 'CiPaw.05G105600' => 'cil', 'CiPaw.08G136700' => 'cil', 'CiPaw.11G003900' => 'cil', 'CiPaw.11G023700' => 'cil', 'CiPaw.12G003700' => 'cil', 'ClCG06G017100' => 'cla', 'ClCG06G018110' => 'cla', 'ClCG07G008800' => 'cla', 'ClCG07G015330' => 'cla', 'COL.COLO4_13698' => 'col', 'COL.COLO4_16659' => 'col', 'COL.COLO4_21986' => 'col', 'COL.COLO4_24049' => 'col', 'COL.COLO4_29061' => 'col', 'COL.COLO4_29075' => 'col', 'COL.COLO4_30094' => 'col', 'Cpa.g.c33689' => 'cpa', 'Cpa.g.sc108.39' => 'cpa', 'Cpa.g.sc108.41' => 'cpa', 'Cpa.g.sc1163.1' => 'cpa', 'Cpa.g.sc4.155' => 'cpa', 'Cpa.g.sc6.194' => 'cpa', 'CsaV3_1G000340' => 'csa', 'CsaV3_1G001400' => 'csa', 'CsaV3_4G002220' => 'csa', 'CsaV3_4G005370' => 'csa', 'CSS0007487' => 'camsi', 'CSS0008066' => 'camsi', 'CSS0009120' => 'camsi', 'CSS0015512' => 'camsi', 'CSS0022409' => 'camsi', 'CSS0025358' => 'camsi', 'CSS0044547' => 'camsi', 'DCAR_013057' => 'dca', 'DCAR_015058' => 'dca', 'DCAR_016027' => 'dca', 'DCAR_017327' => 'dca', 'DCAR_020743' => 'dca', 'DCAR_026157' => 'dca', 'DCAR_032339' => 'dca', 'DCAR_032340' => 'dca', 'Dinv11200' => 'din', 'Dinv11201' => 'din', 'Dinv20631' => 'din', 'Dinv23182' => 'din', 'Dinv33466' => 'din', 'Dinv33583' => 'din', 'Dinv38565' => 'din', 'Duzib068G0200' => 'dzi', 'Duzib147G0132' => 'dzi', 'Duzib147G0635' => 'dzi', 'Duzib205G1670' => 'dzi', 'Duzib251G0606' => 'dzi', 'ECA232G3336' => 'eca', 'ECA232G3763' => 'eca', 'ECA232G4845' => 'eca', 'ECA234G1607' => 'eca', 'ECA246G0932' => 'eca', 'ECA247G0781' => 'eca', 'ECA247G1932' => 'eca', 'ECA247G2079' => 'eca', 'ECA247G3338' => 'eca', 'ECA247G4115' => 'eca', 'EL10Ac3g06552' => 'bvu', 'EL10Ac5g10721' => 'bvu', 'EL10Ac5g10722' => 'bvu', 'EL10Ac5g10723' => 'bvu', 'EL10Ac5g11361' => 'bvu', 'EL10Ac6g13553' => 'bvu', 'EL10As8g23872' => 'bvu', 'Eucgr.B00250' => 'egr', 'Eucgr.B00251' => 'egr', 'Eucgr.B03533' => 'egr', 'Eucgr.I02381' => 'egr', 'Eucgr.K02700' => 'egr', 'FAN02G0174' => 'fan', 'FAN02G3146' => 'fan', 'FAN04G1672' => 'fan', 'FAN04G2273' => 'fan', 'FAN05G2791' => 'fan', 'FAN05G4035' => 'fan', 'FAN07G0834' => 'fan', 'FAN08G1198' => 'fan', 'FAN09G4182' => 'fan', 'FAN12G0496' => 'fan', 'FAN13G1027' => 'fan', 'FAN13G2951' => 'fan', 'FAN14G0705' => 'fan', 'FAN14G0720' => 'fan', 'FAN17G0201' => 'fan', 'FAN17G2665' => 'fan', 'FAN18G1456' => 'fan', 'FAN18G1525' => 'fan', 'FAN18G3500' => 'fan', 'FAN28G2670' => 'fan', 'FvH4_1g12391' => 'fve', 'FvH4_4g23220' => 'fve', 'FvH4_5g08810' => 'fve', 'FvH4_5g28960' => 'fve', 'FvH4_6g42820' => 'fve', 'FvH4_6g51110' => 'fve', 'Glyma.02G051802' => 'gma', 'Glyma.04G185300' => 'gma', 'Glyma.05G202900' => 'gma', 'Glyma.08G010300' => 'gma', 'Glyma.16G131900' => 'gma', 'Glyma.17G087900' => 'gma', 'Gohir.A07G048600' => 'ghi', 'Gohir.A11G179000' => 'ghi', 'Gohir.A12G140900' => 'ghi', 'Gohir.A12G140950' => 'ghi', 'Gohir.A12G191700' => 'ghi', 'Gohir.A13G086300' => 'ghi', 'Gohir.D07G052900' => 'ghi', 'Gohir.D11G186600' => 'ghi', 'Gohir.D12G145575' => 'ghi', 'Gohir.D12G145650' => 'ghi', 'Gohir.D12G145725' => 'ghi', 'Gohir.D12G194050' => 'ghi', 'Gohir.D13G091800' => 'ghi', 'Gorai.001G055900' => 'gra', 'Gorai.007G198400' => 'gra', 'Gorai.008G157000' => 'gra', 'Gorai.008G157100' => 'gra', 'Gorai.008G208700' => 'gra', 'Gorai.010G138700' => 'gra', 'GSVIVG01000977001' => 'vvi', 'GSVIVG01007708001' => 'vvi', 'GSVIVG01008587001' => 'vvi', 'GSVIVG01018849001' => 'vvi', 'GSVIVG01032432001' => 'vvi', 'HanXRQChr02g0034131' => 'han', 'HanXRQChr02g0035981' => 'han', 'HanXRQChr02g0035991' => 'han', 'HanXRQChr05g0155611' => 'han', 'HanXRQChr05g0155621' => 'han', 'HanXRQChr08g0236501' => 'han', 'HanXRQChr09g0261321' => 'han', 'HanXRQChr09g0272081' => 'han', 'HanXRQChr10g0310741' => 'han', 'HanXRQChr11g0325591' => 'han', 'HanXRQChr12g0385691' => 'han', 'HanXRQChr13g0387801' => 'han', 'HanXRQChr15g0463011' => 'han', 'Haze_03826' => 'cav', 'Haze_03827' => 'cav', 'Haze_07183' => 'cav', 'Haze_07537' => 'cav', 'Haze_07539' => 'cav', 'Haze_12461' => 'cav', 'Haze_16115' => 'cav', 'Haze_16808' => 'cav', 'Haze_18531' => 'cav', 'Hma1.2p1_0046F.1_g026700' => 'hma', 'Hma1.2p1_0046F.1_g026710' => 'hma', 'Hma1.2p1_0168F.1_g074340' => 'hma', 'Hma1.2p1_0266F.1_g107030' => 'hma', 'Hma1.2p1_0266F.1_g107060' => 'hma', 'Hma1.2p1_0275F.1_g110510' => 'hma', 'Hma1.2p1_0592F.1_g185490' => 'hma', 'Hma1.2p1_0592F.1_g185500' => 'hma', 'Hma1.2p1_0592F.1_g185510' => 'hma', 'Hma1.2p1_0592F.1_g185520' => 'hma', 'Hma1.2p1_0592F.1_g185530' => 'hma', 'Hma1.2p1_0818F.1_g223450' => 'hma', 'HPP92_009708' => 'vpl', 'HPP92_009793' => 'vpl', 'HPP92_009796' => 'vpl', 'HPP92_009797' => 'vpl', 'HPP92_014940' => 'vpl', 'HPP92_014988' => 'vpl', 'Hund02463' => 'sun', 'Hund02760' => 'sun', 'Hund05071' => 'sun', 'Hund10108' => 'sun', 'Hund11204' => 'sun', 'Hund14016' => 'sun', 'Hund16464' => 'sun', 'Lalb_Chr09g0333391' => 'lal', 'Lalb_Chr11g0070461' => 'lal', 'Lalb_Chr12g0201671' => 'lal', 'Lalb_Chr13g0297161' => 'lal', 'Lj1g0002823' => 'lja', 'Lj3C1074T6' => 'lonja', 'Lj4A212T28' => 'lonja', 'Lj4g0005516' => 'lja', 'Lj4g0013705' => 'lja', 'Lj4g0027865' => 'lja', 'Lj5C92G16' => 'lonja', 'Lj5C92T12' => 'lonja', 'Lj7C596T3' => 'lonja', 'Lj9A446G59' => 'lonja', 'Lj9A482G21' => 'lonja', 'Lsat_1_v5_gn_1_28261' => 'lsa', 'Lsat_1_v5_gn_1_28281' => 'lsa', 'Lsat_1_v5_gn_1_32721' => 'lsa', 'Lsat_1_v5_gn_4_151760' => 'lsa', 'Lsat_1_v5_gn_4_2120' => 'lsa', 'Lsat_1_v5_gn_4_75761' => 'lsa', 'Lsat_1_v5_gn_5_10920' => 'lsa', 'Manes.02G099900' => 'mes', 'Manes.11G096200' => 'mes', 'Manes.12G007200' => 'mes', 'Manes.14G048300' => 'mes', 'Manes.17G114700' => 'mes', 'Mapoly0002s0070' => 'mpo', 'Mapoly0029s0099' => 'mpo', 'MBI07_g24742_MAGBIO' => 'mbi', 'MBI10_g27988_MAGBIO' => 'mbi', 'MBI11_g13057_MAGBIO' => 'mbi', 'MD02G1137200' => 'mdo', 'MD06G1137200' => 'mdo', 'MD07G1122300' => 'mdo', 'MD09G1078200' => 'mdo', 'MD13G1123700' => 'mdo', 'MD14G1151900' => 'mdo', 'MD17G1030900' => 'mdo', 'MD17G1068200' => 'mdo', 'MD17G1068600' => 'mdo', 'Medtr3g077540' => 'mtr', 'Medtr4g105530' => 'mtr', 'Medtr8g076580' => 'mtr', 'Medtr8g076590' => 'mtr', 'Medtr8g096410' => 'mtr', 'MELO3C016411.2' => 'cme', 'MELO3C017780.2' => 'cme', 'MELO3C022560.2' => 'cme', 'MELO3C026187.2' => 'cme', 'MELO3C026286.2' => 'cme', 'MELO3C032854.2' => 'cme', 'Migut.H02495' => 'egut', 'Migut.I00561' => 'egut', 'Migut.K01015' => 'egut', 'Migut.K01016' => 'egut', 'Migut.L00743' => 'egut', 'Migut.L00744' => 'egut', 'Migut.L00746' => 'egut', 'Migut.L00798' => 'egut', 'Migut.L00799' => 'egut', 'Migut.N02096' => 'egut', 'MSTRG.11259' => 'ama', 'MSTRG.23142' => 'ama', 'MSTRG.2499' => 'ama', 'Nitab4.5_0000003g0730' => 'nta', 'Nitab4.5_0000137g0020' => 'nta', 'Nitab4.5_0000721g0210' => 'nta', 'Nitab4.5_0000723g0050' => 'nta', 'Nitab4.5_0000913g0070' => 'nta', 'Nitab4.5_0001332g0040' => 'nta', 'Nitab4.5_0001771g0050' => 'nta', 'Nitab4.5_0001918g0050' => 'nta', 'Nitab4.5_0002686g0030' => 'nta', 'Nitab4.5_0003156g0020' => 'nta', 'Nitab4.5_0003383g0040' => 'nta', 'Nitab4.5_0003918g0010' => 'nta', 'Nitab4.5_0006760g0010' => 'nta', 'Nn1g05981' => 'nnu', 'Nn1g06288' => 'nnu', 'Nn3g16371' => 'nnu', 'Nn3g16786' => 'nnu', 'Nn4g22232' => 'nnu', 'Oeu005144.1' => 'oeu', 'Oeu005145.1' => 'oeu', 'Oeu011348.1' => 'oeu', 'Oeu016415.1' => 'oeu', 'Oeu023501.1' => 'oeu', 'Oeu044473.1' => 'oeu', 'Oeu048892.2' => 'oeu', 'Os01g0549200' => 'osa', 'Os02g0469300' => 'osa', 'Os04g0311100' => 'osa', 'Os06g0474900' => 'osa', 'Os10g0181700' => 'osa', 'Os11g0454800' => 'osa', 'Peaxi162Scf00037g00714' => 'pax', 'Peaxi162Scf00084g01217' => 'pax', 'Peaxi162Scf00257g00217' => 'pax', 'Peaxi162Scf00516g00215' => 'pax', 'Peaxi162Scf00689g00123' => 'pax', 'PGR044G2719' => 'pgr', 'PGR083G1360' => 'pgr', 'PGR102G2849' => 'pgr', 'PGR119G2534' => 'pgr', 'PGSC0003DMG400003538' => 'stu', 'PGSC0003DMG400028138' => 'stu', 'PGSC0003DMG400031732' => 'stu', 'PGSC0003DMG400038165' => 'stu', 'Phvul.002G284600' => 'pvu', 'Phvul.003G258200' => 'pvu', 'Phvul.009G176500' => 'pvu', 'Potri.003G167201' => 'ptr', 'Potri.005G118400' => 'ptr', 'Potri.012G089000' => 'ptr', 'Potri.012G102800' => 'ptr', 'Potri.015G079400' => 'ptr', 'Potri.015G100900' => 'ptr', 'Pp3c14_9810' => 'ppa', 'Pp3c15_10450' => 'ppa', 'Pp3c20_19150' => 'ppa', 'Pp3c23_12740' => 'ppa', 'Pp3c23_6310' => 'ppa', 'Pp3c24_3720' => 'ppa', 'Pp3c27_2580' => 'ppa', 'Pp3c9_8990' => 'ppa', 'PRCOL_00002854' => 'pco', 'Prupe.1G221200' => 'ppe', 'Prupe.3G289000' => 'ppe', 'Prupe.5G147000' => 'ppe', 'Prupe.6G157300' => 'ppe', 'Prupe.7G163400' => 'ppe', 'Psat0s2177g0040' => 'psa', 'Psat3g174760' => 'psa', 'Psat3g192160' => 'psa', 'Psat4g058520' => 'psa', 'Psat4g096840' => 'psa', 'Psat7g037320' => 'psa', 'PSO017G1274' => 'pso', 'PSO017G5166' => 'pso', 'PSO063G4558' => 'pso', 'PSO170G4458' => 'pso', 'PSO170G5005' => 'pso', 'PSO210G6156' => 'pso', 'PSO210G6635' => 'pso', 'PSO210G7397' => 'pso', 'PSO210G7700' => 'pso', 'PSO455G0035' => 'pso', 'PSO455G0180' => 'pso', 'PSO478G4515' => 'pso', 'PSO832G1305' => 'pso', 'PSO832G3489' => 'pso', 'QL02p075247' => 'qlo', 'QL03p051148' => 'qlo', 'QL05p010313' => 'qlo', 'QL06p034627' => 'qlo', 'QL10p001889' => 'qlo', 'QL10p010846' => 'qlo', 'RcHm_v2.0_Chr1g0350621' => 'rch', 'RcHm_v2.0_Chr1g0350641' => 'rch', 'RcHm_v2.0_Chr2g0092891' => 'rch', 'RcHm_v2.0_Chr2g0100251' => 'rch', 'RcHm_v2.0_Chr2g0158661' => 'rch', 'RcHm_v2.0_Chr2g0172741' => 'rch', 'RcHm_v2.0_Chr4g0429571' => 'rch', 'RcHm_v2.0_Chr5g0042471' => 'rch', 'RcHm_v2.0_Chr7g0189451' => 'rch', 'Rhsim08G0052000' => 'rsi', 'Rhsim08G0174400' => 'rsi', 'Rhsim08G0193200' => 'rsi', 'Rhsim10G0214800' => 'rsi', 'Rhsim10G0214900' => 'rsi', 'Rhsim10G0215000' => 'rsi', 'Rhsim12G0022900' => 'rsi', 'Rhsim12G0177500' => 'rsi', 'Rhsim12G0177700' => 'rsi', 'Sabra03G0122600' => 'sbr', 'Sabra05G0097400' => 'sbr', 'Sabra12G0064100' => 'sbr', 'Sabra15G0121300' => 'sbr', 'SalBow2G0642' => 'sbo', 'SalBow5G2667' => 'sbo', 'SalBow5G4873' => 'sbo', 'SalBow8G2395' => 'sbo', 'Sc03g0003290' => 'sci', 'Sc10g0010130' => 'sci', 'Sc22g0003650' => 'sci', 'Sed0001603' => 'sed', 'Sed0004259' => 'sed', 'Sed0006789' => 'sed', 'Sed0011838' => 'sed', 'Sed0012964' => 'sed', 'Sed0016383' => 'sed', 'Sed0019010' => 'sed', 'Sed0020188' => 'sed', 'SEGI_04702' => 'sgi', 'SEGI_17231' => 'sgi', 'SEGI_18877' => 'sgi', 'SEGI_25196' => 'sgi', 'SEGI_25515' => 'sgi', 'SEGI_28445' => 'sgi', 'SEGI_37452' => 'sgi', 'SGA_v2.0_scaffold188G40336' => 'sas', 'SGA_v2.0_scaffold228G43247' => 'sas', 'SGA_v2.0_scaffold280G46853' => 'sas', 'SGA_v2.0_scaffold34G13808' => 'sas', 'SGA_v2.0_scaffold40G15576' => 'sas', 'SGA_v2.0_scaffold611G53188' => 'sas', 'SGA_v2.0_scaffold78G25461' => 'sas', 'SGA_v2.0_scaffold90G27888' => 'sas', 'SHI08601' => 'shi', 'SHI08606' => 'shi', 'SHI17117' => 'shi', 'SHI17119' => 'shi', 'SMO118G0201' => 'smo', 'SMO169G0247' => 'smo', 'SMO176G0006' => 'smo', 'SMO176G0015' => 'smo', 'SMO202G0006' => 'smo', 'SMO240G0050' => 'smo', 'SMO286G0009' => 'smo', 'SMO338G0033' => 'smo', 'SMO356G0533' => 'smo', 'SMO364G0382' => 'smo', 'SMO367G0166' => 'smo', 'SMO367G1098' => 'smo', 'Solyc01g009920.3' => 'sly', 'Solyc01g099300.3' => 'sly', 'Solyc02g084700.3' => 'sly', 'Solyc03g097520.3' => 'sly', 'Solyc06g071580.3' => 'sly', 'Solyc10g081760.3' => 'sly', 'Sopen01g005480' => 'spe', 'Sopen01g042850' => 'spe', 'Sopen02g029370' => 'spe', 'Sopen03g028280' => 'spe', 'Sopen06g027870' => 'spe', 'Sopen10g032270' => 'spe', 'Sp5g18180' => 'spa', 'Sp6g12880' => 'spa', 'Sp6g30850' => 'spa', 'Sp7g22960' => 'spa', 'Sp7g34010' => 'spa', 'SpUn1326_0010' => 'spa', 'TAR371G0242' => 'tar', 'TAR622G0638' => 'tar', 'TAR628G1548' => 'tar', 'TAR629G1079' => 'tar', 'TAR629G3413' => 'tar', 'THA.LOC104804249' => 'tha', 'THA.LOC104808315' => 'tha', 'THA.LOC104809238' => 'tha', 'THA.LOC104825484' => 'tha', 'Thecc.01G025500' => 'tca', 'Thecc.03G015800' => 'tca', 'Thecc.03G018000' => 'tca', 'Thecc.03G134800' => 'tca', 'Thecc.04G014700' => 'tca', 'Thhalv10006991m.g' => 'esa', 'Thhalv10012707m.g' => 'esa', 'Thhalv10015739m.g' => 'esa', 'Thhalv10024553m.g' => 'esa', 'Thhalv10024673m.g' => 'esa', 'Thhalv10029187m.g' => 'esa', 'TPR.G12971' => 'tpr', 'TPR.G29396' => 'tpr', 'TPR.G33376' => 'tpr', 'TPR.G35508' => 'tpr', 'TPR.G35516' => 'tpr', 'TPR.G37317' => 'tpr', 'TPR.G37389' => 'tpr', 'TPR.G37523' => 'tpr', 'TPR.G559' => 'tpr', 'TWI14G0070' => 'twi', 'TWI14G0729' => 'twi', 'TWI18G0596' => 'twi', 'TWI39G0780' => 'twi', 'TWI39G0850' => 'twi', 'TWI73G1052' => 'twi', 'unitig_52.g17485' => 'ugi', 'unitig_61.g26355' => 'ugi', 'vmacro01040' => 'vma', 'vmacro16731' => 'vma', 'vmacro18270' => 'vma', 'vmacro19142' => 'vma', 'vmacro19407' => 'vma', 'vmacro19408' => 'vma', 'vmacro21899' => 'vma', 'vmacro21900' => 'vma', 'vmacro21901' => 'vma', 'VMungo0251G0490' => 'vmu', 'VMungo0251G1748' => 'vmu', 'VMungo1309G0421' => 'vmu', 'Zm00001eb086500' => 'zma', 'Zm00001eb150680' => 'zma', 'Zm00001eb162330' => 'zma', 'Zm00001eb203130' => 'zma', 'Zm00001eb369480' => 'zma', 'Zm00001eb382340' => 'zma', 'Zm00001eb416360' => 'zma' ) $gf_id = 'HOM05D000902' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000902' ) $data_identifier = 'HOM05D000902' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 13, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 10, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 6, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 9, 'hma' => (int) 12, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 4, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 6, 'ppa' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 6, 'rch' => (int) 9, 'rsi' => (int) 9, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 12, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 3, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416360' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000902', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '663', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02470' => 'bna', 'A01p16260' => 'bna', 'A02p01680' => 'bna', 'A03p16600' => 'bna', 'A03p55660' => 'bna', 'A03p64160' => 'bna', 'A03p64170' => 'bna', 'A08p31900' => 'bna', 'A09p59530' => 'bna', 'A10p08230' => 'bna', 'A10p25090' => 'bna', 'Aa31LG3G7100' => 'aar', 'Aa31LG3G7110' => 'aar', 'Aa31LG6G13160' => 'aar', 'Aa31LG7G10770' => 'aar', 'Aa31LG7G3830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2723' => 'aag', 'Actinidia08045' => 'ach', 'Actinidia08888' => 'ach', 'Actinidia18333' => 'ach', 'Actinidia19334' => 'ach', 'Actinidia25552' => 'ach', 'Actinidia26089' => 'ach', 'Actinidia30615' => 'ach', 'Actinidia30616' => 'ach', 'Actinidia33083' => 'ach', 'Actinidia35762' => 'ach', 'Ah.02g110620' => 'amhyb', 'Ah.11g046390' => 'amhyb', 'AL1G31670' => 'aly', 'AL6G23730' => 'aly', 'AL7G14740' => 'aly', 'AL7G14750' => 'aly', 'AL7G14760' => 'aly', 'AL7G28220' => 'aly', 'AL8G24940' => 'aly', 'Aqoxy3G01665' => 'aox', 'Aqoxy3G02853' => 'aox', 'Aqoxy5G01513' => 'aox', 'Aqoxy5G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8SKA4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ75LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKDA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0LJZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7REX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZP4YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWX7I5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2QKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS0L9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPCD8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q161UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC7XCF' => 'arhy', 'AT1G19100' => 'ath', 'AT4G24970' => 'ath', 'AT4G36270' => 'ath', 'AT4G36280' => 'ath', 'AT4G36290' => 'ath', 'AT5G13130' => 'ath', 'AT5G50780' => 'ath', 'ATR0582G266' => 'atr', 'ATR0661G195' => 'atr', 'ATR1152G031' => 'atr', 'Atru.chr11.2382' => 'acertr', 'Atru.chr12.2337' => 'acertr', 'Atru.chr3.744' => 'acertr', 'Atru.chr6.1870' => 'acertr', 'Atru.chr9.2515' => 'acertr', 'AUR62004120' => 'cqu', 'AUR62005667' => 'cqu', 'AUR62007634' => 'cqu', 'AUR62008186' => 'cqu', 'AUR62008187' => 'cqu', 'AUR62008188' => 'cqu', 'AUR62027954' => 'cqu', 'AUR62028766' => 'cqu', 'AUR62028767' => 'cqu', 'AUR62028768' => 'cqu', 'AUR62028886' => 'cqu', 'AUR62029563' => 'cqu', 'AUR62038832' => 'cqu', 'BcaB01g04149' => 'bca', 'BcaB03g12940' => 'bca', 'BcaB03g13090' => 'bca', 'BcaB03g14466' => 'bca', 'BcaB05g24035' => 'bca', 'BcaC01g06050' => 'bca', 'BcaC04g19148' => 'bca', 'BcaC04g20761' => 'bca', 'BcaC06g32845' => 'bca', 'BcaC07g41274' => 'bca', 'BcaC09g50827' => 'bca', 'BcaNung00741' => 'bca', 'BcaNung00742' => 'bca', 'BcaNung01859' => 'bca', 'BcaNung03985' => 'bca', 'BcaNung03989' => 'bca', 'BcaNung05661' => 'bca', 'BolC1t00257H' => 'bol', 'BolC1t01956H' => 'bol', 'BolC2t06534H' => 'bol', 'BolC3t14334H' => 'bol', 'BolC5t30451H' => 'bol', 'BolC7t45880H' => 'bol', 'BolC7t46586H' => 'bol', 'BolC8t49301H' => 'bol', 'BolC8t51837H' => 'bol', 'BolC9t56822H' => 'bol', 'BolC9t59235H' => 'bol', 'BraA01t00234Z' => 'bra', 'BraA01t01563Z' => 'bra', 'BraA02t05147Z' => 'bra', 'BraA03t10947Z' => 'bra', 'BraA03t14633Z' => 'bra', 'BraA08t35112Z' => 'bra', 'BraA09t41330Z' => 'bra', 'BraA10t44570Z' => 'bra', 'C01p02670' => 'bna', 'C01p20260' => 'bna', 'C02p05890' => 'bna', 'C03p19530' => 'bna', 'C05p17470' => 'bna', 'C07p53900' => 'bna', 'C07p61630' => 'bna', 'C08p16800' => 'bna', 'C08p42810' => 'bna', 'C09p39480' => 'bna', 'C09p63980' => 'bna', 'CAN.G1001.7' => 'can', 'CAN.G1034.55' => 'can', 'CAN.G143.7' => 'can', 'CAN.G3340.1' => 'can', 'CAN.G358.19' => 'can', 'CAN.G373.2' => 'can', 'CAN.G674.16' => 'can', 'CAN.G674.17' => 'can', 'CAN.G674.18' => 'can', 'CAN.G732.2' => 'can', 'CAN.G732.3' => 'can', 'CAN.G993.39' => 'can', 'CANSAT01G2052' => 'cansat', 'CANSAT80G0070' => 'cansat', 'CANSAT80G0483' => 'cansat', 'CANSAT80G0625' => 'cansat', 'CARHR019690' => 'chi', 'CARHR080280' => 'chi', 'CARHR152750' => 'chi', 'CARHR152760' => 'chi', 'CARHR152770' => 'chi', 'CARHR200340' => 'chi', 'CARHR232370' => 'chi', 'CARHR244670' => 'chi', 'CARHR244680' => 'chi', 'CARHR257520' => 'chi', 'Carub.0001s1872' => 'cru', 'Carub.0006s1130' => 'cru', 'Carub.0007s0396' => 'cru', 'Carub.0007s0397' => 'cru', 'Carub.0007s1608' => 'cru', 'Carub.0008s1068' => 'cru', 'Carub.0008s1077' => 'cru', 'Ca_16158_v3' => 'car', 'Ca_17571_v3' => 'car', 'Ca_21936_v3' => 'car', 'Ca_22350_v3' => 'car', 'CBR_g22445' => 'cbr', 'CBR_g26290' => 'cbr', 'Cc04_g09610' => 'ccan', 'Cc04_g12280' => 'ccan', 'Cc07_g10230' => 'ccan', 'CDE02G0093' => 'cde', 'CDE02G0701' => 'cde', 'CDE04G1050' => 'cde', 'CDE05G1833' => 'cde', 'CDE05G3058' => 'cde', 'CDE05G3380' => 'cde', 'CDE06G0536' => 'cde', 'Cfa006923' => 'cfa', 'Cfa009402' => 'cfa', 'Cfa018751' => 'cfa', 'Cfa019164' => 'cfa', 'Cfa022935' => 'cfa', 'Ciclev10019081m.g' => 'ccl', 'Ciclev10025076m.g' => 'ccl', 'Ciclev10030712m.g' => 'ccl', 'Ciclev10033760m.g' => 'ccl', 'CiPaw.05G105600' => 'cil', 'CiPaw.08G136700' => 'cil', 'CiPaw.11G003900' => 'cil', 'CiPaw.11G023700' => 'cil', 'CiPaw.12G003700' => 'cil', 'ClCG06G017100' => 'cla', 'ClCG06G018110' => 'cla', 'ClCG07G008800' => 'cla', 'ClCG07G015330' => 'cla', 'COL.COLO4_13698' => 'col', 'COL.COLO4_16659' => 'col', 'COL.COLO4_21986' => 'col', 'COL.COLO4_24049' => 'col', 'COL.COLO4_29061' => 'col', 'COL.COLO4_29075' => 'col', 'COL.COLO4_30094' => 'col', 'Cpa.g.c33689' => 'cpa', 'Cpa.g.sc108.39' => 'cpa', 'Cpa.g.sc108.41' => 'cpa', 'Cpa.g.sc1163.1' => 'cpa', 'Cpa.g.sc4.155' => 'cpa', 'Cpa.g.sc6.194' => 'cpa', 'CsaV3_1G000340' => 'csa', 'CsaV3_1G001400' => 'csa', 'CsaV3_4G002220' => 'csa', 'CsaV3_4G005370' => 'csa', 'CSS0007487' => 'camsi', 'CSS0008066' => 'camsi', 'CSS0009120' => 'camsi', 'CSS0015512' => 'camsi', 'CSS0022409' => 'camsi', 'CSS0025358' => 'camsi', 'CSS0044547' => 'camsi', 'DCAR_013057' => 'dca', 'DCAR_015058' => 'dca', 'DCAR_016027' => 'dca', 'DCAR_017327' => 'dca', 'DCAR_020743' => 'dca', 'DCAR_026157' => 'dca', 'DCAR_032339' => 'dca', 'DCAR_032340' => 'dca', 'Dinv11200' => 'din', 'Dinv11201' => 'din', 'Dinv20631' => 'din', 'Dinv23182' => 'din', 'Dinv33466' => 'din', 'Dinv33583' => 'din', 'Dinv38565' => 'din', 'Duzib068G0200' => 'dzi', 'Duzib147G0132' => 'dzi', 'Duzib147G0635' => 'dzi', 'Duzib205G1670' => 'dzi', 'Duzib251G0606' => 'dzi', 'ECA232G3336' => 'eca', 'ECA232G3763' => 'eca', 'ECA232G4845' => 'eca', 'ECA234G1607' => 'eca', 'ECA246G0932' => 'eca', 'ECA247G0781' => 'eca', 'ECA247G1932' => 'eca', 'ECA247G2079' => 'eca', 'ECA247G3338' => 'eca', 'ECA247G4115' => 'eca', 'EL10Ac3g06552' => 'bvu', 'EL10Ac5g10721' => 'bvu', 'EL10Ac5g10722' => 'bvu', 'EL10Ac5g10723' => 'bvu', 'EL10Ac5g11361' => 'bvu', 'EL10Ac6g13553' => 'bvu', 'EL10As8g23872' => 'bvu', 'Eucgr.B00250' => 'egr', 'Eucgr.B00251' => 'egr', 'Eucgr.B03533' => 'egr', 'Eucgr.I02381' => 'egr', 'Eucgr.K02700' => 'egr', 'FAN02G0174' => 'fan', 'FAN02G3146' => 'fan', 'FAN04G1672' => 'fan', 'FAN04G2273' => 'fan', 'FAN05G2791' => 'fan', 'FAN05G4035' => 'fan', 'FAN07G0834' => 'fan', 'FAN08G1198' => 'fan', 'FAN09G4182' => 'fan', 'FAN12G0496' => 'fan', 'FAN13G1027' => 'fan', 'FAN13G2951' => 'fan', 'FAN14G0705' => 'fan', 'FAN14G0720' => 'fan', 'FAN17G0201' => 'fan', 'FAN17G2665' => 'fan', 'FAN18G1456' => 'fan', 'FAN18G1525' => 'fan', 'FAN18G3500' => 'fan', 'FAN28G2670' => 'fan', 'FvH4_1g12391' => 'fve', 'FvH4_4g23220' => 'fve', 'FvH4_5g08810' => 'fve', 'FvH4_5g28960' => 'fve', 'FvH4_6g42820' => 'fve', 'FvH4_6g51110' => 'fve', 'Glyma.02G051802' => 'gma', 'Glyma.04G185300' => 'gma', 'Glyma.05G202900' => 'gma', 'Glyma.08G010300' => 'gma', 'Glyma.16G131900' => 'gma', 'Glyma.17G087900' => 'gma', 'Gohir.A07G048600' => 'ghi', 'Gohir.A11G179000' => 'ghi', 'Gohir.A12G140900' => 'ghi', 'Gohir.A12G140950' => 'ghi', 'Gohir.A12G191700' => 'ghi', 'Gohir.A13G086300' => 'ghi', 'Gohir.D07G052900' => 'ghi', 'Gohir.D11G186600' => 'ghi', 'Gohir.D12G145575' => 'ghi', 'Gohir.D12G145650' => 'ghi', 'Gohir.D12G145725' => 'ghi', 'Gohir.D12G194050' => 'ghi', 'Gohir.D13G091800' => 'ghi', 'Gorai.001G055900' => 'gra', 'Gorai.007G198400' => 'gra', 'Gorai.008G157000' => 'gra', 'Gorai.008G157100' => 'gra', 'Gorai.008G208700' => 'gra', 'Gorai.010G138700' => 'gra', 'GSVIVG01000977001' => 'vvi', 'GSVIVG01007708001' => 'vvi', 'GSVIVG01008587001' => 'vvi', 'GSVIVG01018849001' => 'vvi', 'GSVIVG01032432001' => 'vvi', 'HanXRQChr02g0034131' => 'han', 'HanXRQChr02g0035981' => 'han', 'HanXRQChr02g0035991' => 'han', 'HanXRQChr05g0155611' => 'han', 'HanXRQChr05g0155621' => 'han', 'HanXRQChr08g0236501' => 'han', 'HanXRQChr09g0261321' => 'han', 'HanXRQChr09g0272081' => 'han', 'HanXRQChr10g0310741' => 'han', 'HanXRQChr11g0325591' => 'han', 'HanXRQChr12g0385691' => 'han', 'HanXRQChr13g0387801' => 'han', 'HanXRQChr15g0463011' => 'han', 'Haze_03826' => 'cav', 'Haze_03827' => 'cav', 'Haze_07183' => 'cav', 'Haze_07537' => 'cav', 'Haze_07539' => 'cav', 'Haze_12461' => 'cav', 'Haze_16115' => 'cav', 'Haze_16808' => 'cav', 'Haze_18531' => 'cav', 'Hma1.2p1_0046F.1_g026700' => 'hma', 'Hma1.2p1_0046F.1_g026710' => 'hma', 'Hma1.2p1_0168F.1_g074340' => 'hma', 'Hma1.2p1_0266F.1_g107030' => 'hma', 'Hma1.2p1_0266F.1_g107060' => 'hma', 'Hma1.2p1_0275F.1_g110510' => 'hma', 'Hma1.2p1_0592F.1_g185490' => 'hma', 'Hma1.2p1_0592F.1_g185500' => 'hma', 'Hma1.2p1_0592F.1_g185510' => 'hma', 'Hma1.2p1_0592F.1_g185520' => 'hma', 'Hma1.2p1_0592F.1_g185530' => 'hma', 'Hma1.2p1_0818F.1_g223450' => 'hma', 'HPP92_009708' => 'vpl', 'HPP92_009793' => 'vpl', 'HPP92_009796' => 'vpl', 'HPP92_009797' => 'vpl', 'HPP92_014940' => 'vpl', 'HPP92_014988' => 'vpl', 'Hund02463' => 'sun', 'Hund02760' => 'sun', 'Hund05071' => 'sun', 'Hund10108' => 'sun', 'Hund11204' => 'sun', 'Hund14016' => 'sun', 'Hund16464' => 'sun', 'Lalb_Chr09g0333391' => 'lal', 'Lalb_Chr11g0070461' => 'lal', 'Lalb_Chr12g0201671' => 'lal', 'Lalb_Chr13g0297161' => 'lal', 'Lj1g0002823' => 'lja', 'Lj3C1074T6' => 'lonja', 'Lj4A212T28' => 'lonja', 'Lj4g0005516' => 'lja', 'Lj4g0013705' => 'lja', 'Lj4g0027865' => 'lja', 'Lj5C92G16' => 'lonja', 'Lj5C92T12' => 'lonja', 'Lj7C596T3' => 'lonja', 'Lj9A446G59' => 'lonja', 'Lj9A482G21' => 'lonja', 'Lsat_1_v5_gn_1_28261' => 'lsa', 'Lsat_1_v5_gn_1_28281' => 'lsa', 'Lsat_1_v5_gn_1_32721' => 'lsa', 'Lsat_1_v5_gn_4_151760' => 'lsa', 'Lsat_1_v5_gn_4_2120' => 'lsa', 'Lsat_1_v5_gn_4_75761' => 'lsa', 'Lsat_1_v5_gn_5_10920' => 'lsa', 'Manes.02G099900' => 'mes', 'Manes.11G096200' => 'mes', 'Manes.12G007200' => 'mes', 'Manes.14G048300' => 'mes', 'Manes.17G114700' => 'mes', 'Mapoly0002s0070' => 'mpo', 'Mapoly0029s0099' => 'mpo', 'MBI07_g24742_MAGBIO' => 'mbi', 'MBI10_g27988_MAGBIO' => 'mbi', 'MBI11_g13057_MAGBIO' => 'mbi', 'MD02G1137200' => 'mdo', 'MD06G1137200' => 'mdo', 'MD07G1122300' => 'mdo', 'MD09G1078200' => 'mdo', 'MD13G1123700' => 'mdo', 'MD14G1151900' => 'mdo', 'MD17G1030900' => 'mdo', 'MD17G1068200' => 'mdo', 'MD17G1068600' => 'mdo', 'Medtr3g077540' => 'mtr', 'Medtr4g105530' => 'mtr', 'Medtr8g076580' => 'mtr', 'Medtr8g076590' => 'mtr', 'Medtr8g096410' => 'mtr', 'MELO3C016411.2' => 'cme', 'MELO3C017780.2' => 'cme', 'MELO3C022560.2' => 'cme', 'MELO3C026187.2' => 'cme', 'MELO3C026286.2' => 'cme', 'MELO3C032854.2' => 'cme', 'Migut.H02495' => 'egut', 'Migut.I00561' => 'egut', 'Migut.K01015' => 'egut', 'Migut.K01016' => 'egut', 'Migut.L00743' => 'egut', 'Migut.L00744' => 'egut', 'Migut.L00746' => 'egut', 'Migut.L00798' => 'egut', 'Migut.L00799' => 'egut', 'Migut.N02096' => 'egut', 'MSTRG.11259' => 'ama', 'MSTRG.23142' => 'ama', 'MSTRG.2499' => 'ama', 'Nitab4.5_0000003g0730' => 'nta', 'Nitab4.5_0000137g0020' => 'nta', 'Nitab4.5_0000721g0210' => 'nta', 'Nitab4.5_0000723g0050' => 'nta', 'Nitab4.5_0000913g0070' => 'nta', 'Nitab4.5_0001332g0040' => 'nta', 'Nitab4.5_0001771g0050' => 'nta', 'Nitab4.5_0001918g0050' => 'nta', 'Nitab4.5_0002686g0030' => 'nta', 'Nitab4.5_0003156g0020' => 'nta', 'Nitab4.5_0003383g0040' => 'nta', 'Nitab4.5_0003918g0010' => 'nta', 'Nitab4.5_0006760g0010' => 'nta', 'Nn1g05981' => 'nnu', 'Nn1g06288' => 'nnu', 'Nn3g16371' => 'nnu', 'Nn3g16786' => 'nnu', 'Nn4g22232' => 'nnu', 'Oeu005144.1' => 'oeu', 'Oeu005145.1' => 'oeu', 'Oeu011348.1' => 'oeu', 'Oeu016415.1' => 'oeu', 'Oeu023501.1' => 'oeu', 'Oeu044473.1' => 'oeu', 'Oeu048892.2' => 'oeu', 'Os01g0549200' => 'osa', 'Os02g0469300' => 'osa', 'Os04g0311100' => 'osa', 'Os06g0474900' => 'osa', 'Os10g0181700' => 'osa', 'Os11g0454800' => 'osa', 'Peaxi162Scf00037g00714' => 'pax', 'Peaxi162Scf00084g01217' => 'pax', 'Peaxi162Scf00257g00217' => 'pax', 'Peaxi162Scf00516g00215' => 'pax', 'Peaxi162Scf00689g00123' => 'pax', 'PGR044G2719' => 'pgr', 'PGR083G1360' => 'pgr', 'PGR102G2849' => 'pgr', 'PGR119G2534' => 'pgr', 'PGSC0003DMG400003538' => 'stu', 'PGSC0003DMG400028138' => 'stu', 'PGSC0003DMG400031732' => 'stu', 'PGSC0003DMG400038165' => 'stu', 'Phvul.002G284600' => 'pvu', 'Phvul.003G258200' => 'pvu', 'Phvul.009G176500' => 'pvu', 'Potri.003G167201' => 'ptr', 'Potri.005G118400' => 'ptr', 'Potri.012G089000' => 'ptr', 'Potri.012G102800' => 'ptr', 'Potri.015G079400' => 'ptr', 'Potri.015G100900' => 'ptr', 'Pp3c14_9810' => 'ppa', 'Pp3c15_10450' => 'ppa', 'Pp3c20_19150' => 'ppa', 'Pp3c23_12740' => 'ppa', 'Pp3c23_6310' => 'ppa', 'Pp3c24_3720' => 'ppa', 'Pp3c27_2580' => 'ppa', 'Pp3c9_8990' => 'ppa', 'PRCOL_00002854' => 'pco', 'Prupe.1G221200' => 'ppe', 'Prupe.3G289000' => 'ppe', 'Prupe.5G147000' => 'ppe', 'Prupe.6G157300' => 'ppe', 'Prupe.7G163400' => 'ppe', 'Psat0s2177g0040' => 'psa', 'Psat3g174760' => 'psa', 'Psat3g192160' => 'psa', 'Psat4g058520' => 'psa', 'Psat4g096840' => 'psa', 'Psat7g037320' => 'psa', 'PSO017G1274' => 'pso', 'PSO017G5166' => 'pso', 'PSO063G4558' => 'pso', 'PSO170G4458' => 'pso', 'PSO170G5005' => 'pso', 'PSO210G6156' => 'pso', 'PSO210G6635' => 'pso', 'PSO210G7397' => 'pso', 'PSO210G7700' => 'pso', 'PSO455G0035' => 'pso', 'PSO455G0180' => 'pso', 'PSO478G4515' => 'pso', 'PSO832G1305' => 'pso', 'PSO832G3489' => 'pso', 'QL02p075247' => 'qlo', 'QL03p051148' => 'qlo', 'QL05p010313' => 'qlo', 'QL06p034627' => 'qlo', 'QL10p001889' => 'qlo', 'QL10p010846' => 'qlo', 'RcHm_v2.0_Chr1g0350621' => 'rch', 'RcHm_v2.0_Chr1g0350641' => 'rch', 'RcHm_v2.0_Chr2g0092891' => 'rch', 'RcHm_v2.0_Chr2g0100251' => 'rch', 'RcHm_v2.0_Chr2g0158661' => 'rch', 'RcHm_v2.0_Chr2g0172741' => 'rch', 'RcHm_v2.0_Chr4g0429571' => 'rch', 'RcHm_v2.0_Chr5g0042471' => 'rch', 'RcHm_v2.0_Chr7g0189451' => 'rch', 'Rhsim08G0052000' => 'rsi', 'Rhsim08G0174400' => 'rsi', 'Rhsim08G0193200' => 'rsi', 'Rhsim10G0214800' => 'rsi', 'Rhsim10G0214900' => 'rsi', 'Rhsim10G0215000' => 'rsi', 'Rhsim12G0022900' => 'rsi', 'Rhsim12G0177500' => 'rsi', 'Rhsim12G0177700' => 'rsi', 'Sabra03G0122600' => 'sbr', 'Sabra05G0097400' => 'sbr', 'Sabra12G0064100' => 'sbr', 'Sabra15G0121300' => 'sbr', 'SalBow2G0642' => 'sbo', 'SalBow5G2667' => 'sbo', 'SalBow5G4873' => 'sbo', 'SalBow8G2395' => 'sbo', 'Sc03g0003290' => 'sci', 'Sc10g0010130' => 'sci', 'Sc22g0003650' => 'sci', 'Sed0001603' => 'sed', 'Sed0004259' => 'sed', 'Sed0006789' => 'sed', 'Sed0011838' => 'sed', 'Sed0012964' => 'sed', 'Sed0016383' => 'sed', 'Sed0019010' => 'sed', 'Sed0020188' => 'sed', 'SEGI_04702' => 'sgi', 'SEGI_17231' => 'sgi', 'SEGI_18877' => 'sgi', 'SEGI_25196' => 'sgi', 'SEGI_25515' => 'sgi', 'SEGI_28445' => 'sgi', 'SEGI_37452' => 'sgi', 'SGA_v2.0_scaffold188G40336' => 'sas', 'SGA_v2.0_scaffold228G43247' => 'sas', 'SGA_v2.0_scaffold280G46853' => 'sas', 'SGA_v2.0_scaffold34G13808' => 'sas', 'SGA_v2.0_scaffold40G15576' => 'sas', 'SGA_v2.0_scaffold611G53188' => 'sas', 'SGA_v2.0_scaffold78G25461' => 'sas', 'SGA_v2.0_scaffold90G27888' => 'sas', 'SHI08601' => 'shi', 'SHI08606' => 'shi', 'SHI17117' => 'shi', 'SHI17119' => 'shi', 'SMO118G0201' => 'smo', 'SMO169G0247' => 'smo', 'SMO176G0006' => 'smo', 'SMO176G0015' => 'smo', 'SMO202G0006' => 'smo', 'SMO240G0050' => 'smo', 'SMO286G0009' => 'smo', 'SMO338G0033' => 'smo', 'SMO356G0533' => 'smo', 'SMO364G0382' => 'smo', 'SMO367G0166' => 'smo', 'SMO367G1098' => 'smo', 'Solyc01g009920.3' => 'sly', 'Solyc01g099300.3' => 'sly', 'Solyc02g084700.3' => 'sly', 'Solyc03g097520.3' => 'sly', 'Solyc06g071580.3' => 'sly', 'Solyc10g081760.3' => 'sly', 'Sopen01g005480' => 'spe', 'Sopen01g042850' => 'spe', 'Sopen02g029370' => 'spe', 'Sopen03g028280' => 'spe', 'Sopen06g027870' => 'spe', 'Sopen10g032270' => 'spe', 'Sp5g18180' => 'spa', 'Sp6g12880' => 'spa', 'Sp6g30850' => 'spa', 'Sp7g22960' => 'spa', 'Sp7g34010' => 'spa', 'SpUn1326_0010' => 'spa', 'TAR371G0242' => 'tar', 'TAR622G0638' => 'tar', 'TAR628G1548' => 'tar', 'TAR629G1079' => 'tar', 'TAR629G3413' => 'tar', 'THA.LOC104804249' => 'tha', 'THA.LOC104808315' => 'tha', 'THA.LOC104809238' => 'tha', 'THA.LOC104825484' => 'tha', 'Thecc.01G025500' => 'tca', 'Thecc.03G015800' => 'tca', 'Thecc.03G018000' => 'tca', 'Thecc.03G134800' => 'tca', 'Thecc.04G014700' => 'tca', 'Thhalv10006991m.g' => 'esa', 'Thhalv10012707m.g' => 'esa', 'Thhalv10015739m.g' => 'esa', 'Thhalv10024553m.g' => 'esa', 'Thhalv10024673m.g' => 'esa', 'Thhalv10029187m.g' => 'esa', 'TPR.G12971' => 'tpr', 'TPR.G29396' => 'tpr', 'TPR.G33376' => 'tpr', 'TPR.G35508' => 'tpr', 'TPR.G35516' => 'tpr', 'TPR.G37317' => 'tpr', 'TPR.G37389' => 'tpr', 'TPR.G37523' => 'tpr', 'TPR.G559' => 'tpr', 'TWI14G0070' => 'twi', 'TWI14G0729' => 'twi', 'TWI18G0596' => 'twi', 'TWI39G0780' => 'twi', 'TWI39G0850' => 'twi', 'TWI73G1052' => 'twi', 'unitig_52.g17485' => 'ugi', 'unitig_61.g26355' => 'ugi', 'vmacro01040' => 'vma', 'vmacro16731' => 'vma', 'vmacro18270' => 'vma', 'vmacro19142' => 'vma', 'vmacro19407' => 'vma', 'vmacro19408' => 'vma', 'vmacro21899' => 'vma', 'vmacro21900' => 'vma', 'vmacro21901' => 'vma', 'VMungo0251G0490' => 'vmu', 'VMungo0251G1748' => 'vmu', 'VMungo1309G0421' => 'vmu', 'Zm00001eb086500' => 'zma', 'Zm00001eb150680' => 'zma', 'Zm00001eb162330' => 'zma', 'Zm00001eb203130' => 'zma', 'Zm00001eb369480' => 'zma', 'Zm00001eb382340' => 'zma', 'Zm00001eb416360' => 'zma' ), 'gf_id' => 'HOM05D000902', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000902' ), 'data_identifier' => 'HOM05D000902', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000902', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '663', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02470' => 'bna', 'A01p16260' => 'bna', 'A02p01680' => 'bna', 'A03p16600' => 'bna', 'A03p55660' => 'bna', 'A03p64160' => 'bna', 'A03p64170' => 'bna', 'A08p31900' => 'bna', 'A09p59530' => 'bna', 'A10p08230' => 'bna', 'A10p25090' => 'bna', 'Aa31LG3G7100' => 'aar', 'Aa31LG3G7110' => 'aar', 'Aa31LG6G13160' => 'aar', 'Aa31LG7G10770' => 'aar', 'Aa31LG7G3830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2723' => 'aag', 'Actinidia08045' => 'ach', 'Actinidia08888' => 'ach', 'Actinidia18333' => 'ach', 'Actinidia19334' => 'ach', 'Actinidia25552' => 'ach', 'Actinidia26089' => 'ach', 'Actinidia30615' => 'ach', 'Actinidia30616' => 'ach', 'Actinidia33083' => 'ach', 'Actinidia35762' => 'ach', 'Ah.02g110620' => 'amhyb', 'Ah.11g046390' => 'amhyb', 'AL1G31670' => 'aly', 'AL6G23730' => 'aly', 'AL7G14740' => 'aly', 'AL7G14750' => 'aly', 'AL7G14760' => 'aly', 'AL7G28220' => 'aly', 'AL8G24940' => 'aly', 'Aqoxy3G01665' => 'aox', 'Aqoxy3G02853' => 'aox', 'Aqoxy5G01513' => 'aox', 'Aqoxy5G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8SKA4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ75LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKDA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0LJZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7REX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZP4YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWX7I5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2QKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS0L9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPCD8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q161UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC7XCF' => 'arhy', 'AT1G19100' => 'ath', 'AT4G24970' => 'ath', 'AT4G36270' => 'ath', 'AT4G36280' => 'ath', 'AT4G36290' => 'ath', 'AT5G13130' => 'ath', 'AT5G50780' => 'ath', 'ATR0582G266' => 'atr', 'ATR0661G195' => 'atr', 'ATR1152G031' => 'atr', 'Atru.chr11.2382' => 'acertr', 'Atru.chr12.2337' => 'acertr', 'Atru.chr3.744' => 'acertr', 'Atru.chr6.1870' => 'acertr', 'Atru.chr9.2515' => 'acertr', 'AUR62004120' => 'cqu', 'AUR62005667' => 'cqu', 'AUR62007634' => 'cqu', 'AUR62008186' => 'cqu', 'AUR62008187' => 'cqu', 'AUR62008188' => 'cqu', 'AUR62027954' => 'cqu', 'AUR62028766' => 'cqu', 'AUR62028767' => 'cqu', 'AUR62028768' => 'cqu', 'AUR62028886' => 'cqu', 'AUR62029563' => 'cqu', 'AUR62038832' => 'cqu', 'BcaB01g04149' => 'bca', 'BcaB03g12940' => 'bca', 'BcaB03g13090' => 'bca', 'BcaB03g14466' => 'bca', 'BcaB05g24035' => 'bca', 'BcaC01g06050' => 'bca', 'BcaC04g19148' => 'bca', 'BcaC04g20761' => 'bca', 'BcaC06g32845' => 'bca', 'BcaC07g41274' => 'bca', 'BcaC09g50827' => 'bca', 'BcaNung00741' => 'bca', 'BcaNung00742' => 'bca', 'BcaNung01859' => 'bca', 'BcaNung03985' => 'bca', 'BcaNung03989' => 'bca', 'BcaNung05661' => 'bca', 'BolC1t00257H' => 'bol', 'BolC1t01956H' => 'bol', 'BolC2t06534H' => 'bol', 'BolC3t14334H' => 'bol', 'BolC5t30451H' => 'bol', 'BolC7t45880H' => 'bol', 'BolC7t46586H' => 'bol', 'BolC8t49301H' => 'bol', 'BolC8t51837H' => 'bol', 'BolC9t56822H' => 'bol', 'BolC9t59235H' => 'bol', 'BraA01t00234Z' => 'bra', 'BraA01t01563Z' => 'bra', 'BraA02t05147Z' => 'bra', 'BraA03t10947Z' => 'bra', 'BraA03t14633Z' => 'bra', 'BraA08t35112Z' => 'bra', 'BraA09t41330Z' => 'bra', 'BraA10t44570Z' => 'bra', 'C01p02670' => 'bna', 'C01p20260' => 'bna', 'C02p05890' => 'bna', 'C03p19530' => 'bna', 'C05p17470' => 'bna', 'C07p53900' => 'bna', 'C07p61630' => 'bna', 'C08p16800' => 'bna', 'C08p42810' => 'bna', 'C09p39480' => 'bna', 'C09p63980' => 'bna', 'CAN.G1001.7' => 'can', 'CAN.G1034.55' => 'can', 'CAN.G143.7' => 'can', 'CAN.G3340.1' => 'can', 'CAN.G358.19' => 'can', 'CAN.G373.2' => 'can', 'CAN.G674.16' => 'can', 'CAN.G674.17' => 'can', 'CAN.G674.18' => 'can', 'CAN.G732.2' => 'can', 'CAN.G732.3' => 'can', 'CAN.G993.39' => 'can', 'CANSAT01G2052' => 'cansat', 'CANSAT80G0070' => 'cansat', 'CANSAT80G0483' => 'cansat', 'CANSAT80G0625' => 'cansat', 'CARHR019690' => 'chi', 'CARHR080280' => 'chi', 'CARHR152750' => 'chi', 'CARHR152760' => 'chi', 'CARHR152770' => 'chi', 'CARHR200340' => 'chi', 'CARHR232370' => 'chi', 'CARHR244670' => 'chi', 'CARHR244680' => 'chi', 'CARHR257520' => 'chi', 'Carub.0001s1872' => 'cru', 'Carub.0006s1130' => 'cru', 'Carub.0007s0396' => 'cru', 'Carub.0007s0397' => 'cru', 'Carub.0007s1608' => 'cru', 'Carub.0008s1068' => 'cru', 'Carub.0008s1077' => 'cru', 'Ca_16158_v3' => 'car', 'Ca_17571_v3' => 'car', 'Ca_21936_v3' => 'car', 'Ca_22350_v3' => 'car', 'CBR_g22445' => 'cbr', 'CBR_g26290' => 'cbr', 'Cc04_g09610' => 'ccan', 'Cc04_g12280' => 'ccan', 'Cc07_g10230' => 'ccan', 'CDE02G0093' => 'cde', 'CDE02G0701' => 'cde', 'CDE04G1050' => 'cde', 'CDE05G1833' => 'cde', 'CDE05G3058' => 'cde', 'CDE05G3380' => 'cde', 'CDE06G0536' => 'cde', 'Cfa006923' => 'cfa', 'Cfa009402' => 'cfa', 'Cfa018751' => 'cfa', 'Cfa019164' => 'cfa', 'Cfa022935' => 'cfa', 'Ciclev10019081m.g' => 'ccl', 'Ciclev10025076m.g' => 'ccl', 'Ciclev10030712m.g' => 'ccl', 'Ciclev10033760m.g' => 'ccl', 'CiPaw.05G105600' => 'cil', 'CiPaw.08G136700' => 'cil', 'CiPaw.11G003900' => 'cil', 'CiPaw.11G023700' => 'cil', 'CiPaw.12G003700' => 'cil', 'ClCG06G017100' => 'cla', 'ClCG06G018110' => 'cla', 'ClCG07G008800' => 'cla', 'ClCG07G015330' => 'cla', 'COL.COLO4_13698' => 'col', 'COL.COLO4_16659' => 'col', 'COL.COLO4_21986' => 'col', 'COL.COLO4_24049' => 'col', 'COL.COLO4_29061' => 'col', 'COL.COLO4_29075' => 'col', 'COL.COLO4_30094' => 'col', 'Cpa.g.c33689' => 'cpa', 'Cpa.g.sc108.39' => 'cpa', 'Cpa.g.sc108.41' => 'cpa', 'Cpa.g.sc1163.1' => 'cpa', 'Cpa.g.sc4.155' => 'cpa', 'Cpa.g.sc6.194' => 'cpa', 'CsaV3_1G000340' => 'csa', 'CsaV3_1G001400' => 'csa', 'CsaV3_4G002220' => 'csa', 'CsaV3_4G005370' => 'csa', 'CSS0007487' => 'camsi', 'CSS0008066' => 'camsi', 'CSS0009120' => 'camsi', 'CSS0015512' => 'camsi', 'CSS0022409' => 'camsi', 'CSS0025358' => 'camsi', 'CSS0044547' => 'camsi', 'DCAR_013057' => 'dca', 'DCAR_015058' => 'dca', 'DCAR_016027' => 'dca', 'DCAR_017327' => 'dca', 'DCAR_020743' => 'dca', 'DCAR_026157' => 'dca', 'DCAR_032339' => 'dca', 'DCAR_032340' => 'dca', 'Dinv11200' => 'din', 'Dinv11201' => 'din', 'Dinv20631' => 'din', 'Dinv23182' => 'din', 'Dinv33466' => 'din', 'Dinv33583' => 'din', 'Dinv38565' => 'din', 'Duzib068G0200' => 'dzi', 'Duzib147G0132' => 'dzi', 'Duzib147G0635' => 'dzi', 'Duzib205G1670' => 'dzi', 'Duzib251G0606' => 'dzi', 'ECA232G3336' => 'eca', 'ECA232G3763' => 'eca', 'ECA232G4845' => 'eca', 'ECA234G1607' => 'eca', 'ECA246G0932' => 'eca', 'ECA247G0781' => 'eca', 'ECA247G1932' => 'eca', 'ECA247G2079' => 'eca', 'ECA247G3338' => 'eca', 'ECA247G4115' => 'eca', 'EL10Ac3g06552' => 'bvu', 'EL10Ac5g10721' => 'bvu', 'EL10Ac5g10722' => 'bvu', 'EL10Ac5g10723' => 'bvu', 'EL10Ac5g11361' => 'bvu', 'EL10Ac6g13553' => 'bvu', 'EL10As8g23872' => 'bvu', 'Eucgr.B00250' => 'egr', 'Eucgr.B00251' => 'egr', 'Eucgr.B03533' => 'egr', 'Eucgr.I02381' => 'egr', 'Eucgr.K02700' => 'egr', 'FAN02G0174' => 'fan', 'FAN02G3146' => 'fan', 'FAN04G1672' => 'fan', 'FAN04G2273' => 'fan', 'FAN05G2791' => 'fan', 'FAN05G4035' => 'fan', 'FAN07G0834' => 'fan', 'FAN08G1198' => 'fan', 'FAN09G4182' => 'fan', 'FAN12G0496' => 'fan', 'FAN13G1027' => 'fan', 'FAN13G2951' => 'fan', 'FAN14G0705' => 'fan', 'FAN14G0720' => 'fan', 'FAN17G0201' => 'fan', 'FAN17G2665' => 'fan', 'FAN18G1456' => 'fan', 'FAN18G1525' => 'fan', 'FAN18G3500' => 'fan', 'FAN28G2670' => 'fan', 'FvH4_1g12391' => 'fve', 'FvH4_4g23220' => 'fve', 'FvH4_5g08810' => 'fve', 'FvH4_5g28960' => 'fve', 'FvH4_6g42820' => 'fve', 'FvH4_6g51110' => 'fve', 'Glyma.02G051802' => 'gma', 'Glyma.04G185300' => 'gma', 'Glyma.05G202900' => 'gma', 'Glyma.08G010300' => 'gma', 'Glyma.16G131900' => 'gma', 'Glyma.17G087900' => 'gma', 'Gohir.A07G048600' => 'ghi', 'Gohir.A11G179000' => 'ghi', 'Gohir.A12G140900' => 'ghi', 'Gohir.A12G140950' => 'ghi', 'Gohir.A12G191700' => 'ghi', 'Gohir.A13G086300' => 'ghi', 'Gohir.D07G052900' => 'ghi', 'Gohir.D11G186600' => 'ghi', 'Gohir.D12G145575' => 'ghi', 'Gohir.D12G145650' => 'ghi', 'Gohir.D12G145725' => 'ghi', 'Gohir.D12G194050' => 'ghi', 'Gohir.D13G091800' => 'ghi', 'Gorai.001G055900' => 'gra', 'Gorai.007G198400' => 'gra', 'Gorai.008G157000' => 'gra', 'Gorai.008G157100' => 'gra', 'Gorai.008G208700' => 'gra', 'Gorai.010G138700' => 'gra', 'GSVIVG01000977001' => 'vvi', 'GSVIVG01007708001' => 'vvi', 'GSVIVG01008587001' => 'vvi', 'GSVIVG01018849001' => 'vvi', 'GSVIVG01032432001' => 'vvi', 'HanXRQChr02g0034131' => 'han', 'HanXRQChr02g0035981' => 'han', 'HanXRQChr02g0035991' => 'han', 'HanXRQChr05g0155611' => 'han', 'HanXRQChr05g0155621' => 'han', 'HanXRQChr08g0236501' => 'han', 'HanXRQChr09g0261321' => 'han', 'HanXRQChr09g0272081' => 'han', 'HanXRQChr10g0310741' => 'han', 'HanXRQChr11g0325591' => 'han', 'HanXRQChr12g0385691' => 'han', 'HanXRQChr13g0387801' => 'han', 'HanXRQChr15g0463011' => 'han', 'Haze_03826' => 'cav', 'Haze_03827' => 'cav', 'Haze_07183' => 'cav', 'Haze_07537' => 'cav', 'Haze_07539' => 'cav', 'Haze_12461' => 'cav', 'Haze_16115' => 'cav', 'Haze_16808' => 'cav', 'Haze_18531' => 'cav', 'Hma1.2p1_0046F.1_g026700' => 'hma', 'Hma1.2p1_0046F.1_g026710' => 'hma', 'Hma1.2p1_0168F.1_g074340' => 'hma', 'Hma1.2p1_0266F.1_g107030' => 'hma', 'Hma1.2p1_0266F.1_g107060' => 'hma', 'Hma1.2p1_0275F.1_g110510' => 'hma', 'Hma1.2p1_0592F.1_g185490' => 'hma', 'Hma1.2p1_0592F.1_g185500' => 'hma', 'Hma1.2p1_0592F.1_g185510' => 'hma', 'Hma1.2p1_0592F.1_g185520' => 'hma', 'Hma1.2p1_0592F.1_g185530' => 'hma', 'Hma1.2p1_0818F.1_g223450' => 'hma', 'HPP92_009708' => 'vpl', 'HPP92_009793' => 'vpl', 'HPP92_009796' => 'vpl', 'HPP92_009797' => 'vpl', 'HPP92_014940' => 'vpl', 'HPP92_014988' => 'vpl', 'Hund02463' => 'sun', 'Hund02760' => 'sun', 'Hund05071' => 'sun', 'Hund10108' => 'sun', 'Hund11204' => 'sun', 'Hund14016' => 'sun', 'Hund16464' => 'sun', 'Lalb_Chr09g0333391' => 'lal', 'Lalb_Chr11g0070461' => 'lal', 'Lalb_Chr12g0201671' => 'lal', 'Lalb_Chr13g0297161' => 'lal', 'Lj1g0002823' => 'lja', 'Lj3C1074T6' => 'lonja', 'Lj4A212T28' => 'lonja', 'Lj4g0005516' => 'lja', 'Lj4g0013705' => 'lja', 'Lj4g0027865' => 'lja', 'Lj5C92G16' => 'lonja', 'Lj5C92T12' => 'lonja', 'Lj7C596T3' => 'lonja', 'Lj9A446G59' => 'lonja', 'Lj9A482G21' => 'lonja', 'Lsat_1_v5_gn_1_28261' => 'lsa', 'Lsat_1_v5_gn_1_28281' => 'lsa', 'Lsat_1_v5_gn_1_32721' => 'lsa', 'Lsat_1_v5_gn_4_151760' => 'lsa', 'Lsat_1_v5_gn_4_2120' => 'lsa', 'Lsat_1_v5_gn_4_75761' => 'lsa', 'Lsat_1_v5_gn_5_10920' => 'lsa', 'Manes.02G099900' => 'mes', 'Manes.11G096200' => 'mes', 'Manes.12G007200' => 'mes', 'Manes.14G048300' => 'mes', 'Manes.17G114700' => 'mes', 'Mapoly0002s0070' => 'mpo', 'Mapoly0029s0099' => 'mpo', 'MBI07_g24742_MAGBIO' => 'mbi', 'MBI10_g27988_MAGBIO' => 'mbi', 'MBI11_g13057_MAGBIO' => 'mbi', 'MD02G1137200' => 'mdo', 'MD06G1137200' => 'mdo', 'MD07G1122300' => 'mdo', 'MD09G1078200' => 'mdo', 'MD13G1123700' => 'mdo', 'MD14G1151900' => 'mdo', 'MD17G1030900' => 'mdo', 'MD17G1068200' => 'mdo', 'MD17G1068600' => 'mdo', 'Medtr3g077540' => 'mtr', 'Medtr4g105530' => 'mtr', 'Medtr8g076580' => 'mtr', 'Medtr8g076590' => 'mtr', 'Medtr8g096410' => 'mtr', 'MELO3C016411.2' => 'cme', 'MELO3C017780.2' => 'cme', 'MELO3C022560.2' => 'cme', 'MELO3C026187.2' => 'cme', 'MELO3C026286.2' => 'cme', 'MELO3C032854.2' => 'cme', 'Migut.H02495' => 'egut', 'Migut.I00561' => 'egut', 'Migut.K01015' => 'egut', 'Migut.K01016' => 'egut', 'Migut.L00743' => 'egut', 'Migut.L00744' => 'egut', 'Migut.L00746' => 'egut', 'Migut.L00798' => 'egut', 'Migut.L00799' => 'egut', 'Migut.N02096' => 'egut', 'MSTRG.11259' => 'ama', 'MSTRG.23142' => 'ama', 'MSTRG.2499' => 'ama', 'Nitab4.5_0000003g0730' => 'nta', 'Nitab4.5_0000137g0020' => 'nta', 'Nitab4.5_0000721g0210' => 'nta', 'Nitab4.5_0000723g0050' => 'nta', 'Nitab4.5_0000913g0070' => 'nta', 'Nitab4.5_0001332g0040' => 'nta', 'Nitab4.5_0001771g0050' => 'nta', 'Nitab4.5_0001918g0050' => 'nta', 'Nitab4.5_0002686g0030' => 'nta', 'Nitab4.5_0003156g0020' => 'nta', 'Nitab4.5_0003383g0040' => 'nta', 'Nitab4.5_0003918g0010' => 'nta', 'Nitab4.5_0006760g0010' => 'nta', 'Nn1g05981' => 'nnu', 'Nn1g06288' => 'nnu', 'Nn3g16371' => 'nnu', 'Nn3g16786' => 'nnu', 'Nn4g22232' => 'nnu', 'Oeu005144.1' => 'oeu', 'Oeu005145.1' => 'oeu', 'Oeu011348.1' => 'oeu', 'Oeu016415.1' => 'oeu', 'Oeu023501.1' => 'oeu', 'Oeu044473.1' => 'oeu', 'Oeu048892.2' => 'oeu', 'Os01g0549200' => 'osa', 'Os02g0469300' => 'osa', 'Os04g0311100' => 'osa', 'Os06g0474900' => 'osa', 'Os10g0181700' => 'osa', 'Os11g0454800' => 'osa', 'Peaxi162Scf00037g00714' => 'pax', 'Peaxi162Scf00084g01217' => 'pax', 'Peaxi162Scf00257g00217' => 'pax', 'Peaxi162Scf00516g00215' => 'pax', 'Peaxi162Scf00689g00123' => 'pax', 'PGR044G2719' => 'pgr', 'PGR083G1360' => 'pgr', 'PGR102G2849' => 'pgr', 'PGR119G2534' => 'pgr', 'PGSC0003DMG400003538' => 'stu', 'PGSC0003DMG400028138' => 'stu', 'PGSC0003DMG400031732' => 'stu', 'PGSC0003DMG400038165' => 'stu', 'Phvul.002G284600' => 'pvu', 'Phvul.003G258200' => 'pvu', 'Phvul.009G176500' => 'pvu', 'Potri.003G167201' => 'ptr', 'Potri.005G118400' => 'ptr', 'Potri.012G089000' => 'ptr', 'Potri.012G102800' => 'ptr', 'Potri.015G079400' => 'ptr', 'Potri.015G100900' => 'ptr', 'Pp3c14_9810' => 'ppa', 'Pp3c15_10450' => 'ppa', 'Pp3c20_19150' => 'ppa', 'Pp3c23_12740' => 'ppa', 'Pp3c23_6310' => 'ppa', 'Pp3c24_3720' => 'ppa', 'Pp3c27_2580' => 'ppa', 'Pp3c9_8990' => 'ppa', 'PRCOL_00002854' => 'pco', 'Prupe.1G221200' => 'ppe', 'Prupe.3G289000' => 'ppe', 'Prupe.5G147000' => 'ppe', 'Prupe.6G157300' => 'ppe', 'Prupe.7G163400' => 'ppe', 'Psat0s2177g0040' => 'psa', 'Psat3g174760' => 'psa', 'Psat3g192160' => 'psa', 'Psat4g058520' => 'psa', 'Psat4g096840' => 'psa', 'Psat7g037320' => 'psa', 'PSO017G1274' => 'pso', 'PSO017G5166' => 'pso', 'PSO063G4558' => 'pso', 'PSO170G4458' => 'pso', 'PSO170G5005' => 'pso', 'PSO210G6156' => 'pso', 'PSO210G6635' => 'pso', 'PSO210G7397' => 'pso', 'PSO210G7700' => 'pso', 'PSO455G0035' => 'pso', 'PSO455G0180' => 'pso', 'PSO478G4515' => 'pso', 'PSO832G1305' => 'pso', 'PSO832G3489' => 'pso', 'QL02p075247' => 'qlo', 'QL03p051148' => 'qlo', 'QL05p010313' => 'qlo', 'QL06p034627' => 'qlo', 'QL10p001889' => 'qlo', 'QL10p010846' => 'qlo', 'RcHm_v2.0_Chr1g0350621' => 'rch', 'RcHm_v2.0_Chr1g0350641' => 'rch', 'RcHm_v2.0_Chr2g0092891' => 'rch', 'RcHm_v2.0_Chr2g0100251' => 'rch', 'RcHm_v2.0_Chr2g0158661' => 'rch', 'RcHm_v2.0_Chr2g0172741' => 'rch', 'RcHm_v2.0_Chr4g0429571' => 'rch', 'RcHm_v2.0_Chr5g0042471' => 'rch', 'RcHm_v2.0_Chr7g0189451' => 'rch', 'Rhsim08G0052000' => 'rsi', 'Rhsim08G0174400' => 'rsi', 'Rhsim08G0193200' => 'rsi', 'Rhsim10G0214800' => 'rsi', 'Rhsim10G0214900' => 'rsi', 'Rhsim10G0215000' => 'rsi', 'Rhsim12G0022900' => 'rsi', 'Rhsim12G0177500' => 'rsi', 'Rhsim12G0177700' => 'rsi', 'Sabra03G0122600' => 'sbr', 'Sabra05G0097400' => 'sbr', 'Sabra12G0064100' => 'sbr', 'Sabra15G0121300' => 'sbr', 'SalBow2G0642' => 'sbo', 'SalBow5G2667' => 'sbo', 'SalBow5G4873' => 'sbo', 'SalBow8G2395' => 'sbo', 'Sc03g0003290' => 'sci', 'Sc10g0010130' => 'sci', 'Sc22g0003650' => 'sci', 'Sed0001603' => 'sed', 'Sed0004259' => 'sed', 'Sed0006789' => 'sed', 'Sed0011838' => 'sed', 'Sed0012964' => 'sed', 'Sed0016383' => 'sed', 'Sed0019010' => 'sed', 'Sed0020188' => 'sed', 'SEGI_04702' => 'sgi', 'SEGI_17231' => 'sgi', 'SEGI_18877' => 'sgi', 'SEGI_25196' => 'sgi', 'SEGI_25515' => 'sgi', 'SEGI_28445' => 'sgi', 'SEGI_37452' => 'sgi', 'SGA_v2.0_scaffold188G40336' => 'sas', 'SGA_v2.0_scaffold228G43247' => 'sas', 'SGA_v2.0_scaffold280G46853' => 'sas', 'SGA_v2.0_scaffold34G13808' => 'sas', 'SGA_v2.0_scaffold40G15576' => 'sas', 'SGA_v2.0_scaffold611G53188' => 'sas', 'SGA_v2.0_scaffold78G25461' => 'sas', 'SGA_v2.0_scaffold90G27888' => 'sas', 'SHI08601' => 'shi', 'SHI08606' => 'shi', 'SHI17117' => 'shi', 'SHI17119' => 'shi', 'SMO118G0201' => 'smo', 'SMO169G0247' => 'smo', 'SMO176G0006' => 'smo', 'SMO176G0015' => 'smo', 'SMO202G0006' => 'smo', 'SMO240G0050' => 'smo', 'SMO286G0009' => 'smo', 'SMO338G0033' => 'smo', 'SMO356G0533' => 'smo', 'SMO364G0382' => 'smo', 'SMO367G0166' => 'smo', 'SMO367G1098' => 'smo', 'Solyc01g009920.3' => 'sly', 'Solyc01g099300.3' => 'sly', 'Solyc02g084700.3' => 'sly', 'Solyc03g097520.3' => 'sly', 'Solyc06g071580.3' => 'sly', 'Solyc10g081760.3' => 'sly', 'Sopen01g005480' => 'spe', 'Sopen01g042850' => 'spe', 'Sopen02g029370' => 'spe', 'Sopen03g028280' => 'spe', 'Sopen06g027870' => 'spe', 'Sopen10g032270' => 'spe', 'Sp5g18180' => 'spa', 'Sp6g12880' => 'spa', 'Sp6g30850' => 'spa', 'Sp7g22960' => 'spa', 'Sp7g34010' => 'spa', 'SpUn1326_0010' => 'spa', 'TAR371G0242' => 'tar', 'TAR622G0638' => 'tar', 'TAR628G1548' => 'tar', 'TAR629G1079' => 'tar', 'TAR629G3413' => 'tar', 'THA.LOC104804249' => 'tha', 'THA.LOC104808315' => 'tha', 'THA.LOC104809238' => 'tha', 'THA.LOC104825484' => 'tha', 'Thecc.01G025500' => 'tca', 'Thecc.03G015800' => 'tca', 'Thecc.03G018000' => 'tca', 'Thecc.03G134800' => 'tca', 'Thecc.04G014700' => 'tca', 'Thhalv10006991m.g' => 'esa', 'Thhalv10012707m.g' => 'esa', 'Thhalv10015739m.g' => 'esa', 'Thhalv10024553m.g' => 'esa', 'Thhalv10024673m.g' => 'esa', 'Thhalv10029187m.g' => 'esa', 'TPR.G12971' => 'tpr', 'TPR.G29396' => 'tpr', 'TPR.G33376' => 'tpr', 'TPR.G35508' => 'tpr', 'TPR.G35516' => 'tpr', 'TPR.G37317' => 'tpr', 'TPR.G37389' => 'tpr', 'TPR.G37523' => 'tpr', 'TPR.G559' => 'tpr', 'TWI14G0070' => 'twi', 'TWI14G0729' => 'twi', 'TWI18G0596' => 'twi', 'TWI39G0780' => 'twi', 'TWI39G0850' => 'twi', 'TWI73G1052' => 'twi', 'unitig_52.g17485' => 'ugi', 'unitig_61.g26355' => 'ugi', 'vmacro01040' => 'vma', 'vmacro16731' => 'vma', 'vmacro18270' => 'vma', 'vmacro19142' => 'vma', 'vmacro19407' => 'vma', 'vmacro19408' => 'vma', 'vmacro21899' => 'vma', 'vmacro21900' => 'vma', 'vmacro21901' => 'vma', 'VMungo0251G0490' => 'vmu', 'VMungo0251G1748' => 'vmu', 'VMungo1309G0421' => 'vmu', 'Zm00001eb086500' => 'zma', 'Zm00001eb150680' => 'zma', 'Zm00001eb162330' => 'zma', 'Zm00001eb203130' => 'zma', 'Zm00001eb369480' => 'zma', 'Zm00001eb382340' => 'zma', 'Zm00001eb416360' => 'zma' ) $gf_id = 'HOM05D000902' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000902' ) $data_identifier = 'HOM05D000902' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 13, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 10, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 6, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 9, 'hma' => (int) 12, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 4, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 6, 'ppa' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 6, 'rch' => (int) 9, 'rsi' => (int) 9, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 12, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 3, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416360' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000902', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '663', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02470' => 'bna', 'A01p16260' => 'bna', 'A02p01680' => 'bna', 'A03p16600' => 'bna', 'A03p55660' => 'bna', 'A03p64160' => 'bna', 'A03p64170' => 'bna', 'A08p31900' => 'bna', 'A09p59530' => 'bna', 'A10p08230' => 'bna', 'A10p25090' => 'bna', 'Aa31LG3G7100' => 'aar', 'Aa31LG3G7110' => 'aar', 'Aa31LG6G13160' => 'aar', 'Aa31LG7G10770' => 'aar', 'Aa31LG7G3830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2723' => 'aag', 'Actinidia08045' => 'ach', 'Actinidia08888' => 'ach', 'Actinidia18333' => 'ach', 'Actinidia19334' => 'ach', 'Actinidia25552' => 'ach', 'Actinidia26089' => 'ach', 'Actinidia30615' => 'ach', 'Actinidia30616' => 'ach', 'Actinidia33083' => 'ach', 'Actinidia35762' => 'ach', 'Ah.02g110620' => 'amhyb', 'Ah.11g046390' => 'amhyb', 'AL1G31670' => 'aly', 'AL6G23730' => 'aly', 'AL7G14740' => 'aly', 'AL7G14750' => 'aly', 'AL7G14760' => 'aly', 'AL7G28220' => 'aly', 'AL8G24940' => 'aly', 'Aqoxy3G01665' => 'aox', 'Aqoxy3G02853' => 'aox', 'Aqoxy5G01513' => 'aox', 'Aqoxy5G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8SKA4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ75LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKDA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0LJZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7REX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZP4YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWX7I5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2QKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS0L9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPCD8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q161UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC7XCF' => 'arhy', 'AT1G19100' => 'ath', 'AT4G24970' => 'ath', 'AT4G36270' => 'ath', 'AT4G36280' => 'ath', 'AT4G36290' => 'ath', 'AT5G13130' => 'ath', 'AT5G50780' => 'ath', 'ATR0582G266' => 'atr', 'ATR0661G195' => 'atr', 'ATR1152G031' => 'atr', 'Atru.chr11.2382' => 'acertr', 'Atru.chr12.2337' => 'acertr', 'Atru.chr3.744' => 'acertr', 'Atru.chr6.1870' => 'acertr', 'Atru.chr9.2515' => 'acertr', 'AUR62004120' => 'cqu', 'AUR62005667' => 'cqu', 'AUR62007634' => 'cqu', 'AUR62008186' => 'cqu', 'AUR62008187' => 'cqu', 'AUR62008188' => 'cqu', 'AUR62027954' => 'cqu', 'AUR62028766' => 'cqu', 'AUR62028767' => 'cqu', 'AUR62028768' => 'cqu', 'AUR62028886' => 'cqu', 'AUR62029563' => 'cqu', 'AUR62038832' => 'cqu', 'BcaB01g04149' => 'bca', 'BcaB03g12940' => 'bca', 'BcaB03g13090' => 'bca', 'BcaB03g14466' => 'bca', 'BcaB05g24035' => 'bca', 'BcaC01g06050' => 'bca', 'BcaC04g19148' => 'bca', 'BcaC04g20761' => 'bca', 'BcaC06g32845' => 'bca', 'BcaC07g41274' => 'bca', 'BcaC09g50827' => 'bca', 'BcaNung00741' => 'bca', 'BcaNung00742' => 'bca', 'BcaNung01859' => 'bca', 'BcaNung03985' => 'bca', 'BcaNung03989' => 'bca', 'BcaNung05661' => 'bca', 'BolC1t00257H' => 'bol', 'BolC1t01956H' => 'bol', 'BolC2t06534H' => 'bol', 'BolC3t14334H' => 'bol', 'BolC5t30451H' => 'bol', 'BolC7t45880H' => 'bol', 'BolC7t46586H' => 'bol', 'BolC8t49301H' => 'bol', 'BolC8t51837H' => 'bol', 'BolC9t56822H' => 'bol', 'BolC9t59235H' => 'bol', 'BraA01t00234Z' => 'bra', 'BraA01t01563Z' => 'bra', 'BraA02t05147Z' => 'bra', 'BraA03t10947Z' => 'bra', 'BraA03t14633Z' => 'bra', 'BraA08t35112Z' => 'bra', 'BraA09t41330Z' => 'bra', 'BraA10t44570Z' => 'bra', 'C01p02670' => 'bna', 'C01p20260' => 'bna', 'C02p05890' => 'bna', 'C03p19530' => 'bna', 'C05p17470' => 'bna', 'C07p53900' => 'bna', 'C07p61630' => 'bna', 'C08p16800' => 'bna', 'C08p42810' => 'bna', 'C09p39480' => 'bna', 'C09p63980' => 'bna', 'CAN.G1001.7' => 'can', 'CAN.G1034.55' => 'can', 'CAN.G143.7' => 'can', 'CAN.G3340.1' => 'can', 'CAN.G358.19' => 'can', 'CAN.G373.2' => 'can', 'CAN.G674.16' => 'can', 'CAN.G674.17' => 'can', 'CAN.G674.18' => 'can', 'CAN.G732.2' => 'can', 'CAN.G732.3' => 'can', 'CAN.G993.39' => 'can', 'CANSAT01G2052' => 'cansat', 'CANSAT80G0070' => 'cansat', 'CANSAT80G0483' => 'cansat', 'CANSAT80G0625' => 'cansat', 'CARHR019690' => 'chi', 'CARHR080280' => 'chi', 'CARHR152750' => 'chi', 'CARHR152760' => 'chi', 'CARHR152770' => 'chi', 'CARHR200340' => 'chi', 'CARHR232370' => 'chi', 'CARHR244670' => 'chi', 'CARHR244680' => 'chi', 'CARHR257520' => 'chi', 'Carub.0001s1872' => 'cru', 'Carub.0006s1130' => 'cru', 'Carub.0007s0396' => 'cru', 'Carub.0007s0397' => 'cru', 'Carub.0007s1608' => 'cru', 'Carub.0008s1068' => 'cru', 'Carub.0008s1077' => 'cru', 'Ca_16158_v3' => 'car', 'Ca_17571_v3' => 'car', 'Ca_21936_v3' => 'car', 'Ca_22350_v3' => 'car', 'CBR_g22445' => 'cbr', 'CBR_g26290' => 'cbr', 'Cc04_g09610' => 'ccan', 'Cc04_g12280' => 'ccan', 'Cc07_g10230' => 'ccan', 'CDE02G0093' => 'cde', 'CDE02G0701' => 'cde', 'CDE04G1050' => 'cde', 'CDE05G1833' => 'cde', 'CDE05G3058' => 'cde', 'CDE05G3380' => 'cde', 'CDE06G0536' => 'cde', 'Cfa006923' => 'cfa', 'Cfa009402' => 'cfa', 'Cfa018751' => 'cfa', 'Cfa019164' => 'cfa', 'Cfa022935' => 'cfa', 'Ciclev10019081m.g' => 'ccl', 'Ciclev10025076m.g' => 'ccl', 'Ciclev10030712m.g' => 'ccl', 'Ciclev10033760m.g' => 'ccl', 'CiPaw.05G105600' => 'cil', 'CiPaw.08G136700' => 'cil', 'CiPaw.11G003900' => 'cil', 'CiPaw.11G023700' => 'cil', 'CiPaw.12G003700' => 'cil', 'ClCG06G017100' => 'cla', 'ClCG06G018110' => 'cla', 'ClCG07G008800' => 'cla', 'ClCG07G015330' => 'cla', 'COL.COLO4_13698' => 'col', 'COL.COLO4_16659' => 'col', 'COL.COLO4_21986' => 'col', 'COL.COLO4_24049' => 'col', 'COL.COLO4_29061' => 'col', 'COL.COLO4_29075' => 'col', 'COL.COLO4_30094' => 'col', 'Cpa.g.c33689' => 'cpa', 'Cpa.g.sc108.39' => 'cpa', 'Cpa.g.sc108.41' => 'cpa', 'Cpa.g.sc1163.1' => 'cpa', 'Cpa.g.sc4.155' => 'cpa', 'Cpa.g.sc6.194' => 'cpa', 'CsaV3_1G000340' => 'csa', 'CsaV3_1G001400' => 'csa', 'CsaV3_4G002220' => 'csa', 'CsaV3_4G005370' => 'csa', 'CSS0007487' => 'camsi', 'CSS0008066' => 'camsi', 'CSS0009120' => 'camsi', 'CSS0015512' => 'camsi', 'CSS0022409' => 'camsi', 'CSS0025358' => 'camsi', 'CSS0044547' => 'camsi', 'DCAR_013057' => 'dca', 'DCAR_015058' => 'dca', 'DCAR_016027' => 'dca', 'DCAR_017327' => 'dca', 'DCAR_020743' => 'dca', 'DCAR_026157' => 'dca', 'DCAR_032339' => 'dca', 'DCAR_032340' => 'dca', 'Dinv11200' => 'din', 'Dinv11201' => 'din', 'Dinv20631' => 'din', 'Dinv23182' => 'din', 'Dinv33466' => 'din', 'Dinv33583' => 'din', 'Dinv38565' => 'din', 'Duzib068G0200' => 'dzi', 'Duzib147G0132' => 'dzi', 'Duzib147G0635' => 'dzi', 'Duzib205G1670' => 'dzi', 'Duzib251G0606' => 'dzi', 'ECA232G3336' => 'eca', 'ECA232G3763' => 'eca', 'ECA232G4845' => 'eca', 'ECA234G1607' => 'eca', 'ECA246G0932' => 'eca', 'ECA247G0781' => 'eca', 'ECA247G1932' => 'eca', 'ECA247G2079' => 'eca', 'ECA247G3338' => 'eca', 'ECA247G4115' => 'eca', 'EL10Ac3g06552' => 'bvu', 'EL10Ac5g10721' => 'bvu', 'EL10Ac5g10722' => 'bvu', 'EL10Ac5g10723' => 'bvu', 'EL10Ac5g11361' => 'bvu', 'EL10Ac6g13553' => 'bvu', 'EL10As8g23872' => 'bvu', 'Eucgr.B00250' => 'egr', 'Eucgr.B00251' => 'egr', 'Eucgr.B03533' => 'egr', 'Eucgr.I02381' => 'egr', 'Eucgr.K02700' => 'egr', 'FAN02G0174' => 'fan', 'FAN02G3146' => 'fan', 'FAN04G1672' => 'fan', 'FAN04G2273' => 'fan', 'FAN05G2791' => 'fan', 'FAN05G4035' => 'fan', 'FAN07G0834' => 'fan', 'FAN08G1198' => 'fan', 'FAN09G4182' => 'fan', 'FAN12G0496' => 'fan', 'FAN13G1027' => 'fan', 'FAN13G2951' => 'fan', 'FAN14G0705' => 'fan', 'FAN14G0720' => 'fan', 'FAN17G0201' => 'fan', 'FAN17G2665' => 'fan', 'FAN18G1456' => 'fan', 'FAN18G1525' => 'fan', 'FAN18G3500' => 'fan', 'FAN28G2670' => 'fan', 'FvH4_1g12391' => 'fve', 'FvH4_4g23220' => 'fve', 'FvH4_5g08810' => 'fve', 'FvH4_5g28960' => 'fve', 'FvH4_6g42820' => 'fve', 'FvH4_6g51110' => 'fve', 'Glyma.02G051802' => 'gma', 'Glyma.04G185300' => 'gma', 'Glyma.05G202900' => 'gma', 'Glyma.08G010300' => 'gma', 'Glyma.16G131900' => 'gma', 'Glyma.17G087900' => 'gma', 'Gohir.A07G048600' => 'ghi', 'Gohir.A11G179000' => 'ghi', 'Gohir.A12G140900' => 'ghi', 'Gohir.A12G140950' => 'ghi', 'Gohir.A12G191700' => 'ghi', 'Gohir.A13G086300' => 'ghi', 'Gohir.D07G052900' => 'ghi', 'Gohir.D11G186600' => 'ghi', 'Gohir.D12G145575' => 'ghi', 'Gohir.D12G145650' => 'ghi', 'Gohir.D12G145725' => 'ghi', 'Gohir.D12G194050' => 'ghi', 'Gohir.D13G091800' => 'ghi', 'Gorai.001G055900' => 'gra', 'Gorai.007G198400' => 'gra', 'Gorai.008G157000' => 'gra', 'Gorai.008G157100' => 'gra', 'Gorai.008G208700' => 'gra', 'Gorai.010G138700' => 'gra', 'GSVIVG01000977001' => 'vvi', 'GSVIVG01007708001' => 'vvi', 'GSVIVG01008587001' => 'vvi', 'GSVIVG01018849001' => 'vvi', 'GSVIVG01032432001' => 'vvi', 'HanXRQChr02g0034131' => 'han', 'HanXRQChr02g0035981' => 'han', 'HanXRQChr02g0035991' => 'han', 'HanXRQChr05g0155611' => 'han', 'HanXRQChr05g0155621' => 'han', 'HanXRQChr08g0236501' => 'han', 'HanXRQChr09g0261321' => 'han', 'HanXRQChr09g0272081' => 'han', 'HanXRQChr10g0310741' => 'han', 'HanXRQChr11g0325591' => 'han', 'HanXRQChr12g0385691' => 'han', 'HanXRQChr13g0387801' => 'han', 'HanXRQChr15g0463011' => 'han', 'Haze_03826' => 'cav', 'Haze_03827' => 'cav', 'Haze_07183' => 'cav', 'Haze_07537' => 'cav', 'Haze_07539' => 'cav', 'Haze_12461' => 'cav', 'Haze_16115' => 'cav', 'Haze_16808' => 'cav', 'Haze_18531' => 'cav', 'Hma1.2p1_0046F.1_g026700' => 'hma', 'Hma1.2p1_0046F.1_g026710' => 'hma', 'Hma1.2p1_0168F.1_g074340' => 'hma', 'Hma1.2p1_0266F.1_g107030' => 'hma', 'Hma1.2p1_0266F.1_g107060' => 'hma', 'Hma1.2p1_0275F.1_g110510' => 'hma', 'Hma1.2p1_0592F.1_g185490' => 'hma', 'Hma1.2p1_0592F.1_g185500' => 'hma', 'Hma1.2p1_0592F.1_g185510' => 'hma', 'Hma1.2p1_0592F.1_g185520' => 'hma', 'Hma1.2p1_0592F.1_g185530' => 'hma', 'Hma1.2p1_0818F.1_g223450' => 'hma', 'HPP92_009708' => 'vpl', 'HPP92_009793' => 'vpl', 'HPP92_009796' => 'vpl', 'HPP92_009797' => 'vpl', 'HPP92_014940' => 'vpl', 'HPP92_014988' => 'vpl', 'Hund02463' => 'sun', 'Hund02760' => 'sun', 'Hund05071' => 'sun', 'Hund10108' => 'sun', 'Hund11204' => 'sun', 'Hund14016' => 'sun', 'Hund16464' => 'sun', 'Lalb_Chr09g0333391' => 'lal', 'Lalb_Chr11g0070461' => 'lal', 'Lalb_Chr12g0201671' => 'lal', 'Lalb_Chr13g0297161' => 'lal', 'Lj1g0002823' => 'lja', 'Lj3C1074T6' => 'lonja', 'Lj4A212T28' => 'lonja', 'Lj4g0005516' => 'lja', 'Lj4g0013705' => 'lja', 'Lj4g0027865' => 'lja', 'Lj5C92G16' => 'lonja', 'Lj5C92T12' => 'lonja', 'Lj7C596T3' => 'lonja', 'Lj9A446G59' => 'lonja', 'Lj9A482G21' => 'lonja', 'Lsat_1_v5_gn_1_28261' => 'lsa', 'Lsat_1_v5_gn_1_28281' => 'lsa', 'Lsat_1_v5_gn_1_32721' => 'lsa', 'Lsat_1_v5_gn_4_151760' => 'lsa', 'Lsat_1_v5_gn_4_2120' => 'lsa', 'Lsat_1_v5_gn_4_75761' => 'lsa', 'Lsat_1_v5_gn_5_10920' => 'lsa', 'Manes.02G099900' => 'mes', 'Manes.11G096200' => 'mes', 'Manes.12G007200' => 'mes', 'Manes.14G048300' => 'mes', 'Manes.17G114700' => 'mes', 'Mapoly0002s0070' => 'mpo', 'Mapoly0029s0099' => 'mpo', 'MBI07_g24742_MAGBIO' => 'mbi', 'MBI10_g27988_MAGBIO' => 'mbi', 'MBI11_g13057_MAGBIO' => 'mbi', 'MD02G1137200' => 'mdo', 'MD06G1137200' => 'mdo', 'MD07G1122300' => 'mdo', 'MD09G1078200' => 'mdo', 'MD13G1123700' => 'mdo', 'MD14G1151900' => 'mdo', 'MD17G1030900' => 'mdo', 'MD17G1068200' => 'mdo', 'MD17G1068600' => 'mdo', 'Medtr3g077540' => 'mtr', 'Medtr4g105530' => 'mtr', 'Medtr8g076580' => 'mtr', 'Medtr8g076590' => 'mtr', 'Medtr8g096410' => 'mtr', 'MELO3C016411.2' => 'cme', 'MELO3C017780.2' => 'cme', 'MELO3C022560.2' => 'cme', 'MELO3C026187.2' => 'cme', 'MELO3C026286.2' => 'cme', 'MELO3C032854.2' => 'cme', 'Migut.H02495' => 'egut', 'Migut.I00561' => 'egut', 'Migut.K01015' => 'egut', 'Migut.K01016' => 'egut', 'Migut.L00743' => 'egut', 'Migut.L00744' => 'egut', 'Migut.L00746' => 'egut', 'Migut.L00798' => 'egut', 'Migut.L00799' => 'egut', 'Migut.N02096' => 'egut', 'MSTRG.11259' => 'ama', 'MSTRG.23142' => 'ama', 'MSTRG.2499' => 'ama', 'Nitab4.5_0000003g0730' => 'nta', 'Nitab4.5_0000137g0020' => 'nta', 'Nitab4.5_0000721g0210' => 'nta', 'Nitab4.5_0000723g0050' => 'nta', 'Nitab4.5_0000913g0070' => 'nta', 'Nitab4.5_0001332g0040' => 'nta', 'Nitab4.5_0001771g0050' => 'nta', 'Nitab4.5_0001918g0050' => 'nta', 'Nitab4.5_0002686g0030' => 'nta', 'Nitab4.5_0003156g0020' => 'nta', 'Nitab4.5_0003383g0040' => 'nta', 'Nitab4.5_0003918g0010' => 'nta', 'Nitab4.5_0006760g0010' => 'nta', 'Nn1g05981' => 'nnu', 'Nn1g06288' => 'nnu', 'Nn3g16371' => 'nnu', 'Nn3g16786' => 'nnu', 'Nn4g22232' => 'nnu', 'Oeu005144.1' => 'oeu', 'Oeu005145.1' => 'oeu', 'Oeu011348.1' => 'oeu', 'Oeu016415.1' => 'oeu', 'Oeu023501.1' => 'oeu', 'Oeu044473.1' => 'oeu', 'Oeu048892.2' => 'oeu', 'Os01g0549200' => 'osa', 'Os02g0469300' => 'osa', 'Os04g0311100' => 'osa', 'Os06g0474900' => 'osa', 'Os10g0181700' => 'osa', 'Os11g0454800' => 'osa', 'Peaxi162Scf00037g00714' => 'pax', 'Peaxi162Scf00084g01217' => 'pax', 'Peaxi162Scf00257g00217' => 'pax', 'Peaxi162Scf00516g00215' => 'pax', 'Peaxi162Scf00689g00123' => 'pax', 'PGR044G2719' => 'pgr', 'PGR083G1360' => 'pgr', 'PGR102G2849' => 'pgr', 'PGR119G2534' => 'pgr', 'PGSC0003DMG400003538' => 'stu', 'PGSC0003DMG400028138' => 'stu', 'PGSC0003DMG400031732' => 'stu', 'PGSC0003DMG400038165' => 'stu', 'Phvul.002G284600' => 'pvu', 'Phvul.003G258200' => 'pvu', 'Phvul.009G176500' => 'pvu', 'Potri.003G167201' => 'ptr', 'Potri.005G118400' => 'ptr', 'Potri.012G089000' => 'ptr', 'Potri.012G102800' => 'ptr', 'Potri.015G079400' => 'ptr', 'Potri.015G100900' => 'ptr', 'Pp3c14_9810' => 'ppa', 'Pp3c15_10450' => 'ppa', 'Pp3c20_19150' => 'ppa', 'Pp3c23_12740' => 'ppa', 'Pp3c23_6310' => 'ppa', 'Pp3c24_3720' => 'ppa', 'Pp3c27_2580' => 'ppa', 'Pp3c9_8990' => 'ppa', 'PRCOL_00002854' => 'pco', 'Prupe.1G221200' => 'ppe', 'Prupe.3G289000' => 'ppe', 'Prupe.5G147000' => 'ppe', 'Prupe.6G157300' => 'ppe', 'Prupe.7G163400' => 'ppe', 'Psat0s2177g0040' => 'psa', 'Psat3g174760' => 'psa', 'Psat3g192160' => 'psa', 'Psat4g058520' => 'psa', 'Psat4g096840' => 'psa', 'Psat7g037320' => 'psa', 'PSO017G1274' => 'pso', 'PSO017G5166' => 'pso', 'PSO063G4558' => 'pso', 'PSO170G4458' => 'pso', 'PSO170G5005' => 'pso', 'PSO210G6156' => 'pso', 'PSO210G6635' => 'pso', 'PSO210G7397' => 'pso', 'PSO210G7700' => 'pso', 'PSO455G0035' => 'pso', 'PSO455G0180' => 'pso', 'PSO478G4515' => 'pso', 'PSO832G1305' => 'pso', 'PSO832G3489' => 'pso', 'QL02p075247' => 'qlo', 'QL03p051148' => 'qlo', 'QL05p010313' => 'qlo', 'QL06p034627' => 'qlo', 'QL10p001889' => 'qlo', 'QL10p010846' => 'qlo', 'RcHm_v2.0_Chr1g0350621' => 'rch', 'RcHm_v2.0_Chr1g0350641' => 'rch', 'RcHm_v2.0_Chr2g0092891' => 'rch', 'RcHm_v2.0_Chr2g0100251' => 'rch', 'RcHm_v2.0_Chr2g0158661' => 'rch', 'RcHm_v2.0_Chr2g0172741' => 'rch', 'RcHm_v2.0_Chr4g0429571' => 'rch', 'RcHm_v2.0_Chr5g0042471' => 'rch', 'RcHm_v2.0_Chr7g0189451' => 'rch', 'Rhsim08G0052000' => 'rsi', 'Rhsim08G0174400' => 'rsi', 'Rhsim08G0193200' => 'rsi', 'Rhsim10G0214800' => 'rsi', 'Rhsim10G0214900' => 'rsi', 'Rhsim10G0215000' => 'rsi', 'Rhsim12G0022900' => 'rsi', 'Rhsim12G0177500' => 'rsi', 'Rhsim12G0177700' => 'rsi', 'Sabra03G0122600' => 'sbr', 'Sabra05G0097400' => 'sbr', 'Sabra12G0064100' => 'sbr', 'Sabra15G0121300' => 'sbr', 'SalBow2G0642' => 'sbo', 'SalBow5G2667' => 'sbo', 'SalBow5G4873' => 'sbo', 'SalBow8G2395' => 'sbo', 'Sc03g0003290' => 'sci', 'Sc10g0010130' => 'sci', 'Sc22g0003650' => 'sci', 'Sed0001603' => 'sed', 'Sed0004259' => 'sed', 'Sed0006789' => 'sed', 'Sed0011838' => 'sed', 'Sed0012964' => 'sed', 'Sed0016383' => 'sed', 'Sed0019010' => 'sed', 'Sed0020188' => 'sed', 'SEGI_04702' => 'sgi', 'SEGI_17231' => 'sgi', 'SEGI_18877' => 'sgi', 'SEGI_25196' => 'sgi', 'SEGI_25515' => 'sgi', 'SEGI_28445' => 'sgi', 'SEGI_37452' => 'sgi', 'SGA_v2.0_scaffold188G40336' => 'sas', 'SGA_v2.0_scaffold228G43247' => 'sas', 'SGA_v2.0_scaffold280G46853' => 'sas', 'SGA_v2.0_scaffold34G13808' => 'sas', 'SGA_v2.0_scaffold40G15576' => 'sas', 'SGA_v2.0_scaffold611G53188' => 'sas', 'SGA_v2.0_scaffold78G25461' => 'sas', 'SGA_v2.0_scaffold90G27888' => 'sas', 'SHI08601' => 'shi', 'SHI08606' => 'shi', 'SHI17117' => 'shi', 'SHI17119' => 'shi', 'SMO118G0201' => 'smo', 'SMO169G0247' => 'smo', 'SMO176G0006' => 'smo', 'SMO176G0015' => 'smo', 'SMO202G0006' => 'smo', 'SMO240G0050' => 'smo', 'SMO286G0009' => 'smo', 'SMO338G0033' => 'smo', 'SMO356G0533' => 'smo', 'SMO364G0382' => 'smo', 'SMO367G0166' => 'smo', 'SMO367G1098' => 'smo', 'Solyc01g009920.3' => 'sly', 'Solyc01g099300.3' => 'sly', 'Solyc02g084700.3' => 'sly', 'Solyc03g097520.3' => 'sly', 'Solyc06g071580.3' => 'sly', 'Solyc10g081760.3' => 'sly', 'Sopen01g005480' => 'spe', 'Sopen01g042850' => 'spe', 'Sopen02g029370' => 'spe', 'Sopen03g028280' => 'spe', 'Sopen06g027870' => 'spe', 'Sopen10g032270' => 'spe', 'Sp5g18180' => 'spa', 'Sp6g12880' => 'spa', 'Sp6g30850' => 'spa', 'Sp7g22960' => 'spa', 'Sp7g34010' => 'spa', 'SpUn1326_0010' => 'spa', 'TAR371G0242' => 'tar', 'TAR622G0638' => 'tar', 'TAR628G1548' => 'tar', 'TAR629G1079' => 'tar', 'TAR629G3413' => 'tar', 'THA.LOC104804249' => 'tha', 'THA.LOC104808315' => 'tha', 'THA.LOC104809238' => 'tha', 'THA.LOC104825484' => 'tha', 'Thecc.01G025500' => 'tca', 'Thecc.03G015800' => 'tca', 'Thecc.03G018000' => 'tca', 'Thecc.03G134800' => 'tca', 'Thecc.04G014700' => 'tca', 'Thhalv10006991m.g' => 'esa', 'Thhalv10012707m.g' => 'esa', 'Thhalv10015739m.g' => 'esa', 'Thhalv10024553m.g' => 'esa', 'Thhalv10024673m.g' => 'esa', 'Thhalv10029187m.g' => 'esa', 'TPR.G12971' => 'tpr', 'TPR.G29396' => 'tpr', 'TPR.G33376' => 'tpr', 'TPR.G35508' => 'tpr', 'TPR.G35516' => 'tpr', 'TPR.G37317' => 'tpr', 'TPR.G37389' => 'tpr', 'TPR.G37523' => 'tpr', 'TPR.G559' => 'tpr', 'TWI14G0070' => 'twi', 'TWI14G0729' => 'twi', 'TWI18G0596' => 'twi', 'TWI39G0780' => 'twi', 'TWI39G0850' => 'twi', 'TWI73G1052' => 'twi', 'unitig_52.g17485' => 'ugi', 'unitig_61.g26355' => 'ugi', 'vmacro01040' => 'vma', 'vmacro16731' => 'vma', 'vmacro18270' => 'vma', 'vmacro19142' => 'vma', 'vmacro19407' => 'vma', 'vmacro19408' => 'vma', 'vmacro21899' => 'vma', 'vmacro21900' => 'vma', 'vmacro21901' => 'vma', 'VMungo0251G0490' => 'vmu', 'VMungo0251G1748' => 'vmu', 'VMungo1309G0421' => 'vmu', 'Zm00001eb086500' => 'zma', 'Zm00001eb150680' => 'zma', 'Zm00001eb162330' => 'zma', 'Zm00001eb203130' => 'zma', 'Zm00001eb369480' => 'zma', 'Zm00001eb382340' => 'zma', 'Zm00001eb416360' => 'zma' ), 'gf_id' => 'HOM05D000902', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000902' ), 'data_identifier' => 'HOM05D000902', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000902', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '663', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02470' => 'bna', 'A01p16260' => 'bna', 'A02p01680' => 'bna', 'A03p16600' => 'bna', 'A03p55660' => 'bna', 'A03p64160' => 'bna', 'A03p64170' => 'bna', 'A08p31900' => 'bna', 'A09p59530' => 'bna', 'A10p08230' => 'bna', 'A10p25090' => 'bna', 'Aa31LG3G7100' => 'aar', 'Aa31LG3G7110' => 'aar', 'Aa31LG6G13160' => 'aar', 'Aa31LG7G10770' => 'aar', 'Aa31LG7G3830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2723' => 'aag', 'Actinidia08045' => 'ach', 'Actinidia08888' => 'ach', 'Actinidia18333' => 'ach', 'Actinidia19334' => 'ach', 'Actinidia25552' => 'ach', 'Actinidia26089' => 'ach', 'Actinidia30615' => 'ach', 'Actinidia30616' => 'ach', 'Actinidia33083' => 'ach', 'Actinidia35762' => 'ach', 'Ah.02g110620' => 'amhyb', 'Ah.11g046390' => 'amhyb', 'AL1G31670' => 'aly', 'AL6G23730' => 'aly', 'AL7G14740' => 'aly', 'AL7G14750' => 'aly', 'AL7G14760' => 'aly', 'AL7G28220' => 'aly', 'AL8G24940' => 'aly', 'Aqoxy3G01665' => 'aox', 'Aqoxy3G02853' => 'aox', 'Aqoxy5G01513' => 'aox', 'Aqoxy5G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8SKA4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ75LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKDA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0LJZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7REX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZP4YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWX7I5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2QKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS0L9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPCD8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q161UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC7XCF' => 'arhy', 'AT1G19100' => 'ath', 'AT4G24970' => 'ath', 'AT4G36270' => 'ath', 'AT4G36280' => 'ath', 'AT4G36290' => 'ath', 'AT5G13130' => 'ath', 'AT5G50780' => 'ath', 'ATR0582G266' => 'atr', 'ATR0661G195' => 'atr', 'ATR1152G031' => 'atr', 'Atru.chr11.2382' => 'acertr', 'Atru.chr12.2337' => 'acertr', 'Atru.chr3.744' => 'acertr', 'Atru.chr6.1870' => 'acertr', 'Atru.chr9.2515' => 'acertr', 'AUR62004120' => 'cqu', 'AUR62005667' => 'cqu', 'AUR62007634' => 'cqu', 'AUR62008186' => 'cqu', 'AUR62008187' => 'cqu', 'AUR62008188' => 'cqu', 'AUR62027954' => 'cqu', 'AUR62028766' => 'cqu', 'AUR62028767' => 'cqu', 'AUR62028768' => 'cqu', 'AUR62028886' => 'cqu', 'AUR62029563' => 'cqu', 'AUR62038832' => 'cqu', 'BcaB01g04149' => 'bca', 'BcaB03g12940' => 'bca', 'BcaB03g13090' => 'bca', 'BcaB03g14466' => 'bca', 'BcaB05g24035' => 'bca', 'BcaC01g06050' => 'bca', 'BcaC04g19148' => 'bca', 'BcaC04g20761' => 'bca', 'BcaC06g32845' => 'bca', 'BcaC07g41274' => 'bca', 'BcaC09g50827' => 'bca', 'BcaNung00741' => 'bca', 'BcaNung00742' => 'bca', 'BcaNung01859' => 'bca', 'BcaNung03985' => 'bca', 'BcaNung03989' => 'bca', 'BcaNung05661' => 'bca', 'BolC1t00257H' => 'bol', 'BolC1t01956H' => 'bol', 'BolC2t06534H' => 'bol', 'BolC3t14334H' => 'bol', 'BolC5t30451H' => 'bol', 'BolC7t45880H' => 'bol', 'BolC7t46586H' => 'bol', 'BolC8t49301H' => 'bol', 'BolC8t51837H' => 'bol', 'BolC9t56822H' => 'bol', 'BolC9t59235H' => 'bol', 'BraA01t00234Z' => 'bra', 'BraA01t01563Z' => 'bra', 'BraA02t05147Z' => 'bra', 'BraA03t10947Z' => 'bra', 'BraA03t14633Z' => 'bra', 'BraA08t35112Z' => 'bra', 'BraA09t41330Z' => 'bra', 'BraA10t44570Z' => 'bra', 'C01p02670' => 'bna', 'C01p20260' => 'bna', 'C02p05890' => 'bna', 'C03p19530' => 'bna', 'C05p17470' => 'bna', 'C07p53900' => 'bna', 'C07p61630' => 'bna', 'C08p16800' => 'bna', 'C08p42810' => 'bna', 'C09p39480' => 'bna', 'C09p63980' => 'bna', 'CAN.G1001.7' => 'can', 'CAN.G1034.55' => 'can', 'CAN.G143.7' => 'can', 'CAN.G3340.1' => 'can', 'CAN.G358.19' => 'can', 'CAN.G373.2' => 'can', 'CAN.G674.16' => 'can', 'CAN.G674.17' => 'can', 'CAN.G674.18' => 'can', 'CAN.G732.2' => 'can', 'CAN.G732.3' => 'can', 'CAN.G993.39' => 'can', 'CANSAT01G2052' => 'cansat', 'CANSAT80G0070' => 'cansat', 'CANSAT80G0483' => 'cansat', 'CANSAT80G0625' => 'cansat', 'CARHR019690' => 'chi', 'CARHR080280' => 'chi', 'CARHR152750' => 'chi', 'CARHR152760' => 'chi', 'CARHR152770' => 'chi', 'CARHR200340' => 'chi', 'CARHR232370' => 'chi', 'CARHR244670' => 'chi', 'CARHR244680' => 'chi', 'CARHR257520' => 'chi', 'Carub.0001s1872' => 'cru', 'Carub.0006s1130' => 'cru', 'Carub.0007s0396' => 'cru', 'Carub.0007s0397' => 'cru', 'Carub.0007s1608' => 'cru', 'Carub.0008s1068' => 'cru', 'Carub.0008s1077' => 'cru', 'Ca_16158_v3' => 'car', 'Ca_17571_v3' => 'car', 'Ca_21936_v3' => 'car', 'Ca_22350_v3' => 'car', 'CBR_g22445' => 'cbr', 'CBR_g26290' => 'cbr', 'Cc04_g09610' => 'ccan', 'Cc04_g12280' => 'ccan', 'Cc07_g10230' => 'ccan', 'CDE02G0093' => 'cde', 'CDE02G0701' => 'cde', 'CDE04G1050' => 'cde', 'CDE05G1833' => 'cde', 'CDE05G3058' => 'cde', 'CDE05G3380' => 'cde', 'CDE06G0536' => 'cde', 'Cfa006923' => 'cfa', 'Cfa009402' => 'cfa', 'Cfa018751' => 'cfa', 'Cfa019164' => 'cfa', 'Cfa022935' => 'cfa', 'Ciclev10019081m.g' => 'ccl', 'Ciclev10025076m.g' => 'ccl', 'Ciclev10030712m.g' => 'ccl', 'Ciclev10033760m.g' => 'ccl', 'CiPaw.05G105600' => 'cil', 'CiPaw.08G136700' => 'cil', 'CiPaw.11G003900' => 'cil', 'CiPaw.11G023700' => 'cil', 'CiPaw.12G003700' => 'cil', 'ClCG06G017100' => 'cla', 'ClCG06G018110' => 'cla', 'ClCG07G008800' => 'cla', 'ClCG07G015330' => 'cla', 'COL.COLO4_13698' => 'col', 'COL.COLO4_16659' => 'col', 'COL.COLO4_21986' => 'col', 'COL.COLO4_24049' => 'col', 'COL.COLO4_29061' => 'col', 'COL.COLO4_29075' => 'col', 'COL.COLO4_30094' => 'col', 'Cpa.g.c33689' => 'cpa', 'Cpa.g.sc108.39' => 'cpa', 'Cpa.g.sc108.41' => 'cpa', 'Cpa.g.sc1163.1' => 'cpa', 'Cpa.g.sc4.155' => 'cpa', 'Cpa.g.sc6.194' => 'cpa', 'CsaV3_1G000340' => 'csa', 'CsaV3_1G001400' => 'csa', 'CsaV3_4G002220' => 'csa', 'CsaV3_4G005370' => 'csa', 'CSS0007487' => 'camsi', 'CSS0008066' => 'camsi', 'CSS0009120' => 'camsi', 'CSS0015512' => 'camsi', 'CSS0022409' => 'camsi', 'CSS0025358' => 'camsi', 'CSS0044547' => 'camsi', 'DCAR_013057' => 'dca', 'DCAR_015058' => 'dca', 'DCAR_016027' => 'dca', 'DCAR_017327' => 'dca', 'DCAR_020743' => 'dca', 'DCAR_026157' => 'dca', 'DCAR_032339' => 'dca', 'DCAR_032340' => 'dca', 'Dinv11200' => 'din', 'Dinv11201' => 'din', 'Dinv20631' => 'din', 'Dinv23182' => 'din', 'Dinv33466' => 'din', 'Dinv33583' => 'din', 'Dinv38565' => 'din', 'Duzib068G0200' => 'dzi', 'Duzib147G0132' => 'dzi', 'Duzib147G0635' => 'dzi', 'Duzib205G1670' => 'dzi', 'Duzib251G0606' => 'dzi', 'ECA232G3336' => 'eca', 'ECA232G3763' => 'eca', 'ECA232G4845' => 'eca', 'ECA234G1607' => 'eca', 'ECA246G0932' => 'eca', 'ECA247G0781' => 'eca', 'ECA247G1932' => 'eca', 'ECA247G2079' => 'eca', 'ECA247G3338' => 'eca', 'ECA247G4115' => 'eca', 'EL10Ac3g06552' => 'bvu', 'EL10Ac5g10721' => 'bvu', 'EL10Ac5g10722' => 'bvu', 'EL10Ac5g10723' => 'bvu', 'EL10Ac5g11361' => 'bvu', 'EL10Ac6g13553' => 'bvu', 'EL10As8g23872' => 'bvu', 'Eucgr.B00250' => 'egr', 'Eucgr.B00251' => 'egr', 'Eucgr.B03533' => 'egr', 'Eucgr.I02381' => 'egr', 'Eucgr.K02700' => 'egr', 'FAN02G0174' => 'fan', 'FAN02G3146' => 'fan', 'FAN04G1672' => 'fan', 'FAN04G2273' => 'fan', 'FAN05G2791' => 'fan', 'FAN05G4035' => 'fan', 'FAN07G0834' => 'fan', 'FAN08G1198' => 'fan', 'FAN09G4182' => 'fan', 'FAN12G0496' => 'fan', 'FAN13G1027' => 'fan', 'FAN13G2951' => 'fan', 'FAN14G0705' => 'fan', 'FAN14G0720' => 'fan', 'FAN17G0201' => 'fan', 'FAN17G2665' => 'fan', 'FAN18G1456' => 'fan', 'FAN18G1525' => 'fan', 'FAN18G3500' => 'fan', 'FAN28G2670' => 'fan', 'FvH4_1g12391' => 'fve', 'FvH4_4g23220' => 'fve', 'FvH4_5g08810' => 'fve', 'FvH4_5g28960' => 'fve', 'FvH4_6g42820' => 'fve', 'FvH4_6g51110' => 'fve', 'Glyma.02G051802' => 'gma', 'Glyma.04G185300' => 'gma', 'Glyma.05G202900' => 'gma', 'Glyma.08G010300' => 'gma', 'Glyma.16G131900' => 'gma', 'Glyma.17G087900' => 'gma', 'Gohir.A07G048600' => 'ghi', 'Gohir.A11G179000' => 'ghi', 'Gohir.A12G140900' => 'ghi', 'Gohir.A12G140950' => 'ghi', 'Gohir.A12G191700' => 'ghi', 'Gohir.A13G086300' => 'ghi', 'Gohir.D07G052900' => 'ghi', 'Gohir.D11G186600' => 'ghi', 'Gohir.D12G145575' => 'ghi', 'Gohir.D12G145650' => 'ghi', 'Gohir.D12G145725' => 'ghi', 'Gohir.D12G194050' => 'ghi', 'Gohir.D13G091800' => 'ghi', 'Gorai.001G055900' => 'gra', 'Gorai.007G198400' => 'gra', 'Gorai.008G157000' => 'gra', 'Gorai.008G157100' => 'gra', 'Gorai.008G208700' => 'gra', 'Gorai.010G138700' => 'gra', 'GSVIVG01000977001' => 'vvi', 'GSVIVG01007708001' => 'vvi', 'GSVIVG01008587001' => 'vvi', 'GSVIVG01018849001' => 'vvi', 'GSVIVG01032432001' => 'vvi', 'HanXRQChr02g0034131' => 'han', 'HanXRQChr02g0035981' => 'han', 'HanXRQChr02g0035991' => 'han', 'HanXRQChr05g0155611' => 'han', 'HanXRQChr05g0155621' => 'han', 'HanXRQChr08g0236501' => 'han', 'HanXRQChr09g0261321' => 'han', 'HanXRQChr09g0272081' => 'han', 'HanXRQChr10g0310741' => 'han', 'HanXRQChr11g0325591' => 'han', 'HanXRQChr12g0385691' => 'han', 'HanXRQChr13g0387801' => 'han', 'HanXRQChr15g0463011' => 'han', 'Haze_03826' => 'cav', 'Haze_03827' => 'cav', 'Haze_07183' => 'cav', 'Haze_07537' => 'cav', 'Haze_07539' => 'cav', 'Haze_12461' => 'cav', 'Haze_16115' => 'cav', 'Haze_16808' => 'cav', 'Haze_18531' => 'cav', 'Hma1.2p1_0046F.1_g026700' => 'hma', 'Hma1.2p1_0046F.1_g026710' => 'hma', 'Hma1.2p1_0168F.1_g074340' => 'hma', 'Hma1.2p1_0266F.1_g107030' => 'hma', 'Hma1.2p1_0266F.1_g107060' => 'hma', 'Hma1.2p1_0275F.1_g110510' => 'hma', 'Hma1.2p1_0592F.1_g185490' => 'hma', 'Hma1.2p1_0592F.1_g185500' => 'hma', 'Hma1.2p1_0592F.1_g185510' => 'hma', 'Hma1.2p1_0592F.1_g185520' => 'hma', 'Hma1.2p1_0592F.1_g185530' => 'hma', 'Hma1.2p1_0818F.1_g223450' => 'hma', 'HPP92_009708' => 'vpl', 'HPP92_009793' => 'vpl', 'HPP92_009796' => 'vpl', 'HPP92_009797' => 'vpl', 'HPP92_014940' => 'vpl', 'HPP92_014988' => 'vpl', 'Hund02463' => 'sun', 'Hund02760' => 'sun', 'Hund05071' => 'sun', 'Hund10108' => 'sun', 'Hund11204' => 'sun', 'Hund14016' => 'sun', 'Hund16464' => 'sun', 'Lalb_Chr09g0333391' => 'lal', 'Lalb_Chr11g0070461' => 'lal', 'Lalb_Chr12g0201671' => 'lal', 'Lalb_Chr13g0297161' => 'lal', 'Lj1g0002823' => 'lja', 'Lj3C1074T6' => 'lonja', 'Lj4A212T28' => 'lonja', 'Lj4g0005516' => 'lja', 'Lj4g0013705' => 'lja', 'Lj4g0027865' => 'lja', 'Lj5C92G16' => 'lonja', 'Lj5C92T12' => 'lonja', 'Lj7C596T3' => 'lonja', 'Lj9A446G59' => 'lonja', 'Lj9A482G21' => 'lonja', 'Lsat_1_v5_gn_1_28261' => 'lsa', 'Lsat_1_v5_gn_1_28281' => 'lsa', 'Lsat_1_v5_gn_1_32721' => 'lsa', 'Lsat_1_v5_gn_4_151760' => 'lsa', 'Lsat_1_v5_gn_4_2120' => 'lsa', 'Lsat_1_v5_gn_4_75761' => 'lsa', 'Lsat_1_v5_gn_5_10920' => 'lsa', 'Manes.02G099900' => 'mes', 'Manes.11G096200' => 'mes', 'Manes.12G007200' => 'mes', 'Manes.14G048300' => 'mes', 'Manes.17G114700' => 'mes', 'Mapoly0002s0070' => 'mpo', 'Mapoly0029s0099' => 'mpo', 'MBI07_g24742_MAGBIO' => 'mbi', 'MBI10_g27988_MAGBIO' => 'mbi', 'MBI11_g13057_MAGBIO' => 'mbi', 'MD02G1137200' => 'mdo', 'MD06G1137200' => 'mdo', 'MD07G1122300' => 'mdo', 'MD09G1078200' => 'mdo', 'MD13G1123700' => 'mdo', 'MD14G1151900' => 'mdo', 'MD17G1030900' => 'mdo', 'MD17G1068200' => 'mdo', 'MD17G1068600' => 'mdo', 'Medtr3g077540' => 'mtr', 'Medtr4g105530' => 'mtr', 'Medtr8g076580' => 'mtr', 'Medtr8g076590' => 'mtr', 'Medtr8g096410' => 'mtr', 'MELO3C016411.2' => 'cme', 'MELO3C017780.2' => 'cme', 'MELO3C022560.2' => 'cme', 'MELO3C026187.2' => 'cme', 'MELO3C026286.2' => 'cme', 'MELO3C032854.2' => 'cme', 'Migut.H02495' => 'egut', 'Migut.I00561' => 'egut', 'Migut.K01015' => 'egut', 'Migut.K01016' => 'egut', 'Migut.L00743' => 'egut', 'Migut.L00744' => 'egut', 'Migut.L00746' => 'egut', 'Migut.L00798' => 'egut', 'Migut.L00799' => 'egut', 'Migut.N02096' => 'egut', 'MSTRG.11259' => 'ama', 'MSTRG.23142' => 'ama', 'MSTRG.2499' => 'ama', 'Nitab4.5_0000003g0730' => 'nta', 'Nitab4.5_0000137g0020' => 'nta', 'Nitab4.5_0000721g0210' => 'nta', 'Nitab4.5_0000723g0050' => 'nta', 'Nitab4.5_0000913g0070' => 'nta', 'Nitab4.5_0001332g0040' => 'nta', 'Nitab4.5_0001771g0050' => 'nta', 'Nitab4.5_0001918g0050' => 'nta', 'Nitab4.5_0002686g0030' => 'nta', 'Nitab4.5_0003156g0020' => 'nta', 'Nitab4.5_0003383g0040' => 'nta', 'Nitab4.5_0003918g0010' => 'nta', 'Nitab4.5_0006760g0010' => 'nta', 'Nn1g05981' => 'nnu', 'Nn1g06288' => 'nnu', 'Nn3g16371' => 'nnu', 'Nn3g16786' => 'nnu', 'Nn4g22232' => 'nnu', 'Oeu005144.1' => 'oeu', 'Oeu005145.1' => 'oeu', 'Oeu011348.1' => 'oeu', 'Oeu016415.1' => 'oeu', 'Oeu023501.1' => 'oeu', 'Oeu044473.1' => 'oeu', 'Oeu048892.2' => 'oeu', 'Os01g0549200' => 'osa', 'Os02g0469300' => 'osa', 'Os04g0311100' => 'osa', 'Os06g0474900' => 'osa', 'Os10g0181700' => 'osa', 'Os11g0454800' => 'osa', 'Peaxi162Scf00037g00714' => 'pax', 'Peaxi162Scf00084g01217' => 'pax', 'Peaxi162Scf00257g00217' => 'pax', 'Peaxi162Scf00516g00215' => 'pax', 'Peaxi162Scf00689g00123' => 'pax', 'PGR044G2719' => 'pgr', 'PGR083G1360' => 'pgr', 'PGR102G2849' => 'pgr', 'PGR119G2534' => 'pgr', 'PGSC0003DMG400003538' => 'stu', 'PGSC0003DMG400028138' => 'stu', 'PGSC0003DMG400031732' => 'stu', 'PGSC0003DMG400038165' => 'stu', 'Phvul.002G284600' => 'pvu', 'Phvul.003G258200' => 'pvu', 'Phvul.009G176500' => 'pvu', 'Potri.003G167201' => 'ptr', 'Potri.005G118400' => 'ptr', 'Potri.012G089000' => 'ptr', 'Potri.012G102800' => 'ptr', 'Potri.015G079400' => 'ptr', 'Potri.015G100900' => 'ptr', 'Pp3c14_9810' => 'ppa', 'Pp3c15_10450' => 'ppa', 'Pp3c20_19150' => 'ppa', 'Pp3c23_12740' => 'ppa', 'Pp3c23_6310' => 'ppa', 'Pp3c24_3720' => 'ppa', 'Pp3c27_2580' => 'ppa', 'Pp3c9_8990' => 'ppa', 'PRCOL_00002854' => 'pco', 'Prupe.1G221200' => 'ppe', 'Prupe.3G289000' => 'ppe', 'Prupe.5G147000' => 'ppe', 'Prupe.6G157300' => 'ppe', 'Prupe.7G163400' => 'ppe', 'Psat0s2177g0040' => 'psa', 'Psat3g174760' => 'psa', 'Psat3g192160' => 'psa', 'Psat4g058520' => 'psa', 'Psat4g096840' => 'psa', 'Psat7g037320' => 'psa', 'PSO017G1274' => 'pso', 'PSO017G5166' => 'pso', 'PSO063G4558' => 'pso', 'PSO170G4458' => 'pso', 'PSO170G5005' => 'pso', 'PSO210G6156' => 'pso', 'PSO210G6635' => 'pso', 'PSO210G7397' => 'pso', 'PSO210G7700' => 'pso', 'PSO455G0035' => 'pso', 'PSO455G0180' => 'pso', 'PSO478G4515' => 'pso', 'PSO832G1305' => 'pso', 'PSO832G3489' => 'pso', 'QL02p075247' => 'qlo', 'QL03p051148' => 'qlo', 'QL05p010313' => 'qlo', 'QL06p034627' => 'qlo', 'QL10p001889' => 'qlo', 'QL10p010846' => 'qlo', 'RcHm_v2.0_Chr1g0350621' => 'rch', 'RcHm_v2.0_Chr1g0350641' => 'rch', 'RcHm_v2.0_Chr2g0092891' => 'rch', 'RcHm_v2.0_Chr2g0100251' => 'rch', 'RcHm_v2.0_Chr2g0158661' => 'rch', 'RcHm_v2.0_Chr2g0172741' => 'rch', 'RcHm_v2.0_Chr4g0429571' => 'rch', 'RcHm_v2.0_Chr5g0042471' => 'rch', 'RcHm_v2.0_Chr7g0189451' => 'rch', 'Rhsim08G0052000' => 'rsi', 'Rhsim08G0174400' => 'rsi', 'Rhsim08G0193200' => 'rsi', 'Rhsim10G0214800' => 'rsi', 'Rhsim10G0214900' => 'rsi', 'Rhsim10G0215000' => 'rsi', 'Rhsim12G0022900' => 'rsi', 'Rhsim12G0177500' => 'rsi', 'Rhsim12G0177700' => 'rsi', 'Sabra03G0122600' => 'sbr', 'Sabra05G0097400' => 'sbr', 'Sabra12G0064100' => 'sbr', 'Sabra15G0121300' => 'sbr', 'SalBow2G0642' => 'sbo', 'SalBow5G2667' => 'sbo', 'SalBow5G4873' => 'sbo', 'SalBow8G2395' => 'sbo', 'Sc03g0003290' => 'sci', 'Sc10g0010130' => 'sci', 'Sc22g0003650' => 'sci', 'Sed0001603' => 'sed', 'Sed0004259' => 'sed', 'Sed0006789' => 'sed', 'Sed0011838' => 'sed', 'Sed0012964' => 'sed', 'Sed0016383' => 'sed', 'Sed0019010' => 'sed', 'Sed0020188' => 'sed', 'SEGI_04702' => 'sgi', 'SEGI_17231' => 'sgi', 'SEGI_18877' => 'sgi', 'SEGI_25196' => 'sgi', 'SEGI_25515' => 'sgi', 'SEGI_28445' => 'sgi', 'SEGI_37452' => 'sgi', 'SGA_v2.0_scaffold188G40336' => 'sas', 'SGA_v2.0_scaffold228G43247' => 'sas', 'SGA_v2.0_scaffold280G46853' => 'sas', 'SGA_v2.0_scaffold34G13808' => 'sas', 'SGA_v2.0_scaffold40G15576' => 'sas', 'SGA_v2.0_scaffold611G53188' => 'sas', 'SGA_v2.0_scaffold78G25461' => 'sas', 'SGA_v2.0_scaffold90G27888' => 'sas', 'SHI08601' => 'shi', 'SHI08606' => 'shi', 'SHI17117' => 'shi', 'SHI17119' => 'shi', 'SMO118G0201' => 'smo', 'SMO169G0247' => 'smo', 'SMO176G0006' => 'smo', 'SMO176G0015' => 'smo', 'SMO202G0006' => 'smo', 'SMO240G0050' => 'smo', 'SMO286G0009' => 'smo', 'SMO338G0033' => 'smo', 'SMO356G0533' => 'smo', 'SMO364G0382' => 'smo', 'SMO367G0166' => 'smo', 'SMO367G1098' => 'smo', 'Solyc01g009920.3' => 'sly', 'Solyc01g099300.3' => 'sly', 'Solyc02g084700.3' => 'sly', 'Solyc03g097520.3' => 'sly', 'Solyc06g071580.3' => 'sly', 'Solyc10g081760.3' => 'sly', 'Sopen01g005480' => 'spe', 'Sopen01g042850' => 'spe', 'Sopen02g029370' => 'spe', 'Sopen03g028280' => 'spe', 'Sopen06g027870' => 'spe', 'Sopen10g032270' => 'spe', 'Sp5g18180' => 'spa', 'Sp6g12880' => 'spa', 'Sp6g30850' => 'spa', 'Sp7g22960' => 'spa', 'Sp7g34010' => 'spa', 'SpUn1326_0010' => 'spa', 'TAR371G0242' => 'tar', 'TAR622G0638' => 'tar', 'TAR628G1548' => 'tar', 'TAR629G1079' => 'tar', 'TAR629G3413' => 'tar', 'THA.LOC104804249' => 'tha', 'THA.LOC104808315' => 'tha', 'THA.LOC104809238' => 'tha', 'THA.LOC104825484' => 'tha', 'Thecc.01G025500' => 'tca', 'Thecc.03G015800' => 'tca', 'Thecc.03G018000' => 'tca', 'Thecc.03G134800' => 'tca', 'Thecc.04G014700' => 'tca', 'Thhalv10006991m.g' => 'esa', 'Thhalv10012707m.g' => 'esa', 'Thhalv10015739m.g' => 'esa', 'Thhalv10024553m.g' => 'esa', 'Thhalv10024673m.g' => 'esa', 'Thhalv10029187m.g' => 'esa', 'TPR.G12971' => 'tpr', 'TPR.G29396' => 'tpr', 'TPR.G33376' => 'tpr', 'TPR.G35508' => 'tpr', 'TPR.G35516' => 'tpr', 'TPR.G37317' => 'tpr', 'TPR.G37389' => 'tpr', 'TPR.G37523' => 'tpr', 'TPR.G559' => 'tpr', 'TWI14G0070' => 'twi', 'TWI14G0729' => 'twi', 'TWI18G0596' => 'twi', 'TWI39G0780' => 'twi', 'TWI39G0850' => 'twi', 'TWI73G1052' => 'twi', 'unitig_52.g17485' => 'ugi', 'unitig_61.g26355' => 'ugi', 'vmacro01040' => 'vma', 'vmacro16731' => 'vma', 'vmacro18270' => 'vma', 'vmacro19142' => 'vma', 'vmacro19407' => 'vma', 'vmacro19408' => 'vma', 'vmacro21899' => 'vma', 'vmacro21900' => 'vma', 'vmacro21901' => 'vma', 'VMungo0251G0490' => 'vmu', 'VMungo0251G1748' => 'vmu', 'VMungo1309G0421' => 'vmu', 'Zm00001eb086500' => 'zma', 'Zm00001eb150680' => 'zma', 'Zm00001eb162330' => 'zma', 'Zm00001eb203130' => 'zma', 'Zm00001eb369480' => 'zma', 'Zm00001eb382340' => 'zma', 'Zm00001eb416360' => 'zma' ) $gf_id = 'HOM05D000902' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000902' ) $data_identifier = 'HOM05D000902' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 13, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 10, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 6, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 9, 'hma' => (int) 12, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 4, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 6, 'ppa' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 6, 'rch' => (int) 9, 'rsi' => (int) 9, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 12, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 3, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416360' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000902', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '663', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02470' => 'bna', 'A01p16260' => 'bna', 'A02p01680' => 'bna', 'A03p16600' => 'bna', 'A03p55660' => 'bna', 'A03p64160' => 'bna', 'A03p64170' => 'bna', 'A08p31900' => 'bna', 'A09p59530' => 'bna', 'A10p08230' => 'bna', 'A10p25090' => 'bna', 'Aa31LG3G7100' => 'aar', 'Aa31LG3G7110' => 'aar', 'Aa31LG6G13160' => 'aar', 'Aa31LG7G10770' => 'aar', 'Aa31LG7G3830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2723' => 'aag', 'Actinidia08045' => 'ach', 'Actinidia08888' => 'ach', 'Actinidia18333' => 'ach', 'Actinidia19334' => 'ach', 'Actinidia25552' => 'ach', 'Actinidia26089' => 'ach', 'Actinidia30615' => 'ach', 'Actinidia30616' => 'ach', 'Actinidia33083' => 'ach', 'Actinidia35762' => 'ach', 'Ah.02g110620' => 'amhyb', 'Ah.11g046390' => 'amhyb', 'AL1G31670' => 'aly', 'AL6G23730' => 'aly', 'AL7G14740' => 'aly', 'AL7G14750' => 'aly', 'AL7G14760' => 'aly', 'AL7G28220' => 'aly', 'AL8G24940' => 'aly', 'Aqoxy3G01665' => 'aox', 'Aqoxy3G02853' => 'aox', 'Aqoxy5G01513' => 'aox', 'Aqoxy5G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8SKA4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ75LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKDA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0LJZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7REX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZP4YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWX7I5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2QKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS0L9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPCD8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q161UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC7XCF' => 'arhy', 'AT1G19100' => 'ath', 'AT4G24970' => 'ath', 'AT4G36270' => 'ath', 'AT4G36280' => 'ath', 'AT4G36290' => 'ath', 'AT5G13130' => 'ath', 'AT5G50780' => 'ath', 'ATR0582G266' => 'atr', 'ATR0661G195' => 'atr', 'ATR1152G031' => 'atr', 'Atru.chr11.2382' => 'acertr', 'Atru.chr12.2337' => 'acertr', 'Atru.chr3.744' => 'acertr', 'Atru.chr6.1870' => 'acertr', 'Atru.chr9.2515' => 'acertr', 'AUR62004120' => 'cqu', 'AUR62005667' => 'cqu', 'AUR62007634' => 'cqu', 'AUR62008186' => 'cqu', 'AUR62008187' => 'cqu', 'AUR62008188' => 'cqu', 'AUR62027954' => 'cqu', 'AUR62028766' => 'cqu', 'AUR62028767' => 'cqu', 'AUR62028768' => 'cqu', 'AUR62028886' => 'cqu', 'AUR62029563' => 'cqu', 'AUR62038832' => 'cqu', 'BcaB01g04149' => 'bca', 'BcaB03g12940' => 'bca', 'BcaB03g13090' => 'bca', 'BcaB03g14466' => 'bca', 'BcaB05g24035' => 'bca', 'BcaC01g06050' => 'bca', 'BcaC04g19148' => 'bca', 'BcaC04g20761' => 'bca', 'BcaC06g32845' => 'bca', 'BcaC07g41274' => 'bca', 'BcaC09g50827' => 'bca', 'BcaNung00741' => 'bca', 'BcaNung00742' => 'bca', 'BcaNung01859' => 'bca', 'BcaNung03985' => 'bca', 'BcaNung03989' => 'bca', 'BcaNung05661' => 'bca', 'BolC1t00257H' => 'bol', 'BolC1t01956H' => 'bol', 'BolC2t06534H' => 'bol', 'BolC3t14334H' => 'bol', 'BolC5t30451H' => 'bol', 'BolC7t45880H' => 'bol', 'BolC7t46586H' => 'bol', 'BolC8t49301H' => 'bol', 'BolC8t51837H' => 'bol', 'BolC9t56822H' => 'bol', 'BolC9t59235H' => 'bol', 'BraA01t00234Z' => 'bra', 'BraA01t01563Z' => 'bra', 'BraA02t05147Z' => 'bra', 'BraA03t10947Z' => 'bra', 'BraA03t14633Z' => 'bra', 'BraA08t35112Z' => 'bra', 'BraA09t41330Z' => 'bra', 'BraA10t44570Z' => 'bra', 'C01p02670' => 'bna', 'C01p20260' => 'bna', 'C02p05890' => 'bna', 'C03p19530' => 'bna', 'C05p17470' => 'bna', 'C07p53900' => 'bna', 'C07p61630' => 'bna', 'C08p16800' => 'bna', 'C08p42810' => 'bna', 'C09p39480' => 'bna', 'C09p63980' => 'bna', 'CAN.G1001.7' => 'can', 'CAN.G1034.55' => 'can', 'CAN.G143.7' => 'can', 'CAN.G3340.1' => 'can', 'CAN.G358.19' => 'can', 'CAN.G373.2' => 'can', 'CAN.G674.16' => 'can', 'CAN.G674.17' => 'can', 'CAN.G674.18' => 'can', 'CAN.G732.2' => 'can', 'CAN.G732.3' => 'can', 'CAN.G993.39' => 'can', 'CANSAT01G2052' => 'cansat', 'CANSAT80G0070' => 'cansat', 'CANSAT80G0483' => 'cansat', 'CANSAT80G0625' => 'cansat', 'CARHR019690' => 'chi', 'CARHR080280' => 'chi', 'CARHR152750' => 'chi', 'CARHR152760' => 'chi', 'CARHR152770' => 'chi', 'CARHR200340' => 'chi', 'CARHR232370' => 'chi', 'CARHR244670' => 'chi', 'CARHR244680' => 'chi', 'CARHR257520' => 'chi', 'Carub.0001s1872' => 'cru', 'Carub.0006s1130' => 'cru', 'Carub.0007s0396' => 'cru', 'Carub.0007s0397' => 'cru', 'Carub.0007s1608' => 'cru', 'Carub.0008s1068' => 'cru', 'Carub.0008s1077' => 'cru', 'Ca_16158_v3' => 'car', 'Ca_17571_v3' => 'car', 'Ca_21936_v3' => 'car', 'Ca_22350_v3' => 'car', 'CBR_g22445' => 'cbr', 'CBR_g26290' => 'cbr', 'Cc04_g09610' => 'ccan', 'Cc04_g12280' => 'ccan', 'Cc07_g10230' => 'ccan', 'CDE02G0093' => 'cde', 'CDE02G0701' => 'cde', 'CDE04G1050' => 'cde', 'CDE05G1833' => 'cde', 'CDE05G3058' => 'cde', 'CDE05G3380' => 'cde', 'CDE06G0536' => 'cde', 'Cfa006923' => 'cfa', 'Cfa009402' => 'cfa', 'Cfa018751' => 'cfa', 'Cfa019164' => 'cfa', 'Cfa022935' => 'cfa', 'Ciclev10019081m.g' => 'ccl', 'Ciclev10025076m.g' => 'ccl', 'Ciclev10030712m.g' => 'ccl', 'Ciclev10033760m.g' => 'ccl', 'CiPaw.05G105600' => 'cil', 'CiPaw.08G136700' => 'cil', 'CiPaw.11G003900' => 'cil', 'CiPaw.11G023700' => 'cil', 'CiPaw.12G003700' => 'cil', 'ClCG06G017100' => 'cla', 'ClCG06G018110' => 'cla', 'ClCG07G008800' => 'cla', 'ClCG07G015330' => 'cla', 'COL.COLO4_13698' => 'col', 'COL.COLO4_16659' => 'col', 'COL.COLO4_21986' => 'col', 'COL.COLO4_24049' => 'col', 'COL.COLO4_29061' => 'col', 'COL.COLO4_29075' => 'col', 'COL.COLO4_30094' => 'col', 'Cpa.g.c33689' => 'cpa', 'Cpa.g.sc108.39' => 'cpa', 'Cpa.g.sc108.41' => 'cpa', 'Cpa.g.sc1163.1' => 'cpa', 'Cpa.g.sc4.155' => 'cpa', 'Cpa.g.sc6.194' => 'cpa', 'CsaV3_1G000340' => 'csa', 'CsaV3_1G001400' => 'csa', 'CsaV3_4G002220' => 'csa', 'CsaV3_4G005370' => 'csa', 'CSS0007487' => 'camsi', 'CSS0008066' => 'camsi', 'CSS0009120' => 'camsi', 'CSS0015512' => 'camsi', 'CSS0022409' => 'camsi', 'CSS0025358' => 'camsi', 'CSS0044547' => 'camsi', 'DCAR_013057' => 'dca', 'DCAR_015058' => 'dca', 'DCAR_016027' => 'dca', 'DCAR_017327' => 'dca', 'DCAR_020743' => 'dca', 'DCAR_026157' => 'dca', 'DCAR_032339' => 'dca', 'DCAR_032340' => 'dca', 'Dinv11200' => 'din', 'Dinv11201' => 'din', 'Dinv20631' => 'din', 'Dinv23182' => 'din', 'Dinv33466' => 'din', 'Dinv33583' => 'din', 'Dinv38565' => 'din', 'Duzib068G0200' => 'dzi', 'Duzib147G0132' => 'dzi', 'Duzib147G0635' => 'dzi', 'Duzib205G1670' => 'dzi', 'Duzib251G0606' => 'dzi', 'ECA232G3336' => 'eca', 'ECA232G3763' => 'eca', 'ECA232G4845' => 'eca', 'ECA234G1607' => 'eca', 'ECA246G0932' => 'eca', 'ECA247G0781' => 'eca', 'ECA247G1932' => 'eca', 'ECA247G2079' => 'eca', 'ECA247G3338' => 'eca', 'ECA247G4115' => 'eca', 'EL10Ac3g06552' => 'bvu', 'EL10Ac5g10721' => 'bvu', 'EL10Ac5g10722' => 'bvu', 'EL10Ac5g10723' => 'bvu', 'EL10Ac5g11361' => 'bvu', 'EL10Ac6g13553' => 'bvu', 'EL10As8g23872' => 'bvu', 'Eucgr.B00250' => 'egr', 'Eucgr.B00251' => 'egr', 'Eucgr.B03533' => 'egr', 'Eucgr.I02381' => 'egr', 'Eucgr.K02700' => 'egr', 'FAN02G0174' => 'fan', 'FAN02G3146' => 'fan', 'FAN04G1672' => 'fan', 'FAN04G2273' => 'fan', 'FAN05G2791' => 'fan', 'FAN05G4035' => 'fan', 'FAN07G0834' => 'fan', 'FAN08G1198' => 'fan', 'FAN09G4182' => 'fan', 'FAN12G0496' => 'fan', 'FAN13G1027' => 'fan', 'FAN13G2951' => 'fan', 'FAN14G0705' => 'fan', 'FAN14G0720' => 'fan', 'FAN17G0201' => 'fan', 'FAN17G2665' => 'fan', 'FAN18G1456' => 'fan', 'FAN18G1525' => 'fan', 'FAN18G3500' => 'fan', 'FAN28G2670' => 'fan', 'FvH4_1g12391' => 'fve', 'FvH4_4g23220' => 'fve', 'FvH4_5g08810' => 'fve', 'FvH4_5g28960' => 'fve', 'FvH4_6g42820' => 'fve', 'FvH4_6g51110' => 'fve', 'Glyma.02G051802' => 'gma', 'Glyma.04G185300' => 'gma', 'Glyma.05G202900' => 'gma', 'Glyma.08G010300' => 'gma', 'Glyma.16G131900' => 'gma', 'Glyma.17G087900' => 'gma', 'Gohir.A07G048600' => 'ghi', 'Gohir.A11G179000' => 'ghi', 'Gohir.A12G140900' => 'ghi', 'Gohir.A12G140950' => 'ghi', 'Gohir.A12G191700' => 'ghi', 'Gohir.A13G086300' => 'ghi', 'Gohir.D07G052900' => 'ghi', 'Gohir.D11G186600' => 'ghi', 'Gohir.D12G145575' => 'ghi', 'Gohir.D12G145650' => 'ghi', 'Gohir.D12G145725' => 'ghi', 'Gohir.D12G194050' => 'ghi', 'Gohir.D13G091800' => 'ghi', 'Gorai.001G055900' => 'gra', 'Gorai.007G198400' => 'gra', 'Gorai.008G157000' => 'gra', 'Gorai.008G157100' => 'gra', 'Gorai.008G208700' => 'gra', 'Gorai.010G138700' => 'gra', 'GSVIVG01000977001' => 'vvi', 'GSVIVG01007708001' => 'vvi', 'GSVIVG01008587001' => 'vvi', 'GSVIVG01018849001' => 'vvi', 'GSVIVG01032432001' => 'vvi', 'HanXRQChr02g0034131' => 'han', 'HanXRQChr02g0035981' => 'han', 'HanXRQChr02g0035991' => 'han', 'HanXRQChr05g0155611' => 'han', 'HanXRQChr05g0155621' => 'han', 'HanXRQChr08g0236501' => 'han', 'HanXRQChr09g0261321' => 'han', 'HanXRQChr09g0272081' => 'han', 'HanXRQChr10g0310741' => 'han', 'HanXRQChr11g0325591' => 'han', 'HanXRQChr12g0385691' => 'han', 'HanXRQChr13g0387801' => 'han', 'HanXRQChr15g0463011' => 'han', 'Haze_03826' => 'cav', 'Haze_03827' => 'cav', 'Haze_07183' => 'cav', 'Haze_07537' => 'cav', 'Haze_07539' => 'cav', 'Haze_12461' => 'cav', 'Haze_16115' => 'cav', 'Haze_16808' => 'cav', 'Haze_18531' => 'cav', 'Hma1.2p1_0046F.1_g026700' => 'hma', 'Hma1.2p1_0046F.1_g026710' => 'hma', 'Hma1.2p1_0168F.1_g074340' => 'hma', 'Hma1.2p1_0266F.1_g107030' => 'hma', 'Hma1.2p1_0266F.1_g107060' => 'hma', 'Hma1.2p1_0275F.1_g110510' => 'hma', 'Hma1.2p1_0592F.1_g185490' => 'hma', 'Hma1.2p1_0592F.1_g185500' => 'hma', 'Hma1.2p1_0592F.1_g185510' => 'hma', 'Hma1.2p1_0592F.1_g185520' => 'hma', 'Hma1.2p1_0592F.1_g185530' => 'hma', 'Hma1.2p1_0818F.1_g223450' => 'hma', 'HPP92_009708' => 'vpl', 'HPP92_009793' => 'vpl', 'HPP92_009796' => 'vpl', 'HPP92_009797' => 'vpl', 'HPP92_014940' => 'vpl', 'HPP92_014988' => 'vpl', 'Hund02463' => 'sun', 'Hund02760' => 'sun', 'Hund05071' => 'sun', 'Hund10108' => 'sun', 'Hund11204' => 'sun', 'Hund14016' => 'sun', 'Hund16464' => 'sun', 'Lalb_Chr09g0333391' => 'lal', 'Lalb_Chr11g0070461' => 'lal', 'Lalb_Chr12g0201671' => 'lal', 'Lalb_Chr13g0297161' => 'lal', 'Lj1g0002823' => 'lja', 'Lj3C1074T6' => 'lonja', 'Lj4A212T28' => 'lonja', 'Lj4g0005516' => 'lja', 'Lj4g0013705' => 'lja', 'Lj4g0027865' => 'lja', 'Lj5C92G16' => 'lonja', 'Lj5C92T12' => 'lonja', 'Lj7C596T3' => 'lonja', 'Lj9A446G59' => 'lonja', 'Lj9A482G21' => 'lonja', 'Lsat_1_v5_gn_1_28261' => 'lsa', 'Lsat_1_v5_gn_1_28281' => 'lsa', 'Lsat_1_v5_gn_1_32721' => 'lsa', 'Lsat_1_v5_gn_4_151760' => 'lsa', 'Lsat_1_v5_gn_4_2120' => 'lsa', 'Lsat_1_v5_gn_4_75761' => 'lsa', 'Lsat_1_v5_gn_5_10920' => 'lsa', 'Manes.02G099900' => 'mes', 'Manes.11G096200' => 'mes', 'Manes.12G007200' => 'mes', 'Manes.14G048300' => 'mes', 'Manes.17G114700' => 'mes', 'Mapoly0002s0070' => 'mpo', 'Mapoly0029s0099' => 'mpo', 'MBI07_g24742_MAGBIO' => 'mbi', 'MBI10_g27988_MAGBIO' => 'mbi', 'MBI11_g13057_MAGBIO' => 'mbi', 'MD02G1137200' => 'mdo', 'MD06G1137200' => 'mdo', 'MD07G1122300' => 'mdo', 'MD09G1078200' => 'mdo', 'MD13G1123700' => 'mdo', 'MD14G1151900' => 'mdo', 'MD17G1030900' => 'mdo', 'MD17G1068200' => 'mdo', 'MD17G1068600' => 'mdo', 'Medtr3g077540' => 'mtr', 'Medtr4g105530' => 'mtr', 'Medtr8g076580' => 'mtr', 'Medtr8g076590' => 'mtr', 'Medtr8g096410' => 'mtr', 'MELO3C016411.2' => 'cme', 'MELO3C017780.2' => 'cme', 'MELO3C022560.2' => 'cme', 'MELO3C026187.2' => 'cme', 'MELO3C026286.2' => 'cme', 'MELO3C032854.2' => 'cme', 'Migut.H02495' => 'egut', 'Migut.I00561' => 'egut', 'Migut.K01015' => 'egut', 'Migut.K01016' => 'egut', 'Migut.L00743' => 'egut', 'Migut.L00744' => 'egut', 'Migut.L00746' => 'egut', 'Migut.L00798' => 'egut', 'Migut.L00799' => 'egut', 'Migut.N02096' => 'egut', 'MSTRG.11259' => 'ama', 'MSTRG.23142' => 'ama', 'MSTRG.2499' => 'ama', 'Nitab4.5_0000003g0730' => 'nta', 'Nitab4.5_0000137g0020' => 'nta', 'Nitab4.5_0000721g0210' => 'nta', 'Nitab4.5_0000723g0050' => 'nta', 'Nitab4.5_0000913g0070' => 'nta', 'Nitab4.5_0001332g0040' => 'nta', 'Nitab4.5_0001771g0050' => 'nta', 'Nitab4.5_0001918g0050' => 'nta', 'Nitab4.5_0002686g0030' => 'nta', 'Nitab4.5_0003156g0020' => 'nta', 'Nitab4.5_0003383g0040' => 'nta', 'Nitab4.5_0003918g0010' => 'nta', 'Nitab4.5_0006760g0010' => 'nta', 'Nn1g05981' => 'nnu', 'Nn1g06288' => 'nnu', 'Nn3g16371' => 'nnu', 'Nn3g16786' => 'nnu', 'Nn4g22232' => 'nnu', 'Oeu005144.1' => 'oeu', 'Oeu005145.1' => 'oeu', 'Oeu011348.1' => 'oeu', 'Oeu016415.1' => 'oeu', 'Oeu023501.1' => 'oeu', 'Oeu044473.1' => 'oeu', 'Oeu048892.2' => 'oeu', 'Os01g0549200' => 'osa', 'Os02g0469300' => 'osa', 'Os04g0311100' => 'osa', 'Os06g0474900' => 'osa', 'Os10g0181700' => 'osa', 'Os11g0454800' => 'osa', 'Peaxi162Scf00037g00714' => 'pax', 'Peaxi162Scf00084g01217' => 'pax', 'Peaxi162Scf00257g00217' => 'pax', 'Peaxi162Scf00516g00215' => 'pax', 'Peaxi162Scf00689g00123' => 'pax', 'PGR044G2719' => 'pgr', 'PGR083G1360' => 'pgr', 'PGR102G2849' => 'pgr', 'PGR119G2534' => 'pgr', 'PGSC0003DMG400003538' => 'stu', 'PGSC0003DMG400028138' => 'stu', 'PGSC0003DMG400031732' => 'stu', 'PGSC0003DMG400038165' => 'stu', 'Phvul.002G284600' => 'pvu', 'Phvul.003G258200' => 'pvu', 'Phvul.009G176500' => 'pvu', 'Potri.003G167201' => 'ptr', 'Potri.005G118400' => 'ptr', 'Potri.012G089000' => 'ptr', 'Potri.012G102800' => 'ptr', 'Potri.015G079400' => 'ptr', 'Potri.015G100900' => 'ptr', 'Pp3c14_9810' => 'ppa', 'Pp3c15_10450' => 'ppa', 'Pp3c20_19150' => 'ppa', 'Pp3c23_12740' => 'ppa', 'Pp3c23_6310' => 'ppa', 'Pp3c24_3720' => 'ppa', 'Pp3c27_2580' => 'ppa', 'Pp3c9_8990' => 'ppa', 'PRCOL_00002854' => 'pco', 'Prupe.1G221200' => 'ppe', 'Prupe.3G289000' => 'ppe', 'Prupe.5G147000' => 'ppe', 'Prupe.6G157300' => 'ppe', 'Prupe.7G163400' => 'ppe', 'Psat0s2177g0040' => 'psa', 'Psat3g174760' => 'psa', 'Psat3g192160' => 'psa', 'Psat4g058520' => 'psa', 'Psat4g096840' => 'psa', 'Psat7g037320' => 'psa', 'PSO017G1274' => 'pso', 'PSO017G5166' => 'pso', 'PSO063G4558' => 'pso', 'PSO170G4458' => 'pso', 'PSO170G5005' => 'pso', 'PSO210G6156' => 'pso', 'PSO210G6635' => 'pso', 'PSO210G7397' => 'pso', 'PSO210G7700' => 'pso', 'PSO455G0035' => 'pso', 'PSO455G0180' => 'pso', 'PSO478G4515' => 'pso', 'PSO832G1305' => 'pso', 'PSO832G3489' => 'pso', 'QL02p075247' => 'qlo', 'QL03p051148' => 'qlo', 'QL05p010313' => 'qlo', 'QL06p034627' => 'qlo', 'QL10p001889' => 'qlo', 'QL10p010846' => 'qlo', 'RcHm_v2.0_Chr1g0350621' => 'rch', 'RcHm_v2.0_Chr1g0350641' => 'rch', 'RcHm_v2.0_Chr2g0092891' => 'rch', 'RcHm_v2.0_Chr2g0100251' => 'rch', 'RcHm_v2.0_Chr2g0158661' => 'rch', 'RcHm_v2.0_Chr2g0172741' => 'rch', 'RcHm_v2.0_Chr4g0429571' => 'rch', 'RcHm_v2.0_Chr5g0042471' => 'rch', 'RcHm_v2.0_Chr7g0189451' => 'rch', 'Rhsim08G0052000' => 'rsi', 'Rhsim08G0174400' => 'rsi', 'Rhsim08G0193200' => 'rsi', 'Rhsim10G0214800' => 'rsi', 'Rhsim10G0214900' => 'rsi', 'Rhsim10G0215000' => 'rsi', 'Rhsim12G0022900' => 'rsi', 'Rhsim12G0177500' => 'rsi', 'Rhsim12G0177700' => 'rsi', 'Sabra03G0122600' => 'sbr', 'Sabra05G0097400' => 'sbr', 'Sabra12G0064100' => 'sbr', 'Sabra15G0121300' => 'sbr', 'SalBow2G0642' => 'sbo', 'SalBow5G2667' => 'sbo', 'SalBow5G4873' => 'sbo', 'SalBow8G2395' => 'sbo', 'Sc03g0003290' => 'sci', 'Sc10g0010130' => 'sci', 'Sc22g0003650' => 'sci', 'Sed0001603' => 'sed', 'Sed0004259' => 'sed', 'Sed0006789' => 'sed', 'Sed0011838' => 'sed', 'Sed0012964' => 'sed', 'Sed0016383' => 'sed', 'Sed0019010' => 'sed', 'Sed0020188' => 'sed', 'SEGI_04702' => 'sgi', 'SEGI_17231' => 'sgi', 'SEGI_18877' => 'sgi', 'SEGI_25196' => 'sgi', 'SEGI_25515' => 'sgi', 'SEGI_28445' => 'sgi', 'SEGI_37452' => 'sgi', 'SGA_v2.0_scaffold188G40336' => 'sas', 'SGA_v2.0_scaffold228G43247' => 'sas', 'SGA_v2.0_scaffold280G46853' => 'sas', 'SGA_v2.0_scaffold34G13808' => 'sas', 'SGA_v2.0_scaffold40G15576' => 'sas', 'SGA_v2.0_scaffold611G53188' => 'sas', 'SGA_v2.0_scaffold78G25461' => 'sas', 'SGA_v2.0_scaffold90G27888' => 'sas', 'SHI08601' => 'shi', 'SHI08606' => 'shi', 'SHI17117' => 'shi', 'SHI17119' => 'shi', 'SMO118G0201' => 'smo', 'SMO169G0247' => 'smo', 'SMO176G0006' => 'smo', 'SMO176G0015' => 'smo', 'SMO202G0006' => 'smo', 'SMO240G0050' => 'smo', 'SMO286G0009' => 'smo', 'SMO338G0033' => 'smo', 'SMO356G0533' => 'smo', 'SMO364G0382' => 'smo', 'SMO367G0166' => 'smo', 'SMO367G1098' => 'smo', 'Solyc01g009920.3' => 'sly', 'Solyc01g099300.3' => 'sly', 'Solyc02g084700.3' => 'sly', 'Solyc03g097520.3' => 'sly', 'Solyc06g071580.3' => 'sly', 'Solyc10g081760.3' => 'sly', 'Sopen01g005480' => 'spe', 'Sopen01g042850' => 'spe', 'Sopen02g029370' => 'spe', 'Sopen03g028280' => 'spe', 'Sopen06g027870' => 'spe', 'Sopen10g032270' => 'spe', 'Sp5g18180' => 'spa', 'Sp6g12880' => 'spa', 'Sp6g30850' => 'spa', 'Sp7g22960' => 'spa', 'Sp7g34010' => 'spa', 'SpUn1326_0010' => 'spa', 'TAR371G0242' => 'tar', 'TAR622G0638' => 'tar', 'TAR628G1548' => 'tar', 'TAR629G1079' => 'tar', 'TAR629G3413' => 'tar', 'THA.LOC104804249' => 'tha', 'THA.LOC104808315' => 'tha', 'THA.LOC104809238' => 'tha', 'THA.LOC104825484' => 'tha', 'Thecc.01G025500' => 'tca', 'Thecc.03G015800' => 'tca', 'Thecc.03G018000' => 'tca', 'Thecc.03G134800' => 'tca', 'Thecc.04G014700' => 'tca', 'Thhalv10006991m.g' => 'esa', 'Thhalv10012707m.g' => 'esa', 'Thhalv10015739m.g' => 'esa', 'Thhalv10024553m.g' => 'esa', 'Thhalv10024673m.g' => 'esa', 'Thhalv10029187m.g' => 'esa', 'TPR.G12971' => 'tpr', 'TPR.G29396' => 'tpr', 'TPR.G33376' => 'tpr', 'TPR.G35508' => 'tpr', 'TPR.G35516' => 'tpr', 'TPR.G37317' => 'tpr', 'TPR.G37389' => 'tpr', 'TPR.G37523' => 'tpr', 'TPR.G559' => 'tpr', 'TWI14G0070' => 'twi', 'TWI14G0729' => 'twi', 'TWI18G0596' => 'twi', 'TWI39G0780' => 'twi', 'TWI39G0850' => 'twi', 'TWI73G1052' => 'twi', 'unitig_52.g17485' => 'ugi', 'unitig_61.g26355' => 'ugi', 'vmacro01040' => 'vma', 'vmacro16731' => 'vma', 'vmacro18270' => 'vma', 'vmacro19142' => 'vma', 'vmacro19407' => 'vma', 'vmacro19408' => 'vma', 'vmacro21899' => 'vma', 'vmacro21900' => 'vma', 'vmacro21901' => 'vma', 'VMungo0251G0490' => 'vmu', 'VMungo0251G1748' => 'vmu', 'VMungo1309G0421' => 'vmu', 'Zm00001eb086500' => 'zma', 'Zm00001eb150680' => 'zma', 'Zm00001eb162330' => 'zma', 'Zm00001eb203130' => 'zma', 'Zm00001eb369480' => 'zma', 'Zm00001eb382340' => 'zma', 'Zm00001eb416360' => 'zma' ), 'gf_id' => 'HOM05D000902', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000902' ), 'data_identifier' => 'HOM05D000902', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000902', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '663', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02470' => 'bna', 'A01p16260' => 'bna', 'A02p01680' => 'bna', 'A03p16600' => 'bna', 'A03p55660' => 'bna', 'A03p64160' => 'bna', 'A03p64170' => 'bna', 'A08p31900' => 'bna', 'A09p59530' => 'bna', 'A10p08230' => 'bna', 'A10p25090' => 'bna', 'Aa31LG3G7100' => 'aar', 'Aa31LG3G7110' => 'aar', 'Aa31LG6G13160' => 'aar', 'Aa31LG7G10770' => 'aar', 'Aa31LG7G3830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2723' => 'aag', 'Actinidia08045' => 'ach', 'Actinidia08888' => 'ach', 'Actinidia18333' => 'ach', 'Actinidia19334' => 'ach', 'Actinidia25552' => 'ach', 'Actinidia26089' => 'ach', 'Actinidia30615' => 'ach', 'Actinidia30616' => 'ach', 'Actinidia33083' => 'ach', 'Actinidia35762' => 'ach', 'Ah.02g110620' => 'amhyb', 'Ah.11g046390' => 'amhyb', 'AL1G31670' => 'aly', 'AL6G23730' => 'aly', 'AL7G14740' => 'aly', 'AL7G14750' => 'aly', 'AL7G14760' => 'aly', 'AL7G28220' => 'aly', 'AL8G24940' => 'aly', 'Aqoxy3G01665' => 'aox', 'Aqoxy3G02853' => 'aox', 'Aqoxy5G01513' => 'aox', 'Aqoxy5G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8SKA4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ75LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKDA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0LJZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7REX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZP4YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWX7I5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2QKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS0L9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPCD8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q161UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC7XCF' => 'arhy', 'AT1G19100' => 'ath', 'AT4G24970' => 'ath', 'AT4G36270' => 'ath', 'AT4G36280' => 'ath', 'AT4G36290' => 'ath', 'AT5G13130' => 'ath', 'AT5G50780' => 'ath', 'ATR0582G266' => 'atr', 'ATR0661G195' => 'atr', 'ATR1152G031' => 'atr', 'Atru.chr11.2382' => 'acertr', 'Atru.chr12.2337' => 'acertr', 'Atru.chr3.744' => 'acertr', 'Atru.chr6.1870' => 'acertr', 'Atru.chr9.2515' => 'acertr', 'AUR62004120' => 'cqu', 'AUR62005667' => 'cqu', 'AUR62007634' => 'cqu', 'AUR62008186' => 'cqu', 'AUR62008187' => 'cqu', 'AUR62008188' => 'cqu', 'AUR62027954' => 'cqu', 'AUR62028766' => 'cqu', 'AUR62028767' => 'cqu', 'AUR62028768' => 'cqu', 'AUR62028886' => 'cqu', 'AUR62029563' => 'cqu', 'AUR62038832' => 'cqu', 'BcaB01g04149' => 'bca', 'BcaB03g12940' => 'bca', 'BcaB03g13090' => 'bca', 'BcaB03g14466' => 'bca', 'BcaB05g24035' => 'bca', 'BcaC01g06050' => 'bca', 'BcaC04g19148' => 'bca', 'BcaC04g20761' => 'bca', 'BcaC06g32845' => 'bca', 'BcaC07g41274' => 'bca', 'BcaC09g50827' => 'bca', 'BcaNung00741' => 'bca', 'BcaNung00742' => 'bca', 'BcaNung01859' => 'bca', 'BcaNung03985' => 'bca', 'BcaNung03989' => 'bca', 'BcaNung05661' => 'bca', 'BolC1t00257H' => 'bol', 'BolC1t01956H' => 'bol', 'BolC2t06534H' => 'bol', 'BolC3t14334H' => 'bol', 'BolC5t30451H' => 'bol', 'BolC7t45880H' => 'bol', 'BolC7t46586H' => 'bol', 'BolC8t49301H' => 'bol', 'BolC8t51837H' => 'bol', 'BolC9t56822H' => 'bol', 'BolC9t59235H' => 'bol', 'BraA01t00234Z' => 'bra', 'BraA01t01563Z' => 'bra', 'BraA02t05147Z' => 'bra', 'BraA03t10947Z' => 'bra', 'BraA03t14633Z' => 'bra', 'BraA08t35112Z' => 'bra', 'BraA09t41330Z' => 'bra', 'BraA10t44570Z' => 'bra', 'C01p02670' => 'bna', 'C01p20260' => 'bna', 'C02p05890' => 'bna', 'C03p19530' => 'bna', 'C05p17470' => 'bna', 'C07p53900' => 'bna', 'C07p61630' => 'bna', 'C08p16800' => 'bna', 'C08p42810' => 'bna', 'C09p39480' => 'bna', 'C09p63980' => 'bna', 'CAN.G1001.7' => 'can', 'CAN.G1034.55' => 'can', 'CAN.G143.7' => 'can', 'CAN.G3340.1' => 'can', 'CAN.G358.19' => 'can', 'CAN.G373.2' => 'can', 'CAN.G674.16' => 'can', 'CAN.G674.17' => 'can', 'CAN.G674.18' => 'can', 'CAN.G732.2' => 'can', 'CAN.G732.3' => 'can', 'CAN.G993.39' => 'can', 'CANSAT01G2052' => 'cansat', 'CANSAT80G0070' => 'cansat', 'CANSAT80G0483' => 'cansat', 'CANSAT80G0625' => 'cansat', 'CARHR019690' => 'chi', 'CARHR080280' => 'chi', 'CARHR152750' => 'chi', 'CARHR152760' => 'chi', 'CARHR152770' => 'chi', 'CARHR200340' => 'chi', 'CARHR232370' => 'chi', 'CARHR244670' => 'chi', 'CARHR244680' => 'chi', 'CARHR257520' => 'chi', 'Carub.0001s1872' => 'cru', 'Carub.0006s1130' => 'cru', 'Carub.0007s0396' => 'cru', 'Carub.0007s0397' => 'cru', 'Carub.0007s1608' => 'cru', 'Carub.0008s1068' => 'cru', 'Carub.0008s1077' => 'cru', 'Ca_16158_v3' => 'car', 'Ca_17571_v3' => 'car', 'Ca_21936_v3' => 'car', 'Ca_22350_v3' => 'car', 'CBR_g22445' => 'cbr', 'CBR_g26290' => 'cbr', 'Cc04_g09610' => 'ccan', 'Cc04_g12280' => 'ccan', 'Cc07_g10230' => 'ccan', 'CDE02G0093' => 'cde', 'CDE02G0701' => 'cde', 'CDE04G1050' => 'cde', 'CDE05G1833' => 'cde', 'CDE05G3058' => 'cde', 'CDE05G3380' => 'cde', 'CDE06G0536' => 'cde', 'Cfa006923' => 'cfa', 'Cfa009402' => 'cfa', 'Cfa018751' => 'cfa', 'Cfa019164' => 'cfa', 'Cfa022935' => 'cfa', 'Ciclev10019081m.g' => 'ccl', 'Ciclev10025076m.g' => 'ccl', 'Ciclev10030712m.g' => 'ccl', 'Ciclev10033760m.g' => 'ccl', 'CiPaw.05G105600' => 'cil', 'CiPaw.08G136700' => 'cil', 'CiPaw.11G003900' => 'cil', 'CiPaw.11G023700' => 'cil', 'CiPaw.12G003700' => 'cil', 'ClCG06G017100' => 'cla', 'ClCG06G018110' => 'cla', 'ClCG07G008800' => 'cla', 'ClCG07G015330' => 'cla', 'COL.COLO4_13698' => 'col', 'COL.COLO4_16659' => 'col', 'COL.COLO4_21986' => 'col', 'COL.COLO4_24049' => 'col', 'COL.COLO4_29061' => 'col', 'COL.COLO4_29075' => 'col', 'COL.COLO4_30094' => 'col', 'Cpa.g.c33689' => 'cpa', 'Cpa.g.sc108.39' => 'cpa', 'Cpa.g.sc108.41' => 'cpa', 'Cpa.g.sc1163.1' => 'cpa', 'Cpa.g.sc4.155' => 'cpa', 'Cpa.g.sc6.194' => 'cpa', 'CsaV3_1G000340' => 'csa', 'CsaV3_1G001400' => 'csa', 'CsaV3_4G002220' => 'csa', 'CsaV3_4G005370' => 'csa', 'CSS0007487' => 'camsi', 'CSS0008066' => 'camsi', 'CSS0009120' => 'camsi', 'CSS0015512' => 'camsi', 'CSS0022409' => 'camsi', 'CSS0025358' => 'camsi', 'CSS0044547' => 'camsi', 'DCAR_013057' => 'dca', 'DCAR_015058' => 'dca', 'DCAR_016027' => 'dca', 'DCAR_017327' => 'dca', 'DCAR_020743' => 'dca', 'DCAR_026157' => 'dca', 'DCAR_032339' => 'dca', 'DCAR_032340' => 'dca', 'Dinv11200' => 'din', 'Dinv11201' => 'din', 'Dinv20631' => 'din', 'Dinv23182' => 'din', 'Dinv33466' => 'din', 'Dinv33583' => 'din', 'Dinv38565' => 'din', 'Duzib068G0200' => 'dzi', 'Duzib147G0132' => 'dzi', 'Duzib147G0635' => 'dzi', 'Duzib205G1670' => 'dzi', 'Duzib251G0606' => 'dzi', 'ECA232G3336' => 'eca', 'ECA232G3763' => 'eca', 'ECA232G4845' => 'eca', 'ECA234G1607' => 'eca', 'ECA246G0932' => 'eca', 'ECA247G0781' => 'eca', 'ECA247G1932' => 'eca', 'ECA247G2079' => 'eca', 'ECA247G3338' => 'eca', 'ECA247G4115' => 'eca', 'EL10Ac3g06552' => 'bvu', 'EL10Ac5g10721' => 'bvu', 'EL10Ac5g10722' => 'bvu', 'EL10Ac5g10723' => 'bvu', 'EL10Ac5g11361' => 'bvu', 'EL10Ac6g13553' => 'bvu', 'EL10As8g23872' => 'bvu', 'Eucgr.B00250' => 'egr', 'Eucgr.B00251' => 'egr', 'Eucgr.B03533' => 'egr', 'Eucgr.I02381' => 'egr', 'Eucgr.K02700' => 'egr', 'FAN02G0174' => 'fan', 'FAN02G3146' => 'fan', 'FAN04G1672' => 'fan', 'FAN04G2273' => 'fan', 'FAN05G2791' => 'fan', 'FAN05G4035' => 'fan', 'FAN07G0834' => 'fan', 'FAN08G1198' => 'fan', 'FAN09G4182' => 'fan', 'FAN12G0496' => 'fan', 'FAN13G1027' => 'fan', 'FAN13G2951' => 'fan', 'FAN14G0705' => 'fan', 'FAN14G0720' => 'fan', 'FAN17G0201' => 'fan', 'FAN17G2665' => 'fan', 'FAN18G1456' => 'fan', 'FAN18G1525' => 'fan', 'FAN18G3500' => 'fan', 'FAN28G2670' => 'fan', 'FvH4_1g12391' => 'fve', 'FvH4_4g23220' => 'fve', 'FvH4_5g08810' => 'fve', 'FvH4_5g28960' => 'fve', 'FvH4_6g42820' => 'fve', 'FvH4_6g51110' => 'fve', 'Glyma.02G051802' => 'gma', 'Glyma.04G185300' => 'gma', 'Glyma.05G202900' => 'gma', 'Glyma.08G010300' => 'gma', 'Glyma.16G131900' => 'gma', 'Glyma.17G087900' => 'gma', 'Gohir.A07G048600' => 'ghi', 'Gohir.A11G179000' => 'ghi', 'Gohir.A12G140900' => 'ghi', 'Gohir.A12G140950' => 'ghi', 'Gohir.A12G191700' => 'ghi', 'Gohir.A13G086300' => 'ghi', 'Gohir.D07G052900' => 'ghi', 'Gohir.D11G186600' => 'ghi', 'Gohir.D12G145575' => 'ghi', 'Gohir.D12G145650' => 'ghi', 'Gohir.D12G145725' => 'ghi', 'Gohir.D12G194050' => 'ghi', 'Gohir.D13G091800' => 'ghi', 'Gorai.001G055900' => 'gra', 'Gorai.007G198400' => 'gra', 'Gorai.008G157000' => 'gra', 'Gorai.008G157100' => 'gra', 'Gorai.008G208700' => 'gra', 'Gorai.010G138700' => 'gra', 'GSVIVG01000977001' => 'vvi', 'GSVIVG01007708001' => 'vvi', 'GSVIVG01008587001' => 'vvi', 'GSVIVG01018849001' => 'vvi', 'GSVIVG01032432001' => 'vvi', 'HanXRQChr02g0034131' => 'han', 'HanXRQChr02g0035981' => 'han', 'HanXRQChr02g0035991' => 'han', 'HanXRQChr05g0155611' => 'han', 'HanXRQChr05g0155621' => 'han', 'HanXRQChr08g0236501' => 'han', 'HanXRQChr09g0261321' => 'han', 'HanXRQChr09g0272081' => 'han', 'HanXRQChr10g0310741' => 'han', 'HanXRQChr11g0325591' => 'han', 'HanXRQChr12g0385691' => 'han', 'HanXRQChr13g0387801' => 'han', 'HanXRQChr15g0463011' => 'han', 'Haze_03826' => 'cav', 'Haze_03827' => 'cav', 'Haze_07183' => 'cav', 'Haze_07537' => 'cav', 'Haze_07539' => 'cav', 'Haze_12461' => 'cav', 'Haze_16115' => 'cav', 'Haze_16808' => 'cav', 'Haze_18531' => 'cav', 'Hma1.2p1_0046F.1_g026700' => 'hma', 'Hma1.2p1_0046F.1_g026710' => 'hma', 'Hma1.2p1_0168F.1_g074340' => 'hma', 'Hma1.2p1_0266F.1_g107030' => 'hma', 'Hma1.2p1_0266F.1_g107060' => 'hma', 'Hma1.2p1_0275F.1_g110510' => 'hma', 'Hma1.2p1_0592F.1_g185490' => 'hma', 'Hma1.2p1_0592F.1_g185500' => 'hma', 'Hma1.2p1_0592F.1_g185510' => 'hma', 'Hma1.2p1_0592F.1_g185520' => 'hma', 'Hma1.2p1_0592F.1_g185530' => 'hma', 'Hma1.2p1_0818F.1_g223450' => 'hma', 'HPP92_009708' => 'vpl', 'HPP92_009793' => 'vpl', 'HPP92_009796' => 'vpl', 'HPP92_009797' => 'vpl', 'HPP92_014940' => 'vpl', 'HPP92_014988' => 'vpl', 'Hund02463' => 'sun', 'Hund02760' => 'sun', 'Hund05071' => 'sun', 'Hund10108' => 'sun', 'Hund11204' => 'sun', 'Hund14016' => 'sun', 'Hund16464' => 'sun', 'Lalb_Chr09g0333391' => 'lal', 'Lalb_Chr11g0070461' => 'lal', 'Lalb_Chr12g0201671' => 'lal', 'Lalb_Chr13g0297161' => 'lal', 'Lj1g0002823' => 'lja', 'Lj3C1074T6' => 'lonja', 'Lj4A212T28' => 'lonja', 'Lj4g0005516' => 'lja', 'Lj4g0013705' => 'lja', 'Lj4g0027865' => 'lja', 'Lj5C92G16' => 'lonja', 'Lj5C92T12' => 'lonja', 'Lj7C596T3' => 'lonja', 'Lj9A446G59' => 'lonja', 'Lj9A482G21' => 'lonja', 'Lsat_1_v5_gn_1_28261' => 'lsa', 'Lsat_1_v5_gn_1_28281' => 'lsa', 'Lsat_1_v5_gn_1_32721' => 'lsa', 'Lsat_1_v5_gn_4_151760' => 'lsa', 'Lsat_1_v5_gn_4_2120' => 'lsa', 'Lsat_1_v5_gn_4_75761' => 'lsa', 'Lsat_1_v5_gn_5_10920' => 'lsa', 'Manes.02G099900' => 'mes', 'Manes.11G096200' => 'mes', 'Manes.12G007200' => 'mes', 'Manes.14G048300' => 'mes', 'Manes.17G114700' => 'mes', 'Mapoly0002s0070' => 'mpo', 'Mapoly0029s0099' => 'mpo', 'MBI07_g24742_MAGBIO' => 'mbi', 'MBI10_g27988_MAGBIO' => 'mbi', 'MBI11_g13057_MAGBIO' => 'mbi', 'MD02G1137200' => 'mdo', 'MD06G1137200' => 'mdo', 'MD07G1122300' => 'mdo', 'MD09G1078200' => 'mdo', 'MD13G1123700' => 'mdo', 'MD14G1151900' => 'mdo', 'MD17G1030900' => 'mdo', 'MD17G1068200' => 'mdo', 'MD17G1068600' => 'mdo', 'Medtr3g077540' => 'mtr', 'Medtr4g105530' => 'mtr', 'Medtr8g076580' => 'mtr', 'Medtr8g076590' => 'mtr', 'Medtr8g096410' => 'mtr', 'MELO3C016411.2' => 'cme', 'MELO3C017780.2' => 'cme', 'MELO3C022560.2' => 'cme', 'MELO3C026187.2' => 'cme', 'MELO3C026286.2' => 'cme', 'MELO3C032854.2' => 'cme', 'Migut.H02495' => 'egut', 'Migut.I00561' => 'egut', 'Migut.K01015' => 'egut', 'Migut.K01016' => 'egut', 'Migut.L00743' => 'egut', 'Migut.L00744' => 'egut', 'Migut.L00746' => 'egut', 'Migut.L00798' => 'egut', 'Migut.L00799' => 'egut', 'Migut.N02096' => 'egut', 'MSTRG.11259' => 'ama', 'MSTRG.23142' => 'ama', 'MSTRG.2499' => 'ama', 'Nitab4.5_0000003g0730' => 'nta', 'Nitab4.5_0000137g0020' => 'nta', 'Nitab4.5_0000721g0210' => 'nta', 'Nitab4.5_0000723g0050' => 'nta', 'Nitab4.5_0000913g0070' => 'nta', 'Nitab4.5_0001332g0040' => 'nta', 'Nitab4.5_0001771g0050' => 'nta', 'Nitab4.5_0001918g0050' => 'nta', 'Nitab4.5_0002686g0030' => 'nta', 'Nitab4.5_0003156g0020' => 'nta', 'Nitab4.5_0003383g0040' => 'nta', 'Nitab4.5_0003918g0010' => 'nta', 'Nitab4.5_0006760g0010' => 'nta', 'Nn1g05981' => 'nnu', 'Nn1g06288' => 'nnu', 'Nn3g16371' => 'nnu', 'Nn3g16786' => 'nnu', 'Nn4g22232' => 'nnu', 'Oeu005144.1' => 'oeu', 'Oeu005145.1' => 'oeu', 'Oeu011348.1' => 'oeu', 'Oeu016415.1' => 'oeu', 'Oeu023501.1' => 'oeu', 'Oeu044473.1' => 'oeu', 'Oeu048892.2' => 'oeu', 'Os01g0549200' => 'osa', 'Os02g0469300' => 'osa', 'Os04g0311100' => 'osa', 'Os06g0474900' => 'osa', 'Os10g0181700' => 'osa', 'Os11g0454800' => 'osa', 'Peaxi162Scf00037g00714' => 'pax', 'Peaxi162Scf00084g01217' => 'pax', 'Peaxi162Scf00257g00217' => 'pax', 'Peaxi162Scf00516g00215' => 'pax', 'Peaxi162Scf00689g00123' => 'pax', 'PGR044G2719' => 'pgr', 'PGR083G1360' => 'pgr', 'PGR102G2849' => 'pgr', 'PGR119G2534' => 'pgr', 'PGSC0003DMG400003538' => 'stu', 'PGSC0003DMG400028138' => 'stu', 'PGSC0003DMG400031732' => 'stu', 'PGSC0003DMG400038165' => 'stu', 'Phvul.002G284600' => 'pvu', 'Phvul.003G258200' => 'pvu', 'Phvul.009G176500' => 'pvu', 'Potri.003G167201' => 'ptr', 'Potri.005G118400' => 'ptr', 'Potri.012G089000' => 'ptr', 'Potri.012G102800' => 'ptr', 'Potri.015G079400' => 'ptr', 'Potri.015G100900' => 'ptr', 'Pp3c14_9810' => 'ppa', 'Pp3c15_10450' => 'ppa', 'Pp3c20_19150' => 'ppa', 'Pp3c23_12740' => 'ppa', 'Pp3c23_6310' => 'ppa', 'Pp3c24_3720' => 'ppa', 'Pp3c27_2580' => 'ppa', 'Pp3c9_8990' => 'ppa', 'PRCOL_00002854' => 'pco', 'Prupe.1G221200' => 'ppe', 'Prupe.3G289000' => 'ppe', 'Prupe.5G147000' => 'ppe', 'Prupe.6G157300' => 'ppe', 'Prupe.7G163400' => 'ppe', 'Psat0s2177g0040' => 'psa', 'Psat3g174760' => 'psa', 'Psat3g192160' => 'psa', 'Psat4g058520' => 'psa', 'Psat4g096840' => 'psa', 'Psat7g037320' => 'psa', 'PSO017G1274' => 'pso', 'PSO017G5166' => 'pso', 'PSO063G4558' => 'pso', 'PSO170G4458' => 'pso', 'PSO170G5005' => 'pso', 'PSO210G6156' => 'pso', 'PSO210G6635' => 'pso', 'PSO210G7397' => 'pso', 'PSO210G7700' => 'pso', 'PSO455G0035' => 'pso', 'PSO455G0180' => 'pso', 'PSO478G4515' => 'pso', 'PSO832G1305' => 'pso', 'PSO832G3489' => 'pso', 'QL02p075247' => 'qlo', 'QL03p051148' => 'qlo', 'QL05p010313' => 'qlo', 'QL06p034627' => 'qlo', 'QL10p001889' => 'qlo', 'QL10p010846' => 'qlo', 'RcHm_v2.0_Chr1g0350621' => 'rch', 'RcHm_v2.0_Chr1g0350641' => 'rch', 'RcHm_v2.0_Chr2g0092891' => 'rch', 'RcHm_v2.0_Chr2g0100251' => 'rch', 'RcHm_v2.0_Chr2g0158661' => 'rch', 'RcHm_v2.0_Chr2g0172741' => 'rch', 'RcHm_v2.0_Chr4g0429571' => 'rch', 'RcHm_v2.0_Chr5g0042471' => 'rch', 'RcHm_v2.0_Chr7g0189451' => 'rch', 'Rhsim08G0052000' => 'rsi', 'Rhsim08G0174400' => 'rsi', 'Rhsim08G0193200' => 'rsi', 'Rhsim10G0214800' => 'rsi', 'Rhsim10G0214900' => 'rsi', 'Rhsim10G0215000' => 'rsi', 'Rhsim12G0022900' => 'rsi', 'Rhsim12G0177500' => 'rsi', 'Rhsim12G0177700' => 'rsi', 'Sabra03G0122600' => 'sbr', 'Sabra05G0097400' => 'sbr', 'Sabra12G0064100' => 'sbr', 'Sabra15G0121300' => 'sbr', 'SalBow2G0642' => 'sbo', 'SalBow5G2667' => 'sbo', 'SalBow5G4873' => 'sbo', 'SalBow8G2395' => 'sbo', 'Sc03g0003290' => 'sci', 'Sc10g0010130' => 'sci', 'Sc22g0003650' => 'sci', 'Sed0001603' => 'sed', 'Sed0004259' => 'sed', 'Sed0006789' => 'sed', 'Sed0011838' => 'sed', 'Sed0012964' => 'sed', 'Sed0016383' => 'sed', 'Sed0019010' => 'sed', 'Sed0020188' => 'sed', 'SEGI_04702' => 'sgi', 'SEGI_17231' => 'sgi', 'SEGI_18877' => 'sgi', 'SEGI_25196' => 'sgi', 'SEGI_25515' => 'sgi', 'SEGI_28445' => 'sgi', 'SEGI_37452' => 'sgi', 'SGA_v2.0_scaffold188G40336' => 'sas', 'SGA_v2.0_scaffold228G43247' => 'sas', 'SGA_v2.0_scaffold280G46853' => 'sas', 'SGA_v2.0_scaffold34G13808' => 'sas', 'SGA_v2.0_scaffold40G15576' => 'sas', 'SGA_v2.0_scaffold611G53188' => 'sas', 'SGA_v2.0_scaffold78G25461' => 'sas', 'SGA_v2.0_scaffold90G27888' => 'sas', 'SHI08601' => 'shi', 'SHI08606' => 'shi', 'SHI17117' => 'shi', 'SHI17119' => 'shi', 'SMO118G0201' => 'smo', 'SMO169G0247' => 'smo', 'SMO176G0006' => 'smo', 'SMO176G0015' => 'smo', 'SMO202G0006' => 'smo', 'SMO240G0050' => 'smo', 'SMO286G0009' => 'smo', 'SMO338G0033' => 'smo', 'SMO356G0533' => 'smo', 'SMO364G0382' => 'smo', 'SMO367G0166' => 'smo', 'SMO367G1098' => 'smo', 'Solyc01g009920.3' => 'sly', 'Solyc01g099300.3' => 'sly', 'Solyc02g084700.3' => 'sly', 'Solyc03g097520.3' => 'sly', 'Solyc06g071580.3' => 'sly', 'Solyc10g081760.3' => 'sly', 'Sopen01g005480' => 'spe', 'Sopen01g042850' => 'spe', 'Sopen02g029370' => 'spe', 'Sopen03g028280' => 'spe', 'Sopen06g027870' => 'spe', 'Sopen10g032270' => 'spe', 'Sp5g18180' => 'spa', 'Sp6g12880' => 'spa', 'Sp6g30850' => 'spa', 'Sp7g22960' => 'spa', 'Sp7g34010' => 'spa', 'SpUn1326_0010' => 'spa', 'TAR371G0242' => 'tar', 'TAR622G0638' => 'tar', 'TAR628G1548' => 'tar', 'TAR629G1079' => 'tar', 'TAR629G3413' => 'tar', 'THA.LOC104804249' => 'tha', 'THA.LOC104808315' => 'tha', 'THA.LOC104809238' => 'tha', 'THA.LOC104825484' => 'tha', 'Thecc.01G025500' => 'tca', 'Thecc.03G015800' => 'tca', 'Thecc.03G018000' => 'tca', 'Thecc.03G134800' => 'tca', 'Thecc.04G014700' => 'tca', 'Thhalv10006991m.g' => 'esa', 'Thhalv10012707m.g' => 'esa', 'Thhalv10015739m.g' => 'esa', 'Thhalv10024553m.g' => 'esa', 'Thhalv10024673m.g' => 'esa', 'Thhalv10029187m.g' => 'esa', 'TPR.G12971' => 'tpr', 'TPR.G29396' => 'tpr', 'TPR.G33376' => 'tpr', 'TPR.G35508' => 'tpr', 'TPR.G35516' => 'tpr', 'TPR.G37317' => 'tpr', 'TPR.G37389' => 'tpr', 'TPR.G37523' => 'tpr', 'TPR.G559' => 'tpr', 'TWI14G0070' => 'twi', 'TWI14G0729' => 'twi', 'TWI18G0596' => 'twi', 'TWI39G0780' => 'twi', 'TWI39G0850' => 'twi', 'TWI73G1052' => 'twi', 'unitig_52.g17485' => 'ugi', 'unitig_61.g26355' => 'ugi', 'vmacro01040' => 'vma', 'vmacro16731' => 'vma', 'vmacro18270' => 'vma', 'vmacro19142' => 'vma', 'vmacro19407' => 'vma', 'vmacro19408' => 'vma', 'vmacro21899' => 'vma', 'vmacro21900' => 'vma', 'vmacro21901' => 'vma', 'VMungo0251G0490' => 'vmu', 'VMungo0251G1748' => 'vmu', 'VMungo1309G0421' => 'vmu', 'Zm00001eb086500' => 'zma', 'Zm00001eb150680' => 'zma', 'Zm00001eb162330' => 'zma', 'Zm00001eb203130' => 'zma', 'Zm00001eb369480' => 'zma', 'Zm00001eb382340' => 'zma', 'Zm00001eb416360' => 'zma' ) $gf_id = 'HOM05D000902' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000902' ) $data_identifier = 'HOM05D000902' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 13, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 10, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 6, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 9, 'hma' => (int) 12, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 4, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 6, 'ppa' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 6, 'rch' => (int) 9, 'rsi' => (int) 9, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 12, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 3, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416360' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000902', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '663', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02470' => 'bna', 'A01p16260' => 'bna', 'A02p01680' => 'bna', 'A03p16600' => 'bna', 'A03p55660' => 'bna', 'A03p64160' => 'bna', 'A03p64170' => 'bna', 'A08p31900' => 'bna', 'A09p59530' => 'bna', 'A10p08230' => 'bna', 'A10p25090' => 'bna', 'Aa31LG3G7100' => 'aar', 'Aa31LG3G7110' => 'aar', 'Aa31LG6G13160' => 'aar', 'Aa31LG7G10770' => 'aar', 'Aa31LG7G3830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2723' => 'aag', 'Actinidia08045' => 'ach', 'Actinidia08888' => 'ach', 'Actinidia18333' => 'ach', 'Actinidia19334' => 'ach', 'Actinidia25552' => 'ach', 'Actinidia26089' => 'ach', 'Actinidia30615' => 'ach', 'Actinidia30616' => 'ach', 'Actinidia33083' => 'ach', 'Actinidia35762' => 'ach', 'Ah.02g110620' => 'amhyb', 'Ah.11g046390' => 'amhyb', 'AL1G31670' => 'aly', 'AL6G23730' => 'aly', 'AL7G14740' => 'aly', 'AL7G14750' => 'aly', 'AL7G14760' => 'aly', 'AL7G28220' => 'aly', 'AL8G24940' => 'aly', 'Aqoxy3G01665' => 'aox', 'Aqoxy3G02853' => 'aox', 'Aqoxy5G01513' => 'aox', 'Aqoxy5G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8SKA4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ75LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKDA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0LJZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7REX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZP4YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWX7I5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2QKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS0L9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPCD8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q161UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC7XCF' => 'arhy', 'AT1G19100' => 'ath', 'AT4G24970' => 'ath', 'AT4G36270' => 'ath', 'AT4G36280' => 'ath', 'AT4G36290' => 'ath', 'AT5G13130' => 'ath', 'AT5G50780' => 'ath', 'ATR0582G266' => 'atr', 'ATR0661G195' => 'atr', 'ATR1152G031' => 'atr', 'Atru.chr11.2382' => 'acertr', 'Atru.chr12.2337' => 'acertr', 'Atru.chr3.744' => 'acertr', 'Atru.chr6.1870' => 'acertr', 'Atru.chr9.2515' => 'acertr', 'AUR62004120' => 'cqu', 'AUR62005667' => 'cqu', 'AUR62007634' => 'cqu', 'AUR62008186' => 'cqu', 'AUR62008187' => 'cqu', 'AUR62008188' => 'cqu', 'AUR62027954' => 'cqu', 'AUR62028766' => 'cqu', 'AUR62028767' => 'cqu', 'AUR62028768' => 'cqu', 'AUR62028886' => 'cqu', 'AUR62029563' => 'cqu', 'AUR62038832' => 'cqu', 'BcaB01g04149' => 'bca', 'BcaB03g12940' => 'bca', 'BcaB03g13090' => 'bca', 'BcaB03g14466' => 'bca', 'BcaB05g24035' => 'bca', 'BcaC01g06050' => 'bca', 'BcaC04g19148' => 'bca', 'BcaC04g20761' => 'bca', 'BcaC06g32845' => 'bca', 'BcaC07g41274' => 'bca', 'BcaC09g50827' => 'bca', 'BcaNung00741' => 'bca', 'BcaNung00742' => 'bca', 'BcaNung01859' => 'bca', 'BcaNung03985' => 'bca', 'BcaNung03989' => 'bca', 'BcaNung05661' => 'bca', 'BolC1t00257H' => 'bol', 'BolC1t01956H' => 'bol', 'BolC2t06534H' => 'bol', 'BolC3t14334H' => 'bol', 'BolC5t30451H' => 'bol', 'BolC7t45880H' => 'bol', 'BolC7t46586H' => 'bol', 'BolC8t49301H' => 'bol', 'BolC8t51837H' => 'bol', 'BolC9t56822H' => 'bol', 'BolC9t59235H' => 'bol', 'BraA01t00234Z' => 'bra', 'BraA01t01563Z' => 'bra', 'BraA02t05147Z' => 'bra', 'BraA03t10947Z' => 'bra', 'BraA03t14633Z' => 'bra', 'BraA08t35112Z' => 'bra', 'BraA09t41330Z' => 'bra', 'BraA10t44570Z' => 'bra', 'C01p02670' => 'bna', 'C01p20260' => 'bna', 'C02p05890' => 'bna', 'C03p19530' => 'bna', 'C05p17470' => 'bna', 'C07p53900' => 'bna', 'C07p61630' => 'bna', 'C08p16800' => 'bna', 'C08p42810' => 'bna', 'C09p39480' => 'bna', 'C09p63980' => 'bna', 'CAN.G1001.7' => 'can', 'CAN.G1034.55' => 'can', 'CAN.G143.7' => 'can', 'CAN.G3340.1' => 'can', 'CAN.G358.19' => 'can', 'CAN.G373.2' => 'can', 'CAN.G674.16' => 'can', 'CAN.G674.17' => 'can', 'CAN.G674.18' => 'can', 'CAN.G732.2' => 'can', 'CAN.G732.3' => 'can', 'CAN.G993.39' => 'can', 'CANSAT01G2052' => 'cansat', 'CANSAT80G0070' => 'cansat', 'CANSAT80G0483' => 'cansat', 'CANSAT80G0625' => 'cansat', 'CARHR019690' => 'chi', 'CARHR080280' => 'chi', 'CARHR152750' => 'chi', 'CARHR152760' => 'chi', 'CARHR152770' => 'chi', 'CARHR200340' => 'chi', 'CARHR232370' => 'chi', 'CARHR244670' => 'chi', 'CARHR244680' => 'chi', 'CARHR257520' => 'chi', 'Carub.0001s1872' => 'cru', 'Carub.0006s1130' => 'cru', 'Carub.0007s0396' => 'cru', 'Carub.0007s0397' => 'cru', 'Carub.0007s1608' => 'cru', 'Carub.0008s1068' => 'cru', 'Carub.0008s1077' => 'cru', 'Ca_16158_v3' => 'car', 'Ca_17571_v3' => 'car', 'Ca_21936_v3' => 'car', 'Ca_22350_v3' => 'car', 'CBR_g22445' => 'cbr', 'CBR_g26290' => 'cbr', 'Cc04_g09610' => 'ccan', 'Cc04_g12280' => 'ccan', 'Cc07_g10230' => 'ccan', 'CDE02G0093' => 'cde', 'CDE02G0701' => 'cde', 'CDE04G1050' => 'cde', 'CDE05G1833' => 'cde', 'CDE05G3058' => 'cde', 'CDE05G3380' => 'cde', 'CDE06G0536' => 'cde', 'Cfa006923' => 'cfa', 'Cfa009402' => 'cfa', 'Cfa018751' => 'cfa', 'Cfa019164' => 'cfa', 'Cfa022935' => 'cfa', 'Ciclev10019081m.g' => 'ccl', 'Ciclev10025076m.g' => 'ccl', 'Ciclev10030712m.g' => 'ccl', 'Ciclev10033760m.g' => 'ccl', 'CiPaw.05G105600' => 'cil', 'CiPaw.08G136700' => 'cil', 'CiPaw.11G003900' => 'cil', 'CiPaw.11G023700' => 'cil', 'CiPaw.12G003700' => 'cil', 'ClCG06G017100' => 'cla', 'ClCG06G018110' => 'cla', 'ClCG07G008800' => 'cla', 'ClCG07G015330' => 'cla', 'COL.COLO4_13698' => 'col', 'COL.COLO4_16659' => 'col', 'COL.COLO4_21986' => 'col', 'COL.COLO4_24049' => 'col', 'COL.COLO4_29061' => 'col', 'COL.COLO4_29075' => 'col', 'COL.COLO4_30094' => 'col', 'Cpa.g.c33689' => 'cpa', 'Cpa.g.sc108.39' => 'cpa', 'Cpa.g.sc108.41' => 'cpa', 'Cpa.g.sc1163.1' => 'cpa', 'Cpa.g.sc4.155' => 'cpa', 'Cpa.g.sc6.194' => 'cpa', 'CsaV3_1G000340' => 'csa', 'CsaV3_1G001400' => 'csa', 'CsaV3_4G002220' => 'csa', 'CsaV3_4G005370' => 'csa', 'CSS0007487' => 'camsi', 'CSS0008066' => 'camsi', 'CSS0009120' => 'camsi', 'CSS0015512' => 'camsi', 'CSS0022409' => 'camsi', 'CSS0025358' => 'camsi', 'CSS0044547' => 'camsi', 'DCAR_013057' => 'dca', 'DCAR_015058' => 'dca', 'DCAR_016027' => 'dca', 'DCAR_017327' => 'dca', 'DCAR_020743' => 'dca', 'DCAR_026157' => 'dca', 'DCAR_032339' => 'dca', 'DCAR_032340' => 'dca', 'Dinv11200' => 'din', 'Dinv11201' => 'din', 'Dinv20631' => 'din', 'Dinv23182' => 'din', 'Dinv33466' => 'din', 'Dinv33583' => 'din', 'Dinv38565' => 'din', 'Duzib068G0200' => 'dzi', 'Duzib147G0132' => 'dzi', 'Duzib147G0635' => 'dzi', 'Duzib205G1670' => 'dzi', 'Duzib251G0606' => 'dzi', 'ECA232G3336' => 'eca', 'ECA232G3763' => 'eca', 'ECA232G4845' => 'eca', 'ECA234G1607' => 'eca', 'ECA246G0932' => 'eca', 'ECA247G0781' => 'eca', 'ECA247G1932' => 'eca', 'ECA247G2079' => 'eca', 'ECA247G3338' => 'eca', 'ECA247G4115' => 'eca', 'EL10Ac3g06552' => 'bvu', 'EL10Ac5g10721' => 'bvu', 'EL10Ac5g10722' => 'bvu', 'EL10Ac5g10723' => 'bvu', 'EL10Ac5g11361' => 'bvu', 'EL10Ac6g13553' => 'bvu', 'EL10As8g23872' => 'bvu', 'Eucgr.B00250' => 'egr', 'Eucgr.B00251' => 'egr', 'Eucgr.B03533' => 'egr', 'Eucgr.I02381' => 'egr', 'Eucgr.K02700' => 'egr', 'FAN02G0174' => 'fan', 'FAN02G3146' => 'fan', 'FAN04G1672' => 'fan', 'FAN04G2273' => 'fan', 'FAN05G2791' => 'fan', 'FAN05G4035' => 'fan', 'FAN07G0834' => 'fan', 'FAN08G1198' => 'fan', 'FAN09G4182' => 'fan', 'FAN12G0496' => 'fan', 'FAN13G1027' => 'fan', 'FAN13G2951' => 'fan', 'FAN14G0705' => 'fan', 'FAN14G0720' => 'fan', 'FAN17G0201' => 'fan', 'FAN17G2665' => 'fan', 'FAN18G1456' => 'fan', 'FAN18G1525' => 'fan', 'FAN18G3500' => 'fan', 'FAN28G2670' => 'fan', 'FvH4_1g12391' => 'fve', 'FvH4_4g23220' => 'fve', 'FvH4_5g08810' => 'fve', 'FvH4_5g28960' => 'fve', 'FvH4_6g42820' => 'fve', 'FvH4_6g51110' => 'fve', 'Glyma.02G051802' => 'gma', 'Glyma.04G185300' => 'gma', 'Glyma.05G202900' => 'gma', 'Glyma.08G010300' => 'gma', 'Glyma.16G131900' => 'gma', 'Glyma.17G087900' => 'gma', 'Gohir.A07G048600' => 'ghi', 'Gohir.A11G179000' => 'ghi', 'Gohir.A12G140900' => 'ghi', 'Gohir.A12G140950' => 'ghi', 'Gohir.A12G191700' => 'ghi', 'Gohir.A13G086300' => 'ghi', 'Gohir.D07G052900' => 'ghi', 'Gohir.D11G186600' => 'ghi', 'Gohir.D12G145575' => 'ghi', 'Gohir.D12G145650' => 'ghi', 'Gohir.D12G145725' => 'ghi', 'Gohir.D12G194050' => 'ghi', 'Gohir.D13G091800' => 'ghi', 'Gorai.001G055900' => 'gra', 'Gorai.007G198400' => 'gra', 'Gorai.008G157000' => 'gra', 'Gorai.008G157100' => 'gra', 'Gorai.008G208700' => 'gra', 'Gorai.010G138700' => 'gra', 'GSVIVG01000977001' => 'vvi', 'GSVIVG01007708001' => 'vvi', 'GSVIVG01008587001' => 'vvi', 'GSVIVG01018849001' => 'vvi', 'GSVIVG01032432001' => 'vvi', 'HanXRQChr02g0034131' => 'han', 'HanXRQChr02g0035981' => 'han', 'HanXRQChr02g0035991' => 'han', 'HanXRQChr05g0155611' => 'han', 'HanXRQChr05g0155621' => 'han', 'HanXRQChr08g0236501' => 'han', 'HanXRQChr09g0261321' => 'han', 'HanXRQChr09g0272081' => 'han', 'HanXRQChr10g0310741' => 'han', 'HanXRQChr11g0325591' => 'han', 'HanXRQChr12g0385691' => 'han', 'HanXRQChr13g0387801' => 'han', 'HanXRQChr15g0463011' => 'han', 'Haze_03826' => 'cav', 'Haze_03827' => 'cav', 'Haze_07183' => 'cav', 'Haze_07537' => 'cav', 'Haze_07539' => 'cav', 'Haze_12461' => 'cav', 'Haze_16115' => 'cav', 'Haze_16808' => 'cav', 'Haze_18531' => 'cav', 'Hma1.2p1_0046F.1_g026700' => 'hma', 'Hma1.2p1_0046F.1_g026710' => 'hma', 'Hma1.2p1_0168F.1_g074340' => 'hma', 'Hma1.2p1_0266F.1_g107030' => 'hma', 'Hma1.2p1_0266F.1_g107060' => 'hma', 'Hma1.2p1_0275F.1_g110510' => 'hma', 'Hma1.2p1_0592F.1_g185490' => 'hma', 'Hma1.2p1_0592F.1_g185500' => 'hma', 'Hma1.2p1_0592F.1_g185510' => 'hma', 'Hma1.2p1_0592F.1_g185520' => 'hma', 'Hma1.2p1_0592F.1_g185530' => 'hma', 'Hma1.2p1_0818F.1_g223450' => 'hma', 'HPP92_009708' => 'vpl', 'HPP92_009793' => 'vpl', 'HPP92_009796' => 'vpl', 'HPP92_009797' => 'vpl', 'HPP92_014940' => 'vpl', 'HPP92_014988' => 'vpl', 'Hund02463' => 'sun', 'Hund02760' => 'sun', 'Hund05071' => 'sun', 'Hund10108' => 'sun', 'Hund11204' => 'sun', 'Hund14016' => 'sun', 'Hund16464' => 'sun', 'Lalb_Chr09g0333391' => 'lal', 'Lalb_Chr11g0070461' => 'lal', 'Lalb_Chr12g0201671' => 'lal', 'Lalb_Chr13g0297161' => 'lal', 'Lj1g0002823' => 'lja', 'Lj3C1074T6' => 'lonja', 'Lj4A212T28' => 'lonja', 'Lj4g0005516' => 'lja', 'Lj4g0013705' => 'lja', 'Lj4g0027865' => 'lja', 'Lj5C92G16' => 'lonja', 'Lj5C92T12' => 'lonja', 'Lj7C596T3' => 'lonja', 'Lj9A446G59' => 'lonja', 'Lj9A482G21' => 'lonja', 'Lsat_1_v5_gn_1_28261' => 'lsa', 'Lsat_1_v5_gn_1_28281' => 'lsa', 'Lsat_1_v5_gn_1_32721' => 'lsa', 'Lsat_1_v5_gn_4_151760' => 'lsa', 'Lsat_1_v5_gn_4_2120' => 'lsa', 'Lsat_1_v5_gn_4_75761' => 'lsa', 'Lsat_1_v5_gn_5_10920' => 'lsa', 'Manes.02G099900' => 'mes', 'Manes.11G096200' => 'mes', 'Manes.12G007200' => 'mes', 'Manes.14G048300' => 'mes', 'Manes.17G114700' => 'mes', 'Mapoly0002s0070' => 'mpo', 'Mapoly0029s0099' => 'mpo', 'MBI07_g24742_MAGBIO' => 'mbi', 'MBI10_g27988_MAGBIO' => 'mbi', 'MBI11_g13057_MAGBIO' => 'mbi', 'MD02G1137200' => 'mdo', 'MD06G1137200' => 'mdo', 'MD07G1122300' => 'mdo', 'MD09G1078200' => 'mdo', 'MD13G1123700' => 'mdo', 'MD14G1151900' => 'mdo', 'MD17G1030900' => 'mdo', 'MD17G1068200' => 'mdo', 'MD17G1068600' => 'mdo', 'Medtr3g077540' => 'mtr', 'Medtr4g105530' => 'mtr', 'Medtr8g076580' => 'mtr', 'Medtr8g076590' => 'mtr', 'Medtr8g096410' => 'mtr', 'MELO3C016411.2' => 'cme', 'MELO3C017780.2' => 'cme', 'MELO3C022560.2' => 'cme', 'MELO3C026187.2' => 'cme', 'MELO3C026286.2' => 'cme', 'MELO3C032854.2' => 'cme', 'Migut.H02495' => 'egut', 'Migut.I00561' => 'egut', 'Migut.K01015' => 'egut', 'Migut.K01016' => 'egut', 'Migut.L00743' => 'egut', 'Migut.L00744' => 'egut', 'Migut.L00746' => 'egut', 'Migut.L00798' => 'egut', 'Migut.L00799' => 'egut', 'Migut.N02096' => 'egut', 'MSTRG.11259' => 'ama', 'MSTRG.23142' => 'ama', 'MSTRG.2499' => 'ama', 'Nitab4.5_0000003g0730' => 'nta', 'Nitab4.5_0000137g0020' => 'nta', 'Nitab4.5_0000721g0210' => 'nta', 'Nitab4.5_0000723g0050' => 'nta', 'Nitab4.5_0000913g0070' => 'nta', 'Nitab4.5_0001332g0040' => 'nta', 'Nitab4.5_0001771g0050' => 'nta', 'Nitab4.5_0001918g0050' => 'nta', 'Nitab4.5_0002686g0030' => 'nta', 'Nitab4.5_0003156g0020' => 'nta', 'Nitab4.5_0003383g0040' => 'nta', 'Nitab4.5_0003918g0010' => 'nta', 'Nitab4.5_0006760g0010' => 'nta', 'Nn1g05981' => 'nnu', 'Nn1g06288' => 'nnu', 'Nn3g16371' => 'nnu', 'Nn3g16786' => 'nnu', 'Nn4g22232' => 'nnu', 'Oeu005144.1' => 'oeu', 'Oeu005145.1' => 'oeu', 'Oeu011348.1' => 'oeu', 'Oeu016415.1' => 'oeu', 'Oeu023501.1' => 'oeu', 'Oeu044473.1' => 'oeu', 'Oeu048892.2' => 'oeu', 'Os01g0549200' => 'osa', 'Os02g0469300' => 'osa', 'Os04g0311100' => 'osa', 'Os06g0474900' => 'osa', 'Os10g0181700' => 'osa', 'Os11g0454800' => 'osa', 'Peaxi162Scf00037g00714' => 'pax', 'Peaxi162Scf00084g01217' => 'pax', 'Peaxi162Scf00257g00217' => 'pax', 'Peaxi162Scf00516g00215' => 'pax', 'Peaxi162Scf00689g00123' => 'pax', 'PGR044G2719' => 'pgr', 'PGR083G1360' => 'pgr', 'PGR102G2849' => 'pgr', 'PGR119G2534' => 'pgr', 'PGSC0003DMG400003538' => 'stu', 'PGSC0003DMG400028138' => 'stu', 'PGSC0003DMG400031732' => 'stu', 'PGSC0003DMG400038165' => 'stu', 'Phvul.002G284600' => 'pvu', 'Phvul.003G258200' => 'pvu', 'Phvul.009G176500' => 'pvu', 'Potri.003G167201' => 'ptr', 'Potri.005G118400' => 'ptr', 'Potri.012G089000' => 'ptr', 'Potri.012G102800' => 'ptr', 'Potri.015G079400' => 'ptr', 'Potri.015G100900' => 'ptr', 'Pp3c14_9810' => 'ppa', 'Pp3c15_10450' => 'ppa', 'Pp3c20_19150' => 'ppa', 'Pp3c23_12740' => 'ppa', 'Pp3c23_6310' => 'ppa', 'Pp3c24_3720' => 'ppa', 'Pp3c27_2580' => 'ppa', 'Pp3c9_8990' => 'ppa', 'PRCOL_00002854' => 'pco', 'Prupe.1G221200' => 'ppe', 'Prupe.3G289000' => 'ppe', 'Prupe.5G147000' => 'ppe', 'Prupe.6G157300' => 'ppe', 'Prupe.7G163400' => 'ppe', 'Psat0s2177g0040' => 'psa', 'Psat3g174760' => 'psa', 'Psat3g192160' => 'psa', 'Psat4g058520' => 'psa', 'Psat4g096840' => 'psa', 'Psat7g037320' => 'psa', 'PSO017G1274' => 'pso', 'PSO017G5166' => 'pso', 'PSO063G4558' => 'pso', 'PSO170G4458' => 'pso', 'PSO170G5005' => 'pso', 'PSO210G6156' => 'pso', 'PSO210G6635' => 'pso', 'PSO210G7397' => 'pso', 'PSO210G7700' => 'pso', 'PSO455G0035' => 'pso', 'PSO455G0180' => 'pso', 'PSO478G4515' => 'pso', 'PSO832G1305' => 'pso', 'PSO832G3489' => 'pso', 'QL02p075247' => 'qlo', 'QL03p051148' => 'qlo', 'QL05p010313' => 'qlo', 'QL06p034627' => 'qlo', 'QL10p001889' => 'qlo', 'QL10p010846' => 'qlo', 'RcHm_v2.0_Chr1g0350621' => 'rch', 'RcHm_v2.0_Chr1g0350641' => 'rch', 'RcHm_v2.0_Chr2g0092891' => 'rch', 'RcHm_v2.0_Chr2g0100251' => 'rch', 'RcHm_v2.0_Chr2g0158661' => 'rch', 'RcHm_v2.0_Chr2g0172741' => 'rch', 'RcHm_v2.0_Chr4g0429571' => 'rch', 'RcHm_v2.0_Chr5g0042471' => 'rch', 'RcHm_v2.0_Chr7g0189451' => 'rch', 'Rhsim08G0052000' => 'rsi', 'Rhsim08G0174400' => 'rsi', 'Rhsim08G0193200' => 'rsi', 'Rhsim10G0214800' => 'rsi', 'Rhsim10G0214900' => 'rsi', 'Rhsim10G0215000' => 'rsi', 'Rhsim12G0022900' => 'rsi', 'Rhsim12G0177500' => 'rsi', 'Rhsim12G0177700' => 'rsi', 'Sabra03G0122600' => 'sbr', 'Sabra05G0097400' => 'sbr', 'Sabra12G0064100' => 'sbr', 'Sabra15G0121300' => 'sbr', 'SalBow2G0642' => 'sbo', 'SalBow5G2667' => 'sbo', 'SalBow5G4873' => 'sbo', 'SalBow8G2395' => 'sbo', 'Sc03g0003290' => 'sci', 'Sc10g0010130' => 'sci', 'Sc22g0003650' => 'sci', 'Sed0001603' => 'sed', 'Sed0004259' => 'sed', 'Sed0006789' => 'sed', 'Sed0011838' => 'sed', 'Sed0012964' => 'sed', 'Sed0016383' => 'sed', 'Sed0019010' => 'sed', 'Sed0020188' => 'sed', 'SEGI_04702' => 'sgi', 'SEGI_17231' => 'sgi', 'SEGI_18877' => 'sgi', 'SEGI_25196' => 'sgi', 'SEGI_25515' => 'sgi', 'SEGI_28445' => 'sgi', 'SEGI_37452' => 'sgi', 'SGA_v2.0_scaffold188G40336' => 'sas', 'SGA_v2.0_scaffold228G43247' => 'sas', 'SGA_v2.0_scaffold280G46853' => 'sas', 'SGA_v2.0_scaffold34G13808' => 'sas', 'SGA_v2.0_scaffold40G15576' => 'sas', 'SGA_v2.0_scaffold611G53188' => 'sas', 'SGA_v2.0_scaffold78G25461' => 'sas', 'SGA_v2.0_scaffold90G27888' => 'sas', 'SHI08601' => 'shi', 'SHI08606' => 'shi', 'SHI17117' => 'shi', 'SHI17119' => 'shi', 'SMO118G0201' => 'smo', 'SMO169G0247' => 'smo', 'SMO176G0006' => 'smo', 'SMO176G0015' => 'smo', 'SMO202G0006' => 'smo', 'SMO240G0050' => 'smo', 'SMO286G0009' => 'smo', 'SMO338G0033' => 'smo', 'SMO356G0533' => 'smo', 'SMO364G0382' => 'smo', 'SMO367G0166' => 'smo', 'SMO367G1098' => 'smo', 'Solyc01g009920.3' => 'sly', 'Solyc01g099300.3' => 'sly', 'Solyc02g084700.3' => 'sly', 'Solyc03g097520.3' => 'sly', 'Solyc06g071580.3' => 'sly', 'Solyc10g081760.3' => 'sly', 'Sopen01g005480' => 'spe', 'Sopen01g042850' => 'spe', 'Sopen02g029370' => 'spe', 'Sopen03g028280' => 'spe', 'Sopen06g027870' => 'spe', 'Sopen10g032270' => 'spe', 'Sp5g18180' => 'spa', 'Sp6g12880' => 'spa', 'Sp6g30850' => 'spa', 'Sp7g22960' => 'spa', 'Sp7g34010' => 'spa', 'SpUn1326_0010' => 'spa', 'TAR371G0242' => 'tar', 'TAR622G0638' => 'tar', 'TAR628G1548' => 'tar', 'TAR629G1079' => 'tar', 'TAR629G3413' => 'tar', 'THA.LOC104804249' => 'tha', 'THA.LOC104808315' => 'tha', 'THA.LOC104809238' => 'tha', 'THA.LOC104825484' => 'tha', 'Thecc.01G025500' => 'tca', 'Thecc.03G015800' => 'tca', 'Thecc.03G018000' => 'tca', 'Thecc.03G134800' => 'tca', 'Thecc.04G014700' => 'tca', 'Thhalv10006991m.g' => 'esa', 'Thhalv10012707m.g' => 'esa', 'Thhalv10015739m.g' => 'esa', 'Thhalv10024553m.g' => 'esa', 'Thhalv10024673m.g' => 'esa', 'Thhalv10029187m.g' => 'esa', 'TPR.G12971' => 'tpr', 'TPR.G29396' => 'tpr', 'TPR.G33376' => 'tpr', 'TPR.G35508' => 'tpr', 'TPR.G35516' => 'tpr', 'TPR.G37317' => 'tpr', 'TPR.G37389' => 'tpr', 'TPR.G37523' => 'tpr', 'TPR.G559' => 'tpr', 'TWI14G0070' => 'twi', 'TWI14G0729' => 'twi', 'TWI18G0596' => 'twi', 'TWI39G0780' => 'twi', 'TWI39G0850' => 'twi', 'TWI73G1052' => 'twi', 'unitig_52.g17485' => 'ugi', 'unitig_61.g26355' => 'ugi', 'vmacro01040' => 'vma', 'vmacro16731' => 'vma', 'vmacro18270' => 'vma', 'vmacro19142' => 'vma', 'vmacro19407' => 'vma', 'vmacro19408' => 'vma', 'vmacro21899' => 'vma', 'vmacro21900' => 'vma', 'vmacro21901' => 'vma', 'VMungo0251G0490' => 'vmu', 'VMungo0251G1748' => 'vmu', 'VMungo1309G0421' => 'vmu', 'Zm00001eb086500' => 'zma', 'Zm00001eb150680' => 'zma', 'Zm00001eb162330' => 'zma', 'Zm00001eb203130' => 'zma', 'Zm00001eb369480' => 'zma', 'Zm00001eb382340' => 'zma', 'Zm00001eb416360' => 'zma' ), 'gf_id' => 'HOM05D000902', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000902' ), 'data_identifier' => 'HOM05D000902', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000902', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '663', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02470' => 'bna', 'A01p16260' => 'bna', 'A02p01680' => 'bna', 'A03p16600' => 'bna', 'A03p55660' => 'bna', 'A03p64160' => 'bna', 'A03p64170' => 'bna', 'A08p31900' => 'bna', 'A09p59530' => 'bna', 'A10p08230' => 'bna', 'A10p25090' => 'bna', 'Aa31LG3G7100' => 'aar', 'Aa31LG3G7110' => 'aar', 'Aa31LG6G13160' => 'aar', 'Aa31LG7G10770' => 'aar', 'Aa31LG7G3830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2723' => 'aag', 'Actinidia08045' => 'ach', 'Actinidia08888' => 'ach', 'Actinidia18333' => 'ach', 'Actinidia19334' => 'ach', 'Actinidia25552' => 'ach', 'Actinidia26089' => 'ach', 'Actinidia30615' => 'ach', 'Actinidia30616' => 'ach', 'Actinidia33083' => 'ach', 'Actinidia35762' => 'ach', 'Ah.02g110620' => 'amhyb', 'Ah.11g046390' => 'amhyb', 'AL1G31670' => 'aly', 'AL6G23730' => 'aly', 'AL7G14740' => 'aly', 'AL7G14750' => 'aly', 'AL7G14760' => 'aly', 'AL7G28220' => 'aly', 'AL8G24940' => 'aly', 'Aqoxy3G01665' => 'aox', 'Aqoxy3G02853' => 'aox', 'Aqoxy5G01513' => 'aox', 'Aqoxy5G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8SKA4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ75LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKDA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0LJZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7REX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZP4YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWX7I5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2QKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS0L9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPCD8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q161UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC7XCF' => 'arhy', 'AT1G19100' => 'ath', 'AT4G24970' => 'ath', 'AT4G36270' => 'ath', 'AT4G36280' => 'ath', 'AT4G36290' => 'ath', 'AT5G13130' => 'ath', 'AT5G50780' => 'ath', 'ATR0582G266' => 'atr', 'ATR0661G195' => 'atr', 'ATR1152G031' => 'atr', 'Atru.chr11.2382' => 'acertr', 'Atru.chr12.2337' => 'acertr', 'Atru.chr3.744' => 'acertr', 'Atru.chr6.1870' => 'acertr', 'Atru.chr9.2515' => 'acertr', 'AUR62004120' => 'cqu', 'AUR62005667' => 'cqu', 'AUR62007634' => 'cqu', 'AUR62008186' => 'cqu', 'AUR62008187' => 'cqu', 'AUR62008188' => 'cqu', 'AUR62027954' => 'cqu', 'AUR62028766' => 'cqu', 'AUR62028767' => 'cqu', 'AUR62028768' => 'cqu', 'AUR62028886' => 'cqu', 'AUR62029563' => 'cqu', 'AUR62038832' => 'cqu', 'BcaB01g04149' => 'bca', 'BcaB03g12940' => 'bca', 'BcaB03g13090' => 'bca', 'BcaB03g14466' => 'bca', 'BcaB05g24035' => 'bca', 'BcaC01g06050' => 'bca', 'BcaC04g19148' => 'bca', 'BcaC04g20761' => 'bca', 'BcaC06g32845' => 'bca', 'BcaC07g41274' => 'bca', 'BcaC09g50827' => 'bca', 'BcaNung00741' => 'bca', 'BcaNung00742' => 'bca', 'BcaNung01859' => 'bca', 'BcaNung03985' => 'bca', 'BcaNung03989' => 'bca', 'BcaNung05661' => 'bca', 'BolC1t00257H' => 'bol', 'BolC1t01956H' => 'bol', 'BolC2t06534H' => 'bol', 'BolC3t14334H' => 'bol', 'BolC5t30451H' => 'bol', 'BolC7t45880H' => 'bol', 'BolC7t46586H' => 'bol', 'BolC8t49301H' => 'bol', 'BolC8t51837H' => 'bol', 'BolC9t56822H' => 'bol', 'BolC9t59235H' => 'bol', 'BraA01t00234Z' => 'bra', 'BraA01t01563Z' => 'bra', 'BraA02t05147Z' => 'bra', 'BraA03t10947Z' => 'bra', 'BraA03t14633Z' => 'bra', 'BraA08t35112Z' => 'bra', 'BraA09t41330Z' => 'bra', 'BraA10t44570Z' => 'bra', 'C01p02670' => 'bna', 'C01p20260' => 'bna', 'C02p05890' => 'bna', 'C03p19530' => 'bna', 'C05p17470' => 'bna', 'C07p53900' => 'bna', 'C07p61630' => 'bna', 'C08p16800' => 'bna', 'C08p42810' => 'bna', 'C09p39480' => 'bna', 'C09p63980' => 'bna', 'CAN.G1001.7' => 'can', 'CAN.G1034.55' => 'can', 'CAN.G143.7' => 'can', 'CAN.G3340.1' => 'can', 'CAN.G358.19' => 'can', 'CAN.G373.2' => 'can', 'CAN.G674.16' => 'can', 'CAN.G674.17' => 'can', 'CAN.G674.18' => 'can', 'CAN.G732.2' => 'can', 'CAN.G732.3' => 'can', 'CAN.G993.39' => 'can', 'CANSAT01G2052' => 'cansat', 'CANSAT80G0070' => 'cansat', 'CANSAT80G0483' => 'cansat', 'CANSAT80G0625' => 'cansat', 'CARHR019690' => 'chi', 'CARHR080280' => 'chi', 'CARHR152750' => 'chi', 'CARHR152760' => 'chi', 'CARHR152770' => 'chi', 'CARHR200340' => 'chi', 'CARHR232370' => 'chi', 'CARHR244670' => 'chi', 'CARHR244680' => 'chi', 'CARHR257520' => 'chi', 'Carub.0001s1872' => 'cru', 'Carub.0006s1130' => 'cru', 'Carub.0007s0396' => 'cru', 'Carub.0007s0397' => 'cru', 'Carub.0007s1608' => 'cru', 'Carub.0008s1068' => 'cru', 'Carub.0008s1077' => 'cru', 'Ca_16158_v3' => 'car', 'Ca_17571_v3' => 'car', 'Ca_21936_v3' => 'car', 'Ca_22350_v3' => 'car', 'CBR_g22445' => 'cbr', 'CBR_g26290' => 'cbr', 'Cc04_g09610' => 'ccan', 'Cc04_g12280' => 'ccan', 'Cc07_g10230' => 'ccan', 'CDE02G0093' => 'cde', 'CDE02G0701' => 'cde', 'CDE04G1050' => 'cde', 'CDE05G1833' => 'cde', 'CDE05G3058' => 'cde', 'CDE05G3380' => 'cde', 'CDE06G0536' => 'cde', 'Cfa006923' => 'cfa', 'Cfa009402' => 'cfa', 'Cfa018751' => 'cfa', 'Cfa019164' => 'cfa', 'Cfa022935' => 'cfa', 'Ciclev10019081m.g' => 'ccl', 'Ciclev10025076m.g' => 'ccl', 'Ciclev10030712m.g' => 'ccl', 'Ciclev10033760m.g' => 'ccl', 'CiPaw.05G105600' => 'cil', 'CiPaw.08G136700' => 'cil', 'CiPaw.11G003900' => 'cil', 'CiPaw.11G023700' => 'cil', 'CiPaw.12G003700' => 'cil', 'ClCG06G017100' => 'cla', 'ClCG06G018110' => 'cla', 'ClCG07G008800' => 'cla', 'ClCG07G015330' => 'cla', 'COL.COLO4_13698' => 'col', 'COL.COLO4_16659' => 'col', 'COL.COLO4_21986' => 'col', 'COL.COLO4_24049' => 'col', 'COL.COLO4_29061' => 'col', 'COL.COLO4_29075' => 'col', 'COL.COLO4_30094' => 'col', 'Cpa.g.c33689' => 'cpa', 'Cpa.g.sc108.39' => 'cpa', 'Cpa.g.sc108.41' => 'cpa', 'Cpa.g.sc1163.1' => 'cpa', 'Cpa.g.sc4.155' => 'cpa', 'Cpa.g.sc6.194' => 'cpa', 'CsaV3_1G000340' => 'csa', 'CsaV3_1G001400' => 'csa', 'CsaV3_4G002220' => 'csa', 'CsaV3_4G005370' => 'csa', 'CSS0007487' => 'camsi', 'CSS0008066' => 'camsi', 'CSS0009120' => 'camsi', 'CSS0015512' => 'camsi', 'CSS0022409' => 'camsi', 'CSS0025358' => 'camsi', 'CSS0044547' => 'camsi', 'DCAR_013057' => 'dca', 'DCAR_015058' => 'dca', 'DCAR_016027' => 'dca', 'DCAR_017327' => 'dca', 'DCAR_020743' => 'dca', 'DCAR_026157' => 'dca', 'DCAR_032339' => 'dca', 'DCAR_032340' => 'dca', 'Dinv11200' => 'din', 'Dinv11201' => 'din', 'Dinv20631' => 'din', 'Dinv23182' => 'din', 'Dinv33466' => 'din', 'Dinv33583' => 'din', 'Dinv38565' => 'din', 'Duzib068G0200' => 'dzi', 'Duzib147G0132' => 'dzi', 'Duzib147G0635' => 'dzi', 'Duzib205G1670' => 'dzi', 'Duzib251G0606' => 'dzi', 'ECA232G3336' => 'eca', 'ECA232G3763' => 'eca', 'ECA232G4845' => 'eca', 'ECA234G1607' => 'eca', 'ECA246G0932' => 'eca', 'ECA247G0781' => 'eca', 'ECA247G1932' => 'eca', 'ECA247G2079' => 'eca', 'ECA247G3338' => 'eca', 'ECA247G4115' => 'eca', 'EL10Ac3g06552' => 'bvu', 'EL10Ac5g10721' => 'bvu', 'EL10Ac5g10722' => 'bvu', 'EL10Ac5g10723' => 'bvu', 'EL10Ac5g11361' => 'bvu', 'EL10Ac6g13553' => 'bvu', 'EL10As8g23872' => 'bvu', 'Eucgr.B00250' => 'egr', 'Eucgr.B00251' => 'egr', 'Eucgr.B03533' => 'egr', 'Eucgr.I02381' => 'egr', 'Eucgr.K02700' => 'egr', 'FAN02G0174' => 'fan', 'FAN02G3146' => 'fan', 'FAN04G1672' => 'fan', 'FAN04G2273' => 'fan', 'FAN05G2791' => 'fan', 'FAN05G4035' => 'fan', 'FAN07G0834' => 'fan', 'FAN08G1198' => 'fan', 'FAN09G4182' => 'fan', 'FAN12G0496' => 'fan', 'FAN13G1027' => 'fan', 'FAN13G2951' => 'fan', 'FAN14G0705' => 'fan', 'FAN14G0720' => 'fan', 'FAN17G0201' => 'fan', 'FAN17G2665' => 'fan', 'FAN18G1456' => 'fan', 'FAN18G1525' => 'fan', 'FAN18G3500' => 'fan', 'FAN28G2670' => 'fan', 'FvH4_1g12391' => 'fve', 'FvH4_4g23220' => 'fve', 'FvH4_5g08810' => 'fve', 'FvH4_5g28960' => 'fve', 'FvH4_6g42820' => 'fve', 'FvH4_6g51110' => 'fve', 'Glyma.02G051802' => 'gma', 'Glyma.04G185300' => 'gma', 'Glyma.05G202900' => 'gma', 'Glyma.08G010300' => 'gma', 'Glyma.16G131900' => 'gma', 'Glyma.17G087900' => 'gma', 'Gohir.A07G048600' => 'ghi', 'Gohir.A11G179000' => 'ghi', 'Gohir.A12G140900' => 'ghi', 'Gohir.A12G140950' => 'ghi', 'Gohir.A12G191700' => 'ghi', 'Gohir.A13G086300' => 'ghi', 'Gohir.D07G052900' => 'ghi', 'Gohir.D11G186600' => 'ghi', 'Gohir.D12G145575' => 'ghi', 'Gohir.D12G145650' => 'ghi', 'Gohir.D12G145725' => 'ghi', 'Gohir.D12G194050' => 'ghi', 'Gohir.D13G091800' => 'ghi', 'Gorai.001G055900' => 'gra', 'Gorai.007G198400' => 'gra', 'Gorai.008G157000' => 'gra', 'Gorai.008G157100' => 'gra', 'Gorai.008G208700' => 'gra', 'Gorai.010G138700' => 'gra', 'GSVIVG01000977001' => 'vvi', 'GSVIVG01007708001' => 'vvi', 'GSVIVG01008587001' => 'vvi', 'GSVIVG01018849001' => 'vvi', 'GSVIVG01032432001' => 'vvi', 'HanXRQChr02g0034131' => 'han', 'HanXRQChr02g0035981' => 'han', 'HanXRQChr02g0035991' => 'han', 'HanXRQChr05g0155611' => 'han', 'HanXRQChr05g0155621' => 'han', 'HanXRQChr08g0236501' => 'han', 'HanXRQChr09g0261321' => 'han', 'HanXRQChr09g0272081' => 'han', 'HanXRQChr10g0310741' => 'han', 'HanXRQChr11g0325591' => 'han', 'HanXRQChr12g0385691' => 'han', 'HanXRQChr13g0387801' => 'han', 'HanXRQChr15g0463011' => 'han', 'Haze_03826' => 'cav', 'Haze_03827' => 'cav', 'Haze_07183' => 'cav', 'Haze_07537' => 'cav', 'Haze_07539' => 'cav', 'Haze_12461' => 'cav', 'Haze_16115' => 'cav', 'Haze_16808' => 'cav', 'Haze_18531' => 'cav', 'Hma1.2p1_0046F.1_g026700' => 'hma', 'Hma1.2p1_0046F.1_g026710' => 'hma', 'Hma1.2p1_0168F.1_g074340' => 'hma', 'Hma1.2p1_0266F.1_g107030' => 'hma', 'Hma1.2p1_0266F.1_g107060' => 'hma', 'Hma1.2p1_0275F.1_g110510' => 'hma', 'Hma1.2p1_0592F.1_g185490' => 'hma', 'Hma1.2p1_0592F.1_g185500' => 'hma', 'Hma1.2p1_0592F.1_g185510' => 'hma', 'Hma1.2p1_0592F.1_g185520' => 'hma', 'Hma1.2p1_0592F.1_g185530' => 'hma', 'Hma1.2p1_0818F.1_g223450' => 'hma', 'HPP92_009708' => 'vpl', 'HPP92_009793' => 'vpl', 'HPP92_009796' => 'vpl', 'HPP92_009797' => 'vpl', 'HPP92_014940' => 'vpl', 'HPP92_014988' => 'vpl', 'Hund02463' => 'sun', 'Hund02760' => 'sun', 'Hund05071' => 'sun', 'Hund10108' => 'sun', 'Hund11204' => 'sun', 'Hund14016' => 'sun', 'Hund16464' => 'sun', 'Lalb_Chr09g0333391' => 'lal', 'Lalb_Chr11g0070461' => 'lal', 'Lalb_Chr12g0201671' => 'lal', 'Lalb_Chr13g0297161' => 'lal', 'Lj1g0002823' => 'lja', 'Lj3C1074T6' => 'lonja', 'Lj4A212T28' => 'lonja', 'Lj4g0005516' => 'lja', 'Lj4g0013705' => 'lja', 'Lj4g0027865' => 'lja', 'Lj5C92G16' => 'lonja', 'Lj5C92T12' => 'lonja', 'Lj7C596T3' => 'lonja', 'Lj9A446G59' => 'lonja', 'Lj9A482G21' => 'lonja', 'Lsat_1_v5_gn_1_28261' => 'lsa', 'Lsat_1_v5_gn_1_28281' => 'lsa', 'Lsat_1_v5_gn_1_32721' => 'lsa', 'Lsat_1_v5_gn_4_151760' => 'lsa', 'Lsat_1_v5_gn_4_2120' => 'lsa', 'Lsat_1_v5_gn_4_75761' => 'lsa', 'Lsat_1_v5_gn_5_10920' => 'lsa', 'Manes.02G099900' => 'mes', 'Manes.11G096200' => 'mes', 'Manes.12G007200' => 'mes', 'Manes.14G048300' => 'mes', 'Manes.17G114700' => 'mes', 'Mapoly0002s0070' => 'mpo', 'Mapoly0029s0099' => 'mpo', 'MBI07_g24742_MAGBIO' => 'mbi', 'MBI10_g27988_MAGBIO' => 'mbi', 'MBI11_g13057_MAGBIO' => 'mbi', 'MD02G1137200' => 'mdo', 'MD06G1137200' => 'mdo', 'MD07G1122300' => 'mdo', 'MD09G1078200' => 'mdo', 'MD13G1123700' => 'mdo', 'MD14G1151900' => 'mdo', 'MD17G1030900' => 'mdo', 'MD17G1068200' => 'mdo', 'MD17G1068600' => 'mdo', 'Medtr3g077540' => 'mtr', 'Medtr4g105530' => 'mtr', 'Medtr8g076580' => 'mtr', 'Medtr8g076590' => 'mtr', 'Medtr8g096410' => 'mtr', 'MELO3C016411.2' => 'cme', 'MELO3C017780.2' => 'cme', 'MELO3C022560.2' => 'cme', 'MELO3C026187.2' => 'cme', 'MELO3C026286.2' => 'cme', 'MELO3C032854.2' => 'cme', 'Migut.H02495' => 'egut', 'Migut.I00561' => 'egut', 'Migut.K01015' => 'egut', 'Migut.K01016' => 'egut', 'Migut.L00743' => 'egut', 'Migut.L00744' => 'egut', 'Migut.L00746' => 'egut', 'Migut.L00798' => 'egut', 'Migut.L00799' => 'egut', 'Migut.N02096' => 'egut', 'MSTRG.11259' => 'ama', 'MSTRG.23142' => 'ama', 'MSTRG.2499' => 'ama', 'Nitab4.5_0000003g0730' => 'nta', 'Nitab4.5_0000137g0020' => 'nta', 'Nitab4.5_0000721g0210' => 'nta', 'Nitab4.5_0000723g0050' => 'nta', 'Nitab4.5_0000913g0070' => 'nta', 'Nitab4.5_0001332g0040' => 'nta', 'Nitab4.5_0001771g0050' => 'nta', 'Nitab4.5_0001918g0050' => 'nta', 'Nitab4.5_0002686g0030' => 'nta', 'Nitab4.5_0003156g0020' => 'nta', 'Nitab4.5_0003383g0040' => 'nta', 'Nitab4.5_0003918g0010' => 'nta', 'Nitab4.5_0006760g0010' => 'nta', 'Nn1g05981' => 'nnu', 'Nn1g06288' => 'nnu', 'Nn3g16371' => 'nnu', 'Nn3g16786' => 'nnu', 'Nn4g22232' => 'nnu', 'Oeu005144.1' => 'oeu', 'Oeu005145.1' => 'oeu', 'Oeu011348.1' => 'oeu', 'Oeu016415.1' => 'oeu', 'Oeu023501.1' => 'oeu', 'Oeu044473.1' => 'oeu', 'Oeu048892.2' => 'oeu', 'Os01g0549200' => 'osa', 'Os02g0469300' => 'osa', 'Os04g0311100' => 'osa', 'Os06g0474900' => 'osa', 'Os10g0181700' => 'osa', 'Os11g0454800' => 'osa', 'Peaxi162Scf00037g00714' => 'pax', 'Peaxi162Scf00084g01217' => 'pax', 'Peaxi162Scf00257g00217' => 'pax', 'Peaxi162Scf00516g00215' => 'pax', 'Peaxi162Scf00689g00123' => 'pax', 'PGR044G2719' => 'pgr', 'PGR083G1360' => 'pgr', 'PGR102G2849' => 'pgr', 'PGR119G2534' => 'pgr', 'PGSC0003DMG400003538' => 'stu', 'PGSC0003DMG400028138' => 'stu', 'PGSC0003DMG400031732' => 'stu', 'PGSC0003DMG400038165' => 'stu', 'Phvul.002G284600' => 'pvu', 'Phvul.003G258200' => 'pvu', 'Phvul.009G176500' => 'pvu', 'Potri.003G167201' => 'ptr', 'Potri.005G118400' => 'ptr', 'Potri.012G089000' => 'ptr', 'Potri.012G102800' => 'ptr', 'Potri.015G079400' => 'ptr', 'Potri.015G100900' => 'ptr', 'Pp3c14_9810' => 'ppa', 'Pp3c15_10450' => 'ppa', 'Pp3c20_19150' => 'ppa', 'Pp3c23_12740' => 'ppa', 'Pp3c23_6310' => 'ppa', 'Pp3c24_3720' => 'ppa', 'Pp3c27_2580' => 'ppa', 'Pp3c9_8990' => 'ppa', 'PRCOL_00002854' => 'pco', 'Prupe.1G221200' => 'ppe', 'Prupe.3G289000' => 'ppe', 'Prupe.5G147000' => 'ppe', 'Prupe.6G157300' => 'ppe', 'Prupe.7G163400' => 'ppe', 'Psat0s2177g0040' => 'psa', 'Psat3g174760' => 'psa', 'Psat3g192160' => 'psa', 'Psat4g058520' => 'psa', 'Psat4g096840' => 'psa', 'Psat7g037320' => 'psa', 'PSO017G1274' => 'pso', 'PSO017G5166' => 'pso', 'PSO063G4558' => 'pso', 'PSO170G4458' => 'pso', 'PSO170G5005' => 'pso', 'PSO210G6156' => 'pso', 'PSO210G6635' => 'pso', 'PSO210G7397' => 'pso', 'PSO210G7700' => 'pso', 'PSO455G0035' => 'pso', 'PSO455G0180' => 'pso', 'PSO478G4515' => 'pso', 'PSO832G1305' => 'pso', 'PSO832G3489' => 'pso', 'QL02p075247' => 'qlo', 'QL03p051148' => 'qlo', 'QL05p010313' => 'qlo', 'QL06p034627' => 'qlo', 'QL10p001889' => 'qlo', 'QL10p010846' => 'qlo', 'RcHm_v2.0_Chr1g0350621' => 'rch', 'RcHm_v2.0_Chr1g0350641' => 'rch', 'RcHm_v2.0_Chr2g0092891' => 'rch', 'RcHm_v2.0_Chr2g0100251' => 'rch', 'RcHm_v2.0_Chr2g0158661' => 'rch', 'RcHm_v2.0_Chr2g0172741' => 'rch', 'RcHm_v2.0_Chr4g0429571' => 'rch', 'RcHm_v2.0_Chr5g0042471' => 'rch', 'RcHm_v2.0_Chr7g0189451' => 'rch', 'Rhsim08G0052000' => 'rsi', 'Rhsim08G0174400' => 'rsi', 'Rhsim08G0193200' => 'rsi', 'Rhsim10G0214800' => 'rsi', 'Rhsim10G0214900' => 'rsi', 'Rhsim10G0215000' => 'rsi', 'Rhsim12G0022900' => 'rsi', 'Rhsim12G0177500' => 'rsi', 'Rhsim12G0177700' => 'rsi', 'Sabra03G0122600' => 'sbr', 'Sabra05G0097400' => 'sbr', 'Sabra12G0064100' => 'sbr', 'Sabra15G0121300' => 'sbr', 'SalBow2G0642' => 'sbo', 'SalBow5G2667' => 'sbo', 'SalBow5G4873' => 'sbo', 'SalBow8G2395' => 'sbo', 'Sc03g0003290' => 'sci', 'Sc10g0010130' => 'sci', 'Sc22g0003650' => 'sci', 'Sed0001603' => 'sed', 'Sed0004259' => 'sed', 'Sed0006789' => 'sed', 'Sed0011838' => 'sed', 'Sed0012964' => 'sed', 'Sed0016383' => 'sed', 'Sed0019010' => 'sed', 'Sed0020188' => 'sed', 'SEGI_04702' => 'sgi', 'SEGI_17231' => 'sgi', 'SEGI_18877' => 'sgi', 'SEGI_25196' => 'sgi', 'SEGI_25515' => 'sgi', 'SEGI_28445' => 'sgi', 'SEGI_37452' => 'sgi', 'SGA_v2.0_scaffold188G40336' => 'sas', 'SGA_v2.0_scaffold228G43247' => 'sas', 'SGA_v2.0_scaffold280G46853' => 'sas', 'SGA_v2.0_scaffold34G13808' => 'sas', 'SGA_v2.0_scaffold40G15576' => 'sas', 'SGA_v2.0_scaffold611G53188' => 'sas', 'SGA_v2.0_scaffold78G25461' => 'sas', 'SGA_v2.0_scaffold90G27888' => 'sas', 'SHI08601' => 'shi', 'SHI08606' => 'shi', 'SHI17117' => 'shi', 'SHI17119' => 'shi', 'SMO118G0201' => 'smo', 'SMO169G0247' => 'smo', 'SMO176G0006' => 'smo', 'SMO176G0015' => 'smo', 'SMO202G0006' => 'smo', 'SMO240G0050' => 'smo', 'SMO286G0009' => 'smo', 'SMO338G0033' => 'smo', 'SMO356G0533' => 'smo', 'SMO364G0382' => 'smo', 'SMO367G0166' => 'smo', 'SMO367G1098' => 'smo', 'Solyc01g009920.3' => 'sly', 'Solyc01g099300.3' => 'sly', 'Solyc02g084700.3' => 'sly', 'Solyc03g097520.3' => 'sly', 'Solyc06g071580.3' => 'sly', 'Solyc10g081760.3' => 'sly', 'Sopen01g005480' => 'spe', 'Sopen01g042850' => 'spe', 'Sopen02g029370' => 'spe', 'Sopen03g028280' => 'spe', 'Sopen06g027870' => 'spe', 'Sopen10g032270' => 'spe', 'Sp5g18180' => 'spa', 'Sp6g12880' => 'spa', 'Sp6g30850' => 'spa', 'Sp7g22960' => 'spa', 'Sp7g34010' => 'spa', 'SpUn1326_0010' => 'spa', 'TAR371G0242' => 'tar', 'TAR622G0638' => 'tar', 'TAR628G1548' => 'tar', 'TAR629G1079' => 'tar', 'TAR629G3413' => 'tar', 'THA.LOC104804249' => 'tha', 'THA.LOC104808315' => 'tha', 'THA.LOC104809238' => 'tha', 'THA.LOC104825484' => 'tha', 'Thecc.01G025500' => 'tca', 'Thecc.03G015800' => 'tca', 'Thecc.03G018000' => 'tca', 'Thecc.03G134800' => 'tca', 'Thecc.04G014700' => 'tca', 'Thhalv10006991m.g' => 'esa', 'Thhalv10012707m.g' => 'esa', 'Thhalv10015739m.g' => 'esa', 'Thhalv10024553m.g' => 'esa', 'Thhalv10024673m.g' => 'esa', 'Thhalv10029187m.g' => 'esa', 'TPR.G12971' => 'tpr', 'TPR.G29396' => 'tpr', 'TPR.G33376' => 'tpr', 'TPR.G35508' => 'tpr', 'TPR.G35516' => 'tpr', 'TPR.G37317' => 'tpr', 'TPR.G37389' => 'tpr', 'TPR.G37523' => 'tpr', 'TPR.G559' => 'tpr', 'TWI14G0070' => 'twi', 'TWI14G0729' => 'twi', 'TWI18G0596' => 'twi', 'TWI39G0780' => 'twi', 'TWI39G0850' => 'twi', 'TWI73G1052' => 'twi', 'unitig_52.g17485' => 'ugi', 'unitig_61.g26355' => 'ugi', 'vmacro01040' => 'vma', 'vmacro16731' => 'vma', 'vmacro18270' => 'vma', 'vmacro19142' => 'vma', 'vmacro19407' => 'vma', 'vmacro19408' => 'vma', 'vmacro21899' => 'vma', 'vmacro21900' => 'vma', 'vmacro21901' => 'vma', 'VMungo0251G0490' => 'vmu', 'VMungo0251G1748' => 'vmu', 'VMungo1309G0421' => 'vmu', 'Zm00001eb086500' => 'zma', 'Zm00001eb150680' => 'zma', 'Zm00001eb162330' => 'zma', 'Zm00001eb203130' => 'zma', 'Zm00001eb369480' => 'zma', 'Zm00001eb382340' => 'zma', 'Zm00001eb416360' => 'zma' ) $gf_id = 'HOM05D000902' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000902' ) $data_identifier = 'HOM05D000902' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 13, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 10, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 6, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 9, 'hma' => (int) 12, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 4, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 6, 'ppa' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 6, 'rch' => (int) 9, 'rsi' => (int) 9, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 12, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 3, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416360' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000902', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '663', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02470' => 'bna', 'A01p16260' => 'bna', 'A02p01680' => 'bna', 'A03p16600' => 'bna', 'A03p55660' => 'bna', 'A03p64160' => 'bna', 'A03p64170' => 'bna', 'A08p31900' => 'bna', 'A09p59530' => 'bna', 'A10p08230' => 'bna', 'A10p25090' => 'bna', 'Aa31LG3G7100' => 'aar', 'Aa31LG3G7110' => 'aar', 'Aa31LG6G13160' => 'aar', 'Aa31LG7G10770' => 'aar', 'Aa31LG7G3830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2723' => 'aag', 'Actinidia08045' => 'ach', 'Actinidia08888' => 'ach', 'Actinidia18333' => 'ach', 'Actinidia19334' => 'ach', 'Actinidia25552' => 'ach', 'Actinidia26089' => 'ach', 'Actinidia30615' => 'ach', 'Actinidia30616' => 'ach', 'Actinidia33083' => 'ach', 'Actinidia35762' => 'ach', 'Ah.02g110620' => 'amhyb', 'Ah.11g046390' => 'amhyb', 'AL1G31670' => 'aly', 'AL6G23730' => 'aly', 'AL7G14740' => 'aly', 'AL7G14750' => 'aly', 'AL7G14760' => 'aly', 'AL7G28220' => 'aly', 'AL8G24940' => 'aly', 'Aqoxy3G01665' => 'aox', 'Aqoxy3G02853' => 'aox', 'Aqoxy5G01513' => 'aox', 'Aqoxy5G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8SKA4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ75LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKDA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0LJZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7REX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZP4YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWX7I5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2QKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS0L9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPCD8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q161UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC7XCF' => 'arhy', 'AT1G19100' => 'ath', 'AT4G24970' => 'ath', 'AT4G36270' => 'ath', 'AT4G36280' => 'ath', 'AT4G36290' => 'ath', 'AT5G13130' => 'ath', 'AT5G50780' => 'ath', 'ATR0582G266' => 'atr', 'ATR0661G195' => 'atr', 'ATR1152G031' => 'atr', 'Atru.chr11.2382' => 'acertr', 'Atru.chr12.2337' => 'acertr', 'Atru.chr3.744' => 'acertr', 'Atru.chr6.1870' => 'acertr', 'Atru.chr9.2515' => 'acertr', 'AUR62004120' => 'cqu', 'AUR62005667' => 'cqu', 'AUR62007634' => 'cqu', 'AUR62008186' => 'cqu', 'AUR62008187' => 'cqu', 'AUR62008188' => 'cqu', 'AUR62027954' => 'cqu', 'AUR62028766' => 'cqu', 'AUR62028767' => 'cqu', 'AUR62028768' => 'cqu', 'AUR62028886' => 'cqu', 'AUR62029563' => 'cqu', 'AUR62038832' => 'cqu', 'BcaB01g04149' => 'bca', 'BcaB03g12940' => 'bca', 'BcaB03g13090' => 'bca', 'BcaB03g14466' => 'bca', 'BcaB05g24035' => 'bca', 'BcaC01g06050' => 'bca', 'BcaC04g19148' => 'bca', 'BcaC04g20761' => 'bca', 'BcaC06g32845' => 'bca', 'BcaC07g41274' => 'bca', 'BcaC09g50827' => 'bca', 'BcaNung00741' => 'bca', 'BcaNung00742' => 'bca', 'BcaNung01859' => 'bca', 'BcaNung03985' => 'bca', 'BcaNung03989' => 'bca', 'BcaNung05661' => 'bca', 'BolC1t00257H' => 'bol', 'BolC1t01956H' => 'bol', 'BolC2t06534H' => 'bol', 'BolC3t14334H' => 'bol', 'BolC5t30451H' => 'bol', 'BolC7t45880H' => 'bol', 'BolC7t46586H' => 'bol', 'BolC8t49301H' => 'bol', 'BolC8t51837H' => 'bol', 'BolC9t56822H' => 'bol', 'BolC9t59235H' => 'bol', 'BraA01t00234Z' => 'bra', 'BraA01t01563Z' => 'bra', 'BraA02t05147Z' => 'bra', 'BraA03t10947Z' => 'bra', 'BraA03t14633Z' => 'bra', 'BraA08t35112Z' => 'bra', 'BraA09t41330Z' => 'bra', 'BraA10t44570Z' => 'bra', 'C01p02670' => 'bna', 'C01p20260' => 'bna', 'C02p05890' => 'bna', 'C03p19530' => 'bna', 'C05p17470' => 'bna', 'C07p53900' => 'bna', 'C07p61630' => 'bna', 'C08p16800' => 'bna', 'C08p42810' => 'bna', 'C09p39480' => 'bna', 'C09p63980' => 'bna', 'CAN.G1001.7' => 'can', 'CAN.G1034.55' => 'can', 'CAN.G143.7' => 'can', 'CAN.G3340.1' => 'can', 'CAN.G358.19' => 'can', 'CAN.G373.2' => 'can', 'CAN.G674.16' => 'can', 'CAN.G674.17' => 'can', 'CAN.G674.18' => 'can', 'CAN.G732.2' => 'can', 'CAN.G732.3' => 'can', 'CAN.G993.39' => 'can', 'CANSAT01G2052' => 'cansat', 'CANSAT80G0070' => 'cansat', 'CANSAT80G0483' => 'cansat', 'CANSAT80G0625' => 'cansat', 'CARHR019690' => 'chi', 'CARHR080280' => 'chi', 'CARHR152750' => 'chi', 'CARHR152760' => 'chi', 'CARHR152770' => 'chi', 'CARHR200340' => 'chi', 'CARHR232370' => 'chi', 'CARHR244670' => 'chi', 'CARHR244680' => 'chi', 'CARHR257520' => 'chi', 'Carub.0001s1872' => 'cru', 'Carub.0006s1130' => 'cru', 'Carub.0007s0396' => 'cru', 'Carub.0007s0397' => 'cru', 'Carub.0007s1608' => 'cru', 'Carub.0008s1068' => 'cru', 'Carub.0008s1077' => 'cru', 'Ca_16158_v3' => 'car', 'Ca_17571_v3' => 'car', 'Ca_21936_v3' => 'car', 'Ca_22350_v3' => 'car', 'CBR_g22445' => 'cbr', 'CBR_g26290' => 'cbr', 'Cc04_g09610' => 'ccan', 'Cc04_g12280' => 'ccan', 'Cc07_g10230' => 'ccan', 'CDE02G0093' => 'cde', 'CDE02G0701' => 'cde', 'CDE04G1050' => 'cde', 'CDE05G1833' => 'cde', 'CDE05G3058' => 'cde', 'CDE05G3380' => 'cde', 'CDE06G0536' => 'cde', 'Cfa006923' => 'cfa', 'Cfa009402' => 'cfa', 'Cfa018751' => 'cfa', 'Cfa019164' => 'cfa', 'Cfa022935' => 'cfa', 'Ciclev10019081m.g' => 'ccl', 'Ciclev10025076m.g' => 'ccl', 'Ciclev10030712m.g' => 'ccl', 'Ciclev10033760m.g' => 'ccl', 'CiPaw.05G105600' => 'cil', 'CiPaw.08G136700' => 'cil', 'CiPaw.11G003900' => 'cil', 'CiPaw.11G023700' => 'cil', 'CiPaw.12G003700' => 'cil', 'ClCG06G017100' => 'cla', 'ClCG06G018110' => 'cla', 'ClCG07G008800' => 'cla', 'ClCG07G015330' => 'cla', 'COL.COLO4_13698' => 'col', 'COL.COLO4_16659' => 'col', 'COL.COLO4_21986' => 'col', 'COL.COLO4_24049' => 'col', 'COL.COLO4_29061' => 'col', 'COL.COLO4_29075' => 'col', 'COL.COLO4_30094' => 'col', 'Cpa.g.c33689' => 'cpa', 'Cpa.g.sc108.39' => 'cpa', 'Cpa.g.sc108.41' => 'cpa', 'Cpa.g.sc1163.1' => 'cpa', 'Cpa.g.sc4.155' => 'cpa', 'Cpa.g.sc6.194' => 'cpa', 'CsaV3_1G000340' => 'csa', 'CsaV3_1G001400' => 'csa', 'CsaV3_4G002220' => 'csa', 'CsaV3_4G005370' => 'csa', 'CSS0007487' => 'camsi', 'CSS0008066' => 'camsi', 'CSS0009120' => 'camsi', 'CSS0015512' => 'camsi', 'CSS0022409' => 'camsi', 'CSS0025358' => 'camsi', 'CSS0044547' => 'camsi', 'DCAR_013057' => 'dca', 'DCAR_015058' => 'dca', 'DCAR_016027' => 'dca', 'DCAR_017327' => 'dca', 'DCAR_020743' => 'dca', 'DCAR_026157' => 'dca', 'DCAR_032339' => 'dca', 'DCAR_032340' => 'dca', 'Dinv11200' => 'din', 'Dinv11201' => 'din', 'Dinv20631' => 'din', 'Dinv23182' => 'din', 'Dinv33466' => 'din', 'Dinv33583' => 'din', 'Dinv38565' => 'din', 'Duzib068G0200' => 'dzi', 'Duzib147G0132' => 'dzi', 'Duzib147G0635' => 'dzi', 'Duzib205G1670' => 'dzi', 'Duzib251G0606' => 'dzi', 'ECA232G3336' => 'eca', 'ECA232G3763' => 'eca', 'ECA232G4845' => 'eca', 'ECA234G1607' => 'eca', 'ECA246G0932' => 'eca', 'ECA247G0781' => 'eca', 'ECA247G1932' => 'eca', 'ECA247G2079' => 'eca', 'ECA247G3338' => 'eca', 'ECA247G4115' => 'eca', 'EL10Ac3g06552' => 'bvu', 'EL10Ac5g10721' => 'bvu', 'EL10Ac5g10722' => 'bvu', 'EL10Ac5g10723' => 'bvu', 'EL10Ac5g11361' => 'bvu', 'EL10Ac6g13553' => 'bvu', 'EL10As8g23872' => 'bvu', 'Eucgr.B00250' => 'egr', 'Eucgr.B00251' => 'egr', 'Eucgr.B03533' => 'egr', 'Eucgr.I02381' => 'egr', 'Eucgr.K02700' => 'egr', 'FAN02G0174' => 'fan', 'FAN02G3146' => 'fan', 'FAN04G1672' => 'fan', 'FAN04G2273' => 'fan', 'FAN05G2791' => 'fan', 'FAN05G4035' => 'fan', 'FAN07G0834' => 'fan', 'FAN08G1198' => 'fan', 'FAN09G4182' => 'fan', 'FAN12G0496' => 'fan', 'FAN13G1027' => 'fan', 'FAN13G2951' => 'fan', 'FAN14G0705' => 'fan', 'FAN14G0720' => 'fan', 'FAN17G0201' => 'fan', 'FAN17G2665' => 'fan', 'FAN18G1456' => 'fan', 'FAN18G1525' => 'fan', 'FAN18G3500' => 'fan', 'FAN28G2670' => 'fan', 'FvH4_1g12391' => 'fve', 'FvH4_4g23220' => 'fve', 'FvH4_5g08810' => 'fve', 'FvH4_5g28960' => 'fve', 'FvH4_6g42820' => 'fve', 'FvH4_6g51110' => 'fve', 'Glyma.02G051802' => 'gma', 'Glyma.04G185300' => 'gma', 'Glyma.05G202900' => 'gma', 'Glyma.08G010300' => 'gma', 'Glyma.16G131900' => 'gma', 'Glyma.17G087900' => 'gma', 'Gohir.A07G048600' => 'ghi', 'Gohir.A11G179000' => 'ghi', 'Gohir.A12G140900' => 'ghi', 'Gohir.A12G140950' => 'ghi', 'Gohir.A12G191700' => 'ghi', 'Gohir.A13G086300' => 'ghi', 'Gohir.D07G052900' => 'ghi', 'Gohir.D11G186600' => 'ghi', 'Gohir.D12G145575' => 'ghi', 'Gohir.D12G145650' => 'ghi', 'Gohir.D12G145725' => 'ghi', 'Gohir.D12G194050' => 'ghi', 'Gohir.D13G091800' => 'ghi', 'Gorai.001G055900' => 'gra', 'Gorai.007G198400' => 'gra', 'Gorai.008G157000' => 'gra', 'Gorai.008G157100' => 'gra', 'Gorai.008G208700' => 'gra', 'Gorai.010G138700' => 'gra', 'GSVIVG01000977001' => 'vvi', 'GSVIVG01007708001' => 'vvi', 'GSVIVG01008587001' => 'vvi', 'GSVIVG01018849001' => 'vvi', 'GSVIVG01032432001' => 'vvi', 'HanXRQChr02g0034131' => 'han', 'HanXRQChr02g0035981' => 'han', 'HanXRQChr02g0035991' => 'han', 'HanXRQChr05g0155611' => 'han', 'HanXRQChr05g0155621' => 'han', 'HanXRQChr08g0236501' => 'han', 'HanXRQChr09g0261321' => 'han', 'HanXRQChr09g0272081' => 'han', 'HanXRQChr10g0310741' => 'han', 'HanXRQChr11g0325591' => 'han', 'HanXRQChr12g0385691' => 'han', 'HanXRQChr13g0387801' => 'han', 'HanXRQChr15g0463011' => 'han', 'Haze_03826' => 'cav', 'Haze_03827' => 'cav', 'Haze_07183' => 'cav', 'Haze_07537' => 'cav', 'Haze_07539' => 'cav', 'Haze_12461' => 'cav', 'Haze_16115' => 'cav', 'Haze_16808' => 'cav', 'Haze_18531' => 'cav', 'Hma1.2p1_0046F.1_g026700' => 'hma', 'Hma1.2p1_0046F.1_g026710' => 'hma', 'Hma1.2p1_0168F.1_g074340' => 'hma', 'Hma1.2p1_0266F.1_g107030' => 'hma', 'Hma1.2p1_0266F.1_g107060' => 'hma', 'Hma1.2p1_0275F.1_g110510' => 'hma', 'Hma1.2p1_0592F.1_g185490' => 'hma', 'Hma1.2p1_0592F.1_g185500' => 'hma', 'Hma1.2p1_0592F.1_g185510' => 'hma', 'Hma1.2p1_0592F.1_g185520' => 'hma', 'Hma1.2p1_0592F.1_g185530' => 'hma', 'Hma1.2p1_0818F.1_g223450' => 'hma', 'HPP92_009708' => 'vpl', 'HPP92_009793' => 'vpl', 'HPP92_009796' => 'vpl', 'HPP92_009797' => 'vpl', 'HPP92_014940' => 'vpl', 'HPP92_014988' => 'vpl', 'Hund02463' => 'sun', 'Hund02760' => 'sun', 'Hund05071' => 'sun', 'Hund10108' => 'sun', 'Hund11204' => 'sun', 'Hund14016' => 'sun', 'Hund16464' => 'sun', 'Lalb_Chr09g0333391' => 'lal', 'Lalb_Chr11g0070461' => 'lal', 'Lalb_Chr12g0201671' => 'lal', 'Lalb_Chr13g0297161' => 'lal', 'Lj1g0002823' => 'lja', 'Lj3C1074T6' => 'lonja', 'Lj4A212T28' => 'lonja', 'Lj4g0005516' => 'lja', 'Lj4g0013705' => 'lja', 'Lj4g0027865' => 'lja', 'Lj5C92G16' => 'lonja', 'Lj5C92T12' => 'lonja', 'Lj7C596T3' => 'lonja', 'Lj9A446G59' => 'lonja', 'Lj9A482G21' => 'lonja', 'Lsat_1_v5_gn_1_28261' => 'lsa', 'Lsat_1_v5_gn_1_28281' => 'lsa', 'Lsat_1_v5_gn_1_32721' => 'lsa', 'Lsat_1_v5_gn_4_151760' => 'lsa', 'Lsat_1_v5_gn_4_2120' => 'lsa', 'Lsat_1_v5_gn_4_75761' => 'lsa', 'Lsat_1_v5_gn_5_10920' => 'lsa', 'Manes.02G099900' => 'mes', 'Manes.11G096200' => 'mes', 'Manes.12G007200' => 'mes', 'Manes.14G048300' => 'mes', 'Manes.17G114700' => 'mes', 'Mapoly0002s0070' => 'mpo', 'Mapoly0029s0099' => 'mpo', 'MBI07_g24742_MAGBIO' => 'mbi', 'MBI10_g27988_MAGBIO' => 'mbi', 'MBI11_g13057_MAGBIO' => 'mbi', 'MD02G1137200' => 'mdo', 'MD06G1137200' => 'mdo', 'MD07G1122300' => 'mdo', 'MD09G1078200' => 'mdo', 'MD13G1123700' => 'mdo', 'MD14G1151900' => 'mdo', 'MD17G1030900' => 'mdo', 'MD17G1068200' => 'mdo', 'MD17G1068600' => 'mdo', 'Medtr3g077540' => 'mtr', 'Medtr4g105530' => 'mtr', 'Medtr8g076580' => 'mtr', 'Medtr8g076590' => 'mtr', 'Medtr8g096410' => 'mtr', 'MELO3C016411.2' => 'cme', 'MELO3C017780.2' => 'cme', 'MELO3C022560.2' => 'cme', 'MELO3C026187.2' => 'cme', 'MELO3C026286.2' => 'cme', 'MELO3C032854.2' => 'cme', 'Migut.H02495' => 'egut', 'Migut.I00561' => 'egut', 'Migut.K01015' => 'egut', 'Migut.K01016' => 'egut', 'Migut.L00743' => 'egut', 'Migut.L00744' => 'egut', 'Migut.L00746' => 'egut', 'Migut.L00798' => 'egut', 'Migut.L00799' => 'egut', 'Migut.N02096' => 'egut', 'MSTRG.11259' => 'ama', 'MSTRG.23142' => 'ama', 'MSTRG.2499' => 'ama', 'Nitab4.5_0000003g0730' => 'nta', 'Nitab4.5_0000137g0020' => 'nta', 'Nitab4.5_0000721g0210' => 'nta', 'Nitab4.5_0000723g0050' => 'nta', 'Nitab4.5_0000913g0070' => 'nta', 'Nitab4.5_0001332g0040' => 'nta', 'Nitab4.5_0001771g0050' => 'nta', 'Nitab4.5_0001918g0050' => 'nta', 'Nitab4.5_0002686g0030' => 'nta', 'Nitab4.5_0003156g0020' => 'nta', 'Nitab4.5_0003383g0040' => 'nta', 'Nitab4.5_0003918g0010' => 'nta', 'Nitab4.5_0006760g0010' => 'nta', 'Nn1g05981' => 'nnu', 'Nn1g06288' => 'nnu', 'Nn3g16371' => 'nnu', 'Nn3g16786' => 'nnu', 'Nn4g22232' => 'nnu', 'Oeu005144.1' => 'oeu', 'Oeu005145.1' => 'oeu', 'Oeu011348.1' => 'oeu', 'Oeu016415.1' => 'oeu', 'Oeu023501.1' => 'oeu', 'Oeu044473.1' => 'oeu', 'Oeu048892.2' => 'oeu', 'Os01g0549200' => 'osa', 'Os02g0469300' => 'osa', 'Os04g0311100' => 'osa', 'Os06g0474900' => 'osa', 'Os10g0181700' => 'osa', 'Os11g0454800' => 'osa', 'Peaxi162Scf00037g00714' => 'pax', 'Peaxi162Scf00084g01217' => 'pax', 'Peaxi162Scf00257g00217' => 'pax', 'Peaxi162Scf00516g00215' => 'pax', 'Peaxi162Scf00689g00123' => 'pax', 'PGR044G2719' => 'pgr', 'PGR083G1360' => 'pgr', 'PGR102G2849' => 'pgr', 'PGR119G2534' => 'pgr', 'PGSC0003DMG400003538' => 'stu', 'PGSC0003DMG400028138' => 'stu', 'PGSC0003DMG400031732' => 'stu', 'PGSC0003DMG400038165' => 'stu', 'Phvul.002G284600' => 'pvu', 'Phvul.003G258200' => 'pvu', 'Phvul.009G176500' => 'pvu', 'Potri.003G167201' => 'ptr', 'Potri.005G118400' => 'ptr', 'Potri.012G089000' => 'ptr', 'Potri.012G102800' => 'ptr', 'Potri.015G079400' => 'ptr', 'Potri.015G100900' => 'ptr', 'Pp3c14_9810' => 'ppa', 'Pp3c15_10450' => 'ppa', 'Pp3c20_19150' => 'ppa', 'Pp3c23_12740' => 'ppa', 'Pp3c23_6310' => 'ppa', 'Pp3c24_3720' => 'ppa', 'Pp3c27_2580' => 'ppa', 'Pp3c9_8990' => 'ppa', 'PRCOL_00002854' => 'pco', 'Prupe.1G221200' => 'ppe', 'Prupe.3G289000' => 'ppe', 'Prupe.5G147000' => 'ppe', 'Prupe.6G157300' => 'ppe', 'Prupe.7G163400' => 'ppe', 'Psat0s2177g0040' => 'psa', 'Psat3g174760' => 'psa', 'Psat3g192160' => 'psa', 'Psat4g058520' => 'psa', 'Psat4g096840' => 'psa', 'Psat7g037320' => 'psa', 'PSO017G1274' => 'pso', 'PSO017G5166' => 'pso', 'PSO063G4558' => 'pso', 'PSO170G4458' => 'pso', 'PSO170G5005' => 'pso', 'PSO210G6156' => 'pso', 'PSO210G6635' => 'pso', 'PSO210G7397' => 'pso', 'PSO210G7700' => 'pso', 'PSO455G0035' => 'pso', 'PSO455G0180' => 'pso', 'PSO478G4515' => 'pso', 'PSO832G1305' => 'pso', 'PSO832G3489' => 'pso', 'QL02p075247' => 'qlo', 'QL03p051148' => 'qlo', 'QL05p010313' => 'qlo', 'QL06p034627' => 'qlo', 'QL10p001889' => 'qlo', 'QL10p010846' => 'qlo', 'RcHm_v2.0_Chr1g0350621' => 'rch', 'RcHm_v2.0_Chr1g0350641' => 'rch', 'RcHm_v2.0_Chr2g0092891' => 'rch', 'RcHm_v2.0_Chr2g0100251' => 'rch', 'RcHm_v2.0_Chr2g0158661' => 'rch', 'RcHm_v2.0_Chr2g0172741' => 'rch', 'RcHm_v2.0_Chr4g0429571' => 'rch', 'RcHm_v2.0_Chr5g0042471' => 'rch', 'RcHm_v2.0_Chr7g0189451' => 'rch', 'Rhsim08G0052000' => 'rsi', 'Rhsim08G0174400' => 'rsi', 'Rhsim08G0193200' => 'rsi', 'Rhsim10G0214800' => 'rsi', 'Rhsim10G0214900' => 'rsi', 'Rhsim10G0215000' => 'rsi', 'Rhsim12G0022900' => 'rsi', 'Rhsim12G0177500' => 'rsi', 'Rhsim12G0177700' => 'rsi', 'Sabra03G0122600' => 'sbr', 'Sabra05G0097400' => 'sbr', 'Sabra12G0064100' => 'sbr', 'Sabra15G0121300' => 'sbr', 'SalBow2G0642' => 'sbo', 'SalBow5G2667' => 'sbo', 'SalBow5G4873' => 'sbo', 'SalBow8G2395' => 'sbo', 'Sc03g0003290' => 'sci', 'Sc10g0010130' => 'sci', 'Sc22g0003650' => 'sci', 'Sed0001603' => 'sed', 'Sed0004259' => 'sed', 'Sed0006789' => 'sed', 'Sed0011838' => 'sed', 'Sed0012964' => 'sed', 'Sed0016383' => 'sed', 'Sed0019010' => 'sed', 'Sed0020188' => 'sed', 'SEGI_04702' => 'sgi', 'SEGI_17231' => 'sgi', 'SEGI_18877' => 'sgi', 'SEGI_25196' => 'sgi', 'SEGI_25515' => 'sgi', 'SEGI_28445' => 'sgi', 'SEGI_37452' => 'sgi', 'SGA_v2.0_scaffold188G40336' => 'sas', 'SGA_v2.0_scaffold228G43247' => 'sas', 'SGA_v2.0_scaffold280G46853' => 'sas', 'SGA_v2.0_scaffold34G13808' => 'sas', 'SGA_v2.0_scaffold40G15576' => 'sas', 'SGA_v2.0_scaffold611G53188' => 'sas', 'SGA_v2.0_scaffold78G25461' => 'sas', 'SGA_v2.0_scaffold90G27888' => 'sas', 'SHI08601' => 'shi', 'SHI08606' => 'shi', 'SHI17117' => 'shi', 'SHI17119' => 'shi', 'SMO118G0201' => 'smo', 'SMO169G0247' => 'smo', 'SMO176G0006' => 'smo', 'SMO176G0015' => 'smo', 'SMO202G0006' => 'smo', 'SMO240G0050' => 'smo', 'SMO286G0009' => 'smo', 'SMO338G0033' => 'smo', 'SMO356G0533' => 'smo', 'SMO364G0382' => 'smo', 'SMO367G0166' => 'smo', 'SMO367G1098' => 'smo', 'Solyc01g009920.3' => 'sly', 'Solyc01g099300.3' => 'sly', 'Solyc02g084700.3' => 'sly', 'Solyc03g097520.3' => 'sly', 'Solyc06g071580.3' => 'sly', 'Solyc10g081760.3' => 'sly', 'Sopen01g005480' => 'spe', 'Sopen01g042850' => 'spe', 'Sopen02g029370' => 'spe', 'Sopen03g028280' => 'spe', 'Sopen06g027870' => 'spe', 'Sopen10g032270' => 'spe', 'Sp5g18180' => 'spa', 'Sp6g12880' => 'spa', 'Sp6g30850' => 'spa', 'Sp7g22960' => 'spa', 'Sp7g34010' => 'spa', 'SpUn1326_0010' => 'spa', 'TAR371G0242' => 'tar', 'TAR622G0638' => 'tar', 'TAR628G1548' => 'tar', 'TAR629G1079' => 'tar', 'TAR629G3413' => 'tar', 'THA.LOC104804249' => 'tha', 'THA.LOC104808315' => 'tha', 'THA.LOC104809238' => 'tha', 'THA.LOC104825484' => 'tha', 'Thecc.01G025500' => 'tca', 'Thecc.03G015800' => 'tca', 'Thecc.03G018000' => 'tca', 'Thecc.03G134800' => 'tca', 'Thecc.04G014700' => 'tca', 'Thhalv10006991m.g' => 'esa', 'Thhalv10012707m.g' => 'esa', 'Thhalv10015739m.g' => 'esa', 'Thhalv10024553m.g' => 'esa', 'Thhalv10024673m.g' => 'esa', 'Thhalv10029187m.g' => 'esa', 'TPR.G12971' => 'tpr', 'TPR.G29396' => 'tpr', 'TPR.G33376' => 'tpr', 'TPR.G35508' => 'tpr', 'TPR.G35516' => 'tpr', 'TPR.G37317' => 'tpr', 'TPR.G37389' => 'tpr', 'TPR.G37523' => 'tpr', 'TPR.G559' => 'tpr', 'TWI14G0070' => 'twi', 'TWI14G0729' => 'twi', 'TWI18G0596' => 'twi', 'TWI39G0780' => 'twi', 'TWI39G0850' => 'twi', 'TWI73G1052' => 'twi', 'unitig_52.g17485' => 'ugi', 'unitig_61.g26355' => 'ugi', 'vmacro01040' => 'vma', 'vmacro16731' => 'vma', 'vmacro18270' => 'vma', 'vmacro19142' => 'vma', 'vmacro19407' => 'vma', 'vmacro19408' => 'vma', 'vmacro21899' => 'vma', 'vmacro21900' => 'vma', 'vmacro21901' => 'vma', 'VMungo0251G0490' => 'vmu', 'VMungo0251G1748' => 'vmu', 'VMungo1309G0421' => 'vmu', 'Zm00001eb086500' => 'zma', 'Zm00001eb150680' => 'zma', 'Zm00001eb162330' => 'zma', 'Zm00001eb203130' => 'zma', 'Zm00001eb369480' => 'zma', 'Zm00001eb382340' => 'zma', 'Zm00001eb416360' => 'zma' ), 'gf_id' => 'HOM05D000902', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000902' ), 'data_identifier' => 'HOM05D000902', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000902', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '663', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02470' => 'bna', 'A01p16260' => 'bna', 'A02p01680' => 'bna', 'A03p16600' => 'bna', 'A03p55660' => 'bna', 'A03p64160' => 'bna', 'A03p64170' => 'bna', 'A08p31900' => 'bna', 'A09p59530' => 'bna', 'A10p08230' => 'bna', 'A10p25090' => 'bna', 'Aa31LG3G7100' => 'aar', 'Aa31LG3G7110' => 'aar', 'Aa31LG6G13160' => 'aar', 'Aa31LG7G10770' => 'aar', 'Aa31LG7G3830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2723' => 'aag', 'Actinidia08045' => 'ach', 'Actinidia08888' => 'ach', 'Actinidia18333' => 'ach', 'Actinidia19334' => 'ach', 'Actinidia25552' => 'ach', 'Actinidia26089' => 'ach', 'Actinidia30615' => 'ach', 'Actinidia30616' => 'ach', 'Actinidia33083' => 'ach', 'Actinidia35762' => 'ach', 'Ah.02g110620' => 'amhyb', 'Ah.11g046390' => 'amhyb', 'AL1G31670' => 'aly', 'AL6G23730' => 'aly', 'AL7G14740' => 'aly', 'AL7G14750' => 'aly', 'AL7G14760' => 'aly', 'AL7G28220' => 'aly', 'AL8G24940' => 'aly', 'Aqoxy3G01665' => 'aox', 'Aqoxy3G02853' => 'aox', 'Aqoxy5G01513' => 'aox', 'Aqoxy5G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8SKA4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ75LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKDA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0LJZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7REX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZP4YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWX7I5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2QKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS0L9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPCD8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q161UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC7XCF' => 'arhy', 'AT1G19100' => 'ath', 'AT4G24970' => 'ath', 'AT4G36270' => 'ath', 'AT4G36280' => 'ath', 'AT4G36290' => 'ath', 'AT5G13130' => 'ath', 'AT5G50780' => 'ath', 'ATR0582G266' => 'atr', 'ATR0661G195' => 'atr', 'ATR1152G031' => 'atr', 'Atru.chr11.2382' => 'acertr', 'Atru.chr12.2337' => 'acertr', 'Atru.chr3.744' => 'acertr', 'Atru.chr6.1870' => 'acertr', 'Atru.chr9.2515' => 'acertr', 'AUR62004120' => 'cqu', 'AUR62005667' => 'cqu', 'AUR62007634' => 'cqu', 'AUR62008186' => 'cqu', 'AUR62008187' => 'cqu', 'AUR62008188' => 'cqu', 'AUR62027954' => 'cqu', 'AUR62028766' => 'cqu', 'AUR62028767' => 'cqu', 'AUR62028768' => 'cqu', 'AUR62028886' => 'cqu', 'AUR62029563' => 'cqu', 'AUR62038832' => 'cqu', 'BcaB01g04149' => 'bca', 'BcaB03g12940' => 'bca', 'BcaB03g13090' => 'bca', 'BcaB03g14466' => 'bca', 'BcaB05g24035' => 'bca', 'BcaC01g06050' => 'bca', 'BcaC04g19148' => 'bca', 'BcaC04g20761' => 'bca', 'BcaC06g32845' => 'bca', 'BcaC07g41274' => 'bca', 'BcaC09g50827' => 'bca', 'BcaNung00741' => 'bca', 'BcaNung00742' => 'bca', 'BcaNung01859' => 'bca', 'BcaNung03985' => 'bca', 'BcaNung03989' => 'bca', 'BcaNung05661' => 'bca', 'BolC1t00257H' => 'bol', 'BolC1t01956H' => 'bol', 'BolC2t06534H' => 'bol', 'BolC3t14334H' => 'bol', 'BolC5t30451H' => 'bol', 'BolC7t45880H' => 'bol', 'BolC7t46586H' => 'bol', 'BolC8t49301H' => 'bol', 'BolC8t51837H' => 'bol', 'BolC9t56822H' => 'bol', 'BolC9t59235H' => 'bol', 'BraA01t00234Z' => 'bra', 'BraA01t01563Z' => 'bra', 'BraA02t05147Z' => 'bra', 'BraA03t10947Z' => 'bra', 'BraA03t14633Z' => 'bra', 'BraA08t35112Z' => 'bra', 'BraA09t41330Z' => 'bra', 'BraA10t44570Z' => 'bra', 'C01p02670' => 'bna', 'C01p20260' => 'bna', 'C02p05890' => 'bna', 'C03p19530' => 'bna', 'C05p17470' => 'bna', 'C07p53900' => 'bna', 'C07p61630' => 'bna', 'C08p16800' => 'bna', 'C08p42810' => 'bna', 'C09p39480' => 'bna', 'C09p63980' => 'bna', 'CAN.G1001.7' => 'can', 'CAN.G1034.55' => 'can', 'CAN.G143.7' => 'can', 'CAN.G3340.1' => 'can', 'CAN.G358.19' => 'can', 'CAN.G373.2' => 'can', 'CAN.G674.16' => 'can', 'CAN.G674.17' => 'can', 'CAN.G674.18' => 'can', 'CAN.G732.2' => 'can', 'CAN.G732.3' => 'can', 'CAN.G993.39' => 'can', 'CANSAT01G2052' => 'cansat', 'CANSAT80G0070' => 'cansat', 'CANSAT80G0483' => 'cansat', 'CANSAT80G0625' => 'cansat', 'CARHR019690' => 'chi', 'CARHR080280' => 'chi', 'CARHR152750' => 'chi', 'CARHR152760' => 'chi', 'CARHR152770' => 'chi', 'CARHR200340' => 'chi', 'CARHR232370' => 'chi', 'CARHR244670' => 'chi', 'CARHR244680' => 'chi', 'CARHR257520' => 'chi', 'Carub.0001s1872' => 'cru', 'Carub.0006s1130' => 'cru', 'Carub.0007s0396' => 'cru', 'Carub.0007s0397' => 'cru', 'Carub.0007s1608' => 'cru', 'Carub.0008s1068' => 'cru', 'Carub.0008s1077' => 'cru', 'Ca_16158_v3' => 'car', 'Ca_17571_v3' => 'car', 'Ca_21936_v3' => 'car', 'Ca_22350_v3' => 'car', 'CBR_g22445' => 'cbr', 'CBR_g26290' => 'cbr', 'Cc04_g09610' => 'ccan', 'Cc04_g12280' => 'ccan', 'Cc07_g10230' => 'ccan', 'CDE02G0093' => 'cde', 'CDE02G0701' => 'cde', 'CDE04G1050' => 'cde', 'CDE05G1833' => 'cde', 'CDE05G3058' => 'cde', 'CDE05G3380' => 'cde', 'CDE06G0536' => 'cde', 'Cfa006923' => 'cfa', 'Cfa009402' => 'cfa', 'Cfa018751' => 'cfa', 'Cfa019164' => 'cfa', 'Cfa022935' => 'cfa', 'Ciclev10019081m.g' => 'ccl', 'Ciclev10025076m.g' => 'ccl', 'Ciclev10030712m.g' => 'ccl', 'Ciclev10033760m.g' => 'ccl', 'CiPaw.05G105600' => 'cil', 'CiPaw.08G136700' => 'cil', 'CiPaw.11G003900' => 'cil', 'CiPaw.11G023700' => 'cil', 'CiPaw.12G003700' => 'cil', 'ClCG06G017100' => 'cla', 'ClCG06G018110' => 'cla', 'ClCG07G008800' => 'cla', 'ClCG07G015330' => 'cla', 'COL.COLO4_13698' => 'col', 'COL.COLO4_16659' => 'col', 'COL.COLO4_21986' => 'col', 'COL.COLO4_24049' => 'col', 'COL.COLO4_29061' => 'col', 'COL.COLO4_29075' => 'col', 'COL.COLO4_30094' => 'col', 'Cpa.g.c33689' => 'cpa', 'Cpa.g.sc108.39' => 'cpa', 'Cpa.g.sc108.41' => 'cpa', 'Cpa.g.sc1163.1' => 'cpa', 'Cpa.g.sc4.155' => 'cpa', 'Cpa.g.sc6.194' => 'cpa', 'CsaV3_1G000340' => 'csa', 'CsaV3_1G001400' => 'csa', 'CsaV3_4G002220' => 'csa', 'CsaV3_4G005370' => 'csa', 'CSS0007487' => 'camsi', 'CSS0008066' => 'camsi', 'CSS0009120' => 'camsi', 'CSS0015512' => 'camsi', 'CSS0022409' => 'camsi', 'CSS0025358' => 'camsi', 'CSS0044547' => 'camsi', 'DCAR_013057' => 'dca', 'DCAR_015058' => 'dca', 'DCAR_016027' => 'dca', 'DCAR_017327' => 'dca', 'DCAR_020743' => 'dca', 'DCAR_026157' => 'dca', 'DCAR_032339' => 'dca', 'DCAR_032340' => 'dca', 'Dinv11200' => 'din', 'Dinv11201' => 'din', 'Dinv20631' => 'din', 'Dinv23182' => 'din', 'Dinv33466' => 'din', 'Dinv33583' => 'din', 'Dinv38565' => 'din', 'Duzib068G0200' => 'dzi', 'Duzib147G0132' => 'dzi', 'Duzib147G0635' => 'dzi', 'Duzib205G1670' => 'dzi', 'Duzib251G0606' => 'dzi', 'ECA232G3336' => 'eca', 'ECA232G3763' => 'eca', 'ECA232G4845' => 'eca', 'ECA234G1607' => 'eca', 'ECA246G0932' => 'eca', 'ECA247G0781' => 'eca', 'ECA247G1932' => 'eca', 'ECA247G2079' => 'eca', 'ECA247G3338' => 'eca', 'ECA247G4115' => 'eca', 'EL10Ac3g06552' => 'bvu', 'EL10Ac5g10721' => 'bvu', 'EL10Ac5g10722' => 'bvu', 'EL10Ac5g10723' => 'bvu', 'EL10Ac5g11361' => 'bvu', 'EL10Ac6g13553' => 'bvu', 'EL10As8g23872' => 'bvu', 'Eucgr.B00250' => 'egr', 'Eucgr.B00251' => 'egr', 'Eucgr.B03533' => 'egr', 'Eucgr.I02381' => 'egr', 'Eucgr.K02700' => 'egr', 'FAN02G0174' => 'fan', 'FAN02G3146' => 'fan', 'FAN04G1672' => 'fan', 'FAN04G2273' => 'fan', 'FAN05G2791' => 'fan', 'FAN05G4035' => 'fan', 'FAN07G0834' => 'fan', 'FAN08G1198' => 'fan', 'FAN09G4182' => 'fan', 'FAN12G0496' => 'fan', 'FAN13G1027' => 'fan', 'FAN13G2951' => 'fan', 'FAN14G0705' => 'fan', 'FAN14G0720' => 'fan', 'FAN17G0201' => 'fan', 'FAN17G2665' => 'fan', 'FAN18G1456' => 'fan', 'FAN18G1525' => 'fan', 'FAN18G3500' => 'fan', 'FAN28G2670' => 'fan', 'FvH4_1g12391' => 'fve', 'FvH4_4g23220' => 'fve', 'FvH4_5g08810' => 'fve', 'FvH4_5g28960' => 'fve', 'FvH4_6g42820' => 'fve', 'FvH4_6g51110' => 'fve', 'Glyma.02G051802' => 'gma', 'Glyma.04G185300' => 'gma', 'Glyma.05G202900' => 'gma', 'Glyma.08G010300' => 'gma', 'Glyma.16G131900' => 'gma', 'Glyma.17G087900' => 'gma', 'Gohir.A07G048600' => 'ghi', 'Gohir.A11G179000' => 'ghi', 'Gohir.A12G140900' => 'ghi', 'Gohir.A12G140950' => 'ghi', 'Gohir.A12G191700' => 'ghi', 'Gohir.A13G086300' => 'ghi', 'Gohir.D07G052900' => 'ghi', 'Gohir.D11G186600' => 'ghi', 'Gohir.D12G145575' => 'ghi', 'Gohir.D12G145650' => 'ghi', 'Gohir.D12G145725' => 'ghi', 'Gohir.D12G194050' => 'ghi', 'Gohir.D13G091800' => 'ghi', 'Gorai.001G055900' => 'gra', 'Gorai.007G198400' => 'gra', 'Gorai.008G157000' => 'gra', 'Gorai.008G157100' => 'gra', 'Gorai.008G208700' => 'gra', 'Gorai.010G138700' => 'gra', 'GSVIVG01000977001' => 'vvi', 'GSVIVG01007708001' => 'vvi', 'GSVIVG01008587001' => 'vvi', 'GSVIVG01018849001' => 'vvi', 'GSVIVG01032432001' => 'vvi', 'HanXRQChr02g0034131' => 'han', 'HanXRQChr02g0035981' => 'han', 'HanXRQChr02g0035991' => 'han', 'HanXRQChr05g0155611' => 'han', 'HanXRQChr05g0155621' => 'han', 'HanXRQChr08g0236501' => 'han', 'HanXRQChr09g0261321' => 'han', 'HanXRQChr09g0272081' => 'han', 'HanXRQChr10g0310741' => 'han', 'HanXRQChr11g0325591' => 'han', 'HanXRQChr12g0385691' => 'han', 'HanXRQChr13g0387801' => 'han', 'HanXRQChr15g0463011' => 'han', 'Haze_03826' => 'cav', 'Haze_03827' => 'cav', 'Haze_07183' => 'cav', 'Haze_07537' => 'cav', 'Haze_07539' => 'cav', 'Haze_12461' => 'cav', 'Haze_16115' => 'cav', 'Haze_16808' => 'cav', 'Haze_18531' => 'cav', 'Hma1.2p1_0046F.1_g026700' => 'hma', 'Hma1.2p1_0046F.1_g026710' => 'hma', 'Hma1.2p1_0168F.1_g074340' => 'hma', 'Hma1.2p1_0266F.1_g107030' => 'hma', 'Hma1.2p1_0266F.1_g107060' => 'hma', 'Hma1.2p1_0275F.1_g110510' => 'hma', 'Hma1.2p1_0592F.1_g185490' => 'hma', 'Hma1.2p1_0592F.1_g185500' => 'hma', 'Hma1.2p1_0592F.1_g185510' => 'hma', 'Hma1.2p1_0592F.1_g185520' => 'hma', 'Hma1.2p1_0592F.1_g185530' => 'hma', 'Hma1.2p1_0818F.1_g223450' => 'hma', 'HPP92_009708' => 'vpl', 'HPP92_009793' => 'vpl', 'HPP92_009796' => 'vpl', 'HPP92_009797' => 'vpl', 'HPP92_014940' => 'vpl', 'HPP92_014988' => 'vpl', 'Hund02463' => 'sun', 'Hund02760' => 'sun', 'Hund05071' => 'sun', 'Hund10108' => 'sun', 'Hund11204' => 'sun', 'Hund14016' => 'sun', 'Hund16464' => 'sun', 'Lalb_Chr09g0333391' => 'lal', 'Lalb_Chr11g0070461' => 'lal', 'Lalb_Chr12g0201671' => 'lal', 'Lalb_Chr13g0297161' => 'lal', 'Lj1g0002823' => 'lja', 'Lj3C1074T6' => 'lonja', 'Lj4A212T28' => 'lonja', 'Lj4g0005516' => 'lja', 'Lj4g0013705' => 'lja', 'Lj4g0027865' => 'lja', 'Lj5C92G16' => 'lonja', 'Lj5C92T12' => 'lonja', 'Lj7C596T3' => 'lonja', 'Lj9A446G59' => 'lonja', 'Lj9A482G21' => 'lonja', 'Lsat_1_v5_gn_1_28261' => 'lsa', 'Lsat_1_v5_gn_1_28281' => 'lsa', 'Lsat_1_v5_gn_1_32721' => 'lsa', 'Lsat_1_v5_gn_4_151760' => 'lsa', 'Lsat_1_v5_gn_4_2120' => 'lsa', 'Lsat_1_v5_gn_4_75761' => 'lsa', 'Lsat_1_v5_gn_5_10920' => 'lsa', 'Manes.02G099900' => 'mes', 'Manes.11G096200' => 'mes', 'Manes.12G007200' => 'mes', 'Manes.14G048300' => 'mes', 'Manes.17G114700' => 'mes', 'Mapoly0002s0070' => 'mpo', 'Mapoly0029s0099' => 'mpo', 'MBI07_g24742_MAGBIO' => 'mbi', 'MBI10_g27988_MAGBIO' => 'mbi', 'MBI11_g13057_MAGBIO' => 'mbi', 'MD02G1137200' => 'mdo', 'MD06G1137200' => 'mdo', 'MD07G1122300' => 'mdo', 'MD09G1078200' => 'mdo', 'MD13G1123700' => 'mdo', 'MD14G1151900' => 'mdo', 'MD17G1030900' => 'mdo', 'MD17G1068200' => 'mdo', 'MD17G1068600' => 'mdo', 'Medtr3g077540' => 'mtr', 'Medtr4g105530' => 'mtr', 'Medtr8g076580' => 'mtr', 'Medtr8g076590' => 'mtr', 'Medtr8g096410' => 'mtr', 'MELO3C016411.2' => 'cme', 'MELO3C017780.2' => 'cme', 'MELO3C022560.2' => 'cme', 'MELO3C026187.2' => 'cme', 'MELO3C026286.2' => 'cme', 'MELO3C032854.2' => 'cme', 'Migut.H02495' => 'egut', 'Migut.I00561' => 'egut', 'Migut.K01015' => 'egut', 'Migut.K01016' => 'egut', 'Migut.L00743' => 'egut', 'Migut.L00744' => 'egut', 'Migut.L00746' => 'egut', 'Migut.L00798' => 'egut', 'Migut.L00799' => 'egut', 'Migut.N02096' => 'egut', 'MSTRG.11259' => 'ama', 'MSTRG.23142' => 'ama', 'MSTRG.2499' => 'ama', 'Nitab4.5_0000003g0730' => 'nta', 'Nitab4.5_0000137g0020' => 'nta', 'Nitab4.5_0000721g0210' => 'nta', 'Nitab4.5_0000723g0050' => 'nta', 'Nitab4.5_0000913g0070' => 'nta', 'Nitab4.5_0001332g0040' => 'nta', 'Nitab4.5_0001771g0050' => 'nta', 'Nitab4.5_0001918g0050' => 'nta', 'Nitab4.5_0002686g0030' => 'nta', 'Nitab4.5_0003156g0020' => 'nta', 'Nitab4.5_0003383g0040' => 'nta', 'Nitab4.5_0003918g0010' => 'nta', 'Nitab4.5_0006760g0010' => 'nta', 'Nn1g05981' => 'nnu', 'Nn1g06288' => 'nnu', 'Nn3g16371' => 'nnu', 'Nn3g16786' => 'nnu', 'Nn4g22232' => 'nnu', 'Oeu005144.1' => 'oeu', 'Oeu005145.1' => 'oeu', 'Oeu011348.1' => 'oeu', 'Oeu016415.1' => 'oeu', 'Oeu023501.1' => 'oeu', 'Oeu044473.1' => 'oeu', 'Oeu048892.2' => 'oeu', 'Os01g0549200' => 'osa', 'Os02g0469300' => 'osa', 'Os04g0311100' => 'osa', 'Os06g0474900' => 'osa', 'Os10g0181700' => 'osa', 'Os11g0454800' => 'osa', 'Peaxi162Scf00037g00714' => 'pax', 'Peaxi162Scf00084g01217' => 'pax', 'Peaxi162Scf00257g00217' => 'pax', 'Peaxi162Scf00516g00215' => 'pax', 'Peaxi162Scf00689g00123' => 'pax', 'PGR044G2719' => 'pgr', 'PGR083G1360' => 'pgr', 'PGR102G2849' => 'pgr', 'PGR119G2534' => 'pgr', 'PGSC0003DMG400003538' => 'stu', 'PGSC0003DMG400028138' => 'stu', 'PGSC0003DMG400031732' => 'stu', 'PGSC0003DMG400038165' => 'stu', 'Phvul.002G284600' => 'pvu', 'Phvul.003G258200' => 'pvu', 'Phvul.009G176500' => 'pvu', 'Potri.003G167201' => 'ptr', 'Potri.005G118400' => 'ptr', 'Potri.012G089000' => 'ptr', 'Potri.012G102800' => 'ptr', 'Potri.015G079400' => 'ptr', 'Potri.015G100900' => 'ptr', 'Pp3c14_9810' => 'ppa', 'Pp3c15_10450' => 'ppa', 'Pp3c20_19150' => 'ppa', 'Pp3c23_12740' => 'ppa', 'Pp3c23_6310' => 'ppa', 'Pp3c24_3720' => 'ppa', 'Pp3c27_2580' => 'ppa', 'Pp3c9_8990' => 'ppa', 'PRCOL_00002854' => 'pco', 'Prupe.1G221200' => 'ppe', 'Prupe.3G289000' => 'ppe', 'Prupe.5G147000' => 'ppe', 'Prupe.6G157300' => 'ppe', 'Prupe.7G163400' => 'ppe', 'Psat0s2177g0040' => 'psa', 'Psat3g174760' => 'psa', 'Psat3g192160' => 'psa', 'Psat4g058520' => 'psa', 'Psat4g096840' => 'psa', 'Psat7g037320' => 'psa', 'PSO017G1274' => 'pso', 'PSO017G5166' => 'pso', 'PSO063G4558' => 'pso', 'PSO170G4458' => 'pso', 'PSO170G5005' => 'pso', 'PSO210G6156' => 'pso', 'PSO210G6635' => 'pso', 'PSO210G7397' => 'pso', 'PSO210G7700' => 'pso', 'PSO455G0035' => 'pso', 'PSO455G0180' => 'pso', 'PSO478G4515' => 'pso', 'PSO832G1305' => 'pso', 'PSO832G3489' => 'pso', 'QL02p075247' => 'qlo', 'QL03p051148' => 'qlo', 'QL05p010313' => 'qlo', 'QL06p034627' => 'qlo', 'QL10p001889' => 'qlo', 'QL10p010846' => 'qlo', 'RcHm_v2.0_Chr1g0350621' => 'rch', 'RcHm_v2.0_Chr1g0350641' => 'rch', 'RcHm_v2.0_Chr2g0092891' => 'rch', 'RcHm_v2.0_Chr2g0100251' => 'rch', 'RcHm_v2.0_Chr2g0158661' => 'rch', 'RcHm_v2.0_Chr2g0172741' => 'rch', 'RcHm_v2.0_Chr4g0429571' => 'rch', 'RcHm_v2.0_Chr5g0042471' => 'rch', 'RcHm_v2.0_Chr7g0189451' => 'rch', 'Rhsim08G0052000' => 'rsi', 'Rhsim08G0174400' => 'rsi', 'Rhsim08G0193200' => 'rsi', 'Rhsim10G0214800' => 'rsi', 'Rhsim10G0214900' => 'rsi', 'Rhsim10G0215000' => 'rsi', 'Rhsim12G0022900' => 'rsi', 'Rhsim12G0177500' => 'rsi', 'Rhsim12G0177700' => 'rsi', 'Sabra03G0122600' => 'sbr', 'Sabra05G0097400' => 'sbr', 'Sabra12G0064100' => 'sbr', 'Sabra15G0121300' => 'sbr', 'SalBow2G0642' => 'sbo', 'SalBow5G2667' => 'sbo', 'SalBow5G4873' => 'sbo', 'SalBow8G2395' => 'sbo', 'Sc03g0003290' => 'sci', 'Sc10g0010130' => 'sci', 'Sc22g0003650' => 'sci', 'Sed0001603' => 'sed', 'Sed0004259' => 'sed', 'Sed0006789' => 'sed', 'Sed0011838' => 'sed', 'Sed0012964' => 'sed', 'Sed0016383' => 'sed', 'Sed0019010' => 'sed', 'Sed0020188' => 'sed', 'SEGI_04702' => 'sgi', 'SEGI_17231' => 'sgi', 'SEGI_18877' => 'sgi', 'SEGI_25196' => 'sgi', 'SEGI_25515' => 'sgi', 'SEGI_28445' => 'sgi', 'SEGI_37452' => 'sgi', 'SGA_v2.0_scaffold188G40336' => 'sas', 'SGA_v2.0_scaffold228G43247' => 'sas', 'SGA_v2.0_scaffold280G46853' => 'sas', 'SGA_v2.0_scaffold34G13808' => 'sas', 'SGA_v2.0_scaffold40G15576' => 'sas', 'SGA_v2.0_scaffold611G53188' => 'sas', 'SGA_v2.0_scaffold78G25461' => 'sas', 'SGA_v2.0_scaffold90G27888' => 'sas', 'SHI08601' => 'shi', 'SHI08606' => 'shi', 'SHI17117' => 'shi', 'SHI17119' => 'shi', 'SMO118G0201' => 'smo', 'SMO169G0247' => 'smo', 'SMO176G0006' => 'smo', 'SMO176G0015' => 'smo', 'SMO202G0006' => 'smo', 'SMO240G0050' => 'smo', 'SMO286G0009' => 'smo', 'SMO338G0033' => 'smo', 'SMO356G0533' => 'smo', 'SMO364G0382' => 'smo', 'SMO367G0166' => 'smo', 'SMO367G1098' => 'smo', 'Solyc01g009920.3' => 'sly', 'Solyc01g099300.3' => 'sly', 'Solyc02g084700.3' => 'sly', 'Solyc03g097520.3' => 'sly', 'Solyc06g071580.3' => 'sly', 'Solyc10g081760.3' => 'sly', 'Sopen01g005480' => 'spe', 'Sopen01g042850' => 'spe', 'Sopen02g029370' => 'spe', 'Sopen03g028280' => 'spe', 'Sopen06g027870' => 'spe', 'Sopen10g032270' => 'spe', 'Sp5g18180' => 'spa', 'Sp6g12880' => 'spa', 'Sp6g30850' => 'spa', 'Sp7g22960' => 'spa', 'Sp7g34010' => 'spa', 'SpUn1326_0010' => 'spa', 'TAR371G0242' => 'tar', 'TAR622G0638' => 'tar', 'TAR628G1548' => 'tar', 'TAR629G1079' => 'tar', 'TAR629G3413' => 'tar', 'THA.LOC104804249' => 'tha', 'THA.LOC104808315' => 'tha', 'THA.LOC104809238' => 'tha', 'THA.LOC104825484' => 'tha', 'Thecc.01G025500' => 'tca', 'Thecc.03G015800' => 'tca', 'Thecc.03G018000' => 'tca', 'Thecc.03G134800' => 'tca', 'Thecc.04G014700' => 'tca', 'Thhalv10006991m.g' => 'esa', 'Thhalv10012707m.g' => 'esa', 'Thhalv10015739m.g' => 'esa', 'Thhalv10024553m.g' => 'esa', 'Thhalv10024673m.g' => 'esa', 'Thhalv10029187m.g' => 'esa', 'TPR.G12971' => 'tpr', 'TPR.G29396' => 'tpr', 'TPR.G33376' => 'tpr', 'TPR.G35508' => 'tpr', 'TPR.G35516' => 'tpr', 'TPR.G37317' => 'tpr', 'TPR.G37389' => 'tpr', 'TPR.G37523' => 'tpr', 'TPR.G559' => 'tpr', 'TWI14G0070' => 'twi', 'TWI14G0729' => 'twi', 'TWI18G0596' => 'twi', 'TWI39G0780' => 'twi', 'TWI39G0850' => 'twi', 'TWI73G1052' => 'twi', 'unitig_52.g17485' => 'ugi', 'unitig_61.g26355' => 'ugi', 'vmacro01040' => 'vma', 'vmacro16731' => 'vma', 'vmacro18270' => 'vma', 'vmacro19142' => 'vma', 'vmacro19407' => 'vma', 'vmacro19408' => 'vma', 'vmacro21899' => 'vma', 'vmacro21900' => 'vma', 'vmacro21901' => 'vma', 'VMungo0251G0490' => 'vmu', 'VMungo0251G1748' => 'vmu', 'VMungo1309G0421' => 'vmu', 'Zm00001eb086500' => 'zma', 'Zm00001eb150680' => 'zma', 'Zm00001eb162330' => 'zma', 'Zm00001eb203130' => 'zma', 'Zm00001eb369480' => 'zma', 'Zm00001eb382340' => 'zma', 'Zm00001eb416360' => 'zma' ) $gf_id = 'HOM05D000902' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000902' ) $data_identifier = 'HOM05D000902' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 13, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 10, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 6, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 9, 'hma' => (int) 12, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 4, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 6, 'ppa' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 6, 'rch' => (int) 9, 'rsi' => (int) 9, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 12, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 3, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416360' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000902', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '663', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02470' => 'bna', 'A01p16260' => 'bna', 'A02p01680' => 'bna', 'A03p16600' => 'bna', 'A03p55660' => 'bna', 'A03p64160' => 'bna', 'A03p64170' => 'bna', 'A08p31900' => 'bna', 'A09p59530' => 'bna', 'A10p08230' => 'bna', 'A10p25090' => 'bna', 'Aa31LG3G7100' => 'aar', 'Aa31LG3G7110' => 'aar', 'Aa31LG6G13160' => 'aar', 'Aa31LG7G10770' => 'aar', 'Aa31LG7G3830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2723' => 'aag', 'Actinidia08045' => 'ach', 'Actinidia08888' => 'ach', 'Actinidia18333' => 'ach', 'Actinidia19334' => 'ach', 'Actinidia25552' => 'ach', 'Actinidia26089' => 'ach', 'Actinidia30615' => 'ach', 'Actinidia30616' => 'ach', 'Actinidia33083' => 'ach', 'Actinidia35762' => 'ach', 'Ah.02g110620' => 'amhyb', 'Ah.11g046390' => 'amhyb', 'AL1G31670' => 'aly', 'AL6G23730' => 'aly', 'AL7G14740' => 'aly', 'AL7G14750' => 'aly', 'AL7G14760' => 'aly', 'AL7G28220' => 'aly', 'AL8G24940' => 'aly', 'Aqoxy3G01665' => 'aox', 'Aqoxy3G02853' => 'aox', 'Aqoxy5G01513' => 'aox', 'Aqoxy5G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8SKA4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ75LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKDA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0LJZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7REX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZP4YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWX7I5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2QKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS0L9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPCD8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q161UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC7XCF' => 'arhy', 'AT1G19100' => 'ath', 'AT4G24970' => 'ath', 'AT4G36270' => 'ath', 'AT4G36280' => 'ath', 'AT4G36290' => 'ath', 'AT5G13130' => 'ath', 'AT5G50780' => 'ath', 'ATR0582G266' => 'atr', 'ATR0661G195' => 'atr', 'ATR1152G031' => 'atr', 'Atru.chr11.2382' => 'acertr', 'Atru.chr12.2337' => 'acertr', 'Atru.chr3.744' => 'acertr', 'Atru.chr6.1870' => 'acertr', 'Atru.chr9.2515' => 'acertr', 'AUR62004120' => 'cqu', 'AUR62005667' => 'cqu', 'AUR62007634' => 'cqu', 'AUR62008186' => 'cqu', 'AUR62008187' => 'cqu', 'AUR62008188' => 'cqu', 'AUR62027954' => 'cqu', 'AUR62028766' => 'cqu', 'AUR62028767' => 'cqu', 'AUR62028768' => 'cqu', 'AUR62028886' => 'cqu', 'AUR62029563' => 'cqu', 'AUR62038832' => 'cqu', 'BcaB01g04149' => 'bca', 'BcaB03g12940' => 'bca', 'BcaB03g13090' => 'bca', 'BcaB03g14466' => 'bca', 'BcaB05g24035' => 'bca', 'BcaC01g06050' => 'bca', 'BcaC04g19148' => 'bca', 'BcaC04g20761' => 'bca', 'BcaC06g32845' => 'bca', 'BcaC07g41274' => 'bca', 'BcaC09g50827' => 'bca', 'BcaNung00741' => 'bca', 'BcaNung00742' => 'bca', 'BcaNung01859' => 'bca', 'BcaNung03985' => 'bca', 'BcaNung03989' => 'bca', 'BcaNung05661' => 'bca', 'BolC1t00257H' => 'bol', 'BolC1t01956H' => 'bol', 'BolC2t06534H' => 'bol', 'BolC3t14334H' => 'bol', 'BolC5t30451H' => 'bol', 'BolC7t45880H' => 'bol', 'BolC7t46586H' => 'bol', 'BolC8t49301H' => 'bol', 'BolC8t51837H' => 'bol', 'BolC9t56822H' => 'bol', 'BolC9t59235H' => 'bol', 'BraA01t00234Z' => 'bra', 'BraA01t01563Z' => 'bra', 'BraA02t05147Z' => 'bra', 'BraA03t10947Z' => 'bra', 'BraA03t14633Z' => 'bra', 'BraA08t35112Z' => 'bra', 'BraA09t41330Z' => 'bra', 'BraA10t44570Z' => 'bra', 'C01p02670' => 'bna', 'C01p20260' => 'bna', 'C02p05890' => 'bna', 'C03p19530' => 'bna', 'C05p17470' => 'bna', 'C07p53900' => 'bna', 'C07p61630' => 'bna', 'C08p16800' => 'bna', 'C08p42810' => 'bna', 'C09p39480' => 'bna', 'C09p63980' => 'bna', 'CAN.G1001.7' => 'can', 'CAN.G1034.55' => 'can', 'CAN.G143.7' => 'can', 'CAN.G3340.1' => 'can', 'CAN.G358.19' => 'can', 'CAN.G373.2' => 'can', 'CAN.G674.16' => 'can', 'CAN.G674.17' => 'can', 'CAN.G674.18' => 'can', 'CAN.G732.2' => 'can', 'CAN.G732.3' => 'can', 'CAN.G993.39' => 'can', 'CANSAT01G2052' => 'cansat', 'CANSAT80G0070' => 'cansat', 'CANSAT80G0483' => 'cansat', 'CANSAT80G0625' => 'cansat', 'CARHR019690' => 'chi', 'CARHR080280' => 'chi', 'CARHR152750' => 'chi', 'CARHR152760' => 'chi', 'CARHR152770' => 'chi', 'CARHR200340' => 'chi', 'CARHR232370' => 'chi', 'CARHR244670' => 'chi', 'CARHR244680' => 'chi', 'CARHR257520' => 'chi', 'Carub.0001s1872' => 'cru', 'Carub.0006s1130' => 'cru', 'Carub.0007s0396' => 'cru', 'Carub.0007s0397' => 'cru', 'Carub.0007s1608' => 'cru', 'Carub.0008s1068' => 'cru', 'Carub.0008s1077' => 'cru', 'Ca_16158_v3' => 'car', 'Ca_17571_v3' => 'car', 'Ca_21936_v3' => 'car', 'Ca_22350_v3' => 'car', 'CBR_g22445' => 'cbr', 'CBR_g26290' => 'cbr', 'Cc04_g09610' => 'ccan', 'Cc04_g12280' => 'ccan', 'Cc07_g10230' => 'ccan', 'CDE02G0093' => 'cde', 'CDE02G0701' => 'cde', 'CDE04G1050' => 'cde', 'CDE05G1833' => 'cde', 'CDE05G3058' => 'cde', 'CDE05G3380' => 'cde', 'CDE06G0536' => 'cde', 'Cfa006923' => 'cfa', 'Cfa009402' => 'cfa', 'Cfa018751' => 'cfa', 'Cfa019164' => 'cfa', 'Cfa022935' => 'cfa', 'Ciclev10019081m.g' => 'ccl', 'Ciclev10025076m.g' => 'ccl', 'Ciclev10030712m.g' => 'ccl', 'Ciclev10033760m.g' => 'ccl', 'CiPaw.05G105600' => 'cil', 'CiPaw.08G136700' => 'cil', 'CiPaw.11G003900' => 'cil', 'CiPaw.11G023700' => 'cil', 'CiPaw.12G003700' => 'cil', 'ClCG06G017100' => 'cla', 'ClCG06G018110' => 'cla', 'ClCG07G008800' => 'cla', 'ClCG07G015330' => 'cla', 'COL.COLO4_13698' => 'col', 'COL.COLO4_16659' => 'col', 'COL.COLO4_21986' => 'col', 'COL.COLO4_24049' => 'col', 'COL.COLO4_29061' => 'col', 'COL.COLO4_29075' => 'col', 'COL.COLO4_30094' => 'col', 'Cpa.g.c33689' => 'cpa', 'Cpa.g.sc108.39' => 'cpa', 'Cpa.g.sc108.41' => 'cpa', 'Cpa.g.sc1163.1' => 'cpa', 'Cpa.g.sc4.155' => 'cpa', 'Cpa.g.sc6.194' => 'cpa', 'CsaV3_1G000340' => 'csa', 'CsaV3_1G001400' => 'csa', 'CsaV3_4G002220' => 'csa', 'CsaV3_4G005370' => 'csa', 'CSS0007487' => 'camsi', 'CSS0008066' => 'camsi', 'CSS0009120' => 'camsi', 'CSS0015512' => 'camsi', 'CSS0022409' => 'camsi', 'CSS0025358' => 'camsi', 'CSS0044547' => 'camsi', 'DCAR_013057' => 'dca', 'DCAR_015058' => 'dca', 'DCAR_016027' => 'dca', 'DCAR_017327' => 'dca', 'DCAR_020743' => 'dca', 'DCAR_026157' => 'dca', 'DCAR_032339' => 'dca', 'DCAR_032340' => 'dca', 'Dinv11200' => 'din', 'Dinv11201' => 'din', 'Dinv20631' => 'din', 'Dinv23182' => 'din', 'Dinv33466' => 'din', 'Dinv33583' => 'din', 'Dinv38565' => 'din', 'Duzib068G0200' => 'dzi', 'Duzib147G0132' => 'dzi', 'Duzib147G0635' => 'dzi', 'Duzib205G1670' => 'dzi', 'Duzib251G0606' => 'dzi', 'ECA232G3336' => 'eca', 'ECA232G3763' => 'eca', 'ECA232G4845' => 'eca', 'ECA234G1607' => 'eca', 'ECA246G0932' => 'eca', 'ECA247G0781' => 'eca', 'ECA247G1932' => 'eca', 'ECA247G2079' => 'eca', 'ECA247G3338' => 'eca', 'ECA247G4115' => 'eca', 'EL10Ac3g06552' => 'bvu', 'EL10Ac5g10721' => 'bvu', 'EL10Ac5g10722' => 'bvu', 'EL10Ac5g10723' => 'bvu', 'EL10Ac5g11361' => 'bvu', 'EL10Ac6g13553' => 'bvu', 'EL10As8g23872' => 'bvu', 'Eucgr.B00250' => 'egr', 'Eucgr.B00251' => 'egr', 'Eucgr.B03533' => 'egr', 'Eucgr.I02381' => 'egr', 'Eucgr.K02700' => 'egr', 'FAN02G0174' => 'fan', 'FAN02G3146' => 'fan', 'FAN04G1672' => 'fan', 'FAN04G2273' => 'fan', 'FAN05G2791' => 'fan', 'FAN05G4035' => 'fan', 'FAN07G0834' => 'fan', 'FAN08G1198' => 'fan', 'FAN09G4182' => 'fan', 'FAN12G0496' => 'fan', 'FAN13G1027' => 'fan', 'FAN13G2951' => 'fan', 'FAN14G0705' => 'fan', 'FAN14G0720' => 'fan', 'FAN17G0201' => 'fan', 'FAN17G2665' => 'fan', 'FAN18G1456' => 'fan', 'FAN18G1525' => 'fan', 'FAN18G3500' => 'fan', 'FAN28G2670' => 'fan', 'FvH4_1g12391' => 'fve', 'FvH4_4g23220' => 'fve', 'FvH4_5g08810' => 'fve', 'FvH4_5g28960' => 'fve', 'FvH4_6g42820' => 'fve', 'FvH4_6g51110' => 'fve', 'Glyma.02G051802' => 'gma', 'Glyma.04G185300' => 'gma', 'Glyma.05G202900' => 'gma', 'Glyma.08G010300' => 'gma', 'Glyma.16G131900' => 'gma', 'Glyma.17G087900' => 'gma', 'Gohir.A07G048600' => 'ghi', 'Gohir.A11G179000' => 'ghi', 'Gohir.A12G140900' => 'ghi', 'Gohir.A12G140950' => 'ghi', 'Gohir.A12G191700' => 'ghi', 'Gohir.A13G086300' => 'ghi', 'Gohir.D07G052900' => 'ghi', 'Gohir.D11G186600' => 'ghi', 'Gohir.D12G145575' => 'ghi', 'Gohir.D12G145650' => 'ghi', 'Gohir.D12G145725' => 'ghi', 'Gohir.D12G194050' => 'ghi', 'Gohir.D13G091800' => 'ghi', 'Gorai.001G055900' => 'gra', 'Gorai.007G198400' => 'gra', 'Gorai.008G157000' => 'gra', 'Gorai.008G157100' => 'gra', 'Gorai.008G208700' => 'gra', 'Gorai.010G138700' => 'gra', 'GSVIVG01000977001' => 'vvi', 'GSVIVG01007708001' => 'vvi', 'GSVIVG01008587001' => 'vvi', 'GSVIVG01018849001' => 'vvi', 'GSVIVG01032432001' => 'vvi', 'HanXRQChr02g0034131' => 'han', 'HanXRQChr02g0035981' => 'han', 'HanXRQChr02g0035991' => 'han', 'HanXRQChr05g0155611' => 'han', 'HanXRQChr05g0155621' => 'han', 'HanXRQChr08g0236501' => 'han', 'HanXRQChr09g0261321' => 'han', 'HanXRQChr09g0272081' => 'han', 'HanXRQChr10g0310741' => 'han', 'HanXRQChr11g0325591' => 'han', 'HanXRQChr12g0385691' => 'han', 'HanXRQChr13g0387801' => 'han', 'HanXRQChr15g0463011' => 'han', 'Haze_03826' => 'cav', 'Haze_03827' => 'cav', 'Haze_07183' => 'cav', 'Haze_07537' => 'cav', 'Haze_07539' => 'cav', 'Haze_12461' => 'cav', 'Haze_16115' => 'cav', 'Haze_16808' => 'cav', 'Haze_18531' => 'cav', 'Hma1.2p1_0046F.1_g026700' => 'hma', 'Hma1.2p1_0046F.1_g026710' => 'hma', 'Hma1.2p1_0168F.1_g074340' => 'hma', 'Hma1.2p1_0266F.1_g107030' => 'hma', 'Hma1.2p1_0266F.1_g107060' => 'hma', 'Hma1.2p1_0275F.1_g110510' => 'hma', 'Hma1.2p1_0592F.1_g185490' => 'hma', 'Hma1.2p1_0592F.1_g185500' => 'hma', 'Hma1.2p1_0592F.1_g185510' => 'hma', 'Hma1.2p1_0592F.1_g185520' => 'hma', 'Hma1.2p1_0592F.1_g185530' => 'hma', 'Hma1.2p1_0818F.1_g223450' => 'hma', 'HPP92_009708' => 'vpl', 'HPP92_009793' => 'vpl', 'HPP92_009796' => 'vpl', 'HPP92_009797' => 'vpl', 'HPP92_014940' => 'vpl', 'HPP92_014988' => 'vpl', 'Hund02463' => 'sun', 'Hund02760' => 'sun', 'Hund05071' => 'sun', 'Hund10108' => 'sun', 'Hund11204' => 'sun', 'Hund14016' => 'sun', 'Hund16464' => 'sun', 'Lalb_Chr09g0333391' => 'lal', 'Lalb_Chr11g0070461' => 'lal', 'Lalb_Chr12g0201671' => 'lal', 'Lalb_Chr13g0297161' => 'lal', 'Lj1g0002823' => 'lja', 'Lj3C1074T6' => 'lonja', 'Lj4A212T28' => 'lonja', 'Lj4g0005516' => 'lja', 'Lj4g0013705' => 'lja', 'Lj4g0027865' => 'lja', 'Lj5C92G16' => 'lonja', 'Lj5C92T12' => 'lonja', 'Lj7C596T3' => 'lonja', 'Lj9A446G59' => 'lonja', 'Lj9A482G21' => 'lonja', 'Lsat_1_v5_gn_1_28261' => 'lsa', 'Lsat_1_v5_gn_1_28281' => 'lsa', 'Lsat_1_v5_gn_1_32721' => 'lsa', 'Lsat_1_v5_gn_4_151760' => 'lsa', 'Lsat_1_v5_gn_4_2120' => 'lsa', 'Lsat_1_v5_gn_4_75761' => 'lsa', 'Lsat_1_v5_gn_5_10920' => 'lsa', 'Manes.02G099900' => 'mes', 'Manes.11G096200' => 'mes', 'Manes.12G007200' => 'mes', 'Manes.14G048300' => 'mes', 'Manes.17G114700' => 'mes', 'Mapoly0002s0070' => 'mpo', 'Mapoly0029s0099' => 'mpo', 'MBI07_g24742_MAGBIO' => 'mbi', 'MBI10_g27988_MAGBIO' => 'mbi', 'MBI11_g13057_MAGBIO' => 'mbi', 'MD02G1137200' => 'mdo', 'MD06G1137200' => 'mdo', 'MD07G1122300' => 'mdo', 'MD09G1078200' => 'mdo', 'MD13G1123700' => 'mdo', 'MD14G1151900' => 'mdo', 'MD17G1030900' => 'mdo', 'MD17G1068200' => 'mdo', 'MD17G1068600' => 'mdo', 'Medtr3g077540' => 'mtr', 'Medtr4g105530' => 'mtr', 'Medtr8g076580' => 'mtr', 'Medtr8g076590' => 'mtr', 'Medtr8g096410' => 'mtr', 'MELO3C016411.2' => 'cme', 'MELO3C017780.2' => 'cme', 'MELO3C022560.2' => 'cme', 'MELO3C026187.2' => 'cme', 'MELO3C026286.2' => 'cme', 'MELO3C032854.2' => 'cme', 'Migut.H02495' => 'egut', 'Migut.I00561' => 'egut', 'Migut.K01015' => 'egut', 'Migut.K01016' => 'egut', 'Migut.L00743' => 'egut', 'Migut.L00744' => 'egut', 'Migut.L00746' => 'egut', 'Migut.L00798' => 'egut', 'Migut.L00799' => 'egut', 'Migut.N02096' => 'egut', 'MSTRG.11259' => 'ama', 'MSTRG.23142' => 'ama', 'MSTRG.2499' => 'ama', 'Nitab4.5_0000003g0730' => 'nta', 'Nitab4.5_0000137g0020' => 'nta', 'Nitab4.5_0000721g0210' => 'nta', 'Nitab4.5_0000723g0050' => 'nta', 'Nitab4.5_0000913g0070' => 'nta', 'Nitab4.5_0001332g0040' => 'nta', 'Nitab4.5_0001771g0050' => 'nta', 'Nitab4.5_0001918g0050' => 'nta', 'Nitab4.5_0002686g0030' => 'nta', 'Nitab4.5_0003156g0020' => 'nta', 'Nitab4.5_0003383g0040' => 'nta', 'Nitab4.5_0003918g0010' => 'nta', 'Nitab4.5_0006760g0010' => 'nta', 'Nn1g05981' => 'nnu', 'Nn1g06288' => 'nnu', 'Nn3g16371' => 'nnu', 'Nn3g16786' => 'nnu', 'Nn4g22232' => 'nnu', 'Oeu005144.1' => 'oeu', 'Oeu005145.1' => 'oeu', 'Oeu011348.1' => 'oeu', 'Oeu016415.1' => 'oeu', 'Oeu023501.1' => 'oeu', 'Oeu044473.1' => 'oeu', 'Oeu048892.2' => 'oeu', 'Os01g0549200' => 'osa', 'Os02g0469300' => 'osa', 'Os04g0311100' => 'osa', 'Os06g0474900' => 'osa', 'Os10g0181700' => 'osa', 'Os11g0454800' => 'osa', 'Peaxi162Scf00037g00714' => 'pax', 'Peaxi162Scf00084g01217' => 'pax', 'Peaxi162Scf00257g00217' => 'pax', 'Peaxi162Scf00516g00215' => 'pax', 'Peaxi162Scf00689g00123' => 'pax', 'PGR044G2719' => 'pgr', 'PGR083G1360' => 'pgr', 'PGR102G2849' => 'pgr', 'PGR119G2534' => 'pgr', 'PGSC0003DMG400003538' => 'stu', 'PGSC0003DMG400028138' => 'stu', 'PGSC0003DMG400031732' => 'stu', 'PGSC0003DMG400038165' => 'stu', 'Phvul.002G284600' => 'pvu', 'Phvul.003G258200' => 'pvu', 'Phvul.009G176500' => 'pvu', 'Potri.003G167201' => 'ptr', 'Potri.005G118400' => 'ptr', 'Potri.012G089000' => 'ptr', 'Potri.012G102800' => 'ptr', 'Potri.015G079400' => 'ptr', 'Potri.015G100900' => 'ptr', 'Pp3c14_9810' => 'ppa', 'Pp3c15_10450' => 'ppa', 'Pp3c20_19150' => 'ppa', 'Pp3c23_12740' => 'ppa', 'Pp3c23_6310' => 'ppa', 'Pp3c24_3720' => 'ppa', 'Pp3c27_2580' => 'ppa', 'Pp3c9_8990' => 'ppa', 'PRCOL_00002854' => 'pco', 'Prupe.1G221200' => 'ppe', 'Prupe.3G289000' => 'ppe', 'Prupe.5G147000' => 'ppe', 'Prupe.6G157300' => 'ppe', 'Prupe.7G163400' => 'ppe', 'Psat0s2177g0040' => 'psa', 'Psat3g174760' => 'psa', 'Psat3g192160' => 'psa', 'Psat4g058520' => 'psa', 'Psat4g096840' => 'psa', 'Psat7g037320' => 'psa', 'PSO017G1274' => 'pso', 'PSO017G5166' => 'pso', 'PSO063G4558' => 'pso', 'PSO170G4458' => 'pso', 'PSO170G5005' => 'pso', 'PSO210G6156' => 'pso', 'PSO210G6635' => 'pso', 'PSO210G7397' => 'pso', 'PSO210G7700' => 'pso', 'PSO455G0035' => 'pso', 'PSO455G0180' => 'pso', 'PSO478G4515' => 'pso', 'PSO832G1305' => 'pso', 'PSO832G3489' => 'pso', 'QL02p075247' => 'qlo', 'QL03p051148' => 'qlo', 'QL05p010313' => 'qlo', 'QL06p034627' => 'qlo', 'QL10p001889' => 'qlo', 'QL10p010846' => 'qlo', 'RcHm_v2.0_Chr1g0350621' => 'rch', 'RcHm_v2.0_Chr1g0350641' => 'rch', 'RcHm_v2.0_Chr2g0092891' => 'rch', 'RcHm_v2.0_Chr2g0100251' => 'rch', 'RcHm_v2.0_Chr2g0158661' => 'rch', 'RcHm_v2.0_Chr2g0172741' => 'rch', 'RcHm_v2.0_Chr4g0429571' => 'rch', 'RcHm_v2.0_Chr5g0042471' => 'rch', 'RcHm_v2.0_Chr7g0189451' => 'rch', 'Rhsim08G0052000' => 'rsi', 'Rhsim08G0174400' => 'rsi', 'Rhsim08G0193200' => 'rsi', 'Rhsim10G0214800' => 'rsi', 'Rhsim10G0214900' => 'rsi', 'Rhsim10G0215000' => 'rsi', 'Rhsim12G0022900' => 'rsi', 'Rhsim12G0177500' => 'rsi', 'Rhsim12G0177700' => 'rsi', 'Sabra03G0122600' => 'sbr', 'Sabra05G0097400' => 'sbr', 'Sabra12G0064100' => 'sbr', 'Sabra15G0121300' => 'sbr', 'SalBow2G0642' => 'sbo', 'SalBow5G2667' => 'sbo', 'SalBow5G4873' => 'sbo', 'SalBow8G2395' => 'sbo', 'Sc03g0003290' => 'sci', 'Sc10g0010130' => 'sci', 'Sc22g0003650' => 'sci', 'Sed0001603' => 'sed', 'Sed0004259' => 'sed', 'Sed0006789' => 'sed', 'Sed0011838' => 'sed', 'Sed0012964' => 'sed', 'Sed0016383' => 'sed', 'Sed0019010' => 'sed', 'Sed0020188' => 'sed', 'SEGI_04702' => 'sgi', 'SEGI_17231' => 'sgi', 'SEGI_18877' => 'sgi', 'SEGI_25196' => 'sgi', 'SEGI_25515' => 'sgi', 'SEGI_28445' => 'sgi', 'SEGI_37452' => 'sgi', 'SGA_v2.0_scaffold188G40336' => 'sas', 'SGA_v2.0_scaffold228G43247' => 'sas', 'SGA_v2.0_scaffold280G46853' => 'sas', 'SGA_v2.0_scaffold34G13808' => 'sas', 'SGA_v2.0_scaffold40G15576' => 'sas', 'SGA_v2.0_scaffold611G53188' => 'sas', 'SGA_v2.0_scaffold78G25461' => 'sas', 'SGA_v2.0_scaffold90G27888' => 'sas', 'SHI08601' => 'shi', 'SHI08606' => 'shi', 'SHI17117' => 'shi', 'SHI17119' => 'shi', 'SMO118G0201' => 'smo', 'SMO169G0247' => 'smo', 'SMO176G0006' => 'smo', 'SMO176G0015' => 'smo', 'SMO202G0006' => 'smo', 'SMO240G0050' => 'smo', 'SMO286G0009' => 'smo', 'SMO338G0033' => 'smo', 'SMO356G0533' => 'smo', 'SMO364G0382' => 'smo', 'SMO367G0166' => 'smo', 'SMO367G1098' => 'smo', 'Solyc01g009920.3' => 'sly', 'Solyc01g099300.3' => 'sly', 'Solyc02g084700.3' => 'sly', 'Solyc03g097520.3' => 'sly', 'Solyc06g071580.3' => 'sly', 'Solyc10g081760.3' => 'sly', 'Sopen01g005480' => 'spe', 'Sopen01g042850' => 'spe', 'Sopen02g029370' => 'spe', 'Sopen03g028280' => 'spe', 'Sopen06g027870' => 'spe', 'Sopen10g032270' => 'spe', 'Sp5g18180' => 'spa', 'Sp6g12880' => 'spa', 'Sp6g30850' => 'spa', 'Sp7g22960' => 'spa', 'Sp7g34010' => 'spa', 'SpUn1326_0010' => 'spa', 'TAR371G0242' => 'tar', 'TAR622G0638' => 'tar', 'TAR628G1548' => 'tar', 'TAR629G1079' => 'tar', 'TAR629G3413' => 'tar', 'THA.LOC104804249' => 'tha', 'THA.LOC104808315' => 'tha', 'THA.LOC104809238' => 'tha', 'THA.LOC104825484' => 'tha', 'Thecc.01G025500' => 'tca', 'Thecc.03G015800' => 'tca', 'Thecc.03G018000' => 'tca', 'Thecc.03G134800' => 'tca', 'Thecc.04G014700' => 'tca', 'Thhalv10006991m.g' => 'esa', 'Thhalv10012707m.g' => 'esa', 'Thhalv10015739m.g' => 'esa', 'Thhalv10024553m.g' => 'esa', 'Thhalv10024673m.g' => 'esa', 'Thhalv10029187m.g' => 'esa', 'TPR.G12971' => 'tpr', 'TPR.G29396' => 'tpr', 'TPR.G33376' => 'tpr', 'TPR.G35508' => 'tpr', 'TPR.G35516' => 'tpr', 'TPR.G37317' => 'tpr', 'TPR.G37389' => 'tpr', 'TPR.G37523' => 'tpr', 'TPR.G559' => 'tpr', 'TWI14G0070' => 'twi', 'TWI14G0729' => 'twi', 'TWI18G0596' => 'twi', 'TWI39G0780' => 'twi', 'TWI39G0850' => 'twi', 'TWI73G1052' => 'twi', 'unitig_52.g17485' => 'ugi', 'unitig_61.g26355' => 'ugi', 'vmacro01040' => 'vma', 'vmacro16731' => 'vma', 'vmacro18270' => 'vma', 'vmacro19142' => 'vma', 'vmacro19407' => 'vma', 'vmacro19408' => 'vma', 'vmacro21899' => 'vma', 'vmacro21900' => 'vma', 'vmacro21901' => 'vma', 'VMungo0251G0490' => 'vmu', 'VMungo0251G1748' => 'vmu', 'VMungo1309G0421' => 'vmu', 'Zm00001eb086500' => 'zma', 'Zm00001eb150680' => 'zma', 'Zm00001eb162330' => 'zma', 'Zm00001eb203130' => 'zma', 'Zm00001eb369480' => 'zma', 'Zm00001eb382340' => 'zma', 'Zm00001eb416360' => 'zma' ), 'gf_id' => 'HOM05D000902', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000902' ), 'data_identifier' => 'HOM05D000902', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000902', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '663', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02470' => 'bna', 'A01p16260' => 'bna', 'A02p01680' => 'bna', 'A03p16600' => 'bna', 'A03p55660' => 'bna', 'A03p64160' => 'bna', 'A03p64170' => 'bna', 'A08p31900' => 'bna', 'A09p59530' => 'bna', 'A10p08230' => 'bna', 'A10p25090' => 'bna', 'Aa31LG3G7100' => 'aar', 'Aa31LG3G7110' => 'aar', 'Aa31LG6G13160' => 'aar', 'Aa31LG7G10770' => 'aar', 'Aa31LG7G3830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2723' => 'aag', 'Actinidia08045' => 'ach', 'Actinidia08888' => 'ach', 'Actinidia18333' => 'ach', 'Actinidia19334' => 'ach', 'Actinidia25552' => 'ach', 'Actinidia26089' => 'ach', 'Actinidia30615' => 'ach', 'Actinidia30616' => 'ach', 'Actinidia33083' => 'ach', 'Actinidia35762' => 'ach', 'Ah.02g110620' => 'amhyb', 'Ah.11g046390' => 'amhyb', 'AL1G31670' => 'aly', 'AL6G23730' => 'aly', 'AL7G14740' => 'aly', 'AL7G14750' => 'aly', 'AL7G14760' => 'aly', 'AL7G28220' => 'aly', 'AL8G24940' => 'aly', 'Aqoxy3G01665' => 'aox', 'Aqoxy3G02853' => 'aox', 'Aqoxy5G01513' => 'aox', 'Aqoxy5G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8SKA4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ75LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKDA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0LJZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7REX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZP4YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWX7I5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2QKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS0L9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPCD8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q161UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC7XCF' => 'arhy', 'AT1G19100' => 'ath', 'AT4G24970' => 'ath', 'AT4G36270' => 'ath', 'AT4G36280' => 'ath', 'AT4G36290' => 'ath', 'AT5G13130' => 'ath', 'AT5G50780' => 'ath', 'ATR0582G266' => 'atr', 'ATR0661G195' => 'atr', 'ATR1152G031' => 'atr', 'Atru.chr11.2382' => 'acertr', 'Atru.chr12.2337' => 'acertr', 'Atru.chr3.744' => 'acertr', 'Atru.chr6.1870' => 'acertr', 'Atru.chr9.2515' => 'acertr', 'AUR62004120' => 'cqu', 'AUR62005667' => 'cqu', 'AUR62007634' => 'cqu', 'AUR62008186' => 'cqu', 'AUR62008187' => 'cqu', 'AUR62008188' => 'cqu', 'AUR62027954' => 'cqu', 'AUR62028766' => 'cqu', 'AUR62028767' => 'cqu', 'AUR62028768' => 'cqu', 'AUR62028886' => 'cqu', 'AUR62029563' => 'cqu', 'AUR62038832' => 'cqu', 'BcaB01g04149' => 'bca', 'BcaB03g12940' => 'bca', 'BcaB03g13090' => 'bca', 'BcaB03g14466' => 'bca', 'BcaB05g24035' => 'bca', 'BcaC01g06050' => 'bca', 'BcaC04g19148' => 'bca', 'BcaC04g20761' => 'bca', 'BcaC06g32845' => 'bca', 'BcaC07g41274' => 'bca', 'BcaC09g50827' => 'bca', 'BcaNung00741' => 'bca', 'BcaNung00742' => 'bca', 'BcaNung01859' => 'bca', 'BcaNung03985' => 'bca', 'BcaNung03989' => 'bca', 'BcaNung05661' => 'bca', 'BolC1t00257H' => 'bol', 'BolC1t01956H' => 'bol', 'BolC2t06534H' => 'bol', 'BolC3t14334H' => 'bol', 'BolC5t30451H' => 'bol', 'BolC7t45880H' => 'bol', 'BolC7t46586H' => 'bol', 'BolC8t49301H' => 'bol', 'BolC8t51837H' => 'bol', 'BolC9t56822H' => 'bol', 'BolC9t59235H' => 'bol', 'BraA01t00234Z' => 'bra', 'BraA01t01563Z' => 'bra', 'BraA02t05147Z' => 'bra', 'BraA03t10947Z' => 'bra', 'BraA03t14633Z' => 'bra', 'BraA08t35112Z' => 'bra', 'BraA09t41330Z' => 'bra', 'BraA10t44570Z' => 'bra', 'C01p02670' => 'bna', 'C01p20260' => 'bna', 'C02p05890' => 'bna', 'C03p19530' => 'bna', 'C05p17470' => 'bna', 'C07p53900' => 'bna', 'C07p61630' => 'bna', 'C08p16800' => 'bna', 'C08p42810' => 'bna', 'C09p39480' => 'bna', 'C09p63980' => 'bna', 'CAN.G1001.7' => 'can', 'CAN.G1034.55' => 'can', 'CAN.G143.7' => 'can', 'CAN.G3340.1' => 'can', 'CAN.G358.19' => 'can', 'CAN.G373.2' => 'can', 'CAN.G674.16' => 'can', 'CAN.G674.17' => 'can', 'CAN.G674.18' => 'can', 'CAN.G732.2' => 'can', 'CAN.G732.3' => 'can', 'CAN.G993.39' => 'can', 'CANSAT01G2052' => 'cansat', 'CANSAT80G0070' => 'cansat', 'CANSAT80G0483' => 'cansat', 'CANSAT80G0625' => 'cansat', 'CARHR019690' => 'chi', 'CARHR080280' => 'chi', 'CARHR152750' => 'chi', 'CARHR152760' => 'chi', 'CARHR152770' => 'chi', 'CARHR200340' => 'chi', 'CARHR232370' => 'chi', 'CARHR244670' => 'chi', 'CARHR244680' => 'chi', 'CARHR257520' => 'chi', 'Carub.0001s1872' => 'cru', 'Carub.0006s1130' => 'cru', 'Carub.0007s0396' => 'cru', 'Carub.0007s0397' => 'cru', 'Carub.0007s1608' => 'cru', 'Carub.0008s1068' => 'cru', 'Carub.0008s1077' => 'cru', 'Ca_16158_v3' => 'car', 'Ca_17571_v3' => 'car', 'Ca_21936_v3' => 'car', 'Ca_22350_v3' => 'car', 'CBR_g22445' => 'cbr', 'CBR_g26290' => 'cbr', 'Cc04_g09610' => 'ccan', 'Cc04_g12280' => 'ccan', 'Cc07_g10230' => 'ccan', 'CDE02G0093' => 'cde', 'CDE02G0701' => 'cde', 'CDE04G1050' => 'cde', 'CDE05G1833' => 'cde', 'CDE05G3058' => 'cde', 'CDE05G3380' => 'cde', 'CDE06G0536' => 'cde', 'Cfa006923' => 'cfa', 'Cfa009402' => 'cfa', 'Cfa018751' => 'cfa', 'Cfa019164' => 'cfa', 'Cfa022935' => 'cfa', 'Ciclev10019081m.g' => 'ccl', 'Ciclev10025076m.g' => 'ccl', 'Ciclev10030712m.g' => 'ccl', 'Ciclev10033760m.g' => 'ccl', 'CiPaw.05G105600' => 'cil', 'CiPaw.08G136700' => 'cil', 'CiPaw.11G003900' => 'cil', 'CiPaw.11G023700' => 'cil', 'CiPaw.12G003700' => 'cil', 'ClCG06G017100' => 'cla', 'ClCG06G018110' => 'cla', 'ClCG07G008800' => 'cla', 'ClCG07G015330' => 'cla', 'COL.COLO4_13698' => 'col', 'COL.COLO4_16659' => 'col', 'COL.COLO4_21986' => 'col', 'COL.COLO4_24049' => 'col', 'COL.COLO4_29061' => 'col', 'COL.COLO4_29075' => 'col', 'COL.COLO4_30094' => 'col', 'Cpa.g.c33689' => 'cpa', 'Cpa.g.sc108.39' => 'cpa', 'Cpa.g.sc108.41' => 'cpa', 'Cpa.g.sc1163.1' => 'cpa', 'Cpa.g.sc4.155' => 'cpa', 'Cpa.g.sc6.194' => 'cpa', 'CsaV3_1G000340' => 'csa', 'CsaV3_1G001400' => 'csa', 'CsaV3_4G002220' => 'csa', 'CsaV3_4G005370' => 'csa', 'CSS0007487' => 'camsi', 'CSS0008066' => 'camsi', 'CSS0009120' => 'camsi', 'CSS0015512' => 'camsi', 'CSS0022409' => 'camsi', 'CSS0025358' => 'camsi', 'CSS0044547' => 'camsi', 'DCAR_013057' => 'dca', 'DCAR_015058' => 'dca', 'DCAR_016027' => 'dca', 'DCAR_017327' => 'dca', 'DCAR_020743' => 'dca', 'DCAR_026157' => 'dca', 'DCAR_032339' => 'dca', 'DCAR_032340' => 'dca', 'Dinv11200' => 'din', 'Dinv11201' => 'din', 'Dinv20631' => 'din', 'Dinv23182' => 'din', 'Dinv33466' => 'din', 'Dinv33583' => 'din', 'Dinv38565' => 'din', 'Duzib068G0200' => 'dzi', 'Duzib147G0132' => 'dzi', 'Duzib147G0635' => 'dzi', 'Duzib205G1670' => 'dzi', 'Duzib251G0606' => 'dzi', 'ECA232G3336' => 'eca', 'ECA232G3763' => 'eca', 'ECA232G4845' => 'eca', 'ECA234G1607' => 'eca', 'ECA246G0932' => 'eca', 'ECA247G0781' => 'eca', 'ECA247G1932' => 'eca', 'ECA247G2079' => 'eca', 'ECA247G3338' => 'eca', 'ECA247G4115' => 'eca', 'EL10Ac3g06552' => 'bvu', 'EL10Ac5g10721' => 'bvu', 'EL10Ac5g10722' => 'bvu', 'EL10Ac5g10723' => 'bvu', 'EL10Ac5g11361' => 'bvu', 'EL10Ac6g13553' => 'bvu', 'EL10As8g23872' => 'bvu', 'Eucgr.B00250' => 'egr', 'Eucgr.B00251' => 'egr', 'Eucgr.B03533' => 'egr', 'Eucgr.I02381' => 'egr', 'Eucgr.K02700' => 'egr', 'FAN02G0174' => 'fan', 'FAN02G3146' => 'fan', 'FAN04G1672' => 'fan', 'FAN04G2273' => 'fan', 'FAN05G2791' => 'fan', 'FAN05G4035' => 'fan', 'FAN07G0834' => 'fan', 'FAN08G1198' => 'fan', 'FAN09G4182' => 'fan', 'FAN12G0496' => 'fan', 'FAN13G1027' => 'fan', 'FAN13G2951' => 'fan', 'FAN14G0705' => 'fan', 'FAN14G0720' => 'fan', 'FAN17G0201' => 'fan', 'FAN17G2665' => 'fan', 'FAN18G1456' => 'fan', 'FAN18G1525' => 'fan', 'FAN18G3500' => 'fan', 'FAN28G2670' => 'fan', 'FvH4_1g12391' => 'fve', 'FvH4_4g23220' => 'fve', 'FvH4_5g08810' => 'fve', 'FvH4_5g28960' => 'fve', 'FvH4_6g42820' => 'fve', 'FvH4_6g51110' => 'fve', 'Glyma.02G051802' => 'gma', 'Glyma.04G185300' => 'gma', 'Glyma.05G202900' => 'gma', 'Glyma.08G010300' => 'gma', 'Glyma.16G131900' => 'gma', 'Glyma.17G087900' => 'gma', 'Gohir.A07G048600' => 'ghi', 'Gohir.A11G179000' => 'ghi', 'Gohir.A12G140900' => 'ghi', 'Gohir.A12G140950' => 'ghi', 'Gohir.A12G191700' => 'ghi', 'Gohir.A13G086300' => 'ghi', 'Gohir.D07G052900' => 'ghi', 'Gohir.D11G186600' => 'ghi', 'Gohir.D12G145575' => 'ghi', 'Gohir.D12G145650' => 'ghi', 'Gohir.D12G145725' => 'ghi', 'Gohir.D12G194050' => 'ghi', 'Gohir.D13G091800' => 'ghi', 'Gorai.001G055900' => 'gra', 'Gorai.007G198400' => 'gra', 'Gorai.008G157000' => 'gra', 'Gorai.008G157100' => 'gra', 'Gorai.008G208700' => 'gra', 'Gorai.010G138700' => 'gra', 'GSVIVG01000977001' => 'vvi', 'GSVIVG01007708001' => 'vvi', 'GSVIVG01008587001' => 'vvi', 'GSVIVG01018849001' => 'vvi', 'GSVIVG01032432001' => 'vvi', 'HanXRQChr02g0034131' => 'han', 'HanXRQChr02g0035981' => 'han', 'HanXRQChr02g0035991' => 'han', 'HanXRQChr05g0155611' => 'han', 'HanXRQChr05g0155621' => 'han', 'HanXRQChr08g0236501' => 'han', 'HanXRQChr09g0261321' => 'han', 'HanXRQChr09g0272081' => 'han', 'HanXRQChr10g0310741' => 'han', 'HanXRQChr11g0325591' => 'han', 'HanXRQChr12g0385691' => 'han', 'HanXRQChr13g0387801' => 'han', 'HanXRQChr15g0463011' => 'han', 'Haze_03826' => 'cav', 'Haze_03827' => 'cav', 'Haze_07183' => 'cav', 'Haze_07537' => 'cav', 'Haze_07539' => 'cav', 'Haze_12461' => 'cav', 'Haze_16115' => 'cav', 'Haze_16808' => 'cav', 'Haze_18531' => 'cav', 'Hma1.2p1_0046F.1_g026700' => 'hma', 'Hma1.2p1_0046F.1_g026710' => 'hma', 'Hma1.2p1_0168F.1_g074340' => 'hma', 'Hma1.2p1_0266F.1_g107030' => 'hma', 'Hma1.2p1_0266F.1_g107060' => 'hma', 'Hma1.2p1_0275F.1_g110510' => 'hma', 'Hma1.2p1_0592F.1_g185490' => 'hma', 'Hma1.2p1_0592F.1_g185500' => 'hma', 'Hma1.2p1_0592F.1_g185510' => 'hma', 'Hma1.2p1_0592F.1_g185520' => 'hma', 'Hma1.2p1_0592F.1_g185530' => 'hma', 'Hma1.2p1_0818F.1_g223450' => 'hma', 'HPP92_009708' => 'vpl', 'HPP92_009793' => 'vpl', 'HPP92_009796' => 'vpl', 'HPP92_009797' => 'vpl', 'HPP92_014940' => 'vpl', 'HPP92_014988' => 'vpl', 'Hund02463' => 'sun', 'Hund02760' => 'sun', 'Hund05071' => 'sun', 'Hund10108' => 'sun', 'Hund11204' => 'sun', 'Hund14016' => 'sun', 'Hund16464' => 'sun', 'Lalb_Chr09g0333391' => 'lal', 'Lalb_Chr11g0070461' => 'lal', 'Lalb_Chr12g0201671' => 'lal', 'Lalb_Chr13g0297161' => 'lal', 'Lj1g0002823' => 'lja', 'Lj3C1074T6' => 'lonja', 'Lj4A212T28' => 'lonja', 'Lj4g0005516' => 'lja', 'Lj4g0013705' => 'lja', 'Lj4g0027865' => 'lja', 'Lj5C92G16' => 'lonja', 'Lj5C92T12' => 'lonja', 'Lj7C596T3' => 'lonja', 'Lj9A446G59' => 'lonja', 'Lj9A482G21' => 'lonja', 'Lsat_1_v5_gn_1_28261' => 'lsa', 'Lsat_1_v5_gn_1_28281' => 'lsa', 'Lsat_1_v5_gn_1_32721' => 'lsa', 'Lsat_1_v5_gn_4_151760' => 'lsa', 'Lsat_1_v5_gn_4_2120' => 'lsa', 'Lsat_1_v5_gn_4_75761' => 'lsa', 'Lsat_1_v5_gn_5_10920' => 'lsa', 'Manes.02G099900' => 'mes', 'Manes.11G096200' => 'mes', 'Manes.12G007200' => 'mes', 'Manes.14G048300' => 'mes', 'Manes.17G114700' => 'mes', 'Mapoly0002s0070' => 'mpo', 'Mapoly0029s0099' => 'mpo', 'MBI07_g24742_MAGBIO' => 'mbi', 'MBI10_g27988_MAGBIO' => 'mbi', 'MBI11_g13057_MAGBIO' => 'mbi', 'MD02G1137200' => 'mdo', 'MD06G1137200' => 'mdo', 'MD07G1122300' => 'mdo', 'MD09G1078200' => 'mdo', 'MD13G1123700' => 'mdo', 'MD14G1151900' => 'mdo', 'MD17G1030900' => 'mdo', 'MD17G1068200' => 'mdo', 'MD17G1068600' => 'mdo', 'Medtr3g077540' => 'mtr', 'Medtr4g105530' => 'mtr', 'Medtr8g076580' => 'mtr', 'Medtr8g076590' => 'mtr', 'Medtr8g096410' => 'mtr', 'MELO3C016411.2' => 'cme', 'MELO3C017780.2' => 'cme', 'MELO3C022560.2' => 'cme', 'MELO3C026187.2' => 'cme', 'MELO3C026286.2' => 'cme', 'MELO3C032854.2' => 'cme', 'Migut.H02495' => 'egut', 'Migut.I00561' => 'egut', 'Migut.K01015' => 'egut', 'Migut.K01016' => 'egut', 'Migut.L00743' => 'egut', 'Migut.L00744' => 'egut', 'Migut.L00746' => 'egut', 'Migut.L00798' => 'egut', 'Migut.L00799' => 'egut', 'Migut.N02096' => 'egut', 'MSTRG.11259' => 'ama', 'MSTRG.23142' => 'ama', 'MSTRG.2499' => 'ama', 'Nitab4.5_0000003g0730' => 'nta', 'Nitab4.5_0000137g0020' => 'nta', 'Nitab4.5_0000721g0210' => 'nta', 'Nitab4.5_0000723g0050' => 'nta', 'Nitab4.5_0000913g0070' => 'nta', 'Nitab4.5_0001332g0040' => 'nta', 'Nitab4.5_0001771g0050' => 'nta', 'Nitab4.5_0001918g0050' => 'nta', 'Nitab4.5_0002686g0030' => 'nta', 'Nitab4.5_0003156g0020' => 'nta', 'Nitab4.5_0003383g0040' => 'nta', 'Nitab4.5_0003918g0010' => 'nta', 'Nitab4.5_0006760g0010' => 'nta', 'Nn1g05981' => 'nnu', 'Nn1g06288' => 'nnu', 'Nn3g16371' => 'nnu', 'Nn3g16786' => 'nnu', 'Nn4g22232' => 'nnu', 'Oeu005144.1' => 'oeu', 'Oeu005145.1' => 'oeu', 'Oeu011348.1' => 'oeu', 'Oeu016415.1' => 'oeu', 'Oeu023501.1' => 'oeu', 'Oeu044473.1' => 'oeu', 'Oeu048892.2' => 'oeu', 'Os01g0549200' => 'osa', 'Os02g0469300' => 'osa', 'Os04g0311100' => 'osa', 'Os06g0474900' => 'osa', 'Os10g0181700' => 'osa', 'Os11g0454800' => 'osa', 'Peaxi162Scf00037g00714' => 'pax', 'Peaxi162Scf00084g01217' => 'pax', 'Peaxi162Scf00257g00217' => 'pax', 'Peaxi162Scf00516g00215' => 'pax', 'Peaxi162Scf00689g00123' => 'pax', 'PGR044G2719' => 'pgr', 'PGR083G1360' => 'pgr', 'PGR102G2849' => 'pgr', 'PGR119G2534' => 'pgr', 'PGSC0003DMG400003538' => 'stu', 'PGSC0003DMG400028138' => 'stu', 'PGSC0003DMG400031732' => 'stu', 'PGSC0003DMG400038165' => 'stu', 'Phvul.002G284600' => 'pvu', 'Phvul.003G258200' => 'pvu', 'Phvul.009G176500' => 'pvu', 'Potri.003G167201' => 'ptr', 'Potri.005G118400' => 'ptr', 'Potri.012G089000' => 'ptr', 'Potri.012G102800' => 'ptr', 'Potri.015G079400' => 'ptr', 'Potri.015G100900' => 'ptr', 'Pp3c14_9810' => 'ppa', 'Pp3c15_10450' => 'ppa', 'Pp3c20_19150' => 'ppa', 'Pp3c23_12740' => 'ppa', 'Pp3c23_6310' => 'ppa', 'Pp3c24_3720' => 'ppa', 'Pp3c27_2580' => 'ppa', 'Pp3c9_8990' => 'ppa', 'PRCOL_00002854' => 'pco', 'Prupe.1G221200' => 'ppe', 'Prupe.3G289000' => 'ppe', 'Prupe.5G147000' => 'ppe', 'Prupe.6G157300' => 'ppe', 'Prupe.7G163400' => 'ppe', 'Psat0s2177g0040' => 'psa', 'Psat3g174760' => 'psa', 'Psat3g192160' => 'psa', 'Psat4g058520' => 'psa', 'Psat4g096840' => 'psa', 'Psat7g037320' => 'psa', 'PSO017G1274' => 'pso', 'PSO017G5166' => 'pso', 'PSO063G4558' => 'pso', 'PSO170G4458' => 'pso', 'PSO170G5005' => 'pso', 'PSO210G6156' => 'pso', 'PSO210G6635' => 'pso', 'PSO210G7397' => 'pso', 'PSO210G7700' => 'pso', 'PSO455G0035' => 'pso', 'PSO455G0180' => 'pso', 'PSO478G4515' => 'pso', 'PSO832G1305' => 'pso', 'PSO832G3489' => 'pso', 'QL02p075247' => 'qlo', 'QL03p051148' => 'qlo', 'QL05p010313' => 'qlo', 'QL06p034627' => 'qlo', 'QL10p001889' => 'qlo', 'QL10p010846' => 'qlo', 'RcHm_v2.0_Chr1g0350621' => 'rch', 'RcHm_v2.0_Chr1g0350641' => 'rch', 'RcHm_v2.0_Chr2g0092891' => 'rch', 'RcHm_v2.0_Chr2g0100251' => 'rch', 'RcHm_v2.0_Chr2g0158661' => 'rch', 'RcHm_v2.0_Chr2g0172741' => 'rch', 'RcHm_v2.0_Chr4g0429571' => 'rch', 'RcHm_v2.0_Chr5g0042471' => 'rch', 'RcHm_v2.0_Chr7g0189451' => 'rch', 'Rhsim08G0052000' => 'rsi', 'Rhsim08G0174400' => 'rsi', 'Rhsim08G0193200' => 'rsi', 'Rhsim10G0214800' => 'rsi', 'Rhsim10G0214900' => 'rsi', 'Rhsim10G0215000' => 'rsi', 'Rhsim12G0022900' => 'rsi', 'Rhsim12G0177500' => 'rsi', 'Rhsim12G0177700' => 'rsi', 'Sabra03G0122600' => 'sbr', 'Sabra05G0097400' => 'sbr', 'Sabra12G0064100' => 'sbr', 'Sabra15G0121300' => 'sbr', 'SalBow2G0642' => 'sbo', 'SalBow5G2667' => 'sbo', 'SalBow5G4873' => 'sbo', 'SalBow8G2395' => 'sbo', 'Sc03g0003290' => 'sci', 'Sc10g0010130' => 'sci', 'Sc22g0003650' => 'sci', 'Sed0001603' => 'sed', 'Sed0004259' => 'sed', 'Sed0006789' => 'sed', 'Sed0011838' => 'sed', 'Sed0012964' => 'sed', 'Sed0016383' => 'sed', 'Sed0019010' => 'sed', 'Sed0020188' => 'sed', 'SEGI_04702' => 'sgi', 'SEGI_17231' => 'sgi', 'SEGI_18877' => 'sgi', 'SEGI_25196' => 'sgi', 'SEGI_25515' => 'sgi', 'SEGI_28445' => 'sgi', 'SEGI_37452' => 'sgi', 'SGA_v2.0_scaffold188G40336' => 'sas', 'SGA_v2.0_scaffold228G43247' => 'sas', 'SGA_v2.0_scaffold280G46853' => 'sas', 'SGA_v2.0_scaffold34G13808' => 'sas', 'SGA_v2.0_scaffold40G15576' => 'sas', 'SGA_v2.0_scaffold611G53188' => 'sas', 'SGA_v2.0_scaffold78G25461' => 'sas', 'SGA_v2.0_scaffold90G27888' => 'sas', 'SHI08601' => 'shi', 'SHI08606' => 'shi', 'SHI17117' => 'shi', 'SHI17119' => 'shi', 'SMO118G0201' => 'smo', 'SMO169G0247' => 'smo', 'SMO176G0006' => 'smo', 'SMO176G0015' => 'smo', 'SMO202G0006' => 'smo', 'SMO240G0050' => 'smo', 'SMO286G0009' => 'smo', 'SMO338G0033' => 'smo', 'SMO356G0533' => 'smo', 'SMO364G0382' => 'smo', 'SMO367G0166' => 'smo', 'SMO367G1098' => 'smo', 'Solyc01g009920.3' => 'sly', 'Solyc01g099300.3' => 'sly', 'Solyc02g084700.3' => 'sly', 'Solyc03g097520.3' => 'sly', 'Solyc06g071580.3' => 'sly', 'Solyc10g081760.3' => 'sly', 'Sopen01g005480' => 'spe', 'Sopen01g042850' => 'spe', 'Sopen02g029370' => 'spe', 'Sopen03g028280' => 'spe', 'Sopen06g027870' => 'spe', 'Sopen10g032270' => 'spe', 'Sp5g18180' => 'spa', 'Sp6g12880' => 'spa', 'Sp6g30850' => 'spa', 'Sp7g22960' => 'spa', 'Sp7g34010' => 'spa', 'SpUn1326_0010' => 'spa', 'TAR371G0242' => 'tar', 'TAR622G0638' => 'tar', 'TAR628G1548' => 'tar', 'TAR629G1079' => 'tar', 'TAR629G3413' => 'tar', 'THA.LOC104804249' => 'tha', 'THA.LOC104808315' => 'tha', 'THA.LOC104809238' => 'tha', 'THA.LOC104825484' => 'tha', 'Thecc.01G025500' => 'tca', 'Thecc.03G015800' => 'tca', 'Thecc.03G018000' => 'tca', 'Thecc.03G134800' => 'tca', 'Thecc.04G014700' => 'tca', 'Thhalv10006991m.g' => 'esa', 'Thhalv10012707m.g' => 'esa', 'Thhalv10015739m.g' => 'esa', 'Thhalv10024553m.g' => 'esa', 'Thhalv10024673m.g' => 'esa', 'Thhalv10029187m.g' => 'esa', 'TPR.G12971' => 'tpr', 'TPR.G29396' => 'tpr', 'TPR.G33376' => 'tpr', 'TPR.G35508' => 'tpr', 'TPR.G35516' => 'tpr', 'TPR.G37317' => 'tpr', 'TPR.G37389' => 'tpr', 'TPR.G37523' => 'tpr', 'TPR.G559' => 'tpr', 'TWI14G0070' => 'twi', 'TWI14G0729' => 'twi', 'TWI18G0596' => 'twi', 'TWI39G0780' => 'twi', 'TWI39G0850' => 'twi', 'TWI73G1052' => 'twi', 'unitig_52.g17485' => 'ugi', 'unitig_61.g26355' => 'ugi', 'vmacro01040' => 'vma', 'vmacro16731' => 'vma', 'vmacro18270' => 'vma', 'vmacro19142' => 'vma', 'vmacro19407' => 'vma', 'vmacro19408' => 'vma', 'vmacro21899' => 'vma', 'vmacro21900' => 'vma', 'vmacro21901' => 'vma', 'VMungo0251G0490' => 'vmu', 'VMungo0251G1748' => 'vmu', 'VMungo1309G0421' => 'vmu', 'Zm00001eb086500' => 'zma', 'Zm00001eb150680' => 'zma', 'Zm00001eb162330' => 'zma', 'Zm00001eb203130' => 'zma', 'Zm00001eb369480' => 'zma', 'Zm00001eb382340' => 'zma', 'Zm00001eb416360' => 'zma' ) $gf_id = 'HOM05D000902' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000902' ) $data_identifier = 'HOM05D000902' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 13, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 10, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 6, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 9, 'hma' => (int) 12, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 4, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 6, 'ppa' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 6, 'rch' => (int) 9, 'rsi' => (int) 9, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 12, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 3, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416360' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000902', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '663', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02470' => 'bna', 'A01p16260' => 'bna', 'A02p01680' => 'bna', 'A03p16600' => 'bna', 'A03p55660' => 'bna', 'A03p64160' => 'bna', 'A03p64170' => 'bna', 'A08p31900' => 'bna', 'A09p59530' => 'bna', 'A10p08230' => 'bna', 'A10p25090' => 'bna', 'Aa31LG3G7100' => 'aar', 'Aa31LG3G7110' => 'aar', 'Aa31LG6G13160' => 'aar', 'Aa31LG7G10770' => 'aar', 'Aa31LG7G3830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2723' => 'aag', 'Actinidia08045' => 'ach', 'Actinidia08888' => 'ach', 'Actinidia18333' => 'ach', 'Actinidia19334' => 'ach', 'Actinidia25552' => 'ach', 'Actinidia26089' => 'ach', 'Actinidia30615' => 'ach', 'Actinidia30616' => 'ach', 'Actinidia33083' => 'ach', 'Actinidia35762' => 'ach', 'Ah.02g110620' => 'amhyb', 'Ah.11g046390' => 'amhyb', 'AL1G31670' => 'aly', 'AL6G23730' => 'aly', 'AL7G14740' => 'aly', 'AL7G14750' => 'aly', 'AL7G14760' => 'aly', 'AL7G28220' => 'aly', 'AL8G24940' => 'aly', 'Aqoxy3G01665' => 'aox', 'Aqoxy3G02853' => 'aox', 'Aqoxy5G01513' => 'aox', 'Aqoxy5G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8SKA4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ75LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKDA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0LJZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7REX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZP4YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWX7I5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2QKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS0L9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPCD8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q161UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC7XCF' => 'arhy', 'AT1G19100' => 'ath', 'AT4G24970' => 'ath', 'AT4G36270' => 'ath', 'AT4G36280' => 'ath', 'AT4G36290' => 'ath', 'AT5G13130' => 'ath', 'AT5G50780' => 'ath', 'ATR0582G266' => 'atr', 'ATR0661G195' => 'atr', 'ATR1152G031' => 'atr', 'Atru.chr11.2382' => 'acertr', 'Atru.chr12.2337' => 'acertr', 'Atru.chr3.744' => 'acertr', 'Atru.chr6.1870' => 'acertr', 'Atru.chr9.2515' => 'acertr', 'AUR62004120' => 'cqu', 'AUR62005667' => 'cqu', 'AUR62007634' => 'cqu', 'AUR62008186' => 'cqu', 'AUR62008187' => 'cqu', 'AUR62008188' => 'cqu', 'AUR62027954' => 'cqu', 'AUR62028766' => 'cqu', 'AUR62028767' => 'cqu', 'AUR62028768' => 'cqu', 'AUR62028886' => 'cqu', 'AUR62029563' => 'cqu', 'AUR62038832' => 'cqu', 'BcaB01g04149' => 'bca', 'BcaB03g12940' => 'bca', 'BcaB03g13090' => 'bca', 'BcaB03g14466' => 'bca', 'BcaB05g24035' => 'bca', 'BcaC01g06050' => 'bca', 'BcaC04g19148' => 'bca', 'BcaC04g20761' => 'bca', 'BcaC06g32845' => 'bca', 'BcaC07g41274' => 'bca', 'BcaC09g50827' => 'bca', 'BcaNung00741' => 'bca', 'BcaNung00742' => 'bca', 'BcaNung01859' => 'bca', 'BcaNung03985' => 'bca', 'BcaNung03989' => 'bca', 'BcaNung05661' => 'bca', 'BolC1t00257H' => 'bol', 'BolC1t01956H' => 'bol', 'BolC2t06534H' => 'bol', 'BolC3t14334H' => 'bol', 'BolC5t30451H' => 'bol', 'BolC7t45880H' => 'bol', 'BolC7t46586H' => 'bol', 'BolC8t49301H' => 'bol', 'BolC8t51837H' => 'bol', 'BolC9t56822H' => 'bol', 'BolC9t59235H' => 'bol', 'BraA01t00234Z' => 'bra', 'BraA01t01563Z' => 'bra', 'BraA02t05147Z' => 'bra', 'BraA03t10947Z' => 'bra', 'BraA03t14633Z' => 'bra', 'BraA08t35112Z' => 'bra', 'BraA09t41330Z' => 'bra', 'BraA10t44570Z' => 'bra', 'C01p02670' => 'bna', 'C01p20260' => 'bna', 'C02p05890' => 'bna', 'C03p19530' => 'bna', 'C05p17470' => 'bna', 'C07p53900' => 'bna', 'C07p61630' => 'bna', 'C08p16800' => 'bna', 'C08p42810' => 'bna', 'C09p39480' => 'bna', 'C09p63980' => 'bna', 'CAN.G1001.7' => 'can', 'CAN.G1034.55' => 'can', 'CAN.G143.7' => 'can', 'CAN.G3340.1' => 'can', 'CAN.G358.19' => 'can', 'CAN.G373.2' => 'can', 'CAN.G674.16' => 'can', 'CAN.G674.17' => 'can', 'CAN.G674.18' => 'can', 'CAN.G732.2' => 'can', 'CAN.G732.3' => 'can', 'CAN.G993.39' => 'can', 'CANSAT01G2052' => 'cansat', 'CANSAT80G0070' => 'cansat', 'CANSAT80G0483' => 'cansat', 'CANSAT80G0625' => 'cansat', 'CARHR019690' => 'chi', 'CARHR080280' => 'chi', 'CARHR152750' => 'chi', 'CARHR152760' => 'chi', 'CARHR152770' => 'chi', 'CARHR200340' => 'chi', 'CARHR232370' => 'chi', 'CARHR244670' => 'chi', 'CARHR244680' => 'chi', 'CARHR257520' => 'chi', 'Carub.0001s1872' => 'cru', 'Carub.0006s1130' => 'cru', 'Carub.0007s0396' => 'cru', 'Carub.0007s0397' => 'cru', 'Carub.0007s1608' => 'cru', 'Carub.0008s1068' => 'cru', 'Carub.0008s1077' => 'cru', 'Ca_16158_v3' => 'car', 'Ca_17571_v3' => 'car', 'Ca_21936_v3' => 'car', 'Ca_22350_v3' => 'car', 'CBR_g22445' => 'cbr', 'CBR_g26290' => 'cbr', 'Cc04_g09610' => 'ccan', 'Cc04_g12280' => 'ccan', 'Cc07_g10230' => 'ccan', 'CDE02G0093' => 'cde', 'CDE02G0701' => 'cde', 'CDE04G1050' => 'cde', 'CDE05G1833' => 'cde', 'CDE05G3058' => 'cde', 'CDE05G3380' => 'cde', 'CDE06G0536' => 'cde', 'Cfa006923' => 'cfa', 'Cfa009402' => 'cfa', 'Cfa018751' => 'cfa', 'Cfa019164' => 'cfa', 'Cfa022935' => 'cfa', 'Ciclev10019081m.g' => 'ccl', 'Ciclev10025076m.g' => 'ccl', 'Ciclev10030712m.g' => 'ccl', 'Ciclev10033760m.g' => 'ccl', 'CiPaw.05G105600' => 'cil', 'CiPaw.08G136700' => 'cil', 'CiPaw.11G003900' => 'cil', 'CiPaw.11G023700' => 'cil', 'CiPaw.12G003700' => 'cil', 'ClCG06G017100' => 'cla', 'ClCG06G018110' => 'cla', 'ClCG07G008800' => 'cla', 'ClCG07G015330' => 'cla', 'COL.COLO4_13698' => 'col', 'COL.COLO4_16659' => 'col', 'COL.COLO4_21986' => 'col', 'COL.COLO4_24049' => 'col', 'COL.COLO4_29061' => 'col', 'COL.COLO4_29075' => 'col', 'COL.COLO4_30094' => 'col', 'Cpa.g.c33689' => 'cpa', 'Cpa.g.sc108.39' => 'cpa', 'Cpa.g.sc108.41' => 'cpa', 'Cpa.g.sc1163.1' => 'cpa', 'Cpa.g.sc4.155' => 'cpa', 'Cpa.g.sc6.194' => 'cpa', 'CsaV3_1G000340' => 'csa', 'CsaV3_1G001400' => 'csa', 'CsaV3_4G002220' => 'csa', 'CsaV3_4G005370' => 'csa', 'CSS0007487' => 'camsi', 'CSS0008066' => 'camsi', 'CSS0009120' => 'camsi', 'CSS0015512' => 'camsi', 'CSS0022409' => 'camsi', 'CSS0025358' => 'camsi', 'CSS0044547' => 'camsi', 'DCAR_013057' => 'dca', 'DCAR_015058' => 'dca', 'DCAR_016027' => 'dca', 'DCAR_017327' => 'dca', 'DCAR_020743' => 'dca', 'DCAR_026157' => 'dca', 'DCAR_032339' => 'dca', 'DCAR_032340' => 'dca', 'Dinv11200' => 'din', 'Dinv11201' => 'din', 'Dinv20631' => 'din', 'Dinv23182' => 'din', 'Dinv33466' => 'din', 'Dinv33583' => 'din', 'Dinv38565' => 'din', 'Duzib068G0200' => 'dzi', 'Duzib147G0132' => 'dzi', 'Duzib147G0635' => 'dzi', 'Duzib205G1670' => 'dzi', 'Duzib251G0606' => 'dzi', 'ECA232G3336' => 'eca', 'ECA232G3763' => 'eca', 'ECA232G4845' => 'eca', 'ECA234G1607' => 'eca', 'ECA246G0932' => 'eca', 'ECA247G0781' => 'eca', 'ECA247G1932' => 'eca', 'ECA247G2079' => 'eca', 'ECA247G3338' => 'eca', 'ECA247G4115' => 'eca', 'EL10Ac3g06552' => 'bvu', 'EL10Ac5g10721' => 'bvu', 'EL10Ac5g10722' => 'bvu', 'EL10Ac5g10723' => 'bvu', 'EL10Ac5g11361' => 'bvu', 'EL10Ac6g13553' => 'bvu', 'EL10As8g23872' => 'bvu', 'Eucgr.B00250' => 'egr', 'Eucgr.B00251' => 'egr', 'Eucgr.B03533' => 'egr', 'Eucgr.I02381' => 'egr', 'Eucgr.K02700' => 'egr', 'FAN02G0174' => 'fan', 'FAN02G3146' => 'fan', 'FAN04G1672' => 'fan', 'FAN04G2273' => 'fan', 'FAN05G2791' => 'fan', 'FAN05G4035' => 'fan', 'FAN07G0834' => 'fan', 'FAN08G1198' => 'fan', 'FAN09G4182' => 'fan', 'FAN12G0496' => 'fan', 'FAN13G1027' => 'fan', 'FAN13G2951' => 'fan', 'FAN14G0705' => 'fan', 'FAN14G0720' => 'fan', 'FAN17G0201' => 'fan', 'FAN17G2665' => 'fan', 'FAN18G1456' => 'fan', 'FAN18G1525' => 'fan', 'FAN18G3500' => 'fan', 'FAN28G2670' => 'fan', 'FvH4_1g12391' => 'fve', 'FvH4_4g23220' => 'fve', 'FvH4_5g08810' => 'fve', 'FvH4_5g28960' => 'fve', 'FvH4_6g42820' => 'fve', 'FvH4_6g51110' => 'fve', 'Glyma.02G051802' => 'gma', 'Glyma.04G185300' => 'gma', 'Glyma.05G202900' => 'gma', 'Glyma.08G010300' => 'gma', 'Glyma.16G131900' => 'gma', 'Glyma.17G087900' => 'gma', 'Gohir.A07G048600' => 'ghi', 'Gohir.A11G179000' => 'ghi', 'Gohir.A12G140900' => 'ghi', 'Gohir.A12G140950' => 'ghi', 'Gohir.A12G191700' => 'ghi', 'Gohir.A13G086300' => 'ghi', 'Gohir.D07G052900' => 'ghi', 'Gohir.D11G186600' => 'ghi', 'Gohir.D12G145575' => 'ghi', 'Gohir.D12G145650' => 'ghi', 'Gohir.D12G145725' => 'ghi', 'Gohir.D12G194050' => 'ghi', 'Gohir.D13G091800' => 'ghi', 'Gorai.001G055900' => 'gra', 'Gorai.007G198400' => 'gra', 'Gorai.008G157000' => 'gra', 'Gorai.008G157100' => 'gra', 'Gorai.008G208700' => 'gra', 'Gorai.010G138700' => 'gra', 'GSVIVG01000977001' => 'vvi', 'GSVIVG01007708001' => 'vvi', 'GSVIVG01008587001' => 'vvi', 'GSVIVG01018849001' => 'vvi', 'GSVIVG01032432001' => 'vvi', 'HanXRQChr02g0034131' => 'han', 'HanXRQChr02g0035981' => 'han', 'HanXRQChr02g0035991' => 'han', 'HanXRQChr05g0155611' => 'han', 'HanXRQChr05g0155621' => 'han', 'HanXRQChr08g0236501' => 'han', 'HanXRQChr09g0261321' => 'han', 'HanXRQChr09g0272081' => 'han', 'HanXRQChr10g0310741' => 'han', 'HanXRQChr11g0325591' => 'han', 'HanXRQChr12g0385691' => 'han', 'HanXRQChr13g0387801' => 'han', 'HanXRQChr15g0463011' => 'han', 'Haze_03826' => 'cav', 'Haze_03827' => 'cav', 'Haze_07183' => 'cav', 'Haze_07537' => 'cav', 'Haze_07539' => 'cav', 'Haze_12461' => 'cav', 'Haze_16115' => 'cav', 'Haze_16808' => 'cav', 'Haze_18531' => 'cav', 'Hma1.2p1_0046F.1_g026700' => 'hma', 'Hma1.2p1_0046F.1_g026710' => 'hma', 'Hma1.2p1_0168F.1_g074340' => 'hma', 'Hma1.2p1_0266F.1_g107030' => 'hma', 'Hma1.2p1_0266F.1_g107060' => 'hma', 'Hma1.2p1_0275F.1_g110510' => 'hma', 'Hma1.2p1_0592F.1_g185490' => 'hma', 'Hma1.2p1_0592F.1_g185500' => 'hma', 'Hma1.2p1_0592F.1_g185510' => 'hma', 'Hma1.2p1_0592F.1_g185520' => 'hma', 'Hma1.2p1_0592F.1_g185530' => 'hma', 'Hma1.2p1_0818F.1_g223450' => 'hma', 'HPP92_009708' => 'vpl', 'HPP92_009793' => 'vpl', 'HPP92_009796' => 'vpl', 'HPP92_009797' => 'vpl', 'HPP92_014940' => 'vpl', 'HPP92_014988' => 'vpl', 'Hund02463' => 'sun', 'Hund02760' => 'sun', 'Hund05071' => 'sun', 'Hund10108' => 'sun', 'Hund11204' => 'sun', 'Hund14016' => 'sun', 'Hund16464' => 'sun', 'Lalb_Chr09g0333391' => 'lal', 'Lalb_Chr11g0070461' => 'lal', 'Lalb_Chr12g0201671' => 'lal', 'Lalb_Chr13g0297161' => 'lal', 'Lj1g0002823' => 'lja', 'Lj3C1074T6' => 'lonja', 'Lj4A212T28' => 'lonja', 'Lj4g0005516' => 'lja', 'Lj4g0013705' => 'lja', 'Lj4g0027865' => 'lja', 'Lj5C92G16' => 'lonja', 'Lj5C92T12' => 'lonja', 'Lj7C596T3' => 'lonja', 'Lj9A446G59' => 'lonja', 'Lj9A482G21' => 'lonja', 'Lsat_1_v5_gn_1_28261' => 'lsa', 'Lsat_1_v5_gn_1_28281' => 'lsa', 'Lsat_1_v5_gn_1_32721' => 'lsa', 'Lsat_1_v5_gn_4_151760' => 'lsa', 'Lsat_1_v5_gn_4_2120' => 'lsa', 'Lsat_1_v5_gn_4_75761' => 'lsa', 'Lsat_1_v5_gn_5_10920' => 'lsa', 'Manes.02G099900' => 'mes', 'Manes.11G096200' => 'mes', 'Manes.12G007200' => 'mes', 'Manes.14G048300' => 'mes', 'Manes.17G114700' => 'mes', 'Mapoly0002s0070' => 'mpo', 'Mapoly0029s0099' => 'mpo', 'MBI07_g24742_MAGBIO' => 'mbi', 'MBI10_g27988_MAGBIO' => 'mbi', 'MBI11_g13057_MAGBIO' => 'mbi', 'MD02G1137200' => 'mdo', 'MD06G1137200' => 'mdo', 'MD07G1122300' => 'mdo', 'MD09G1078200' => 'mdo', 'MD13G1123700' => 'mdo', 'MD14G1151900' => 'mdo', 'MD17G1030900' => 'mdo', 'MD17G1068200' => 'mdo', 'MD17G1068600' => 'mdo', 'Medtr3g077540' => 'mtr', 'Medtr4g105530' => 'mtr', 'Medtr8g076580' => 'mtr', 'Medtr8g076590' => 'mtr', 'Medtr8g096410' => 'mtr', 'MELO3C016411.2' => 'cme', 'MELO3C017780.2' => 'cme', 'MELO3C022560.2' => 'cme', 'MELO3C026187.2' => 'cme', 'MELO3C026286.2' => 'cme', 'MELO3C032854.2' => 'cme', 'Migut.H02495' => 'egut', 'Migut.I00561' => 'egut', 'Migut.K01015' => 'egut', 'Migut.K01016' => 'egut', 'Migut.L00743' => 'egut', 'Migut.L00744' => 'egut', 'Migut.L00746' => 'egut', 'Migut.L00798' => 'egut', 'Migut.L00799' => 'egut', 'Migut.N02096' => 'egut', 'MSTRG.11259' => 'ama', 'MSTRG.23142' => 'ama', 'MSTRG.2499' => 'ama', 'Nitab4.5_0000003g0730' => 'nta', 'Nitab4.5_0000137g0020' => 'nta', 'Nitab4.5_0000721g0210' => 'nta', 'Nitab4.5_0000723g0050' => 'nta', 'Nitab4.5_0000913g0070' => 'nta', 'Nitab4.5_0001332g0040' => 'nta', 'Nitab4.5_0001771g0050' => 'nta', 'Nitab4.5_0001918g0050' => 'nta', 'Nitab4.5_0002686g0030' => 'nta', 'Nitab4.5_0003156g0020' => 'nta', 'Nitab4.5_0003383g0040' => 'nta', 'Nitab4.5_0003918g0010' => 'nta', 'Nitab4.5_0006760g0010' => 'nta', 'Nn1g05981' => 'nnu', 'Nn1g06288' => 'nnu', 'Nn3g16371' => 'nnu', 'Nn3g16786' => 'nnu', 'Nn4g22232' => 'nnu', 'Oeu005144.1' => 'oeu', 'Oeu005145.1' => 'oeu', 'Oeu011348.1' => 'oeu', 'Oeu016415.1' => 'oeu', 'Oeu023501.1' => 'oeu', 'Oeu044473.1' => 'oeu', 'Oeu048892.2' => 'oeu', 'Os01g0549200' => 'osa', 'Os02g0469300' => 'osa', 'Os04g0311100' => 'osa', 'Os06g0474900' => 'osa', 'Os10g0181700' => 'osa', 'Os11g0454800' => 'osa', 'Peaxi162Scf00037g00714' => 'pax', 'Peaxi162Scf00084g01217' => 'pax', 'Peaxi162Scf00257g00217' => 'pax', 'Peaxi162Scf00516g00215' => 'pax', 'Peaxi162Scf00689g00123' => 'pax', 'PGR044G2719' => 'pgr', 'PGR083G1360' => 'pgr', 'PGR102G2849' => 'pgr', 'PGR119G2534' => 'pgr', 'PGSC0003DMG400003538' => 'stu', 'PGSC0003DMG400028138' => 'stu', 'PGSC0003DMG400031732' => 'stu', 'PGSC0003DMG400038165' => 'stu', 'Phvul.002G284600' => 'pvu', 'Phvul.003G258200' => 'pvu', 'Phvul.009G176500' => 'pvu', 'Potri.003G167201' => 'ptr', 'Potri.005G118400' => 'ptr', 'Potri.012G089000' => 'ptr', 'Potri.012G102800' => 'ptr', 'Potri.015G079400' => 'ptr', 'Potri.015G100900' => 'ptr', 'Pp3c14_9810' => 'ppa', 'Pp3c15_10450' => 'ppa', 'Pp3c20_19150' => 'ppa', 'Pp3c23_12740' => 'ppa', 'Pp3c23_6310' => 'ppa', 'Pp3c24_3720' => 'ppa', 'Pp3c27_2580' => 'ppa', 'Pp3c9_8990' => 'ppa', 'PRCOL_00002854' => 'pco', 'Prupe.1G221200' => 'ppe', 'Prupe.3G289000' => 'ppe', 'Prupe.5G147000' => 'ppe', 'Prupe.6G157300' => 'ppe', 'Prupe.7G163400' => 'ppe', 'Psat0s2177g0040' => 'psa', 'Psat3g174760' => 'psa', 'Psat3g192160' => 'psa', 'Psat4g058520' => 'psa', 'Psat4g096840' => 'psa', 'Psat7g037320' => 'psa', 'PSO017G1274' => 'pso', 'PSO017G5166' => 'pso', 'PSO063G4558' => 'pso', 'PSO170G4458' => 'pso', 'PSO170G5005' => 'pso', 'PSO210G6156' => 'pso', 'PSO210G6635' => 'pso', 'PSO210G7397' => 'pso', 'PSO210G7700' => 'pso', 'PSO455G0035' => 'pso', 'PSO455G0180' => 'pso', 'PSO478G4515' => 'pso', 'PSO832G1305' => 'pso', 'PSO832G3489' => 'pso', 'QL02p075247' => 'qlo', 'QL03p051148' => 'qlo', 'QL05p010313' => 'qlo', 'QL06p034627' => 'qlo', 'QL10p001889' => 'qlo', 'QL10p010846' => 'qlo', 'RcHm_v2.0_Chr1g0350621' => 'rch', 'RcHm_v2.0_Chr1g0350641' => 'rch', 'RcHm_v2.0_Chr2g0092891' => 'rch', 'RcHm_v2.0_Chr2g0100251' => 'rch', 'RcHm_v2.0_Chr2g0158661' => 'rch', 'RcHm_v2.0_Chr2g0172741' => 'rch', 'RcHm_v2.0_Chr4g0429571' => 'rch', 'RcHm_v2.0_Chr5g0042471' => 'rch', 'RcHm_v2.0_Chr7g0189451' => 'rch', 'Rhsim08G0052000' => 'rsi', 'Rhsim08G0174400' => 'rsi', 'Rhsim08G0193200' => 'rsi', 'Rhsim10G0214800' => 'rsi', 'Rhsim10G0214900' => 'rsi', 'Rhsim10G0215000' => 'rsi', 'Rhsim12G0022900' => 'rsi', 'Rhsim12G0177500' => 'rsi', 'Rhsim12G0177700' => 'rsi', 'Sabra03G0122600' => 'sbr', 'Sabra05G0097400' => 'sbr', 'Sabra12G0064100' => 'sbr', 'Sabra15G0121300' => 'sbr', 'SalBow2G0642' => 'sbo', 'SalBow5G2667' => 'sbo', 'SalBow5G4873' => 'sbo', 'SalBow8G2395' => 'sbo', 'Sc03g0003290' => 'sci', 'Sc10g0010130' => 'sci', 'Sc22g0003650' => 'sci', 'Sed0001603' => 'sed', 'Sed0004259' => 'sed', 'Sed0006789' => 'sed', 'Sed0011838' => 'sed', 'Sed0012964' => 'sed', 'Sed0016383' => 'sed', 'Sed0019010' => 'sed', 'Sed0020188' => 'sed', 'SEGI_04702' => 'sgi', 'SEGI_17231' => 'sgi', 'SEGI_18877' => 'sgi', 'SEGI_25196' => 'sgi', 'SEGI_25515' => 'sgi', 'SEGI_28445' => 'sgi', 'SEGI_37452' => 'sgi', 'SGA_v2.0_scaffold188G40336' => 'sas', 'SGA_v2.0_scaffold228G43247' => 'sas', 'SGA_v2.0_scaffold280G46853' => 'sas', 'SGA_v2.0_scaffold34G13808' => 'sas', 'SGA_v2.0_scaffold40G15576' => 'sas', 'SGA_v2.0_scaffold611G53188' => 'sas', 'SGA_v2.0_scaffold78G25461' => 'sas', 'SGA_v2.0_scaffold90G27888' => 'sas', 'SHI08601' => 'shi', 'SHI08606' => 'shi', 'SHI17117' => 'shi', 'SHI17119' => 'shi', 'SMO118G0201' => 'smo', 'SMO169G0247' => 'smo', 'SMO176G0006' => 'smo', 'SMO176G0015' => 'smo', 'SMO202G0006' => 'smo', 'SMO240G0050' => 'smo', 'SMO286G0009' => 'smo', 'SMO338G0033' => 'smo', 'SMO356G0533' => 'smo', 'SMO364G0382' => 'smo', 'SMO367G0166' => 'smo', 'SMO367G1098' => 'smo', 'Solyc01g009920.3' => 'sly', 'Solyc01g099300.3' => 'sly', 'Solyc02g084700.3' => 'sly', 'Solyc03g097520.3' => 'sly', 'Solyc06g071580.3' => 'sly', 'Solyc10g081760.3' => 'sly', 'Sopen01g005480' => 'spe', 'Sopen01g042850' => 'spe', 'Sopen02g029370' => 'spe', 'Sopen03g028280' => 'spe', 'Sopen06g027870' => 'spe', 'Sopen10g032270' => 'spe', 'Sp5g18180' => 'spa', 'Sp6g12880' => 'spa', 'Sp6g30850' => 'spa', 'Sp7g22960' => 'spa', 'Sp7g34010' => 'spa', 'SpUn1326_0010' => 'spa', 'TAR371G0242' => 'tar', 'TAR622G0638' => 'tar', 'TAR628G1548' => 'tar', 'TAR629G1079' => 'tar', 'TAR629G3413' => 'tar', 'THA.LOC104804249' => 'tha', 'THA.LOC104808315' => 'tha', 'THA.LOC104809238' => 'tha', 'THA.LOC104825484' => 'tha', 'Thecc.01G025500' => 'tca', 'Thecc.03G015800' => 'tca', 'Thecc.03G018000' => 'tca', 'Thecc.03G134800' => 'tca', 'Thecc.04G014700' => 'tca', 'Thhalv10006991m.g' => 'esa', 'Thhalv10012707m.g' => 'esa', 'Thhalv10015739m.g' => 'esa', 'Thhalv10024553m.g' => 'esa', 'Thhalv10024673m.g' => 'esa', 'Thhalv10029187m.g' => 'esa', 'TPR.G12971' => 'tpr', 'TPR.G29396' => 'tpr', 'TPR.G33376' => 'tpr', 'TPR.G35508' => 'tpr', 'TPR.G35516' => 'tpr', 'TPR.G37317' => 'tpr', 'TPR.G37389' => 'tpr', 'TPR.G37523' => 'tpr', 'TPR.G559' => 'tpr', 'TWI14G0070' => 'twi', 'TWI14G0729' => 'twi', 'TWI18G0596' => 'twi', 'TWI39G0780' => 'twi', 'TWI39G0850' => 'twi', 'TWI73G1052' => 'twi', 'unitig_52.g17485' => 'ugi', 'unitig_61.g26355' => 'ugi', 'vmacro01040' => 'vma', 'vmacro16731' => 'vma', 'vmacro18270' => 'vma', 'vmacro19142' => 'vma', 'vmacro19407' => 'vma', 'vmacro19408' => 'vma', 'vmacro21899' => 'vma', 'vmacro21900' => 'vma', 'vmacro21901' => 'vma', 'VMungo0251G0490' => 'vmu', 'VMungo0251G1748' => 'vmu', 'VMungo1309G0421' => 'vmu', 'Zm00001eb086500' => 'zma', 'Zm00001eb150680' => 'zma', 'Zm00001eb162330' => 'zma', 'Zm00001eb203130' => 'zma', 'Zm00001eb369480' => 'zma', 'Zm00001eb382340' => 'zma', 'Zm00001eb416360' => 'zma' ), 'gf_id' => 'HOM05D000902', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000902' ), 'data_identifier' => 'HOM05D000902', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000902', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '663', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02470' => 'bna', 'A01p16260' => 'bna', 'A02p01680' => 'bna', 'A03p16600' => 'bna', 'A03p55660' => 'bna', 'A03p64160' => 'bna', 'A03p64170' => 'bna', 'A08p31900' => 'bna', 'A09p59530' => 'bna', 'A10p08230' => 'bna', 'A10p25090' => 'bna', 'Aa31LG3G7100' => 'aar', 'Aa31LG3G7110' => 'aar', 'Aa31LG6G13160' => 'aar', 'Aa31LG7G10770' => 'aar', 'Aa31LG7G3830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2723' => 'aag', 'Actinidia08045' => 'ach', 'Actinidia08888' => 'ach', 'Actinidia18333' => 'ach', 'Actinidia19334' => 'ach', 'Actinidia25552' => 'ach', 'Actinidia26089' => 'ach', 'Actinidia30615' => 'ach', 'Actinidia30616' => 'ach', 'Actinidia33083' => 'ach', 'Actinidia35762' => 'ach', 'Ah.02g110620' => 'amhyb', 'Ah.11g046390' => 'amhyb', 'AL1G31670' => 'aly', 'AL6G23730' => 'aly', 'AL7G14740' => 'aly', 'AL7G14750' => 'aly', 'AL7G14760' => 'aly', 'AL7G28220' => 'aly', 'AL8G24940' => 'aly', 'Aqoxy3G01665' => 'aox', 'Aqoxy3G02853' => 'aox', 'Aqoxy5G01513' => 'aox', 'Aqoxy5G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8SKA4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ75LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKDA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0LJZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7REX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZP4YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWX7I5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2QKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS0L9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPCD8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q161UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC7XCF' => 'arhy', 'AT1G19100' => 'ath', 'AT4G24970' => 'ath', 'AT4G36270' => 'ath', 'AT4G36280' => 'ath', 'AT4G36290' => 'ath', 'AT5G13130' => 'ath', 'AT5G50780' => 'ath', 'ATR0582G266' => 'atr', 'ATR0661G195' => 'atr', 'ATR1152G031' => 'atr', 'Atru.chr11.2382' => 'acertr', 'Atru.chr12.2337' => 'acertr', 'Atru.chr3.744' => 'acertr', 'Atru.chr6.1870' => 'acertr', 'Atru.chr9.2515' => 'acertr', 'AUR62004120' => 'cqu', 'AUR62005667' => 'cqu', 'AUR62007634' => 'cqu', 'AUR62008186' => 'cqu', 'AUR62008187' => 'cqu', 'AUR62008188' => 'cqu', 'AUR62027954' => 'cqu', 'AUR62028766' => 'cqu', 'AUR62028767' => 'cqu', 'AUR62028768' => 'cqu', 'AUR62028886' => 'cqu', 'AUR62029563' => 'cqu', 'AUR62038832' => 'cqu', 'BcaB01g04149' => 'bca', 'BcaB03g12940' => 'bca', 'BcaB03g13090' => 'bca', 'BcaB03g14466' => 'bca', 'BcaB05g24035' => 'bca', 'BcaC01g06050' => 'bca', 'BcaC04g19148' => 'bca', 'BcaC04g20761' => 'bca', 'BcaC06g32845' => 'bca', 'BcaC07g41274' => 'bca', 'BcaC09g50827' => 'bca', 'BcaNung00741' => 'bca', 'BcaNung00742' => 'bca', 'BcaNung01859' => 'bca', 'BcaNung03985' => 'bca', 'BcaNung03989' => 'bca', 'BcaNung05661' => 'bca', 'BolC1t00257H' => 'bol', 'BolC1t01956H' => 'bol', 'BolC2t06534H' => 'bol', 'BolC3t14334H' => 'bol', 'BolC5t30451H' => 'bol', 'BolC7t45880H' => 'bol', 'BolC7t46586H' => 'bol', 'BolC8t49301H' => 'bol', 'BolC8t51837H' => 'bol', 'BolC9t56822H' => 'bol', 'BolC9t59235H' => 'bol', 'BraA01t00234Z' => 'bra', 'BraA01t01563Z' => 'bra', 'BraA02t05147Z' => 'bra', 'BraA03t10947Z' => 'bra', 'BraA03t14633Z' => 'bra', 'BraA08t35112Z' => 'bra', 'BraA09t41330Z' => 'bra', 'BraA10t44570Z' => 'bra', 'C01p02670' => 'bna', 'C01p20260' => 'bna', 'C02p05890' => 'bna', 'C03p19530' => 'bna', 'C05p17470' => 'bna', 'C07p53900' => 'bna', 'C07p61630' => 'bna', 'C08p16800' => 'bna', 'C08p42810' => 'bna', 'C09p39480' => 'bna', 'C09p63980' => 'bna', 'CAN.G1001.7' => 'can', 'CAN.G1034.55' => 'can', 'CAN.G143.7' => 'can', 'CAN.G3340.1' => 'can', 'CAN.G358.19' => 'can', 'CAN.G373.2' => 'can', 'CAN.G674.16' => 'can', 'CAN.G674.17' => 'can', 'CAN.G674.18' => 'can', 'CAN.G732.2' => 'can', 'CAN.G732.3' => 'can', 'CAN.G993.39' => 'can', 'CANSAT01G2052' => 'cansat', 'CANSAT80G0070' => 'cansat', 'CANSAT80G0483' => 'cansat', 'CANSAT80G0625' => 'cansat', 'CARHR019690' => 'chi', 'CARHR080280' => 'chi', 'CARHR152750' => 'chi', 'CARHR152760' => 'chi', 'CARHR152770' => 'chi', 'CARHR200340' => 'chi', 'CARHR232370' => 'chi', 'CARHR244670' => 'chi', 'CARHR244680' => 'chi', 'CARHR257520' => 'chi', 'Carub.0001s1872' => 'cru', 'Carub.0006s1130' => 'cru', 'Carub.0007s0396' => 'cru', 'Carub.0007s0397' => 'cru', 'Carub.0007s1608' => 'cru', 'Carub.0008s1068' => 'cru', 'Carub.0008s1077' => 'cru', 'Ca_16158_v3' => 'car', 'Ca_17571_v3' => 'car', 'Ca_21936_v3' => 'car', 'Ca_22350_v3' => 'car', 'CBR_g22445' => 'cbr', 'CBR_g26290' => 'cbr', 'Cc04_g09610' => 'ccan', 'Cc04_g12280' => 'ccan', 'Cc07_g10230' => 'ccan', 'CDE02G0093' => 'cde', 'CDE02G0701' => 'cde', 'CDE04G1050' => 'cde', 'CDE05G1833' => 'cde', 'CDE05G3058' => 'cde', 'CDE05G3380' => 'cde', 'CDE06G0536' => 'cde', 'Cfa006923' => 'cfa', 'Cfa009402' => 'cfa', 'Cfa018751' => 'cfa', 'Cfa019164' => 'cfa', 'Cfa022935' => 'cfa', 'Ciclev10019081m.g' => 'ccl', 'Ciclev10025076m.g' => 'ccl', 'Ciclev10030712m.g' => 'ccl', 'Ciclev10033760m.g' => 'ccl', 'CiPaw.05G105600' => 'cil', 'CiPaw.08G136700' => 'cil', 'CiPaw.11G003900' => 'cil', 'CiPaw.11G023700' => 'cil', 'CiPaw.12G003700' => 'cil', 'ClCG06G017100' => 'cla', 'ClCG06G018110' => 'cla', 'ClCG07G008800' => 'cla', 'ClCG07G015330' => 'cla', 'COL.COLO4_13698' => 'col', 'COL.COLO4_16659' => 'col', 'COL.COLO4_21986' => 'col', 'COL.COLO4_24049' => 'col', 'COL.COLO4_29061' => 'col', 'COL.COLO4_29075' => 'col', 'COL.COLO4_30094' => 'col', 'Cpa.g.c33689' => 'cpa', 'Cpa.g.sc108.39' => 'cpa', 'Cpa.g.sc108.41' => 'cpa', 'Cpa.g.sc1163.1' => 'cpa', 'Cpa.g.sc4.155' => 'cpa', 'Cpa.g.sc6.194' => 'cpa', 'CsaV3_1G000340' => 'csa', 'CsaV3_1G001400' => 'csa', 'CsaV3_4G002220' => 'csa', 'CsaV3_4G005370' => 'csa', 'CSS0007487' => 'camsi', 'CSS0008066' => 'camsi', 'CSS0009120' => 'camsi', 'CSS0015512' => 'camsi', 'CSS0022409' => 'camsi', 'CSS0025358' => 'camsi', 'CSS0044547' => 'camsi', 'DCAR_013057' => 'dca', 'DCAR_015058' => 'dca', 'DCAR_016027' => 'dca', 'DCAR_017327' => 'dca', 'DCAR_020743' => 'dca', 'DCAR_026157' => 'dca', 'DCAR_032339' => 'dca', 'DCAR_032340' => 'dca', 'Dinv11200' => 'din', 'Dinv11201' => 'din', 'Dinv20631' => 'din', 'Dinv23182' => 'din', 'Dinv33466' => 'din', 'Dinv33583' => 'din', 'Dinv38565' => 'din', 'Duzib068G0200' => 'dzi', 'Duzib147G0132' => 'dzi', 'Duzib147G0635' => 'dzi', 'Duzib205G1670' => 'dzi', 'Duzib251G0606' => 'dzi', 'ECA232G3336' => 'eca', 'ECA232G3763' => 'eca', 'ECA232G4845' => 'eca', 'ECA234G1607' => 'eca', 'ECA246G0932' => 'eca', 'ECA247G0781' => 'eca', 'ECA247G1932' => 'eca', 'ECA247G2079' => 'eca', 'ECA247G3338' => 'eca', 'ECA247G4115' => 'eca', 'EL10Ac3g06552' => 'bvu', 'EL10Ac5g10721' => 'bvu', 'EL10Ac5g10722' => 'bvu', 'EL10Ac5g10723' => 'bvu', 'EL10Ac5g11361' => 'bvu', 'EL10Ac6g13553' => 'bvu', 'EL10As8g23872' => 'bvu', 'Eucgr.B00250' => 'egr', 'Eucgr.B00251' => 'egr', 'Eucgr.B03533' => 'egr', 'Eucgr.I02381' => 'egr', 'Eucgr.K02700' => 'egr', 'FAN02G0174' => 'fan', 'FAN02G3146' => 'fan', 'FAN04G1672' => 'fan', 'FAN04G2273' => 'fan', 'FAN05G2791' => 'fan', 'FAN05G4035' => 'fan', 'FAN07G0834' => 'fan', 'FAN08G1198' => 'fan', 'FAN09G4182' => 'fan', 'FAN12G0496' => 'fan', 'FAN13G1027' => 'fan', 'FAN13G2951' => 'fan', 'FAN14G0705' => 'fan', 'FAN14G0720' => 'fan', 'FAN17G0201' => 'fan', 'FAN17G2665' => 'fan', 'FAN18G1456' => 'fan', 'FAN18G1525' => 'fan', 'FAN18G3500' => 'fan', 'FAN28G2670' => 'fan', 'FvH4_1g12391' => 'fve', 'FvH4_4g23220' => 'fve', 'FvH4_5g08810' => 'fve', 'FvH4_5g28960' => 'fve', 'FvH4_6g42820' => 'fve', 'FvH4_6g51110' => 'fve', 'Glyma.02G051802' => 'gma', 'Glyma.04G185300' => 'gma', 'Glyma.05G202900' => 'gma', 'Glyma.08G010300' => 'gma', 'Glyma.16G131900' => 'gma', 'Glyma.17G087900' => 'gma', 'Gohir.A07G048600' => 'ghi', 'Gohir.A11G179000' => 'ghi', 'Gohir.A12G140900' => 'ghi', 'Gohir.A12G140950' => 'ghi', 'Gohir.A12G191700' => 'ghi', 'Gohir.A13G086300' => 'ghi', 'Gohir.D07G052900' => 'ghi', 'Gohir.D11G186600' => 'ghi', 'Gohir.D12G145575' => 'ghi', 'Gohir.D12G145650' => 'ghi', 'Gohir.D12G145725' => 'ghi', 'Gohir.D12G194050' => 'ghi', 'Gohir.D13G091800' => 'ghi', 'Gorai.001G055900' => 'gra', 'Gorai.007G198400' => 'gra', 'Gorai.008G157000' => 'gra', 'Gorai.008G157100' => 'gra', 'Gorai.008G208700' => 'gra', 'Gorai.010G138700' => 'gra', 'GSVIVG01000977001' => 'vvi', 'GSVIVG01007708001' => 'vvi', 'GSVIVG01008587001' => 'vvi', 'GSVIVG01018849001' => 'vvi', 'GSVIVG01032432001' => 'vvi', 'HanXRQChr02g0034131' => 'han', 'HanXRQChr02g0035981' => 'han', 'HanXRQChr02g0035991' => 'han', 'HanXRQChr05g0155611' => 'han', 'HanXRQChr05g0155621' => 'han', 'HanXRQChr08g0236501' => 'han', 'HanXRQChr09g0261321' => 'han', 'HanXRQChr09g0272081' => 'han', 'HanXRQChr10g0310741' => 'han', 'HanXRQChr11g0325591' => 'han', 'HanXRQChr12g0385691' => 'han', 'HanXRQChr13g0387801' => 'han', 'HanXRQChr15g0463011' => 'han', 'Haze_03826' => 'cav', 'Haze_03827' => 'cav', 'Haze_07183' => 'cav', 'Haze_07537' => 'cav', 'Haze_07539' => 'cav', 'Haze_12461' => 'cav', 'Haze_16115' => 'cav', 'Haze_16808' => 'cav', 'Haze_18531' => 'cav', 'Hma1.2p1_0046F.1_g026700' => 'hma', 'Hma1.2p1_0046F.1_g026710' => 'hma', 'Hma1.2p1_0168F.1_g074340' => 'hma', 'Hma1.2p1_0266F.1_g107030' => 'hma', 'Hma1.2p1_0266F.1_g107060' => 'hma', 'Hma1.2p1_0275F.1_g110510' => 'hma', 'Hma1.2p1_0592F.1_g185490' => 'hma', 'Hma1.2p1_0592F.1_g185500' => 'hma', 'Hma1.2p1_0592F.1_g185510' => 'hma', 'Hma1.2p1_0592F.1_g185520' => 'hma', 'Hma1.2p1_0592F.1_g185530' => 'hma', 'Hma1.2p1_0818F.1_g223450' => 'hma', 'HPP92_009708' => 'vpl', 'HPP92_009793' => 'vpl', 'HPP92_009796' => 'vpl', 'HPP92_009797' => 'vpl', 'HPP92_014940' => 'vpl', 'HPP92_014988' => 'vpl', 'Hund02463' => 'sun', 'Hund02760' => 'sun', 'Hund05071' => 'sun', 'Hund10108' => 'sun', 'Hund11204' => 'sun', 'Hund14016' => 'sun', 'Hund16464' => 'sun', 'Lalb_Chr09g0333391' => 'lal', 'Lalb_Chr11g0070461' => 'lal', 'Lalb_Chr12g0201671' => 'lal', 'Lalb_Chr13g0297161' => 'lal', 'Lj1g0002823' => 'lja', 'Lj3C1074T6' => 'lonja', 'Lj4A212T28' => 'lonja', 'Lj4g0005516' => 'lja', 'Lj4g0013705' => 'lja', 'Lj4g0027865' => 'lja', 'Lj5C92G16' => 'lonja', 'Lj5C92T12' => 'lonja', 'Lj7C596T3' => 'lonja', 'Lj9A446G59' => 'lonja', 'Lj9A482G21' => 'lonja', 'Lsat_1_v5_gn_1_28261' => 'lsa', 'Lsat_1_v5_gn_1_28281' => 'lsa', 'Lsat_1_v5_gn_1_32721' => 'lsa', 'Lsat_1_v5_gn_4_151760' => 'lsa', 'Lsat_1_v5_gn_4_2120' => 'lsa', 'Lsat_1_v5_gn_4_75761' => 'lsa', 'Lsat_1_v5_gn_5_10920' => 'lsa', 'Manes.02G099900' => 'mes', 'Manes.11G096200' => 'mes', 'Manes.12G007200' => 'mes', 'Manes.14G048300' => 'mes', 'Manes.17G114700' => 'mes', 'Mapoly0002s0070' => 'mpo', 'Mapoly0029s0099' => 'mpo', 'MBI07_g24742_MAGBIO' => 'mbi', 'MBI10_g27988_MAGBIO' => 'mbi', 'MBI11_g13057_MAGBIO' => 'mbi', 'MD02G1137200' => 'mdo', 'MD06G1137200' => 'mdo', 'MD07G1122300' => 'mdo', 'MD09G1078200' => 'mdo', 'MD13G1123700' => 'mdo', 'MD14G1151900' => 'mdo', 'MD17G1030900' => 'mdo', 'MD17G1068200' => 'mdo', 'MD17G1068600' => 'mdo', 'Medtr3g077540' => 'mtr', 'Medtr4g105530' => 'mtr', 'Medtr8g076580' => 'mtr', 'Medtr8g076590' => 'mtr', 'Medtr8g096410' => 'mtr', 'MELO3C016411.2' => 'cme', 'MELO3C017780.2' => 'cme', 'MELO3C022560.2' => 'cme', 'MELO3C026187.2' => 'cme', 'MELO3C026286.2' => 'cme', 'MELO3C032854.2' => 'cme', 'Migut.H02495' => 'egut', 'Migut.I00561' => 'egut', 'Migut.K01015' => 'egut', 'Migut.K01016' => 'egut', 'Migut.L00743' => 'egut', 'Migut.L00744' => 'egut', 'Migut.L00746' => 'egut', 'Migut.L00798' => 'egut', 'Migut.L00799' => 'egut', 'Migut.N02096' => 'egut', 'MSTRG.11259' => 'ama', 'MSTRG.23142' => 'ama', 'MSTRG.2499' => 'ama', 'Nitab4.5_0000003g0730' => 'nta', 'Nitab4.5_0000137g0020' => 'nta', 'Nitab4.5_0000721g0210' => 'nta', 'Nitab4.5_0000723g0050' => 'nta', 'Nitab4.5_0000913g0070' => 'nta', 'Nitab4.5_0001332g0040' => 'nta', 'Nitab4.5_0001771g0050' => 'nta', 'Nitab4.5_0001918g0050' => 'nta', 'Nitab4.5_0002686g0030' => 'nta', 'Nitab4.5_0003156g0020' => 'nta', 'Nitab4.5_0003383g0040' => 'nta', 'Nitab4.5_0003918g0010' => 'nta', 'Nitab4.5_0006760g0010' => 'nta', 'Nn1g05981' => 'nnu', 'Nn1g06288' => 'nnu', 'Nn3g16371' => 'nnu', 'Nn3g16786' => 'nnu', 'Nn4g22232' => 'nnu', 'Oeu005144.1' => 'oeu', 'Oeu005145.1' => 'oeu', 'Oeu011348.1' => 'oeu', 'Oeu016415.1' => 'oeu', 'Oeu023501.1' => 'oeu', 'Oeu044473.1' => 'oeu', 'Oeu048892.2' => 'oeu', 'Os01g0549200' => 'osa', 'Os02g0469300' => 'osa', 'Os04g0311100' => 'osa', 'Os06g0474900' => 'osa', 'Os10g0181700' => 'osa', 'Os11g0454800' => 'osa', 'Peaxi162Scf00037g00714' => 'pax', 'Peaxi162Scf00084g01217' => 'pax', 'Peaxi162Scf00257g00217' => 'pax', 'Peaxi162Scf00516g00215' => 'pax', 'Peaxi162Scf00689g00123' => 'pax', 'PGR044G2719' => 'pgr', 'PGR083G1360' => 'pgr', 'PGR102G2849' => 'pgr', 'PGR119G2534' => 'pgr', 'PGSC0003DMG400003538' => 'stu', 'PGSC0003DMG400028138' => 'stu', 'PGSC0003DMG400031732' => 'stu', 'PGSC0003DMG400038165' => 'stu', 'Phvul.002G284600' => 'pvu', 'Phvul.003G258200' => 'pvu', 'Phvul.009G176500' => 'pvu', 'Potri.003G167201' => 'ptr', 'Potri.005G118400' => 'ptr', 'Potri.012G089000' => 'ptr', 'Potri.012G102800' => 'ptr', 'Potri.015G079400' => 'ptr', 'Potri.015G100900' => 'ptr', 'Pp3c14_9810' => 'ppa', 'Pp3c15_10450' => 'ppa', 'Pp3c20_19150' => 'ppa', 'Pp3c23_12740' => 'ppa', 'Pp3c23_6310' => 'ppa', 'Pp3c24_3720' => 'ppa', 'Pp3c27_2580' => 'ppa', 'Pp3c9_8990' => 'ppa', 'PRCOL_00002854' => 'pco', 'Prupe.1G221200' => 'ppe', 'Prupe.3G289000' => 'ppe', 'Prupe.5G147000' => 'ppe', 'Prupe.6G157300' => 'ppe', 'Prupe.7G163400' => 'ppe', 'Psat0s2177g0040' => 'psa', 'Psat3g174760' => 'psa', 'Psat3g192160' => 'psa', 'Psat4g058520' => 'psa', 'Psat4g096840' => 'psa', 'Psat7g037320' => 'psa', 'PSO017G1274' => 'pso', 'PSO017G5166' => 'pso', 'PSO063G4558' => 'pso', 'PSO170G4458' => 'pso', 'PSO170G5005' => 'pso', 'PSO210G6156' => 'pso', 'PSO210G6635' => 'pso', 'PSO210G7397' => 'pso', 'PSO210G7700' => 'pso', 'PSO455G0035' => 'pso', 'PSO455G0180' => 'pso', 'PSO478G4515' => 'pso', 'PSO832G1305' => 'pso', 'PSO832G3489' => 'pso', 'QL02p075247' => 'qlo', 'QL03p051148' => 'qlo', 'QL05p010313' => 'qlo', 'QL06p034627' => 'qlo', 'QL10p001889' => 'qlo', 'QL10p010846' => 'qlo', 'RcHm_v2.0_Chr1g0350621' => 'rch', 'RcHm_v2.0_Chr1g0350641' => 'rch', 'RcHm_v2.0_Chr2g0092891' => 'rch', 'RcHm_v2.0_Chr2g0100251' => 'rch', 'RcHm_v2.0_Chr2g0158661' => 'rch', 'RcHm_v2.0_Chr2g0172741' => 'rch', 'RcHm_v2.0_Chr4g0429571' => 'rch', 'RcHm_v2.0_Chr5g0042471' => 'rch', 'RcHm_v2.0_Chr7g0189451' => 'rch', 'Rhsim08G0052000' => 'rsi', 'Rhsim08G0174400' => 'rsi', 'Rhsim08G0193200' => 'rsi', 'Rhsim10G0214800' => 'rsi', 'Rhsim10G0214900' => 'rsi', 'Rhsim10G0215000' => 'rsi', 'Rhsim12G0022900' => 'rsi', 'Rhsim12G0177500' => 'rsi', 'Rhsim12G0177700' => 'rsi', 'Sabra03G0122600' => 'sbr', 'Sabra05G0097400' => 'sbr', 'Sabra12G0064100' => 'sbr', 'Sabra15G0121300' => 'sbr', 'SalBow2G0642' => 'sbo', 'SalBow5G2667' => 'sbo', 'SalBow5G4873' => 'sbo', 'SalBow8G2395' => 'sbo', 'Sc03g0003290' => 'sci', 'Sc10g0010130' => 'sci', 'Sc22g0003650' => 'sci', 'Sed0001603' => 'sed', 'Sed0004259' => 'sed', 'Sed0006789' => 'sed', 'Sed0011838' => 'sed', 'Sed0012964' => 'sed', 'Sed0016383' => 'sed', 'Sed0019010' => 'sed', 'Sed0020188' => 'sed', 'SEGI_04702' => 'sgi', 'SEGI_17231' => 'sgi', 'SEGI_18877' => 'sgi', 'SEGI_25196' => 'sgi', 'SEGI_25515' => 'sgi', 'SEGI_28445' => 'sgi', 'SEGI_37452' => 'sgi', 'SGA_v2.0_scaffold188G40336' => 'sas', 'SGA_v2.0_scaffold228G43247' => 'sas', 'SGA_v2.0_scaffold280G46853' => 'sas', 'SGA_v2.0_scaffold34G13808' => 'sas', 'SGA_v2.0_scaffold40G15576' => 'sas', 'SGA_v2.0_scaffold611G53188' => 'sas', 'SGA_v2.0_scaffold78G25461' => 'sas', 'SGA_v2.0_scaffold90G27888' => 'sas', 'SHI08601' => 'shi', 'SHI08606' => 'shi', 'SHI17117' => 'shi', 'SHI17119' => 'shi', 'SMO118G0201' => 'smo', 'SMO169G0247' => 'smo', 'SMO176G0006' => 'smo', 'SMO176G0015' => 'smo', 'SMO202G0006' => 'smo', 'SMO240G0050' => 'smo', 'SMO286G0009' => 'smo', 'SMO338G0033' => 'smo', 'SMO356G0533' => 'smo', 'SMO364G0382' => 'smo', 'SMO367G0166' => 'smo', 'SMO367G1098' => 'smo', 'Solyc01g009920.3' => 'sly', 'Solyc01g099300.3' => 'sly', 'Solyc02g084700.3' => 'sly', 'Solyc03g097520.3' => 'sly', 'Solyc06g071580.3' => 'sly', 'Solyc10g081760.3' => 'sly', 'Sopen01g005480' => 'spe', 'Sopen01g042850' => 'spe', 'Sopen02g029370' => 'spe', 'Sopen03g028280' => 'spe', 'Sopen06g027870' => 'spe', 'Sopen10g032270' => 'spe', 'Sp5g18180' => 'spa', 'Sp6g12880' => 'spa', 'Sp6g30850' => 'spa', 'Sp7g22960' => 'spa', 'Sp7g34010' => 'spa', 'SpUn1326_0010' => 'spa', 'TAR371G0242' => 'tar', 'TAR622G0638' => 'tar', 'TAR628G1548' => 'tar', 'TAR629G1079' => 'tar', 'TAR629G3413' => 'tar', 'THA.LOC104804249' => 'tha', 'THA.LOC104808315' => 'tha', 'THA.LOC104809238' => 'tha', 'THA.LOC104825484' => 'tha', 'Thecc.01G025500' => 'tca', 'Thecc.03G015800' => 'tca', 'Thecc.03G018000' => 'tca', 'Thecc.03G134800' => 'tca', 'Thecc.04G014700' => 'tca', 'Thhalv10006991m.g' => 'esa', 'Thhalv10012707m.g' => 'esa', 'Thhalv10015739m.g' => 'esa', 'Thhalv10024553m.g' => 'esa', 'Thhalv10024673m.g' => 'esa', 'Thhalv10029187m.g' => 'esa', 'TPR.G12971' => 'tpr', 'TPR.G29396' => 'tpr', 'TPR.G33376' => 'tpr', 'TPR.G35508' => 'tpr', 'TPR.G35516' => 'tpr', 'TPR.G37317' => 'tpr', 'TPR.G37389' => 'tpr', 'TPR.G37523' => 'tpr', 'TPR.G559' => 'tpr', 'TWI14G0070' => 'twi', 'TWI14G0729' => 'twi', 'TWI18G0596' => 'twi', 'TWI39G0780' => 'twi', 'TWI39G0850' => 'twi', 'TWI73G1052' => 'twi', 'unitig_52.g17485' => 'ugi', 'unitig_61.g26355' => 'ugi', 'vmacro01040' => 'vma', 'vmacro16731' => 'vma', 'vmacro18270' => 'vma', 'vmacro19142' => 'vma', 'vmacro19407' => 'vma', 'vmacro19408' => 'vma', 'vmacro21899' => 'vma', 'vmacro21900' => 'vma', 'vmacro21901' => 'vma', 'VMungo0251G0490' => 'vmu', 'VMungo0251G1748' => 'vmu', 'VMungo1309G0421' => 'vmu', 'Zm00001eb086500' => 'zma', 'Zm00001eb150680' => 'zma', 'Zm00001eb162330' => 'zma', 'Zm00001eb203130' => 'zma', 'Zm00001eb369480' => 'zma', 'Zm00001eb382340' => 'zma', 'Zm00001eb416360' => 'zma' ) $gf_id = 'HOM05D000902' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000902' ) $data_identifier = 'HOM05D000902' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 13, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 10, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 6, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 9, 'hma' => (int) 12, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 4, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 6, 'ppa' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 6, 'rch' => (int) 9, 'rsi' => (int) 9, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 12, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 3, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416360' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000902', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '663', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02470' => 'bna', 'A01p16260' => 'bna', 'A02p01680' => 'bna', 'A03p16600' => 'bna', 'A03p55660' => 'bna', 'A03p64160' => 'bna', 'A03p64170' => 'bna', 'A08p31900' => 'bna', 'A09p59530' => 'bna', 'A10p08230' => 'bna', 'A10p25090' => 'bna', 'Aa31LG3G7100' => 'aar', 'Aa31LG3G7110' => 'aar', 'Aa31LG6G13160' => 'aar', 'Aa31LG7G10770' => 'aar', 'Aa31LG7G3830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2723' => 'aag', 'Actinidia08045' => 'ach', 'Actinidia08888' => 'ach', 'Actinidia18333' => 'ach', 'Actinidia19334' => 'ach', 'Actinidia25552' => 'ach', 'Actinidia26089' => 'ach', 'Actinidia30615' => 'ach', 'Actinidia30616' => 'ach', 'Actinidia33083' => 'ach', 'Actinidia35762' => 'ach', 'Ah.02g110620' => 'amhyb', 'Ah.11g046390' => 'amhyb', 'AL1G31670' => 'aly', 'AL6G23730' => 'aly', 'AL7G14740' => 'aly', 'AL7G14750' => 'aly', 'AL7G14760' => 'aly', 'AL7G28220' => 'aly', 'AL8G24940' => 'aly', 'Aqoxy3G01665' => 'aox', 'Aqoxy3G02853' => 'aox', 'Aqoxy5G01513' => 'aox', 'Aqoxy5G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8SKA4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ75LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKDA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0LJZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7REX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZP4YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWX7I5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2QKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS0L9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPCD8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q161UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC7XCF' => 'arhy', 'AT1G19100' => 'ath', 'AT4G24970' => 'ath', 'AT4G36270' => 'ath', 'AT4G36280' => 'ath', 'AT4G36290' => 'ath', 'AT5G13130' => 'ath', 'AT5G50780' => 'ath', 'ATR0582G266' => 'atr', 'ATR0661G195' => 'atr', 'ATR1152G031' => 'atr', 'Atru.chr11.2382' => 'acertr', 'Atru.chr12.2337' => 'acertr', 'Atru.chr3.744' => 'acertr', 'Atru.chr6.1870' => 'acertr', 'Atru.chr9.2515' => 'acertr', 'AUR62004120' => 'cqu', 'AUR62005667' => 'cqu', 'AUR62007634' => 'cqu', 'AUR62008186' => 'cqu', 'AUR62008187' => 'cqu', 'AUR62008188' => 'cqu', 'AUR62027954' => 'cqu', 'AUR62028766' => 'cqu', 'AUR62028767' => 'cqu', 'AUR62028768' => 'cqu', 'AUR62028886' => 'cqu', 'AUR62029563' => 'cqu', 'AUR62038832' => 'cqu', 'BcaB01g04149' => 'bca', 'BcaB03g12940' => 'bca', 'BcaB03g13090' => 'bca', 'BcaB03g14466' => 'bca', 'BcaB05g24035' => 'bca', 'BcaC01g06050' => 'bca', 'BcaC04g19148' => 'bca', 'BcaC04g20761' => 'bca', 'BcaC06g32845' => 'bca', 'BcaC07g41274' => 'bca', 'BcaC09g50827' => 'bca', 'BcaNung00741' => 'bca', 'BcaNung00742' => 'bca', 'BcaNung01859' => 'bca', 'BcaNung03985' => 'bca', 'BcaNung03989' => 'bca', 'BcaNung05661' => 'bca', 'BolC1t00257H' => 'bol', 'BolC1t01956H' => 'bol', 'BolC2t06534H' => 'bol', 'BolC3t14334H' => 'bol', 'BolC5t30451H' => 'bol', 'BolC7t45880H' => 'bol', 'BolC7t46586H' => 'bol', 'BolC8t49301H' => 'bol', 'BolC8t51837H' => 'bol', 'BolC9t56822H' => 'bol', 'BolC9t59235H' => 'bol', 'BraA01t00234Z' => 'bra', 'BraA01t01563Z' => 'bra', 'BraA02t05147Z' => 'bra', 'BraA03t10947Z' => 'bra', 'BraA03t14633Z' => 'bra', 'BraA08t35112Z' => 'bra', 'BraA09t41330Z' => 'bra', 'BraA10t44570Z' => 'bra', 'C01p02670' => 'bna', 'C01p20260' => 'bna', 'C02p05890' => 'bna', 'C03p19530' => 'bna', 'C05p17470' => 'bna', 'C07p53900' => 'bna', 'C07p61630' => 'bna', 'C08p16800' => 'bna', 'C08p42810' => 'bna', 'C09p39480' => 'bna', 'C09p63980' => 'bna', 'CAN.G1001.7' => 'can', 'CAN.G1034.55' => 'can', 'CAN.G143.7' => 'can', 'CAN.G3340.1' => 'can', 'CAN.G358.19' => 'can', 'CAN.G373.2' => 'can', 'CAN.G674.16' => 'can', 'CAN.G674.17' => 'can', 'CAN.G674.18' => 'can', 'CAN.G732.2' => 'can', 'CAN.G732.3' => 'can', 'CAN.G993.39' => 'can', 'CANSAT01G2052' => 'cansat', 'CANSAT80G0070' => 'cansat', 'CANSAT80G0483' => 'cansat', 'CANSAT80G0625' => 'cansat', 'CARHR019690' => 'chi', 'CARHR080280' => 'chi', 'CARHR152750' => 'chi', 'CARHR152760' => 'chi', 'CARHR152770' => 'chi', 'CARHR200340' => 'chi', 'CARHR232370' => 'chi', 'CARHR244670' => 'chi', 'CARHR244680' => 'chi', 'CARHR257520' => 'chi', 'Carub.0001s1872' => 'cru', 'Carub.0006s1130' => 'cru', 'Carub.0007s0396' => 'cru', 'Carub.0007s0397' => 'cru', 'Carub.0007s1608' => 'cru', 'Carub.0008s1068' => 'cru', 'Carub.0008s1077' => 'cru', 'Ca_16158_v3' => 'car', 'Ca_17571_v3' => 'car', 'Ca_21936_v3' => 'car', 'Ca_22350_v3' => 'car', 'CBR_g22445' => 'cbr', 'CBR_g26290' => 'cbr', 'Cc04_g09610' => 'ccan', 'Cc04_g12280' => 'ccan', 'Cc07_g10230' => 'ccan', 'CDE02G0093' => 'cde', 'CDE02G0701' => 'cde', 'CDE04G1050' => 'cde', 'CDE05G1833' => 'cde', 'CDE05G3058' => 'cde', 'CDE05G3380' => 'cde', 'CDE06G0536' => 'cde', 'Cfa006923' => 'cfa', 'Cfa009402' => 'cfa', 'Cfa018751' => 'cfa', 'Cfa019164' => 'cfa', 'Cfa022935' => 'cfa', 'Ciclev10019081m.g' => 'ccl', 'Ciclev10025076m.g' => 'ccl', 'Ciclev10030712m.g' => 'ccl', 'Ciclev10033760m.g' => 'ccl', 'CiPaw.05G105600' => 'cil', 'CiPaw.08G136700' => 'cil', 'CiPaw.11G003900' => 'cil', 'CiPaw.11G023700' => 'cil', 'CiPaw.12G003700' => 'cil', 'ClCG06G017100' => 'cla', 'ClCG06G018110' => 'cla', 'ClCG07G008800' => 'cla', 'ClCG07G015330' => 'cla', 'COL.COLO4_13698' => 'col', 'COL.COLO4_16659' => 'col', 'COL.COLO4_21986' => 'col', 'COL.COLO4_24049' => 'col', 'COL.COLO4_29061' => 'col', 'COL.COLO4_29075' => 'col', 'COL.COLO4_30094' => 'col', 'Cpa.g.c33689' => 'cpa', 'Cpa.g.sc108.39' => 'cpa', 'Cpa.g.sc108.41' => 'cpa', 'Cpa.g.sc1163.1' => 'cpa', 'Cpa.g.sc4.155' => 'cpa', 'Cpa.g.sc6.194' => 'cpa', 'CsaV3_1G000340' => 'csa', 'CsaV3_1G001400' => 'csa', 'CsaV3_4G002220' => 'csa', 'CsaV3_4G005370' => 'csa', 'CSS0007487' => 'camsi', 'CSS0008066' => 'camsi', 'CSS0009120' => 'camsi', 'CSS0015512' => 'camsi', 'CSS0022409' => 'camsi', 'CSS0025358' => 'camsi', 'CSS0044547' => 'camsi', 'DCAR_013057' => 'dca', 'DCAR_015058' => 'dca', 'DCAR_016027' => 'dca', 'DCAR_017327' => 'dca', 'DCAR_020743' => 'dca', 'DCAR_026157' => 'dca', 'DCAR_032339' => 'dca', 'DCAR_032340' => 'dca', 'Dinv11200' => 'din', 'Dinv11201' => 'din', 'Dinv20631' => 'din', 'Dinv23182' => 'din', 'Dinv33466' => 'din', 'Dinv33583' => 'din', 'Dinv38565' => 'din', 'Duzib068G0200' => 'dzi', 'Duzib147G0132' => 'dzi', 'Duzib147G0635' => 'dzi', 'Duzib205G1670' => 'dzi', 'Duzib251G0606' => 'dzi', 'ECA232G3336' => 'eca', 'ECA232G3763' => 'eca', 'ECA232G4845' => 'eca', 'ECA234G1607' => 'eca', 'ECA246G0932' => 'eca', 'ECA247G0781' => 'eca', 'ECA247G1932' => 'eca', 'ECA247G2079' => 'eca', 'ECA247G3338' => 'eca', 'ECA247G4115' => 'eca', 'EL10Ac3g06552' => 'bvu', 'EL10Ac5g10721' => 'bvu', 'EL10Ac5g10722' => 'bvu', 'EL10Ac5g10723' => 'bvu', 'EL10Ac5g11361' => 'bvu', 'EL10Ac6g13553' => 'bvu', 'EL10As8g23872' => 'bvu', 'Eucgr.B00250' => 'egr', 'Eucgr.B00251' => 'egr', 'Eucgr.B03533' => 'egr', 'Eucgr.I02381' => 'egr', 'Eucgr.K02700' => 'egr', 'FAN02G0174' => 'fan', 'FAN02G3146' => 'fan', 'FAN04G1672' => 'fan', 'FAN04G2273' => 'fan', 'FAN05G2791' => 'fan', 'FAN05G4035' => 'fan', 'FAN07G0834' => 'fan', 'FAN08G1198' => 'fan', 'FAN09G4182' => 'fan', 'FAN12G0496' => 'fan', 'FAN13G1027' => 'fan', 'FAN13G2951' => 'fan', 'FAN14G0705' => 'fan', 'FAN14G0720' => 'fan', 'FAN17G0201' => 'fan', 'FAN17G2665' => 'fan', 'FAN18G1456' => 'fan', 'FAN18G1525' => 'fan', 'FAN18G3500' => 'fan', 'FAN28G2670' => 'fan', 'FvH4_1g12391' => 'fve', 'FvH4_4g23220' => 'fve', 'FvH4_5g08810' => 'fve', 'FvH4_5g28960' => 'fve', 'FvH4_6g42820' => 'fve', 'FvH4_6g51110' => 'fve', 'Glyma.02G051802' => 'gma', 'Glyma.04G185300' => 'gma', 'Glyma.05G202900' => 'gma', 'Glyma.08G010300' => 'gma', 'Glyma.16G131900' => 'gma', 'Glyma.17G087900' => 'gma', 'Gohir.A07G048600' => 'ghi', 'Gohir.A11G179000' => 'ghi', 'Gohir.A12G140900' => 'ghi', 'Gohir.A12G140950' => 'ghi', 'Gohir.A12G191700' => 'ghi', 'Gohir.A13G086300' => 'ghi', 'Gohir.D07G052900' => 'ghi', 'Gohir.D11G186600' => 'ghi', 'Gohir.D12G145575' => 'ghi', 'Gohir.D12G145650' => 'ghi', 'Gohir.D12G145725' => 'ghi', 'Gohir.D12G194050' => 'ghi', 'Gohir.D13G091800' => 'ghi', 'Gorai.001G055900' => 'gra', 'Gorai.007G198400' => 'gra', 'Gorai.008G157000' => 'gra', 'Gorai.008G157100' => 'gra', 'Gorai.008G208700' => 'gra', 'Gorai.010G138700' => 'gra', 'GSVIVG01000977001' => 'vvi', 'GSVIVG01007708001' => 'vvi', 'GSVIVG01008587001' => 'vvi', 'GSVIVG01018849001' => 'vvi', 'GSVIVG01032432001' => 'vvi', 'HanXRQChr02g0034131' => 'han', 'HanXRQChr02g0035981' => 'han', 'HanXRQChr02g0035991' => 'han', 'HanXRQChr05g0155611' => 'han', 'HanXRQChr05g0155621' => 'han', 'HanXRQChr08g0236501' => 'han', 'HanXRQChr09g0261321' => 'han', 'HanXRQChr09g0272081' => 'han', 'HanXRQChr10g0310741' => 'han', 'HanXRQChr11g0325591' => 'han', 'HanXRQChr12g0385691' => 'han', 'HanXRQChr13g0387801' => 'han', 'HanXRQChr15g0463011' => 'han', 'Haze_03826' => 'cav', 'Haze_03827' => 'cav', 'Haze_07183' => 'cav', 'Haze_07537' => 'cav', 'Haze_07539' => 'cav', 'Haze_12461' => 'cav', 'Haze_16115' => 'cav', 'Haze_16808' => 'cav', 'Haze_18531' => 'cav', 'Hma1.2p1_0046F.1_g026700' => 'hma', 'Hma1.2p1_0046F.1_g026710' => 'hma', 'Hma1.2p1_0168F.1_g074340' => 'hma', 'Hma1.2p1_0266F.1_g107030' => 'hma', 'Hma1.2p1_0266F.1_g107060' => 'hma', 'Hma1.2p1_0275F.1_g110510' => 'hma', 'Hma1.2p1_0592F.1_g185490' => 'hma', 'Hma1.2p1_0592F.1_g185500' => 'hma', 'Hma1.2p1_0592F.1_g185510' => 'hma', 'Hma1.2p1_0592F.1_g185520' => 'hma', 'Hma1.2p1_0592F.1_g185530' => 'hma', 'Hma1.2p1_0818F.1_g223450' => 'hma', 'HPP92_009708' => 'vpl', 'HPP92_009793' => 'vpl', 'HPP92_009796' => 'vpl', 'HPP92_009797' => 'vpl', 'HPP92_014940' => 'vpl', 'HPP92_014988' => 'vpl', 'Hund02463' => 'sun', 'Hund02760' => 'sun', 'Hund05071' => 'sun', 'Hund10108' => 'sun', 'Hund11204' => 'sun', 'Hund14016' => 'sun', 'Hund16464' => 'sun', 'Lalb_Chr09g0333391' => 'lal', 'Lalb_Chr11g0070461' => 'lal', 'Lalb_Chr12g0201671' => 'lal', 'Lalb_Chr13g0297161' => 'lal', 'Lj1g0002823' => 'lja', 'Lj3C1074T6' => 'lonja', 'Lj4A212T28' => 'lonja', 'Lj4g0005516' => 'lja', 'Lj4g0013705' => 'lja', 'Lj4g0027865' => 'lja', 'Lj5C92G16' => 'lonja', 'Lj5C92T12' => 'lonja', 'Lj7C596T3' => 'lonja', 'Lj9A446G59' => 'lonja', 'Lj9A482G21' => 'lonja', 'Lsat_1_v5_gn_1_28261' => 'lsa', 'Lsat_1_v5_gn_1_28281' => 'lsa', 'Lsat_1_v5_gn_1_32721' => 'lsa', 'Lsat_1_v5_gn_4_151760' => 'lsa', 'Lsat_1_v5_gn_4_2120' => 'lsa', 'Lsat_1_v5_gn_4_75761' => 'lsa', 'Lsat_1_v5_gn_5_10920' => 'lsa', 'Manes.02G099900' => 'mes', 'Manes.11G096200' => 'mes', 'Manes.12G007200' => 'mes', 'Manes.14G048300' => 'mes', 'Manes.17G114700' => 'mes', 'Mapoly0002s0070' => 'mpo', 'Mapoly0029s0099' => 'mpo', 'MBI07_g24742_MAGBIO' => 'mbi', 'MBI10_g27988_MAGBIO' => 'mbi', 'MBI11_g13057_MAGBIO' => 'mbi', 'MD02G1137200' => 'mdo', 'MD06G1137200' => 'mdo', 'MD07G1122300' => 'mdo', 'MD09G1078200' => 'mdo', 'MD13G1123700' => 'mdo', 'MD14G1151900' => 'mdo', 'MD17G1030900' => 'mdo', 'MD17G1068200' => 'mdo', 'MD17G1068600' => 'mdo', 'Medtr3g077540' => 'mtr', 'Medtr4g105530' => 'mtr', 'Medtr8g076580' => 'mtr', 'Medtr8g076590' => 'mtr', 'Medtr8g096410' => 'mtr', 'MELO3C016411.2' => 'cme', 'MELO3C017780.2' => 'cme', 'MELO3C022560.2' => 'cme', 'MELO3C026187.2' => 'cme', 'MELO3C026286.2' => 'cme', 'MELO3C032854.2' => 'cme', 'Migut.H02495' => 'egut', 'Migut.I00561' => 'egut', 'Migut.K01015' => 'egut', 'Migut.K01016' => 'egut', 'Migut.L00743' => 'egut', 'Migut.L00744' => 'egut', 'Migut.L00746' => 'egut', 'Migut.L00798' => 'egut', 'Migut.L00799' => 'egut', 'Migut.N02096' => 'egut', 'MSTRG.11259' => 'ama', 'MSTRG.23142' => 'ama', 'MSTRG.2499' => 'ama', 'Nitab4.5_0000003g0730' => 'nta', 'Nitab4.5_0000137g0020' => 'nta', 'Nitab4.5_0000721g0210' => 'nta', 'Nitab4.5_0000723g0050' => 'nta', 'Nitab4.5_0000913g0070' => 'nta', 'Nitab4.5_0001332g0040' => 'nta', 'Nitab4.5_0001771g0050' => 'nta', 'Nitab4.5_0001918g0050' => 'nta', 'Nitab4.5_0002686g0030' => 'nta', 'Nitab4.5_0003156g0020' => 'nta', 'Nitab4.5_0003383g0040' => 'nta', 'Nitab4.5_0003918g0010' => 'nta', 'Nitab4.5_0006760g0010' => 'nta', 'Nn1g05981' => 'nnu', 'Nn1g06288' => 'nnu', 'Nn3g16371' => 'nnu', 'Nn3g16786' => 'nnu', 'Nn4g22232' => 'nnu', 'Oeu005144.1' => 'oeu', 'Oeu005145.1' => 'oeu', 'Oeu011348.1' => 'oeu', 'Oeu016415.1' => 'oeu', 'Oeu023501.1' => 'oeu', 'Oeu044473.1' => 'oeu', 'Oeu048892.2' => 'oeu', 'Os01g0549200' => 'osa', 'Os02g0469300' => 'osa', 'Os04g0311100' => 'osa', 'Os06g0474900' => 'osa', 'Os10g0181700' => 'osa', 'Os11g0454800' => 'osa', 'Peaxi162Scf00037g00714' => 'pax', 'Peaxi162Scf00084g01217' => 'pax', 'Peaxi162Scf00257g00217' => 'pax', 'Peaxi162Scf00516g00215' => 'pax', 'Peaxi162Scf00689g00123' => 'pax', 'PGR044G2719' => 'pgr', 'PGR083G1360' => 'pgr', 'PGR102G2849' => 'pgr', 'PGR119G2534' => 'pgr', 'PGSC0003DMG400003538' => 'stu', 'PGSC0003DMG400028138' => 'stu', 'PGSC0003DMG400031732' => 'stu', 'PGSC0003DMG400038165' => 'stu', 'Phvul.002G284600' => 'pvu', 'Phvul.003G258200' => 'pvu', 'Phvul.009G176500' => 'pvu', 'Potri.003G167201' => 'ptr', 'Potri.005G118400' => 'ptr', 'Potri.012G089000' => 'ptr', 'Potri.012G102800' => 'ptr', 'Potri.015G079400' => 'ptr', 'Potri.015G100900' => 'ptr', 'Pp3c14_9810' => 'ppa', 'Pp3c15_10450' => 'ppa', 'Pp3c20_19150' => 'ppa', 'Pp3c23_12740' => 'ppa', 'Pp3c23_6310' => 'ppa', 'Pp3c24_3720' => 'ppa', 'Pp3c27_2580' => 'ppa', 'Pp3c9_8990' => 'ppa', 'PRCOL_00002854' => 'pco', 'Prupe.1G221200' => 'ppe', 'Prupe.3G289000' => 'ppe', 'Prupe.5G147000' => 'ppe', 'Prupe.6G157300' => 'ppe', 'Prupe.7G163400' => 'ppe', 'Psat0s2177g0040' => 'psa', 'Psat3g174760' => 'psa', 'Psat3g192160' => 'psa', 'Psat4g058520' => 'psa', 'Psat4g096840' => 'psa', 'Psat7g037320' => 'psa', 'PSO017G1274' => 'pso', 'PSO017G5166' => 'pso', 'PSO063G4558' => 'pso', 'PSO170G4458' => 'pso', 'PSO170G5005' => 'pso', 'PSO210G6156' => 'pso', 'PSO210G6635' => 'pso', 'PSO210G7397' => 'pso', 'PSO210G7700' => 'pso', 'PSO455G0035' => 'pso', 'PSO455G0180' => 'pso', 'PSO478G4515' => 'pso', 'PSO832G1305' => 'pso', 'PSO832G3489' => 'pso', 'QL02p075247' => 'qlo', 'QL03p051148' => 'qlo', 'QL05p010313' => 'qlo', 'QL06p034627' => 'qlo', 'QL10p001889' => 'qlo', 'QL10p010846' => 'qlo', 'RcHm_v2.0_Chr1g0350621' => 'rch', 'RcHm_v2.0_Chr1g0350641' => 'rch', 'RcHm_v2.0_Chr2g0092891' => 'rch', 'RcHm_v2.0_Chr2g0100251' => 'rch', 'RcHm_v2.0_Chr2g0158661' => 'rch', 'RcHm_v2.0_Chr2g0172741' => 'rch', 'RcHm_v2.0_Chr4g0429571' => 'rch', 'RcHm_v2.0_Chr5g0042471' => 'rch', 'RcHm_v2.0_Chr7g0189451' => 'rch', 'Rhsim08G0052000' => 'rsi', 'Rhsim08G0174400' => 'rsi', 'Rhsim08G0193200' => 'rsi', 'Rhsim10G0214800' => 'rsi', 'Rhsim10G0214900' => 'rsi', 'Rhsim10G0215000' => 'rsi', 'Rhsim12G0022900' => 'rsi', 'Rhsim12G0177500' => 'rsi', 'Rhsim12G0177700' => 'rsi', 'Sabra03G0122600' => 'sbr', 'Sabra05G0097400' => 'sbr', 'Sabra12G0064100' => 'sbr', 'Sabra15G0121300' => 'sbr', 'SalBow2G0642' => 'sbo', 'SalBow5G2667' => 'sbo', 'SalBow5G4873' => 'sbo', 'SalBow8G2395' => 'sbo', 'Sc03g0003290' => 'sci', 'Sc10g0010130' => 'sci', 'Sc22g0003650' => 'sci', 'Sed0001603' => 'sed', 'Sed0004259' => 'sed', 'Sed0006789' => 'sed', 'Sed0011838' => 'sed', 'Sed0012964' => 'sed', 'Sed0016383' => 'sed', 'Sed0019010' => 'sed', 'Sed0020188' => 'sed', 'SEGI_04702' => 'sgi', 'SEGI_17231' => 'sgi', 'SEGI_18877' => 'sgi', 'SEGI_25196' => 'sgi', 'SEGI_25515' => 'sgi', 'SEGI_28445' => 'sgi', 'SEGI_37452' => 'sgi', 'SGA_v2.0_scaffold188G40336' => 'sas', 'SGA_v2.0_scaffold228G43247' => 'sas', 'SGA_v2.0_scaffold280G46853' => 'sas', 'SGA_v2.0_scaffold34G13808' => 'sas', 'SGA_v2.0_scaffold40G15576' => 'sas', 'SGA_v2.0_scaffold611G53188' => 'sas', 'SGA_v2.0_scaffold78G25461' => 'sas', 'SGA_v2.0_scaffold90G27888' => 'sas', 'SHI08601' => 'shi', 'SHI08606' => 'shi', 'SHI17117' => 'shi', 'SHI17119' => 'shi', 'SMO118G0201' => 'smo', 'SMO169G0247' => 'smo', 'SMO176G0006' => 'smo', 'SMO176G0015' => 'smo', 'SMO202G0006' => 'smo', 'SMO240G0050' => 'smo', 'SMO286G0009' => 'smo', 'SMO338G0033' => 'smo', 'SMO356G0533' => 'smo', 'SMO364G0382' => 'smo', 'SMO367G0166' => 'smo', 'SMO367G1098' => 'smo', 'Solyc01g009920.3' => 'sly', 'Solyc01g099300.3' => 'sly', 'Solyc02g084700.3' => 'sly', 'Solyc03g097520.3' => 'sly', 'Solyc06g071580.3' => 'sly', 'Solyc10g081760.3' => 'sly', 'Sopen01g005480' => 'spe', 'Sopen01g042850' => 'spe', 'Sopen02g029370' => 'spe', 'Sopen03g028280' => 'spe', 'Sopen06g027870' => 'spe', 'Sopen10g032270' => 'spe', 'Sp5g18180' => 'spa', 'Sp6g12880' => 'spa', 'Sp6g30850' => 'spa', 'Sp7g22960' => 'spa', 'Sp7g34010' => 'spa', 'SpUn1326_0010' => 'spa', 'TAR371G0242' => 'tar', 'TAR622G0638' => 'tar', 'TAR628G1548' => 'tar', 'TAR629G1079' => 'tar', 'TAR629G3413' => 'tar', 'THA.LOC104804249' => 'tha', 'THA.LOC104808315' => 'tha', 'THA.LOC104809238' => 'tha', 'THA.LOC104825484' => 'tha', 'Thecc.01G025500' => 'tca', 'Thecc.03G015800' => 'tca', 'Thecc.03G018000' => 'tca', 'Thecc.03G134800' => 'tca', 'Thecc.04G014700' => 'tca', 'Thhalv10006991m.g' => 'esa', 'Thhalv10012707m.g' => 'esa', 'Thhalv10015739m.g' => 'esa', 'Thhalv10024553m.g' => 'esa', 'Thhalv10024673m.g' => 'esa', 'Thhalv10029187m.g' => 'esa', 'TPR.G12971' => 'tpr', 'TPR.G29396' => 'tpr', 'TPR.G33376' => 'tpr', 'TPR.G35508' => 'tpr', 'TPR.G35516' => 'tpr', 'TPR.G37317' => 'tpr', 'TPR.G37389' => 'tpr', 'TPR.G37523' => 'tpr', 'TPR.G559' => 'tpr', 'TWI14G0070' => 'twi', 'TWI14G0729' => 'twi', 'TWI18G0596' => 'twi', 'TWI39G0780' => 'twi', 'TWI39G0850' => 'twi', 'TWI73G1052' => 'twi', 'unitig_52.g17485' => 'ugi', 'unitig_61.g26355' => 'ugi', 'vmacro01040' => 'vma', 'vmacro16731' => 'vma', 'vmacro18270' => 'vma', 'vmacro19142' => 'vma', 'vmacro19407' => 'vma', 'vmacro19408' => 'vma', 'vmacro21899' => 'vma', 'vmacro21900' => 'vma', 'vmacro21901' => 'vma', 'VMungo0251G0490' => 'vmu', 'VMungo0251G1748' => 'vmu', 'VMungo1309G0421' => 'vmu', 'Zm00001eb086500' => 'zma', 'Zm00001eb150680' => 'zma', 'Zm00001eb162330' => 'zma', 'Zm00001eb203130' => 'zma', 'Zm00001eb369480' => 'zma', 'Zm00001eb382340' => 'zma', 'Zm00001eb416360' => 'zma' ), 'gf_id' => 'HOM05D000902', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000902' ), 'data_identifier' => 'HOM05D000902', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000902', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '663', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02470' => 'bna', 'A01p16260' => 'bna', 'A02p01680' => 'bna', 'A03p16600' => 'bna', 'A03p55660' => 'bna', 'A03p64160' => 'bna', 'A03p64170' => 'bna', 'A08p31900' => 'bna', 'A09p59530' => 'bna', 'A10p08230' => 'bna', 'A10p25090' => 'bna', 'Aa31LG3G7100' => 'aar', 'Aa31LG3G7110' => 'aar', 'Aa31LG6G13160' => 'aar', 'Aa31LG7G10770' => 'aar', 'Aa31LG7G3830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2723' => 'aag', 'Actinidia08045' => 'ach', 'Actinidia08888' => 'ach', 'Actinidia18333' => 'ach', 'Actinidia19334' => 'ach', 'Actinidia25552' => 'ach', 'Actinidia26089' => 'ach', 'Actinidia30615' => 'ach', 'Actinidia30616' => 'ach', 'Actinidia33083' => 'ach', 'Actinidia35762' => 'ach', 'Ah.02g110620' => 'amhyb', 'Ah.11g046390' => 'amhyb', 'AL1G31670' => 'aly', 'AL6G23730' => 'aly', 'AL7G14740' => 'aly', 'AL7G14750' => 'aly', 'AL7G14760' => 'aly', 'AL7G28220' => 'aly', 'AL8G24940' => 'aly', 'Aqoxy3G01665' => 'aox', 'Aqoxy3G02853' => 'aox', 'Aqoxy5G01513' => 'aox', 'Aqoxy5G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8SKA4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ75LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKDA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0LJZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7REX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZP4YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWX7I5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2QKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS0L9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPCD8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q161UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC7XCF' => 'arhy', 'AT1G19100' => 'ath', 'AT4G24970' => 'ath', 'AT4G36270' => 'ath', 'AT4G36280' => 'ath', 'AT4G36290' => 'ath', 'AT5G13130' => 'ath', 'AT5G50780' => 'ath', 'ATR0582G266' => 'atr', 'ATR0661G195' => 'atr', 'ATR1152G031' => 'atr', 'Atru.chr11.2382' => 'acertr', 'Atru.chr12.2337' => 'acertr', 'Atru.chr3.744' => 'acertr', 'Atru.chr6.1870' => 'acertr', 'Atru.chr9.2515' => 'acertr', 'AUR62004120' => 'cqu', 'AUR62005667' => 'cqu', 'AUR62007634' => 'cqu', 'AUR62008186' => 'cqu', 'AUR62008187' => 'cqu', 'AUR62008188' => 'cqu', 'AUR62027954' => 'cqu', 'AUR62028766' => 'cqu', 'AUR62028767' => 'cqu', 'AUR62028768' => 'cqu', 'AUR62028886' => 'cqu', 'AUR62029563' => 'cqu', 'AUR62038832' => 'cqu', 'BcaB01g04149' => 'bca', 'BcaB03g12940' => 'bca', 'BcaB03g13090' => 'bca', 'BcaB03g14466' => 'bca', 'BcaB05g24035' => 'bca', 'BcaC01g06050' => 'bca', 'BcaC04g19148' => 'bca', 'BcaC04g20761' => 'bca', 'BcaC06g32845' => 'bca', 'BcaC07g41274' => 'bca', 'BcaC09g50827' => 'bca', 'BcaNung00741' => 'bca', 'BcaNung00742' => 'bca', 'BcaNung01859' => 'bca', 'BcaNung03985' => 'bca', 'BcaNung03989' => 'bca', 'BcaNung05661' => 'bca', 'BolC1t00257H' => 'bol', 'BolC1t01956H' => 'bol', 'BolC2t06534H' => 'bol', 'BolC3t14334H' => 'bol', 'BolC5t30451H' => 'bol', 'BolC7t45880H' => 'bol', 'BolC7t46586H' => 'bol', 'BolC8t49301H' => 'bol', 'BolC8t51837H' => 'bol', 'BolC9t56822H' => 'bol', 'BolC9t59235H' => 'bol', 'BraA01t00234Z' => 'bra', 'BraA01t01563Z' => 'bra', 'BraA02t05147Z' => 'bra', 'BraA03t10947Z' => 'bra', 'BraA03t14633Z' => 'bra', 'BraA08t35112Z' => 'bra', 'BraA09t41330Z' => 'bra', 'BraA10t44570Z' => 'bra', 'C01p02670' => 'bna', 'C01p20260' => 'bna', 'C02p05890' => 'bna', 'C03p19530' => 'bna', 'C05p17470' => 'bna', 'C07p53900' => 'bna', 'C07p61630' => 'bna', 'C08p16800' => 'bna', 'C08p42810' => 'bna', 'C09p39480' => 'bna', 'C09p63980' => 'bna', 'CAN.G1001.7' => 'can', 'CAN.G1034.55' => 'can', 'CAN.G143.7' => 'can', 'CAN.G3340.1' => 'can', 'CAN.G358.19' => 'can', 'CAN.G373.2' => 'can', 'CAN.G674.16' => 'can', 'CAN.G674.17' => 'can', 'CAN.G674.18' => 'can', 'CAN.G732.2' => 'can', 'CAN.G732.3' => 'can', 'CAN.G993.39' => 'can', 'CANSAT01G2052' => 'cansat', 'CANSAT80G0070' => 'cansat', 'CANSAT80G0483' => 'cansat', 'CANSAT80G0625' => 'cansat', 'CARHR019690' => 'chi', 'CARHR080280' => 'chi', 'CARHR152750' => 'chi', 'CARHR152760' => 'chi', 'CARHR152770' => 'chi', 'CARHR200340' => 'chi', 'CARHR232370' => 'chi', 'CARHR244670' => 'chi', 'CARHR244680' => 'chi', 'CARHR257520' => 'chi', 'Carub.0001s1872' => 'cru', 'Carub.0006s1130' => 'cru', 'Carub.0007s0396' => 'cru', 'Carub.0007s0397' => 'cru', 'Carub.0007s1608' => 'cru', 'Carub.0008s1068' => 'cru', 'Carub.0008s1077' => 'cru', 'Ca_16158_v3' => 'car', 'Ca_17571_v3' => 'car', 'Ca_21936_v3' => 'car', 'Ca_22350_v3' => 'car', 'CBR_g22445' => 'cbr', 'CBR_g26290' => 'cbr', 'Cc04_g09610' => 'ccan', 'Cc04_g12280' => 'ccan', 'Cc07_g10230' => 'ccan', 'CDE02G0093' => 'cde', 'CDE02G0701' => 'cde', 'CDE04G1050' => 'cde', 'CDE05G1833' => 'cde', 'CDE05G3058' => 'cde', 'CDE05G3380' => 'cde', 'CDE06G0536' => 'cde', 'Cfa006923' => 'cfa', 'Cfa009402' => 'cfa', 'Cfa018751' => 'cfa', 'Cfa019164' => 'cfa', 'Cfa022935' => 'cfa', 'Ciclev10019081m.g' => 'ccl', 'Ciclev10025076m.g' => 'ccl', 'Ciclev10030712m.g' => 'ccl', 'Ciclev10033760m.g' => 'ccl', 'CiPaw.05G105600' => 'cil', 'CiPaw.08G136700' => 'cil', 'CiPaw.11G003900' => 'cil', 'CiPaw.11G023700' => 'cil', 'CiPaw.12G003700' => 'cil', 'ClCG06G017100' => 'cla', 'ClCG06G018110' => 'cla', 'ClCG07G008800' => 'cla', 'ClCG07G015330' => 'cla', 'COL.COLO4_13698' => 'col', 'COL.COLO4_16659' => 'col', 'COL.COLO4_21986' => 'col', 'COL.COLO4_24049' => 'col', 'COL.COLO4_29061' => 'col', 'COL.COLO4_29075' => 'col', 'COL.COLO4_30094' => 'col', 'Cpa.g.c33689' => 'cpa', 'Cpa.g.sc108.39' => 'cpa', 'Cpa.g.sc108.41' => 'cpa', 'Cpa.g.sc1163.1' => 'cpa', 'Cpa.g.sc4.155' => 'cpa', 'Cpa.g.sc6.194' => 'cpa', 'CsaV3_1G000340' => 'csa', 'CsaV3_1G001400' => 'csa', 'CsaV3_4G002220' => 'csa', 'CsaV3_4G005370' => 'csa', 'CSS0007487' => 'camsi', 'CSS0008066' => 'camsi', 'CSS0009120' => 'camsi', 'CSS0015512' => 'camsi', 'CSS0022409' => 'camsi', 'CSS0025358' => 'camsi', 'CSS0044547' => 'camsi', 'DCAR_013057' => 'dca', 'DCAR_015058' => 'dca', 'DCAR_016027' => 'dca', 'DCAR_017327' => 'dca', 'DCAR_020743' => 'dca', 'DCAR_026157' => 'dca', 'DCAR_032339' => 'dca', 'DCAR_032340' => 'dca', 'Dinv11200' => 'din', 'Dinv11201' => 'din', 'Dinv20631' => 'din', 'Dinv23182' => 'din', 'Dinv33466' => 'din', 'Dinv33583' => 'din', 'Dinv38565' => 'din', 'Duzib068G0200' => 'dzi', 'Duzib147G0132' => 'dzi', 'Duzib147G0635' => 'dzi', 'Duzib205G1670' => 'dzi', 'Duzib251G0606' => 'dzi', 'ECA232G3336' => 'eca', 'ECA232G3763' => 'eca', 'ECA232G4845' => 'eca', 'ECA234G1607' => 'eca', 'ECA246G0932' => 'eca', 'ECA247G0781' => 'eca', 'ECA247G1932' => 'eca', 'ECA247G2079' => 'eca', 'ECA247G3338' => 'eca', 'ECA247G4115' => 'eca', 'EL10Ac3g06552' => 'bvu', 'EL10Ac5g10721' => 'bvu', 'EL10Ac5g10722' => 'bvu', 'EL10Ac5g10723' => 'bvu', 'EL10Ac5g11361' => 'bvu', 'EL10Ac6g13553' => 'bvu', 'EL10As8g23872' => 'bvu', 'Eucgr.B00250' => 'egr', 'Eucgr.B00251' => 'egr', 'Eucgr.B03533' => 'egr', 'Eucgr.I02381' => 'egr', 'Eucgr.K02700' => 'egr', 'FAN02G0174' => 'fan', 'FAN02G3146' => 'fan', 'FAN04G1672' => 'fan', 'FAN04G2273' => 'fan', 'FAN05G2791' => 'fan', 'FAN05G4035' => 'fan', 'FAN07G0834' => 'fan', 'FAN08G1198' => 'fan', 'FAN09G4182' => 'fan', 'FAN12G0496' => 'fan', 'FAN13G1027' => 'fan', 'FAN13G2951' => 'fan', 'FAN14G0705' => 'fan', 'FAN14G0720' => 'fan', 'FAN17G0201' => 'fan', 'FAN17G2665' => 'fan', 'FAN18G1456' => 'fan', 'FAN18G1525' => 'fan', 'FAN18G3500' => 'fan', 'FAN28G2670' => 'fan', 'FvH4_1g12391' => 'fve', 'FvH4_4g23220' => 'fve', 'FvH4_5g08810' => 'fve', 'FvH4_5g28960' => 'fve', 'FvH4_6g42820' => 'fve', 'FvH4_6g51110' => 'fve', 'Glyma.02G051802' => 'gma', 'Glyma.04G185300' => 'gma', 'Glyma.05G202900' => 'gma', 'Glyma.08G010300' => 'gma', 'Glyma.16G131900' => 'gma', 'Glyma.17G087900' => 'gma', 'Gohir.A07G048600' => 'ghi', 'Gohir.A11G179000' => 'ghi', 'Gohir.A12G140900' => 'ghi', 'Gohir.A12G140950' => 'ghi', 'Gohir.A12G191700' => 'ghi', 'Gohir.A13G086300' => 'ghi', 'Gohir.D07G052900' => 'ghi', 'Gohir.D11G186600' => 'ghi', 'Gohir.D12G145575' => 'ghi', 'Gohir.D12G145650' => 'ghi', 'Gohir.D12G145725' => 'ghi', 'Gohir.D12G194050' => 'ghi', 'Gohir.D13G091800' => 'ghi', 'Gorai.001G055900' => 'gra', 'Gorai.007G198400' => 'gra', 'Gorai.008G157000' => 'gra', 'Gorai.008G157100' => 'gra', 'Gorai.008G208700' => 'gra', 'Gorai.010G138700' => 'gra', 'GSVIVG01000977001' => 'vvi', 'GSVIVG01007708001' => 'vvi', 'GSVIVG01008587001' => 'vvi', 'GSVIVG01018849001' => 'vvi', 'GSVIVG01032432001' => 'vvi', 'HanXRQChr02g0034131' => 'han', 'HanXRQChr02g0035981' => 'han', 'HanXRQChr02g0035991' => 'han', 'HanXRQChr05g0155611' => 'han', 'HanXRQChr05g0155621' => 'han', 'HanXRQChr08g0236501' => 'han', 'HanXRQChr09g0261321' => 'han', 'HanXRQChr09g0272081' => 'han', 'HanXRQChr10g0310741' => 'han', 'HanXRQChr11g0325591' => 'han', 'HanXRQChr12g0385691' => 'han', 'HanXRQChr13g0387801' => 'han', 'HanXRQChr15g0463011' => 'han', 'Haze_03826' => 'cav', 'Haze_03827' => 'cav', 'Haze_07183' => 'cav', 'Haze_07537' => 'cav', 'Haze_07539' => 'cav', 'Haze_12461' => 'cav', 'Haze_16115' => 'cav', 'Haze_16808' => 'cav', 'Haze_18531' => 'cav', 'Hma1.2p1_0046F.1_g026700' => 'hma', 'Hma1.2p1_0046F.1_g026710' => 'hma', 'Hma1.2p1_0168F.1_g074340' => 'hma', 'Hma1.2p1_0266F.1_g107030' => 'hma', 'Hma1.2p1_0266F.1_g107060' => 'hma', 'Hma1.2p1_0275F.1_g110510' => 'hma', 'Hma1.2p1_0592F.1_g185490' => 'hma', 'Hma1.2p1_0592F.1_g185500' => 'hma', 'Hma1.2p1_0592F.1_g185510' => 'hma', 'Hma1.2p1_0592F.1_g185520' => 'hma', 'Hma1.2p1_0592F.1_g185530' => 'hma', 'Hma1.2p1_0818F.1_g223450' => 'hma', 'HPP92_009708' => 'vpl', 'HPP92_009793' => 'vpl', 'HPP92_009796' => 'vpl', 'HPP92_009797' => 'vpl', 'HPP92_014940' => 'vpl', 'HPP92_014988' => 'vpl', 'Hund02463' => 'sun', 'Hund02760' => 'sun', 'Hund05071' => 'sun', 'Hund10108' => 'sun', 'Hund11204' => 'sun', 'Hund14016' => 'sun', 'Hund16464' => 'sun', 'Lalb_Chr09g0333391' => 'lal', 'Lalb_Chr11g0070461' => 'lal', 'Lalb_Chr12g0201671' => 'lal', 'Lalb_Chr13g0297161' => 'lal', 'Lj1g0002823' => 'lja', 'Lj3C1074T6' => 'lonja', 'Lj4A212T28' => 'lonja', 'Lj4g0005516' => 'lja', 'Lj4g0013705' => 'lja', 'Lj4g0027865' => 'lja', 'Lj5C92G16' => 'lonja', 'Lj5C92T12' => 'lonja', 'Lj7C596T3' => 'lonja', 'Lj9A446G59' => 'lonja', 'Lj9A482G21' => 'lonja', 'Lsat_1_v5_gn_1_28261' => 'lsa', 'Lsat_1_v5_gn_1_28281' => 'lsa', 'Lsat_1_v5_gn_1_32721' => 'lsa', 'Lsat_1_v5_gn_4_151760' => 'lsa', 'Lsat_1_v5_gn_4_2120' => 'lsa', 'Lsat_1_v5_gn_4_75761' => 'lsa', 'Lsat_1_v5_gn_5_10920' => 'lsa', 'Manes.02G099900' => 'mes', 'Manes.11G096200' => 'mes', 'Manes.12G007200' => 'mes', 'Manes.14G048300' => 'mes', 'Manes.17G114700' => 'mes', 'Mapoly0002s0070' => 'mpo', 'Mapoly0029s0099' => 'mpo', 'MBI07_g24742_MAGBIO' => 'mbi', 'MBI10_g27988_MAGBIO' => 'mbi', 'MBI11_g13057_MAGBIO' => 'mbi', 'MD02G1137200' => 'mdo', 'MD06G1137200' => 'mdo', 'MD07G1122300' => 'mdo', 'MD09G1078200' => 'mdo', 'MD13G1123700' => 'mdo', 'MD14G1151900' => 'mdo', 'MD17G1030900' => 'mdo', 'MD17G1068200' => 'mdo', 'MD17G1068600' => 'mdo', 'Medtr3g077540' => 'mtr', 'Medtr4g105530' => 'mtr', 'Medtr8g076580' => 'mtr', 'Medtr8g076590' => 'mtr', 'Medtr8g096410' => 'mtr', 'MELO3C016411.2' => 'cme', 'MELO3C017780.2' => 'cme', 'MELO3C022560.2' => 'cme', 'MELO3C026187.2' => 'cme', 'MELO3C026286.2' => 'cme', 'MELO3C032854.2' => 'cme', 'Migut.H02495' => 'egut', 'Migut.I00561' => 'egut', 'Migut.K01015' => 'egut', 'Migut.K01016' => 'egut', 'Migut.L00743' => 'egut', 'Migut.L00744' => 'egut', 'Migut.L00746' => 'egut', 'Migut.L00798' => 'egut', 'Migut.L00799' => 'egut', 'Migut.N02096' => 'egut', 'MSTRG.11259' => 'ama', 'MSTRG.23142' => 'ama', 'MSTRG.2499' => 'ama', 'Nitab4.5_0000003g0730' => 'nta', 'Nitab4.5_0000137g0020' => 'nta', 'Nitab4.5_0000721g0210' => 'nta', 'Nitab4.5_0000723g0050' => 'nta', 'Nitab4.5_0000913g0070' => 'nta', 'Nitab4.5_0001332g0040' => 'nta', 'Nitab4.5_0001771g0050' => 'nta', 'Nitab4.5_0001918g0050' => 'nta', 'Nitab4.5_0002686g0030' => 'nta', 'Nitab4.5_0003156g0020' => 'nta', 'Nitab4.5_0003383g0040' => 'nta', 'Nitab4.5_0003918g0010' => 'nta', 'Nitab4.5_0006760g0010' => 'nta', 'Nn1g05981' => 'nnu', 'Nn1g06288' => 'nnu', 'Nn3g16371' => 'nnu', 'Nn3g16786' => 'nnu', 'Nn4g22232' => 'nnu', 'Oeu005144.1' => 'oeu', 'Oeu005145.1' => 'oeu', 'Oeu011348.1' => 'oeu', 'Oeu016415.1' => 'oeu', 'Oeu023501.1' => 'oeu', 'Oeu044473.1' => 'oeu', 'Oeu048892.2' => 'oeu', 'Os01g0549200' => 'osa', 'Os02g0469300' => 'osa', 'Os04g0311100' => 'osa', 'Os06g0474900' => 'osa', 'Os10g0181700' => 'osa', 'Os11g0454800' => 'osa', 'Peaxi162Scf00037g00714' => 'pax', 'Peaxi162Scf00084g01217' => 'pax', 'Peaxi162Scf00257g00217' => 'pax', 'Peaxi162Scf00516g00215' => 'pax', 'Peaxi162Scf00689g00123' => 'pax', 'PGR044G2719' => 'pgr', 'PGR083G1360' => 'pgr', 'PGR102G2849' => 'pgr', 'PGR119G2534' => 'pgr', 'PGSC0003DMG400003538' => 'stu', 'PGSC0003DMG400028138' => 'stu', 'PGSC0003DMG400031732' => 'stu', 'PGSC0003DMG400038165' => 'stu', 'Phvul.002G284600' => 'pvu', 'Phvul.003G258200' => 'pvu', 'Phvul.009G176500' => 'pvu', 'Potri.003G167201' => 'ptr', 'Potri.005G118400' => 'ptr', 'Potri.012G089000' => 'ptr', 'Potri.012G102800' => 'ptr', 'Potri.015G079400' => 'ptr', 'Potri.015G100900' => 'ptr', 'Pp3c14_9810' => 'ppa', 'Pp3c15_10450' => 'ppa', 'Pp3c20_19150' => 'ppa', 'Pp3c23_12740' => 'ppa', 'Pp3c23_6310' => 'ppa', 'Pp3c24_3720' => 'ppa', 'Pp3c27_2580' => 'ppa', 'Pp3c9_8990' => 'ppa', 'PRCOL_00002854' => 'pco', 'Prupe.1G221200' => 'ppe', 'Prupe.3G289000' => 'ppe', 'Prupe.5G147000' => 'ppe', 'Prupe.6G157300' => 'ppe', 'Prupe.7G163400' => 'ppe', 'Psat0s2177g0040' => 'psa', 'Psat3g174760' => 'psa', 'Psat3g192160' => 'psa', 'Psat4g058520' => 'psa', 'Psat4g096840' => 'psa', 'Psat7g037320' => 'psa', 'PSO017G1274' => 'pso', 'PSO017G5166' => 'pso', 'PSO063G4558' => 'pso', 'PSO170G4458' => 'pso', 'PSO170G5005' => 'pso', 'PSO210G6156' => 'pso', 'PSO210G6635' => 'pso', 'PSO210G7397' => 'pso', 'PSO210G7700' => 'pso', 'PSO455G0035' => 'pso', 'PSO455G0180' => 'pso', 'PSO478G4515' => 'pso', 'PSO832G1305' => 'pso', 'PSO832G3489' => 'pso', 'QL02p075247' => 'qlo', 'QL03p051148' => 'qlo', 'QL05p010313' => 'qlo', 'QL06p034627' => 'qlo', 'QL10p001889' => 'qlo', 'QL10p010846' => 'qlo', 'RcHm_v2.0_Chr1g0350621' => 'rch', 'RcHm_v2.0_Chr1g0350641' => 'rch', 'RcHm_v2.0_Chr2g0092891' => 'rch', 'RcHm_v2.0_Chr2g0100251' => 'rch', 'RcHm_v2.0_Chr2g0158661' => 'rch', 'RcHm_v2.0_Chr2g0172741' => 'rch', 'RcHm_v2.0_Chr4g0429571' => 'rch', 'RcHm_v2.0_Chr5g0042471' => 'rch', 'RcHm_v2.0_Chr7g0189451' => 'rch', 'Rhsim08G0052000' => 'rsi', 'Rhsim08G0174400' => 'rsi', 'Rhsim08G0193200' => 'rsi', 'Rhsim10G0214800' => 'rsi', 'Rhsim10G0214900' => 'rsi', 'Rhsim10G0215000' => 'rsi', 'Rhsim12G0022900' => 'rsi', 'Rhsim12G0177500' => 'rsi', 'Rhsim12G0177700' => 'rsi', 'Sabra03G0122600' => 'sbr', 'Sabra05G0097400' => 'sbr', 'Sabra12G0064100' => 'sbr', 'Sabra15G0121300' => 'sbr', 'SalBow2G0642' => 'sbo', 'SalBow5G2667' => 'sbo', 'SalBow5G4873' => 'sbo', 'SalBow8G2395' => 'sbo', 'Sc03g0003290' => 'sci', 'Sc10g0010130' => 'sci', 'Sc22g0003650' => 'sci', 'Sed0001603' => 'sed', 'Sed0004259' => 'sed', 'Sed0006789' => 'sed', 'Sed0011838' => 'sed', 'Sed0012964' => 'sed', 'Sed0016383' => 'sed', 'Sed0019010' => 'sed', 'Sed0020188' => 'sed', 'SEGI_04702' => 'sgi', 'SEGI_17231' => 'sgi', 'SEGI_18877' => 'sgi', 'SEGI_25196' => 'sgi', 'SEGI_25515' => 'sgi', 'SEGI_28445' => 'sgi', 'SEGI_37452' => 'sgi', 'SGA_v2.0_scaffold188G40336' => 'sas', 'SGA_v2.0_scaffold228G43247' => 'sas', 'SGA_v2.0_scaffold280G46853' => 'sas', 'SGA_v2.0_scaffold34G13808' => 'sas', 'SGA_v2.0_scaffold40G15576' => 'sas', 'SGA_v2.0_scaffold611G53188' => 'sas', 'SGA_v2.0_scaffold78G25461' => 'sas', 'SGA_v2.0_scaffold90G27888' => 'sas', 'SHI08601' => 'shi', 'SHI08606' => 'shi', 'SHI17117' => 'shi', 'SHI17119' => 'shi', 'SMO118G0201' => 'smo', 'SMO169G0247' => 'smo', 'SMO176G0006' => 'smo', 'SMO176G0015' => 'smo', 'SMO202G0006' => 'smo', 'SMO240G0050' => 'smo', 'SMO286G0009' => 'smo', 'SMO338G0033' => 'smo', 'SMO356G0533' => 'smo', 'SMO364G0382' => 'smo', 'SMO367G0166' => 'smo', 'SMO367G1098' => 'smo', 'Solyc01g009920.3' => 'sly', 'Solyc01g099300.3' => 'sly', 'Solyc02g084700.3' => 'sly', 'Solyc03g097520.3' => 'sly', 'Solyc06g071580.3' => 'sly', 'Solyc10g081760.3' => 'sly', 'Sopen01g005480' => 'spe', 'Sopen01g042850' => 'spe', 'Sopen02g029370' => 'spe', 'Sopen03g028280' => 'spe', 'Sopen06g027870' => 'spe', 'Sopen10g032270' => 'spe', 'Sp5g18180' => 'spa', 'Sp6g12880' => 'spa', 'Sp6g30850' => 'spa', 'Sp7g22960' => 'spa', 'Sp7g34010' => 'spa', 'SpUn1326_0010' => 'spa', 'TAR371G0242' => 'tar', 'TAR622G0638' => 'tar', 'TAR628G1548' => 'tar', 'TAR629G1079' => 'tar', 'TAR629G3413' => 'tar', 'THA.LOC104804249' => 'tha', 'THA.LOC104808315' => 'tha', 'THA.LOC104809238' => 'tha', 'THA.LOC104825484' => 'tha', 'Thecc.01G025500' => 'tca', 'Thecc.03G015800' => 'tca', 'Thecc.03G018000' => 'tca', 'Thecc.03G134800' => 'tca', 'Thecc.04G014700' => 'tca', 'Thhalv10006991m.g' => 'esa', 'Thhalv10012707m.g' => 'esa', 'Thhalv10015739m.g' => 'esa', 'Thhalv10024553m.g' => 'esa', 'Thhalv10024673m.g' => 'esa', 'Thhalv10029187m.g' => 'esa', 'TPR.G12971' => 'tpr', 'TPR.G29396' => 'tpr', 'TPR.G33376' => 'tpr', 'TPR.G35508' => 'tpr', 'TPR.G35516' => 'tpr', 'TPR.G37317' => 'tpr', 'TPR.G37389' => 'tpr', 'TPR.G37523' => 'tpr', 'TPR.G559' => 'tpr', 'TWI14G0070' => 'twi', 'TWI14G0729' => 'twi', 'TWI18G0596' => 'twi', 'TWI39G0780' => 'twi', 'TWI39G0850' => 'twi', 'TWI73G1052' => 'twi', 'unitig_52.g17485' => 'ugi', 'unitig_61.g26355' => 'ugi', 'vmacro01040' => 'vma', 'vmacro16731' => 'vma', 'vmacro18270' => 'vma', 'vmacro19142' => 'vma', 'vmacro19407' => 'vma', 'vmacro19408' => 'vma', 'vmacro21899' => 'vma', 'vmacro21900' => 'vma', 'vmacro21901' => 'vma', 'VMungo0251G0490' => 'vmu', 'VMungo0251G1748' => 'vmu', 'VMungo1309G0421' => 'vmu', 'Zm00001eb086500' => 'zma', 'Zm00001eb150680' => 'zma', 'Zm00001eb162330' => 'zma', 'Zm00001eb203130' => 'zma', 'Zm00001eb369480' => 'zma', 'Zm00001eb382340' => 'zma', 'Zm00001eb416360' => 'zma' ) $gf_id = 'HOM05D000902' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000902' ) $data_identifier = 'HOM05D000902' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 13, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 10, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 6, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 9, 'hma' => (int) 12, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 4, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 6, 'ppa' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 6, 'rch' => (int) 9, 'rsi' => (int) 9, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 12, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 3, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416360' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000902', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '663', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02470' => 'bna', 'A01p16260' => 'bna', 'A02p01680' => 'bna', 'A03p16600' => 'bna', 'A03p55660' => 'bna', 'A03p64160' => 'bna', 'A03p64170' => 'bna', 'A08p31900' => 'bna', 'A09p59530' => 'bna', 'A10p08230' => 'bna', 'A10p25090' => 'bna', 'Aa31LG3G7100' => 'aar', 'Aa31LG3G7110' => 'aar', 'Aa31LG6G13160' => 'aar', 'Aa31LG7G10770' => 'aar', 'Aa31LG7G3830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2723' => 'aag', 'Actinidia08045' => 'ach', 'Actinidia08888' => 'ach', 'Actinidia18333' => 'ach', 'Actinidia19334' => 'ach', 'Actinidia25552' => 'ach', 'Actinidia26089' => 'ach', 'Actinidia30615' => 'ach', 'Actinidia30616' => 'ach', 'Actinidia33083' => 'ach', 'Actinidia35762' => 'ach', 'Ah.02g110620' => 'amhyb', 'Ah.11g046390' => 'amhyb', 'AL1G31670' => 'aly', 'AL6G23730' => 'aly', 'AL7G14740' => 'aly', 'AL7G14750' => 'aly', 'AL7G14760' => 'aly', 'AL7G28220' => 'aly', 'AL8G24940' => 'aly', 'Aqoxy3G01665' => 'aox', 'Aqoxy3G02853' => 'aox', 'Aqoxy5G01513' => 'aox', 'Aqoxy5G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8SKA4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ75LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKDA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0LJZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7REX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZP4YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWX7I5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2QKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS0L9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPCD8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q161UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC7XCF' => 'arhy', 'AT1G19100' => 'ath', 'AT4G24970' => 'ath', 'AT4G36270' => 'ath', 'AT4G36280' => 'ath', 'AT4G36290' => 'ath', 'AT5G13130' => 'ath', 'AT5G50780' => 'ath', 'ATR0582G266' => 'atr', 'ATR0661G195' => 'atr', 'ATR1152G031' => 'atr', 'Atru.chr11.2382' => 'acertr', 'Atru.chr12.2337' => 'acertr', 'Atru.chr3.744' => 'acertr', 'Atru.chr6.1870' => 'acertr', 'Atru.chr9.2515' => 'acertr', 'AUR62004120' => 'cqu', 'AUR62005667' => 'cqu', 'AUR62007634' => 'cqu', 'AUR62008186' => 'cqu', 'AUR62008187' => 'cqu', 'AUR62008188' => 'cqu', 'AUR62027954' => 'cqu', 'AUR62028766' => 'cqu', 'AUR62028767' => 'cqu', 'AUR62028768' => 'cqu', 'AUR62028886' => 'cqu', 'AUR62029563' => 'cqu', 'AUR62038832' => 'cqu', 'BcaB01g04149' => 'bca', 'BcaB03g12940' => 'bca', 'BcaB03g13090' => 'bca', 'BcaB03g14466' => 'bca', 'BcaB05g24035' => 'bca', 'BcaC01g06050' => 'bca', 'BcaC04g19148' => 'bca', 'BcaC04g20761' => 'bca', 'BcaC06g32845' => 'bca', 'BcaC07g41274' => 'bca', 'BcaC09g50827' => 'bca', 'BcaNung00741' => 'bca', 'BcaNung00742' => 'bca', 'BcaNung01859' => 'bca', 'BcaNung03985' => 'bca', 'BcaNung03989' => 'bca', 'BcaNung05661' => 'bca', 'BolC1t00257H' => 'bol', 'BolC1t01956H' => 'bol', 'BolC2t06534H' => 'bol', 'BolC3t14334H' => 'bol', 'BolC5t30451H' => 'bol', 'BolC7t45880H' => 'bol', 'BolC7t46586H' => 'bol', 'BolC8t49301H' => 'bol', 'BolC8t51837H' => 'bol', 'BolC9t56822H' => 'bol', 'BolC9t59235H' => 'bol', 'BraA01t00234Z' => 'bra', 'BraA01t01563Z' => 'bra', 'BraA02t05147Z' => 'bra', 'BraA03t10947Z' => 'bra', 'BraA03t14633Z' => 'bra', 'BraA08t35112Z' => 'bra', 'BraA09t41330Z' => 'bra', 'BraA10t44570Z' => 'bra', 'C01p02670' => 'bna', 'C01p20260' => 'bna', 'C02p05890' => 'bna', 'C03p19530' => 'bna', 'C05p17470' => 'bna', 'C07p53900' => 'bna', 'C07p61630' => 'bna', 'C08p16800' => 'bna', 'C08p42810' => 'bna', 'C09p39480' => 'bna', 'C09p63980' => 'bna', 'CAN.G1001.7' => 'can', 'CAN.G1034.55' => 'can', 'CAN.G143.7' => 'can', 'CAN.G3340.1' => 'can', 'CAN.G358.19' => 'can', 'CAN.G373.2' => 'can', 'CAN.G674.16' => 'can', 'CAN.G674.17' => 'can', 'CAN.G674.18' => 'can', 'CAN.G732.2' => 'can', 'CAN.G732.3' => 'can', 'CAN.G993.39' => 'can', 'CANSAT01G2052' => 'cansat', 'CANSAT80G0070' => 'cansat', 'CANSAT80G0483' => 'cansat', 'CANSAT80G0625' => 'cansat', 'CARHR019690' => 'chi', 'CARHR080280' => 'chi', 'CARHR152750' => 'chi', 'CARHR152760' => 'chi', 'CARHR152770' => 'chi', 'CARHR200340' => 'chi', 'CARHR232370' => 'chi', 'CARHR244670' => 'chi', 'CARHR244680' => 'chi', 'CARHR257520' => 'chi', 'Carub.0001s1872' => 'cru', 'Carub.0006s1130' => 'cru', 'Carub.0007s0396' => 'cru', 'Carub.0007s0397' => 'cru', 'Carub.0007s1608' => 'cru', 'Carub.0008s1068' => 'cru', 'Carub.0008s1077' => 'cru', 'Ca_16158_v3' => 'car', 'Ca_17571_v3' => 'car', 'Ca_21936_v3' => 'car', 'Ca_22350_v3' => 'car', 'CBR_g22445' => 'cbr', 'CBR_g26290' => 'cbr', 'Cc04_g09610' => 'ccan', 'Cc04_g12280' => 'ccan', 'Cc07_g10230' => 'ccan', 'CDE02G0093' => 'cde', 'CDE02G0701' => 'cde', 'CDE04G1050' => 'cde', 'CDE05G1833' => 'cde', 'CDE05G3058' => 'cde', 'CDE05G3380' => 'cde', 'CDE06G0536' => 'cde', 'Cfa006923' => 'cfa', 'Cfa009402' => 'cfa', 'Cfa018751' => 'cfa', 'Cfa019164' => 'cfa', 'Cfa022935' => 'cfa', 'Ciclev10019081m.g' => 'ccl', 'Ciclev10025076m.g' => 'ccl', 'Ciclev10030712m.g' => 'ccl', 'Ciclev10033760m.g' => 'ccl', 'CiPaw.05G105600' => 'cil', 'CiPaw.08G136700' => 'cil', 'CiPaw.11G003900' => 'cil', 'CiPaw.11G023700' => 'cil', 'CiPaw.12G003700' => 'cil', 'ClCG06G017100' => 'cla', 'ClCG06G018110' => 'cla', 'ClCG07G008800' => 'cla', 'ClCG07G015330' => 'cla', 'COL.COLO4_13698' => 'col', 'COL.COLO4_16659' => 'col', 'COL.COLO4_21986' => 'col', 'COL.COLO4_24049' => 'col', 'COL.COLO4_29061' => 'col', 'COL.COLO4_29075' => 'col', 'COL.COLO4_30094' => 'col', 'Cpa.g.c33689' => 'cpa', 'Cpa.g.sc108.39' => 'cpa', 'Cpa.g.sc108.41' => 'cpa', 'Cpa.g.sc1163.1' => 'cpa', 'Cpa.g.sc4.155' => 'cpa', 'Cpa.g.sc6.194' => 'cpa', 'CsaV3_1G000340' => 'csa', 'CsaV3_1G001400' => 'csa', 'CsaV3_4G002220' => 'csa', 'CsaV3_4G005370' => 'csa', 'CSS0007487' => 'camsi', 'CSS0008066' => 'camsi', 'CSS0009120' => 'camsi', 'CSS0015512' => 'camsi', 'CSS0022409' => 'camsi', 'CSS0025358' => 'camsi', 'CSS0044547' => 'camsi', 'DCAR_013057' => 'dca', 'DCAR_015058' => 'dca', 'DCAR_016027' => 'dca', 'DCAR_017327' => 'dca', 'DCAR_020743' => 'dca', 'DCAR_026157' => 'dca', 'DCAR_032339' => 'dca', 'DCAR_032340' => 'dca', 'Dinv11200' => 'din', 'Dinv11201' => 'din', 'Dinv20631' => 'din', 'Dinv23182' => 'din', 'Dinv33466' => 'din', 'Dinv33583' => 'din', 'Dinv38565' => 'din', 'Duzib068G0200' => 'dzi', 'Duzib147G0132' => 'dzi', 'Duzib147G0635' => 'dzi', 'Duzib205G1670' => 'dzi', 'Duzib251G0606' => 'dzi', 'ECA232G3336' => 'eca', 'ECA232G3763' => 'eca', 'ECA232G4845' => 'eca', 'ECA234G1607' => 'eca', 'ECA246G0932' => 'eca', 'ECA247G0781' => 'eca', 'ECA247G1932' => 'eca', 'ECA247G2079' => 'eca', 'ECA247G3338' => 'eca', 'ECA247G4115' => 'eca', 'EL10Ac3g06552' => 'bvu', 'EL10Ac5g10721' => 'bvu', 'EL10Ac5g10722' => 'bvu', 'EL10Ac5g10723' => 'bvu', 'EL10Ac5g11361' => 'bvu', 'EL10Ac6g13553' => 'bvu', 'EL10As8g23872' => 'bvu', 'Eucgr.B00250' => 'egr', 'Eucgr.B00251' => 'egr', 'Eucgr.B03533' => 'egr', 'Eucgr.I02381' => 'egr', 'Eucgr.K02700' => 'egr', 'FAN02G0174' => 'fan', 'FAN02G3146' => 'fan', 'FAN04G1672' => 'fan', 'FAN04G2273' => 'fan', 'FAN05G2791' => 'fan', 'FAN05G4035' => 'fan', 'FAN07G0834' => 'fan', 'FAN08G1198' => 'fan', 'FAN09G4182' => 'fan', 'FAN12G0496' => 'fan', 'FAN13G1027' => 'fan', 'FAN13G2951' => 'fan', 'FAN14G0705' => 'fan', 'FAN14G0720' => 'fan', 'FAN17G0201' => 'fan', 'FAN17G2665' => 'fan', 'FAN18G1456' => 'fan', 'FAN18G1525' => 'fan', 'FAN18G3500' => 'fan', 'FAN28G2670' => 'fan', 'FvH4_1g12391' => 'fve', 'FvH4_4g23220' => 'fve', 'FvH4_5g08810' => 'fve', 'FvH4_5g28960' => 'fve', 'FvH4_6g42820' => 'fve', 'FvH4_6g51110' => 'fve', 'Glyma.02G051802' => 'gma', 'Glyma.04G185300' => 'gma', 'Glyma.05G202900' => 'gma', 'Glyma.08G010300' => 'gma', 'Glyma.16G131900' => 'gma', 'Glyma.17G087900' => 'gma', 'Gohir.A07G048600' => 'ghi', 'Gohir.A11G179000' => 'ghi', 'Gohir.A12G140900' => 'ghi', 'Gohir.A12G140950' => 'ghi', 'Gohir.A12G191700' => 'ghi', 'Gohir.A13G086300' => 'ghi', 'Gohir.D07G052900' => 'ghi', 'Gohir.D11G186600' => 'ghi', 'Gohir.D12G145575' => 'ghi', 'Gohir.D12G145650' => 'ghi', 'Gohir.D12G145725' => 'ghi', 'Gohir.D12G194050' => 'ghi', 'Gohir.D13G091800' => 'ghi', 'Gorai.001G055900' => 'gra', 'Gorai.007G198400' => 'gra', 'Gorai.008G157000' => 'gra', 'Gorai.008G157100' => 'gra', 'Gorai.008G208700' => 'gra', 'Gorai.010G138700' => 'gra', 'GSVIVG01000977001' => 'vvi', 'GSVIVG01007708001' => 'vvi', 'GSVIVG01008587001' => 'vvi', 'GSVIVG01018849001' => 'vvi', 'GSVIVG01032432001' => 'vvi', 'HanXRQChr02g0034131' => 'han', 'HanXRQChr02g0035981' => 'han', 'HanXRQChr02g0035991' => 'han', 'HanXRQChr05g0155611' => 'han', 'HanXRQChr05g0155621' => 'han', 'HanXRQChr08g0236501' => 'han', 'HanXRQChr09g0261321' => 'han', 'HanXRQChr09g0272081' => 'han', 'HanXRQChr10g0310741' => 'han', 'HanXRQChr11g0325591' => 'han', 'HanXRQChr12g0385691' => 'han', 'HanXRQChr13g0387801' => 'han', 'HanXRQChr15g0463011' => 'han', 'Haze_03826' => 'cav', 'Haze_03827' => 'cav', 'Haze_07183' => 'cav', 'Haze_07537' => 'cav', 'Haze_07539' => 'cav', 'Haze_12461' => 'cav', 'Haze_16115' => 'cav', 'Haze_16808' => 'cav', 'Haze_18531' => 'cav', 'Hma1.2p1_0046F.1_g026700' => 'hma', 'Hma1.2p1_0046F.1_g026710' => 'hma', 'Hma1.2p1_0168F.1_g074340' => 'hma', 'Hma1.2p1_0266F.1_g107030' => 'hma', 'Hma1.2p1_0266F.1_g107060' => 'hma', 'Hma1.2p1_0275F.1_g110510' => 'hma', 'Hma1.2p1_0592F.1_g185490' => 'hma', 'Hma1.2p1_0592F.1_g185500' => 'hma', 'Hma1.2p1_0592F.1_g185510' => 'hma', 'Hma1.2p1_0592F.1_g185520' => 'hma', 'Hma1.2p1_0592F.1_g185530' => 'hma', 'Hma1.2p1_0818F.1_g223450' => 'hma', 'HPP92_009708' => 'vpl', 'HPP92_009793' => 'vpl', 'HPP92_009796' => 'vpl', 'HPP92_009797' => 'vpl', 'HPP92_014940' => 'vpl', 'HPP92_014988' => 'vpl', 'Hund02463' => 'sun', 'Hund02760' => 'sun', 'Hund05071' => 'sun', 'Hund10108' => 'sun', 'Hund11204' => 'sun', 'Hund14016' => 'sun', 'Hund16464' => 'sun', 'Lalb_Chr09g0333391' => 'lal', 'Lalb_Chr11g0070461' => 'lal', 'Lalb_Chr12g0201671' => 'lal', 'Lalb_Chr13g0297161' => 'lal', 'Lj1g0002823' => 'lja', 'Lj3C1074T6' => 'lonja', 'Lj4A212T28' => 'lonja', 'Lj4g0005516' => 'lja', 'Lj4g0013705' => 'lja', 'Lj4g0027865' => 'lja', 'Lj5C92G16' => 'lonja', 'Lj5C92T12' => 'lonja', 'Lj7C596T3' => 'lonja', 'Lj9A446G59' => 'lonja', 'Lj9A482G21' => 'lonja', 'Lsat_1_v5_gn_1_28261' => 'lsa', 'Lsat_1_v5_gn_1_28281' => 'lsa', 'Lsat_1_v5_gn_1_32721' => 'lsa', 'Lsat_1_v5_gn_4_151760' => 'lsa', 'Lsat_1_v5_gn_4_2120' => 'lsa', 'Lsat_1_v5_gn_4_75761' => 'lsa', 'Lsat_1_v5_gn_5_10920' => 'lsa', 'Manes.02G099900' => 'mes', 'Manes.11G096200' => 'mes', 'Manes.12G007200' => 'mes', 'Manes.14G048300' => 'mes', 'Manes.17G114700' => 'mes', 'Mapoly0002s0070' => 'mpo', 'Mapoly0029s0099' => 'mpo', 'MBI07_g24742_MAGBIO' => 'mbi', 'MBI10_g27988_MAGBIO' => 'mbi', 'MBI11_g13057_MAGBIO' => 'mbi', 'MD02G1137200' => 'mdo', 'MD06G1137200' => 'mdo', 'MD07G1122300' => 'mdo', 'MD09G1078200' => 'mdo', 'MD13G1123700' => 'mdo', 'MD14G1151900' => 'mdo', 'MD17G1030900' => 'mdo', 'MD17G1068200' => 'mdo', 'MD17G1068600' => 'mdo', 'Medtr3g077540' => 'mtr', 'Medtr4g105530' => 'mtr', 'Medtr8g076580' => 'mtr', 'Medtr8g076590' => 'mtr', 'Medtr8g096410' => 'mtr', 'MELO3C016411.2' => 'cme', 'MELO3C017780.2' => 'cme', 'MELO3C022560.2' => 'cme', 'MELO3C026187.2' => 'cme', 'MELO3C026286.2' => 'cme', 'MELO3C032854.2' => 'cme', 'Migut.H02495' => 'egut', 'Migut.I00561' => 'egut', 'Migut.K01015' => 'egut', 'Migut.K01016' => 'egut', 'Migut.L00743' => 'egut', 'Migut.L00744' => 'egut', 'Migut.L00746' => 'egut', 'Migut.L00798' => 'egut', 'Migut.L00799' => 'egut', 'Migut.N02096' => 'egut', 'MSTRG.11259' => 'ama', 'MSTRG.23142' => 'ama', 'MSTRG.2499' => 'ama', 'Nitab4.5_0000003g0730' => 'nta', 'Nitab4.5_0000137g0020' => 'nta', 'Nitab4.5_0000721g0210' => 'nta', 'Nitab4.5_0000723g0050' => 'nta', 'Nitab4.5_0000913g0070' => 'nta', 'Nitab4.5_0001332g0040' => 'nta', 'Nitab4.5_0001771g0050' => 'nta', 'Nitab4.5_0001918g0050' => 'nta', 'Nitab4.5_0002686g0030' => 'nta', 'Nitab4.5_0003156g0020' => 'nta', 'Nitab4.5_0003383g0040' => 'nta', 'Nitab4.5_0003918g0010' => 'nta', 'Nitab4.5_0006760g0010' => 'nta', 'Nn1g05981' => 'nnu', 'Nn1g06288' => 'nnu', 'Nn3g16371' => 'nnu', 'Nn3g16786' => 'nnu', 'Nn4g22232' => 'nnu', 'Oeu005144.1' => 'oeu', 'Oeu005145.1' => 'oeu', 'Oeu011348.1' => 'oeu', 'Oeu016415.1' => 'oeu', 'Oeu023501.1' => 'oeu', 'Oeu044473.1' => 'oeu', 'Oeu048892.2' => 'oeu', 'Os01g0549200' => 'osa', 'Os02g0469300' => 'osa', 'Os04g0311100' => 'osa', 'Os06g0474900' => 'osa', 'Os10g0181700' => 'osa', 'Os11g0454800' => 'osa', 'Peaxi162Scf00037g00714' => 'pax', 'Peaxi162Scf00084g01217' => 'pax', 'Peaxi162Scf00257g00217' => 'pax', 'Peaxi162Scf00516g00215' => 'pax', 'Peaxi162Scf00689g00123' => 'pax', 'PGR044G2719' => 'pgr', 'PGR083G1360' => 'pgr', 'PGR102G2849' => 'pgr', 'PGR119G2534' => 'pgr', 'PGSC0003DMG400003538' => 'stu', 'PGSC0003DMG400028138' => 'stu', 'PGSC0003DMG400031732' => 'stu', 'PGSC0003DMG400038165' => 'stu', 'Phvul.002G284600' => 'pvu', 'Phvul.003G258200' => 'pvu', 'Phvul.009G176500' => 'pvu', 'Potri.003G167201' => 'ptr', 'Potri.005G118400' => 'ptr', 'Potri.012G089000' => 'ptr', 'Potri.012G102800' => 'ptr', 'Potri.015G079400' => 'ptr', 'Potri.015G100900' => 'ptr', 'Pp3c14_9810' => 'ppa', 'Pp3c15_10450' => 'ppa', 'Pp3c20_19150' => 'ppa', 'Pp3c23_12740' => 'ppa', 'Pp3c23_6310' => 'ppa', 'Pp3c24_3720' => 'ppa', 'Pp3c27_2580' => 'ppa', 'Pp3c9_8990' => 'ppa', 'PRCOL_00002854' => 'pco', 'Prupe.1G221200' => 'ppe', 'Prupe.3G289000' => 'ppe', 'Prupe.5G147000' => 'ppe', 'Prupe.6G157300' => 'ppe', 'Prupe.7G163400' => 'ppe', 'Psat0s2177g0040' => 'psa', 'Psat3g174760' => 'psa', 'Psat3g192160' => 'psa', 'Psat4g058520' => 'psa', 'Psat4g096840' => 'psa', 'Psat7g037320' => 'psa', 'PSO017G1274' => 'pso', 'PSO017G5166' => 'pso', 'PSO063G4558' => 'pso', 'PSO170G4458' => 'pso', 'PSO170G5005' => 'pso', 'PSO210G6156' => 'pso', 'PSO210G6635' => 'pso', 'PSO210G7397' => 'pso', 'PSO210G7700' => 'pso', 'PSO455G0035' => 'pso', 'PSO455G0180' => 'pso', 'PSO478G4515' => 'pso', 'PSO832G1305' => 'pso', 'PSO832G3489' => 'pso', 'QL02p075247' => 'qlo', 'QL03p051148' => 'qlo', 'QL05p010313' => 'qlo', 'QL06p034627' => 'qlo', 'QL10p001889' => 'qlo', 'QL10p010846' => 'qlo', 'RcHm_v2.0_Chr1g0350621' => 'rch', 'RcHm_v2.0_Chr1g0350641' => 'rch', 'RcHm_v2.0_Chr2g0092891' => 'rch', 'RcHm_v2.0_Chr2g0100251' => 'rch', 'RcHm_v2.0_Chr2g0158661' => 'rch', 'RcHm_v2.0_Chr2g0172741' => 'rch', 'RcHm_v2.0_Chr4g0429571' => 'rch', 'RcHm_v2.0_Chr5g0042471' => 'rch', 'RcHm_v2.0_Chr7g0189451' => 'rch', 'Rhsim08G0052000' => 'rsi', 'Rhsim08G0174400' => 'rsi', 'Rhsim08G0193200' => 'rsi', 'Rhsim10G0214800' => 'rsi', 'Rhsim10G0214900' => 'rsi', 'Rhsim10G0215000' => 'rsi', 'Rhsim12G0022900' => 'rsi', 'Rhsim12G0177500' => 'rsi', 'Rhsim12G0177700' => 'rsi', 'Sabra03G0122600' => 'sbr', 'Sabra05G0097400' => 'sbr', 'Sabra12G0064100' => 'sbr', 'Sabra15G0121300' => 'sbr', 'SalBow2G0642' => 'sbo', 'SalBow5G2667' => 'sbo', 'SalBow5G4873' => 'sbo', 'SalBow8G2395' => 'sbo', 'Sc03g0003290' => 'sci', 'Sc10g0010130' => 'sci', 'Sc22g0003650' => 'sci', 'Sed0001603' => 'sed', 'Sed0004259' => 'sed', 'Sed0006789' => 'sed', 'Sed0011838' => 'sed', 'Sed0012964' => 'sed', 'Sed0016383' => 'sed', 'Sed0019010' => 'sed', 'Sed0020188' => 'sed', 'SEGI_04702' => 'sgi', 'SEGI_17231' => 'sgi', 'SEGI_18877' => 'sgi', 'SEGI_25196' => 'sgi', 'SEGI_25515' => 'sgi', 'SEGI_28445' => 'sgi', 'SEGI_37452' => 'sgi', 'SGA_v2.0_scaffold188G40336' => 'sas', 'SGA_v2.0_scaffold228G43247' => 'sas', 'SGA_v2.0_scaffold280G46853' => 'sas', 'SGA_v2.0_scaffold34G13808' => 'sas', 'SGA_v2.0_scaffold40G15576' => 'sas', 'SGA_v2.0_scaffold611G53188' => 'sas', 'SGA_v2.0_scaffold78G25461' => 'sas', 'SGA_v2.0_scaffold90G27888' => 'sas', 'SHI08601' => 'shi', 'SHI08606' => 'shi', 'SHI17117' => 'shi', 'SHI17119' => 'shi', 'SMO118G0201' => 'smo', 'SMO169G0247' => 'smo', 'SMO176G0006' => 'smo', 'SMO176G0015' => 'smo', 'SMO202G0006' => 'smo', 'SMO240G0050' => 'smo', 'SMO286G0009' => 'smo', 'SMO338G0033' => 'smo', 'SMO356G0533' => 'smo', 'SMO364G0382' => 'smo', 'SMO367G0166' => 'smo', 'SMO367G1098' => 'smo', 'Solyc01g009920.3' => 'sly', 'Solyc01g099300.3' => 'sly', 'Solyc02g084700.3' => 'sly', 'Solyc03g097520.3' => 'sly', 'Solyc06g071580.3' => 'sly', 'Solyc10g081760.3' => 'sly', 'Sopen01g005480' => 'spe', 'Sopen01g042850' => 'spe', 'Sopen02g029370' => 'spe', 'Sopen03g028280' => 'spe', 'Sopen06g027870' => 'spe', 'Sopen10g032270' => 'spe', 'Sp5g18180' => 'spa', 'Sp6g12880' => 'spa', 'Sp6g30850' => 'spa', 'Sp7g22960' => 'spa', 'Sp7g34010' => 'spa', 'SpUn1326_0010' => 'spa', 'TAR371G0242' => 'tar', 'TAR622G0638' => 'tar', 'TAR628G1548' => 'tar', 'TAR629G1079' => 'tar', 'TAR629G3413' => 'tar', 'THA.LOC104804249' => 'tha', 'THA.LOC104808315' => 'tha', 'THA.LOC104809238' => 'tha', 'THA.LOC104825484' => 'tha', 'Thecc.01G025500' => 'tca', 'Thecc.03G015800' => 'tca', 'Thecc.03G018000' => 'tca', 'Thecc.03G134800' => 'tca', 'Thecc.04G014700' => 'tca', 'Thhalv10006991m.g' => 'esa', 'Thhalv10012707m.g' => 'esa', 'Thhalv10015739m.g' => 'esa', 'Thhalv10024553m.g' => 'esa', 'Thhalv10024673m.g' => 'esa', 'Thhalv10029187m.g' => 'esa', 'TPR.G12971' => 'tpr', 'TPR.G29396' => 'tpr', 'TPR.G33376' => 'tpr', 'TPR.G35508' => 'tpr', 'TPR.G35516' => 'tpr', 'TPR.G37317' => 'tpr', 'TPR.G37389' => 'tpr', 'TPR.G37523' => 'tpr', 'TPR.G559' => 'tpr', 'TWI14G0070' => 'twi', 'TWI14G0729' => 'twi', 'TWI18G0596' => 'twi', 'TWI39G0780' => 'twi', 'TWI39G0850' => 'twi', 'TWI73G1052' => 'twi', 'unitig_52.g17485' => 'ugi', 'unitig_61.g26355' => 'ugi', 'vmacro01040' => 'vma', 'vmacro16731' => 'vma', 'vmacro18270' => 'vma', 'vmacro19142' => 'vma', 'vmacro19407' => 'vma', 'vmacro19408' => 'vma', 'vmacro21899' => 'vma', 'vmacro21900' => 'vma', 'vmacro21901' => 'vma', 'VMungo0251G0490' => 'vmu', 'VMungo0251G1748' => 'vmu', 'VMungo1309G0421' => 'vmu', 'Zm00001eb086500' => 'zma', 'Zm00001eb150680' => 'zma', 'Zm00001eb162330' => 'zma', 'Zm00001eb203130' => 'zma', 'Zm00001eb369480' => 'zma', 'Zm00001eb382340' => 'zma', 'Zm00001eb416360' => 'zma' ), 'gf_id' => 'HOM05D000902', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000902' ), 'data_identifier' => 'HOM05D000902', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000902', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '663', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02470' => 'bna', 'A01p16260' => 'bna', 'A02p01680' => 'bna', 'A03p16600' => 'bna', 'A03p55660' => 'bna', 'A03p64160' => 'bna', 'A03p64170' => 'bna', 'A08p31900' => 'bna', 'A09p59530' => 'bna', 'A10p08230' => 'bna', 'A10p25090' => 'bna', 'Aa31LG3G7100' => 'aar', 'Aa31LG3G7110' => 'aar', 'Aa31LG6G13160' => 'aar', 'Aa31LG7G10770' => 'aar', 'Aa31LG7G3830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2723' => 'aag', 'Actinidia08045' => 'ach', 'Actinidia08888' => 'ach', 'Actinidia18333' => 'ach', 'Actinidia19334' => 'ach', 'Actinidia25552' => 'ach', 'Actinidia26089' => 'ach', 'Actinidia30615' => 'ach', 'Actinidia30616' => 'ach', 'Actinidia33083' => 'ach', 'Actinidia35762' => 'ach', 'Ah.02g110620' => 'amhyb', 'Ah.11g046390' => 'amhyb', 'AL1G31670' => 'aly', 'AL6G23730' => 'aly', 'AL7G14740' => 'aly', 'AL7G14750' => 'aly', 'AL7G14760' => 'aly', 'AL7G28220' => 'aly', 'AL8G24940' => 'aly', 'Aqoxy3G01665' => 'aox', 'Aqoxy3G02853' => 'aox', 'Aqoxy5G01513' => 'aox', 'Aqoxy5G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8SKA4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ75LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKDA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0LJZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7REX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZP4YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWX7I5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2QKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS0L9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPCD8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q161UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC7XCF' => 'arhy', 'AT1G19100' => 'ath', 'AT4G24970' => 'ath', 'AT4G36270' => 'ath', 'AT4G36280' => 'ath', 'AT4G36290' => 'ath', 'AT5G13130' => 'ath', 'AT5G50780' => 'ath', 'ATR0582G266' => 'atr', 'ATR0661G195' => 'atr', 'ATR1152G031' => 'atr', 'Atru.chr11.2382' => 'acertr', 'Atru.chr12.2337' => 'acertr', 'Atru.chr3.744' => 'acertr', 'Atru.chr6.1870' => 'acertr', 'Atru.chr9.2515' => 'acertr', 'AUR62004120' => 'cqu', 'AUR62005667' => 'cqu', 'AUR62007634' => 'cqu', 'AUR62008186' => 'cqu', 'AUR62008187' => 'cqu', 'AUR62008188' => 'cqu', 'AUR62027954' => 'cqu', 'AUR62028766' => 'cqu', 'AUR62028767' => 'cqu', 'AUR62028768' => 'cqu', 'AUR62028886' => 'cqu', 'AUR62029563' => 'cqu', 'AUR62038832' => 'cqu', 'BcaB01g04149' => 'bca', 'BcaB03g12940' => 'bca', 'BcaB03g13090' => 'bca', 'BcaB03g14466' => 'bca', 'BcaB05g24035' => 'bca', 'BcaC01g06050' => 'bca', 'BcaC04g19148' => 'bca', 'BcaC04g20761' => 'bca', 'BcaC06g32845' => 'bca', 'BcaC07g41274' => 'bca', 'BcaC09g50827' => 'bca', 'BcaNung00741' => 'bca', 'BcaNung00742' => 'bca', 'BcaNung01859' => 'bca', 'BcaNung03985' => 'bca', 'BcaNung03989' => 'bca', 'BcaNung05661' => 'bca', 'BolC1t00257H' => 'bol', 'BolC1t01956H' => 'bol', 'BolC2t06534H' => 'bol', 'BolC3t14334H' => 'bol', 'BolC5t30451H' => 'bol', 'BolC7t45880H' => 'bol', 'BolC7t46586H' => 'bol', 'BolC8t49301H' => 'bol', 'BolC8t51837H' => 'bol', 'BolC9t56822H' => 'bol', 'BolC9t59235H' => 'bol', 'BraA01t00234Z' => 'bra', 'BraA01t01563Z' => 'bra', 'BraA02t05147Z' => 'bra', 'BraA03t10947Z' => 'bra', 'BraA03t14633Z' => 'bra', 'BraA08t35112Z' => 'bra', 'BraA09t41330Z' => 'bra', 'BraA10t44570Z' => 'bra', 'C01p02670' => 'bna', 'C01p20260' => 'bna', 'C02p05890' => 'bna', 'C03p19530' => 'bna', 'C05p17470' => 'bna', 'C07p53900' => 'bna', 'C07p61630' => 'bna', 'C08p16800' => 'bna', 'C08p42810' => 'bna', 'C09p39480' => 'bna', 'C09p63980' => 'bna', 'CAN.G1001.7' => 'can', 'CAN.G1034.55' => 'can', 'CAN.G143.7' => 'can', 'CAN.G3340.1' => 'can', 'CAN.G358.19' => 'can', 'CAN.G373.2' => 'can', 'CAN.G674.16' => 'can', 'CAN.G674.17' => 'can', 'CAN.G674.18' => 'can', 'CAN.G732.2' => 'can', 'CAN.G732.3' => 'can', 'CAN.G993.39' => 'can', 'CANSAT01G2052' => 'cansat', 'CANSAT80G0070' => 'cansat', 'CANSAT80G0483' => 'cansat', 'CANSAT80G0625' => 'cansat', 'CARHR019690' => 'chi', 'CARHR080280' => 'chi', 'CARHR152750' => 'chi', 'CARHR152760' => 'chi', 'CARHR152770' => 'chi', 'CARHR200340' => 'chi', 'CARHR232370' => 'chi', 'CARHR244670' => 'chi', 'CARHR244680' => 'chi', 'CARHR257520' => 'chi', 'Carub.0001s1872' => 'cru', 'Carub.0006s1130' => 'cru', 'Carub.0007s0396' => 'cru', 'Carub.0007s0397' => 'cru', 'Carub.0007s1608' => 'cru', 'Carub.0008s1068' => 'cru', 'Carub.0008s1077' => 'cru', 'Ca_16158_v3' => 'car', 'Ca_17571_v3' => 'car', 'Ca_21936_v3' => 'car', 'Ca_22350_v3' => 'car', 'CBR_g22445' => 'cbr', 'CBR_g26290' => 'cbr', 'Cc04_g09610' => 'ccan', 'Cc04_g12280' => 'ccan', 'Cc07_g10230' => 'ccan', 'CDE02G0093' => 'cde', 'CDE02G0701' => 'cde', 'CDE04G1050' => 'cde', 'CDE05G1833' => 'cde', 'CDE05G3058' => 'cde', 'CDE05G3380' => 'cde', 'CDE06G0536' => 'cde', 'Cfa006923' => 'cfa', 'Cfa009402' => 'cfa', 'Cfa018751' => 'cfa', 'Cfa019164' => 'cfa', 'Cfa022935' => 'cfa', 'Ciclev10019081m.g' => 'ccl', 'Ciclev10025076m.g' => 'ccl', 'Ciclev10030712m.g' => 'ccl', 'Ciclev10033760m.g' => 'ccl', 'CiPaw.05G105600' => 'cil', 'CiPaw.08G136700' => 'cil', 'CiPaw.11G003900' => 'cil', 'CiPaw.11G023700' => 'cil', 'CiPaw.12G003700' => 'cil', 'ClCG06G017100' => 'cla', 'ClCG06G018110' => 'cla', 'ClCG07G008800' => 'cla', 'ClCG07G015330' => 'cla', 'COL.COLO4_13698' => 'col', 'COL.COLO4_16659' => 'col', 'COL.COLO4_21986' => 'col', 'COL.COLO4_24049' => 'col', 'COL.COLO4_29061' => 'col', 'COL.COLO4_29075' => 'col', 'COL.COLO4_30094' => 'col', 'Cpa.g.c33689' => 'cpa', 'Cpa.g.sc108.39' => 'cpa', 'Cpa.g.sc108.41' => 'cpa', 'Cpa.g.sc1163.1' => 'cpa', 'Cpa.g.sc4.155' => 'cpa', 'Cpa.g.sc6.194' => 'cpa', 'CsaV3_1G000340' => 'csa', 'CsaV3_1G001400' => 'csa', 'CsaV3_4G002220' => 'csa', 'CsaV3_4G005370' => 'csa', 'CSS0007487' => 'camsi', 'CSS0008066' => 'camsi', 'CSS0009120' => 'camsi', 'CSS0015512' => 'camsi', 'CSS0022409' => 'camsi', 'CSS0025358' => 'camsi', 'CSS0044547' => 'camsi', 'DCAR_013057' => 'dca', 'DCAR_015058' => 'dca', 'DCAR_016027' => 'dca', 'DCAR_017327' => 'dca', 'DCAR_020743' => 'dca', 'DCAR_026157' => 'dca', 'DCAR_032339' => 'dca', 'DCAR_032340' => 'dca', 'Dinv11200' => 'din', 'Dinv11201' => 'din', 'Dinv20631' => 'din', 'Dinv23182' => 'din', 'Dinv33466' => 'din', 'Dinv33583' => 'din', 'Dinv38565' => 'din', 'Duzib068G0200' => 'dzi', 'Duzib147G0132' => 'dzi', 'Duzib147G0635' => 'dzi', 'Duzib205G1670' => 'dzi', 'Duzib251G0606' => 'dzi', 'ECA232G3336' => 'eca', 'ECA232G3763' => 'eca', 'ECA232G4845' => 'eca', 'ECA234G1607' => 'eca', 'ECA246G0932' => 'eca', 'ECA247G0781' => 'eca', 'ECA247G1932' => 'eca', 'ECA247G2079' => 'eca', 'ECA247G3338' => 'eca', 'ECA247G4115' => 'eca', 'EL10Ac3g06552' => 'bvu', 'EL10Ac5g10721' => 'bvu', 'EL10Ac5g10722' => 'bvu', 'EL10Ac5g10723' => 'bvu', 'EL10Ac5g11361' => 'bvu', 'EL10Ac6g13553' => 'bvu', 'EL10As8g23872' => 'bvu', 'Eucgr.B00250' => 'egr', 'Eucgr.B00251' => 'egr', 'Eucgr.B03533' => 'egr', 'Eucgr.I02381' => 'egr', 'Eucgr.K02700' => 'egr', 'FAN02G0174' => 'fan', 'FAN02G3146' => 'fan', 'FAN04G1672' => 'fan', 'FAN04G2273' => 'fan', 'FAN05G2791' => 'fan', 'FAN05G4035' => 'fan', 'FAN07G0834' => 'fan', 'FAN08G1198' => 'fan', 'FAN09G4182' => 'fan', 'FAN12G0496' => 'fan', 'FAN13G1027' => 'fan', 'FAN13G2951' => 'fan', 'FAN14G0705' => 'fan', 'FAN14G0720' => 'fan', 'FAN17G0201' => 'fan', 'FAN17G2665' => 'fan', 'FAN18G1456' => 'fan', 'FAN18G1525' => 'fan', 'FAN18G3500' => 'fan', 'FAN28G2670' => 'fan', 'FvH4_1g12391' => 'fve', 'FvH4_4g23220' => 'fve', 'FvH4_5g08810' => 'fve', 'FvH4_5g28960' => 'fve', 'FvH4_6g42820' => 'fve', 'FvH4_6g51110' => 'fve', 'Glyma.02G051802' => 'gma', 'Glyma.04G185300' => 'gma', 'Glyma.05G202900' => 'gma', 'Glyma.08G010300' => 'gma', 'Glyma.16G131900' => 'gma', 'Glyma.17G087900' => 'gma', 'Gohir.A07G048600' => 'ghi', 'Gohir.A11G179000' => 'ghi', 'Gohir.A12G140900' => 'ghi', 'Gohir.A12G140950' => 'ghi', 'Gohir.A12G191700' => 'ghi', 'Gohir.A13G086300' => 'ghi', 'Gohir.D07G052900' => 'ghi', 'Gohir.D11G186600' => 'ghi', 'Gohir.D12G145575' => 'ghi', 'Gohir.D12G145650' => 'ghi', 'Gohir.D12G145725' => 'ghi', 'Gohir.D12G194050' => 'ghi', 'Gohir.D13G091800' => 'ghi', 'Gorai.001G055900' => 'gra', 'Gorai.007G198400' => 'gra', 'Gorai.008G157000' => 'gra', 'Gorai.008G157100' => 'gra', 'Gorai.008G208700' => 'gra', 'Gorai.010G138700' => 'gra', 'GSVIVG01000977001' => 'vvi', 'GSVIVG01007708001' => 'vvi', 'GSVIVG01008587001' => 'vvi', 'GSVIVG01018849001' => 'vvi', 'GSVIVG01032432001' => 'vvi', 'HanXRQChr02g0034131' => 'han', 'HanXRQChr02g0035981' => 'han', 'HanXRQChr02g0035991' => 'han', 'HanXRQChr05g0155611' => 'han', 'HanXRQChr05g0155621' => 'han', 'HanXRQChr08g0236501' => 'han', 'HanXRQChr09g0261321' => 'han', 'HanXRQChr09g0272081' => 'han', 'HanXRQChr10g0310741' => 'han', 'HanXRQChr11g0325591' => 'han', 'HanXRQChr12g0385691' => 'han', 'HanXRQChr13g0387801' => 'han', 'HanXRQChr15g0463011' => 'han', 'Haze_03826' => 'cav', 'Haze_03827' => 'cav', 'Haze_07183' => 'cav', 'Haze_07537' => 'cav', 'Haze_07539' => 'cav', 'Haze_12461' => 'cav', 'Haze_16115' => 'cav', 'Haze_16808' => 'cav', 'Haze_18531' => 'cav', 'Hma1.2p1_0046F.1_g026700' => 'hma', 'Hma1.2p1_0046F.1_g026710' => 'hma', 'Hma1.2p1_0168F.1_g074340' => 'hma', 'Hma1.2p1_0266F.1_g107030' => 'hma', 'Hma1.2p1_0266F.1_g107060' => 'hma', 'Hma1.2p1_0275F.1_g110510' => 'hma', 'Hma1.2p1_0592F.1_g185490' => 'hma', 'Hma1.2p1_0592F.1_g185500' => 'hma', 'Hma1.2p1_0592F.1_g185510' => 'hma', 'Hma1.2p1_0592F.1_g185520' => 'hma', 'Hma1.2p1_0592F.1_g185530' => 'hma', 'Hma1.2p1_0818F.1_g223450' => 'hma', 'HPP92_009708' => 'vpl', 'HPP92_009793' => 'vpl', 'HPP92_009796' => 'vpl', 'HPP92_009797' => 'vpl', 'HPP92_014940' => 'vpl', 'HPP92_014988' => 'vpl', 'Hund02463' => 'sun', 'Hund02760' => 'sun', 'Hund05071' => 'sun', 'Hund10108' => 'sun', 'Hund11204' => 'sun', 'Hund14016' => 'sun', 'Hund16464' => 'sun', 'Lalb_Chr09g0333391' => 'lal', 'Lalb_Chr11g0070461' => 'lal', 'Lalb_Chr12g0201671' => 'lal', 'Lalb_Chr13g0297161' => 'lal', 'Lj1g0002823' => 'lja', 'Lj3C1074T6' => 'lonja', 'Lj4A212T28' => 'lonja', 'Lj4g0005516' => 'lja', 'Lj4g0013705' => 'lja', 'Lj4g0027865' => 'lja', 'Lj5C92G16' => 'lonja', 'Lj5C92T12' => 'lonja', 'Lj7C596T3' => 'lonja', 'Lj9A446G59' => 'lonja', 'Lj9A482G21' => 'lonja', 'Lsat_1_v5_gn_1_28261' => 'lsa', 'Lsat_1_v5_gn_1_28281' => 'lsa', 'Lsat_1_v5_gn_1_32721' => 'lsa', 'Lsat_1_v5_gn_4_151760' => 'lsa', 'Lsat_1_v5_gn_4_2120' => 'lsa', 'Lsat_1_v5_gn_4_75761' => 'lsa', 'Lsat_1_v5_gn_5_10920' => 'lsa', 'Manes.02G099900' => 'mes', 'Manes.11G096200' => 'mes', 'Manes.12G007200' => 'mes', 'Manes.14G048300' => 'mes', 'Manes.17G114700' => 'mes', 'Mapoly0002s0070' => 'mpo', 'Mapoly0029s0099' => 'mpo', 'MBI07_g24742_MAGBIO' => 'mbi', 'MBI10_g27988_MAGBIO' => 'mbi', 'MBI11_g13057_MAGBIO' => 'mbi', 'MD02G1137200' => 'mdo', 'MD06G1137200' => 'mdo', 'MD07G1122300' => 'mdo', 'MD09G1078200' => 'mdo', 'MD13G1123700' => 'mdo', 'MD14G1151900' => 'mdo', 'MD17G1030900' => 'mdo', 'MD17G1068200' => 'mdo', 'MD17G1068600' => 'mdo', 'Medtr3g077540' => 'mtr', 'Medtr4g105530' => 'mtr', 'Medtr8g076580' => 'mtr', 'Medtr8g076590' => 'mtr', 'Medtr8g096410' => 'mtr', 'MELO3C016411.2' => 'cme', 'MELO3C017780.2' => 'cme', 'MELO3C022560.2' => 'cme', 'MELO3C026187.2' => 'cme', 'MELO3C026286.2' => 'cme', 'MELO3C032854.2' => 'cme', 'Migut.H02495' => 'egut', 'Migut.I00561' => 'egut', 'Migut.K01015' => 'egut', 'Migut.K01016' => 'egut', 'Migut.L00743' => 'egut', 'Migut.L00744' => 'egut', 'Migut.L00746' => 'egut', 'Migut.L00798' => 'egut', 'Migut.L00799' => 'egut', 'Migut.N02096' => 'egut', 'MSTRG.11259' => 'ama', 'MSTRG.23142' => 'ama', 'MSTRG.2499' => 'ama', 'Nitab4.5_0000003g0730' => 'nta', 'Nitab4.5_0000137g0020' => 'nta', 'Nitab4.5_0000721g0210' => 'nta', 'Nitab4.5_0000723g0050' => 'nta', 'Nitab4.5_0000913g0070' => 'nta', 'Nitab4.5_0001332g0040' => 'nta', 'Nitab4.5_0001771g0050' => 'nta', 'Nitab4.5_0001918g0050' => 'nta', 'Nitab4.5_0002686g0030' => 'nta', 'Nitab4.5_0003156g0020' => 'nta', 'Nitab4.5_0003383g0040' => 'nta', 'Nitab4.5_0003918g0010' => 'nta', 'Nitab4.5_0006760g0010' => 'nta', 'Nn1g05981' => 'nnu', 'Nn1g06288' => 'nnu', 'Nn3g16371' => 'nnu', 'Nn3g16786' => 'nnu', 'Nn4g22232' => 'nnu', 'Oeu005144.1' => 'oeu', 'Oeu005145.1' => 'oeu', 'Oeu011348.1' => 'oeu', 'Oeu016415.1' => 'oeu', 'Oeu023501.1' => 'oeu', 'Oeu044473.1' => 'oeu', 'Oeu048892.2' => 'oeu', 'Os01g0549200' => 'osa', 'Os02g0469300' => 'osa', 'Os04g0311100' => 'osa', 'Os06g0474900' => 'osa', 'Os10g0181700' => 'osa', 'Os11g0454800' => 'osa', 'Peaxi162Scf00037g00714' => 'pax', 'Peaxi162Scf00084g01217' => 'pax', 'Peaxi162Scf00257g00217' => 'pax', 'Peaxi162Scf00516g00215' => 'pax', 'Peaxi162Scf00689g00123' => 'pax', 'PGR044G2719' => 'pgr', 'PGR083G1360' => 'pgr', 'PGR102G2849' => 'pgr', 'PGR119G2534' => 'pgr', 'PGSC0003DMG400003538' => 'stu', 'PGSC0003DMG400028138' => 'stu', 'PGSC0003DMG400031732' => 'stu', 'PGSC0003DMG400038165' => 'stu', 'Phvul.002G284600' => 'pvu', 'Phvul.003G258200' => 'pvu', 'Phvul.009G176500' => 'pvu', 'Potri.003G167201' => 'ptr', 'Potri.005G118400' => 'ptr', 'Potri.012G089000' => 'ptr', 'Potri.012G102800' => 'ptr', 'Potri.015G079400' => 'ptr', 'Potri.015G100900' => 'ptr', 'Pp3c14_9810' => 'ppa', 'Pp3c15_10450' => 'ppa', 'Pp3c20_19150' => 'ppa', 'Pp3c23_12740' => 'ppa', 'Pp3c23_6310' => 'ppa', 'Pp3c24_3720' => 'ppa', 'Pp3c27_2580' => 'ppa', 'Pp3c9_8990' => 'ppa', 'PRCOL_00002854' => 'pco', 'Prupe.1G221200' => 'ppe', 'Prupe.3G289000' => 'ppe', 'Prupe.5G147000' => 'ppe', 'Prupe.6G157300' => 'ppe', 'Prupe.7G163400' => 'ppe', 'Psat0s2177g0040' => 'psa', 'Psat3g174760' => 'psa', 'Psat3g192160' => 'psa', 'Psat4g058520' => 'psa', 'Psat4g096840' => 'psa', 'Psat7g037320' => 'psa', 'PSO017G1274' => 'pso', 'PSO017G5166' => 'pso', 'PSO063G4558' => 'pso', 'PSO170G4458' => 'pso', 'PSO170G5005' => 'pso', 'PSO210G6156' => 'pso', 'PSO210G6635' => 'pso', 'PSO210G7397' => 'pso', 'PSO210G7700' => 'pso', 'PSO455G0035' => 'pso', 'PSO455G0180' => 'pso', 'PSO478G4515' => 'pso', 'PSO832G1305' => 'pso', 'PSO832G3489' => 'pso', 'QL02p075247' => 'qlo', 'QL03p051148' => 'qlo', 'QL05p010313' => 'qlo', 'QL06p034627' => 'qlo', 'QL10p001889' => 'qlo', 'QL10p010846' => 'qlo', 'RcHm_v2.0_Chr1g0350621' => 'rch', 'RcHm_v2.0_Chr1g0350641' => 'rch', 'RcHm_v2.0_Chr2g0092891' => 'rch', 'RcHm_v2.0_Chr2g0100251' => 'rch', 'RcHm_v2.0_Chr2g0158661' => 'rch', 'RcHm_v2.0_Chr2g0172741' => 'rch', 'RcHm_v2.0_Chr4g0429571' => 'rch', 'RcHm_v2.0_Chr5g0042471' => 'rch', 'RcHm_v2.0_Chr7g0189451' => 'rch', 'Rhsim08G0052000' => 'rsi', 'Rhsim08G0174400' => 'rsi', 'Rhsim08G0193200' => 'rsi', 'Rhsim10G0214800' => 'rsi', 'Rhsim10G0214900' => 'rsi', 'Rhsim10G0215000' => 'rsi', 'Rhsim12G0022900' => 'rsi', 'Rhsim12G0177500' => 'rsi', 'Rhsim12G0177700' => 'rsi', 'Sabra03G0122600' => 'sbr', 'Sabra05G0097400' => 'sbr', 'Sabra12G0064100' => 'sbr', 'Sabra15G0121300' => 'sbr', 'SalBow2G0642' => 'sbo', 'SalBow5G2667' => 'sbo', 'SalBow5G4873' => 'sbo', 'SalBow8G2395' => 'sbo', 'Sc03g0003290' => 'sci', 'Sc10g0010130' => 'sci', 'Sc22g0003650' => 'sci', 'Sed0001603' => 'sed', 'Sed0004259' => 'sed', 'Sed0006789' => 'sed', 'Sed0011838' => 'sed', 'Sed0012964' => 'sed', 'Sed0016383' => 'sed', 'Sed0019010' => 'sed', 'Sed0020188' => 'sed', 'SEGI_04702' => 'sgi', 'SEGI_17231' => 'sgi', 'SEGI_18877' => 'sgi', 'SEGI_25196' => 'sgi', 'SEGI_25515' => 'sgi', 'SEGI_28445' => 'sgi', 'SEGI_37452' => 'sgi', 'SGA_v2.0_scaffold188G40336' => 'sas', 'SGA_v2.0_scaffold228G43247' => 'sas', 'SGA_v2.0_scaffold280G46853' => 'sas', 'SGA_v2.0_scaffold34G13808' => 'sas', 'SGA_v2.0_scaffold40G15576' => 'sas', 'SGA_v2.0_scaffold611G53188' => 'sas', 'SGA_v2.0_scaffold78G25461' => 'sas', 'SGA_v2.0_scaffold90G27888' => 'sas', 'SHI08601' => 'shi', 'SHI08606' => 'shi', 'SHI17117' => 'shi', 'SHI17119' => 'shi', 'SMO118G0201' => 'smo', 'SMO169G0247' => 'smo', 'SMO176G0006' => 'smo', 'SMO176G0015' => 'smo', 'SMO202G0006' => 'smo', 'SMO240G0050' => 'smo', 'SMO286G0009' => 'smo', 'SMO338G0033' => 'smo', 'SMO356G0533' => 'smo', 'SMO364G0382' => 'smo', 'SMO367G0166' => 'smo', 'SMO367G1098' => 'smo', 'Solyc01g009920.3' => 'sly', 'Solyc01g099300.3' => 'sly', 'Solyc02g084700.3' => 'sly', 'Solyc03g097520.3' => 'sly', 'Solyc06g071580.3' => 'sly', 'Solyc10g081760.3' => 'sly', 'Sopen01g005480' => 'spe', 'Sopen01g042850' => 'spe', 'Sopen02g029370' => 'spe', 'Sopen03g028280' => 'spe', 'Sopen06g027870' => 'spe', 'Sopen10g032270' => 'spe', 'Sp5g18180' => 'spa', 'Sp6g12880' => 'spa', 'Sp6g30850' => 'spa', 'Sp7g22960' => 'spa', 'Sp7g34010' => 'spa', 'SpUn1326_0010' => 'spa', 'TAR371G0242' => 'tar', 'TAR622G0638' => 'tar', 'TAR628G1548' => 'tar', 'TAR629G1079' => 'tar', 'TAR629G3413' => 'tar', 'THA.LOC104804249' => 'tha', 'THA.LOC104808315' => 'tha', 'THA.LOC104809238' => 'tha', 'THA.LOC104825484' => 'tha', 'Thecc.01G025500' => 'tca', 'Thecc.03G015800' => 'tca', 'Thecc.03G018000' => 'tca', 'Thecc.03G134800' => 'tca', 'Thecc.04G014700' => 'tca', 'Thhalv10006991m.g' => 'esa', 'Thhalv10012707m.g' => 'esa', 'Thhalv10015739m.g' => 'esa', 'Thhalv10024553m.g' => 'esa', 'Thhalv10024673m.g' => 'esa', 'Thhalv10029187m.g' => 'esa', 'TPR.G12971' => 'tpr', 'TPR.G29396' => 'tpr', 'TPR.G33376' => 'tpr', 'TPR.G35508' => 'tpr', 'TPR.G35516' => 'tpr', 'TPR.G37317' => 'tpr', 'TPR.G37389' => 'tpr', 'TPR.G37523' => 'tpr', 'TPR.G559' => 'tpr', 'TWI14G0070' => 'twi', 'TWI14G0729' => 'twi', 'TWI18G0596' => 'twi', 'TWI39G0780' => 'twi', 'TWI39G0850' => 'twi', 'TWI73G1052' => 'twi', 'unitig_52.g17485' => 'ugi', 'unitig_61.g26355' => 'ugi', 'vmacro01040' => 'vma', 'vmacro16731' => 'vma', 'vmacro18270' => 'vma', 'vmacro19142' => 'vma', 'vmacro19407' => 'vma', 'vmacro19408' => 'vma', 'vmacro21899' => 'vma', 'vmacro21900' => 'vma', 'vmacro21901' => 'vma', 'VMungo0251G0490' => 'vmu', 'VMungo0251G1748' => 'vmu', 'VMungo1309G0421' => 'vmu', 'Zm00001eb086500' => 'zma', 'Zm00001eb150680' => 'zma', 'Zm00001eb162330' => 'zma', 'Zm00001eb203130' => 'zma', 'Zm00001eb369480' => 'zma', 'Zm00001eb382340' => 'zma', 'Zm00001eb416360' => 'zma' ) $gf_id = 'HOM05D000902' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000902' ) $data_identifier = 'HOM05D000902' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 13, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 10, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 6, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 9, 'hma' => (int) 12, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 4, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 6, 'ppa' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 6, 'rch' => (int) 9, 'rsi' => (int) 9, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 12, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 3, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416360' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000902', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '663', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02470' => 'bna', 'A01p16260' => 'bna', 'A02p01680' => 'bna', 'A03p16600' => 'bna', 'A03p55660' => 'bna', 'A03p64160' => 'bna', 'A03p64170' => 'bna', 'A08p31900' => 'bna', 'A09p59530' => 'bna', 'A10p08230' => 'bna', 'A10p25090' => 'bna', 'Aa31LG3G7100' => 'aar', 'Aa31LG3G7110' => 'aar', 'Aa31LG6G13160' => 'aar', 'Aa31LG7G10770' => 'aar', 'Aa31LG7G3830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2723' => 'aag', 'Actinidia08045' => 'ach', 'Actinidia08888' => 'ach', 'Actinidia18333' => 'ach', 'Actinidia19334' => 'ach', 'Actinidia25552' => 'ach', 'Actinidia26089' => 'ach', 'Actinidia30615' => 'ach', 'Actinidia30616' => 'ach', 'Actinidia33083' => 'ach', 'Actinidia35762' => 'ach', 'Ah.02g110620' => 'amhyb', 'Ah.11g046390' => 'amhyb', 'AL1G31670' => 'aly', 'AL6G23730' => 'aly', 'AL7G14740' => 'aly', 'AL7G14750' => 'aly', 'AL7G14760' => 'aly', 'AL7G28220' => 'aly', 'AL8G24940' => 'aly', 'Aqoxy3G01665' => 'aox', 'Aqoxy3G02853' => 'aox', 'Aqoxy5G01513' => 'aox', 'Aqoxy5G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8SKA4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ75LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKDA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0LJZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7REX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZP4YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWX7I5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2QKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS0L9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPCD8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q161UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC7XCF' => 'arhy', 'AT1G19100' => 'ath', 'AT4G24970' => 'ath', 'AT4G36270' => 'ath', 'AT4G36280' => 'ath', 'AT4G36290' => 'ath', 'AT5G13130' => 'ath', 'AT5G50780' => 'ath', 'ATR0582G266' => 'atr', 'ATR0661G195' => 'atr', 'ATR1152G031' => 'atr', 'Atru.chr11.2382' => 'acertr', 'Atru.chr12.2337' => 'acertr', 'Atru.chr3.744' => 'acertr', 'Atru.chr6.1870' => 'acertr', 'Atru.chr9.2515' => 'acertr', 'AUR62004120' => 'cqu', 'AUR62005667' => 'cqu', 'AUR62007634' => 'cqu', 'AUR62008186' => 'cqu', 'AUR62008187' => 'cqu', 'AUR62008188' => 'cqu', 'AUR62027954' => 'cqu', 'AUR62028766' => 'cqu', 'AUR62028767' => 'cqu', 'AUR62028768' => 'cqu', 'AUR62028886' => 'cqu', 'AUR62029563' => 'cqu', 'AUR62038832' => 'cqu', 'BcaB01g04149' => 'bca', 'BcaB03g12940' => 'bca', 'BcaB03g13090' => 'bca', 'BcaB03g14466' => 'bca', 'BcaB05g24035' => 'bca', 'BcaC01g06050' => 'bca', 'BcaC04g19148' => 'bca', 'BcaC04g20761' => 'bca', 'BcaC06g32845' => 'bca', 'BcaC07g41274' => 'bca', 'BcaC09g50827' => 'bca', 'BcaNung00741' => 'bca', 'BcaNung00742' => 'bca', 'BcaNung01859' => 'bca', 'BcaNung03985' => 'bca', 'BcaNung03989' => 'bca', 'BcaNung05661' => 'bca', 'BolC1t00257H' => 'bol', 'BolC1t01956H' => 'bol', 'BolC2t06534H' => 'bol', 'BolC3t14334H' => 'bol', 'BolC5t30451H' => 'bol', 'BolC7t45880H' => 'bol', 'BolC7t46586H' => 'bol', 'BolC8t49301H' => 'bol', 'BolC8t51837H' => 'bol', 'BolC9t56822H' => 'bol', 'BolC9t59235H' => 'bol', 'BraA01t00234Z' => 'bra', 'BraA01t01563Z' => 'bra', 'BraA02t05147Z' => 'bra', 'BraA03t10947Z' => 'bra', 'BraA03t14633Z' => 'bra', 'BraA08t35112Z' => 'bra', 'BraA09t41330Z' => 'bra', 'BraA10t44570Z' => 'bra', 'C01p02670' => 'bna', 'C01p20260' => 'bna', 'C02p05890' => 'bna', 'C03p19530' => 'bna', 'C05p17470' => 'bna', 'C07p53900' => 'bna', 'C07p61630' => 'bna', 'C08p16800' => 'bna', 'C08p42810' => 'bna', 'C09p39480' => 'bna', 'C09p63980' => 'bna', 'CAN.G1001.7' => 'can', 'CAN.G1034.55' => 'can', 'CAN.G143.7' => 'can', 'CAN.G3340.1' => 'can', 'CAN.G358.19' => 'can', 'CAN.G373.2' => 'can', 'CAN.G674.16' => 'can', 'CAN.G674.17' => 'can', 'CAN.G674.18' => 'can', 'CAN.G732.2' => 'can', 'CAN.G732.3' => 'can', 'CAN.G993.39' => 'can', 'CANSAT01G2052' => 'cansat', 'CANSAT80G0070' => 'cansat', 'CANSAT80G0483' => 'cansat', 'CANSAT80G0625' => 'cansat', 'CARHR019690' => 'chi', 'CARHR080280' => 'chi', 'CARHR152750' => 'chi', 'CARHR152760' => 'chi', 'CARHR152770' => 'chi', 'CARHR200340' => 'chi', 'CARHR232370' => 'chi', 'CARHR244670' => 'chi', 'CARHR244680' => 'chi', 'CARHR257520' => 'chi', 'Carub.0001s1872' => 'cru', 'Carub.0006s1130' => 'cru', 'Carub.0007s0396' => 'cru', 'Carub.0007s0397' => 'cru', 'Carub.0007s1608' => 'cru', 'Carub.0008s1068' => 'cru', 'Carub.0008s1077' => 'cru', 'Ca_16158_v3' => 'car', 'Ca_17571_v3' => 'car', 'Ca_21936_v3' => 'car', 'Ca_22350_v3' => 'car', 'CBR_g22445' => 'cbr', 'CBR_g26290' => 'cbr', 'Cc04_g09610' => 'ccan', 'Cc04_g12280' => 'ccan', 'Cc07_g10230' => 'ccan', 'CDE02G0093' => 'cde', 'CDE02G0701' => 'cde', 'CDE04G1050' => 'cde', 'CDE05G1833' => 'cde', 'CDE05G3058' => 'cde', 'CDE05G3380' => 'cde', 'CDE06G0536' => 'cde', 'Cfa006923' => 'cfa', 'Cfa009402' => 'cfa', 'Cfa018751' => 'cfa', 'Cfa019164' => 'cfa', 'Cfa022935' => 'cfa', 'Ciclev10019081m.g' => 'ccl', 'Ciclev10025076m.g' => 'ccl', 'Ciclev10030712m.g' => 'ccl', 'Ciclev10033760m.g' => 'ccl', 'CiPaw.05G105600' => 'cil', 'CiPaw.08G136700' => 'cil', 'CiPaw.11G003900' => 'cil', 'CiPaw.11G023700' => 'cil', 'CiPaw.12G003700' => 'cil', 'ClCG06G017100' => 'cla', 'ClCG06G018110' => 'cla', 'ClCG07G008800' => 'cla', 'ClCG07G015330' => 'cla', 'COL.COLO4_13698' => 'col', 'COL.COLO4_16659' => 'col', 'COL.COLO4_21986' => 'col', 'COL.COLO4_24049' => 'col', 'COL.COLO4_29061' => 'col', 'COL.COLO4_29075' => 'col', 'COL.COLO4_30094' => 'col', 'Cpa.g.c33689' => 'cpa', 'Cpa.g.sc108.39' => 'cpa', 'Cpa.g.sc108.41' => 'cpa', 'Cpa.g.sc1163.1' => 'cpa', 'Cpa.g.sc4.155' => 'cpa', 'Cpa.g.sc6.194' => 'cpa', 'CsaV3_1G000340' => 'csa', 'CsaV3_1G001400' => 'csa', 'CsaV3_4G002220' => 'csa', 'CsaV3_4G005370' => 'csa', 'CSS0007487' => 'camsi', 'CSS0008066' => 'camsi', 'CSS0009120' => 'camsi', 'CSS0015512' => 'camsi', 'CSS0022409' => 'camsi', 'CSS0025358' => 'camsi', 'CSS0044547' => 'camsi', 'DCAR_013057' => 'dca', 'DCAR_015058' => 'dca', 'DCAR_016027' => 'dca', 'DCAR_017327' => 'dca', 'DCAR_020743' => 'dca', 'DCAR_026157' => 'dca', 'DCAR_032339' => 'dca', 'DCAR_032340' => 'dca', 'Dinv11200' => 'din', 'Dinv11201' => 'din', 'Dinv20631' => 'din', 'Dinv23182' => 'din', 'Dinv33466' => 'din', 'Dinv33583' => 'din', 'Dinv38565' => 'din', 'Duzib068G0200' => 'dzi', 'Duzib147G0132' => 'dzi', 'Duzib147G0635' => 'dzi', 'Duzib205G1670' => 'dzi', 'Duzib251G0606' => 'dzi', 'ECA232G3336' => 'eca', 'ECA232G3763' => 'eca', 'ECA232G4845' => 'eca', 'ECA234G1607' => 'eca', 'ECA246G0932' => 'eca', 'ECA247G0781' => 'eca', 'ECA247G1932' => 'eca', 'ECA247G2079' => 'eca', 'ECA247G3338' => 'eca', 'ECA247G4115' => 'eca', 'EL10Ac3g06552' => 'bvu', 'EL10Ac5g10721' => 'bvu', 'EL10Ac5g10722' => 'bvu', 'EL10Ac5g10723' => 'bvu', 'EL10Ac5g11361' => 'bvu', 'EL10Ac6g13553' => 'bvu', 'EL10As8g23872' => 'bvu', 'Eucgr.B00250' => 'egr', 'Eucgr.B00251' => 'egr', 'Eucgr.B03533' => 'egr', 'Eucgr.I02381' => 'egr', 'Eucgr.K02700' => 'egr', 'FAN02G0174' => 'fan', 'FAN02G3146' => 'fan', 'FAN04G1672' => 'fan', 'FAN04G2273' => 'fan', 'FAN05G2791' => 'fan', 'FAN05G4035' => 'fan', 'FAN07G0834' => 'fan', 'FAN08G1198' => 'fan', 'FAN09G4182' => 'fan', 'FAN12G0496' => 'fan', 'FAN13G1027' => 'fan', 'FAN13G2951' => 'fan', 'FAN14G0705' => 'fan', 'FAN14G0720' => 'fan', 'FAN17G0201' => 'fan', 'FAN17G2665' => 'fan', 'FAN18G1456' => 'fan', 'FAN18G1525' => 'fan', 'FAN18G3500' => 'fan', 'FAN28G2670' => 'fan', 'FvH4_1g12391' => 'fve', 'FvH4_4g23220' => 'fve', 'FvH4_5g08810' => 'fve', 'FvH4_5g28960' => 'fve', 'FvH4_6g42820' => 'fve', 'FvH4_6g51110' => 'fve', 'Glyma.02G051802' => 'gma', 'Glyma.04G185300' => 'gma', 'Glyma.05G202900' => 'gma', 'Glyma.08G010300' => 'gma', 'Glyma.16G131900' => 'gma', 'Glyma.17G087900' => 'gma', 'Gohir.A07G048600' => 'ghi', 'Gohir.A11G179000' => 'ghi', 'Gohir.A12G140900' => 'ghi', 'Gohir.A12G140950' => 'ghi', 'Gohir.A12G191700' => 'ghi', 'Gohir.A13G086300' => 'ghi', 'Gohir.D07G052900' => 'ghi', 'Gohir.D11G186600' => 'ghi', 'Gohir.D12G145575' => 'ghi', 'Gohir.D12G145650' => 'ghi', 'Gohir.D12G145725' => 'ghi', 'Gohir.D12G194050' => 'ghi', 'Gohir.D13G091800' => 'ghi', 'Gorai.001G055900' => 'gra', 'Gorai.007G198400' => 'gra', 'Gorai.008G157000' => 'gra', 'Gorai.008G157100' => 'gra', 'Gorai.008G208700' => 'gra', 'Gorai.010G138700' => 'gra', 'GSVIVG01000977001' => 'vvi', 'GSVIVG01007708001' => 'vvi', 'GSVIVG01008587001' => 'vvi', 'GSVIVG01018849001' => 'vvi', 'GSVIVG01032432001' => 'vvi', 'HanXRQChr02g0034131' => 'han', 'HanXRQChr02g0035981' => 'han', 'HanXRQChr02g0035991' => 'han', 'HanXRQChr05g0155611' => 'han', 'HanXRQChr05g0155621' => 'han', 'HanXRQChr08g0236501' => 'han', 'HanXRQChr09g0261321' => 'han', 'HanXRQChr09g0272081' => 'han', 'HanXRQChr10g0310741' => 'han', 'HanXRQChr11g0325591' => 'han', 'HanXRQChr12g0385691' => 'han', 'HanXRQChr13g0387801' => 'han', 'HanXRQChr15g0463011' => 'han', 'Haze_03826' => 'cav', 'Haze_03827' => 'cav', 'Haze_07183' => 'cav', 'Haze_07537' => 'cav', 'Haze_07539' => 'cav', 'Haze_12461' => 'cav', 'Haze_16115' => 'cav', 'Haze_16808' => 'cav', 'Haze_18531' => 'cav', 'Hma1.2p1_0046F.1_g026700' => 'hma', 'Hma1.2p1_0046F.1_g026710' => 'hma', 'Hma1.2p1_0168F.1_g074340' => 'hma', 'Hma1.2p1_0266F.1_g107030' => 'hma', 'Hma1.2p1_0266F.1_g107060' => 'hma', 'Hma1.2p1_0275F.1_g110510' => 'hma', 'Hma1.2p1_0592F.1_g185490' => 'hma', 'Hma1.2p1_0592F.1_g185500' => 'hma', 'Hma1.2p1_0592F.1_g185510' => 'hma', 'Hma1.2p1_0592F.1_g185520' => 'hma', 'Hma1.2p1_0592F.1_g185530' => 'hma', 'Hma1.2p1_0818F.1_g223450' => 'hma', 'HPP92_009708' => 'vpl', 'HPP92_009793' => 'vpl', 'HPP92_009796' => 'vpl', 'HPP92_009797' => 'vpl', 'HPP92_014940' => 'vpl', 'HPP92_014988' => 'vpl', 'Hund02463' => 'sun', 'Hund02760' => 'sun', 'Hund05071' => 'sun', 'Hund10108' => 'sun', 'Hund11204' => 'sun', 'Hund14016' => 'sun', 'Hund16464' => 'sun', 'Lalb_Chr09g0333391' => 'lal', 'Lalb_Chr11g0070461' => 'lal', 'Lalb_Chr12g0201671' => 'lal', 'Lalb_Chr13g0297161' => 'lal', 'Lj1g0002823' => 'lja', 'Lj3C1074T6' => 'lonja', 'Lj4A212T28' => 'lonja', 'Lj4g0005516' => 'lja', 'Lj4g0013705' => 'lja', 'Lj4g0027865' => 'lja', 'Lj5C92G16' => 'lonja', 'Lj5C92T12' => 'lonja', 'Lj7C596T3' => 'lonja', 'Lj9A446G59' => 'lonja', 'Lj9A482G21' => 'lonja', 'Lsat_1_v5_gn_1_28261' => 'lsa', 'Lsat_1_v5_gn_1_28281' => 'lsa', 'Lsat_1_v5_gn_1_32721' => 'lsa', 'Lsat_1_v5_gn_4_151760' => 'lsa', 'Lsat_1_v5_gn_4_2120' => 'lsa', 'Lsat_1_v5_gn_4_75761' => 'lsa', 'Lsat_1_v5_gn_5_10920' => 'lsa', 'Manes.02G099900' => 'mes', 'Manes.11G096200' => 'mes', 'Manes.12G007200' => 'mes', 'Manes.14G048300' => 'mes', 'Manes.17G114700' => 'mes', 'Mapoly0002s0070' => 'mpo', 'Mapoly0029s0099' => 'mpo', 'MBI07_g24742_MAGBIO' => 'mbi', 'MBI10_g27988_MAGBIO' => 'mbi', 'MBI11_g13057_MAGBIO' => 'mbi', 'MD02G1137200' => 'mdo', 'MD06G1137200' => 'mdo', 'MD07G1122300' => 'mdo', 'MD09G1078200' => 'mdo', 'MD13G1123700' => 'mdo', 'MD14G1151900' => 'mdo', 'MD17G1030900' => 'mdo', 'MD17G1068200' => 'mdo', 'MD17G1068600' => 'mdo', 'Medtr3g077540' => 'mtr', 'Medtr4g105530' => 'mtr', 'Medtr8g076580' => 'mtr', 'Medtr8g076590' => 'mtr', 'Medtr8g096410' => 'mtr', 'MELO3C016411.2' => 'cme', 'MELO3C017780.2' => 'cme', 'MELO3C022560.2' => 'cme', 'MELO3C026187.2' => 'cme', 'MELO3C026286.2' => 'cme', 'MELO3C032854.2' => 'cme', 'Migut.H02495' => 'egut', 'Migut.I00561' => 'egut', 'Migut.K01015' => 'egut', 'Migut.K01016' => 'egut', 'Migut.L00743' => 'egut', 'Migut.L00744' => 'egut', 'Migut.L00746' => 'egut', 'Migut.L00798' => 'egut', 'Migut.L00799' => 'egut', 'Migut.N02096' => 'egut', 'MSTRG.11259' => 'ama', 'MSTRG.23142' => 'ama', 'MSTRG.2499' => 'ama', 'Nitab4.5_0000003g0730' => 'nta', 'Nitab4.5_0000137g0020' => 'nta', 'Nitab4.5_0000721g0210' => 'nta', 'Nitab4.5_0000723g0050' => 'nta', 'Nitab4.5_0000913g0070' => 'nta', 'Nitab4.5_0001332g0040' => 'nta', 'Nitab4.5_0001771g0050' => 'nta', 'Nitab4.5_0001918g0050' => 'nta', 'Nitab4.5_0002686g0030' => 'nta', 'Nitab4.5_0003156g0020' => 'nta', 'Nitab4.5_0003383g0040' => 'nta', 'Nitab4.5_0003918g0010' => 'nta', 'Nitab4.5_0006760g0010' => 'nta', 'Nn1g05981' => 'nnu', 'Nn1g06288' => 'nnu', 'Nn3g16371' => 'nnu', 'Nn3g16786' => 'nnu', 'Nn4g22232' => 'nnu', 'Oeu005144.1' => 'oeu', 'Oeu005145.1' => 'oeu', 'Oeu011348.1' => 'oeu', 'Oeu016415.1' => 'oeu', 'Oeu023501.1' => 'oeu', 'Oeu044473.1' => 'oeu', 'Oeu048892.2' => 'oeu', 'Os01g0549200' => 'osa', 'Os02g0469300' => 'osa', 'Os04g0311100' => 'osa', 'Os06g0474900' => 'osa', 'Os10g0181700' => 'osa', 'Os11g0454800' => 'osa', 'Peaxi162Scf00037g00714' => 'pax', 'Peaxi162Scf00084g01217' => 'pax', 'Peaxi162Scf00257g00217' => 'pax', 'Peaxi162Scf00516g00215' => 'pax', 'Peaxi162Scf00689g00123' => 'pax', 'PGR044G2719' => 'pgr', 'PGR083G1360' => 'pgr', 'PGR102G2849' => 'pgr', 'PGR119G2534' => 'pgr', 'PGSC0003DMG400003538' => 'stu', 'PGSC0003DMG400028138' => 'stu', 'PGSC0003DMG400031732' => 'stu', 'PGSC0003DMG400038165' => 'stu', 'Phvul.002G284600' => 'pvu', 'Phvul.003G258200' => 'pvu', 'Phvul.009G176500' => 'pvu', 'Potri.003G167201' => 'ptr', 'Potri.005G118400' => 'ptr', 'Potri.012G089000' => 'ptr', 'Potri.012G102800' => 'ptr', 'Potri.015G079400' => 'ptr', 'Potri.015G100900' => 'ptr', 'Pp3c14_9810' => 'ppa', 'Pp3c15_10450' => 'ppa', 'Pp3c20_19150' => 'ppa', 'Pp3c23_12740' => 'ppa', 'Pp3c23_6310' => 'ppa', 'Pp3c24_3720' => 'ppa', 'Pp3c27_2580' => 'ppa', 'Pp3c9_8990' => 'ppa', 'PRCOL_00002854' => 'pco', 'Prupe.1G221200' => 'ppe', 'Prupe.3G289000' => 'ppe', 'Prupe.5G147000' => 'ppe', 'Prupe.6G157300' => 'ppe', 'Prupe.7G163400' => 'ppe', 'Psat0s2177g0040' => 'psa', 'Psat3g174760' => 'psa', 'Psat3g192160' => 'psa', 'Psat4g058520' => 'psa', 'Psat4g096840' => 'psa', 'Psat7g037320' => 'psa', 'PSO017G1274' => 'pso', 'PSO017G5166' => 'pso', 'PSO063G4558' => 'pso', 'PSO170G4458' => 'pso', 'PSO170G5005' => 'pso', 'PSO210G6156' => 'pso', 'PSO210G6635' => 'pso', 'PSO210G7397' => 'pso', 'PSO210G7700' => 'pso', 'PSO455G0035' => 'pso', 'PSO455G0180' => 'pso', 'PSO478G4515' => 'pso', 'PSO832G1305' => 'pso', 'PSO832G3489' => 'pso', 'QL02p075247' => 'qlo', 'QL03p051148' => 'qlo', 'QL05p010313' => 'qlo', 'QL06p034627' => 'qlo', 'QL10p001889' => 'qlo', 'QL10p010846' => 'qlo', 'RcHm_v2.0_Chr1g0350621' => 'rch', 'RcHm_v2.0_Chr1g0350641' => 'rch', 'RcHm_v2.0_Chr2g0092891' => 'rch', 'RcHm_v2.0_Chr2g0100251' => 'rch', 'RcHm_v2.0_Chr2g0158661' => 'rch', 'RcHm_v2.0_Chr2g0172741' => 'rch', 'RcHm_v2.0_Chr4g0429571' => 'rch', 'RcHm_v2.0_Chr5g0042471' => 'rch', 'RcHm_v2.0_Chr7g0189451' => 'rch', 'Rhsim08G0052000' => 'rsi', 'Rhsim08G0174400' => 'rsi', 'Rhsim08G0193200' => 'rsi', 'Rhsim10G0214800' => 'rsi', 'Rhsim10G0214900' => 'rsi', 'Rhsim10G0215000' => 'rsi', 'Rhsim12G0022900' => 'rsi', 'Rhsim12G0177500' => 'rsi', 'Rhsim12G0177700' => 'rsi', 'Sabra03G0122600' => 'sbr', 'Sabra05G0097400' => 'sbr', 'Sabra12G0064100' => 'sbr', 'Sabra15G0121300' => 'sbr', 'SalBow2G0642' => 'sbo', 'SalBow5G2667' => 'sbo', 'SalBow5G4873' => 'sbo', 'SalBow8G2395' => 'sbo', 'Sc03g0003290' => 'sci', 'Sc10g0010130' => 'sci', 'Sc22g0003650' => 'sci', 'Sed0001603' => 'sed', 'Sed0004259' => 'sed', 'Sed0006789' => 'sed', 'Sed0011838' => 'sed', 'Sed0012964' => 'sed', 'Sed0016383' => 'sed', 'Sed0019010' => 'sed', 'Sed0020188' => 'sed', 'SEGI_04702' => 'sgi', 'SEGI_17231' => 'sgi', 'SEGI_18877' => 'sgi', 'SEGI_25196' => 'sgi', 'SEGI_25515' => 'sgi', 'SEGI_28445' => 'sgi', 'SEGI_37452' => 'sgi', 'SGA_v2.0_scaffold188G40336' => 'sas', 'SGA_v2.0_scaffold228G43247' => 'sas', 'SGA_v2.0_scaffold280G46853' => 'sas', 'SGA_v2.0_scaffold34G13808' => 'sas', 'SGA_v2.0_scaffold40G15576' => 'sas', 'SGA_v2.0_scaffold611G53188' => 'sas', 'SGA_v2.0_scaffold78G25461' => 'sas', 'SGA_v2.0_scaffold90G27888' => 'sas', 'SHI08601' => 'shi', 'SHI08606' => 'shi', 'SHI17117' => 'shi', 'SHI17119' => 'shi', 'SMO118G0201' => 'smo', 'SMO169G0247' => 'smo', 'SMO176G0006' => 'smo', 'SMO176G0015' => 'smo', 'SMO202G0006' => 'smo', 'SMO240G0050' => 'smo', 'SMO286G0009' => 'smo', 'SMO338G0033' => 'smo', 'SMO356G0533' => 'smo', 'SMO364G0382' => 'smo', 'SMO367G0166' => 'smo', 'SMO367G1098' => 'smo', 'Solyc01g009920.3' => 'sly', 'Solyc01g099300.3' => 'sly', 'Solyc02g084700.3' => 'sly', 'Solyc03g097520.3' => 'sly', 'Solyc06g071580.3' => 'sly', 'Solyc10g081760.3' => 'sly', 'Sopen01g005480' => 'spe', 'Sopen01g042850' => 'spe', 'Sopen02g029370' => 'spe', 'Sopen03g028280' => 'spe', 'Sopen06g027870' => 'spe', 'Sopen10g032270' => 'spe', 'Sp5g18180' => 'spa', 'Sp6g12880' => 'spa', 'Sp6g30850' => 'spa', 'Sp7g22960' => 'spa', 'Sp7g34010' => 'spa', 'SpUn1326_0010' => 'spa', 'TAR371G0242' => 'tar', 'TAR622G0638' => 'tar', 'TAR628G1548' => 'tar', 'TAR629G1079' => 'tar', 'TAR629G3413' => 'tar', 'THA.LOC104804249' => 'tha', 'THA.LOC104808315' => 'tha', 'THA.LOC104809238' => 'tha', 'THA.LOC104825484' => 'tha', 'Thecc.01G025500' => 'tca', 'Thecc.03G015800' => 'tca', 'Thecc.03G018000' => 'tca', 'Thecc.03G134800' => 'tca', 'Thecc.04G014700' => 'tca', 'Thhalv10006991m.g' => 'esa', 'Thhalv10012707m.g' => 'esa', 'Thhalv10015739m.g' => 'esa', 'Thhalv10024553m.g' => 'esa', 'Thhalv10024673m.g' => 'esa', 'Thhalv10029187m.g' => 'esa', 'TPR.G12971' => 'tpr', 'TPR.G29396' => 'tpr', 'TPR.G33376' => 'tpr', 'TPR.G35508' => 'tpr', 'TPR.G35516' => 'tpr', 'TPR.G37317' => 'tpr', 'TPR.G37389' => 'tpr', 'TPR.G37523' => 'tpr', 'TPR.G559' => 'tpr', 'TWI14G0070' => 'twi', 'TWI14G0729' => 'twi', 'TWI18G0596' => 'twi', 'TWI39G0780' => 'twi', 'TWI39G0850' => 'twi', 'TWI73G1052' => 'twi', 'unitig_52.g17485' => 'ugi', 'unitig_61.g26355' => 'ugi', 'vmacro01040' => 'vma', 'vmacro16731' => 'vma', 'vmacro18270' => 'vma', 'vmacro19142' => 'vma', 'vmacro19407' => 'vma', 'vmacro19408' => 'vma', 'vmacro21899' => 'vma', 'vmacro21900' => 'vma', 'vmacro21901' => 'vma', 'VMungo0251G0490' => 'vmu', 'VMungo0251G1748' => 'vmu', 'VMungo1309G0421' => 'vmu', 'Zm00001eb086500' => 'zma', 'Zm00001eb150680' => 'zma', 'Zm00001eb162330' => 'zma', 'Zm00001eb203130' => 'zma', 'Zm00001eb369480' => 'zma', 'Zm00001eb382340' => 'zma', 'Zm00001eb416360' => 'zma' ), 'gf_id' => 'HOM05D000902', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000902' ), 'data_identifier' => 'HOM05D000902', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000902', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '663', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02470' => 'bna', 'A01p16260' => 'bna', 'A02p01680' => 'bna', 'A03p16600' => 'bna', 'A03p55660' => 'bna', 'A03p64160' => 'bna', 'A03p64170' => 'bna', 'A08p31900' => 'bna', 'A09p59530' => 'bna', 'A10p08230' => 'bna', 'A10p25090' => 'bna', 'Aa31LG3G7100' => 'aar', 'Aa31LG3G7110' => 'aar', 'Aa31LG6G13160' => 'aar', 'Aa31LG7G10770' => 'aar', 'Aa31LG7G3830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2723' => 'aag', 'Actinidia08045' => 'ach', 'Actinidia08888' => 'ach', 'Actinidia18333' => 'ach', 'Actinidia19334' => 'ach', 'Actinidia25552' => 'ach', 'Actinidia26089' => 'ach', 'Actinidia30615' => 'ach', 'Actinidia30616' => 'ach', 'Actinidia33083' => 'ach', 'Actinidia35762' => 'ach', 'Ah.02g110620' => 'amhyb', 'Ah.11g046390' => 'amhyb', 'AL1G31670' => 'aly', 'AL6G23730' => 'aly', 'AL7G14740' => 'aly', 'AL7G14750' => 'aly', 'AL7G14760' => 'aly', 'AL7G28220' => 'aly', 'AL8G24940' => 'aly', 'Aqoxy3G01665' => 'aox', 'Aqoxy3G02853' => 'aox', 'Aqoxy5G01513' => 'aox', 'Aqoxy5G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8SKA4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ75LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKDA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0LJZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7REX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZP4YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWX7I5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2QKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS0L9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPCD8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q161UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC7XCF' => 'arhy', 'AT1G19100' => 'ath', 'AT4G24970' => 'ath', 'AT4G36270' => 'ath', 'AT4G36280' => 'ath', 'AT4G36290' => 'ath', 'AT5G13130' => 'ath', 'AT5G50780' => 'ath', 'ATR0582G266' => 'atr', 'ATR0661G195' => 'atr', 'ATR1152G031' => 'atr', 'Atru.chr11.2382' => 'acertr', 'Atru.chr12.2337' => 'acertr', 'Atru.chr3.744' => 'acertr', 'Atru.chr6.1870' => 'acertr', 'Atru.chr9.2515' => 'acertr', 'AUR62004120' => 'cqu', 'AUR62005667' => 'cqu', 'AUR62007634' => 'cqu', 'AUR62008186' => 'cqu', 'AUR62008187' => 'cqu', 'AUR62008188' => 'cqu', 'AUR62027954' => 'cqu', 'AUR62028766' => 'cqu', 'AUR62028767' => 'cqu', 'AUR62028768' => 'cqu', 'AUR62028886' => 'cqu', 'AUR62029563' => 'cqu', 'AUR62038832' => 'cqu', 'BcaB01g04149' => 'bca', 'BcaB03g12940' => 'bca', 'BcaB03g13090' => 'bca', 'BcaB03g14466' => 'bca', 'BcaB05g24035' => 'bca', 'BcaC01g06050' => 'bca', 'BcaC04g19148' => 'bca', 'BcaC04g20761' => 'bca', 'BcaC06g32845' => 'bca', 'BcaC07g41274' => 'bca', 'BcaC09g50827' => 'bca', 'BcaNung00741' => 'bca', 'BcaNung00742' => 'bca', 'BcaNung01859' => 'bca', 'BcaNung03985' => 'bca', 'BcaNung03989' => 'bca', 'BcaNung05661' => 'bca', 'BolC1t00257H' => 'bol', 'BolC1t01956H' => 'bol', 'BolC2t06534H' => 'bol', 'BolC3t14334H' => 'bol', 'BolC5t30451H' => 'bol', 'BolC7t45880H' => 'bol', 'BolC7t46586H' => 'bol', 'BolC8t49301H' => 'bol', 'BolC8t51837H' => 'bol', 'BolC9t56822H' => 'bol', 'BolC9t59235H' => 'bol', 'BraA01t00234Z' => 'bra', 'BraA01t01563Z' => 'bra', 'BraA02t05147Z' => 'bra', 'BraA03t10947Z' => 'bra', 'BraA03t14633Z' => 'bra', 'BraA08t35112Z' => 'bra', 'BraA09t41330Z' => 'bra', 'BraA10t44570Z' => 'bra', 'C01p02670' => 'bna', 'C01p20260' => 'bna', 'C02p05890' => 'bna', 'C03p19530' => 'bna', 'C05p17470' => 'bna', 'C07p53900' => 'bna', 'C07p61630' => 'bna', 'C08p16800' => 'bna', 'C08p42810' => 'bna', 'C09p39480' => 'bna', 'C09p63980' => 'bna', 'CAN.G1001.7' => 'can', 'CAN.G1034.55' => 'can', 'CAN.G143.7' => 'can', 'CAN.G3340.1' => 'can', 'CAN.G358.19' => 'can', 'CAN.G373.2' => 'can', 'CAN.G674.16' => 'can', 'CAN.G674.17' => 'can', 'CAN.G674.18' => 'can', 'CAN.G732.2' => 'can', 'CAN.G732.3' => 'can', 'CAN.G993.39' => 'can', 'CANSAT01G2052' => 'cansat', 'CANSAT80G0070' => 'cansat', 'CANSAT80G0483' => 'cansat', 'CANSAT80G0625' => 'cansat', 'CARHR019690' => 'chi', 'CARHR080280' => 'chi', 'CARHR152750' => 'chi', 'CARHR152760' => 'chi', 'CARHR152770' => 'chi', 'CARHR200340' => 'chi', 'CARHR232370' => 'chi', 'CARHR244670' => 'chi', 'CARHR244680' => 'chi', 'CARHR257520' => 'chi', 'Carub.0001s1872' => 'cru', 'Carub.0006s1130' => 'cru', 'Carub.0007s0396' => 'cru', 'Carub.0007s0397' => 'cru', 'Carub.0007s1608' => 'cru', 'Carub.0008s1068' => 'cru', 'Carub.0008s1077' => 'cru', 'Ca_16158_v3' => 'car', 'Ca_17571_v3' => 'car', 'Ca_21936_v3' => 'car', 'Ca_22350_v3' => 'car', 'CBR_g22445' => 'cbr', 'CBR_g26290' => 'cbr', 'Cc04_g09610' => 'ccan', 'Cc04_g12280' => 'ccan', 'Cc07_g10230' => 'ccan', 'CDE02G0093' => 'cde', 'CDE02G0701' => 'cde', 'CDE04G1050' => 'cde', 'CDE05G1833' => 'cde', 'CDE05G3058' => 'cde', 'CDE05G3380' => 'cde', 'CDE06G0536' => 'cde', 'Cfa006923' => 'cfa', 'Cfa009402' => 'cfa', 'Cfa018751' => 'cfa', 'Cfa019164' => 'cfa', 'Cfa022935' => 'cfa', 'Ciclev10019081m.g' => 'ccl', 'Ciclev10025076m.g' => 'ccl', 'Ciclev10030712m.g' => 'ccl', 'Ciclev10033760m.g' => 'ccl', 'CiPaw.05G105600' => 'cil', 'CiPaw.08G136700' => 'cil', 'CiPaw.11G003900' => 'cil', 'CiPaw.11G023700' => 'cil', 'CiPaw.12G003700' => 'cil', 'ClCG06G017100' => 'cla', 'ClCG06G018110' => 'cla', 'ClCG07G008800' => 'cla', 'ClCG07G015330' => 'cla', 'COL.COLO4_13698' => 'col', 'COL.COLO4_16659' => 'col', 'COL.COLO4_21986' => 'col', 'COL.COLO4_24049' => 'col', 'COL.COLO4_29061' => 'col', 'COL.COLO4_29075' => 'col', 'COL.COLO4_30094' => 'col', 'Cpa.g.c33689' => 'cpa', 'Cpa.g.sc108.39' => 'cpa', 'Cpa.g.sc108.41' => 'cpa', 'Cpa.g.sc1163.1' => 'cpa', 'Cpa.g.sc4.155' => 'cpa', 'Cpa.g.sc6.194' => 'cpa', 'CsaV3_1G000340' => 'csa', 'CsaV3_1G001400' => 'csa', 'CsaV3_4G002220' => 'csa', 'CsaV3_4G005370' => 'csa', 'CSS0007487' => 'camsi', 'CSS0008066' => 'camsi', 'CSS0009120' => 'camsi', 'CSS0015512' => 'camsi', 'CSS0022409' => 'camsi', 'CSS0025358' => 'camsi', 'CSS0044547' => 'camsi', 'DCAR_013057' => 'dca', 'DCAR_015058' => 'dca', 'DCAR_016027' => 'dca', 'DCAR_017327' => 'dca', 'DCAR_020743' => 'dca', 'DCAR_026157' => 'dca', 'DCAR_032339' => 'dca', 'DCAR_032340' => 'dca', 'Dinv11200' => 'din', 'Dinv11201' => 'din', 'Dinv20631' => 'din', 'Dinv23182' => 'din', 'Dinv33466' => 'din', 'Dinv33583' => 'din', 'Dinv38565' => 'din', 'Duzib068G0200' => 'dzi', 'Duzib147G0132' => 'dzi', 'Duzib147G0635' => 'dzi', 'Duzib205G1670' => 'dzi', 'Duzib251G0606' => 'dzi', 'ECA232G3336' => 'eca', 'ECA232G3763' => 'eca', 'ECA232G4845' => 'eca', 'ECA234G1607' => 'eca', 'ECA246G0932' => 'eca', 'ECA247G0781' => 'eca', 'ECA247G1932' => 'eca', 'ECA247G2079' => 'eca', 'ECA247G3338' => 'eca', 'ECA247G4115' => 'eca', 'EL10Ac3g06552' => 'bvu', 'EL10Ac5g10721' => 'bvu', 'EL10Ac5g10722' => 'bvu', 'EL10Ac5g10723' => 'bvu', 'EL10Ac5g11361' => 'bvu', 'EL10Ac6g13553' => 'bvu', 'EL10As8g23872' => 'bvu', 'Eucgr.B00250' => 'egr', 'Eucgr.B00251' => 'egr', 'Eucgr.B03533' => 'egr', 'Eucgr.I02381' => 'egr', 'Eucgr.K02700' => 'egr', 'FAN02G0174' => 'fan', 'FAN02G3146' => 'fan', 'FAN04G1672' => 'fan', 'FAN04G2273' => 'fan', 'FAN05G2791' => 'fan', 'FAN05G4035' => 'fan', 'FAN07G0834' => 'fan', 'FAN08G1198' => 'fan', 'FAN09G4182' => 'fan', 'FAN12G0496' => 'fan', 'FAN13G1027' => 'fan', 'FAN13G2951' => 'fan', 'FAN14G0705' => 'fan', 'FAN14G0720' => 'fan', 'FAN17G0201' => 'fan', 'FAN17G2665' => 'fan', 'FAN18G1456' => 'fan', 'FAN18G1525' => 'fan', 'FAN18G3500' => 'fan', 'FAN28G2670' => 'fan', 'FvH4_1g12391' => 'fve', 'FvH4_4g23220' => 'fve', 'FvH4_5g08810' => 'fve', 'FvH4_5g28960' => 'fve', 'FvH4_6g42820' => 'fve', 'FvH4_6g51110' => 'fve', 'Glyma.02G051802' => 'gma', 'Glyma.04G185300' => 'gma', 'Glyma.05G202900' => 'gma', 'Glyma.08G010300' => 'gma', 'Glyma.16G131900' => 'gma', 'Glyma.17G087900' => 'gma', 'Gohir.A07G048600' => 'ghi', 'Gohir.A11G179000' => 'ghi', 'Gohir.A12G140900' => 'ghi', 'Gohir.A12G140950' => 'ghi', 'Gohir.A12G191700' => 'ghi', 'Gohir.A13G086300' => 'ghi', 'Gohir.D07G052900' => 'ghi', 'Gohir.D11G186600' => 'ghi', 'Gohir.D12G145575' => 'ghi', 'Gohir.D12G145650' => 'ghi', 'Gohir.D12G145725' => 'ghi', 'Gohir.D12G194050' => 'ghi', 'Gohir.D13G091800' => 'ghi', 'Gorai.001G055900' => 'gra', 'Gorai.007G198400' => 'gra', 'Gorai.008G157000' => 'gra', 'Gorai.008G157100' => 'gra', 'Gorai.008G208700' => 'gra', 'Gorai.010G138700' => 'gra', 'GSVIVG01000977001' => 'vvi', 'GSVIVG01007708001' => 'vvi', 'GSVIVG01008587001' => 'vvi', 'GSVIVG01018849001' => 'vvi', 'GSVIVG01032432001' => 'vvi', 'HanXRQChr02g0034131' => 'han', 'HanXRQChr02g0035981' => 'han', 'HanXRQChr02g0035991' => 'han', 'HanXRQChr05g0155611' => 'han', 'HanXRQChr05g0155621' => 'han', 'HanXRQChr08g0236501' => 'han', 'HanXRQChr09g0261321' => 'han', 'HanXRQChr09g0272081' => 'han', 'HanXRQChr10g0310741' => 'han', 'HanXRQChr11g0325591' => 'han', 'HanXRQChr12g0385691' => 'han', 'HanXRQChr13g0387801' => 'han', 'HanXRQChr15g0463011' => 'han', 'Haze_03826' => 'cav', 'Haze_03827' => 'cav', 'Haze_07183' => 'cav', 'Haze_07537' => 'cav', 'Haze_07539' => 'cav', 'Haze_12461' => 'cav', 'Haze_16115' => 'cav', 'Haze_16808' => 'cav', 'Haze_18531' => 'cav', 'Hma1.2p1_0046F.1_g026700' => 'hma', 'Hma1.2p1_0046F.1_g026710' => 'hma', 'Hma1.2p1_0168F.1_g074340' => 'hma', 'Hma1.2p1_0266F.1_g107030' => 'hma', 'Hma1.2p1_0266F.1_g107060' => 'hma', 'Hma1.2p1_0275F.1_g110510' => 'hma', 'Hma1.2p1_0592F.1_g185490' => 'hma', 'Hma1.2p1_0592F.1_g185500' => 'hma', 'Hma1.2p1_0592F.1_g185510' => 'hma', 'Hma1.2p1_0592F.1_g185520' => 'hma', 'Hma1.2p1_0592F.1_g185530' => 'hma', 'Hma1.2p1_0818F.1_g223450' => 'hma', 'HPP92_009708' => 'vpl', 'HPP92_009793' => 'vpl', 'HPP92_009796' => 'vpl', 'HPP92_009797' => 'vpl', 'HPP92_014940' => 'vpl', 'HPP92_014988' => 'vpl', 'Hund02463' => 'sun', 'Hund02760' => 'sun', 'Hund05071' => 'sun', 'Hund10108' => 'sun', 'Hund11204' => 'sun', 'Hund14016' => 'sun', 'Hund16464' => 'sun', 'Lalb_Chr09g0333391' => 'lal', 'Lalb_Chr11g0070461' => 'lal', 'Lalb_Chr12g0201671' => 'lal', 'Lalb_Chr13g0297161' => 'lal', 'Lj1g0002823' => 'lja', 'Lj3C1074T6' => 'lonja', 'Lj4A212T28' => 'lonja', 'Lj4g0005516' => 'lja', 'Lj4g0013705' => 'lja', 'Lj4g0027865' => 'lja', 'Lj5C92G16' => 'lonja', 'Lj5C92T12' => 'lonja', 'Lj7C596T3' => 'lonja', 'Lj9A446G59' => 'lonja', 'Lj9A482G21' => 'lonja', 'Lsat_1_v5_gn_1_28261' => 'lsa', 'Lsat_1_v5_gn_1_28281' => 'lsa', 'Lsat_1_v5_gn_1_32721' => 'lsa', 'Lsat_1_v5_gn_4_151760' => 'lsa', 'Lsat_1_v5_gn_4_2120' => 'lsa', 'Lsat_1_v5_gn_4_75761' => 'lsa', 'Lsat_1_v5_gn_5_10920' => 'lsa', 'Manes.02G099900' => 'mes', 'Manes.11G096200' => 'mes', 'Manes.12G007200' => 'mes', 'Manes.14G048300' => 'mes', 'Manes.17G114700' => 'mes', 'Mapoly0002s0070' => 'mpo', 'Mapoly0029s0099' => 'mpo', 'MBI07_g24742_MAGBIO' => 'mbi', 'MBI10_g27988_MAGBIO' => 'mbi', 'MBI11_g13057_MAGBIO' => 'mbi', 'MD02G1137200' => 'mdo', 'MD06G1137200' => 'mdo', 'MD07G1122300' => 'mdo', 'MD09G1078200' => 'mdo', 'MD13G1123700' => 'mdo', 'MD14G1151900' => 'mdo', 'MD17G1030900' => 'mdo', 'MD17G1068200' => 'mdo', 'MD17G1068600' => 'mdo', 'Medtr3g077540' => 'mtr', 'Medtr4g105530' => 'mtr', 'Medtr8g076580' => 'mtr', 'Medtr8g076590' => 'mtr', 'Medtr8g096410' => 'mtr', 'MELO3C016411.2' => 'cme', 'MELO3C017780.2' => 'cme', 'MELO3C022560.2' => 'cme', 'MELO3C026187.2' => 'cme', 'MELO3C026286.2' => 'cme', 'MELO3C032854.2' => 'cme', 'Migut.H02495' => 'egut', 'Migut.I00561' => 'egut', 'Migut.K01015' => 'egut', 'Migut.K01016' => 'egut', 'Migut.L00743' => 'egut', 'Migut.L00744' => 'egut', 'Migut.L00746' => 'egut', 'Migut.L00798' => 'egut', 'Migut.L00799' => 'egut', 'Migut.N02096' => 'egut', 'MSTRG.11259' => 'ama', 'MSTRG.23142' => 'ama', 'MSTRG.2499' => 'ama', 'Nitab4.5_0000003g0730' => 'nta', 'Nitab4.5_0000137g0020' => 'nta', 'Nitab4.5_0000721g0210' => 'nta', 'Nitab4.5_0000723g0050' => 'nta', 'Nitab4.5_0000913g0070' => 'nta', 'Nitab4.5_0001332g0040' => 'nta', 'Nitab4.5_0001771g0050' => 'nta', 'Nitab4.5_0001918g0050' => 'nta', 'Nitab4.5_0002686g0030' => 'nta', 'Nitab4.5_0003156g0020' => 'nta', 'Nitab4.5_0003383g0040' => 'nta', 'Nitab4.5_0003918g0010' => 'nta', 'Nitab4.5_0006760g0010' => 'nta', 'Nn1g05981' => 'nnu', 'Nn1g06288' => 'nnu', 'Nn3g16371' => 'nnu', 'Nn3g16786' => 'nnu', 'Nn4g22232' => 'nnu', 'Oeu005144.1' => 'oeu', 'Oeu005145.1' => 'oeu', 'Oeu011348.1' => 'oeu', 'Oeu016415.1' => 'oeu', 'Oeu023501.1' => 'oeu', 'Oeu044473.1' => 'oeu', 'Oeu048892.2' => 'oeu', 'Os01g0549200' => 'osa', 'Os02g0469300' => 'osa', 'Os04g0311100' => 'osa', 'Os06g0474900' => 'osa', 'Os10g0181700' => 'osa', 'Os11g0454800' => 'osa', 'Peaxi162Scf00037g00714' => 'pax', 'Peaxi162Scf00084g01217' => 'pax', 'Peaxi162Scf00257g00217' => 'pax', 'Peaxi162Scf00516g00215' => 'pax', 'Peaxi162Scf00689g00123' => 'pax', 'PGR044G2719' => 'pgr', 'PGR083G1360' => 'pgr', 'PGR102G2849' => 'pgr', 'PGR119G2534' => 'pgr', 'PGSC0003DMG400003538' => 'stu', 'PGSC0003DMG400028138' => 'stu', 'PGSC0003DMG400031732' => 'stu', 'PGSC0003DMG400038165' => 'stu', 'Phvul.002G284600' => 'pvu', 'Phvul.003G258200' => 'pvu', 'Phvul.009G176500' => 'pvu', 'Potri.003G167201' => 'ptr', 'Potri.005G118400' => 'ptr', 'Potri.012G089000' => 'ptr', 'Potri.012G102800' => 'ptr', 'Potri.015G079400' => 'ptr', 'Potri.015G100900' => 'ptr', 'Pp3c14_9810' => 'ppa', 'Pp3c15_10450' => 'ppa', 'Pp3c20_19150' => 'ppa', 'Pp3c23_12740' => 'ppa', 'Pp3c23_6310' => 'ppa', 'Pp3c24_3720' => 'ppa', 'Pp3c27_2580' => 'ppa', 'Pp3c9_8990' => 'ppa', 'PRCOL_00002854' => 'pco', 'Prupe.1G221200' => 'ppe', 'Prupe.3G289000' => 'ppe', 'Prupe.5G147000' => 'ppe', 'Prupe.6G157300' => 'ppe', 'Prupe.7G163400' => 'ppe', 'Psat0s2177g0040' => 'psa', 'Psat3g174760' => 'psa', 'Psat3g192160' => 'psa', 'Psat4g058520' => 'psa', 'Psat4g096840' => 'psa', 'Psat7g037320' => 'psa', 'PSO017G1274' => 'pso', 'PSO017G5166' => 'pso', 'PSO063G4558' => 'pso', 'PSO170G4458' => 'pso', 'PSO170G5005' => 'pso', 'PSO210G6156' => 'pso', 'PSO210G6635' => 'pso', 'PSO210G7397' => 'pso', 'PSO210G7700' => 'pso', 'PSO455G0035' => 'pso', 'PSO455G0180' => 'pso', 'PSO478G4515' => 'pso', 'PSO832G1305' => 'pso', 'PSO832G3489' => 'pso', 'QL02p075247' => 'qlo', 'QL03p051148' => 'qlo', 'QL05p010313' => 'qlo', 'QL06p034627' => 'qlo', 'QL10p001889' => 'qlo', 'QL10p010846' => 'qlo', 'RcHm_v2.0_Chr1g0350621' => 'rch', 'RcHm_v2.0_Chr1g0350641' => 'rch', 'RcHm_v2.0_Chr2g0092891' => 'rch', 'RcHm_v2.0_Chr2g0100251' => 'rch', 'RcHm_v2.0_Chr2g0158661' => 'rch', 'RcHm_v2.0_Chr2g0172741' => 'rch', 'RcHm_v2.0_Chr4g0429571' => 'rch', 'RcHm_v2.0_Chr5g0042471' => 'rch', 'RcHm_v2.0_Chr7g0189451' => 'rch', 'Rhsim08G0052000' => 'rsi', 'Rhsim08G0174400' => 'rsi', 'Rhsim08G0193200' => 'rsi', 'Rhsim10G0214800' => 'rsi', 'Rhsim10G0214900' => 'rsi', 'Rhsim10G0215000' => 'rsi', 'Rhsim12G0022900' => 'rsi', 'Rhsim12G0177500' => 'rsi', 'Rhsim12G0177700' => 'rsi', 'Sabra03G0122600' => 'sbr', 'Sabra05G0097400' => 'sbr', 'Sabra12G0064100' => 'sbr', 'Sabra15G0121300' => 'sbr', 'SalBow2G0642' => 'sbo', 'SalBow5G2667' => 'sbo', 'SalBow5G4873' => 'sbo', 'SalBow8G2395' => 'sbo', 'Sc03g0003290' => 'sci', 'Sc10g0010130' => 'sci', 'Sc22g0003650' => 'sci', 'Sed0001603' => 'sed', 'Sed0004259' => 'sed', 'Sed0006789' => 'sed', 'Sed0011838' => 'sed', 'Sed0012964' => 'sed', 'Sed0016383' => 'sed', 'Sed0019010' => 'sed', 'Sed0020188' => 'sed', 'SEGI_04702' => 'sgi', 'SEGI_17231' => 'sgi', 'SEGI_18877' => 'sgi', 'SEGI_25196' => 'sgi', 'SEGI_25515' => 'sgi', 'SEGI_28445' => 'sgi', 'SEGI_37452' => 'sgi', 'SGA_v2.0_scaffold188G40336' => 'sas', 'SGA_v2.0_scaffold228G43247' => 'sas', 'SGA_v2.0_scaffold280G46853' => 'sas', 'SGA_v2.0_scaffold34G13808' => 'sas', 'SGA_v2.0_scaffold40G15576' => 'sas', 'SGA_v2.0_scaffold611G53188' => 'sas', 'SGA_v2.0_scaffold78G25461' => 'sas', 'SGA_v2.0_scaffold90G27888' => 'sas', 'SHI08601' => 'shi', 'SHI08606' => 'shi', 'SHI17117' => 'shi', 'SHI17119' => 'shi', 'SMO118G0201' => 'smo', 'SMO169G0247' => 'smo', 'SMO176G0006' => 'smo', 'SMO176G0015' => 'smo', 'SMO202G0006' => 'smo', 'SMO240G0050' => 'smo', 'SMO286G0009' => 'smo', 'SMO338G0033' => 'smo', 'SMO356G0533' => 'smo', 'SMO364G0382' => 'smo', 'SMO367G0166' => 'smo', 'SMO367G1098' => 'smo', 'Solyc01g009920.3' => 'sly', 'Solyc01g099300.3' => 'sly', 'Solyc02g084700.3' => 'sly', 'Solyc03g097520.3' => 'sly', 'Solyc06g071580.3' => 'sly', 'Solyc10g081760.3' => 'sly', 'Sopen01g005480' => 'spe', 'Sopen01g042850' => 'spe', 'Sopen02g029370' => 'spe', 'Sopen03g028280' => 'spe', 'Sopen06g027870' => 'spe', 'Sopen10g032270' => 'spe', 'Sp5g18180' => 'spa', 'Sp6g12880' => 'spa', 'Sp6g30850' => 'spa', 'Sp7g22960' => 'spa', 'Sp7g34010' => 'spa', 'SpUn1326_0010' => 'spa', 'TAR371G0242' => 'tar', 'TAR622G0638' => 'tar', 'TAR628G1548' => 'tar', 'TAR629G1079' => 'tar', 'TAR629G3413' => 'tar', 'THA.LOC104804249' => 'tha', 'THA.LOC104808315' => 'tha', 'THA.LOC104809238' => 'tha', 'THA.LOC104825484' => 'tha', 'Thecc.01G025500' => 'tca', 'Thecc.03G015800' => 'tca', 'Thecc.03G018000' => 'tca', 'Thecc.03G134800' => 'tca', 'Thecc.04G014700' => 'tca', 'Thhalv10006991m.g' => 'esa', 'Thhalv10012707m.g' => 'esa', 'Thhalv10015739m.g' => 'esa', 'Thhalv10024553m.g' => 'esa', 'Thhalv10024673m.g' => 'esa', 'Thhalv10029187m.g' => 'esa', 'TPR.G12971' => 'tpr', 'TPR.G29396' => 'tpr', 'TPR.G33376' => 'tpr', 'TPR.G35508' => 'tpr', 'TPR.G35516' => 'tpr', 'TPR.G37317' => 'tpr', 'TPR.G37389' => 'tpr', 'TPR.G37523' => 'tpr', 'TPR.G559' => 'tpr', 'TWI14G0070' => 'twi', 'TWI14G0729' => 'twi', 'TWI18G0596' => 'twi', 'TWI39G0780' => 'twi', 'TWI39G0850' => 'twi', 'TWI73G1052' => 'twi', 'unitig_52.g17485' => 'ugi', 'unitig_61.g26355' => 'ugi', 'vmacro01040' => 'vma', 'vmacro16731' => 'vma', 'vmacro18270' => 'vma', 'vmacro19142' => 'vma', 'vmacro19407' => 'vma', 'vmacro19408' => 'vma', 'vmacro21899' => 'vma', 'vmacro21900' => 'vma', 'vmacro21901' => 'vma', 'VMungo0251G0490' => 'vmu', 'VMungo0251G1748' => 'vmu', 'VMungo1309G0421' => 'vmu', 'Zm00001eb086500' => 'zma', 'Zm00001eb150680' => 'zma', 'Zm00001eb162330' => 'zma', 'Zm00001eb203130' => 'zma', 'Zm00001eb369480' => 'zma', 'Zm00001eb382340' => 'zma', 'Zm00001eb416360' => 'zma' ) $gf_id = 'HOM05D000902' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000902' ) $data_identifier = 'HOM05D000902' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 13, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 10, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 6, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 9, 'hma' => (int) 12, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 4, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 6, 'ppa' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 6, 'rch' => (int) 9, 'rsi' => (int) 9, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 12, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 3, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416360' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000902', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '663', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02470' => 'bna', 'A01p16260' => 'bna', 'A02p01680' => 'bna', 'A03p16600' => 'bna', 'A03p55660' => 'bna', 'A03p64160' => 'bna', 'A03p64170' => 'bna', 'A08p31900' => 'bna', 'A09p59530' => 'bna', 'A10p08230' => 'bna', 'A10p25090' => 'bna', 'Aa31LG3G7100' => 'aar', 'Aa31LG3G7110' => 'aar', 'Aa31LG6G13160' => 'aar', 'Aa31LG7G10770' => 'aar', 'Aa31LG7G3830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2723' => 'aag', 'Actinidia08045' => 'ach', 'Actinidia08888' => 'ach', 'Actinidia18333' => 'ach', 'Actinidia19334' => 'ach', 'Actinidia25552' => 'ach', 'Actinidia26089' => 'ach', 'Actinidia30615' => 'ach', 'Actinidia30616' => 'ach', 'Actinidia33083' => 'ach', 'Actinidia35762' => 'ach', 'Ah.02g110620' => 'amhyb', 'Ah.11g046390' => 'amhyb', 'AL1G31670' => 'aly', 'AL6G23730' => 'aly', 'AL7G14740' => 'aly', 'AL7G14750' => 'aly', 'AL7G14760' => 'aly', 'AL7G28220' => 'aly', 'AL8G24940' => 'aly', 'Aqoxy3G01665' => 'aox', 'Aqoxy3G02853' => 'aox', 'Aqoxy5G01513' => 'aox', 'Aqoxy5G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8SKA4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ75LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKDA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0LJZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7REX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZP4YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWX7I5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2QKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS0L9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPCD8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q161UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC7XCF' => 'arhy', 'AT1G19100' => 'ath', 'AT4G24970' => 'ath', 'AT4G36270' => 'ath', 'AT4G36280' => 'ath', 'AT4G36290' => 'ath', 'AT5G13130' => 'ath', 'AT5G50780' => 'ath', 'ATR0582G266' => 'atr', 'ATR0661G195' => 'atr', 'ATR1152G031' => 'atr', 'Atru.chr11.2382' => 'acertr', 'Atru.chr12.2337' => 'acertr', 'Atru.chr3.744' => 'acertr', 'Atru.chr6.1870' => 'acertr', 'Atru.chr9.2515' => 'acertr', 'AUR62004120' => 'cqu', 'AUR62005667' => 'cqu', 'AUR62007634' => 'cqu', 'AUR62008186' => 'cqu', 'AUR62008187' => 'cqu', 'AUR62008188' => 'cqu', 'AUR62027954' => 'cqu', 'AUR62028766' => 'cqu', 'AUR62028767' => 'cqu', 'AUR62028768' => 'cqu', 'AUR62028886' => 'cqu', 'AUR62029563' => 'cqu', 'AUR62038832' => 'cqu', 'BcaB01g04149' => 'bca', 'BcaB03g12940' => 'bca', 'BcaB03g13090' => 'bca', 'BcaB03g14466' => 'bca', 'BcaB05g24035' => 'bca', 'BcaC01g06050' => 'bca', 'BcaC04g19148' => 'bca', 'BcaC04g20761' => 'bca', 'BcaC06g32845' => 'bca', 'BcaC07g41274' => 'bca', 'BcaC09g50827' => 'bca', 'BcaNung00741' => 'bca', 'BcaNung00742' => 'bca', 'BcaNung01859' => 'bca', 'BcaNung03985' => 'bca', 'BcaNung03989' => 'bca', 'BcaNung05661' => 'bca', 'BolC1t00257H' => 'bol', 'BolC1t01956H' => 'bol', 'BolC2t06534H' => 'bol', 'BolC3t14334H' => 'bol', 'BolC5t30451H' => 'bol', 'BolC7t45880H' => 'bol', 'BolC7t46586H' => 'bol', 'BolC8t49301H' => 'bol', 'BolC8t51837H' => 'bol', 'BolC9t56822H' => 'bol', 'BolC9t59235H' => 'bol', 'BraA01t00234Z' => 'bra', 'BraA01t01563Z' => 'bra', 'BraA02t05147Z' => 'bra', 'BraA03t10947Z' => 'bra', 'BraA03t14633Z' => 'bra', 'BraA08t35112Z' => 'bra', 'BraA09t41330Z' => 'bra', 'BraA10t44570Z' => 'bra', 'C01p02670' => 'bna', 'C01p20260' => 'bna', 'C02p05890' => 'bna', 'C03p19530' => 'bna', 'C05p17470' => 'bna', 'C07p53900' => 'bna', 'C07p61630' => 'bna', 'C08p16800' => 'bna', 'C08p42810' => 'bna', 'C09p39480' => 'bna', 'C09p63980' => 'bna', 'CAN.G1001.7' => 'can', 'CAN.G1034.55' => 'can', 'CAN.G143.7' => 'can', 'CAN.G3340.1' => 'can', 'CAN.G358.19' => 'can', 'CAN.G373.2' => 'can', 'CAN.G674.16' => 'can', 'CAN.G674.17' => 'can', 'CAN.G674.18' => 'can', 'CAN.G732.2' => 'can', 'CAN.G732.3' => 'can', 'CAN.G993.39' => 'can', 'CANSAT01G2052' => 'cansat', 'CANSAT80G0070' => 'cansat', 'CANSAT80G0483' => 'cansat', 'CANSAT80G0625' => 'cansat', 'CARHR019690' => 'chi', 'CARHR080280' => 'chi', 'CARHR152750' => 'chi', 'CARHR152760' => 'chi', 'CARHR152770' => 'chi', 'CARHR200340' => 'chi', 'CARHR232370' => 'chi', 'CARHR244670' => 'chi', 'CARHR244680' => 'chi', 'CARHR257520' => 'chi', 'Carub.0001s1872' => 'cru', 'Carub.0006s1130' => 'cru', 'Carub.0007s0396' => 'cru', 'Carub.0007s0397' => 'cru', 'Carub.0007s1608' => 'cru', 'Carub.0008s1068' => 'cru', 'Carub.0008s1077' => 'cru', 'Ca_16158_v3' => 'car', 'Ca_17571_v3' => 'car', 'Ca_21936_v3' => 'car', 'Ca_22350_v3' => 'car', 'CBR_g22445' => 'cbr', 'CBR_g26290' => 'cbr', 'Cc04_g09610' => 'ccan', 'Cc04_g12280' => 'ccan', 'Cc07_g10230' => 'ccan', 'CDE02G0093' => 'cde', 'CDE02G0701' => 'cde', 'CDE04G1050' => 'cde', 'CDE05G1833' => 'cde', 'CDE05G3058' => 'cde', 'CDE05G3380' => 'cde', 'CDE06G0536' => 'cde', 'Cfa006923' => 'cfa', 'Cfa009402' => 'cfa', 'Cfa018751' => 'cfa', 'Cfa019164' => 'cfa', 'Cfa022935' => 'cfa', 'Ciclev10019081m.g' => 'ccl', 'Ciclev10025076m.g' => 'ccl', 'Ciclev10030712m.g' => 'ccl', 'Ciclev10033760m.g' => 'ccl', 'CiPaw.05G105600' => 'cil', 'CiPaw.08G136700' => 'cil', 'CiPaw.11G003900' => 'cil', 'CiPaw.11G023700' => 'cil', 'CiPaw.12G003700' => 'cil', 'ClCG06G017100' => 'cla', 'ClCG06G018110' => 'cla', 'ClCG07G008800' => 'cla', 'ClCG07G015330' => 'cla', 'COL.COLO4_13698' => 'col', 'COL.COLO4_16659' => 'col', 'COL.COLO4_21986' => 'col', 'COL.COLO4_24049' => 'col', 'COL.COLO4_29061' => 'col', 'COL.COLO4_29075' => 'col', 'COL.COLO4_30094' => 'col', 'Cpa.g.c33689' => 'cpa', 'Cpa.g.sc108.39' => 'cpa', 'Cpa.g.sc108.41' => 'cpa', 'Cpa.g.sc1163.1' => 'cpa', 'Cpa.g.sc4.155' => 'cpa', 'Cpa.g.sc6.194' => 'cpa', 'CsaV3_1G000340' => 'csa', 'CsaV3_1G001400' => 'csa', 'CsaV3_4G002220' => 'csa', 'CsaV3_4G005370' => 'csa', 'CSS0007487' => 'camsi', 'CSS0008066' => 'camsi', 'CSS0009120' => 'camsi', 'CSS0015512' => 'camsi', 'CSS0022409' => 'camsi', 'CSS0025358' => 'camsi', 'CSS0044547' => 'camsi', 'DCAR_013057' => 'dca', 'DCAR_015058' => 'dca', 'DCAR_016027' => 'dca', 'DCAR_017327' => 'dca', 'DCAR_020743' => 'dca', 'DCAR_026157' => 'dca', 'DCAR_032339' => 'dca', 'DCAR_032340' => 'dca', 'Dinv11200' => 'din', 'Dinv11201' => 'din', 'Dinv20631' => 'din', 'Dinv23182' => 'din', 'Dinv33466' => 'din', 'Dinv33583' => 'din', 'Dinv38565' => 'din', 'Duzib068G0200' => 'dzi', 'Duzib147G0132' => 'dzi', 'Duzib147G0635' => 'dzi', 'Duzib205G1670' => 'dzi', 'Duzib251G0606' => 'dzi', 'ECA232G3336' => 'eca', 'ECA232G3763' => 'eca', 'ECA232G4845' => 'eca', 'ECA234G1607' => 'eca', 'ECA246G0932' => 'eca', 'ECA247G0781' => 'eca', 'ECA247G1932' => 'eca', 'ECA247G2079' => 'eca', 'ECA247G3338' => 'eca', 'ECA247G4115' => 'eca', 'EL10Ac3g06552' => 'bvu', 'EL10Ac5g10721' => 'bvu', 'EL10Ac5g10722' => 'bvu', 'EL10Ac5g10723' => 'bvu', 'EL10Ac5g11361' => 'bvu', 'EL10Ac6g13553' => 'bvu', 'EL10As8g23872' => 'bvu', 'Eucgr.B00250' => 'egr', 'Eucgr.B00251' => 'egr', 'Eucgr.B03533' => 'egr', 'Eucgr.I02381' => 'egr', 'Eucgr.K02700' => 'egr', 'FAN02G0174' => 'fan', 'FAN02G3146' => 'fan', 'FAN04G1672' => 'fan', 'FAN04G2273' => 'fan', 'FAN05G2791' => 'fan', 'FAN05G4035' => 'fan', 'FAN07G0834' => 'fan', 'FAN08G1198' => 'fan', 'FAN09G4182' => 'fan', 'FAN12G0496' => 'fan', 'FAN13G1027' => 'fan', 'FAN13G2951' => 'fan', 'FAN14G0705' => 'fan', 'FAN14G0720' => 'fan', 'FAN17G0201' => 'fan', 'FAN17G2665' => 'fan', 'FAN18G1456' => 'fan', 'FAN18G1525' => 'fan', 'FAN18G3500' => 'fan', 'FAN28G2670' => 'fan', 'FvH4_1g12391' => 'fve', 'FvH4_4g23220' => 'fve', 'FvH4_5g08810' => 'fve', 'FvH4_5g28960' => 'fve', 'FvH4_6g42820' => 'fve', 'FvH4_6g51110' => 'fve', 'Glyma.02G051802' => 'gma', 'Glyma.04G185300' => 'gma', 'Glyma.05G202900' => 'gma', 'Glyma.08G010300' => 'gma', 'Glyma.16G131900' => 'gma', 'Glyma.17G087900' => 'gma', 'Gohir.A07G048600' => 'ghi', 'Gohir.A11G179000' => 'ghi', 'Gohir.A12G140900' => 'ghi', 'Gohir.A12G140950' => 'ghi', 'Gohir.A12G191700' => 'ghi', 'Gohir.A13G086300' => 'ghi', 'Gohir.D07G052900' => 'ghi', 'Gohir.D11G186600' => 'ghi', 'Gohir.D12G145575' => 'ghi', 'Gohir.D12G145650' => 'ghi', 'Gohir.D12G145725' => 'ghi', 'Gohir.D12G194050' => 'ghi', 'Gohir.D13G091800' => 'ghi', 'Gorai.001G055900' => 'gra', 'Gorai.007G198400' => 'gra', 'Gorai.008G157000' => 'gra', 'Gorai.008G157100' => 'gra', 'Gorai.008G208700' => 'gra', 'Gorai.010G138700' => 'gra', 'GSVIVG01000977001' => 'vvi', 'GSVIVG01007708001' => 'vvi', 'GSVIVG01008587001' => 'vvi', 'GSVIVG01018849001' => 'vvi', 'GSVIVG01032432001' => 'vvi', 'HanXRQChr02g0034131' => 'han', 'HanXRQChr02g0035981' => 'han', 'HanXRQChr02g0035991' => 'han', 'HanXRQChr05g0155611' => 'han', 'HanXRQChr05g0155621' => 'han', 'HanXRQChr08g0236501' => 'han', 'HanXRQChr09g0261321' => 'han', 'HanXRQChr09g0272081' => 'han', 'HanXRQChr10g0310741' => 'han', 'HanXRQChr11g0325591' => 'han', 'HanXRQChr12g0385691' => 'han', 'HanXRQChr13g0387801' => 'han', 'HanXRQChr15g0463011' => 'han', 'Haze_03826' => 'cav', 'Haze_03827' => 'cav', 'Haze_07183' => 'cav', 'Haze_07537' => 'cav', 'Haze_07539' => 'cav', 'Haze_12461' => 'cav', 'Haze_16115' => 'cav', 'Haze_16808' => 'cav', 'Haze_18531' => 'cav', 'Hma1.2p1_0046F.1_g026700' => 'hma', 'Hma1.2p1_0046F.1_g026710' => 'hma', 'Hma1.2p1_0168F.1_g074340' => 'hma', 'Hma1.2p1_0266F.1_g107030' => 'hma', 'Hma1.2p1_0266F.1_g107060' => 'hma', 'Hma1.2p1_0275F.1_g110510' => 'hma', 'Hma1.2p1_0592F.1_g185490' => 'hma', 'Hma1.2p1_0592F.1_g185500' => 'hma', 'Hma1.2p1_0592F.1_g185510' => 'hma', 'Hma1.2p1_0592F.1_g185520' => 'hma', 'Hma1.2p1_0592F.1_g185530' => 'hma', 'Hma1.2p1_0818F.1_g223450' => 'hma', 'HPP92_009708' => 'vpl', 'HPP92_009793' => 'vpl', 'HPP92_009796' => 'vpl', 'HPP92_009797' => 'vpl', 'HPP92_014940' => 'vpl', 'HPP92_014988' => 'vpl', 'Hund02463' => 'sun', 'Hund02760' => 'sun', 'Hund05071' => 'sun', 'Hund10108' => 'sun', 'Hund11204' => 'sun', 'Hund14016' => 'sun', 'Hund16464' => 'sun', 'Lalb_Chr09g0333391' => 'lal', 'Lalb_Chr11g0070461' => 'lal', 'Lalb_Chr12g0201671' => 'lal', 'Lalb_Chr13g0297161' => 'lal', 'Lj1g0002823' => 'lja', 'Lj3C1074T6' => 'lonja', 'Lj4A212T28' => 'lonja', 'Lj4g0005516' => 'lja', 'Lj4g0013705' => 'lja', 'Lj4g0027865' => 'lja', 'Lj5C92G16' => 'lonja', 'Lj5C92T12' => 'lonja', 'Lj7C596T3' => 'lonja', 'Lj9A446G59' => 'lonja', 'Lj9A482G21' => 'lonja', 'Lsat_1_v5_gn_1_28261' => 'lsa', 'Lsat_1_v5_gn_1_28281' => 'lsa', 'Lsat_1_v5_gn_1_32721' => 'lsa', 'Lsat_1_v5_gn_4_151760' => 'lsa', 'Lsat_1_v5_gn_4_2120' => 'lsa', 'Lsat_1_v5_gn_4_75761' => 'lsa', 'Lsat_1_v5_gn_5_10920' => 'lsa', 'Manes.02G099900' => 'mes', 'Manes.11G096200' => 'mes', 'Manes.12G007200' => 'mes', 'Manes.14G048300' => 'mes', 'Manes.17G114700' => 'mes', 'Mapoly0002s0070' => 'mpo', 'Mapoly0029s0099' => 'mpo', 'MBI07_g24742_MAGBIO' => 'mbi', 'MBI10_g27988_MAGBIO' => 'mbi', 'MBI11_g13057_MAGBIO' => 'mbi', 'MD02G1137200' => 'mdo', 'MD06G1137200' => 'mdo', 'MD07G1122300' => 'mdo', 'MD09G1078200' => 'mdo', 'MD13G1123700' => 'mdo', 'MD14G1151900' => 'mdo', 'MD17G1030900' => 'mdo', 'MD17G1068200' => 'mdo', 'MD17G1068600' => 'mdo', 'Medtr3g077540' => 'mtr', 'Medtr4g105530' => 'mtr', 'Medtr8g076580' => 'mtr', 'Medtr8g076590' => 'mtr', 'Medtr8g096410' => 'mtr', 'MELO3C016411.2' => 'cme', 'MELO3C017780.2' => 'cme', 'MELO3C022560.2' => 'cme', 'MELO3C026187.2' => 'cme', 'MELO3C026286.2' => 'cme', 'MELO3C032854.2' => 'cme', 'Migut.H02495' => 'egut', 'Migut.I00561' => 'egut', 'Migut.K01015' => 'egut', 'Migut.K01016' => 'egut', 'Migut.L00743' => 'egut', 'Migut.L00744' => 'egut', 'Migut.L00746' => 'egut', 'Migut.L00798' => 'egut', 'Migut.L00799' => 'egut', 'Migut.N02096' => 'egut', 'MSTRG.11259' => 'ama', 'MSTRG.23142' => 'ama', 'MSTRG.2499' => 'ama', 'Nitab4.5_0000003g0730' => 'nta', 'Nitab4.5_0000137g0020' => 'nta', 'Nitab4.5_0000721g0210' => 'nta', 'Nitab4.5_0000723g0050' => 'nta', 'Nitab4.5_0000913g0070' => 'nta', 'Nitab4.5_0001332g0040' => 'nta', 'Nitab4.5_0001771g0050' => 'nta', 'Nitab4.5_0001918g0050' => 'nta', 'Nitab4.5_0002686g0030' => 'nta', 'Nitab4.5_0003156g0020' => 'nta', 'Nitab4.5_0003383g0040' => 'nta', 'Nitab4.5_0003918g0010' => 'nta', 'Nitab4.5_0006760g0010' => 'nta', 'Nn1g05981' => 'nnu', 'Nn1g06288' => 'nnu', 'Nn3g16371' => 'nnu', 'Nn3g16786' => 'nnu', 'Nn4g22232' => 'nnu', 'Oeu005144.1' => 'oeu', 'Oeu005145.1' => 'oeu', 'Oeu011348.1' => 'oeu', 'Oeu016415.1' => 'oeu', 'Oeu023501.1' => 'oeu', 'Oeu044473.1' => 'oeu', 'Oeu048892.2' => 'oeu', 'Os01g0549200' => 'osa', 'Os02g0469300' => 'osa', 'Os04g0311100' => 'osa', 'Os06g0474900' => 'osa', 'Os10g0181700' => 'osa', 'Os11g0454800' => 'osa', 'Peaxi162Scf00037g00714' => 'pax', 'Peaxi162Scf00084g01217' => 'pax', 'Peaxi162Scf00257g00217' => 'pax', 'Peaxi162Scf00516g00215' => 'pax', 'Peaxi162Scf00689g00123' => 'pax', 'PGR044G2719' => 'pgr', 'PGR083G1360' => 'pgr', 'PGR102G2849' => 'pgr', 'PGR119G2534' => 'pgr', 'PGSC0003DMG400003538' => 'stu', 'PGSC0003DMG400028138' => 'stu', 'PGSC0003DMG400031732' => 'stu', 'PGSC0003DMG400038165' => 'stu', 'Phvul.002G284600' => 'pvu', 'Phvul.003G258200' => 'pvu', 'Phvul.009G176500' => 'pvu', 'Potri.003G167201' => 'ptr', 'Potri.005G118400' => 'ptr', 'Potri.012G089000' => 'ptr', 'Potri.012G102800' => 'ptr', 'Potri.015G079400' => 'ptr', 'Potri.015G100900' => 'ptr', 'Pp3c14_9810' => 'ppa', 'Pp3c15_10450' => 'ppa', 'Pp3c20_19150' => 'ppa', 'Pp3c23_12740' => 'ppa', 'Pp3c23_6310' => 'ppa', 'Pp3c24_3720' => 'ppa', 'Pp3c27_2580' => 'ppa', 'Pp3c9_8990' => 'ppa', 'PRCOL_00002854' => 'pco', 'Prupe.1G221200' => 'ppe', 'Prupe.3G289000' => 'ppe', 'Prupe.5G147000' => 'ppe', 'Prupe.6G157300' => 'ppe', 'Prupe.7G163400' => 'ppe', 'Psat0s2177g0040' => 'psa', 'Psat3g174760' => 'psa', 'Psat3g192160' => 'psa', 'Psat4g058520' => 'psa', 'Psat4g096840' => 'psa', 'Psat7g037320' => 'psa', 'PSO017G1274' => 'pso', 'PSO017G5166' => 'pso', 'PSO063G4558' => 'pso', 'PSO170G4458' => 'pso', 'PSO170G5005' => 'pso', 'PSO210G6156' => 'pso', 'PSO210G6635' => 'pso', 'PSO210G7397' => 'pso', 'PSO210G7700' => 'pso', 'PSO455G0035' => 'pso', 'PSO455G0180' => 'pso', 'PSO478G4515' => 'pso', 'PSO832G1305' => 'pso', 'PSO832G3489' => 'pso', 'QL02p075247' => 'qlo', 'QL03p051148' => 'qlo', 'QL05p010313' => 'qlo', 'QL06p034627' => 'qlo', 'QL10p001889' => 'qlo', 'QL10p010846' => 'qlo', 'RcHm_v2.0_Chr1g0350621' => 'rch', 'RcHm_v2.0_Chr1g0350641' => 'rch', 'RcHm_v2.0_Chr2g0092891' => 'rch', 'RcHm_v2.0_Chr2g0100251' => 'rch', 'RcHm_v2.0_Chr2g0158661' => 'rch', 'RcHm_v2.0_Chr2g0172741' => 'rch', 'RcHm_v2.0_Chr4g0429571' => 'rch', 'RcHm_v2.0_Chr5g0042471' => 'rch', 'RcHm_v2.0_Chr7g0189451' => 'rch', 'Rhsim08G0052000' => 'rsi', 'Rhsim08G0174400' => 'rsi', 'Rhsim08G0193200' => 'rsi', 'Rhsim10G0214800' => 'rsi', 'Rhsim10G0214900' => 'rsi', 'Rhsim10G0215000' => 'rsi', 'Rhsim12G0022900' => 'rsi', 'Rhsim12G0177500' => 'rsi', 'Rhsim12G0177700' => 'rsi', 'Sabra03G0122600' => 'sbr', 'Sabra05G0097400' => 'sbr', 'Sabra12G0064100' => 'sbr', 'Sabra15G0121300' => 'sbr', 'SalBow2G0642' => 'sbo', 'SalBow5G2667' => 'sbo', 'SalBow5G4873' => 'sbo', 'SalBow8G2395' => 'sbo', 'Sc03g0003290' => 'sci', 'Sc10g0010130' => 'sci', 'Sc22g0003650' => 'sci', 'Sed0001603' => 'sed', 'Sed0004259' => 'sed', 'Sed0006789' => 'sed', 'Sed0011838' => 'sed', 'Sed0012964' => 'sed', 'Sed0016383' => 'sed', 'Sed0019010' => 'sed', 'Sed0020188' => 'sed', 'SEGI_04702' => 'sgi', 'SEGI_17231' => 'sgi', 'SEGI_18877' => 'sgi', 'SEGI_25196' => 'sgi', 'SEGI_25515' => 'sgi', 'SEGI_28445' => 'sgi', 'SEGI_37452' => 'sgi', 'SGA_v2.0_scaffold188G40336' => 'sas', 'SGA_v2.0_scaffold228G43247' => 'sas', 'SGA_v2.0_scaffold280G46853' => 'sas', 'SGA_v2.0_scaffold34G13808' => 'sas', 'SGA_v2.0_scaffold40G15576' => 'sas', 'SGA_v2.0_scaffold611G53188' => 'sas', 'SGA_v2.0_scaffold78G25461' => 'sas', 'SGA_v2.0_scaffold90G27888' => 'sas', 'SHI08601' => 'shi', 'SHI08606' => 'shi', 'SHI17117' => 'shi', 'SHI17119' => 'shi', 'SMO118G0201' => 'smo', 'SMO169G0247' => 'smo', 'SMO176G0006' => 'smo', 'SMO176G0015' => 'smo', 'SMO202G0006' => 'smo', 'SMO240G0050' => 'smo', 'SMO286G0009' => 'smo', 'SMO338G0033' => 'smo', 'SMO356G0533' => 'smo', 'SMO364G0382' => 'smo', 'SMO367G0166' => 'smo', 'SMO367G1098' => 'smo', 'Solyc01g009920.3' => 'sly', 'Solyc01g099300.3' => 'sly', 'Solyc02g084700.3' => 'sly', 'Solyc03g097520.3' => 'sly', 'Solyc06g071580.3' => 'sly', 'Solyc10g081760.3' => 'sly', 'Sopen01g005480' => 'spe', 'Sopen01g042850' => 'spe', 'Sopen02g029370' => 'spe', 'Sopen03g028280' => 'spe', 'Sopen06g027870' => 'spe', 'Sopen10g032270' => 'spe', 'Sp5g18180' => 'spa', 'Sp6g12880' => 'spa', 'Sp6g30850' => 'spa', 'Sp7g22960' => 'spa', 'Sp7g34010' => 'spa', 'SpUn1326_0010' => 'spa', 'TAR371G0242' => 'tar', 'TAR622G0638' => 'tar', 'TAR628G1548' => 'tar', 'TAR629G1079' => 'tar', 'TAR629G3413' => 'tar', 'THA.LOC104804249' => 'tha', 'THA.LOC104808315' => 'tha', 'THA.LOC104809238' => 'tha', 'THA.LOC104825484' => 'tha', 'Thecc.01G025500' => 'tca', 'Thecc.03G015800' => 'tca', 'Thecc.03G018000' => 'tca', 'Thecc.03G134800' => 'tca', 'Thecc.04G014700' => 'tca', 'Thhalv10006991m.g' => 'esa', 'Thhalv10012707m.g' => 'esa', 'Thhalv10015739m.g' => 'esa', 'Thhalv10024553m.g' => 'esa', 'Thhalv10024673m.g' => 'esa', 'Thhalv10029187m.g' => 'esa', 'TPR.G12971' => 'tpr', 'TPR.G29396' => 'tpr', 'TPR.G33376' => 'tpr', 'TPR.G35508' => 'tpr', 'TPR.G35516' => 'tpr', 'TPR.G37317' => 'tpr', 'TPR.G37389' => 'tpr', 'TPR.G37523' => 'tpr', 'TPR.G559' => 'tpr', 'TWI14G0070' => 'twi', 'TWI14G0729' => 'twi', 'TWI18G0596' => 'twi', 'TWI39G0780' => 'twi', 'TWI39G0850' => 'twi', 'TWI73G1052' => 'twi', 'unitig_52.g17485' => 'ugi', 'unitig_61.g26355' => 'ugi', 'vmacro01040' => 'vma', 'vmacro16731' => 'vma', 'vmacro18270' => 'vma', 'vmacro19142' => 'vma', 'vmacro19407' => 'vma', 'vmacro19408' => 'vma', 'vmacro21899' => 'vma', 'vmacro21900' => 'vma', 'vmacro21901' => 'vma', 'VMungo0251G0490' => 'vmu', 'VMungo0251G1748' => 'vmu', 'VMungo1309G0421' => 'vmu', 'Zm00001eb086500' => 'zma', 'Zm00001eb150680' => 'zma', 'Zm00001eb162330' => 'zma', 'Zm00001eb203130' => 'zma', 'Zm00001eb369480' => 'zma', 'Zm00001eb382340' => 'zma', 'Zm00001eb416360' => 'zma' ), 'gf_id' => 'HOM05D000902', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000902' ), 'data_identifier' => 'HOM05D000902', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000902', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '663', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02470' => 'bna', 'A01p16260' => 'bna', 'A02p01680' => 'bna', 'A03p16600' => 'bna', 'A03p55660' => 'bna', 'A03p64160' => 'bna', 'A03p64170' => 'bna', 'A08p31900' => 'bna', 'A09p59530' => 'bna', 'A10p08230' => 'bna', 'A10p25090' => 'bna', 'Aa31LG3G7100' => 'aar', 'Aa31LG3G7110' => 'aar', 'Aa31LG6G13160' => 'aar', 'Aa31LG7G10770' => 'aar', 'Aa31LG7G3830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2723' => 'aag', 'Actinidia08045' => 'ach', 'Actinidia08888' => 'ach', 'Actinidia18333' => 'ach', 'Actinidia19334' => 'ach', 'Actinidia25552' => 'ach', 'Actinidia26089' => 'ach', 'Actinidia30615' => 'ach', 'Actinidia30616' => 'ach', 'Actinidia33083' => 'ach', 'Actinidia35762' => 'ach', 'Ah.02g110620' => 'amhyb', 'Ah.11g046390' => 'amhyb', 'AL1G31670' => 'aly', 'AL6G23730' => 'aly', 'AL7G14740' => 'aly', 'AL7G14750' => 'aly', 'AL7G14760' => 'aly', 'AL7G28220' => 'aly', 'AL8G24940' => 'aly', 'Aqoxy3G01665' => 'aox', 'Aqoxy3G02853' => 'aox', 'Aqoxy5G01513' => 'aox', 'Aqoxy5G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8SKA4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ75LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKDA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0LJZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7REX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZP4YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWX7I5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2QKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS0L9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPCD8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q161UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC7XCF' => 'arhy', 'AT1G19100' => 'ath', 'AT4G24970' => 'ath', 'AT4G36270' => 'ath', 'AT4G36280' => 'ath', 'AT4G36290' => 'ath', 'AT5G13130' => 'ath', 'AT5G50780' => 'ath', 'ATR0582G266' => 'atr', 'ATR0661G195' => 'atr', 'ATR1152G031' => 'atr', 'Atru.chr11.2382' => 'acertr', 'Atru.chr12.2337' => 'acertr', 'Atru.chr3.744' => 'acertr', 'Atru.chr6.1870' => 'acertr', 'Atru.chr9.2515' => 'acertr', 'AUR62004120' => 'cqu', 'AUR62005667' => 'cqu', 'AUR62007634' => 'cqu', 'AUR62008186' => 'cqu', 'AUR62008187' => 'cqu', 'AUR62008188' => 'cqu', 'AUR62027954' => 'cqu', 'AUR62028766' => 'cqu', 'AUR62028767' => 'cqu', 'AUR62028768' => 'cqu', 'AUR62028886' => 'cqu', 'AUR62029563' => 'cqu', 'AUR62038832' => 'cqu', 'BcaB01g04149' => 'bca', 'BcaB03g12940' => 'bca', 'BcaB03g13090' => 'bca', 'BcaB03g14466' => 'bca', 'BcaB05g24035' => 'bca', 'BcaC01g06050' => 'bca', 'BcaC04g19148' => 'bca', 'BcaC04g20761' => 'bca', 'BcaC06g32845' => 'bca', 'BcaC07g41274' => 'bca', 'BcaC09g50827' => 'bca', 'BcaNung00741' => 'bca', 'BcaNung00742' => 'bca', 'BcaNung01859' => 'bca', 'BcaNung03985' => 'bca', 'BcaNung03989' => 'bca', 'BcaNung05661' => 'bca', 'BolC1t00257H' => 'bol', 'BolC1t01956H' => 'bol', 'BolC2t06534H' => 'bol', 'BolC3t14334H' => 'bol', 'BolC5t30451H' => 'bol', 'BolC7t45880H' => 'bol', 'BolC7t46586H' => 'bol', 'BolC8t49301H' => 'bol', 'BolC8t51837H' => 'bol', 'BolC9t56822H' => 'bol', 'BolC9t59235H' => 'bol', 'BraA01t00234Z' => 'bra', 'BraA01t01563Z' => 'bra', 'BraA02t05147Z' => 'bra', 'BraA03t10947Z' => 'bra', 'BraA03t14633Z' => 'bra', 'BraA08t35112Z' => 'bra', 'BraA09t41330Z' => 'bra', 'BraA10t44570Z' => 'bra', 'C01p02670' => 'bna', 'C01p20260' => 'bna', 'C02p05890' => 'bna', 'C03p19530' => 'bna', 'C05p17470' => 'bna', 'C07p53900' => 'bna', 'C07p61630' => 'bna', 'C08p16800' => 'bna', 'C08p42810' => 'bna', 'C09p39480' => 'bna', 'C09p63980' => 'bna', 'CAN.G1001.7' => 'can', 'CAN.G1034.55' => 'can', 'CAN.G143.7' => 'can', 'CAN.G3340.1' => 'can', 'CAN.G358.19' => 'can', 'CAN.G373.2' => 'can', 'CAN.G674.16' => 'can', 'CAN.G674.17' => 'can', 'CAN.G674.18' => 'can', 'CAN.G732.2' => 'can', 'CAN.G732.3' => 'can', 'CAN.G993.39' => 'can', 'CANSAT01G2052' => 'cansat', 'CANSAT80G0070' => 'cansat', 'CANSAT80G0483' => 'cansat', 'CANSAT80G0625' => 'cansat', 'CARHR019690' => 'chi', 'CARHR080280' => 'chi', 'CARHR152750' => 'chi', 'CARHR152760' => 'chi', 'CARHR152770' => 'chi', 'CARHR200340' => 'chi', 'CARHR232370' => 'chi', 'CARHR244670' => 'chi', 'CARHR244680' => 'chi', 'CARHR257520' => 'chi', 'Carub.0001s1872' => 'cru', 'Carub.0006s1130' => 'cru', 'Carub.0007s0396' => 'cru', 'Carub.0007s0397' => 'cru', 'Carub.0007s1608' => 'cru', 'Carub.0008s1068' => 'cru', 'Carub.0008s1077' => 'cru', 'Ca_16158_v3' => 'car', 'Ca_17571_v3' => 'car', 'Ca_21936_v3' => 'car', 'Ca_22350_v3' => 'car', 'CBR_g22445' => 'cbr', 'CBR_g26290' => 'cbr', 'Cc04_g09610' => 'ccan', 'Cc04_g12280' => 'ccan', 'Cc07_g10230' => 'ccan', 'CDE02G0093' => 'cde', 'CDE02G0701' => 'cde', 'CDE04G1050' => 'cde', 'CDE05G1833' => 'cde', 'CDE05G3058' => 'cde', 'CDE05G3380' => 'cde', 'CDE06G0536' => 'cde', 'Cfa006923' => 'cfa', 'Cfa009402' => 'cfa', 'Cfa018751' => 'cfa', 'Cfa019164' => 'cfa', 'Cfa022935' => 'cfa', 'Ciclev10019081m.g' => 'ccl', 'Ciclev10025076m.g' => 'ccl', 'Ciclev10030712m.g' => 'ccl', 'Ciclev10033760m.g' => 'ccl', 'CiPaw.05G105600' => 'cil', 'CiPaw.08G136700' => 'cil', 'CiPaw.11G003900' => 'cil', 'CiPaw.11G023700' => 'cil', 'CiPaw.12G003700' => 'cil', 'ClCG06G017100' => 'cla', 'ClCG06G018110' => 'cla', 'ClCG07G008800' => 'cla', 'ClCG07G015330' => 'cla', 'COL.COLO4_13698' => 'col', 'COL.COLO4_16659' => 'col', 'COL.COLO4_21986' => 'col', 'COL.COLO4_24049' => 'col', 'COL.COLO4_29061' => 'col', 'COL.COLO4_29075' => 'col', 'COL.COLO4_30094' => 'col', 'Cpa.g.c33689' => 'cpa', 'Cpa.g.sc108.39' => 'cpa', 'Cpa.g.sc108.41' => 'cpa', 'Cpa.g.sc1163.1' => 'cpa', 'Cpa.g.sc4.155' => 'cpa', 'Cpa.g.sc6.194' => 'cpa', 'CsaV3_1G000340' => 'csa', 'CsaV3_1G001400' => 'csa', 'CsaV3_4G002220' => 'csa', 'CsaV3_4G005370' => 'csa', 'CSS0007487' => 'camsi', 'CSS0008066' => 'camsi', 'CSS0009120' => 'camsi', 'CSS0015512' => 'camsi', 'CSS0022409' => 'camsi', 'CSS0025358' => 'camsi', 'CSS0044547' => 'camsi', 'DCAR_013057' => 'dca', 'DCAR_015058' => 'dca', 'DCAR_016027' => 'dca', 'DCAR_017327' => 'dca', 'DCAR_020743' => 'dca', 'DCAR_026157' => 'dca', 'DCAR_032339' => 'dca', 'DCAR_032340' => 'dca', 'Dinv11200' => 'din', 'Dinv11201' => 'din', 'Dinv20631' => 'din', 'Dinv23182' => 'din', 'Dinv33466' => 'din', 'Dinv33583' => 'din', 'Dinv38565' => 'din', 'Duzib068G0200' => 'dzi', 'Duzib147G0132' => 'dzi', 'Duzib147G0635' => 'dzi', 'Duzib205G1670' => 'dzi', 'Duzib251G0606' => 'dzi', 'ECA232G3336' => 'eca', 'ECA232G3763' => 'eca', 'ECA232G4845' => 'eca', 'ECA234G1607' => 'eca', 'ECA246G0932' => 'eca', 'ECA247G0781' => 'eca', 'ECA247G1932' => 'eca', 'ECA247G2079' => 'eca', 'ECA247G3338' => 'eca', 'ECA247G4115' => 'eca', 'EL10Ac3g06552' => 'bvu', 'EL10Ac5g10721' => 'bvu', 'EL10Ac5g10722' => 'bvu', 'EL10Ac5g10723' => 'bvu', 'EL10Ac5g11361' => 'bvu', 'EL10Ac6g13553' => 'bvu', 'EL10As8g23872' => 'bvu', 'Eucgr.B00250' => 'egr', 'Eucgr.B00251' => 'egr', 'Eucgr.B03533' => 'egr', 'Eucgr.I02381' => 'egr', 'Eucgr.K02700' => 'egr', 'FAN02G0174' => 'fan', 'FAN02G3146' => 'fan', 'FAN04G1672' => 'fan', 'FAN04G2273' => 'fan', 'FAN05G2791' => 'fan', 'FAN05G4035' => 'fan', 'FAN07G0834' => 'fan', 'FAN08G1198' => 'fan', 'FAN09G4182' => 'fan', 'FAN12G0496' => 'fan', 'FAN13G1027' => 'fan', 'FAN13G2951' => 'fan', 'FAN14G0705' => 'fan', 'FAN14G0720' => 'fan', 'FAN17G0201' => 'fan', 'FAN17G2665' => 'fan', 'FAN18G1456' => 'fan', 'FAN18G1525' => 'fan', 'FAN18G3500' => 'fan', 'FAN28G2670' => 'fan', 'FvH4_1g12391' => 'fve', 'FvH4_4g23220' => 'fve', 'FvH4_5g08810' => 'fve', 'FvH4_5g28960' => 'fve', 'FvH4_6g42820' => 'fve', 'FvH4_6g51110' => 'fve', 'Glyma.02G051802' => 'gma', 'Glyma.04G185300' => 'gma', 'Glyma.05G202900' => 'gma', 'Glyma.08G010300' => 'gma', 'Glyma.16G131900' => 'gma', 'Glyma.17G087900' => 'gma', 'Gohir.A07G048600' => 'ghi', 'Gohir.A11G179000' => 'ghi', 'Gohir.A12G140900' => 'ghi', 'Gohir.A12G140950' => 'ghi', 'Gohir.A12G191700' => 'ghi', 'Gohir.A13G086300' => 'ghi', 'Gohir.D07G052900' => 'ghi', 'Gohir.D11G186600' => 'ghi', 'Gohir.D12G145575' => 'ghi', 'Gohir.D12G145650' => 'ghi', 'Gohir.D12G145725' => 'ghi', 'Gohir.D12G194050' => 'ghi', 'Gohir.D13G091800' => 'ghi', 'Gorai.001G055900' => 'gra', 'Gorai.007G198400' => 'gra', 'Gorai.008G157000' => 'gra', 'Gorai.008G157100' => 'gra', 'Gorai.008G208700' => 'gra', 'Gorai.010G138700' => 'gra', 'GSVIVG01000977001' => 'vvi', 'GSVIVG01007708001' => 'vvi', 'GSVIVG01008587001' => 'vvi', 'GSVIVG01018849001' => 'vvi', 'GSVIVG01032432001' => 'vvi', 'HanXRQChr02g0034131' => 'han', 'HanXRQChr02g0035981' => 'han', 'HanXRQChr02g0035991' => 'han', 'HanXRQChr05g0155611' => 'han', 'HanXRQChr05g0155621' => 'han', 'HanXRQChr08g0236501' => 'han', 'HanXRQChr09g0261321' => 'han', 'HanXRQChr09g0272081' => 'han', 'HanXRQChr10g0310741' => 'han', 'HanXRQChr11g0325591' => 'han', 'HanXRQChr12g0385691' => 'han', 'HanXRQChr13g0387801' => 'han', 'HanXRQChr15g0463011' => 'han', 'Haze_03826' => 'cav', 'Haze_03827' => 'cav', 'Haze_07183' => 'cav', 'Haze_07537' => 'cav', 'Haze_07539' => 'cav', 'Haze_12461' => 'cav', 'Haze_16115' => 'cav', 'Haze_16808' => 'cav', 'Haze_18531' => 'cav', 'Hma1.2p1_0046F.1_g026700' => 'hma', 'Hma1.2p1_0046F.1_g026710' => 'hma', 'Hma1.2p1_0168F.1_g074340' => 'hma', 'Hma1.2p1_0266F.1_g107030' => 'hma', 'Hma1.2p1_0266F.1_g107060' => 'hma', 'Hma1.2p1_0275F.1_g110510' => 'hma', 'Hma1.2p1_0592F.1_g185490' => 'hma', 'Hma1.2p1_0592F.1_g185500' => 'hma', 'Hma1.2p1_0592F.1_g185510' => 'hma', 'Hma1.2p1_0592F.1_g185520' => 'hma', 'Hma1.2p1_0592F.1_g185530' => 'hma', 'Hma1.2p1_0818F.1_g223450' => 'hma', 'HPP92_009708' => 'vpl', 'HPP92_009793' => 'vpl', 'HPP92_009796' => 'vpl', 'HPP92_009797' => 'vpl', 'HPP92_014940' => 'vpl', 'HPP92_014988' => 'vpl', 'Hund02463' => 'sun', 'Hund02760' => 'sun', 'Hund05071' => 'sun', 'Hund10108' => 'sun', 'Hund11204' => 'sun', 'Hund14016' => 'sun', 'Hund16464' => 'sun', 'Lalb_Chr09g0333391' => 'lal', 'Lalb_Chr11g0070461' => 'lal', 'Lalb_Chr12g0201671' => 'lal', 'Lalb_Chr13g0297161' => 'lal', 'Lj1g0002823' => 'lja', 'Lj3C1074T6' => 'lonja', 'Lj4A212T28' => 'lonja', 'Lj4g0005516' => 'lja', 'Lj4g0013705' => 'lja', 'Lj4g0027865' => 'lja', 'Lj5C92G16' => 'lonja', 'Lj5C92T12' => 'lonja', 'Lj7C596T3' => 'lonja', 'Lj9A446G59' => 'lonja', 'Lj9A482G21' => 'lonja', 'Lsat_1_v5_gn_1_28261' => 'lsa', 'Lsat_1_v5_gn_1_28281' => 'lsa', 'Lsat_1_v5_gn_1_32721' => 'lsa', 'Lsat_1_v5_gn_4_151760' => 'lsa', 'Lsat_1_v5_gn_4_2120' => 'lsa', 'Lsat_1_v5_gn_4_75761' => 'lsa', 'Lsat_1_v5_gn_5_10920' => 'lsa', 'Manes.02G099900' => 'mes', 'Manes.11G096200' => 'mes', 'Manes.12G007200' => 'mes', 'Manes.14G048300' => 'mes', 'Manes.17G114700' => 'mes', 'Mapoly0002s0070' => 'mpo', 'Mapoly0029s0099' => 'mpo', 'MBI07_g24742_MAGBIO' => 'mbi', 'MBI10_g27988_MAGBIO' => 'mbi', 'MBI11_g13057_MAGBIO' => 'mbi', 'MD02G1137200' => 'mdo', 'MD06G1137200' => 'mdo', 'MD07G1122300' => 'mdo', 'MD09G1078200' => 'mdo', 'MD13G1123700' => 'mdo', 'MD14G1151900' => 'mdo', 'MD17G1030900' => 'mdo', 'MD17G1068200' => 'mdo', 'MD17G1068600' => 'mdo', 'Medtr3g077540' => 'mtr', 'Medtr4g105530' => 'mtr', 'Medtr8g076580' => 'mtr', 'Medtr8g076590' => 'mtr', 'Medtr8g096410' => 'mtr', 'MELO3C016411.2' => 'cme', 'MELO3C017780.2' => 'cme', 'MELO3C022560.2' => 'cme', 'MELO3C026187.2' => 'cme', 'MELO3C026286.2' => 'cme', 'MELO3C032854.2' => 'cme', 'Migut.H02495' => 'egut', 'Migut.I00561' => 'egut', 'Migut.K01015' => 'egut', 'Migut.K01016' => 'egut', 'Migut.L00743' => 'egut', 'Migut.L00744' => 'egut', 'Migut.L00746' => 'egut', 'Migut.L00798' => 'egut', 'Migut.L00799' => 'egut', 'Migut.N02096' => 'egut', 'MSTRG.11259' => 'ama', 'MSTRG.23142' => 'ama', 'MSTRG.2499' => 'ama', 'Nitab4.5_0000003g0730' => 'nta', 'Nitab4.5_0000137g0020' => 'nta', 'Nitab4.5_0000721g0210' => 'nta', 'Nitab4.5_0000723g0050' => 'nta', 'Nitab4.5_0000913g0070' => 'nta', 'Nitab4.5_0001332g0040' => 'nta', 'Nitab4.5_0001771g0050' => 'nta', 'Nitab4.5_0001918g0050' => 'nta', 'Nitab4.5_0002686g0030' => 'nta', 'Nitab4.5_0003156g0020' => 'nta', 'Nitab4.5_0003383g0040' => 'nta', 'Nitab4.5_0003918g0010' => 'nta', 'Nitab4.5_0006760g0010' => 'nta', 'Nn1g05981' => 'nnu', 'Nn1g06288' => 'nnu', 'Nn3g16371' => 'nnu', 'Nn3g16786' => 'nnu', 'Nn4g22232' => 'nnu', 'Oeu005144.1' => 'oeu', 'Oeu005145.1' => 'oeu', 'Oeu011348.1' => 'oeu', 'Oeu016415.1' => 'oeu', 'Oeu023501.1' => 'oeu', 'Oeu044473.1' => 'oeu', 'Oeu048892.2' => 'oeu', 'Os01g0549200' => 'osa', 'Os02g0469300' => 'osa', 'Os04g0311100' => 'osa', 'Os06g0474900' => 'osa', 'Os10g0181700' => 'osa', 'Os11g0454800' => 'osa', 'Peaxi162Scf00037g00714' => 'pax', 'Peaxi162Scf00084g01217' => 'pax', 'Peaxi162Scf00257g00217' => 'pax', 'Peaxi162Scf00516g00215' => 'pax', 'Peaxi162Scf00689g00123' => 'pax', 'PGR044G2719' => 'pgr', 'PGR083G1360' => 'pgr', 'PGR102G2849' => 'pgr', 'PGR119G2534' => 'pgr', 'PGSC0003DMG400003538' => 'stu', 'PGSC0003DMG400028138' => 'stu', 'PGSC0003DMG400031732' => 'stu', 'PGSC0003DMG400038165' => 'stu', 'Phvul.002G284600' => 'pvu', 'Phvul.003G258200' => 'pvu', 'Phvul.009G176500' => 'pvu', 'Potri.003G167201' => 'ptr', 'Potri.005G118400' => 'ptr', 'Potri.012G089000' => 'ptr', 'Potri.012G102800' => 'ptr', 'Potri.015G079400' => 'ptr', 'Potri.015G100900' => 'ptr', 'Pp3c14_9810' => 'ppa', 'Pp3c15_10450' => 'ppa', 'Pp3c20_19150' => 'ppa', 'Pp3c23_12740' => 'ppa', 'Pp3c23_6310' => 'ppa', 'Pp3c24_3720' => 'ppa', 'Pp3c27_2580' => 'ppa', 'Pp3c9_8990' => 'ppa', 'PRCOL_00002854' => 'pco', 'Prupe.1G221200' => 'ppe', 'Prupe.3G289000' => 'ppe', 'Prupe.5G147000' => 'ppe', 'Prupe.6G157300' => 'ppe', 'Prupe.7G163400' => 'ppe', 'Psat0s2177g0040' => 'psa', 'Psat3g174760' => 'psa', 'Psat3g192160' => 'psa', 'Psat4g058520' => 'psa', 'Psat4g096840' => 'psa', 'Psat7g037320' => 'psa', 'PSO017G1274' => 'pso', 'PSO017G5166' => 'pso', 'PSO063G4558' => 'pso', 'PSO170G4458' => 'pso', 'PSO170G5005' => 'pso', 'PSO210G6156' => 'pso', 'PSO210G6635' => 'pso', 'PSO210G7397' => 'pso', 'PSO210G7700' => 'pso', 'PSO455G0035' => 'pso', 'PSO455G0180' => 'pso', 'PSO478G4515' => 'pso', 'PSO832G1305' => 'pso', 'PSO832G3489' => 'pso', 'QL02p075247' => 'qlo', 'QL03p051148' => 'qlo', 'QL05p010313' => 'qlo', 'QL06p034627' => 'qlo', 'QL10p001889' => 'qlo', 'QL10p010846' => 'qlo', 'RcHm_v2.0_Chr1g0350621' => 'rch', 'RcHm_v2.0_Chr1g0350641' => 'rch', 'RcHm_v2.0_Chr2g0092891' => 'rch', 'RcHm_v2.0_Chr2g0100251' => 'rch', 'RcHm_v2.0_Chr2g0158661' => 'rch', 'RcHm_v2.0_Chr2g0172741' => 'rch', 'RcHm_v2.0_Chr4g0429571' => 'rch', 'RcHm_v2.0_Chr5g0042471' => 'rch', 'RcHm_v2.0_Chr7g0189451' => 'rch', 'Rhsim08G0052000' => 'rsi', 'Rhsim08G0174400' => 'rsi', 'Rhsim08G0193200' => 'rsi', 'Rhsim10G0214800' => 'rsi', 'Rhsim10G0214900' => 'rsi', 'Rhsim10G0215000' => 'rsi', 'Rhsim12G0022900' => 'rsi', 'Rhsim12G0177500' => 'rsi', 'Rhsim12G0177700' => 'rsi', 'Sabra03G0122600' => 'sbr', 'Sabra05G0097400' => 'sbr', 'Sabra12G0064100' => 'sbr', 'Sabra15G0121300' => 'sbr', 'SalBow2G0642' => 'sbo', 'SalBow5G2667' => 'sbo', 'SalBow5G4873' => 'sbo', 'SalBow8G2395' => 'sbo', 'Sc03g0003290' => 'sci', 'Sc10g0010130' => 'sci', 'Sc22g0003650' => 'sci', 'Sed0001603' => 'sed', 'Sed0004259' => 'sed', 'Sed0006789' => 'sed', 'Sed0011838' => 'sed', 'Sed0012964' => 'sed', 'Sed0016383' => 'sed', 'Sed0019010' => 'sed', 'Sed0020188' => 'sed', 'SEGI_04702' => 'sgi', 'SEGI_17231' => 'sgi', 'SEGI_18877' => 'sgi', 'SEGI_25196' => 'sgi', 'SEGI_25515' => 'sgi', 'SEGI_28445' => 'sgi', 'SEGI_37452' => 'sgi', 'SGA_v2.0_scaffold188G40336' => 'sas', 'SGA_v2.0_scaffold228G43247' => 'sas', 'SGA_v2.0_scaffold280G46853' => 'sas', 'SGA_v2.0_scaffold34G13808' => 'sas', 'SGA_v2.0_scaffold40G15576' => 'sas', 'SGA_v2.0_scaffold611G53188' => 'sas', 'SGA_v2.0_scaffold78G25461' => 'sas', 'SGA_v2.0_scaffold90G27888' => 'sas', 'SHI08601' => 'shi', 'SHI08606' => 'shi', 'SHI17117' => 'shi', 'SHI17119' => 'shi', 'SMO118G0201' => 'smo', 'SMO169G0247' => 'smo', 'SMO176G0006' => 'smo', 'SMO176G0015' => 'smo', 'SMO202G0006' => 'smo', 'SMO240G0050' => 'smo', 'SMO286G0009' => 'smo', 'SMO338G0033' => 'smo', 'SMO356G0533' => 'smo', 'SMO364G0382' => 'smo', 'SMO367G0166' => 'smo', 'SMO367G1098' => 'smo', 'Solyc01g009920.3' => 'sly', 'Solyc01g099300.3' => 'sly', 'Solyc02g084700.3' => 'sly', 'Solyc03g097520.3' => 'sly', 'Solyc06g071580.3' => 'sly', 'Solyc10g081760.3' => 'sly', 'Sopen01g005480' => 'spe', 'Sopen01g042850' => 'spe', 'Sopen02g029370' => 'spe', 'Sopen03g028280' => 'spe', 'Sopen06g027870' => 'spe', 'Sopen10g032270' => 'spe', 'Sp5g18180' => 'spa', 'Sp6g12880' => 'spa', 'Sp6g30850' => 'spa', 'Sp7g22960' => 'spa', 'Sp7g34010' => 'spa', 'SpUn1326_0010' => 'spa', 'TAR371G0242' => 'tar', 'TAR622G0638' => 'tar', 'TAR628G1548' => 'tar', 'TAR629G1079' => 'tar', 'TAR629G3413' => 'tar', 'THA.LOC104804249' => 'tha', 'THA.LOC104808315' => 'tha', 'THA.LOC104809238' => 'tha', 'THA.LOC104825484' => 'tha', 'Thecc.01G025500' => 'tca', 'Thecc.03G015800' => 'tca', 'Thecc.03G018000' => 'tca', 'Thecc.03G134800' => 'tca', 'Thecc.04G014700' => 'tca', 'Thhalv10006991m.g' => 'esa', 'Thhalv10012707m.g' => 'esa', 'Thhalv10015739m.g' => 'esa', 'Thhalv10024553m.g' => 'esa', 'Thhalv10024673m.g' => 'esa', 'Thhalv10029187m.g' => 'esa', 'TPR.G12971' => 'tpr', 'TPR.G29396' => 'tpr', 'TPR.G33376' => 'tpr', 'TPR.G35508' => 'tpr', 'TPR.G35516' => 'tpr', 'TPR.G37317' => 'tpr', 'TPR.G37389' => 'tpr', 'TPR.G37523' => 'tpr', 'TPR.G559' => 'tpr', 'TWI14G0070' => 'twi', 'TWI14G0729' => 'twi', 'TWI18G0596' => 'twi', 'TWI39G0780' => 'twi', 'TWI39G0850' => 'twi', 'TWI73G1052' => 'twi', 'unitig_52.g17485' => 'ugi', 'unitig_61.g26355' => 'ugi', 'vmacro01040' => 'vma', 'vmacro16731' => 'vma', 'vmacro18270' => 'vma', 'vmacro19142' => 'vma', 'vmacro19407' => 'vma', 'vmacro19408' => 'vma', 'vmacro21899' => 'vma', 'vmacro21900' => 'vma', 'vmacro21901' => 'vma', 'VMungo0251G0490' => 'vmu', 'VMungo0251G1748' => 'vmu', 'VMungo1309G0421' => 'vmu', 'Zm00001eb086500' => 'zma', 'Zm00001eb150680' => 'zma', 'Zm00001eb162330' => 'zma', 'Zm00001eb203130' => 'zma', 'Zm00001eb369480' => 'zma', 'Zm00001eb382340' => 'zma', 'Zm00001eb416360' => 'zma' ) $gf_id = 'HOM05D000902' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000902' ) $data_identifier = 'HOM05D000902' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 13, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 10, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 6, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 9, 'hma' => (int) 12, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 4, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 6, 'ppa' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 6, 'rch' => (int) 9, 'rsi' => (int) 9, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 12, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 3, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416360' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000902', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '663', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02470' => 'bna', 'A01p16260' => 'bna', 'A02p01680' => 'bna', 'A03p16600' => 'bna', 'A03p55660' => 'bna', 'A03p64160' => 'bna', 'A03p64170' => 'bna', 'A08p31900' => 'bna', 'A09p59530' => 'bna', 'A10p08230' => 'bna', 'A10p25090' => 'bna', 'Aa31LG3G7100' => 'aar', 'Aa31LG3G7110' => 'aar', 'Aa31LG6G13160' => 'aar', 'Aa31LG7G10770' => 'aar', 'Aa31LG7G3830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2723' => 'aag', 'Actinidia08045' => 'ach', 'Actinidia08888' => 'ach', 'Actinidia18333' => 'ach', 'Actinidia19334' => 'ach', 'Actinidia25552' => 'ach', 'Actinidia26089' => 'ach', 'Actinidia30615' => 'ach', 'Actinidia30616' => 'ach', 'Actinidia33083' => 'ach', 'Actinidia35762' => 'ach', 'Ah.02g110620' => 'amhyb', 'Ah.11g046390' => 'amhyb', 'AL1G31670' => 'aly', 'AL6G23730' => 'aly', 'AL7G14740' => 'aly', 'AL7G14750' => 'aly', 'AL7G14760' => 'aly', 'AL7G28220' => 'aly', 'AL8G24940' => 'aly', 'Aqoxy3G01665' => 'aox', 'Aqoxy3G02853' => 'aox', 'Aqoxy5G01513' => 'aox', 'Aqoxy5G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8SKA4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ75LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKDA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0LJZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7REX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZP4YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWX7I5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2QKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS0L9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPCD8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q161UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC7XCF' => 'arhy', 'AT1G19100' => 'ath', 'AT4G24970' => 'ath', 'AT4G36270' => 'ath', 'AT4G36280' => 'ath', 'AT4G36290' => 'ath', 'AT5G13130' => 'ath', 'AT5G50780' => 'ath', 'ATR0582G266' => 'atr', 'ATR0661G195' => 'atr', 'ATR1152G031' => 'atr', 'Atru.chr11.2382' => 'acertr', 'Atru.chr12.2337' => 'acertr', 'Atru.chr3.744' => 'acertr', 'Atru.chr6.1870' => 'acertr', 'Atru.chr9.2515' => 'acertr', 'AUR62004120' => 'cqu', 'AUR62005667' => 'cqu', 'AUR62007634' => 'cqu', 'AUR62008186' => 'cqu', 'AUR62008187' => 'cqu', 'AUR62008188' => 'cqu', 'AUR62027954' => 'cqu', 'AUR62028766' => 'cqu', 'AUR62028767' => 'cqu', 'AUR62028768' => 'cqu', 'AUR62028886' => 'cqu', 'AUR62029563' => 'cqu', 'AUR62038832' => 'cqu', 'BcaB01g04149' => 'bca', 'BcaB03g12940' => 'bca', 'BcaB03g13090' => 'bca', 'BcaB03g14466' => 'bca', 'BcaB05g24035' => 'bca', 'BcaC01g06050' => 'bca', 'BcaC04g19148' => 'bca', 'BcaC04g20761' => 'bca', 'BcaC06g32845' => 'bca', 'BcaC07g41274' => 'bca', 'BcaC09g50827' => 'bca', 'BcaNung00741' => 'bca', 'BcaNung00742' => 'bca', 'BcaNung01859' => 'bca', 'BcaNung03985' => 'bca', 'BcaNung03989' => 'bca', 'BcaNung05661' => 'bca', 'BolC1t00257H' => 'bol', 'BolC1t01956H' => 'bol', 'BolC2t06534H' => 'bol', 'BolC3t14334H' => 'bol', 'BolC5t30451H' => 'bol', 'BolC7t45880H' => 'bol', 'BolC7t46586H' => 'bol', 'BolC8t49301H' => 'bol', 'BolC8t51837H' => 'bol', 'BolC9t56822H' => 'bol', 'BolC9t59235H' => 'bol', 'BraA01t00234Z' => 'bra', 'BraA01t01563Z' => 'bra', 'BraA02t05147Z' => 'bra', 'BraA03t10947Z' => 'bra', 'BraA03t14633Z' => 'bra', 'BraA08t35112Z' => 'bra', 'BraA09t41330Z' => 'bra', 'BraA10t44570Z' => 'bra', 'C01p02670' => 'bna', 'C01p20260' => 'bna', 'C02p05890' => 'bna', 'C03p19530' => 'bna', 'C05p17470' => 'bna', 'C07p53900' => 'bna', 'C07p61630' => 'bna', 'C08p16800' => 'bna', 'C08p42810' => 'bna', 'C09p39480' => 'bna', 'C09p63980' => 'bna', 'CAN.G1001.7' => 'can', 'CAN.G1034.55' => 'can', 'CAN.G143.7' => 'can', 'CAN.G3340.1' => 'can', 'CAN.G358.19' => 'can', 'CAN.G373.2' => 'can', 'CAN.G674.16' => 'can', 'CAN.G674.17' => 'can', 'CAN.G674.18' => 'can', 'CAN.G732.2' => 'can', 'CAN.G732.3' => 'can', 'CAN.G993.39' => 'can', 'CANSAT01G2052' => 'cansat', 'CANSAT80G0070' => 'cansat', 'CANSAT80G0483' => 'cansat', 'CANSAT80G0625' => 'cansat', 'CARHR019690' => 'chi', 'CARHR080280' => 'chi', 'CARHR152750' => 'chi', 'CARHR152760' => 'chi', 'CARHR152770' => 'chi', 'CARHR200340' => 'chi', 'CARHR232370' => 'chi', 'CARHR244670' => 'chi', 'CARHR244680' => 'chi', 'CARHR257520' => 'chi', 'Carub.0001s1872' => 'cru', 'Carub.0006s1130' => 'cru', 'Carub.0007s0396' => 'cru', 'Carub.0007s0397' => 'cru', 'Carub.0007s1608' => 'cru', 'Carub.0008s1068' => 'cru', 'Carub.0008s1077' => 'cru', 'Ca_16158_v3' => 'car', 'Ca_17571_v3' => 'car', 'Ca_21936_v3' => 'car', 'Ca_22350_v3' => 'car', 'CBR_g22445' => 'cbr', 'CBR_g26290' => 'cbr', 'Cc04_g09610' => 'ccan', 'Cc04_g12280' => 'ccan', 'Cc07_g10230' => 'ccan', 'CDE02G0093' => 'cde', 'CDE02G0701' => 'cde', 'CDE04G1050' => 'cde', 'CDE05G1833' => 'cde', 'CDE05G3058' => 'cde', 'CDE05G3380' => 'cde', 'CDE06G0536' => 'cde', 'Cfa006923' => 'cfa', 'Cfa009402' => 'cfa', 'Cfa018751' => 'cfa', 'Cfa019164' => 'cfa', 'Cfa022935' => 'cfa', 'Ciclev10019081m.g' => 'ccl', 'Ciclev10025076m.g' => 'ccl', 'Ciclev10030712m.g' => 'ccl', 'Ciclev10033760m.g' => 'ccl', 'CiPaw.05G105600' => 'cil', 'CiPaw.08G136700' => 'cil', 'CiPaw.11G003900' => 'cil', 'CiPaw.11G023700' => 'cil', 'CiPaw.12G003700' => 'cil', 'ClCG06G017100' => 'cla', 'ClCG06G018110' => 'cla', 'ClCG07G008800' => 'cla', 'ClCG07G015330' => 'cla', 'COL.COLO4_13698' => 'col', 'COL.COLO4_16659' => 'col', 'COL.COLO4_21986' => 'col', 'COL.COLO4_24049' => 'col', 'COL.COLO4_29061' => 'col', 'COL.COLO4_29075' => 'col', 'COL.COLO4_30094' => 'col', 'Cpa.g.c33689' => 'cpa', 'Cpa.g.sc108.39' => 'cpa', 'Cpa.g.sc108.41' => 'cpa', 'Cpa.g.sc1163.1' => 'cpa', 'Cpa.g.sc4.155' => 'cpa', 'Cpa.g.sc6.194' => 'cpa', 'CsaV3_1G000340' => 'csa', 'CsaV3_1G001400' => 'csa', 'CsaV3_4G002220' => 'csa', 'CsaV3_4G005370' => 'csa', 'CSS0007487' => 'camsi', 'CSS0008066' => 'camsi', 'CSS0009120' => 'camsi', 'CSS0015512' => 'camsi', 'CSS0022409' => 'camsi', 'CSS0025358' => 'camsi', 'CSS0044547' => 'camsi', 'DCAR_013057' => 'dca', 'DCAR_015058' => 'dca', 'DCAR_016027' => 'dca', 'DCAR_017327' => 'dca', 'DCAR_020743' => 'dca', 'DCAR_026157' => 'dca', 'DCAR_032339' => 'dca', 'DCAR_032340' => 'dca', 'Dinv11200' => 'din', 'Dinv11201' => 'din', 'Dinv20631' => 'din', 'Dinv23182' => 'din', 'Dinv33466' => 'din', 'Dinv33583' => 'din', 'Dinv38565' => 'din', 'Duzib068G0200' => 'dzi', 'Duzib147G0132' => 'dzi', 'Duzib147G0635' => 'dzi', 'Duzib205G1670' => 'dzi', 'Duzib251G0606' => 'dzi', 'ECA232G3336' => 'eca', 'ECA232G3763' => 'eca', 'ECA232G4845' => 'eca', 'ECA234G1607' => 'eca', 'ECA246G0932' => 'eca', 'ECA247G0781' => 'eca', 'ECA247G1932' => 'eca', 'ECA247G2079' => 'eca', 'ECA247G3338' => 'eca', 'ECA247G4115' => 'eca', 'EL10Ac3g06552' => 'bvu', 'EL10Ac5g10721' => 'bvu', 'EL10Ac5g10722' => 'bvu', 'EL10Ac5g10723' => 'bvu', 'EL10Ac5g11361' => 'bvu', 'EL10Ac6g13553' => 'bvu', 'EL10As8g23872' => 'bvu', 'Eucgr.B00250' => 'egr', 'Eucgr.B00251' => 'egr', 'Eucgr.B03533' => 'egr', 'Eucgr.I02381' => 'egr', 'Eucgr.K02700' => 'egr', 'FAN02G0174' => 'fan', 'FAN02G3146' => 'fan', 'FAN04G1672' => 'fan', 'FAN04G2273' => 'fan', 'FAN05G2791' => 'fan', 'FAN05G4035' => 'fan', 'FAN07G0834' => 'fan', 'FAN08G1198' => 'fan', 'FAN09G4182' => 'fan', 'FAN12G0496' => 'fan', 'FAN13G1027' => 'fan', 'FAN13G2951' => 'fan', 'FAN14G0705' => 'fan', 'FAN14G0720' => 'fan', 'FAN17G0201' => 'fan', 'FAN17G2665' => 'fan', 'FAN18G1456' => 'fan', 'FAN18G1525' => 'fan', 'FAN18G3500' => 'fan', 'FAN28G2670' => 'fan', 'FvH4_1g12391' => 'fve', 'FvH4_4g23220' => 'fve', 'FvH4_5g08810' => 'fve', 'FvH4_5g28960' => 'fve', 'FvH4_6g42820' => 'fve', 'FvH4_6g51110' => 'fve', 'Glyma.02G051802' => 'gma', 'Glyma.04G185300' => 'gma', 'Glyma.05G202900' => 'gma', 'Glyma.08G010300' => 'gma', 'Glyma.16G131900' => 'gma', 'Glyma.17G087900' => 'gma', 'Gohir.A07G048600' => 'ghi', 'Gohir.A11G179000' => 'ghi', 'Gohir.A12G140900' => 'ghi', 'Gohir.A12G140950' => 'ghi', 'Gohir.A12G191700' => 'ghi', 'Gohir.A13G086300' => 'ghi', 'Gohir.D07G052900' => 'ghi', 'Gohir.D11G186600' => 'ghi', 'Gohir.D12G145575' => 'ghi', 'Gohir.D12G145650' => 'ghi', 'Gohir.D12G145725' => 'ghi', 'Gohir.D12G194050' => 'ghi', 'Gohir.D13G091800' => 'ghi', 'Gorai.001G055900' => 'gra', 'Gorai.007G198400' => 'gra', 'Gorai.008G157000' => 'gra', 'Gorai.008G157100' => 'gra', 'Gorai.008G208700' => 'gra', 'Gorai.010G138700' => 'gra', 'GSVIVG01000977001' => 'vvi', 'GSVIVG01007708001' => 'vvi', 'GSVIVG01008587001' => 'vvi', 'GSVIVG01018849001' => 'vvi', 'GSVIVG01032432001' => 'vvi', 'HanXRQChr02g0034131' => 'han', 'HanXRQChr02g0035981' => 'han', 'HanXRQChr02g0035991' => 'han', 'HanXRQChr05g0155611' => 'han', 'HanXRQChr05g0155621' => 'han', 'HanXRQChr08g0236501' => 'han', 'HanXRQChr09g0261321' => 'han', 'HanXRQChr09g0272081' => 'han', 'HanXRQChr10g0310741' => 'han', 'HanXRQChr11g0325591' => 'han', 'HanXRQChr12g0385691' => 'han', 'HanXRQChr13g0387801' => 'han', 'HanXRQChr15g0463011' => 'han', 'Haze_03826' => 'cav', 'Haze_03827' => 'cav', 'Haze_07183' => 'cav', 'Haze_07537' => 'cav', 'Haze_07539' => 'cav', 'Haze_12461' => 'cav', 'Haze_16115' => 'cav', 'Haze_16808' => 'cav', 'Haze_18531' => 'cav', 'Hma1.2p1_0046F.1_g026700' => 'hma', 'Hma1.2p1_0046F.1_g026710' => 'hma', 'Hma1.2p1_0168F.1_g074340' => 'hma', 'Hma1.2p1_0266F.1_g107030' => 'hma', 'Hma1.2p1_0266F.1_g107060' => 'hma', 'Hma1.2p1_0275F.1_g110510' => 'hma', 'Hma1.2p1_0592F.1_g185490' => 'hma', 'Hma1.2p1_0592F.1_g185500' => 'hma', 'Hma1.2p1_0592F.1_g185510' => 'hma', 'Hma1.2p1_0592F.1_g185520' => 'hma', 'Hma1.2p1_0592F.1_g185530' => 'hma', 'Hma1.2p1_0818F.1_g223450' => 'hma', 'HPP92_009708' => 'vpl', 'HPP92_009793' => 'vpl', 'HPP92_009796' => 'vpl', 'HPP92_009797' => 'vpl', 'HPP92_014940' => 'vpl', 'HPP92_014988' => 'vpl', 'Hund02463' => 'sun', 'Hund02760' => 'sun', 'Hund05071' => 'sun', 'Hund10108' => 'sun', 'Hund11204' => 'sun', 'Hund14016' => 'sun', 'Hund16464' => 'sun', 'Lalb_Chr09g0333391' => 'lal', 'Lalb_Chr11g0070461' => 'lal', 'Lalb_Chr12g0201671' => 'lal', 'Lalb_Chr13g0297161' => 'lal', 'Lj1g0002823' => 'lja', 'Lj3C1074T6' => 'lonja', 'Lj4A212T28' => 'lonja', 'Lj4g0005516' => 'lja', 'Lj4g0013705' => 'lja', 'Lj4g0027865' => 'lja', 'Lj5C92G16' => 'lonja', 'Lj5C92T12' => 'lonja', 'Lj7C596T3' => 'lonja', 'Lj9A446G59' => 'lonja', 'Lj9A482G21' => 'lonja', 'Lsat_1_v5_gn_1_28261' => 'lsa', 'Lsat_1_v5_gn_1_28281' => 'lsa', 'Lsat_1_v5_gn_1_32721' => 'lsa', 'Lsat_1_v5_gn_4_151760' => 'lsa', 'Lsat_1_v5_gn_4_2120' => 'lsa', 'Lsat_1_v5_gn_4_75761' => 'lsa', 'Lsat_1_v5_gn_5_10920' => 'lsa', 'Manes.02G099900' => 'mes', 'Manes.11G096200' => 'mes', 'Manes.12G007200' => 'mes', 'Manes.14G048300' => 'mes', 'Manes.17G114700' => 'mes', 'Mapoly0002s0070' => 'mpo', 'Mapoly0029s0099' => 'mpo', 'MBI07_g24742_MAGBIO' => 'mbi', 'MBI10_g27988_MAGBIO' => 'mbi', 'MBI11_g13057_MAGBIO' => 'mbi', 'MD02G1137200' => 'mdo', 'MD06G1137200' => 'mdo', 'MD07G1122300' => 'mdo', 'MD09G1078200' => 'mdo', 'MD13G1123700' => 'mdo', 'MD14G1151900' => 'mdo', 'MD17G1030900' => 'mdo', 'MD17G1068200' => 'mdo', 'MD17G1068600' => 'mdo', 'Medtr3g077540' => 'mtr', 'Medtr4g105530' => 'mtr', 'Medtr8g076580' => 'mtr', 'Medtr8g076590' => 'mtr', 'Medtr8g096410' => 'mtr', 'MELO3C016411.2' => 'cme', 'MELO3C017780.2' => 'cme', 'MELO3C022560.2' => 'cme', 'MELO3C026187.2' => 'cme', 'MELO3C026286.2' => 'cme', 'MELO3C032854.2' => 'cme', 'Migut.H02495' => 'egut', 'Migut.I00561' => 'egut', 'Migut.K01015' => 'egut', 'Migut.K01016' => 'egut', 'Migut.L00743' => 'egut', 'Migut.L00744' => 'egut', 'Migut.L00746' => 'egut', 'Migut.L00798' => 'egut', 'Migut.L00799' => 'egut', 'Migut.N02096' => 'egut', 'MSTRG.11259' => 'ama', 'MSTRG.23142' => 'ama', 'MSTRG.2499' => 'ama', 'Nitab4.5_0000003g0730' => 'nta', 'Nitab4.5_0000137g0020' => 'nta', 'Nitab4.5_0000721g0210' => 'nta', 'Nitab4.5_0000723g0050' => 'nta', 'Nitab4.5_0000913g0070' => 'nta', 'Nitab4.5_0001332g0040' => 'nta', 'Nitab4.5_0001771g0050' => 'nta', 'Nitab4.5_0001918g0050' => 'nta', 'Nitab4.5_0002686g0030' => 'nta', 'Nitab4.5_0003156g0020' => 'nta', 'Nitab4.5_0003383g0040' => 'nta', 'Nitab4.5_0003918g0010' => 'nta', 'Nitab4.5_0006760g0010' => 'nta', 'Nn1g05981' => 'nnu', 'Nn1g06288' => 'nnu', 'Nn3g16371' => 'nnu', 'Nn3g16786' => 'nnu', 'Nn4g22232' => 'nnu', 'Oeu005144.1' => 'oeu', 'Oeu005145.1' => 'oeu', 'Oeu011348.1' => 'oeu', 'Oeu016415.1' => 'oeu', 'Oeu023501.1' => 'oeu', 'Oeu044473.1' => 'oeu', 'Oeu048892.2' => 'oeu', 'Os01g0549200' => 'osa', 'Os02g0469300' => 'osa', 'Os04g0311100' => 'osa', 'Os06g0474900' => 'osa', 'Os10g0181700' => 'osa', 'Os11g0454800' => 'osa', 'Peaxi162Scf00037g00714' => 'pax', 'Peaxi162Scf00084g01217' => 'pax', 'Peaxi162Scf00257g00217' => 'pax', 'Peaxi162Scf00516g00215' => 'pax', 'Peaxi162Scf00689g00123' => 'pax', 'PGR044G2719' => 'pgr', 'PGR083G1360' => 'pgr', 'PGR102G2849' => 'pgr', 'PGR119G2534' => 'pgr', 'PGSC0003DMG400003538' => 'stu', 'PGSC0003DMG400028138' => 'stu', 'PGSC0003DMG400031732' => 'stu', 'PGSC0003DMG400038165' => 'stu', 'Phvul.002G284600' => 'pvu', 'Phvul.003G258200' => 'pvu', 'Phvul.009G176500' => 'pvu', 'Potri.003G167201' => 'ptr', 'Potri.005G118400' => 'ptr', 'Potri.012G089000' => 'ptr', 'Potri.012G102800' => 'ptr', 'Potri.015G079400' => 'ptr', 'Potri.015G100900' => 'ptr', 'Pp3c14_9810' => 'ppa', 'Pp3c15_10450' => 'ppa', 'Pp3c20_19150' => 'ppa', 'Pp3c23_12740' => 'ppa', 'Pp3c23_6310' => 'ppa', 'Pp3c24_3720' => 'ppa', 'Pp3c27_2580' => 'ppa', 'Pp3c9_8990' => 'ppa', 'PRCOL_00002854' => 'pco', 'Prupe.1G221200' => 'ppe', 'Prupe.3G289000' => 'ppe', 'Prupe.5G147000' => 'ppe', 'Prupe.6G157300' => 'ppe', 'Prupe.7G163400' => 'ppe', 'Psat0s2177g0040' => 'psa', 'Psat3g174760' => 'psa', 'Psat3g192160' => 'psa', 'Psat4g058520' => 'psa', 'Psat4g096840' => 'psa', 'Psat7g037320' => 'psa', 'PSO017G1274' => 'pso', 'PSO017G5166' => 'pso', 'PSO063G4558' => 'pso', 'PSO170G4458' => 'pso', 'PSO170G5005' => 'pso', 'PSO210G6156' => 'pso', 'PSO210G6635' => 'pso', 'PSO210G7397' => 'pso', 'PSO210G7700' => 'pso', 'PSO455G0035' => 'pso', 'PSO455G0180' => 'pso', 'PSO478G4515' => 'pso', 'PSO832G1305' => 'pso', 'PSO832G3489' => 'pso', 'QL02p075247' => 'qlo', 'QL03p051148' => 'qlo', 'QL05p010313' => 'qlo', 'QL06p034627' => 'qlo', 'QL10p001889' => 'qlo', 'QL10p010846' => 'qlo', 'RcHm_v2.0_Chr1g0350621' => 'rch', 'RcHm_v2.0_Chr1g0350641' => 'rch', 'RcHm_v2.0_Chr2g0092891' => 'rch', 'RcHm_v2.0_Chr2g0100251' => 'rch', 'RcHm_v2.0_Chr2g0158661' => 'rch', 'RcHm_v2.0_Chr2g0172741' => 'rch', 'RcHm_v2.0_Chr4g0429571' => 'rch', 'RcHm_v2.0_Chr5g0042471' => 'rch', 'RcHm_v2.0_Chr7g0189451' => 'rch', 'Rhsim08G0052000' => 'rsi', 'Rhsim08G0174400' => 'rsi', 'Rhsim08G0193200' => 'rsi', 'Rhsim10G0214800' => 'rsi', 'Rhsim10G0214900' => 'rsi', 'Rhsim10G0215000' => 'rsi', 'Rhsim12G0022900' => 'rsi', 'Rhsim12G0177500' => 'rsi', 'Rhsim12G0177700' => 'rsi', 'Sabra03G0122600' => 'sbr', 'Sabra05G0097400' => 'sbr', 'Sabra12G0064100' => 'sbr', 'Sabra15G0121300' => 'sbr', 'SalBow2G0642' => 'sbo', 'SalBow5G2667' => 'sbo', 'SalBow5G4873' => 'sbo', 'SalBow8G2395' => 'sbo', 'Sc03g0003290' => 'sci', 'Sc10g0010130' => 'sci', 'Sc22g0003650' => 'sci', 'Sed0001603' => 'sed', 'Sed0004259' => 'sed', 'Sed0006789' => 'sed', 'Sed0011838' => 'sed', 'Sed0012964' => 'sed', 'Sed0016383' => 'sed', 'Sed0019010' => 'sed', 'Sed0020188' => 'sed', 'SEGI_04702' => 'sgi', 'SEGI_17231' => 'sgi', 'SEGI_18877' => 'sgi', 'SEGI_25196' => 'sgi', 'SEGI_25515' => 'sgi', 'SEGI_28445' => 'sgi', 'SEGI_37452' => 'sgi', 'SGA_v2.0_scaffold188G40336' => 'sas', 'SGA_v2.0_scaffold228G43247' => 'sas', 'SGA_v2.0_scaffold280G46853' => 'sas', 'SGA_v2.0_scaffold34G13808' => 'sas', 'SGA_v2.0_scaffold40G15576' => 'sas', 'SGA_v2.0_scaffold611G53188' => 'sas', 'SGA_v2.0_scaffold78G25461' => 'sas', 'SGA_v2.0_scaffold90G27888' => 'sas', 'SHI08601' => 'shi', 'SHI08606' => 'shi', 'SHI17117' => 'shi', 'SHI17119' => 'shi', 'SMO118G0201' => 'smo', 'SMO169G0247' => 'smo', 'SMO176G0006' => 'smo', 'SMO176G0015' => 'smo', 'SMO202G0006' => 'smo', 'SMO240G0050' => 'smo', 'SMO286G0009' => 'smo', 'SMO338G0033' => 'smo', 'SMO356G0533' => 'smo', 'SMO364G0382' => 'smo', 'SMO367G0166' => 'smo', 'SMO367G1098' => 'smo', 'Solyc01g009920.3' => 'sly', 'Solyc01g099300.3' => 'sly', 'Solyc02g084700.3' => 'sly', 'Solyc03g097520.3' => 'sly', 'Solyc06g071580.3' => 'sly', 'Solyc10g081760.3' => 'sly', 'Sopen01g005480' => 'spe', 'Sopen01g042850' => 'spe', 'Sopen02g029370' => 'spe', 'Sopen03g028280' => 'spe', 'Sopen06g027870' => 'spe', 'Sopen10g032270' => 'spe', 'Sp5g18180' => 'spa', 'Sp6g12880' => 'spa', 'Sp6g30850' => 'spa', 'Sp7g22960' => 'spa', 'Sp7g34010' => 'spa', 'SpUn1326_0010' => 'spa', 'TAR371G0242' => 'tar', 'TAR622G0638' => 'tar', 'TAR628G1548' => 'tar', 'TAR629G1079' => 'tar', 'TAR629G3413' => 'tar', 'THA.LOC104804249' => 'tha', 'THA.LOC104808315' => 'tha', 'THA.LOC104809238' => 'tha', 'THA.LOC104825484' => 'tha', 'Thecc.01G025500' => 'tca', 'Thecc.03G015800' => 'tca', 'Thecc.03G018000' => 'tca', 'Thecc.03G134800' => 'tca', 'Thecc.04G014700' => 'tca', 'Thhalv10006991m.g' => 'esa', 'Thhalv10012707m.g' => 'esa', 'Thhalv10015739m.g' => 'esa', 'Thhalv10024553m.g' => 'esa', 'Thhalv10024673m.g' => 'esa', 'Thhalv10029187m.g' => 'esa', 'TPR.G12971' => 'tpr', 'TPR.G29396' => 'tpr', 'TPR.G33376' => 'tpr', 'TPR.G35508' => 'tpr', 'TPR.G35516' => 'tpr', 'TPR.G37317' => 'tpr', 'TPR.G37389' => 'tpr', 'TPR.G37523' => 'tpr', 'TPR.G559' => 'tpr', 'TWI14G0070' => 'twi', 'TWI14G0729' => 'twi', 'TWI18G0596' => 'twi', 'TWI39G0780' => 'twi', 'TWI39G0850' => 'twi', 'TWI73G1052' => 'twi', 'unitig_52.g17485' => 'ugi', 'unitig_61.g26355' => 'ugi', 'vmacro01040' => 'vma', 'vmacro16731' => 'vma', 'vmacro18270' => 'vma', 'vmacro19142' => 'vma', 'vmacro19407' => 'vma', 'vmacro19408' => 'vma', 'vmacro21899' => 'vma', 'vmacro21900' => 'vma', 'vmacro21901' => 'vma', 'VMungo0251G0490' => 'vmu', 'VMungo0251G1748' => 'vmu', 'VMungo1309G0421' => 'vmu', 'Zm00001eb086500' => 'zma', 'Zm00001eb150680' => 'zma', 'Zm00001eb162330' => 'zma', 'Zm00001eb203130' => 'zma', 'Zm00001eb369480' => 'zma', 'Zm00001eb382340' => 'zma', 'Zm00001eb416360' => 'zma' ), 'gf_id' => 'HOM05D000902', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000902' ), 'data_identifier' => 'HOM05D000902', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000902', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '663', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02470' => 'bna', 'A01p16260' => 'bna', 'A02p01680' => 'bna', 'A03p16600' => 'bna', 'A03p55660' => 'bna', 'A03p64160' => 'bna', 'A03p64170' => 'bna', 'A08p31900' => 'bna', 'A09p59530' => 'bna', 'A10p08230' => 'bna', 'A10p25090' => 'bna', 'Aa31LG3G7100' => 'aar', 'Aa31LG3G7110' => 'aar', 'Aa31LG6G13160' => 'aar', 'Aa31LG7G10770' => 'aar', 'Aa31LG7G3830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2723' => 'aag', 'Actinidia08045' => 'ach', 'Actinidia08888' => 'ach', 'Actinidia18333' => 'ach', 'Actinidia19334' => 'ach', 'Actinidia25552' => 'ach', 'Actinidia26089' => 'ach', 'Actinidia30615' => 'ach', 'Actinidia30616' => 'ach', 'Actinidia33083' => 'ach', 'Actinidia35762' => 'ach', 'Ah.02g110620' => 'amhyb', 'Ah.11g046390' => 'amhyb', 'AL1G31670' => 'aly', 'AL6G23730' => 'aly', 'AL7G14740' => 'aly', 'AL7G14750' => 'aly', 'AL7G14760' => 'aly', 'AL7G28220' => 'aly', 'AL8G24940' => 'aly', 'Aqoxy3G01665' => 'aox', 'Aqoxy3G02853' => 'aox', 'Aqoxy5G01513' => 'aox', 'Aqoxy5G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8SKA4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ75LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKDA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0LJZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7REX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZP4YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWX7I5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2QKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS0L9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPCD8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q161UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC7XCF' => 'arhy', 'AT1G19100' => 'ath', 'AT4G24970' => 'ath', 'AT4G36270' => 'ath', 'AT4G36280' => 'ath', 'AT4G36290' => 'ath', 'AT5G13130' => 'ath', 'AT5G50780' => 'ath', 'ATR0582G266' => 'atr', 'ATR0661G195' => 'atr', 'ATR1152G031' => 'atr', 'Atru.chr11.2382' => 'acertr', 'Atru.chr12.2337' => 'acertr', 'Atru.chr3.744' => 'acertr', 'Atru.chr6.1870' => 'acertr', 'Atru.chr9.2515' => 'acertr', 'AUR62004120' => 'cqu', 'AUR62005667' => 'cqu', 'AUR62007634' => 'cqu', 'AUR62008186' => 'cqu', 'AUR62008187' => 'cqu', 'AUR62008188' => 'cqu', 'AUR62027954' => 'cqu', 'AUR62028766' => 'cqu', 'AUR62028767' => 'cqu', 'AUR62028768' => 'cqu', 'AUR62028886' => 'cqu', 'AUR62029563' => 'cqu', 'AUR62038832' => 'cqu', 'BcaB01g04149' => 'bca', 'BcaB03g12940' => 'bca', 'BcaB03g13090' => 'bca', 'BcaB03g14466' => 'bca', 'BcaB05g24035' => 'bca', 'BcaC01g06050' => 'bca', 'BcaC04g19148' => 'bca', 'BcaC04g20761' => 'bca', 'BcaC06g32845' => 'bca', 'BcaC07g41274' => 'bca', 'BcaC09g50827' => 'bca', 'BcaNung00741' => 'bca', 'BcaNung00742' => 'bca', 'BcaNung01859' => 'bca', 'BcaNung03985' => 'bca', 'BcaNung03989' => 'bca', 'BcaNung05661' => 'bca', 'BolC1t00257H' => 'bol', 'BolC1t01956H' => 'bol', 'BolC2t06534H' => 'bol', 'BolC3t14334H' => 'bol', 'BolC5t30451H' => 'bol', 'BolC7t45880H' => 'bol', 'BolC7t46586H' => 'bol', 'BolC8t49301H' => 'bol', 'BolC8t51837H' => 'bol', 'BolC9t56822H' => 'bol', 'BolC9t59235H' => 'bol', 'BraA01t00234Z' => 'bra', 'BraA01t01563Z' => 'bra', 'BraA02t05147Z' => 'bra', 'BraA03t10947Z' => 'bra', 'BraA03t14633Z' => 'bra', 'BraA08t35112Z' => 'bra', 'BraA09t41330Z' => 'bra', 'BraA10t44570Z' => 'bra', 'C01p02670' => 'bna', 'C01p20260' => 'bna', 'C02p05890' => 'bna', 'C03p19530' => 'bna', 'C05p17470' => 'bna', 'C07p53900' => 'bna', 'C07p61630' => 'bna', 'C08p16800' => 'bna', 'C08p42810' => 'bna', 'C09p39480' => 'bna', 'C09p63980' => 'bna', 'CAN.G1001.7' => 'can', 'CAN.G1034.55' => 'can', 'CAN.G143.7' => 'can', 'CAN.G3340.1' => 'can', 'CAN.G358.19' => 'can', 'CAN.G373.2' => 'can', 'CAN.G674.16' => 'can', 'CAN.G674.17' => 'can', 'CAN.G674.18' => 'can', 'CAN.G732.2' => 'can', 'CAN.G732.3' => 'can', 'CAN.G993.39' => 'can', 'CANSAT01G2052' => 'cansat', 'CANSAT80G0070' => 'cansat', 'CANSAT80G0483' => 'cansat', 'CANSAT80G0625' => 'cansat', 'CARHR019690' => 'chi', 'CARHR080280' => 'chi', 'CARHR152750' => 'chi', 'CARHR152760' => 'chi', 'CARHR152770' => 'chi', 'CARHR200340' => 'chi', 'CARHR232370' => 'chi', 'CARHR244670' => 'chi', 'CARHR244680' => 'chi', 'CARHR257520' => 'chi', 'Carub.0001s1872' => 'cru', 'Carub.0006s1130' => 'cru', 'Carub.0007s0396' => 'cru', 'Carub.0007s0397' => 'cru', 'Carub.0007s1608' => 'cru', 'Carub.0008s1068' => 'cru', 'Carub.0008s1077' => 'cru', 'Ca_16158_v3' => 'car', 'Ca_17571_v3' => 'car', 'Ca_21936_v3' => 'car', 'Ca_22350_v3' => 'car', 'CBR_g22445' => 'cbr', 'CBR_g26290' => 'cbr', 'Cc04_g09610' => 'ccan', 'Cc04_g12280' => 'ccan', 'Cc07_g10230' => 'ccan', 'CDE02G0093' => 'cde', 'CDE02G0701' => 'cde', 'CDE04G1050' => 'cde', 'CDE05G1833' => 'cde', 'CDE05G3058' => 'cde', 'CDE05G3380' => 'cde', 'CDE06G0536' => 'cde', 'Cfa006923' => 'cfa', 'Cfa009402' => 'cfa', 'Cfa018751' => 'cfa', 'Cfa019164' => 'cfa', 'Cfa022935' => 'cfa', 'Ciclev10019081m.g' => 'ccl', 'Ciclev10025076m.g' => 'ccl', 'Ciclev10030712m.g' => 'ccl', 'Ciclev10033760m.g' => 'ccl', 'CiPaw.05G105600' => 'cil', 'CiPaw.08G136700' => 'cil', 'CiPaw.11G003900' => 'cil', 'CiPaw.11G023700' => 'cil', 'CiPaw.12G003700' => 'cil', 'ClCG06G017100' => 'cla', 'ClCG06G018110' => 'cla', 'ClCG07G008800' => 'cla', 'ClCG07G015330' => 'cla', 'COL.COLO4_13698' => 'col', 'COL.COLO4_16659' => 'col', 'COL.COLO4_21986' => 'col', 'COL.COLO4_24049' => 'col', 'COL.COLO4_29061' => 'col', 'COL.COLO4_29075' => 'col', 'COL.COLO4_30094' => 'col', 'Cpa.g.c33689' => 'cpa', 'Cpa.g.sc108.39' => 'cpa', 'Cpa.g.sc108.41' => 'cpa', 'Cpa.g.sc1163.1' => 'cpa', 'Cpa.g.sc4.155' => 'cpa', 'Cpa.g.sc6.194' => 'cpa', 'CsaV3_1G000340' => 'csa', 'CsaV3_1G001400' => 'csa', 'CsaV3_4G002220' => 'csa', 'CsaV3_4G005370' => 'csa', 'CSS0007487' => 'camsi', 'CSS0008066' => 'camsi', 'CSS0009120' => 'camsi', 'CSS0015512' => 'camsi', 'CSS0022409' => 'camsi', 'CSS0025358' => 'camsi', 'CSS0044547' => 'camsi', 'DCAR_013057' => 'dca', 'DCAR_015058' => 'dca', 'DCAR_016027' => 'dca', 'DCAR_017327' => 'dca', 'DCAR_020743' => 'dca', 'DCAR_026157' => 'dca', 'DCAR_032339' => 'dca', 'DCAR_032340' => 'dca', 'Dinv11200' => 'din', 'Dinv11201' => 'din', 'Dinv20631' => 'din', 'Dinv23182' => 'din', 'Dinv33466' => 'din', 'Dinv33583' => 'din', 'Dinv38565' => 'din', 'Duzib068G0200' => 'dzi', 'Duzib147G0132' => 'dzi', 'Duzib147G0635' => 'dzi', 'Duzib205G1670' => 'dzi', 'Duzib251G0606' => 'dzi', 'ECA232G3336' => 'eca', 'ECA232G3763' => 'eca', 'ECA232G4845' => 'eca', 'ECA234G1607' => 'eca', 'ECA246G0932' => 'eca', 'ECA247G0781' => 'eca', 'ECA247G1932' => 'eca', 'ECA247G2079' => 'eca', 'ECA247G3338' => 'eca', 'ECA247G4115' => 'eca', 'EL10Ac3g06552' => 'bvu', 'EL10Ac5g10721' => 'bvu', 'EL10Ac5g10722' => 'bvu', 'EL10Ac5g10723' => 'bvu', 'EL10Ac5g11361' => 'bvu', 'EL10Ac6g13553' => 'bvu', 'EL10As8g23872' => 'bvu', 'Eucgr.B00250' => 'egr', 'Eucgr.B00251' => 'egr', 'Eucgr.B03533' => 'egr', 'Eucgr.I02381' => 'egr', 'Eucgr.K02700' => 'egr', 'FAN02G0174' => 'fan', 'FAN02G3146' => 'fan', 'FAN04G1672' => 'fan', 'FAN04G2273' => 'fan', 'FAN05G2791' => 'fan', 'FAN05G4035' => 'fan', 'FAN07G0834' => 'fan', 'FAN08G1198' => 'fan', 'FAN09G4182' => 'fan', 'FAN12G0496' => 'fan', 'FAN13G1027' => 'fan', 'FAN13G2951' => 'fan', 'FAN14G0705' => 'fan', 'FAN14G0720' => 'fan', 'FAN17G0201' => 'fan', 'FAN17G2665' => 'fan', 'FAN18G1456' => 'fan', 'FAN18G1525' => 'fan', 'FAN18G3500' => 'fan', 'FAN28G2670' => 'fan', 'FvH4_1g12391' => 'fve', 'FvH4_4g23220' => 'fve', 'FvH4_5g08810' => 'fve', 'FvH4_5g28960' => 'fve', 'FvH4_6g42820' => 'fve', 'FvH4_6g51110' => 'fve', 'Glyma.02G051802' => 'gma', 'Glyma.04G185300' => 'gma', 'Glyma.05G202900' => 'gma', 'Glyma.08G010300' => 'gma', 'Glyma.16G131900' => 'gma', 'Glyma.17G087900' => 'gma', 'Gohir.A07G048600' => 'ghi', 'Gohir.A11G179000' => 'ghi', 'Gohir.A12G140900' => 'ghi', 'Gohir.A12G140950' => 'ghi', 'Gohir.A12G191700' => 'ghi', 'Gohir.A13G086300' => 'ghi', 'Gohir.D07G052900' => 'ghi', 'Gohir.D11G186600' => 'ghi', 'Gohir.D12G145575' => 'ghi', 'Gohir.D12G145650' => 'ghi', 'Gohir.D12G145725' => 'ghi', 'Gohir.D12G194050' => 'ghi', 'Gohir.D13G091800' => 'ghi', 'Gorai.001G055900' => 'gra', 'Gorai.007G198400' => 'gra', 'Gorai.008G157000' => 'gra', 'Gorai.008G157100' => 'gra', 'Gorai.008G208700' => 'gra', 'Gorai.010G138700' => 'gra', 'GSVIVG01000977001' => 'vvi', 'GSVIVG01007708001' => 'vvi', 'GSVIVG01008587001' => 'vvi', 'GSVIVG01018849001' => 'vvi', 'GSVIVG01032432001' => 'vvi', 'HanXRQChr02g0034131' => 'han', 'HanXRQChr02g0035981' => 'han', 'HanXRQChr02g0035991' => 'han', 'HanXRQChr05g0155611' => 'han', 'HanXRQChr05g0155621' => 'han', 'HanXRQChr08g0236501' => 'han', 'HanXRQChr09g0261321' => 'han', 'HanXRQChr09g0272081' => 'han', 'HanXRQChr10g0310741' => 'han', 'HanXRQChr11g0325591' => 'han', 'HanXRQChr12g0385691' => 'han', 'HanXRQChr13g0387801' => 'han', 'HanXRQChr15g0463011' => 'han', 'Haze_03826' => 'cav', 'Haze_03827' => 'cav', 'Haze_07183' => 'cav', 'Haze_07537' => 'cav', 'Haze_07539' => 'cav', 'Haze_12461' => 'cav', 'Haze_16115' => 'cav', 'Haze_16808' => 'cav', 'Haze_18531' => 'cav', 'Hma1.2p1_0046F.1_g026700' => 'hma', 'Hma1.2p1_0046F.1_g026710' => 'hma', 'Hma1.2p1_0168F.1_g074340' => 'hma', 'Hma1.2p1_0266F.1_g107030' => 'hma', 'Hma1.2p1_0266F.1_g107060' => 'hma', 'Hma1.2p1_0275F.1_g110510' => 'hma', 'Hma1.2p1_0592F.1_g185490' => 'hma', 'Hma1.2p1_0592F.1_g185500' => 'hma', 'Hma1.2p1_0592F.1_g185510' => 'hma', 'Hma1.2p1_0592F.1_g185520' => 'hma', 'Hma1.2p1_0592F.1_g185530' => 'hma', 'Hma1.2p1_0818F.1_g223450' => 'hma', 'HPP92_009708' => 'vpl', 'HPP92_009793' => 'vpl', 'HPP92_009796' => 'vpl', 'HPP92_009797' => 'vpl', 'HPP92_014940' => 'vpl', 'HPP92_014988' => 'vpl', 'Hund02463' => 'sun', 'Hund02760' => 'sun', 'Hund05071' => 'sun', 'Hund10108' => 'sun', 'Hund11204' => 'sun', 'Hund14016' => 'sun', 'Hund16464' => 'sun', 'Lalb_Chr09g0333391' => 'lal', 'Lalb_Chr11g0070461' => 'lal', 'Lalb_Chr12g0201671' => 'lal', 'Lalb_Chr13g0297161' => 'lal', 'Lj1g0002823' => 'lja', 'Lj3C1074T6' => 'lonja', 'Lj4A212T28' => 'lonja', 'Lj4g0005516' => 'lja', 'Lj4g0013705' => 'lja', 'Lj4g0027865' => 'lja', 'Lj5C92G16' => 'lonja', 'Lj5C92T12' => 'lonja', 'Lj7C596T3' => 'lonja', 'Lj9A446G59' => 'lonja', 'Lj9A482G21' => 'lonja', 'Lsat_1_v5_gn_1_28261' => 'lsa', 'Lsat_1_v5_gn_1_28281' => 'lsa', 'Lsat_1_v5_gn_1_32721' => 'lsa', 'Lsat_1_v5_gn_4_151760' => 'lsa', 'Lsat_1_v5_gn_4_2120' => 'lsa', 'Lsat_1_v5_gn_4_75761' => 'lsa', 'Lsat_1_v5_gn_5_10920' => 'lsa', 'Manes.02G099900' => 'mes', 'Manes.11G096200' => 'mes', 'Manes.12G007200' => 'mes', 'Manes.14G048300' => 'mes', 'Manes.17G114700' => 'mes', 'Mapoly0002s0070' => 'mpo', 'Mapoly0029s0099' => 'mpo', 'MBI07_g24742_MAGBIO' => 'mbi', 'MBI10_g27988_MAGBIO' => 'mbi', 'MBI11_g13057_MAGBIO' => 'mbi', 'MD02G1137200' => 'mdo', 'MD06G1137200' => 'mdo', 'MD07G1122300' => 'mdo', 'MD09G1078200' => 'mdo', 'MD13G1123700' => 'mdo', 'MD14G1151900' => 'mdo', 'MD17G1030900' => 'mdo', 'MD17G1068200' => 'mdo', 'MD17G1068600' => 'mdo', 'Medtr3g077540' => 'mtr', 'Medtr4g105530' => 'mtr', 'Medtr8g076580' => 'mtr', 'Medtr8g076590' => 'mtr', 'Medtr8g096410' => 'mtr', 'MELO3C016411.2' => 'cme', 'MELO3C017780.2' => 'cme', 'MELO3C022560.2' => 'cme', 'MELO3C026187.2' => 'cme', 'MELO3C026286.2' => 'cme', 'MELO3C032854.2' => 'cme', 'Migut.H02495' => 'egut', 'Migut.I00561' => 'egut', 'Migut.K01015' => 'egut', 'Migut.K01016' => 'egut', 'Migut.L00743' => 'egut', 'Migut.L00744' => 'egut', 'Migut.L00746' => 'egut', 'Migut.L00798' => 'egut', 'Migut.L00799' => 'egut', 'Migut.N02096' => 'egut', 'MSTRG.11259' => 'ama', 'MSTRG.23142' => 'ama', 'MSTRG.2499' => 'ama', 'Nitab4.5_0000003g0730' => 'nta', 'Nitab4.5_0000137g0020' => 'nta', 'Nitab4.5_0000721g0210' => 'nta', 'Nitab4.5_0000723g0050' => 'nta', 'Nitab4.5_0000913g0070' => 'nta', 'Nitab4.5_0001332g0040' => 'nta', 'Nitab4.5_0001771g0050' => 'nta', 'Nitab4.5_0001918g0050' => 'nta', 'Nitab4.5_0002686g0030' => 'nta', 'Nitab4.5_0003156g0020' => 'nta', 'Nitab4.5_0003383g0040' => 'nta', 'Nitab4.5_0003918g0010' => 'nta', 'Nitab4.5_0006760g0010' => 'nta', 'Nn1g05981' => 'nnu', 'Nn1g06288' => 'nnu', 'Nn3g16371' => 'nnu', 'Nn3g16786' => 'nnu', 'Nn4g22232' => 'nnu', 'Oeu005144.1' => 'oeu', 'Oeu005145.1' => 'oeu', 'Oeu011348.1' => 'oeu', 'Oeu016415.1' => 'oeu', 'Oeu023501.1' => 'oeu', 'Oeu044473.1' => 'oeu', 'Oeu048892.2' => 'oeu', 'Os01g0549200' => 'osa', 'Os02g0469300' => 'osa', 'Os04g0311100' => 'osa', 'Os06g0474900' => 'osa', 'Os10g0181700' => 'osa', 'Os11g0454800' => 'osa', 'Peaxi162Scf00037g00714' => 'pax', 'Peaxi162Scf00084g01217' => 'pax', 'Peaxi162Scf00257g00217' => 'pax', 'Peaxi162Scf00516g00215' => 'pax', 'Peaxi162Scf00689g00123' => 'pax', 'PGR044G2719' => 'pgr', 'PGR083G1360' => 'pgr', 'PGR102G2849' => 'pgr', 'PGR119G2534' => 'pgr', 'PGSC0003DMG400003538' => 'stu', 'PGSC0003DMG400028138' => 'stu', 'PGSC0003DMG400031732' => 'stu', 'PGSC0003DMG400038165' => 'stu', 'Phvul.002G284600' => 'pvu', 'Phvul.003G258200' => 'pvu', 'Phvul.009G176500' => 'pvu', 'Potri.003G167201' => 'ptr', 'Potri.005G118400' => 'ptr', 'Potri.012G089000' => 'ptr', 'Potri.012G102800' => 'ptr', 'Potri.015G079400' => 'ptr', 'Potri.015G100900' => 'ptr', 'Pp3c14_9810' => 'ppa', 'Pp3c15_10450' => 'ppa', 'Pp3c20_19150' => 'ppa', 'Pp3c23_12740' => 'ppa', 'Pp3c23_6310' => 'ppa', 'Pp3c24_3720' => 'ppa', 'Pp3c27_2580' => 'ppa', 'Pp3c9_8990' => 'ppa', 'PRCOL_00002854' => 'pco', 'Prupe.1G221200' => 'ppe', 'Prupe.3G289000' => 'ppe', 'Prupe.5G147000' => 'ppe', 'Prupe.6G157300' => 'ppe', 'Prupe.7G163400' => 'ppe', 'Psat0s2177g0040' => 'psa', 'Psat3g174760' => 'psa', 'Psat3g192160' => 'psa', 'Psat4g058520' => 'psa', 'Psat4g096840' => 'psa', 'Psat7g037320' => 'psa', 'PSO017G1274' => 'pso', 'PSO017G5166' => 'pso', 'PSO063G4558' => 'pso', 'PSO170G4458' => 'pso', 'PSO170G5005' => 'pso', 'PSO210G6156' => 'pso', 'PSO210G6635' => 'pso', 'PSO210G7397' => 'pso', 'PSO210G7700' => 'pso', 'PSO455G0035' => 'pso', 'PSO455G0180' => 'pso', 'PSO478G4515' => 'pso', 'PSO832G1305' => 'pso', 'PSO832G3489' => 'pso', 'QL02p075247' => 'qlo', 'QL03p051148' => 'qlo', 'QL05p010313' => 'qlo', 'QL06p034627' => 'qlo', 'QL10p001889' => 'qlo', 'QL10p010846' => 'qlo', 'RcHm_v2.0_Chr1g0350621' => 'rch', 'RcHm_v2.0_Chr1g0350641' => 'rch', 'RcHm_v2.0_Chr2g0092891' => 'rch', 'RcHm_v2.0_Chr2g0100251' => 'rch', 'RcHm_v2.0_Chr2g0158661' => 'rch', 'RcHm_v2.0_Chr2g0172741' => 'rch', 'RcHm_v2.0_Chr4g0429571' => 'rch', 'RcHm_v2.0_Chr5g0042471' => 'rch', 'RcHm_v2.0_Chr7g0189451' => 'rch', 'Rhsim08G0052000' => 'rsi', 'Rhsim08G0174400' => 'rsi', 'Rhsim08G0193200' => 'rsi', 'Rhsim10G0214800' => 'rsi', 'Rhsim10G0214900' => 'rsi', 'Rhsim10G0215000' => 'rsi', 'Rhsim12G0022900' => 'rsi', 'Rhsim12G0177500' => 'rsi', 'Rhsim12G0177700' => 'rsi', 'Sabra03G0122600' => 'sbr', 'Sabra05G0097400' => 'sbr', 'Sabra12G0064100' => 'sbr', 'Sabra15G0121300' => 'sbr', 'SalBow2G0642' => 'sbo', 'SalBow5G2667' => 'sbo', 'SalBow5G4873' => 'sbo', 'SalBow8G2395' => 'sbo', 'Sc03g0003290' => 'sci', 'Sc10g0010130' => 'sci', 'Sc22g0003650' => 'sci', 'Sed0001603' => 'sed', 'Sed0004259' => 'sed', 'Sed0006789' => 'sed', 'Sed0011838' => 'sed', 'Sed0012964' => 'sed', 'Sed0016383' => 'sed', 'Sed0019010' => 'sed', 'Sed0020188' => 'sed', 'SEGI_04702' => 'sgi', 'SEGI_17231' => 'sgi', 'SEGI_18877' => 'sgi', 'SEGI_25196' => 'sgi', 'SEGI_25515' => 'sgi', 'SEGI_28445' => 'sgi', 'SEGI_37452' => 'sgi', 'SGA_v2.0_scaffold188G40336' => 'sas', 'SGA_v2.0_scaffold228G43247' => 'sas', 'SGA_v2.0_scaffold280G46853' => 'sas', 'SGA_v2.0_scaffold34G13808' => 'sas', 'SGA_v2.0_scaffold40G15576' => 'sas', 'SGA_v2.0_scaffold611G53188' => 'sas', 'SGA_v2.0_scaffold78G25461' => 'sas', 'SGA_v2.0_scaffold90G27888' => 'sas', 'SHI08601' => 'shi', 'SHI08606' => 'shi', 'SHI17117' => 'shi', 'SHI17119' => 'shi', 'SMO118G0201' => 'smo', 'SMO169G0247' => 'smo', 'SMO176G0006' => 'smo', 'SMO176G0015' => 'smo', 'SMO202G0006' => 'smo', 'SMO240G0050' => 'smo', 'SMO286G0009' => 'smo', 'SMO338G0033' => 'smo', 'SMO356G0533' => 'smo', 'SMO364G0382' => 'smo', 'SMO367G0166' => 'smo', 'SMO367G1098' => 'smo', 'Solyc01g009920.3' => 'sly', 'Solyc01g099300.3' => 'sly', 'Solyc02g084700.3' => 'sly', 'Solyc03g097520.3' => 'sly', 'Solyc06g071580.3' => 'sly', 'Solyc10g081760.3' => 'sly', 'Sopen01g005480' => 'spe', 'Sopen01g042850' => 'spe', 'Sopen02g029370' => 'spe', 'Sopen03g028280' => 'spe', 'Sopen06g027870' => 'spe', 'Sopen10g032270' => 'spe', 'Sp5g18180' => 'spa', 'Sp6g12880' => 'spa', 'Sp6g30850' => 'spa', 'Sp7g22960' => 'spa', 'Sp7g34010' => 'spa', 'SpUn1326_0010' => 'spa', 'TAR371G0242' => 'tar', 'TAR622G0638' => 'tar', 'TAR628G1548' => 'tar', 'TAR629G1079' => 'tar', 'TAR629G3413' => 'tar', 'THA.LOC104804249' => 'tha', 'THA.LOC104808315' => 'tha', 'THA.LOC104809238' => 'tha', 'THA.LOC104825484' => 'tha', 'Thecc.01G025500' => 'tca', 'Thecc.03G015800' => 'tca', 'Thecc.03G018000' => 'tca', 'Thecc.03G134800' => 'tca', 'Thecc.04G014700' => 'tca', 'Thhalv10006991m.g' => 'esa', 'Thhalv10012707m.g' => 'esa', 'Thhalv10015739m.g' => 'esa', 'Thhalv10024553m.g' => 'esa', 'Thhalv10024673m.g' => 'esa', 'Thhalv10029187m.g' => 'esa', 'TPR.G12971' => 'tpr', 'TPR.G29396' => 'tpr', 'TPR.G33376' => 'tpr', 'TPR.G35508' => 'tpr', 'TPR.G35516' => 'tpr', 'TPR.G37317' => 'tpr', 'TPR.G37389' => 'tpr', 'TPR.G37523' => 'tpr', 'TPR.G559' => 'tpr', 'TWI14G0070' => 'twi', 'TWI14G0729' => 'twi', 'TWI18G0596' => 'twi', 'TWI39G0780' => 'twi', 'TWI39G0850' => 'twi', 'TWI73G1052' => 'twi', 'unitig_52.g17485' => 'ugi', 'unitig_61.g26355' => 'ugi', 'vmacro01040' => 'vma', 'vmacro16731' => 'vma', 'vmacro18270' => 'vma', 'vmacro19142' => 'vma', 'vmacro19407' => 'vma', 'vmacro19408' => 'vma', 'vmacro21899' => 'vma', 'vmacro21900' => 'vma', 'vmacro21901' => 'vma', 'VMungo0251G0490' => 'vmu', 'VMungo0251G1748' => 'vmu', 'VMungo1309G0421' => 'vmu', 'Zm00001eb086500' => 'zma', 'Zm00001eb150680' => 'zma', 'Zm00001eb162330' => 'zma', 'Zm00001eb203130' => 'zma', 'Zm00001eb369480' => 'zma', 'Zm00001eb382340' => 'zma', 'Zm00001eb416360' => 'zma' ) $gf_id = 'HOM05D000902' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000902' ) $data_identifier = 'HOM05D000902' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 13, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 10, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 6, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 9, 'hma' => (int) 12, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 4, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 6, 'ppa' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 6, 'rch' => (int) 9, 'rsi' => (int) 9, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 12, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 3, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416360' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000902', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '663', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02470' => 'bna', 'A01p16260' => 'bna', 'A02p01680' => 'bna', 'A03p16600' => 'bna', 'A03p55660' => 'bna', 'A03p64160' => 'bna', 'A03p64170' => 'bna', 'A08p31900' => 'bna', 'A09p59530' => 'bna', 'A10p08230' => 'bna', 'A10p25090' => 'bna', 'Aa31LG3G7100' => 'aar', 'Aa31LG3G7110' => 'aar', 'Aa31LG6G13160' => 'aar', 'Aa31LG7G10770' => 'aar', 'Aa31LG7G3830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2723' => 'aag', 'Actinidia08045' => 'ach', 'Actinidia08888' => 'ach', 'Actinidia18333' => 'ach', 'Actinidia19334' => 'ach', 'Actinidia25552' => 'ach', 'Actinidia26089' => 'ach', 'Actinidia30615' => 'ach', 'Actinidia30616' => 'ach', 'Actinidia33083' => 'ach', 'Actinidia35762' => 'ach', 'Ah.02g110620' => 'amhyb', 'Ah.11g046390' => 'amhyb', 'AL1G31670' => 'aly', 'AL6G23730' => 'aly', 'AL7G14740' => 'aly', 'AL7G14750' => 'aly', 'AL7G14760' => 'aly', 'AL7G28220' => 'aly', 'AL8G24940' => 'aly', 'Aqoxy3G01665' => 'aox', 'Aqoxy3G02853' => 'aox', 'Aqoxy5G01513' => 'aox', 'Aqoxy5G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8SKA4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ75LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKDA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0LJZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7REX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZP4YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWX7I5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2QKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS0L9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPCD8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q161UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC7XCF' => 'arhy', 'AT1G19100' => 'ath', 'AT4G24970' => 'ath', 'AT4G36270' => 'ath', 'AT4G36280' => 'ath', 'AT4G36290' => 'ath', 'AT5G13130' => 'ath', 'AT5G50780' => 'ath', 'ATR0582G266' => 'atr', 'ATR0661G195' => 'atr', 'ATR1152G031' => 'atr', 'Atru.chr11.2382' => 'acertr', 'Atru.chr12.2337' => 'acertr', 'Atru.chr3.744' => 'acertr', 'Atru.chr6.1870' => 'acertr', 'Atru.chr9.2515' => 'acertr', 'AUR62004120' => 'cqu', 'AUR62005667' => 'cqu', 'AUR62007634' => 'cqu', 'AUR62008186' => 'cqu', 'AUR62008187' => 'cqu', 'AUR62008188' => 'cqu', 'AUR62027954' => 'cqu', 'AUR62028766' => 'cqu', 'AUR62028767' => 'cqu', 'AUR62028768' => 'cqu', 'AUR62028886' => 'cqu', 'AUR62029563' => 'cqu', 'AUR62038832' => 'cqu', 'BcaB01g04149' => 'bca', 'BcaB03g12940' => 'bca', 'BcaB03g13090' => 'bca', 'BcaB03g14466' => 'bca', 'BcaB05g24035' => 'bca', 'BcaC01g06050' => 'bca', 'BcaC04g19148' => 'bca', 'BcaC04g20761' => 'bca', 'BcaC06g32845' => 'bca', 'BcaC07g41274' => 'bca', 'BcaC09g50827' => 'bca', 'BcaNung00741' => 'bca', 'BcaNung00742' => 'bca', 'BcaNung01859' => 'bca', 'BcaNung03985' => 'bca', 'BcaNung03989' => 'bca', 'BcaNung05661' => 'bca', 'BolC1t00257H' => 'bol', 'BolC1t01956H' => 'bol', 'BolC2t06534H' => 'bol', 'BolC3t14334H' => 'bol', 'BolC5t30451H' => 'bol', 'BolC7t45880H' => 'bol', 'BolC7t46586H' => 'bol', 'BolC8t49301H' => 'bol', 'BolC8t51837H' => 'bol', 'BolC9t56822H' => 'bol', 'BolC9t59235H' => 'bol', 'BraA01t00234Z' => 'bra', 'BraA01t01563Z' => 'bra', 'BraA02t05147Z' => 'bra', 'BraA03t10947Z' => 'bra', 'BraA03t14633Z' => 'bra', 'BraA08t35112Z' => 'bra', 'BraA09t41330Z' => 'bra', 'BraA10t44570Z' => 'bra', 'C01p02670' => 'bna', 'C01p20260' => 'bna', 'C02p05890' => 'bna', 'C03p19530' => 'bna', 'C05p17470' => 'bna', 'C07p53900' => 'bna', 'C07p61630' => 'bna', 'C08p16800' => 'bna', 'C08p42810' => 'bna', 'C09p39480' => 'bna', 'C09p63980' => 'bna', 'CAN.G1001.7' => 'can', 'CAN.G1034.55' => 'can', 'CAN.G143.7' => 'can', 'CAN.G3340.1' => 'can', 'CAN.G358.19' => 'can', 'CAN.G373.2' => 'can', 'CAN.G674.16' => 'can', 'CAN.G674.17' => 'can', 'CAN.G674.18' => 'can', 'CAN.G732.2' => 'can', 'CAN.G732.3' => 'can', 'CAN.G993.39' => 'can', 'CANSAT01G2052' => 'cansat', 'CANSAT80G0070' => 'cansat', 'CANSAT80G0483' => 'cansat', 'CANSAT80G0625' => 'cansat', 'CARHR019690' => 'chi', 'CARHR080280' => 'chi', 'CARHR152750' => 'chi', 'CARHR152760' => 'chi', 'CARHR152770' => 'chi', 'CARHR200340' => 'chi', 'CARHR232370' => 'chi', 'CARHR244670' => 'chi', 'CARHR244680' => 'chi', 'CARHR257520' => 'chi', 'Carub.0001s1872' => 'cru', 'Carub.0006s1130' => 'cru', 'Carub.0007s0396' => 'cru', 'Carub.0007s0397' => 'cru', 'Carub.0007s1608' => 'cru', 'Carub.0008s1068' => 'cru', 'Carub.0008s1077' => 'cru', 'Ca_16158_v3' => 'car', 'Ca_17571_v3' => 'car', 'Ca_21936_v3' => 'car', 'Ca_22350_v3' => 'car', 'CBR_g22445' => 'cbr', 'CBR_g26290' => 'cbr', 'Cc04_g09610' => 'ccan', 'Cc04_g12280' => 'ccan', 'Cc07_g10230' => 'ccan', 'CDE02G0093' => 'cde', 'CDE02G0701' => 'cde', 'CDE04G1050' => 'cde', 'CDE05G1833' => 'cde', 'CDE05G3058' => 'cde', 'CDE05G3380' => 'cde', 'CDE06G0536' => 'cde', 'Cfa006923' => 'cfa', 'Cfa009402' => 'cfa', 'Cfa018751' => 'cfa', 'Cfa019164' => 'cfa', 'Cfa022935' => 'cfa', 'Ciclev10019081m.g' => 'ccl', 'Ciclev10025076m.g' => 'ccl', 'Ciclev10030712m.g' => 'ccl', 'Ciclev10033760m.g' => 'ccl', 'CiPaw.05G105600' => 'cil', 'CiPaw.08G136700' => 'cil', 'CiPaw.11G003900' => 'cil', 'CiPaw.11G023700' => 'cil', 'CiPaw.12G003700' => 'cil', 'ClCG06G017100' => 'cla', 'ClCG06G018110' => 'cla', 'ClCG07G008800' => 'cla', 'ClCG07G015330' => 'cla', 'COL.COLO4_13698' => 'col', 'COL.COLO4_16659' => 'col', 'COL.COLO4_21986' => 'col', 'COL.COLO4_24049' => 'col', 'COL.COLO4_29061' => 'col', 'COL.COLO4_29075' => 'col', 'COL.COLO4_30094' => 'col', 'Cpa.g.c33689' => 'cpa', 'Cpa.g.sc108.39' => 'cpa', 'Cpa.g.sc108.41' => 'cpa', 'Cpa.g.sc1163.1' => 'cpa', 'Cpa.g.sc4.155' => 'cpa', 'Cpa.g.sc6.194' => 'cpa', 'CsaV3_1G000340' => 'csa', 'CsaV3_1G001400' => 'csa', 'CsaV3_4G002220' => 'csa', 'CsaV3_4G005370' => 'csa', 'CSS0007487' => 'camsi', 'CSS0008066' => 'camsi', 'CSS0009120' => 'camsi', 'CSS0015512' => 'camsi', 'CSS0022409' => 'camsi', 'CSS0025358' => 'camsi', 'CSS0044547' => 'camsi', 'DCAR_013057' => 'dca', 'DCAR_015058' => 'dca', 'DCAR_016027' => 'dca', 'DCAR_017327' => 'dca', 'DCAR_020743' => 'dca', 'DCAR_026157' => 'dca', 'DCAR_032339' => 'dca', 'DCAR_032340' => 'dca', 'Dinv11200' => 'din', 'Dinv11201' => 'din', 'Dinv20631' => 'din', 'Dinv23182' => 'din', 'Dinv33466' => 'din', 'Dinv33583' => 'din', 'Dinv38565' => 'din', 'Duzib068G0200' => 'dzi', 'Duzib147G0132' => 'dzi', 'Duzib147G0635' => 'dzi', 'Duzib205G1670' => 'dzi', 'Duzib251G0606' => 'dzi', 'ECA232G3336' => 'eca', 'ECA232G3763' => 'eca', 'ECA232G4845' => 'eca', 'ECA234G1607' => 'eca', 'ECA246G0932' => 'eca', 'ECA247G0781' => 'eca', 'ECA247G1932' => 'eca', 'ECA247G2079' => 'eca', 'ECA247G3338' => 'eca', 'ECA247G4115' => 'eca', 'EL10Ac3g06552' => 'bvu', 'EL10Ac5g10721' => 'bvu', 'EL10Ac5g10722' => 'bvu', 'EL10Ac5g10723' => 'bvu', 'EL10Ac5g11361' => 'bvu', 'EL10Ac6g13553' => 'bvu', 'EL10As8g23872' => 'bvu', 'Eucgr.B00250' => 'egr', 'Eucgr.B00251' => 'egr', 'Eucgr.B03533' => 'egr', 'Eucgr.I02381' => 'egr', 'Eucgr.K02700' => 'egr', 'FAN02G0174' => 'fan', 'FAN02G3146' => 'fan', 'FAN04G1672' => 'fan', 'FAN04G2273' => 'fan', 'FAN05G2791' => 'fan', 'FAN05G4035' => 'fan', 'FAN07G0834' => 'fan', 'FAN08G1198' => 'fan', 'FAN09G4182' => 'fan', 'FAN12G0496' => 'fan', 'FAN13G1027' => 'fan', 'FAN13G2951' => 'fan', 'FAN14G0705' => 'fan', 'FAN14G0720' => 'fan', 'FAN17G0201' => 'fan', 'FAN17G2665' => 'fan', 'FAN18G1456' => 'fan', 'FAN18G1525' => 'fan', 'FAN18G3500' => 'fan', 'FAN28G2670' => 'fan', 'FvH4_1g12391' => 'fve', 'FvH4_4g23220' => 'fve', 'FvH4_5g08810' => 'fve', 'FvH4_5g28960' => 'fve', 'FvH4_6g42820' => 'fve', 'FvH4_6g51110' => 'fve', 'Glyma.02G051802' => 'gma', 'Glyma.04G185300' => 'gma', 'Glyma.05G202900' => 'gma', 'Glyma.08G010300' => 'gma', 'Glyma.16G131900' => 'gma', 'Glyma.17G087900' => 'gma', 'Gohir.A07G048600' => 'ghi', 'Gohir.A11G179000' => 'ghi', 'Gohir.A12G140900' => 'ghi', 'Gohir.A12G140950' => 'ghi', 'Gohir.A12G191700' => 'ghi', 'Gohir.A13G086300' => 'ghi', 'Gohir.D07G052900' => 'ghi', 'Gohir.D11G186600' => 'ghi', 'Gohir.D12G145575' => 'ghi', 'Gohir.D12G145650' => 'ghi', 'Gohir.D12G145725' => 'ghi', 'Gohir.D12G194050' => 'ghi', 'Gohir.D13G091800' => 'ghi', 'Gorai.001G055900' => 'gra', 'Gorai.007G198400' => 'gra', 'Gorai.008G157000' => 'gra', 'Gorai.008G157100' => 'gra', 'Gorai.008G208700' => 'gra', 'Gorai.010G138700' => 'gra', 'GSVIVG01000977001' => 'vvi', 'GSVIVG01007708001' => 'vvi', 'GSVIVG01008587001' => 'vvi', 'GSVIVG01018849001' => 'vvi', 'GSVIVG01032432001' => 'vvi', 'HanXRQChr02g0034131' => 'han', 'HanXRQChr02g0035981' => 'han', 'HanXRQChr02g0035991' => 'han', 'HanXRQChr05g0155611' => 'han', 'HanXRQChr05g0155621' => 'han', 'HanXRQChr08g0236501' => 'han', 'HanXRQChr09g0261321' => 'han', 'HanXRQChr09g0272081' => 'han', 'HanXRQChr10g0310741' => 'han', 'HanXRQChr11g0325591' => 'han', 'HanXRQChr12g0385691' => 'han', 'HanXRQChr13g0387801' => 'han', 'HanXRQChr15g0463011' => 'han', 'Haze_03826' => 'cav', 'Haze_03827' => 'cav', 'Haze_07183' => 'cav', 'Haze_07537' => 'cav', 'Haze_07539' => 'cav', 'Haze_12461' => 'cav', 'Haze_16115' => 'cav', 'Haze_16808' => 'cav', 'Haze_18531' => 'cav', 'Hma1.2p1_0046F.1_g026700' => 'hma', 'Hma1.2p1_0046F.1_g026710' => 'hma', 'Hma1.2p1_0168F.1_g074340' => 'hma', 'Hma1.2p1_0266F.1_g107030' => 'hma', 'Hma1.2p1_0266F.1_g107060' => 'hma', 'Hma1.2p1_0275F.1_g110510' => 'hma', 'Hma1.2p1_0592F.1_g185490' => 'hma', 'Hma1.2p1_0592F.1_g185500' => 'hma', 'Hma1.2p1_0592F.1_g185510' => 'hma', 'Hma1.2p1_0592F.1_g185520' => 'hma', 'Hma1.2p1_0592F.1_g185530' => 'hma', 'Hma1.2p1_0818F.1_g223450' => 'hma', 'HPP92_009708' => 'vpl', 'HPP92_009793' => 'vpl', 'HPP92_009796' => 'vpl', 'HPP92_009797' => 'vpl', 'HPP92_014940' => 'vpl', 'HPP92_014988' => 'vpl', 'Hund02463' => 'sun', 'Hund02760' => 'sun', 'Hund05071' => 'sun', 'Hund10108' => 'sun', 'Hund11204' => 'sun', 'Hund14016' => 'sun', 'Hund16464' => 'sun', 'Lalb_Chr09g0333391' => 'lal', 'Lalb_Chr11g0070461' => 'lal', 'Lalb_Chr12g0201671' => 'lal', 'Lalb_Chr13g0297161' => 'lal', 'Lj1g0002823' => 'lja', 'Lj3C1074T6' => 'lonja', 'Lj4A212T28' => 'lonja', 'Lj4g0005516' => 'lja', 'Lj4g0013705' => 'lja', 'Lj4g0027865' => 'lja', 'Lj5C92G16' => 'lonja', 'Lj5C92T12' => 'lonja', 'Lj7C596T3' => 'lonja', 'Lj9A446G59' => 'lonja', 'Lj9A482G21' => 'lonja', 'Lsat_1_v5_gn_1_28261' => 'lsa', 'Lsat_1_v5_gn_1_28281' => 'lsa', 'Lsat_1_v5_gn_1_32721' => 'lsa', 'Lsat_1_v5_gn_4_151760' => 'lsa', 'Lsat_1_v5_gn_4_2120' => 'lsa', 'Lsat_1_v5_gn_4_75761' => 'lsa', 'Lsat_1_v5_gn_5_10920' => 'lsa', 'Manes.02G099900' => 'mes', 'Manes.11G096200' => 'mes', 'Manes.12G007200' => 'mes', 'Manes.14G048300' => 'mes', 'Manes.17G114700' => 'mes', 'Mapoly0002s0070' => 'mpo', 'Mapoly0029s0099' => 'mpo', 'MBI07_g24742_MAGBIO' => 'mbi', 'MBI10_g27988_MAGBIO' => 'mbi', 'MBI11_g13057_MAGBIO' => 'mbi', 'MD02G1137200' => 'mdo', 'MD06G1137200' => 'mdo', 'MD07G1122300' => 'mdo', 'MD09G1078200' => 'mdo', 'MD13G1123700' => 'mdo', 'MD14G1151900' => 'mdo', 'MD17G1030900' => 'mdo', 'MD17G1068200' => 'mdo', 'MD17G1068600' => 'mdo', 'Medtr3g077540' => 'mtr', 'Medtr4g105530' => 'mtr', 'Medtr8g076580' => 'mtr', 'Medtr8g076590' => 'mtr', 'Medtr8g096410' => 'mtr', 'MELO3C016411.2' => 'cme', 'MELO3C017780.2' => 'cme', 'MELO3C022560.2' => 'cme', 'MELO3C026187.2' => 'cme', 'MELO3C026286.2' => 'cme', 'MELO3C032854.2' => 'cme', 'Migut.H02495' => 'egut', 'Migut.I00561' => 'egut', 'Migut.K01015' => 'egut', 'Migut.K01016' => 'egut', 'Migut.L00743' => 'egut', 'Migut.L00744' => 'egut', 'Migut.L00746' => 'egut', 'Migut.L00798' => 'egut', 'Migut.L00799' => 'egut', 'Migut.N02096' => 'egut', 'MSTRG.11259' => 'ama', 'MSTRG.23142' => 'ama', 'MSTRG.2499' => 'ama', 'Nitab4.5_0000003g0730' => 'nta', 'Nitab4.5_0000137g0020' => 'nta', 'Nitab4.5_0000721g0210' => 'nta', 'Nitab4.5_0000723g0050' => 'nta', 'Nitab4.5_0000913g0070' => 'nta', 'Nitab4.5_0001332g0040' => 'nta', 'Nitab4.5_0001771g0050' => 'nta', 'Nitab4.5_0001918g0050' => 'nta', 'Nitab4.5_0002686g0030' => 'nta', 'Nitab4.5_0003156g0020' => 'nta', 'Nitab4.5_0003383g0040' => 'nta', 'Nitab4.5_0003918g0010' => 'nta', 'Nitab4.5_0006760g0010' => 'nta', 'Nn1g05981' => 'nnu', 'Nn1g06288' => 'nnu', 'Nn3g16371' => 'nnu', 'Nn3g16786' => 'nnu', 'Nn4g22232' => 'nnu', 'Oeu005144.1' => 'oeu', 'Oeu005145.1' => 'oeu', 'Oeu011348.1' => 'oeu', 'Oeu016415.1' => 'oeu', 'Oeu023501.1' => 'oeu', 'Oeu044473.1' => 'oeu', 'Oeu048892.2' => 'oeu', 'Os01g0549200' => 'osa', 'Os02g0469300' => 'osa', 'Os04g0311100' => 'osa', 'Os06g0474900' => 'osa', 'Os10g0181700' => 'osa', 'Os11g0454800' => 'osa', 'Peaxi162Scf00037g00714' => 'pax', 'Peaxi162Scf00084g01217' => 'pax', 'Peaxi162Scf00257g00217' => 'pax', 'Peaxi162Scf00516g00215' => 'pax', 'Peaxi162Scf00689g00123' => 'pax', 'PGR044G2719' => 'pgr', 'PGR083G1360' => 'pgr', 'PGR102G2849' => 'pgr', 'PGR119G2534' => 'pgr', 'PGSC0003DMG400003538' => 'stu', 'PGSC0003DMG400028138' => 'stu', 'PGSC0003DMG400031732' => 'stu', 'PGSC0003DMG400038165' => 'stu', 'Phvul.002G284600' => 'pvu', 'Phvul.003G258200' => 'pvu', 'Phvul.009G176500' => 'pvu', 'Potri.003G167201' => 'ptr', 'Potri.005G118400' => 'ptr', 'Potri.012G089000' => 'ptr', 'Potri.012G102800' => 'ptr', 'Potri.015G079400' => 'ptr', 'Potri.015G100900' => 'ptr', 'Pp3c14_9810' => 'ppa', 'Pp3c15_10450' => 'ppa', 'Pp3c20_19150' => 'ppa', 'Pp3c23_12740' => 'ppa', 'Pp3c23_6310' => 'ppa', 'Pp3c24_3720' => 'ppa', 'Pp3c27_2580' => 'ppa', 'Pp3c9_8990' => 'ppa', 'PRCOL_00002854' => 'pco', 'Prupe.1G221200' => 'ppe', 'Prupe.3G289000' => 'ppe', 'Prupe.5G147000' => 'ppe', 'Prupe.6G157300' => 'ppe', 'Prupe.7G163400' => 'ppe', 'Psat0s2177g0040' => 'psa', 'Psat3g174760' => 'psa', 'Psat3g192160' => 'psa', 'Psat4g058520' => 'psa', 'Psat4g096840' => 'psa', 'Psat7g037320' => 'psa', 'PSO017G1274' => 'pso', 'PSO017G5166' => 'pso', 'PSO063G4558' => 'pso', 'PSO170G4458' => 'pso', 'PSO170G5005' => 'pso', 'PSO210G6156' => 'pso', 'PSO210G6635' => 'pso', 'PSO210G7397' => 'pso', 'PSO210G7700' => 'pso', 'PSO455G0035' => 'pso', 'PSO455G0180' => 'pso', 'PSO478G4515' => 'pso', 'PSO832G1305' => 'pso', 'PSO832G3489' => 'pso', 'QL02p075247' => 'qlo', 'QL03p051148' => 'qlo', 'QL05p010313' => 'qlo', 'QL06p034627' => 'qlo', 'QL10p001889' => 'qlo', 'QL10p010846' => 'qlo', 'RcHm_v2.0_Chr1g0350621' => 'rch', 'RcHm_v2.0_Chr1g0350641' => 'rch', 'RcHm_v2.0_Chr2g0092891' => 'rch', 'RcHm_v2.0_Chr2g0100251' => 'rch', 'RcHm_v2.0_Chr2g0158661' => 'rch', 'RcHm_v2.0_Chr2g0172741' => 'rch', 'RcHm_v2.0_Chr4g0429571' => 'rch', 'RcHm_v2.0_Chr5g0042471' => 'rch', 'RcHm_v2.0_Chr7g0189451' => 'rch', 'Rhsim08G0052000' => 'rsi', 'Rhsim08G0174400' => 'rsi', 'Rhsim08G0193200' => 'rsi', 'Rhsim10G0214800' => 'rsi', 'Rhsim10G0214900' => 'rsi', 'Rhsim10G0215000' => 'rsi', 'Rhsim12G0022900' => 'rsi', 'Rhsim12G0177500' => 'rsi', 'Rhsim12G0177700' => 'rsi', 'Sabra03G0122600' => 'sbr', 'Sabra05G0097400' => 'sbr', 'Sabra12G0064100' => 'sbr', 'Sabra15G0121300' => 'sbr', 'SalBow2G0642' => 'sbo', 'SalBow5G2667' => 'sbo', 'SalBow5G4873' => 'sbo', 'SalBow8G2395' => 'sbo', 'Sc03g0003290' => 'sci', 'Sc10g0010130' => 'sci', 'Sc22g0003650' => 'sci', 'Sed0001603' => 'sed', 'Sed0004259' => 'sed', 'Sed0006789' => 'sed', 'Sed0011838' => 'sed', 'Sed0012964' => 'sed', 'Sed0016383' => 'sed', 'Sed0019010' => 'sed', 'Sed0020188' => 'sed', 'SEGI_04702' => 'sgi', 'SEGI_17231' => 'sgi', 'SEGI_18877' => 'sgi', 'SEGI_25196' => 'sgi', 'SEGI_25515' => 'sgi', 'SEGI_28445' => 'sgi', 'SEGI_37452' => 'sgi', 'SGA_v2.0_scaffold188G40336' => 'sas', 'SGA_v2.0_scaffold228G43247' => 'sas', 'SGA_v2.0_scaffold280G46853' => 'sas', 'SGA_v2.0_scaffold34G13808' => 'sas', 'SGA_v2.0_scaffold40G15576' => 'sas', 'SGA_v2.0_scaffold611G53188' => 'sas', 'SGA_v2.0_scaffold78G25461' => 'sas', 'SGA_v2.0_scaffold90G27888' => 'sas', 'SHI08601' => 'shi', 'SHI08606' => 'shi', 'SHI17117' => 'shi', 'SHI17119' => 'shi', 'SMO118G0201' => 'smo', 'SMO169G0247' => 'smo', 'SMO176G0006' => 'smo', 'SMO176G0015' => 'smo', 'SMO202G0006' => 'smo', 'SMO240G0050' => 'smo', 'SMO286G0009' => 'smo', 'SMO338G0033' => 'smo', 'SMO356G0533' => 'smo', 'SMO364G0382' => 'smo', 'SMO367G0166' => 'smo', 'SMO367G1098' => 'smo', 'Solyc01g009920.3' => 'sly', 'Solyc01g099300.3' => 'sly', 'Solyc02g084700.3' => 'sly', 'Solyc03g097520.3' => 'sly', 'Solyc06g071580.3' => 'sly', 'Solyc10g081760.3' => 'sly', 'Sopen01g005480' => 'spe', 'Sopen01g042850' => 'spe', 'Sopen02g029370' => 'spe', 'Sopen03g028280' => 'spe', 'Sopen06g027870' => 'spe', 'Sopen10g032270' => 'spe', 'Sp5g18180' => 'spa', 'Sp6g12880' => 'spa', 'Sp6g30850' => 'spa', 'Sp7g22960' => 'spa', 'Sp7g34010' => 'spa', 'SpUn1326_0010' => 'spa', 'TAR371G0242' => 'tar', 'TAR622G0638' => 'tar', 'TAR628G1548' => 'tar', 'TAR629G1079' => 'tar', 'TAR629G3413' => 'tar', 'THA.LOC104804249' => 'tha', 'THA.LOC104808315' => 'tha', 'THA.LOC104809238' => 'tha', 'THA.LOC104825484' => 'tha', 'Thecc.01G025500' => 'tca', 'Thecc.03G015800' => 'tca', 'Thecc.03G018000' => 'tca', 'Thecc.03G134800' => 'tca', 'Thecc.04G014700' => 'tca', 'Thhalv10006991m.g' => 'esa', 'Thhalv10012707m.g' => 'esa', 'Thhalv10015739m.g' => 'esa', 'Thhalv10024553m.g' => 'esa', 'Thhalv10024673m.g' => 'esa', 'Thhalv10029187m.g' => 'esa', 'TPR.G12971' => 'tpr', 'TPR.G29396' => 'tpr', 'TPR.G33376' => 'tpr', 'TPR.G35508' => 'tpr', 'TPR.G35516' => 'tpr', 'TPR.G37317' => 'tpr', 'TPR.G37389' => 'tpr', 'TPR.G37523' => 'tpr', 'TPR.G559' => 'tpr', 'TWI14G0070' => 'twi', 'TWI14G0729' => 'twi', 'TWI18G0596' => 'twi', 'TWI39G0780' => 'twi', 'TWI39G0850' => 'twi', 'TWI73G1052' => 'twi', 'unitig_52.g17485' => 'ugi', 'unitig_61.g26355' => 'ugi', 'vmacro01040' => 'vma', 'vmacro16731' => 'vma', 'vmacro18270' => 'vma', 'vmacro19142' => 'vma', 'vmacro19407' => 'vma', 'vmacro19408' => 'vma', 'vmacro21899' => 'vma', 'vmacro21900' => 'vma', 'vmacro21901' => 'vma', 'VMungo0251G0490' => 'vmu', 'VMungo0251G1748' => 'vmu', 'VMungo1309G0421' => 'vmu', 'Zm00001eb086500' => 'zma', 'Zm00001eb150680' => 'zma', 'Zm00001eb162330' => 'zma', 'Zm00001eb203130' => 'zma', 'Zm00001eb369480' => 'zma', 'Zm00001eb382340' => 'zma', 'Zm00001eb416360' => 'zma' ), 'gf_id' => 'HOM05D000902', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000902' ), 'data_identifier' => 'HOM05D000902', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000902', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '663', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02470' => 'bna', 'A01p16260' => 'bna', 'A02p01680' => 'bna', 'A03p16600' => 'bna', 'A03p55660' => 'bna', 'A03p64160' => 'bna', 'A03p64170' => 'bna', 'A08p31900' => 'bna', 'A09p59530' => 'bna', 'A10p08230' => 'bna', 'A10p25090' => 'bna', 'Aa31LG3G7100' => 'aar', 'Aa31LG3G7110' => 'aar', 'Aa31LG6G13160' => 'aar', 'Aa31LG7G10770' => 'aar', 'Aa31LG7G3830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2723' => 'aag', 'Actinidia08045' => 'ach', 'Actinidia08888' => 'ach', 'Actinidia18333' => 'ach', 'Actinidia19334' => 'ach', 'Actinidia25552' => 'ach', 'Actinidia26089' => 'ach', 'Actinidia30615' => 'ach', 'Actinidia30616' => 'ach', 'Actinidia33083' => 'ach', 'Actinidia35762' => 'ach', 'Ah.02g110620' => 'amhyb', 'Ah.11g046390' => 'amhyb', 'AL1G31670' => 'aly', 'AL6G23730' => 'aly', 'AL7G14740' => 'aly', 'AL7G14750' => 'aly', 'AL7G14760' => 'aly', 'AL7G28220' => 'aly', 'AL8G24940' => 'aly', 'Aqoxy3G01665' => 'aox', 'Aqoxy3G02853' => 'aox', 'Aqoxy5G01513' => 'aox', 'Aqoxy5G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8SKA4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ75LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKDA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0LJZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7REX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZP4YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWX7I5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2QKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS0L9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPCD8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q161UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC7XCF' => 'arhy', 'AT1G19100' => 'ath', 'AT4G24970' => 'ath', 'AT4G36270' => 'ath', 'AT4G36280' => 'ath', 'AT4G36290' => 'ath', 'AT5G13130' => 'ath', 'AT5G50780' => 'ath', 'ATR0582G266' => 'atr', 'ATR0661G195' => 'atr', 'ATR1152G031' => 'atr', 'Atru.chr11.2382' => 'acertr', 'Atru.chr12.2337' => 'acertr', 'Atru.chr3.744' => 'acertr', 'Atru.chr6.1870' => 'acertr', 'Atru.chr9.2515' => 'acertr', 'AUR62004120' => 'cqu', 'AUR62005667' => 'cqu', 'AUR62007634' => 'cqu', 'AUR62008186' => 'cqu', 'AUR62008187' => 'cqu', 'AUR62008188' => 'cqu', 'AUR62027954' => 'cqu', 'AUR62028766' => 'cqu', 'AUR62028767' => 'cqu', 'AUR62028768' => 'cqu', 'AUR62028886' => 'cqu', 'AUR62029563' => 'cqu', 'AUR62038832' => 'cqu', 'BcaB01g04149' => 'bca', 'BcaB03g12940' => 'bca', 'BcaB03g13090' => 'bca', 'BcaB03g14466' => 'bca', 'BcaB05g24035' => 'bca', 'BcaC01g06050' => 'bca', 'BcaC04g19148' => 'bca', 'BcaC04g20761' => 'bca', 'BcaC06g32845' => 'bca', 'BcaC07g41274' => 'bca', 'BcaC09g50827' => 'bca', 'BcaNung00741' => 'bca', 'BcaNung00742' => 'bca', 'BcaNung01859' => 'bca', 'BcaNung03985' => 'bca', 'BcaNung03989' => 'bca', 'BcaNung05661' => 'bca', 'BolC1t00257H' => 'bol', 'BolC1t01956H' => 'bol', 'BolC2t06534H' => 'bol', 'BolC3t14334H' => 'bol', 'BolC5t30451H' => 'bol', 'BolC7t45880H' => 'bol', 'BolC7t46586H' => 'bol', 'BolC8t49301H' => 'bol', 'BolC8t51837H' => 'bol', 'BolC9t56822H' => 'bol', 'BolC9t59235H' => 'bol', 'BraA01t00234Z' => 'bra', 'BraA01t01563Z' => 'bra', 'BraA02t05147Z' => 'bra', 'BraA03t10947Z' => 'bra', 'BraA03t14633Z' => 'bra', 'BraA08t35112Z' => 'bra', 'BraA09t41330Z' => 'bra', 'BraA10t44570Z' => 'bra', 'C01p02670' => 'bna', 'C01p20260' => 'bna', 'C02p05890' => 'bna', 'C03p19530' => 'bna', 'C05p17470' => 'bna', 'C07p53900' => 'bna', 'C07p61630' => 'bna', 'C08p16800' => 'bna', 'C08p42810' => 'bna', 'C09p39480' => 'bna', 'C09p63980' => 'bna', 'CAN.G1001.7' => 'can', 'CAN.G1034.55' => 'can', 'CAN.G143.7' => 'can', 'CAN.G3340.1' => 'can', 'CAN.G358.19' => 'can', 'CAN.G373.2' => 'can', 'CAN.G674.16' => 'can', 'CAN.G674.17' => 'can', 'CAN.G674.18' => 'can', 'CAN.G732.2' => 'can', 'CAN.G732.3' => 'can', 'CAN.G993.39' => 'can', 'CANSAT01G2052' => 'cansat', 'CANSAT80G0070' => 'cansat', 'CANSAT80G0483' => 'cansat', 'CANSAT80G0625' => 'cansat', 'CARHR019690' => 'chi', 'CARHR080280' => 'chi', 'CARHR152750' => 'chi', 'CARHR152760' => 'chi', 'CARHR152770' => 'chi', 'CARHR200340' => 'chi', 'CARHR232370' => 'chi', 'CARHR244670' => 'chi', 'CARHR244680' => 'chi', 'CARHR257520' => 'chi', 'Carub.0001s1872' => 'cru', 'Carub.0006s1130' => 'cru', 'Carub.0007s0396' => 'cru', 'Carub.0007s0397' => 'cru', 'Carub.0007s1608' => 'cru', 'Carub.0008s1068' => 'cru', 'Carub.0008s1077' => 'cru', 'Ca_16158_v3' => 'car', 'Ca_17571_v3' => 'car', 'Ca_21936_v3' => 'car', 'Ca_22350_v3' => 'car', 'CBR_g22445' => 'cbr', 'CBR_g26290' => 'cbr', 'Cc04_g09610' => 'ccan', 'Cc04_g12280' => 'ccan', 'Cc07_g10230' => 'ccan', 'CDE02G0093' => 'cde', 'CDE02G0701' => 'cde', 'CDE04G1050' => 'cde', 'CDE05G1833' => 'cde', 'CDE05G3058' => 'cde', 'CDE05G3380' => 'cde', 'CDE06G0536' => 'cde', 'Cfa006923' => 'cfa', 'Cfa009402' => 'cfa', 'Cfa018751' => 'cfa', 'Cfa019164' => 'cfa', 'Cfa022935' => 'cfa', 'Ciclev10019081m.g' => 'ccl', 'Ciclev10025076m.g' => 'ccl', 'Ciclev10030712m.g' => 'ccl', 'Ciclev10033760m.g' => 'ccl', 'CiPaw.05G105600' => 'cil', 'CiPaw.08G136700' => 'cil', 'CiPaw.11G003900' => 'cil', 'CiPaw.11G023700' => 'cil', 'CiPaw.12G003700' => 'cil', 'ClCG06G017100' => 'cla', 'ClCG06G018110' => 'cla', 'ClCG07G008800' => 'cla', 'ClCG07G015330' => 'cla', 'COL.COLO4_13698' => 'col', 'COL.COLO4_16659' => 'col', 'COL.COLO4_21986' => 'col', 'COL.COLO4_24049' => 'col', 'COL.COLO4_29061' => 'col', 'COL.COLO4_29075' => 'col', 'COL.COLO4_30094' => 'col', 'Cpa.g.c33689' => 'cpa', 'Cpa.g.sc108.39' => 'cpa', 'Cpa.g.sc108.41' => 'cpa', 'Cpa.g.sc1163.1' => 'cpa', 'Cpa.g.sc4.155' => 'cpa', 'Cpa.g.sc6.194' => 'cpa', 'CsaV3_1G000340' => 'csa', 'CsaV3_1G001400' => 'csa', 'CsaV3_4G002220' => 'csa', 'CsaV3_4G005370' => 'csa', 'CSS0007487' => 'camsi', 'CSS0008066' => 'camsi', 'CSS0009120' => 'camsi', 'CSS0015512' => 'camsi', 'CSS0022409' => 'camsi', 'CSS0025358' => 'camsi', 'CSS0044547' => 'camsi', 'DCAR_013057' => 'dca', 'DCAR_015058' => 'dca', 'DCAR_016027' => 'dca', 'DCAR_017327' => 'dca', 'DCAR_020743' => 'dca', 'DCAR_026157' => 'dca', 'DCAR_032339' => 'dca', 'DCAR_032340' => 'dca', 'Dinv11200' => 'din', 'Dinv11201' => 'din', 'Dinv20631' => 'din', 'Dinv23182' => 'din', 'Dinv33466' => 'din', 'Dinv33583' => 'din', 'Dinv38565' => 'din', 'Duzib068G0200' => 'dzi', 'Duzib147G0132' => 'dzi', 'Duzib147G0635' => 'dzi', 'Duzib205G1670' => 'dzi', 'Duzib251G0606' => 'dzi', 'ECA232G3336' => 'eca', 'ECA232G3763' => 'eca', 'ECA232G4845' => 'eca', 'ECA234G1607' => 'eca', 'ECA246G0932' => 'eca', 'ECA247G0781' => 'eca', 'ECA247G1932' => 'eca', 'ECA247G2079' => 'eca', 'ECA247G3338' => 'eca', 'ECA247G4115' => 'eca', 'EL10Ac3g06552' => 'bvu', 'EL10Ac5g10721' => 'bvu', 'EL10Ac5g10722' => 'bvu', 'EL10Ac5g10723' => 'bvu', 'EL10Ac5g11361' => 'bvu', 'EL10Ac6g13553' => 'bvu', 'EL10As8g23872' => 'bvu', 'Eucgr.B00250' => 'egr', 'Eucgr.B00251' => 'egr', 'Eucgr.B03533' => 'egr', 'Eucgr.I02381' => 'egr', 'Eucgr.K02700' => 'egr', 'FAN02G0174' => 'fan', 'FAN02G3146' => 'fan', 'FAN04G1672' => 'fan', 'FAN04G2273' => 'fan', 'FAN05G2791' => 'fan', 'FAN05G4035' => 'fan', 'FAN07G0834' => 'fan', 'FAN08G1198' => 'fan', 'FAN09G4182' => 'fan', 'FAN12G0496' => 'fan', 'FAN13G1027' => 'fan', 'FAN13G2951' => 'fan', 'FAN14G0705' => 'fan', 'FAN14G0720' => 'fan', 'FAN17G0201' => 'fan', 'FAN17G2665' => 'fan', 'FAN18G1456' => 'fan', 'FAN18G1525' => 'fan', 'FAN18G3500' => 'fan', 'FAN28G2670' => 'fan', 'FvH4_1g12391' => 'fve', 'FvH4_4g23220' => 'fve', 'FvH4_5g08810' => 'fve', 'FvH4_5g28960' => 'fve', 'FvH4_6g42820' => 'fve', 'FvH4_6g51110' => 'fve', 'Glyma.02G051802' => 'gma', 'Glyma.04G185300' => 'gma', 'Glyma.05G202900' => 'gma', 'Glyma.08G010300' => 'gma', 'Glyma.16G131900' => 'gma', 'Glyma.17G087900' => 'gma', 'Gohir.A07G048600' => 'ghi', 'Gohir.A11G179000' => 'ghi', 'Gohir.A12G140900' => 'ghi', 'Gohir.A12G140950' => 'ghi', 'Gohir.A12G191700' => 'ghi', 'Gohir.A13G086300' => 'ghi', 'Gohir.D07G052900' => 'ghi', 'Gohir.D11G186600' => 'ghi', 'Gohir.D12G145575' => 'ghi', 'Gohir.D12G145650' => 'ghi', 'Gohir.D12G145725' => 'ghi', 'Gohir.D12G194050' => 'ghi', 'Gohir.D13G091800' => 'ghi', 'Gorai.001G055900' => 'gra', 'Gorai.007G198400' => 'gra', 'Gorai.008G157000' => 'gra', 'Gorai.008G157100' => 'gra', 'Gorai.008G208700' => 'gra', 'Gorai.010G138700' => 'gra', 'GSVIVG01000977001' => 'vvi', 'GSVIVG01007708001' => 'vvi', 'GSVIVG01008587001' => 'vvi', 'GSVIVG01018849001' => 'vvi', 'GSVIVG01032432001' => 'vvi', 'HanXRQChr02g0034131' => 'han', 'HanXRQChr02g0035981' => 'han', 'HanXRQChr02g0035991' => 'han', 'HanXRQChr05g0155611' => 'han', 'HanXRQChr05g0155621' => 'han', 'HanXRQChr08g0236501' => 'han', 'HanXRQChr09g0261321' => 'han', 'HanXRQChr09g0272081' => 'han', 'HanXRQChr10g0310741' => 'han', 'HanXRQChr11g0325591' => 'han', 'HanXRQChr12g0385691' => 'han', 'HanXRQChr13g0387801' => 'han', 'HanXRQChr15g0463011' => 'han', 'Haze_03826' => 'cav', 'Haze_03827' => 'cav', 'Haze_07183' => 'cav', 'Haze_07537' => 'cav', 'Haze_07539' => 'cav', 'Haze_12461' => 'cav', 'Haze_16115' => 'cav', 'Haze_16808' => 'cav', 'Haze_18531' => 'cav', 'Hma1.2p1_0046F.1_g026700' => 'hma', 'Hma1.2p1_0046F.1_g026710' => 'hma', 'Hma1.2p1_0168F.1_g074340' => 'hma', 'Hma1.2p1_0266F.1_g107030' => 'hma', 'Hma1.2p1_0266F.1_g107060' => 'hma', 'Hma1.2p1_0275F.1_g110510' => 'hma', 'Hma1.2p1_0592F.1_g185490' => 'hma', 'Hma1.2p1_0592F.1_g185500' => 'hma', 'Hma1.2p1_0592F.1_g185510' => 'hma', 'Hma1.2p1_0592F.1_g185520' => 'hma', 'Hma1.2p1_0592F.1_g185530' => 'hma', 'Hma1.2p1_0818F.1_g223450' => 'hma', 'HPP92_009708' => 'vpl', 'HPP92_009793' => 'vpl', 'HPP92_009796' => 'vpl', 'HPP92_009797' => 'vpl', 'HPP92_014940' => 'vpl', 'HPP92_014988' => 'vpl', 'Hund02463' => 'sun', 'Hund02760' => 'sun', 'Hund05071' => 'sun', 'Hund10108' => 'sun', 'Hund11204' => 'sun', 'Hund14016' => 'sun', 'Hund16464' => 'sun', 'Lalb_Chr09g0333391' => 'lal', 'Lalb_Chr11g0070461' => 'lal', 'Lalb_Chr12g0201671' => 'lal', 'Lalb_Chr13g0297161' => 'lal', 'Lj1g0002823' => 'lja', 'Lj3C1074T6' => 'lonja', 'Lj4A212T28' => 'lonja', 'Lj4g0005516' => 'lja', 'Lj4g0013705' => 'lja', 'Lj4g0027865' => 'lja', 'Lj5C92G16' => 'lonja', 'Lj5C92T12' => 'lonja', 'Lj7C596T3' => 'lonja', 'Lj9A446G59' => 'lonja', 'Lj9A482G21' => 'lonja', 'Lsat_1_v5_gn_1_28261' => 'lsa', 'Lsat_1_v5_gn_1_28281' => 'lsa', 'Lsat_1_v5_gn_1_32721' => 'lsa', 'Lsat_1_v5_gn_4_151760' => 'lsa', 'Lsat_1_v5_gn_4_2120' => 'lsa', 'Lsat_1_v5_gn_4_75761' => 'lsa', 'Lsat_1_v5_gn_5_10920' => 'lsa', 'Manes.02G099900' => 'mes', 'Manes.11G096200' => 'mes', 'Manes.12G007200' => 'mes', 'Manes.14G048300' => 'mes', 'Manes.17G114700' => 'mes', 'Mapoly0002s0070' => 'mpo', 'Mapoly0029s0099' => 'mpo', 'MBI07_g24742_MAGBIO' => 'mbi', 'MBI10_g27988_MAGBIO' => 'mbi', 'MBI11_g13057_MAGBIO' => 'mbi', 'MD02G1137200' => 'mdo', 'MD06G1137200' => 'mdo', 'MD07G1122300' => 'mdo', 'MD09G1078200' => 'mdo', 'MD13G1123700' => 'mdo', 'MD14G1151900' => 'mdo', 'MD17G1030900' => 'mdo', 'MD17G1068200' => 'mdo', 'MD17G1068600' => 'mdo', 'Medtr3g077540' => 'mtr', 'Medtr4g105530' => 'mtr', 'Medtr8g076580' => 'mtr', 'Medtr8g076590' => 'mtr', 'Medtr8g096410' => 'mtr', 'MELO3C016411.2' => 'cme', 'MELO3C017780.2' => 'cme', 'MELO3C022560.2' => 'cme', 'MELO3C026187.2' => 'cme', 'MELO3C026286.2' => 'cme', 'MELO3C032854.2' => 'cme', 'Migut.H02495' => 'egut', 'Migut.I00561' => 'egut', 'Migut.K01015' => 'egut', 'Migut.K01016' => 'egut', 'Migut.L00743' => 'egut', 'Migut.L00744' => 'egut', 'Migut.L00746' => 'egut', 'Migut.L00798' => 'egut', 'Migut.L00799' => 'egut', 'Migut.N02096' => 'egut', 'MSTRG.11259' => 'ama', 'MSTRG.23142' => 'ama', 'MSTRG.2499' => 'ama', 'Nitab4.5_0000003g0730' => 'nta', 'Nitab4.5_0000137g0020' => 'nta', 'Nitab4.5_0000721g0210' => 'nta', 'Nitab4.5_0000723g0050' => 'nta', 'Nitab4.5_0000913g0070' => 'nta', 'Nitab4.5_0001332g0040' => 'nta', 'Nitab4.5_0001771g0050' => 'nta', 'Nitab4.5_0001918g0050' => 'nta', 'Nitab4.5_0002686g0030' => 'nta', 'Nitab4.5_0003156g0020' => 'nta', 'Nitab4.5_0003383g0040' => 'nta', 'Nitab4.5_0003918g0010' => 'nta', 'Nitab4.5_0006760g0010' => 'nta', 'Nn1g05981' => 'nnu', 'Nn1g06288' => 'nnu', 'Nn3g16371' => 'nnu', 'Nn3g16786' => 'nnu', 'Nn4g22232' => 'nnu', 'Oeu005144.1' => 'oeu', 'Oeu005145.1' => 'oeu', 'Oeu011348.1' => 'oeu', 'Oeu016415.1' => 'oeu', 'Oeu023501.1' => 'oeu', 'Oeu044473.1' => 'oeu', 'Oeu048892.2' => 'oeu', 'Os01g0549200' => 'osa', 'Os02g0469300' => 'osa', 'Os04g0311100' => 'osa', 'Os06g0474900' => 'osa', 'Os10g0181700' => 'osa', 'Os11g0454800' => 'osa', 'Peaxi162Scf00037g00714' => 'pax', 'Peaxi162Scf00084g01217' => 'pax', 'Peaxi162Scf00257g00217' => 'pax', 'Peaxi162Scf00516g00215' => 'pax', 'Peaxi162Scf00689g00123' => 'pax', 'PGR044G2719' => 'pgr', 'PGR083G1360' => 'pgr', 'PGR102G2849' => 'pgr', 'PGR119G2534' => 'pgr', 'PGSC0003DMG400003538' => 'stu', 'PGSC0003DMG400028138' => 'stu', 'PGSC0003DMG400031732' => 'stu', 'PGSC0003DMG400038165' => 'stu', 'Phvul.002G284600' => 'pvu', 'Phvul.003G258200' => 'pvu', 'Phvul.009G176500' => 'pvu', 'Potri.003G167201' => 'ptr', 'Potri.005G118400' => 'ptr', 'Potri.012G089000' => 'ptr', 'Potri.012G102800' => 'ptr', 'Potri.015G079400' => 'ptr', 'Potri.015G100900' => 'ptr', 'Pp3c14_9810' => 'ppa', 'Pp3c15_10450' => 'ppa', 'Pp3c20_19150' => 'ppa', 'Pp3c23_12740' => 'ppa', 'Pp3c23_6310' => 'ppa', 'Pp3c24_3720' => 'ppa', 'Pp3c27_2580' => 'ppa', 'Pp3c9_8990' => 'ppa', 'PRCOL_00002854' => 'pco', 'Prupe.1G221200' => 'ppe', 'Prupe.3G289000' => 'ppe', 'Prupe.5G147000' => 'ppe', 'Prupe.6G157300' => 'ppe', 'Prupe.7G163400' => 'ppe', 'Psat0s2177g0040' => 'psa', 'Psat3g174760' => 'psa', 'Psat3g192160' => 'psa', 'Psat4g058520' => 'psa', 'Psat4g096840' => 'psa', 'Psat7g037320' => 'psa', 'PSO017G1274' => 'pso', 'PSO017G5166' => 'pso', 'PSO063G4558' => 'pso', 'PSO170G4458' => 'pso', 'PSO170G5005' => 'pso', 'PSO210G6156' => 'pso', 'PSO210G6635' => 'pso', 'PSO210G7397' => 'pso', 'PSO210G7700' => 'pso', 'PSO455G0035' => 'pso', 'PSO455G0180' => 'pso', 'PSO478G4515' => 'pso', 'PSO832G1305' => 'pso', 'PSO832G3489' => 'pso', 'QL02p075247' => 'qlo', 'QL03p051148' => 'qlo', 'QL05p010313' => 'qlo', 'QL06p034627' => 'qlo', 'QL10p001889' => 'qlo', 'QL10p010846' => 'qlo', 'RcHm_v2.0_Chr1g0350621' => 'rch', 'RcHm_v2.0_Chr1g0350641' => 'rch', 'RcHm_v2.0_Chr2g0092891' => 'rch', 'RcHm_v2.0_Chr2g0100251' => 'rch', 'RcHm_v2.0_Chr2g0158661' => 'rch', 'RcHm_v2.0_Chr2g0172741' => 'rch', 'RcHm_v2.0_Chr4g0429571' => 'rch', 'RcHm_v2.0_Chr5g0042471' => 'rch', 'RcHm_v2.0_Chr7g0189451' => 'rch', 'Rhsim08G0052000' => 'rsi', 'Rhsim08G0174400' => 'rsi', 'Rhsim08G0193200' => 'rsi', 'Rhsim10G0214800' => 'rsi', 'Rhsim10G0214900' => 'rsi', 'Rhsim10G0215000' => 'rsi', 'Rhsim12G0022900' => 'rsi', 'Rhsim12G0177500' => 'rsi', 'Rhsim12G0177700' => 'rsi', 'Sabra03G0122600' => 'sbr', 'Sabra05G0097400' => 'sbr', 'Sabra12G0064100' => 'sbr', 'Sabra15G0121300' => 'sbr', 'SalBow2G0642' => 'sbo', 'SalBow5G2667' => 'sbo', 'SalBow5G4873' => 'sbo', 'SalBow8G2395' => 'sbo', 'Sc03g0003290' => 'sci', 'Sc10g0010130' => 'sci', 'Sc22g0003650' => 'sci', 'Sed0001603' => 'sed', 'Sed0004259' => 'sed', 'Sed0006789' => 'sed', 'Sed0011838' => 'sed', 'Sed0012964' => 'sed', 'Sed0016383' => 'sed', 'Sed0019010' => 'sed', 'Sed0020188' => 'sed', 'SEGI_04702' => 'sgi', 'SEGI_17231' => 'sgi', 'SEGI_18877' => 'sgi', 'SEGI_25196' => 'sgi', 'SEGI_25515' => 'sgi', 'SEGI_28445' => 'sgi', 'SEGI_37452' => 'sgi', 'SGA_v2.0_scaffold188G40336' => 'sas', 'SGA_v2.0_scaffold228G43247' => 'sas', 'SGA_v2.0_scaffold280G46853' => 'sas', 'SGA_v2.0_scaffold34G13808' => 'sas', 'SGA_v2.0_scaffold40G15576' => 'sas', 'SGA_v2.0_scaffold611G53188' => 'sas', 'SGA_v2.0_scaffold78G25461' => 'sas', 'SGA_v2.0_scaffold90G27888' => 'sas', 'SHI08601' => 'shi', 'SHI08606' => 'shi', 'SHI17117' => 'shi', 'SHI17119' => 'shi', 'SMO118G0201' => 'smo', 'SMO169G0247' => 'smo', 'SMO176G0006' => 'smo', 'SMO176G0015' => 'smo', 'SMO202G0006' => 'smo', 'SMO240G0050' => 'smo', 'SMO286G0009' => 'smo', 'SMO338G0033' => 'smo', 'SMO356G0533' => 'smo', 'SMO364G0382' => 'smo', 'SMO367G0166' => 'smo', 'SMO367G1098' => 'smo', 'Solyc01g009920.3' => 'sly', 'Solyc01g099300.3' => 'sly', 'Solyc02g084700.3' => 'sly', 'Solyc03g097520.3' => 'sly', 'Solyc06g071580.3' => 'sly', 'Solyc10g081760.3' => 'sly', 'Sopen01g005480' => 'spe', 'Sopen01g042850' => 'spe', 'Sopen02g029370' => 'spe', 'Sopen03g028280' => 'spe', 'Sopen06g027870' => 'spe', 'Sopen10g032270' => 'spe', 'Sp5g18180' => 'spa', 'Sp6g12880' => 'spa', 'Sp6g30850' => 'spa', 'Sp7g22960' => 'spa', 'Sp7g34010' => 'spa', 'SpUn1326_0010' => 'spa', 'TAR371G0242' => 'tar', 'TAR622G0638' => 'tar', 'TAR628G1548' => 'tar', 'TAR629G1079' => 'tar', 'TAR629G3413' => 'tar', 'THA.LOC104804249' => 'tha', 'THA.LOC104808315' => 'tha', 'THA.LOC104809238' => 'tha', 'THA.LOC104825484' => 'tha', 'Thecc.01G025500' => 'tca', 'Thecc.03G015800' => 'tca', 'Thecc.03G018000' => 'tca', 'Thecc.03G134800' => 'tca', 'Thecc.04G014700' => 'tca', 'Thhalv10006991m.g' => 'esa', 'Thhalv10012707m.g' => 'esa', 'Thhalv10015739m.g' => 'esa', 'Thhalv10024553m.g' => 'esa', 'Thhalv10024673m.g' => 'esa', 'Thhalv10029187m.g' => 'esa', 'TPR.G12971' => 'tpr', 'TPR.G29396' => 'tpr', 'TPR.G33376' => 'tpr', 'TPR.G35508' => 'tpr', 'TPR.G35516' => 'tpr', 'TPR.G37317' => 'tpr', 'TPR.G37389' => 'tpr', 'TPR.G37523' => 'tpr', 'TPR.G559' => 'tpr', 'TWI14G0070' => 'twi', 'TWI14G0729' => 'twi', 'TWI18G0596' => 'twi', 'TWI39G0780' => 'twi', 'TWI39G0850' => 'twi', 'TWI73G1052' => 'twi', 'unitig_52.g17485' => 'ugi', 'unitig_61.g26355' => 'ugi', 'vmacro01040' => 'vma', 'vmacro16731' => 'vma', 'vmacro18270' => 'vma', 'vmacro19142' => 'vma', 'vmacro19407' => 'vma', 'vmacro19408' => 'vma', 'vmacro21899' => 'vma', 'vmacro21900' => 'vma', 'vmacro21901' => 'vma', 'VMungo0251G0490' => 'vmu', 'VMungo0251G1748' => 'vmu', 'VMungo1309G0421' => 'vmu', 'Zm00001eb086500' => 'zma', 'Zm00001eb150680' => 'zma', 'Zm00001eb162330' => 'zma', 'Zm00001eb203130' => 'zma', 'Zm00001eb369480' => 'zma', 'Zm00001eb382340' => 'zma', 'Zm00001eb416360' => 'zma' ) $gf_id = 'HOM05D000902' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000902' ) $data_identifier = 'HOM05D000902' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 13, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 10, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 6, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 9, 'hma' => (int) 12, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 4, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 6, 'ppa' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 6, 'rch' => (int) 9, 'rsi' => (int) 9, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 12, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 3, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416360' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000902', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '663', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02470' => 'bna', 'A01p16260' => 'bna', 'A02p01680' => 'bna', 'A03p16600' => 'bna', 'A03p55660' => 'bna', 'A03p64160' => 'bna', 'A03p64170' => 'bna', 'A08p31900' => 'bna', 'A09p59530' => 'bna', 'A10p08230' => 'bna', 'A10p25090' => 'bna', 'Aa31LG3G7100' => 'aar', 'Aa31LG3G7110' => 'aar', 'Aa31LG6G13160' => 'aar', 'Aa31LG7G10770' => 'aar', 'Aa31LG7G3830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2723' => 'aag', 'Actinidia08045' => 'ach', 'Actinidia08888' => 'ach', 'Actinidia18333' => 'ach', 'Actinidia19334' => 'ach', 'Actinidia25552' => 'ach', 'Actinidia26089' => 'ach', 'Actinidia30615' => 'ach', 'Actinidia30616' => 'ach', 'Actinidia33083' => 'ach', 'Actinidia35762' => 'ach', 'Ah.02g110620' => 'amhyb', 'Ah.11g046390' => 'amhyb', 'AL1G31670' => 'aly', 'AL6G23730' => 'aly', 'AL7G14740' => 'aly', 'AL7G14750' => 'aly', 'AL7G14760' => 'aly', 'AL7G28220' => 'aly', 'AL8G24940' => 'aly', 'Aqoxy3G01665' => 'aox', 'Aqoxy3G02853' => 'aox', 'Aqoxy5G01513' => 'aox', 'Aqoxy5G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8SKA4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ75LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKDA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0LJZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7REX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZP4YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWX7I5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2QKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS0L9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPCD8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q161UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC7XCF' => 'arhy', 'AT1G19100' => 'ath', 'AT4G24970' => 'ath', 'AT4G36270' => 'ath', 'AT4G36280' => 'ath', 'AT4G36290' => 'ath', 'AT5G13130' => 'ath', 'AT5G50780' => 'ath', 'ATR0582G266' => 'atr', 'ATR0661G195' => 'atr', 'ATR1152G031' => 'atr', 'Atru.chr11.2382' => 'acertr', 'Atru.chr12.2337' => 'acertr', 'Atru.chr3.744' => 'acertr', 'Atru.chr6.1870' => 'acertr', 'Atru.chr9.2515' => 'acertr', 'AUR62004120' => 'cqu', 'AUR62005667' => 'cqu', 'AUR62007634' => 'cqu', 'AUR62008186' => 'cqu', 'AUR62008187' => 'cqu', 'AUR62008188' => 'cqu', 'AUR62027954' => 'cqu', 'AUR62028766' => 'cqu', 'AUR62028767' => 'cqu', 'AUR62028768' => 'cqu', 'AUR62028886' => 'cqu', 'AUR62029563' => 'cqu', 'AUR62038832' => 'cqu', 'BcaB01g04149' => 'bca', 'BcaB03g12940' => 'bca', 'BcaB03g13090' => 'bca', 'BcaB03g14466' => 'bca', 'BcaB05g24035' => 'bca', 'BcaC01g06050' => 'bca', 'BcaC04g19148' => 'bca', 'BcaC04g20761' => 'bca', 'BcaC06g32845' => 'bca', 'BcaC07g41274' => 'bca', 'BcaC09g50827' => 'bca', 'BcaNung00741' => 'bca', 'BcaNung00742' => 'bca', 'BcaNung01859' => 'bca', 'BcaNung03985' => 'bca', 'BcaNung03989' => 'bca', 'BcaNung05661' => 'bca', 'BolC1t00257H' => 'bol', 'BolC1t01956H' => 'bol', 'BolC2t06534H' => 'bol', 'BolC3t14334H' => 'bol', 'BolC5t30451H' => 'bol', 'BolC7t45880H' => 'bol', 'BolC7t46586H' => 'bol', 'BolC8t49301H' => 'bol', 'BolC8t51837H' => 'bol', 'BolC9t56822H' => 'bol', 'BolC9t59235H' => 'bol', 'BraA01t00234Z' => 'bra', 'BraA01t01563Z' => 'bra', 'BraA02t05147Z' => 'bra', 'BraA03t10947Z' => 'bra', 'BraA03t14633Z' => 'bra', 'BraA08t35112Z' => 'bra', 'BraA09t41330Z' => 'bra', 'BraA10t44570Z' => 'bra', 'C01p02670' => 'bna', 'C01p20260' => 'bna', 'C02p05890' => 'bna', 'C03p19530' => 'bna', 'C05p17470' => 'bna', 'C07p53900' => 'bna', 'C07p61630' => 'bna', 'C08p16800' => 'bna', 'C08p42810' => 'bna', 'C09p39480' => 'bna', 'C09p63980' => 'bna', 'CAN.G1001.7' => 'can', 'CAN.G1034.55' => 'can', 'CAN.G143.7' => 'can', 'CAN.G3340.1' => 'can', 'CAN.G358.19' => 'can', 'CAN.G373.2' => 'can', 'CAN.G674.16' => 'can', 'CAN.G674.17' => 'can', 'CAN.G674.18' => 'can', 'CAN.G732.2' => 'can', 'CAN.G732.3' => 'can', 'CAN.G993.39' => 'can', 'CANSAT01G2052' => 'cansat', 'CANSAT80G0070' => 'cansat', 'CANSAT80G0483' => 'cansat', 'CANSAT80G0625' => 'cansat', 'CARHR019690' => 'chi', 'CARHR080280' => 'chi', 'CARHR152750' => 'chi', 'CARHR152760' => 'chi', 'CARHR152770' => 'chi', 'CARHR200340' => 'chi', 'CARHR232370' => 'chi', 'CARHR244670' => 'chi', 'CARHR244680' => 'chi', 'CARHR257520' => 'chi', 'Carub.0001s1872' => 'cru', 'Carub.0006s1130' => 'cru', 'Carub.0007s0396' => 'cru', 'Carub.0007s0397' => 'cru', 'Carub.0007s1608' => 'cru', 'Carub.0008s1068' => 'cru', 'Carub.0008s1077' => 'cru', 'Ca_16158_v3' => 'car', 'Ca_17571_v3' => 'car', 'Ca_21936_v3' => 'car', 'Ca_22350_v3' => 'car', 'CBR_g22445' => 'cbr', 'CBR_g26290' => 'cbr', 'Cc04_g09610' => 'ccan', 'Cc04_g12280' => 'ccan', 'Cc07_g10230' => 'ccan', 'CDE02G0093' => 'cde', 'CDE02G0701' => 'cde', 'CDE04G1050' => 'cde', 'CDE05G1833' => 'cde', 'CDE05G3058' => 'cde', 'CDE05G3380' => 'cde', 'CDE06G0536' => 'cde', 'Cfa006923' => 'cfa', 'Cfa009402' => 'cfa', 'Cfa018751' => 'cfa', 'Cfa019164' => 'cfa', 'Cfa022935' => 'cfa', 'Ciclev10019081m.g' => 'ccl', 'Ciclev10025076m.g' => 'ccl', 'Ciclev10030712m.g' => 'ccl', 'Ciclev10033760m.g' => 'ccl', 'CiPaw.05G105600' => 'cil', 'CiPaw.08G136700' => 'cil', 'CiPaw.11G003900' => 'cil', 'CiPaw.11G023700' => 'cil', 'CiPaw.12G003700' => 'cil', 'ClCG06G017100' => 'cla', 'ClCG06G018110' => 'cla', 'ClCG07G008800' => 'cla', 'ClCG07G015330' => 'cla', 'COL.COLO4_13698' => 'col', 'COL.COLO4_16659' => 'col', 'COL.COLO4_21986' => 'col', 'COL.COLO4_24049' => 'col', 'COL.COLO4_29061' => 'col', 'COL.COLO4_29075' => 'col', 'COL.COLO4_30094' => 'col', 'Cpa.g.c33689' => 'cpa', 'Cpa.g.sc108.39' => 'cpa', 'Cpa.g.sc108.41' => 'cpa', 'Cpa.g.sc1163.1' => 'cpa', 'Cpa.g.sc4.155' => 'cpa', 'Cpa.g.sc6.194' => 'cpa', 'CsaV3_1G000340' => 'csa', 'CsaV3_1G001400' => 'csa', 'CsaV3_4G002220' => 'csa', 'CsaV3_4G005370' => 'csa', 'CSS0007487' => 'camsi', 'CSS0008066' => 'camsi', 'CSS0009120' => 'camsi', 'CSS0015512' => 'camsi', 'CSS0022409' => 'camsi', 'CSS0025358' => 'camsi', 'CSS0044547' => 'camsi', 'DCAR_013057' => 'dca', 'DCAR_015058' => 'dca', 'DCAR_016027' => 'dca', 'DCAR_017327' => 'dca', 'DCAR_020743' => 'dca', 'DCAR_026157' => 'dca', 'DCAR_032339' => 'dca', 'DCAR_032340' => 'dca', 'Dinv11200' => 'din', 'Dinv11201' => 'din', 'Dinv20631' => 'din', 'Dinv23182' => 'din', 'Dinv33466' => 'din', 'Dinv33583' => 'din', 'Dinv38565' => 'din', 'Duzib068G0200' => 'dzi', 'Duzib147G0132' => 'dzi', 'Duzib147G0635' => 'dzi', 'Duzib205G1670' => 'dzi', 'Duzib251G0606' => 'dzi', 'ECA232G3336' => 'eca', 'ECA232G3763' => 'eca', 'ECA232G4845' => 'eca', 'ECA234G1607' => 'eca', 'ECA246G0932' => 'eca', 'ECA247G0781' => 'eca', 'ECA247G1932' => 'eca', 'ECA247G2079' => 'eca', 'ECA247G3338' => 'eca', 'ECA247G4115' => 'eca', 'EL10Ac3g06552' => 'bvu', 'EL10Ac5g10721' => 'bvu', 'EL10Ac5g10722' => 'bvu', 'EL10Ac5g10723' => 'bvu', 'EL10Ac5g11361' => 'bvu', 'EL10Ac6g13553' => 'bvu', 'EL10As8g23872' => 'bvu', 'Eucgr.B00250' => 'egr', 'Eucgr.B00251' => 'egr', 'Eucgr.B03533' => 'egr', 'Eucgr.I02381' => 'egr', 'Eucgr.K02700' => 'egr', 'FAN02G0174' => 'fan', 'FAN02G3146' => 'fan', 'FAN04G1672' => 'fan', 'FAN04G2273' => 'fan', 'FAN05G2791' => 'fan', 'FAN05G4035' => 'fan', 'FAN07G0834' => 'fan', 'FAN08G1198' => 'fan', 'FAN09G4182' => 'fan', 'FAN12G0496' => 'fan', 'FAN13G1027' => 'fan', 'FAN13G2951' => 'fan', 'FAN14G0705' => 'fan', 'FAN14G0720' => 'fan', 'FAN17G0201' => 'fan', 'FAN17G2665' => 'fan', 'FAN18G1456' => 'fan', 'FAN18G1525' => 'fan', 'FAN18G3500' => 'fan', 'FAN28G2670' => 'fan', 'FvH4_1g12391' => 'fve', 'FvH4_4g23220' => 'fve', 'FvH4_5g08810' => 'fve', 'FvH4_5g28960' => 'fve', 'FvH4_6g42820' => 'fve', 'FvH4_6g51110' => 'fve', 'Glyma.02G051802' => 'gma', 'Glyma.04G185300' => 'gma', 'Glyma.05G202900' => 'gma', 'Glyma.08G010300' => 'gma', 'Glyma.16G131900' => 'gma', 'Glyma.17G087900' => 'gma', 'Gohir.A07G048600' => 'ghi', 'Gohir.A11G179000' => 'ghi', 'Gohir.A12G140900' => 'ghi', 'Gohir.A12G140950' => 'ghi', 'Gohir.A12G191700' => 'ghi', 'Gohir.A13G086300' => 'ghi', 'Gohir.D07G052900' => 'ghi', 'Gohir.D11G186600' => 'ghi', 'Gohir.D12G145575' => 'ghi', 'Gohir.D12G145650' => 'ghi', 'Gohir.D12G145725' => 'ghi', 'Gohir.D12G194050' => 'ghi', 'Gohir.D13G091800' => 'ghi', 'Gorai.001G055900' => 'gra', 'Gorai.007G198400' => 'gra', 'Gorai.008G157000' => 'gra', 'Gorai.008G157100' => 'gra', 'Gorai.008G208700' => 'gra', 'Gorai.010G138700' => 'gra', 'GSVIVG01000977001' => 'vvi', 'GSVIVG01007708001' => 'vvi', 'GSVIVG01008587001' => 'vvi', 'GSVIVG01018849001' => 'vvi', 'GSVIVG01032432001' => 'vvi', 'HanXRQChr02g0034131' => 'han', 'HanXRQChr02g0035981' => 'han', 'HanXRQChr02g0035991' => 'han', 'HanXRQChr05g0155611' => 'han', 'HanXRQChr05g0155621' => 'han', 'HanXRQChr08g0236501' => 'han', 'HanXRQChr09g0261321' => 'han', 'HanXRQChr09g0272081' => 'han', 'HanXRQChr10g0310741' => 'han', 'HanXRQChr11g0325591' => 'han', 'HanXRQChr12g0385691' => 'han', 'HanXRQChr13g0387801' => 'han', 'HanXRQChr15g0463011' => 'han', 'Haze_03826' => 'cav', 'Haze_03827' => 'cav', 'Haze_07183' => 'cav', 'Haze_07537' => 'cav', 'Haze_07539' => 'cav', 'Haze_12461' => 'cav', 'Haze_16115' => 'cav', 'Haze_16808' => 'cav', 'Haze_18531' => 'cav', 'Hma1.2p1_0046F.1_g026700' => 'hma', 'Hma1.2p1_0046F.1_g026710' => 'hma', 'Hma1.2p1_0168F.1_g074340' => 'hma', 'Hma1.2p1_0266F.1_g107030' => 'hma', 'Hma1.2p1_0266F.1_g107060' => 'hma', 'Hma1.2p1_0275F.1_g110510' => 'hma', 'Hma1.2p1_0592F.1_g185490' => 'hma', 'Hma1.2p1_0592F.1_g185500' => 'hma', 'Hma1.2p1_0592F.1_g185510' => 'hma', 'Hma1.2p1_0592F.1_g185520' => 'hma', 'Hma1.2p1_0592F.1_g185530' => 'hma', 'Hma1.2p1_0818F.1_g223450' => 'hma', 'HPP92_009708' => 'vpl', 'HPP92_009793' => 'vpl', 'HPP92_009796' => 'vpl', 'HPP92_009797' => 'vpl', 'HPP92_014940' => 'vpl', 'HPP92_014988' => 'vpl', 'Hund02463' => 'sun', 'Hund02760' => 'sun', 'Hund05071' => 'sun', 'Hund10108' => 'sun', 'Hund11204' => 'sun', 'Hund14016' => 'sun', 'Hund16464' => 'sun', 'Lalb_Chr09g0333391' => 'lal', 'Lalb_Chr11g0070461' => 'lal', 'Lalb_Chr12g0201671' => 'lal', 'Lalb_Chr13g0297161' => 'lal', 'Lj1g0002823' => 'lja', 'Lj3C1074T6' => 'lonja', 'Lj4A212T28' => 'lonja', 'Lj4g0005516' => 'lja', 'Lj4g0013705' => 'lja', 'Lj4g0027865' => 'lja', 'Lj5C92G16' => 'lonja', 'Lj5C92T12' => 'lonja', 'Lj7C596T3' => 'lonja', 'Lj9A446G59' => 'lonja', 'Lj9A482G21' => 'lonja', 'Lsat_1_v5_gn_1_28261' => 'lsa', 'Lsat_1_v5_gn_1_28281' => 'lsa', 'Lsat_1_v5_gn_1_32721' => 'lsa', 'Lsat_1_v5_gn_4_151760' => 'lsa', 'Lsat_1_v5_gn_4_2120' => 'lsa', 'Lsat_1_v5_gn_4_75761' => 'lsa', 'Lsat_1_v5_gn_5_10920' => 'lsa', 'Manes.02G099900' => 'mes', 'Manes.11G096200' => 'mes', 'Manes.12G007200' => 'mes', 'Manes.14G048300' => 'mes', 'Manes.17G114700' => 'mes', 'Mapoly0002s0070' => 'mpo', 'Mapoly0029s0099' => 'mpo', 'MBI07_g24742_MAGBIO' => 'mbi', 'MBI10_g27988_MAGBIO' => 'mbi', 'MBI11_g13057_MAGBIO' => 'mbi', 'MD02G1137200' => 'mdo', 'MD06G1137200' => 'mdo', 'MD07G1122300' => 'mdo', 'MD09G1078200' => 'mdo', 'MD13G1123700' => 'mdo', 'MD14G1151900' => 'mdo', 'MD17G1030900' => 'mdo', 'MD17G1068200' => 'mdo', 'MD17G1068600' => 'mdo', 'Medtr3g077540' => 'mtr', 'Medtr4g105530' => 'mtr', 'Medtr8g076580' => 'mtr', 'Medtr8g076590' => 'mtr', 'Medtr8g096410' => 'mtr', 'MELO3C016411.2' => 'cme', 'MELO3C017780.2' => 'cme', 'MELO3C022560.2' => 'cme', 'MELO3C026187.2' => 'cme', 'MELO3C026286.2' => 'cme', 'MELO3C032854.2' => 'cme', 'Migut.H02495' => 'egut', 'Migut.I00561' => 'egut', 'Migut.K01015' => 'egut', 'Migut.K01016' => 'egut', 'Migut.L00743' => 'egut', 'Migut.L00744' => 'egut', 'Migut.L00746' => 'egut', 'Migut.L00798' => 'egut', 'Migut.L00799' => 'egut', 'Migut.N02096' => 'egut', 'MSTRG.11259' => 'ama', 'MSTRG.23142' => 'ama', 'MSTRG.2499' => 'ama', 'Nitab4.5_0000003g0730' => 'nta', 'Nitab4.5_0000137g0020' => 'nta', 'Nitab4.5_0000721g0210' => 'nta', 'Nitab4.5_0000723g0050' => 'nta', 'Nitab4.5_0000913g0070' => 'nta', 'Nitab4.5_0001332g0040' => 'nta', 'Nitab4.5_0001771g0050' => 'nta', 'Nitab4.5_0001918g0050' => 'nta', 'Nitab4.5_0002686g0030' => 'nta', 'Nitab4.5_0003156g0020' => 'nta', 'Nitab4.5_0003383g0040' => 'nta', 'Nitab4.5_0003918g0010' => 'nta', 'Nitab4.5_0006760g0010' => 'nta', 'Nn1g05981' => 'nnu', 'Nn1g06288' => 'nnu', 'Nn3g16371' => 'nnu', 'Nn3g16786' => 'nnu', 'Nn4g22232' => 'nnu', 'Oeu005144.1' => 'oeu', 'Oeu005145.1' => 'oeu', 'Oeu011348.1' => 'oeu', 'Oeu016415.1' => 'oeu', 'Oeu023501.1' => 'oeu', 'Oeu044473.1' => 'oeu', 'Oeu048892.2' => 'oeu', 'Os01g0549200' => 'osa', 'Os02g0469300' => 'osa', 'Os04g0311100' => 'osa', 'Os06g0474900' => 'osa', 'Os10g0181700' => 'osa', 'Os11g0454800' => 'osa', 'Peaxi162Scf00037g00714' => 'pax', 'Peaxi162Scf00084g01217' => 'pax', 'Peaxi162Scf00257g00217' => 'pax', 'Peaxi162Scf00516g00215' => 'pax', 'Peaxi162Scf00689g00123' => 'pax', 'PGR044G2719' => 'pgr', 'PGR083G1360' => 'pgr', 'PGR102G2849' => 'pgr', 'PGR119G2534' => 'pgr', 'PGSC0003DMG400003538' => 'stu', 'PGSC0003DMG400028138' => 'stu', 'PGSC0003DMG400031732' => 'stu', 'PGSC0003DMG400038165' => 'stu', 'Phvul.002G284600' => 'pvu', 'Phvul.003G258200' => 'pvu', 'Phvul.009G176500' => 'pvu', 'Potri.003G167201' => 'ptr', 'Potri.005G118400' => 'ptr', 'Potri.012G089000' => 'ptr', 'Potri.012G102800' => 'ptr', 'Potri.015G079400' => 'ptr', 'Potri.015G100900' => 'ptr', 'Pp3c14_9810' => 'ppa', 'Pp3c15_10450' => 'ppa', 'Pp3c20_19150' => 'ppa', 'Pp3c23_12740' => 'ppa', 'Pp3c23_6310' => 'ppa', 'Pp3c24_3720' => 'ppa', 'Pp3c27_2580' => 'ppa', 'Pp3c9_8990' => 'ppa', 'PRCOL_00002854' => 'pco', 'Prupe.1G221200' => 'ppe', 'Prupe.3G289000' => 'ppe', 'Prupe.5G147000' => 'ppe', 'Prupe.6G157300' => 'ppe', 'Prupe.7G163400' => 'ppe', 'Psat0s2177g0040' => 'psa', 'Psat3g174760' => 'psa', 'Psat3g192160' => 'psa', 'Psat4g058520' => 'psa', 'Psat4g096840' => 'psa', 'Psat7g037320' => 'psa', 'PSO017G1274' => 'pso', 'PSO017G5166' => 'pso', 'PSO063G4558' => 'pso', 'PSO170G4458' => 'pso', 'PSO170G5005' => 'pso', 'PSO210G6156' => 'pso', 'PSO210G6635' => 'pso', 'PSO210G7397' => 'pso', 'PSO210G7700' => 'pso', 'PSO455G0035' => 'pso', 'PSO455G0180' => 'pso', 'PSO478G4515' => 'pso', 'PSO832G1305' => 'pso', 'PSO832G3489' => 'pso', 'QL02p075247' => 'qlo', 'QL03p051148' => 'qlo', 'QL05p010313' => 'qlo', 'QL06p034627' => 'qlo', 'QL10p001889' => 'qlo', 'QL10p010846' => 'qlo', 'RcHm_v2.0_Chr1g0350621' => 'rch', 'RcHm_v2.0_Chr1g0350641' => 'rch', 'RcHm_v2.0_Chr2g0092891' => 'rch', 'RcHm_v2.0_Chr2g0100251' => 'rch', 'RcHm_v2.0_Chr2g0158661' => 'rch', 'RcHm_v2.0_Chr2g0172741' => 'rch', 'RcHm_v2.0_Chr4g0429571' => 'rch', 'RcHm_v2.0_Chr5g0042471' => 'rch', 'RcHm_v2.0_Chr7g0189451' => 'rch', 'Rhsim08G0052000' => 'rsi', 'Rhsim08G0174400' => 'rsi', 'Rhsim08G0193200' => 'rsi', 'Rhsim10G0214800' => 'rsi', 'Rhsim10G0214900' => 'rsi', 'Rhsim10G0215000' => 'rsi', 'Rhsim12G0022900' => 'rsi', 'Rhsim12G0177500' => 'rsi', 'Rhsim12G0177700' => 'rsi', 'Sabra03G0122600' => 'sbr', 'Sabra05G0097400' => 'sbr', 'Sabra12G0064100' => 'sbr', 'Sabra15G0121300' => 'sbr', 'SalBow2G0642' => 'sbo', 'SalBow5G2667' => 'sbo', 'SalBow5G4873' => 'sbo', 'SalBow8G2395' => 'sbo', 'Sc03g0003290' => 'sci', 'Sc10g0010130' => 'sci', 'Sc22g0003650' => 'sci', 'Sed0001603' => 'sed', 'Sed0004259' => 'sed', 'Sed0006789' => 'sed', 'Sed0011838' => 'sed', 'Sed0012964' => 'sed', 'Sed0016383' => 'sed', 'Sed0019010' => 'sed', 'Sed0020188' => 'sed', 'SEGI_04702' => 'sgi', 'SEGI_17231' => 'sgi', 'SEGI_18877' => 'sgi', 'SEGI_25196' => 'sgi', 'SEGI_25515' => 'sgi', 'SEGI_28445' => 'sgi', 'SEGI_37452' => 'sgi', 'SGA_v2.0_scaffold188G40336' => 'sas', 'SGA_v2.0_scaffold228G43247' => 'sas', 'SGA_v2.0_scaffold280G46853' => 'sas', 'SGA_v2.0_scaffold34G13808' => 'sas', 'SGA_v2.0_scaffold40G15576' => 'sas', 'SGA_v2.0_scaffold611G53188' => 'sas', 'SGA_v2.0_scaffold78G25461' => 'sas', 'SGA_v2.0_scaffold90G27888' => 'sas', 'SHI08601' => 'shi', 'SHI08606' => 'shi', 'SHI17117' => 'shi', 'SHI17119' => 'shi', 'SMO118G0201' => 'smo', 'SMO169G0247' => 'smo', 'SMO176G0006' => 'smo', 'SMO176G0015' => 'smo', 'SMO202G0006' => 'smo', 'SMO240G0050' => 'smo', 'SMO286G0009' => 'smo', 'SMO338G0033' => 'smo', 'SMO356G0533' => 'smo', 'SMO364G0382' => 'smo', 'SMO367G0166' => 'smo', 'SMO367G1098' => 'smo', 'Solyc01g009920.3' => 'sly', 'Solyc01g099300.3' => 'sly', 'Solyc02g084700.3' => 'sly', 'Solyc03g097520.3' => 'sly', 'Solyc06g071580.3' => 'sly', 'Solyc10g081760.3' => 'sly', 'Sopen01g005480' => 'spe', 'Sopen01g042850' => 'spe', 'Sopen02g029370' => 'spe', 'Sopen03g028280' => 'spe', 'Sopen06g027870' => 'spe', 'Sopen10g032270' => 'spe', 'Sp5g18180' => 'spa', 'Sp6g12880' => 'spa', 'Sp6g30850' => 'spa', 'Sp7g22960' => 'spa', 'Sp7g34010' => 'spa', 'SpUn1326_0010' => 'spa', 'TAR371G0242' => 'tar', 'TAR622G0638' => 'tar', 'TAR628G1548' => 'tar', 'TAR629G1079' => 'tar', 'TAR629G3413' => 'tar', 'THA.LOC104804249' => 'tha', 'THA.LOC104808315' => 'tha', 'THA.LOC104809238' => 'tha', 'THA.LOC104825484' => 'tha', 'Thecc.01G025500' => 'tca', 'Thecc.03G015800' => 'tca', 'Thecc.03G018000' => 'tca', 'Thecc.03G134800' => 'tca', 'Thecc.04G014700' => 'tca', 'Thhalv10006991m.g' => 'esa', 'Thhalv10012707m.g' => 'esa', 'Thhalv10015739m.g' => 'esa', 'Thhalv10024553m.g' => 'esa', 'Thhalv10024673m.g' => 'esa', 'Thhalv10029187m.g' => 'esa', 'TPR.G12971' => 'tpr', 'TPR.G29396' => 'tpr', 'TPR.G33376' => 'tpr', 'TPR.G35508' => 'tpr', 'TPR.G35516' => 'tpr', 'TPR.G37317' => 'tpr', 'TPR.G37389' => 'tpr', 'TPR.G37523' => 'tpr', 'TPR.G559' => 'tpr', 'TWI14G0070' => 'twi', 'TWI14G0729' => 'twi', 'TWI18G0596' => 'twi', 'TWI39G0780' => 'twi', 'TWI39G0850' => 'twi', 'TWI73G1052' => 'twi', 'unitig_52.g17485' => 'ugi', 'unitig_61.g26355' => 'ugi', 'vmacro01040' => 'vma', 'vmacro16731' => 'vma', 'vmacro18270' => 'vma', 'vmacro19142' => 'vma', 'vmacro19407' => 'vma', 'vmacro19408' => 'vma', 'vmacro21899' => 'vma', 'vmacro21900' => 'vma', 'vmacro21901' => 'vma', 'VMungo0251G0490' => 'vmu', 'VMungo0251G1748' => 'vmu', 'VMungo1309G0421' => 'vmu', 'Zm00001eb086500' => 'zma', 'Zm00001eb150680' => 'zma', 'Zm00001eb162330' => 'zma', 'Zm00001eb203130' => 'zma', 'Zm00001eb369480' => 'zma', 'Zm00001eb382340' => 'zma', 'Zm00001eb416360' => 'zma' ), 'gf_id' => 'HOM05D000902', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000902' ), 'data_identifier' => 'HOM05D000902', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000902', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '663', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02470' => 'bna', 'A01p16260' => 'bna', 'A02p01680' => 'bna', 'A03p16600' => 'bna', 'A03p55660' => 'bna', 'A03p64160' => 'bna', 'A03p64170' => 'bna', 'A08p31900' => 'bna', 'A09p59530' => 'bna', 'A10p08230' => 'bna', 'A10p25090' => 'bna', 'Aa31LG3G7100' => 'aar', 'Aa31LG3G7110' => 'aar', 'Aa31LG6G13160' => 'aar', 'Aa31LG7G10770' => 'aar', 'Aa31LG7G3830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2723' => 'aag', 'Actinidia08045' => 'ach', 'Actinidia08888' => 'ach', 'Actinidia18333' => 'ach', 'Actinidia19334' => 'ach', 'Actinidia25552' => 'ach', 'Actinidia26089' => 'ach', 'Actinidia30615' => 'ach', 'Actinidia30616' => 'ach', 'Actinidia33083' => 'ach', 'Actinidia35762' => 'ach', 'Ah.02g110620' => 'amhyb', 'Ah.11g046390' => 'amhyb', 'AL1G31670' => 'aly', 'AL6G23730' => 'aly', 'AL7G14740' => 'aly', 'AL7G14750' => 'aly', 'AL7G14760' => 'aly', 'AL7G28220' => 'aly', 'AL8G24940' => 'aly', 'Aqoxy3G01665' => 'aox', 'Aqoxy3G02853' => 'aox', 'Aqoxy5G01513' => 'aox', 'Aqoxy5G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8SKA4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ75LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKDA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0LJZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7REX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZP4YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWX7I5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2QKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS0L9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPCD8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q161UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC7XCF' => 'arhy', 'AT1G19100' => 'ath', 'AT4G24970' => 'ath', 'AT4G36270' => 'ath', 'AT4G36280' => 'ath', 'AT4G36290' => 'ath', 'AT5G13130' => 'ath', 'AT5G50780' => 'ath', 'ATR0582G266' => 'atr', 'ATR0661G195' => 'atr', 'ATR1152G031' => 'atr', 'Atru.chr11.2382' => 'acertr', 'Atru.chr12.2337' => 'acertr', 'Atru.chr3.744' => 'acertr', 'Atru.chr6.1870' => 'acertr', 'Atru.chr9.2515' => 'acertr', 'AUR62004120' => 'cqu', 'AUR62005667' => 'cqu', 'AUR62007634' => 'cqu', 'AUR62008186' => 'cqu', 'AUR62008187' => 'cqu', 'AUR62008188' => 'cqu', 'AUR62027954' => 'cqu', 'AUR62028766' => 'cqu', 'AUR62028767' => 'cqu', 'AUR62028768' => 'cqu', 'AUR62028886' => 'cqu', 'AUR62029563' => 'cqu', 'AUR62038832' => 'cqu', 'BcaB01g04149' => 'bca', 'BcaB03g12940' => 'bca', 'BcaB03g13090' => 'bca', 'BcaB03g14466' => 'bca', 'BcaB05g24035' => 'bca', 'BcaC01g06050' => 'bca', 'BcaC04g19148' => 'bca', 'BcaC04g20761' => 'bca', 'BcaC06g32845' => 'bca', 'BcaC07g41274' => 'bca', 'BcaC09g50827' => 'bca', 'BcaNung00741' => 'bca', 'BcaNung00742' => 'bca', 'BcaNung01859' => 'bca', 'BcaNung03985' => 'bca', 'BcaNung03989' => 'bca', 'BcaNung05661' => 'bca', 'BolC1t00257H' => 'bol', 'BolC1t01956H' => 'bol', 'BolC2t06534H' => 'bol', 'BolC3t14334H' => 'bol', 'BolC5t30451H' => 'bol', 'BolC7t45880H' => 'bol', 'BolC7t46586H' => 'bol', 'BolC8t49301H' => 'bol', 'BolC8t51837H' => 'bol', 'BolC9t56822H' => 'bol', 'BolC9t59235H' => 'bol', 'BraA01t00234Z' => 'bra', 'BraA01t01563Z' => 'bra', 'BraA02t05147Z' => 'bra', 'BraA03t10947Z' => 'bra', 'BraA03t14633Z' => 'bra', 'BraA08t35112Z' => 'bra', 'BraA09t41330Z' => 'bra', 'BraA10t44570Z' => 'bra', 'C01p02670' => 'bna', 'C01p20260' => 'bna', 'C02p05890' => 'bna', 'C03p19530' => 'bna', 'C05p17470' => 'bna', 'C07p53900' => 'bna', 'C07p61630' => 'bna', 'C08p16800' => 'bna', 'C08p42810' => 'bna', 'C09p39480' => 'bna', 'C09p63980' => 'bna', 'CAN.G1001.7' => 'can', 'CAN.G1034.55' => 'can', 'CAN.G143.7' => 'can', 'CAN.G3340.1' => 'can', 'CAN.G358.19' => 'can', 'CAN.G373.2' => 'can', 'CAN.G674.16' => 'can', 'CAN.G674.17' => 'can', 'CAN.G674.18' => 'can', 'CAN.G732.2' => 'can', 'CAN.G732.3' => 'can', 'CAN.G993.39' => 'can', 'CANSAT01G2052' => 'cansat', 'CANSAT80G0070' => 'cansat', 'CANSAT80G0483' => 'cansat', 'CANSAT80G0625' => 'cansat', 'CARHR019690' => 'chi', 'CARHR080280' => 'chi', 'CARHR152750' => 'chi', 'CARHR152760' => 'chi', 'CARHR152770' => 'chi', 'CARHR200340' => 'chi', 'CARHR232370' => 'chi', 'CARHR244670' => 'chi', 'CARHR244680' => 'chi', 'CARHR257520' => 'chi', 'Carub.0001s1872' => 'cru', 'Carub.0006s1130' => 'cru', 'Carub.0007s0396' => 'cru', 'Carub.0007s0397' => 'cru', 'Carub.0007s1608' => 'cru', 'Carub.0008s1068' => 'cru', 'Carub.0008s1077' => 'cru', 'Ca_16158_v3' => 'car', 'Ca_17571_v3' => 'car', 'Ca_21936_v3' => 'car', 'Ca_22350_v3' => 'car', 'CBR_g22445' => 'cbr', 'CBR_g26290' => 'cbr', 'Cc04_g09610' => 'ccan', 'Cc04_g12280' => 'ccan', 'Cc07_g10230' => 'ccan', 'CDE02G0093' => 'cde', 'CDE02G0701' => 'cde', 'CDE04G1050' => 'cde', 'CDE05G1833' => 'cde', 'CDE05G3058' => 'cde', 'CDE05G3380' => 'cde', 'CDE06G0536' => 'cde', 'Cfa006923' => 'cfa', 'Cfa009402' => 'cfa', 'Cfa018751' => 'cfa', 'Cfa019164' => 'cfa', 'Cfa022935' => 'cfa', 'Ciclev10019081m.g' => 'ccl', 'Ciclev10025076m.g' => 'ccl', 'Ciclev10030712m.g' => 'ccl', 'Ciclev10033760m.g' => 'ccl', 'CiPaw.05G105600' => 'cil', 'CiPaw.08G136700' => 'cil', 'CiPaw.11G003900' => 'cil', 'CiPaw.11G023700' => 'cil', 'CiPaw.12G003700' => 'cil', 'ClCG06G017100' => 'cla', 'ClCG06G018110' => 'cla', 'ClCG07G008800' => 'cla', 'ClCG07G015330' => 'cla', 'COL.COLO4_13698' => 'col', 'COL.COLO4_16659' => 'col', 'COL.COLO4_21986' => 'col', 'COL.COLO4_24049' => 'col', 'COL.COLO4_29061' => 'col', 'COL.COLO4_29075' => 'col', 'COL.COLO4_30094' => 'col', 'Cpa.g.c33689' => 'cpa', 'Cpa.g.sc108.39' => 'cpa', 'Cpa.g.sc108.41' => 'cpa', 'Cpa.g.sc1163.1' => 'cpa', 'Cpa.g.sc4.155' => 'cpa', 'Cpa.g.sc6.194' => 'cpa', 'CsaV3_1G000340' => 'csa', 'CsaV3_1G001400' => 'csa', 'CsaV3_4G002220' => 'csa', 'CsaV3_4G005370' => 'csa', 'CSS0007487' => 'camsi', 'CSS0008066' => 'camsi', 'CSS0009120' => 'camsi', 'CSS0015512' => 'camsi', 'CSS0022409' => 'camsi', 'CSS0025358' => 'camsi', 'CSS0044547' => 'camsi', 'DCAR_013057' => 'dca', 'DCAR_015058' => 'dca', 'DCAR_016027' => 'dca', 'DCAR_017327' => 'dca', 'DCAR_020743' => 'dca', 'DCAR_026157' => 'dca', 'DCAR_032339' => 'dca', 'DCAR_032340' => 'dca', 'Dinv11200' => 'din', 'Dinv11201' => 'din', 'Dinv20631' => 'din', 'Dinv23182' => 'din', 'Dinv33466' => 'din', 'Dinv33583' => 'din', 'Dinv38565' => 'din', 'Duzib068G0200' => 'dzi', 'Duzib147G0132' => 'dzi', 'Duzib147G0635' => 'dzi', 'Duzib205G1670' => 'dzi', 'Duzib251G0606' => 'dzi', 'ECA232G3336' => 'eca', 'ECA232G3763' => 'eca', 'ECA232G4845' => 'eca', 'ECA234G1607' => 'eca', 'ECA246G0932' => 'eca', 'ECA247G0781' => 'eca', 'ECA247G1932' => 'eca', 'ECA247G2079' => 'eca', 'ECA247G3338' => 'eca', 'ECA247G4115' => 'eca', 'EL10Ac3g06552' => 'bvu', 'EL10Ac5g10721' => 'bvu', 'EL10Ac5g10722' => 'bvu', 'EL10Ac5g10723' => 'bvu', 'EL10Ac5g11361' => 'bvu', 'EL10Ac6g13553' => 'bvu', 'EL10As8g23872' => 'bvu', 'Eucgr.B00250' => 'egr', 'Eucgr.B00251' => 'egr', 'Eucgr.B03533' => 'egr', 'Eucgr.I02381' => 'egr', 'Eucgr.K02700' => 'egr', 'FAN02G0174' => 'fan', 'FAN02G3146' => 'fan', 'FAN04G1672' => 'fan', 'FAN04G2273' => 'fan', 'FAN05G2791' => 'fan', 'FAN05G4035' => 'fan', 'FAN07G0834' => 'fan', 'FAN08G1198' => 'fan', 'FAN09G4182' => 'fan', 'FAN12G0496' => 'fan', 'FAN13G1027' => 'fan', 'FAN13G2951' => 'fan', 'FAN14G0705' => 'fan', 'FAN14G0720' => 'fan', 'FAN17G0201' => 'fan', 'FAN17G2665' => 'fan', 'FAN18G1456' => 'fan', 'FAN18G1525' => 'fan', 'FAN18G3500' => 'fan', 'FAN28G2670' => 'fan', 'FvH4_1g12391' => 'fve', 'FvH4_4g23220' => 'fve', 'FvH4_5g08810' => 'fve', 'FvH4_5g28960' => 'fve', 'FvH4_6g42820' => 'fve', 'FvH4_6g51110' => 'fve', 'Glyma.02G051802' => 'gma', 'Glyma.04G185300' => 'gma', 'Glyma.05G202900' => 'gma', 'Glyma.08G010300' => 'gma', 'Glyma.16G131900' => 'gma', 'Glyma.17G087900' => 'gma', 'Gohir.A07G048600' => 'ghi', 'Gohir.A11G179000' => 'ghi', 'Gohir.A12G140900' => 'ghi', 'Gohir.A12G140950' => 'ghi', 'Gohir.A12G191700' => 'ghi', 'Gohir.A13G086300' => 'ghi', 'Gohir.D07G052900' => 'ghi', 'Gohir.D11G186600' => 'ghi', 'Gohir.D12G145575' => 'ghi', 'Gohir.D12G145650' => 'ghi', 'Gohir.D12G145725' => 'ghi', 'Gohir.D12G194050' => 'ghi', 'Gohir.D13G091800' => 'ghi', 'Gorai.001G055900' => 'gra', 'Gorai.007G198400' => 'gra', 'Gorai.008G157000' => 'gra', 'Gorai.008G157100' => 'gra', 'Gorai.008G208700' => 'gra', 'Gorai.010G138700' => 'gra', 'GSVIVG01000977001' => 'vvi', 'GSVIVG01007708001' => 'vvi', 'GSVIVG01008587001' => 'vvi', 'GSVIVG01018849001' => 'vvi', 'GSVIVG01032432001' => 'vvi', 'HanXRQChr02g0034131' => 'han', 'HanXRQChr02g0035981' => 'han', 'HanXRQChr02g0035991' => 'han', 'HanXRQChr05g0155611' => 'han', 'HanXRQChr05g0155621' => 'han', 'HanXRQChr08g0236501' => 'han', 'HanXRQChr09g0261321' => 'han', 'HanXRQChr09g0272081' => 'han', 'HanXRQChr10g0310741' => 'han', 'HanXRQChr11g0325591' => 'han', 'HanXRQChr12g0385691' => 'han', 'HanXRQChr13g0387801' => 'han', 'HanXRQChr15g0463011' => 'han', 'Haze_03826' => 'cav', 'Haze_03827' => 'cav', 'Haze_07183' => 'cav', 'Haze_07537' => 'cav', 'Haze_07539' => 'cav', 'Haze_12461' => 'cav', 'Haze_16115' => 'cav', 'Haze_16808' => 'cav', 'Haze_18531' => 'cav', 'Hma1.2p1_0046F.1_g026700' => 'hma', 'Hma1.2p1_0046F.1_g026710' => 'hma', 'Hma1.2p1_0168F.1_g074340' => 'hma', 'Hma1.2p1_0266F.1_g107030' => 'hma', 'Hma1.2p1_0266F.1_g107060' => 'hma', 'Hma1.2p1_0275F.1_g110510' => 'hma', 'Hma1.2p1_0592F.1_g185490' => 'hma', 'Hma1.2p1_0592F.1_g185500' => 'hma', 'Hma1.2p1_0592F.1_g185510' => 'hma', 'Hma1.2p1_0592F.1_g185520' => 'hma', 'Hma1.2p1_0592F.1_g185530' => 'hma', 'Hma1.2p1_0818F.1_g223450' => 'hma', 'HPP92_009708' => 'vpl', 'HPP92_009793' => 'vpl', 'HPP92_009796' => 'vpl', 'HPP92_009797' => 'vpl', 'HPP92_014940' => 'vpl', 'HPP92_014988' => 'vpl', 'Hund02463' => 'sun', 'Hund02760' => 'sun', 'Hund05071' => 'sun', 'Hund10108' => 'sun', 'Hund11204' => 'sun', 'Hund14016' => 'sun', 'Hund16464' => 'sun', 'Lalb_Chr09g0333391' => 'lal', 'Lalb_Chr11g0070461' => 'lal', 'Lalb_Chr12g0201671' => 'lal', 'Lalb_Chr13g0297161' => 'lal', 'Lj1g0002823' => 'lja', 'Lj3C1074T6' => 'lonja', 'Lj4A212T28' => 'lonja', 'Lj4g0005516' => 'lja', 'Lj4g0013705' => 'lja', 'Lj4g0027865' => 'lja', 'Lj5C92G16' => 'lonja', 'Lj5C92T12' => 'lonja', 'Lj7C596T3' => 'lonja', 'Lj9A446G59' => 'lonja', 'Lj9A482G21' => 'lonja', 'Lsat_1_v5_gn_1_28261' => 'lsa', 'Lsat_1_v5_gn_1_28281' => 'lsa', 'Lsat_1_v5_gn_1_32721' => 'lsa', 'Lsat_1_v5_gn_4_151760' => 'lsa', 'Lsat_1_v5_gn_4_2120' => 'lsa', 'Lsat_1_v5_gn_4_75761' => 'lsa', 'Lsat_1_v5_gn_5_10920' => 'lsa', 'Manes.02G099900' => 'mes', 'Manes.11G096200' => 'mes', 'Manes.12G007200' => 'mes', 'Manes.14G048300' => 'mes', 'Manes.17G114700' => 'mes', 'Mapoly0002s0070' => 'mpo', 'Mapoly0029s0099' => 'mpo', 'MBI07_g24742_MAGBIO' => 'mbi', 'MBI10_g27988_MAGBIO' => 'mbi', 'MBI11_g13057_MAGBIO' => 'mbi', 'MD02G1137200' => 'mdo', 'MD06G1137200' => 'mdo', 'MD07G1122300' => 'mdo', 'MD09G1078200' => 'mdo', 'MD13G1123700' => 'mdo', 'MD14G1151900' => 'mdo', 'MD17G1030900' => 'mdo', 'MD17G1068200' => 'mdo', 'MD17G1068600' => 'mdo', 'Medtr3g077540' => 'mtr', 'Medtr4g105530' => 'mtr', 'Medtr8g076580' => 'mtr', 'Medtr8g076590' => 'mtr', 'Medtr8g096410' => 'mtr', 'MELO3C016411.2' => 'cme', 'MELO3C017780.2' => 'cme', 'MELO3C022560.2' => 'cme', 'MELO3C026187.2' => 'cme', 'MELO3C026286.2' => 'cme', 'MELO3C032854.2' => 'cme', 'Migut.H02495' => 'egut', 'Migut.I00561' => 'egut', 'Migut.K01015' => 'egut', 'Migut.K01016' => 'egut', 'Migut.L00743' => 'egut', 'Migut.L00744' => 'egut', 'Migut.L00746' => 'egut', 'Migut.L00798' => 'egut', 'Migut.L00799' => 'egut', 'Migut.N02096' => 'egut', 'MSTRG.11259' => 'ama', 'MSTRG.23142' => 'ama', 'MSTRG.2499' => 'ama', 'Nitab4.5_0000003g0730' => 'nta', 'Nitab4.5_0000137g0020' => 'nta', 'Nitab4.5_0000721g0210' => 'nta', 'Nitab4.5_0000723g0050' => 'nta', 'Nitab4.5_0000913g0070' => 'nta', 'Nitab4.5_0001332g0040' => 'nta', 'Nitab4.5_0001771g0050' => 'nta', 'Nitab4.5_0001918g0050' => 'nta', 'Nitab4.5_0002686g0030' => 'nta', 'Nitab4.5_0003156g0020' => 'nta', 'Nitab4.5_0003383g0040' => 'nta', 'Nitab4.5_0003918g0010' => 'nta', 'Nitab4.5_0006760g0010' => 'nta', 'Nn1g05981' => 'nnu', 'Nn1g06288' => 'nnu', 'Nn3g16371' => 'nnu', 'Nn3g16786' => 'nnu', 'Nn4g22232' => 'nnu', 'Oeu005144.1' => 'oeu', 'Oeu005145.1' => 'oeu', 'Oeu011348.1' => 'oeu', 'Oeu016415.1' => 'oeu', 'Oeu023501.1' => 'oeu', 'Oeu044473.1' => 'oeu', 'Oeu048892.2' => 'oeu', 'Os01g0549200' => 'osa', 'Os02g0469300' => 'osa', 'Os04g0311100' => 'osa', 'Os06g0474900' => 'osa', 'Os10g0181700' => 'osa', 'Os11g0454800' => 'osa', 'Peaxi162Scf00037g00714' => 'pax', 'Peaxi162Scf00084g01217' => 'pax', 'Peaxi162Scf00257g00217' => 'pax', 'Peaxi162Scf00516g00215' => 'pax', 'Peaxi162Scf00689g00123' => 'pax', 'PGR044G2719' => 'pgr', 'PGR083G1360' => 'pgr', 'PGR102G2849' => 'pgr', 'PGR119G2534' => 'pgr', 'PGSC0003DMG400003538' => 'stu', 'PGSC0003DMG400028138' => 'stu', 'PGSC0003DMG400031732' => 'stu', 'PGSC0003DMG400038165' => 'stu', 'Phvul.002G284600' => 'pvu', 'Phvul.003G258200' => 'pvu', 'Phvul.009G176500' => 'pvu', 'Potri.003G167201' => 'ptr', 'Potri.005G118400' => 'ptr', 'Potri.012G089000' => 'ptr', 'Potri.012G102800' => 'ptr', 'Potri.015G079400' => 'ptr', 'Potri.015G100900' => 'ptr', 'Pp3c14_9810' => 'ppa', 'Pp3c15_10450' => 'ppa', 'Pp3c20_19150' => 'ppa', 'Pp3c23_12740' => 'ppa', 'Pp3c23_6310' => 'ppa', 'Pp3c24_3720' => 'ppa', 'Pp3c27_2580' => 'ppa', 'Pp3c9_8990' => 'ppa', 'PRCOL_00002854' => 'pco', 'Prupe.1G221200' => 'ppe', 'Prupe.3G289000' => 'ppe', 'Prupe.5G147000' => 'ppe', 'Prupe.6G157300' => 'ppe', 'Prupe.7G163400' => 'ppe', 'Psat0s2177g0040' => 'psa', 'Psat3g174760' => 'psa', 'Psat3g192160' => 'psa', 'Psat4g058520' => 'psa', 'Psat4g096840' => 'psa', 'Psat7g037320' => 'psa', 'PSO017G1274' => 'pso', 'PSO017G5166' => 'pso', 'PSO063G4558' => 'pso', 'PSO170G4458' => 'pso', 'PSO170G5005' => 'pso', 'PSO210G6156' => 'pso', 'PSO210G6635' => 'pso', 'PSO210G7397' => 'pso', 'PSO210G7700' => 'pso', 'PSO455G0035' => 'pso', 'PSO455G0180' => 'pso', 'PSO478G4515' => 'pso', 'PSO832G1305' => 'pso', 'PSO832G3489' => 'pso', 'QL02p075247' => 'qlo', 'QL03p051148' => 'qlo', 'QL05p010313' => 'qlo', 'QL06p034627' => 'qlo', 'QL10p001889' => 'qlo', 'QL10p010846' => 'qlo', 'RcHm_v2.0_Chr1g0350621' => 'rch', 'RcHm_v2.0_Chr1g0350641' => 'rch', 'RcHm_v2.0_Chr2g0092891' => 'rch', 'RcHm_v2.0_Chr2g0100251' => 'rch', 'RcHm_v2.0_Chr2g0158661' => 'rch', 'RcHm_v2.0_Chr2g0172741' => 'rch', 'RcHm_v2.0_Chr4g0429571' => 'rch', 'RcHm_v2.0_Chr5g0042471' => 'rch', 'RcHm_v2.0_Chr7g0189451' => 'rch', 'Rhsim08G0052000' => 'rsi', 'Rhsim08G0174400' => 'rsi', 'Rhsim08G0193200' => 'rsi', 'Rhsim10G0214800' => 'rsi', 'Rhsim10G0214900' => 'rsi', 'Rhsim10G0215000' => 'rsi', 'Rhsim12G0022900' => 'rsi', 'Rhsim12G0177500' => 'rsi', 'Rhsim12G0177700' => 'rsi', 'Sabra03G0122600' => 'sbr', 'Sabra05G0097400' => 'sbr', 'Sabra12G0064100' => 'sbr', 'Sabra15G0121300' => 'sbr', 'SalBow2G0642' => 'sbo', 'SalBow5G2667' => 'sbo', 'SalBow5G4873' => 'sbo', 'SalBow8G2395' => 'sbo', 'Sc03g0003290' => 'sci', 'Sc10g0010130' => 'sci', 'Sc22g0003650' => 'sci', 'Sed0001603' => 'sed', 'Sed0004259' => 'sed', 'Sed0006789' => 'sed', 'Sed0011838' => 'sed', 'Sed0012964' => 'sed', 'Sed0016383' => 'sed', 'Sed0019010' => 'sed', 'Sed0020188' => 'sed', 'SEGI_04702' => 'sgi', 'SEGI_17231' => 'sgi', 'SEGI_18877' => 'sgi', 'SEGI_25196' => 'sgi', 'SEGI_25515' => 'sgi', 'SEGI_28445' => 'sgi', 'SEGI_37452' => 'sgi', 'SGA_v2.0_scaffold188G40336' => 'sas', 'SGA_v2.0_scaffold228G43247' => 'sas', 'SGA_v2.0_scaffold280G46853' => 'sas', 'SGA_v2.0_scaffold34G13808' => 'sas', 'SGA_v2.0_scaffold40G15576' => 'sas', 'SGA_v2.0_scaffold611G53188' => 'sas', 'SGA_v2.0_scaffold78G25461' => 'sas', 'SGA_v2.0_scaffold90G27888' => 'sas', 'SHI08601' => 'shi', 'SHI08606' => 'shi', 'SHI17117' => 'shi', 'SHI17119' => 'shi', 'SMO118G0201' => 'smo', 'SMO169G0247' => 'smo', 'SMO176G0006' => 'smo', 'SMO176G0015' => 'smo', 'SMO202G0006' => 'smo', 'SMO240G0050' => 'smo', 'SMO286G0009' => 'smo', 'SMO338G0033' => 'smo', 'SMO356G0533' => 'smo', 'SMO364G0382' => 'smo', 'SMO367G0166' => 'smo', 'SMO367G1098' => 'smo', 'Solyc01g009920.3' => 'sly', 'Solyc01g099300.3' => 'sly', 'Solyc02g084700.3' => 'sly', 'Solyc03g097520.3' => 'sly', 'Solyc06g071580.3' => 'sly', 'Solyc10g081760.3' => 'sly', 'Sopen01g005480' => 'spe', 'Sopen01g042850' => 'spe', 'Sopen02g029370' => 'spe', 'Sopen03g028280' => 'spe', 'Sopen06g027870' => 'spe', 'Sopen10g032270' => 'spe', 'Sp5g18180' => 'spa', 'Sp6g12880' => 'spa', 'Sp6g30850' => 'spa', 'Sp7g22960' => 'spa', 'Sp7g34010' => 'spa', 'SpUn1326_0010' => 'spa', 'TAR371G0242' => 'tar', 'TAR622G0638' => 'tar', 'TAR628G1548' => 'tar', 'TAR629G1079' => 'tar', 'TAR629G3413' => 'tar', 'THA.LOC104804249' => 'tha', 'THA.LOC104808315' => 'tha', 'THA.LOC104809238' => 'tha', 'THA.LOC104825484' => 'tha', 'Thecc.01G025500' => 'tca', 'Thecc.03G015800' => 'tca', 'Thecc.03G018000' => 'tca', 'Thecc.03G134800' => 'tca', 'Thecc.04G014700' => 'tca', 'Thhalv10006991m.g' => 'esa', 'Thhalv10012707m.g' => 'esa', 'Thhalv10015739m.g' => 'esa', 'Thhalv10024553m.g' => 'esa', 'Thhalv10024673m.g' => 'esa', 'Thhalv10029187m.g' => 'esa', 'TPR.G12971' => 'tpr', 'TPR.G29396' => 'tpr', 'TPR.G33376' => 'tpr', 'TPR.G35508' => 'tpr', 'TPR.G35516' => 'tpr', 'TPR.G37317' => 'tpr', 'TPR.G37389' => 'tpr', 'TPR.G37523' => 'tpr', 'TPR.G559' => 'tpr', 'TWI14G0070' => 'twi', 'TWI14G0729' => 'twi', 'TWI18G0596' => 'twi', 'TWI39G0780' => 'twi', 'TWI39G0850' => 'twi', 'TWI73G1052' => 'twi', 'unitig_52.g17485' => 'ugi', 'unitig_61.g26355' => 'ugi', 'vmacro01040' => 'vma', 'vmacro16731' => 'vma', 'vmacro18270' => 'vma', 'vmacro19142' => 'vma', 'vmacro19407' => 'vma', 'vmacro19408' => 'vma', 'vmacro21899' => 'vma', 'vmacro21900' => 'vma', 'vmacro21901' => 'vma', 'VMungo0251G0490' => 'vmu', 'VMungo0251G1748' => 'vmu', 'VMungo1309G0421' => 'vmu', 'Zm00001eb086500' => 'zma', 'Zm00001eb150680' => 'zma', 'Zm00001eb162330' => 'zma', 'Zm00001eb203130' => 'zma', 'Zm00001eb369480' => 'zma', 'Zm00001eb382340' => 'zma', 'Zm00001eb416360' => 'zma' ) $gf_id = 'HOM05D000902' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000902' ) $data_identifier = 'HOM05D000902' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 13, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 10, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 6, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 9, 'hma' => (int) 12, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 4, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 6, 'ppa' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 6, 'rch' => (int) 9, 'rsi' => (int) 9, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 12, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 3, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416360' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000902', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '663', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02470' => 'bna', 'A01p16260' => 'bna', 'A02p01680' => 'bna', 'A03p16600' => 'bna', 'A03p55660' => 'bna', 'A03p64160' => 'bna', 'A03p64170' => 'bna', 'A08p31900' => 'bna', 'A09p59530' => 'bna', 'A10p08230' => 'bna', 'A10p25090' => 'bna', 'Aa31LG3G7100' => 'aar', 'Aa31LG3G7110' => 'aar', 'Aa31LG6G13160' => 'aar', 'Aa31LG7G10770' => 'aar', 'Aa31LG7G3830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2723' => 'aag', 'Actinidia08045' => 'ach', 'Actinidia08888' => 'ach', 'Actinidia18333' => 'ach', 'Actinidia19334' => 'ach', 'Actinidia25552' => 'ach', 'Actinidia26089' => 'ach', 'Actinidia30615' => 'ach', 'Actinidia30616' => 'ach', 'Actinidia33083' => 'ach', 'Actinidia35762' => 'ach', 'Ah.02g110620' => 'amhyb', 'Ah.11g046390' => 'amhyb', 'AL1G31670' => 'aly', 'AL6G23730' => 'aly', 'AL7G14740' => 'aly', 'AL7G14750' => 'aly', 'AL7G14760' => 'aly', 'AL7G28220' => 'aly', 'AL8G24940' => 'aly', 'Aqoxy3G01665' => 'aox', 'Aqoxy3G02853' => 'aox', 'Aqoxy5G01513' => 'aox', 'Aqoxy5G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8SKA4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ75LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKDA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0LJZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7REX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZP4YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWX7I5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2QKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS0L9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPCD8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q161UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC7XCF' => 'arhy', 'AT1G19100' => 'ath', 'AT4G24970' => 'ath', 'AT4G36270' => 'ath', 'AT4G36280' => 'ath', 'AT4G36290' => 'ath', 'AT5G13130' => 'ath', 'AT5G50780' => 'ath', 'ATR0582G266' => 'atr', 'ATR0661G195' => 'atr', 'ATR1152G031' => 'atr', 'Atru.chr11.2382' => 'acertr', 'Atru.chr12.2337' => 'acertr', 'Atru.chr3.744' => 'acertr', 'Atru.chr6.1870' => 'acertr', 'Atru.chr9.2515' => 'acertr', 'AUR62004120' => 'cqu', 'AUR62005667' => 'cqu', 'AUR62007634' => 'cqu', 'AUR62008186' => 'cqu', 'AUR62008187' => 'cqu', 'AUR62008188' => 'cqu', 'AUR62027954' => 'cqu', 'AUR62028766' => 'cqu', 'AUR62028767' => 'cqu', 'AUR62028768' => 'cqu', 'AUR62028886' => 'cqu', 'AUR62029563' => 'cqu', 'AUR62038832' => 'cqu', 'BcaB01g04149' => 'bca', 'BcaB03g12940' => 'bca', 'BcaB03g13090' => 'bca', 'BcaB03g14466' => 'bca', 'BcaB05g24035' => 'bca', 'BcaC01g06050' => 'bca', 'BcaC04g19148' => 'bca', 'BcaC04g20761' => 'bca', 'BcaC06g32845' => 'bca', 'BcaC07g41274' => 'bca', 'BcaC09g50827' => 'bca', 'BcaNung00741' => 'bca', 'BcaNung00742' => 'bca', 'BcaNung01859' => 'bca', 'BcaNung03985' => 'bca', 'BcaNung03989' => 'bca', 'BcaNung05661' => 'bca', 'BolC1t00257H' => 'bol', 'BolC1t01956H' => 'bol', 'BolC2t06534H' => 'bol', 'BolC3t14334H' => 'bol', 'BolC5t30451H' => 'bol', 'BolC7t45880H' => 'bol', 'BolC7t46586H' => 'bol', 'BolC8t49301H' => 'bol', 'BolC8t51837H' => 'bol', 'BolC9t56822H' => 'bol', 'BolC9t59235H' => 'bol', 'BraA01t00234Z' => 'bra', 'BraA01t01563Z' => 'bra', 'BraA02t05147Z' => 'bra', 'BraA03t10947Z' => 'bra', 'BraA03t14633Z' => 'bra', 'BraA08t35112Z' => 'bra', 'BraA09t41330Z' => 'bra', 'BraA10t44570Z' => 'bra', 'C01p02670' => 'bna', 'C01p20260' => 'bna', 'C02p05890' => 'bna', 'C03p19530' => 'bna', 'C05p17470' => 'bna', 'C07p53900' => 'bna', 'C07p61630' => 'bna', 'C08p16800' => 'bna', 'C08p42810' => 'bna', 'C09p39480' => 'bna', 'C09p63980' => 'bna', 'CAN.G1001.7' => 'can', 'CAN.G1034.55' => 'can', 'CAN.G143.7' => 'can', 'CAN.G3340.1' => 'can', 'CAN.G358.19' => 'can', 'CAN.G373.2' => 'can', 'CAN.G674.16' => 'can', 'CAN.G674.17' => 'can', 'CAN.G674.18' => 'can', 'CAN.G732.2' => 'can', 'CAN.G732.3' => 'can', 'CAN.G993.39' => 'can', 'CANSAT01G2052' => 'cansat', 'CANSAT80G0070' => 'cansat', 'CANSAT80G0483' => 'cansat', 'CANSAT80G0625' => 'cansat', 'CARHR019690' => 'chi', 'CARHR080280' => 'chi', 'CARHR152750' => 'chi', 'CARHR152760' => 'chi', 'CARHR152770' => 'chi', 'CARHR200340' => 'chi', 'CARHR232370' => 'chi', 'CARHR244670' => 'chi', 'CARHR244680' => 'chi', 'CARHR257520' => 'chi', 'Carub.0001s1872' => 'cru', 'Carub.0006s1130' => 'cru', 'Carub.0007s0396' => 'cru', 'Carub.0007s0397' => 'cru', 'Carub.0007s1608' => 'cru', 'Carub.0008s1068' => 'cru', 'Carub.0008s1077' => 'cru', 'Ca_16158_v3' => 'car', 'Ca_17571_v3' => 'car', 'Ca_21936_v3' => 'car', 'Ca_22350_v3' => 'car', 'CBR_g22445' => 'cbr', 'CBR_g26290' => 'cbr', 'Cc04_g09610' => 'ccan', 'Cc04_g12280' => 'ccan', 'Cc07_g10230' => 'ccan', 'CDE02G0093' => 'cde', 'CDE02G0701' => 'cde', 'CDE04G1050' => 'cde', 'CDE05G1833' => 'cde', 'CDE05G3058' => 'cde', 'CDE05G3380' => 'cde', 'CDE06G0536' => 'cde', 'Cfa006923' => 'cfa', 'Cfa009402' => 'cfa', 'Cfa018751' => 'cfa', 'Cfa019164' => 'cfa', 'Cfa022935' => 'cfa', 'Ciclev10019081m.g' => 'ccl', 'Ciclev10025076m.g' => 'ccl', 'Ciclev10030712m.g' => 'ccl', 'Ciclev10033760m.g' => 'ccl', 'CiPaw.05G105600' => 'cil', 'CiPaw.08G136700' => 'cil', 'CiPaw.11G003900' => 'cil', 'CiPaw.11G023700' => 'cil', 'CiPaw.12G003700' => 'cil', 'ClCG06G017100' => 'cla', 'ClCG06G018110' => 'cla', 'ClCG07G008800' => 'cla', 'ClCG07G015330' => 'cla', 'COL.COLO4_13698' => 'col', 'COL.COLO4_16659' => 'col', 'COL.COLO4_21986' => 'col', 'COL.COLO4_24049' => 'col', 'COL.COLO4_29061' => 'col', 'COL.COLO4_29075' => 'col', 'COL.COLO4_30094' => 'col', 'Cpa.g.c33689' => 'cpa', 'Cpa.g.sc108.39' => 'cpa', 'Cpa.g.sc108.41' => 'cpa', 'Cpa.g.sc1163.1' => 'cpa', 'Cpa.g.sc4.155' => 'cpa', 'Cpa.g.sc6.194' => 'cpa', 'CsaV3_1G000340' => 'csa', 'CsaV3_1G001400' => 'csa', 'CsaV3_4G002220' => 'csa', 'CsaV3_4G005370' => 'csa', 'CSS0007487' => 'camsi', 'CSS0008066' => 'camsi', 'CSS0009120' => 'camsi', 'CSS0015512' => 'camsi', 'CSS0022409' => 'camsi', 'CSS0025358' => 'camsi', 'CSS0044547' => 'camsi', 'DCAR_013057' => 'dca', 'DCAR_015058' => 'dca', 'DCAR_016027' => 'dca', 'DCAR_017327' => 'dca', 'DCAR_020743' => 'dca', 'DCAR_026157' => 'dca', 'DCAR_032339' => 'dca', 'DCAR_032340' => 'dca', 'Dinv11200' => 'din', 'Dinv11201' => 'din', 'Dinv20631' => 'din', 'Dinv23182' => 'din', 'Dinv33466' => 'din', 'Dinv33583' => 'din', 'Dinv38565' => 'din', 'Duzib068G0200' => 'dzi', 'Duzib147G0132' => 'dzi', 'Duzib147G0635' => 'dzi', 'Duzib205G1670' => 'dzi', 'Duzib251G0606' => 'dzi', 'ECA232G3336' => 'eca', 'ECA232G3763' => 'eca', 'ECA232G4845' => 'eca', 'ECA234G1607' => 'eca', 'ECA246G0932' => 'eca', 'ECA247G0781' => 'eca', 'ECA247G1932' => 'eca', 'ECA247G2079' => 'eca', 'ECA247G3338' => 'eca', 'ECA247G4115' => 'eca', 'EL10Ac3g06552' => 'bvu', 'EL10Ac5g10721' => 'bvu', 'EL10Ac5g10722' => 'bvu', 'EL10Ac5g10723' => 'bvu', 'EL10Ac5g11361' => 'bvu', 'EL10Ac6g13553' => 'bvu', 'EL10As8g23872' => 'bvu', 'Eucgr.B00250' => 'egr', 'Eucgr.B00251' => 'egr', 'Eucgr.B03533' => 'egr', 'Eucgr.I02381' => 'egr', 'Eucgr.K02700' => 'egr', 'FAN02G0174' => 'fan', 'FAN02G3146' => 'fan', 'FAN04G1672' => 'fan', 'FAN04G2273' => 'fan', 'FAN05G2791' => 'fan', 'FAN05G4035' => 'fan', 'FAN07G0834' => 'fan', 'FAN08G1198' => 'fan', 'FAN09G4182' => 'fan', 'FAN12G0496' => 'fan', 'FAN13G1027' => 'fan', 'FAN13G2951' => 'fan', 'FAN14G0705' => 'fan', 'FAN14G0720' => 'fan', 'FAN17G0201' => 'fan', 'FAN17G2665' => 'fan', 'FAN18G1456' => 'fan', 'FAN18G1525' => 'fan', 'FAN18G3500' => 'fan', 'FAN28G2670' => 'fan', 'FvH4_1g12391' => 'fve', 'FvH4_4g23220' => 'fve', 'FvH4_5g08810' => 'fve', 'FvH4_5g28960' => 'fve', 'FvH4_6g42820' => 'fve', 'FvH4_6g51110' => 'fve', 'Glyma.02G051802' => 'gma', 'Glyma.04G185300' => 'gma', 'Glyma.05G202900' => 'gma', 'Glyma.08G010300' => 'gma', 'Glyma.16G131900' => 'gma', 'Glyma.17G087900' => 'gma', 'Gohir.A07G048600' => 'ghi', 'Gohir.A11G179000' => 'ghi', 'Gohir.A12G140900' => 'ghi', 'Gohir.A12G140950' => 'ghi', 'Gohir.A12G191700' => 'ghi', 'Gohir.A13G086300' => 'ghi', 'Gohir.D07G052900' => 'ghi', 'Gohir.D11G186600' => 'ghi', 'Gohir.D12G145575' => 'ghi', 'Gohir.D12G145650' => 'ghi', 'Gohir.D12G145725' => 'ghi', 'Gohir.D12G194050' => 'ghi', 'Gohir.D13G091800' => 'ghi', 'Gorai.001G055900' => 'gra', 'Gorai.007G198400' => 'gra', 'Gorai.008G157000' => 'gra', 'Gorai.008G157100' => 'gra', 'Gorai.008G208700' => 'gra', 'Gorai.010G138700' => 'gra', 'GSVIVG01000977001' => 'vvi', 'GSVIVG01007708001' => 'vvi', 'GSVIVG01008587001' => 'vvi', 'GSVIVG01018849001' => 'vvi', 'GSVIVG01032432001' => 'vvi', 'HanXRQChr02g0034131' => 'han', 'HanXRQChr02g0035981' => 'han', 'HanXRQChr02g0035991' => 'han', 'HanXRQChr05g0155611' => 'han', 'HanXRQChr05g0155621' => 'han', 'HanXRQChr08g0236501' => 'han', 'HanXRQChr09g0261321' => 'han', 'HanXRQChr09g0272081' => 'han', 'HanXRQChr10g0310741' => 'han', 'HanXRQChr11g0325591' => 'han', 'HanXRQChr12g0385691' => 'han', 'HanXRQChr13g0387801' => 'han', 'HanXRQChr15g0463011' => 'han', 'Haze_03826' => 'cav', 'Haze_03827' => 'cav', 'Haze_07183' => 'cav', 'Haze_07537' => 'cav', 'Haze_07539' => 'cav', 'Haze_12461' => 'cav', 'Haze_16115' => 'cav', 'Haze_16808' => 'cav', 'Haze_18531' => 'cav', 'Hma1.2p1_0046F.1_g026700' => 'hma', 'Hma1.2p1_0046F.1_g026710' => 'hma', 'Hma1.2p1_0168F.1_g074340' => 'hma', 'Hma1.2p1_0266F.1_g107030' => 'hma', 'Hma1.2p1_0266F.1_g107060' => 'hma', 'Hma1.2p1_0275F.1_g110510' => 'hma', 'Hma1.2p1_0592F.1_g185490' => 'hma', 'Hma1.2p1_0592F.1_g185500' => 'hma', 'Hma1.2p1_0592F.1_g185510' => 'hma', 'Hma1.2p1_0592F.1_g185520' => 'hma', 'Hma1.2p1_0592F.1_g185530' => 'hma', 'Hma1.2p1_0818F.1_g223450' => 'hma', 'HPP92_009708' => 'vpl', 'HPP92_009793' => 'vpl', 'HPP92_009796' => 'vpl', 'HPP92_009797' => 'vpl', 'HPP92_014940' => 'vpl', 'HPP92_014988' => 'vpl', 'Hund02463' => 'sun', 'Hund02760' => 'sun', 'Hund05071' => 'sun', 'Hund10108' => 'sun', 'Hund11204' => 'sun', 'Hund14016' => 'sun', 'Hund16464' => 'sun', 'Lalb_Chr09g0333391' => 'lal', 'Lalb_Chr11g0070461' => 'lal', 'Lalb_Chr12g0201671' => 'lal', 'Lalb_Chr13g0297161' => 'lal', 'Lj1g0002823' => 'lja', 'Lj3C1074T6' => 'lonja', 'Lj4A212T28' => 'lonja', 'Lj4g0005516' => 'lja', 'Lj4g0013705' => 'lja', 'Lj4g0027865' => 'lja', 'Lj5C92G16' => 'lonja', 'Lj5C92T12' => 'lonja', 'Lj7C596T3' => 'lonja', 'Lj9A446G59' => 'lonja', 'Lj9A482G21' => 'lonja', 'Lsat_1_v5_gn_1_28261' => 'lsa', 'Lsat_1_v5_gn_1_28281' => 'lsa', 'Lsat_1_v5_gn_1_32721' => 'lsa', 'Lsat_1_v5_gn_4_151760' => 'lsa', 'Lsat_1_v5_gn_4_2120' => 'lsa', 'Lsat_1_v5_gn_4_75761' => 'lsa', 'Lsat_1_v5_gn_5_10920' => 'lsa', 'Manes.02G099900' => 'mes', 'Manes.11G096200' => 'mes', 'Manes.12G007200' => 'mes', 'Manes.14G048300' => 'mes', 'Manes.17G114700' => 'mes', 'Mapoly0002s0070' => 'mpo', 'Mapoly0029s0099' => 'mpo', 'MBI07_g24742_MAGBIO' => 'mbi', 'MBI10_g27988_MAGBIO' => 'mbi', 'MBI11_g13057_MAGBIO' => 'mbi', 'MD02G1137200' => 'mdo', 'MD06G1137200' => 'mdo', 'MD07G1122300' => 'mdo', 'MD09G1078200' => 'mdo', 'MD13G1123700' => 'mdo', 'MD14G1151900' => 'mdo', 'MD17G1030900' => 'mdo', 'MD17G1068200' => 'mdo', 'MD17G1068600' => 'mdo', 'Medtr3g077540' => 'mtr', 'Medtr4g105530' => 'mtr', 'Medtr8g076580' => 'mtr', 'Medtr8g076590' => 'mtr', 'Medtr8g096410' => 'mtr', 'MELO3C016411.2' => 'cme', 'MELO3C017780.2' => 'cme', 'MELO3C022560.2' => 'cme', 'MELO3C026187.2' => 'cme', 'MELO3C026286.2' => 'cme', 'MELO3C032854.2' => 'cme', 'Migut.H02495' => 'egut', 'Migut.I00561' => 'egut', 'Migut.K01015' => 'egut', 'Migut.K01016' => 'egut', 'Migut.L00743' => 'egut', 'Migut.L00744' => 'egut', 'Migut.L00746' => 'egut', 'Migut.L00798' => 'egut', 'Migut.L00799' => 'egut', 'Migut.N02096' => 'egut', 'MSTRG.11259' => 'ama', 'MSTRG.23142' => 'ama', 'MSTRG.2499' => 'ama', 'Nitab4.5_0000003g0730' => 'nta', 'Nitab4.5_0000137g0020' => 'nta', 'Nitab4.5_0000721g0210' => 'nta', 'Nitab4.5_0000723g0050' => 'nta', 'Nitab4.5_0000913g0070' => 'nta', 'Nitab4.5_0001332g0040' => 'nta', 'Nitab4.5_0001771g0050' => 'nta', 'Nitab4.5_0001918g0050' => 'nta', 'Nitab4.5_0002686g0030' => 'nta', 'Nitab4.5_0003156g0020' => 'nta', 'Nitab4.5_0003383g0040' => 'nta', 'Nitab4.5_0003918g0010' => 'nta', 'Nitab4.5_0006760g0010' => 'nta', 'Nn1g05981' => 'nnu', 'Nn1g06288' => 'nnu', 'Nn3g16371' => 'nnu', 'Nn3g16786' => 'nnu', 'Nn4g22232' => 'nnu', 'Oeu005144.1' => 'oeu', 'Oeu005145.1' => 'oeu', 'Oeu011348.1' => 'oeu', 'Oeu016415.1' => 'oeu', 'Oeu023501.1' => 'oeu', 'Oeu044473.1' => 'oeu', 'Oeu048892.2' => 'oeu', 'Os01g0549200' => 'osa', 'Os02g0469300' => 'osa', 'Os04g0311100' => 'osa', 'Os06g0474900' => 'osa', 'Os10g0181700' => 'osa', 'Os11g0454800' => 'osa', 'Peaxi162Scf00037g00714' => 'pax', 'Peaxi162Scf00084g01217' => 'pax', 'Peaxi162Scf00257g00217' => 'pax', 'Peaxi162Scf00516g00215' => 'pax', 'Peaxi162Scf00689g00123' => 'pax', 'PGR044G2719' => 'pgr', 'PGR083G1360' => 'pgr', 'PGR102G2849' => 'pgr', 'PGR119G2534' => 'pgr', 'PGSC0003DMG400003538' => 'stu', 'PGSC0003DMG400028138' => 'stu', 'PGSC0003DMG400031732' => 'stu', 'PGSC0003DMG400038165' => 'stu', 'Phvul.002G284600' => 'pvu', 'Phvul.003G258200' => 'pvu', 'Phvul.009G176500' => 'pvu', 'Potri.003G167201' => 'ptr', 'Potri.005G118400' => 'ptr', 'Potri.012G089000' => 'ptr', 'Potri.012G102800' => 'ptr', 'Potri.015G079400' => 'ptr', 'Potri.015G100900' => 'ptr', 'Pp3c14_9810' => 'ppa', 'Pp3c15_10450' => 'ppa', 'Pp3c20_19150' => 'ppa', 'Pp3c23_12740' => 'ppa', 'Pp3c23_6310' => 'ppa', 'Pp3c24_3720' => 'ppa', 'Pp3c27_2580' => 'ppa', 'Pp3c9_8990' => 'ppa', 'PRCOL_00002854' => 'pco', 'Prupe.1G221200' => 'ppe', 'Prupe.3G289000' => 'ppe', 'Prupe.5G147000' => 'ppe', 'Prupe.6G157300' => 'ppe', 'Prupe.7G163400' => 'ppe', 'Psat0s2177g0040' => 'psa', 'Psat3g174760' => 'psa', 'Psat3g192160' => 'psa', 'Psat4g058520' => 'psa', 'Psat4g096840' => 'psa', 'Psat7g037320' => 'psa', 'PSO017G1274' => 'pso', 'PSO017G5166' => 'pso', 'PSO063G4558' => 'pso', 'PSO170G4458' => 'pso', 'PSO170G5005' => 'pso', 'PSO210G6156' => 'pso', 'PSO210G6635' => 'pso', 'PSO210G7397' => 'pso', 'PSO210G7700' => 'pso', 'PSO455G0035' => 'pso', 'PSO455G0180' => 'pso', 'PSO478G4515' => 'pso', 'PSO832G1305' => 'pso', 'PSO832G3489' => 'pso', 'QL02p075247' => 'qlo', 'QL03p051148' => 'qlo', 'QL05p010313' => 'qlo', 'QL06p034627' => 'qlo', 'QL10p001889' => 'qlo', 'QL10p010846' => 'qlo', 'RcHm_v2.0_Chr1g0350621' => 'rch', 'RcHm_v2.0_Chr1g0350641' => 'rch', 'RcHm_v2.0_Chr2g0092891' => 'rch', 'RcHm_v2.0_Chr2g0100251' => 'rch', 'RcHm_v2.0_Chr2g0158661' => 'rch', 'RcHm_v2.0_Chr2g0172741' => 'rch', 'RcHm_v2.0_Chr4g0429571' => 'rch', 'RcHm_v2.0_Chr5g0042471' => 'rch', 'RcHm_v2.0_Chr7g0189451' => 'rch', 'Rhsim08G0052000' => 'rsi', 'Rhsim08G0174400' => 'rsi', 'Rhsim08G0193200' => 'rsi', 'Rhsim10G0214800' => 'rsi', 'Rhsim10G0214900' => 'rsi', 'Rhsim10G0215000' => 'rsi', 'Rhsim12G0022900' => 'rsi', 'Rhsim12G0177500' => 'rsi', 'Rhsim12G0177700' => 'rsi', 'Sabra03G0122600' => 'sbr', 'Sabra05G0097400' => 'sbr', 'Sabra12G0064100' => 'sbr', 'Sabra15G0121300' => 'sbr', 'SalBow2G0642' => 'sbo', 'SalBow5G2667' => 'sbo', 'SalBow5G4873' => 'sbo', 'SalBow8G2395' => 'sbo', 'Sc03g0003290' => 'sci', 'Sc10g0010130' => 'sci', 'Sc22g0003650' => 'sci', 'Sed0001603' => 'sed', 'Sed0004259' => 'sed', 'Sed0006789' => 'sed', 'Sed0011838' => 'sed', 'Sed0012964' => 'sed', 'Sed0016383' => 'sed', 'Sed0019010' => 'sed', 'Sed0020188' => 'sed', 'SEGI_04702' => 'sgi', 'SEGI_17231' => 'sgi', 'SEGI_18877' => 'sgi', 'SEGI_25196' => 'sgi', 'SEGI_25515' => 'sgi', 'SEGI_28445' => 'sgi', 'SEGI_37452' => 'sgi', 'SGA_v2.0_scaffold188G40336' => 'sas', 'SGA_v2.0_scaffold228G43247' => 'sas', 'SGA_v2.0_scaffold280G46853' => 'sas', 'SGA_v2.0_scaffold34G13808' => 'sas', 'SGA_v2.0_scaffold40G15576' => 'sas', 'SGA_v2.0_scaffold611G53188' => 'sas', 'SGA_v2.0_scaffold78G25461' => 'sas', 'SGA_v2.0_scaffold90G27888' => 'sas', 'SHI08601' => 'shi', 'SHI08606' => 'shi', 'SHI17117' => 'shi', 'SHI17119' => 'shi', 'SMO118G0201' => 'smo', 'SMO169G0247' => 'smo', 'SMO176G0006' => 'smo', 'SMO176G0015' => 'smo', 'SMO202G0006' => 'smo', 'SMO240G0050' => 'smo', 'SMO286G0009' => 'smo', 'SMO338G0033' => 'smo', 'SMO356G0533' => 'smo', 'SMO364G0382' => 'smo', 'SMO367G0166' => 'smo', 'SMO367G1098' => 'smo', 'Solyc01g009920.3' => 'sly', 'Solyc01g099300.3' => 'sly', 'Solyc02g084700.3' => 'sly', 'Solyc03g097520.3' => 'sly', 'Solyc06g071580.3' => 'sly', 'Solyc10g081760.3' => 'sly', 'Sopen01g005480' => 'spe', 'Sopen01g042850' => 'spe', 'Sopen02g029370' => 'spe', 'Sopen03g028280' => 'spe', 'Sopen06g027870' => 'spe', 'Sopen10g032270' => 'spe', 'Sp5g18180' => 'spa', 'Sp6g12880' => 'spa', 'Sp6g30850' => 'spa', 'Sp7g22960' => 'spa', 'Sp7g34010' => 'spa', 'SpUn1326_0010' => 'spa', 'TAR371G0242' => 'tar', 'TAR622G0638' => 'tar', 'TAR628G1548' => 'tar', 'TAR629G1079' => 'tar', 'TAR629G3413' => 'tar', 'THA.LOC104804249' => 'tha', 'THA.LOC104808315' => 'tha', 'THA.LOC104809238' => 'tha', 'THA.LOC104825484' => 'tha', 'Thecc.01G025500' => 'tca', 'Thecc.03G015800' => 'tca', 'Thecc.03G018000' => 'tca', 'Thecc.03G134800' => 'tca', 'Thecc.04G014700' => 'tca', 'Thhalv10006991m.g' => 'esa', 'Thhalv10012707m.g' => 'esa', 'Thhalv10015739m.g' => 'esa', 'Thhalv10024553m.g' => 'esa', 'Thhalv10024673m.g' => 'esa', 'Thhalv10029187m.g' => 'esa', 'TPR.G12971' => 'tpr', 'TPR.G29396' => 'tpr', 'TPR.G33376' => 'tpr', 'TPR.G35508' => 'tpr', 'TPR.G35516' => 'tpr', 'TPR.G37317' => 'tpr', 'TPR.G37389' => 'tpr', 'TPR.G37523' => 'tpr', 'TPR.G559' => 'tpr', 'TWI14G0070' => 'twi', 'TWI14G0729' => 'twi', 'TWI18G0596' => 'twi', 'TWI39G0780' => 'twi', 'TWI39G0850' => 'twi', 'TWI73G1052' => 'twi', 'unitig_52.g17485' => 'ugi', 'unitig_61.g26355' => 'ugi', 'vmacro01040' => 'vma', 'vmacro16731' => 'vma', 'vmacro18270' => 'vma', 'vmacro19142' => 'vma', 'vmacro19407' => 'vma', 'vmacro19408' => 'vma', 'vmacro21899' => 'vma', 'vmacro21900' => 'vma', 'vmacro21901' => 'vma', 'VMungo0251G0490' => 'vmu', 'VMungo0251G1748' => 'vmu', 'VMungo1309G0421' => 'vmu', 'Zm00001eb086500' => 'zma', 'Zm00001eb150680' => 'zma', 'Zm00001eb162330' => 'zma', 'Zm00001eb203130' => 'zma', 'Zm00001eb369480' => 'zma', 'Zm00001eb382340' => 'zma', 'Zm00001eb416360' => 'zma' ), 'gf_id' => 'HOM05D000902', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000902' ), 'data_identifier' => 'HOM05D000902', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000902', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '663', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02470' => 'bna', 'A01p16260' => 'bna', 'A02p01680' => 'bna', 'A03p16600' => 'bna', 'A03p55660' => 'bna', 'A03p64160' => 'bna', 'A03p64170' => 'bna', 'A08p31900' => 'bna', 'A09p59530' => 'bna', 'A10p08230' => 'bna', 'A10p25090' => 'bna', 'Aa31LG3G7100' => 'aar', 'Aa31LG3G7110' => 'aar', 'Aa31LG6G13160' => 'aar', 'Aa31LG7G10770' => 'aar', 'Aa31LG7G3830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2723' => 'aag', 'Actinidia08045' => 'ach', 'Actinidia08888' => 'ach', 'Actinidia18333' => 'ach', 'Actinidia19334' => 'ach', 'Actinidia25552' => 'ach', 'Actinidia26089' => 'ach', 'Actinidia30615' => 'ach', 'Actinidia30616' => 'ach', 'Actinidia33083' => 'ach', 'Actinidia35762' => 'ach', 'Ah.02g110620' => 'amhyb', 'Ah.11g046390' => 'amhyb', 'AL1G31670' => 'aly', 'AL6G23730' => 'aly', 'AL7G14740' => 'aly', 'AL7G14750' => 'aly', 'AL7G14760' => 'aly', 'AL7G28220' => 'aly', 'AL8G24940' => 'aly', 'Aqoxy3G01665' => 'aox', 'Aqoxy3G02853' => 'aox', 'Aqoxy5G01513' => 'aox', 'Aqoxy5G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8SKA4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ75LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKDA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0LJZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7REX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZP4YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWX7I5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2QKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS0L9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPCD8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q161UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC7XCF' => 'arhy', 'AT1G19100' => 'ath', 'AT4G24970' => 'ath', 'AT4G36270' => 'ath', 'AT4G36280' => 'ath', 'AT4G36290' => 'ath', 'AT5G13130' => 'ath', 'AT5G50780' => 'ath', 'ATR0582G266' => 'atr', 'ATR0661G195' => 'atr', 'ATR1152G031' => 'atr', 'Atru.chr11.2382' => 'acertr', 'Atru.chr12.2337' => 'acertr', 'Atru.chr3.744' => 'acertr', 'Atru.chr6.1870' => 'acertr', 'Atru.chr9.2515' => 'acertr', 'AUR62004120' => 'cqu', 'AUR62005667' => 'cqu', 'AUR62007634' => 'cqu', 'AUR62008186' => 'cqu', 'AUR62008187' => 'cqu', 'AUR62008188' => 'cqu', 'AUR62027954' => 'cqu', 'AUR62028766' => 'cqu', 'AUR62028767' => 'cqu', 'AUR62028768' => 'cqu', 'AUR62028886' => 'cqu', 'AUR62029563' => 'cqu', 'AUR62038832' => 'cqu', 'BcaB01g04149' => 'bca', 'BcaB03g12940' => 'bca', 'BcaB03g13090' => 'bca', 'BcaB03g14466' => 'bca', 'BcaB05g24035' => 'bca', 'BcaC01g06050' => 'bca', 'BcaC04g19148' => 'bca', 'BcaC04g20761' => 'bca', 'BcaC06g32845' => 'bca', 'BcaC07g41274' => 'bca', 'BcaC09g50827' => 'bca', 'BcaNung00741' => 'bca', 'BcaNung00742' => 'bca', 'BcaNung01859' => 'bca', 'BcaNung03985' => 'bca', 'BcaNung03989' => 'bca', 'BcaNung05661' => 'bca', 'BolC1t00257H' => 'bol', 'BolC1t01956H' => 'bol', 'BolC2t06534H' => 'bol', 'BolC3t14334H' => 'bol', 'BolC5t30451H' => 'bol', 'BolC7t45880H' => 'bol', 'BolC7t46586H' => 'bol', 'BolC8t49301H' => 'bol', 'BolC8t51837H' => 'bol', 'BolC9t56822H' => 'bol', 'BolC9t59235H' => 'bol', 'BraA01t00234Z' => 'bra', 'BraA01t01563Z' => 'bra', 'BraA02t05147Z' => 'bra', 'BraA03t10947Z' => 'bra', 'BraA03t14633Z' => 'bra', 'BraA08t35112Z' => 'bra', 'BraA09t41330Z' => 'bra', 'BraA10t44570Z' => 'bra', 'C01p02670' => 'bna', 'C01p20260' => 'bna', 'C02p05890' => 'bna', 'C03p19530' => 'bna', 'C05p17470' => 'bna', 'C07p53900' => 'bna', 'C07p61630' => 'bna', 'C08p16800' => 'bna', 'C08p42810' => 'bna', 'C09p39480' => 'bna', 'C09p63980' => 'bna', 'CAN.G1001.7' => 'can', 'CAN.G1034.55' => 'can', 'CAN.G143.7' => 'can', 'CAN.G3340.1' => 'can', 'CAN.G358.19' => 'can', 'CAN.G373.2' => 'can', 'CAN.G674.16' => 'can', 'CAN.G674.17' => 'can', 'CAN.G674.18' => 'can', 'CAN.G732.2' => 'can', 'CAN.G732.3' => 'can', 'CAN.G993.39' => 'can', 'CANSAT01G2052' => 'cansat', 'CANSAT80G0070' => 'cansat', 'CANSAT80G0483' => 'cansat', 'CANSAT80G0625' => 'cansat', 'CARHR019690' => 'chi', 'CARHR080280' => 'chi', 'CARHR152750' => 'chi', 'CARHR152760' => 'chi', 'CARHR152770' => 'chi', 'CARHR200340' => 'chi', 'CARHR232370' => 'chi', 'CARHR244670' => 'chi', 'CARHR244680' => 'chi', 'CARHR257520' => 'chi', 'Carub.0001s1872' => 'cru', 'Carub.0006s1130' => 'cru', 'Carub.0007s0396' => 'cru', 'Carub.0007s0397' => 'cru', 'Carub.0007s1608' => 'cru', 'Carub.0008s1068' => 'cru', 'Carub.0008s1077' => 'cru', 'Ca_16158_v3' => 'car', 'Ca_17571_v3' => 'car', 'Ca_21936_v3' => 'car', 'Ca_22350_v3' => 'car', 'CBR_g22445' => 'cbr', 'CBR_g26290' => 'cbr', 'Cc04_g09610' => 'ccan', 'Cc04_g12280' => 'ccan', 'Cc07_g10230' => 'ccan', 'CDE02G0093' => 'cde', 'CDE02G0701' => 'cde', 'CDE04G1050' => 'cde', 'CDE05G1833' => 'cde', 'CDE05G3058' => 'cde', 'CDE05G3380' => 'cde', 'CDE06G0536' => 'cde', 'Cfa006923' => 'cfa', 'Cfa009402' => 'cfa', 'Cfa018751' => 'cfa', 'Cfa019164' => 'cfa', 'Cfa022935' => 'cfa', 'Ciclev10019081m.g' => 'ccl', 'Ciclev10025076m.g' => 'ccl', 'Ciclev10030712m.g' => 'ccl', 'Ciclev10033760m.g' => 'ccl', 'CiPaw.05G105600' => 'cil', 'CiPaw.08G136700' => 'cil', 'CiPaw.11G003900' => 'cil', 'CiPaw.11G023700' => 'cil', 'CiPaw.12G003700' => 'cil', 'ClCG06G017100' => 'cla', 'ClCG06G018110' => 'cla', 'ClCG07G008800' => 'cla', 'ClCG07G015330' => 'cla', 'COL.COLO4_13698' => 'col', 'COL.COLO4_16659' => 'col', 'COL.COLO4_21986' => 'col', 'COL.COLO4_24049' => 'col', 'COL.COLO4_29061' => 'col', 'COL.COLO4_29075' => 'col', 'COL.COLO4_30094' => 'col', 'Cpa.g.c33689' => 'cpa', 'Cpa.g.sc108.39' => 'cpa', 'Cpa.g.sc108.41' => 'cpa', 'Cpa.g.sc1163.1' => 'cpa', 'Cpa.g.sc4.155' => 'cpa', 'Cpa.g.sc6.194' => 'cpa', 'CsaV3_1G000340' => 'csa', 'CsaV3_1G001400' => 'csa', 'CsaV3_4G002220' => 'csa', 'CsaV3_4G005370' => 'csa', 'CSS0007487' => 'camsi', 'CSS0008066' => 'camsi', 'CSS0009120' => 'camsi', 'CSS0015512' => 'camsi', 'CSS0022409' => 'camsi', 'CSS0025358' => 'camsi', 'CSS0044547' => 'camsi', 'DCAR_013057' => 'dca', 'DCAR_015058' => 'dca', 'DCAR_016027' => 'dca', 'DCAR_017327' => 'dca', 'DCAR_020743' => 'dca', 'DCAR_026157' => 'dca', 'DCAR_032339' => 'dca', 'DCAR_032340' => 'dca', 'Dinv11200' => 'din', 'Dinv11201' => 'din', 'Dinv20631' => 'din', 'Dinv23182' => 'din', 'Dinv33466' => 'din', 'Dinv33583' => 'din', 'Dinv38565' => 'din', 'Duzib068G0200' => 'dzi', 'Duzib147G0132' => 'dzi', 'Duzib147G0635' => 'dzi', 'Duzib205G1670' => 'dzi', 'Duzib251G0606' => 'dzi', 'ECA232G3336' => 'eca', 'ECA232G3763' => 'eca', 'ECA232G4845' => 'eca', 'ECA234G1607' => 'eca', 'ECA246G0932' => 'eca', 'ECA247G0781' => 'eca', 'ECA247G1932' => 'eca', 'ECA247G2079' => 'eca', 'ECA247G3338' => 'eca', 'ECA247G4115' => 'eca', 'EL10Ac3g06552' => 'bvu', 'EL10Ac5g10721' => 'bvu', 'EL10Ac5g10722' => 'bvu', 'EL10Ac5g10723' => 'bvu', 'EL10Ac5g11361' => 'bvu', 'EL10Ac6g13553' => 'bvu', 'EL10As8g23872' => 'bvu', 'Eucgr.B00250' => 'egr', 'Eucgr.B00251' => 'egr', 'Eucgr.B03533' => 'egr', 'Eucgr.I02381' => 'egr', 'Eucgr.K02700' => 'egr', 'FAN02G0174' => 'fan', 'FAN02G3146' => 'fan', 'FAN04G1672' => 'fan', 'FAN04G2273' => 'fan', 'FAN05G2791' => 'fan', 'FAN05G4035' => 'fan', 'FAN07G0834' => 'fan', 'FAN08G1198' => 'fan', 'FAN09G4182' => 'fan', 'FAN12G0496' => 'fan', 'FAN13G1027' => 'fan', 'FAN13G2951' => 'fan', 'FAN14G0705' => 'fan', 'FAN14G0720' => 'fan', 'FAN17G0201' => 'fan', 'FAN17G2665' => 'fan', 'FAN18G1456' => 'fan', 'FAN18G1525' => 'fan', 'FAN18G3500' => 'fan', 'FAN28G2670' => 'fan', 'FvH4_1g12391' => 'fve', 'FvH4_4g23220' => 'fve', 'FvH4_5g08810' => 'fve', 'FvH4_5g28960' => 'fve', 'FvH4_6g42820' => 'fve', 'FvH4_6g51110' => 'fve', 'Glyma.02G051802' => 'gma', 'Glyma.04G185300' => 'gma', 'Glyma.05G202900' => 'gma', 'Glyma.08G010300' => 'gma', 'Glyma.16G131900' => 'gma', 'Glyma.17G087900' => 'gma', 'Gohir.A07G048600' => 'ghi', 'Gohir.A11G179000' => 'ghi', 'Gohir.A12G140900' => 'ghi', 'Gohir.A12G140950' => 'ghi', 'Gohir.A12G191700' => 'ghi', 'Gohir.A13G086300' => 'ghi', 'Gohir.D07G052900' => 'ghi', 'Gohir.D11G186600' => 'ghi', 'Gohir.D12G145575' => 'ghi', 'Gohir.D12G145650' => 'ghi', 'Gohir.D12G145725' => 'ghi', 'Gohir.D12G194050' => 'ghi', 'Gohir.D13G091800' => 'ghi', 'Gorai.001G055900' => 'gra', 'Gorai.007G198400' => 'gra', 'Gorai.008G157000' => 'gra', 'Gorai.008G157100' => 'gra', 'Gorai.008G208700' => 'gra', 'Gorai.010G138700' => 'gra', 'GSVIVG01000977001' => 'vvi', 'GSVIVG01007708001' => 'vvi', 'GSVIVG01008587001' => 'vvi', 'GSVIVG01018849001' => 'vvi', 'GSVIVG01032432001' => 'vvi', 'HanXRQChr02g0034131' => 'han', 'HanXRQChr02g0035981' => 'han', 'HanXRQChr02g0035991' => 'han', 'HanXRQChr05g0155611' => 'han', 'HanXRQChr05g0155621' => 'han', 'HanXRQChr08g0236501' => 'han', 'HanXRQChr09g0261321' => 'han', 'HanXRQChr09g0272081' => 'han', 'HanXRQChr10g0310741' => 'han', 'HanXRQChr11g0325591' => 'han', 'HanXRQChr12g0385691' => 'han', 'HanXRQChr13g0387801' => 'han', 'HanXRQChr15g0463011' => 'han', 'Haze_03826' => 'cav', 'Haze_03827' => 'cav', 'Haze_07183' => 'cav', 'Haze_07537' => 'cav', 'Haze_07539' => 'cav', 'Haze_12461' => 'cav', 'Haze_16115' => 'cav', 'Haze_16808' => 'cav', 'Haze_18531' => 'cav', 'Hma1.2p1_0046F.1_g026700' => 'hma', 'Hma1.2p1_0046F.1_g026710' => 'hma', 'Hma1.2p1_0168F.1_g074340' => 'hma', 'Hma1.2p1_0266F.1_g107030' => 'hma', 'Hma1.2p1_0266F.1_g107060' => 'hma', 'Hma1.2p1_0275F.1_g110510' => 'hma', 'Hma1.2p1_0592F.1_g185490' => 'hma', 'Hma1.2p1_0592F.1_g185500' => 'hma', 'Hma1.2p1_0592F.1_g185510' => 'hma', 'Hma1.2p1_0592F.1_g185520' => 'hma', 'Hma1.2p1_0592F.1_g185530' => 'hma', 'Hma1.2p1_0818F.1_g223450' => 'hma', 'HPP92_009708' => 'vpl', 'HPP92_009793' => 'vpl', 'HPP92_009796' => 'vpl', 'HPP92_009797' => 'vpl', 'HPP92_014940' => 'vpl', 'HPP92_014988' => 'vpl', 'Hund02463' => 'sun', 'Hund02760' => 'sun', 'Hund05071' => 'sun', 'Hund10108' => 'sun', 'Hund11204' => 'sun', 'Hund14016' => 'sun', 'Hund16464' => 'sun', 'Lalb_Chr09g0333391' => 'lal', 'Lalb_Chr11g0070461' => 'lal', 'Lalb_Chr12g0201671' => 'lal', 'Lalb_Chr13g0297161' => 'lal', 'Lj1g0002823' => 'lja', 'Lj3C1074T6' => 'lonja', 'Lj4A212T28' => 'lonja', 'Lj4g0005516' => 'lja', 'Lj4g0013705' => 'lja', 'Lj4g0027865' => 'lja', 'Lj5C92G16' => 'lonja', 'Lj5C92T12' => 'lonja', 'Lj7C596T3' => 'lonja', 'Lj9A446G59' => 'lonja', 'Lj9A482G21' => 'lonja', 'Lsat_1_v5_gn_1_28261' => 'lsa', 'Lsat_1_v5_gn_1_28281' => 'lsa', 'Lsat_1_v5_gn_1_32721' => 'lsa', 'Lsat_1_v5_gn_4_151760' => 'lsa', 'Lsat_1_v5_gn_4_2120' => 'lsa', 'Lsat_1_v5_gn_4_75761' => 'lsa', 'Lsat_1_v5_gn_5_10920' => 'lsa', 'Manes.02G099900' => 'mes', 'Manes.11G096200' => 'mes', 'Manes.12G007200' => 'mes', 'Manes.14G048300' => 'mes', 'Manes.17G114700' => 'mes', 'Mapoly0002s0070' => 'mpo', 'Mapoly0029s0099' => 'mpo', 'MBI07_g24742_MAGBIO' => 'mbi', 'MBI10_g27988_MAGBIO' => 'mbi', 'MBI11_g13057_MAGBIO' => 'mbi', 'MD02G1137200' => 'mdo', 'MD06G1137200' => 'mdo', 'MD07G1122300' => 'mdo', 'MD09G1078200' => 'mdo', 'MD13G1123700' => 'mdo', 'MD14G1151900' => 'mdo', 'MD17G1030900' => 'mdo', 'MD17G1068200' => 'mdo', 'MD17G1068600' => 'mdo', 'Medtr3g077540' => 'mtr', 'Medtr4g105530' => 'mtr', 'Medtr8g076580' => 'mtr', 'Medtr8g076590' => 'mtr', 'Medtr8g096410' => 'mtr', 'MELO3C016411.2' => 'cme', 'MELO3C017780.2' => 'cme', 'MELO3C022560.2' => 'cme', 'MELO3C026187.2' => 'cme', 'MELO3C026286.2' => 'cme', 'MELO3C032854.2' => 'cme', 'Migut.H02495' => 'egut', 'Migut.I00561' => 'egut', 'Migut.K01015' => 'egut', 'Migut.K01016' => 'egut', 'Migut.L00743' => 'egut', 'Migut.L00744' => 'egut', 'Migut.L00746' => 'egut', 'Migut.L00798' => 'egut', 'Migut.L00799' => 'egut', 'Migut.N02096' => 'egut', 'MSTRG.11259' => 'ama', 'MSTRG.23142' => 'ama', 'MSTRG.2499' => 'ama', 'Nitab4.5_0000003g0730' => 'nta', 'Nitab4.5_0000137g0020' => 'nta', 'Nitab4.5_0000721g0210' => 'nta', 'Nitab4.5_0000723g0050' => 'nta', 'Nitab4.5_0000913g0070' => 'nta', 'Nitab4.5_0001332g0040' => 'nta', 'Nitab4.5_0001771g0050' => 'nta', 'Nitab4.5_0001918g0050' => 'nta', 'Nitab4.5_0002686g0030' => 'nta', 'Nitab4.5_0003156g0020' => 'nta', 'Nitab4.5_0003383g0040' => 'nta', 'Nitab4.5_0003918g0010' => 'nta', 'Nitab4.5_0006760g0010' => 'nta', 'Nn1g05981' => 'nnu', 'Nn1g06288' => 'nnu', 'Nn3g16371' => 'nnu', 'Nn3g16786' => 'nnu', 'Nn4g22232' => 'nnu', 'Oeu005144.1' => 'oeu', 'Oeu005145.1' => 'oeu', 'Oeu011348.1' => 'oeu', 'Oeu016415.1' => 'oeu', 'Oeu023501.1' => 'oeu', 'Oeu044473.1' => 'oeu', 'Oeu048892.2' => 'oeu', 'Os01g0549200' => 'osa', 'Os02g0469300' => 'osa', 'Os04g0311100' => 'osa', 'Os06g0474900' => 'osa', 'Os10g0181700' => 'osa', 'Os11g0454800' => 'osa', 'Peaxi162Scf00037g00714' => 'pax', 'Peaxi162Scf00084g01217' => 'pax', 'Peaxi162Scf00257g00217' => 'pax', 'Peaxi162Scf00516g00215' => 'pax', 'Peaxi162Scf00689g00123' => 'pax', 'PGR044G2719' => 'pgr', 'PGR083G1360' => 'pgr', 'PGR102G2849' => 'pgr', 'PGR119G2534' => 'pgr', 'PGSC0003DMG400003538' => 'stu', 'PGSC0003DMG400028138' => 'stu', 'PGSC0003DMG400031732' => 'stu', 'PGSC0003DMG400038165' => 'stu', 'Phvul.002G284600' => 'pvu', 'Phvul.003G258200' => 'pvu', 'Phvul.009G176500' => 'pvu', 'Potri.003G167201' => 'ptr', 'Potri.005G118400' => 'ptr', 'Potri.012G089000' => 'ptr', 'Potri.012G102800' => 'ptr', 'Potri.015G079400' => 'ptr', 'Potri.015G100900' => 'ptr', 'Pp3c14_9810' => 'ppa', 'Pp3c15_10450' => 'ppa', 'Pp3c20_19150' => 'ppa', 'Pp3c23_12740' => 'ppa', 'Pp3c23_6310' => 'ppa', 'Pp3c24_3720' => 'ppa', 'Pp3c27_2580' => 'ppa', 'Pp3c9_8990' => 'ppa', 'PRCOL_00002854' => 'pco', 'Prupe.1G221200' => 'ppe', 'Prupe.3G289000' => 'ppe', 'Prupe.5G147000' => 'ppe', 'Prupe.6G157300' => 'ppe', 'Prupe.7G163400' => 'ppe', 'Psat0s2177g0040' => 'psa', 'Psat3g174760' => 'psa', 'Psat3g192160' => 'psa', 'Psat4g058520' => 'psa', 'Psat4g096840' => 'psa', 'Psat7g037320' => 'psa', 'PSO017G1274' => 'pso', 'PSO017G5166' => 'pso', 'PSO063G4558' => 'pso', 'PSO170G4458' => 'pso', 'PSO170G5005' => 'pso', 'PSO210G6156' => 'pso', 'PSO210G6635' => 'pso', 'PSO210G7397' => 'pso', 'PSO210G7700' => 'pso', 'PSO455G0035' => 'pso', 'PSO455G0180' => 'pso', 'PSO478G4515' => 'pso', 'PSO832G1305' => 'pso', 'PSO832G3489' => 'pso', 'QL02p075247' => 'qlo', 'QL03p051148' => 'qlo', 'QL05p010313' => 'qlo', 'QL06p034627' => 'qlo', 'QL10p001889' => 'qlo', 'QL10p010846' => 'qlo', 'RcHm_v2.0_Chr1g0350621' => 'rch', 'RcHm_v2.0_Chr1g0350641' => 'rch', 'RcHm_v2.0_Chr2g0092891' => 'rch', 'RcHm_v2.0_Chr2g0100251' => 'rch', 'RcHm_v2.0_Chr2g0158661' => 'rch', 'RcHm_v2.0_Chr2g0172741' => 'rch', 'RcHm_v2.0_Chr4g0429571' => 'rch', 'RcHm_v2.0_Chr5g0042471' => 'rch', 'RcHm_v2.0_Chr7g0189451' => 'rch', 'Rhsim08G0052000' => 'rsi', 'Rhsim08G0174400' => 'rsi', 'Rhsim08G0193200' => 'rsi', 'Rhsim10G0214800' => 'rsi', 'Rhsim10G0214900' => 'rsi', 'Rhsim10G0215000' => 'rsi', 'Rhsim12G0022900' => 'rsi', 'Rhsim12G0177500' => 'rsi', 'Rhsim12G0177700' => 'rsi', 'Sabra03G0122600' => 'sbr', 'Sabra05G0097400' => 'sbr', 'Sabra12G0064100' => 'sbr', 'Sabra15G0121300' => 'sbr', 'SalBow2G0642' => 'sbo', 'SalBow5G2667' => 'sbo', 'SalBow5G4873' => 'sbo', 'SalBow8G2395' => 'sbo', 'Sc03g0003290' => 'sci', 'Sc10g0010130' => 'sci', 'Sc22g0003650' => 'sci', 'Sed0001603' => 'sed', 'Sed0004259' => 'sed', 'Sed0006789' => 'sed', 'Sed0011838' => 'sed', 'Sed0012964' => 'sed', 'Sed0016383' => 'sed', 'Sed0019010' => 'sed', 'Sed0020188' => 'sed', 'SEGI_04702' => 'sgi', 'SEGI_17231' => 'sgi', 'SEGI_18877' => 'sgi', 'SEGI_25196' => 'sgi', 'SEGI_25515' => 'sgi', 'SEGI_28445' => 'sgi', 'SEGI_37452' => 'sgi', 'SGA_v2.0_scaffold188G40336' => 'sas', 'SGA_v2.0_scaffold228G43247' => 'sas', 'SGA_v2.0_scaffold280G46853' => 'sas', 'SGA_v2.0_scaffold34G13808' => 'sas', 'SGA_v2.0_scaffold40G15576' => 'sas', 'SGA_v2.0_scaffold611G53188' => 'sas', 'SGA_v2.0_scaffold78G25461' => 'sas', 'SGA_v2.0_scaffold90G27888' => 'sas', 'SHI08601' => 'shi', 'SHI08606' => 'shi', 'SHI17117' => 'shi', 'SHI17119' => 'shi', 'SMO118G0201' => 'smo', 'SMO169G0247' => 'smo', 'SMO176G0006' => 'smo', 'SMO176G0015' => 'smo', 'SMO202G0006' => 'smo', 'SMO240G0050' => 'smo', 'SMO286G0009' => 'smo', 'SMO338G0033' => 'smo', 'SMO356G0533' => 'smo', 'SMO364G0382' => 'smo', 'SMO367G0166' => 'smo', 'SMO367G1098' => 'smo', 'Solyc01g009920.3' => 'sly', 'Solyc01g099300.3' => 'sly', 'Solyc02g084700.3' => 'sly', 'Solyc03g097520.3' => 'sly', 'Solyc06g071580.3' => 'sly', 'Solyc10g081760.3' => 'sly', 'Sopen01g005480' => 'spe', 'Sopen01g042850' => 'spe', 'Sopen02g029370' => 'spe', 'Sopen03g028280' => 'spe', 'Sopen06g027870' => 'spe', 'Sopen10g032270' => 'spe', 'Sp5g18180' => 'spa', 'Sp6g12880' => 'spa', 'Sp6g30850' => 'spa', 'Sp7g22960' => 'spa', 'Sp7g34010' => 'spa', 'SpUn1326_0010' => 'spa', 'TAR371G0242' => 'tar', 'TAR622G0638' => 'tar', 'TAR628G1548' => 'tar', 'TAR629G1079' => 'tar', 'TAR629G3413' => 'tar', 'THA.LOC104804249' => 'tha', 'THA.LOC104808315' => 'tha', 'THA.LOC104809238' => 'tha', 'THA.LOC104825484' => 'tha', 'Thecc.01G025500' => 'tca', 'Thecc.03G015800' => 'tca', 'Thecc.03G018000' => 'tca', 'Thecc.03G134800' => 'tca', 'Thecc.04G014700' => 'tca', 'Thhalv10006991m.g' => 'esa', 'Thhalv10012707m.g' => 'esa', 'Thhalv10015739m.g' => 'esa', 'Thhalv10024553m.g' => 'esa', 'Thhalv10024673m.g' => 'esa', 'Thhalv10029187m.g' => 'esa', 'TPR.G12971' => 'tpr', 'TPR.G29396' => 'tpr', 'TPR.G33376' => 'tpr', 'TPR.G35508' => 'tpr', 'TPR.G35516' => 'tpr', 'TPR.G37317' => 'tpr', 'TPR.G37389' => 'tpr', 'TPR.G37523' => 'tpr', 'TPR.G559' => 'tpr', 'TWI14G0070' => 'twi', 'TWI14G0729' => 'twi', 'TWI18G0596' => 'twi', 'TWI39G0780' => 'twi', 'TWI39G0850' => 'twi', 'TWI73G1052' => 'twi', 'unitig_52.g17485' => 'ugi', 'unitig_61.g26355' => 'ugi', 'vmacro01040' => 'vma', 'vmacro16731' => 'vma', 'vmacro18270' => 'vma', 'vmacro19142' => 'vma', 'vmacro19407' => 'vma', 'vmacro19408' => 'vma', 'vmacro21899' => 'vma', 'vmacro21900' => 'vma', 'vmacro21901' => 'vma', 'VMungo0251G0490' => 'vmu', 'VMungo0251G1748' => 'vmu', 'VMungo1309G0421' => 'vmu', 'Zm00001eb086500' => 'zma', 'Zm00001eb150680' => 'zma', 'Zm00001eb162330' => 'zma', 'Zm00001eb203130' => 'zma', 'Zm00001eb369480' => 'zma', 'Zm00001eb382340' => 'zma', 'Zm00001eb416360' => 'zma' ) $gf_id = 'HOM05D000902' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000902' ) $data_identifier = 'HOM05D000902' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 13, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 10, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 6, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 9, 'hma' => (int) 12, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 4, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 6, 'ppa' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 6, 'rch' => (int) 9, 'rsi' => (int) 9, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 12, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 3, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416360' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000902', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '663', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02470' => 'bna', 'A01p16260' => 'bna', 'A02p01680' => 'bna', 'A03p16600' => 'bna', 'A03p55660' => 'bna', 'A03p64160' => 'bna', 'A03p64170' => 'bna', 'A08p31900' => 'bna', 'A09p59530' => 'bna', 'A10p08230' => 'bna', 'A10p25090' => 'bna', 'Aa31LG3G7100' => 'aar', 'Aa31LG3G7110' => 'aar', 'Aa31LG6G13160' => 'aar', 'Aa31LG7G10770' => 'aar', 'Aa31LG7G3830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2723' => 'aag', 'Actinidia08045' => 'ach', 'Actinidia08888' => 'ach', 'Actinidia18333' => 'ach', 'Actinidia19334' => 'ach', 'Actinidia25552' => 'ach', 'Actinidia26089' => 'ach', 'Actinidia30615' => 'ach', 'Actinidia30616' => 'ach', 'Actinidia33083' => 'ach', 'Actinidia35762' => 'ach', 'Ah.02g110620' => 'amhyb', 'Ah.11g046390' => 'amhyb', 'AL1G31670' => 'aly', 'AL6G23730' => 'aly', 'AL7G14740' => 'aly', 'AL7G14750' => 'aly', 'AL7G14760' => 'aly', 'AL7G28220' => 'aly', 'AL8G24940' => 'aly', 'Aqoxy3G01665' => 'aox', 'Aqoxy3G02853' => 'aox', 'Aqoxy5G01513' => 'aox', 'Aqoxy5G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8SKA4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ75LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKDA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0LJZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7REX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZP4YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWX7I5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2QKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS0L9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPCD8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q161UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC7XCF' => 'arhy', 'AT1G19100' => 'ath', 'AT4G24970' => 'ath', 'AT4G36270' => 'ath', 'AT4G36280' => 'ath', 'AT4G36290' => 'ath', 'AT5G13130' => 'ath', 'AT5G50780' => 'ath', 'ATR0582G266' => 'atr', 'ATR0661G195' => 'atr', 'ATR1152G031' => 'atr', 'Atru.chr11.2382' => 'acertr', 'Atru.chr12.2337' => 'acertr', 'Atru.chr3.744' => 'acertr', 'Atru.chr6.1870' => 'acertr', 'Atru.chr9.2515' => 'acertr', 'AUR62004120' => 'cqu', 'AUR62005667' => 'cqu', 'AUR62007634' => 'cqu', 'AUR62008186' => 'cqu', 'AUR62008187' => 'cqu', 'AUR62008188' => 'cqu', 'AUR62027954' => 'cqu', 'AUR62028766' => 'cqu', 'AUR62028767' => 'cqu', 'AUR62028768' => 'cqu', 'AUR62028886' => 'cqu', 'AUR62029563' => 'cqu', 'AUR62038832' => 'cqu', 'BcaB01g04149' => 'bca', 'BcaB03g12940' => 'bca', 'BcaB03g13090' => 'bca', 'BcaB03g14466' => 'bca', 'BcaB05g24035' => 'bca', 'BcaC01g06050' => 'bca', 'BcaC04g19148' => 'bca', 'BcaC04g20761' => 'bca', 'BcaC06g32845' => 'bca', 'BcaC07g41274' => 'bca', 'BcaC09g50827' => 'bca', 'BcaNung00741' => 'bca', 'BcaNung00742' => 'bca', 'BcaNung01859' => 'bca', 'BcaNung03985' => 'bca', 'BcaNung03989' => 'bca', 'BcaNung05661' => 'bca', 'BolC1t00257H' => 'bol', 'BolC1t01956H' => 'bol', 'BolC2t06534H' => 'bol', 'BolC3t14334H' => 'bol', 'BolC5t30451H' => 'bol', 'BolC7t45880H' => 'bol', 'BolC7t46586H' => 'bol', 'BolC8t49301H' => 'bol', 'BolC8t51837H' => 'bol', 'BolC9t56822H' => 'bol', 'BolC9t59235H' => 'bol', 'BraA01t00234Z' => 'bra', 'BraA01t01563Z' => 'bra', 'BraA02t05147Z' => 'bra', 'BraA03t10947Z' => 'bra', 'BraA03t14633Z' => 'bra', 'BraA08t35112Z' => 'bra', 'BraA09t41330Z' => 'bra', 'BraA10t44570Z' => 'bra', 'C01p02670' => 'bna', 'C01p20260' => 'bna', 'C02p05890' => 'bna', 'C03p19530' => 'bna', 'C05p17470' => 'bna', 'C07p53900' => 'bna', 'C07p61630' => 'bna', 'C08p16800' => 'bna', 'C08p42810' => 'bna', 'C09p39480' => 'bna', 'C09p63980' => 'bna', 'CAN.G1001.7' => 'can', 'CAN.G1034.55' => 'can', 'CAN.G143.7' => 'can', 'CAN.G3340.1' => 'can', 'CAN.G358.19' => 'can', 'CAN.G373.2' => 'can', 'CAN.G674.16' => 'can', 'CAN.G674.17' => 'can', 'CAN.G674.18' => 'can', 'CAN.G732.2' => 'can', 'CAN.G732.3' => 'can', 'CAN.G993.39' => 'can', 'CANSAT01G2052' => 'cansat', 'CANSAT80G0070' => 'cansat', 'CANSAT80G0483' => 'cansat', 'CANSAT80G0625' => 'cansat', 'CARHR019690' => 'chi', 'CARHR080280' => 'chi', 'CARHR152750' => 'chi', 'CARHR152760' => 'chi', 'CARHR152770' => 'chi', 'CARHR200340' => 'chi', 'CARHR232370' => 'chi', 'CARHR244670' => 'chi', 'CARHR244680' => 'chi', 'CARHR257520' => 'chi', 'Carub.0001s1872' => 'cru', 'Carub.0006s1130' => 'cru', 'Carub.0007s0396' => 'cru', 'Carub.0007s0397' => 'cru', 'Carub.0007s1608' => 'cru', 'Carub.0008s1068' => 'cru', 'Carub.0008s1077' => 'cru', 'Ca_16158_v3' => 'car', 'Ca_17571_v3' => 'car', 'Ca_21936_v3' => 'car', 'Ca_22350_v3' => 'car', 'CBR_g22445' => 'cbr', 'CBR_g26290' => 'cbr', 'Cc04_g09610' => 'ccan', 'Cc04_g12280' => 'ccan', 'Cc07_g10230' => 'ccan', 'CDE02G0093' => 'cde', 'CDE02G0701' => 'cde', 'CDE04G1050' => 'cde', 'CDE05G1833' => 'cde', 'CDE05G3058' => 'cde', 'CDE05G3380' => 'cde', 'CDE06G0536' => 'cde', 'Cfa006923' => 'cfa', 'Cfa009402' => 'cfa', 'Cfa018751' => 'cfa', 'Cfa019164' => 'cfa', 'Cfa022935' => 'cfa', 'Ciclev10019081m.g' => 'ccl', 'Ciclev10025076m.g' => 'ccl', 'Ciclev10030712m.g' => 'ccl', 'Ciclev10033760m.g' => 'ccl', 'CiPaw.05G105600' => 'cil', 'CiPaw.08G136700' => 'cil', 'CiPaw.11G003900' => 'cil', 'CiPaw.11G023700' => 'cil', 'CiPaw.12G003700' => 'cil', 'ClCG06G017100' => 'cla', 'ClCG06G018110' => 'cla', 'ClCG07G008800' => 'cla', 'ClCG07G015330' => 'cla', 'COL.COLO4_13698' => 'col', 'COL.COLO4_16659' => 'col', 'COL.COLO4_21986' => 'col', 'COL.COLO4_24049' => 'col', 'COL.COLO4_29061' => 'col', 'COL.COLO4_29075' => 'col', 'COL.COLO4_30094' => 'col', 'Cpa.g.c33689' => 'cpa', 'Cpa.g.sc108.39' => 'cpa', 'Cpa.g.sc108.41' => 'cpa', 'Cpa.g.sc1163.1' => 'cpa', 'Cpa.g.sc4.155' => 'cpa', 'Cpa.g.sc6.194' => 'cpa', 'CsaV3_1G000340' => 'csa', 'CsaV3_1G001400' => 'csa', 'CsaV3_4G002220' => 'csa', 'CsaV3_4G005370' => 'csa', 'CSS0007487' => 'camsi', 'CSS0008066' => 'camsi', 'CSS0009120' => 'camsi', 'CSS0015512' => 'camsi', 'CSS0022409' => 'camsi', 'CSS0025358' => 'camsi', 'CSS0044547' => 'camsi', 'DCAR_013057' => 'dca', 'DCAR_015058' => 'dca', 'DCAR_016027' => 'dca', 'DCAR_017327' => 'dca', 'DCAR_020743' => 'dca', 'DCAR_026157' => 'dca', 'DCAR_032339' => 'dca', 'DCAR_032340' => 'dca', 'Dinv11200' => 'din', 'Dinv11201' => 'din', 'Dinv20631' => 'din', 'Dinv23182' => 'din', 'Dinv33466' => 'din', 'Dinv33583' => 'din', 'Dinv38565' => 'din', 'Duzib068G0200' => 'dzi', 'Duzib147G0132' => 'dzi', 'Duzib147G0635' => 'dzi', 'Duzib205G1670' => 'dzi', 'Duzib251G0606' => 'dzi', 'ECA232G3336' => 'eca', 'ECA232G3763' => 'eca', 'ECA232G4845' => 'eca', 'ECA234G1607' => 'eca', 'ECA246G0932' => 'eca', 'ECA247G0781' => 'eca', 'ECA247G1932' => 'eca', 'ECA247G2079' => 'eca', 'ECA247G3338' => 'eca', 'ECA247G4115' => 'eca', 'EL10Ac3g06552' => 'bvu', 'EL10Ac5g10721' => 'bvu', 'EL10Ac5g10722' => 'bvu', 'EL10Ac5g10723' => 'bvu', 'EL10Ac5g11361' => 'bvu', 'EL10Ac6g13553' => 'bvu', 'EL10As8g23872' => 'bvu', 'Eucgr.B00250' => 'egr', 'Eucgr.B00251' => 'egr', 'Eucgr.B03533' => 'egr', 'Eucgr.I02381' => 'egr', 'Eucgr.K02700' => 'egr', 'FAN02G0174' => 'fan', 'FAN02G3146' => 'fan', 'FAN04G1672' => 'fan', 'FAN04G2273' => 'fan', 'FAN05G2791' => 'fan', 'FAN05G4035' => 'fan', 'FAN07G0834' => 'fan', 'FAN08G1198' => 'fan', 'FAN09G4182' => 'fan', 'FAN12G0496' => 'fan', 'FAN13G1027' => 'fan', 'FAN13G2951' => 'fan', 'FAN14G0705' => 'fan', 'FAN14G0720' => 'fan', 'FAN17G0201' => 'fan', 'FAN17G2665' => 'fan', 'FAN18G1456' => 'fan', 'FAN18G1525' => 'fan', 'FAN18G3500' => 'fan', 'FAN28G2670' => 'fan', 'FvH4_1g12391' => 'fve', 'FvH4_4g23220' => 'fve', 'FvH4_5g08810' => 'fve', 'FvH4_5g28960' => 'fve', 'FvH4_6g42820' => 'fve', 'FvH4_6g51110' => 'fve', 'Glyma.02G051802' => 'gma', 'Glyma.04G185300' => 'gma', 'Glyma.05G202900' => 'gma', 'Glyma.08G010300' => 'gma', 'Glyma.16G131900' => 'gma', 'Glyma.17G087900' => 'gma', 'Gohir.A07G048600' => 'ghi', 'Gohir.A11G179000' => 'ghi', 'Gohir.A12G140900' => 'ghi', 'Gohir.A12G140950' => 'ghi', 'Gohir.A12G191700' => 'ghi', 'Gohir.A13G086300' => 'ghi', 'Gohir.D07G052900' => 'ghi', 'Gohir.D11G186600' => 'ghi', 'Gohir.D12G145575' => 'ghi', 'Gohir.D12G145650' => 'ghi', 'Gohir.D12G145725' => 'ghi', 'Gohir.D12G194050' => 'ghi', 'Gohir.D13G091800' => 'ghi', 'Gorai.001G055900' => 'gra', 'Gorai.007G198400' => 'gra', 'Gorai.008G157000' => 'gra', 'Gorai.008G157100' => 'gra', 'Gorai.008G208700' => 'gra', 'Gorai.010G138700' => 'gra', 'GSVIVG01000977001' => 'vvi', 'GSVIVG01007708001' => 'vvi', 'GSVIVG01008587001' => 'vvi', 'GSVIVG01018849001' => 'vvi', 'GSVIVG01032432001' => 'vvi', 'HanXRQChr02g0034131' => 'han', 'HanXRQChr02g0035981' => 'han', 'HanXRQChr02g0035991' => 'han', 'HanXRQChr05g0155611' => 'han', 'HanXRQChr05g0155621' => 'han', 'HanXRQChr08g0236501' => 'han', 'HanXRQChr09g0261321' => 'han', 'HanXRQChr09g0272081' => 'han', 'HanXRQChr10g0310741' => 'han', 'HanXRQChr11g0325591' => 'han', 'HanXRQChr12g0385691' => 'han', 'HanXRQChr13g0387801' => 'han', 'HanXRQChr15g0463011' => 'han', 'Haze_03826' => 'cav', 'Haze_03827' => 'cav', 'Haze_07183' => 'cav', 'Haze_07537' => 'cav', 'Haze_07539' => 'cav', 'Haze_12461' => 'cav', 'Haze_16115' => 'cav', 'Haze_16808' => 'cav', 'Haze_18531' => 'cav', 'Hma1.2p1_0046F.1_g026700' => 'hma', 'Hma1.2p1_0046F.1_g026710' => 'hma', 'Hma1.2p1_0168F.1_g074340' => 'hma', 'Hma1.2p1_0266F.1_g107030' => 'hma', 'Hma1.2p1_0266F.1_g107060' => 'hma', 'Hma1.2p1_0275F.1_g110510' => 'hma', 'Hma1.2p1_0592F.1_g185490' => 'hma', 'Hma1.2p1_0592F.1_g185500' => 'hma', 'Hma1.2p1_0592F.1_g185510' => 'hma', 'Hma1.2p1_0592F.1_g185520' => 'hma', 'Hma1.2p1_0592F.1_g185530' => 'hma', 'Hma1.2p1_0818F.1_g223450' => 'hma', 'HPP92_009708' => 'vpl', 'HPP92_009793' => 'vpl', 'HPP92_009796' => 'vpl', 'HPP92_009797' => 'vpl', 'HPP92_014940' => 'vpl', 'HPP92_014988' => 'vpl', 'Hund02463' => 'sun', 'Hund02760' => 'sun', 'Hund05071' => 'sun', 'Hund10108' => 'sun', 'Hund11204' => 'sun', 'Hund14016' => 'sun', 'Hund16464' => 'sun', 'Lalb_Chr09g0333391' => 'lal', 'Lalb_Chr11g0070461' => 'lal', 'Lalb_Chr12g0201671' => 'lal', 'Lalb_Chr13g0297161' => 'lal', 'Lj1g0002823' => 'lja', 'Lj3C1074T6' => 'lonja', 'Lj4A212T28' => 'lonja', 'Lj4g0005516' => 'lja', 'Lj4g0013705' => 'lja', 'Lj4g0027865' => 'lja', 'Lj5C92G16' => 'lonja', 'Lj5C92T12' => 'lonja', 'Lj7C596T3' => 'lonja', 'Lj9A446G59' => 'lonja', 'Lj9A482G21' => 'lonja', 'Lsat_1_v5_gn_1_28261' => 'lsa', 'Lsat_1_v5_gn_1_28281' => 'lsa', 'Lsat_1_v5_gn_1_32721' => 'lsa', 'Lsat_1_v5_gn_4_151760' => 'lsa', 'Lsat_1_v5_gn_4_2120' => 'lsa', 'Lsat_1_v5_gn_4_75761' => 'lsa', 'Lsat_1_v5_gn_5_10920' => 'lsa', 'Manes.02G099900' => 'mes', 'Manes.11G096200' => 'mes', 'Manes.12G007200' => 'mes', 'Manes.14G048300' => 'mes', 'Manes.17G114700' => 'mes', 'Mapoly0002s0070' => 'mpo', 'Mapoly0029s0099' => 'mpo', 'MBI07_g24742_MAGBIO' => 'mbi', 'MBI10_g27988_MAGBIO' => 'mbi', 'MBI11_g13057_MAGBIO' => 'mbi', 'MD02G1137200' => 'mdo', 'MD06G1137200' => 'mdo', 'MD07G1122300' => 'mdo', 'MD09G1078200' => 'mdo', 'MD13G1123700' => 'mdo', 'MD14G1151900' => 'mdo', 'MD17G1030900' => 'mdo', 'MD17G1068200' => 'mdo', 'MD17G1068600' => 'mdo', 'Medtr3g077540' => 'mtr', 'Medtr4g105530' => 'mtr', 'Medtr8g076580' => 'mtr', 'Medtr8g076590' => 'mtr', 'Medtr8g096410' => 'mtr', 'MELO3C016411.2' => 'cme', 'MELO3C017780.2' => 'cme', 'MELO3C022560.2' => 'cme', 'MELO3C026187.2' => 'cme', 'MELO3C026286.2' => 'cme', 'MELO3C032854.2' => 'cme', 'Migut.H02495' => 'egut', 'Migut.I00561' => 'egut', 'Migut.K01015' => 'egut', 'Migut.K01016' => 'egut', 'Migut.L00743' => 'egut', 'Migut.L00744' => 'egut', 'Migut.L00746' => 'egut', 'Migut.L00798' => 'egut', 'Migut.L00799' => 'egut', 'Migut.N02096' => 'egut', 'MSTRG.11259' => 'ama', 'MSTRG.23142' => 'ama', 'MSTRG.2499' => 'ama', 'Nitab4.5_0000003g0730' => 'nta', 'Nitab4.5_0000137g0020' => 'nta', 'Nitab4.5_0000721g0210' => 'nta', 'Nitab4.5_0000723g0050' => 'nta', 'Nitab4.5_0000913g0070' => 'nta', 'Nitab4.5_0001332g0040' => 'nta', 'Nitab4.5_0001771g0050' => 'nta', 'Nitab4.5_0001918g0050' => 'nta', 'Nitab4.5_0002686g0030' => 'nta', 'Nitab4.5_0003156g0020' => 'nta', 'Nitab4.5_0003383g0040' => 'nta', 'Nitab4.5_0003918g0010' => 'nta', 'Nitab4.5_0006760g0010' => 'nta', 'Nn1g05981' => 'nnu', 'Nn1g06288' => 'nnu', 'Nn3g16371' => 'nnu', 'Nn3g16786' => 'nnu', 'Nn4g22232' => 'nnu', 'Oeu005144.1' => 'oeu', 'Oeu005145.1' => 'oeu', 'Oeu011348.1' => 'oeu', 'Oeu016415.1' => 'oeu', 'Oeu023501.1' => 'oeu', 'Oeu044473.1' => 'oeu', 'Oeu048892.2' => 'oeu', 'Os01g0549200' => 'osa', 'Os02g0469300' => 'osa', 'Os04g0311100' => 'osa', 'Os06g0474900' => 'osa', 'Os10g0181700' => 'osa', 'Os11g0454800' => 'osa', 'Peaxi162Scf00037g00714' => 'pax', 'Peaxi162Scf00084g01217' => 'pax', 'Peaxi162Scf00257g00217' => 'pax', 'Peaxi162Scf00516g00215' => 'pax', 'Peaxi162Scf00689g00123' => 'pax', 'PGR044G2719' => 'pgr', 'PGR083G1360' => 'pgr', 'PGR102G2849' => 'pgr', 'PGR119G2534' => 'pgr', 'PGSC0003DMG400003538' => 'stu', 'PGSC0003DMG400028138' => 'stu', 'PGSC0003DMG400031732' => 'stu', 'PGSC0003DMG400038165' => 'stu', 'Phvul.002G284600' => 'pvu', 'Phvul.003G258200' => 'pvu', 'Phvul.009G176500' => 'pvu', 'Potri.003G167201' => 'ptr', 'Potri.005G118400' => 'ptr', 'Potri.012G089000' => 'ptr', 'Potri.012G102800' => 'ptr', 'Potri.015G079400' => 'ptr', 'Potri.015G100900' => 'ptr', 'Pp3c14_9810' => 'ppa', 'Pp3c15_10450' => 'ppa', 'Pp3c20_19150' => 'ppa', 'Pp3c23_12740' => 'ppa', 'Pp3c23_6310' => 'ppa', 'Pp3c24_3720' => 'ppa', 'Pp3c27_2580' => 'ppa', 'Pp3c9_8990' => 'ppa', 'PRCOL_00002854' => 'pco', 'Prupe.1G221200' => 'ppe', 'Prupe.3G289000' => 'ppe', 'Prupe.5G147000' => 'ppe', 'Prupe.6G157300' => 'ppe', 'Prupe.7G163400' => 'ppe', 'Psat0s2177g0040' => 'psa', 'Psat3g174760' => 'psa', 'Psat3g192160' => 'psa', 'Psat4g058520' => 'psa', 'Psat4g096840' => 'psa', 'Psat7g037320' => 'psa', 'PSO017G1274' => 'pso', 'PSO017G5166' => 'pso', 'PSO063G4558' => 'pso', 'PSO170G4458' => 'pso', 'PSO170G5005' => 'pso', 'PSO210G6156' => 'pso', 'PSO210G6635' => 'pso', 'PSO210G7397' => 'pso', 'PSO210G7700' => 'pso', 'PSO455G0035' => 'pso', 'PSO455G0180' => 'pso', 'PSO478G4515' => 'pso', 'PSO832G1305' => 'pso', 'PSO832G3489' => 'pso', 'QL02p075247' => 'qlo', 'QL03p051148' => 'qlo', 'QL05p010313' => 'qlo', 'QL06p034627' => 'qlo', 'QL10p001889' => 'qlo', 'QL10p010846' => 'qlo', 'RcHm_v2.0_Chr1g0350621' => 'rch', 'RcHm_v2.0_Chr1g0350641' => 'rch', 'RcHm_v2.0_Chr2g0092891' => 'rch', 'RcHm_v2.0_Chr2g0100251' => 'rch', 'RcHm_v2.0_Chr2g0158661' => 'rch', 'RcHm_v2.0_Chr2g0172741' => 'rch', 'RcHm_v2.0_Chr4g0429571' => 'rch', 'RcHm_v2.0_Chr5g0042471' => 'rch', 'RcHm_v2.0_Chr7g0189451' => 'rch', 'Rhsim08G0052000' => 'rsi', 'Rhsim08G0174400' => 'rsi', 'Rhsim08G0193200' => 'rsi', 'Rhsim10G0214800' => 'rsi', 'Rhsim10G0214900' => 'rsi', 'Rhsim10G0215000' => 'rsi', 'Rhsim12G0022900' => 'rsi', 'Rhsim12G0177500' => 'rsi', 'Rhsim12G0177700' => 'rsi', 'Sabra03G0122600' => 'sbr', 'Sabra05G0097400' => 'sbr', 'Sabra12G0064100' => 'sbr', 'Sabra15G0121300' => 'sbr', 'SalBow2G0642' => 'sbo', 'SalBow5G2667' => 'sbo', 'SalBow5G4873' => 'sbo', 'SalBow8G2395' => 'sbo', 'Sc03g0003290' => 'sci', 'Sc10g0010130' => 'sci', 'Sc22g0003650' => 'sci', 'Sed0001603' => 'sed', 'Sed0004259' => 'sed', 'Sed0006789' => 'sed', 'Sed0011838' => 'sed', 'Sed0012964' => 'sed', 'Sed0016383' => 'sed', 'Sed0019010' => 'sed', 'Sed0020188' => 'sed', 'SEGI_04702' => 'sgi', 'SEGI_17231' => 'sgi', 'SEGI_18877' => 'sgi', 'SEGI_25196' => 'sgi', 'SEGI_25515' => 'sgi', 'SEGI_28445' => 'sgi', 'SEGI_37452' => 'sgi', 'SGA_v2.0_scaffold188G40336' => 'sas', 'SGA_v2.0_scaffold228G43247' => 'sas', 'SGA_v2.0_scaffold280G46853' => 'sas', 'SGA_v2.0_scaffold34G13808' => 'sas', 'SGA_v2.0_scaffold40G15576' => 'sas', 'SGA_v2.0_scaffold611G53188' => 'sas', 'SGA_v2.0_scaffold78G25461' => 'sas', 'SGA_v2.0_scaffold90G27888' => 'sas', 'SHI08601' => 'shi', 'SHI08606' => 'shi', 'SHI17117' => 'shi', 'SHI17119' => 'shi', 'SMO118G0201' => 'smo', 'SMO169G0247' => 'smo', 'SMO176G0006' => 'smo', 'SMO176G0015' => 'smo', 'SMO202G0006' => 'smo', 'SMO240G0050' => 'smo', 'SMO286G0009' => 'smo', 'SMO338G0033' => 'smo', 'SMO356G0533' => 'smo', 'SMO364G0382' => 'smo', 'SMO367G0166' => 'smo', 'SMO367G1098' => 'smo', 'Solyc01g009920.3' => 'sly', 'Solyc01g099300.3' => 'sly', 'Solyc02g084700.3' => 'sly', 'Solyc03g097520.3' => 'sly', 'Solyc06g071580.3' => 'sly', 'Solyc10g081760.3' => 'sly', 'Sopen01g005480' => 'spe', 'Sopen01g042850' => 'spe', 'Sopen02g029370' => 'spe', 'Sopen03g028280' => 'spe', 'Sopen06g027870' => 'spe', 'Sopen10g032270' => 'spe', 'Sp5g18180' => 'spa', 'Sp6g12880' => 'spa', 'Sp6g30850' => 'spa', 'Sp7g22960' => 'spa', 'Sp7g34010' => 'spa', 'SpUn1326_0010' => 'spa', 'TAR371G0242' => 'tar', 'TAR622G0638' => 'tar', 'TAR628G1548' => 'tar', 'TAR629G1079' => 'tar', 'TAR629G3413' => 'tar', 'THA.LOC104804249' => 'tha', 'THA.LOC104808315' => 'tha', 'THA.LOC104809238' => 'tha', 'THA.LOC104825484' => 'tha', 'Thecc.01G025500' => 'tca', 'Thecc.03G015800' => 'tca', 'Thecc.03G018000' => 'tca', 'Thecc.03G134800' => 'tca', 'Thecc.04G014700' => 'tca', 'Thhalv10006991m.g' => 'esa', 'Thhalv10012707m.g' => 'esa', 'Thhalv10015739m.g' => 'esa', 'Thhalv10024553m.g' => 'esa', 'Thhalv10024673m.g' => 'esa', 'Thhalv10029187m.g' => 'esa', 'TPR.G12971' => 'tpr', 'TPR.G29396' => 'tpr', 'TPR.G33376' => 'tpr', 'TPR.G35508' => 'tpr', 'TPR.G35516' => 'tpr', 'TPR.G37317' => 'tpr', 'TPR.G37389' => 'tpr', 'TPR.G37523' => 'tpr', 'TPR.G559' => 'tpr', 'TWI14G0070' => 'twi', 'TWI14G0729' => 'twi', 'TWI18G0596' => 'twi', 'TWI39G0780' => 'twi', 'TWI39G0850' => 'twi', 'TWI73G1052' => 'twi', 'unitig_52.g17485' => 'ugi', 'unitig_61.g26355' => 'ugi', 'vmacro01040' => 'vma', 'vmacro16731' => 'vma', 'vmacro18270' => 'vma', 'vmacro19142' => 'vma', 'vmacro19407' => 'vma', 'vmacro19408' => 'vma', 'vmacro21899' => 'vma', 'vmacro21900' => 'vma', 'vmacro21901' => 'vma', 'VMungo0251G0490' => 'vmu', 'VMungo0251G1748' => 'vmu', 'VMungo1309G0421' => 'vmu', 'Zm00001eb086500' => 'zma', 'Zm00001eb150680' => 'zma', 'Zm00001eb162330' => 'zma', 'Zm00001eb203130' => 'zma', 'Zm00001eb369480' => 'zma', 'Zm00001eb382340' => 'zma', 'Zm00001eb416360' => 'zma' ), 'gf_id' => 'HOM05D000902', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000902' ), 'data_identifier' => 'HOM05D000902', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000902', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '663', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02470' => 'bna', 'A01p16260' => 'bna', 'A02p01680' => 'bna', 'A03p16600' => 'bna', 'A03p55660' => 'bna', 'A03p64160' => 'bna', 'A03p64170' => 'bna', 'A08p31900' => 'bna', 'A09p59530' => 'bna', 'A10p08230' => 'bna', 'A10p25090' => 'bna', 'Aa31LG3G7100' => 'aar', 'Aa31LG3G7110' => 'aar', 'Aa31LG6G13160' => 'aar', 'Aa31LG7G10770' => 'aar', 'Aa31LG7G3830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2723' => 'aag', 'Actinidia08045' => 'ach', 'Actinidia08888' => 'ach', 'Actinidia18333' => 'ach', 'Actinidia19334' => 'ach', 'Actinidia25552' => 'ach', 'Actinidia26089' => 'ach', 'Actinidia30615' => 'ach', 'Actinidia30616' => 'ach', 'Actinidia33083' => 'ach', 'Actinidia35762' => 'ach', 'Ah.02g110620' => 'amhyb', 'Ah.11g046390' => 'amhyb', 'AL1G31670' => 'aly', 'AL6G23730' => 'aly', 'AL7G14740' => 'aly', 'AL7G14750' => 'aly', 'AL7G14760' => 'aly', 'AL7G28220' => 'aly', 'AL8G24940' => 'aly', 'Aqoxy3G01665' => 'aox', 'Aqoxy3G02853' => 'aox', 'Aqoxy5G01513' => 'aox', 'Aqoxy5G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8SKA4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ75LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKDA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0LJZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7REX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZP4YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWX7I5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2QKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS0L9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPCD8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q161UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC7XCF' => 'arhy', 'AT1G19100' => 'ath', 'AT4G24970' => 'ath', 'AT4G36270' => 'ath', 'AT4G36280' => 'ath', 'AT4G36290' => 'ath', 'AT5G13130' => 'ath', 'AT5G50780' => 'ath', 'ATR0582G266' => 'atr', 'ATR0661G195' => 'atr', 'ATR1152G031' => 'atr', 'Atru.chr11.2382' => 'acertr', 'Atru.chr12.2337' => 'acertr', 'Atru.chr3.744' => 'acertr', 'Atru.chr6.1870' => 'acertr', 'Atru.chr9.2515' => 'acertr', 'AUR62004120' => 'cqu', 'AUR62005667' => 'cqu', 'AUR62007634' => 'cqu', 'AUR62008186' => 'cqu', 'AUR62008187' => 'cqu', 'AUR62008188' => 'cqu', 'AUR62027954' => 'cqu', 'AUR62028766' => 'cqu', 'AUR62028767' => 'cqu', 'AUR62028768' => 'cqu', 'AUR62028886' => 'cqu', 'AUR62029563' => 'cqu', 'AUR62038832' => 'cqu', 'BcaB01g04149' => 'bca', 'BcaB03g12940' => 'bca', 'BcaB03g13090' => 'bca', 'BcaB03g14466' => 'bca', 'BcaB05g24035' => 'bca', 'BcaC01g06050' => 'bca', 'BcaC04g19148' => 'bca', 'BcaC04g20761' => 'bca', 'BcaC06g32845' => 'bca', 'BcaC07g41274' => 'bca', 'BcaC09g50827' => 'bca', 'BcaNung00741' => 'bca', 'BcaNung00742' => 'bca', 'BcaNung01859' => 'bca', 'BcaNung03985' => 'bca', 'BcaNung03989' => 'bca', 'BcaNung05661' => 'bca', 'BolC1t00257H' => 'bol', 'BolC1t01956H' => 'bol', 'BolC2t06534H' => 'bol', 'BolC3t14334H' => 'bol', 'BolC5t30451H' => 'bol', 'BolC7t45880H' => 'bol', 'BolC7t46586H' => 'bol', 'BolC8t49301H' => 'bol', 'BolC8t51837H' => 'bol', 'BolC9t56822H' => 'bol', 'BolC9t59235H' => 'bol', 'BraA01t00234Z' => 'bra', 'BraA01t01563Z' => 'bra', 'BraA02t05147Z' => 'bra', 'BraA03t10947Z' => 'bra', 'BraA03t14633Z' => 'bra', 'BraA08t35112Z' => 'bra', 'BraA09t41330Z' => 'bra', 'BraA10t44570Z' => 'bra', 'C01p02670' => 'bna', 'C01p20260' => 'bna', 'C02p05890' => 'bna', 'C03p19530' => 'bna', 'C05p17470' => 'bna', 'C07p53900' => 'bna', 'C07p61630' => 'bna', 'C08p16800' => 'bna', 'C08p42810' => 'bna', 'C09p39480' => 'bna', 'C09p63980' => 'bna', 'CAN.G1001.7' => 'can', 'CAN.G1034.55' => 'can', 'CAN.G143.7' => 'can', 'CAN.G3340.1' => 'can', 'CAN.G358.19' => 'can', 'CAN.G373.2' => 'can', 'CAN.G674.16' => 'can', 'CAN.G674.17' => 'can', 'CAN.G674.18' => 'can', 'CAN.G732.2' => 'can', 'CAN.G732.3' => 'can', 'CAN.G993.39' => 'can', 'CANSAT01G2052' => 'cansat', 'CANSAT80G0070' => 'cansat', 'CANSAT80G0483' => 'cansat', 'CANSAT80G0625' => 'cansat', 'CARHR019690' => 'chi', 'CARHR080280' => 'chi', 'CARHR152750' => 'chi', 'CARHR152760' => 'chi', 'CARHR152770' => 'chi', 'CARHR200340' => 'chi', 'CARHR232370' => 'chi', 'CARHR244670' => 'chi', 'CARHR244680' => 'chi', 'CARHR257520' => 'chi', 'Carub.0001s1872' => 'cru', 'Carub.0006s1130' => 'cru', 'Carub.0007s0396' => 'cru', 'Carub.0007s0397' => 'cru', 'Carub.0007s1608' => 'cru', 'Carub.0008s1068' => 'cru', 'Carub.0008s1077' => 'cru', 'Ca_16158_v3' => 'car', 'Ca_17571_v3' => 'car', 'Ca_21936_v3' => 'car', 'Ca_22350_v3' => 'car', 'CBR_g22445' => 'cbr', 'CBR_g26290' => 'cbr', 'Cc04_g09610' => 'ccan', 'Cc04_g12280' => 'ccan', 'Cc07_g10230' => 'ccan', 'CDE02G0093' => 'cde', 'CDE02G0701' => 'cde', 'CDE04G1050' => 'cde', 'CDE05G1833' => 'cde', 'CDE05G3058' => 'cde', 'CDE05G3380' => 'cde', 'CDE06G0536' => 'cde', 'Cfa006923' => 'cfa', 'Cfa009402' => 'cfa', 'Cfa018751' => 'cfa', 'Cfa019164' => 'cfa', 'Cfa022935' => 'cfa', 'Ciclev10019081m.g' => 'ccl', 'Ciclev10025076m.g' => 'ccl', 'Ciclev10030712m.g' => 'ccl', 'Ciclev10033760m.g' => 'ccl', 'CiPaw.05G105600' => 'cil', 'CiPaw.08G136700' => 'cil', 'CiPaw.11G003900' => 'cil', 'CiPaw.11G023700' => 'cil', 'CiPaw.12G003700' => 'cil', 'ClCG06G017100' => 'cla', 'ClCG06G018110' => 'cla', 'ClCG07G008800' => 'cla', 'ClCG07G015330' => 'cla', 'COL.COLO4_13698' => 'col', 'COL.COLO4_16659' => 'col', 'COL.COLO4_21986' => 'col', 'COL.COLO4_24049' => 'col', 'COL.COLO4_29061' => 'col', 'COL.COLO4_29075' => 'col', 'COL.COLO4_30094' => 'col', 'Cpa.g.c33689' => 'cpa', 'Cpa.g.sc108.39' => 'cpa', 'Cpa.g.sc108.41' => 'cpa', 'Cpa.g.sc1163.1' => 'cpa', 'Cpa.g.sc4.155' => 'cpa', 'Cpa.g.sc6.194' => 'cpa', 'CsaV3_1G000340' => 'csa', 'CsaV3_1G001400' => 'csa', 'CsaV3_4G002220' => 'csa', 'CsaV3_4G005370' => 'csa', 'CSS0007487' => 'camsi', 'CSS0008066' => 'camsi', 'CSS0009120' => 'camsi', 'CSS0015512' => 'camsi', 'CSS0022409' => 'camsi', 'CSS0025358' => 'camsi', 'CSS0044547' => 'camsi', 'DCAR_013057' => 'dca', 'DCAR_015058' => 'dca', 'DCAR_016027' => 'dca', 'DCAR_017327' => 'dca', 'DCAR_020743' => 'dca', 'DCAR_026157' => 'dca', 'DCAR_032339' => 'dca', 'DCAR_032340' => 'dca', 'Dinv11200' => 'din', 'Dinv11201' => 'din', 'Dinv20631' => 'din', 'Dinv23182' => 'din', 'Dinv33466' => 'din', 'Dinv33583' => 'din', 'Dinv38565' => 'din', 'Duzib068G0200' => 'dzi', 'Duzib147G0132' => 'dzi', 'Duzib147G0635' => 'dzi', 'Duzib205G1670' => 'dzi', 'Duzib251G0606' => 'dzi', 'ECA232G3336' => 'eca', 'ECA232G3763' => 'eca', 'ECA232G4845' => 'eca', 'ECA234G1607' => 'eca', 'ECA246G0932' => 'eca', 'ECA247G0781' => 'eca', 'ECA247G1932' => 'eca', 'ECA247G2079' => 'eca', 'ECA247G3338' => 'eca', 'ECA247G4115' => 'eca', 'EL10Ac3g06552' => 'bvu', 'EL10Ac5g10721' => 'bvu', 'EL10Ac5g10722' => 'bvu', 'EL10Ac5g10723' => 'bvu', 'EL10Ac5g11361' => 'bvu', 'EL10Ac6g13553' => 'bvu', 'EL10As8g23872' => 'bvu', 'Eucgr.B00250' => 'egr', 'Eucgr.B00251' => 'egr', 'Eucgr.B03533' => 'egr', 'Eucgr.I02381' => 'egr', 'Eucgr.K02700' => 'egr', 'FAN02G0174' => 'fan', 'FAN02G3146' => 'fan', 'FAN04G1672' => 'fan', 'FAN04G2273' => 'fan', 'FAN05G2791' => 'fan', 'FAN05G4035' => 'fan', 'FAN07G0834' => 'fan', 'FAN08G1198' => 'fan', 'FAN09G4182' => 'fan', 'FAN12G0496' => 'fan', 'FAN13G1027' => 'fan', 'FAN13G2951' => 'fan', 'FAN14G0705' => 'fan', 'FAN14G0720' => 'fan', 'FAN17G0201' => 'fan', 'FAN17G2665' => 'fan', 'FAN18G1456' => 'fan', 'FAN18G1525' => 'fan', 'FAN18G3500' => 'fan', 'FAN28G2670' => 'fan', 'FvH4_1g12391' => 'fve', 'FvH4_4g23220' => 'fve', 'FvH4_5g08810' => 'fve', 'FvH4_5g28960' => 'fve', 'FvH4_6g42820' => 'fve', 'FvH4_6g51110' => 'fve', 'Glyma.02G051802' => 'gma', 'Glyma.04G185300' => 'gma', 'Glyma.05G202900' => 'gma', 'Glyma.08G010300' => 'gma', 'Glyma.16G131900' => 'gma', 'Glyma.17G087900' => 'gma', 'Gohir.A07G048600' => 'ghi', 'Gohir.A11G179000' => 'ghi', 'Gohir.A12G140900' => 'ghi', 'Gohir.A12G140950' => 'ghi', 'Gohir.A12G191700' => 'ghi', 'Gohir.A13G086300' => 'ghi', 'Gohir.D07G052900' => 'ghi', 'Gohir.D11G186600' => 'ghi', 'Gohir.D12G145575' => 'ghi', 'Gohir.D12G145650' => 'ghi', 'Gohir.D12G145725' => 'ghi', 'Gohir.D12G194050' => 'ghi', 'Gohir.D13G091800' => 'ghi', 'Gorai.001G055900' => 'gra', 'Gorai.007G198400' => 'gra', 'Gorai.008G157000' => 'gra', 'Gorai.008G157100' => 'gra', 'Gorai.008G208700' => 'gra', 'Gorai.010G138700' => 'gra', 'GSVIVG01000977001' => 'vvi', 'GSVIVG01007708001' => 'vvi', 'GSVIVG01008587001' => 'vvi', 'GSVIVG01018849001' => 'vvi', 'GSVIVG01032432001' => 'vvi', 'HanXRQChr02g0034131' => 'han', 'HanXRQChr02g0035981' => 'han', 'HanXRQChr02g0035991' => 'han', 'HanXRQChr05g0155611' => 'han', 'HanXRQChr05g0155621' => 'han', 'HanXRQChr08g0236501' => 'han', 'HanXRQChr09g0261321' => 'han', 'HanXRQChr09g0272081' => 'han', 'HanXRQChr10g0310741' => 'han', 'HanXRQChr11g0325591' => 'han', 'HanXRQChr12g0385691' => 'han', 'HanXRQChr13g0387801' => 'han', 'HanXRQChr15g0463011' => 'han', 'Haze_03826' => 'cav', 'Haze_03827' => 'cav', 'Haze_07183' => 'cav', 'Haze_07537' => 'cav', 'Haze_07539' => 'cav', 'Haze_12461' => 'cav', 'Haze_16115' => 'cav', 'Haze_16808' => 'cav', 'Haze_18531' => 'cav', 'Hma1.2p1_0046F.1_g026700' => 'hma', 'Hma1.2p1_0046F.1_g026710' => 'hma', 'Hma1.2p1_0168F.1_g074340' => 'hma', 'Hma1.2p1_0266F.1_g107030' => 'hma', 'Hma1.2p1_0266F.1_g107060' => 'hma', 'Hma1.2p1_0275F.1_g110510' => 'hma', 'Hma1.2p1_0592F.1_g185490' => 'hma', 'Hma1.2p1_0592F.1_g185500' => 'hma', 'Hma1.2p1_0592F.1_g185510' => 'hma', 'Hma1.2p1_0592F.1_g185520' => 'hma', 'Hma1.2p1_0592F.1_g185530' => 'hma', 'Hma1.2p1_0818F.1_g223450' => 'hma', 'HPP92_009708' => 'vpl', 'HPP92_009793' => 'vpl', 'HPP92_009796' => 'vpl', 'HPP92_009797' => 'vpl', 'HPP92_014940' => 'vpl', 'HPP92_014988' => 'vpl', 'Hund02463' => 'sun', 'Hund02760' => 'sun', 'Hund05071' => 'sun', 'Hund10108' => 'sun', 'Hund11204' => 'sun', 'Hund14016' => 'sun', 'Hund16464' => 'sun', 'Lalb_Chr09g0333391' => 'lal', 'Lalb_Chr11g0070461' => 'lal', 'Lalb_Chr12g0201671' => 'lal', 'Lalb_Chr13g0297161' => 'lal', 'Lj1g0002823' => 'lja', 'Lj3C1074T6' => 'lonja', 'Lj4A212T28' => 'lonja', 'Lj4g0005516' => 'lja', 'Lj4g0013705' => 'lja', 'Lj4g0027865' => 'lja', 'Lj5C92G16' => 'lonja', 'Lj5C92T12' => 'lonja', 'Lj7C596T3' => 'lonja', 'Lj9A446G59' => 'lonja', 'Lj9A482G21' => 'lonja', 'Lsat_1_v5_gn_1_28261' => 'lsa', 'Lsat_1_v5_gn_1_28281' => 'lsa', 'Lsat_1_v5_gn_1_32721' => 'lsa', 'Lsat_1_v5_gn_4_151760' => 'lsa', 'Lsat_1_v5_gn_4_2120' => 'lsa', 'Lsat_1_v5_gn_4_75761' => 'lsa', 'Lsat_1_v5_gn_5_10920' => 'lsa', 'Manes.02G099900' => 'mes', 'Manes.11G096200' => 'mes', 'Manes.12G007200' => 'mes', 'Manes.14G048300' => 'mes', 'Manes.17G114700' => 'mes', 'Mapoly0002s0070' => 'mpo', 'Mapoly0029s0099' => 'mpo', 'MBI07_g24742_MAGBIO' => 'mbi', 'MBI10_g27988_MAGBIO' => 'mbi', 'MBI11_g13057_MAGBIO' => 'mbi', 'MD02G1137200' => 'mdo', 'MD06G1137200' => 'mdo', 'MD07G1122300' => 'mdo', 'MD09G1078200' => 'mdo', 'MD13G1123700' => 'mdo', 'MD14G1151900' => 'mdo', 'MD17G1030900' => 'mdo', 'MD17G1068200' => 'mdo', 'MD17G1068600' => 'mdo', 'Medtr3g077540' => 'mtr', 'Medtr4g105530' => 'mtr', 'Medtr8g076580' => 'mtr', 'Medtr8g076590' => 'mtr', 'Medtr8g096410' => 'mtr', 'MELO3C016411.2' => 'cme', 'MELO3C017780.2' => 'cme', 'MELO3C022560.2' => 'cme', 'MELO3C026187.2' => 'cme', 'MELO3C026286.2' => 'cme', 'MELO3C032854.2' => 'cme', 'Migut.H02495' => 'egut', 'Migut.I00561' => 'egut', 'Migut.K01015' => 'egut', 'Migut.K01016' => 'egut', 'Migut.L00743' => 'egut', 'Migut.L00744' => 'egut', 'Migut.L00746' => 'egut', 'Migut.L00798' => 'egut', 'Migut.L00799' => 'egut', 'Migut.N02096' => 'egut', 'MSTRG.11259' => 'ama', 'MSTRG.23142' => 'ama', 'MSTRG.2499' => 'ama', 'Nitab4.5_0000003g0730' => 'nta', 'Nitab4.5_0000137g0020' => 'nta', 'Nitab4.5_0000721g0210' => 'nta', 'Nitab4.5_0000723g0050' => 'nta', 'Nitab4.5_0000913g0070' => 'nta', 'Nitab4.5_0001332g0040' => 'nta', 'Nitab4.5_0001771g0050' => 'nta', 'Nitab4.5_0001918g0050' => 'nta', 'Nitab4.5_0002686g0030' => 'nta', 'Nitab4.5_0003156g0020' => 'nta', 'Nitab4.5_0003383g0040' => 'nta', 'Nitab4.5_0003918g0010' => 'nta', 'Nitab4.5_0006760g0010' => 'nta', 'Nn1g05981' => 'nnu', 'Nn1g06288' => 'nnu', 'Nn3g16371' => 'nnu', 'Nn3g16786' => 'nnu', 'Nn4g22232' => 'nnu', 'Oeu005144.1' => 'oeu', 'Oeu005145.1' => 'oeu', 'Oeu011348.1' => 'oeu', 'Oeu016415.1' => 'oeu', 'Oeu023501.1' => 'oeu', 'Oeu044473.1' => 'oeu', 'Oeu048892.2' => 'oeu', 'Os01g0549200' => 'osa', 'Os02g0469300' => 'osa', 'Os04g0311100' => 'osa', 'Os06g0474900' => 'osa', 'Os10g0181700' => 'osa', 'Os11g0454800' => 'osa', 'Peaxi162Scf00037g00714' => 'pax', 'Peaxi162Scf00084g01217' => 'pax', 'Peaxi162Scf00257g00217' => 'pax', 'Peaxi162Scf00516g00215' => 'pax', 'Peaxi162Scf00689g00123' => 'pax', 'PGR044G2719' => 'pgr', 'PGR083G1360' => 'pgr', 'PGR102G2849' => 'pgr', 'PGR119G2534' => 'pgr', 'PGSC0003DMG400003538' => 'stu', 'PGSC0003DMG400028138' => 'stu', 'PGSC0003DMG400031732' => 'stu', 'PGSC0003DMG400038165' => 'stu', 'Phvul.002G284600' => 'pvu', 'Phvul.003G258200' => 'pvu', 'Phvul.009G176500' => 'pvu', 'Potri.003G167201' => 'ptr', 'Potri.005G118400' => 'ptr', 'Potri.012G089000' => 'ptr', 'Potri.012G102800' => 'ptr', 'Potri.015G079400' => 'ptr', 'Potri.015G100900' => 'ptr', 'Pp3c14_9810' => 'ppa', 'Pp3c15_10450' => 'ppa', 'Pp3c20_19150' => 'ppa', 'Pp3c23_12740' => 'ppa', 'Pp3c23_6310' => 'ppa', 'Pp3c24_3720' => 'ppa', 'Pp3c27_2580' => 'ppa', 'Pp3c9_8990' => 'ppa', 'PRCOL_00002854' => 'pco', 'Prupe.1G221200' => 'ppe', 'Prupe.3G289000' => 'ppe', 'Prupe.5G147000' => 'ppe', 'Prupe.6G157300' => 'ppe', 'Prupe.7G163400' => 'ppe', 'Psat0s2177g0040' => 'psa', 'Psat3g174760' => 'psa', 'Psat3g192160' => 'psa', 'Psat4g058520' => 'psa', 'Psat4g096840' => 'psa', 'Psat7g037320' => 'psa', 'PSO017G1274' => 'pso', 'PSO017G5166' => 'pso', 'PSO063G4558' => 'pso', 'PSO170G4458' => 'pso', 'PSO170G5005' => 'pso', 'PSO210G6156' => 'pso', 'PSO210G6635' => 'pso', 'PSO210G7397' => 'pso', 'PSO210G7700' => 'pso', 'PSO455G0035' => 'pso', 'PSO455G0180' => 'pso', 'PSO478G4515' => 'pso', 'PSO832G1305' => 'pso', 'PSO832G3489' => 'pso', 'QL02p075247' => 'qlo', 'QL03p051148' => 'qlo', 'QL05p010313' => 'qlo', 'QL06p034627' => 'qlo', 'QL10p001889' => 'qlo', 'QL10p010846' => 'qlo', 'RcHm_v2.0_Chr1g0350621' => 'rch', 'RcHm_v2.0_Chr1g0350641' => 'rch', 'RcHm_v2.0_Chr2g0092891' => 'rch', 'RcHm_v2.0_Chr2g0100251' => 'rch', 'RcHm_v2.0_Chr2g0158661' => 'rch', 'RcHm_v2.0_Chr2g0172741' => 'rch', 'RcHm_v2.0_Chr4g0429571' => 'rch', 'RcHm_v2.0_Chr5g0042471' => 'rch', 'RcHm_v2.0_Chr7g0189451' => 'rch', 'Rhsim08G0052000' => 'rsi', 'Rhsim08G0174400' => 'rsi', 'Rhsim08G0193200' => 'rsi', 'Rhsim10G0214800' => 'rsi', 'Rhsim10G0214900' => 'rsi', 'Rhsim10G0215000' => 'rsi', 'Rhsim12G0022900' => 'rsi', 'Rhsim12G0177500' => 'rsi', 'Rhsim12G0177700' => 'rsi', 'Sabra03G0122600' => 'sbr', 'Sabra05G0097400' => 'sbr', 'Sabra12G0064100' => 'sbr', 'Sabra15G0121300' => 'sbr', 'SalBow2G0642' => 'sbo', 'SalBow5G2667' => 'sbo', 'SalBow5G4873' => 'sbo', 'SalBow8G2395' => 'sbo', 'Sc03g0003290' => 'sci', 'Sc10g0010130' => 'sci', 'Sc22g0003650' => 'sci', 'Sed0001603' => 'sed', 'Sed0004259' => 'sed', 'Sed0006789' => 'sed', 'Sed0011838' => 'sed', 'Sed0012964' => 'sed', 'Sed0016383' => 'sed', 'Sed0019010' => 'sed', 'Sed0020188' => 'sed', 'SEGI_04702' => 'sgi', 'SEGI_17231' => 'sgi', 'SEGI_18877' => 'sgi', 'SEGI_25196' => 'sgi', 'SEGI_25515' => 'sgi', 'SEGI_28445' => 'sgi', 'SEGI_37452' => 'sgi', 'SGA_v2.0_scaffold188G40336' => 'sas', 'SGA_v2.0_scaffold228G43247' => 'sas', 'SGA_v2.0_scaffold280G46853' => 'sas', 'SGA_v2.0_scaffold34G13808' => 'sas', 'SGA_v2.0_scaffold40G15576' => 'sas', 'SGA_v2.0_scaffold611G53188' => 'sas', 'SGA_v2.0_scaffold78G25461' => 'sas', 'SGA_v2.0_scaffold90G27888' => 'sas', 'SHI08601' => 'shi', 'SHI08606' => 'shi', 'SHI17117' => 'shi', 'SHI17119' => 'shi', 'SMO118G0201' => 'smo', 'SMO169G0247' => 'smo', 'SMO176G0006' => 'smo', 'SMO176G0015' => 'smo', 'SMO202G0006' => 'smo', 'SMO240G0050' => 'smo', 'SMO286G0009' => 'smo', 'SMO338G0033' => 'smo', 'SMO356G0533' => 'smo', 'SMO364G0382' => 'smo', 'SMO367G0166' => 'smo', 'SMO367G1098' => 'smo', 'Solyc01g009920.3' => 'sly', 'Solyc01g099300.3' => 'sly', 'Solyc02g084700.3' => 'sly', 'Solyc03g097520.3' => 'sly', 'Solyc06g071580.3' => 'sly', 'Solyc10g081760.3' => 'sly', 'Sopen01g005480' => 'spe', 'Sopen01g042850' => 'spe', 'Sopen02g029370' => 'spe', 'Sopen03g028280' => 'spe', 'Sopen06g027870' => 'spe', 'Sopen10g032270' => 'spe', 'Sp5g18180' => 'spa', 'Sp6g12880' => 'spa', 'Sp6g30850' => 'spa', 'Sp7g22960' => 'spa', 'Sp7g34010' => 'spa', 'SpUn1326_0010' => 'spa', 'TAR371G0242' => 'tar', 'TAR622G0638' => 'tar', 'TAR628G1548' => 'tar', 'TAR629G1079' => 'tar', 'TAR629G3413' => 'tar', 'THA.LOC104804249' => 'tha', 'THA.LOC104808315' => 'tha', 'THA.LOC104809238' => 'tha', 'THA.LOC104825484' => 'tha', 'Thecc.01G025500' => 'tca', 'Thecc.03G015800' => 'tca', 'Thecc.03G018000' => 'tca', 'Thecc.03G134800' => 'tca', 'Thecc.04G014700' => 'tca', 'Thhalv10006991m.g' => 'esa', 'Thhalv10012707m.g' => 'esa', 'Thhalv10015739m.g' => 'esa', 'Thhalv10024553m.g' => 'esa', 'Thhalv10024673m.g' => 'esa', 'Thhalv10029187m.g' => 'esa', 'TPR.G12971' => 'tpr', 'TPR.G29396' => 'tpr', 'TPR.G33376' => 'tpr', 'TPR.G35508' => 'tpr', 'TPR.G35516' => 'tpr', 'TPR.G37317' => 'tpr', 'TPR.G37389' => 'tpr', 'TPR.G37523' => 'tpr', 'TPR.G559' => 'tpr', 'TWI14G0070' => 'twi', 'TWI14G0729' => 'twi', 'TWI18G0596' => 'twi', 'TWI39G0780' => 'twi', 'TWI39G0850' => 'twi', 'TWI73G1052' => 'twi', 'unitig_52.g17485' => 'ugi', 'unitig_61.g26355' => 'ugi', 'vmacro01040' => 'vma', 'vmacro16731' => 'vma', 'vmacro18270' => 'vma', 'vmacro19142' => 'vma', 'vmacro19407' => 'vma', 'vmacro19408' => 'vma', 'vmacro21899' => 'vma', 'vmacro21900' => 'vma', 'vmacro21901' => 'vma', 'VMungo0251G0490' => 'vmu', 'VMungo0251G1748' => 'vmu', 'VMungo1309G0421' => 'vmu', 'Zm00001eb086500' => 'zma', 'Zm00001eb150680' => 'zma', 'Zm00001eb162330' => 'zma', 'Zm00001eb203130' => 'zma', 'Zm00001eb369480' => 'zma', 'Zm00001eb382340' => 'zma', 'Zm00001eb416360' => 'zma' ) $gf_id = 'HOM05D000902' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000902' ) $data_identifier = 'HOM05D000902' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 13, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 10, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 6, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 9, 'hma' => (int) 12, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 4, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 6, 'ppa' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 6, 'rch' => (int) 9, 'rsi' => (int) 9, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 12, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 3, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416360' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000902', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '663', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02470' => 'bna', 'A01p16260' => 'bna', 'A02p01680' => 'bna', 'A03p16600' => 'bna', 'A03p55660' => 'bna', 'A03p64160' => 'bna', 'A03p64170' => 'bna', 'A08p31900' => 'bna', 'A09p59530' => 'bna', 'A10p08230' => 'bna', 'A10p25090' => 'bna', 'Aa31LG3G7100' => 'aar', 'Aa31LG3G7110' => 'aar', 'Aa31LG6G13160' => 'aar', 'Aa31LG7G10770' => 'aar', 'Aa31LG7G3830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2723' => 'aag', 'Actinidia08045' => 'ach', 'Actinidia08888' => 'ach', 'Actinidia18333' => 'ach', 'Actinidia19334' => 'ach', 'Actinidia25552' => 'ach', 'Actinidia26089' => 'ach', 'Actinidia30615' => 'ach', 'Actinidia30616' => 'ach', 'Actinidia33083' => 'ach', 'Actinidia35762' => 'ach', 'Ah.02g110620' => 'amhyb', 'Ah.11g046390' => 'amhyb', 'AL1G31670' => 'aly', 'AL6G23730' => 'aly', 'AL7G14740' => 'aly', 'AL7G14750' => 'aly', 'AL7G14760' => 'aly', 'AL7G28220' => 'aly', 'AL8G24940' => 'aly', 'Aqoxy3G01665' => 'aox', 'Aqoxy3G02853' => 'aox', 'Aqoxy5G01513' => 'aox', 'Aqoxy5G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8SKA4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ75LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKDA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0LJZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7REX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZP4YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWX7I5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2QKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS0L9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPCD8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q161UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC7XCF' => 'arhy', 'AT1G19100' => 'ath', 'AT4G24970' => 'ath', 'AT4G36270' => 'ath', 'AT4G36280' => 'ath', 'AT4G36290' => 'ath', 'AT5G13130' => 'ath', 'AT5G50780' => 'ath', 'ATR0582G266' => 'atr', 'ATR0661G195' => 'atr', 'ATR1152G031' => 'atr', 'Atru.chr11.2382' => 'acertr', 'Atru.chr12.2337' => 'acertr', 'Atru.chr3.744' => 'acertr', 'Atru.chr6.1870' => 'acertr', 'Atru.chr9.2515' => 'acertr', 'AUR62004120' => 'cqu', 'AUR62005667' => 'cqu', 'AUR62007634' => 'cqu', 'AUR62008186' => 'cqu', 'AUR62008187' => 'cqu', 'AUR62008188' => 'cqu', 'AUR62027954' => 'cqu', 'AUR62028766' => 'cqu', 'AUR62028767' => 'cqu', 'AUR62028768' => 'cqu', 'AUR62028886' => 'cqu', 'AUR62029563' => 'cqu', 'AUR62038832' => 'cqu', 'BcaB01g04149' => 'bca', 'BcaB03g12940' => 'bca', 'BcaB03g13090' => 'bca', 'BcaB03g14466' => 'bca', 'BcaB05g24035' => 'bca', 'BcaC01g06050' => 'bca', 'BcaC04g19148' => 'bca', 'BcaC04g20761' => 'bca', 'BcaC06g32845' => 'bca', 'BcaC07g41274' => 'bca', 'BcaC09g50827' => 'bca', 'BcaNung00741' => 'bca', 'BcaNung00742' => 'bca', 'BcaNung01859' => 'bca', 'BcaNung03985' => 'bca', 'BcaNung03989' => 'bca', 'BcaNung05661' => 'bca', 'BolC1t00257H' => 'bol', 'BolC1t01956H' => 'bol', 'BolC2t06534H' => 'bol', 'BolC3t14334H' => 'bol', 'BolC5t30451H' => 'bol', 'BolC7t45880H' => 'bol', 'BolC7t46586H' => 'bol', 'BolC8t49301H' => 'bol', 'BolC8t51837H' => 'bol', 'BolC9t56822H' => 'bol', 'BolC9t59235H' => 'bol', 'BraA01t00234Z' => 'bra', 'BraA01t01563Z' => 'bra', 'BraA02t05147Z' => 'bra', 'BraA03t10947Z' => 'bra', 'BraA03t14633Z' => 'bra', 'BraA08t35112Z' => 'bra', 'BraA09t41330Z' => 'bra', 'BraA10t44570Z' => 'bra', 'C01p02670' => 'bna', 'C01p20260' => 'bna', 'C02p05890' => 'bna', 'C03p19530' => 'bna', 'C05p17470' => 'bna', 'C07p53900' => 'bna', 'C07p61630' => 'bna', 'C08p16800' => 'bna', 'C08p42810' => 'bna', 'C09p39480' => 'bna', 'C09p63980' => 'bna', 'CAN.G1001.7' => 'can', 'CAN.G1034.55' => 'can', 'CAN.G143.7' => 'can', 'CAN.G3340.1' => 'can', 'CAN.G358.19' => 'can', 'CAN.G373.2' => 'can', 'CAN.G674.16' => 'can', 'CAN.G674.17' => 'can', 'CAN.G674.18' => 'can', 'CAN.G732.2' => 'can', 'CAN.G732.3' => 'can', 'CAN.G993.39' => 'can', 'CANSAT01G2052' => 'cansat', 'CANSAT80G0070' => 'cansat', 'CANSAT80G0483' => 'cansat', 'CANSAT80G0625' => 'cansat', 'CARHR019690' => 'chi', 'CARHR080280' => 'chi', 'CARHR152750' => 'chi', 'CARHR152760' => 'chi', 'CARHR152770' => 'chi', 'CARHR200340' => 'chi', 'CARHR232370' => 'chi', 'CARHR244670' => 'chi', 'CARHR244680' => 'chi', 'CARHR257520' => 'chi', 'Carub.0001s1872' => 'cru', 'Carub.0006s1130' => 'cru', 'Carub.0007s0396' => 'cru', 'Carub.0007s0397' => 'cru', 'Carub.0007s1608' => 'cru', 'Carub.0008s1068' => 'cru', 'Carub.0008s1077' => 'cru', 'Ca_16158_v3' => 'car', 'Ca_17571_v3' => 'car', 'Ca_21936_v3' => 'car', 'Ca_22350_v3' => 'car', 'CBR_g22445' => 'cbr', 'CBR_g26290' => 'cbr', 'Cc04_g09610' => 'ccan', 'Cc04_g12280' => 'ccan', 'Cc07_g10230' => 'ccan', 'CDE02G0093' => 'cde', 'CDE02G0701' => 'cde', 'CDE04G1050' => 'cde', 'CDE05G1833' => 'cde', 'CDE05G3058' => 'cde', 'CDE05G3380' => 'cde', 'CDE06G0536' => 'cde', 'Cfa006923' => 'cfa', 'Cfa009402' => 'cfa', 'Cfa018751' => 'cfa', 'Cfa019164' => 'cfa', 'Cfa022935' => 'cfa', 'Ciclev10019081m.g' => 'ccl', 'Ciclev10025076m.g' => 'ccl', 'Ciclev10030712m.g' => 'ccl', 'Ciclev10033760m.g' => 'ccl', 'CiPaw.05G105600' => 'cil', 'CiPaw.08G136700' => 'cil', 'CiPaw.11G003900' => 'cil', 'CiPaw.11G023700' => 'cil', 'CiPaw.12G003700' => 'cil', 'ClCG06G017100' => 'cla', 'ClCG06G018110' => 'cla', 'ClCG07G008800' => 'cla', 'ClCG07G015330' => 'cla', 'COL.COLO4_13698' => 'col', 'COL.COLO4_16659' => 'col', 'COL.COLO4_21986' => 'col', 'COL.COLO4_24049' => 'col', 'COL.COLO4_29061' => 'col', 'COL.COLO4_29075' => 'col', 'COL.COLO4_30094' => 'col', 'Cpa.g.c33689' => 'cpa', 'Cpa.g.sc108.39' => 'cpa', 'Cpa.g.sc108.41' => 'cpa', 'Cpa.g.sc1163.1' => 'cpa', 'Cpa.g.sc4.155' => 'cpa', 'Cpa.g.sc6.194' => 'cpa', 'CsaV3_1G000340' => 'csa', 'CsaV3_1G001400' => 'csa', 'CsaV3_4G002220' => 'csa', 'CsaV3_4G005370' => 'csa', 'CSS0007487' => 'camsi', 'CSS0008066' => 'camsi', 'CSS0009120' => 'camsi', 'CSS0015512' => 'camsi', 'CSS0022409' => 'camsi', 'CSS0025358' => 'camsi', 'CSS0044547' => 'camsi', 'DCAR_013057' => 'dca', 'DCAR_015058' => 'dca', 'DCAR_016027' => 'dca', 'DCAR_017327' => 'dca', 'DCAR_020743' => 'dca', 'DCAR_026157' => 'dca', 'DCAR_032339' => 'dca', 'DCAR_032340' => 'dca', 'Dinv11200' => 'din', 'Dinv11201' => 'din', 'Dinv20631' => 'din', 'Dinv23182' => 'din', 'Dinv33466' => 'din', 'Dinv33583' => 'din', 'Dinv38565' => 'din', 'Duzib068G0200' => 'dzi', 'Duzib147G0132' => 'dzi', 'Duzib147G0635' => 'dzi', 'Duzib205G1670' => 'dzi', 'Duzib251G0606' => 'dzi', 'ECA232G3336' => 'eca', 'ECA232G3763' => 'eca', 'ECA232G4845' => 'eca', 'ECA234G1607' => 'eca', 'ECA246G0932' => 'eca', 'ECA247G0781' => 'eca', 'ECA247G1932' => 'eca', 'ECA247G2079' => 'eca', 'ECA247G3338' => 'eca', 'ECA247G4115' => 'eca', 'EL10Ac3g06552' => 'bvu', 'EL10Ac5g10721' => 'bvu', 'EL10Ac5g10722' => 'bvu', 'EL10Ac5g10723' => 'bvu', 'EL10Ac5g11361' => 'bvu', 'EL10Ac6g13553' => 'bvu', 'EL10As8g23872' => 'bvu', 'Eucgr.B00250' => 'egr', 'Eucgr.B00251' => 'egr', 'Eucgr.B03533' => 'egr', 'Eucgr.I02381' => 'egr', 'Eucgr.K02700' => 'egr', 'FAN02G0174' => 'fan', 'FAN02G3146' => 'fan', 'FAN04G1672' => 'fan', 'FAN04G2273' => 'fan', 'FAN05G2791' => 'fan', 'FAN05G4035' => 'fan', 'FAN07G0834' => 'fan', 'FAN08G1198' => 'fan', 'FAN09G4182' => 'fan', 'FAN12G0496' => 'fan', 'FAN13G1027' => 'fan', 'FAN13G2951' => 'fan', 'FAN14G0705' => 'fan', 'FAN14G0720' => 'fan', 'FAN17G0201' => 'fan', 'FAN17G2665' => 'fan', 'FAN18G1456' => 'fan', 'FAN18G1525' => 'fan', 'FAN18G3500' => 'fan', 'FAN28G2670' => 'fan', 'FvH4_1g12391' => 'fve', 'FvH4_4g23220' => 'fve', 'FvH4_5g08810' => 'fve', 'FvH4_5g28960' => 'fve', 'FvH4_6g42820' => 'fve', 'FvH4_6g51110' => 'fve', 'Glyma.02G051802' => 'gma', 'Glyma.04G185300' => 'gma', 'Glyma.05G202900' => 'gma', 'Glyma.08G010300' => 'gma', 'Glyma.16G131900' => 'gma', 'Glyma.17G087900' => 'gma', 'Gohir.A07G048600' => 'ghi', 'Gohir.A11G179000' => 'ghi', 'Gohir.A12G140900' => 'ghi', 'Gohir.A12G140950' => 'ghi', 'Gohir.A12G191700' => 'ghi', 'Gohir.A13G086300' => 'ghi', 'Gohir.D07G052900' => 'ghi', 'Gohir.D11G186600' => 'ghi', 'Gohir.D12G145575' => 'ghi', 'Gohir.D12G145650' => 'ghi', 'Gohir.D12G145725' => 'ghi', 'Gohir.D12G194050' => 'ghi', 'Gohir.D13G091800' => 'ghi', 'Gorai.001G055900' => 'gra', 'Gorai.007G198400' => 'gra', 'Gorai.008G157000' => 'gra', 'Gorai.008G157100' => 'gra', 'Gorai.008G208700' => 'gra', 'Gorai.010G138700' => 'gra', 'GSVIVG01000977001' => 'vvi', 'GSVIVG01007708001' => 'vvi', 'GSVIVG01008587001' => 'vvi', 'GSVIVG01018849001' => 'vvi', 'GSVIVG01032432001' => 'vvi', 'HanXRQChr02g0034131' => 'han', 'HanXRQChr02g0035981' => 'han', 'HanXRQChr02g0035991' => 'han', 'HanXRQChr05g0155611' => 'han', 'HanXRQChr05g0155621' => 'han', 'HanXRQChr08g0236501' => 'han', 'HanXRQChr09g0261321' => 'han', 'HanXRQChr09g0272081' => 'han', 'HanXRQChr10g0310741' => 'han', 'HanXRQChr11g0325591' => 'han', 'HanXRQChr12g0385691' => 'han', 'HanXRQChr13g0387801' => 'han', 'HanXRQChr15g0463011' => 'han', 'Haze_03826' => 'cav', 'Haze_03827' => 'cav', 'Haze_07183' => 'cav', 'Haze_07537' => 'cav', 'Haze_07539' => 'cav', 'Haze_12461' => 'cav', 'Haze_16115' => 'cav', 'Haze_16808' => 'cav', 'Haze_18531' => 'cav', 'Hma1.2p1_0046F.1_g026700' => 'hma', 'Hma1.2p1_0046F.1_g026710' => 'hma', 'Hma1.2p1_0168F.1_g074340' => 'hma', 'Hma1.2p1_0266F.1_g107030' => 'hma', 'Hma1.2p1_0266F.1_g107060' => 'hma', 'Hma1.2p1_0275F.1_g110510' => 'hma', 'Hma1.2p1_0592F.1_g185490' => 'hma', 'Hma1.2p1_0592F.1_g185500' => 'hma', 'Hma1.2p1_0592F.1_g185510' => 'hma', 'Hma1.2p1_0592F.1_g185520' => 'hma', 'Hma1.2p1_0592F.1_g185530' => 'hma', 'Hma1.2p1_0818F.1_g223450' => 'hma', 'HPP92_009708' => 'vpl', 'HPP92_009793' => 'vpl', 'HPP92_009796' => 'vpl', 'HPP92_009797' => 'vpl', 'HPP92_014940' => 'vpl', 'HPP92_014988' => 'vpl', 'Hund02463' => 'sun', 'Hund02760' => 'sun', 'Hund05071' => 'sun', 'Hund10108' => 'sun', 'Hund11204' => 'sun', 'Hund14016' => 'sun', 'Hund16464' => 'sun', 'Lalb_Chr09g0333391' => 'lal', 'Lalb_Chr11g0070461' => 'lal', 'Lalb_Chr12g0201671' => 'lal', 'Lalb_Chr13g0297161' => 'lal', 'Lj1g0002823' => 'lja', 'Lj3C1074T6' => 'lonja', 'Lj4A212T28' => 'lonja', 'Lj4g0005516' => 'lja', 'Lj4g0013705' => 'lja', 'Lj4g0027865' => 'lja', 'Lj5C92G16' => 'lonja', 'Lj5C92T12' => 'lonja', 'Lj7C596T3' => 'lonja', 'Lj9A446G59' => 'lonja', 'Lj9A482G21' => 'lonja', 'Lsat_1_v5_gn_1_28261' => 'lsa', 'Lsat_1_v5_gn_1_28281' => 'lsa', 'Lsat_1_v5_gn_1_32721' => 'lsa', 'Lsat_1_v5_gn_4_151760' => 'lsa', 'Lsat_1_v5_gn_4_2120' => 'lsa', 'Lsat_1_v5_gn_4_75761' => 'lsa', 'Lsat_1_v5_gn_5_10920' => 'lsa', 'Manes.02G099900' => 'mes', 'Manes.11G096200' => 'mes', 'Manes.12G007200' => 'mes', 'Manes.14G048300' => 'mes', 'Manes.17G114700' => 'mes', 'Mapoly0002s0070' => 'mpo', 'Mapoly0029s0099' => 'mpo', 'MBI07_g24742_MAGBIO' => 'mbi', 'MBI10_g27988_MAGBIO' => 'mbi', 'MBI11_g13057_MAGBIO' => 'mbi', 'MD02G1137200' => 'mdo', 'MD06G1137200' => 'mdo', 'MD07G1122300' => 'mdo', 'MD09G1078200' => 'mdo', 'MD13G1123700' => 'mdo', 'MD14G1151900' => 'mdo', 'MD17G1030900' => 'mdo', 'MD17G1068200' => 'mdo', 'MD17G1068600' => 'mdo', 'Medtr3g077540' => 'mtr', 'Medtr4g105530' => 'mtr', 'Medtr8g076580' => 'mtr', 'Medtr8g076590' => 'mtr', 'Medtr8g096410' => 'mtr', 'MELO3C016411.2' => 'cme', 'MELO3C017780.2' => 'cme', 'MELO3C022560.2' => 'cme', 'MELO3C026187.2' => 'cme', 'MELO3C026286.2' => 'cme', 'MELO3C032854.2' => 'cme', 'Migut.H02495' => 'egut', 'Migut.I00561' => 'egut', 'Migut.K01015' => 'egut', 'Migut.K01016' => 'egut', 'Migut.L00743' => 'egut', 'Migut.L00744' => 'egut', 'Migut.L00746' => 'egut', 'Migut.L00798' => 'egut', 'Migut.L00799' => 'egut', 'Migut.N02096' => 'egut', 'MSTRG.11259' => 'ama', 'MSTRG.23142' => 'ama', 'MSTRG.2499' => 'ama', 'Nitab4.5_0000003g0730' => 'nta', 'Nitab4.5_0000137g0020' => 'nta', 'Nitab4.5_0000721g0210' => 'nta', 'Nitab4.5_0000723g0050' => 'nta', 'Nitab4.5_0000913g0070' => 'nta', 'Nitab4.5_0001332g0040' => 'nta', 'Nitab4.5_0001771g0050' => 'nta', 'Nitab4.5_0001918g0050' => 'nta', 'Nitab4.5_0002686g0030' => 'nta', 'Nitab4.5_0003156g0020' => 'nta', 'Nitab4.5_0003383g0040' => 'nta', 'Nitab4.5_0003918g0010' => 'nta', 'Nitab4.5_0006760g0010' => 'nta', 'Nn1g05981' => 'nnu', 'Nn1g06288' => 'nnu', 'Nn3g16371' => 'nnu', 'Nn3g16786' => 'nnu', 'Nn4g22232' => 'nnu', 'Oeu005144.1' => 'oeu', 'Oeu005145.1' => 'oeu', 'Oeu011348.1' => 'oeu', 'Oeu016415.1' => 'oeu', 'Oeu023501.1' => 'oeu', 'Oeu044473.1' => 'oeu', 'Oeu048892.2' => 'oeu', 'Os01g0549200' => 'osa', 'Os02g0469300' => 'osa', 'Os04g0311100' => 'osa', 'Os06g0474900' => 'osa', 'Os10g0181700' => 'osa', 'Os11g0454800' => 'osa', 'Peaxi162Scf00037g00714' => 'pax', 'Peaxi162Scf00084g01217' => 'pax', 'Peaxi162Scf00257g00217' => 'pax', 'Peaxi162Scf00516g00215' => 'pax', 'Peaxi162Scf00689g00123' => 'pax', 'PGR044G2719' => 'pgr', 'PGR083G1360' => 'pgr', 'PGR102G2849' => 'pgr', 'PGR119G2534' => 'pgr', 'PGSC0003DMG400003538' => 'stu', 'PGSC0003DMG400028138' => 'stu', 'PGSC0003DMG400031732' => 'stu', 'PGSC0003DMG400038165' => 'stu', 'Phvul.002G284600' => 'pvu', 'Phvul.003G258200' => 'pvu', 'Phvul.009G176500' => 'pvu', 'Potri.003G167201' => 'ptr', 'Potri.005G118400' => 'ptr', 'Potri.012G089000' => 'ptr', 'Potri.012G102800' => 'ptr', 'Potri.015G079400' => 'ptr', 'Potri.015G100900' => 'ptr', 'Pp3c14_9810' => 'ppa', 'Pp3c15_10450' => 'ppa', 'Pp3c20_19150' => 'ppa', 'Pp3c23_12740' => 'ppa', 'Pp3c23_6310' => 'ppa', 'Pp3c24_3720' => 'ppa', 'Pp3c27_2580' => 'ppa', 'Pp3c9_8990' => 'ppa', 'PRCOL_00002854' => 'pco', 'Prupe.1G221200' => 'ppe', 'Prupe.3G289000' => 'ppe', 'Prupe.5G147000' => 'ppe', 'Prupe.6G157300' => 'ppe', 'Prupe.7G163400' => 'ppe', 'Psat0s2177g0040' => 'psa', 'Psat3g174760' => 'psa', 'Psat3g192160' => 'psa', 'Psat4g058520' => 'psa', 'Psat4g096840' => 'psa', 'Psat7g037320' => 'psa', 'PSO017G1274' => 'pso', 'PSO017G5166' => 'pso', 'PSO063G4558' => 'pso', 'PSO170G4458' => 'pso', 'PSO170G5005' => 'pso', 'PSO210G6156' => 'pso', 'PSO210G6635' => 'pso', 'PSO210G7397' => 'pso', 'PSO210G7700' => 'pso', 'PSO455G0035' => 'pso', 'PSO455G0180' => 'pso', 'PSO478G4515' => 'pso', 'PSO832G1305' => 'pso', 'PSO832G3489' => 'pso', 'QL02p075247' => 'qlo', 'QL03p051148' => 'qlo', 'QL05p010313' => 'qlo', 'QL06p034627' => 'qlo', 'QL10p001889' => 'qlo', 'QL10p010846' => 'qlo', 'RcHm_v2.0_Chr1g0350621' => 'rch', 'RcHm_v2.0_Chr1g0350641' => 'rch', 'RcHm_v2.0_Chr2g0092891' => 'rch', 'RcHm_v2.0_Chr2g0100251' => 'rch', 'RcHm_v2.0_Chr2g0158661' => 'rch', 'RcHm_v2.0_Chr2g0172741' => 'rch', 'RcHm_v2.0_Chr4g0429571' => 'rch', 'RcHm_v2.0_Chr5g0042471' => 'rch', 'RcHm_v2.0_Chr7g0189451' => 'rch', 'Rhsim08G0052000' => 'rsi', 'Rhsim08G0174400' => 'rsi', 'Rhsim08G0193200' => 'rsi', 'Rhsim10G0214800' => 'rsi', 'Rhsim10G0214900' => 'rsi', 'Rhsim10G0215000' => 'rsi', 'Rhsim12G0022900' => 'rsi', 'Rhsim12G0177500' => 'rsi', 'Rhsim12G0177700' => 'rsi', 'Sabra03G0122600' => 'sbr', 'Sabra05G0097400' => 'sbr', 'Sabra12G0064100' => 'sbr', 'Sabra15G0121300' => 'sbr', 'SalBow2G0642' => 'sbo', 'SalBow5G2667' => 'sbo', 'SalBow5G4873' => 'sbo', 'SalBow8G2395' => 'sbo', 'Sc03g0003290' => 'sci', 'Sc10g0010130' => 'sci', 'Sc22g0003650' => 'sci', 'Sed0001603' => 'sed', 'Sed0004259' => 'sed', 'Sed0006789' => 'sed', 'Sed0011838' => 'sed', 'Sed0012964' => 'sed', 'Sed0016383' => 'sed', 'Sed0019010' => 'sed', 'Sed0020188' => 'sed', 'SEGI_04702' => 'sgi', 'SEGI_17231' => 'sgi', 'SEGI_18877' => 'sgi', 'SEGI_25196' => 'sgi', 'SEGI_25515' => 'sgi', 'SEGI_28445' => 'sgi', 'SEGI_37452' => 'sgi', 'SGA_v2.0_scaffold188G40336' => 'sas', 'SGA_v2.0_scaffold228G43247' => 'sas', 'SGA_v2.0_scaffold280G46853' => 'sas', 'SGA_v2.0_scaffold34G13808' => 'sas', 'SGA_v2.0_scaffold40G15576' => 'sas', 'SGA_v2.0_scaffold611G53188' => 'sas', 'SGA_v2.0_scaffold78G25461' => 'sas', 'SGA_v2.0_scaffold90G27888' => 'sas', 'SHI08601' => 'shi', 'SHI08606' => 'shi', 'SHI17117' => 'shi', 'SHI17119' => 'shi', 'SMO118G0201' => 'smo', 'SMO169G0247' => 'smo', 'SMO176G0006' => 'smo', 'SMO176G0015' => 'smo', 'SMO202G0006' => 'smo', 'SMO240G0050' => 'smo', 'SMO286G0009' => 'smo', 'SMO338G0033' => 'smo', 'SMO356G0533' => 'smo', 'SMO364G0382' => 'smo', 'SMO367G0166' => 'smo', 'SMO367G1098' => 'smo', 'Solyc01g009920.3' => 'sly', 'Solyc01g099300.3' => 'sly', 'Solyc02g084700.3' => 'sly', 'Solyc03g097520.3' => 'sly', 'Solyc06g071580.3' => 'sly', 'Solyc10g081760.3' => 'sly', 'Sopen01g005480' => 'spe', 'Sopen01g042850' => 'spe', 'Sopen02g029370' => 'spe', 'Sopen03g028280' => 'spe', 'Sopen06g027870' => 'spe', 'Sopen10g032270' => 'spe', 'Sp5g18180' => 'spa', 'Sp6g12880' => 'spa', 'Sp6g30850' => 'spa', 'Sp7g22960' => 'spa', 'Sp7g34010' => 'spa', 'SpUn1326_0010' => 'spa', 'TAR371G0242' => 'tar', 'TAR622G0638' => 'tar', 'TAR628G1548' => 'tar', 'TAR629G1079' => 'tar', 'TAR629G3413' => 'tar', 'THA.LOC104804249' => 'tha', 'THA.LOC104808315' => 'tha', 'THA.LOC104809238' => 'tha', 'THA.LOC104825484' => 'tha', 'Thecc.01G025500' => 'tca', 'Thecc.03G015800' => 'tca', 'Thecc.03G018000' => 'tca', 'Thecc.03G134800' => 'tca', 'Thecc.04G014700' => 'tca', 'Thhalv10006991m.g' => 'esa', 'Thhalv10012707m.g' => 'esa', 'Thhalv10015739m.g' => 'esa', 'Thhalv10024553m.g' => 'esa', 'Thhalv10024673m.g' => 'esa', 'Thhalv10029187m.g' => 'esa', 'TPR.G12971' => 'tpr', 'TPR.G29396' => 'tpr', 'TPR.G33376' => 'tpr', 'TPR.G35508' => 'tpr', 'TPR.G35516' => 'tpr', 'TPR.G37317' => 'tpr', 'TPR.G37389' => 'tpr', 'TPR.G37523' => 'tpr', 'TPR.G559' => 'tpr', 'TWI14G0070' => 'twi', 'TWI14G0729' => 'twi', 'TWI18G0596' => 'twi', 'TWI39G0780' => 'twi', 'TWI39G0850' => 'twi', 'TWI73G1052' => 'twi', 'unitig_52.g17485' => 'ugi', 'unitig_61.g26355' => 'ugi', 'vmacro01040' => 'vma', 'vmacro16731' => 'vma', 'vmacro18270' => 'vma', 'vmacro19142' => 'vma', 'vmacro19407' => 'vma', 'vmacro19408' => 'vma', 'vmacro21899' => 'vma', 'vmacro21900' => 'vma', 'vmacro21901' => 'vma', 'VMungo0251G0490' => 'vmu', 'VMungo0251G1748' => 'vmu', 'VMungo1309G0421' => 'vmu', 'Zm00001eb086500' => 'zma', 'Zm00001eb150680' => 'zma', 'Zm00001eb162330' => 'zma', 'Zm00001eb203130' => 'zma', 'Zm00001eb369480' => 'zma', 'Zm00001eb382340' => 'zma', 'Zm00001eb416360' => 'zma' ), 'gf_id' => 'HOM05D000902', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000902' ), 'data_identifier' => 'HOM05D000902', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000902', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '663', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02470' => 'bna', 'A01p16260' => 'bna', 'A02p01680' => 'bna', 'A03p16600' => 'bna', 'A03p55660' => 'bna', 'A03p64160' => 'bna', 'A03p64170' => 'bna', 'A08p31900' => 'bna', 'A09p59530' => 'bna', 'A10p08230' => 'bna', 'A10p25090' => 'bna', 'Aa31LG3G7100' => 'aar', 'Aa31LG3G7110' => 'aar', 'Aa31LG6G13160' => 'aar', 'Aa31LG7G10770' => 'aar', 'Aa31LG7G3830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2723' => 'aag', 'Actinidia08045' => 'ach', 'Actinidia08888' => 'ach', 'Actinidia18333' => 'ach', 'Actinidia19334' => 'ach', 'Actinidia25552' => 'ach', 'Actinidia26089' => 'ach', 'Actinidia30615' => 'ach', 'Actinidia30616' => 'ach', 'Actinidia33083' => 'ach', 'Actinidia35762' => 'ach', 'Ah.02g110620' => 'amhyb', 'Ah.11g046390' => 'amhyb', 'AL1G31670' => 'aly', 'AL6G23730' => 'aly', 'AL7G14740' => 'aly', 'AL7G14750' => 'aly', 'AL7G14760' => 'aly', 'AL7G28220' => 'aly', 'AL8G24940' => 'aly', 'Aqoxy3G01665' => 'aox', 'Aqoxy3G02853' => 'aox', 'Aqoxy5G01513' => 'aox', 'Aqoxy5G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8SKA4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ75LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKDA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0LJZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7REX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZP4YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWX7I5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2QKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS0L9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPCD8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q161UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC7XCF' => 'arhy', 'AT1G19100' => 'ath', 'AT4G24970' => 'ath', 'AT4G36270' => 'ath', 'AT4G36280' => 'ath', 'AT4G36290' => 'ath', 'AT5G13130' => 'ath', 'AT5G50780' => 'ath', 'ATR0582G266' => 'atr', 'ATR0661G195' => 'atr', 'ATR1152G031' => 'atr', 'Atru.chr11.2382' => 'acertr', 'Atru.chr12.2337' => 'acertr', 'Atru.chr3.744' => 'acertr', 'Atru.chr6.1870' => 'acertr', 'Atru.chr9.2515' => 'acertr', 'AUR62004120' => 'cqu', 'AUR62005667' => 'cqu', 'AUR62007634' => 'cqu', 'AUR62008186' => 'cqu', 'AUR62008187' => 'cqu', 'AUR62008188' => 'cqu', 'AUR62027954' => 'cqu', 'AUR62028766' => 'cqu', 'AUR62028767' => 'cqu', 'AUR62028768' => 'cqu', 'AUR62028886' => 'cqu', 'AUR62029563' => 'cqu', 'AUR62038832' => 'cqu', 'BcaB01g04149' => 'bca', 'BcaB03g12940' => 'bca', 'BcaB03g13090' => 'bca', 'BcaB03g14466' => 'bca', 'BcaB05g24035' => 'bca', 'BcaC01g06050' => 'bca', 'BcaC04g19148' => 'bca', 'BcaC04g20761' => 'bca', 'BcaC06g32845' => 'bca', 'BcaC07g41274' => 'bca', 'BcaC09g50827' => 'bca', 'BcaNung00741' => 'bca', 'BcaNung00742' => 'bca', 'BcaNung01859' => 'bca', 'BcaNung03985' => 'bca', 'BcaNung03989' => 'bca', 'BcaNung05661' => 'bca', 'BolC1t00257H' => 'bol', 'BolC1t01956H' => 'bol', 'BolC2t06534H' => 'bol', 'BolC3t14334H' => 'bol', 'BolC5t30451H' => 'bol', 'BolC7t45880H' => 'bol', 'BolC7t46586H' => 'bol', 'BolC8t49301H' => 'bol', 'BolC8t51837H' => 'bol', 'BolC9t56822H' => 'bol', 'BolC9t59235H' => 'bol', 'BraA01t00234Z' => 'bra', 'BraA01t01563Z' => 'bra', 'BraA02t05147Z' => 'bra', 'BraA03t10947Z' => 'bra', 'BraA03t14633Z' => 'bra', 'BraA08t35112Z' => 'bra', 'BraA09t41330Z' => 'bra', 'BraA10t44570Z' => 'bra', 'C01p02670' => 'bna', 'C01p20260' => 'bna', 'C02p05890' => 'bna', 'C03p19530' => 'bna', 'C05p17470' => 'bna', 'C07p53900' => 'bna', 'C07p61630' => 'bna', 'C08p16800' => 'bna', 'C08p42810' => 'bna', 'C09p39480' => 'bna', 'C09p63980' => 'bna', 'CAN.G1001.7' => 'can', 'CAN.G1034.55' => 'can', 'CAN.G143.7' => 'can', 'CAN.G3340.1' => 'can', 'CAN.G358.19' => 'can', 'CAN.G373.2' => 'can', 'CAN.G674.16' => 'can', 'CAN.G674.17' => 'can', 'CAN.G674.18' => 'can', 'CAN.G732.2' => 'can', 'CAN.G732.3' => 'can', 'CAN.G993.39' => 'can', 'CANSAT01G2052' => 'cansat', 'CANSAT80G0070' => 'cansat', 'CANSAT80G0483' => 'cansat', 'CANSAT80G0625' => 'cansat', 'CARHR019690' => 'chi', 'CARHR080280' => 'chi', 'CARHR152750' => 'chi', 'CARHR152760' => 'chi', 'CARHR152770' => 'chi', 'CARHR200340' => 'chi', 'CARHR232370' => 'chi', 'CARHR244670' => 'chi', 'CARHR244680' => 'chi', 'CARHR257520' => 'chi', 'Carub.0001s1872' => 'cru', 'Carub.0006s1130' => 'cru', 'Carub.0007s0396' => 'cru', 'Carub.0007s0397' => 'cru', 'Carub.0007s1608' => 'cru', 'Carub.0008s1068' => 'cru', 'Carub.0008s1077' => 'cru', 'Ca_16158_v3' => 'car', 'Ca_17571_v3' => 'car', 'Ca_21936_v3' => 'car', 'Ca_22350_v3' => 'car', 'CBR_g22445' => 'cbr', 'CBR_g26290' => 'cbr', 'Cc04_g09610' => 'ccan', 'Cc04_g12280' => 'ccan', 'Cc07_g10230' => 'ccan', 'CDE02G0093' => 'cde', 'CDE02G0701' => 'cde', 'CDE04G1050' => 'cde', 'CDE05G1833' => 'cde', 'CDE05G3058' => 'cde', 'CDE05G3380' => 'cde', 'CDE06G0536' => 'cde', 'Cfa006923' => 'cfa', 'Cfa009402' => 'cfa', 'Cfa018751' => 'cfa', 'Cfa019164' => 'cfa', 'Cfa022935' => 'cfa', 'Ciclev10019081m.g' => 'ccl', 'Ciclev10025076m.g' => 'ccl', 'Ciclev10030712m.g' => 'ccl', 'Ciclev10033760m.g' => 'ccl', 'CiPaw.05G105600' => 'cil', 'CiPaw.08G136700' => 'cil', 'CiPaw.11G003900' => 'cil', 'CiPaw.11G023700' => 'cil', 'CiPaw.12G003700' => 'cil', 'ClCG06G017100' => 'cla', 'ClCG06G018110' => 'cla', 'ClCG07G008800' => 'cla', 'ClCG07G015330' => 'cla', 'COL.COLO4_13698' => 'col', 'COL.COLO4_16659' => 'col', 'COL.COLO4_21986' => 'col', 'COL.COLO4_24049' => 'col', 'COL.COLO4_29061' => 'col', 'COL.COLO4_29075' => 'col', 'COL.COLO4_30094' => 'col', 'Cpa.g.c33689' => 'cpa', 'Cpa.g.sc108.39' => 'cpa', 'Cpa.g.sc108.41' => 'cpa', 'Cpa.g.sc1163.1' => 'cpa', 'Cpa.g.sc4.155' => 'cpa', 'Cpa.g.sc6.194' => 'cpa', 'CsaV3_1G000340' => 'csa', 'CsaV3_1G001400' => 'csa', 'CsaV3_4G002220' => 'csa', 'CsaV3_4G005370' => 'csa', 'CSS0007487' => 'camsi', 'CSS0008066' => 'camsi', 'CSS0009120' => 'camsi', 'CSS0015512' => 'camsi', 'CSS0022409' => 'camsi', 'CSS0025358' => 'camsi', 'CSS0044547' => 'camsi', 'DCAR_013057' => 'dca', 'DCAR_015058' => 'dca', 'DCAR_016027' => 'dca', 'DCAR_017327' => 'dca', 'DCAR_020743' => 'dca', 'DCAR_026157' => 'dca', 'DCAR_032339' => 'dca', 'DCAR_032340' => 'dca', 'Dinv11200' => 'din', 'Dinv11201' => 'din', 'Dinv20631' => 'din', 'Dinv23182' => 'din', 'Dinv33466' => 'din', 'Dinv33583' => 'din', 'Dinv38565' => 'din', 'Duzib068G0200' => 'dzi', 'Duzib147G0132' => 'dzi', 'Duzib147G0635' => 'dzi', 'Duzib205G1670' => 'dzi', 'Duzib251G0606' => 'dzi', 'ECA232G3336' => 'eca', 'ECA232G3763' => 'eca', 'ECA232G4845' => 'eca', 'ECA234G1607' => 'eca', 'ECA246G0932' => 'eca', 'ECA247G0781' => 'eca', 'ECA247G1932' => 'eca', 'ECA247G2079' => 'eca', 'ECA247G3338' => 'eca', 'ECA247G4115' => 'eca', 'EL10Ac3g06552' => 'bvu', 'EL10Ac5g10721' => 'bvu', 'EL10Ac5g10722' => 'bvu', 'EL10Ac5g10723' => 'bvu', 'EL10Ac5g11361' => 'bvu', 'EL10Ac6g13553' => 'bvu', 'EL10As8g23872' => 'bvu', 'Eucgr.B00250' => 'egr', 'Eucgr.B00251' => 'egr', 'Eucgr.B03533' => 'egr', 'Eucgr.I02381' => 'egr', 'Eucgr.K02700' => 'egr', 'FAN02G0174' => 'fan', 'FAN02G3146' => 'fan', 'FAN04G1672' => 'fan', 'FAN04G2273' => 'fan', 'FAN05G2791' => 'fan', 'FAN05G4035' => 'fan', 'FAN07G0834' => 'fan', 'FAN08G1198' => 'fan', 'FAN09G4182' => 'fan', 'FAN12G0496' => 'fan', 'FAN13G1027' => 'fan', 'FAN13G2951' => 'fan', 'FAN14G0705' => 'fan', 'FAN14G0720' => 'fan', 'FAN17G0201' => 'fan', 'FAN17G2665' => 'fan', 'FAN18G1456' => 'fan', 'FAN18G1525' => 'fan', 'FAN18G3500' => 'fan', 'FAN28G2670' => 'fan', 'FvH4_1g12391' => 'fve', 'FvH4_4g23220' => 'fve', 'FvH4_5g08810' => 'fve', 'FvH4_5g28960' => 'fve', 'FvH4_6g42820' => 'fve', 'FvH4_6g51110' => 'fve', 'Glyma.02G051802' => 'gma', 'Glyma.04G185300' => 'gma', 'Glyma.05G202900' => 'gma', 'Glyma.08G010300' => 'gma', 'Glyma.16G131900' => 'gma', 'Glyma.17G087900' => 'gma', 'Gohir.A07G048600' => 'ghi', 'Gohir.A11G179000' => 'ghi', 'Gohir.A12G140900' => 'ghi', 'Gohir.A12G140950' => 'ghi', 'Gohir.A12G191700' => 'ghi', 'Gohir.A13G086300' => 'ghi', 'Gohir.D07G052900' => 'ghi', 'Gohir.D11G186600' => 'ghi', 'Gohir.D12G145575' => 'ghi', 'Gohir.D12G145650' => 'ghi', 'Gohir.D12G145725' => 'ghi', 'Gohir.D12G194050' => 'ghi', 'Gohir.D13G091800' => 'ghi', 'Gorai.001G055900' => 'gra', 'Gorai.007G198400' => 'gra', 'Gorai.008G157000' => 'gra', 'Gorai.008G157100' => 'gra', 'Gorai.008G208700' => 'gra', 'Gorai.010G138700' => 'gra', 'GSVIVG01000977001' => 'vvi', 'GSVIVG01007708001' => 'vvi', 'GSVIVG01008587001' => 'vvi', 'GSVIVG01018849001' => 'vvi', 'GSVIVG01032432001' => 'vvi', 'HanXRQChr02g0034131' => 'han', 'HanXRQChr02g0035981' => 'han', 'HanXRQChr02g0035991' => 'han', 'HanXRQChr05g0155611' => 'han', 'HanXRQChr05g0155621' => 'han', 'HanXRQChr08g0236501' => 'han', 'HanXRQChr09g0261321' => 'han', 'HanXRQChr09g0272081' => 'han', 'HanXRQChr10g0310741' => 'han', 'HanXRQChr11g0325591' => 'han', 'HanXRQChr12g0385691' => 'han', 'HanXRQChr13g0387801' => 'han', 'HanXRQChr15g0463011' => 'han', 'Haze_03826' => 'cav', 'Haze_03827' => 'cav', 'Haze_07183' => 'cav', 'Haze_07537' => 'cav', 'Haze_07539' => 'cav', 'Haze_12461' => 'cav', 'Haze_16115' => 'cav', 'Haze_16808' => 'cav', 'Haze_18531' => 'cav', 'Hma1.2p1_0046F.1_g026700' => 'hma', 'Hma1.2p1_0046F.1_g026710' => 'hma', 'Hma1.2p1_0168F.1_g074340' => 'hma', 'Hma1.2p1_0266F.1_g107030' => 'hma', 'Hma1.2p1_0266F.1_g107060' => 'hma', 'Hma1.2p1_0275F.1_g110510' => 'hma', 'Hma1.2p1_0592F.1_g185490' => 'hma', 'Hma1.2p1_0592F.1_g185500' => 'hma', 'Hma1.2p1_0592F.1_g185510' => 'hma', 'Hma1.2p1_0592F.1_g185520' => 'hma', 'Hma1.2p1_0592F.1_g185530' => 'hma', 'Hma1.2p1_0818F.1_g223450' => 'hma', 'HPP92_009708' => 'vpl', 'HPP92_009793' => 'vpl', 'HPP92_009796' => 'vpl', 'HPP92_009797' => 'vpl', 'HPP92_014940' => 'vpl', 'HPP92_014988' => 'vpl', 'Hund02463' => 'sun', 'Hund02760' => 'sun', 'Hund05071' => 'sun', 'Hund10108' => 'sun', 'Hund11204' => 'sun', 'Hund14016' => 'sun', 'Hund16464' => 'sun', 'Lalb_Chr09g0333391' => 'lal', 'Lalb_Chr11g0070461' => 'lal', 'Lalb_Chr12g0201671' => 'lal', 'Lalb_Chr13g0297161' => 'lal', 'Lj1g0002823' => 'lja', 'Lj3C1074T6' => 'lonja', 'Lj4A212T28' => 'lonja', 'Lj4g0005516' => 'lja', 'Lj4g0013705' => 'lja', 'Lj4g0027865' => 'lja', 'Lj5C92G16' => 'lonja', 'Lj5C92T12' => 'lonja', 'Lj7C596T3' => 'lonja', 'Lj9A446G59' => 'lonja', 'Lj9A482G21' => 'lonja', 'Lsat_1_v5_gn_1_28261' => 'lsa', 'Lsat_1_v5_gn_1_28281' => 'lsa', 'Lsat_1_v5_gn_1_32721' => 'lsa', 'Lsat_1_v5_gn_4_151760' => 'lsa', 'Lsat_1_v5_gn_4_2120' => 'lsa', 'Lsat_1_v5_gn_4_75761' => 'lsa', 'Lsat_1_v5_gn_5_10920' => 'lsa', 'Manes.02G099900' => 'mes', 'Manes.11G096200' => 'mes', 'Manes.12G007200' => 'mes', 'Manes.14G048300' => 'mes', 'Manes.17G114700' => 'mes', 'Mapoly0002s0070' => 'mpo', 'Mapoly0029s0099' => 'mpo', 'MBI07_g24742_MAGBIO' => 'mbi', 'MBI10_g27988_MAGBIO' => 'mbi', 'MBI11_g13057_MAGBIO' => 'mbi', 'MD02G1137200' => 'mdo', 'MD06G1137200' => 'mdo', 'MD07G1122300' => 'mdo', 'MD09G1078200' => 'mdo', 'MD13G1123700' => 'mdo', 'MD14G1151900' => 'mdo', 'MD17G1030900' => 'mdo', 'MD17G1068200' => 'mdo', 'MD17G1068600' => 'mdo', 'Medtr3g077540' => 'mtr', 'Medtr4g105530' => 'mtr', 'Medtr8g076580' => 'mtr', 'Medtr8g076590' => 'mtr', 'Medtr8g096410' => 'mtr', 'MELO3C016411.2' => 'cme', 'MELO3C017780.2' => 'cme', 'MELO3C022560.2' => 'cme', 'MELO3C026187.2' => 'cme', 'MELO3C026286.2' => 'cme', 'MELO3C032854.2' => 'cme', 'Migut.H02495' => 'egut', 'Migut.I00561' => 'egut', 'Migut.K01015' => 'egut', 'Migut.K01016' => 'egut', 'Migut.L00743' => 'egut', 'Migut.L00744' => 'egut', 'Migut.L00746' => 'egut', 'Migut.L00798' => 'egut', 'Migut.L00799' => 'egut', 'Migut.N02096' => 'egut', 'MSTRG.11259' => 'ama', 'MSTRG.23142' => 'ama', 'MSTRG.2499' => 'ama', 'Nitab4.5_0000003g0730' => 'nta', 'Nitab4.5_0000137g0020' => 'nta', 'Nitab4.5_0000721g0210' => 'nta', 'Nitab4.5_0000723g0050' => 'nta', 'Nitab4.5_0000913g0070' => 'nta', 'Nitab4.5_0001332g0040' => 'nta', 'Nitab4.5_0001771g0050' => 'nta', 'Nitab4.5_0001918g0050' => 'nta', 'Nitab4.5_0002686g0030' => 'nta', 'Nitab4.5_0003156g0020' => 'nta', 'Nitab4.5_0003383g0040' => 'nta', 'Nitab4.5_0003918g0010' => 'nta', 'Nitab4.5_0006760g0010' => 'nta', 'Nn1g05981' => 'nnu', 'Nn1g06288' => 'nnu', 'Nn3g16371' => 'nnu', 'Nn3g16786' => 'nnu', 'Nn4g22232' => 'nnu', 'Oeu005144.1' => 'oeu', 'Oeu005145.1' => 'oeu', 'Oeu011348.1' => 'oeu', 'Oeu016415.1' => 'oeu', 'Oeu023501.1' => 'oeu', 'Oeu044473.1' => 'oeu', 'Oeu048892.2' => 'oeu', 'Os01g0549200' => 'osa', 'Os02g0469300' => 'osa', 'Os04g0311100' => 'osa', 'Os06g0474900' => 'osa', 'Os10g0181700' => 'osa', 'Os11g0454800' => 'osa', 'Peaxi162Scf00037g00714' => 'pax', 'Peaxi162Scf00084g01217' => 'pax', 'Peaxi162Scf00257g00217' => 'pax', 'Peaxi162Scf00516g00215' => 'pax', 'Peaxi162Scf00689g00123' => 'pax', 'PGR044G2719' => 'pgr', 'PGR083G1360' => 'pgr', 'PGR102G2849' => 'pgr', 'PGR119G2534' => 'pgr', 'PGSC0003DMG400003538' => 'stu', 'PGSC0003DMG400028138' => 'stu', 'PGSC0003DMG400031732' => 'stu', 'PGSC0003DMG400038165' => 'stu', 'Phvul.002G284600' => 'pvu', 'Phvul.003G258200' => 'pvu', 'Phvul.009G176500' => 'pvu', 'Potri.003G167201' => 'ptr', 'Potri.005G118400' => 'ptr', 'Potri.012G089000' => 'ptr', 'Potri.012G102800' => 'ptr', 'Potri.015G079400' => 'ptr', 'Potri.015G100900' => 'ptr', 'Pp3c14_9810' => 'ppa', 'Pp3c15_10450' => 'ppa', 'Pp3c20_19150' => 'ppa', 'Pp3c23_12740' => 'ppa', 'Pp3c23_6310' => 'ppa', 'Pp3c24_3720' => 'ppa', 'Pp3c27_2580' => 'ppa', 'Pp3c9_8990' => 'ppa', 'PRCOL_00002854' => 'pco', 'Prupe.1G221200' => 'ppe', 'Prupe.3G289000' => 'ppe', 'Prupe.5G147000' => 'ppe', 'Prupe.6G157300' => 'ppe', 'Prupe.7G163400' => 'ppe', 'Psat0s2177g0040' => 'psa', 'Psat3g174760' => 'psa', 'Psat3g192160' => 'psa', 'Psat4g058520' => 'psa', 'Psat4g096840' => 'psa', 'Psat7g037320' => 'psa', 'PSO017G1274' => 'pso', 'PSO017G5166' => 'pso', 'PSO063G4558' => 'pso', 'PSO170G4458' => 'pso', 'PSO170G5005' => 'pso', 'PSO210G6156' => 'pso', 'PSO210G6635' => 'pso', 'PSO210G7397' => 'pso', 'PSO210G7700' => 'pso', 'PSO455G0035' => 'pso', 'PSO455G0180' => 'pso', 'PSO478G4515' => 'pso', 'PSO832G1305' => 'pso', 'PSO832G3489' => 'pso', 'QL02p075247' => 'qlo', 'QL03p051148' => 'qlo', 'QL05p010313' => 'qlo', 'QL06p034627' => 'qlo', 'QL10p001889' => 'qlo', 'QL10p010846' => 'qlo', 'RcHm_v2.0_Chr1g0350621' => 'rch', 'RcHm_v2.0_Chr1g0350641' => 'rch', 'RcHm_v2.0_Chr2g0092891' => 'rch', 'RcHm_v2.0_Chr2g0100251' => 'rch', 'RcHm_v2.0_Chr2g0158661' => 'rch', 'RcHm_v2.0_Chr2g0172741' => 'rch', 'RcHm_v2.0_Chr4g0429571' => 'rch', 'RcHm_v2.0_Chr5g0042471' => 'rch', 'RcHm_v2.0_Chr7g0189451' => 'rch', 'Rhsim08G0052000' => 'rsi', 'Rhsim08G0174400' => 'rsi', 'Rhsim08G0193200' => 'rsi', 'Rhsim10G0214800' => 'rsi', 'Rhsim10G0214900' => 'rsi', 'Rhsim10G0215000' => 'rsi', 'Rhsim12G0022900' => 'rsi', 'Rhsim12G0177500' => 'rsi', 'Rhsim12G0177700' => 'rsi', 'Sabra03G0122600' => 'sbr', 'Sabra05G0097400' => 'sbr', 'Sabra12G0064100' => 'sbr', 'Sabra15G0121300' => 'sbr', 'SalBow2G0642' => 'sbo', 'SalBow5G2667' => 'sbo', 'SalBow5G4873' => 'sbo', 'SalBow8G2395' => 'sbo', 'Sc03g0003290' => 'sci', 'Sc10g0010130' => 'sci', 'Sc22g0003650' => 'sci', 'Sed0001603' => 'sed', 'Sed0004259' => 'sed', 'Sed0006789' => 'sed', 'Sed0011838' => 'sed', 'Sed0012964' => 'sed', 'Sed0016383' => 'sed', 'Sed0019010' => 'sed', 'Sed0020188' => 'sed', 'SEGI_04702' => 'sgi', 'SEGI_17231' => 'sgi', 'SEGI_18877' => 'sgi', 'SEGI_25196' => 'sgi', 'SEGI_25515' => 'sgi', 'SEGI_28445' => 'sgi', 'SEGI_37452' => 'sgi', 'SGA_v2.0_scaffold188G40336' => 'sas', 'SGA_v2.0_scaffold228G43247' => 'sas', 'SGA_v2.0_scaffold280G46853' => 'sas', 'SGA_v2.0_scaffold34G13808' => 'sas', 'SGA_v2.0_scaffold40G15576' => 'sas', 'SGA_v2.0_scaffold611G53188' => 'sas', 'SGA_v2.0_scaffold78G25461' => 'sas', 'SGA_v2.0_scaffold90G27888' => 'sas', 'SHI08601' => 'shi', 'SHI08606' => 'shi', 'SHI17117' => 'shi', 'SHI17119' => 'shi', 'SMO118G0201' => 'smo', 'SMO169G0247' => 'smo', 'SMO176G0006' => 'smo', 'SMO176G0015' => 'smo', 'SMO202G0006' => 'smo', 'SMO240G0050' => 'smo', 'SMO286G0009' => 'smo', 'SMO338G0033' => 'smo', 'SMO356G0533' => 'smo', 'SMO364G0382' => 'smo', 'SMO367G0166' => 'smo', 'SMO367G1098' => 'smo', 'Solyc01g009920.3' => 'sly', 'Solyc01g099300.3' => 'sly', 'Solyc02g084700.3' => 'sly', 'Solyc03g097520.3' => 'sly', 'Solyc06g071580.3' => 'sly', 'Solyc10g081760.3' => 'sly', 'Sopen01g005480' => 'spe', 'Sopen01g042850' => 'spe', 'Sopen02g029370' => 'spe', 'Sopen03g028280' => 'spe', 'Sopen06g027870' => 'spe', 'Sopen10g032270' => 'spe', 'Sp5g18180' => 'spa', 'Sp6g12880' => 'spa', 'Sp6g30850' => 'spa', 'Sp7g22960' => 'spa', 'Sp7g34010' => 'spa', 'SpUn1326_0010' => 'spa', 'TAR371G0242' => 'tar', 'TAR622G0638' => 'tar', 'TAR628G1548' => 'tar', 'TAR629G1079' => 'tar', 'TAR629G3413' => 'tar', 'THA.LOC104804249' => 'tha', 'THA.LOC104808315' => 'tha', 'THA.LOC104809238' => 'tha', 'THA.LOC104825484' => 'tha', 'Thecc.01G025500' => 'tca', 'Thecc.03G015800' => 'tca', 'Thecc.03G018000' => 'tca', 'Thecc.03G134800' => 'tca', 'Thecc.04G014700' => 'tca', 'Thhalv10006991m.g' => 'esa', 'Thhalv10012707m.g' => 'esa', 'Thhalv10015739m.g' => 'esa', 'Thhalv10024553m.g' => 'esa', 'Thhalv10024673m.g' => 'esa', 'Thhalv10029187m.g' => 'esa', 'TPR.G12971' => 'tpr', 'TPR.G29396' => 'tpr', 'TPR.G33376' => 'tpr', 'TPR.G35508' => 'tpr', 'TPR.G35516' => 'tpr', 'TPR.G37317' => 'tpr', 'TPR.G37389' => 'tpr', 'TPR.G37523' => 'tpr', 'TPR.G559' => 'tpr', 'TWI14G0070' => 'twi', 'TWI14G0729' => 'twi', 'TWI18G0596' => 'twi', 'TWI39G0780' => 'twi', 'TWI39G0850' => 'twi', 'TWI73G1052' => 'twi', 'unitig_52.g17485' => 'ugi', 'unitig_61.g26355' => 'ugi', 'vmacro01040' => 'vma', 'vmacro16731' => 'vma', 'vmacro18270' => 'vma', 'vmacro19142' => 'vma', 'vmacro19407' => 'vma', 'vmacro19408' => 'vma', 'vmacro21899' => 'vma', 'vmacro21900' => 'vma', 'vmacro21901' => 'vma', 'VMungo0251G0490' => 'vmu', 'VMungo0251G1748' => 'vmu', 'VMungo1309G0421' => 'vmu', 'Zm00001eb086500' => 'zma', 'Zm00001eb150680' => 'zma', 'Zm00001eb162330' => 'zma', 'Zm00001eb203130' => 'zma', 'Zm00001eb369480' => 'zma', 'Zm00001eb382340' => 'zma', 'Zm00001eb416360' => 'zma' ) $gf_id = 'HOM05D000902' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000902' ) $data_identifier = 'HOM05D000902' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 13, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 10, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 6, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 9, 'hma' => (int) 12, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 4, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 6, 'ppa' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 6, 'rch' => (int) 9, 'rsi' => (int) 9, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 12, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 3, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416360' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000902', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '663', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02470' => 'bna', 'A01p16260' => 'bna', 'A02p01680' => 'bna', 'A03p16600' => 'bna', 'A03p55660' => 'bna', 'A03p64160' => 'bna', 'A03p64170' => 'bna', 'A08p31900' => 'bna', 'A09p59530' => 'bna', 'A10p08230' => 'bna', 'A10p25090' => 'bna', 'Aa31LG3G7100' => 'aar', 'Aa31LG3G7110' => 'aar', 'Aa31LG6G13160' => 'aar', 'Aa31LG7G10770' => 'aar', 'Aa31LG7G3830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2723' => 'aag', 'Actinidia08045' => 'ach', 'Actinidia08888' => 'ach', 'Actinidia18333' => 'ach', 'Actinidia19334' => 'ach', 'Actinidia25552' => 'ach', 'Actinidia26089' => 'ach', 'Actinidia30615' => 'ach', 'Actinidia30616' => 'ach', 'Actinidia33083' => 'ach', 'Actinidia35762' => 'ach', 'Ah.02g110620' => 'amhyb', 'Ah.11g046390' => 'amhyb', 'AL1G31670' => 'aly', 'AL6G23730' => 'aly', 'AL7G14740' => 'aly', 'AL7G14750' => 'aly', 'AL7G14760' => 'aly', 'AL7G28220' => 'aly', 'AL8G24940' => 'aly', 'Aqoxy3G01665' => 'aox', 'Aqoxy3G02853' => 'aox', 'Aqoxy5G01513' => 'aox', 'Aqoxy5G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8SKA4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ75LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKDA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0LJZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7REX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZP4YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWX7I5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2QKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS0L9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPCD8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q161UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC7XCF' => 'arhy', 'AT1G19100' => 'ath', 'AT4G24970' => 'ath', 'AT4G36270' => 'ath', 'AT4G36280' => 'ath', 'AT4G36290' => 'ath', 'AT5G13130' => 'ath', 'AT5G50780' => 'ath', 'ATR0582G266' => 'atr', 'ATR0661G195' => 'atr', 'ATR1152G031' => 'atr', 'Atru.chr11.2382' => 'acertr', 'Atru.chr12.2337' => 'acertr', 'Atru.chr3.744' => 'acertr', 'Atru.chr6.1870' => 'acertr', 'Atru.chr9.2515' => 'acertr', 'AUR62004120' => 'cqu', 'AUR62005667' => 'cqu', 'AUR62007634' => 'cqu', 'AUR62008186' => 'cqu', 'AUR62008187' => 'cqu', 'AUR62008188' => 'cqu', 'AUR62027954' => 'cqu', 'AUR62028766' => 'cqu', 'AUR62028767' => 'cqu', 'AUR62028768' => 'cqu', 'AUR62028886' => 'cqu', 'AUR62029563' => 'cqu', 'AUR62038832' => 'cqu', 'BcaB01g04149' => 'bca', 'BcaB03g12940' => 'bca', 'BcaB03g13090' => 'bca', 'BcaB03g14466' => 'bca', 'BcaB05g24035' => 'bca', 'BcaC01g06050' => 'bca', 'BcaC04g19148' => 'bca', 'BcaC04g20761' => 'bca', 'BcaC06g32845' => 'bca', 'BcaC07g41274' => 'bca', 'BcaC09g50827' => 'bca', 'BcaNung00741' => 'bca', 'BcaNung00742' => 'bca', 'BcaNung01859' => 'bca', 'BcaNung03985' => 'bca', 'BcaNung03989' => 'bca', 'BcaNung05661' => 'bca', 'BolC1t00257H' => 'bol', 'BolC1t01956H' => 'bol', 'BolC2t06534H' => 'bol', 'BolC3t14334H' => 'bol', 'BolC5t30451H' => 'bol', 'BolC7t45880H' => 'bol', 'BolC7t46586H' => 'bol', 'BolC8t49301H' => 'bol', 'BolC8t51837H' => 'bol', 'BolC9t56822H' => 'bol', 'BolC9t59235H' => 'bol', 'BraA01t00234Z' => 'bra', 'BraA01t01563Z' => 'bra', 'BraA02t05147Z' => 'bra', 'BraA03t10947Z' => 'bra', 'BraA03t14633Z' => 'bra', 'BraA08t35112Z' => 'bra', 'BraA09t41330Z' => 'bra', 'BraA10t44570Z' => 'bra', 'C01p02670' => 'bna', 'C01p20260' => 'bna', 'C02p05890' => 'bna', 'C03p19530' => 'bna', 'C05p17470' => 'bna', 'C07p53900' => 'bna', 'C07p61630' => 'bna', 'C08p16800' => 'bna', 'C08p42810' => 'bna', 'C09p39480' => 'bna', 'C09p63980' => 'bna', 'CAN.G1001.7' => 'can', 'CAN.G1034.55' => 'can', 'CAN.G143.7' => 'can', 'CAN.G3340.1' => 'can', 'CAN.G358.19' => 'can', 'CAN.G373.2' => 'can', 'CAN.G674.16' => 'can', 'CAN.G674.17' => 'can', 'CAN.G674.18' => 'can', 'CAN.G732.2' => 'can', 'CAN.G732.3' => 'can', 'CAN.G993.39' => 'can', 'CANSAT01G2052' => 'cansat', 'CANSAT80G0070' => 'cansat', 'CANSAT80G0483' => 'cansat', 'CANSAT80G0625' => 'cansat', 'CARHR019690' => 'chi', 'CARHR080280' => 'chi', 'CARHR152750' => 'chi', 'CARHR152760' => 'chi', 'CARHR152770' => 'chi', 'CARHR200340' => 'chi', 'CARHR232370' => 'chi', 'CARHR244670' => 'chi', 'CARHR244680' => 'chi', 'CARHR257520' => 'chi', 'Carub.0001s1872' => 'cru', 'Carub.0006s1130' => 'cru', 'Carub.0007s0396' => 'cru', 'Carub.0007s0397' => 'cru', 'Carub.0007s1608' => 'cru', 'Carub.0008s1068' => 'cru', 'Carub.0008s1077' => 'cru', 'Ca_16158_v3' => 'car', 'Ca_17571_v3' => 'car', 'Ca_21936_v3' => 'car', 'Ca_22350_v3' => 'car', 'CBR_g22445' => 'cbr', 'CBR_g26290' => 'cbr', 'Cc04_g09610' => 'ccan', 'Cc04_g12280' => 'ccan', 'Cc07_g10230' => 'ccan', 'CDE02G0093' => 'cde', 'CDE02G0701' => 'cde', 'CDE04G1050' => 'cde', 'CDE05G1833' => 'cde', 'CDE05G3058' => 'cde', 'CDE05G3380' => 'cde', 'CDE06G0536' => 'cde', 'Cfa006923' => 'cfa', 'Cfa009402' => 'cfa', 'Cfa018751' => 'cfa', 'Cfa019164' => 'cfa', 'Cfa022935' => 'cfa', 'Ciclev10019081m.g' => 'ccl', 'Ciclev10025076m.g' => 'ccl', 'Ciclev10030712m.g' => 'ccl', 'Ciclev10033760m.g' => 'ccl', 'CiPaw.05G105600' => 'cil', 'CiPaw.08G136700' => 'cil', 'CiPaw.11G003900' => 'cil', 'CiPaw.11G023700' => 'cil', 'CiPaw.12G003700' => 'cil', 'ClCG06G017100' => 'cla', 'ClCG06G018110' => 'cla', 'ClCG07G008800' => 'cla', 'ClCG07G015330' => 'cla', 'COL.COLO4_13698' => 'col', 'COL.COLO4_16659' => 'col', 'COL.COLO4_21986' => 'col', 'COL.COLO4_24049' => 'col', 'COL.COLO4_29061' => 'col', 'COL.COLO4_29075' => 'col', 'COL.COLO4_30094' => 'col', 'Cpa.g.c33689' => 'cpa', 'Cpa.g.sc108.39' => 'cpa', 'Cpa.g.sc108.41' => 'cpa', 'Cpa.g.sc1163.1' => 'cpa', 'Cpa.g.sc4.155' => 'cpa', 'Cpa.g.sc6.194' => 'cpa', 'CsaV3_1G000340' => 'csa', 'CsaV3_1G001400' => 'csa', 'CsaV3_4G002220' => 'csa', 'CsaV3_4G005370' => 'csa', 'CSS0007487' => 'camsi', 'CSS0008066' => 'camsi', 'CSS0009120' => 'camsi', 'CSS0015512' => 'camsi', 'CSS0022409' => 'camsi', 'CSS0025358' => 'camsi', 'CSS0044547' => 'camsi', 'DCAR_013057' => 'dca', 'DCAR_015058' => 'dca', 'DCAR_016027' => 'dca', 'DCAR_017327' => 'dca', 'DCAR_020743' => 'dca', 'DCAR_026157' => 'dca', 'DCAR_032339' => 'dca', 'DCAR_032340' => 'dca', 'Dinv11200' => 'din', 'Dinv11201' => 'din', 'Dinv20631' => 'din', 'Dinv23182' => 'din', 'Dinv33466' => 'din', 'Dinv33583' => 'din', 'Dinv38565' => 'din', 'Duzib068G0200' => 'dzi', 'Duzib147G0132' => 'dzi', 'Duzib147G0635' => 'dzi', 'Duzib205G1670' => 'dzi', 'Duzib251G0606' => 'dzi', 'ECA232G3336' => 'eca', 'ECA232G3763' => 'eca', 'ECA232G4845' => 'eca', 'ECA234G1607' => 'eca', 'ECA246G0932' => 'eca', 'ECA247G0781' => 'eca', 'ECA247G1932' => 'eca', 'ECA247G2079' => 'eca', 'ECA247G3338' => 'eca', 'ECA247G4115' => 'eca', 'EL10Ac3g06552' => 'bvu', 'EL10Ac5g10721' => 'bvu', 'EL10Ac5g10722' => 'bvu', 'EL10Ac5g10723' => 'bvu', 'EL10Ac5g11361' => 'bvu', 'EL10Ac6g13553' => 'bvu', 'EL10As8g23872' => 'bvu', 'Eucgr.B00250' => 'egr', 'Eucgr.B00251' => 'egr', 'Eucgr.B03533' => 'egr', 'Eucgr.I02381' => 'egr', 'Eucgr.K02700' => 'egr', 'FAN02G0174' => 'fan', 'FAN02G3146' => 'fan', 'FAN04G1672' => 'fan', 'FAN04G2273' => 'fan', 'FAN05G2791' => 'fan', 'FAN05G4035' => 'fan', 'FAN07G0834' => 'fan', 'FAN08G1198' => 'fan', 'FAN09G4182' => 'fan', 'FAN12G0496' => 'fan', 'FAN13G1027' => 'fan', 'FAN13G2951' => 'fan', 'FAN14G0705' => 'fan', 'FAN14G0720' => 'fan', 'FAN17G0201' => 'fan', 'FAN17G2665' => 'fan', 'FAN18G1456' => 'fan', 'FAN18G1525' => 'fan', 'FAN18G3500' => 'fan', 'FAN28G2670' => 'fan', 'FvH4_1g12391' => 'fve', 'FvH4_4g23220' => 'fve', 'FvH4_5g08810' => 'fve', 'FvH4_5g28960' => 'fve', 'FvH4_6g42820' => 'fve', 'FvH4_6g51110' => 'fve', 'Glyma.02G051802' => 'gma', 'Glyma.04G185300' => 'gma', 'Glyma.05G202900' => 'gma', 'Glyma.08G010300' => 'gma', 'Glyma.16G131900' => 'gma', 'Glyma.17G087900' => 'gma', 'Gohir.A07G048600' => 'ghi', 'Gohir.A11G179000' => 'ghi', 'Gohir.A12G140900' => 'ghi', 'Gohir.A12G140950' => 'ghi', 'Gohir.A12G191700' => 'ghi', 'Gohir.A13G086300' => 'ghi', 'Gohir.D07G052900' => 'ghi', 'Gohir.D11G186600' => 'ghi', 'Gohir.D12G145575' => 'ghi', 'Gohir.D12G145650' => 'ghi', 'Gohir.D12G145725' => 'ghi', 'Gohir.D12G194050' => 'ghi', 'Gohir.D13G091800' => 'ghi', 'Gorai.001G055900' => 'gra', 'Gorai.007G198400' => 'gra', 'Gorai.008G157000' => 'gra', 'Gorai.008G157100' => 'gra', 'Gorai.008G208700' => 'gra', 'Gorai.010G138700' => 'gra', 'GSVIVG01000977001' => 'vvi', 'GSVIVG01007708001' => 'vvi', 'GSVIVG01008587001' => 'vvi', 'GSVIVG01018849001' => 'vvi', 'GSVIVG01032432001' => 'vvi', 'HanXRQChr02g0034131' => 'han', 'HanXRQChr02g0035981' => 'han', 'HanXRQChr02g0035991' => 'han', 'HanXRQChr05g0155611' => 'han', 'HanXRQChr05g0155621' => 'han', 'HanXRQChr08g0236501' => 'han', 'HanXRQChr09g0261321' => 'han', 'HanXRQChr09g0272081' => 'han', 'HanXRQChr10g0310741' => 'han', 'HanXRQChr11g0325591' => 'han', 'HanXRQChr12g0385691' => 'han', 'HanXRQChr13g0387801' => 'han', 'HanXRQChr15g0463011' => 'han', 'Haze_03826' => 'cav', 'Haze_03827' => 'cav', 'Haze_07183' => 'cav', 'Haze_07537' => 'cav', 'Haze_07539' => 'cav', 'Haze_12461' => 'cav', 'Haze_16115' => 'cav', 'Haze_16808' => 'cav', 'Haze_18531' => 'cav', 'Hma1.2p1_0046F.1_g026700' => 'hma', 'Hma1.2p1_0046F.1_g026710' => 'hma', 'Hma1.2p1_0168F.1_g074340' => 'hma', 'Hma1.2p1_0266F.1_g107030' => 'hma', 'Hma1.2p1_0266F.1_g107060' => 'hma', 'Hma1.2p1_0275F.1_g110510' => 'hma', 'Hma1.2p1_0592F.1_g185490' => 'hma', 'Hma1.2p1_0592F.1_g185500' => 'hma', 'Hma1.2p1_0592F.1_g185510' => 'hma', 'Hma1.2p1_0592F.1_g185520' => 'hma', 'Hma1.2p1_0592F.1_g185530' => 'hma', 'Hma1.2p1_0818F.1_g223450' => 'hma', 'HPP92_009708' => 'vpl', 'HPP92_009793' => 'vpl', 'HPP92_009796' => 'vpl', 'HPP92_009797' => 'vpl', 'HPP92_014940' => 'vpl', 'HPP92_014988' => 'vpl', 'Hund02463' => 'sun', 'Hund02760' => 'sun', 'Hund05071' => 'sun', 'Hund10108' => 'sun', 'Hund11204' => 'sun', 'Hund14016' => 'sun', 'Hund16464' => 'sun', 'Lalb_Chr09g0333391' => 'lal', 'Lalb_Chr11g0070461' => 'lal', 'Lalb_Chr12g0201671' => 'lal', 'Lalb_Chr13g0297161' => 'lal', 'Lj1g0002823' => 'lja', 'Lj3C1074T6' => 'lonja', 'Lj4A212T28' => 'lonja', 'Lj4g0005516' => 'lja', 'Lj4g0013705' => 'lja', 'Lj4g0027865' => 'lja', 'Lj5C92G16' => 'lonja', 'Lj5C92T12' => 'lonja', 'Lj7C596T3' => 'lonja', 'Lj9A446G59' => 'lonja', 'Lj9A482G21' => 'lonja', 'Lsat_1_v5_gn_1_28261' => 'lsa', 'Lsat_1_v5_gn_1_28281' => 'lsa', 'Lsat_1_v5_gn_1_32721' => 'lsa', 'Lsat_1_v5_gn_4_151760' => 'lsa', 'Lsat_1_v5_gn_4_2120' => 'lsa', 'Lsat_1_v5_gn_4_75761' => 'lsa', 'Lsat_1_v5_gn_5_10920' => 'lsa', 'Manes.02G099900' => 'mes', 'Manes.11G096200' => 'mes', 'Manes.12G007200' => 'mes', 'Manes.14G048300' => 'mes', 'Manes.17G114700' => 'mes', 'Mapoly0002s0070' => 'mpo', 'Mapoly0029s0099' => 'mpo', 'MBI07_g24742_MAGBIO' => 'mbi', 'MBI10_g27988_MAGBIO' => 'mbi', 'MBI11_g13057_MAGBIO' => 'mbi', 'MD02G1137200' => 'mdo', 'MD06G1137200' => 'mdo', 'MD07G1122300' => 'mdo', 'MD09G1078200' => 'mdo', 'MD13G1123700' => 'mdo', 'MD14G1151900' => 'mdo', 'MD17G1030900' => 'mdo', 'MD17G1068200' => 'mdo', 'MD17G1068600' => 'mdo', 'Medtr3g077540' => 'mtr', 'Medtr4g105530' => 'mtr', 'Medtr8g076580' => 'mtr', 'Medtr8g076590' => 'mtr', 'Medtr8g096410' => 'mtr', 'MELO3C016411.2' => 'cme', 'MELO3C017780.2' => 'cme', 'MELO3C022560.2' => 'cme', 'MELO3C026187.2' => 'cme', 'MELO3C026286.2' => 'cme', 'MELO3C032854.2' => 'cme', 'Migut.H02495' => 'egut', 'Migut.I00561' => 'egut', 'Migut.K01015' => 'egut', 'Migut.K01016' => 'egut', 'Migut.L00743' => 'egut', 'Migut.L00744' => 'egut', 'Migut.L00746' => 'egut', 'Migut.L00798' => 'egut', 'Migut.L00799' => 'egut', 'Migut.N02096' => 'egut', 'MSTRG.11259' => 'ama', 'MSTRG.23142' => 'ama', 'MSTRG.2499' => 'ama', 'Nitab4.5_0000003g0730' => 'nta', 'Nitab4.5_0000137g0020' => 'nta', 'Nitab4.5_0000721g0210' => 'nta', 'Nitab4.5_0000723g0050' => 'nta', 'Nitab4.5_0000913g0070' => 'nta', 'Nitab4.5_0001332g0040' => 'nta', 'Nitab4.5_0001771g0050' => 'nta', 'Nitab4.5_0001918g0050' => 'nta', 'Nitab4.5_0002686g0030' => 'nta', 'Nitab4.5_0003156g0020' => 'nta', 'Nitab4.5_0003383g0040' => 'nta', 'Nitab4.5_0003918g0010' => 'nta', 'Nitab4.5_0006760g0010' => 'nta', 'Nn1g05981' => 'nnu', 'Nn1g06288' => 'nnu', 'Nn3g16371' => 'nnu', 'Nn3g16786' => 'nnu', 'Nn4g22232' => 'nnu', 'Oeu005144.1' => 'oeu', 'Oeu005145.1' => 'oeu', 'Oeu011348.1' => 'oeu', 'Oeu016415.1' => 'oeu', 'Oeu023501.1' => 'oeu', 'Oeu044473.1' => 'oeu', 'Oeu048892.2' => 'oeu', 'Os01g0549200' => 'osa', 'Os02g0469300' => 'osa', 'Os04g0311100' => 'osa', 'Os06g0474900' => 'osa', 'Os10g0181700' => 'osa', 'Os11g0454800' => 'osa', 'Peaxi162Scf00037g00714' => 'pax', 'Peaxi162Scf00084g01217' => 'pax', 'Peaxi162Scf00257g00217' => 'pax', 'Peaxi162Scf00516g00215' => 'pax', 'Peaxi162Scf00689g00123' => 'pax', 'PGR044G2719' => 'pgr', 'PGR083G1360' => 'pgr', 'PGR102G2849' => 'pgr', 'PGR119G2534' => 'pgr', 'PGSC0003DMG400003538' => 'stu', 'PGSC0003DMG400028138' => 'stu', 'PGSC0003DMG400031732' => 'stu', 'PGSC0003DMG400038165' => 'stu', 'Phvul.002G284600' => 'pvu', 'Phvul.003G258200' => 'pvu', 'Phvul.009G176500' => 'pvu', 'Potri.003G167201' => 'ptr', 'Potri.005G118400' => 'ptr', 'Potri.012G089000' => 'ptr', 'Potri.012G102800' => 'ptr', 'Potri.015G079400' => 'ptr', 'Potri.015G100900' => 'ptr', 'Pp3c14_9810' => 'ppa', 'Pp3c15_10450' => 'ppa', 'Pp3c20_19150' => 'ppa', 'Pp3c23_12740' => 'ppa', 'Pp3c23_6310' => 'ppa', 'Pp3c24_3720' => 'ppa', 'Pp3c27_2580' => 'ppa', 'Pp3c9_8990' => 'ppa', 'PRCOL_00002854' => 'pco', 'Prupe.1G221200' => 'ppe', 'Prupe.3G289000' => 'ppe', 'Prupe.5G147000' => 'ppe', 'Prupe.6G157300' => 'ppe', 'Prupe.7G163400' => 'ppe', 'Psat0s2177g0040' => 'psa', 'Psat3g174760' => 'psa', 'Psat3g192160' => 'psa', 'Psat4g058520' => 'psa', 'Psat4g096840' => 'psa', 'Psat7g037320' => 'psa', 'PSO017G1274' => 'pso', 'PSO017G5166' => 'pso', 'PSO063G4558' => 'pso', 'PSO170G4458' => 'pso', 'PSO170G5005' => 'pso', 'PSO210G6156' => 'pso', 'PSO210G6635' => 'pso', 'PSO210G7397' => 'pso', 'PSO210G7700' => 'pso', 'PSO455G0035' => 'pso', 'PSO455G0180' => 'pso', 'PSO478G4515' => 'pso', 'PSO832G1305' => 'pso', 'PSO832G3489' => 'pso', 'QL02p075247' => 'qlo', 'QL03p051148' => 'qlo', 'QL05p010313' => 'qlo', 'QL06p034627' => 'qlo', 'QL10p001889' => 'qlo', 'QL10p010846' => 'qlo', 'RcHm_v2.0_Chr1g0350621' => 'rch', 'RcHm_v2.0_Chr1g0350641' => 'rch', 'RcHm_v2.0_Chr2g0092891' => 'rch', 'RcHm_v2.0_Chr2g0100251' => 'rch', 'RcHm_v2.0_Chr2g0158661' => 'rch', 'RcHm_v2.0_Chr2g0172741' => 'rch', 'RcHm_v2.0_Chr4g0429571' => 'rch', 'RcHm_v2.0_Chr5g0042471' => 'rch', 'RcHm_v2.0_Chr7g0189451' => 'rch', 'Rhsim08G0052000' => 'rsi', 'Rhsim08G0174400' => 'rsi', 'Rhsim08G0193200' => 'rsi', 'Rhsim10G0214800' => 'rsi', 'Rhsim10G0214900' => 'rsi', 'Rhsim10G0215000' => 'rsi', 'Rhsim12G0022900' => 'rsi', 'Rhsim12G0177500' => 'rsi', 'Rhsim12G0177700' => 'rsi', 'Sabra03G0122600' => 'sbr', 'Sabra05G0097400' => 'sbr', 'Sabra12G0064100' => 'sbr', 'Sabra15G0121300' => 'sbr', 'SalBow2G0642' => 'sbo', 'SalBow5G2667' => 'sbo', 'SalBow5G4873' => 'sbo', 'SalBow8G2395' => 'sbo', 'Sc03g0003290' => 'sci', 'Sc10g0010130' => 'sci', 'Sc22g0003650' => 'sci', 'Sed0001603' => 'sed', 'Sed0004259' => 'sed', 'Sed0006789' => 'sed', 'Sed0011838' => 'sed', 'Sed0012964' => 'sed', 'Sed0016383' => 'sed', 'Sed0019010' => 'sed', 'Sed0020188' => 'sed', 'SEGI_04702' => 'sgi', 'SEGI_17231' => 'sgi', 'SEGI_18877' => 'sgi', 'SEGI_25196' => 'sgi', 'SEGI_25515' => 'sgi', 'SEGI_28445' => 'sgi', 'SEGI_37452' => 'sgi', 'SGA_v2.0_scaffold188G40336' => 'sas', 'SGA_v2.0_scaffold228G43247' => 'sas', 'SGA_v2.0_scaffold280G46853' => 'sas', 'SGA_v2.0_scaffold34G13808' => 'sas', 'SGA_v2.0_scaffold40G15576' => 'sas', 'SGA_v2.0_scaffold611G53188' => 'sas', 'SGA_v2.0_scaffold78G25461' => 'sas', 'SGA_v2.0_scaffold90G27888' => 'sas', 'SHI08601' => 'shi', 'SHI08606' => 'shi', 'SHI17117' => 'shi', 'SHI17119' => 'shi', 'SMO118G0201' => 'smo', 'SMO169G0247' => 'smo', 'SMO176G0006' => 'smo', 'SMO176G0015' => 'smo', 'SMO202G0006' => 'smo', 'SMO240G0050' => 'smo', 'SMO286G0009' => 'smo', 'SMO338G0033' => 'smo', 'SMO356G0533' => 'smo', 'SMO364G0382' => 'smo', 'SMO367G0166' => 'smo', 'SMO367G1098' => 'smo', 'Solyc01g009920.3' => 'sly', 'Solyc01g099300.3' => 'sly', 'Solyc02g084700.3' => 'sly', 'Solyc03g097520.3' => 'sly', 'Solyc06g071580.3' => 'sly', 'Solyc10g081760.3' => 'sly', 'Sopen01g005480' => 'spe', 'Sopen01g042850' => 'spe', 'Sopen02g029370' => 'spe', 'Sopen03g028280' => 'spe', 'Sopen06g027870' => 'spe', 'Sopen10g032270' => 'spe', 'Sp5g18180' => 'spa', 'Sp6g12880' => 'spa', 'Sp6g30850' => 'spa', 'Sp7g22960' => 'spa', 'Sp7g34010' => 'spa', 'SpUn1326_0010' => 'spa', 'TAR371G0242' => 'tar', 'TAR622G0638' => 'tar', 'TAR628G1548' => 'tar', 'TAR629G1079' => 'tar', 'TAR629G3413' => 'tar', 'THA.LOC104804249' => 'tha', 'THA.LOC104808315' => 'tha', 'THA.LOC104809238' => 'tha', 'THA.LOC104825484' => 'tha', 'Thecc.01G025500' => 'tca', 'Thecc.03G015800' => 'tca', 'Thecc.03G018000' => 'tca', 'Thecc.03G134800' => 'tca', 'Thecc.04G014700' => 'tca', 'Thhalv10006991m.g' => 'esa', 'Thhalv10012707m.g' => 'esa', 'Thhalv10015739m.g' => 'esa', 'Thhalv10024553m.g' => 'esa', 'Thhalv10024673m.g' => 'esa', 'Thhalv10029187m.g' => 'esa', 'TPR.G12971' => 'tpr', 'TPR.G29396' => 'tpr', 'TPR.G33376' => 'tpr', 'TPR.G35508' => 'tpr', 'TPR.G35516' => 'tpr', 'TPR.G37317' => 'tpr', 'TPR.G37389' => 'tpr', 'TPR.G37523' => 'tpr', 'TPR.G559' => 'tpr', 'TWI14G0070' => 'twi', 'TWI14G0729' => 'twi', 'TWI18G0596' => 'twi', 'TWI39G0780' => 'twi', 'TWI39G0850' => 'twi', 'TWI73G1052' => 'twi', 'unitig_52.g17485' => 'ugi', 'unitig_61.g26355' => 'ugi', 'vmacro01040' => 'vma', 'vmacro16731' => 'vma', 'vmacro18270' => 'vma', 'vmacro19142' => 'vma', 'vmacro19407' => 'vma', 'vmacro19408' => 'vma', 'vmacro21899' => 'vma', 'vmacro21900' => 'vma', 'vmacro21901' => 'vma', 'VMungo0251G0490' => 'vmu', 'VMungo0251G1748' => 'vmu', 'VMungo1309G0421' => 'vmu', 'Zm00001eb086500' => 'zma', 'Zm00001eb150680' => 'zma', 'Zm00001eb162330' => 'zma', 'Zm00001eb203130' => 'zma', 'Zm00001eb369480' => 'zma', 'Zm00001eb382340' => 'zma', 'Zm00001eb416360' => 'zma' ), 'gf_id' => 'HOM05D000902', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000902' ), 'data_identifier' => 'HOM05D000902', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000902', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '663', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02470' => 'bna', 'A01p16260' => 'bna', 'A02p01680' => 'bna', 'A03p16600' => 'bna', 'A03p55660' => 'bna', 'A03p64160' => 'bna', 'A03p64170' => 'bna', 'A08p31900' => 'bna', 'A09p59530' => 'bna', 'A10p08230' => 'bna', 'A10p25090' => 'bna', 'Aa31LG3G7100' => 'aar', 'Aa31LG3G7110' => 'aar', 'Aa31LG6G13160' => 'aar', 'Aa31LG7G10770' => 'aar', 'Aa31LG7G3830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2723' => 'aag', 'Actinidia08045' => 'ach', 'Actinidia08888' => 'ach', 'Actinidia18333' => 'ach', 'Actinidia19334' => 'ach', 'Actinidia25552' => 'ach', 'Actinidia26089' => 'ach', 'Actinidia30615' => 'ach', 'Actinidia30616' => 'ach', 'Actinidia33083' => 'ach', 'Actinidia35762' => 'ach', 'Ah.02g110620' => 'amhyb', 'Ah.11g046390' => 'amhyb', 'AL1G31670' => 'aly', 'AL6G23730' => 'aly', 'AL7G14740' => 'aly', 'AL7G14750' => 'aly', 'AL7G14760' => 'aly', 'AL7G28220' => 'aly', 'AL8G24940' => 'aly', 'Aqoxy3G01665' => 'aox', 'Aqoxy3G02853' => 'aox', 'Aqoxy5G01513' => 'aox', 'Aqoxy5G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8SKA4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ75LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKDA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0LJZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7REX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZP4YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWX7I5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2QKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS0L9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPCD8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q161UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC7XCF' => 'arhy', 'AT1G19100' => 'ath', 'AT4G24970' => 'ath', 'AT4G36270' => 'ath', 'AT4G36280' => 'ath', 'AT4G36290' => 'ath', 'AT5G13130' => 'ath', 'AT5G50780' => 'ath', 'ATR0582G266' => 'atr', 'ATR0661G195' => 'atr', 'ATR1152G031' => 'atr', 'Atru.chr11.2382' => 'acertr', 'Atru.chr12.2337' => 'acertr', 'Atru.chr3.744' => 'acertr', 'Atru.chr6.1870' => 'acertr', 'Atru.chr9.2515' => 'acertr', 'AUR62004120' => 'cqu', 'AUR62005667' => 'cqu', 'AUR62007634' => 'cqu', 'AUR62008186' => 'cqu', 'AUR62008187' => 'cqu', 'AUR62008188' => 'cqu', 'AUR62027954' => 'cqu', 'AUR62028766' => 'cqu', 'AUR62028767' => 'cqu', 'AUR62028768' => 'cqu', 'AUR62028886' => 'cqu', 'AUR62029563' => 'cqu', 'AUR62038832' => 'cqu', 'BcaB01g04149' => 'bca', 'BcaB03g12940' => 'bca', 'BcaB03g13090' => 'bca', 'BcaB03g14466' => 'bca', 'BcaB05g24035' => 'bca', 'BcaC01g06050' => 'bca', 'BcaC04g19148' => 'bca', 'BcaC04g20761' => 'bca', 'BcaC06g32845' => 'bca', 'BcaC07g41274' => 'bca', 'BcaC09g50827' => 'bca', 'BcaNung00741' => 'bca', 'BcaNung00742' => 'bca', 'BcaNung01859' => 'bca', 'BcaNung03985' => 'bca', 'BcaNung03989' => 'bca', 'BcaNung05661' => 'bca', 'BolC1t00257H' => 'bol', 'BolC1t01956H' => 'bol', 'BolC2t06534H' => 'bol', 'BolC3t14334H' => 'bol', 'BolC5t30451H' => 'bol', 'BolC7t45880H' => 'bol', 'BolC7t46586H' => 'bol', 'BolC8t49301H' => 'bol', 'BolC8t51837H' => 'bol', 'BolC9t56822H' => 'bol', 'BolC9t59235H' => 'bol', 'BraA01t00234Z' => 'bra', 'BraA01t01563Z' => 'bra', 'BraA02t05147Z' => 'bra', 'BraA03t10947Z' => 'bra', 'BraA03t14633Z' => 'bra', 'BraA08t35112Z' => 'bra', 'BraA09t41330Z' => 'bra', 'BraA10t44570Z' => 'bra', 'C01p02670' => 'bna', 'C01p20260' => 'bna', 'C02p05890' => 'bna', 'C03p19530' => 'bna', 'C05p17470' => 'bna', 'C07p53900' => 'bna', 'C07p61630' => 'bna', 'C08p16800' => 'bna', 'C08p42810' => 'bna', 'C09p39480' => 'bna', 'C09p63980' => 'bna', 'CAN.G1001.7' => 'can', 'CAN.G1034.55' => 'can', 'CAN.G143.7' => 'can', 'CAN.G3340.1' => 'can', 'CAN.G358.19' => 'can', 'CAN.G373.2' => 'can', 'CAN.G674.16' => 'can', 'CAN.G674.17' => 'can', 'CAN.G674.18' => 'can', 'CAN.G732.2' => 'can', 'CAN.G732.3' => 'can', 'CAN.G993.39' => 'can', 'CANSAT01G2052' => 'cansat', 'CANSAT80G0070' => 'cansat', 'CANSAT80G0483' => 'cansat', 'CANSAT80G0625' => 'cansat', 'CARHR019690' => 'chi', 'CARHR080280' => 'chi', 'CARHR152750' => 'chi', 'CARHR152760' => 'chi', 'CARHR152770' => 'chi', 'CARHR200340' => 'chi', 'CARHR232370' => 'chi', 'CARHR244670' => 'chi', 'CARHR244680' => 'chi', 'CARHR257520' => 'chi', 'Carub.0001s1872' => 'cru', 'Carub.0006s1130' => 'cru', 'Carub.0007s0396' => 'cru', 'Carub.0007s0397' => 'cru', 'Carub.0007s1608' => 'cru', 'Carub.0008s1068' => 'cru', 'Carub.0008s1077' => 'cru', 'Ca_16158_v3' => 'car', 'Ca_17571_v3' => 'car', 'Ca_21936_v3' => 'car', 'Ca_22350_v3' => 'car', 'CBR_g22445' => 'cbr', 'CBR_g26290' => 'cbr', 'Cc04_g09610' => 'ccan', 'Cc04_g12280' => 'ccan', 'Cc07_g10230' => 'ccan', 'CDE02G0093' => 'cde', 'CDE02G0701' => 'cde', 'CDE04G1050' => 'cde', 'CDE05G1833' => 'cde', 'CDE05G3058' => 'cde', 'CDE05G3380' => 'cde', 'CDE06G0536' => 'cde', 'Cfa006923' => 'cfa', 'Cfa009402' => 'cfa', 'Cfa018751' => 'cfa', 'Cfa019164' => 'cfa', 'Cfa022935' => 'cfa', 'Ciclev10019081m.g' => 'ccl', 'Ciclev10025076m.g' => 'ccl', 'Ciclev10030712m.g' => 'ccl', 'Ciclev10033760m.g' => 'ccl', 'CiPaw.05G105600' => 'cil', 'CiPaw.08G136700' => 'cil', 'CiPaw.11G003900' => 'cil', 'CiPaw.11G023700' => 'cil', 'CiPaw.12G003700' => 'cil', 'ClCG06G017100' => 'cla', 'ClCG06G018110' => 'cla', 'ClCG07G008800' => 'cla', 'ClCG07G015330' => 'cla', 'COL.COLO4_13698' => 'col', 'COL.COLO4_16659' => 'col', 'COL.COLO4_21986' => 'col', 'COL.COLO4_24049' => 'col', 'COL.COLO4_29061' => 'col', 'COL.COLO4_29075' => 'col', 'COL.COLO4_30094' => 'col', 'Cpa.g.c33689' => 'cpa', 'Cpa.g.sc108.39' => 'cpa', 'Cpa.g.sc108.41' => 'cpa', 'Cpa.g.sc1163.1' => 'cpa', 'Cpa.g.sc4.155' => 'cpa', 'Cpa.g.sc6.194' => 'cpa', 'CsaV3_1G000340' => 'csa', 'CsaV3_1G001400' => 'csa', 'CsaV3_4G002220' => 'csa', 'CsaV3_4G005370' => 'csa', 'CSS0007487' => 'camsi', 'CSS0008066' => 'camsi', 'CSS0009120' => 'camsi', 'CSS0015512' => 'camsi', 'CSS0022409' => 'camsi', 'CSS0025358' => 'camsi', 'CSS0044547' => 'camsi', 'DCAR_013057' => 'dca', 'DCAR_015058' => 'dca', 'DCAR_016027' => 'dca', 'DCAR_017327' => 'dca', 'DCAR_020743' => 'dca', 'DCAR_026157' => 'dca', 'DCAR_032339' => 'dca', 'DCAR_032340' => 'dca', 'Dinv11200' => 'din', 'Dinv11201' => 'din', 'Dinv20631' => 'din', 'Dinv23182' => 'din', 'Dinv33466' => 'din', 'Dinv33583' => 'din', 'Dinv38565' => 'din', 'Duzib068G0200' => 'dzi', 'Duzib147G0132' => 'dzi', 'Duzib147G0635' => 'dzi', 'Duzib205G1670' => 'dzi', 'Duzib251G0606' => 'dzi', 'ECA232G3336' => 'eca', 'ECA232G3763' => 'eca', 'ECA232G4845' => 'eca', 'ECA234G1607' => 'eca', 'ECA246G0932' => 'eca', 'ECA247G0781' => 'eca', 'ECA247G1932' => 'eca', 'ECA247G2079' => 'eca', 'ECA247G3338' => 'eca', 'ECA247G4115' => 'eca', 'EL10Ac3g06552' => 'bvu', 'EL10Ac5g10721' => 'bvu', 'EL10Ac5g10722' => 'bvu', 'EL10Ac5g10723' => 'bvu', 'EL10Ac5g11361' => 'bvu', 'EL10Ac6g13553' => 'bvu', 'EL10As8g23872' => 'bvu', 'Eucgr.B00250' => 'egr', 'Eucgr.B00251' => 'egr', 'Eucgr.B03533' => 'egr', 'Eucgr.I02381' => 'egr', 'Eucgr.K02700' => 'egr', 'FAN02G0174' => 'fan', 'FAN02G3146' => 'fan', 'FAN04G1672' => 'fan', 'FAN04G2273' => 'fan', 'FAN05G2791' => 'fan', 'FAN05G4035' => 'fan', 'FAN07G0834' => 'fan', 'FAN08G1198' => 'fan', 'FAN09G4182' => 'fan', 'FAN12G0496' => 'fan', 'FAN13G1027' => 'fan', 'FAN13G2951' => 'fan', 'FAN14G0705' => 'fan', 'FAN14G0720' => 'fan', 'FAN17G0201' => 'fan', 'FAN17G2665' => 'fan', 'FAN18G1456' => 'fan', 'FAN18G1525' => 'fan', 'FAN18G3500' => 'fan', 'FAN28G2670' => 'fan', 'FvH4_1g12391' => 'fve', 'FvH4_4g23220' => 'fve', 'FvH4_5g08810' => 'fve', 'FvH4_5g28960' => 'fve', 'FvH4_6g42820' => 'fve', 'FvH4_6g51110' => 'fve', 'Glyma.02G051802' => 'gma', 'Glyma.04G185300' => 'gma', 'Glyma.05G202900' => 'gma', 'Glyma.08G010300' => 'gma', 'Glyma.16G131900' => 'gma', 'Glyma.17G087900' => 'gma', 'Gohir.A07G048600' => 'ghi', 'Gohir.A11G179000' => 'ghi', 'Gohir.A12G140900' => 'ghi', 'Gohir.A12G140950' => 'ghi', 'Gohir.A12G191700' => 'ghi', 'Gohir.A13G086300' => 'ghi', 'Gohir.D07G052900' => 'ghi', 'Gohir.D11G186600' => 'ghi', 'Gohir.D12G145575' => 'ghi', 'Gohir.D12G145650' => 'ghi', 'Gohir.D12G145725' => 'ghi', 'Gohir.D12G194050' => 'ghi', 'Gohir.D13G091800' => 'ghi', 'Gorai.001G055900' => 'gra', 'Gorai.007G198400' => 'gra', 'Gorai.008G157000' => 'gra', 'Gorai.008G157100' => 'gra', 'Gorai.008G208700' => 'gra', 'Gorai.010G138700' => 'gra', 'GSVIVG01000977001' => 'vvi', 'GSVIVG01007708001' => 'vvi', 'GSVIVG01008587001' => 'vvi', 'GSVIVG01018849001' => 'vvi', 'GSVIVG01032432001' => 'vvi', 'HanXRQChr02g0034131' => 'han', 'HanXRQChr02g0035981' => 'han', 'HanXRQChr02g0035991' => 'han', 'HanXRQChr05g0155611' => 'han', 'HanXRQChr05g0155621' => 'han', 'HanXRQChr08g0236501' => 'han', 'HanXRQChr09g0261321' => 'han', 'HanXRQChr09g0272081' => 'han', 'HanXRQChr10g0310741' => 'han', 'HanXRQChr11g0325591' => 'han', 'HanXRQChr12g0385691' => 'han', 'HanXRQChr13g0387801' => 'han', 'HanXRQChr15g0463011' => 'han', 'Haze_03826' => 'cav', 'Haze_03827' => 'cav', 'Haze_07183' => 'cav', 'Haze_07537' => 'cav', 'Haze_07539' => 'cav', 'Haze_12461' => 'cav', 'Haze_16115' => 'cav', 'Haze_16808' => 'cav', 'Haze_18531' => 'cav', 'Hma1.2p1_0046F.1_g026700' => 'hma', 'Hma1.2p1_0046F.1_g026710' => 'hma', 'Hma1.2p1_0168F.1_g074340' => 'hma', 'Hma1.2p1_0266F.1_g107030' => 'hma', 'Hma1.2p1_0266F.1_g107060' => 'hma', 'Hma1.2p1_0275F.1_g110510' => 'hma', 'Hma1.2p1_0592F.1_g185490' => 'hma', 'Hma1.2p1_0592F.1_g185500' => 'hma', 'Hma1.2p1_0592F.1_g185510' => 'hma', 'Hma1.2p1_0592F.1_g185520' => 'hma', 'Hma1.2p1_0592F.1_g185530' => 'hma', 'Hma1.2p1_0818F.1_g223450' => 'hma', 'HPP92_009708' => 'vpl', 'HPP92_009793' => 'vpl', 'HPP92_009796' => 'vpl', 'HPP92_009797' => 'vpl', 'HPP92_014940' => 'vpl', 'HPP92_014988' => 'vpl', 'Hund02463' => 'sun', 'Hund02760' => 'sun', 'Hund05071' => 'sun', 'Hund10108' => 'sun', 'Hund11204' => 'sun', 'Hund14016' => 'sun', 'Hund16464' => 'sun', 'Lalb_Chr09g0333391' => 'lal', 'Lalb_Chr11g0070461' => 'lal', 'Lalb_Chr12g0201671' => 'lal', 'Lalb_Chr13g0297161' => 'lal', 'Lj1g0002823' => 'lja', 'Lj3C1074T6' => 'lonja', 'Lj4A212T28' => 'lonja', 'Lj4g0005516' => 'lja', 'Lj4g0013705' => 'lja', 'Lj4g0027865' => 'lja', 'Lj5C92G16' => 'lonja', 'Lj5C92T12' => 'lonja', 'Lj7C596T3' => 'lonja', 'Lj9A446G59' => 'lonja', 'Lj9A482G21' => 'lonja', 'Lsat_1_v5_gn_1_28261' => 'lsa', 'Lsat_1_v5_gn_1_28281' => 'lsa', 'Lsat_1_v5_gn_1_32721' => 'lsa', 'Lsat_1_v5_gn_4_151760' => 'lsa', 'Lsat_1_v5_gn_4_2120' => 'lsa', 'Lsat_1_v5_gn_4_75761' => 'lsa', 'Lsat_1_v5_gn_5_10920' => 'lsa', 'Manes.02G099900' => 'mes', 'Manes.11G096200' => 'mes', 'Manes.12G007200' => 'mes', 'Manes.14G048300' => 'mes', 'Manes.17G114700' => 'mes', 'Mapoly0002s0070' => 'mpo', 'Mapoly0029s0099' => 'mpo', 'MBI07_g24742_MAGBIO' => 'mbi', 'MBI10_g27988_MAGBIO' => 'mbi', 'MBI11_g13057_MAGBIO' => 'mbi', 'MD02G1137200' => 'mdo', 'MD06G1137200' => 'mdo', 'MD07G1122300' => 'mdo', 'MD09G1078200' => 'mdo', 'MD13G1123700' => 'mdo', 'MD14G1151900' => 'mdo', 'MD17G1030900' => 'mdo', 'MD17G1068200' => 'mdo', 'MD17G1068600' => 'mdo', 'Medtr3g077540' => 'mtr', 'Medtr4g105530' => 'mtr', 'Medtr8g076580' => 'mtr', 'Medtr8g076590' => 'mtr', 'Medtr8g096410' => 'mtr', 'MELO3C016411.2' => 'cme', 'MELO3C017780.2' => 'cme', 'MELO3C022560.2' => 'cme', 'MELO3C026187.2' => 'cme', 'MELO3C026286.2' => 'cme', 'MELO3C032854.2' => 'cme', 'Migut.H02495' => 'egut', 'Migut.I00561' => 'egut', 'Migut.K01015' => 'egut', 'Migut.K01016' => 'egut', 'Migut.L00743' => 'egut', 'Migut.L00744' => 'egut', 'Migut.L00746' => 'egut', 'Migut.L00798' => 'egut', 'Migut.L00799' => 'egut', 'Migut.N02096' => 'egut', 'MSTRG.11259' => 'ama', 'MSTRG.23142' => 'ama', 'MSTRG.2499' => 'ama', 'Nitab4.5_0000003g0730' => 'nta', 'Nitab4.5_0000137g0020' => 'nta', 'Nitab4.5_0000721g0210' => 'nta', 'Nitab4.5_0000723g0050' => 'nta', 'Nitab4.5_0000913g0070' => 'nta', 'Nitab4.5_0001332g0040' => 'nta', 'Nitab4.5_0001771g0050' => 'nta', 'Nitab4.5_0001918g0050' => 'nta', 'Nitab4.5_0002686g0030' => 'nta', 'Nitab4.5_0003156g0020' => 'nta', 'Nitab4.5_0003383g0040' => 'nta', 'Nitab4.5_0003918g0010' => 'nta', 'Nitab4.5_0006760g0010' => 'nta', 'Nn1g05981' => 'nnu', 'Nn1g06288' => 'nnu', 'Nn3g16371' => 'nnu', 'Nn3g16786' => 'nnu', 'Nn4g22232' => 'nnu', 'Oeu005144.1' => 'oeu', 'Oeu005145.1' => 'oeu', 'Oeu011348.1' => 'oeu', 'Oeu016415.1' => 'oeu', 'Oeu023501.1' => 'oeu', 'Oeu044473.1' => 'oeu', 'Oeu048892.2' => 'oeu', 'Os01g0549200' => 'osa', 'Os02g0469300' => 'osa', 'Os04g0311100' => 'osa', 'Os06g0474900' => 'osa', 'Os10g0181700' => 'osa', 'Os11g0454800' => 'osa', 'Peaxi162Scf00037g00714' => 'pax', 'Peaxi162Scf00084g01217' => 'pax', 'Peaxi162Scf00257g00217' => 'pax', 'Peaxi162Scf00516g00215' => 'pax', 'Peaxi162Scf00689g00123' => 'pax', 'PGR044G2719' => 'pgr', 'PGR083G1360' => 'pgr', 'PGR102G2849' => 'pgr', 'PGR119G2534' => 'pgr', 'PGSC0003DMG400003538' => 'stu', 'PGSC0003DMG400028138' => 'stu', 'PGSC0003DMG400031732' => 'stu', 'PGSC0003DMG400038165' => 'stu', 'Phvul.002G284600' => 'pvu', 'Phvul.003G258200' => 'pvu', 'Phvul.009G176500' => 'pvu', 'Potri.003G167201' => 'ptr', 'Potri.005G118400' => 'ptr', 'Potri.012G089000' => 'ptr', 'Potri.012G102800' => 'ptr', 'Potri.015G079400' => 'ptr', 'Potri.015G100900' => 'ptr', 'Pp3c14_9810' => 'ppa', 'Pp3c15_10450' => 'ppa', 'Pp3c20_19150' => 'ppa', 'Pp3c23_12740' => 'ppa', 'Pp3c23_6310' => 'ppa', 'Pp3c24_3720' => 'ppa', 'Pp3c27_2580' => 'ppa', 'Pp3c9_8990' => 'ppa', 'PRCOL_00002854' => 'pco', 'Prupe.1G221200' => 'ppe', 'Prupe.3G289000' => 'ppe', 'Prupe.5G147000' => 'ppe', 'Prupe.6G157300' => 'ppe', 'Prupe.7G163400' => 'ppe', 'Psat0s2177g0040' => 'psa', 'Psat3g174760' => 'psa', 'Psat3g192160' => 'psa', 'Psat4g058520' => 'psa', 'Psat4g096840' => 'psa', 'Psat7g037320' => 'psa', 'PSO017G1274' => 'pso', 'PSO017G5166' => 'pso', 'PSO063G4558' => 'pso', 'PSO170G4458' => 'pso', 'PSO170G5005' => 'pso', 'PSO210G6156' => 'pso', 'PSO210G6635' => 'pso', 'PSO210G7397' => 'pso', 'PSO210G7700' => 'pso', 'PSO455G0035' => 'pso', 'PSO455G0180' => 'pso', 'PSO478G4515' => 'pso', 'PSO832G1305' => 'pso', 'PSO832G3489' => 'pso', 'QL02p075247' => 'qlo', 'QL03p051148' => 'qlo', 'QL05p010313' => 'qlo', 'QL06p034627' => 'qlo', 'QL10p001889' => 'qlo', 'QL10p010846' => 'qlo', 'RcHm_v2.0_Chr1g0350621' => 'rch', 'RcHm_v2.0_Chr1g0350641' => 'rch', 'RcHm_v2.0_Chr2g0092891' => 'rch', 'RcHm_v2.0_Chr2g0100251' => 'rch', 'RcHm_v2.0_Chr2g0158661' => 'rch', 'RcHm_v2.0_Chr2g0172741' => 'rch', 'RcHm_v2.0_Chr4g0429571' => 'rch', 'RcHm_v2.0_Chr5g0042471' => 'rch', 'RcHm_v2.0_Chr7g0189451' => 'rch', 'Rhsim08G0052000' => 'rsi', 'Rhsim08G0174400' => 'rsi', 'Rhsim08G0193200' => 'rsi', 'Rhsim10G0214800' => 'rsi', 'Rhsim10G0214900' => 'rsi', 'Rhsim10G0215000' => 'rsi', 'Rhsim12G0022900' => 'rsi', 'Rhsim12G0177500' => 'rsi', 'Rhsim12G0177700' => 'rsi', 'Sabra03G0122600' => 'sbr', 'Sabra05G0097400' => 'sbr', 'Sabra12G0064100' => 'sbr', 'Sabra15G0121300' => 'sbr', 'SalBow2G0642' => 'sbo', 'SalBow5G2667' => 'sbo', 'SalBow5G4873' => 'sbo', 'SalBow8G2395' => 'sbo', 'Sc03g0003290' => 'sci', 'Sc10g0010130' => 'sci', 'Sc22g0003650' => 'sci', 'Sed0001603' => 'sed', 'Sed0004259' => 'sed', 'Sed0006789' => 'sed', 'Sed0011838' => 'sed', 'Sed0012964' => 'sed', 'Sed0016383' => 'sed', 'Sed0019010' => 'sed', 'Sed0020188' => 'sed', 'SEGI_04702' => 'sgi', 'SEGI_17231' => 'sgi', 'SEGI_18877' => 'sgi', 'SEGI_25196' => 'sgi', 'SEGI_25515' => 'sgi', 'SEGI_28445' => 'sgi', 'SEGI_37452' => 'sgi', 'SGA_v2.0_scaffold188G40336' => 'sas', 'SGA_v2.0_scaffold228G43247' => 'sas', 'SGA_v2.0_scaffold280G46853' => 'sas', 'SGA_v2.0_scaffold34G13808' => 'sas', 'SGA_v2.0_scaffold40G15576' => 'sas', 'SGA_v2.0_scaffold611G53188' => 'sas', 'SGA_v2.0_scaffold78G25461' => 'sas', 'SGA_v2.0_scaffold90G27888' => 'sas', 'SHI08601' => 'shi', 'SHI08606' => 'shi', 'SHI17117' => 'shi', 'SHI17119' => 'shi', 'SMO118G0201' => 'smo', 'SMO169G0247' => 'smo', 'SMO176G0006' => 'smo', 'SMO176G0015' => 'smo', 'SMO202G0006' => 'smo', 'SMO240G0050' => 'smo', 'SMO286G0009' => 'smo', 'SMO338G0033' => 'smo', 'SMO356G0533' => 'smo', 'SMO364G0382' => 'smo', 'SMO367G0166' => 'smo', 'SMO367G1098' => 'smo', 'Solyc01g009920.3' => 'sly', 'Solyc01g099300.3' => 'sly', 'Solyc02g084700.3' => 'sly', 'Solyc03g097520.3' => 'sly', 'Solyc06g071580.3' => 'sly', 'Solyc10g081760.3' => 'sly', 'Sopen01g005480' => 'spe', 'Sopen01g042850' => 'spe', 'Sopen02g029370' => 'spe', 'Sopen03g028280' => 'spe', 'Sopen06g027870' => 'spe', 'Sopen10g032270' => 'spe', 'Sp5g18180' => 'spa', 'Sp6g12880' => 'spa', 'Sp6g30850' => 'spa', 'Sp7g22960' => 'spa', 'Sp7g34010' => 'spa', 'SpUn1326_0010' => 'spa', 'TAR371G0242' => 'tar', 'TAR622G0638' => 'tar', 'TAR628G1548' => 'tar', 'TAR629G1079' => 'tar', 'TAR629G3413' => 'tar', 'THA.LOC104804249' => 'tha', 'THA.LOC104808315' => 'tha', 'THA.LOC104809238' => 'tha', 'THA.LOC104825484' => 'tha', 'Thecc.01G025500' => 'tca', 'Thecc.03G015800' => 'tca', 'Thecc.03G018000' => 'tca', 'Thecc.03G134800' => 'tca', 'Thecc.04G014700' => 'tca', 'Thhalv10006991m.g' => 'esa', 'Thhalv10012707m.g' => 'esa', 'Thhalv10015739m.g' => 'esa', 'Thhalv10024553m.g' => 'esa', 'Thhalv10024673m.g' => 'esa', 'Thhalv10029187m.g' => 'esa', 'TPR.G12971' => 'tpr', 'TPR.G29396' => 'tpr', 'TPR.G33376' => 'tpr', 'TPR.G35508' => 'tpr', 'TPR.G35516' => 'tpr', 'TPR.G37317' => 'tpr', 'TPR.G37389' => 'tpr', 'TPR.G37523' => 'tpr', 'TPR.G559' => 'tpr', 'TWI14G0070' => 'twi', 'TWI14G0729' => 'twi', 'TWI18G0596' => 'twi', 'TWI39G0780' => 'twi', 'TWI39G0850' => 'twi', 'TWI73G1052' => 'twi', 'unitig_52.g17485' => 'ugi', 'unitig_61.g26355' => 'ugi', 'vmacro01040' => 'vma', 'vmacro16731' => 'vma', 'vmacro18270' => 'vma', 'vmacro19142' => 'vma', 'vmacro19407' => 'vma', 'vmacro19408' => 'vma', 'vmacro21899' => 'vma', 'vmacro21900' => 'vma', 'vmacro21901' => 'vma', 'VMungo0251G0490' => 'vmu', 'VMungo0251G1748' => 'vmu', 'VMungo1309G0421' => 'vmu', 'Zm00001eb086500' => 'zma', 'Zm00001eb150680' => 'zma', 'Zm00001eb162330' => 'zma', 'Zm00001eb203130' => 'zma', 'Zm00001eb369480' => 'zma', 'Zm00001eb382340' => 'zma', 'Zm00001eb416360' => 'zma' ) $gf_id = 'HOM05D000902' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000902' ) $data_identifier = 'HOM05D000902' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 13, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 10, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 6, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 9, 'hma' => (int) 12, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 4, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 6, 'ppa' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 6, 'rch' => (int) 9, 'rsi' => (int) 9, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 12, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 3, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416360' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000902', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '663', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02470' => 'bna', 'A01p16260' => 'bna', 'A02p01680' => 'bna', 'A03p16600' => 'bna', 'A03p55660' => 'bna', 'A03p64160' => 'bna', 'A03p64170' => 'bna', 'A08p31900' => 'bna', 'A09p59530' => 'bna', 'A10p08230' => 'bna', 'A10p25090' => 'bna', 'Aa31LG3G7100' => 'aar', 'Aa31LG3G7110' => 'aar', 'Aa31LG6G13160' => 'aar', 'Aa31LG7G10770' => 'aar', 'Aa31LG7G3830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2723' => 'aag', 'Actinidia08045' => 'ach', 'Actinidia08888' => 'ach', 'Actinidia18333' => 'ach', 'Actinidia19334' => 'ach', 'Actinidia25552' => 'ach', 'Actinidia26089' => 'ach', 'Actinidia30615' => 'ach', 'Actinidia30616' => 'ach', 'Actinidia33083' => 'ach', 'Actinidia35762' => 'ach', 'Ah.02g110620' => 'amhyb', 'Ah.11g046390' => 'amhyb', 'AL1G31670' => 'aly', 'AL6G23730' => 'aly', 'AL7G14740' => 'aly', 'AL7G14750' => 'aly', 'AL7G14760' => 'aly', 'AL7G28220' => 'aly', 'AL8G24940' => 'aly', 'Aqoxy3G01665' => 'aox', 'Aqoxy3G02853' => 'aox', 'Aqoxy5G01513' => 'aox', 'Aqoxy5G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8SKA4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ75LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKDA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0LJZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7REX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZP4YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWX7I5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2QKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS0L9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPCD8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q161UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC7XCF' => 'arhy', 'AT1G19100' => 'ath', 'AT4G24970' => 'ath', 'AT4G36270' => 'ath', 'AT4G36280' => 'ath', 'AT4G36290' => 'ath', 'AT5G13130' => 'ath', 'AT5G50780' => 'ath', 'ATR0582G266' => 'atr', 'ATR0661G195' => 'atr', 'ATR1152G031' => 'atr', 'Atru.chr11.2382' => 'acertr', 'Atru.chr12.2337' => 'acertr', 'Atru.chr3.744' => 'acertr', 'Atru.chr6.1870' => 'acertr', 'Atru.chr9.2515' => 'acertr', 'AUR62004120' => 'cqu', 'AUR62005667' => 'cqu', 'AUR62007634' => 'cqu', 'AUR62008186' => 'cqu', 'AUR62008187' => 'cqu', 'AUR62008188' => 'cqu', 'AUR62027954' => 'cqu', 'AUR62028766' => 'cqu', 'AUR62028767' => 'cqu', 'AUR62028768' => 'cqu', 'AUR62028886' => 'cqu', 'AUR62029563' => 'cqu', 'AUR62038832' => 'cqu', 'BcaB01g04149' => 'bca', 'BcaB03g12940' => 'bca', 'BcaB03g13090' => 'bca', 'BcaB03g14466' => 'bca', 'BcaB05g24035' => 'bca', 'BcaC01g06050' => 'bca', 'BcaC04g19148' => 'bca', 'BcaC04g20761' => 'bca', 'BcaC06g32845' => 'bca', 'BcaC07g41274' => 'bca', 'BcaC09g50827' => 'bca', 'BcaNung00741' => 'bca', 'BcaNung00742' => 'bca', 'BcaNung01859' => 'bca', 'BcaNung03985' => 'bca', 'BcaNung03989' => 'bca', 'BcaNung05661' => 'bca', 'BolC1t00257H' => 'bol', 'BolC1t01956H' => 'bol', 'BolC2t06534H' => 'bol', 'BolC3t14334H' => 'bol', 'BolC5t30451H' => 'bol', 'BolC7t45880H' => 'bol', 'BolC7t46586H' => 'bol', 'BolC8t49301H' => 'bol', 'BolC8t51837H' => 'bol', 'BolC9t56822H' => 'bol', 'BolC9t59235H' => 'bol', 'BraA01t00234Z' => 'bra', 'BraA01t01563Z' => 'bra', 'BraA02t05147Z' => 'bra', 'BraA03t10947Z' => 'bra', 'BraA03t14633Z' => 'bra', 'BraA08t35112Z' => 'bra', 'BraA09t41330Z' => 'bra', 'BraA10t44570Z' => 'bra', 'C01p02670' => 'bna', 'C01p20260' => 'bna', 'C02p05890' => 'bna', 'C03p19530' => 'bna', 'C05p17470' => 'bna', 'C07p53900' => 'bna', 'C07p61630' => 'bna', 'C08p16800' => 'bna', 'C08p42810' => 'bna', 'C09p39480' => 'bna', 'C09p63980' => 'bna', 'CAN.G1001.7' => 'can', 'CAN.G1034.55' => 'can', 'CAN.G143.7' => 'can', 'CAN.G3340.1' => 'can', 'CAN.G358.19' => 'can', 'CAN.G373.2' => 'can', 'CAN.G674.16' => 'can', 'CAN.G674.17' => 'can', 'CAN.G674.18' => 'can', 'CAN.G732.2' => 'can', 'CAN.G732.3' => 'can', 'CAN.G993.39' => 'can', 'CANSAT01G2052' => 'cansat', 'CANSAT80G0070' => 'cansat', 'CANSAT80G0483' => 'cansat', 'CANSAT80G0625' => 'cansat', 'CARHR019690' => 'chi', 'CARHR080280' => 'chi', 'CARHR152750' => 'chi', 'CARHR152760' => 'chi', 'CARHR152770' => 'chi', 'CARHR200340' => 'chi', 'CARHR232370' => 'chi', 'CARHR244670' => 'chi', 'CARHR244680' => 'chi', 'CARHR257520' => 'chi', 'Carub.0001s1872' => 'cru', 'Carub.0006s1130' => 'cru', 'Carub.0007s0396' => 'cru', 'Carub.0007s0397' => 'cru', 'Carub.0007s1608' => 'cru', 'Carub.0008s1068' => 'cru', 'Carub.0008s1077' => 'cru', 'Ca_16158_v3' => 'car', 'Ca_17571_v3' => 'car', 'Ca_21936_v3' => 'car', 'Ca_22350_v3' => 'car', 'CBR_g22445' => 'cbr', 'CBR_g26290' => 'cbr', 'Cc04_g09610' => 'ccan', 'Cc04_g12280' => 'ccan', 'Cc07_g10230' => 'ccan', 'CDE02G0093' => 'cde', 'CDE02G0701' => 'cde', 'CDE04G1050' => 'cde', 'CDE05G1833' => 'cde', 'CDE05G3058' => 'cde', 'CDE05G3380' => 'cde', 'CDE06G0536' => 'cde', 'Cfa006923' => 'cfa', 'Cfa009402' => 'cfa', 'Cfa018751' => 'cfa', 'Cfa019164' => 'cfa', 'Cfa022935' => 'cfa', 'Ciclev10019081m.g' => 'ccl', 'Ciclev10025076m.g' => 'ccl', 'Ciclev10030712m.g' => 'ccl', 'Ciclev10033760m.g' => 'ccl', 'CiPaw.05G105600' => 'cil', 'CiPaw.08G136700' => 'cil', 'CiPaw.11G003900' => 'cil', 'CiPaw.11G023700' => 'cil', 'CiPaw.12G003700' => 'cil', 'ClCG06G017100' => 'cla', 'ClCG06G018110' => 'cla', 'ClCG07G008800' => 'cla', 'ClCG07G015330' => 'cla', 'COL.COLO4_13698' => 'col', 'COL.COLO4_16659' => 'col', 'COL.COLO4_21986' => 'col', 'COL.COLO4_24049' => 'col', 'COL.COLO4_29061' => 'col', 'COL.COLO4_29075' => 'col', 'COL.COLO4_30094' => 'col', 'Cpa.g.c33689' => 'cpa', 'Cpa.g.sc108.39' => 'cpa', 'Cpa.g.sc108.41' => 'cpa', 'Cpa.g.sc1163.1' => 'cpa', 'Cpa.g.sc4.155' => 'cpa', 'Cpa.g.sc6.194' => 'cpa', 'CsaV3_1G000340' => 'csa', 'CsaV3_1G001400' => 'csa', 'CsaV3_4G002220' => 'csa', 'CsaV3_4G005370' => 'csa', 'CSS0007487' => 'camsi', 'CSS0008066' => 'camsi', 'CSS0009120' => 'camsi', 'CSS0015512' => 'camsi', 'CSS0022409' => 'camsi', 'CSS0025358' => 'camsi', 'CSS0044547' => 'camsi', 'DCAR_013057' => 'dca', 'DCAR_015058' => 'dca', 'DCAR_016027' => 'dca', 'DCAR_017327' => 'dca', 'DCAR_020743' => 'dca', 'DCAR_026157' => 'dca', 'DCAR_032339' => 'dca', 'DCAR_032340' => 'dca', 'Dinv11200' => 'din', 'Dinv11201' => 'din', 'Dinv20631' => 'din', 'Dinv23182' => 'din', 'Dinv33466' => 'din', 'Dinv33583' => 'din', 'Dinv38565' => 'din', 'Duzib068G0200' => 'dzi', 'Duzib147G0132' => 'dzi', 'Duzib147G0635' => 'dzi', 'Duzib205G1670' => 'dzi', 'Duzib251G0606' => 'dzi', 'ECA232G3336' => 'eca', 'ECA232G3763' => 'eca', 'ECA232G4845' => 'eca', 'ECA234G1607' => 'eca', 'ECA246G0932' => 'eca', 'ECA247G0781' => 'eca', 'ECA247G1932' => 'eca', 'ECA247G2079' => 'eca', 'ECA247G3338' => 'eca', 'ECA247G4115' => 'eca', 'EL10Ac3g06552' => 'bvu', 'EL10Ac5g10721' => 'bvu', 'EL10Ac5g10722' => 'bvu', 'EL10Ac5g10723' => 'bvu', 'EL10Ac5g11361' => 'bvu', 'EL10Ac6g13553' => 'bvu', 'EL10As8g23872' => 'bvu', 'Eucgr.B00250' => 'egr', 'Eucgr.B00251' => 'egr', 'Eucgr.B03533' => 'egr', 'Eucgr.I02381' => 'egr', 'Eucgr.K02700' => 'egr', 'FAN02G0174' => 'fan', 'FAN02G3146' => 'fan', 'FAN04G1672' => 'fan', 'FAN04G2273' => 'fan', 'FAN05G2791' => 'fan', 'FAN05G4035' => 'fan', 'FAN07G0834' => 'fan', 'FAN08G1198' => 'fan', 'FAN09G4182' => 'fan', 'FAN12G0496' => 'fan', 'FAN13G1027' => 'fan', 'FAN13G2951' => 'fan', 'FAN14G0705' => 'fan', 'FAN14G0720' => 'fan', 'FAN17G0201' => 'fan', 'FAN17G2665' => 'fan', 'FAN18G1456' => 'fan', 'FAN18G1525' => 'fan', 'FAN18G3500' => 'fan', 'FAN28G2670' => 'fan', 'FvH4_1g12391' => 'fve', 'FvH4_4g23220' => 'fve', 'FvH4_5g08810' => 'fve', 'FvH4_5g28960' => 'fve', 'FvH4_6g42820' => 'fve', 'FvH4_6g51110' => 'fve', 'Glyma.02G051802' => 'gma', 'Glyma.04G185300' => 'gma', 'Glyma.05G202900' => 'gma', 'Glyma.08G010300' => 'gma', 'Glyma.16G131900' => 'gma', 'Glyma.17G087900' => 'gma', 'Gohir.A07G048600' => 'ghi', 'Gohir.A11G179000' => 'ghi', 'Gohir.A12G140900' => 'ghi', 'Gohir.A12G140950' => 'ghi', 'Gohir.A12G191700' => 'ghi', 'Gohir.A13G086300' => 'ghi', 'Gohir.D07G052900' => 'ghi', 'Gohir.D11G186600' => 'ghi', 'Gohir.D12G145575' => 'ghi', 'Gohir.D12G145650' => 'ghi', 'Gohir.D12G145725' => 'ghi', 'Gohir.D12G194050' => 'ghi', 'Gohir.D13G091800' => 'ghi', 'Gorai.001G055900' => 'gra', 'Gorai.007G198400' => 'gra', 'Gorai.008G157000' => 'gra', 'Gorai.008G157100' => 'gra', 'Gorai.008G208700' => 'gra', 'Gorai.010G138700' => 'gra', 'GSVIVG01000977001' => 'vvi', 'GSVIVG01007708001' => 'vvi', 'GSVIVG01008587001' => 'vvi', 'GSVIVG01018849001' => 'vvi', 'GSVIVG01032432001' => 'vvi', 'HanXRQChr02g0034131' => 'han', 'HanXRQChr02g0035981' => 'han', 'HanXRQChr02g0035991' => 'han', 'HanXRQChr05g0155611' => 'han', 'HanXRQChr05g0155621' => 'han', 'HanXRQChr08g0236501' => 'han', 'HanXRQChr09g0261321' => 'han', 'HanXRQChr09g0272081' => 'han', 'HanXRQChr10g0310741' => 'han', 'HanXRQChr11g0325591' => 'han', 'HanXRQChr12g0385691' => 'han', 'HanXRQChr13g0387801' => 'han', 'HanXRQChr15g0463011' => 'han', 'Haze_03826' => 'cav', 'Haze_03827' => 'cav', 'Haze_07183' => 'cav', 'Haze_07537' => 'cav', 'Haze_07539' => 'cav', 'Haze_12461' => 'cav', 'Haze_16115' => 'cav', 'Haze_16808' => 'cav', 'Haze_18531' => 'cav', 'Hma1.2p1_0046F.1_g026700' => 'hma', 'Hma1.2p1_0046F.1_g026710' => 'hma', 'Hma1.2p1_0168F.1_g074340' => 'hma', 'Hma1.2p1_0266F.1_g107030' => 'hma', 'Hma1.2p1_0266F.1_g107060' => 'hma', 'Hma1.2p1_0275F.1_g110510' => 'hma', 'Hma1.2p1_0592F.1_g185490' => 'hma', 'Hma1.2p1_0592F.1_g185500' => 'hma', 'Hma1.2p1_0592F.1_g185510' => 'hma', 'Hma1.2p1_0592F.1_g185520' => 'hma', 'Hma1.2p1_0592F.1_g185530' => 'hma', 'Hma1.2p1_0818F.1_g223450' => 'hma', 'HPP92_009708' => 'vpl', 'HPP92_009793' => 'vpl', 'HPP92_009796' => 'vpl', 'HPP92_009797' => 'vpl', 'HPP92_014940' => 'vpl', 'HPP92_014988' => 'vpl', 'Hund02463' => 'sun', 'Hund02760' => 'sun', 'Hund05071' => 'sun', 'Hund10108' => 'sun', 'Hund11204' => 'sun', 'Hund14016' => 'sun', 'Hund16464' => 'sun', 'Lalb_Chr09g0333391' => 'lal', 'Lalb_Chr11g0070461' => 'lal', 'Lalb_Chr12g0201671' => 'lal', 'Lalb_Chr13g0297161' => 'lal', 'Lj1g0002823' => 'lja', 'Lj3C1074T6' => 'lonja', 'Lj4A212T28' => 'lonja', 'Lj4g0005516' => 'lja', 'Lj4g0013705' => 'lja', 'Lj4g0027865' => 'lja', 'Lj5C92G16' => 'lonja', 'Lj5C92T12' => 'lonja', 'Lj7C596T3' => 'lonja', 'Lj9A446G59' => 'lonja', 'Lj9A482G21' => 'lonja', 'Lsat_1_v5_gn_1_28261' => 'lsa', 'Lsat_1_v5_gn_1_28281' => 'lsa', 'Lsat_1_v5_gn_1_32721' => 'lsa', 'Lsat_1_v5_gn_4_151760' => 'lsa', 'Lsat_1_v5_gn_4_2120' => 'lsa', 'Lsat_1_v5_gn_4_75761' => 'lsa', 'Lsat_1_v5_gn_5_10920' => 'lsa', 'Manes.02G099900' => 'mes', 'Manes.11G096200' => 'mes', 'Manes.12G007200' => 'mes', 'Manes.14G048300' => 'mes', 'Manes.17G114700' => 'mes', 'Mapoly0002s0070' => 'mpo', 'Mapoly0029s0099' => 'mpo', 'MBI07_g24742_MAGBIO' => 'mbi', 'MBI10_g27988_MAGBIO' => 'mbi', 'MBI11_g13057_MAGBIO' => 'mbi', 'MD02G1137200' => 'mdo', 'MD06G1137200' => 'mdo', 'MD07G1122300' => 'mdo', 'MD09G1078200' => 'mdo', 'MD13G1123700' => 'mdo', 'MD14G1151900' => 'mdo', 'MD17G1030900' => 'mdo', 'MD17G1068200' => 'mdo', 'MD17G1068600' => 'mdo', 'Medtr3g077540' => 'mtr', 'Medtr4g105530' => 'mtr', 'Medtr8g076580' => 'mtr', 'Medtr8g076590' => 'mtr', 'Medtr8g096410' => 'mtr', 'MELO3C016411.2' => 'cme', 'MELO3C017780.2' => 'cme', 'MELO3C022560.2' => 'cme', 'MELO3C026187.2' => 'cme', 'MELO3C026286.2' => 'cme', 'MELO3C032854.2' => 'cme', 'Migut.H02495' => 'egut', 'Migut.I00561' => 'egut', 'Migut.K01015' => 'egut', 'Migut.K01016' => 'egut', 'Migut.L00743' => 'egut', 'Migut.L00744' => 'egut', 'Migut.L00746' => 'egut', 'Migut.L00798' => 'egut', 'Migut.L00799' => 'egut', 'Migut.N02096' => 'egut', 'MSTRG.11259' => 'ama', 'MSTRG.23142' => 'ama', 'MSTRG.2499' => 'ama', 'Nitab4.5_0000003g0730' => 'nta', 'Nitab4.5_0000137g0020' => 'nta', 'Nitab4.5_0000721g0210' => 'nta', 'Nitab4.5_0000723g0050' => 'nta', 'Nitab4.5_0000913g0070' => 'nta', 'Nitab4.5_0001332g0040' => 'nta', 'Nitab4.5_0001771g0050' => 'nta', 'Nitab4.5_0001918g0050' => 'nta', 'Nitab4.5_0002686g0030' => 'nta', 'Nitab4.5_0003156g0020' => 'nta', 'Nitab4.5_0003383g0040' => 'nta', 'Nitab4.5_0003918g0010' => 'nta', 'Nitab4.5_0006760g0010' => 'nta', 'Nn1g05981' => 'nnu', 'Nn1g06288' => 'nnu', 'Nn3g16371' => 'nnu', 'Nn3g16786' => 'nnu', 'Nn4g22232' => 'nnu', 'Oeu005144.1' => 'oeu', 'Oeu005145.1' => 'oeu', 'Oeu011348.1' => 'oeu', 'Oeu016415.1' => 'oeu', 'Oeu023501.1' => 'oeu', 'Oeu044473.1' => 'oeu', 'Oeu048892.2' => 'oeu', 'Os01g0549200' => 'osa', 'Os02g0469300' => 'osa', 'Os04g0311100' => 'osa', 'Os06g0474900' => 'osa', 'Os10g0181700' => 'osa', 'Os11g0454800' => 'osa', 'Peaxi162Scf00037g00714' => 'pax', 'Peaxi162Scf00084g01217' => 'pax', 'Peaxi162Scf00257g00217' => 'pax', 'Peaxi162Scf00516g00215' => 'pax', 'Peaxi162Scf00689g00123' => 'pax', 'PGR044G2719' => 'pgr', 'PGR083G1360' => 'pgr', 'PGR102G2849' => 'pgr', 'PGR119G2534' => 'pgr', 'PGSC0003DMG400003538' => 'stu', 'PGSC0003DMG400028138' => 'stu', 'PGSC0003DMG400031732' => 'stu', 'PGSC0003DMG400038165' => 'stu', 'Phvul.002G284600' => 'pvu', 'Phvul.003G258200' => 'pvu', 'Phvul.009G176500' => 'pvu', 'Potri.003G167201' => 'ptr', 'Potri.005G118400' => 'ptr', 'Potri.012G089000' => 'ptr', 'Potri.012G102800' => 'ptr', 'Potri.015G079400' => 'ptr', 'Potri.015G100900' => 'ptr', 'Pp3c14_9810' => 'ppa', 'Pp3c15_10450' => 'ppa', 'Pp3c20_19150' => 'ppa', 'Pp3c23_12740' => 'ppa', 'Pp3c23_6310' => 'ppa', 'Pp3c24_3720' => 'ppa', 'Pp3c27_2580' => 'ppa', 'Pp3c9_8990' => 'ppa', 'PRCOL_00002854' => 'pco', 'Prupe.1G221200' => 'ppe', 'Prupe.3G289000' => 'ppe', 'Prupe.5G147000' => 'ppe', 'Prupe.6G157300' => 'ppe', 'Prupe.7G163400' => 'ppe', 'Psat0s2177g0040' => 'psa', 'Psat3g174760' => 'psa', 'Psat3g192160' => 'psa', 'Psat4g058520' => 'psa', 'Psat4g096840' => 'psa', 'Psat7g037320' => 'psa', 'PSO017G1274' => 'pso', 'PSO017G5166' => 'pso', 'PSO063G4558' => 'pso', 'PSO170G4458' => 'pso', 'PSO170G5005' => 'pso', 'PSO210G6156' => 'pso', 'PSO210G6635' => 'pso', 'PSO210G7397' => 'pso', 'PSO210G7700' => 'pso', 'PSO455G0035' => 'pso', 'PSO455G0180' => 'pso', 'PSO478G4515' => 'pso', 'PSO832G1305' => 'pso', 'PSO832G3489' => 'pso', 'QL02p075247' => 'qlo', 'QL03p051148' => 'qlo', 'QL05p010313' => 'qlo', 'QL06p034627' => 'qlo', 'QL10p001889' => 'qlo', 'QL10p010846' => 'qlo', 'RcHm_v2.0_Chr1g0350621' => 'rch', 'RcHm_v2.0_Chr1g0350641' => 'rch', 'RcHm_v2.0_Chr2g0092891' => 'rch', 'RcHm_v2.0_Chr2g0100251' => 'rch', 'RcHm_v2.0_Chr2g0158661' => 'rch', 'RcHm_v2.0_Chr2g0172741' => 'rch', 'RcHm_v2.0_Chr4g0429571' => 'rch', 'RcHm_v2.0_Chr5g0042471' => 'rch', 'RcHm_v2.0_Chr7g0189451' => 'rch', 'Rhsim08G0052000' => 'rsi', 'Rhsim08G0174400' => 'rsi', 'Rhsim08G0193200' => 'rsi', 'Rhsim10G0214800' => 'rsi', 'Rhsim10G0214900' => 'rsi', 'Rhsim10G0215000' => 'rsi', 'Rhsim12G0022900' => 'rsi', 'Rhsim12G0177500' => 'rsi', 'Rhsim12G0177700' => 'rsi', 'Sabra03G0122600' => 'sbr', 'Sabra05G0097400' => 'sbr', 'Sabra12G0064100' => 'sbr', 'Sabra15G0121300' => 'sbr', 'SalBow2G0642' => 'sbo', 'SalBow5G2667' => 'sbo', 'SalBow5G4873' => 'sbo', 'SalBow8G2395' => 'sbo', 'Sc03g0003290' => 'sci', 'Sc10g0010130' => 'sci', 'Sc22g0003650' => 'sci', 'Sed0001603' => 'sed', 'Sed0004259' => 'sed', 'Sed0006789' => 'sed', 'Sed0011838' => 'sed', 'Sed0012964' => 'sed', 'Sed0016383' => 'sed', 'Sed0019010' => 'sed', 'Sed0020188' => 'sed', 'SEGI_04702' => 'sgi', 'SEGI_17231' => 'sgi', 'SEGI_18877' => 'sgi', 'SEGI_25196' => 'sgi', 'SEGI_25515' => 'sgi', 'SEGI_28445' => 'sgi', 'SEGI_37452' => 'sgi', 'SGA_v2.0_scaffold188G40336' => 'sas', 'SGA_v2.0_scaffold228G43247' => 'sas', 'SGA_v2.0_scaffold280G46853' => 'sas', 'SGA_v2.0_scaffold34G13808' => 'sas', 'SGA_v2.0_scaffold40G15576' => 'sas', 'SGA_v2.0_scaffold611G53188' => 'sas', 'SGA_v2.0_scaffold78G25461' => 'sas', 'SGA_v2.0_scaffold90G27888' => 'sas', 'SHI08601' => 'shi', 'SHI08606' => 'shi', 'SHI17117' => 'shi', 'SHI17119' => 'shi', 'SMO118G0201' => 'smo', 'SMO169G0247' => 'smo', 'SMO176G0006' => 'smo', 'SMO176G0015' => 'smo', 'SMO202G0006' => 'smo', 'SMO240G0050' => 'smo', 'SMO286G0009' => 'smo', 'SMO338G0033' => 'smo', 'SMO356G0533' => 'smo', 'SMO364G0382' => 'smo', 'SMO367G0166' => 'smo', 'SMO367G1098' => 'smo', 'Solyc01g009920.3' => 'sly', 'Solyc01g099300.3' => 'sly', 'Solyc02g084700.3' => 'sly', 'Solyc03g097520.3' => 'sly', 'Solyc06g071580.3' => 'sly', 'Solyc10g081760.3' => 'sly', 'Sopen01g005480' => 'spe', 'Sopen01g042850' => 'spe', 'Sopen02g029370' => 'spe', 'Sopen03g028280' => 'spe', 'Sopen06g027870' => 'spe', 'Sopen10g032270' => 'spe', 'Sp5g18180' => 'spa', 'Sp6g12880' => 'spa', 'Sp6g30850' => 'spa', 'Sp7g22960' => 'spa', 'Sp7g34010' => 'spa', 'SpUn1326_0010' => 'spa', 'TAR371G0242' => 'tar', 'TAR622G0638' => 'tar', 'TAR628G1548' => 'tar', 'TAR629G1079' => 'tar', 'TAR629G3413' => 'tar', 'THA.LOC104804249' => 'tha', 'THA.LOC104808315' => 'tha', 'THA.LOC104809238' => 'tha', 'THA.LOC104825484' => 'tha', 'Thecc.01G025500' => 'tca', 'Thecc.03G015800' => 'tca', 'Thecc.03G018000' => 'tca', 'Thecc.03G134800' => 'tca', 'Thecc.04G014700' => 'tca', 'Thhalv10006991m.g' => 'esa', 'Thhalv10012707m.g' => 'esa', 'Thhalv10015739m.g' => 'esa', 'Thhalv10024553m.g' => 'esa', 'Thhalv10024673m.g' => 'esa', 'Thhalv10029187m.g' => 'esa', 'TPR.G12971' => 'tpr', 'TPR.G29396' => 'tpr', 'TPR.G33376' => 'tpr', 'TPR.G35508' => 'tpr', 'TPR.G35516' => 'tpr', 'TPR.G37317' => 'tpr', 'TPR.G37389' => 'tpr', 'TPR.G37523' => 'tpr', 'TPR.G559' => 'tpr', 'TWI14G0070' => 'twi', 'TWI14G0729' => 'twi', 'TWI18G0596' => 'twi', 'TWI39G0780' => 'twi', 'TWI39G0850' => 'twi', 'TWI73G1052' => 'twi', 'unitig_52.g17485' => 'ugi', 'unitig_61.g26355' => 'ugi', 'vmacro01040' => 'vma', 'vmacro16731' => 'vma', 'vmacro18270' => 'vma', 'vmacro19142' => 'vma', 'vmacro19407' => 'vma', 'vmacro19408' => 'vma', 'vmacro21899' => 'vma', 'vmacro21900' => 'vma', 'vmacro21901' => 'vma', 'VMungo0251G0490' => 'vmu', 'VMungo0251G1748' => 'vmu', 'VMungo1309G0421' => 'vmu', 'Zm00001eb086500' => 'zma', 'Zm00001eb150680' => 'zma', 'Zm00001eb162330' => 'zma', 'Zm00001eb203130' => 'zma', 'Zm00001eb369480' => 'zma', 'Zm00001eb382340' => 'zma', 'Zm00001eb416360' => 'zma' ), 'gf_id' => 'HOM05D000902', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000902' ), 'data_identifier' => 'HOM05D000902', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000902', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '663', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02470' => 'bna', 'A01p16260' => 'bna', 'A02p01680' => 'bna', 'A03p16600' => 'bna', 'A03p55660' => 'bna', 'A03p64160' => 'bna', 'A03p64170' => 'bna', 'A08p31900' => 'bna', 'A09p59530' => 'bna', 'A10p08230' => 'bna', 'A10p25090' => 'bna', 'Aa31LG3G7100' => 'aar', 'Aa31LG3G7110' => 'aar', 'Aa31LG6G13160' => 'aar', 'Aa31LG7G10770' => 'aar', 'Aa31LG7G3830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2723' => 'aag', 'Actinidia08045' => 'ach', 'Actinidia08888' => 'ach', 'Actinidia18333' => 'ach', 'Actinidia19334' => 'ach', 'Actinidia25552' => 'ach', 'Actinidia26089' => 'ach', 'Actinidia30615' => 'ach', 'Actinidia30616' => 'ach', 'Actinidia33083' => 'ach', 'Actinidia35762' => 'ach', 'Ah.02g110620' => 'amhyb', 'Ah.11g046390' => 'amhyb', 'AL1G31670' => 'aly', 'AL6G23730' => 'aly', 'AL7G14740' => 'aly', 'AL7G14750' => 'aly', 'AL7G14760' => 'aly', 'AL7G28220' => 'aly', 'AL8G24940' => 'aly', 'Aqoxy3G01665' => 'aox', 'Aqoxy3G02853' => 'aox', 'Aqoxy5G01513' => 'aox', 'Aqoxy5G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8SKA4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ75LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKDA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0LJZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7REX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZP4YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWX7I5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2QKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS0L9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPCD8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q161UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC7XCF' => 'arhy', 'AT1G19100' => 'ath', 'AT4G24970' => 'ath', 'AT4G36270' => 'ath', 'AT4G36280' => 'ath', 'AT4G36290' => 'ath', 'AT5G13130' => 'ath', 'AT5G50780' => 'ath', 'ATR0582G266' => 'atr', 'ATR0661G195' => 'atr', 'ATR1152G031' => 'atr', 'Atru.chr11.2382' => 'acertr', 'Atru.chr12.2337' => 'acertr', 'Atru.chr3.744' => 'acertr', 'Atru.chr6.1870' => 'acertr', 'Atru.chr9.2515' => 'acertr', 'AUR62004120' => 'cqu', 'AUR62005667' => 'cqu', 'AUR62007634' => 'cqu', 'AUR62008186' => 'cqu', 'AUR62008187' => 'cqu', 'AUR62008188' => 'cqu', 'AUR62027954' => 'cqu', 'AUR62028766' => 'cqu', 'AUR62028767' => 'cqu', 'AUR62028768' => 'cqu', 'AUR62028886' => 'cqu', 'AUR62029563' => 'cqu', 'AUR62038832' => 'cqu', 'BcaB01g04149' => 'bca', 'BcaB03g12940' => 'bca', 'BcaB03g13090' => 'bca', 'BcaB03g14466' => 'bca', 'BcaB05g24035' => 'bca', 'BcaC01g06050' => 'bca', 'BcaC04g19148' => 'bca', 'BcaC04g20761' => 'bca', 'BcaC06g32845' => 'bca', 'BcaC07g41274' => 'bca', 'BcaC09g50827' => 'bca', 'BcaNung00741' => 'bca', 'BcaNung00742' => 'bca', 'BcaNung01859' => 'bca', 'BcaNung03985' => 'bca', 'BcaNung03989' => 'bca', 'BcaNung05661' => 'bca', 'BolC1t00257H' => 'bol', 'BolC1t01956H' => 'bol', 'BolC2t06534H' => 'bol', 'BolC3t14334H' => 'bol', 'BolC5t30451H' => 'bol', 'BolC7t45880H' => 'bol', 'BolC7t46586H' => 'bol', 'BolC8t49301H' => 'bol', 'BolC8t51837H' => 'bol', 'BolC9t56822H' => 'bol', 'BolC9t59235H' => 'bol', 'BraA01t00234Z' => 'bra', 'BraA01t01563Z' => 'bra', 'BraA02t05147Z' => 'bra', 'BraA03t10947Z' => 'bra', 'BraA03t14633Z' => 'bra', 'BraA08t35112Z' => 'bra', 'BraA09t41330Z' => 'bra', 'BraA10t44570Z' => 'bra', 'C01p02670' => 'bna', 'C01p20260' => 'bna', 'C02p05890' => 'bna', 'C03p19530' => 'bna', 'C05p17470' => 'bna', 'C07p53900' => 'bna', 'C07p61630' => 'bna', 'C08p16800' => 'bna', 'C08p42810' => 'bna', 'C09p39480' => 'bna', 'C09p63980' => 'bna', 'CAN.G1001.7' => 'can', 'CAN.G1034.55' => 'can', 'CAN.G143.7' => 'can', 'CAN.G3340.1' => 'can', 'CAN.G358.19' => 'can', 'CAN.G373.2' => 'can', 'CAN.G674.16' => 'can', 'CAN.G674.17' => 'can', 'CAN.G674.18' => 'can', 'CAN.G732.2' => 'can', 'CAN.G732.3' => 'can', 'CAN.G993.39' => 'can', 'CANSAT01G2052' => 'cansat', 'CANSAT80G0070' => 'cansat', 'CANSAT80G0483' => 'cansat', 'CANSAT80G0625' => 'cansat', 'CARHR019690' => 'chi', 'CARHR080280' => 'chi', 'CARHR152750' => 'chi', 'CARHR152760' => 'chi', 'CARHR152770' => 'chi', 'CARHR200340' => 'chi', 'CARHR232370' => 'chi', 'CARHR244670' => 'chi', 'CARHR244680' => 'chi', 'CARHR257520' => 'chi', 'Carub.0001s1872' => 'cru', 'Carub.0006s1130' => 'cru', 'Carub.0007s0396' => 'cru', 'Carub.0007s0397' => 'cru', 'Carub.0007s1608' => 'cru', 'Carub.0008s1068' => 'cru', 'Carub.0008s1077' => 'cru', 'Ca_16158_v3' => 'car', 'Ca_17571_v3' => 'car', 'Ca_21936_v3' => 'car', 'Ca_22350_v3' => 'car', 'CBR_g22445' => 'cbr', 'CBR_g26290' => 'cbr', 'Cc04_g09610' => 'ccan', 'Cc04_g12280' => 'ccan', 'Cc07_g10230' => 'ccan', 'CDE02G0093' => 'cde', 'CDE02G0701' => 'cde', 'CDE04G1050' => 'cde', 'CDE05G1833' => 'cde', 'CDE05G3058' => 'cde', 'CDE05G3380' => 'cde', 'CDE06G0536' => 'cde', 'Cfa006923' => 'cfa', 'Cfa009402' => 'cfa', 'Cfa018751' => 'cfa', 'Cfa019164' => 'cfa', 'Cfa022935' => 'cfa', 'Ciclev10019081m.g' => 'ccl', 'Ciclev10025076m.g' => 'ccl', 'Ciclev10030712m.g' => 'ccl', 'Ciclev10033760m.g' => 'ccl', 'CiPaw.05G105600' => 'cil', 'CiPaw.08G136700' => 'cil', 'CiPaw.11G003900' => 'cil', 'CiPaw.11G023700' => 'cil', 'CiPaw.12G003700' => 'cil', 'ClCG06G017100' => 'cla', 'ClCG06G018110' => 'cla', 'ClCG07G008800' => 'cla', 'ClCG07G015330' => 'cla', 'COL.COLO4_13698' => 'col', 'COL.COLO4_16659' => 'col', 'COL.COLO4_21986' => 'col', 'COL.COLO4_24049' => 'col', 'COL.COLO4_29061' => 'col', 'COL.COLO4_29075' => 'col', 'COL.COLO4_30094' => 'col', 'Cpa.g.c33689' => 'cpa', 'Cpa.g.sc108.39' => 'cpa', 'Cpa.g.sc108.41' => 'cpa', 'Cpa.g.sc1163.1' => 'cpa', 'Cpa.g.sc4.155' => 'cpa', 'Cpa.g.sc6.194' => 'cpa', 'CsaV3_1G000340' => 'csa', 'CsaV3_1G001400' => 'csa', 'CsaV3_4G002220' => 'csa', 'CsaV3_4G005370' => 'csa', 'CSS0007487' => 'camsi', 'CSS0008066' => 'camsi', 'CSS0009120' => 'camsi', 'CSS0015512' => 'camsi', 'CSS0022409' => 'camsi', 'CSS0025358' => 'camsi', 'CSS0044547' => 'camsi', 'DCAR_013057' => 'dca', 'DCAR_015058' => 'dca', 'DCAR_016027' => 'dca', 'DCAR_017327' => 'dca', 'DCAR_020743' => 'dca', 'DCAR_026157' => 'dca', 'DCAR_032339' => 'dca', 'DCAR_032340' => 'dca', 'Dinv11200' => 'din', 'Dinv11201' => 'din', 'Dinv20631' => 'din', 'Dinv23182' => 'din', 'Dinv33466' => 'din', 'Dinv33583' => 'din', 'Dinv38565' => 'din', 'Duzib068G0200' => 'dzi', 'Duzib147G0132' => 'dzi', 'Duzib147G0635' => 'dzi', 'Duzib205G1670' => 'dzi', 'Duzib251G0606' => 'dzi', 'ECA232G3336' => 'eca', 'ECA232G3763' => 'eca', 'ECA232G4845' => 'eca', 'ECA234G1607' => 'eca', 'ECA246G0932' => 'eca', 'ECA247G0781' => 'eca', 'ECA247G1932' => 'eca', 'ECA247G2079' => 'eca', 'ECA247G3338' => 'eca', 'ECA247G4115' => 'eca', 'EL10Ac3g06552' => 'bvu', 'EL10Ac5g10721' => 'bvu', 'EL10Ac5g10722' => 'bvu', 'EL10Ac5g10723' => 'bvu', 'EL10Ac5g11361' => 'bvu', 'EL10Ac6g13553' => 'bvu', 'EL10As8g23872' => 'bvu', 'Eucgr.B00250' => 'egr', 'Eucgr.B00251' => 'egr', 'Eucgr.B03533' => 'egr', 'Eucgr.I02381' => 'egr', 'Eucgr.K02700' => 'egr', 'FAN02G0174' => 'fan', 'FAN02G3146' => 'fan', 'FAN04G1672' => 'fan', 'FAN04G2273' => 'fan', 'FAN05G2791' => 'fan', 'FAN05G4035' => 'fan', 'FAN07G0834' => 'fan', 'FAN08G1198' => 'fan', 'FAN09G4182' => 'fan', 'FAN12G0496' => 'fan', 'FAN13G1027' => 'fan', 'FAN13G2951' => 'fan', 'FAN14G0705' => 'fan', 'FAN14G0720' => 'fan', 'FAN17G0201' => 'fan', 'FAN17G2665' => 'fan', 'FAN18G1456' => 'fan', 'FAN18G1525' => 'fan', 'FAN18G3500' => 'fan', 'FAN28G2670' => 'fan', 'FvH4_1g12391' => 'fve', 'FvH4_4g23220' => 'fve', 'FvH4_5g08810' => 'fve', 'FvH4_5g28960' => 'fve', 'FvH4_6g42820' => 'fve', 'FvH4_6g51110' => 'fve', 'Glyma.02G051802' => 'gma', 'Glyma.04G185300' => 'gma', 'Glyma.05G202900' => 'gma', 'Glyma.08G010300' => 'gma', 'Glyma.16G131900' => 'gma', 'Glyma.17G087900' => 'gma', 'Gohir.A07G048600' => 'ghi', 'Gohir.A11G179000' => 'ghi', 'Gohir.A12G140900' => 'ghi', 'Gohir.A12G140950' => 'ghi', 'Gohir.A12G191700' => 'ghi', 'Gohir.A13G086300' => 'ghi', 'Gohir.D07G052900' => 'ghi', 'Gohir.D11G186600' => 'ghi', 'Gohir.D12G145575' => 'ghi', 'Gohir.D12G145650' => 'ghi', 'Gohir.D12G145725' => 'ghi', 'Gohir.D12G194050' => 'ghi', 'Gohir.D13G091800' => 'ghi', 'Gorai.001G055900' => 'gra', 'Gorai.007G198400' => 'gra', 'Gorai.008G157000' => 'gra', 'Gorai.008G157100' => 'gra', 'Gorai.008G208700' => 'gra', 'Gorai.010G138700' => 'gra', 'GSVIVG01000977001' => 'vvi', 'GSVIVG01007708001' => 'vvi', 'GSVIVG01008587001' => 'vvi', 'GSVIVG01018849001' => 'vvi', 'GSVIVG01032432001' => 'vvi', 'HanXRQChr02g0034131' => 'han', 'HanXRQChr02g0035981' => 'han', 'HanXRQChr02g0035991' => 'han', 'HanXRQChr05g0155611' => 'han', 'HanXRQChr05g0155621' => 'han', 'HanXRQChr08g0236501' => 'han', 'HanXRQChr09g0261321' => 'han', 'HanXRQChr09g0272081' => 'han', 'HanXRQChr10g0310741' => 'han', 'HanXRQChr11g0325591' => 'han', 'HanXRQChr12g0385691' => 'han', 'HanXRQChr13g0387801' => 'han', 'HanXRQChr15g0463011' => 'han', 'Haze_03826' => 'cav', 'Haze_03827' => 'cav', 'Haze_07183' => 'cav', 'Haze_07537' => 'cav', 'Haze_07539' => 'cav', 'Haze_12461' => 'cav', 'Haze_16115' => 'cav', 'Haze_16808' => 'cav', 'Haze_18531' => 'cav', 'Hma1.2p1_0046F.1_g026700' => 'hma', 'Hma1.2p1_0046F.1_g026710' => 'hma', 'Hma1.2p1_0168F.1_g074340' => 'hma', 'Hma1.2p1_0266F.1_g107030' => 'hma', 'Hma1.2p1_0266F.1_g107060' => 'hma', 'Hma1.2p1_0275F.1_g110510' => 'hma', 'Hma1.2p1_0592F.1_g185490' => 'hma', 'Hma1.2p1_0592F.1_g185500' => 'hma', 'Hma1.2p1_0592F.1_g185510' => 'hma', 'Hma1.2p1_0592F.1_g185520' => 'hma', 'Hma1.2p1_0592F.1_g185530' => 'hma', 'Hma1.2p1_0818F.1_g223450' => 'hma', 'HPP92_009708' => 'vpl', 'HPP92_009793' => 'vpl', 'HPP92_009796' => 'vpl', 'HPP92_009797' => 'vpl', 'HPP92_014940' => 'vpl', 'HPP92_014988' => 'vpl', 'Hund02463' => 'sun', 'Hund02760' => 'sun', 'Hund05071' => 'sun', 'Hund10108' => 'sun', 'Hund11204' => 'sun', 'Hund14016' => 'sun', 'Hund16464' => 'sun', 'Lalb_Chr09g0333391' => 'lal', 'Lalb_Chr11g0070461' => 'lal', 'Lalb_Chr12g0201671' => 'lal', 'Lalb_Chr13g0297161' => 'lal', 'Lj1g0002823' => 'lja', 'Lj3C1074T6' => 'lonja', 'Lj4A212T28' => 'lonja', 'Lj4g0005516' => 'lja', 'Lj4g0013705' => 'lja', 'Lj4g0027865' => 'lja', 'Lj5C92G16' => 'lonja', 'Lj5C92T12' => 'lonja', 'Lj7C596T3' => 'lonja', 'Lj9A446G59' => 'lonja', 'Lj9A482G21' => 'lonja', 'Lsat_1_v5_gn_1_28261' => 'lsa', 'Lsat_1_v5_gn_1_28281' => 'lsa', 'Lsat_1_v5_gn_1_32721' => 'lsa', 'Lsat_1_v5_gn_4_151760' => 'lsa', 'Lsat_1_v5_gn_4_2120' => 'lsa', 'Lsat_1_v5_gn_4_75761' => 'lsa', 'Lsat_1_v5_gn_5_10920' => 'lsa', 'Manes.02G099900' => 'mes', 'Manes.11G096200' => 'mes', 'Manes.12G007200' => 'mes', 'Manes.14G048300' => 'mes', 'Manes.17G114700' => 'mes', 'Mapoly0002s0070' => 'mpo', 'Mapoly0029s0099' => 'mpo', 'MBI07_g24742_MAGBIO' => 'mbi', 'MBI10_g27988_MAGBIO' => 'mbi', 'MBI11_g13057_MAGBIO' => 'mbi', 'MD02G1137200' => 'mdo', 'MD06G1137200' => 'mdo', 'MD07G1122300' => 'mdo', 'MD09G1078200' => 'mdo', 'MD13G1123700' => 'mdo', 'MD14G1151900' => 'mdo', 'MD17G1030900' => 'mdo', 'MD17G1068200' => 'mdo', 'MD17G1068600' => 'mdo', 'Medtr3g077540' => 'mtr', 'Medtr4g105530' => 'mtr', 'Medtr8g076580' => 'mtr', 'Medtr8g076590' => 'mtr', 'Medtr8g096410' => 'mtr', 'MELO3C016411.2' => 'cme', 'MELO3C017780.2' => 'cme', 'MELO3C022560.2' => 'cme', 'MELO3C026187.2' => 'cme', 'MELO3C026286.2' => 'cme', 'MELO3C032854.2' => 'cme', 'Migut.H02495' => 'egut', 'Migut.I00561' => 'egut', 'Migut.K01015' => 'egut', 'Migut.K01016' => 'egut', 'Migut.L00743' => 'egut', 'Migut.L00744' => 'egut', 'Migut.L00746' => 'egut', 'Migut.L00798' => 'egut', 'Migut.L00799' => 'egut', 'Migut.N02096' => 'egut', 'MSTRG.11259' => 'ama', 'MSTRG.23142' => 'ama', 'MSTRG.2499' => 'ama', 'Nitab4.5_0000003g0730' => 'nta', 'Nitab4.5_0000137g0020' => 'nta', 'Nitab4.5_0000721g0210' => 'nta', 'Nitab4.5_0000723g0050' => 'nta', 'Nitab4.5_0000913g0070' => 'nta', 'Nitab4.5_0001332g0040' => 'nta', 'Nitab4.5_0001771g0050' => 'nta', 'Nitab4.5_0001918g0050' => 'nta', 'Nitab4.5_0002686g0030' => 'nta', 'Nitab4.5_0003156g0020' => 'nta', 'Nitab4.5_0003383g0040' => 'nta', 'Nitab4.5_0003918g0010' => 'nta', 'Nitab4.5_0006760g0010' => 'nta', 'Nn1g05981' => 'nnu', 'Nn1g06288' => 'nnu', 'Nn3g16371' => 'nnu', 'Nn3g16786' => 'nnu', 'Nn4g22232' => 'nnu', 'Oeu005144.1' => 'oeu', 'Oeu005145.1' => 'oeu', 'Oeu011348.1' => 'oeu', 'Oeu016415.1' => 'oeu', 'Oeu023501.1' => 'oeu', 'Oeu044473.1' => 'oeu', 'Oeu048892.2' => 'oeu', 'Os01g0549200' => 'osa', 'Os02g0469300' => 'osa', 'Os04g0311100' => 'osa', 'Os06g0474900' => 'osa', 'Os10g0181700' => 'osa', 'Os11g0454800' => 'osa', 'Peaxi162Scf00037g00714' => 'pax', 'Peaxi162Scf00084g01217' => 'pax', 'Peaxi162Scf00257g00217' => 'pax', 'Peaxi162Scf00516g00215' => 'pax', 'Peaxi162Scf00689g00123' => 'pax', 'PGR044G2719' => 'pgr', 'PGR083G1360' => 'pgr', 'PGR102G2849' => 'pgr', 'PGR119G2534' => 'pgr', 'PGSC0003DMG400003538' => 'stu', 'PGSC0003DMG400028138' => 'stu', 'PGSC0003DMG400031732' => 'stu', 'PGSC0003DMG400038165' => 'stu', 'Phvul.002G284600' => 'pvu', 'Phvul.003G258200' => 'pvu', 'Phvul.009G176500' => 'pvu', 'Potri.003G167201' => 'ptr', 'Potri.005G118400' => 'ptr', 'Potri.012G089000' => 'ptr', 'Potri.012G102800' => 'ptr', 'Potri.015G079400' => 'ptr', 'Potri.015G100900' => 'ptr', 'Pp3c14_9810' => 'ppa', 'Pp3c15_10450' => 'ppa', 'Pp3c20_19150' => 'ppa', 'Pp3c23_12740' => 'ppa', 'Pp3c23_6310' => 'ppa', 'Pp3c24_3720' => 'ppa', 'Pp3c27_2580' => 'ppa', 'Pp3c9_8990' => 'ppa', 'PRCOL_00002854' => 'pco', 'Prupe.1G221200' => 'ppe', 'Prupe.3G289000' => 'ppe', 'Prupe.5G147000' => 'ppe', 'Prupe.6G157300' => 'ppe', 'Prupe.7G163400' => 'ppe', 'Psat0s2177g0040' => 'psa', 'Psat3g174760' => 'psa', 'Psat3g192160' => 'psa', 'Psat4g058520' => 'psa', 'Psat4g096840' => 'psa', 'Psat7g037320' => 'psa', 'PSO017G1274' => 'pso', 'PSO017G5166' => 'pso', 'PSO063G4558' => 'pso', 'PSO170G4458' => 'pso', 'PSO170G5005' => 'pso', 'PSO210G6156' => 'pso', 'PSO210G6635' => 'pso', 'PSO210G7397' => 'pso', 'PSO210G7700' => 'pso', 'PSO455G0035' => 'pso', 'PSO455G0180' => 'pso', 'PSO478G4515' => 'pso', 'PSO832G1305' => 'pso', 'PSO832G3489' => 'pso', 'QL02p075247' => 'qlo', 'QL03p051148' => 'qlo', 'QL05p010313' => 'qlo', 'QL06p034627' => 'qlo', 'QL10p001889' => 'qlo', 'QL10p010846' => 'qlo', 'RcHm_v2.0_Chr1g0350621' => 'rch', 'RcHm_v2.0_Chr1g0350641' => 'rch', 'RcHm_v2.0_Chr2g0092891' => 'rch', 'RcHm_v2.0_Chr2g0100251' => 'rch', 'RcHm_v2.0_Chr2g0158661' => 'rch', 'RcHm_v2.0_Chr2g0172741' => 'rch', 'RcHm_v2.0_Chr4g0429571' => 'rch', 'RcHm_v2.0_Chr5g0042471' => 'rch', 'RcHm_v2.0_Chr7g0189451' => 'rch', 'Rhsim08G0052000' => 'rsi', 'Rhsim08G0174400' => 'rsi', 'Rhsim08G0193200' => 'rsi', 'Rhsim10G0214800' => 'rsi', 'Rhsim10G0214900' => 'rsi', 'Rhsim10G0215000' => 'rsi', 'Rhsim12G0022900' => 'rsi', 'Rhsim12G0177500' => 'rsi', 'Rhsim12G0177700' => 'rsi', 'Sabra03G0122600' => 'sbr', 'Sabra05G0097400' => 'sbr', 'Sabra12G0064100' => 'sbr', 'Sabra15G0121300' => 'sbr', 'SalBow2G0642' => 'sbo', 'SalBow5G2667' => 'sbo', 'SalBow5G4873' => 'sbo', 'SalBow8G2395' => 'sbo', 'Sc03g0003290' => 'sci', 'Sc10g0010130' => 'sci', 'Sc22g0003650' => 'sci', 'Sed0001603' => 'sed', 'Sed0004259' => 'sed', 'Sed0006789' => 'sed', 'Sed0011838' => 'sed', 'Sed0012964' => 'sed', 'Sed0016383' => 'sed', 'Sed0019010' => 'sed', 'Sed0020188' => 'sed', 'SEGI_04702' => 'sgi', 'SEGI_17231' => 'sgi', 'SEGI_18877' => 'sgi', 'SEGI_25196' => 'sgi', 'SEGI_25515' => 'sgi', 'SEGI_28445' => 'sgi', 'SEGI_37452' => 'sgi', 'SGA_v2.0_scaffold188G40336' => 'sas', 'SGA_v2.0_scaffold228G43247' => 'sas', 'SGA_v2.0_scaffold280G46853' => 'sas', 'SGA_v2.0_scaffold34G13808' => 'sas', 'SGA_v2.0_scaffold40G15576' => 'sas', 'SGA_v2.0_scaffold611G53188' => 'sas', 'SGA_v2.0_scaffold78G25461' => 'sas', 'SGA_v2.0_scaffold90G27888' => 'sas', 'SHI08601' => 'shi', 'SHI08606' => 'shi', 'SHI17117' => 'shi', 'SHI17119' => 'shi', 'SMO118G0201' => 'smo', 'SMO169G0247' => 'smo', 'SMO176G0006' => 'smo', 'SMO176G0015' => 'smo', 'SMO202G0006' => 'smo', 'SMO240G0050' => 'smo', 'SMO286G0009' => 'smo', 'SMO338G0033' => 'smo', 'SMO356G0533' => 'smo', 'SMO364G0382' => 'smo', 'SMO367G0166' => 'smo', 'SMO367G1098' => 'smo', 'Solyc01g009920.3' => 'sly', 'Solyc01g099300.3' => 'sly', 'Solyc02g084700.3' => 'sly', 'Solyc03g097520.3' => 'sly', 'Solyc06g071580.3' => 'sly', 'Solyc10g081760.3' => 'sly', 'Sopen01g005480' => 'spe', 'Sopen01g042850' => 'spe', 'Sopen02g029370' => 'spe', 'Sopen03g028280' => 'spe', 'Sopen06g027870' => 'spe', 'Sopen10g032270' => 'spe', 'Sp5g18180' => 'spa', 'Sp6g12880' => 'spa', 'Sp6g30850' => 'spa', 'Sp7g22960' => 'spa', 'Sp7g34010' => 'spa', 'SpUn1326_0010' => 'spa', 'TAR371G0242' => 'tar', 'TAR622G0638' => 'tar', 'TAR628G1548' => 'tar', 'TAR629G1079' => 'tar', 'TAR629G3413' => 'tar', 'THA.LOC104804249' => 'tha', 'THA.LOC104808315' => 'tha', 'THA.LOC104809238' => 'tha', 'THA.LOC104825484' => 'tha', 'Thecc.01G025500' => 'tca', 'Thecc.03G015800' => 'tca', 'Thecc.03G018000' => 'tca', 'Thecc.03G134800' => 'tca', 'Thecc.04G014700' => 'tca', 'Thhalv10006991m.g' => 'esa', 'Thhalv10012707m.g' => 'esa', 'Thhalv10015739m.g' => 'esa', 'Thhalv10024553m.g' => 'esa', 'Thhalv10024673m.g' => 'esa', 'Thhalv10029187m.g' => 'esa', 'TPR.G12971' => 'tpr', 'TPR.G29396' => 'tpr', 'TPR.G33376' => 'tpr', 'TPR.G35508' => 'tpr', 'TPR.G35516' => 'tpr', 'TPR.G37317' => 'tpr', 'TPR.G37389' => 'tpr', 'TPR.G37523' => 'tpr', 'TPR.G559' => 'tpr', 'TWI14G0070' => 'twi', 'TWI14G0729' => 'twi', 'TWI18G0596' => 'twi', 'TWI39G0780' => 'twi', 'TWI39G0850' => 'twi', 'TWI73G1052' => 'twi', 'unitig_52.g17485' => 'ugi', 'unitig_61.g26355' => 'ugi', 'vmacro01040' => 'vma', 'vmacro16731' => 'vma', 'vmacro18270' => 'vma', 'vmacro19142' => 'vma', 'vmacro19407' => 'vma', 'vmacro19408' => 'vma', 'vmacro21899' => 'vma', 'vmacro21900' => 'vma', 'vmacro21901' => 'vma', 'VMungo0251G0490' => 'vmu', 'VMungo0251G1748' => 'vmu', 'VMungo1309G0421' => 'vmu', 'Zm00001eb086500' => 'zma', 'Zm00001eb150680' => 'zma', 'Zm00001eb162330' => 'zma', 'Zm00001eb203130' => 'zma', 'Zm00001eb369480' => 'zma', 'Zm00001eb382340' => 'zma', 'Zm00001eb416360' => 'zma' ) $gf_id = 'HOM05D000902' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000902' ) $data_identifier = 'HOM05D000902' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 13, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 10, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 6, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 9, 'hma' => (int) 12, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 4, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 6, 'ppa' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 6, 'rch' => (int) 9, 'rsi' => (int) 9, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 12, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 3, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416360' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000902', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '663', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02470' => 'bna', 'A01p16260' => 'bna', 'A02p01680' => 'bna', 'A03p16600' => 'bna', 'A03p55660' => 'bna', 'A03p64160' => 'bna', 'A03p64170' => 'bna', 'A08p31900' => 'bna', 'A09p59530' => 'bna', 'A10p08230' => 'bna', 'A10p25090' => 'bna', 'Aa31LG3G7100' => 'aar', 'Aa31LG3G7110' => 'aar', 'Aa31LG6G13160' => 'aar', 'Aa31LG7G10770' => 'aar', 'Aa31LG7G3830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2723' => 'aag', 'Actinidia08045' => 'ach', 'Actinidia08888' => 'ach', 'Actinidia18333' => 'ach', 'Actinidia19334' => 'ach', 'Actinidia25552' => 'ach', 'Actinidia26089' => 'ach', 'Actinidia30615' => 'ach', 'Actinidia30616' => 'ach', 'Actinidia33083' => 'ach', 'Actinidia35762' => 'ach', 'Ah.02g110620' => 'amhyb', 'Ah.11g046390' => 'amhyb', 'AL1G31670' => 'aly', 'AL6G23730' => 'aly', 'AL7G14740' => 'aly', 'AL7G14750' => 'aly', 'AL7G14760' => 'aly', 'AL7G28220' => 'aly', 'AL8G24940' => 'aly', 'Aqoxy3G01665' => 'aox', 'Aqoxy3G02853' => 'aox', 'Aqoxy5G01513' => 'aox', 'Aqoxy5G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8SKA4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ75LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKDA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0LJZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7REX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZP4YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWX7I5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2QKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS0L9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPCD8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q161UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC7XCF' => 'arhy', 'AT1G19100' => 'ath', 'AT4G24970' => 'ath', 'AT4G36270' => 'ath', 'AT4G36280' => 'ath', 'AT4G36290' => 'ath', 'AT5G13130' => 'ath', 'AT5G50780' => 'ath', 'ATR0582G266' => 'atr', 'ATR0661G195' => 'atr', 'ATR1152G031' => 'atr', 'Atru.chr11.2382' => 'acertr', 'Atru.chr12.2337' => 'acertr', 'Atru.chr3.744' => 'acertr', 'Atru.chr6.1870' => 'acertr', 'Atru.chr9.2515' => 'acertr', 'AUR62004120' => 'cqu', 'AUR62005667' => 'cqu', 'AUR62007634' => 'cqu', 'AUR62008186' => 'cqu', 'AUR62008187' => 'cqu', 'AUR62008188' => 'cqu', 'AUR62027954' => 'cqu', 'AUR62028766' => 'cqu', 'AUR62028767' => 'cqu', 'AUR62028768' => 'cqu', 'AUR62028886' => 'cqu', 'AUR62029563' => 'cqu', 'AUR62038832' => 'cqu', 'BcaB01g04149' => 'bca', 'BcaB03g12940' => 'bca', 'BcaB03g13090' => 'bca', 'BcaB03g14466' => 'bca', 'BcaB05g24035' => 'bca', 'BcaC01g06050' => 'bca', 'BcaC04g19148' => 'bca', 'BcaC04g20761' => 'bca', 'BcaC06g32845' => 'bca', 'BcaC07g41274' => 'bca', 'BcaC09g50827' => 'bca', 'BcaNung00741' => 'bca', 'BcaNung00742' => 'bca', 'BcaNung01859' => 'bca', 'BcaNung03985' => 'bca', 'BcaNung03989' => 'bca', 'BcaNung05661' => 'bca', 'BolC1t00257H' => 'bol', 'BolC1t01956H' => 'bol', 'BolC2t06534H' => 'bol', 'BolC3t14334H' => 'bol', 'BolC5t30451H' => 'bol', 'BolC7t45880H' => 'bol', 'BolC7t46586H' => 'bol', 'BolC8t49301H' => 'bol', 'BolC8t51837H' => 'bol', 'BolC9t56822H' => 'bol', 'BolC9t59235H' => 'bol', 'BraA01t00234Z' => 'bra', 'BraA01t01563Z' => 'bra', 'BraA02t05147Z' => 'bra', 'BraA03t10947Z' => 'bra', 'BraA03t14633Z' => 'bra', 'BraA08t35112Z' => 'bra', 'BraA09t41330Z' => 'bra', 'BraA10t44570Z' => 'bra', 'C01p02670' => 'bna', 'C01p20260' => 'bna', 'C02p05890' => 'bna', 'C03p19530' => 'bna', 'C05p17470' => 'bna', 'C07p53900' => 'bna', 'C07p61630' => 'bna', 'C08p16800' => 'bna', 'C08p42810' => 'bna', 'C09p39480' => 'bna', 'C09p63980' => 'bna', 'CAN.G1001.7' => 'can', 'CAN.G1034.55' => 'can', 'CAN.G143.7' => 'can', 'CAN.G3340.1' => 'can', 'CAN.G358.19' => 'can', 'CAN.G373.2' => 'can', 'CAN.G674.16' => 'can', 'CAN.G674.17' => 'can', 'CAN.G674.18' => 'can', 'CAN.G732.2' => 'can', 'CAN.G732.3' => 'can', 'CAN.G993.39' => 'can', 'CANSAT01G2052' => 'cansat', 'CANSAT80G0070' => 'cansat', 'CANSAT80G0483' => 'cansat', 'CANSAT80G0625' => 'cansat', 'CARHR019690' => 'chi', 'CARHR080280' => 'chi', 'CARHR152750' => 'chi', 'CARHR152760' => 'chi', 'CARHR152770' => 'chi', 'CARHR200340' => 'chi', 'CARHR232370' => 'chi', 'CARHR244670' => 'chi', 'CARHR244680' => 'chi', 'CARHR257520' => 'chi', 'Carub.0001s1872' => 'cru', 'Carub.0006s1130' => 'cru', 'Carub.0007s0396' => 'cru', 'Carub.0007s0397' => 'cru', 'Carub.0007s1608' => 'cru', 'Carub.0008s1068' => 'cru', 'Carub.0008s1077' => 'cru', 'Ca_16158_v3' => 'car', 'Ca_17571_v3' => 'car', 'Ca_21936_v3' => 'car', 'Ca_22350_v3' => 'car', 'CBR_g22445' => 'cbr', 'CBR_g26290' => 'cbr', 'Cc04_g09610' => 'ccan', 'Cc04_g12280' => 'ccan', 'Cc07_g10230' => 'ccan', 'CDE02G0093' => 'cde', 'CDE02G0701' => 'cde', 'CDE04G1050' => 'cde', 'CDE05G1833' => 'cde', 'CDE05G3058' => 'cde', 'CDE05G3380' => 'cde', 'CDE06G0536' => 'cde', 'Cfa006923' => 'cfa', 'Cfa009402' => 'cfa', 'Cfa018751' => 'cfa', 'Cfa019164' => 'cfa', 'Cfa022935' => 'cfa', 'Ciclev10019081m.g' => 'ccl', 'Ciclev10025076m.g' => 'ccl', 'Ciclev10030712m.g' => 'ccl', 'Ciclev10033760m.g' => 'ccl', 'CiPaw.05G105600' => 'cil', 'CiPaw.08G136700' => 'cil', 'CiPaw.11G003900' => 'cil', 'CiPaw.11G023700' => 'cil', 'CiPaw.12G003700' => 'cil', 'ClCG06G017100' => 'cla', 'ClCG06G018110' => 'cla', 'ClCG07G008800' => 'cla', 'ClCG07G015330' => 'cla', 'COL.COLO4_13698' => 'col', 'COL.COLO4_16659' => 'col', 'COL.COLO4_21986' => 'col', 'COL.COLO4_24049' => 'col', 'COL.COLO4_29061' => 'col', 'COL.COLO4_29075' => 'col', 'COL.COLO4_30094' => 'col', 'Cpa.g.c33689' => 'cpa', 'Cpa.g.sc108.39' => 'cpa', 'Cpa.g.sc108.41' => 'cpa', 'Cpa.g.sc1163.1' => 'cpa', 'Cpa.g.sc4.155' => 'cpa', 'Cpa.g.sc6.194' => 'cpa', 'CsaV3_1G000340' => 'csa', 'CsaV3_1G001400' => 'csa', 'CsaV3_4G002220' => 'csa', 'CsaV3_4G005370' => 'csa', 'CSS0007487' => 'camsi', 'CSS0008066' => 'camsi', 'CSS0009120' => 'camsi', 'CSS0015512' => 'camsi', 'CSS0022409' => 'camsi', 'CSS0025358' => 'camsi', 'CSS0044547' => 'camsi', 'DCAR_013057' => 'dca', 'DCAR_015058' => 'dca', 'DCAR_016027' => 'dca', 'DCAR_017327' => 'dca', 'DCAR_020743' => 'dca', 'DCAR_026157' => 'dca', 'DCAR_032339' => 'dca', 'DCAR_032340' => 'dca', 'Dinv11200' => 'din', 'Dinv11201' => 'din', 'Dinv20631' => 'din', 'Dinv23182' => 'din', 'Dinv33466' => 'din', 'Dinv33583' => 'din', 'Dinv38565' => 'din', 'Duzib068G0200' => 'dzi', 'Duzib147G0132' => 'dzi', 'Duzib147G0635' => 'dzi', 'Duzib205G1670' => 'dzi', 'Duzib251G0606' => 'dzi', 'ECA232G3336' => 'eca', 'ECA232G3763' => 'eca', 'ECA232G4845' => 'eca', 'ECA234G1607' => 'eca', 'ECA246G0932' => 'eca', 'ECA247G0781' => 'eca', 'ECA247G1932' => 'eca', 'ECA247G2079' => 'eca', 'ECA247G3338' => 'eca', 'ECA247G4115' => 'eca', 'EL10Ac3g06552' => 'bvu', 'EL10Ac5g10721' => 'bvu', 'EL10Ac5g10722' => 'bvu', 'EL10Ac5g10723' => 'bvu', 'EL10Ac5g11361' => 'bvu', 'EL10Ac6g13553' => 'bvu', 'EL10As8g23872' => 'bvu', 'Eucgr.B00250' => 'egr', 'Eucgr.B00251' => 'egr', 'Eucgr.B03533' => 'egr', 'Eucgr.I02381' => 'egr', 'Eucgr.K02700' => 'egr', 'FAN02G0174' => 'fan', 'FAN02G3146' => 'fan', 'FAN04G1672' => 'fan', 'FAN04G2273' => 'fan', 'FAN05G2791' => 'fan', 'FAN05G4035' => 'fan', 'FAN07G0834' => 'fan', 'FAN08G1198' => 'fan', 'FAN09G4182' => 'fan', 'FAN12G0496' => 'fan', 'FAN13G1027' => 'fan', 'FAN13G2951' => 'fan', 'FAN14G0705' => 'fan', 'FAN14G0720' => 'fan', 'FAN17G0201' => 'fan', 'FAN17G2665' => 'fan', 'FAN18G1456' => 'fan', 'FAN18G1525' => 'fan', 'FAN18G3500' => 'fan', 'FAN28G2670' => 'fan', 'FvH4_1g12391' => 'fve', 'FvH4_4g23220' => 'fve', 'FvH4_5g08810' => 'fve', 'FvH4_5g28960' => 'fve', 'FvH4_6g42820' => 'fve', 'FvH4_6g51110' => 'fve', 'Glyma.02G051802' => 'gma', 'Glyma.04G185300' => 'gma', 'Glyma.05G202900' => 'gma', 'Glyma.08G010300' => 'gma', 'Glyma.16G131900' => 'gma', 'Glyma.17G087900' => 'gma', 'Gohir.A07G048600' => 'ghi', 'Gohir.A11G179000' => 'ghi', 'Gohir.A12G140900' => 'ghi', 'Gohir.A12G140950' => 'ghi', 'Gohir.A12G191700' => 'ghi', 'Gohir.A13G086300' => 'ghi', 'Gohir.D07G052900' => 'ghi', 'Gohir.D11G186600' => 'ghi', 'Gohir.D12G145575' => 'ghi', 'Gohir.D12G145650' => 'ghi', 'Gohir.D12G145725' => 'ghi', 'Gohir.D12G194050' => 'ghi', 'Gohir.D13G091800' => 'ghi', 'Gorai.001G055900' => 'gra', 'Gorai.007G198400' => 'gra', 'Gorai.008G157000' => 'gra', 'Gorai.008G157100' => 'gra', 'Gorai.008G208700' => 'gra', 'Gorai.010G138700' => 'gra', 'GSVIVG01000977001' => 'vvi', 'GSVIVG01007708001' => 'vvi', 'GSVIVG01008587001' => 'vvi', 'GSVIVG01018849001' => 'vvi', 'GSVIVG01032432001' => 'vvi', 'HanXRQChr02g0034131' => 'han', 'HanXRQChr02g0035981' => 'han', 'HanXRQChr02g0035991' => 'han', 'HanXRQChr05g0155611' => 'han', 'HanXRQChr05g0155621' => 'han', 'HanXRQChr08g0236501' => 'han', 'HanXRQChr09g0261321' => 'han', 'HanXRQChr09g0272081' => 'han', 'HanXRQChr10g0310741' => 'han', 'HanXRQChr11g0325591' => 'han', 'HanXRQChr12g0385691' => 'han', 'HanXRQChr13g0387801' => 'han', 'HanXRQChr15g0463011' => 'han', 'Haze_03826' => 'cav', 'Haze_03827' => 'cav', 'Haze_07183' => 'cav', 'Haze_07537' => 'cav', 'Haze_07539' => 'cav', 'Haze_12461' => 'cav', 'Haze_16115' => 'cav', 'Haze_16808' => 'cav', 'Haze_18531' => 'cav', 'Hma1.2p1_0046F.1_g026700' => 'hma', 'Hma1.2p1_0046F.1_g026710' => 'hma', 'Hma1.2p1_0168F.1_g074340' => 'hma', 'Hma1.2p1_0266F.1_g107030' => 'hma', 'Hma1.2p1_0266F.1_g107060' => 'hma', 'Hma1.2p1_0275F.1_g110510' => 'hma', 'Hma1.2p1_0592F.1_g185490' => 'hma', 'Hma1.2p1_0592F.1_g185500' => 'hma', 'Hma1.2p1_0592F.1_g185510' => 'hma', 'Hma1.2p1_0592F.1_g185520' => 'hma', 'Hma1.2p1_0592F.1_g185530' => 'hma', 'Hma1.2p1_0818F.1_g223450' => 'hma', 'HPP92_009708' => 'vpl', 'HPP92_009793' => 'vpl', 'HPP92_009796' => 'vpl', 'HPP92_009797' => 'vpl', 'HPP92_014940' => 'vpl', 'HPP92_014988' => 'vpl', 'Hund02463' => 'sun', 'Hund02760' => 'sun', 'Hund05071' => 'sun', 'Hund10108' => 'sun', 'Hund11204' => 'sun', 'Hund14016' => 'sun', 'Hund16464' => 'sun', 'Lalb_Chr09g0333391' => 'lal', 'Lalb_Chr11g0070461' => 'lal', 'Lalb_Chr12g0201671' => 'lal', 'Lalb_Chr13g0297161' => 'lal', 'Lj1g0002823' => 'lja', 'Lj3C1074T6' => 'lonja', 'Lj4A212T28' => 'lonja', 'Lj4g0005516' => 'lja', 'Lj4g0013705' => 'lja', 'Lj4g0027865' => 'lja', 'Lj5C92G16' => 'lonja', 'Lj5C92T12' => 'lonja', 'Lj7C596T3' => 'lonja', 'Lj9A446G59' => 'lonja', 'Lj9A482G21' => 'lonja', 'Lsat_1_v5_gn_1_28261' => 'lsa', 'Lsat_1_v5_gn_1_28281' => 'lsa', 'Lsat_1_v5_gn_1_32721' => 'lsa', 'Lsat_1_v5_gn_4_151760' => 'lsa', 'Lsat_1_v5_gn_4_2120' => 'lsa', 'Lsat_1_v5_gn_4_75761' => 'lsa', 'Lsat_1_v5_gn_5_10920' => 'lsa', 'Manes.02G099900' => 'mes', 'Manes.11G096200' => 'mes', 'Manes.12G007200' => 'mes', 'Manes.14G048300' => 'mes', 'Manes.17G114700' => 'mes', 'Mapoly0002s0070' => 'mpo', 'Mapoly0029s0099' => 'mpo', 'MBI07_g24742_MAGBIO' => 'mbi', 'MBI10_g27988_MAGBIO' => 'mbi', 'MBI11_g13057_MAGBIO' => 'mbi', 'MD02G1137200' => 'mdo', 'MD06G1137200' => 'mdo', 'MD07G1122300' => 'mdo', 'MD09G1078200' => 'mdo', 'MD13G1123700' => 'mdo', 'MD14G1151900' => 'mdo', 'MD17G1030900' => 'mdo', 'MD17G1068200' => 'mdo', 'MD17G1068600' => 'mdo', 'Medtr3g077540' => 'mtr', 'Medtr4g105530' => 'mtr', 'Medtr8g076580' => 'mtr', 'Medtr8g076590' => 'mtr', 'Medtr8g096410' => 'mtr', 'MELO3C016411.2' => 'cme', 'MELO3C017780.2' => 'cme', 'MELO3C022560.2' => 'cme', 'MELO3C026187.2' => 'cme', 'MELO3C026286.2' => 'cme', 'MELO3C032854.2' => 'cme', 'Migut.H02495' => 'egut', 'Migut.I00561' => 'egut', 'Migut.K01015' => 'egut', 'Migut.K01016' => 'egut', 'Migut.L00743' => 'egut', 'Migut.L00744' => 'egut', 'Migut.L00746' => 'egut', 'Migut.L00798' => 'egut', 'Migut.L00799' => 'egut', 'Migut.N02096' => 'egut', 'MSTRG.11259' => 'ama', 'MSTRG.23142' => 'ama', 'MSTRG.2499' => 'ama', 'Nitab4.5_0000003g0730' => 'nta', 'Nitab4.5_0000137g0020' => 'nta', 'Nitab4.5_0000721g0210' => 'nta', 'Nitab4.5_0000723g0050' => 'nta', 'Nitab4.5_0000913g0070' => 'nta', 'Nitab4.5_0001332g0040' => 'nta', 'Nitab4.5_0001771g0050' => 'nta', 'Nitab4.5_0001918g0050' => 'nta', 'Nitab4.5_0002686g0030' => 'nta', 'Nitab4.5_0003156g0020' => 'nta', 'Nitab4.5_0003383g0040' => 'nta', 'Nitab4.5_0003918g0010' => 'nta', 'Nitab4.5_0006760g0010' => 'nta', 'Nn1g05981' => 'nnu', 'Nn1g06288' => 'nnu', 'Nn3g16371' => 'nnu', 'Nn3g16786' => 'nnu', 'Nn4g22232' => 'nnu', 'Oeu005144.1' => 'oeu', 'Oeu005145.1' => 'oeu', 'Oeu011348.1' => 'oeu', 'Oeu016415.1' => 'oeu', 'Oeu023501.1' => 'oeu', 'Oeu044473.1' => 'oeu', 'Oeu048892.2' => 'oeu', 'Os01g0549200' => 'osa', 'Os02g0469300' => 'osa', 'Os04g0311100' => 'osa', 'Os06g0474900' => 'osa', 'Os10g0181700' => 'osa', 'Os11g0454800' => 'osa', 'Peaxi162Scf00037g00714' => 'pax', 'Peaxi162Scf00084g01217' => 'pax', 'Peaxi162Scf00257g00217' => 'pax', 'Peaxi162Scf00516g00215' => 'pax', 'Peaxi162Scf00689g00123' => 'pax', 'PGR044G2719' => 'pgr', 'PGR083G1360' => 'pgr', 'PGR102G2849' => 'pgr', 'PGR119G2534' => 'pgr', 'PGSC0003DMG400003538' => 'stu', 'PGSC0003DMG400028138' => 'stu', 'PGSC0003DMG400031732' => 'stu', 'PGSC0003DMG400038165' => 'stu', 'Phvul.002G284600' => 'pvu', 'Phvul.003G258200' => 'pvu', 'Phvul.009G176500' => 'pvu', 'Potri.003G167201' => 'ptr', 'Potri.005G118400' => 'ptr', 'Potri.012G089000' => 'ptr', 'Potri.012G102800' => 'ptr', 'Potri.015G079400' => 'ptr', 'Potri.015G100900' => 'ptr', 'Pp3c14_9810' => 'ppa', 'Pp3c15_10450' => 'ppa', 'Pp3c20_19150' => 'ppa', 'Pp3c23_12740' => 'ppa', 'Pp3c23_6310' => 'ppa', 'Pp3c24_3720' => 'ppa', 'Pp3c27_2580' => 'ppa', 'Pp3c9_8990' => 'ppa', 'PRCOL_00002854' => 'pco', 'Prupe.1G221200' => 'ppe', 'Prupe.3G289000' => 'ppe', 'Prupe.5G147000' => 'ppe', 'Prupe.6G157300' => 'ppe', 'Prupe.7G163400' => 'ppe', 'Psat0s2177g0040' => 'psa', 'Psat3g174760' => 'psa', 'Psat3g192160' => 'psa', 'Psat4g058520' => 'psa', 'Psat4g096840' => 'psa', 'Psat7g037320' => 'psa', 'PSO017G1274' => 'pso', 'PSO017G5166' => 'pso', 'PSO063G4558' => 'pso', 'PSO170G4458' => 'pso', 'PSO170G5005' => 'pso', 'PSO210G6156' => 'pso', 'PSO210G6635' => 'pso', 'PSO210G7397' => 'pso', 'PSO210G7700' => 'pso', 'PSO455G0035' => 'pso', 'PSO455G0180' => 'pso', 'PSO478G4515' => 'pso', 'PSO832G1305' => 'pso', 'PSO832G3489' => 'pso', 'QL02p075247' => 'qlo', 'QL03p051148' => 'qlo', 'QL05p010313' => 'qlo', 'QL06p034627' => 'qlo', 'QL10p001889' => 'qlo', 'QL10p010846' => 'qlo', 'RcHm_v2.0_Chr1g0350621' => 'rch', 'RcHm_v2.0_Chr1g0350641' => 'rch', 'RcHm_v2.0_Chr2g0092891' => 'rch', 'RcHm_v2.0_Chr2g0100251' => 'rch', 'RcHm_v2.0_Chr2g0158661' => 'rch', 'RcHm_v2.0_Chr2g0172741' => 'rch', 'RcHm_v2.0_Chr4g0429571' => 'rch', 'RcHm_v2.0_Chr5g0042471' => 'rch', 'RcHm_v2.0_Chr7g0189451' => 'rch', 'Rhsim08G0052000' => 'rsi', 'Rhsim08G0174400' => 'rsi', 'Rhsim08G0193200' => 'rsi', 'Rhsim10G0214800' => 'rsi', 'Rhsim10G0214900' => 'rsi', 'Rhsim10G0215000' => 'rsi', 'Rhsim12G0022900' => 'rsi', 'Rhsim12G0177500' => 'rsi', 'Rhsim12G0177700' => 'rsi', 'Sabra03G0122600' => 'sbr', 'Sabra05G0097400' => 'sbr', 'Sabra12G0064100' => 'sbr', 'Sabra15G0121300' => 'sbr', 'SalBow2G0642' => 'sbo', 'SalBow5G2667' => 'sbo', 'SalBow5G4873' => 'sbo', 'SalBow8G2395' => 'sbo', 'Sc03g0003290' => 'sci', 'Sc10g0010130' => 'sci', 'Sc22g0003650' => 'sci', 'Sed0001603' => 'sed', 'Sed0004259' => 'sed', 'Sed0006789' => 'sed', 'Sed0011838' => 'sed', 'Sed0012964' => 'sed', 'Sed0016383' => 'sed', 'Sed0019010' => 'sed', 'Sed0020188' => 'sed', 'SEGI_04702' => 'sgi', 'SEGI_17231' => 'sgi', 'SEGI_18877' => 'sgi', 'SEGI_25196' => 'sgi', 'SEGI_25515' => 'sgi', 'SEGI_28445' => 'sgi', 'SEGI_37452' => 'sgi', 'SGA_v2.0_scaffold188G40336' => 'sas', 'SGA_v2.0_scaffold228G43247' => 'sas', 'SGA_v2.0_scaffold280G46853' => 'sas', 'SGA_v2.0_scaffold34G13808' => 'sas', 'SGA_v2.0_scaffold40G15576' => 'sas', 'SGA_v2.0_scaffold611G53188' => 'sas', 'SGA_v2.0_scaffold78G25461' => 'sas', 'SGA_v2.0_scaffold90G27888' => 'sas', 'SHI08601' => 'shi', 'SHI08606' => 'shi', 'SHI17117' => 'shi', 'SHI17119' => 'shi', 'SMO118G0201' => 'smo', 'SMO169G0247' => 'smo', 'SMO176G0006' => 'smo', 'SMO176G0015' => 'smo', 'SMO202G0006' => 'smo', 'SMO240G0050' => 'smo', 'SMO286G0009' => 'smo', 'SMO338G0033' => 'smo', 'SMO356G0533' => 'smo', 'SMO364G0382' => 'smo', 'SMO367G0166' => 'smo', 'SMO367G1098' => 'smo', 'Solyc01g009920.3' => 'sly', 'Solyc01g099300.3' => 'sly', 'Solyc02g084700.3' => 'sly', 'Solyc03g097520.3' => 'sly', 'Solyc06g071580.3' => 'sly', 'Solyc10g081760.3' => 'sly', 'Sopen01g005480' => 'spe', 'Sopen01g042850' => 'spe', 'Sopen02g029370' => 'spe', 'Sopen03g028280' => 'spe', 'Sopen06g027870' => 'spe', 'Sopen10g032270' => 'spe', 'Sp5g18180' => 'spa', 'Sp6g12880' => 'spa', 'Sp6g30850' => 'spa', 'Sp7g22960' => 'spa', 'Sp7g34010' => 'spa', 'SpUn1326_0010' => 'spa', 'TAR371G0242' => 'tar', 'TAR622G0638' => 'tar', 'TAR628G1548' => 'tar', 'TAR629G1079' => 'tar', 'TAR629G3413' => 'tar', 'THA.LOC104804249' => 'tha', 'THA.LOC104808315' => 'tha', 'THA.LOC104809238' => 'tha', 'THA.LOC104825484' => 'tha', 'Thecc.01G025500' => 'tca', 'Thecc.03G015800' => 'tca', 'Thecc.03G018000' => 'tca', 'Thecc.03G134800' => 'tca', 'Thecc.04G014700' => 'tca', 'Thhalv10006991m.g' => 'esa', 'Thhalv10012707m.g' => 'esa', 'Thhalv10015739m.g' => 'esa', 'Thhalv10024553m.g' => 'esa', 'Thhalv10024673m.g' => 'esa', 'Thhalv10029187m.g' => 'esa', 'TPR.G12971' => 'tpr', 'TPR.G29396' => 'tpr', 'TPR.G33376' => 'tpr', 'TPR.G35508' => 'tpr', 'TPR.G35516' => 'tpr', 'TPR.G37317' => 'tpr', 'TPR.G37389' => 'tpr', 'TPR.G37523' => 'tpr', 'TPR.G559' => 'tpr', 'TWI14G0070' => 'twi', 'TWI14G0729' => 'twi', 'TWI18G0596' => 'twi', 'TWI39G0780' => 'twi', 'TWI39G0850' => 'twi', 'TWI73G1052' => 'twi', 'unitig_52.g17485' => 'ugi', 'unitig_61.g26355' => 'ugi', 'vmacro01040' => 'vma', 'vmacro16731' => 'vma', 'vmacro18270' => 'vma', 'vmacro19142' => 'vma', 'vmacro19407' => 'vma', 'vmacro19408' => 'vma', 'vmacro21899' => 'vma', 'vmacro21900' => 'vma', 'vmacro21901' => 'vma', 'VMungo0251G0490' => 'vmu', 'VMungo0251G1748' => 'vmu', 'VMungo1309G0421' => 'vmu', 'Zm00001eb086500' => 'zma', 'Zm00001eb150680' => 'zma', 'Zm00001eb162330' => 'zma', 'Zm00001eb203130' => 'zma', 'Zm00001eb369480' => 'zma', 'Zm00001eb382340' => 'zma', 'Zm00001eb416360' => 'zma' ), 'gf_id' => 'HOM05D000902', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000902' ), 'data_identifier' => 'HOM05D000902', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000902', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '663', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02470' => 'bna', 'A01p16260' => 'bna', 'A02p01680' => 'bna', 'A03p16600' => 'bna', 'A03p55660' => 'bna', 'A03p64160' => 'bna', 'A03p64170' => 'bna', 'A08p31900' => 'bna', 'A09p59530' => 'bna', 'A10p08230' => 'bna', 'A10p25090' => 'bna', 'Aa31LG3G7100' => 'aar', 'Aa31LG3G7110' => 'aar', 'Aa31LG6G13160' => 'aar', 'Aa31LG7G10770' => 'aar', 'Aa31LG7G3830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2723' => 'aag', 'Actinidia08045' => 'ach', 'Actinidia08888' => 'ach', 'Actinidia18333' => 'ach', 'Actinidia19334' => 'ach', 'Actinidia25552' => 'ach', 'Actinidia26089' => 'ach', 'Actinidia30615' => 'ach', 'Actinidia30616' => 'ach', 'Actinidia33083' => 'ach', 'Actinidia35762' => 'ach', 'Ah.02g110620' => 'amhyb', 'Ah.11g046390' => 'amhyb', 'AL1G31670' => 'aly', 'AL6G23730' => 'aly', 'AL7G14740' => 'aly', 'AL7G14750' => 'aly', 'AL7G14760' => 'aly', 'AL7G28220' => 'aly', 'AL8G24940' => 'aly', 'Aqoxy3G01665' => 'aox', 'Aqoxy3G02853' => 'aox', 'Aqoxy5G01513' => 'aox', 'Aqoxy5G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8SKA4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ75LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKDA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0LJZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7REX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZP4YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWX7I5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2QKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS0L9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPCD8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q161UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC7XCF' => 'arhy', 'AT1G19100' => 'ath', 'AT4G24970' => 'ath', 'AT4G36270' => 'ath', 'AT4G36280' => 'ath', 'AT4G36290' => 'ath', 'AT5G13130' => 'ath', 'AT5G50780' => 'ath', 'ATR0582G266' => 'atr', 'ATR0661G195' => 'atr', 'ATR1152G031' => 'atr', 'Atru.chr11.2382' => 'acertr', 'Atru.chr12.2337' => 'acertr', 'Atru.chr3.744' => 'acertr', 'Atru.chr6.1870' => 'acertr', 'Atru.chr9.2515' => 'acertr', 'AUR62004120' => 'cqu', 'AUR62005667' => 'cqu', 'AUR62007634' => 'cqu', 'AUR62008186' => 'cqu', 'AUR62008187' => 'cqu', 'AUR62008188' => 'cqu', 'AUR62027954' => 'cqu', 'AUR62028766' => 'cqu', 'AUR62028767' => 'cqu', 'AUR62028768' => 'cqu', 'AUR62028886' => 'cqu', 'AUR62029563' => 'cqu', 'AUR62038832' => 'cqu', 'BcaB01g04149' => 'bca', 'BcaB03g12940' => 'bca', 'BcaB03g13090' => 'bca', 'BcaB03g14466' => 'bca', 'BcaB05g24035' => 'bca', 'BcaC01g06050' => 'bca', 'BcaC04g19148' => 'bca', 'BcaC04g20761' => 'bca', 'BcaC06g32845' => 'bca', 'BcaC07g41274' => 'bca', 'BcaC09g50827' => 'bca', 'BcaNung00741' => 'bca', 'BcaNung00742' => 'bca', 'BcaNung01859' => 'bca', 'BcaNung03985' => 'bca', 'BcaNung03989' => 'bca', 'BcaNung05661' => 'bca', 'BolC1t00257H' => 'bol', 'BolC1t01956H' => 'bol', 'BolC2t06534H' => 'bol', 'BolC3t14334H' => 'bol', 'BolC5t30451H' => 'bol', 'BolC7t45880H' => 'bol', 'BolC7t46586H' => 'bol', 'BolC8t49301H' => 'bol', 'BolC8t51837H' => 'bol', 'BolC9t56822H' => 'bol', 'BolC9t59235H' => 'bol', 'BraA01t00234Z' => 'bra', 'BraA01t01563Z' => 'bra', 'BraA02t05147Z' => 'bra', 'BraA03t10947Z' => 'bra', 'BraA03t14633Z' => 'bra', 'BraA08t35112Z' => 'bra', 'BraA09t41330Z' => 'bra', 'BraA10t44570Z' => 'bra', 'C01p02670' => 'bna', 'C01p20260' => 'bna', 'C02p05890' => 'bna', 'C03p19530' => 'bna', 'C05p17470' => 'bna', 'C07p53900' => 'bna', 'C07p61630' => 'bna', 'C08p16800' => 'bna', 'C08p42810' => 'bna', 'C09p39480' => 'bna', 'C09p63980' => 'bna', 'CAN.G1001.7' => 'can', 'CAN.G1034.55' => 'can', 'CAN.G143.7' => 'can', 'CAN.G3340.1' => 'can', 'CAN.G358.19' => 'can', 'CAN.G373.2' => 'can', 'CAN.G674.16' => 'can', 'CAN.G674.17' => 'can', 'CAN.G674.18' => 'can', 'CAN.G732.2' => 'can', 'CAN.G732.3' => 'can', 'CAN.G993.39' => 'can', 'CANSAT01G2052' => 'cansat', 'CANSAT80G0070' => 'cansat', 'CANSAT80G0483' => 'cansat', 'CANSAT80G0625' => 'cansat', 'CARHR019690' => 'chi', 'CARHR080280' => 'chi', 'CARHR152750' => 'chi', 'CARHR152760' => 'chi', 'CARHR152770' => 'chi', 'CARHR200340' => 'chi', 'CARHR232370' => 'chi', 'CARHR244670' => 'chi', 'CARHR244680' => 'chi', 'CARHR257520' => 'chi', 'Carub.0001s1872' => 'cru', 'Carub.0006s1130' => 'cru', 'Carub.0007s0396' => 'cru', 'Carub.0007s0397' => 'cru', 'Carub.0007s1608' => 'cru', 'Carub.0008s1068' => 'cru', 'Carub.0008s1077' => 'cru', 'Ca_16158_v3' => 'car', 'Ca_17571_v3' => 'car', 'Ca_21936_v3' => 'car', 'Ca_22350_v3' => 'car', 'CBR_g22445' => 'cbr', 'CBR_g26290' => 'cbr', 'Cc04_g09610' => 'ccan', 'Cc04_g12280' => 'ccan', 'Cc07_g10230' => 'ccan', 'CDE02G0093' => 'cde', 'CDE02G0701' => 'cde', 'CDE04G1050' => 'cde', 'CDE05G1833' => 'cde', 'CDE05G3058' => 'cde', 'CDE05G3380' => 'cde', 'CDE06G0536' => 'cde', 'Cfa006923' => 'cfa', 'Cfa009402' => 'cfa', 'Cfa018751' => 'cfa', 'Cfa019164' => 'cfa', 'Cfa022935' => 'cfa', 'Ciclev10019081m.g' => 'ccl', 'Ciclev10025076m.g' => 'ccl', 'Ciclev10030712m.g' => 'ccl', 'Ciclev10033760m.g' => 'ccl', 'CiPaw.05G105600' => 'cil', 'CiPaw.08G136700' => 'cil', 'CiPaw.11G003900' => 'cil', 'CiPaw.11G023700' => 'cil', 'CiPaw.12G003700' => 'cil', 'ClCG06G017100' => 'cla', 'ClCG06G018110' => 'cla', 'ClCG07G008800' => 'cla', 'ClCG07G015330' => 'cla', 'COL.COLO4_13698' => 'col', 'COL.COLO4_16659' => 'col', 'COL.COLO4_21986' => 'col', 'COL.COLO4_24049' => 'col', 'COL.COLO4_29061' => 'col', 'COL.COLO4_29075' => 'col', 'COL.COLO4_30094' => 'col', 'Cpa.g.c33689' => 'cpa', 'Cpa.g.sc108.39' => 'cpa', 'Cpa.g.sc108.41' => 'cpa', 'Cpa.g.sc1163.1' => 'cpa', 'Cpa.g.sc4.155' => 'cpa', 'Cpa.g.sc6.194' => 'cpa', 'CsaV3_1G000340' => 'csa', 'CsaV3_1G001400' => 'csa', 'CsaV3_4G002220' => 'csa', 'CsaV3_4G005370' => 'csa', 'CSS0007487' => 'camsi', 'CSS0008066' => 'camsi', 'CSS0009120' => 'camsi', 'CSS0015512' => 'camsi', 'CSS0022409' => 'camsi', 'CSS0025358' => 'camsi', 'CSS0044547' => 'camsi', 'DCAR_013057' => 'dca', 'DCAR_015058' => 'dca', 'DCAR_016027' => 'dca', 'DCAR_017327' => 'dca', 'DCAR_020743' => 'dca', 'DCAR_026157' => 'dca', 'DCAR_032339' => 'dca', 'DCAR_032340' => 'dca', 'Dinv11200' => 'din', 'Dinv11201' => 'din', 'Dinv20631' => 'din', 'Dinv23182' => 'din', 'Dinv33466' => 'din', 'Dinv33583' => 'din', 'Dinv38565' => 'din', 'Duzib068G0200' => 'dzi', 'Duzib147G0132' => 'dzi', 'Duzib147G0635' => 'dzi', 'Duzib205G1670' => 'dzi', 'Duzib251G0606' => 'dzi', 'ECA232G3336' => 'eca', 'ECA232G3763' => 'eca', 'ECA232G4845' => 'eca', 'ECA234G1607' => 'eca', 'ECA246G0932' => 'eca', 'ECA247G0781' => 'eca', 'ECA247G1932' => 'eca', 'ECA247G2079' => 'eca', 'ECA247G3338' => 'eca', 'ECA247G4115' => 'eca', 'EL10Ac3g06552' => 'bvu', 'EL10Ac5g10721' => 'bvu', 'EL10Ac5g10722' => 'bvu', 'EL10Ac5g10723' => 'bvu', 'EL10Ac5g11361' => 'bvu', 'EL10Ac6g13553' => 'bvu', 'EL10As8g23872' => 'bvu', 'Eucgr.B00250' => 'egr', 'Eucgr.B00251' => 'egr', 'Eucgr.B03533' => 'egr', 'Eucgr.I02381' => 'egr', 'Eucgr.K02700' => 'egr', 'FAN02G0174' => 'fan', 'FAN02G3146' => 'fan', 'FAN04G1672' => 'fan', 'FAN04G2273' => 'fan', 'FAN05G2791' => 'fan', 'FAN05G4035' => 'fan', 'FAN07G0834' => 'fan', 'FAN08G1198' => 'fan', 'FAN09G4182' => 'fan', 'FAN12G0496' => 'fan', 'FAN13G1027' => 'fan', 'FAN13G2951' => 'fan', 'FAN14G0705' => 'fan', 'FAN14G0720' => 'fan', 'FAN17G0201' => 'fan', 'FAN17G2665' => 'fan', 'FAN18G1456' => 'fan', 'FAN18G1525' => 'fan', 'FAN18G3500' => 'fan', 'FAN28G2670' => 'fan', 'FvH4_1g12391' => 'fve', 'FvH4_4g23220' => 'fve', 'FvH4_5g08810' => 'fve', 'FvH4_5g28960' => 'fve', 'FvH4_6g42820' => 'fve', 'FvH4_6g51110' => 'fve', 'Glyma.02G051802' => 'gma', 'Glyma.04G185300' => 'gma', 'Glyma.05G202900' => 'gma', 'Glyma.08G010300' => 'gma', 'Glyma.16G131900' => 'gma', 'Glyma.17G087900' => 'gma', 'Gohir.A07G048600' => 'ghi', 'Gohir.A11G179000' => 'ghi', 'Gohir.A12G140900' => 'ghi', 'Gohir.A12G140950' => 'ghi', 'Gohir.A12G191700' => 'ghi', 'Gohir.A13G086300' => 'ghi', 'Gohir.D07G052900' => 'ghi', 'Gohir.D11G186600' => 'ghi', 'Gohir.D12G145575' => 'ghi', 'Gohir.D12G145650' => 'ghi', 'Gohir.D12G145725' => 'ghi', 'Gohir.D12G194050' => 'ghi', 'Gohir.D13G091800' => 'ghi', 'Gorai.001G055900' => 'gra', 'Gorai.007G198400' => 'gra', 'Gorai.008G157000' => 'gra', 'Gorai.008G157100' => 'gra', 'Gorai.008G208700' => 'gra', 'Gorai.010G138700' => 'gra', 'GSVIVG01000977001' => 'vvi', 'GSVIVG01007708001' => 'vvi', 'GSVIVG01008587001' => 'vvi', 'GSVIVG01018849001' => 'vvi', 'GSVIVG01032432001' => 'vvi', 'HanXRQChr02g0034131' => 'han', 'HanXRQChr02g0035981' => 'han', 'HanXRQChr02g0035991' => 'han', 'HanXRQChr05g0155611' => 'han', 'HanXRQChr05g0155621' => 'han', 'HanXRQChr08g0236501' => 'han', 'HanXRQChr09g0261321' => 'han', 'HanXRQChr09g0272081' => 'han', 'HanXRQChr10g0310741' => 'han', 'HanXRQChr11g0325591' => 'han', 'HanXRQChr12g0385691' => 'han', 'HanXRQChr13g0387801' => 'han', 'HanXRQChr15g0463011' => 'han', 'Haze_03826' => 'cav', 'Haze_03827' => 'cav', 'Haze_07183' => 'cav', 'Haze_07537' => 'cav', 'Haze_07539' => 'cav', 'Haze_12461' => 'cav', 'Haze_16115' => 'cav', 'Haze_16808' => 'cav', 'Haze_18531' => 'cav', 'Hma1.2p1_0046F.1_g026700' => 'hma', 'Hma1.2p1_0046F.1_g026710' => 'hma', 'Hma1.2p1_0168F.1_g074340' => 'hma', 'Hma1.2p1_0266F.1_g107030' => 'hma', 'Hma1.2p1_0266F.1_g107060' => 'hma', 'Hma1.2p1_0275F.1_g110510' => 'hma', 'Hma1.2p1_0592F.1_g185490' => 'hma', 'Hma1.2p1_0592F.1_g185500' => 'hma', 'Hma1.2p1_0592F.1_g185510' => 'hma', 'Hma1.2p1_0592F.1_g185520' => 'hma', 'Hma1.2p1_0592F.1_g185530' => 'hma', 'Hma1.2p1_0818F.1_g223450' => 'hma', 'HPP92_009708' => 'vpl', 'HPP92_009793' => 'vpl', 'HPP92_009796' => 'vpl', 'HPP92_009797' => 'vpl', 'HPP92_014940' => 'vpl', 'HPP92_014988' => 'vpl', 'Hund02463' => 'sun', 'Hund02760' => 'sun', 'Hund05071' => 'sun', 'Hund10108' => 'sun', 'Hund11204' => 'sun', 'Hund14016' => 'sun', 'Hund16464' => 'sun', 'Lalb_Chr09g0333391' => 'lal', 'Lalb_Chr11g0070461' => 'lal', 'Lalb_Chr12g0201671' => 'lal', 'Lalb_Chr13g0297161' => 'lal', 'Lj1g0002823' => 'lja', 'Lj3C1074T6' => 'lonja', 'Lj4A212T28' => 'lonja', 'Lj4g0005516' => 'lja', 'Lj4g0013705' => 'lja', 'Lj4g0027865' => 'lja', 'Lj5C92G16' => 'lonja', 'Lj5C92T12' => 'lonja', 'Lj7C596T3' => 'lonja', 'Lj9A446G59' => 'lonja', 'Lj9A482G21' => 'lonja', 'Lsat_1_v5_gn_1_28261' => 'lsa', 'Lsat_1_v5_gn_1_28281' => 'lsa', 'Lsat_1_v5_gn_1_32721' => 'lsa', 'Lsat_1_v5_gn_4_151760' => 'lsa', 'Lsat_1_v5_gn_4_2120' => 'lsa', 'Lsat_1_v5_gn_4_75761' => 'lsa', 'Lsat_1_v5_gn_5_10920' => 'lsa', 'Manes.02G099900' => 'mes', 'Manes.11G096200' => 'mes', 'Manes.12G007200' => 'mes', 'Manes.14G048300' => 'mes', 'Manes.17G114700' => 'mes', 'Mapoly0002s0070' => 'mpo', 'Mapoly0029s0099' => 'mpo', 'MBI07_g24742_MAGBIO' => 'mbi', 'MBI10_g27988_MAGBIO' => 'mbi', 'MBI11_g13057_MAGBIO' => 'mbi', 'MD02G1137200' => 'mdo', 'MD06G1137200' => 'mdo', 'MD07G1122300' => 'mdo', 'MD09G1078200' => 'mdo', 'MD13G1123700' => 'mdo', 'MD14G1151900' => 'mdo', 'MD17G1030900' => 'mdo', 'MD17G1068200' => 'mdo', 'MD17G1068600' => 'mdo', 'Medtr3g077540' => 'mtr', 'Medtr4g105530' => 'mtr', 'Medtr8g076580' => 'mtr', 'Medtr8g076590' => 'mtr', 'Medtr8g096410' => 'mtr', 'MELO3C016411.2' => 'cme', 'MELO3C017780.2' => 'cme', 'MELO3C022560.2' => 'cme', 'MELO3C026187.2' => 'cme', 'MELO3C026286.2' => 'cme', 'MELO3C032854.2' => 'cme', 'Migut.H02495' => 'egut', 'Migut.I00561' => 'egut', 'Migut.K01015' => 'egut', 'Migut.K01016' => 'egut', 'Migut.L00743' => 'egut', 'Migut.L00744' => 'egut', 'Migut.L00746' => 'egut', 'Migut.L00798' => 'egut', 'Migut.L00799' => 'egut', 'Migut.N02096' => 'egut', 'MSTRG.11259' => 'ama', 'MSTRG.23142' => 'ama', 'MSTRG.2499' => 'ama', 'Nitab4.5_0000003g0730' => 'nta', 'Nitab4.5_0000137g0020' => 'nta', 'Nitab4.5_0000721g0210' => 'nta', 'Nitab4.5_0000723g0050' => 'nta', 'Nitab4.5_0000913g0070' => 'nta', 'Nitab4.5_0001332g0040' => 'nta', 'Nitab4.5_0001771g0050' => 'nta', 'Nitab4.5_0001918g0050' => 'nta', 'Nitab4.5_0002686g0030' => 'nta', 'Nitab4.5_0003156g0020' => 'nta', 'Nitab4.5_0003383g0040' => 'nta', 'Nitab4.5_0003918g0010' => 'nta', 'Nitab4.5_0006760g0010' => 'nta', 'Nn1g05981' => 'nnu', 'Nn1g06288' => 'nnu', 'Nn3g16371' => 'nnu', 'Nn3g16786' => 'nnu', 'Nn4g22232' => 'nnu', 'Oeu005144.1' => 'oeu', 'Oeu005145.1' => 'oeu', 'Oeu011348.1' => 'oeu', 'Oeu016415.1' => 'oeu', 'Oeu023501.1' => 'oeu', 'Oeu044473.1' => 'oeu', 'Oeu048892.2' => 'oeu', 'Os01g0549200' => 'osa', 'Os02g0469300' => 'osa', 'Os04g0311100' => 'osa', 'Os06g0474900' => 'osa', 'Os10g0181700' => 'osa', 'Os11g0454800' => 'osa', 'Peaxi162Scf00037g00714' => 'pax', 'Peaxi162Scf00084g01217' => 'pax', 'Peaxi162Scf00257g00217' => 'pax', 'Peaxi162Scf00516g00215' => 'pax', 'Peaxi162Scf00689g00123' => 'pax', 'PGR044G2719' => 'pgr', 'PGR083G1360' => 'pgr', 'PGR102G2849' => 'pgr', 'PGR119G2534' => 'pgr', 'PGSC0003DMG400003538' => 'stu', 'PGSC0003DMG400028138' => 'stu', 'PGSC0003DMG400031732' => 'stu', 'PGSC0003DMG400038165' => 'stu', 'Phvul.002G284600' => 'pvu', 'Phvul.003G258200' => 'pvu', 'Phvul.009G176500' => 'pvu', 'Potri.003G167201' => 'ptr', 'Potri.005G118400' => 'ptr', 'Potri.012G089000' => 'ptr', 'Potri.012G102800' => 'ptr', 'Potri.015G079400' => 'ptr', 'Potri.015G100900' => 'ptr', 'Pp3c14_9810' => 'ppa', 'Pp3c15_10450' => 'ppa', 'Pp3c20_19150' => 'ppa', 'Pp3c23_12740' => 'ppa', 'Pp3c23_6310' => 'ppa', 'Pp3c24_3720' => 'ppa', 'Pp3c27_2580' => 'ppa', 'Pp3c9_8990' => 'ppa', 'PRCOL_00002854' => 'pco', 'Prupe.1G221200' => 'ppe', 'Prupe.3G289000' => 'ppe', 'Prupe.5G147000' => 'ppe', 'Prupe.6G157300' => 'ppe', 'Prupe.7G163400' => 'ppe', 'Psat0s2177g0040' => 'psa', 'Psat3g174760' => 'psa', 'Psat3g192160' => 'psa', 'Psat4g058520' => 'psa', 'Psat4g096840' => 'psa', 'Psat7g037320' => 'psa', 'PSO017G1274' => 'pso', 'PSO017G5166' => 'pso', 'PSO063G4558' => 'pso', 'PSO170G4458' => 'pso', 'PSO170G5005' => 'pso', 'PSO210G6156' => 'pso', 'PSO210G6635' => 'pso', 'PSO210G7397' => 'pso', 'PSO210G7700' => 'pso', 'PSO455G0035' => 'pso', 'PSO455G0180' => 'pso', 'PSO478G4515' => 'pso', 'PSO832G1305' => 'pso', 'PSO832G3489' => 'pso', 'QL02p075247' => 'qlo', 'QL03p051148' => 'qlo', 'QL05p010313' => 'qlo', 'QL06p034627' => 'qlo', 'QL10p001889' => 'qlo', 'QL10p010846' => 'qlo', 'RcHm_v2.0_Chr1g0350621' => 'rch', 'RcHm_v2.0_Chr1g0350641' => 'rch', 'RcHm_v2.0_Chr2g0092891' => 'rch', 'RcHm_v2.0_Chr2g0100251' => 'rch', 'RcHm_v2.0_Chr2g0158661' => 'rch', 'RcHm_v2.0_Chr2g0172741' => 'rch', 'RcHm_v2.0_Chr4g0429571' => 'rch', 'RcHm_v2.0_Chr5g0042471' => 'rch', 'RcHm_v2.0_Chr7g0189451' => 'rch', 'Rhsim08G0052000' => 'rsi', 'Rhsim08G0174400' => 'rsi', 'Rhsim08G0193200' => 'rsi', 'Rhsim10G0214800' => 'rsi', 'Rhsim10G0214900' => 'rsi', 'Rhsim10G0215000' => 'rsi', 'Rhsim12G0022900' => 'rsi', 'Rhsim12G0177500' => 'rsi', 'Rhsim12G0177700' => 'rsi', 'Sabra03G0122600' => 'sbr', 'Sabra05G0097400' => 'sbr', 'Sabra12G0064100' => 'sbr', 'Sabra15G0121300' => 'sbr', 'SalBow2G0642' => 'sbo', 'SalBow5G2667' => 'sbo', 'SalBow5G4873' => 'sbo', 'SalBow8G2395' => 'sbo', 'Sc03g0003290' => 'sci', 'Sc10g0010130' => 'sci', 'Sc22g0003650' => 'sci', 'Sed0001603' => 'sed', 'Sed0004259' => 'sed', 'Sed0006789' => 'sed', 'Sed0011838' => 'sed', 'Sed0012964' => 'sed', 'Sed0016383' => 'sed', 'Sed0019010' => 'sed', 'Sed0020188' => 'sed', 'SEGI_04702' => 'sgi', 'SEGI_17231' => 'sgi', 'SEGI_18877' => 'sgi', 'SEGI_25196' => 'sgi', 'SEGI_25515' => 'sgi', 'SEGI_28445' => 'sgi', 'SEGI_37452' => 'sgi', 'SGA_v2.0_scaffold188G40336' => 'sas', 'SGA_v2.0_scaffold228G43247' => 'sas', 'SGA_v2.0_scaffold280G46853' => 'sas', 'SGA_v2.0_scaffold34G13808' => 'sas', 'SGA_v2.0_scaffold40G15576' => 'sas', 'SGA_v2.0_scaffold611G53188' => 'sas', 'SGA_v2.0_scaffold78G25461' => 'sas', 'SGA_v2.0_scaffold90G27888' => 'sas', 'SHI08601' => 'shi', 'SHI08606' => 'shi', 'SHI17117' => 'shi', 'SHI17119' => 'shi', 'SMO118G0201' => 'smo', 'SMO169G0247' => 'smo', 'SMO176G0006' => 'smo', 'SMO176G0015' => 'smo', 'SMO202G0006' => 'smo', 'SMO240G0050' => 'smo', 'SMO286G0009' => 'smo', 'SMO338G0033' => 'smo', 'SMO356G0533' => 'smo', 'SMO364G0382' => 'smo', 'SMO367G0166' => 'smo', 'SMO367G1098' => 'smo', 'Solyc01g009920.3' => 'sly', 'Solyc01g099300.3' => 'sly', 'Solyc02g084700.3' => 'sly', 'Solyc03g097520.3' => 'sly', 'Solyc06g071580.3' => 'sly', 'Solyc10g081760.3' => 'sly', 'Sopen01g005480' => 'spe', 'Sopen01g042850' => 'spe', 'Sopen02g029370' => 'spe', 'Sopen03g028280' => 'spe', 'Sopen06g027870' => 'spe', 'Sopen10g032270' => 'spe', 'Sp5g18180' => 'spa', 'Sp6g12880' => 'spa', 'Sp6g30850' => 'spa', 'Sp7g22960' => 'spa', 'Sp7g34010' => 'spa', 'SpUn1326_0010' => 'spa', 'TAR371G0242' => 'tar', 'TAR622G0638' => 'tar', 'TAR628G1548' => 'tar', 'TAR629G1079' => 'tar', 'TAR629G3413' => 'tar', 'THA.LOC104804249' => 'tha', 'THA.LOC104808315' => 'tha', 'THA.LOC104809238' => 'tha', 'THA.LOC104825484' => 'tha', 'Thecc.01G025500' => 'tca', 'Thecc.03G015800' => 'tca', 'Thecc.03G018000' => 'tca', 'Thecc.03G134800' => 'tca', 'Thecc.04G014700' => 'tca', 'Thhalv10006991m.g' => 'esa', 'Thhalv10012707m.g' => 'esa', 'Thhalv10015739m.g' => 'esa', 'Thhalv10024553m.g' => 'esa', 'Thhalv10024673m.g' => 'esa', 'Thhalv10029187m.g' => 'esa', 'TPR.G12971' => 'tpr', 'TPR.G29396' => 'tpr', 'TPR.G33376' => 'tpr', 'TPR.G35508' => 'tpr', 'TPR.G35516' => 'tpr', 'TPR.G37317' => 'tpr', 'TPR.G37389' => 'tpr', 'TPR.G37523' => 'tpr', 'TPR.G559' => 'tpr', 'TWI14G0070' => 'twi', 'TWI14G0729' => 'twi', 'TWI18G0596' => 'twi', 'TWI39G0780' => 'twi', 'TWI39G0850' => 'twi', 'TWI73G1052' => 'twi', 'unitig_52.g17485' => 'ugi', 'unitig_61.g26355' => 'ugi', 'vmacro01040' => 'vma', 'vmacro16731' => 'vma', 'vmacro18270' => 'vma', 'vmacro19142' => 'vma', 'vmacro19407' => 'vma', 'vmacro19408' => 'vma', 'vmacro21899' => 'vma', 'vmacro21900' => 'vma', 'vmacro21901' => 'vma', 'VMungo0251G0490' => 'vmu', 'VMungo0251G1748' => 'vmu', 'VMungo1309G0421' => 'vmu', 'Zm00001eb086500' => 'zma', 'Zm00001eb150680' => 'zma', 'Zm00001eb162330' => 'zma', 'Zm00001eb203130' => 'zma', 'Zm00001eb369480' => 'zma', 'Zm00001eb382340' => 'zma', 'Zm00001eb416360' => 'zma' ) $gf_id = 'HOM05D000902' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000902' ) $data_identifier = 'HOM05D000902' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 13, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 10, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 6, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 9, 'hma' => (int) 12, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 4, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 6, 'ppa' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 6, 'rch' => (int) 9, 'rsi' => (int) 9, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 12, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 3, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416360' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000902', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '663', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02470' => 'bna', 'A01p16260' => 'bna', 'A02p01680' => 'bna', 'A03p16600' => 'bna', 'A03p55660' => 'bna', 'A03p64160' => 'bna', 'A03p64170' => 'bna', 'A08p31900' => 'bna', 'A09p59530' => 'bna', 'A10p08230' => 'bna', 'A10p25090' => 'bna', 'Aa31LG3G7100' => 'aar', 'Aa31LG3G7110' => 'aar', 'Aa31LG6G13160' => 'aar', 'Aa31LG7G10770' => 'aar', 'Aa31LG7G3830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2723' => 'aag', 'Actinidia08045' => 'ach', 'Actinidia08888' => 'ach', 'Actinidia18333' => 'ach', 'Actinidia19334' => 'ach', 'Actinidia25552' => 'ach', 'Actinidia26089' => 'ach', 'Actinidia30615' => 'ach', 'Actinidia30616' => 'ach', 'Actinidia33083' => 'ach', 'Actinidia35762' => 'ach', 'Ah.02g110620' => 'amhyb', 'Ah.11g046390' => 'amhyb', 'AL1G31670' => 'aly', 'AL6G23730' => 'aly', 'AL7G14740' => 'aly', 'AL7G14750' => 'aly', 'AL7G14760' => 'aly', 'AL7G28220' => 'aly', 'AL8G24940' => 'aly', 'Aqoxy3G01665' => 'aox', 'Aqoxy3G02853' => 'aox', 'Aqoxy5G01513' => 'aox', 'Aqoxy5G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8SKA4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ75LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKDA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0LJZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7REX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZP4YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWX7I5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2QKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS0L9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPCD8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q161UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC7XCF' => 'arhy', 'AT1G19100' => 'ath', 'AT4G24970' => 'ath', 'AT4G36270' => 'ath', 'AT4G36280' => 'ath', 'AT4G36290' => 'ath', 'AT5G13130' => 'ath', 'AT5G50780' => 'ath', 'ATR0582G266' => 'atr', 'ATR0661G195' => 'atr', 'ATR1152G031' => 'atr', 'Atru.chr11.2382' => 'acertr', 'Atru.chr12.2337' => 'acertr', 'Atru.chr3.744' => 'acertr', 'Atru.chr6.1870' => 'acertr', 'Atru.chr9.2515' => 'acertr', 'AUR62004120' => 'cqu', 'AUR62005667' => 'cqu', 'AUR62007634' => 'cqu', 'AUR62008186' => 'cqu', 'AUR62008187' => 'cqu', 'AUR62008188' => 'cqu', 'AUR62027954' => 'cqu', 'AUR62028766' => 'cqu', 'AUR62028767' => 'cqu', 'AUR62028768' => 'cqu', 'AUR62028886' => 'cqu', 'AUR62029563' => 'cqu', 'AUR62038832' => 'cqu', 'BcaB01g04149' => 'bca', 'BcaB03g12940' => 'bca', 'BcaB03g13090' => 'bca', 'BcaB03g14466' => 'bca', 'BcaB05g24035' => 'bca', 'BcaC01g06050' => 'bca', 'BcaC04g19148' => 'bca', 'BcaC04g20761' => 'bca', 'BcaC06g32845' => 'bca', 'BcaC07g41274' => 'bca', 'BcaC09g50827' => 'bca', 'BcaNung00741' => 'bca', 'BcaNung00742' => 'bca', 'BcaNung01859' => 'bca', 'BcaNung03985' => 'bca', 'BcaNung03989' => 'bca', 'BcaNung05661' => 'bca', 'BolC1t00257H' => 'bol', 'BolC1t01956H' => 'bol', 'BolC2t06534H' => 'bol', 'BolC3t14334H' => 'bol', 'BolC5t30451H' => 'bol', 'BolC7t45880H' => 'bol', 'BolC7t46586H' => 'bol', 'BolC8t49301H' => 'bol', 'BolC8t51837H' => 'bol', 'BolC9t56822H' => 'bol', 'BolC9t59235H' => 'bol', 'BraA01t00234Z' => 'bra', 'BraA01t01563Z' => 'bra', 'BraA02t05147Z' => 'bra', 'BraA03t10947Z' => 'bra', 'BraA03t14633Z' => 'bra', 'BraA08t35112Z' => 'bra', 'BraA09t41330Z' => 'bra', 'BraA10t44570Z' => 'bra', 'C01p02670' => 'bna', 'C01p20260' => 'bna', 'C02p05890' => 'bna', 'C03p19530' => 'bna', 'C05p17470' => 'bna', 'C07p53900' => 'bna', 'C07p61630' => 'bna', 'C08p16800' => 'bna', 'C08p42810' => 'bna', 'C09p39480' => 'bna', 'C09p63980' => 'bna', 'CAN.G1001.7' => 'can', 'CAN.G1034.55' => 'can', 'CAN.G143.7' => 'can', 'CAN.G3340.1' => 'can', 'CAN.G358.19' => 'can', 'CAN.G373.2' => 'can', 'CAN.G674.16' => 'can', 'CAN.G674.17' => 'can', 'CAN.G674.18' => 'can', 'CAN.G732.2' => 'can', 'CAN.G732.3' => 'can', 'CAN.G993.39' => 'can', 'CANSAT01G2052' => 'cansat', 'CANSAT80G0070' => 'cansat', 'CANSAT80G0483' => 'cansat', 'CANSAT80G0625' => 'cansat', 'CARHR019690' => 'chi', 'CARHR080280' => 'chi', 'CARHR152750' => 'chi', 'CARHR152760' => 'chi', 'CARHR152770' => 'chi', 'CARHR200340' => 'chi', 'CARHR232370' => 'chi', 'CARHR244670' => 'chi', 'CARHR244680' => 'chi', 'CARHR257520' => 'chi', 'Carub.0001s1872' => 'cru', 'Carub.0006s1130' => 'cru', 'Carub.0007s0396' => 'cru', 'Carub.0007s0397' => 'cru', 'Carub.0007s1608' => 'cru', 'Carub.0008s1068' => 'cru', 'Carub.0008s1077' => 'cru', 'Ca_16158_v3' => 'car', 'Ca_17571_v3' => 'car', 'Ca_21936_v3' => 'car', 'Ca_22350_v3' => 'car', 'CBR_g22445' => 'cbr', 'CBR_g26290' => 'cbr', 'Cc04_g09610' => 'ccan', 'Cc04_g12280' => 'ccan', 'Cc07_g10230' => 'ccan', 'CDE02G0093' => 'cde', 'CDE02G0701' => 'cde', 'CDE04G1050' => 'cde', 'CDE05G1833' => 'cde', 'CDE05G3058' => 'cde', 'CDE05G3380' => 'cde', 'CDE06G0536' => 'cde', 'Cfa006923' => 'cfa', 'Cfa009402' => 'cfa', 'Cfa018751' => 'cfa', 'Cfa019164' => 'cfa', 'Cfa022935' => 'cfa', 'Ciclev10019081m.g' => 'ccl', 'Ciclev10025076m.g' => 'ccl', 'Ciclev10030712m.g' => 'ccl', 'Ciclev10033760m.g' => 'ccl', 'CiPaw.05G105600' => 'cil', 'CiPaw.08G136700' => 'cil', 'CiPaw.11G003900' => 'cil', 'CiPaw.11G023700' => 'cil', 'CiPaw.12G003700' => 'cil', 'ClCG06G017100' => 'cla', 'ClCG06G018110' => 'cla', 'ClCG07G008800' => 'cla', 'ClCG07G015330' => 'cla', 'COL.COLO4_13698' => 'col', 'COL.COLO4_16659' => 'col', 'COL.COLO4_21986' => 'col', 'COL.COLO4_24049' => 'col', 'COL.COLO4_29061' => 'col', 'COL.COLO4_29075' => 'col', 'COL.COLO4_30094' => 'col', 'Cpa.g.c33689' => 'cpa', 'Cpa.g.sc108.39' => 'cpa', 'Cpa.g.sc108.41' => 'cpa', 'Cpa.g.sc1163.1' => 'cpa', 'Cpa.g.sc4.155' => 'cpa', 'Cpa.g.sc6.194' => 'cpa', 'CsaV3_1G000340' => 'csa', 'CsaV3_1G001400' => 'csa', 'CsaV3_4G002220' => 'csa', 'CsaV3_4G005370' => 'csa', 'CSS0007487' => 'camsi', 'CSS0008066' => 'camsi', 'CSS0009120' => 'camsi', 'CSS0015512' => 'camsi', 'CSS0022409' => 'camsi', 'CSS0025358' => 'camsi', 'CSS0044547' => 'camsi', 'DCAR_013057' => 'dca', 'DCAR_015058' => 'dca', 'DCAR_016027' => 'dca', 'DCAR_017327' => 'dca', 'DCAR_020743' => 'dca', 'DCAR_026157' => 'dca', 'DCAR_032339' => 'dca', 'DCAR_032340' => 'dca', 'Dinv11200' => 'din', 'Dinv11201' => 'din', 'Dinv20631' => 'din', 'Dinv23182' => 'din', 'Dinv33466' => 'din', 'Dinv33583' => 'din', 'Dinv38565' => 'din', 'Duzib068G0200' => 'dzi', 'Duzib147G0132' => 'dzi', 'Duzib147G0635' => 'dzi', 'Duzib205G1670' => 'dzi', 'Duzib251G0606' => 'dzi', 'ECA232G3336' => 'eca', 'ECA232G3763' => 'eca', 'ECA232G4845' => 'eca', 'ECA234G1607' => 'eca', 'ECA246G0932' => 'eca', 'ECA247G0781' => 'eca', 'ECA247G1932' => 'eca', 'ECA247G2079' => 'eca', 'ECA247G3338' => 'eca', 'ECA247G4115' => 'eca', 'EL10Ac3g06552' => 'bvu', 'EL10Ac5g10721' => 'bvu', 'EL10Ac5g10722' => 'bvu', 'EL10Ac5g10723' => 'bvu', 'EL10Ac5g11361' => 'bvu', 'EL10Ac6g13553' => 'bvu', 'EL10As8g23872' => 'bvu', 'Eucgr.B00250' => 'egr', 'Eucgr.B00251' => 'egr', 'Eucgr.B03533' => 'egr', 'Eucgr.I02381' => 'egr', 'Eucgr.K02700' => 'egr', 'FAN02G0174' => 'fan', 'FAN02G3146' => 'fan', 'FAN04G1672' => 'fan', 'FAN04G2273' => 'fan', 'FAN05G2791' => 'fan', 'FAN05G4035' => 'fan', 'FAN07G0834' => 'fan', 'FAN08G1198' => 'fan', 'FAN09G4182' => 'fan', 'FAN12G0496' => 'fan', 'FAN13G1027' => 'fan', 'FAN13G2951' => 'fan', 'FAN14G0705' => 'fan', 'FAN14G0720' => 'fan', 'FAN17G0201' => 'fan', 'FAN17G2665' => 'fan', 'FAN18G1456' => 'fan', 'FAN18G1525' => 'fan', 'FAN18G3500' => 'fan', 'FAN28G2670' => 'fan', 'FvH4_1g12391' => 'fve', 'FvH4_4g23220' => 'fve', 'FvH4_5g08810' => 'fve', 'FvH4_5g28960' => 'fve', 'FvH4_6g42820' => 'fve', 'FvH4_6g51110' => 'fve', 'Glyma.02G051802' => 'gma', 'Glyma.04G185300' => 'gma', 'Glyma.05G202900' => 'gma', 'Glyma.08G010300' => 'gma', 'Glyma.16G131900' => 'gma', 'Glyma.17G087900' => 'gma', 'Gohir.A07G048600' => 'ghi', 'Gohir.A11G179000' => 'ghi', 'Gohir.A12G140900' => 'ghi', 'Gohir.A12G140950' => 'ghi', 'Gohir.A12G191700' => 'ghi', 'Gohir.A13G086300' => 'ghi', 'Gohir.D07G052900' => 'ghi', 'Gohir.D11G186600' => 'ghi', 'Gohir.D12G145575' => 'ghi', 'Gohir.D12G145650' => 'ghi', 'Gohir.D12G145725' => 'ghi', 'Gohir.D12G194050' => 'ghi', 'Gohir.D13G091800' => 'ghi', 'Gorai.001G055900' => 'gra', 'Gorai.007G198400' => 'gra', 'Gorai.008G157000' => 'gra', 'Gorai.008G157100' => 'gra', 'Gorai.008G208700' => 'gra', 'Gorai.010G138700' => 'gra', 'GSVIVG01000977001' => 'vvi', 'GSVIVG01007708001' => 'vvi', 'GSVIVG01008587001' => 'vvi', 'GSVIVG01018849001' => 'vvi', 'GSVIVG01032432001' => 'vvi', 'HanXRQChr02g0034131' => 'han', 'HanXRQChr02g0035981' => 'han', 'HanXRQChr02g0035991' => 'han', 'HanXRQChr05g0155611' => 'han', 'HanXRQChr05g0155621' => 'han', 'HanXRQChr08g0236501' => 'han', 'HanXRQChr09g0261321' => 'han', 'HanXRQChr09g0272081' => 'han', 'HanXRQChr10g0310741' => 'han', 'HanXRQChr11g0325591' => 'han', 'HanXRQChr12g0385691' => 'han', 'HanXRQChr13g0387801' => 'han', 'HanXRQChr15g0463011' => 'han', 'Haze_03826' => 'cav', 'Haze_03827' => 'cav', 'Haze_07183' => 'cav', 'Haze_07537' => 'cav', 'Haze_07539' => 'cav', 'Haze_12461' => 'cav', 'Haze_16115' => 'cav', 'Haze_16808' => 'cav', 'Haze_18531' => 'cav', 'Hma1.2p1_0046F.1_g026700' => 'hma', 'Hma1.2p1_0046F.1_g026710' => 'hma', 'Hma1.2p1_0168F.1_g074340' => 'hma', 'Hma1.2p1_0266F.1_g107030' => 'hma', 'Hma1.2p1_0266F.1_g107060' => 'hma', 'Hma1.2p1_0275F.1_g110510' => 'hma', 'Hma1.2p1_0592F.1_g185490' => 'hma', 'Hma1.2p1_0592F.1_g185500' => 'hma', 'Hma1.2p1_0592F.1_g185510' => 'hma', 'Hma1.2p1_0592F.1_g185520' => 'hma', 'Hma1.2p1_0592F.1_g185530' => 'hma', 'Hma1.2p1_0818F.1_g223450' => 'hma', 'HPP92_009708' => 'vpl', 'HPP92_009793' => 'vpl', 'HPP92_009796' => 'vpl', 'HPP92_009797' => 'vpl', 'HPP92_014940' => 'vpl', 'HPP92_014988' => 'vpl', 'Hund02463' => 'sun', 'Hund02760' => 'sun', 'Hund05071' => 'sun', 'Hund10108' => 'sun', 'Hund11204' => 'sun', 'Hund14016' => 'sun', 'Hund16464' => 'sun', 'Lalb_Chr09g0333391' => 'lal', 'Lalb_Chr11g0070461' => 'lal', 'Lalb_Chr12g0201671' => 'lal', 'Lalb_Chr13g0297161' => 'lal', 'Lj1g0002823' => 'lja', 'Lj3C1074T6' => 'lonja', 'Lj4A212T28' => 'lonja', 'Lj4g0005516' => 'lja', 'Lj4g0013705' => 'lja', 'Lj4g0027865' => 'lja', 'Lj5C92G16' => 'lonja', 'Lj5C92T12' => 'lonja', 'Lj7C596T3' => 'lonja', 'Lj9A446G59' => 'lonja', 'Lj9A482G21' => 'lonja', 'Lsat_1_v5_gn_1_28261' => 'lsa', 'Lsat_1_v5_gn_1_28281' => 'lsa', 'Lsat_1_v5_gn_1_32721' => 'lsa', 'Lsat_1_v5_gn_4_151760' => 'lsa', 'Lsat_1_v5_gn_4_2120' => 'lsa', 'Lsat_1_v5_gn_4_75761' => 'lsa', 'Lsat_1_v5_gn_5_10920' => 'lsa', 'Manes.02G099900' => 'mes', 'Manes.11G096200' => 'mes', 'Manes.12G007200' => 'mes', 'Manes.14G048300' => 'mes', 'Manes.17G114700' => 'mes', 'Mapoly0002s0070' => 'mpo', 'Mapoly0029s0099' => 'mpo', 'MBI07_g24742_MAGBIO' => 'mbi', 'MBI10_g27988_MAGBIO' => 'mbi', 'MBI11_g13057_MAGBIO' => 'mbi', 'MD02G1137200' => 'mdo', 'MD06G1137200' => 'mdo', 'MD07G1122300' => 'mdo', 'MD09G1078200' => 'mdo', 'MD13G1123700' => 'mdo', 'MD14G1151900' => 'mdo', 'MD17G1030900' => 'mdo', 'MD17G1068200' => 'mdo', 'MD17G1068600' => 'mdo', 'Medtr3g077540' => 'mtr', 'Medtr4g105530' => 'mtr', 'Medtr8g076580' => 'mtr', 'Medtr8g076590' => 'mtr', 'Medtr8g096410' => 'mtr', 'MELO3C016411.2' => 'cme', 'MELO3C017780.2' => 'cme', 'MELO3C022560.2' => 'cme', 'MELO3C026187.2' => 'cme', 'MELO3C026286.2' => 'cme', 'MELO3C032854.2' => 'cme', 'Migut.H02495' => 'egut', 'Migut.I00561' => 'egut', 'Migut.K01015' => 'egut', 'Migut.K01016' => 'egut', 'Migut.L00743' => 'egut', 'Migut.L00744' => 'egut', 'Migut.L00746' => 'egut', 'Migut.L00798' => 'egut', 'Migut.L00799' => 'egut', 'Migut.N02096' => 'egut', 'MSTRG.11259' => 'ama', 'MSTRG.23142' => 'ama', 'MSTRG.2499' => 'ama', 'Nitab4.5_0000003g0730' => 'nta', 'Nitab4.5_0000137g0020' => 'nta', 'Nitab4.5_0000721g0210' => 'nta', 'Nitab4.5_0000723g0050' => 'nta', 'Nitab4.5_0000913g0070' => 'nta', 'Nitab4.5_0001332g0040' => 'nta', 'Nitab4.5_0001771g0050' => 'nta', 'Nitab4.5_0001918g0050' => 'nta', 'Nitab4.5_0002686g0030' => 'nta', 'Nitab4.5_0003156g0020' => 'nta', 'Nitab4.5_0003383g0040' => 'nta', 'Nitab4.5_0003918g0010' => 'nta', 'Nitab4.5_0006760g0010' => 'nta', 'Nn1g05981' => 'nnu', 'Nn1g06288' => 'nnu', 'Nn3g16371' => 'nnu', 'Nn3g16786' => 'nnu', 'Nn4g22232' => 'nnu', 'Oeu005144.1' => 'oeu', 'Oeu005145.1' => 'oeu', 'Oeu011348.1' => 'oeu', 'Oeu016415.1' => 'oeu', 'Oeu023501.1' => 'oeu', 'Oeu044473.1' => 'oeu', 'Oeu048892.2' => 'oeu', 'Os01g0549200' => 'osa', 'Os02g0469300' => 'osa', 'Os04g0311100' => 'osa', 'Os06g0474900' => 'osa', 'Os10g0181700' => 'osa', 'Os11g0454800' => 'osa', 'Peaxi162Scf00037g00714' => 'pax', 'Peaxi162Scf00084g01217' => 'pax', 'Peaxi162Scf00257g00217' => 'pax', 'Peaxi162Scf00516g00215' => 'pax', 'Peaxi162Scf00689g00123' => 'pax', 'PGR044G2719' => 'pgr', 'PGR083G1360' => 'pgr', 'PGR102G2849' => 'pgr', 'PGR119G2534' => 'pgr', 'PGSC0003DMG400003538' => 'stu', 'PGSC0003DMG400028138' => 'stu', 'PGSC0003DMG400031732' => 'stu', 'PGSC0003DMG400038165' => 'stu', 'Phvul.002G284600' => 'pvu', 'Phvul.003G258200' => 'pvu', 'Phvul.009G176500' => 'pvu', 'Potri.003G167201' => 'ptr', 'Potri.005G118400' => 'ptr', 'Potri.012G089000' => 'ptr', 'Potri.012G102800' => 'ptr', 'Potri.015G079400' => 'ptr', 'Potri.015G100900' => 'ptr', 'Pp3c14_9810' => 'ppa', 'Pp3c15_10450' => 'ppa', 'Pp3c20_19150' => 'ppa', 'Pp3c23_12740' => 'ppa', 'Pp3c23_6310' => 'ppa', 'Pp3c24_3720' => 'ppa', 'Pp3c27_2580' => 'ppa', 'Pp3c9_8990' => 'ppa', 'PRCOL_00002854' => 'pco', 'Prupe.1G221200' => 'ppe', 'Prupe.3G289000' => 'ppe', 'Prupe.5G147000' => 'ppe', 'Prupe.6G157300' => 'ppe', 'Prupe.7G163400' => 'ppe', 'Psat0s2177g0040' => 'psa', 'Psat3g174760' => 'psa', 'Psat3g192160' => 'psa', 'Psat4g058520' => 'psa', 'Psat4g096840' => 'psa', 'Psat7g037320' => 'psa', 'PSO017G1274' => 'pso', 'PSO017G5166' => 'pso', 'PSO063G4558' => 'pso', 'PSO170G4458' => 'pso', 'PSO170G5005' => 'pso', 'PSO210G6156' => 'pso', 'PSO210G6635' => 'pso', 'PSO210G7397' => 'pso', 'PSO210G7700' => 'pso', 'PSO455G0035' => 'pso', 'PSO455G0180' => 'pso', 'PSO478G4515' => 'pso', 'PSO832G1305' => 'pso', 'PSO832G3489' => 'pso', 'QL02p075247' => 'qlo', 'QL03p051148' => 'qlo', 'QL05p010313' => 'qlo', 'QL06p034627' => 'qlo', 'QL10p001889' => 'qlo', 'QL10p010846' => 'qlo', 'RcHm_v2.0_Chr1g0350621' => 'rch', 'RcHm_v2.0_Chr1g0350641' => 'rch', 'RcHm_v2.0_Chr2g0092891' => 'rch', 'RcHm_v2.0_Chr2g0100251' => 'rch', 'RcHm_v2.0_Chr2g0158661' => 'rch', 'RcHm_v2.0_Chr2g0172741' => 'rch', 'RcHm_v2.0_Chr4g0429571' => 'rch', 'RcHm_v2.0_Chr5g0042471' => 'rch', 'RcHm_v2.0_Chr7g0189451' => 'rch', 'Rhsim08G0052000' => 'rsi', 'Rhsim08G0174400' => 'rsi', 'Rhsim08G0193200' => 'rsi', 'Rhsim10G0214800' => 'rsi', 'Rhsim10G0214900' => 'rsi', 'Rhsim10G0215000' => 'rsi', 'Rhsim12G0022900' => 'rsi', 'Rhsim12G0177500' => 'rsi', 'Rhsim12G0177700' => 'rsi', 'Sabra03G0122600' => 'sbr', 'Sabra05G0097400' => 'sbr', 'Sabra12G0064100' => 'sbr', 'Sabra15G0121300' => 'sbr', 'SalBow2G0642' => 'sbo', 'SalBow5G2667' => 'sbo', 'SalBow5G4873' => 'sbo', 'SalBow8G2395' => 'sbo', 'Sc03g0003290' => 'sci', 'Sc10g0010130' => 'sci', 'Sc22g0003650' => 'sci', 'Sed0001603' => 'sed', 'Sed0004259' => 'sed', 'Sed0006789' => 'sed', 'Sed0011838' => 'sed', 'Sed0012964' => 'sed', 'Sed0016383' => 'sed', 'Sed0019010' => 'sed', 'Sed0020188' => 'sed', 'SEGI_04702' => 'sgi', 'SEGI_17231' => 'sgi', 'SEGI_18877' => 'sgi', 'SEGI_25196' => 'sgi', 'SEGI_25515' => 'sgi', 'SEGI_28445' => 'sgi', 'SEGI_37452' => 'sgi', 'SGA_v2.0_scaffold188G40336' => 'sas', 'SGA_v2.0_scaffold228G43247' => 'sas', 'SGA_v2.0_scaffold280G46853' => 'sas', 'SGA_v2.0_scaffold34G13808' => 'sas', 'SGA_v2.0_scaffold40G15576' => 'sas', 'SGA_v2.0_scaffold611G53188' => 'sas', 'SGA_v2.0_scaffold78G25461' => 'sas', 'SGA_v2.0_scaffold90G27888' => 'sas', 'SHI08601' => 'shi', 'SHI08606' => 'shi', 'SHI17117' => 'shi', 'SHI17119' => 'shi', 'SMO118G0201' => 'smo', 'SMO169G0247' => 'smo', 'SMO176G0006' => 'smo', 'SMO176G0015' => 'smo', 'SMO202G0006' => 'smo', 'SMO240G0050' => 'smo', 'SMO286G0009' => 'smo', 'SMO338G0033' => 'smo', 'SMO356G0533' => 'smo', 'SMO364G0382' => 'smo', 'SMO367G0166' => 'smo', 'SMO367G1098' => 'smo', 'Solyc01g009920.3' => 'sly', 'Solyc01g099300.3' => 'sly', 'Solyc02g084700.3' => 'sly', 'Solyc03g097520.3' => 'sly', 'Solyc06g071580.3' => 'sly', 'Solyc10g081760.3' => 'sly', 'Sopen01g005480' => 'spe', 'Sopen01g042850' => 'spe', 'Sopen02g029370' => 'spe', 'Sopen03g028280' => 'spe', 'Sopen06g027870' => 'spe', 'Sopen10g032270' => 'spe', 'Sp5g18180' => 'spa', 'Sp6g12880' => 'spa', 'Sp6g30850' => 'spa', 'Sp7g22960' => 'spa', 'Sp7g34010' => 'spa', 'SpUn1326_0010' => 'spa', 'TAR371G0242' => 'tar', 'TAR622G0638' => 'tar', 'TAR628G1548' => 'tar', 'TAR629G1079' => 'tar', 'TAR629G3413' => 'tar', 'THA.LOC104804249' => 'tha', 'THA.LOC104808315' => 'tha', 'THA.LOC104809238' => 'tha', 'THA.LOC104825484' => 'tha', 'Thecc.01G025500' => 'tca', 'Thecc.03G015800' => 'tca', 'Thecc.03G018000' => 'tca', 'Thecc.03G134800' => 'tca', 'Thecc.04G014700' => 'tca', 'Thhalv10006991m.g' => 'esa', 'Thhalv10012707m.g' => 'esa', 'Thhalv10015739m.g' => 'esa', 'Thhalv10024553m.g' => 'esa', 'Thhalv10024673m.g' => 'esa', 'Thhalv10029187m.g' => 'esa', 'TPR.G12971' => 'tpr', 'TPR.G29396' => 'tpr', 'TPR.G33376' => 'tpr', 'TPR.G35508' => 'tpr', 'TPR.G35516' => 'tpr', 'TPR.G37317' => 'tpr', 'TPR.G37389' => 'tpr', 'TPR.G37523' => 'tpr', 'TPR.G559' => 'tpr', 'TWI14G0070' => 'twi', 'TWI14G0729' => 'twi', 'TWI18G0596' => 'twi', 'TWI39G0780' => 'twi', 'TWI39G0850' => 'twi', 'TWI73G1052' => 'twi', 'unitig_52.g17485' => 'ugi', 'unitig_61.g26355' => 'ugi', 'vmacro01040' => 'vma', 'vmacro16731' => 'vma', 'vmacro18270' => 'vma', 'vmacro19142' => 'vma', 'vmacro19407' => 'vma', 'vmacro19408' => 'vma', 'vmacro21899' => 'vma', 'vmacro21900' => 'vma', 'vmacro21901' => 'vma', 'VMungo0251G0490' => 'vmu', 'VMungo0251G1748' => 'vmu', 'VMungo1309G0421' => 'vmu', 'Zm00001eb086500' => 'zma', 'Zm00001eb150680' => 'zma', 'Zm00001eb162330' => 'zma', 'Zm00001eb203130' => 'zma', 'Zm00001eb369480' => 'zma', 'Zm00001eb382340' => 'zma', 'Zm00001eb416360' => 'zma' ), 'gf_id' => 'HOM05D000902', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000902' ), 'data_identifier' => 'HOM05D000902', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000902', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '663', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02470' => 'bna', 'A01p16260' => 'bna', 'A02p01680' => 'bna', 'A03p16600' => 'bna', 'A03p55660' => 'bna', 'A03p64160' => 'bna', 'A03p64170' => 'bna', 'A08p31900' => 'bna', 'A09p59530' => 'bna', 'A10p08230' => 'bna', 'A10p25090' => 'bna', 'Aa31LG3G7100' => 'aar', 'Aa31LG3G7110' => 'aar', 'Aa31LG6G13160' => 'aar', 'Aa31LG7G10770' => 'aar', 'Aa31LG7G3830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2723' => 'aag', 'Actinidia08045' => 'ach', 'Actinidia08888' => 'ach', 'Actinidia18333' => 'ach', 'Actinidia19334' => 'ach', 'Actinidia25552' => 'ach', 'Actinidia26089' => 'ach', 'Actinidia30615' => 'ach', 'Actinidia30616' => 'ach', 'Actinidia33083' => 'ach', 'Actinidia35762' => 'ach', 'Ah.02g110620' => 'amhyb', 'Ah.11g046390' => 'amhyb', 'AL1G31670' => 'aly', 'AL6G23730' => 'aly', 'AL7G14740' => 'aly', 'AL7G14750' => 'aly', 'AL7G14760' => 'aly', 'AL7G28220' => 'aly', 'AL8G24940' => 'aly', 'Aqoxy3G01665' => 'aox', 'Aqoxy3G02853' => 'aox', 'Aqoxy5G01513' => 'aox', 'Aqoxy5G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8SKA4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ75LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKDA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0LJZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7REX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZP4YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWX7I5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2QKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS0L9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPCD8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q161UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC7XCF' => 'arhy', 'AT1G19100' => 'ath', 'AT4G24970' => 'ath', 'AT4G36270' => 'ath', 'AT4G36280' => 'ath', 'AT4G36290' => 'ath', 'AT5G13130' => 'ath', 'AT5G50780' => 'ath', 'ATR0582G266' => 'atr', 'ATR0661G195' => 'atr', 'ATR1152G031' => 'atr', 'Atru.chr11.2382' => 'acertr', 'Atru.chr12.2337' => 'acertr', 'Atru.chr3.744' => 'acertr', 'Atru.chr6.1870' => 'acertr', 'Atru.chr9.2515' => 'acertr', 'AUR62004120' => 'cqu', 'AUR62005667' => 'cqu', 'AUR62007634' => 'cqu', 'AUR62008186' => 'cqu', 'AUR62008187' => 'cqu', 'AUR62008188' => 'cqu', 'AUR62027954' => 'cqu', 'AUR62028766' => 'cqu', 'AUR62028767' => 'cqu', 'AUR62028768' => 'cqu', 'AUR62028886' => 'cqu', 'AUR62029563' => 'cqu', 'AUR62038832' => 'cqu', 'BcaB01g04149' => 'bca', 'BcaB03g12940' => 'bca', 'BcaB03g13090' => 'bca', 'BcaB03g14466' => 'bca', 'BcaB05g24035' => 'bca', 'BcaC01g06050' => 'bca', 'BcaC04g19148' => 'bca', 'BcaC04g20761' => 'bca', 'BcaC06g32845' => 'bca', 'BcaC07g41274' => 'bca', 'BcaC09g50827' => 'bca', 'BcaNung00741' => 'bca', 'BcaNung00742' => 'bca', 'BcaNung01859' => 'bca', 'BcaNung03985' => 'bca', 'BcaNung03989' => 'bca', 'BcaNung05661' => 'bca', 'BolC1t00257H' => 'bol', 'BolC1t01956H' => 'bol', 'BolC2t06534H' => 'bol', 'BolC3t14334H' => 'bol', 'BolC5t30451H' => 'bol', 'BolC7t45880H' => 'bol', 'BolC7t46586H' => 'bol', 'BolC8t49301H' => 'bol', 'BolC8t51837H' => 'bol', 'BolC9t56822H' => 'bol', 'BolC9t59235H' => 'bol', 'BraA01t00234Z' => 'bra', 'BraA01t01563Z' => 'bra', 'BraA02t05147Z' => 'bra', 'BraA03t10947Z' => 'bra', 'BraA03t14633Z' => 'bra', 'BraA08t35112Z' => 'bra', 'BraA09t41330Z' => 'bra', 'BraA10t44570Z' => 'bra', 'C01p02670' => 'bna', 'C01p20260' => 'bna', 'C02p05890' => 'bna', 'C03p19530' => 'bna', 'C05p17470' => 'bna', 'C07p53900' => 'bna', 'C07p61630' => 'bna', 'C08p16800' => 'bna', 'C08p42810' => 'bna', 'C09p39480' => 'bna', 'C09p63980' => 'bna', 'CAN.G1001.7' => 'can', 'CAN.G1034.55' => 'can', 'CAN.G143.7' => 'can', 'CAN.G3340.1' => 'can', 'CAN.G358.19' => 'can', 'CAN.G373.2' => 'can', 'CAN.G674.16' => 'can', 'CAN.G674.17' => 'can', 'CAN.G674.18' => 'can', 'CAN.G732.2' => 'can', 'CAN.G732.3' => 'can', 'CAN.G993.39' => 'can', 'CANSAT01G2052' => 'cansat', 'CANSAT80G0070' => 'cansat', 'CANSAT80G0483' => 'cansat', 'CANSAT80G0625' => 'cansat', 'CARHR019690' => 'chi', 'CARHR080280' => 'chi', 'CARHR152750' => 'chi', 'CARHR152760' => 'chi', 'CARHR152770' => 'chi', 'CARHR200340' => 'chi', 'CARHR232370' => 'chi', 'CARHR244670' => 'chi', 'CARHR244680' => 'chi', 'CARHR257520' => 'chi', 'Carub.0001s1872' => 'cru', 'Carub.0006s1130' => 'cru', 'Carub.0007s0396' => 'cru', 'Carub.0007s0397' => 'cru', 'Carub.0007s1608' => 'cru', 'Carub.0008s1068' => 'cru', 'Carub.0008s1077' => 'cru', 'Ca_16158_v3' => 'car', 'Ca_17571_v3' => 'car', 'Ca_21936_v3' => 'car', 'Ca_22350_v3' => 'car', 'CBR_g22445' => 'cbr', 'CBR_g26290' => 'cbr', 'Cc04_g09610' => 'ccan', 'Cc04_g12280' => 'ccan', 'Cc07_g10230' => 'ccan', 'CDE02G0093' => 'cde', 'CDE02G0701' => 'cde', 'CDE04G1050' => 'cde', 'CDE05G1833' => 'cde', 'CDE05G3058' => 'cde', 'CDE05G3380' => 'cde', 'CDE06G0536' => 'cde', 'Cfa006923' => 'cfa', 'Cfa009402' => 'cfa', 'Cfa018751' => 'cfa', 'Cfa019164' => 'cfa', 'Cfa022935' => 'cfa', 'Ciclev10019081m.g' => 'ccl', 'Ciclev10025076m.g' => 'ccl', 'Ciclev10030712m.g' => 'ccl', 'Ciclev10033760m.g' => 'ccl', 'CiPaw.05G105600' => 'cil', 'CiPaw.08G136700' => 'cil', 'CiPaw.11G003900' => 'cil', 'CiPaw.11G023700' => 'cil', 'CiPaw.12G003700' => 'cil', 'ClCG06G017100' => 'cla', 'ClCG06G018110' => 'cla', 'ClCG07G008800' => 'cla', 'ClCG07G015330' => 'cla', 'COL.COLO4_13698' => 'col', 'COL.COLO4_16659' => 'col', 'COL.COLO4_21986' => 'col', 'COL.COLO4_24049' => 'col', 'COL.COLO4_29061' => 'col', 'COL.COLO4_29075' => 'col', 'COL.COLO4_30094' => 'col', 'Cpa.g.c33689' => 'cpa', 'Cpa.g.sc108.39' => 'cpa', 'Cpa.g.sc108.41' => 'cpa', 'Cpa.g.sc1163.1' => 'cpa', 'Cpa.g.sc4.155' => 'cpa', 'Cpa.g.sc6.194' => 'cpa', 'CsaV3_1G000340' => 'csa', 'CsaV3_1G001400' => 'csa', 'CsaV3_4G002220' => 'csa', 'CsaV3_4G005370' => 'csa', 'CSS0007487' => 'camsi', 'CSS0008066' => 'camsi', 'CSS0009120' => 'camsi', 'CSS0015512' => 'camsi', 'CSS0022409' => 'camsi', 'CSS0025358' => 'camsi', 'CSS0044547' => 'camsi', 'DCAR_013057' => 'dca', 'DCAR_015058' => 'dca', 'DCAR_016027' => 'dca', 'DCAR_017327' => 'dca', 'DCAR_020743' => 'dca', 'DCAR_026157' => 'dca', 'DCAR_032339' => 'dca', 'DCAR_032340' => 'dca', 'Dinv11200' => 'din', 'Dinv11201' => 'din', 'Dinv20631' => 'din', 'Dinv23182' => 'din', 'Dinv33466' => 'din', 'Dinv33583' => 'din', 'Dinv38565' => 'din', 'Duzib068G0200' => 'dzi', 'Duzib147G0132' => 'dzi', 'Duzib147G0635' => 'dzi', 'Duzib205G1670' => 'dzi', 'Duzib251G0606' => 'dzi', 'ECA232G3336' => 'eca', 'ECA232G3763' => 'eca', 'ECA232G4845' => 'eca', 'ECA234G1607' => 'eca', 'ECA246G0932' => 'eca', 'ECA247G0781' => 'eca', 'ECA247G1932' => 'eca', 'ECA247G2079' => 'eca', 'ECA247G3338' => 'eca', 'ECA247G4115' => 'eca', 'EL10Ac3g06552' => 'bvu', 'EL10Ac5g10721' => 'bvu', 'EL10Ac5g10722' => 'bvu', 'EL10Ac5g10723' => 'bvu', 'EL10Ac5g11361' => 'bvu', 'EL10Ac6g13553' => 'bvu', 'EL10As8g23872' => 'bvu', 'Eucgr.B00250' => 'egr', 'Eucgr.B00251' => 'egr', 'Eucgr.B03533' => 'egr', 'Eucgr.I02381' => 'egr', 'Eucgr.K02700' => 'egr', 'FAN02G0174' => 'fan', 'FAN02G3146' => 'fan', 'FAN04G1672' => 'fan', 'FAN04G2273' => 'fan', 'FAN05G2791' => 'fan', 'FAN05G4035' => 'fan', 'FAN07G0834' => 'fan', 'FAN08G1198' => 'fan', 'FAN09G4182' => 'fan', 'FAN12G0496' => 'fan', 'FAN13G1027' => 'fan', 'FAN13G2951' => 'fan', 'FAN14G0705' => 'fan', 'FAN14G0720' => 'fan', 'FAN17G0201' => 'fan', 'FAN17G2665' => 'fan', 'FAN18G1456' => 'fan', 'FAN18G1525' => 'fan', 'FAN18G3500' => 'fan', 'FAN28G2670' => 'fan', 'FvH4_1g12391' => 'fve', 'FvH4_4g23220' => 'fve', 'FvH4_5g08810' => 'fve', 'FvH4_5g28960' => 'fve', 'FvH4_6g42820' => 'fve', 'FvH4_6g51110' => 'fve', 'Glyma.02G051802' => 'gma', 'Glyma.04G185300' => 'gma', 'Glyma.05G202900' => 'gma', 'Glyma.08G010300' => 'gma', 'Glyma.16G131900' => 'gma', 'Glyma.17G087900' => 'gma', 'Gohir.A07G048600' => 'ghi', 'Gohir.A11G179000' => 'ghi', 'Gohir.A12G140900' => 'ghi', 'Gohir.A12G140950' => 'ghi', 'Gohir.A12G191700' => 'ghi', 'Gohir.A13G086300' => 'ghi', 'Gohir.D07G052900' => 'ghi', 'Gohir.D11G186600' => 'ghi', 'Gohir.D12G145575' => 'ghi', 'Gohir.D12G145650' => 'ghi', 'Gohir.D12G145725' => 'ghi', 'Gohir.D12G194050' => 'ghi', 'Gohir.D13G091800' => 'ghi', 'Gorai.001G055900' => 'gra', 'Gorai.007G198400' => 'gra', 'Gorai.008G157000' => 'gra', 'Gorai.008G157100' => 'gra', 'Gorai.008G208700' => 'gra', 'Gorai.010G138700' => 'gra', 'GSVIVG01000977001' => 'vvi', 'GSVIVG01007708001' => 'vvi', 'GSVIVG01008587001' => 'vvi', 'GSVIVG01018849001' => 'vvi', 'GSVIVG01032432001' => 'vvi', 'HanXRQChr02g0034131' => 'han', 'HanXRQChr02g0035981' => 'han', 'HanXRQChr02g0035991' => 'han', 'HanXRQChr05g0155611' => 'han', 'HanXRQChr05g0155621' => 'han', 'HanXRQChr08g0236501' => 'han', 'HanXRQChr09g0261321' => 'han', 'HanXRQChr09g0272081' => 'han', 'HanXRQChr10g0310741' => 'han', 'HanXRQChr11g0325591' => 'han', 'HanXRQChr12g0385691' => 'han', 'HanXRQChr13g0387801' => 'han', 'HanXRQChr15g0463011' => 'han', 'Haze_03826' => 'cav', 'Haze_03827' => 'cav', 'Haze_07183' => 'cav', 'Haze_07537' => 'cav', 'Haze_07539' => 'cav', 'Haze_12461' => 'cav', 'Haze_16115' => 'cav', 'Haze_16808' => 'cav', 'Haze_18531' => 'cav', 'Hma1.2p1_0046F.1_g026700' => 'hma', 'Hma1.2p1_0046F.1_g026710' => 'hma', 'Hma1.2p1_0168F.1_g074340' => 'hma', 'Hma1.2p1_0266F.1_g107030' => 'hma', 'Hma1.2p1_0266F.1_g107060' => 'hma', 'Hma1.2p1_0275F.1_g110510' => 'hma', 'Hma1.2p1_0592F.1_g185490' => 'hma', 'Hma1.2p1_0592F.1_g185500' => 'hma', 'Hma1.2p1_0592F.1_g185510' => 'hma', 'Hma1.2p1_0592F.1_g185520' => 'hma', 'Hma1.2p1_0592F.1_g185530' => 'hma', 'Hma1.2p1_0818F.1_g223450' => 'hma', 'HPP92_009708' => 'vpl', 'HPP92_009793' => 'vpl', 'HPP92_009796' => 'vpl', 'HPP92_009797' => 'vpl', 'HPP92_014940' => 'vpl', 'HPP92_014988' => 'vpl', 'Hund02463' => 'sun', 'Hund02760' => 'sun', 'Hund05071' => 'sun', 'Hund10108' => 'sun', 'Hund11204' => 'sun', 'Hund14016' => 'sun', 'Hund16464' => 'sun', 'Lalb_Chr09g0333391' => 'lal', 'Lalb_Chr11g0070461' => 'lal', 'Lalb_Chr12g0201671' => 'lal', 'Lalb_Chr13g0297161' => 'lal', 'Lj1g0002823' => 'lja', 'Lj3C1074T6' => 'lonja', 'Lj4A212T28' => 'lonja', 'Lj4g0005516' => 'lja', 'Lj4g0013705' => 'lja', 'Lj4g0027865' => 'lja', 'Lj5C92G16' => 'lonja', 'Lj5C92T12' => 'lonja', 'Lj7C596T3' => 'lonja', 'Lj9A446G59' => 'lonja', 'Lj9A482G21' => 'lonja', 'Lsat_1_v5_gn_1_28261' => 'lsa', 'Lsat_1_v5_gn_1_28281' => 'lsa', 'Lsat_1_v5_gn_1_32721' => 'lsa', 'Lsat_1_v5_gn_4_151760' => 'lsa', 'Lsat_1_v5_gn_4_2120' => 'lsa', 'Lsat_1_v5_gn_4_75761' => 'lsa', 'Lsat_1_v5_gn_5_10920' => 'lsa', 'Manes.02G099900' => 'mes', 'Manes.11G096200' => 'mes', 'Manes.12G007200' => 'mes', 'Manes.14G048300' => 'mes', 'Manes.17G114700' => 'mes', 'Mapoly0002s0070' => 'mpo', 'Mapoly0029s0099' => 'mpo', 'MBI07_g24742_MAGBIO' => 'mbi', 'MBI10_g27988_MAGBIO' => 'mbi', 'MBI11_g13057_MAGBIO' => 'mbi', 'MD02G1137200' => 'mdo', 'MD06G1137200' => 'mdo', 'MD07G1122300' => 'mdo', 'MD09G1078200' => 'mdo', 'MD13G1123700' => 'mdo', 'MD14G1151900' => 'mdo', 'MD17G1030900' => 'mdo', 'MD17G1068200' => 'mdo', 'MD17G1068600' => 'mdo', 'Medtr3g077540' => 'mtr', 'Medtr4g105530' => 'mtr', 'Medtr8g076580' => 'mtr', 'Medtr8g076590' => 'mtr', 'Medtr8g096410' => 'mtr', 'MELO3C016411.2' => 'cme', 'MELO3C017780.2' => 'cme', 'MELO3C022560.2' => 'cme', 'MELO3C026187.2' => 'cme', 'MELO3C026286.2' => 'cme', 'MELO3C032854.2' => 'cme', 'Migut.H02495' => 'egut', 'Migut.I00561' => 'egut', 'Migut.K01015' => 'egut', 'Migut.K01016' => 'egut', 'Migut.L00743' => 'egut', 'Migut.L00744' => 'egut', 'Migut.L00746' => 'egut', 'Migut.L00798' => 'egut', 'Migut.L00799' => 'egut', 'Migut.N02096' => 'egut', 'MSTRG.11259' => 'ama', 'MSTRG.23142' => 'ama', 'MSTRG.2499' => 'ama', 'Nitab4.5_0000003g0730' => 'nta', 'Nitab4.5_0000137g0020' => 'nta', 'Nitab4.5_0000721g0210' => 'nta', 'Nitab4.5_0000723g0050' => 'nta', 'Nitab4.5_0000913g0070' => 'nta', 'Nitab4.5_0001332g0040' => 'nta', 'Nitab4.5_0001771g0050' => 'nta', 'Nitab4.5_0001918g0050' => 'nta', 'Nitab4.5_0002686g0030' => 'nta', 'Nitab4.5_0003156g0020' => 'nta', 'Nitab4.5_0003383g0040' => 'nta', 'Nitab4.5_0003918g0010' => 'nta', 'Nitab4.5_0006760g0010' => 'nta', 'Nn1g05981' => 'nnu', 'Nn1g06288' => 'nnu', 'Nn3g16371' => 'nnu', 'Nn3g16786' => 'nnu', 'Nn4g22232' => 'nnu', 'Oeu005144.1' => 'oeu', 'Oeu005145.1' => 'oeu', 'Oeu011348.1' => 'oeu', 'Oeu016415.1' => 'oeu', 'Oeu023501.1' => 'oeu', 'Oeu044473.1' => 'oeu', 'Oeu048892.2' => 'oeu', 'Os01g0549200' => 'osa', 'Os02g0469300' => 'osa', 'Os04g0311100' => 'osa', 'Os06g0474900' => 'osa', 'Os10g0181700' => 'osa', 'Os11g0454800' => 'osa', 'Peaxi162Scf00037g00714' => 'pax', 'Peaxi162Scf00084g01217' => 'pax', 'Peaxi162Scf00257g00217' => 'pax', 'Peaxi162Scf00516g00215' => 'pax', 'Peaxi162Scf00689g00123' => 'pax', 'PGR044G2719' => 'pgr', 'PGR083G1360' => 'pgr', 'PGR102G2849' => 'pgr', 'PGR119G2534' => 'pgr', 'PGSC0003DMG400003538' => 'stu', 'PGSC0003DMG400028138' => 'stu', 'PGSC0003DMG400031732' => 'stu', 'PGSC0003DMG400038165' => 'stu', 'Phvul.002G284600' => 'pvu', 'Phvul.003G258200' => 'pvu', 'Phvul.009G176500' => 'pvu', 'Potri.003G167201' => 'ptr', 'Potri.005G118400' => 'ptr', 'Potri.012G089000' => 'ptr', 'Potri.012G102800' => 'ptr', 'Potri.015G079400' => 'ptr', 'Potri.015G100900' => 'ptr', 'Pp3c14_9810' => 'ppa', 'Pp3c15_10450' => 'ppa', 'Pp3c20_19150' => 'ppa', 'Pp3c23_12740' => 'ppa', 'Pp3c23_6310' => 'ppa', 'Pp3c24_3720' => 'ppa', 'Pp3c27_2580' => 'ppa', 'Pp3c9_8990' => 'ppa', 'PRCOL_00002854' => 'pco', 'Prupe.1G221200' => 'ppe', 'Prupe.3G289000' => 'ppe', 'Prupe.5G147000' => 'ppe', 'Prupe.6G157300' => 'ppe', 'Prupe.7G163400' => 'ppe', 'Psat0s2177g0040' => 'psa', 'Psat3g174760' => 'psa', 'Psat3g192160' => 'psa', 'Psat4g058520' => 'psa', 'Psat4g096840' => 'psa', 'Psat7g037320' => 'psa', 'PSO017G1274' => 'pso', 'PSO017G5166' => 'pso', 'PSO063G4558' => 'pso', 'PSO170G4458' => 'pso', 'PSO170G5005' => 'pso', 'PSO210G6156' => 'pso', 'PSO210G6635' => 'pso', 'PSO210G7397' => 'pso', 'PSO210G7700' => 'pso', 'PSO455G0035' => 'pso', 'PSO455G0180' => 'pso', 'PSO478G4515' => 'pso', 'PSO832G1305' => 'pso', 'PSO832G3489' => 'pso', 'QL02p075247' => 'qlo', 'QL03p051148' => 'qlo', 'QL05p010313' => 'qlo', 'QL06p034627' => 'qlo', 'QL10p001889' => 'qlo', 'QL10p010846' => 'qlo', 'RcHm_v2.0_Chr1g0350621' => 'rch', 'RcHm_v2.0_Chr1g0350641' => 'rch', 'RcHm_v2.0_Chr2g0092891' => 'rch', 'RcHm_v2.0_Chr2g0100251' => 'rch', 'RcHm_v2.0_Chr2g0158661' => 'rch', 'RcHm_v2.0_Chr2g0172741' => 'rch', 'RcHm_v2.0_Chr4g0429571' => 'rch', 'RcHm_v2.0_Chr5g0042471' => 'rch', 'RcHm_v2.0_Chr7g0189451' => 'rch', 'Rhsim08G0052000' => 'rsi', 'Rhsim08G0174400' => 'rsi', 'Rhsim08G0193200' => 'rsi', 'Rhsim10G0214800' => 'rsi', 'Rhsim10G0214900' => 'rsi', 'Rhsim10G0215000' => 'rsi', 'Rhsim12G0022900' => 'rsi', 'Rhsim12G0177500' => 'rsi', 'Rhsim12G0177700' => 'rsi', 'Sabra03G0122600' => 'sbr', 'Sabra05G0097400' => 'sbr', 'Sabra12G0064100' => 'sbr', 'Sabra15G0121300' => 'sbr', 'SalBow2G0642' => 'sbo', 'SalBow5G2667' => 'sbo', 'SalBow5G4873' => 'sbo', 'SalBow8G2395' => 'sbo', 'Sc03g0003290' => 'sci', 'Sc10g0010130' => 'sci', 'Sc22g0003650' => 'sci', 'Sed0001603' => 'sed', 'Sed0004259' => 'sed', 'Sed0006789' => 'sed', 'Sed0011838' => 'sed', 'Sed0012964' => 'sed', 'Sed0016383' => 'sed', 'Sed0019010' => 'sed', 'Sed0020188' => 'sed', 'SEGI_04702' => 'sgi', 'SEGI_17231' => 'sgi', 'SEGI_18877' => 'sgi', 'SEGI_25196' => 'sgi', 'SEGI_25515' => 'sgi', 'SEGI_28445' => 'sgi', 'SEGI_37452' => 'sgi', 'SGA_v2.0_scaffold188G40336' => 'sas', 'SGA_v2.0_scaffold228G43247' => 'sas', 'SGA_v2.0_scaffold280G46853' => 'sas', 'SGA_v2.0_scaffold34G13808' => 'sas', 'SGA_v2.0_scaffold40G15576' => 'sas', 'SGA_v2.0_scaffold611G53188' => 'sas', 'SGA_v2.0_scaffold78G25461' => 'sas', 'SGA_v2.0_scaffold90G27888' => 'sas', 'SHI08601' => 'shi', 'SHI08606' => 'shi', 'SHI17117' => 'shi', 'SHI17119' => 'shi', 'SMO118G0201' => 'smo', 'SMO169G0247' => 'smo', 'SMO176G0006' => 'smo', 'SMO176G0015' => 'smo', 'SMO202G0006' => 'smo', 'SMO240G0050' => 'smo', 'SMO286G0009' => 'smo', 'SMO338G0033' => 'smo', 'SMO356G0533' => 'smo', 'SMO364G0382' => 'smo', 'SMO367G0166' => 'smo', 'SMO367G1098' => 'smo', 'Solyc01g009920.3' => 'sly', 'Solyc01g099300.3' => 'sly', 'Solyc02g084700.3' => 'sly', 'Solyc03g097520.3' => 'sly', 'Solyc06g071580.3' => 'sly', 'Solyc10g081760.3' => 'sly', 'Sopen01g005480' => 'spe', 'Sopen01g042850' => 'spe', 'Sopen02g029370' => 'spe', 'Sopen03g028280' => 'spe', 'Sopen06g027870' => 'spe', 'Sopen10g032270' => 'spe', 'Sp5g18180' => 'spa', 'Sp6g12880' => 'spa', 'Sp6g30850' => 'spa', 'Sp7g22960' => 'spa', 'Sp7g34010' => 'spa', 'SpUn1326_0010' => 'spa', 'TAR371G0242' => 'tar', 'TAR622G0638' => 'tar', 'TAR628G1548' => 'tar', 'TAR629G1079' => 'tar', 'TAR629G3413' => 'tar', 'THA.LOC104804249' => 'tha', 'THA.LOC104808315' => 'tha', 'THA.LOC104809238' => 'tha', 'THA.LOC104825484' => 'tha', 'Thecc.01G025500' => 'tca', 'Thecc.03G015800' => 'tca', 'Thecc.03G018000' => 'tca', 'Thecc.03G134800' => 'tca', 'Thecc.04G014700' => 'tca', 'Thhalv10006991m.g' => 'esa', 'Thhalv10012707m.g' => 'esa', 'Thhalv10015739m.g' => 'esa', 'Thhalv10024553m.g' => 'esa', 'Thhalv10024673m.g' => 'esa', 'Thhalv10029187m.g' => 'esa', 'TPR.G12971' => 'tpr', 'TPR.G29396' => 'tpr', 'TPR.G33376' => 'tpr', 'TPR.G35508' => 'tpr', 'TPR.G35516' => 'tpr', 'TPR.G37317' => 'tpr', 'TPR.G37389' => 'tpr', 'TPR.G37523' => 'tpr', 'TPR.G559' => 'tpr', 'TWI14G0070' => 'twi', 'TWI14G0729' => 'twi', 'TWI18G0596' => 'twi', 'TWI39G0780' => 'twi', 'TWI39G0850' => 'twi', 'TWI73G1052' => 'twi', 'unitig_52.g17485' => 'ugi', 'unitig_61.g26355' => 'ugi', 'vmacro01040' => 'vma', 'vmacro16731' => 'vma', 'vmacro18270' => 'vma', 'vmacro19142' => 'vma', 'vmacro19407' => 'vma', 'vmacro19408' => 'vma', 'vmacro21899' => 'vma', 'vmacro21900' => 'vma', 'vmacro21901' => 'vma', 'VMungo0251G0490' => 'vmu', 'VMungo0251G1748' => 'vmu', 'VMungo1309G0421' => 'vmu', 'Zm00001eb086500' => 'zma', 'Zm00001eb150680' => 'zma', 'Zm00001eb162330' => 'zma', 'Zm00001eb203130' => 'zma', 'Zm00001eb369480' => 'zma', 'Zm00001eb382340' => 'zma', 'Zm00001eb416360' => 'zma' ) $gf_id = 'HOM05D000902' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000902' ) $data_identifier = 'HOM05D000902' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 13, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 10, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 6, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 9, 'hma' => (int) 12, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 4, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 6, 'ppa' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 6, 'rch' => (int) 9, 'rsi' => (int) 9, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 12, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 3, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416360' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000902', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '663', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02470' => 'bna', 'A01p16260' => 'bna', 'A02p01680' => 'bna', 'A03p16600' => 'bna', 'A03p55660' => 'bna', 'A03p64160' => 'bna', 'A03p64170' => 'bna', 'A08p31900' => 'bna', 'A09p59530' => 'bna', 'A10p08230' => 'bna', 'A10p25090' => 'bna', 'Aa31LG3G7100' => 'aar', 'Aa31LG3G7110' => 'aar', 'Aa31LG6G13160' => 'aar', 'Aa31LG7G10770' => 'aar', 'Aa31LG7G3830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2723' => 'aag', 'Actinidia08045' => 'ach', 'Actinidia08888' => 'ach', 'Actinidia18333' => 'ach', 'Actinidia19334' => 'ach', 'Actinidia25552' => 'ach', 'Actinidia26089' => 'ach', 'Actinidia30615' => 'ach', 'Actinidia30616' => 'ach', 'Actinidia33083' => 'ach', 'Actinidia35762' => 'ach', 'Ah.02g110620' => 'amhyb', 'Ah.11g046390' => 'amhyb', 'AL1G31670' => 'aly', 'AL6G23730' => 'aly', 'AL7G14740' => 'aly', 'AL7G14750' => 'aly', 'AL7G14760' => 'aly', 'AL7G28220' => 'aly', 'AL8G24940' => 'aly', 'Aqoxy3G01665' => 'aox', 'Aqoxy3G02853' => 'aox', 'Aqoxy5G01513' => 'aox', 'Aqoxy5G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8SKA4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ75LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKDA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0LJZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7REX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZP4YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWX7I5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2QKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS0L9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPCD8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q161UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC7XCF' => 'arhy', 'AT1G19100' => 'ath', 'AT4G24970' => 'ath', 'AT4G36270' => 'ath', 'AT4G36280' => 'ath', 'AT4G36290' => 'ath', 'AT5G13130' => 'ath', 'AT5G50780' => 'ath', 'ATR0582G266' => 'atr', 'ATR0661G195' => 'atr', 'ATR1152G031' => 'atr', 'Atru.chr11.2382' => 'acertr', 'Atru.chr12.2337' => 'acertr', 'Atru.chr3.744' => 'acertr', 'Atru.chr6.1870' => 'acertr', 'Atru.chr9.2515' => 'acertr', 'AUR62004120' => 'cqu', 'AUR62005667' => 'cqu', 'AUR62007634' => 'cqu', 'AUR62008186' => 'cqu', 'AUR62008187' => 'cqu', 'AUR62008188' => 'cqu', 'AUR62027954' => 'cqu', 'AUR62028766' => 'cqu', 'AUR62028767' => 'cqu', 'AUR62028768' => 'cqu', 'AUR62028886' => 'cqu', 'AUR62029563' => 'cqu', 'AUR62038832' => 'cqu', 'BcaB01g04149' => 'bca', 'BcaB03g12940' => 'bca', 'BcaB03g13090' => 'bca', 'BcaB03g14466' => 'bca', 'BcaB05g24035' => 'bca', 'BcaC01g06050' => 'bca', 'BcaC04g19148' => 'bca', 'BcaC04g20761' => 'bca', 'BcaC06g32845' => 'bca', 'BcaC07g41274' => 'bca', 'BcaC09g50827' => 'bca', 'BcaNung00741' => 'bca', 'BcaNung00742' => 'bca', 'BcaNung01859' => 'bca', 'BcaNung03985' => 'bca', 'BcaNung03989' => 'bca', 'BcaNung05661' => 'bca', 'BolC1t00257H' => 'bol', 'BolC1t01956H' => 'bol', 'BolC2t06534H' => 'bol', 'BolC3t14334H' => 'bol', 'BolC5t30451H' => 'bol', 'BolC7t45880H' => 'bol', 'BolC7t46586H' => 'bol', 'BolC8t49301H' => 'bol', 'BolC8t51837H' => 'bol', 'BolC9t56822H' => 'bol', 'BolC9t59235H' => 'bol', 'BraA01t00234Z' => 'bra', 'BraA01t01563Z' => 'bra', 'BraA02t05147Z' => 'bra', 'BraA03t10947Z' => 'bra', 'BraA03t14633Z' => 'bra', 'BraA08t35112Z' => 'bra', 'BraA09t41330Z' => 'bra', 'BraA10t44570Z' => 'bra', 'C01p02670' => 'bna', 'C01p20260' => 'bna', 'C02p05890' => 'bna', 'C03p19530' => 'bna', 'C05p17470' => 'bna', 'C07p53900' => 'bna', 'C07p61630' => 'bna', 'C08p16800' => 'bna', 'C08p42810' => 'bna', 'C09p39480' => 'bna', 'C09p63980' => 'bna', 'CAN.G1001.7' => 'can', 'CAN.G1034.55' => 'can', 'CAN.G143.7' => 'can', 'CAN.G3340.1' => 'can', 'CAN.G358.19' => 'can', 'CAN.G373.2' => 'can', 'CAN.G674.16' => 'can', 'CAN.G674.17' => 'can', 'CAN.G674.18' => 'can', 'CAN.G732.2' => 'can', 'CAN.G732.3' => 'can', 'CAN.G993.39' => 'can', 'CANSAT01G2052' => 'cansat', 'CANSAT80G0070' => 'cansat', 'CANSAT80G0483' => 'cansat', 'CANSAT80G0625' => 'cansat', 'CARHR019690' => 'chi', 'CARHR080280' => 'chi', 'CARHR152750' => 'chi', 'CARHR152760' => 'chi', 'CARHR152770' => 'chi', 'CARHR200340' => 'chi', 'CARHR232370' => 'chi', 'CARHR244670' => 'chi', 'CARHR244680' => 'chi', 'CARHR257520' => 'chi', 'Carub.0001s1872' => 'cru', 'Carub.0006s1130' => 'cru', 'Carub.0007s0396' => 'cru', 'Carub.0007s0397' => 'cru', 'Carub.0007s1608' => 'cru', 'Carub.0008s1068' => 'cru', 'Carub.0008s1077' => 'cru', 'Ca_16158_v3' => 'car', 'Ca_17571_v3' => 'car', 'Ca_21936_v3' => 'car', 'Ca_22350_v3' => 'car', 'CBR_g22445' => 'cbr', 'CBR_g26290' => 'cbr', 'Cc04_g09610' => 'ccan', 'Cc04_g12280' => 'ccan', 'Cc07_g10230' => 'ccan', 'CDE02G0093' => 'cde', 'CDE02G0701' => 'cde', 'CDE04G1050' => 'cde', 'CDE05G1833' => 'cde', 'CDE05G3058' => 'cde', 'CDE05G3380' => 'cde', 'CDE06G0536' => 'cde', 'Cfa006923' => 'cfa', 'Cfa009402' => 'cfa', 'Cfa018751' => 'cfa', 'Cfa019164' => 'cfa', 'Cfa022935' => 'cfa', 'Ciclev10019081m.g' => 'ccl', 'Ciclev10025076m.g' => 'ccl', 'Ciclev10030712m.g' => 'ccl', 'Ciclev10033760m.g' => 'ccl', 'CiPaw.05G105600' => 'cil', 'CiPaw.08G136700' => 'cil', 'CiPaw.11G003900' => 'cil', 'CiPaw.11G023700' => 'cil', 'CiPaw.12G003700' => 'cil', 'ClCG06G017100' => 'cla', 'ClCG06G018110' => 'cla', 'ClCG07G008800' => 'cla', 'ClCG07G015330' => 'cla', 'COL.COLO4_13698' => 'col', 'COL.COLO4_16659' => 'col', 'COL.COLO4_21986' => 'col', 'COL.COLO4_24049' => 'col', 'COL.COLO4_29061' => 'col', 'COL.COLO4_29075' => 'col', 'COL.COLO4_30094' => 'col', 'Cpa.g.c33689' => 'cpa', 'Cpa.g.sc108.39' => 'cpa', 'Cpa.g.sc108.41' => 'cpa', 'Cpa.g.sc1163.1' => 'cpa', 'Cpa.g.sc4.155' => 'cpa', 'Cpa.g.sc6.194' => 'cpa', 'CsaV3_1G000340' => 'csa', 'CsaV3_1G001400' => 'csa', 'CsaV3_4G002220' => 'csa', 'CsaV3_4G005370' => 'csa', 'CSS0007487' => 'camsi', 'CSS0008066' => 'camsi', 'CSS0009120' => 'camsi', 'CSS0015512' => 'camsi', 'CSS0022409' => 'camsi', 'CSS0025358' => 'camsi', 'CSS0044547' => 'camsi', 'DCAR_013057' => 'dca', 'DCAR_015058' => 'dca', 'DCAR_016027' => 'dca', 'DCAR_017327' => 'dca', 'DCAR_020743' => 'dca', 'DCAR_026157' => 'dca', 'DCAR_032339' => 'dca', 'DCAR_032340' => 'dca', 'Dinv11200' => 'din', 'Dinv11201' => 'din', 'Dinv20631' => 'din', 'Dinv23182' => 'din', 'Dinv33466' => 'din', 'Dinv33583' => 'din', 'Dinv38565' => 'din', 'Duzib068G0200' => 'dzi', 'Duzib147G0132' => 'dzi', 'Duzib147G0635' => 'dzi', 'Duzib205G1670' => 'dzi', 'Duzib251G0606' => 'dzi', 'ECA232G3336' => 'eca', 'ECA232G3763' => 'eca', 'ECA232G4845' => 'eca', 'ECA234G1607' => 'eca', 'ECA246G0932' => 'eca', 'ECA247G0781' => 'eca', 'ECA247G1932' => 'eca', 'ECA247G2079' => 'eca', 'ECA247G3338' => 'eca', 'ECA247G4115' => 'eca', 'EL10Ac3g06552' => 'bvu', 'EL10Ac5g10721' => 'bvu', 'EL10Ac5g10722' => 'bvu', 'EL10Ac5g10723' => 'bvu', 'EL10Ac5g11361' => 'bvu', 'EL10Ac6g13553' => 'bvu', 'EL10As8g23872' => 'bvu', 'Eucgr.B00250' => 'egr', 'Eucgr.B00251' => 'egr', 'Eucgr.B03533' => 'egr', 'Eucgr.I02381' => 'egr', 'Eucgr.K02700' => 'egr', 'FAN02G0174' => 'fan', 'FAN02G3146' => 'fan', 'FAN04G1672' => 'fan', 'FAN04G2273' => 'fan', 'FAN05G2791' => 'fan', 'FAN05G4035' => 'fan', 'FAN07G0834' => 'fan', 'FAN08G1198' => 'fan', 'FAN09G4182' => 'fan', 'FAN12G0496' => 'fan', 'FAN13G1027' => 'fan', 'FAN13G2951' => 'fan', 'FAN14G0705' => 'fan', 'FAN14G0720' => 'fan', 'FAN17G0201' => 'fan', 'FAN17G2665' => 'fan', 'FAN18G1456' => 'fan', 'FAN18G1525' => 'fan', 'FAN18G3500' => 'fan', 'FAN28G2670' => 'fan', 'FvH4_1g12391' => 'fve', 'FvH4_4g23220' => 'fve', 'FvH4_5g08810' => 'fve', 'FvH4_5g28960' => 'fve', 'FvH4_6g42820' => 'fve', 'FvH4_6g51110' => 'fve', 'Glyma.02G051802' => 'gma', 'Glyma.04G185300' => 'gma', 'Glyma.05G202900' => 'gma', 'Glyma.08G010300' => 'gma', 'Glyma.16G131900' => 'gma', 'Glyma.17G087900' => 'gma', 'Gohir.A07G048600' => 'ghi', 'Gohir.A11G179000' => 'ghi', 'Gohir.A12G140900' => 'ghi', 'Gohir.A12G140950' => 'ghi', 'Gohir.A12G191700' => 'ghi', 'Gohir.A13G086300' => 'ghi', 'Gohir.D07G052900' => 'ghi', 'Gohir.D11G186600' => 'ghi', 'Gohir.D12G145575' => 'ghi', 'Gohir.D12G145650' => 'ghi', 'Gohir.D12G145725' => 'ghi', 'Gohir.D12G194050' => 'ghi', 'Gohir.D13G091800' => 'ghi', 'Gorai.001G055900' => 'gra', 'Gorai.007G198400' => 'gra', 'Gorai.008G157000' => 'gra', 'Gorai.008G157100' => 'gra', 'Gorai.008G208700' => 'gra', 'Gorai.010G138700' => 'gra', 'GSVIVG01000977001' => 'vvi', 'GSVIVG01007708001' => 'vvi', 'GSVIVG01008587001' => 'vvi', 'GSVIVG01018849001' => 'vvi', 'GSVIVG01032432001' => 'vvi', 'HanXRQChr02g0034131' => 'han', 'HanXRQChr02g0035981' => 'han', 'HanXRQChr02g0035991' => 'han', 'HanXRQChr05g0155611' => 'han', 'HanXRQChr05g0155621' => 'han', 'HanXRQChr08g0236501' => 'han', 'HanXRQChr09g0261321' => 'han', 'HanXRQChr09g0272081' => 'han', 'HanXRQChr10g0310741' => 'han', 'HanXRQChr11g0325591' => 'han', 'HanXRQChr12g0385691' => 'han', 'HanXRQChr13g0387801' => 'han', 'HanXRQChr15g0463011' => 'han', 'Haze_03826' => 'cav', 'Haze_03827' => 'cav', 'Haze_07183' => 'cav', 'Haze_07537' => 'cav', 'Haze_07539' => 'cav', 'Haze_12461' => 'cav', 'Haze_16115' => 'cav', 'Haze_16808' => 'cav', 'Haze_18531' => 'cav', 'Hma1.2p1_0046F.1_g026700' => 'hma', 'Hma1.2p1_0046F.1_g026710' => 'hma', 'Hma1.2p1_0168F.1_g074340' => 'hma', 'Hma1.2p1_0266F.1_g107030' => 'hma', 'Hma1.2p1_0266F.1_g107060' => 'hma', 'Hma1.2p1_0275F.1_g110510' => 'hma', 'Hma1.2p1_0592F.1_g185490' => 'hma', 'Hma1.2p1_0592F.1_g185500' => 'hma', 'Hma1.2p1_0592F.1_g185510' => 'hma', 'Hma1.2p1_0592F.1_g185520' => 'hma', 'Hma1.2p1_0592F.1_g185530' => 'hma', 'Hma1.2p1_0818F.1_g223450' => 'hma', 'HPP92_009708' => 'vpl', 'HPP92_009793' => 'vpl', 'HPP92_009796' => 'vpl', 'HPP92_009797' => 'vpl', 'HPP92_014940' => 'vpl', 'HPP92_014988' => 'vpl', 'Hund02463' => 'sun', 'Hund02760' => 'sun', 'Hund05071' => 'sun', 'Hund10108' => 'sun', 'Hund11204' => 'sun', 'Hund14016' => 'sun', 'Hund16464' => 'sun', 'Lalb_Chr09g0333391' => 'lal', 'Lalb_Chr11g0070461' => 'lal', 'Lalb_Chr12g0201671' => 'lal', 'Lalb_Chr13g0297161' => 'lal', 'Lj1g0002823' => 'lja', 'Lj3C1074T6' => 'lonja', 'Lj4A212T28' => 'lonja', 'Lj4g0005516' => 'lja', 'Lj4g0013705' => 'lja', 'Lj4g0027865' => 'lja', 'Lj5C92G16' => 'lonja', 'Lj5C92T12' => 'lonja', 'Lj7C596T3' => 'lonja', 'Lj9A446G59' => 'lonja', 'Lj9A482G21' => 'lonja', 'Lsat_1_v5_gn_1_28261' => 'lsa', 'Lsat_1_v5_gn_1_28281' => 'lsa', 'Lsat_1_v5_gn_1_32721' => 'lsa', 'Lsat_1_v5_gn_4_151760' => 'lsa', 'Lsat_1_v5_gn_4_2120' => 'lsa', 'Lsat_1_v5_gn_4_75761' => 'lsa', 'Lsat_1_v5_gn_5_10920' => 'lsa', 'Manes.02G099900' => 'mes', 'Manes.11G096200' => 'mes', 'Manes.12G007200' => 'mes', 'Manes.14G048300' => 'mes', 'Manes.17G114700' => 'mes', 'Mapoly0002s0070' => 'mpo', 'Mapoly0029s0099' => 'mpo', 'MBI07_g24742_MAGBIO' => 'mbi', 'MBI10_g27988_MAGBIO' => 'mbi', 'MBI11_g13057_MAGBIO' => 'mbi', 'MD02G1137200' => 'mdo', 'MD06G1137200' => 'mdo', 'MD07G1122300' => 'mdo', 'MD09G1078200' => 'mdo', 'MD13G1123700' => 'mdo', 'MD14G1151900' => 'mdo', 'MD17G1030900' => 'mdo', 'MD17G1068200' => 'mdo', 'MD17G1068600' => 'mdo', 'Medtr3g077540' => 'mtr', 'Medtr4g105530' => 'mtr', 'Medtr8g076580' => 'mtr', 'Medtr8g076590' => 'mtr', 'Medtr8g096410' => 'mtr', 'MELO3C016411.2' => 'cme', 'MELO3C017780.2' => 'cme', 'MELO3C022560.2' => 'cme', 'MELO3C026187.2' => 'cme', 'MELO3C026286.2' => 'cme', 'MELO3C032854.2' => 'cme', 'Migut.H02495' => 'egut', 'Migut.I00561' => 'egut', 'Migut.K01015' => 'egut', 'Migut.K01016' => 'egut', 'Migut.L00743' => 'egut', 'Migut.L00744' => 'egut', 'Migut.L00746' => 'egut', 'Migut.L00798' => 'egut', 'Migut.L00799' => 'egut', 'Migut.N02096' => 'egut', 'MSTRG.11259' => 'ama', 'MSTRG.23142' => 'ama', 'MSTRG.2499' => 'ama', 'Nitab4.5_0000003g0730' => 'nta', 'Nitab4.5_0000137g0020' => 'nta', 'Nitab4.5_0000721g0210' => 'nta', 'Nitab4.5_0000723g0050' => 'nta', 'Nitab4.5_0000913g0070' => 'nta', 'Nitab4.5_0001332g0040' => 'nta', 'Nitab4.5_0001771g0050' => 'nta', 'Nitab4.5_0001918g0050' => 'nta', 'Nitab4.5_0002686g0030' => 'nta', 'Nitab4.5_0003156g0020' => 'nta', 'Nitab4.5_0003383g0040' => 'nta', 'Nitab4.5_0003918g0010' => 'nta', 'Nitab4.5_0006760g0010' => 'nta', 'Nn1g05981' => 'nnu', 'Nn1g06288' => 'nnu', 'Nn3g16371' => 'nnu', 'Nn3g16786' => 'nnu', 'Nn4g22232' => 'nnu', 'Oeu005144.1' => 'oeu', 'Oeu005145.1' => 'oeu', 'Oeu011348.1' => 'oeu', 'Oeu016415.1' => 'oeu', 'Oeu023501.1' => 'oeu', 'Oeu044473.1' => 'oeu', 'Oeu048892.2' => 'oeu', 'Os01g0549200' => 'osa', 'Os02g0469300' => 'osa', 'Os04g0311100' => 'osa', 'Os06g0474900' => 'osa', 'Os10g0181700' => 'osa', 'Os11g0454800' => 'osa', 'Peaxi162Scf00037g00714' => 'pax', 'Peaxi162Scf00084g01217' => 'pax', 'Peaxi162Scf00257g00217' => 'pax', 'Peaxi162Scf00516g00215' => 'pax', 'Peaxi162Scf00689g00123' => 'pax', 'PGR044G2719' => 'pgr', 'PGR083G1360' => 'pgr', 'PGR102G2849' => 'pgr', 'PGR119G2534' => 'pgr', 'PGSC0003DMG400003538' => 'stu', 'PGSC0003DMG400028138' => 'stu', 'PGSC0003DMG400031732' => 'stu', 'PGSC0003DMG400038165' => 'stu', 'Phvul.002G284600' => 'pvu', 'Phvul.003G258200' => 'pvu', 'Phvul.009G176500' => 'pvu', 'Potri.003G167201' => 'ptr', 'Potri.005G118400' => 'ptr', 'Potri.012G089000' => 'ptr', 'Potri.012G102800' => 'ptr', 'Potri.015G079400' => 'ptr', 'Potri.015G100900' => 'ptr', 'Pp3c14_9810' => 'ppa', 'Pp3c15_10450' => 'ppa', 'Pp3c20_19150' => 'ppa', 'Pp3c23_12740' => 'ppa', 'Pp3c23_6310' => 'ppa', 'Pp3c24_3720' => 'ppa', 'Pp3c27_2580' => 'ppa', 'Pp3c9_8990' => 'ppa', 'PRCOL_00002854' => 'pco', 'Prupe.1G221200' => 'ppe', 'Prupe.3G289000' => 'ppe', 'Prupe.5G147000' => 'ppe', 'Prupe.6G157300' => 'ppe', 'Prupe.7G163400' => 'ppe', 'Psat0s2177g0040' => 'psa', 'Psat3g174760' => 'psa', 'Psat3g192160' => 'psa', 'Psat4g058520' => 'psa', 'Psat4g096840' => 'psa', 'Psat7g037320' => 'psa', 'PSO017G1274' => 'pso', 'PSO017G5166' => 'pso', 'PSO063G4558' => 'pso', 'PSO170G4458' => 'pso', 'PSO170G5005' => 'pso', 'PSO210G6156' => 'pso', 'PSO210G6635' => 'pso', 'PSO210G7397' => 'pso', 'PSO210G7700' => 'pso', 'PSO455G0035' => 'pso', 'PSO455G0180' => 'pso', 'PSO478G4515' => 'pso', 'PSO832G1305' => 'pso', 'PSO832G3489' => 'pso', 'QL02p075247' => 'qlo', 'QL03p051148' => 'qlo', 'QL05p010313' => 'qlo', 'QL06p034627' => 'qlo', 'QL10p001889' => 'qlo', 'QL10p010846' => 'qlo', 'RcHm_v2.0_Chr1g0350621' => 'rch', 'RcHm_v2.0_Chr1g0350641' => 'rch', 'RcHm_v2.0_Chr2g0092891' => 'rch', 'RcHm_v2.0_Chr2g0100251' => 'rch', 'RcHm_v2.0_Chr2g0158661' => 'rch', 'RcHm_v2.0_Chr2g0172741' => 'rch', 'RcHm_v2.0_Chr4g0429571' => 'rch', 'RcHm_v2.0_Chr5g0042471' => 'rch', 'RcHm_v2.0_Chr7g0189451' => 'rch', 'Rhsim08G0052000' => 'rsi', 'Rhsim08G0174400' => 'rsi', 'Rhsim08G0193200' => 'rsi', 'Rhsim10G0214800' => 'rsi', 'Rhsim10G0214900' => 'rsi', 'Rhsim10G0215000' => 'rsi', 'Rhsim12G0022900' => 'rsi', 'Rhsim12G0177500' => 'rsi', 'Rhsim12G0177700' => 'rsi', 'Sabra03G0122600' => 'sbr', 'Sabra05G0097400' => 'sbr', 'Sabra12G0064100' => 'sbr', 'Sabra15G0121300' => 'sbr', 'SalBow2G0642' => 'sbo', 'SalBow5G2667' => 'sbo', 'SalBow5G4873' => 'sbo', 'SalBow8G2395' => 'sbo', 'Sc03g0003290' => 'sci', 'Sc10g0010130' => 'sci', 'Sc22g0003650' => 'sci', 'Sed0001603' => 'sed', 'Sed0004259' => 'sed', 'Sed0006789' => 'sed', 'Sed0011838' => 'sed', 'Sed0012964' => 'sed', 'Sed0016383' => 'sed', 'Sed0019010' => 'sed', 'Sed0020188' => 'sed', 'SEGI_04702' => 'sgi', 'SEGI_17231' => 'sgi', 'SEGI_18877' => 'sgi', 'SEGI_25196' => 'sgi', 'SEGI_25515' => 'sgi', 'SEGI_28445' => 'sgi', 'SEGI_37452' => 'sgi', 'SGA_v2.0_scaffold188G40336' => 'sas', 'SGA_v2.0_scaffold228G43247' => 'sas', 'SGA_v2.0_scaffold280G46853' => 'sas', 'SGA_v2.0_scaffold34G13808' => 'sas', 'SGA_v2.0_scaffold40G15576' => 'sas', 'SGA_v2.0_scaffold611G53188' => 'sas', 'SGA_v2.0_scaffold78G25461' => 'sas', 'SGA_v2.0_scaffold90G27888' => 'sas', 'SHI08601' => 'shi', 'SHI08606' => 'shi', 'SHI17117' => 'shi', 'SHI17119' => 'shi', 'SMO118G0201' => 'smo', 'SMO169G0247' => 'smo', 'SMO176G0006' => 'smo', 'SMO176G0015' => 'smo', 'SMO202G0006' => 'smo', 'SMO240G0050' => 'smo', 'SMO286G0009' => 'smo', 'SMO338G0033' => 'smo', 'SMO356G0533' => 'smo', 'SMO364G0382' => 'smo', 'SMO367G0166' => 'smo', 'SMO367G1098' => 'smo', 'Solyc01g009920.3' => 'sly', 'Solyc01g099300.3' => 'sly', 'Solyc02g084700.3' => 'sly', 'Solyc03g097520.3' => 'sly', 'Solyc06g071580.3' => 'sly', 'Solyc10g081760.3' => 'sly', 'Sopen01g005480' => 'spe', 'Sopen01g042850' => 'spe', 'Sopen02g029370' => 'spe', 'Sopen03g028280' => 'spe', 'Sopen06g027870' => 'spe', 'Sopen10g032270' => 'spe', 'Sp5g18180' => 'spa', 'Sp6g12880' => 'spa', 'Sp6g30850' => 'spa', 'Sp7g22960' => 'spa', 'Sp7g34010' => 'spa', 'SpUn1326_0010' => 'spa', 'TAR371G0242' => 'tar', 'TAR622G0638' => 'tar', 'TAR628G1548' => 'tar', 'TAR629G1079' => 'tar', 'TAR629G3413' => 'tar', 'THA.LOC104804249' => 'tha', 'THA.LOC104808315' => 'tha', 'THA.LOC104809238' => 'tha', 'THA.LOC104825484' => 'tha', 'Thecc.01G025500' => 'tca', 'Thecc.03G015800' => 'tca', 'Thecc.03G018000' => 'tca', 'Thecc.03G134800' => 'tca', 'Thecc.04G014700' => 'tca', 'Thhalv10006991m.g' => 'esa', 'Thhalv10012707m.g' => 'esa', 'Thhalv10015739m.g' => 'esa', 'Thhalv10024553m.g' => 'esa', 'Thhalv10024673m.g' => 'esa', 'Thhalv10029187m.g' => 'esa', 'TPR.G12971' => 'tpr', 'TPR.G29396' => 'tpr', 'TPR.G33376' => 'tpr', 'TPR.G35508' => 'tpr', 'TPR.G35516' => 'tpr', 'TPR.G37317' => 'tpr', 'TPR.G37389' => 'tpr', 'TPR.G37523' => 'tpr', 'TPR.G559' => 'tpr', 'TWI14G0070' => 'twi', 'TWI14G0729' => 'twi', 'TWI18G0596' => 'twi', 'TWI39G0780' => 'twi', 'TWI39G0850' => 'twi', 'TWI73G1052' => 'twi', 'unitig_52.g17485' => 'ugi', 'unitig_61.g26355' => 'ugi', 'vmacro01040' => 'vma', 'vmacro16731' => 'vma', 'vmacro18270' => 'vma', 'vmacro19142' => 'vma', 'vmacro19407' => 'vma', 'vmacro19408' => 'vma', 'vmacro21899' => 'vma', 'vmacro21900' => 'vma', 'vmacro21901' => 'vma', 'VMungo0251G0490' => 'vmu', 'VMungo0251G1748' => 'vmu', 'VMungo1309G0421' => 'vmu', 'Zm00001eb086500' => 'zma', 'Zm00001eb150680' => 'zma', 'Zm00001eb162330' => 'zma', 'Zm00001eb203130' => 'zma', 'Zm00001eb369480' => 'zma', 'Zm00001eb382340' => 'zma', 'Zm00001eb416360' => 'zma' ), 'gf_id' => 'HOM05D000902', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000902' ), 'data_identifier' => 'HOM05D000902', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000902', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '663', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02470' => 'bna', 'A01p16260' => 'bna', 'A02p01680' => 'bna', 'A03p16600' => 'bna', 'A03p55660' => 'bna', 'A03p64160' => 'bna', 'A03p64170' => 'bna', 'A08p31900' => 'bna', 'A09p59530' => 'bna', 'A10p08230' => 'bna', 'A10p25090' => 'bna', 'Aa31LG3G7100' => 'aar', 'Aa31LG3G7110' => 'aar', 'Aa31LG6G13160' => 'aar', 'Aa31LG7G10770' => 'aar', 'Aa31LG7G3830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2723' => 'aag', 'Actinidia08045' => 'ach', 'Actinidia08888' => 'ach', 'Actinidia18333' => 'ach', 'Actinidia19334' => 'ach', 'Actinidia25552' => 'ach', 'Actinidia26089' => 'ach', 'Actinidia30615' => 'ach', 'Actinidia30616' => 'ach', 'Actinidia33083' => 'ach', 'Actinidia35762' => 'ach', 'Ah.02g110620' => 'amhyb', 'Ah.11g046390' => 'amhyb', 'AL1G31670' => 'aly', 'AL6G23730' => 'aly', 'AL7G14740' => 'aly', 'AL7G14750' => 'aly', 'AL7G14760' => 'aly', 'AL7G28220' => 'aly', 'AL8G24940' => 'aly', 'Aqoxy3G01665' => 'aox', 'Aqoxy3G02853' => 'aox', 'Aqoxy5G01513' => 'aox', 'Aqoxy5G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8SKA4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ75LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKDA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0LJZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7REX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZP4YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWX7I5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2QKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS0L9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPCD8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q161UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC7XCF' => 'arhy', 'AT1G19100' => 'ath', 'AT4G24970' => 'ath', 'AT4G36270' => 'ath', 'AT4G36280' => 'ath', 'AT4G36290' => 'ath', 'AT5G13130' => 'ath', 'AT5G50780' => 'ath', 'ATR0582G266' => 'atr', 'ATR0661G195' => 'atr', 'ATR1152G031' => 'atr', 'Atru.chr11.2382' => 'acertr', 'Atru.chr12.2337' => 'acertr', 'Atru.chr3.744' => 'acertr', 'Atru.chr6.1870' => 'acertr', 'Atru.chr9.2515' => 'acertr', 'AUR62004120' => 'cqu', 'AUR62005667' => 'cqu', 'AUR62007634' => 'cqu', 'AUR62008186' => 'cqu', 'AUR62008187' => 'cqu', 'AUR62008188' => 'cqu', 'AUR62027954' => 'cqu', 'AUR62028766' => 'cqu', 'AUR62028767' => 'cqu', 'AUR62028768' => 'cqu', 'AUR62028886' => 'cqu', 'AUR62029563' => 'cqu', 'AUR62038832' => 'cqu', 'BcaB01g04149' => 'bca', 'BcaB03g12940' => 'bca', 'BcaB03g13090' => 'bca', 'BcaB03g14466' => 'bca', 'BcaB05g24035' => 'bca', 'BcaC01g06050' => 'bca', 'BcaC04g19148' => 'bca', 'BcaC04g20761' => 'bca', 'BcaC06g32845' => 'bca', 'BcaC07g41274' => 'bca', 'BcaC09g50827' => 'bca', 'BcaNung00741' => 'bca', 'BcaNung00742' => 'bca', 'BcaNung01859' => 'bca', 'BcaNung03985' => 'bca', 'BcaNung03989' => 'bca', 'BcaNung05661' => 'bca', 'BolC1t00257H' => 'bol', 'BolC1t01956H' => 'bol', 'BolC2t06534H' => 'bol', 'BolC3t14334H' => 'bol', 'BolC5t30451H' => 'bol', 'BolC7t45880H' => 'bol', 'BolC7t46586H' => 'bol', 'BolC8t49301H' => 'bol', 'BolC8t51837H' => 'bol', 'BolC9t56822H' => 'bol', 'BolC9t59235H' => 'bol', 'BraA01t00234Z' => 'bra', 'BraA01t01563Z' => 'bra', 'BraA02t05147Z' => 'bra', 'BraA03t10947Z' => 'bra', 'BraA03t14633Z' => 'bra', 'BraA08t35112Z' => 'bra', 'BraA09t41330Z' => 'bra', 'BraA10t44570Z' => 'bra', 'C01p02670' => 'bna', 'C01p20260' => 'bna', 'C02p05890' => 'bna', 'C03p19530' => 'bna', 'C05p17470' => 'bna', 'C07p53900' => 'bna', 'C07p61630' => 'bna', 'C08p16800' => 'bna', 'C08p42810' => 'bna', 'C09p39480' => 'bna', 'C09p63980' => 'bna', 'CAN.G1001.7' => 'can', 'CAN.G1034.55' => 'can', 'CAN.G143.7' => 'can', 'CAN.G3340.1' => 'can', 'CAN.G358.19' => 'can', 'CAN.G373.2' => 'can', 'CAN.G674.16' => 'can', 'CAN.G674.17' => 'can', 'CAN.G674.18' => 'can', 'CAN.G732.2' => 'can', 'CAN.G732.3' => 'can', 'CAN.G993.39' => 'can', 'CANSAT01G2052' => 'cansat', 'CANSAT80G0070' => 'cansat', 'CANSAT80G0483' => 'cansat', 'CANSAT80G0625' => 'cansat', 'CARHR019690' => 'chi', 'CARHR080280' => 'chi', 'CARHR152750' => 'chi', 'CARHR152760' => 'chi', 'CARHR152770' => 'chi', 'CARHR200340' => 'chi', 'CARHR232370' => 'chi', 'CARHR244670' => 'chi', 'CARHR244680' => 'chi', 'CARHR257520' => 'chi', 'Carub.0001s1872' => 'cru', 'Carub.0006s1130' => 'cru', 'Carub.0007s0396' => 'cru', 'Carub.0007s0397' => 'cru', 'Carub.0007s1608' => 'cru', 'Carub.0008s1068' => 'cru', 'Carub.0008s1077' => 'cru', 'Ca_16158_v3' => 'car', 'Ca_17571_v3' => 'car', 'Ca_21936_v3' => 'car', 'Ca_22350_v3' => 'car', 'CBR_g22445' => 'cbr', 'CBR_g26290' => 'cbr', 'Cc04_g09610' => 'ccan', 'Cc04_g12280' => 'ccan', 'Cc07_g10230' => 'ccan', 'CDE02G0093' => 'cde', 'CDE02G0701' => 'cde', 'CDE04G1050' => 'cde', 'CDE05G1833' => 'cde', 'CDE05G3058' => 'cde', 'CDE05G3380' => 'cde', 'CDE06G0536' => 'cde', 'Cfa006923' => 'cfa', 'Cfa009402' => 'cfa', 'Cfa018751' => 'cfa', 'Cfa019164' => 'cfa', 'Cfa022935' => 'cfa', 'Ciclev10019081m.g' => 'ccl', 'Ciclev10025076m.g' => 'ccl', 'Ciclev10030712m.g' => 'ccl', 'Ciclev10033760m.g' => 'ccl', 'CiPaw.05G105600' => 'cil', 'CiPaw.08G136700' => 'cil', 'CiPaw.11G003900' => 'cil', 'CiPaw.11G023700' => 'cil', 'CiPaw.12G003700' => 'cil', 'ClCG06G017100' => 'cla', 'ClCG06G018110' => 'cla', 'ClCG07G008800' => 'cla', 'ClCG07G015330' => 'cla', 'COL.COLO4_13698' => 'col', 'COL.COLO4_16659' => 'col', 'COL.COLO4_21986' => 'col', 'COL.COLO4_24049' => 'col', 'COL.COLO4_29061' => 'col', 'COL.COLO4_29075' => 'col', 'COL.COLO4_30094' => 'col', 'Cpa.g.c33689' => 'cpa', 'Cpa.g.sc108.39' => 'cpa', 'Cpa.g.sc108.41' => 'cpa', 'Cpa.g.sc1163.1' => 'cpa', 'Cpa.g.sc4.155' => 'cpa', 'Cpa.g.sc6.194' => 'cpa', 'CsaV3_1G000340' => 'csa', 'CsaV3_1G001400' => 'csa', 'CsaV3_4G002220' => 'csa', 'CsaV3_4G005370' => 'csa', 'CSS0007487' => 'camsi', 'CSS0008066' => 'camsi', 'CSS0009120' => 'camsi', 'CSS0015512' => 'camsi', 'CSS0022409' => 'camsi', 'CSS0025358' => 'camsi', 'CSS0044547' => 'camsi', 'DCAR_013057' => 'dca', 'DCAR_015058' => 'dca', 'DCAR_016027' => 'dca', 'DCAR_017327' => 'dca', 'DCAR_020743' => 'dca', 'DCAR_026157' => 'dca', 'DCAR_032339' => 'dca', 'DCAR_032340' => 'dca', 'Dinv11200' => 'din', 'Dinv11201' => 'din', 'Dinv20631' => 'din', 'Dinv23182' => 'din', 'Dinv33466' => 'din', 'Dinv33583' => 'din', 'Dinv38565' => 'din', 'Duzib068G0200' => 'dzi', 'Duzib147G0132' => 'dzi', 'Duzib147G0635' => 'dzi', 'Duzib205G1670' => 'dzi', 'Duzib251G0606' => 'dzi', 'ECA232G3336' => 'eca', 'ECA232G3763' => 'eca', 'ECA232G4845' => 'eca', 'ECA234G1607' => 'eca', 'ECA246G0932' => 'eca', 'ECA247G0781' => 'eca', 'ECA247G1932' => 'eca', 'ECA247G2079' => 'eca', 'ECA247G3338' => 'eca', 'ECA247G4115' => 'eca', 'EL10Ac3g06552' => 'bvu', 'EL10Ac5g10721' => 'bvu', 'EL10Ac5g10722' => 'bvu', 'EL10Ac5g10723' => 'bvu', 'EL10Ac5g11361' => 'bvu', 'EL10Ac6g13553' => 'bvu', 'EL10As8g23872' => 'bvu', 'Eucgr.B00250' => 'egr', 'Eucgr.B00251' => 'egr', 'Eucgr.B03533' => 'egr', 'Eucgr.I02381' => 'egr', 'Eucgr.K02700' => 'egr', 'FAN02G0174' => 'fan', 'FAN02G3146' => 'fan', 'FAN04G1672' => 'fan', 'FAN04G2273' => 'fan', 'FAN05G2791' => 'fan', 'FAN05G4035' => 'fan', 'FAN07G0834' => 'fan', 'FAN08G1198' => 'fan', 'FAN09G4182' => 'fan', 'FAN12G0496' => 'fan', 'FAN13G1027' => 'fan', 'FAN13G2951' => 'fan', 'FAN14G0705' => 'fan', 'FAN14G0720' => 'fan', 'FAN17G0201' => 'fan', 'FAN17G2665' => 'fan', 'FAN18G1456' => 'fan', 'FAN18G1525' => 'fan', 'FAN18G3500' => 'fan', 'FAN28G2670' => 'fan', 'FvH4_1g12391' => 'fve', 'FvH4_4g23220' => 'fve', 'FvH4_5g08810' => 'fve', 'FvH4_5g28960' => 'fve', 'FvH4_6g42820' => 'fve', 'FvH4_6g51110' => 'fve', 'Glyma.02G051802' => 'gma', 'Glyma.04G185300' => 'gma', 'Glyma.05G202900' => 'gma', 'Glyma.08G010300' => 'gma', 'Glyma.16G131900' => 'gma', 'Glyma.17G087900' => 'gma', 'Gohir.A07G048600' => 'ghi', 'Gohir.A11G179000' => 'ghi', 'Gohir.A12G140900' => 'ghi', 'Gohir.A12G140950' => 'ghi', 'Gohir.A12G191700' => 'ghi', 'Gohir.A13G086300' => 'ghi', 'Gohir.D07G052900' => 'ghi', 'Gohir.D11G186600' => 'ghi', 'Gohir.D12G145575' => 'ghi', 'Gohir.D12G145650' => 'ghi', 'Gohir.D12G145725' => 'ghi', 'Gohir.D12G194050' => 'ghi', 'Gohir.D13G091800' => 'ghi', 'Gorai.001G055900' => 'gra', 'Gorai.007G198400' => 'gra', 'Gorai.008G157000' => 'gra', 'Gorai.008G157100' => 'gra', 'Gorai.008G208700' => 'gra', 'Gorai.010G138700' => 'gra', 'GSVIVG01000977001' => 'vvi', 'GSVIVG01007708001' => 'vvi', 'GSVIVG01008587001' => 'vvi', 'GSVIVG01018849001' => 'vvi', 'GSVIVG01032432001' => 'vvi', 'HanXRQChr02g0034131' => 'han', 'HanXRQChr02g0035981' => 'han', 'HanXRQChr02g0035991' => 'han', 'HanXRQChr05g0155611' => 'han', 'HanXRQChr05g0155621' => 'han', 'HanXRQChr08g0236501' => 'han', 'HanXRQChr09g0261321' => 'han', 'HanXRQChr09g0272081' => 'han', 'HanXRQChr10g0310741' => 'han', 'HanXRQChr11g0325591' => 'han', 'HanXRQChr12g0385691' => 'han', 'HanXRQChr13g0387801' => 'han', 'HanXRQChr15g0463011' => 'han', 'Haze_03826' => 'cav', 'Haze_03827' => 'cav', 'Haze_07183' => 'cav', 'Haze_07537' => 'cav', 'Haze_07539' => 'cav', 'Haze_12461' => 'cav', 'Haze_16115' => 'cav', 'Haze_16808' => 'cav', 'Haze_18531' => 'cav', 'Hma1.2p1_0046F.1_g026700' => 'hma', 'Hma1.2p1_0046F.1_g026710' => 'hma', 'Hma1.2p1_0168F.1_g074340' => 'hma', 'Hma1.2p1_0266F.1_g107030' => 'hma', 'Hma1.2p1_0266F.1_g107060' => 'hma', 'Hma1.2p1_0275F.1_g110510' => 'hma', 'Hma1.2p1_0592F.1_g185490' => 'hma', 'Hma1.2p1_0592F.1_g185500' => 'hma', 'Hma1.2p1_0592F.1_g185510' => 'hma', 'Hma1.2p1_0592F.1_g185520' => 'hma', 'Hma1.2p1_0592F.1_g185530' => 'hma', 'Hma1.2p1_0818F.1_g223450' => 'hma', 'HPP92_009708' => 'vpl', 'HPP92_009793' => 'vpl', 'HPP92_009796' => 'vpl', 'HPP92_009797' => 'vpl', 'HPP92_014940' => 'vpl', 'HPP92_014988' => 'vpl', 'Hund02463' => 'sun', 'Hund02760' => 'sun', 'Hund05071' => 'sun', 'Hund10108' => 'sun', 'Hund11204' => 'sun', 'Hund14016' => 'sun', 'Hund16464' => 'sun', 'Lalb_Chr09g0333391' => 'lal', 'Lalb_Chr11g0070461' => 'lal', 'Lalb_Chr12g0201671' => 'lal', 'Lalb_Chr13g0297161' => 'lal', 'Lj1g0002823' => 'lja', 'Lj3C1074T6' => 'lonja', 'Lj4A212T28' => 'lonja', 'Lj4g0005516' => 'lja', 'Lj4g0013705' => 'lja', 'Lj4g0027865' => 'lja', 'Lj5C92G16' => 'lonja', 'Lj5C92T12' => 'lonja', 'Lj7C596T3' => 'lonja', 'Lj9A446G59' => 'lonja', 'Lj9A482G21' => 'lonja', 'Lsat_1_v5_gn_1_28261' => 'lsa', 'Lsat_1_v5_gn_1_28281' => 'lsa', 'Lsat_1_v5_gn_1_32721' => 'lsa', 'Lsat_1_v5_gn_4_151760' => 'lsa', 'Lsat_1_v5_gn_4_2120' => 'lsa', 'Lsat_1_v5_gn_4_75761' => 'lsa', 'Lsat_1_v5_gn_5_10920' => 'lsa', 'Manes.02G099900' => 'mes', 'Manes.11G096200' => 'mes', 'Manes.12G007200' => 'mes', 'Manes.14G048300' => 'mes', 'Manes.17G114700' => 'mes', 'Mapoly0002s0070' => 'mpo', 'Mapoly0029s0099' => 'mpo', 'MBI07_g24742_MAGBIO' => 'mbi', 'MBI10_g27988_MAGBIO' => 'mbi', 'MBI11_g13057_MAGBIO' => 'mbi', 'MD02G1137200' => 'mdo', 'MD06G1137200' => 'mdo', 'MD07G1122300' => 'mdo', 'MD09G1078200' => 'mdo', 'MD13G1123700' => 'mdo', 'MD14G1151900' => 'mdo', 'MD17G1030900' => 'mdo', 'MD17G1068200' => 'mdo', 'MD17G1068600' => 'mdo', 'Medtr3g077540' => 'mtr', 'Medtr4g105530' => 'mtr', 'Medtr8g076580' => 'mtr', 'Medtr8g076590' => 'mtr', 'Medtr8g096410' => 'mtr', 'MELO3C016411.2' => 'cme', 'MELO3C017780.2' => 'cme', 'MELO3C022560.2' => 'cme', 'MELO3C026187.2' => 'cme', 'MELO3C026286.2' => 'cme', 'MELO3C032854.2' => 'cme', 'Migut.H02495' => 'egut', 'Migut.I00561' => 'egut', 'Migut.K01015' => 'egut', 'Migut.K01016' => 'egut', 'Migut.L00743' => 'egut', 'Migut.L00744' => 'egut', 'Migut.L00746' => 'egut', 'Migut.L00798' => 'egut', 'Migut.L00799' => 'egut', 'Migut.N02096' => 'egut', 'MSTRG.11259' => 'ama', 'MSTRG.23142' => 'ama', 'MSTRG.2499' => 'ama', 'Nitab4.5_0000003g0730' => 'nta', 'Nitab4.5_0000137g0020' => 'nta', 'Nitab4.5_0000721g0210' => 'nta', 'Nitab4.5_0000723g0050' => 'nta', 'Nitab4.5_0000913g0070' => 'nta', 'Nitab4.5_0001332g0040' => 'nta', 'Nitab4.5_0001771g0050' => 'nta', 'Nitab4.5_0001918g0050' => 'nta', 'Nitab4.5_0002686g0030' => 'nta', 'Nitab4.5_0003156g0020' => 'nta', 'Nitab4.5_0003383g0040' => 'nta', 'Nitab4.5_0003918g0010' => 'nta', 'Nitab4.5_0006760g0010' => 'nta', 'Nn1g05981' => 'nnu', 'Nn1g06288' => 'nnu', 'Nn3g16371' => 'nnu', 'Nn3g16786' => 'nnu', 'Nn4g22232' => 'nnu', 'Oeu005144.1' => 'oeu', 'Oeu005145.1' => 'oeu', 'Oeu011348.1' => 'oeu', 'Oeu016415.1' => 'oeu', 'Oeu023501.1' => 'oeu', 'Oeu044473.1' => 'oeu', 'Oeu048892.2' => 'oeu', 'Os01g0549200' => 'osa', 'Os02g0469300' => 'osa', 'Os04g0311100' => 'osa', 'Os06g0474900' => 'osa', 'Os10g0181700' => 'osa', 'Os11g0454800' => 'osa', 'Peaxi162Scf00037g00714' => 'pax', 'Peaxi162Scf00084g01217' => 'pax', 'Peaxi162Scf00257g00217' => 'pax', 'Peaxi162Scf00516g00215' => 'pax', 'Peaxi162Scf00689g00123' => 'pax', 'PGR044G2719' => 'pgr', 'PGR083G1360' => 'pgr', 'PGR102G2849' => 'pgr', 'PGR119G2534' => 'pgr', 'PGSC0003DMG400003538' => 'stu', 'PGSC0003DMG400028138' => 'stu', 'PGSC0003DMG400031732' => 'stu', 'PGSC0003DMG400038165' => 'stu', 'Phvul.002G284600' => 'pvu', 'Phvul.003G258200' => 'pvu', 'Phvul.009G176500' => 'pvu', 'Potri.003G167201' => 'ptr', 'Potri.005G118400' => 'ptr', 'Potri.012G089000' => 'ptr', 'Potri.012G102800' => 'ptr', 'Potri.015G079400' => 'ptr', 'Potri.015G100900' => 'ptr', 'Pp3c14_9810' => 'ppa', 'Pp3c15_10450' => 'ppa', 'Pp3c20_19150' => 'ppa', 'Pp3c23_12740' => 'ppa', 'Pp3c23_6310' => 'ppa', 'Pp3c24_3720' => 'ppa', 'Pp3c27_2580' => 'ppa', 'Pp3c9_8990' => 'ppa', 'PRCOL_00002854' => 'pco', 'Prupe.1G221200' => 'ppe', 'Prupe.3G289000' => 'ppe', 'Prupe.5G147000' => 'ppe', 'Prupe.6G157300' => 'ppe', 'Prupe.7G163400' => 'ppe', 'Psat0s2177g0040' => 'psa', 'Psat3g174760' => 'psa', 'Psat3g192160' => 'psa', 'Psat4g058520' => 'psa', 'Psat4g096840' => 'psa', 'Psat7g037320' => 'psa', 'PSO017G1274' => 'pso', 'PSO017G5166' => 'pso', 'PSO063G4558' => 'pso', 'PSO170G4458' => 'pso', 'PSO170G5005' => 'pso', 'PSO210G6156' => 'pso', 'PSO210G6635' => 'pso', 'PSO210G7397' => 'pso', 'PSO210G7700' => 'pso', 'PSO455G0035' => 'pso', 'PSO455G0180' => 'pso', 'PSO478G4515' => 'pso', 'PSO832G1305' => 'pso', 'PSO832G3489' => 'pso', 'QL02p075247' => 'qlo', 'QL03p051148' => 'qlo', 'QL05p010313' => 'qlo', 'QL06p034627' => 'qlo', 'QL10p001889' => 'qlo', 'QL10p010846' => 'qlo', 'RcHm_v2.0_Chr1g0350621' => 'rch', 'RcHm_v2.0_Chr1g0350641' => 'rch', 'RcHm_v2.0_Chr2g0092891' => 'rch', 'RcHm_v2.0_Chr2g0100251' => 'rch', 'RcHm_v2.0_Chr2g0158661' => 'rch', 'RcHm_v2.0_Chr2g0172741' => 'rch', 'RcHm_v2.0_Chr4g0429571' => 'rch', 'RcHm_v2.0_Chr5g0042471' => 'rch', 'RcHm_v2.0_Chr7g0189451' => 'rch', 'Rhsim08G0052000' => 'rsi', 'Rhsim08G0174400' => 'rsi', 'Rhsim08G0193200' => 'rsi', 'Rhsim10G0214800' => 'rsi', 'Rhsim10G0214900' => 'rsi', 'Rhsim10G0215000' => 'rsi', 'Rhsim12G0022900' => 'rsi', 'Rhsim12G0177500' => 'rsi', 'Rhsim12G0177700' => 'rsi', 'Sabra03G0122600' => 'sbr', 'Sabra05G0097400' => 'sbr', 'Sabra12G0064100' => 'sbr', 'Sabra15G0121300' => 'sbr', 'SalBow2G0642' => 'sbo', 'SalBow5G2667' => 'sbo', 'SalBow5G4873' => 'sbo', 'SalBow8G2395' => 'sbo', 'Sc03g0003290' => 'sci', 'Sc10g0010130' => 'sci', 'Sc22g0003650' => 'sci', 'Sed0001603' => 'sed', 'Sed0004259' => 'sed', 'Sed0006789' => 'sed', 'Sed0011838' => 'sed', 'Sed0012964' => 'sed', 'Sed0016383' => 'sed', 'Sed0019010' => 'sed', 'Sed0020188' => 'sed', 'SEGI_04702' => 'sgi', 'SEGI_17231' => 'sgi', 'SEGI_18877' => 'sgi', 'SEGI_25196' => 'sgi', 'SEGI_25515' => 'sgi', 'SEGI_28445' => 'sgi', 'SEGI_37452' => 'sgi', 'SGA_v2.0_scaffold188G40336' => 'sas', 'SGA_v2.0_scaffold228G43247' => 'sas', 'SGA_v2.0_scaffold280G46853' => 'sas', 'SGA_v2.0_scaffold34G13808' => 'sas', 'SGA_v2.0_scaffold40G15576' => 'sas', 'SGA_v2.0_scaffold611G53188' => 'sas', 'SGA_v2.0_scaffold78G25461' => 'sas', 'SGA_v2.0_scaffold90G27888' => 'sas', 'SHI08601' => 'shi', 'SHI08606' => 'shi', 'SHI17117' => 'shi', 'SHI17119' => 'shi', 'SMO118G0201' => 'smo', 'SMO169G0247' => 'smo', 'SMO176G0006' => 'smo', 'SMO176G0015' => 'smo', 'SMO202G0006' => 'smo', 'SMO240G0050' => 'smo', 'SMO286G0009' => 'smo', 'SMO338G0033' => 'smo', 'SMO356G0533' => 'smo', 'SMO364G0382' => 'smo', 'SMO367G0166' => 'smo', 'SMO367G1098' => 'smo', 'Solyc01g009920.3' => 'sly', 'Solyc01g099300.3' => 'sly', 'Solyc02g084700.3' => 'sly', 'Solyc03g097520.3' => 'sly', 'Solyc06g071580.3' => 'sly', 'Solyc10g081760.3' => 'sly', 'Sopen01g005480' => 'spe', 'Sopen01g042850' => 'spe', 'Sopen02g029370' => 'spe', 'Sopen03g028280' => 'spe', 'Sopen06g027870' => 'spe', 'Sopen10g032270' => 'spe', 'Sp5g18180' => 'spa', 'Sp6g12880' => 'spa', 'Sp6g30850' => 'spa', 'Sp7g22960' => 'spa', 'Sp7g34010' => 'spa', 'SpUn1326_0010' => 'spa', 'TAR371G0242' => 'tar', 'TAR622G0638' => 'tar', 'TAR628G1548' => 'tar', 'TAR629G1079' => 'tar', 'TAR629G3413' => 'tar', 'THA.LOC104804249' => 'tha', 'THA.LOC104808315' => 'tha', 'THA.LOC104809238' => 'tha', 'THA.LOC104825484' => 'tha', 'Thecc.01G025500' => 'tca', 'Thecc.03G015800' => 'tca', 'Thecc.03G018000' => 'tca', 'Thecc.03G134800' => 'tca', 'Thecc.04G014700' => 'tca', 'Thhalv10006991m.g' => 'esa', 'Thhalv10012707m.g' => 'esa', 'Thhalv10015739m.g' => 'esa', 'Thhalv10024553m.g' => 'esa', 'Thhalv10024673m.g' => 'esa', 'Thhalv10029187m.g' => 'esa', 'TPR.G12971' => 'tpr', 'TPR.G29396' => 'tpr', 'TPR.G33376' => 'tpr', 'TPR.G35508' => 'tpr', 'TPR.G35516' => 'tpr', 'TPR.G37317' => 'tpr', 'TPR.G37389' => 'tpr', 'TPR.G37523' => 'tpr', 'TPR.G559' => 'tpr', 'TWI14G0070' => 'twi', 'TWI14G0729' => 'twi', 'TWI18G0596' => 'twi', 'TWI39G0780' => 'twi', 'TWI39G0850' => 'twi', 'TWI73G1052' => 'twi', 'unitig_52.g17485' => 'ugi', 'unitig_61.g26355' => 'ugi', 'vmacro01040' => 'vma', 'vmacro16731' => 'vma', 'vmacro18270' => 'vma', 'vmacro19142' => 'vma', 'vmacro19407' => 'vma', 'vmacro19408' => 'vma', 'vmacro21899' => 'vma', 'vmacro21900' => 'vma', 'vmacro21901' => 'vma', 'VMungo0251G0490' => 'vmu', 'VMungo0251G1748' => 'vmu', 'VMungo1309G0421' => 'vmu', 'Zm00001eb086500' => 'zma', 'Zm00001eb150680' => 'zma', 'Zm00001eb162330' => 'zma', 'Zm00001eb203130' => 'zma', 'Zm00001eb369480' => 'zma', 'Zm00001eb382340' => 'zma', 'Zm00001eb416360' => 'zma' ) $gf_id = 'HOM05D000902' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000902' ) $data_identifier = 'HOM05D000902' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 13, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 10, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 6, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 9, 'hma' => (int) 12, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 4, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 6, 'ppa' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 6, 'rch' => (int) 9, 'rsi' => (int) 9, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 12, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 3, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416360' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000902', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '663', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02470' => 'bna', 'A01p16260' => 'bna', 'A02p01680' => 'bna', 'A03p16600' => 'bna', 'A03p55660' => 'bna', 'A03p64160' => 'bna', 'A03p64170' => 'bna', 'A08p31900' => 'bna', 'A09p59530' => 'bna', 'A10p08230' => 'bna', 'A10p25090' => 'bna', 'Aa31LG3G7100' => 'aar', 'Aa31LG3G7110' => 'aar', 'Aa31LG6G13160' => 'aar', 'Aa31LG7G10770' => 'aar', 'Aa31LG7G3830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2723' => 'aag', 'Actinidia08045' => 'ach', 'Actinidia08888' => 'ach', 'Actinidia18333' => 'ach', 'Actinidia19334' => 'ach', 'Actinidia25552' => 'ach', 'Actinidia26089' => 'ach', 'Actinidia30615' => 'ach', 'Actinidia30616' => 'ach', 'Actinidia33083' => 'ach', 'Actinidia35762' => 'ach', 'Ah.02g110620' => 'amhyb', 'Ah.11g046390' => 'amhyb', 'AL1G31670' => 'aly', 'AL6G23730' => 'aly', 'AL7G14740' => 'aly', 'AL7G14750' => 'aly', 'AL7G14760' => 'aly', 'AL7G28220' => 'aly', 'AL8G24940' => 'aly', 'Aqoxy3G01665' => 'aox', 'Aqoxy3G02853' => 'aox', 'Aqoxy5G01513' => 'aox', 'Aqoxy5G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8SKA4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ75LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKDA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0LJZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7REX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZP4YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWX7I5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2QKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS0L9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPCD8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q161UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC7XCF' => 'arhy', 'AT1G19100' => 'ath', 'AT4G24970' => 'ath', 'AT4G36270' => 'ath', 'AT4G36280' => 'ath', 'AT4G36290' => 'ath', 'AT5G13130' => 'ath', 'AT5G50780' => 'ath', 'ATR0582G266' => 'atr', 'ATR0661G195' => 'atr', 'ATR1152G031' => 'atr', 'Atru.chr11.2382' => 'acertr', 'Atru.chr12.2337' => 'acertr', 'Atru.chr3.744' => 'acertr', 'Atru.chr6.1870' => 'acertr', 'Atru.chr9.2515' => 'acertr', 'AUR62004120' => 'cqu', 'AUR62005667' => 'cqu', 'AUR62007634' => 'cqu', 'AUR62008186' => 'cqu', 'AUR62008187' => 'cqu', 'AUR62008188' => 'cqu', 'AUR62027954' => 'cqu', 'AUR62028766' => 'cqu', 'AUR62028767' => 'cqu', 'AUR62028768' => 'cqu', 'AUR62028886' => 'cqu', 'AUR62029563' => 'cqu', 'AUR62038832' => 'cqu', 'BcaB01g04149' => 'bca', 'BcaB03g12940' => 'bca', 'BcaB03g13090' => 'bca', 'BcaB03g14466' => 'bca', 'BcaB05g24035' => 'bca', 'BcaC01g06050' => 'bca', 'BcaC04g19148' => 'bca', 'BcaC04g20761' => 'bca', 'BcaC06g32845' => 'bca', 'BcaC07g41274' => 'bca', 'BcaC09g50827' => 'bca', 'BcaNung00741' => 'bca', 'BcaNung00742' => 'bca', 'BcaNung01859' => 'bca', 'BcaNung03985' => 'bca', 'BcaNung03989' => 'bca', 'BcaNung05661' => 'bca', 'BolC1t00257H' => 'bol', 'BolC1t01956H' => 'bol', 'BolC2t06534H' => 'bol', 'BolC3t14334H' => 'bol', 'BolC5t30451H' => 'bol', 'BolC7t45880H' => 'bol', 'BolC7t46586H' => 'bol', 'BolC8t49301H' => 'bol', 'BolC8t51837H' => 'bol', 'BolC9t56822H' => 'bol', 'BolC9t59235H' => 'bol', 'BraA01t00234Z' => 'bra', 'BraA01t01563Z' => 'bra', 'BraA02t05147Z' => 'bra', 'BraA03t10947Z' => 'bra', 'BraA03t14633Z' => 'bra', 'BraA08t35112Z' => 'bra', 'BraA09t41330Z' => 'bra', 'BraA10t44570Z' => 'bra', 'C01p02670' => 'bna', 'C01p20260' => 'bna', 'C02p05890' => 'bna', 'C03p19530' => 'bna', 'C05p17470' => 'bna', 'C07p53900' => 'bna', 'C07p61630' => 'bna', 'C08p16800' => 'bna', 'C08p42810' => 'bna', 'C09p39480' => 'bna', 'C09p63980' => 'bna', 'CAN.G1001.7' => 'can', 'CAN.G1034.55' => 'can', 'CAN.G143.7' => 'can', 'CAN.G3340.1' => 'can', 'CAN.G358.19' => 'can', 'CAN.G373.2' => 'can', 'CAN.G674.16' => 'can', 'CAN.G674.17' => 'can', 'CAN.G674.18' => 'can', 'CAN.G732.2' => 'can', 'CAN.G732.3' => 'can', 'CAN.G993.39' => 'can', 'CANSAT01G2052' => 'cansat', 'CANSAT80G0070' => 'cansat', 'CANSAT80G0483' => 'cansat', 'CANSAT80G0625' => 'cansat', 'CARHR019690' => 'chi', 'CARHR080280' => 'chi', 'CARHR152750' => 'chi', 'CARHR152760' => 'chi', 'CARHR152770' => 'chi', 'CARHR200340' => 'chi', 'CARHR232370' => 'chi', 'CARHR244670' => 'chi', 'CARHR244680' => 'chi', 'CARHR257520' => 'chi', 'Carub.0001s1872' => 'cru', 'Carub.0006s1130' => 'cru', 'Carub.0007s0396' => 'cru', 'Carub.0007s0397' => 'cru', 'Carub.0007s1608' => 'cru', 'Carub.0008s1068' => 'cru', 'Carub.0008s1077' => 'cru', 'Ca_16158_v3' => 'car', 'Ca_17571_v3' => 'car', 'Ca_21936_v3' => 'car', 'Ca_22350_v3' => 'car', 'CBR_g22445' => 'cbr', 'CBR_g26290' => 'cbr', 'Cc04_g09610' => 'ccan', 'Cc04_g12280' => 'ccan', 'Cc07_g10230' => 'ccan', 'CDE02G0093' => 'cde', 'CDE02G0701' => 'cde', 'CDE04G1050' => 'cde', 'CDE05G1833' => 'cde', 'CDE05G3058' => 'cde', 'CDE05G3380' => 'cde', 'CDE06G0536' => 'cde', 'Cfa006923' => 'cfa', 'Cfa009402' => 'cfa', 'Cfa018751' => 'cfa', 'Cfa019164' => 'cfa', 'Cfa022935' => 'cfa', 'Ciclev10019081m.g' => 'ccl', 'Ciclev10025076m.g' => 'ccl', 'Ciclev10030712m.g' => 'ccl', 'Ciclev10033760m.g' => 'ccl', 'CiPaw.05G105600' => 'cil', 'CiPaw.08G136700' => 'cil', 'CiPaw.11G003900' => 'cil', 'CiPaw.11G023700' => 'cil', 'CiPaw.12G003700' => 'cil', 'ClCG06G017100' => 'cla', 'ClCG06G018110' => 'cla', 'ClCG07G008800' => 'cla', 'ClCG07G015330' => 'cla', 'COL.COLO4_13698' => 'col', 'COL.COLO4_16659' => 'col', 'COL.COLO4_21986' => 'col', 'COL.COLO4_24049' => 'col', 'COL.COLO4_29061' => 'col', 'COL.COLO4_29075' => 'col', 'COL.COLO4_30094' => 'col', 'Cpa.g.c33689' => 'cpa', 'Cpa.g.sc108.39' => 'cpa', 'Cpa.g.sc108.41' => 'cpa', 'Cpa.g.sc1163.1' => 'cpa', 'Cpa.g.sc4.155' => 'cpa', 'Cpa.g.sc6.194' => 'cpa', 'CsaV3_1G000340' => 'csa', 'CsaV3_1G001400' => 'csa', 'CsaV3_4G002220' => 'csa', 'CsaV3_4G005370' => 'csa', 'CSS0007487' => 'camsi', 'CSS0008066' => 'camsi', 'CSS0009120' => 'camsi', 'CSS0015512' => 'camsi', 'CSS0022409' => 'camsi', 'CSS0025358' => 'camsi', 'CSS0044547' => 'camsi', 'DCAR_013057' => 'dca', 'DCAR_015058' => 'dca', 'DCAR_016027' => 'dca', 'DCAR_017327' => 'dca', 'DCAR_020743' => 'dca', 'DCAR_026157' => 'dca', 'DCAR_032339' => 'dca', 'DCAR_032340' => 'dca', 'Dinv11200' => 'din', 'Dinv11201' => 'din', 'Dinv20631' => 'din', 'Dinv23182' => 'din', 'Dinv33466' => 'din', 'Dinv33583' => 'din', 'Dinv38565' => 'din', 'Duzib068G0200' => 'dzi', 'Duzib147G0132' => 'dzi', 'Duzib147G0635' => 'dzi', 'Duzib205G1670' => 'dzi', 'Duzib251G0606' => 'dzi', 'ECA232G3336' => 'eca', 'ECA232G3763' => 'eca', 'ECA232G4845' => 'eca', 'ECA234G1607' => 'eca', 'ECA246G0932' => 'eca', 'ECA247G0781' => 'eca', 'ECA247G1932' => 'eca', 'ECA247G2079' => 'eca', 'ECA247G3338' => 'eca', 'ECA247G4115' => 'eca', 'EL10Ac3g06552' => 'bvu', 'EL10Ac5g10721' => 'bvu', 'EL10Ac5g10722' => 'bvu', 'EL10Ac5g10723' => 'bvu', 'EL10Ac5g11361' => 'bvu', 'EL10Ac6g13553' => 'bvu', 'EL10As8g23872' => 'bvu', 'Eucgr.B00250' => 'egr', 'Eucgr.B00251' => 'egr', 'Eucgr.B03533' => 'egr', 'Eucgr.I02381' => 'egr', 'Eucgr.K02700' => 'egr', 'FAN02G0174' => 'fan', 'FAN02G3146' => 'fan', 'FAN04G1672' => 'fan', 'FAN04G2273' => 'fan', 'FAN05G2791' => 'fan', 'FAN05G4035' => 'fan', 'FAN07G0834' => 'fan', 'FAN08G1198' => 'fan', 'FAN09G4182' => 'fan', 'FAN12G0496' => 'fan', 'FAN13G1027' => 'fan', 'FAN13G2951' => 'fan', 'FAN14G0705' => 'fan', 'FAN14G0720' => 'fan', 'FAN17G0201' => 'fan', 'FAN17G2665' => 'fan', 'FAN18G1456' => 'fan', 'FAN18G1525' => 'fan', 'FAN18G3500' => 'fan', 'FAN28G2670' => 'fan', 'FvH4_1g12391' => 'fve', 'FvH4_4g23220' => 'fve', 'FvH4_5g08810' => 'fve', 'FvH4_5g28960' => 'fve', 'FvH4_6g42820' => 'fve', 'FvH4_6g51110' => 'fve', 'Glyma.02G051802' => 'gma', 'Glyma.04G185300' => 'gma', 'Glyma.05G202900' => 'gma', 'Glyma.08G010300' => 'gma', 'Glyma.16G131900' => 'gma', 'Glyma.17G087900' => 'gma', 'Gohir.A07G048600' => 'ghi', 'Gohir.A11G179000' => 'ghi', 'Gohir.A12G140900' => 'ghi', 'Gohir.A12G140950' => 'ghi', 'Gohir.A12G191700' => 'ghi', 'Gohir.A13G086300' => 'ghi', 'Gohir.D07G052900' => 'ghi', 'Gohir.D11G186600' => 'ghi', 'Gohir.D12G145575' => 'ghi', 'Gohir.D12G145650' => 'ghi', 'Gohir.D12G145725' => 'ghi', 'Gohir.D12G194050' => 'ghi', 'Gohir.D13G091800' => 'ghi', 'Gorai.001G055900' => 'gra', 'Gorai.007G198400' => 'gra', 'Gorai.008G157000' => 'gra', 'Gorai.008G157100' => 'gra', 'Gorai.008G208700' => 'gra', 'Gorai.010G138700' => 'gra', 'GSVIVG01000977001' => 'vvi', 'GSVIVG01007708001' => 'vvi', 'GSVIVG01008587001' => 'vvi', 'GSVIVG01018849001' => 'vvi', 'GSVIVG01032432001' => 'vvi', 'HanXRQChr02g0034131' => 'han', 'HanXRQChr02g0035981' => 'han', 'HanXRQChr02g0035991' => 'han', 'HanXRQChr05g0155611' => 'han', 'HanXRQChr05g0155621' => 'han', 'HanXRQChr08g0236501' => 'han', 'HanXRQChr09g0261321' => 'han', 'HanXRQChr09g0272081' => 'han', 'HanXRQChr10g0310741' => 'han', 'HanXRQChr11g0325591' => 'han', 'HanXRQChr12g0385691' => 'han', 'HanXRQChr13g0387801' => 'han', 'HanXRQChr15g0463011' => 'han', 'Haze_03826' => 'cav', 'Haze_03827' => 'cav', 'Haze_07183' => 'cav', 'Haze_07537' => 'cav', 'Haze_07539' => 'cav', 'Haze_12461' => 'cav', 'Haze_16115' => 'cav', 'Haze_16808' => 'cav', 'Haze_18531' => 'cav', 'Hma1.2p1_0046F.1_g026700' => 'hma', 'Hma1.2p1_0046F.1_g026710' => 'hma', 'Hma1.2p1_0168F.1_g074340' => 'hma', 'Hma1.2p1_0266F.1_g107030' => 'hma', 'Hma1.2p1_0266F.1_g107060' => 'hma', 'Hma1.2p1_0275F.1_g110510' => 'hma', 'Hma1.2p1_0592F.1_g185490' => 'hma', 'Hma1.2p1_0592F.1_g185500' => 'hma', 'Hma1.2p1_0592F.1_g185510' => 'hma', 'Hma1.2p1_0592F.1_g185520' => 'hma', 'Hma1.2p1_0592F.1_g185530' => 'hma', 'Hma1.2p1_0818F.1_g223450' => 'hma', 'HPP92_009708' => 'vpl', 'HPP92_009793' => 'vpl', 'HPP92_009796' => 'vpl', 'HPP92_009797' => 'vpl', 'HPP92_014940' => 'vpl', 'HPP92_014988' => 'vpl', 'Hund02463' => 'sun', 'Hund02760' => 'sun', 'Hund05071' => 'sun', 'Hund10108' => 'sun', 'Hund11204' => 'sun', 'Hund14016' => 'sun', 'Hund16464' => 'sun', 'Lalb_Chr09g0333391' => 'lal', 'Lalb_Chr11g0070461' => 'lal', 'Lalb_Chr12g0201671' => 'lal', 'Lalb_Chr13g0297161' => 'lal', 'Lj1g0002823' => 'lja', 'Lj3C1074T6' => 'lonja', 'Lj4A212T28' => 'lonja', 'Lj4g0005516' => 'lja', 'Lj4g0013705' => 'lja', 'Lj4g0027865' => 'lja', 'Lj5C92G16' => 'lonja', 'Lj5C92T12' => 'lonja', 'Lj7C596T3' => 'lonja', 'Lj9A446G59' => 'lonja', 'Lj9A482G21' => 'lonja', 'Lsat_1_v5_gn_1_28261' => 'lsa', 'Lsat_1_v5_gn_1_28281' => 'lsa', 'Lsat_1_v5_gn_1_32721' => 'lsa', 'Lsat_1_v5_gn_4_151760' => 'lsa', 'Lsat_1_v5_gn_4_2120' => 'lsa', 'Lsat_1_v5_gn_4_75761' => 'lsa', 'Lsat_1_v5_gn_5_10920' => 'lsa', 'Manes.02G099900' => 'mes', 'Manes.11G096200' => 'mes', 'Manes.12G007200' => 'mes', 'Manes.14G048300' => 'mes', 'Manes.17G114700' => 'mes', 'Mapoly0002s0070' => 'mpo', 'Mapoly0029s0099' => 'mpo', 'MBI07_g24742_MAGBIO' => 'mbi', 'MBI10_g27988_MAGBIO' => 'mbi', 'MBI11_g13057_MAGBIO' => 'mbi', 'MD02G1137200' => 'mdo', 'MD06G1137200' => 'mdo', 'MD07G1122300' => 'mdo', 'MD09G1078200' => 'mdo', 'MD13G1123700' => 'mdo', 'MD14G1151900' => 'mdo', 'MD17G1030900' => 'mdo', 'MD17G1068200' => 'mdo', 'MD17G1068600' => 'mdo', 'Medtr3g077540' => 'mtr', 'Medtr4g105530' => 'mtr', 'Medtr8g076580' => 'mtr', 'Medtr8g076590' => 'mtr', 'Medtr8g096410' => 'mtr', 'MELO3C016411.2' => 'cme', 'MELO3C017780.2' => 'cme', 'MELO3C022560.2' => 'cme', 'MELO3C026187.2' => 'cme', 'MELO3C026286.2' => 'cme', 'MELO3C032854.2' => 'cme', 'Migut.H02495' => 'egut', 'Migut.I00561' => 'egut', 'Migut.K01015' => 'egut', 'Migut.K01016' => 'egut', 'Migut.L00743' => 'egut', 'Migut.L00744' => 'egut', 'Migut.L00746' => 'egut', 'Migut.L00798' => 'egut', 'Migut.L00799' => 'egut', 'Migut.N02096' => 'egut', 'MSTRG.11259' => 'ama', 'MSTRG.23142' => 'ama', 'MSTRG.2499' => 'ama', 'Nitab4.5_0000003g0730' => 'nta', 'Nitab4.5_0000137g0020' => 'nta', 'Nitab4.5_0000721g0210' => 'nta', 'Nitab4.5_0000723g0050' => 'nta', 'Nitab4.5_0000913g0070' => 'nta', 'Nitab4.5_0001332g0040' => 'nta', 'Nitab4.5_0001771g0050' => 'nta', 'Nitab4.5_0001918g0050' => 'nta', 'Nitab4.5_0002686g0030' => 'nta', 'Nitab4.5_0003156g0020' => 'nta', 'Nitab4.5_0003383g0040' => 'nta', 'Nitab4.5_0003918g0010' => 'nta', 'Nitab4.5_0006760g0010' => 'nta', 'Nn1g05981' => 'nnu', 'Nn1g06288' => 'nnu', 'Nn3g16371' => 'nnu', 'Nn3g16786' => 'nnu', 'Nn4g22232' => 'nnu', 'Oeu005144.1' => 'oeu', 'Oeu005145.1' => 'oeu', 'Oeu011348.1' => 'oeu', 'Oeu016415.1' => 'oeu', 'Oeu023501.1' => 'oeu', 'Oeu044473.1' => 'oeu', 'Oeu048892.2' => 'oeu', 'Os01g0549200' => 'osa', 'Os02g0469300' => 'osa', 'Os04g0311100' => 'osa', 'Os06g0474900' => 'osa', 'Os10g0181700' => 'osa', 'Os11g0454800' => 'osa', 'Peaxi162Scf00037g00714' => 'pax', 'Peaxi162Scf00084g01217' => 'pax', 'Peaxi162Scf00257g00217' => 'pax', 'Peaxi162Scf00516g00215' => 'pax', 'Peaxi162Scf00689g00123' => 'pax', 'PGR044G2719' => 'pgr', 'PGR083G1360' => 'pgr', 'PGR102G2849' => 'pgr', 'PGR119G2534' => 'pgr', 'PGSC0003DMG400003538' => 'stu', 'PGSC0003DMG400028138' => 'stu', 'PGSC0003DMG400031732' => 'stu', 'PGSC0003DMG400038165' => 'stu', 'Phvul.002G284600' => 'pvu', 'Phvul.003G258200' => 'pvu', 'Phvul.009G176500' => 'pvu', 'Potri.003G167201' => 'ptr', 'Potri.005G118400' => 'ptr', 'Potri.012G089000' => 'ptr', 'Potri.012G102800' => 'ptr', 'Potri.015G079400' => 'ptr', 'Potri.015G100900' => 'ptr', 'Pp3c14_9810' => 'ppa', 'Pp3c15_10450' => 'ppa', 'Pp3c20_19150' => 'ppa', 'Pp3c23_12740' => 'ppa', 'Pp3c23_6310' => 'ppa', 'Pp3c24_3720' => 'ppa', 'Pp3c27_2580' => 'ppa', 'Pp3c9_8990' => 'ppa', 'PRCOL_00002854' => 'pco', 'Prupe.1G221200' => 'ppe', 'Prupe.3G289000' => 'ppe', 'Prupe.5G147000' => 'ppe', 'Prupe.6G157300' => 'ppe', 'Prupe.7G163400' => 'ppe', 'Psat0s2177g0040' => 'psa', 'Psat3g174760' => 'psa', 'Psat3g192160' => 'psa', 'Psat4g058520' => 'psa', 'Psat4g096840' => 'psa', 'Psat7g037320' => 'psa', 'PSO017G1274' => 'pso', 'PSO017G5166' => 'pso', 'PSO063G4558' => 'pso', 'PSO170G4458' => 'pso', 'PSO170G5005' => 'pso', 'PSO210G6156' => 'pso', 'PSO210G6635' => 'pso', 'PSO210G7397' => 'pso', 'PSO210G7700' => 'pso', 'PSO455G0035' => 'pso', 'PSO455G0180' => 'pso', 'PSO478G4515' => 'pso', 'PSO832G1305' => 'pso', 'PSO832G3489' => 'pso', 'QL02p075247' => 'qlo', 'QL03p051148' => 'qlo', 'QL05p010313' => 'qlo', 'QL06p034627' => 'qlo', 'QL10p001889' => 'qlo', 'QL10p010846' => 'qlo', 'RcHm_v2.0_Chr1g0350621' => 'rch', 'RcHm_v2.0_Chr1g0350641' => 'rch', 'RcHm_v2.0_Chr2g0092891' => 'rch', 'RcHm_v2.0_Chr2g0100251' => 'rch', 'RcHm_v2.0_Chr2g0158661' => 'rch', 'RcHm_v2.0_Chr2g0172741' => 'rch', 'RcHm_v2.0_Chr4g0429571' => 'rch', 'RcHm_v2.0_Chr5g0042471' => 'rch', 'RcHm_v2.0_Chr7g0189451' => 'rch', 'Rhsim08G0052000' => 'rsi', 'Rhsim08G0174400' => 'rsi', 'Rhsim08G0193200' => 'rsi', 'Rhsim10G0214800' => 'rsi', 'Rhsim10G0214900' => 'rsi', 'Rhsim10G0215000' => 'rsi', 'Rhsim12G0022900' => 'rsi', 'Rhsim12G0177500' => 'rsi', 'Rhsim12G0177700' => 'rsi', 'Sabra03G0122600' => 'sbr', 'Sabra05G0097400' => 'sbr', 'Sabra12G0064100' => 'sbr', 'Sabra15G0121300' => 'sbr', 'SalBow2G0642' => 'sbo', 'SalBow5G2667' => 'sbo', 'SalBow5G4873' => 'sbo', 'SalBow8G2395' => 'sbo', 'Sc03g0003290' => 'sci', 'Sc10g0010130' => 'sci', 'Sc22g0003650' => 'sci', 'Sed0001603' => 'sed', 'Sed0004259' => 'sed', 'Sed0006789' => 'sed', 'Sed0011838' => 'sed', 'Sed0012964' => 'sed', 'Sed0016383' => 'sed', 'Sed0019010' => 'sed', 'Sed0020188' => 'sed', 'SEGI_04702' => 'sgi', 'SEGI_17231' => 'sgi', 'SEGI_18877' => 'sgi', 'SEGI_25196' => 'sgi', 'SEGI_25515' => 'sgi', 'SEGI_28445' => 'sgi', 'SEGI_37452' => 'sgi', 'SGA_v2.0_scaffold188G40336' => 'sas', 'SGA_v2.0_scaffold228G43247' => 'sas', 'SGA_v2.0_scaffold280G46853' => 'sas', 'SGA_v2.0_scaffold34G13808' => 'sas', 'SGA_v2.0_scaffold40G15576' => 'sas', 'SGA_v2.0_scaffold611G53188' => 'sas', 'SGA_v2.0_scaffold78G25461' => 'sas', 'SGA_v2.0_scaffold90G27888' => 'sas', 'SHI08601' => 'shi', 'SHI08606' => 'shi', 'SHI17117' => 'shi', 'SHI17119' => 'shi', 'SMO118G0201' => 'smo', 'SMO169G0247' => 'smo', 'SMO176G0006' => 'smo', 'SMO176G0015' => 'smo', 'SMO202G0006' => 'smo', 'SMO240G0050' => 'smo', 'SMO286G0009' => 'smo', 'SMO338G0033' => 'smo', 'SMO356G0533' => 'smo', 'SMO364G0382' => 'smo', 'SMO367G0166' => 'smo', 'SMO367G1098' => 'smo', 'Solyc01g009920.3' => 'sly', 'Solyc01g099300.3' => 'sly', 'Solyc02g084700.3' => 'sly', 'Solyc03g097520.3' => 'sly', 'Solyc06g071580.3' => 'sly', 'Solyc10g081760.3' => 'sly', 'Sopen01g005480' => 'spe', 'Sopen01g042850' => 'spe', 'Sopen02g029370' => 'spe', 'Sopen03g028280' => 'spe', 'Sopen06g027870' => 'spe', 'Sopen10g032270' => 'spe', 'Sp5g18180' => 'spa', 'Sp6g12880' => 'spa', 'Sp6g30850' => 'spa', 'Sp7g22960' => 'spa', 'Sp7g34010' => 'spa', 'SpUn1326_0010' => 'spa', 'TAR371G0242' => 'tar', 'TAR622G0638' => 'tar', 'TAR628G1548' => 'tar', 'TAR629G1079' => 'tar', 'TAR629G3413' => 'tar', 'THA.LOC104804249' => 'tha', 'THA.LOC104808315' => 'tha', 'THA.LOC104809238' => 'tha', 'THA.LOC104825484' => 'tha', 'Thecc.01G025500' => 'tca', 'Thecc.03G015800' => 'tca', 'Thecc.03G018000' => 'tca', 'Thecc.03G134800' => 'tca', 'Thecc.04G014700' => 'tca', 'Thhalv10006991m.g' => 'esa', 'Thhalv10012707m.g' => 'esa', 'Thhalv10015739m.g' => 'esa', 'Thhalv10024553m.g' => 'esa', 'Thhalv10024673m.g' => 'esa', 'Thhalv10029187m.g' => 'esa', 'TPR.G12971' => 'tpr', 'TPR.G29396' => 'tpr', 'TPR.G33376' => 'tpr', 'TPR.G35508' => 'tpr', 'TPR.G35516' => 'tpr', 'TPR.G37317' => 'tpr', 'TPR.G37389' => 'tpr', 'TPR.G37523' => 'tpr', 'TPR.G559' => 'tpr', 'TWI14G0070' => 'twi', 'TWI14G0729' => 'twi', 'TWI18G0596' => 'twi', 'TWI39G0780' => 'twi', 'TWI39G0850' => 'twi', 'TWI73G1052' => 'twi', 'unitig_52.g17485' => 'ugi', 'unitig_61.g26355' => 'ugi', 'vmacro01040' => 'vma', 'vmacro16731' => 'vma', 'vmacro18270' => 'vma', 'vmacro19142' => 'vma', 'vmacro19407' => 'vma', 'vmacro19408' => 'vma', 'vmacro21899' => 'vma', 'vmacro21900' => 'vma', 'vmacro21901' => 'vma', 'VMungo0251G0490' => 'vmu', 'VMungo0251G1748' => 'vmu', 'VMungo1309G0421' => 'vmu', 'Zm00001eb086500' => 'zma', 'Zm00001eb150680' => 'zma', 'Zm00001eb162330' => 'zma', 'Zm00001eb203130' => 'zma', 'Zm00001eb369480' => 'zma', 'Zm00001eb382340' => 'zma', 'Zm00001eb416360' => 'zma' ), 'gf_id' => 'HOM05D000902', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000902' ), 'data_identifier' => 'HOM05D000902', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000902', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '663', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02470' => 'bna', 'A01p16260' => 'bna', 'A02p01680' => 'bna', 'A03p16600' => 'bna', 'A03p55660' => 'bna', 'A03p64160' => 'bna', 'A03p64170' => 'bna', 'A08p31900' => 'bna', 'A09p59530' => 'bna', 'A10p08230' => 'bna', 'A10p25090' => 'bna', 'Aa31LG3G7100' => 'aar', 'Aa31LG3G7110' => 'aar', 'Aa31LG6G13160' => 'aar', 'Aa31LG7G10770' => 'aar', 'Aa31LG7G3830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2723' => 'aag', 'Actinidia08045' => 'ach', 'Actinidia08888' => 'ach', 'Actinidia18333' => 'ach', 'Actinidia19334' => 'ach', 'Actinidia25552' => 'ach', 'Actinidia26089' => 'ach', 'Actinidia30615' => 'ach', 'Actinidia30616' => 'ach', 'Actinidia33083' => 'ach', 'Actinidia35762' => 'ach', 'Ah.02g110620' => 'amhyb', 'Ah.11g046390' => 'amhyb', 'AL1G31670' => 'aly', 'AL6G23730' => 'aly', 'AL7G14740' => 'aly', 'AL7G14750' => 'aly', 'AL7G14760' => 'aly', 'AL7G28220' => 'aly', 'AL8G24940' => 'aly', 'Aqoxy3G01665' => 'aox', 'Aqoxy3G02853' => 'aox', 'Aqoxy5G01513' => 'aox', 'Aqoxy5G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8SKA4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ75LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKDA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0LJZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7REX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZP4YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWX7I5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2QKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS0L9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPCD8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q161UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC7XCF' => 'arhy', 'AT1G19100' => 'ath', 'AT4G24970' => 'ath', 'AT4G36270' => 'ath', 'AT4G36280' => 'ath', 'AT4G36290' => 'ath', 'AT5G13130' => 'ath', 'AT5G50780' => 'ath', 'ATR0582G266' => 'atr', 'ATR0661G195' => 'atr', 'ATR1152G031' => 'atr', 'Atru.chr11.2382' => 'acertr', 'Atru.chr12.2337' => 'acertr', 'Atru.chr3.744' => 'acertr', 'Atru.chr6.1870' => 'acertr', 'Atru.chr9.2515' => 'acertr', 'AUR62004120' => 'cqu', 'AUR62005667' => 'cqu', 'AUR62007634' => 'cqu', 'AUR62008186' => 'cqu', 'AUR62008187' => 'cqu', 'AUR62008188' => 'cqu', 'AUR62027954' => 'cqu', 'AUR62028766' => 'cqu', 'AUR62028767' => 'cqu', 'AUR62028768' => 'cqu', 'AUR62028886' => 'cqu', 'AUR62029563' => 'cqu', 'AUR62038832' => 'cqu', 'BcaB01g04149' => 'bca', 'BcaB03g12940' => 'bca', 'BcaB03g13090' => 'bca', 'BcaB03g14466' => 'bca', 'BcaB05g24035' => 'bca', 'BcaC01g06050' => 'bca', 'BcaC04g19148' => 'bca', 'BcaC04g20761' => 'bca', 'BcaC06g32845' => 'bca', 'BcaC07g41274' => 'bca', 'BcaC09g50827' => 'bca', 'BcaNung00741' => 'bca', 'BcaNung00742' => 'bca', 'BcaNung01859' => 'bca', 'BcaNung03985' => 'bca', 'BcaNung03989' => 'bca', 'BcaNung05661' => 'bca', 'BolC1t00257H' => 'bol', 'BolC1t01956H' => 'bol', 'BolC2t06534H' => 'bol', 'BolC3t14334H' => 'bol', 'BolC5t30451H' => 'bol', 'BolC7t45880H' => 'bol', 'BolC7t46586H' => 'bol', 'BolC8t49301H' => 'bol', 'BolC8t51837H' => 'bol', 'BolC9t56822H' => 'bol', 'BolC9t59235H' => 'bol', 'BraA01t00234Z' => 'bra', 'BraA01t01563Z' => 'bra', 'BraA02t05147Z' => 'bra', 'BraA03t10947Z' => 'bra', 'BraA03t14633Z' => 'bra', 'BraA08t35112Z' => 'bra', 'BraA09t41330Z' => 'bra', 'BraA10t44570Z' => 'bra', 'C01p02670' => 'bna', 'C01p20260' => 'bna', 'C02p05890' => 'bna', 'C03p19530' => 'bna', 'C05p17470' => 'bna', 'C07p53900' => 'bna', 'C07p61630' => 'bna', 'C08p16800' => 'bna', 'C08p42810' => 'bna', 'C09p39480' => 'bna', 'C09p63980' => 'bna', 'CAN.G1001.7' => 'can', 'CAN.G1034.55' => 'can', 'CAN.G143.7' => 'can', 'CAN.G3340.1' => 'can', 'CAN.G358.19' => 'can', 'CAN.G373.2' => 'can', 'CAN.G674.16' => 'can', 'CAN.G674.17' => 'can', 'CAN.G674.18' => 'can', 'CAN.G732.2' => 'can', 'CAN.G732.3' => 'can', 'CAN.G993.39' => 'can', 'CANSAT01G2052' => 'cansat', 'CANSAT80G0070' => 'cansat', 'CANSAT80G0483' => 'cansat', 'CANSAT80G0625' => 'cansat', 'CARHR019690' => 'chi', 'CARHR080280' => 'chi', 'CARHR152750' => 'chi', 'CARHR152760' => 'chi', 'CARHR152770' => 'chi', 'CARHR200340' => 'chi', 'CARHR232370' => 'chi', 'CARHR244670' => 'chi', 'CARHR244680' => 'chi', 'CARHR257520' => 'chi', 'Carub.0001s1872' => 'cru', 'Carub.0006s1130' => 'cru', 'Carub.0007s0396' => 'cru', 'Carub.0007s0397' => 'cru', 'Carub.0007s1608' => 'cru', 'Carub.0008s1068' => 'cru', 'Carub.0008s1077' => 'cru', 'Ca_16158_v3' => 'car', 'Ca_17571_v3' => 'car', 'Ca_21936_v3' => 'car', 'Ca_22350_v3' => 'car', 'CBR_g22445' => 'cbr', 'CBR_g26290' => 'cbr', 'Cc04_g09610' => 'ccan', 'Cc04_g12280' => 'ccan', 'Cc07_g10230' => 'ccan', 'CDE02G0093' => 'cde', 'CDE02G0701' => 'cde', 'CDE04G1050' => 'cde', 'CDE05G1833' => 'cde', 'CDE05G3058' => 'cde', 'CDE05G3380' => 'cde', 'CDE06G0536' => 'cde', 'Cfa006923' => 'cfa', 'Cfa009402' => 'cfa', 'Cfa018751' => 'cfa', 'Cfa019164' => 'cfa', 'Cfa022935' => 'cfa', 'Ciclev10019081m.g' => 'ccl', 'Ciclev10025076m.g' => 'ccl', 'Ciclev10030712m.g' => 'ccl', 'Ciclev10033760m.g' => 'ccl', 'CiPaw.05G105600' => 'cil', 'CiPaw.08G136700' => 'cil', 'CiPaw.11G003900' => 'cil', 'CiPaw.11G023700' => 'cil', 'CiPaw.12G003700' => 'cil', 'ClCG06G017100' => 'cla', 'ClCG06G018110' => 'cla', 'ClCG07G008800' => 'cla', 'ClCG07G015330' => 'cla', 'COL.COLO4_13698' => 'col', 'COL.COLO4_16659' => 'col', 'COL.COLO4_21986' => 'col', 'COL.COLO4_24049' => 'col', 'COL.COLO4_29061' => 'col', 'COL.COLO4_29075' => 'col', 'COL.COLO4_30094' => 'col', 'Cpa.g.c33689' => 'cpa', 'Cpa.g.sc108.39' => 'cpa', 'Cpa.g.sc108.41' => 'cpa', 'Cpa.g.sc1163.1' => 'cpa', 'Cpa.g.sc4.155' => 'cpa', 'Cpa.g.sc6.194' => 'cpa', 'CsaV3_1G000340' => 'csa', 'CsaV3_1G001400' => 'csa', 'CsaV3_4G002220' => 'csa', 'CsaV3_4G005370' => 'csa', 'CSS0007487' => 'camsi', 'CSS0008066' => 'camsi', 'CSS0009120' => 'camsi', 'CSS0015512' => 'camsi', 'CSS0022409' => 'camsi', 'CSS0025358' => 'camsi', 'CSS0044547' => 'camsi', 'DCAR_013057' => 'dca', 'DCAR_015058' => 'dca', 'DCAR_016027' => 'dca', 'DCAR_017327' => 'dca', 'DCAR_020743' => 'dca', 'DCAR_026157' => 'dca', 'DCAR_032339' => 'dca', 'DCAR_032340' => 'dca', 'Dinv11200' => 'din', 'Dinv11201' => 'din', 'Dinv20631' => 'din', 'Dinv23182' => 'din', 'Dinv33466' => 'din', 'Dinv33583' => 'din', 'Dinv38565' => 'din', 'Duzib068G0200' => 'dzi', 'Duzib147G0132' => 'dzi', 'Duzib147G0635' => 'dzi', 'Duzib205G1670' => 'dzi', 'Duzib251G0606' => 'dzi', 'ECA232G3336' => 'eca', 'ECA232G3763' => 'eca', 'ECA232G4845' => 'eca', 'ECA234G1607' => 'eca', 'ECA246G0932' => 'eca', 'ECA247G0781' => 'eca', 'ECA247G1932' => 'eca', 'ECA247G2079' => 'eca', 'ECA247G3338' => 'eca', 'ECA247G4115' => 'eca', 'EL10Ac3g06552' => 'bvu', 'EL10Ac5g10721' => 'bvu', 'EL10Ac5g10722' => 'bvu', 'EL10Ac5g10723' => 'bvu', 'EL10Ac5g11361' => 'bvu', 'EL10Ac6g13553' => 'bvu', 'EL10As8g23872' => 'bvu', 'Eucgr.B00250' => 'egr', 'Eucgr.B00251' => 'egr', 'Eucgr.B03533' => 'egr', 'Eucgr.I02381' => 'egr', 'Eucgr.K02700' => 'egr', 'FAN02G0174' => 'fan', 'FAN02G3146' => 'fan', 'FAN04G1672' => 'fan', 'FAN04G2273' => 'fan', 'FAN05G2791' => 'fan', 'FAN05G4035' => 'fan', 'FAN07G0834' => 'fan', 'FAN08G1198' => 'fan', 'FAN09G4182' => 'fan', 'FAN12G0496' => 'fan', 'FAN13G1027' => 'fan', 'FAN13G2951' => 'fan', 'FAN14G0705' => 'fan', 'FAN14G0720' => 'fan', 'FAN17G0201' => 'fan', 'FAN17G2665' => 'fan', 'FAN18G1456' => 'fan', 'FAN18G1525' => 'fan', 'FAN18G3500' => 'fan', 'FAN28G2670' => 'fan', 'FvH4_1g12391' => 'fve', 'FvH4_4g23220' => 'fve', 'FvH4_5g08810' => 'fve', 'FvH4_5g28960' => 'fve', 'FvH4_6g42820' => 'fve', 'FvH4_6g51110' => 'fve', 'Glyma.02G051802' => 'gma', 'Glyma.04G185300' => 'gma', 'Glyma.05G202900' => 'gma', 'Glyma.08G010300' => 'gma', 'Glyma.16G131900' => 'gma', 'Glyma.17G087900' => 'gma', 'Gohir.A07G048600' => 'ghi', 'Gohir.A11G179000' => 'ghi', 'Gohir.A12G140900' => 'ghi', 'Gohir.A12G140950' => 'ghi', 'Gohir.A12G191700' => 'ghi', 'Gohir.A13G086300' => 'ghi', 'Gohir.D07G052900' => 'ghi', 'Gohir.D11G186600' => 'ghi', 'Gohir.D12G145575' => 'ghi', 'Gohir.D12G145650' => 'ghi', 'Gohir.D12G145725' => 'ghi', 'Gohir.D12G194050' => 'ghi', 'Gohir.D13G091800' => 'ghi', 'Gorai.001G055900' => 'gra', 'Gorai.007G198400' => 'gra', 'Gorai.008G157000' => 'gra', 'Gorai.008G157100' => 'gra', 'Gorai.008G208700' => 'gra', 'Gorai.010G138700' => 'gra', 'GSVIVG01000977001' => 'vvi', 'GSVIVG01007708001' => 'vvi', 'GSVIVG01008587001' => 'vvi', 'GSVIVG01018849001' => 'vvi', 'GSVIVG01032432001' => 'vvi', 'HanXRQChr02g0034131' => 'han', 'HanXRQChr02g0035981' => 'han', 'HanXRQChr02g0035991' => 'han', 'HanXRQChr05g0155611' => 'han', 'HanXRQChr05g0155621' => 'han', 'HanXRQChr08g0236501' => 'han', 'HanXRQChr09g0261321' => 'han', 'HanXRQChr09g0272081' => 'han', 'HanXRQChr10g0310741' => 'han', 'HanXRQChr11g0325591' => 'han', 'HanXRQChr12g0385691' => 'han', 'HanXRQChr13g0387801' => 'han', 'HanXRQChr15g0463011' => 'han', 'Haze_03826' => 'cav', 'Haze_03827' => 'cav', 'Haze_07183' => 'cav', 'Haze_07537' => 'cav', 'Haze_07539' => 'cav', 'Haze_12461' => 'cav', 'Haze_16115' => 'cav', 'Haze_16808' => 'cav', 'Haze_18531' => 'cav', 'Hma1.2p1_0046F.1_g026700' => 'hma', 'Hma1.2p1_0046F.1_g026710' => 'hma', 'Hma1.2p1_0168F.1_g074340' => 'hma', 'Hma1.2p1_0266F.1_g107030' => 'hma', 'Hma1.2p1_0266F.1_g107060' => 'hma', 'Hma1.2p1_0275F.1_g110510' => 'hma', 'Hma1.2p1_0592F.1_g185490' => 'hma', 'Hma1.2p1_0592F.1_g185500' => 'hma', 'Hma1.2p1_0592F.1_g185510' => 'hma', 'Hma1.2p1_0592F.1_g185520' => 'hma', 'Hma1.2p1_0592F.1_g185530' => 'hma', 'Hma1.2p1_0818F.1_g223450' => 'hma', 'HPP92_009708' => 'vpl', 'HPP92_009793' => 'vpl', 'HPP92_009796' => 'vpl', 'HPP92_009797' => 'vpl', 'HPP92_014940' => 'vpl', 'HPP92_014988' => 'vpl', 'Hund02463' => 'sun', 'Hund02760' => 'sun', 'Hund05071' => 'sun', 'Hund10108' => 'sun', 'Hund11204' => 'sun', 'Hund14016' => 'sun', 'Hund16464' => 'sun', 'Lalb_Chr09g0333391' => 'lal', 'Lalb_Chr11g0070461' => 'lal', 'Lalb_Chr12g0201671' => 'lal', 'Lalb_Chr13g0297161' => 'lal', 'Lj1g0002823' => 'lja', 'Lj3C1074T6' => 'lonja', 'Lj4A212T28' => 'lonja', 'Lj4g0005516' => 'lja', 'Lj4g0013705' => 'lja', 'Lj4g0027865' => 'lja', 'Lj5C92G16' => 'lonja', 'Lj5C92T12' => 'lonja', 'Lj7C596T3' => 'lonja', 'Lj9A446G59' => 'lonja', 'Lj9A482G21' => 'lonja', 'Lsat_1_v5_gn_1_28261' => 'lsa', 'Lsat_1_v5_gn_1_28281' => 'lsa', 'Lsat_1_v5_gn_1_32721' => 'lsa', 'Lsat_1_v5_gn_4_151760' => 'lsa', 'Lsat_1_v5_gn_4_2120' => 'lsa', 'Lsat_1_v5_gn_4_75761' => 'lsa', 'Lsat_1_v5_gn_5_10920' => 'lsa', 'Manes.02G099900' => 'mes', 'Manes.11G096200' => 'mes', 'Manes.12G007200' => 'mes', 'Manes.14G048300' => 'mes', 'Manes.17G114700' => 'mes', 'Mapoly0002s0070' => 'mpo', 'Mapoly0029s0099' => 'mpo', 'MBI07_g24742_MAGBIO' => 'mbi', 'MBI10_g27988_MAGBIO' => 'mbi', 'MBI11_g13057_MAGBIO' => 'mbi', 'MD02G1137200' => 'mdo', 'MD06G1137200' => 'mdo', 'MD07G1122300' => 'mdo', 'MD09G1078200' => 'mdo', 'MD13G1123700' => 'mdo', 'MD14G1151900' => 'mdo', 'MD17G1030900' => 'mdo', 'MD17G1068200' => 'mdo', 'MD17G1068600' => 'mdo', 'Medtr3g077540' => 'mtr', 'Medtr4g105530' => 'mtr', 'Medtr8g076580' => 'mtr', 'Medtr8g076590' => 'mtr', 'Medtr8g096410' => 'mtr', 'MELO3C016411.2' => 'cme', 'MELO3C017780.2' => 'cme', 'MELO3C022560.2' => 'cme', 'MELO3C026187.2' => 'cme', 'MELO3C026286.2' => 'cme', 'MELO3C032854.2' => 'cme', 'Migut.H02495' => 'egut', 'Migut.I00561' => 'egut', 'Migut.K01015' => 'egut', 'Migut.K01016' => 'egut', 'Migut.L00743' => 'egut', 'Migut.L00744' => 'egut', 'Migut.L00746' => 'egut', 'Migut.L00798' => 'egut', 'Migut.L00799' => 'egut', 'Migut.N02096' => 'egut', 'MSTRG.11259' => 'ama', 'MSTRG.23142' => 'ama', 'MSTRG.2499' => 'ama', 'Nitab4.5_0000003g0730' => 'nta', 'Nitab4.5_0000137g0020' => 'nta', 'Nitab4.5_0000721g0210' => 'nta', 'Nitab4.5_0000723g0050' => 'nta', 'Nitab4.5_0000913g0070' => 'nta', 'Nitab4.5_0001332g0040' => 'nta', 'Nitab4.5_0001771g0050' => 'nta', 'Nitab4.5_0001918g0050' => 'nta', 'Nitab4.5_0002686g0030' => 'nta', 'Nitab4.5_0003156g0020' => 'nta', 'Nitab4.5_0003383g0040' => 'nta', 'Nitab4.5_0003918g0010' => 'nta', 'Nitab4.5_0006760g0010' => 'nta', 'Nn1g05981' => 'nnu', 'Nn1g06288' => 'nnu', 'Nn3g16371' => 'nnu', 'Nn3g16786' => 'nnu', 'Nn4g22232' => 'nnu', 'Oeu005144.1' => 'oeu', 'Oeu005145.1' => 'oeu', 'Oeu011348.1' => 'oeu', 'Oeu016415.1' => 'oeu', 'Oeu023501.1' => 'oeu', 'Oeu044473.1' => 'oeu', 'Oeu048892.2' => 'oeu', 'Os01g0549200' => 'osa', 'Os02g0469300' => 'osa', 'Os04g0311100' => 'osa', 'Os06g0474900' => 'osa', 'Os10g0181700' => 'osa', 'Os11g0454800' => 'osa', 'Peaxi162Scf00037g00714' => 'pax', 'Peaxi162Scf00084g01217' => 'pax', 'Peaxi162Scf00257g00217' => 'pax', 'Peaxi162Scf00516g00215' => 'pax', 'Peaxi162Scf00689g00123' => 'pax', 'PGR044G2719' => 'pgr', 'PGR083G1360' => 'pgr', 'PGR102G2849' => 'pgr', 'PGR119G2534' => 'pgr', 'PGSC0003DMG400003538' => 'stu', 'PGSC0003DMG400028138' => 'stu', 'PGSC0003DMG400031732' => 'stu', 'PGSC0003DMG400038165' => 'stu', 'Phvul.002G284600' => 'pvu', 'Phvul.003G258200' => 'pvu', 'Phvul.009G176500' => 'pvu', 'Potri.003G167201' => 'ptr', 'Potri.005G118400' => 'ptr', 'Potri.012G089000' => 'ptr', 'Potri.012G102800' => 'ptr', 'Potri.015G079400' => 'ptr', 'Potri.015G100900' => 'ptr', 'Pp3c14_9810' => 'ppa', 'Pp3c15_10450' => 'ppa', 'Pp3c20_19150' => 'ppa', 'Pp3c23_12740' => 'ppa', 'Pp3c23_6310' => 'ppa', 'Pp3c24_3720' => 'ppa', 'Pp3c27_2580' => 'ppa', 'Pp3c9_8990' => 'ppa', 'PRCOL_00002854' => 'pco', 'Prupe.1G221200' => 'ppe', 'Prupe.3G289000' => 'ppe', 'Prupe.5G147000' => 'ppe', 'Prupe.6G157300' => 'ppe', 'Prupe.7G163400' => 'ppe', 'Psat0s2177g0040' => 'psa', 'Psat3g174760' => 'psa', 'Psat3g192160' => 'psa', 'Psat4g058520' => 'psa', 'Psat4g096840' => 'psa', 'Psat7g037320' => 'psa', 'PSO017G1274' => 'pso', 'PSO017G5166' => 'pso', 'PSO063G4558' => 'pso', 'PSO170G4458' => 'pso', 'PSO170G5005' => 'pso', 'PSO210G6156' => 'pso', 'PSO210G6635' => 'pso', 'PSO210G7397' => 'pso', 'PSO210G7700' => 'pso', 'PSO455G0035' => 'pso', 'PSO455G0180' => 'pso', 'PSO478G4515' => 'pso', 'PSO832G1305' => 'pso', 'PSO832G3489' => 'pso', 'QL02p075247' => 'qlo', 'QL03p051148' => 'qlo', 'QL05p010313' => 'qlo', 'QL06p034627' => 'qlo', 'QL10p001889' => 'qlo', 'QL10p010846' => 'qlo', 'RcHm_v2.0_Chr1g0350621' => 'rch', 'RcHm_v2.0_Chr1g0350641' => 'rch', 'RcHm_v2.0_Chr2g0092891' => 'rch', 'RcHm_v2.0_Chr2g0100251' => 'rch', 'RcHm_v2.0_Chr2g0158661' => 'rch', 'RcHm_v2.0_Chr2g0172741' => 'rch', 'RcHm_v2.0_Chr4g0429571' => 'rch', 'RcHm_v2.0_Chr5g0042471' => 'rch', 'RcHm_v2.0_Chr7g0189451' => 'rch', 'Rhsim08G0052000' => 'rsi', 'Rhsim08G0174400' => 'rsi', 'Rhsim08G0193200' => 'rsi', 'Rhsim10G0214800' => 'rsi', 'Rhsim10G0214900' => 'rsi', 'Rhsim10G0215000' => 'rsi', 'Rhsim12G0022900' => 'rsi', 'Rhsim12G0177500' => 'rsi', 'Rhsim12G0177700' => 'rsi', 'Sabra03G0122600' => 'sbr', 'Sabra05G0097400' => 'sbr', 'Sabra12G0064100' => 'sbr', 'Sabra15G0121300' => 'sbr', 'SalBow2G0642' => 'sbo', 'SalBow5G2667' => 'sbo', 'SalBow5G4873' => 'sbo', 'SalBow8G2395' => 'sbo', 'Sc03g0003290' => 'sci', 'Sc10g0010130' => 'sci', 'Sc22g0003650' => 'sci', 'Sed0001603' => 'sed', 'Sed0004259' => 'sed', 'Sed0006789' => 'sed', 'Sed0011838' => 'sed', 'Sed0012964' => 'sed', 'Sed0016383' => 'sed', 'Sed0019010' => 'sed', 'Sed0020188' => 'sed', 'SEGI_04702' => 'sgi', 'SEGI_17231' => 'sgi', 'SEGI_18877' => 'sgi', 'SEGI_25196' => 'sgi', 'SEGI_25515' => 'sgi', 'SEGI_28445' => 'sgi', 'SEGI_37452' => 'sgi', 'SGA_v2.0_scaffold188G40336' => 'sas', 'SGA_v2.0_scaffold228G43247' => 'sas', 'SGA_v2.0_scaffold280G46853' => 'sas', 'SGA_v2.0_scaffold34G13808' => 'sas', 'SGA_v2.0_scaffold40G15576' => 'sas', 'SGA_v2.0_scaffold611G53188' => 'sas', 'SGA_v2.0_scaffold78G25461' => 'sas', 'SGA_v2.0_scaffold90G27888' => 'sas', 'SHI08601' => 'shi', 'SHI08606' => 'shi', 'SHI17117' => 'shi', 'SHI17119' => 'shi', 'SMO118G0201' => 'smo', 'SMO169G0247' => 'smo', 'SMO176G0006' => 'smo', 'SMO176G0015' => 'smo', 'SMO202G0006' => 'smo', 'SMO240G0050' => 'smo', 'SMO286G0009' => 'smo', 'SMO338G0033' => 'smo', 'SMO356G0533' => 'smo', 'SMO364G0382' => 'smo', 'SMO367G0166' => 'smo', 'SMO367G1098' => 'smo', 'Solyc01g009920.3' => 'sly', 'Solyc01g099300.3' => 'sly', 'Solyc02g084700.3' => 'sly', 'Solyc03g097520.3' => 'sly', 'Solyc06g071580.3' => 'sly', 'Solyc10g081760.3' => 'sly', 'Sopen01g005480' => 'spe', 'Sopen01g042850' => 'spe', 'Sopen02g029370' => 'spe', 'Sopen03g028280' => 'spe', 'Sopen06g027870' => 'spe', 'Sopen10g032270' => 'spe', 'Sp5g18180' => 'spa', 'Sp6g12880' => 'spa', 'Sp6g30850' => 'spa', 'Sp7g22960' => 'spa', 'Sp7g34010' => 'spa', 'SpUn1326_0010' => 'spa', 'TAR371G0242' => 'tar', 'TAR622G0638' => 'tar', 'TAR628G1548' => 'tar', 'TAR629G1079' => 'tar', 'TAR629G3413' => 'tar', 'THA.LOC104804249' => 'tha', 'THA.LOC104808315' => 'tha', 'THA.LOC104809238' => 'tha', 'THA.LOC104825484' => 'tha', 'Thecc.01G025500' => 'tca', 'Thecc.03G015800' => 'tca', 'Thecc.03G018000' => 'tca', 'Thecc.03G134800' => 'tca', 'Thecc.04G014700' => 'tca', 'Thhalv10006991m.g' => 'esa', 'Thhalv10012707m.g' => 'esa', 'Thhalv10015739m.g' => 'esa', 'Thhalv10024553m.g' => 'esa', 'Thhalv10024673m.g' => 'esa', 'Thhalv10029187m.g' => 'esa', 'TPR.G12971' => 'tpr', 'TPR.G29396' => 'tpr', 'TPR.G33376' => 'tpr', 'TPR.G35508' => 'tpr', 'TPR.G35516' => 'tpr', 'TPR.G37317' => 'tpr', 'TPR.G37389' => 'tpr', 'TPR.G37523' => 'tpr', 'TPR.G559' => 'tpr', 'TWI14G0070' => 'twi', 'TWI14G0729' => 'twi', 'TWI18G0596' => 'twi', 'TWI39G0780' => 'twi', 'TWI39G0850' => 'twi', 'TWI73G1052' => 'twi', 'unitig_52.g17485' => 'ugi', 'unitig_61.g26355' => 'ugi', 'vmacro01040' => 'vma', 'vmacro16731' => 'vma', 'vmacro18270' => 'vma', 'vmacro19142' => 'vma', 'vmacro19407' => 'vma', 'vmacro19408' => 'vma', 'vmacro21899' => 'vma', 'vmacro21900' => 'vma', 'vmacro21901' => 'vma', 'VMungo0251G0490' => 'vmu', 'VMungo0251G1748' => 'vmu', 'VMungo1309G0421' => 'vmu', 'Zm00001eb086500' => 'zma', 'Zm00001eb150680' => 'zma', 'Zm00001eb162330' => 'zma', 'Zm00001eb203130' => 'zma', 'Zm00001eb369480' => 'zma', 'Zm00001eb382340' => 'zma', 'Zm00001eb416360' => 'zma' ) $gf_id = 'HOM05D000902' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000902' ) $data_identifier = 'HOM05D000902' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 13, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 10, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 6, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 9, 'hma' => (int) 12, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 4, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 6, 'ppa' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 6, 'rch' => (int) 9, 'rsi' => (int) 9, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 12, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 3, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416360' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000902', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '663', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02470' => 'bna', 'A01p16260' => 'bna', 'A02p01680' => 'bna', 'A03p16600' => 'bna', 'A03p55660' => 'bna', 'A03p64160' => 'bna', 'A03p64170' => 'bna', 'A08p31900' => 'bna', 'A09p59530' => 'bna', 'A10p08230' => 'bna', 'A10p25090' => 'bna', 'Aa31LG3G7100' => 'aar', 'Aa31LG3G7110' => 'aar', 'Aa31LG6G13160' => 'aar', 'Aa31LG7G10770' => 'aar', 'Aa31LG7G3830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2723' => 'aag', 'Actinidia08045' => 'ach', 'Actinidia08888' => 'ach', 'Actinidia18333' => 'ach', 'Actinidia19334' => 'ach', 'Actinidia25552' => 'ach', 'Actinidia26089' => 'ach', 'Actinidia30615' => 'ach', 'Actinidia30616' => 'ach', 'Actinidia33083' => 'ach', 'Actinidia35762' => 'ach', 'Ah.02g110620' => 'amhyb', 'Ah.11g046390' => 'amhyb', 'AL1G31670' => 'aly', 'AL6G23730' => 'aly', 'AL7G14740' => 'aly', 'AL7G14750' => 'aly', 'AL7G14760' => 'aly', 'AL7G28220' => 'aly', 'AL8G24940' => 'aly', 'Aqoxy3G01665' => 'aox', 'Aqoxy3G02853' => 'aox', 'Aqoxy5G01513' => 'aox', 'Aqoxy5G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8SKA4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ75LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKDA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0LJZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7REX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZP4YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWX7I5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2QKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS0L9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPCD8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q161UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC7XCF' => 'arhy', 'AT1G19100' => 'ath', 'AT4G24970' => 'ath', 'AT4G36270' => 'ath', 'AT4G36280' => 'ath', 'AT4G36290' => 'ath', 'AT5G13130' => 'ath', 'AT5G50780' => 'ath', 'ATR0582G266' => 'atr', 'ATR0661G195' => 'atr', 'ATR1152G031' => 'atr', 'Atru.chr11.2382' => 'acertr', 'Atru.chr12.2337' => 'acertr', 'Atru.chr3.744' => 'acertr', 'Atru.chr6.1870' => 'acertr', 'Atru.chr9.2515' => 'acertr', 'AUR62004120' => 'cqu', 'AUR62005667' => 'cqu', 'AUR62007634' => 'cqu', 'AUR62008186' => 'cqu', 'AUR62008187' => 'cqu', 'AUR62008188' => 'cqu', 'AUR62027954' => 'cqu', 'AUR62028766' => 'cqu', 'AUR62028767' => 'cqu', 'AUR62028768' => 'cqu', 'AUR62028886' => 'cqu', 'AUR62029563' => 'cqu', 'AUR62038832' => 'cqu', 'BcaB01g04149' => 'bca', 'BcaB03g12940' => 'bca', 'BcaB03g13090' => 'bca', 'BcaB03g14466' => 'bca', 'BcaB05g24035' => 'bca', 'BcaC01g06050' => 'bca', 'BcaC04g19148' => 'bca', 'BcaC04g20761' => 'bca', 'BcaC06g32845' => 'bca', 'BcaC07g41274' => 'bca', 'BcaC09g50827' => 'bca', 'BcaNung00741' => 'bca', 'BcaNung00742' => 'bca', 'BcaNung01859' => 'bca', 'BcaNung03985' => 'bca', 'BcaNung03989' => 'bca', 'BcaNung05661' => 'bca', 'BolC1t00257H' => 'bol', 'BolC1t01956H' => 'bol', 'BolC2t06534H' => 'bol', 'BolC3t14334H' => 'bol', 'BolC5t30451H' => 'bol', 'BolC7t45880H' => 'bol', 'BolC7t46586H' => 'bol', 'BolC8t49301H' => 'bol', 'BolC8t51837H' => 'bol', 'BolC9t56822H' => 'bol', 'BolC9t59235H' => 'bol', 'BraA01t00234Z' => 'bra', 'BraA01t01563Z' => 'bra', 'BraA02t05147Z' => 'bra', 'BraA03t10947Z' => 'bra', 'BraA03t14633Z' => 'bra', 'BraA08t35112Z' => 'bra', 'BraA09t41330Z' => 'bra', 'BraA10t44570Z' => 'bra', 'C01p02670' => 'bna', 'C01p20260' => 'bna', 'C02p05890' => 'bna', 'C03p19530' => 'bna', 'C05p17470' => 'bna', 'C07p53900' => 'bna', 'C07p61630' => 'bna', 'C08p16800' => 'bna', 'C08p42810' => 'bna', 'C09p39480' => 'bna', 'C09p63980' => 'bna', 'CAN.G1001.7' => 'can', 'CAN.G1034.55' => 'can', 'CAN.G143.7' => 'can', 'CAN.G3340.1' => 'can', 'CAN.G358.19' => 'can', 'CAN.G373.2' => 'can', 'CAN.G674.16' => 'can', 'CAN.G674.17' => 'can', 'CAN.G674.18' => 'can', 'CAN.G732.2' => 'can', 'CAN.G732.3' => 'can', 'CAN.G993.39' => 'can', 'CANSAT01G2052' => 'cansat', 'CANSAT80G0070' => 'cansat', 'CANSAT80G0483' => 'cansat', 'CANSAT80G0625' => 'cansat', 'CARHR019690' => 'chi', 'CARHR080280' => 'chi', 'CARHR152750' => 'chi', 'CARHR152760' => 'chi', 'CARHR152770' => 'chi', 'CARHR200340' => 'chi', 'CARHR232370' => 'chi', 'CARHR244670' => 'chi', 'CARHR244680' => 'chi', 'CARHR257520' => 'chi', 'Carub.0001s1872' => 'cru', 'Carub.0006s1130' => 'cru', 'Carub.0007s0396' => 'cru', 'Carub.0007s0397' => 'cru', 'Carub.0007s1608' => 'cru', 'Carub.0008s1068' => 'cru', 'Carub.0008s1077' => 'cru', 'Ca_16158_v3' => 'car', 'Ca_17571_v3' => 'car', 'Ca_21936_v3' => 'car', 'Ca_22350_v3' => 'car', 'CBR_g22445' => 'cbr', 'CBR_g26290' => 'cbr', 'Cc04_g09610' => 'ccan', 'Cc04_g12280' => 'ccan', 'Cc07_g10230' => 'ccan', 'CDE02G0093' => 'cde', 'CDE02G0701' => 'cde', 'CDE04G1050' => 'cde', 'CDE05G1833' => 'cde', 'CDE05G3058' => 'cde', 'CDE05G3380' => 'cde', 'CDE06G0536' => 'cde', 'Cfa006923' => 'cfa', 'Cfa009402' => 'cfa', 'Cfa018751' => 'cfa', 'Cfa019164' => 'cfa', 'Cfa022935' => 'cfa', 'Ciclev10019081m.g' => 'ccl', 'Ciclev10025076m.g' => 'ccl', 'Ciclev10030712m.g' => 'ccl', 'Ciclev10033760m.g' => 'ccl', 'CiPaw.05G105600' => 'cil', 'CiPaw.08G136700' => 'cil', 'CiPaw.11G003900' => 'cil', 'CiPaw.11G023700' => 'cil', 'CiPaw.12G003700' => 'cil', 'ClCG06G017100' => 'cla', 'ClCG06G018110' => 'cla', 'ClCG07G008800' => 'cla', 'ClCG07G015330' => 'cla', 'COL.COLO4_13698' => 'col', 'COL.COLO4_16659' => 'col', 'COL.COLO4_21986' => 'col', 'COL.COLO4_24049' => 'col', 'COL.COLO4_29061' => 'col', 'COL.COLO4_29075' => 'col', 'COL.COLO4_30094' => 'col', 'Cpa.g.c33689' => 'cpa', 'Cpa.g.sc108.39' => 'cpa', 'Cpa.g.sc108.41' => 'cpa', 'Cpa.g.sc1163.1' => 'cpa', 'Cpa.g.sc4.155' => 'cpa', 'Cpa.g.sc6.194' => 'cpa', 'CsaV3_1G000340' => 'csa', 'CsaV3_1G001400' => 'csa', 'CsaV3_4G002220' => 'csa', 'CsaV3_4G005370' => 'csa', 'CSS0007487' => 'camsi', 'CSS0008066' => 'camsi', 'CSS0009120' => 'camsi', 'CSS0015512' => 'camsi', 'CSS0022409' => 'camsi', 'CSS0025358' => 'camsi', 'CSS0044547' => 'camsi', 'DCAR_013057' => 'dca', 'DCAR_015058' => 'dca', 'DCAR_016027' => 'dca', 'DCAR_017327' => 'dca', 'DCAR_020743' => 'dca', 'DCAR_026157' => 'dca', 'DCAR_032339' => 'dca', 'DCAR_032340' => 'dca', 'Dinv11200' => 'din', 'Dinv11201' => 'din', 'Dinv20631' => 'din', 'Dinv23182' => 'din', 'Dinv33466' => 'din', 'Dinv33583' => 'din', 'Dinv38565' => 'din', 'Duzib068G0200' => 'dzi', 'Duzib147G0132' => 'dzi', 'Duzib147G0635' => 'dzi', 'Duzib205G1670' => 'dzi', 'Duzib251G0606' => 'dzi', 'ECA232G3336' => 'eca', 'ECA232G3763' => 'eca', 'ECA232G4845' => 'eca', 'ECA234G1607' => 'eca', 'ECA246G0932' => 'eca', 'ECA247G0781' => 'eca', 'ECA247G1932' => 'eca', 'ECA247G2079' => 'eca', 'ECA247G3338' => 'eca', 'ECA247G4115' => 'eca', 'EL10Ac3g06552' => 'bvu', 'EL10Ac5g10721' => 'bvu', 'EL10Ac5g10722' => 'bvu', 'EL10Ac5g10723' => 'bvu', 'EL10Ac5g11361' => 'bvu', 'EL10Ac6g13553' => 'bvu', 'EL10As8g23872' => 'bvu', 'Eucgr.B00250' => 'egr', 'Eucgr.B00251' => 'egr', 'Eucgr.B03533' => 'egr', 'Eucgr.I02381' => 'egr', 'Eucgr.K02700' => 'egr', 'FAN02G0174' => 'fan', 'FAN02G3146' => 'fan', 'FAN04G1672' => 'fan', 'FAN04G2273' => 'fan', 'FAN05G2791' => 'fan', 'FAN05G4035' => 'fan', 'FAN07G0834' => 'fan', 'FAN08G1198' => 'fan', 'FAN09G4182' => 'fan', 'FAN12G0496' => 'fan', 'FAN13G1027' => 'fan', 'FAN13G2951' => 'fan', 'FAN14G0705' => 'fan', 'FAN14G0720' => 'fan', 'FAN17G0201' => 'fan', 'FAN17G2665' => 'fan', 'FAN18G1456' => 'fan', 'FAN18G1525' => 'fan', 'FAN18G3500' => 'fan', 'FAN28G2670' => 'fan', 'FvH4_1g12391' => 'fve', 'FvH4_4g23220' => 'fve', 'FvH4_5g08810' => 'fve', 'FvH4_5g28960' => 'fve', 'FvH4_6g42820' => 'fve', 'FvH4_6g51110' => 'fve', 'Glyma.02G051802' => 'gma', 'Glyma.04G185300' => 'gma', 'Glyma.05G202900' => 'gma', 'Glyma.08G010300' => 'gma', 'Glyma.16G131900' => 'gma', 'Glyma.17G087900' => 'gma', 'Gohir.A07G048600' => 'ghi', 'Gohir.A11G179000' => 'ghi', 'Gohir.A12G140900' => 'ghi', 'Gohir.A12G140950' => 'ghi', 'Gohir.A12G191700' => 'ghi', 'Gohir.A13G086300' => 'ghi', 'Gohir.D07G052900' => 'ghi', 'Gohir.D11G186600' => 'ghi', 'Gohir.D12G145575' => 'ghi', 'Gohir.D12G145650' => 'ghi', 'Gohir.D12G145725' => 'ghi', 'Gohir.D12G194050' => 'ghi', 'Gohir.D13G091800' => 'ghi', 'Gorai.001G055900' => 'gra', 'Gorai.007G198400' => 'gra', 'Gorai.008G157000' => 'gra', 'Gorai.008G157100' => 'gra', 'Gorai.008G208700' => 'gra', 'Gorai.010G138700' => 'gra', 'GSVIVG01000977001' => 'vvi', 'GSVIVG01007708001' => 'vvi', 'GSVIVG01008587001' => 'vvi', 'GSVIVG01018849001' => 'vvi', 'GSVIVG01032432001' => 'vvi', 'HanXRQChr02g0034131' => 'han', 'HanXRQChr02g0035981' => 'han', 'HanXRQChr02g0035991' => 'han', 'HanXRQChr05g0155611' => 'han', 'HanXRQChr05g0155621' => 'han', 'HanXRQChr08g0236501' => 'han', 'HanXRQChr09g0261321' => 'han', 'HanXRQChr09g0272081' => 'han', 'HanXRQChr10g0310741' => 'han', 'HanXRQChr11g0325591' => 'han', 'HanXRQChr12g0385691' => 'han', 'HanXRQChr13g0387801' => 'han', 'HanXRQChr15g0463011' => 'han', 'Haze_03826' => 'cav', 'Haze_03827' => 'cav', 'Haze_07183' => 'cav', 'Haze_07537' => 'cav', 'Haze_07539' => 'cav', 'Haze_12461' => 'cav', 'Haze_16115' => 'cav', 'Haze_16808' => 'cav', 'Haze_18531' => 'cav', 'Hma1.2p1_0046F.1_g026700' => 'hma', 'Hma1.2p1_0046F.1_g026710' => 'hma', 'Hma1.2p1_0168F.1_g074340' => 'hma', 'Hma1.2p1_0266F.1_g107030' => 'hma', 'Hma1.2p1_0266F.1_g107060' => 'hma', 'Hma1.2p1_0275F.1_g110510' => 'hma', 'Hma1.2p1_0592F.1_g185490' => 'hma', 'Hma1.2p1_0592F.1_g185500' => 'hma', 'Hma1.2p1_0592F.1_g185510' => 'hma', 'Hma1.2p1_0592F.1_g185520' => 'hma', 'Hma1.2p1_0592F.1_g185530' => 'hma', 'Hma1.2p1_0818F.1_g223450' => 'hma', 'HPP92_009708' => 'vpl', 'HPP92_009793' => 'vpl', 'HPP92_009796' => 'vpl', 'HPP92_009797' => 'vpl', 'HPP92_014940' => 'vpl', 'HPP92_014988' => 'vpl', 'Hund02463' => 'sun', 'Hund02760' => 'sun', 'Hund05071' => 'sun', 'Hund10108' => 'sun', 'Hund11204' => 'sun', 'Hund14016' => 'sun', 'Hund16464' => 'sun', 'Lalb_Chr09g0333391' => 'lal', 'Lalb_Chr11g0070461' => 'lal', 'Lalb_Chr12g0201671' => 'lal', 'Lalb_Chr13g0297161' => 'lal', 'Lj1g0002823' => 'lja', 'Lj3C1074T6' => 'lonja', 'Lj4A212T28' => 'lonja', 'Lj4g0005516' => 'lja', 'Lj4g0013705' => 'lja', 'Lj4g0027865' => 'lja', 'Lj5C92G16' => 'lonja', 'Lj5C92T12' => 'lonja', 'Lj7C596T3' => 'lonja', 'Lj9A446G59' => 'lonja', 'Lj9A482G21' => 'lonja', 'Lsat_1_v5_gn_1_28261' => 'lsa', 'Lsat_1_v5_gn_1_28281' => 'lsa', 'Lsat_1_v5_gn_1_32721' => 'lsa', 'Lsat_1_v5_gn_4_151760' => 'lsa', 'Lsat_1_v5_gn_4_2120' => 'lsa', 'Lsat_1_v5_gn_4_75761' => 'lsa', 'Lsat_1_v5_gn_5_10920' => 'lsa', 'Manes.02G099900' => 'mes', 'Manes.11G096200' => 'mes', 'Manes.12G007200' => 'mes', 'Manes.14G048300' => 'mes', 'Manes.17G114700' => 'mes', 'Mapoly0002s0070' => 'mpo', 'Mapoly0029s0099' => 'mpo', 'MBI07_g24742_MAGBIO' => 'mbi', 'MBI10_g27988_MAGBIO' => 'mbi', 'MBI11_g13057_MAGBIO' => 'mbi', 'MD02G1137200' => 'mdo', 'MD06G1137200' => 'mdo', 'MD07G1122300' => 'mdo', 'MD09G1078200' => 'mdo', 'MD13G1123700' => 'mdo', 'MD14G1151900' => 'mdo', 'MD17G1030900' => 'mdo', 'MD17G1068200' => 'mdo', 'MD17G1068600' => 'mdo', 'Medtr3g077540' => 'mtr', 'Medtr4g105530' => 'mtr', 'Medtr8g076580' => 'mtr', 'Medtr8g076590' => 'mtr', 'Medtr8g096410' => 'mtr', 'MELO3C016411.2' => 'cme', 'MELO3C017780.2' => 'cme', 'MELO3C022560.2' => 'cme', 'MELO3C026187.2' => 'cme', 'MELO3C026286.2' => 'cme', 'MELO3C032854.2' => 'cme', 'Migut.H02495' => 'egut', 'Migut.I00561' => 'egut', 'Migut.K01015' => 'egut', 'Migut.K01016' => 'egut', 'Migut.L00743' => 'egut', 'Migut.L00744' => 'egut', 'Migut.L00746' => 'egut', 'Migut.L00798' => 'egut', 'Migut.L00799' => 'egut', 'Migut.N02096' => 'egut', 'MSTRG.11259' => 'ama', 'MSTRG.23142' => 'ama', 'MSTRG.2499' => 'ama', 'Nitab4.5_0000003g0730' => 'nta', 'Nitab4.5_0000137g0020' => 'nta', 'Nitab4.5_0000721g0210' => 'nta', 'Nitab4.5_0000723g0050' => 'nta', 'Nitab4.5_0000913g0070' => 'nta', 'Nitab4.5_0001332g0040' => 'nta', 'Nitab4.5_0001771g0050' => 'nta', 'Nitab4.5_0001918g0050' => 'nta', 'Nitab4.5_0002686g0030' => 'nta', 'Nitab4.5_0003156g0020' => 'nta', 'Nitab4.5_0003383g0040' => 'nta', 'Nitab4.5_0003918g0010' => 'nta', 'Nitab4.5_0006760g0010' => 'nta', 'Nn1g05981' => 'nnu', 'Nn1g06288' => 'nnu', 'Nn3g16371' => 'nnu', 'Nn3g16786' => 'nnu', 'Nn4g22232' => 'nnu', 'Oeu005144.1' => 'oeu', 'Oeu005145.1' => 'oeu', 'Oeu011348.1' => 'oeu', 'Oeu016415.1' => 'oeu', 'Oeu023501.1' => 'oeu', 'Oeu044473.1' => 'oeu', 'Oeu048892.2' => 'oeu', 'Os01g0549200' => 'osa', 'Os02g0469300' => 'osa', 'Os04g0311100' => 'osa', 'Os06g0474900' => 'osa', 'Os10g0181700' => 'osa', 'Os11g0454800' => 'osa', 'Peaxi162Scf00037g00714' => 'pax', 'Peaxi162Scf00084g01217' => 'pax', 'Peaxi162Scf00257g00217' => 'pax', 'Peaxi162Scf00516g00215' => 'pax', 'Peaxi162Scf00689g00123' => 'pax', 'PGR044G2719' => 'pgr', 'PGR083G1360' => 'pgr', 'PGR102G2849' => 'pgr', 'PGR119G2534' => 'pgr', 'PGSC0003DMG400003538' => 'stu', 'PGSC0003DMG400028138' => 'stu', 'PGSC0003DMG400031732' => 'stu', 'PGSC0003DMG400038165' => 'stu', 'Phvul.002G284600' => 'pvu', 'Phvul.003G258200' => 'pvu', 'Phvul.009G176500' => 'pvu', 'Potri.003G167201' => 'ptr', 'Potri.005G118400' => 'ptr', 'Potri.012G089000' => 'ptr', 'Potri.012G102800' => 'ptr', 'Potri.015G079400' => 'ptr', 'Potri.015G100900' => 'ptr', 'Pp3c14_9810' => 'ppa', 'Pp3c15_10450' => 'ppa', 'Pp3c20_19150' => 'ppa', 'Pp3c23_12740' => 'ppa', 'Pp3c23_6310' => 'ppa', 'Pp3c24_3720' => 'ppa', 'Pp3c27_2580' => 'ppa', 'Pp3c9_8990' => 'ppa', 'PRCOL_00002854' => 'pco', 'Prupe.1G221200' => 'ppe', 'Prupe.3G289000' => 'ppe', 'Prupe.5G147000' => 'ppe', 'Prupe.6G157300' => 'ppe', 'Prupe.7G163400' => 'ppe', 'Psat0s2177g0040' => 'psa', 'Psat3g174760' => 'psa', 'Psat3g192160' => 'psa', 'Psat4g058520' => 'psa', 'Psat4g096840' => 'psa', 'Psat7g037320' => 'psa', 'PSO017G1274' => 'pso', 'PSO017G5166' => 'pso', 'PSO063G4558' => 'pso', 'PSO170G4458' => 'pso', 'PSO170G5005' => 'pso', 'PSO210G6156' => 'pso', 'PSO210G6635' => 'pso', 'PSO210G7397' => 'pso', 'PSO210G7700' => 'pso', 'PSO455G0035' => 'pso', 'PSO455G0180' => 'pso', 'PSO478G4515' => 'pso', 'PSO832G1305' => 'pso', 'PSO832G3489' => 'pso', 'QL02p075247' => 'qlo', 'QL03p051148' => 'qlo', 'QL05p010313' => 'qlo', 'QL06p034627' => 'qlo', 'QL10p001889' => 'qlo', 'QL10p010846' => 'qlo', 'RcHm_v2.0_Chr1g0350621' => 'rch', 'RcHm_v2.0_Chr1g0350641' => 'rch', 'RcHm_v2.0_Chr2g0092891' => 'rch', 'RcHm_v2.0_Chr2g0100251' => 'rch', 'RcHm_v2.0_Chr2g0158661' => 'rch', 'RcHm_v2.0_Chr2g0172741' => 'rch', 'RcHm_v2.0_Chr4g0429571' => 'rch', 'RcHm_v2.0_Chr5g0042471' => 'rch', 'RcHm_v2.0_Chr7g0189451' => 'rch', 'Rhsim08G0052000' => 'rsi', 'Rhsim08G0174400' => 'rsi', 'Rhsim08G0193200' => 'rsi', 'Rhsim10G0214800' => 'rsi', 'Rhsim10G0214900' => 'rsi', 'Rhsim10G0215000' => 'rsi', 'Rhsim12G0022900' => 'rsi', 'Rhsim12G0177500' => 'rsi', 'Rhsim12G0177700' => 'rsi', 'Sabra03G0122600' => 'sbr', 'Sabra05G0097400' => 'sbr', 'Sabra12G0064100' => 'sbr', 'Sabra15G0121300' => 'sbr', 'SalBow2G0642' => 'sbo', 'SalBow5G2667' => 'sbo', 'SalBow5G4873' => 'sbo', 'SalBow8G2395' => 'sbo', 'Sc03g0003290' => 'sci', 'Sc10g0010130' => 'sci', 'Sc22g0003650' => 'sci', 'Sed0001603' => 'sed', 'Sed0004259' => 'sed', 'Sed0006789' => 'sed', 'Sed0011838' => 'sed', 'Sed0012964' => 'sed', 'Sed0016383' => 'sed', 'Sed0019010' => 'sed', 'Sed0020188' => 'sed', 'SEGI_04702' => 'sgi', 'SEGI_17231' => 'sgi', 'SEGI_18877' => 'sgi', 'SEGI_25196' => 'sgi', 'SEGI_25515' => 'sgi', 'SEGI_28445' => 'sgi', 'SEGI_37452' => 'sgi', 'SGA_v2.0_scaffold188G40336' => 'sas', 'SGA_v2.0_scaffold228G43247' => 'sas', 'SGA_v2.0_scaffold280G46853' => 'sas', 'SGA_v2.0_scaffold34G13808' => 'sas', 'SGA_v2.0_scaffold40G15576' => 'sas', 'SGA_v2.0_scaffold611G53188' => 'sas', 'SGA_v2.0_scaffold78G25461' => 'sas', 'SGA_v2.0_scaffold90G27888' => 'sas', 'SHI08601' => 'shi', 'SHI08606' => 'shi', 'SHI17117' => 'shi', 'SHI17119' => 'shi', 'SMO118G0201' => 'smo', 'SMO169G0247' => 'smo', 'SMO176G0006' => 'smo', 'SMO176G0015' => 'smo', 'SMO202G0006' => 'smo', 'SMO240G0050' => 'smo', 'SMO286G0009' => 'smo', 'SMO338G0033' => 'smo', 'SMO356G0533' => 'smo', 'SMO364G0382' => 'smo', 'SMO367G0166' => 'smo', 'SMO367G1098' => 'smo', 'Solyc01g009920.3' => 'sly', 'Solyc01g099300.3' => 'sly', 'Solyc02g084700.3' => 'sly', 'Solyc03g097520.3' => 'sly', 'Solyc06g071580.3' => 'sly', 'Solyc10g081760.3' => 'sly', 'Sopen01g005480' => 'spe', 'Sopen01g042850' => 'spe', 'Sopen02g029370' => 'spe', 'Sopen03g028280' => 'spe', 'Sopen06g027870' => 'spe', 'Sopen10g032270' => 'spe', 'Sp5g18180' => 'spa', 'Sp6g12880' => 'spa', 'Sp6g30850' => 'spa', 'Sp7g22960' => 'spa', 'Sp7g34010' => 'spa', 'SpUn1326_0010' => 'spa', 'TAR371G0242' => 'tar', 'TAR622G0638' => 'tar', 'TAR628G1548' => 'tar', 'TAR629G1079' => 'tar', 'TAR629G3413' => 'tar', 'THA.LOC104804249' => 'tha', 'THA.LOC104808315' => 'tha', 'THA.LOC104809238' => 'tha', 'THA.LOC104825484' => 'tha', 'Thecc.01G025500' => 'tca', 'Thecc.03G015800' => 'tca', 'Thecc.03G018000' => 'tca', 'Thecc.03G134800' => 'tca', 'Thecc.04G014700' => 'tca', 'Thhalv10006991m.g' => 'esa', 'Thhalv10012707m.g' => 'esa', 'Thhalv10015739m.g' => 'esa', 'Thhalv10024553m.g' => 'esa', 'Thhalv10024673m.g' => 'esa', 'Thhalv10029187m.g' => 'esa', 'TPR.G12971' => 'tpr', 'TPR.G29396' => 'tpr', 'TPR.G33376' => 'tpr', 'TPR.G35508' => 'tpr', 'TPR.G35516' => 'tpr', 'TPR.G37317' => 'tpr', 'TPR.G37389' => 'tpr', 'TPR.G37523' => 'tpr', 'TPR.G559' => 'tpr', 'TWI14G0070' => 'twi', 'TWI14G0729' => 'twi', 'TWI18G0596' => 'twi', 'TWI39G0780' => 'twi', 'TWI39G0850' => 'twi', 'TWI73G1052' => 'twi', 'unitig_52.g17485' => 'ugi', 'unitig_61.g26355' => 'ugi', 'vmacro01040' => 'vma', 'vmacro16731' => 'vma', 'vmacro18270' => 'vma', 'vmacro19142' => 'vma', 'vmacro19407' => 'vma', 'vmacro19408' => 'vma', 'vmacro21899' => 'vma', 'vmacro21900' => 'vma', 'vmacro21901' => 'vma', 'VMungo0251G0490' => 'vmu', 'VMungo0251G1748' => 'vmu', 'VMungo1309G0421' => 'vmu', 'Zm00001eb086500' => 'zma', 'Zm00001eb150680' => 'zma', 'Zm00001eb162330' => 'zma', 'Zm00001eb203130' => 'zma', 'Zm00001eb369480' => 'zma', 'Zm00001eb382340' => 'zma', 'Zm00001eb416360' => 'zma' ), 'gf_id' => 'HOM05D000902', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000902' ), 'data_identifier' => 'HOM05D000902', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000902', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '663', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02470' => 'bna', 'A01p16260' => 'bna', 'A02p01680' => 'bna', 'A03p16600' => 'bna', 'A03p55660' => 'bna', 'A03p64160' => 'bna', 'A03p64170' => 'bna', 'A08p31900' => 'bna', 'A09p59530' => 'bna', 'A10p08230' => 'bna', 'A10p25090' => 'bna', 'Aa31LG3G7100' => 'aar', 'Aa31LG3G7110' => 'aar', 'Aa31LG6G13160' => 'aar', 'Aa31LG7G10770' => 'aar', 'Aa31LG7G3830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2723' => 'aag', 'Actinidia08045' => 'ach', 'Actinidia08888' => 'ach', 'Actinidia18333' => 'ach', 'Actinidia19334' => 'ach', 'Actinidia25552' => 'ach', 'Actinidia26089' => 'ach', 'Actinidia30615' => 'ach', 'Actinidia30616' => 'ach', 'Actinidia33083' => 'ach', 'Actinidia35762' => 'ach', 'Ah.02g110620' => 'amhyb', 'Ah.11g046390' => 'amhyb', 'AL1G31670' => 'aly', 'AL6G23730' => 'aly', 'AL7G14740' => 'aly', 'AL7G14750' => 'aly', 'AL7G14760' => 'aly', 'AL7G28220' => 'aly', 'AL8G24940' => 'aly', 'Aqoxy3G01665' => 'aox', 'Aqoxy3G02853' => 'aox', 'Aqoxy5G01513' => 'aox', 'Aqoxy5G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8SKA4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ75LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKDA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0LJZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7REX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZP4YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWX7I5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2QKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS0L9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPCD8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q161UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC7XCF' => 'arhy', 'AT1G19100' => 'ath', 'AT4G24970' => 'ath', 'AT4G36270' => 'ath', 'AT4G36280' => 'ath', 'AT4G36290' => 'ath', 'AT5G13130' => 'ath', 'AT5G50780' => 'ath', 'ATR0582G266' => 'atr', 'ATR0661G195' => 'atr', 'ATR1152G031' => 'atr', 'Atru.chr11.2382' => 'acertr', 'Atru.chr12.2337' => 'acertr', 'Atru.chr3.744' => 'acertr', 'Atru.chr6.1870' => 'acertr', 'Atru.chr9.2515' => 'acertr', 'AUR62004120' => 'cqu', 'AUR62005667' => 'cqu', 'AUR62007634' => 'cqu', 'AUR62008186' => 'cqu', 'AUR62008187' => 'cqu', 'AUR62008188' => 'cqu', 'AUR62027954' => 'cqu', 'AUR62028766' => 'cqu', 'AUR62028767' => 'cqu', 'AUR62028768' => 'cqu', 'AUR62028886' => 'cqu', 'AUR62029563' => 'cqu', 'AUR62038832' => 'cqu', 'BcaB01g04149' => 'bca', 'BcaB03g12940' => 'bca', 'BcaB03g13090' => 'bca', 'BcaB03g14466' => 'bca', 'BcaB05g24035' => 'bca', 'BcaC01g06050' => 'bca', 'BcaC04g19148' => 'bca', 'BcaC04g20761' => 'bca', 'BcaC06g32845' => 'bca', 'BcaC07g41274' => 'bca', 'BcaC09g50827' => 'bca', 'BcaNung00741' => 'bca', 'BcaNung00742' => 'bca', 'BcaNung01859' => 'bca', 'BcaNung03985' => 'bca', 'BcaNung03989' => 'bca', 'BcaNung05661' => 'bca', 'BolC1t00257H' => 'bol', 'BolC1t01956H' => 'bol', 'BolC2t06534H' => 'bol', 'BolC3t14334H' => 'bol', 'BolC5t30451H' => 'bol', 'BolC7t45880H' => 'bol', 'BolC7t46586H' => 'bol', 'BolC8t49301H' => 'bol', 'BolC8t51837H' => 'bol', 'BolC9t56822H' => 'bol', 'BolC9t59235H' => 'bol', 'BraA01t00234Z' => 'bra', 'BraA01t01563Z' => 'bra', 'BraA02t05147Z' => 'bra', 'BraA03t10947Z' => 'bra', 'BraA03t14633Z' => 'bra', 'BraA08t35112Z' => 'bra', 'BraA09t41330Z' => 'bra', 'BraA10t44570Z' => 'bra', 'C01p02670' => 'bna', 'C01p20260' => 'bna', 'C02p05890' => 'bna', 'C03p19530' => 'bna', 'C05p17470' => 'bna', 'C07p53900' => 'bna', 'C07p61630' => 'bna', 'C08p16800' => 'bna', 'C08p42810' => 'bna', 'C09p39480' => 'bna', 'C09p63980' => 'bna', 'CAN.G1001.7' => 'can', 'CAN.G1034.55' => 'can', 'CAN.G143.7' => 'can', 'CAN.G3340.1' => 'can', 'CAN.G358.19' => 'can', 'CAN.G373.2' => 'can', 'CAN.G674.16' => 'can', 'CAN.G674.17' => 'can', 'CAN.G674.18' => 'can', 'CAN.G732.2' => 'can', 'CAN.G732.3' => 'can', 'CAN.G993.39' => 'can', 'CANSAT01G2052' => 'cansat', 'CANSAT80G0070' => 'cansat', 'CANSAT80G0483' => 'cansat', 'CANSAT80G0625' => 'cansat', 'CARHR019690' => 'chi', 'CARHR080280' => 'chi', 'CARHR152750' => 'chi', 'CARHR152760' => 'chi', 'CARHR152770' => 'chi', 'CARHR200340' => 'chi', 'CARHR232370' => 'chi', 'CARHR244670' => 'chi', 'CARHR244680' => 'chi', 'CARHR257520' => 'chi', 'Carub.0001s1872' => 'cru', 'Carub.0006s1130' => 'cru', 'Carub.0007s0396' => 'cru', 'Carub.0007s0397' => 'cru', 'Carub.0007s1608' => 'cru', 'Carub.0008s1068' => 'cru', 'Carub.0008s1077' => 'cru', 'Ca_16158_v3' => 'car', 'Ca_17571_v3' => 'car', 'Ca_21936_v3' => 'car', 'Ca_22350_v3' => 'car', 'CBR_g22445' => 'cbr', 'CBR_g26290' => 'cbr', 'Cc04_g09610' => 'ccan', 'Cc04_g12280' => 'ccan', 'Cc07_g10230' => 'ccan', 'CDE02G0093' => 'cde', 'CDE02G0701' => 'cde', 'CDE04G1050' => 'cde', 'CDE05G1833' => 'cde', 'CDE05G3058' => 'cde', 'CDE05G3380' => 'cde', 'CDE06G0536' => 'cde', 'Cfa006923' => 'cfa', 'Cfa009402' => 'cfa', 'Cfa018751' => 'cfa', 'Cfa019164' => 'cfa', 'Cfa022935' => 'cfa', 'Ciclev10019081m.g' => 'ccl', 'Ciclev10025076m.g' => 'ccl', 'Ciclev10030712m.g' => 'ccl', 'Ciclev10033760m.g' => 'ccl', 'CiPaw.05G105600' => 'cil', 'CiPaw.08G136700' => 'cil', 'CiPaw.11G003900' => 'cil', 'CiPaw.11G023700' => 'cil', 'CiPaw.12G003700' => 'cil', 'ClCG06G017100' => 'cla', 'ClCG06G018110' => 'cla', 'ClCG07G008800' => 'cla', 'ClCG07G015330' => 'cla', 'COL.COLO4_13698' => 'col', 'COL.COLO4_16659' => 'col', 'COL.COLO4_21986' => 'col', 'COL.COLO4_24049' => 'col', 'COL.COLO4_29061' => 'col', 'COL.COLO4_29075' => 'col', 'COL.COLO4_30094' => 'col', 'Cpa.g.c33689' => 'cpa', 'Cpa.g.sc108.39' => 'cpa', 'Cpa.g.sc108.41' => 'cpa', 'Cpa.g.sc1163.1' => 'cpa', 'Cpa.g.sc4.155' => 'cpa', 'Cpa.g.sc6.194' => 'cpa', 'CsaV3_1G000340' => 'csa', 'CsaV3_1G001400' => 'csa', 'CsaV3_4G002220' => 'csa', 'CsaV3_4G005370' => 'csa', 'CSS0007487' => 'camsi', 'CSS0008066' => 'camsi', 'CSS0009120' => 'camsi', 'CSS0015512' => 'camsi', 'CSS0022409' => 'camsi', 'CSS0025358' => 'camsi', 'CSS0044547' => 'camsi', 'DCAR_013057' => 'dca', 'DCAR_015058' => 'dca', 'DCAR_016027' => 'dca', 'DCAR_017327' => 'dca', 'DCAR_020743' => 'dca', 'DCAR_026157' => 'dca', 'DCAR_032339' => 'dca', 'DCAR_032340' => 'dca', 'Dinv11200' => 'din', 'Dinv11201' => 'din', 'Dinv20631' => 'din', 'Dinv23182' => 'din', 'Dinv33466' => 'din', 'Dinv33583' => 'din', 'Dinv38565' => 'din', 'Duzib068G0200' => 'dzi', 'Duzib147G0132' => 'dzi', 'Duzib147G0635' => 'dzi', 'Duzib205G1670' => 'dzi', 'Duzib251G0606' => 'dzi', 'ECA232G3336' => 'eca', 'ECA232G3763' => 'eca', 'ECA232G4845' => 'eca', 'ECA234G1607' => 'eca', 'ECA246G0932' => 'eca', 'ECA247G0781' => 'eca', 'ECA247G1932' => 'eca', 'ECA247G2079' => 'eca', 'ECA247G3338' => 'eca', 'ECA247G4115' => 'eca', 'EL10Ac3g06552' => 'bvu', 'EL10Ac5g10721' => 'bvu', 'EL10Ac5g10722' => 'bvu', 'EL10Ac5g10723' => 'bvu', 'EL10Ac5g11361' => 'bvu', 'EL10Ac6g13553' => 'bvu', 'EL10As8g23872' => 'bvu', 'Eucgr.B00250' => 'egr', 'Eucgr.B00251' => 'egr', 'Eucgr.B03533' => 'egr', 'Eucgr.I02381' => 'egr', 'Eucgr.K02700' => 'egr', 'FAN02G0174' => 'fan', 'FAN02G3146' => 'fan', 'FAN04G1672' => 'fan', 'FAN04G2273' => 'fan', 'FAN05G2791' => 'fan', 'FAN05G4035' => 'fan', 'FAN07G0834' => 'fan', 'FAN08G1198' => 'fan', 'FAN09G4182' => 'fan', 'FAN12G0496' => 'fan', 'FAN13G1027' => 'fan', 'FAN13G2951' => 'fan', 'FAN14G0705' => 'fan', 'FAN14G0720' => 'fan', 'FAN17G0201' => 'fan', 'FAN17G2665' => 'fan', 'FAN18G1456' => 'fan', 'FAN18G1525' => 'fan', 'FAN18G3500' => 'fan', 'FAN28G2670' => 'fan', 'FvH4_1g12391' => 'fve', 'FvH4_4g23220' => 'fve', 'FvH4_5g08810' => 'fve', 'FvH4_5g28960' => 'fve', 'FvH4_6g42820' => 'fve', 'FvH4_6g51110' => 'fve', 'Glyma.02G051802' => 'gma', 'Glyma.04G185300' => 'gma', 'Glyma.05G202900' => 'gma', 'Glyma.08G010300' => 'gma', 'Glyma.16G131900' => 'gma', 'Glyma.17G087900' => 'gma', 'Gohir.A07G048600' => 'ghi', 'Gohir.A11G179000' => 'ghi', 'Gohir.A12G140900' => 'ghi', 'Gohir.A12G140950' => 'ghi', 'Gohir.A12G191700' => 'ghi', 'Gohir.A13G086300' => 'ghi', 'Gohir.D07G052900' => 'ghi', 'Gohir.D11G186600' => 'ghi', 'Gohir.D12G145575' => 'ghi', 'Gohir.D12G145650' => 'ghi', 'Gohir.D12G145725' => 'ghi', 'Gohir.D12G194050' => 'ghi', 'Gohir.D13G091800' => 'ghi', 'Gorai.001G055900' => 'gra', 'Gorai.007G198400' => 'gra', 'Gorai.008G157000' => 'gra', 'Gorai.008G157100' => 'gra', 'Gorai.008G208700' => 'gra', 'Gorai.010G138700' => 'gra', 'GSVIVG01000977001' => 'vvi', 'GSVIVG01007708001' => 'vvi', 'GSVIVG01008587001' => 'vvi', 'GSVIVG01018849001' => 'vvi', 'GSVIVG01032432001' => 'vvi', 'HanXRQChr02g0034131' => 'han', 'HanXRQChr02g0035981' => 'han', 'HanXRQChr02g0035991' => 'han', 'HanXRQChr05g0155611' => 'han', 'HanXRQChr05g0155621' => 'han', 'HanXRQChr08g0236501' => 'han', 'HanXRQChr09g0261321' => 'han', 'HanXRQChr09g0272081' => 'han', 'HanXRQChr10g0310741' => 'han', 'HanXRQChr11g0325591' => 'han', 'HanXRQChr12g0385691' => 'han', 'HanXRQChr13g0387801' => 'han', 'HanXRQChr15g0463011' => 'han', 'Haze_03826' => 'cav', 'Haze_03827' => 'cav', 'Haze_07183' => 'cav', 'Haze_07537' => 'cav', 'Haze_07539' => 'cav', 'Haze_12461' => 'cav', 'Haze_16115' => 'cav', 'Haze_16808' => 'cav', 'Haze_18531' => 'cav', 'Hma1.2p1_0046F.1_g026700' => 'hma', 'Hma1.2p1_0046F.1_g026710' => 'hma', 'Hma1.2p1_0168F.1_g074340' => 'hma', 'Hma1.2p1_0266F.1_g107030' => 'hma', 'Hma1.2p1_0266F.1_g107060' => 'hma', 'Hma1.2p1_0275F.1_g110510' => 'hma', 'Hma1.2p1_0592F.1_g185490' => 'hma', 'Hma1.2p1_0592F.1_g185500' => 'hma', 'Hma1.2p1_0592F.1_g185510' => 'hma', 'Hma1.2p1_0592F.1_g185520' => 'hma', 'Hma1.2p1_0592F.1_g185530' => 'hma', 'Hma1.2p1_0818F.1_g223450' => 'hma', 'HPP92_009708' => 'vpl', 'HPP92_009793' => 'vpl', 'HPP92_009796' => 'vpl', 'HPP92_009797' => 'vpl', 'HPP92_014940' => 'vpl', 'HPP92_014988' => 'vpl', 'Hund02463' => 'sun', 'Hund02760' => 'sun', 'Hund05071' => 'sun', 'Hund10108' => 'sun', 'Hund11204' => 'sun', 'Hund14016' => 'sun', 'Hund16464' => 'sun', 'Lalb_Chr09g0333391' => 'lal', 'Lalb_Chr11g0070461' => 'lal', 'Lalb_Chr12g0201671' => 'lal', 'Lalb_Chr13g0297161' => 'lal', 'Lj1g0002823' => 'lja', 'Lj3C1074T6' => 'lonja', 'Lj4A212T28' => 'lonja', 'Lj4g0005516' => 'lja', 'Lj4g0013705' => 'lja', 'Lj4g0027865' => 'lja', 'Lj5C92G16' => 'lonja', 'Lj5C92T12' => 'lonja', 'Lj7C596T3' => 'lonja', 'Lj9A446G59' => 'lonja', 'Lj9A482G21' => 'lonja', 'Lsat_1_v5_gn_1_28261' => 'lsa', 'Lsat_1_v5_gn_1_28281' => 'lsa', 'Lsat_1_v5_gn_1_32721' => 'lsa', 'Lsat_1_v5_gn_4_151760' => 'lsa', 'Lsat_1_v5_gn_4_2120' => 'lsa', 'Lsat_1_v5_gn_4_75761' => 'lsa', 'Lsat_1_v5_gn_5_10920' => 'lsa', 'Manes.02G099900' => 'mes', 'Manes.11G096200' => 'mes', 'Manes.12G007200' => 'mes', 'Manes.14G048300' => 'mes', 'Manes.17G114700' => 'mes', 'Mapoly0002s0070' => 'mpo', 'Mapoly0029s0099' => 'mpo', 'MBI07_g24742_MAGBIO' => 'mbi', 'MBI10_g27988_MAGBIO' => 'mbi', 'MBI11_g13057_MAGBIO' => 'mbi', 'MD02G1137200' => 'mdo', 'MD06G1137200' => 'mdo', 'MD07G1122300' => 'mdo', 'MD09G1078200' => 'mdo', 'MD13G1123700' => 'mdo', 'MD14G1151900' => 'mdo', 'MD17G1030900' => 'mdo', 'MD17G1068200' => 'mdo', 'MD17G1068600' => 'mdo', 'Medtr3g077540' => 'mtr', 'Medtr4g105530' => 'mtr', 'Medtr8g076580' => 'mtr', 'Medtr8g076590' => 'mtr', 'Medtr8g096410' => 'mtr', 'MELO3C016411.2' => 'cme', 'MELO3C017780.2' => 'cme', 'MELO3C022560.2' => 'cme', 'MELO3C026187.2' => 'cme', 'MELO3C026286.2' => 'cme', 'MELO3C032854.2' => 'cme', 'Migut.H02495' => 'egut', 'Migut.I00561' => 'egut', 'Migut.K01015' => 'egut', 'Migut.K01016' => 'egut', 'Migut.L00743' => 'egut', 'Migut.L00744' => 'egut', 'Migut.L00746' => 'egut', 'Migut.L00798' => 'egut', 'Migut.L00799' => 'egut', 'Migut.N02096' => 'egut', 'MSTRG.11259' => 'ama', 'MSTRG.23142' => 'ama', 'MSTRG.2499' => 'ama', 'Nitab4.5_0000003g0730' => 'nta', 'Nitab4.5_0000137g0020' => 'nta', 'Nitab4.5_0000721g0210' => 'nta', 'Nitab4.5_0000723g0050' => 'nta', 'Nitab4.5_0000913g0070' => 'nta', 'Nitab4.5_0001332g0040' => 'nta', 'Nitab4.5_0001771g0050' => 'nta', 'Nitab4.5_0001918g0050' => 'nta', 'Nitab4.5_0002686g0030' => 'nta', 'Nitab4.5_0003156g0020' => 'nta', 'Nitab4.5_0003383g0040' => 'nta', 'Nitab4.5_0003918g0010' => 'nta', 'Nitab4.5_0006760g0010' => 'nta', 'Nn1g05981' => 'nnu', 'Nn1g06288' => 'nnu', 'Nn3g16371' => 'nnu', 'Nn3g16786' => 'nnu', 'Nn4g22232' => 'nnu', 'Oeu005144.1' => 'oeu', 'Oeu005145.1' => 'oeu', 'Oeu011348.1' => 'oeu', 'Oeu016415.1' => 'oeu', 'Oeu023501.1' => 'oeu', 'Oeu044473.1' => 'oeu', 'Oeu048892.2' => 'oeu', 'Os01g0549200' => 'osa', 'Os02g0469300' => 'osa', 'Os04g0311100' => 'osa', 'Os06g0474900' => 'osa', 'Os10g0181700' => 'osa', 'Os11g0454800' => 'osa', 'Peaxi162Scf00037g00714' => 'pax', 'Peaxi162Scf00084g01217' => 'pax', 'Peaxi162Scf00257g00217' => 'pax', 'Peaxi162Scf00516g00215' => 'pax', 'Peaxi162Scf00689g00123' => 'pax', 'PGR044G2719' => 'pgr', 'PGR083G1360' => 'pgr', 'PGR102G2849' => 'pgr', 'PGR119G2534' => 'pgr', 'PGSC0003DMG400003538' => 'stu', 'PGSC0003DMG400028138' => 'stu', 'PGSC0003DMG400031732' => 'stu', 'PGSC0003DMG400038165' => 'stu', 'Phvul.002G284600' => 'pvu', 'Phvul.003G258200' => 'pvu', 'Phvul.009G176500' => 'pvu', 'Potri.003G167201' => 'ptr', 'Potri.005G118400' => 'ptr', 'Potri.012G089000' => 'ptr', 'Potri.012G102800' => 'ptr', 'Potri.015G079400' => 'ptr', 'Potri.015G100900' => 'ptr', 'Pp3c14_9810' => 'ppa', 'Pp3c15_10450' => 'ppa', 'Pp3c20_19150' => 'ppa', 'Pp3c23_12740' => 'ppa', 'Pp3c23_6310' => 'ppa', 'Pp3c24_3720' => 'ppa', 'Pp3c27_2580' => 'ppa', 'Pp3c9_8990' => 'ppa', 'PRCOL_00002854' => 'pco', 'Prupe.1G221200' => 'ppe', 'Prupe.3G289000' => 'ppe', 'Prupe.5G147000' => 'ppe', 'Prupe.6G157300' => 'ppe', 'Prupe.7G163400' => 'ppe', 'Psat0s2177g0040' => 'psa', 'Psat3g174760' => 'psa', 'Psat3g192160' => 'psa', 'Psat4g058520' => 'psa', 'Psat4g096840' => 'psa', 'Psat7g037320' => 'psa', 'PSO017G1274' => 'pso', 'PSO017G5166' => 'pso', 'PSO063G4558' => 'pso', 'PSO170G4458' => 'pso', 'PSO170G5005' => 'pso', 'PSO210G6156' => 'pso', 'PSO210G6635' => 'pso', 'PSO210G7397' => 'pso', 'PSO210G7700' => 'pso', 'PSO455G0035' => 'pso', 'PSO455G0180' => 'pso', 'PSO478G4515' => 'pso', 'PSO832G1305' => 'pso', 'PSO832G3489' => 'pso', 'QL02p075247' => 'qlo', 'QL03p051148' => 'qlo', 'QL05p010313' => 'qlo', 'QL06p034627' => 'qlo', 'QL10p001889' => 'qlo', 'QL10p010846' => 'qlo', 'RcHm_v2.0_Chr1g0350621' => 'rch', 'RcHm_v2.0_Chr1g0350641' => 'rch', 'RcHm_v2.0_Chr2g0092891' => 'rch', 'RcHm_v2.0_Chr2g0100251' => 'rch', 'RcHm_v2.0_Chr2g0158661' => 'rch', 'RcHm_v2.0_Chr2g0172741' => 'rch', 'RcHm_v2.0_Chr4g0429571' => 'rch', 'RcHm_v2.0_Chr5g0042471' => 'rch', 'RcHm_v2.0_Chr7g0189451' => 'rch', 'Rhsim08G0052000' => 'rsi', 'Rhsim08G0174400' => 'rsi', 'Rhsim08G0193200' => 'rsi', 'Rhsim10G0214800' => 'rsi', 'Rhsim10G0214900' => 'rsi', 'Rhsim10G0215000' => 'rsi', 'Rhsim12G0022900' => 'rsi', 'Rhsim12G0177500' => 'rsi', 'Rhsim12G0177700' => 'rsi', 'Sabra03G0122600' => 'sbr', 'Sabra05G0097400' => 'sbr', 'Sabra12G0064100' => 'sbr', 'Sabra15G0121300' => 'sbr', 'SalBow2G0642' => 'sbo', 'SalBow5G2667' => 'sbo', 'SalBow5G4873' => 'sbo', 'SalBow8G2395' => 'sbo', 'Sc03g0003290' => 'sci', 'Sc10g0010130' => 'sci', 'Sc22g0003650' => 'sci', 'Sed0001603' => 'sed', 'Sed0004259' => 'sed', 'Sed0006789' => 'sed', 'Sed0011838' => 'sed', 'Sed0012964' => 'sed', 'Sed0016383' => 'sed', 'Sed0019010' => 'sed', 'Sed0020188' => 'sed', 'SEGI_04702' => 'sgi', 'SEGI_17231' => 'sgi', 'SEGI_18877' => 'sgi', 'SEGI_25196' => 'sgi', 'SEGI_25515' => 'sgi', 'SEGI_28445' => 'sgi', 'SEGI_37452' => 'sgi', 'SGA_v2.0_scaffold188G40336' => 'sas', 'SGA_v2.0_scaffold228G43247' => 'sas', 'SGA_v2.0_scaffold280G46853' => 'sas', 'SGA_v2.0_scaffold34G13808' => 'sas', 'SGA_v2.0_scaffold40G15576' => 'sas', 'SGA_v2.0_scaffold611G53188' => 'sas', 'SGA_v2.0_scaffold78G25461' => 'sas', 'SGA_v2.0_scaffold90G27888' => 'sas', 'SHI08601' => 'shi', 'SHI08606' => 'shi', 'SHI17117' => 'shi', 'SHI17119' => 'shi', 'SMO118G0201' => 'smo', 'SMO169G0247' => 'smo', 'SMO176G0006' => 'smo', 'SMO176G0015' => 'smo', 'SMO202G0006' => 'smo', 'SMO240G0050' => 'smo', 'SMO286G0009' => 'smo', 'SMO338G0033' => 'smo', 'SMO356G0533' => 'smo', 'SMO364G0382' => 'smo', 'SMO367G0166' => 'smo', 'SMO367G1098' => 'smo', 'Solyc01g009920.3' => 'sly', 'Solyc01g099300.3' => 'sly', 'Solyc02g084700.3' => 'sly', 'Solyc03g097520.3' => 'sly', 'Solyc06g071580.3' => 'sly', 'Solyc10g081760.3' => 'sly', 'Sopen01g005480' => 'spe', 'Sopen01g042850' => 'spe', 'Sopen02g029370' => 'spe', 'Sopen03g028280' => 'spe', 'Sopen06g027870' => 'spe', 'Sopen10g032270' => 'spe', 'Sp5g18180' => 'spa', 'Sp6g12880' => 'spa', 'Sp6g30850' => 'spa', 'Sp7g22960' => 'spa', 'Sp7g34010' => 'spa', 'SpUn1326_0010' => 'spa', 'TAR371G0242' => 'tar', 'TAR622G0638' => 'tar', 'TAR628G1548' => 'tar', 'TAR629G1079' => 'tar', 'TAR629G3413' => 'tar', 'THA.LOC104804249' => 'tha', 'THA.LOC104808315' => 'tha', 'THA.LOC104809238' => 'tha', 'THA.LOC104825484' => 'tha', 'Thecc.01G025500' => 'tca', 'Thecc.03G015800' => 'tca', 'Thecc.03G018000' => 'tca', 'Thecc.03G134800' => 'tca', 'Thecc.04G014700' => 'tca', 'Thhalv10006991m.g' => 'esa', 'Thhalv10012707m.g' => 'esa', 'Thhalv10015739m.g' => 'esa', 'Thhalv10024553m.g' => 'esa', 'Thhalv10024673m.g' => 'esa', 'Thhalv10029187m.g' => 'esa', 'TPR.G12971' => 'tpr', 'TPR.G29396' => 'tpr', 'TPR.G33376' => 'tpr', 'TPR.G35508' => 'tpr', 'TPR.G35516' => 'tpr', 'TPR.G37317' => 'tpr', 'TPR.G37389' => 'tpr', 'TPR.G37523' => 'tpr', 'TPR.G559' => 'tpr', 'TWI14G0070' => 'twi', 'TWI14G0729' => 'twi', 'TWI18G0596' => 'twi', 'TWI39G0780' => 'twi', 'TWI39G0850' => 'twi', 'TWI73G1052' => 'twi', 'unitig_52.g17485' => 'ugi', 'unitig_61.g26355' => 'ugi', 'vmacro01040' => 'vma', 'vmacro16731' => 'vma', 'vmacro18270' => 'vma', 'vmacro19142' => 'vma', 'vmacro19407' => 'vma', 'vmacro19408' => 'vma', 'vmacro21899' => 'vma', 'vmacro21900' => 'vma', 'vmacro21901' => 'vma', 'VMungo0251G0490' => 'vmu', 'VMungo0251G1748' => 'vmu', 'VMungo1309G0421' => 'vmu', 'Zm00001eb086500' => 'zma', 'Zm00001eb150680' => 'zma', 'Zm00001eb162330' => 'zma', 'Zm00001eb203130' => 'zma', 'Zm00001eb369480' => 'zma', 'Zm00001eb382340' => 'zma', 'Zm00001eb416360' => 'zma' ) $gf_id = 'HOM05D000902' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000902' ) $data_identifier = 'HOM05D000902' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 13, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 10, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 6, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 9, 'hma' => (int) 12, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 4, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 6, 'ppa' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 6, 'rch' => (int) 9, 'rsi' => (int) 9, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 12, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 3, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416360' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000902', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '663', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02470' => 'bna', 'A01p16260' => 'bna', 'A02p01680' => 'bna', 'A03p16600' => 'bna', 'A03p55660' => 'bna', 'A03p64160' => 'bna', 'A03p64170' => 'bna', 'A08p31900' => 'bna', 'A09p59530' => 'bna', 'A10p08230' => 'bna', 'A10p25090' => 'bna', 'Aa31LG3G7100' => 'aar', 'Aa31LG3G7110' => 'aar', 'Aa31LG6G13160' => 'aar', 'Aa31LG7G10770' => 'aar', 'Aa31LG7G3830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2723' => 'aag', 'Actinidia08045' => 'ach', 'Actinidia08888' => 'ach', 'Actinidia18333' => 'ach', 'Actinidia19334' => 'ach', 'Actinidia25552' => 'ach', 'Actinidia26089' => 'ach', 'Actinidia30615' => 'ach', 'Actinidia30616' => 'ach', 'Actinidia33083' => 'ach', 'Actinidia35762' => 'ach', 'Ah.02g110620' => 'amhyb', 'Ah.11g046390' => 'amhyb', 'AL1G31670' => 'aly', 'AL6G23730' => 'aly', 'AL7G14740' => 'aly', 'AL7G14750' => 'aly', 'AL7G14760' => 'aly', 'AL7G28220' => 'aly', 'AL8G24940' => 'aly', 'Aqoxy3G01665' => 'aox', 'Aqoxy3G02853' => 'aox', 'Aqoxy5G01513' => 'aox', 'Aqoxy5G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8SKA4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ75LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKDA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0LJZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7REX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZP4YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWX7I5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2QKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS0L9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPCD8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q161UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC7XCF' => 'arhy', 'AT1G19100' => 'ath', 'AT4G24970' => 'ath', 'AT4G36270' => 'ath', 'AT4G36280' => 'ath', 'AT4G36290' => 'ath', 'AT5G13130' => 'ath', 'AT5G50780' => 'ath', 'ATR0582G266' => 'atr', 'ATR0661G195' => 'atr', 'ATR1152G031' => 'atr', 'Atru.chr11.2382' => 'acertr', 'Atru.chr12.2337' => 'acertr', 'Atru.chr3.744' => 'acertr', 'Atru.chr6.1870' => 'acertr', 'Atru.chr9.2515' => 'acertr', 'AUR62004120' => 'cqu', 'AUR62005667' => 'cqu', 'AUR62007634' => 'cqu', 'AUR62008186' => 'cqu', 'AUR62008187' => 'cqu', 'AUR62008188' => 'cqu', 'AUR62027954' => 'cqu', 'AUR62028766' => 'cqu', 'AUR62028767' => 'cqu', 'AUR62028768' => 'cqu', 'AUR62028886' => 'cqu', 'AUR62029563' => 'cqu', 'AUR62038832' => 'cqu', 'BcaB01g04149' => 'bca', 'BcaB03g12940' => 'bca', 'BcaB03g13090' => 'bca', 'BcaB03g14466' => 'bca', 'BcaB05g24035' => 'bca', 'BcaC01g06050' => 'bca', 'BcaC04g19148' => 'bca', 'BcaC04g20761' => 'bca', 'BcaC06g32845' => 'bca', 'BcaC07g41274' => 'bca', 'BcaC09g50827' => 'bca', 'BcaNung00741' => 'bca', 'BcaNung00742' => 'bca', 'BcaNung01859' => 'bca', 'BcaNung03985' => 'bca', 'BcaNung03989' => 'bca', 'BcaNung05661' => 'bca', 'BolC1t00257H' => 'bol', 'BolC1t01956H' => 'bol', 'BolC2t06534H' => 'bol', 'BolC3t14334H' => 'bol', 'BolC5t30451H' => 'bol', 'BolC7t45880H' => 'bol', 'BolC7t46586H' => 'bol', 'BolC8t49301H' => 'bol', 'BolC8t51837H' => 'bol', 'BolC9t56822H' => 'bol', 'BolC9t59235H' => 'bol', 'BraA01t00234Z' => 'bra', 'BraA01t01563Z' => 'bra', 'BraA02t05147Z' => 'bra', 'BraA03t10947Z' => 'bra', 'BraA03t14633Z' => 'bra', 'BraA08t35112Z' => 'bra', 'BraA09t41330Z' => 'bra', 'BraA10t44570Z' => 'bra', 'C01p02670' => 'bna', 'C01p20260' => 'bna', 'C02p05890' => 'bna', 'C03p19530' => 'bna', 'C05p17470' => 'bna', 'C07p53900' => 'bna', 'C07p61630' => 'bna', 'C08p16800' => 'bna', 'C08p42810' => 'bna', 'C09p39480' => 'bna', 'C09p63980' => 'bna', 'CAN.G1001.7' => 'can', 'CAN.G1034.55' => 'can', 'CAN.G143.7' => 'can', 'CAN.G3340.1' => 'can', 'CAN.G358.19' => 'can', 'CAN.G373.2' => 'can', 'CAN.G674.16' => 'can', 'CAN.G674.17' => 'can', 'CAN.G674.18' => 'can', 'CAN.G732.2' => 'can', 'CAN.G732.3' => 'can', 'CAN.G993.39' => 'can', 'CANSAT01G2052' => 'cansat', 'CANSAT80G0070' => 'cansat', 'CANSAT80G0483' => 'cansat', 'CANSAT80G0625' => 'cansat', 'CARHR019690' => 'chi', 'CARHR080280' => 'chi', 'CARHR152750' => 'chi', 'CARHR152760' => 'chi', 'CARHR152770' => 'chi', 'CARHR200340' => 'chi', 'CARHR232370' => 'chi', 'CARHR244670' => 'chi', 'CARHR244680' => 'chi', 'CARHR257520' => 'chi', 'Carub.0001s1872' => 'cru', 'Carub.0006s1130' => 'cru', 'Carub.0007s0396' => 'cru', 'Carub.0007s0397' => 'cru', 'Carub.0007s1608' => 'cru', 'Carub.0008s1068' => 'cru', 'Carub.0008s1077' => 'cru', 'Ca_16158_v3' => 'car', 'Ca_17571_v3' => 'car', 'Ca_21936_v3' => 'car', 'Ca_22350_v3' => 'car', 'CBR_g22445' => 'cbr', 'CBR_g26290' => 'cbr', 'Cc04_g09610' => 'ccan', 'Cc04_g12280' => 'ccan', 'Cc07_g10230' => 'ccan', 'CDE02G0093' => 'cde', 'CDE02G0701' => 'cde', 'CDE04G1050' => 'cde', 'CDE05G1833' => 'cde', 'CDE05G3058' => 'cde', 'CDE05G3380' => 'cde', 'CDE06G0536' => 'cde', 'Cfa006923' => 'cfa', 'Cfa009402' => 'cfa', 'Cfa018751' => 'cfa', 'Cfa019164' => 'cfa', 'Cfa022935' => 'cfa', 'Ciclev10019081m.g' => 'ccl', 'Ciclev10025076m.g' => 'ccl', 'Ciclev10030712m.g' => 'ccl', 'Ciclev10033760m.g' => 'ccl', 'CiPaw.05G105600' => 'cil', 'CiPaw.08G136700' => 'cil', 'CiPaw.11G003900' => 'cil', 'CiPaw.11G023700' => 'cil', 'CiPaw.12G003700' => 'cil', 'ClCG06G017100' => 'cla', 'ClCG06G018110' => 'cla', 'ClCG07G008800' => 'cla', 'ClCG07G015330' => 'cla', 'COL.COLO4_13698' => 'col', 'COL.COLO4_16659' => 'col', 'COL.COLO4_21986' => 'col', 'COL.COLO4_24049' => 'col', 'COL.COLO4_29061' => 'col', 'COL.COLO4_29075' => 'col', 'COL.COLO4_30094' => 'col', 'Cpa.g.c33689' => 'cpa', 'Cpa.g.sc108.39' => 'cpa', 'Cpa.g.sc108.41' => 'cpa', 'Cpa.g.sc1163.1' => 'cpa', 'Cpa.g.sc4.155' => 'cpa', 'Cpa.g.sc6.194' => 'cpa', 'CsaV3_1G000340' => 'csa', 'CsaV3_1G001400' => 'csa', 'CsaV3_4G002220' => 'csa', 'CsaV3_4G005370' => 'csa', 'CSS0007487' => 'camsi', 'CSS0008066' => 'camsi', 'CSS0009120' => 'camsi', 'CSS0015512' => 'camsi', 'CSS0022409' => 'camsi', 'CSS0025358' => 'camsi', 'CSS0044547' => 'camsi', 'DCAR_013057' => 'dca', 'DCAR_015058' => 'dca', 'DCAR_016027' => 'dca', 'DCAR_017327' => 'dca', 'DCAR_020743' => 'dca', 'DCAR_026157' => 'dca', 'DCAR_032339' => 'dca', 'DCAR_032340' => 'dca', 'Dinv11200' => 'din', 'Dinv11201' => 'din', 'Dinv20631' => 'din', 'Dinv23182' => 'din', 'Dinv33466' => 'din', 'Dinv33583' => 'din', 'Dinv38565' => 'din', 'Duzib068G0200' => 'dzi', 'Duzib147G0132' => 'dzi', 'Duzib147G0635' => 'dzi', 'Duzib205G1670' => 'dzi', 'Duzib251G0606' => 'dzi', 'ECA232G3336' => 'eca', 'ECA232G3763' => 'eca', 'ECA232G4845' => 'eca', 'ECA234G1607' => 'eca', 'ECA246G0932' => 'eca', 'ECA247G0781' => 'eca', 'ECA247G1932' => 'eca', 'ECA247G2079' => 'eca', 'ECA247G3338' => 'eca', 'ECA247G4115' => 'eca', 'EL10Ac3g06552' => 'bvu', 'EL10Ac5g10721' => 'bvu', 'EL10Ac5g10722' => 'bvu', 'EL10Ac5g10723' => 'bvu', 'EL10Ac5g11361' => 'bvu', 'EL10Ac6g13553' => 'bvu', 'EL10As8g23872' => 'bvu', 'Eucgr.B00250' => 'egr', 'Eucgr.B00251' => 'egr', 'Eucgr.B03533' => 'egr', 'Eucgr.I02381' => 'egr', 'Eucgr.K02700' => 'egr', 'FAN02G0174' => 'fan', 'FAN02G3146' => 'fan', 'FAN04G1672' => 'fan', 'FAN04G2273' => 'fan', 'FAN05G2791' => 'fan', 'FAN05G4035' => 'fan', 'FAN07G0834' => 'fan', 'FAN08G1198' => 'fan', 'FAN09G4182' => 'fan', 'FAN12G0496' => 'fan', 'FAN13G1027' => 'fan', 'FAN13G2951' => 'fan', 'FAN14G0705' => 'fan', 'FAN14G0720' => 'fan', 'FAN17G0201' => 'fan', 'FAN17G2665' => 'fan', 'FAN18G1456' => 'fan', 'FAN18G1525' => 'fan', 'FAN18G3500' => 'fan', 'FAN28G2670' => 'fan', 'FvH4_1g12391' => 'fve', 'FvH4_4g23220' => 'fve', 'FvH4_5g08810' => 'fve', 'FvH4_5g28960' => 'fve', 'FvH4_6g42820' => 'fve', 'FvH4_6g51110' => 'fve', 'Glyma.02G051802' => 'gma', 'Glyma.04G185300' => 'gma', 'Glyma.05G202900' => 'gma', 'Glyma.08G010300' => 'gma', 'Glyma.16G131900' => 'gma', 'Glyma.17G087900' => 'gma', 'Gohir.A07G048600' => 'ghi', 'Gohir.A11G179000' => 'ghi', 'Gohir.A12G140900' => 'ghi', 'Gohir.A12G140950' => 'ghi', 'Gohir.A12G191700' => 'ghi', 'Gohir.A13G086300' => 'ghi', 'Gohir.D07G052900' => 'ghi', 'Gohir.D11G186600' => 'ghi', 'Gohir.D12G145575' => 'ghi', 'Gohir.D12G145650' => 'ghi', 'Gohir.D12G145725' => 'ghi', 'Gohir.D12G194050' => 'ghi', 'Gohir.D13G091800' => 'ghi', 'Gorai.001G055900' => 'gra', 'Gorai.007G198400' => 'gra', 'Gorai.008G157000' => 'gra', 'Gorai.008G157100' => 'gra', 'Gorai.008G208700' => 'gra', 'Gorai.010G138700' => 'gra', 'GSVIVG01000977001' => 'vvi', 'GSVIVG01007708001' => 'vvi', 'GSVIVG01008587001' => 'vvi', 'GSVIVG01018849001' => 'vvi', 'GSVIVG01032432001' => 'vvi', 'HanXRQChr02g0034131' => 'han', 'HanXRQChr02g0035981' => 'han', 'HanXRQChr02g0035991' => 'han', 'HanXRQChr05g0155611' => 'han', 'HanXRQChr05g0155621' => 'han', 'HanXRQChr08g0236501' => 'han', 'HanXRQChr09g0261321' => 'han', 'HanXRQChr09g0272081' => 'han', 'HanXRQChr10g0310741' => 'han', 'HanXRQChr11g0325591' => 'han', 'HanXRQChr12g0385691' => 'han', 'HanXRQChr13g0387801' => 'han', 'HanXRQChr15g0463011' => 'han', 'Haze_03826' => 'cav', 'Haze_03827' => 'cav', 'Haze_07183' => 'cav', 'Haze_07537' => 'cav', 'Haze_07539' => 'cav', 'Haze_12461' => 'cav', 'Haze_16115' => 'cav', 'Haze_16808' => 'cav', 'Haze_18531' => 'cav', 'Hma1.2p1_0046F.1_g026700' => 'hma', 'Hma1.2p1_0046F.1_g026710' => 'hma', 'Hma1.2p1_0168F.1_g074340' => 'hma', 'Hma1.2p1_0266F.1_g107030' => 'hma', 'Hma1.2p1_0266F.1_g107060' => 'hma', 'Hma1.2p1_0275F.1_g110510' => 'hma', 'Hma1.2p1_0592F.1_g185490' => 'hma', 'Hma1.2p1_0592F.1_g185500' => 'hma', 'Hma1.2p1_0592F.1_g185510' => 'hma', 'Hma1.2p1_0592F.1_g185520' => 'hma', 'Hma1.2p1_0592F.1_g185530' => 'hma', 'Hma1.2p1_0818F.1_g223450' => 'hma', 'HPP92_009708' => 'vpl', 'HPP92_009793' => 'vpl', 'HPP92_009796' => 'vpl', 'HPP92_009797' => 'vpl', 'HPP92_014940' => 'vpl', 'HPP92_014988' => 'vpl', 'Hund02463' => 'sun', 'Hund02760' => 'sun', 'Hund05071' => 'sun', 'Hund10108' => 'sun', 'Hund11204' => 'sun', 'Hund14016' => 'sun', 'Hund16464' => 'sun', 'Lalb_Chr09g0333391' => 'lal', 'Lalb_Chr11g0070461' => 'lal', 'Lalb_Chr12g0201671' => 'lal', 'Lalb_Chr13g0297161' => 'lal', 'Lj1g0002823' => 'lja', 'Lj3C1074T6' => 'lonja', 'Lj4A212T28' => 'lonja', 'Lj4g0005516' => 'lja', 'Lj4g0013705' => 'lja', 'Lj4g0027865' => 'lja', 'Lj5C92G16' => 'lonja', 'Lj5C92T12' => 'lonja', 'Lj7C596T3' => 'lonja', 'Lj9A446G59' => 'lonja', 'Lj9A482G21' => 'lonja', 'Lsat_1_v5_gn_1_28261' => 'lsa', 'Lsat_1_v5_gn_1_28281' => 'lsa', 'Lsat_1_v5_gn_1_32721' => 'lsa', 'Lsat_1_v5_gn_4_151760' => 'lsa', 'Lsat_1_v5_gn_4_2120' => 'lsa', 'Lsat_1_v5_gn_4_75761' => 'lsa', 'Lsat_1_v5_gn_5_10920' => 'lsa', 'Manes.02G099900' => 'mes', 'Manes.11G096200' => 'mes', 'Manes.12G007200' => 'mes', 'Manes.14G048300' => 'mes', 'Manes.17G114700' => 'mes', 'Mapoly0002s0070' => 'mpo', 'Mapoly0029s0099' => 'mpo', 'MBI07_g24742_MAGBIO' => 'mbi', 'MBI10_g27988_MAGBIO' => 'mbi', 'MBI11_g13057_MAGBIO' => 'mbi', 'MD02G1137200' => 'mdo', 'MD06G1137200' => 'mdo', 'MD07G1122300' => 'mdo', 'MD09G1078200' => 'mdo', 'MD13G1123700' => 'mdo', 'MD14G1151900' => 'mdo', 'MD17G1030900' => 'mdo', 'MD17G1068200' => 'mdo', 'MD17G1068600' => 'mdo', 'Medtr3g077540' => 'mtr', 'Medtr4g105530' => 'mtr', 'Medtr8g076580' => 'mtr', 'Medtr8g076590' => 'mtr', 'Medtr8g096410' => 'mtr', 'MELO3C016411.2' => 'cme', 'MELO3C017780.2' => 'cme', 'MELO3C022560.2' => 'cme', 'MELO3C026187.2' => 'cme', 'MELO3C026286.2' => 'cme', 'MELO3C032854.2' => 'cme', 'Migut.H02495' => 'egut', 'Migut.I00561' => 'egut', 'Migut.K01015' => 'egut', 'Migut.K01016' => 'egut', 'Migut.L00743' => 'egut', 'Migut.L00744' => 'egut', 'Migut.L00746' => 'egut', 'Migut.L00798' => 'egut', 'Migut.L00799' => 'egut', 'Migut.N02096' => 'egut', 'MSTRG.11259' => 'ama', 'MSTRG.23142' => 'ama', 'MSTRG.2499' => 'ama', 'Nitab4.5_0000003g0730' => 'nta', 'Nitab4.5_0000137g0020' => 'nta', 'Nitab4.5_0000721g0210' => 'nta', 'Nitab4.5_0000723g0050' => 'nta', 'Nitab4.5_0000913g0070' => 'nta', 'Nitab4.5_0001332g0040' => 'nta', 'Nitab4.5_0001771g0050' => 'nta', 'Nitab4.5_0001918g0050' => 'nta', 'Nitab4.5_0002686g0030' => 'nta', 'Nitab4.5_0003156g0020' => 'nta', 'Nitab4.5_0003383g0040' => 'nta', 'Nitab4.5_0003918g0010' => 'nta', 'Nitab4.5_0006760g0010' => 'nta', 'Nn1g05981' => 'nnu', 'Nn1g06288' => 'nnu', 'Nn3g16371' => 'nnu', 'Nn3g16786' => 'nnu', 'Nn4g22232' => 'nnu', 'Oeu005144.1' => 'oeu', 'Oeu005145.1' => 'oeu', 'Oeu011348.1' => 'oeu', 'Oeu016415.1' => 'oeu', 'Oeu023501.1' => 'oeu', 'Oeu044473.1' => 'oeu', 'Oeu048892.2' => 'oeu', 'Os01g0549200' => 'osa', 'Os02g0469300' => 'osa', 'Os04g0311100' => 'osa', 'Os06g0474900' => 'osa', 'Os10g0181700' => 'osa', 'Os11g0454800' => 'osa', 'Peaxi162Scf00037g00714' => 'pax', 'Peaxi162Scf00084g01217' => 'pax', 'Peaxi162Scf00257g00217' => 'pax', 'Peaxi162Scf00516g00215' => 'pax', 'Peaxi162Scf00689g00123' => 'pax', 'PGR044G2719' => 'pgr', 'PGR083G1360' => 'pgr', 'PGR102G2849' => 'pgr', 'PGR119G2534' => 'pgr', 'PGSC0003DMG400003538' => 'stu', 'PGSC0003DMG400028138' => 'stu', 'PGSC0003DMG400031732' => 'stu', 'PGSC0003DMG400038165' => 'stu', 'Phvul.002G284600' => 'pvu', 'Phvul.003G258200' => 'pvu', 'Phvul.009G176500' => 'pvu', 'Potri.003G167201' => 'ptr', 'Potri.005G118400' => 'ptr', 'Potri.012G089000' => 'ptr', 'Potri.012G102800' => 'ptr', 'Potri.015G079400' => 'ptr', 'Potri.015G100900' => 'ptr', 'Pp3c14_9810' => 'ppa', 'Pp3c15_10450' => 'ppa', 'Pp3c20_19150' => 'ppa', 'Pp3c23_12740' => 'ppa', 'Pp3c23_6310' => 'ppa', 'Pp3c24_3720' => 'ppa', 'Pp3c27_2580' => 'ppa', 'Pp3c9_8990' => 'ppa', 'PRCOL_00002854' => 'pco', 'Prupe.1G221200' => 'ppe', 'Prupe.3G289000' => 'ppe', 'Prupe.5G147000' => 'ppe', 'Prupe.6G157300' => 'ppe', 'Prupe.7G163400' => 'ppe', 'Psat0s2177g0040' => 'psa', 'Psat3g174760' => 'psa', 'Psat3g192160' => 'psa', 'Psat4g058520' => 'psa', 'Psat4g096840' => 'psa', 'Psat7g037320' => 'psa', 'PSO017G1274' => 'pso', 'PSO017G5166' => 'pso', 'PSO063G4558' => 'pso', 'PSO170G4458' => 'pso', 'PSO170G5005' => 'pso', 'PSO210G6156' => 'pso', 'PSO210G6635' => 'pso', 'PSO210G7397' => 'pso', 'PSO210G7700' => 'pso', 'PSO455G0035' => 'pso', 'PSO455G0180' => 'pso', 'PSO478G4515' => 'pso', 'PSO832G1305' => 'pso', 'PSO832G3489' => 'pso', 'QL02p075247' => 'qlo', 'QL03p051148' => 'qlo', 'QL05p010313' => 'qlo', 'QL06p034627' => 'qlo', 'QL10p001889' => 'qlo', 'QL10p010846' => 'qlo', 'RcHm_v2.0_Chr1g0350621' => 'rch', 'RcHm_v2.0_Chr1g0350641' => 'rch', 'RcHm_v2.0_Chr2g0092891' => 'rch', 'RcHm_v2.0_Chr2g0100251' => 'rch', 'RcHm_v2.0_Chr2g0158661' => 'rch', 'RcHm_v2.0_Chr2g0172741' => 'rch', 'RcHm_v2.0_Chr4g0429571' => 'rch', 'RcHm_v2.0_Chr5g0042471' => 'rch', 'RcHm_v2.0_Chr7g0189451' => 'rch', 'Rhsim08G0052000' => 'rsi', 'Rhsim08G0174400' => 'rsi', 'Rhsim08G0193200' => 'rsi', 'Rhsim10G0214800' => 'rsi', 'Rhsim10G0214900' => 'rsi', 'Rhsim10G0215000' => 'rsi', 'Rhsim12G0022900' => 'rsi', 'Rhsim12G0177500' => 'rsi', 'Rhsim12G0177700' => 'rsi', 'Sabra03G0122600' => 'sbr', 'Sabra05G0097400' => 'sbr', 'Sabra12G0064100' => 'sbr', 'Sabra15G0121300' => 'sbr', 'SalBow2G0642' => 'sbo', 'SalBow5G2667' => 'sbo', 'SalBow5G4873' => 'sbo', 'SalBow8G2395' => 'sbo', 'Sc03g0003290' => 'sci', 'Sc10g0010130' => 'sci', 'Sc22g0003650' => 'sci', 'Sed0001603' => 'sed', 'Sed0004259' => 'sed', 'Sed0006789' => 'sed', 'Sed0011838' => 'sed', 'Sed0012964' => 'sed', 'Sed0016383' => 'sed', 'Sed0019010' => 'sed', 'Sed0020188' => 'sed', 'SEGI_04702' => 'sgi', 'SEGI_17231' => 'sgi', 'SEGI_18877' => 'sgi', 'SEGI_25196' => 'sgi', 'SEGI_25515' => 'sgi', 'SEGI_28445' => 'sgi', 'SEGI_37452' => 'sgi', 'SGA_v2.0_scaffold188G40336' => 'sas', 'SGA_v2.0_scaffold228G43247' => 'sas', 'SGA_v2.0_scaffold280G46853' => 'sas', 'SGA_v2.0_scaffold34G13808' => 'sas', 'SGA_v2.0_scaffold40G15576' => 'sas', 'SGA_v2.0_scaffold611G53188' => 'sas', 'SGA_v2.0_scaffold78G25461' => 'sas', 'SGA_v2.0_scaffold90G27888' => 'sas', 'SHI08601' => 'shi', 'SHI08606' => 'shi', 'SHI17117' => 'shi', 'SHI17119' => 'shi', 'SMO118G0201' => 'smo', 'SMO169G0247' => 'smo', 'SMO176G0006' => 'smo', 'SMO176G0015' => 'smo', 'SMO202G0006' => 'smo', 'SMO240G0050' => 'smo', 'SMO286G0009' => 'smo', 'SMO338G0033' => 'smo', 'SMO356G0533' => 'smo', 'SMO364G0382' => 'smo', 'SMO367G0166' => 'smo', 'SMO367G1098' => 'smo', 'Solyc01g009920.3' => 'sly', 'Solyc01g099300.3' => 'sly', 'Solyc02g084700.3' => 'sly', 'Solyc03g097520.3' => 'sly', 'Solyc06g071580.3' => 'sly', 'Solyc10g081760.3' => 'sly', 'Sopen01g005480' => 'spe', 'Sopen01g042850' => 'spe', 'Sopen02g029370' => 'spe', 'Sopen03g028280' => 'spe', 'Sopen06g027870' => 'spe', 'Sopen10g032270' => 'spe', 'Sp5g18180' => 'spa', 'Sp6g12880' => 'spa', 'Sp6g30850' => 'spa', 'Sp7g22960' => 'spa', 'Sp7g34010' => 'spa', 'SpUn1326_0010' => 'spa', 'TAR371G0242' => 'tar', 'TAR622G0638' => 'tar', 'TAR628G1548' => 'tar', 'TAR629G1079' => 'tar', 'TAR629G3413' => 'tar', 'THA.LOC104804249' => 'tha', 'THA.LOC104808315' => 'tha', 'THA.LOC104809238' => 'tha', 'THA.LOC104825484' => 'tha', 'Thecc.01G025500' => 'tca', 'Thecc.03G015800' => 'tca', 'Thecc.03G018000' => 'tca', 'Thecc.03G134800' => 'tca', 'Thecc.04G014700' => 'tca', 'Thhalv10006991m.g' => 'esa', 'Thhalv10012707m.g' => 'esa', 'Thhalv10015739m.g' => 'esa', 'Thhalv10024553m.g' => 'esa', 'Thhalv10024673m.g' => 'esa', 'Thhalv10029187m.g' => 'esa', 'TPR.G12971' => 'tpr', 'TPR.G29396' => 'tpr', 'TPR.G33376' => 'tpr', 'TPR.G35508' => 'tpr', 'TPR.G35516' => 'tpr', 'TPR.G37317' => 'tpr', 'TPR.G37389' => 'tpr', 'TPR.G37523' => 'tpr', 'TPR.G559' => 'tpr', 'TWI14G0070' => 'twi', 'TWI14G0729' => 'twi', 'TWI18G0596' => 'twi', 'TWI39G0780' => 'twi', 'TWI39G0850' => 'twi', 'TWI73G1052' => 'twi', 'unitig_52.g17485' => 'ugi', 'unitig_61.g26355' => 'ugi', 'vmacro01040' => 'vma', 'vmacro16731' => 'vma', 'vmacro18270' => 'vma', 'vmacro19142' => 'vma', 'vmacro19407' => 'vma', 'vmacro19408' => 'vma', 'vmacro21899' => 'vma', 'vmacro21900' => 'vma', 'vmacro21901' => 'vma', 'VMungo0251G0490' => 'vmu', 'VMungo0251G1748' => 'vmu', 'VMungo1309G0421' => 'vmu', 'Zm00001eb086500' => 'zma', 'Zm00001eb150680' => 'zma', 'Zm00001eb162330' => 'zma', 'Zm00001eb203130' => 'zma', 'Zm00001eb369480' => 'zma', 'Zm00001eb382340' => 'zma', 'Zm00001eb416360' => 'zma' ), 'gf_id' => 'HOM05D000902', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000902' ), 'data_identifier' => 'HOM05D000902', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000902', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '663', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02470' => 'bna', 'A01p16260' => 'bna', 'A02p01680' => 'bna', 'A03p16600' => 'bna', 'A03p55660' => 'bna', 'A03p64160' => 'bna', 'A03p64170' => 'bna', 'A08p31900' => 'bna', 'A09p59530' => 'bna', 'A10p08230' => 'bna', 'A10p25090' => 'bna', 'Aa31LG3G7100' => 'aar', 'Aa31LG3G7110' => 'aar', 'Aa31LG6G13160' => 'aar', 'Aa31LG7G10770' => 'aar', 'Aa31LG7G3830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2723' => 'aag', 'Actinidia08045' => 'ach', 'Actinidia08888' => 'ach', 'Actinidia18333' => 'ach', 'Actinidia19334' => 'ach', 'Actinidia25552' => 'ach', 'Actinidia26089' => 'ach', 'Actinidia30615' => 'ach', 'Actinidia30616' => 'ach', 'Actinidia33083' => 'ach', 'Actinidia35762' => 'ach', 'Ah.02g110620' => 'amhyb', 'Ah.11g046390' => 'amhyb', 'AL1G31670' => 'aly', 'AL6G23730' => 'aly', 'AL7G14740' => 'aly', 'AL7G14750' => 'aly', 'AL7G14760' => 'aly', 'AL7G28220' => 'aly', 'AL8G24940' => 'aly', 'Aqoxy3G01665' => 'aox', 'Aqoxy3G02853' => 'aox', 'Aqoxy5G01513' => 'aox', 'Aqoxy5G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8SKA4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ75LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKDA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0LJZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7REX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZP4YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWX7I5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2QKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS0L9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPCD8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q161UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC7XCF' => 'arhy', 'AT1G19100' => 'ath', 'AT4G24970' => 'ath', 'AT4G36270' => 'ath', 'AT4G36280' => 'ath', 'AT4G36290' => 'ath', 'AT5G13130' => 'ath', 'AT5G50780' => 'ath', 'ATR0582G266' => 'atr', 'ATR0661G195' => 'atr', 'ATR1152G031' => 'atr', 'Atru.chr11.2382' => 'acertr', 'Atru.chr12.2337' => 'acertr', 'Atru.chr3.744' => 'acertr', 'Atru.chr6.1870' => 'acertr', 'Atru.chr9.2515' => 'acertr', 'AUR62004120' => 'cqu', 'AUR62005667' => 'cqu', 'AUR62007634' => 'cqu', 'AUR62008186' => 'cqu', 'AUR62008187' => 'cqu', 'AUR62008188' => 'cqu', 'AUR62027954' => 'cqu', 'AUR62028766' => 'cqu', 'AUR62028767' => 'cqu', 'AUR62028768' => 'cqu', 'AUR62028886' => 'cqu', 'AUR62029563' => 'cqu', 'AUR62038832' => 'cqu', 'BcaB01g04149' => 'bca', 'BcaB03g12940' => 'bca', 'BcaB03g13090' => 'bca', 'BcaB03g14466' => 'bca', 'BcaB05g24035' => 'bca', 'BcaC01g06050' => 'bca', 'BcaC04g19148' => 'bca', 'BcaC04g20761' => 'bca', 'BcaC06g32845' => 'bca', 'BcaC07g41274' => 'bca', 'BcaC09g50827' => 'bca', 'BcaNung00741' => 'bca', 'BcaNung00742' => 'bca', 'BcaNung01859' => 'bca', 'BcaNung03985' => 'bca', 'BcaNung03989' => 'bca', 'BcaNung05661' => 'bca', 'BolC1t00257H' => 'bol', 'BolC1t01956H' => 'bol', 'BolC2t06534H' => 'bol', 'BolC3t14334H' => 'bol', 'BolC5t30451H' => 'bol', 'BolC7t45880H' => 'bol', 'BolC7t46586H' => 'bol', 'BolC8t49301H' => 'bol', 'BolC8t51837H' => 'bol', 'BolC9t56822H' => 'bol', 'BolC9t59235H' => 'bol', 'BraA01t00234Z' => 'bra', 'BraA01t01563Z' => 'bra', 'BraA02t05147Z' => 'bra', 'BraA03t10947Z' => 'bra', 'BraA03t14633Z' => 'bra', 'BraA08t35112Z' => 'bra', 'BraA09t41330Z' => 'bra', 'BraA10t44570Z' => 'bra', 'C01p02670' => 'bna', 'C01p20260' => 'bna', 'C02p05890' => 'bna', 'C03p19530' => 'bna', 'C05p17470' => 'bna', 'C07p53900' => 'bna', 'C07p61630' => 'bna', 'C08p16800' => 'bna', 'C08p42810' => 'bna', 'C09p39480' => 'bna', 'C09p63980' => 'bna', 'CAN.G1001.7' => 'can', 'CAN.G1034.55' => 'can', 'CAN.G143.7' => 'can', 'CAN.G3340.1' => 'can', 'CAN.G358.19' => 'can', 'CAN.G373.2' => 'can', 'CAN.G674.16' => 'can', 'CAN.G674.17' => 'can', 'CAN.G674.18' => 'can', 'CAN.G732.2' => 'can', 'CAN.G732.3' => 'can', 'CAN.G993.39' => 'can', 'CANSAT01G2052' => 'cansat', 'CANSAT80G0070' => 'cansat', 'CANSAT80G0483' => 'cansat', 'CANSAT80G0625' => 'cansat', 'CARHR019690' => 'chi', 'CARHR080280' => 'chi', 'CARHR152750' => 'chi', 'CARHR152760' => 'chi', 'CARHR152770' => 'chi', 'CARHR200340' => 'chi', 'CARHR232370' => 'chi', 'CARHR244670' => 'chi', 'CARHR244680' => 'chi', 'CARHR257520' => 'chi', 'Carub.0001s1872' => 'cru', 'Carub.0006s1130' => 'cru', 'Carub.0007s0396' => 'cru', 'Carub.0007s0397' => 'cru', 'Carub.0007s1608' => 'cru', 'Carub.0008s1068' => 'cru', 'Carub.0008s1077' => 'cru', 'Ca_16158_v3' => 'car', 'Ca_17571_v3' => 'car', 'Ca_21936_v3' => 'car', 'Ca_22350_v3' => 'car', 'CBR_g22445' => 'cbr', 'CBR_g26290' => 'cbr', 'Cc04_g09610' => 'ccan', 'Cc04_g12280' => 'ccan', 'Cc07_g10230' => 'ccan', 'CDE02G0093' => 'cde', 'CDE02G0701' => 'cde', 'CDE04G1050' => 'cde', 'CDE05G1833' => 'cde', 'CDE05G3058' => 'cde', 'CDE05G3380' => 'cde', 'CDE06G0536' => 'cde', 'Cfa006923' => 'cfa', 'Cfa009402' => 'cfa', 'Cfa018751' => 'cfa', 'Cfa019164' => 'cfa', 'Cfa022935' => 'cfa', 'Ciclev10019081m.g' => 'ccl', 'Ciclev10025076m.g' => 'ccl', 'Ciclev10030712m.g' => 'ccl', 'Ciclev10033760m.g' => 'ccl', 'CiPaw.05G105600' => 'cil', 'CiPaw.08G136700' => 'cil', 'CiPaw.11G003900' => 'cil', 'CiPaw.11G023700' => 'cil', 'CiPaw.12G003700' => 'cil', 'ClCG06G017100' => 'cla', 'ClCG06G018110' => 'cla', 'ClCG07G008800' => 'cla', 'ClCG07G015330' => 'cla', 'COL.COLO4_13698' => 'col', 'COL.COLO4_16659' => 'col', 'COL.COLO4_21986' => 'col', 'COL.COLO4_24049' => 'col', 'COL.COLO4_29061' => 'col', 'COL.COLO4_29075' => 'col', 'COL.COLO4_30094' => 'col', 'Cpa.g.c33689' => 'cpa', 'Cpa.g.sc108.39' => 'cpa', 'Cpa.g.sc108.41' => 'cpa', 'Cpa.g.sc1163.1' => 'cpa', 'Cpa.g.sc4.155' => 'cpa', 'Cpa.g.sc6.194' => 'cpa', 'CsaV3_1G000340' => 'csa', 'CsaV3_1G001400' => 'csa', 'CsaV3_4G002220' => 'csa', 'CsaV3_4G005370' => 'csa', 'CSS0007487' => 'camsi', 'CSS0008066' => 'camsi', 'CSS0009120' => 'camsi', 'CSS0015512' => 'camsi', 'CSS0022409' => 'camsi', 'CSS0025358' => 'camsi', 'CSS0044547' => 'camsi', 'DCAR_013057' => 'dca', 'DCAR_015058' => 'dca', 'DCAR_016027' => 'dca', 'DCAR_017327' => 'dca', 'DCAR_020743' => 'dca', 'DCAR_026157' => 'dca', 'DCAR_032339' => 'dca', 'DCAR_032340' => 'dca', 'Dinv11200' => 'din', 'Dinv11201' => 'din', 'Dinv20631' => 'din', 'Dinv23182' => 'din', 'Dinv33466' => 'din', 'Dinv33583' => 'din', 'Dinv38565' => 'din', 'Duzib068G0200' => 'dzi', 'Duzib147G0132' => 'dzi', 'Duzib147G0635' => 'dzi', 'Duzib205G1670' => 'dzi', 'Duzib251G0606' => 'dzi', 'ECA232G3336' => 'eca', 'ECA232G3763' => 'eca', 'ECA232G4845' => 'eca', 'ECA234G1607' => 'eca', 'ECA246G0932' => 'eca', 'ECA247G0781' => 'eca', 'ECA247G1932' => 'eca', 'ECA247G2079' => 'eca', 'ECA247G3338' => 'eca', 'ECA247G4115' => 'eca', 'EL10Ac3g06552' => 'bvu', 'EL10Ac5g10721' => 'bvu', 'EL10Ac5g10722' => 'bvu', 'EL10Ac5g10723' => 'bvu', 'EL10Ac5g11361' => 'bvu', 'EL10Ac6g13553' => 'bvu', 'EL10As8g23872' => 'bvu', 'Eucgr.B00250' => 'egr', 'Eucgr.B00251' => 'egr', 'Eucgr.B03533' => 'egr', 'Eucgr.I02381' => 'egr', 'Eucgr.K02700' => 'egr', 'FAN02G0174' => 'fan', 'FAN02G3146' => 'fan', 'FAN04G1672' => 'fan', 'FAN04G2273' => 'fan', 'FAN05G2791' => 'fan', 'FAN05G4035' => 'fan', 'FAN07G0834' => 'fan', 'FAN08G1198' => 'fan', 'FAN09G4182' => 'fan', 'FAN12G0496' => 'fan', 'FAN13G1027' => 'fan', 'FAN13G2951' => 'fan', 'FAN14G0705' => 'fan', 'FAN14G0720' => 'fan', 'FAN17G0201' => 'fan', 'FAN17G2665' => 'fan', 'FAN18G1456' => 'fan', 'FAN18G1525' => 'fan', 'FAN18G3500' => 'fan', 'FAN28G2670' => 'fan', 'FvH4_1g12391' => 'fve', 'FvH4_4g23220' => 'fve', 'FvH4_5g08810' => 'fve', 'FvH4_5g28960' => 'fve', 'FvH4_6g42820' => 'fve', 'FvH4_6g51110' => 'fve', 'Glyma.02G051802' => 'gma', 'Glyma.04G185300' => 'gma', 'Glyma.05G202900' => 'gma', 'Glyma.08G010300' => 'gma', 'Glyma.16G131900' => 'gma', 'Glyma.17G087900' => 'gma', 'Gohir.A07G048600' => 'ghi', 'Gohir.A11G179000' => 'ghi', 'Gohir.A12G140900' => 'ghi', 'Gohir.A12G140950' => 'ghi', 'Gohir.A12G191700' => 'ghi', 'Gohir.A13G086300' => 'ghi', 'Gohir.D07G052900' => 'ghi', 'Gohir.D11G186600' => 'ghi', 'Gohir.D12G145575' => 'ghi', 'Gohir.D12G145650' => 'ghi', 'Gohir.D12G145725' => 'ghi', 'Gohir.D12G194050' => 'ghi', 'Gohir.D13G091800' => 'ghi', 'Gorai.001G055900' => 'gra', 'Gorai.007G198400' => 'gra', 'Gorai.008G157000' => 'gra', 'Gorai.008G157100' => 'gra', 'Gorai.008G208700' => 'gra', 'Gorai.010G138700' => 'gra', 'GSVIVG01000977001' => 'vvi', 'GSVIVG01007708001' => 'vvi', 'GSVIVG01008587001' => 'vvi', 'GSVIVG01018849001' => 'vvi', 'GSVIVG01032432001' => 'vvi', 'HanXRQChr02g0034131' => 'han', 'HanXRQChr02g0035981' => 'han', 'HanXRQChr02g0035991' => 'han', 'HanXRQChr05g0155611' => 'han', 'HanXRQChr05g0155621' => 'han', 'HanXRQChr08g0236501' => 'han', 'HanXRQChr09g0261321' => 'han', 'HanXRQChr09g0272081' => 'han', 'HanXRQChr10g0310741' => 'han', 'HanXRQChr11g0325591' => 'han', 'HanXRQChr12g0385691' => 'han', 'HanXRQChr13g0387801' => 'han', 'HanXRQChr15g0463011' => 'han', 'Haze_03826' => 'cav', 'Haze_03827' => 'cav', 'Haze_07183' => 'cav', 'Haze_07537' => 'cav', 'Haze_07539' => 'cav', 'Haze_12461' => 'cav', 'Haze_16115' => 'cav', 'Haze_16808' => 'cav', 'Haze_18531' => 'cav', 'Hma1.2p1_0046F.1_g026700' => 'hma', 'Hma1.2p1_0046F.1_g026710' => 'hma', 'Hma1.2p1_0168F.1_g074340' => 'hma', 'Hma1.2p1_0266F.1_g107030' => 'hma', 'Hma1.2p1_0266F.1_g107060' => 'hma', 'Hma1.2p1_0275F.1_g110510' => 'hma', 'Hma1.2p1_0592F.1_g185490' => 'hma', 'Hma1.2p1_0592F.1_g185500' => 'hma', 'Hma1.2p1_0592F.1_g185510' => 'hma', 'Hma1.2p1_0592F.1_g185520' => 'hma', 'Hma1.2p1_0592F.1_g185530' => 'hma', 'Hma1.2p1_0818F.1_g223450' => 'hma', 'HPP92_009708' => 'vpl', 'HPP92_009793' => 'vpl', 'HPP92_009796' => 'vpl', 'HPP92_009797' => 'vpl', 'HPP92_014940' => 'vpl', 'HPP92_014988' => 'vpl', 'Hund02463' => 'sun', 'Hund02760' => 'sun', 'Hund05071' => 'sun', 'Hund10108' => 'sun', 'Hund11204' => 'sun', 'Hund14016' => 'sun', 'Hund16464' => 'sun', 'Lalb_Chr09g0333391' => 'lal', 'Lalb_Chr11g0070461' => 'lal', 'Lalb_Chr12g0201671' => 'lal', 'Lalb_Chr13g0297161' => 'lal', 'Lj1g0002823' => 'lja', 'Lj3C1074T6' => 'lonja', 'Lj4A212T28' => 'lonja', 'Lj4g0005516' => 'lja', 'Lj4g0013705' => 'lja', 'Lj4g0027865' => 'lja', 'Lj5C92G16' => 'lonja', 'Lj5C92T12' => 'lonja', 'Lj7C596T3' => 'lonja', 'Lj9A446G59' => 'lonja', 'Lj9A482G21' => 'lonja', 'Lsat_1_v5_gn_1_28261' => 'lsa', 'Lsat_1_v5_gn_1_28281' => 'lsa', 'Lsat_1_v5_gn_1_32721' => 'lsa', 'Lsat_1_v5_gn_4_151760' => 'lsa', 'Lsat_1_v5_gn_4_2120' => 'lsa', 'Lsat_1_v5_gn_4_75761' => 'lsa', 'Lsat_1_v5_gn_5_10920' => 'lsa', 'Manes.02G099900' => 'mes', 'Manes.11G096200' => 'mes', 'Manes.12G007200' => 'mes', 'Manes.14G048300' => 'mes', 'Manes.17G114700' => 'mes', 'Mapoly0002s0070' => 'mpo', 'Mapoly0029s0099' => 'mpo', 'MBI07_g24742_MAGBIO' => 'mbi', 'MBI10_g27988_MAGBIO' => 'mbi', 'MBI11_g13057_MAGBIO' => 'mbi', 'MD02G1137200' => 'mdo', 'MD06G1137200' => 'mdo', 'MD07G1122300' => 'mdo', 'MD09G1078200' => 'mdo', 'MD13G1123700' => 'mdo', 'MD14G1151900' => 'mdo', 'MD17G1030900' => 'mdo', 'MD17G1068200' => 'mdo', 'MD17G1068600' => 'mdo', 'Medtr3g077540' => 'mtr', 'Medtr4g105530' => 'mtr', 'Medtr8g076580' => 'mtr', 'Medtr8g076590' => 'mtr', 'Medtr8g096410' => 'mtr', 'MELO3C016411.2' => 'cme', 'MELO3C017780.2' => 'cme', 'MELO3C022560.2' => 'cme', 'MELO3C026187.2' => 'cme', 'MELO3C026286.2' => 'cme', 'MELO3C032854.2' => 'cme', 'Migut.H02495' => 'egut', 'Migut.I00561' => 'egut', 'Migut.K01015' => 'egut', 'Migut.K01016' => 'egut', 'Migut.L00743' => 'egut', 'Migut.L00744' => 'egut', 'Migut.L00746' => 'egut', 'Migut.L00798' => 'egut', 'Migut.L00799' => 'egut', 'Migut.N02096' => 'egut', 'MSTRG.11259' => 'ama', 'MSTRG.23142' => 'ama', 'MSTRG.2499' => 'ama', 'Nitab4.5_0000003g0730' => 'nta', 'Nitab4.5_0000137g0020' => 'nta', 'Nitab4.5_0000721g0210' => 'nta', 'Nitab4.5_0000723g0050' => 'nta', 'Nitab4.5_0000913g0070' => 'nta', 'Nitab4.5_0001332g0040' => 'nta', 'Nitab4.5_0001771g0050' => 'nta', 'Nitab4.5_0001918g0050' => 'nta', 'Nitab4.5_0002686g0030' => 'nta', 'Nitab4.5_0003156g0020' => 'nta', 'Nitab4.5_0003383g0040' => 'nta', 'Nitab4.5_0003918g0010' => 'nta', 'Nitab4.5_0006760g0010' => 'nta', 'Nn1g05981' => 'nnu', 'Nn1g06288' => 'nnu', 'Nn3g16371' => 'nnu', 'Nn3g16786' => 'nnu', 'Nn4g22232' => 'nnu', 'Oeu005144.1' => 'oeu', 'Oeu005145.1' => 'oeu', 'Oeu011348.1' => 'oeu', 'Oeu016415.1' => 'oeu', 'Oeu023501.1' => 'oeu', 'Oeu044473.1' => 'oeu', 'Oeu048892.2' => 'oeu', 'Os01g0549200' => 'osa', 'Os02g0469300' => 'osa', 'Os04g0311100' => 'osa', 'Os06g0474900' => 'osa', 'Os10g0181700' => 'osa', 'Os11g0454800' => 'osa', 'Peaxi162Scf00037g00714' => 'pax', 'Peaxi162Scf00084g01217' => 'pax', 'Peaxi162Scf00257g00217' => 'pax', 'Peaxi162Scf00516g00215' => 'pax', 'Peaxi162Scf00689g00123' => 'pax', 'PGR044G2719' => 'pgr', 'PGR083G1360' => 'pgr', 'PGR102G2849' => 'pgr', 'PGR119G2534' => 'pgr', 'PGSC0003DMG400003538' => 'stu', 'PGSC0003DMG400028138' => 'stu', 'PGSC0003DMG400031732' => 'stu', 'PGSC0003DMG400038165' => 'stu', 'Phvul.002G284600' => 'pvu', 'Phvul.003G258200' => 'pvu', 'Phvul.009G176500' => 'pvu', 'Potri.003G167201' => 'ptr', 'Potri.005G118400' => 'ptr', 'Potri.012G089000' => 'ptr', 'Potri.012G102800' => 'ptr', 'Potri.015G079400' => 'ptr', 'Potri.015G100900' => 'ptr', 'Pp3c14_9810' => 'ppa', 'Pp3c15_10450' => 'ppa', 'Pp3c20_19150' => 'ppa', 'Pp3c23_12740' => 'ppa', 'Pp3c23_6310' => 'ppa', 'Pp3c24_3720' => 'ppa', 'Pp3c27_2580' => 'ppa', 'Pp3c9_8990' => 'ppa', 'PRCOL_00002854' => 'pco', 'Prupe.1G221200' => 'ppe', 'Prupe.3G289000' => 'ppe', 'Prupe.5G147000' => 'ppe', 'Prupe.6G157300' => 'ppe', 'Prupe.7G163400' => 'ppe', 'Psat0s2177g0040' => 'psa', 'Psat3g174760' => 'psa', 'Psat3g192160' => 'psa', 'Psat4g058520' => 'psa', 'Psat4g096840' => 'psa', 'Psat7g037320' => 'psa', 'PSO017G1274' => 'pso', 'PSO017G5166' => 'pso', 'PSO063G4558' => 'pso', 'PSO170G4458' => 'pso', 'PSO170G5005' => 'pso', 'PSO210G6156' => 'pso', 'PSO210G6635' => 'pso', 'PSO210G7397' => 'pso', 'PSO210G7700' => 'pso', 'PSO455G0035' => 'pso', 'PSO455G0180' => 'pso', 'PSO478G4515' => 'pso', 'PSO832G1305' => 'pso', 'PSO832G3489' => 'pso', 'QL02p075247' => 'qlo', 'QL03p051148' => 'qlo', 'QL05p010313' => 'qlo', 'QL06p034627' => 'qlo', 'QL10p001889' => 'qlo', 'QL10p010846' => 'qlo', 'RcHm_v2.0_Chr1g0350621' => 'rch', 'RcHm_v2.0_Chr1g0350641' => 'rch', 'RcHm_v2.0_Chr2g0092891' => 'rch', 'RcHm_v2.0_Chr2g0100251' => 'rch', 'RcHm_v2.0_Chr2g0158661' => 'rch', 'RcHm_v2.0_Chr2g0172741' => 'rch', 'RcHm_v2.0_Chr4g0429571' => 'rch', 'RcHm_v2.0_Chr5g0042471' => 'rch', 'RcHm_v2.0_Chr7g0189451' => 'rch', 'Rhsim08G0052000' => 'rsi', 'Rhsim08G0174400' => 'rsi', 'Rhsim08G0193200' => 'rsi', 'Rhsim10G0214800' => 'rsi', 'Rhsim10G0214900' => 'rsi', 'Rhsim10G0215000' => 'rsi', 'Rhsim12G0022900' => 'rsi', 'Rhsim12G0177500' => 'rsi', 'Rhsim12G0177700' => 'rsi', 'Sabra03G0122600' => 'sbr', 'Sabra05G0097400' => 'sbr', 'Sabra12G0064100' => 'sbr', 'Sabra15G0121300' => 'sbr', 'SalBow2G0642' => 'sbo', 'SalBow5G2667' => 'sbo', 'SalBow5G4873' => 'sbo', 'SalBow8G2395' => 'sbo', 'Sc03g0003290' => 'sci', 'Sc10g0010130' => 'sci', 'Sc22g0003650' => 'sci', 'Sed0001603' => 'sed', 'Sed0004259' => 'sed', 'Sed0006789' => 'sed', 'Sed0011838' => 'sed', 'Sed0012964' => 'sed', 'Sed0016383' => 'sed', 'Sed0019010' => 'sed', 'Sed0020188' => 'sed', 'SEGI_04702' => 'sgi', 'SEGI_17231' => 'sgi', 'SEGI_18877' => 'sgi', 'SEGI_25196' => 'sgi', 'SEGI_25515' => 'sgi', 'SEGI_28445' => 'sgi', 'SEGI_37452' => 'sgi', 'SGA_v2.0_scaffold188G40336' => 'sas', 'SGA_v2.0_scaffold228G43247' => 'sas', 'SGA_v2.0_scaffold280G46853' => 'sas', 'SGA_v2.0_scaffold34G13808' => 'sas', 'SGA_v2.0_scaffold40G15576' => 'sas', 'SGA_v2.0_scaffold611G53188' => 'sas', 'SGA_v2.0_scaffold78G25461' => 'sas', 'SGA_v2.0_scaffold90G27888' => 'sas', 'SHI08601' => 'shi', 'SHI08606' => 'shi', 'SHI17117' => 'shi', 'SHI17119' => 'shi', 'SMO118G0201' => 'smo', 'SMO169G0247' => 'smo', 'SMO176G0006' => 'smo', 'SMO176G0015' => 'smo', 'SMO202G0006' => 'smo', 'SMO240G0050' => 'smo', 'SMO286G0009' => 'smo', 'SMO338G0033' => 'smo', 'SMO356G0533' => 'smo', 'SMO364G0382' => 'smo', 'SMO367G0166' => 'smo', 'SMO367G1098' => 'smo', 'Solyc01g009920.3' => 'sly', 'Solyc01g099300.3' => 'sly', 'Solyc02g084700.3' => 'sly', 'Solyc03g097520.3' => 'sly', 'Solyc06g071580.3' => 'sly', 'Solyc10g081760.3' => 'sly', 'Sopen01g005480' => 'spe', 'Sopen01g042850' => 'spe', 'Sopen02g029370' => 'spe', 'Sopen03g028280' => 'spe', 'Sopen06g027870' => 'spe', 'Sopen10g032270' => 'spe', 'Sp5g18180' => 'spa', 'Sp6g12880' => 'spa', 'Sp6g30850' => 'spa', 'Sp7g22960' => 'spa', 'Sp7g34010' => 'spa', 'SpUn1326_0010' => 'spa', 'TAR371G0242' => 'tar', 'TAR622G0638' => 'tar', 'TAR628G1548' => 'tar', 'TAR629G1079' => 'tar', 'TAR629G3413' => 'tar', 'THA.LOC104804249' => 'tha', 'THA.LOC104808315' => 'tha', 'THA.LOC104809238' => 'tha', 'THA.LOC104825484' => 'tha', 'Thecc.01G025500' => 'tca', 'Thecc.03G015800' => 'tca', 'Thecc.03G018000' => 'tca', 'Thecc.03G134800' => 'tca', 'Thecc.04G014700' => 'tca', 'Thhalv10006991m.g' => 'esa', 'Thhalv10012707m.g' => 'esa', 'Thhalv10015739m.g' => 'esa', 'Thhalv10024553m.g' => 'esa', 'Thhalv10024673m.g' => 'esa', 'Thhalv10029187m.g' => 'esa', 'TPR.G12971' => 'tpr', 'TPR.G29396' => 'tpr', 'TPR.G33376' => 'tpr', 'TPR.G35508' => 'tpr', 'TPR.G35516' => 'tpr', 'TPR.G37317' => 'tpr', 'TPR.G37389' => 'tpr', 'TPR.G37523' => 'tpr', 'TPR.G559' => 'tpr', 'TWI14G0070' => 'twi', 'TWI14G0729' => 'twi', 'TWI18G0596' => 'twi', 'TWI39G0780' => 'twi', 'TWI39G0850' => 'twi', 'TWI73G1052' => 'twi', 'unitig_52.g17485' => 'ugi', 'unitig_61.g26355' => 'ugi', 'vmacro01040' => 'vma', 'vmacro16731' => 'vma', 'vmacro18270' => 'vma', 'vmacro19142' => 'vma', 'vmacro19407' => 'vma', 'vmacro19408' => 'vma', 'vmacro21899' => 'vma', 'vmacro21900' => 'vma', 'vmacro21901' => 'vma', 'VMungo0251G0490' => 'vmu', 'VMungo0251G1748' => 'vmu', 'VMungo1309G0421' => 'vmu', 'Zm00001eb086500' => 'zma', 'Zm00001eb150680' => 'zma', 'Zm00001eb162330' => 'zma', 'Zm00001eb203130' => 'zma', 'Zm00001eb369480' => 'zma', 'Zm00001eb382340' => 'zma', 'Zm00001eb416360' => 'zma' ) $gf_id = 'HOM05D000902' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000902' ) $data_identifier = 'HOM05D000902' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 13, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 10, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 6, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 9, 'hma' => (int) 12, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 4, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 6, 'ppa' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 6, 'rch' => (int) 9, 'rsi' => (int) 9, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 12, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 3, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416360' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000902', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '663', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02470' => 'bna', 'A01p16260' => 'bna', 'A02p01680' => 'bna', 'A03p16600' => 'bna', 'A03p55660' => 'bna', 'A03p64160' => 'bna', 'A03p64170' => 'bna', 'A08p31900' => 'bna', 'A09p59530' => 'bna', 'A10p08230' => 'bna', 'A10p25090' => 'bna', 'Aa31LG3G7100' => 'aar', 'Aa31LG3G7110' => 'aar', 'Aa31LG6G13160' => 'aar', 'Aa31LG7G10770' => 'aar', 'Aa31LG7G3830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2723' => 'aag', 'Actinidia08045' => 'ach', 'Actinidia08888' => 'ach', 'Actinidia18333' => 'ach', 'Actinidia19334' => 'ach', 'Actinidia25552' => 'ach', 'Actinidia26089' => 'ach', 'Actinidia30615' => 'ach', 'Actinidia30616' => 'ach', 'Actinidia33083' => 'ach', 'Actinidia35762' => 'ach', 'Ah.02g110620' => 'amhyb', 'Ah.11g046390' => 'amhyb', 'AL1G31670' => 'aly', 'AL6G23730' => 'aly', 'AL7G14740' => 'aly', 'AL7G14750' => 'aly', 'AL7G14760' => 'aly', 'AL7G28220' => 'aly', 'AL8G24940' => 'aly', 'Aqoxy3G01665' => 'aox', 'Aqoxy3G02853' => 'aox', 'Aqoxy5G01513' => 'aox', 'Aqoxy5G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8SKA4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ75LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKDA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0LJZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7REX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZP4YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWX7I5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2QKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS0L9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPCD8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q161UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC7XCF' => 'arhy', 'AT1G19100' => 'ath', 'AT4G24970' => 'ath', 'AT4G36270' => 'ath', 'AT4G36280' => 'ath', 'AT4G36290' => 'ath', 'AT5G13130' => 'ath', 'AT5G50780' => 'ath', 'ATR0582G266' => 'atr', 'ATR0661G195' => 'atr', 'ATR1152G031' => 'atr', 'Atru.chr11.2382' => 'acertr', 'Atru.chr12.2337' => 'acertr', 'Atru.chr3.744' => 'acertr', 'Atru.chr6.1870' => 'acertr', 'Atru.chr9.2515' => 'acertr', 'AUR62004120' => 'cqu', 'AUR62005667' => 'cqu', 'AUR62007634' => 'cqu', 'AUR62008186' => 'cqu', 'AUR62008187' => 'cqu', 'AUR62008188' => 'cqu', 'AUR62027954' => 'cqu', 'AUR62028766' => 'cqu', 'AUR62028767' => 'cqu', 'AUR62028768' => 'cqu', 'AUR62028886' => 'cqu', 'AUR62029563' => 'cqu', 'AUR62038832' => 'cqu', 'BcaB01g04149' => 'bca', 'BcaB03g12940' => 'bca', 'BcaB03g13090' => 'bca', 'BcaB03g14466' => 'bca', 'BcaB05g24035' => 'bca', 'BcaC01g06050' => 'bca', 'BcaC04g19148' => 'bca', 'BcaC04g20761' => 'bca', 'BcaC06g32845' => 'bca', 'BcaC07g41274' => 'bca', 'BcaC09g50827' => 'bca', 'BcaNung00741' => 'bca', 'BcaNung00742' => 'bca', 'BcaNung01859' => 'bca', 'BcaNung03985' => 'bca', 'BcaNung03989' => 'bca', 'BcaNung05661' => 'bca', 'BolC1t00257H' => 'bol', 'BolC1t01956H' => 'bol', 'BolC2t06534H' => 'bol', 'BolC3t14334H' => 'bol', 'BolC5t30451H' => 'bol', 'BolC7t45880H' => 'bol', 'BolC7t46586H' => 'bol', 'BolC8t49301H' => 'bol', 'BolC8t51837H' => 'bol', 'BolC9t56822H' => 'bol', 'BolC9t59235H' => 'bol', 'BraA01t00234Z' => 'bra', 'BraA01t01563Z' => 'bra', 'BraA02t05147Z' => 'bra', 'BraA03t10947Z' => 'bra', 'BraA03t14633Z' => 'bra', 'BraA08t35112Z' => 'bra', 'BraA09t41330Z' => 'bra', 'BraA10t44570Z' => 'bra', 'C01p02670' => 'bna', 'C01p20260' => 'bna', 'C02p05890' => 'bna', 'C03p19530' => 'bna', 'C05p17470' => 'bna', 'C07p53900' => 'bna', 'C07p61630' => 'bna', 'C08p16800' => 'bna', 'C08p42810' => 'bna', 'C09p39480' => 'bna', 'C09p63980' => 'bna', 'CAN.G1001.7' => 'can', 'CAN.G1034.55' => 'can', 'CAN.G143.7' => 'can', 'CAN.G3340.1' => 'can', 'CAN.G358.19' => 'can', 'CAN.G373.2' => 'can', 'CAN.G674.16' => 'can', 'CAN.G674.17' => 'can', 'CAN.G674.18' => 'can', 'CAN.G732.2' => 'can', 'CAN.G732.3' => 'can', 'CAN.G993.39' => 'can', 'CANSAT01G2052' => 'cansat', 'CANSAT80G0070' => 'cansat', 'CANSAT80G0483' => 'cansat', 'CANSAT80G0625' => 'cansat', 'CARHR019690' => 'chi', 'CARHR080280' => 'chi', 'CARHR152750' => 'chi', 'CARHR152760' => 'chi', 'CARHR152770' => 'chi', 'CARHR200340' => 'chi', 'CARHR232370' => 'chi', 'CARHR244670' => 'chi', 'CARHR244680' => 'chi', 'CARHR257520' => 'chi', 'Carub.0001s1872' => 'cru', 'Carub.0006s1130' => 'cru', 'Carub.0007s0396' => 'cru', 'Carub.0007s0397' => 'cru', 'Carub.0007s1608' => 'cru', 'Carub.0008s1068' => 'cru', 'Carub.0008s1077' => 'cru', 'Ca_16158_v3' => 'car', 'Ca_17571_v3' => 'car', 'Ca_21936_v3' => 'car', 'Ca_22350_v3' => 'car', 'CBR_g22445' => 'cbr', 'CBR_g26290' => 'cbr', 'Cc04_g09610' => 'ccan', 'Cc04_g12280' => 'ccan', 'Cc07_g10230' => 'ccan', 'CDE02G0093' => 'cde', 'CDE02G0701' => 'cde', 'CDE04G1050' => 'cde', 'CDE05G1833' => 'cde', 'CDE05G3058' => 'cde', 'CDE05G3380' => 'cde', 'CDE06G0536' => 'cde', 'Cfa006923' => 'cfa', 'Cfa009402' => 'cfa', 'Cfa018751' => 'cfa', 'Cfa019164' => 'cfa', 'Cfa022935' => 'cfa', 'Ciclev10019081m.g' => 'ccl', 'Ciclev10025076m.g' => 'ccl', 'Ciclev10030712m.g' => 'ccl', 'Ciclev10033760m.g' => 'ccl', 'CiPaw.05G105600' => 'cil', 'CiPaw.08G136700' => 'cil', 'CiPaw.11G003900' => 'cil', 'CiPaw.11G023700' => 'cil', 'CiPaw.12G003700' => 'cil', 'ClCG06G017100' => 'cla', 'ClCG06G018110' => 'cla', 'ClCG07G008800' => 'cla', 'ClCG07G015330' => 'cla', 'COL.COLO4_13698' => 'col', 'COL.COLO4_16659' => 'col', 'COL.COLO4_21986' => 'col', 'COL.COLO4_24049' => 'col', 'COL.COLO4_29061' => 'col', 'COL.COLO4_29075' => 'col', 'COL.COLO4_30094' => 'col', 'Cpa.g.c33689' => 'cpa', 'Cpa.g.sc108.39' => 'cpa', 'Cpa.g.sc108.41' => 'cpa', 'Cpa.g.sc1163.1' => 'cpa', 'Cpa.g.sc4.155' => 'cpa', 'Cpa.g.sc6.194' => 'cpa', 'CsaV3_1G000340' => 'csa', 'CsaV3_1G001400' => 'csa', 'CsaV3_4G002220' => 'csa', 'CsaV3_4G005370' => 'csa', 'CSS0007487' => 'camsi', 'CSS0008066' => 'camsi', 'CSS0009120' => 'camsi', 'CSS0015512' => 'camsi', 'CSS0022409' => 'camsi', 'CSS0025358' => 'camsi', 'CSS0044547' => 'camsi', 'DCAR_013057' => 'dca', 'DCAR_015058' => 'dca', 'DCAR_016027' => 'dca', 'DCAR_017327' => 'dca', 'DCAR_020743' => 'dca', 'DCAR_026157' => 'dca', 'DCAR_032339' => 'dca', 'DCAR_032340' => 'dca', 'Dinv11200' => 'din', 'Dinv11201' => 'din', 'Dinv20631' => 'din', 'Dinv23182' => 'din', 'Dinv33466' => 'din', 'Dinv33583' => 'din', 'Dinv38565' => 'din', 'Duzib068G0200' => 'dzi', 'Duzib147G0132' => 'dzi', 'Duzib147G0635' => 'dzi', 'Duzib205G1670' => 'dzi', 'Duzib251G0606' => 'dzi', 'ECA232G3336' => 'eca', 'ECA232G3763' => 'eca', 'ECA232G4845' => 'eca', 'ECA234G1607' => 'eca', 'ECA246G0932' => 'eca', 'ECA247G0781' => 'eca', 'ECA247G1932' => 'eca', 'ECA247G2079' => 'eca', 'ECA247G3338' => 'eca', 'ECA247G4115' => 'eca', 'EL10Ac3g06552' => 'bvu', 'EL10Ac5g10721' => 'bvu', 'EL10Ac5g10722' => 'bvu', 'EL10Ac5g10723' => 'bvu', 'EL10Ac5g11361' => 'bvu', 'EL10Ac6g13553' => 'bvu', 'EL10As8g23872' => 'bvu', 'Eucgr.B00250' => 'egr', 'Eucgr.B00251' => 'egr', 'Eucgr.B03533' => 'egr', 'Eucgr.I02381' => 'egr', 'Eucgr.K02700' => 'egr', 'FAN02G0174' => 'fan', 'FAN02G3146' => 'fan', 'FAN04G1672' => 'fan', 'FAN04G2273' => 'fan', 'FAN05G2791' => 'fan', 'FAN05G4035' => 'fan', 'FAN07G0834' => 'fan', 'FAN08G1198' => 'fan', 'FAN09G4182' => 'fan', 'FAN12G0496' => 'fan', 'FAN13G1027' => 'fan', 'FAN13G2951' => 'fan', 'FAN14G0705' => 'fan', 'FAN14G0720' => 'fan', 'FAN17G0201' => 'fan', 'FAN17G2665' => 'fan', 'FAN18G1456' => 'fan', 'FAN18G1525' => 'fan', 'FAN18G3500' => 'fan', 'FAN28G2670' => 'fan', 'FvH4_1g12391' => 'fve', 'FvH4_4g23220' => 'fve', 'FvH4_5g08810' => 'fve', 'FvH4_5g28960' => 'fve', 'FvH4_6g42820' => 'fve', 'FvH4_6g51110' => 'fve', 'Glyma.02G051802' => 'gma', 'Glyma.04G185300' => 'gma', 'Glyma.05G202900' => 'gma', 'Glyma.08G010300' => 'gma', 'Glyma.16G131900' => 'gma', 'Glyma.17G087900' => 'gma', 'Gohir.A07G048600' => 'ghi', 'Gohir.A11G179000' => 'ghi', 'Gohir.A12G140900' => 'ghi', 'Gohir.A12G140950' => 'ghi', 'Gohir.A12G191700' => 'ghi', 'Gohir.A13G086300' => 'ghi', 'Gohir.D07G052900' => 'ghi', 'Gohir.D11G186600' => 'ghi', 'Gohir.D12G145575' => 'ghi', 'Gohir.D12G145650' => 'ghi', 'Gohir.D12G145725' => 'ghi', 'Gohir.D12G194050' => 'ghi', 'Gohir.D13G091800' => 'ghi', 'Gorai.001G055900' => 'gra', 'Gorai.007G198400' => 'gra', 'Gorai.008G157000' => 'gra', 'Gorai.008G157100' => 'gra', 'Gorai.008G208700' => 'gra', 'Gorai.010G138700' => 'gra', 'GSVIVG01000977001' => 'vvi', 'GSVIVG01007708001' => 'vvi', 'GSVIVG01008587001' => 'vvi', 'GSVIVG01018849001' => 'vvi', 'GSVIVG01032432001' => 'vvi', 'HanXRQChr02g0034131' => 'han', 'HanXRQChr02g0035981' => 'han', 'HanXRQChr02g0035991' => 'han', 'HanXRQChr05g0155611' => 'han', 'HanXRQChr05g0155621' => 'han', 'HanXRQChr08g0236501' => 'han', 'HanXRQChr09g0261321' => 'han', 'HanXRQChr09g0272081' => 'han', 'HanXRQChr10g0310741' => 'han', 'HanXRQChr11g0325591' => 'han', 'HanXRQChr12g0385691' => 'han', 'HanXRQChr13g0387801' => 'han', 'HanXRQChr15g0463011' => 'han', 'Haze_03826' => 'cav', 'Haze_03827' => 'cav', 'Haze_07183' => 'cav', 'Haze_07537' => 'cav', 'Haze_07539' => 'cav', 'Haze_12461' => 'cav', 'Haze_16115' => 'cav', 'Haze_16808' => 'cav', 'Haze_18531' => 'cav', 'Hma1.2p1_0046F.1_g026700' => 'hma', 'Hma1.2p1_0046F.1_g026710' => 'hma', 'Hma1.2p1_0168F.1_g074340' => 'hma', 'Hma1.2p1_0266F.1_g107030' => 'hma', 'Hma1.2p1_0266F.1_g107060' => 'hma', 'Hma1.2p1_0275F.1_g110510' => 'hma', 'Hma1.2p1_0592F.1_g185490' => 'hma', 'Hma1.2p1_0592F.1_g185500' => 'hma', 'Hma1.2p1_0592F.1_g185510' => 'hma', 'Hma1.2p1_0592F.1_g185520' => 'hma', 'Hma1.2p1_0592F.1_g185530' => 'hma', 'Hma1.2p1_0818F.1_g223450' => 'hma', 'HPP92_009708' => 'vpl', 'HPP92_009793' => 'vpl', 'HPP92_009796' => 'vpl', 'HPP92_009797' => 'vpl', 'HPP92_014940' => 'vpl', 'HPP92_014988' => 'vpl', 'Hund02463' => 'sun', 'Hund02760' => 'sun', 'Hund05071' => 'sun', 'Hund10108' => 'sun', 'Hund11204' => 'sun', 'Hund14016' => 'sun', 'Hund16464' => 'sun', 'Lalb_Chr09g0333391' => 'lal', 'Lalb_Chr11g0070461' => 'lal', 'Lalb_Chr12g0201671' => 'lal', 'Lalb_Chr13g0297161' => 'lal', 'Lj1g0002823' => 'lja', 'Lj3C1074T6' => 'lonja', 'Lj4A212T28' => 'lonja', 'Lj4g0005516' => 'lja', 'Lj4g0013705' => 'lja', 'Lj4g0027865' => 'lja', 'Lj5C92G16' => 'lonja', 'Lj5C92T12' => 'lonja', 'Lj7C596T3' => 'lonja', 'Lj9A446G59' => 'lonja', 'Lj9A482G21' => 'lonja', 'Lsat_1_v5_gn_1_28261' => 'lsa', 'Lsat_1_v5_gn_1_28281' => 'lsa', 'Lsat_1_v5_gn_1_32721' => 'lsa', 'Lsat_1_v5_gn_4_151760' => 'lsa', 'Lsat_1_v5_gn_4_2120' => 'lsa', 'Lsat_1_v5_gn_4_75761' => 'lsa', 'Lsat_1_v5_gn_5_10920' => 'lsa', 'Manes.02G099900' => 'mes', 'Manes.11G096200' => 'mes', 'Manes.12G007200' => 'mes', 'Manes.14G048300' => 'mes', 'Manes.17G114700' => 'mes', 'Mapoly0002s0070' => 'mpo', 'Mapoly0029s0099' => 'mpo', 'MBI07_g24742_MAGBIO' => 'mbi', 'MBI10_g27988_MAGBIO' => 'mbi', 'MBI11_g13057_MAGBIO' => 'mbi', 'MD02G1137200' => 'mdo', 'MD06G1137200' => 'mdo', 'MD07G1122300' => 'mdo', 'MD09G1078200' => 'mdo', 'MD13G1123700' => 'mdo', 'MD14G1151900' => 'mdo', 'MD17G1030900' => 'mdo', 'MD17G1068200' => 'mdo', 'MD17G1068600' => 'mdo', 'Medtr3g077540' => 'mtr', 'Medtr4g105530' => 'mtr', 'Medtr8g076580' => 'mtr', 'Medtr8g076590' => 'mtr', 'Medtr8g096410' => 'mtr', 'MELO3C016411.2' => 'cme', 'MELO3C017780.2' => 'cme', 'MELO3C022560.2' => 'cme', 'MELO3C026187.2' => 'cme', 'MELO3C026286.2' => 'cme', 'MELO3C032854.2' => 'cme', 'Migut.H02495' => 'egut', 'Migut.I00561' => 'egut', 'Migut.K01015' => 'egut', 'Migut.K01016' => 'egut', 'Migut.L00743' => 'egut', 'Migut.L00744' => 'egut', 'Migut.L00746' => 'egut', 'Migut.L00798' => 'egut', 'Migut.L00799' => 'egut', 'Migut.N02096' => 'egut', 'MSTRG.11259' => 'ama', 'MSTRG.23142' => 'ama', 'MSTRG.2499' => 'ama', 'Nitab4.5_0000003g0730' => 'nta', 'Nitab4.5_0000137g0020' => 'nta', 'Nitab4.5_0000721g0210' => 'nta', 'Nitab4.5_0000723g0050' => 'nta', 'Nitab4.5_0000913g0070' => 'nta', 'Nitab4.5_0001332g0040' => 'nta', 'Nitab4.5_0001771g0050' => 'nta', 'Nitab4.5_0001918g0050' => 'nta', 'Nitab4.5_0002686g0030' => 'nta', 'Nitab4.5_0003156g0020' => 'nta', 'Nitab4.5_0003383g0040' => 'nta', 'Nitab4.5_0003918g0010' => 'nta', 'Nitab4.5_0006760g0010' => 'nta', 'Nn1g05981' => 'nnu', 'Nn1g06288' => 'nnu', 'Nn3g16371' => 'nnu', 'Nn3g16786' => 'nnu', 'Nn4g22232' => 'nnu', 'Oeu005144.1' => 'oeu', 'Oeu005145.1' => 'oeu', 'Oeu011348.1' => 'oeu', 'Oeu016415.1' => 'oeu', 'Oeu023501.1' => 'oeu', 'Oeu044473.1' => 'oeu', 'Oeu048892.2' => 'oeu', 'Os01g0549200' => 'osa', 'Os02g0469300' => 'osa', 'Os04g0311100' => 'osa', 'Os06g0474900' => 'osa', 'Os10g0181700' => 'osa', 'Os11g0454800' => 'osa', 'Peaxi162Scf00037g00714' => 'pax', 'Peaxi162Scf00084g01217' => 'pax', 'Peaxi162Scf00257g00217' => 'pax', 'Peaxi162Scf00516g00215' => 'pax', 'Peaxi162Scf00689g00123' => 'pax', 'PGR044G2719' => 'pgr', 'PGR083G1360' => 'pgr', 'PGR102G2849' => 'pgr', 'PGR119G2534' => 'pgr', 'PGSC0003DMG400003538' => 'stu', 'PGSC0003DMG400028138' => 'stu', 'PGSC0003DMG400031732' => 'stu', 'PGSC0003DMG400038165' => 'stu', 'Phvul.002G284600' => 'pvu', 'Phvul.003G258200' => 'pvu', 'Phvul.009G176500' => 'pvu', 'Potri.003G167201' => 'ptr', 'Potri.005G118400' => 'ptr', 'Potri.012G089000' => 'ptr', 'Potri.012G102800' => 'ptr', 'Potri.015G079400' => 'ptr', 'Potri.015G100900' => 'ptr', 'Pp3c14_9810' => 'ppa', 'Pp3c15_10450' => 'ppa', 'Pp3c20_19150' => 'ppa', 'Pp3c23_12740' => 'ppa', 'Pp3c23_6310' => 'ppa', 'Pp3c24_3720' => 'ppa', 'Pp3c27_2580' => 'ppa', 'Pp3c9_8990' => 'ppa', 'PRCOL_00002854' => 'pco', 'Prupe.1G221200' => 'ppe', 'Prupe.3G289000' => 'ppe', 'Prupe.5G147000' => 'ppe', 'Prupe.6G157300' => 'ppe', 'Prupe.7G163400' => 'ppe', 'Psat0s2177g0040' => 'psa', 'Psat3g174760' => 'psa', 'Psat3g192160' => 'psa', 'Psat4g058520' => 'psa', 'Psat4g096840' => 'psa', 'Psat7g037320' => 'psa', 'PSO017G1274' => 'pso', 'PSO017G5166' => 'pso', 'PSO063G4558' => 'pso', 'PSO170G4458' => 'pso', 'PSO170G5005' => 'pso', 'PSO210G6156' => 'pso', 'PSO210G6635' => 'pso', 'PSO210G7397' => 'pso', 'PSO210G7700' => 'pso', 'PSO455G0035' => 'pso', 'PSO455G0180' => 'pso', 'PSO478G4515' => 'pso', 'PSO832G1305' => 'pso', 'PSO832G3489' => 'pso', 'QL02p075247' => 'qlo', 'QL03p051148' => 'qlo', 'QL05p010313' => 'qlo', 'QL06p034627' => 'qlo', 'QL10p001889' => 'qlo', 'QL10p010846' => 'qlo', 'RcHm_v2.0_Chr1g0350621' => 'rch', 'RcHm_v2.0_Chr1g0350641' => 'rch', 'RcHm_v2.0_Chr2g0092891' => 'rch', 'RcHm_v2.0_Chr2g0100251' => 'rch', 'RcHm_v2.0_Chr2g0158661' => 'rch', 'RcHm_v2.0_Chr2g0172741' => 'rch', 'RcHm_v2.0_Chr4g0429571' => 'rch', 'RcHm_v2.0_Chr5g0042471' => 'rch', 'RcHm_v2.0_Chr7g0189451' => 'rch', 'Rhsim08G0052000' => 'rsi', 'Rhsim08G0174400' => 'rsi', 'Rhsim08G0193200' => 'rsi', 'Rhsim10G0214800' => 'rsi', 'Rhsim10G0214900' => 'rsi', 'Rhsim10G0215000' => 'rsi', 'Rhsim12G0022900' => 'rsi', 'Rhsim12G0177500' => 'rsi', 'Rhsim12G0177700' => 'rsi', 'Sabra03G0122600' => 'sbr', 'Sabra05G0097400' => 'sbr', 'Sabra12G0064100' => 'sbr', 'Sabra15G0121300' => 'sbr', 'SalBow2G0642' => 'sbo', 'SalBow5G2667' => 'sbo', 'SalBow5G4873' => 'sbo', 'SalBow8G2395' => 'sbo', 'Sc03g0003290' => 'sci', 'Sc10g0010130' => 'sci', 'Sc22g0003650' => 'sci', 'Sed0001603' => 'sed', 'Sed0004259' => 'sed', 'Sed0006789' => 'sed', 'Sed0011838' => 'sed', 'Sed0012964' => 'sed', 'Sed0016383' => 'sed', 'Sed0019010' => 'sed', 'Sed0020188' => 'sed', 'SEGI_04702' => 'sgi', 'SEGI_17231' => 'sgi', 'SEGI_18877' => 'sgi', 'SEGI_25196' => 'sgi', 'SEGI_25515' => 'sgi', 'SEGI_28445' => 'sgi', 'SEGI_37452' => 'sgi', 'SGA_v2.0_scaffold188G40336' => 'sas', 'SGA_v2.0_scaffold228G43247' => 'sas', 'SGA_v2.0_scaffold280G46853' => 'sas', 'SGA_v2.0_scaffold34G13808' => 'sas', 'SGA_v2.0_scaffold40G15576' => 'sas', 'SGA_v2.0_scaffold611G53188' => 'sas', 'SGA_v2.0_scaffold78G25461' => 'sas', 'SGA_v2.0_scaffold90G27888' => 'sas', 'SHI08601' => 'shi', 'SHI08606' => 'shi', 'SHI17117' => 'shi', 'SHI17119' => 'shi', 'SMO118G0201' => 'smo', 'SMO169G0247' => 'smo', 'SMO176G0006' => 'smo', 'SMO176G0015' => 'smo', 'SMO202G0006' => 'smo', 'SMO240G0050' => 'smo', 'SMO286G0009' => 'smo', 'SMO338G0033' => 'smo', 'SMO356G0533' => 'smo', 'SMO364G0382' => 'smo', 'SMO367G0166' => 'smo', 'SMO367G1098' => 'smo', 'Solyc01g009920.3' => 'sly', 'Solyc01g099300.3' => 'sly', 'Solyc02g084700.3' => 'sly', 'Solyc03g097520.3' => 'sly', 'Solyc06g071580.3' => 'sly', 'Solyc10g081760.3' => 'sly', 'Sopen01g005480' => 'spe', 'Sopen01g042850' => 'spe', 'Sopen02g029370' => 'spe', 'Sopen03g028280' => 'spe', 'Sopen06g027870' => 'spe', 'Sopen10g032270' => 'spe', 'Sp5g18180' => 'spa', 'Sp6g12880' => 'spa', 'Sp6g30850' => 'spa', 'Sp7g22960' => 'spa', 'Sp7g34010' => 'spa', 'SpUn1326_0010' => 'spa', 'TAR371G0242' => 'tar', 'TAR622G0638' => 'tar', 'TAR628G1548' => 'tar', 'TAR629G1079' => 'tar', 'TAR629G3413' => 'tar', 'THA.LOC104804249' => 'tha', 'THA.LOC104808315' => 'tha', 'THA.LOC104809238' => 'tha', 'THA.LOC104825484' => 'tha', 'Thecc.01G025500' => 'tca', 'Thecc.03G015800' => 'tca', 'Thecc.03G018000' => 'tca', 'Thecc.03G134800' => 'tca', 'Thecc.04G014700' => 'tca', 'Thhalv10006991m.g' => 'esa', 'Thhalv10012707m.g' => 'esa', 'Thhalv10015739m.g' => 'esa', 'Thhalv10024553m.g' => 'esa', 'Thhalv10024673m.g' => 'esa', 'Thhalv10029187m.g' => 'esa', 'TPR.G12971' => 'tpr', 'TPR.G29396' => 'tpr', 'TPR.G33376' => 'tpr', 'TPR.G35508' => 'tpr', 'TPR.G35516' => 'tpr', 'TPR.G37317' => 'tpr', 'TPR.G37389' => 'tpr', 'TPR.G37523' => 'tpr', 'TPR.G559' => 'tpr', 'TWI14G0070' => 'twi', 'TWI14G0729' => 'twi', 'TWI18G0596' => 'twi', 'TWI39G0780' => 'twi', 'TWI39G0850' => 'twi', 'TWI73G1052' => 'twi', 'unitig_52.g17485' => 'ugi', 'unitig_61.g26355' => 'ugi', 'vmacro01040' => 'vma', 'vmacro16731' => 'vma', 'vmacro18270' => 'vma', 'vmacro19142' => 'vma', 'vmacro19407' => 'vma', 'vmacro19408' => 'vma', 'vmacro21899' => 'vma', 'vmacro21900' => 'vma', 'vmacro21901' => 'vma', 'VMungo0251G0490' => 'vmu', 'VMungo0251G1748' => 'vmu', 'VMungo1309G0421' => 'vmu', 'Zm00001eb086500' => 'zma', 'Zm00001eb150680' => 'zma', 'Zm00001eb162330' => 'zma', 'Zm00001eb203130' => 'zma', 'Zm00001eb369480' => 'zma', 'Zm00001eb382340' => 'zma', 'Zm00001eb416360' => 'zma' ), 'gf_id' => 'HOM05D000902', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000902' ), 'data_identifier' => 'HOM05D000902', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000902', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '663', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02470' => 'bna', 'A01p16260' => 'bna', 'A02p01680' => 'bna', 'A03p16600' => 'bna', 'A03p55660' => 'bna', 'A03p64160' => 'bna', 'A03p64170' => 'bna', 'A08p31900' => 'bna', 'A09p59530' => 'bna', 'A10p08230' => 'bna', 'A10p25090' => 'bna', 'Aa31LG3G7100' => 'aar', 'Aa31LG3G7110' => 'aar', 'Aa31LG6G13160' => 'aar', 'Aa31LG7G10770' => 'aar', 'Aa31LG7G3830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2723' => 'aag', 'Actinidia08045' => 'ach', 'Actinidia08888' => 'ach', 'Actinidia18333' => 'ach', 'Actinidia19334' => 'ach', 'Actinidia25552' => 'ach', 'Actinidia26089' => 'ach', 'Actinidia30615' => 'ach', 'Actinidia30616' => 'ach', 'Actinidia33083' => 'ach', 'Actinidia35762' => 'ach', 'Ah.02g110620' => 'amhyb', 'Ah.11g046390' => 'amhyb', 'AL1G31670' => 'aly', 'AL6G23730' => 'aly', 'AL7G14740' => 'aly', 'AL7G14750' => 'aly', 'AL7G14760' => 'aly', 'AL7G28220' => 'aly', 'AL8G24940' => 'aly', 'Aqoxy3G01665' => 'aox', 'Aqoxy3G02853' => 'aox', 'Aqoxy5G01513' => 'aox', 'Aqoxy5G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8SKA4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ75LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKDA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0LJZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7REX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZP4YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWX7I5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2QKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS0L9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPCD8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q161UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC7XCF' => 'arhy', 'AT1G19100' => 'ath', 'AT4G24970' => 'ath', 'AT4G36270' => 'ath', 'AT4G36280' => 'ath', 'AT4G36290' => 'ath', 'AT5G13130' => 'ath', 'AT5G50780' => 'ath', 'ATR0582G266' => 'atr', 'ATR0661G195' => 'atr', 'ATR1152G031' => 'atr', 'Atru.chr11.2382' => 'acertr', 'Atru.chr12.2337' => 'acertr', 'Atru.chr3.744' => 'acertr', 'Atru.chr6.1870' => 'acertr', 'Atru.chr9.2515' => 'acertr', 'AUR62004120' => 'cqu', 'AUR62005667' => 'cqu', 'AUR62007634' => 'cqu', 'AUR62008186' => 'cqu', 'AUR62008187' => 'cqu', 'AUR62008188' => 'cqu', 'AUR62027954' => 'cqu', 'AUR62028766' => 'cqu', 'AUR62028767' => 'cqu', 'AUR62028768' => 'cqu', 'AUR62028886' => 'cqu', 'AUR62029563' => 'cqu', 'AUR62038832' => 'cqu', 'BcaB01g04149' => 'bca', 'BcaB03g12940' => 'bca', 'BcaB03g13090' => 'bca', 'BcaB03g14466' => 'bca', 'BcaB05g24035' => 'bca', 'BcaC01g06050' => 'bca', 'BcaC04g19148' => 'bca', 'BcaC04g20761' => 'bca', 'BcaC06g32845' => 'bca', 'BcaC07g41274' => 'bca', 'BcaC09g50827' => 'bca', 'BcaNung00741' => 'bca', 'BcaNung00742' => 'bca', 'BcaNung01859' => 'bca', 'BcaNung03985' => 'bca', 'BcaNung03989' => 'bca', 'BcaNung05661' => 'bca', 'BolC1t00257H' => 'bol', 'BolC1t01956H' => 'bol', 'BolC2t06534H' => 'bol', 'BolC3t14334H' => 'bol', 'BolC5t30451H' => 'bol', 'BolC7t45880H' => 'bol', 'BolC7t46586H' => 'bol', 'BolC8t49301H' => 'bol', 'BolC8t51837H' => 'bol', 'BolC9t56822H' => 'bol', 'BolC9t59235H' => 'bol', 'BraA01t00234Z' => 'bra', 'BraA01t01563Z' => 'bra', 'BraA02t05147Z' => 'bra', 'BraA03t10947Z' => 'bra', 'BraA03t14633Z' => 'bra', 'BraA08t35112Z' => 'bra', 'BraA09t41330Z' => 'bra', 'BraA10t44570Z' => 'bra', 'C01p02670' => 'bna', 'C01p20260' => 'bna', 'C02p05890' => 'bna', 'C03p19530' => 'bna', 'C05p17470' => 'bna', 'C07p53900' => 'bna', 'C07p61630' => 'bna', 'C08p16800' => 'bna', 'C08p42810' => 'bna', 'C09p39480' => 'bna', 'C09p63980' => 'bna', 'CAN.G1001.7' => 'can', 'CAN.G1034.55' => 'can', 'CAN.G143.7' => 'can', 'CAN.G3340.1' => 'can', 'CAN.G358.19' => 'can', 'CAN.G373.2' => 'can', 'CAN.G674.16' => 'can', 'CAN.G674.17' => 'can', 'CAN.G674.18' => 'can', 'CAN.G732.2' => 'can', 'CAN.G732.3' => 'can', 'CAN.G993.39' => 'can', 'CANSAT01G2052' => 'cansat', 'CANSAT80G0070' => 'cansat', 'CANSAT80G0483' => 'cansat', 'CANSAT80G0625' => 'cansat', 'CARHR019690' => 'chi', 'CARHR080280' => 'chi', 'CARHR152750' => 'chi', 'CARHR152760' => 'chi', 'CARHR152770' => 'chi', 'CARHR200340' => 'chi', 'CARHR232370' => 'chi', 'CARHR244670' => 'chi', 'CARHR244680' => 'chi', 'CARHR257520' => 'chi', 'Carub.0001s1872' => 'cru', 'Carub.0006s1130' => 'cru', 'Carub.0007s0396' => 'cru', 'Carub.0007s0397' => 'cru', 'Carub.0007s1608' => 'cru', 'Carub.0008s1068' => 'cru', 'Carub.0008s1077' => 'cru', 'Ca_16158_v3' => 'car', 'Ca_17571_v3' => 'car', 'Ca_21936_v3' => 'car', 'Ca_22350_v3' => 'car', 'CBR_g22445' => 'cbr', 'CBR_g26290' => 'cbr', 'Cc04_g09610' => 'ccan', 'Cc04_g12280' => 'ccan', 'Cc07_g10230' => 'ccan', 'CDE02G0093' => 'cde', 'CDE02G0701' => 'cde', 'CDE04G1050' => 'cde', 'CDE05G1833' => 'cde', 'CDE05G3058' => 'cde', 'CDE05G3380' => 'cde', 'CDE06G0536' => 'cde', 'Cfa006923' => 'cfa', 'Cfa009402' => 'cfa', 'Cfa018751' => 'cfa', 'Cfa019164' => 'cfa', 'Cfa022935' => 'cfa', 'Ciclev10019081m.g' => 'ccl', 'Ciclev10025076m.g' => 'ccl', 'Ciclev10030712m.g' => 'ccl', 'Ciclev10033760m.g' => 'ccl', 'CiPaw.05G105600' => 'cil', 'CiPaw.08G136700' => 'cil', 'CiPaw.11G003900' => 'cil', 'CiPaw.11G023700' => 'cil', 'CiPaw.12G003700' => 'cil', 'ClCG06G017100' => 'cla', 'ClCG06G018110' => 'cla', 'ClCG07G008800' => 'cla', 'ClCG07G015330' => 'cla', 'COL.COLO4_13698' => 'col', 'COL.COLO4_16659' => 'col', 'COL.COLO4_21986' => 'col', 'COL.COLO4_24049' => 'col', 'COL.COLO4_29061' => 'col', 'COL.COLO4_29075' => 'col', 'COL.COLO4_30094' => 'col', 'Cpa.g.c33689' => 'cpa', 'Cpa.g.sc108.39' => 'cpa', 'Cpa.g.sc108.41' => 'cpa', 'Cpa.g.sc1163.1' => 'cpa', 'Cpa.g.sc4.155' => 'cpa', 'Cpa.g.sc6.194' => 'cpa', 'CsaV3_1G000340' => 'csa', 'CsaV3_1G001400' => 'csa', 'CsaV3_4G002220' => 'csa', 'CsaV3_4G005370' => 'csa', 'CSS0007487' => 'camsi', 'CSS0008066' => 'camsi', 'CSS0009120' => 'camsi', 'CSS0015512' => 'camsi', 'CSS0022409' => 'camsi', 'CSS0025358' => 'camsi', 'CSS0044547' => 'camsi', 'DCAR_013057' => 'dca', 'DCAR_015058' => 'dca', 'DCAR_016027' => 'dca', 'DCAR_017327' => 'dca', 'DCAR_020743' => 'dca', 'DCAR_026157' => 'dca', 'DCAR_032339' => 'dca', 'DCAR_032340' => 'dca', 'Dinv11200' => 'din', 'Dinv11201' => 'din', 'Dinv20631' => 'din', 'Dinv23182' => 'din', 'Dinv33466' => 'din', 'Dinv33583' => 'din', 'Dinv38565' => 'din', 'Duzib068G0200' => 'dzi', 'Duzib147G0132' => 'dzi', 'Duzib147G0635' => 'dzi', 'Duzib205G1670' => 'dzi', 'Duzib251G0606' => 'dzi', 'ECA232G3336' => 'eca', 'ECA232G3763' => 'eca', 'ECA232G4845' => 'eca', 'ECA234G1607' => 'eca', 'ECA246G0932' => 'eca', 'ECA247G0781' => 'eca', 'ECA247G1932' => 'eca', 'ECA247G2079' => 'eca', 'ECA247G3338' => 'eca', 'ECA247G4115' => 'eca', 'EL10Ac3g06552' => 'bvu', 'EL10Ac5g10721' => 'bvu', 'EL10Ac5g10722' => 'bvu', 'EL10Ac5g10723' => 'bvu', 'EL10Ac5g11361' => 'bvu', 'EL10Ac6g13553' => 'bvu', 'EL10As8g23872' => 'bvu', 'Eucgr.B00250' => 'egr', 'Eucgr.B00251' => 'egr', 'Eucgr.B03533' => 'egr', 'Eucgr.I02381' => 'egr', 'Eucgr.K02700' => 'egr', 'FAN02G0174' => 'fan', 'FAN02G3146' => 'fan', 'FAN04G1672' => 'fan', 'FAN04G2273' => 'fan', 'FAN05G2791' => 'fan', 'FAN05G4035' => 'fan', 'FAN07G0834' => 'fan', 'FAN08G1198' => 'fan', 'FAN09G4182' => 'fan', 'FAN12G0496' => 'fan', 'FAN13G1027' => 'fan', 'FAN13G2951' => 'fan', 'FAN14G0705' => 'fan', 'FAN14G0720' => 'fan', 'FAN17G0201' => 'fan', 'FAN17G2665' => 'fan', 'FAN18G1456' => 'fan', 'FAN18G1525' => 'fan', 'FAN18G3500' => 'fan', 'FAN28G2670' => 'fan', 'FvH4_1g12391' => 'fve', 'FvH4_4g23220' => 'fve', 'FvH4_5g08810' => 'fve', 'FvH4_5g28960' => 'fve', 'FvH4_6g42820' => 'fve', 'FvH4_6g51110' => 'fve', 'Glyma.02G051802' => 'gma', 'Glyma.04G185300' => 'gma', 'Glyma.05G202900' => 'gma', 'Glyma.08G010300' => 'gma', 'Glyma.16G131900' => 'gma', 'Glyma.17G087900' => 'gma', 'Gohir.A07G048600' => 'ghi', 'Gohir.A11G179000' => 'ghi', 'Gohir.A12G140900' => 'ghi', 'Gohir.A12G140950' => 'ghi', 'Gohir.A12G191700' => 'ghi', 'Gohir.A13G086300' => 'ghi', 'Gohir.D07G052900' => 'ghi', 'Gohir.D11G186600' => 'ghi', 'Gohir.D12G145575' => 'ghi', 'Gohir.D12G145650' => 'ghi', 'Gohir.D12G145725' => 'ghi', 'Gohir.D12G194050' => 'ghi', 'Gohir.D13G091800' => 'ghi', 'Gorai.001G055900' => 'gra', 'Gorai.007G198400' => 'gra', 'Gorai.008G157000' => 'gra', 'Gorai.008G157100' => 'gra', 'Gorai.008G208700' => 'gra', 'Gorai.010G138700' => 'gra', 'GSVIVG01000977001' => 'vvi', 'GSVIVG01007708001' => 'vvi', 'GSVIVG01008587001' => 'vvi', 'GSVIVG01018849001' => 'vvi', 'GSVIVG01032432001' => 'vvi', 'HanXRQChr02g0034131' => 'han', 'HanXRQChr02g0035981' => 'han', 'HanXRQChr02g0035991' => 'han', 'HanXRQChr05g0155611' => 'han', 'HanXRQChr05g0155621' => 'han', 'HanXRQChr08g0236501' => 'han', 'HanXRQChr09g0261321' => 'han', 'HanXRQChr09g0272081' => 'han', 'HanXRQChr10g0310741' => 'han', 'HanXRQChr11g0325591' => 'han', 'HanXRQChr12g0385691' => 'han', 'HanXRQChr13g0387801' => 'han', 'HanXRQChr15g0463011' => 'han', 'Haze_03826' => 'cav', 'Haze_03827' => 'cav', 'Haze_07183' => 'cav', 'Haze_07537' => 'cav', 'Haze_07539' => 'cav', 'Haze_12461' => 'cav', 'Haze_16115' => 'cav', 'Haze_16808' => 'cav', 'Haze_18531' => 'cav', 'Hma1.2p1_0046F.1_g026700' => 'hma', 'Hma1.2p1_0046F.1_g026710' => 'hma', 'Hma1.2p1_0168F.1_g074340' => 'hma', 'Hma1.2p1_0266F.1_g107030' => 'hma', 'Hma1.2p1_0266F.1_g107060' => 'hma', 'Hma1.2p1_0275F.1_g110510' => 'hma', 'Hma1.2p1_0592F.1_g185490' => 'hma', 'Hma1.2p1_0592F.1_g185500' => 'hma', 'Hma1.2p1_0592F.1_g185510' => 'hma', 'Hma1.2p1_0592F.1_g185520' => 'hma', 'Hma1.2p1_0592F.1_g185530' => 'hma', 'Hma1.2p1_0818F.1_g223450' => 'hma', 'HPP92_009708' => 'vpl', 'HPP92_009793' => 'vpl', 'HPP92_009796' => 'vpl', 'HPP92_009797' => 'vpl', 'HPP92_014940' => 'vpl', 'HPP92_014988' => 'vpl', 'Hund02463' => 'sun', 'Hund02760' => 'sun', 'Hund05071' => 'sun', 'Hund10108' => 'sun', 'Hund11204' => 'sun', 'Hund14016' => 'sun', 'Hund16464' => 'sun', 'Lalb_Chr09g0333391' => 'lal', 'Lalb_Chr11g0070461' => 'lal', 'Lalb_Chr12g0201671' => 'lal', 'Lalb_Chr13g0297161' => 'lal', 'Lj1g0002823' => 'lja', 'Lj3C1074T6' => 'lonja', 'Lj4A212T28' => 'lonja', 'Lj4g0005516' => 'lja', 'Lj4g0013705' => 'lja', 'Lj4g0027865' => 'lja', 'Lj5C92G16' => 'lonja', 'Lj5C92T12' => 'lonja', 'Lj7C596T3' => 'lonja', 'Lj9A446G59' => 'lonja', 'Lj9A482G21' => 'lonja', 'Lsat_1_v5_gn_1_28261' => 'lsa', 'Lsat_1_v5_gn_1_28281' => 'lsa', 'Lsat_1_v5_gn_1_32721' => 'lsa', 'Lsat_1_v5_gn_4_151760' => 'lsa', 'Lsat_1_v5_gn_4_2120' => 'lsa', 'Lsat_1_v5_gn_4_75761' => 'lsa', 'Lsat_1_v5_gn_5_10920' => 'lsa', 'Manes.02G099900' => 'mes', 'Manes.11G096200' => 'mes', 'Manes.12G007200' => 'mes', 'Manes.14G048300' => 'mes', 'Manes.17G114700' => 'mes', 'Mapoly0002s0070' => 'mpo', 'Mapoly0029s0099' => 'mpo', 'MBI07_g24742_MAGBIO' => 'mbi', 'MBI10_g27988_MAGBIO' => 'mbi', 'MBI11_g13057_MAGBIO' => 'mbi', 'MD02G1137200' => 'mdo', 'MD06G1137200' => 'mdo', 'MD07G1122300' => 'mdo', 'MD09G1078200' => 'mdo', 'MD13G1123700' => 'mdo', 'MD14G1151900' => 'mdo', 'MD17G1030900' => 'mdo', 'MD17G1068200' => 'mdo', 'MD17G1068600' => 'mdo', 'Medtr3g077540' => 'mtr', 'Medtr4g105530' => 'mtr', 'Medtr8g076580' => 'mtr', 'Medtr8g076590' => 'mtr', 'Medtr8g096410' => 'mtr', 'MELO3C016411.2' => 'cme', 'MELO3C017780.2' => 'cme', 'MELO3C022560.2' => 'cme', 'MELO3C026187.2' => 'cme', 'MELO3C026286.2' => 'cme', 'MELO3C032854.2' => 'cme', 'Migut.H02495' => 'egut', 'Migut.I00561' => 'egut', 'Migut.K01015' => 'egut', 'Migut.K01016' => 'egut', 'Migut.L00743' => 'egut', 'Migut.L00744' => 'egut', 'Migut.L00746' => 'egut', 'Migut.L00798' => 'egut', 'Migut.L00799' => 'egut', 'Migut.N02096' => 'egut', 'MSTRG.11259' => 'ama', 'MSTRG.23142' => 'ama', 'MSTRG.2499' => 'ama', 'Nitab4.5_0000003g0730' => 'nta', 'Nitab4.5_0000137g0020' => 'nta', 'Nitab4.5_0000721g0210' => 'nta', 'Nitab4.5_0000723g0050' => 'nta', 'Nitab4.5_0000913g0070' => 'nta', 'Nitab4.5_0001332g0040' => 'nta', 'Nitab4.5_0001771g0050' => 'nta', 'Nitab4.5_0001918g0050' => 'nta', 'Nitab4.5_0002686g0030' => 'nta', 'Nitab4.5_0003156g0020' => 'nta', 'Nitab4.5_0003383g0040' => 'nta', 'Nitab4.5_0003918g0010' => 'nta', 'Nitab4.5_0006760g0010' => 'nta', 'Nn1g05981' => 'nnu', 'Nn1g06288' => 'nnu', 'Nn3g16371' => 'nnu', 'Nn3g16786' => 'nnu', 'Nn4g22232' => 'nnu', 'Oeu005144.1' => 'oeu', 'Oeu005145.1' => 'oeu', 'Oeu011348.1' => 'oeu', 'Oeu016415.1' => 'oeu', 'Oeu023501.1' => 'oeu', 'Oeu044473.1' => 'oeu', 'Oeu048892.2' => 'oeu', 'Os01g0549200' => 'osa', 'Os02g0469300' => 'osa', 'Os04g0311100' => 'osa', 'Os06g0474900' => 'osa', 'Os10g0181700' => 'osa', 'Os11g0454800' => 'osa', 'Peaxi162Scf00037g00714' => 'pax', 'Peaxi162Scf00084g01217' => 'pax', 'Peaxi162Scf00257g00217' => 'pax', 'Peaxi162Scf00516g00215' => 'pax', 'Peaxi162Scf00689g00123' => 'pax', 'PGR044G2719' => 'pgr', 'PGR083G1360' => 'pgr', 'PGR102G2849' => 'pgr', 'PGR119G2534' => 'pgr', 'PGSC0003DMG400003538' => 'stu', 'PGSC0003DMG400028138' => 'stu', 'PGSC0003DMG400031732' => 'stu', 'PGSC0003DMG400038165' => 'stu', 'Phvul.002G284600' => 'pvu', 'Phvul.003G258200' => 'pvu', 'Phvul.009G176500' => 'pvu', 'Potri.003G167201' => 'ptr', 'Potri.005G118400' => 'ptr', 'Potri.012G089000' => 'ptr', 'Potri.012G102800' => 'ptr', 'Potri.015G079400' => 'ptr', 'Potri.015G100900' => 'ptr', 'Pp3c14_9810' => 'ppa', 'Pp3c15_10450' => 'ppa', 'Pp3c20_19150' => 'ppa', 'Pp3c23_12740' => 'ppa', 'Pp3c23_6310' => 'ppa', 'Pp3c24_3720' => 'ppa', 'Pp3c27_2580' => 'ppa', 'Pp3c9_8990' => 'ppa', 'PRCOL_00002854' => 'pco', 'Prupe.1G221200' => 'ppe', 'Prupe.3G289000' => 'ppe', 'Prupe.5G147000' => 'ppe', 'Prupe.6G157300' => 'ppe', 'Prupe.7G163400' => 'ppe', 'Psat0s2177g0040' => 'psa', 'Psat3g174760' => 'psa', 'Psat3g192160' => 'psa', 'Psat4g058520' => 'psa', 'Psat4g096840' => 'psa', 'Psat7g037320' => 'psa', 'PSO017G1274' => 'pso', 'PSO017G5166' => 'pso', 'PSO063G4558' => 'pso', 'PSO170G4458' => 'pso', 'PSO170G5005' => 'pso', 'PSO210G6156' => 'pso', 'PSO210G6635' => 'pso', 'PSO210G7397' => 'pso', 'PSO210G7700' => 'pso', 'PSO455G0035' => 'pso', 'PSO455G0180' => 'pso', 'PSO478G4515' => 'pso', 'PSO832G1305' => 'pso', 'PSO832G3489' => 'pso', 'QL02p075247' => 'qlo', 'QL03p051148' => 'qlo', 'QL05p010313' => 'qlo', 'QL06p034627' => 'qlo', 'QL10p001889' => 'qlo', 'QL10p010846' => 'qlo', 'RcHm_v2.0_Chr1g0350621' => 'rch', 'RcHm_v2.0_Chr1g0350641' => 'rch', 'RcHm_v2.0_Chr2g0092891' => 'rch', 'RcHm_v2.0_Chr2g0100251' => 'rch', 'RcHm_v2.0_Chr2g0158661' => 'rch', 'RcHm_v2.0_Chr2g0172741' => 'rch', 'RcHm_v2.0_Chr4g0429571' => 'rch', 'RcHm_v2.0_Chr5g0042471' => 'rch', 'RcHm_v2.0_Chr7g0189451' => 'rch', 'Rhsim08G0052000' => 'rsi', 'Rhsim08G0174400' => 'rsi', 'Rhsim08G0193200' => 'rsi', 'Rhsim10G0214800' => 'rsi', 'Rhsim10G0214900' => 'rsi', 'Rhsim10G0215000' => 'rsi', 'Rhsim12G0022900' => 'rsi', 'Rhsim12G0177500' => 'rsi', 'Rhsim12G0177700' => 'rsi', 'Sabra03G0122600' => 'sbr', 'Sabra05G0097400' => 'sbr', 'Sabra12G0064100' => 'sbr', 'Sabra15G0121300' => 'sbr', 'SalBow2G0642' => 'sbo', 'SalBow5G2667' => 'sbo', 'SalBow5G4873' => 'sbo', 'SalBow8G2395' => 'sbo', 'Sc03g0003290' => 'sci', 'Sc10g0010130' => 'sci', 'Sc22g0003650' => 'sci', 'Sed0001603' => 'sed', 'Sed0004259' => 'sed', 'Sed0006789' => 'sed', 'Sed0011838' => 'sed', 'Sed0012964' => 'sed', 'Sed0016383' => 'sed', 'Sed0019010' => 'sed', 'Sed0020188' => 'sed', 'SEGI_04702' => 'sgi', 'SEGI_17231' => 'sgi', 'SEGI_18877' => 'sgi', 'SEGI_25196' => 'sgi', 'SEGI_25515' => 'sgi', 'SEGI_28445' => 'sgi', 'SEGI_37452' => 'sgi', 'SGA_v2.0_scaffold188G40336' => 'sas', 'SGA_v2.0_scaffold228G43247' => 'sas', 'SGA_v2.0_scaffold280G46853' => 'sas', 'SGA_v2.0_scaffold34G13808' => 'sas', 'SGA_v2.0_scaffold40G15576' => 'sas', 'SGA_v2.0_scaffold611G53188' => 'sas', 'SGA_v2.0_scaffold78G25461' => 'sas', 'SGA_v2.0_scaffold90G27888' => 'sas', 'SHI08601' => 'shi', 'SHI08606' => 'shi', 'SHI17117' => 'shi', 'SHI17119' => 'shi', 'SMO118G0201' => 'smo', 'SMO169G0247' => 'smo', 'SMO176G0006' => 'smo', 'SMO176G0015' => 'smo', 'SMO202G0006' => 'smo', 'SMO240G0050' => 'smo', 'SMO286G0009' => 'smo', 'SMO338G0033' => 'smo', 'SMO356G0533' => 'smo', 'SMO364G0382' => 'smo', 'SMO367G0166' => 'smo', 'SMO367G1098' => 'smo', 'Solyc01g009920.3' => 'sly', 'Solyc01g099300.3' => 'sly', 'Solyc02g084700.3' => 'sly', 'Solyc03g097520.3' => 'sly', 'Solyc06g071580.3' => 'sly', 'Solyc10g081760.3' => 'sly', 'Sopen01g005480' => 'spe', 'Sopen01g042850' => 'spe', 'Sopen02g029370' => 'spe', 'Sopen03g028280' => 'spe', 'Sopen06g027870' => 'spe', 'Sopen10g032270' => 'spe', 'Sp5g18180' => 'spa', 'Sp6g12880' => 'spa', 'Sp6g30850' => 'spa', 'Sp7g22960' => 'spa', 'Sp7g34010' => 'spa', 'SpUn1326_0010' => 'spa', 'TAR371G0242' => 'tar', 'TAR622G0638' => 'tar', 'TAR628G1548' => 'tar', 'TAR629G1079' => 'tar', 'TAR629G3413' => 'tar', 'THA.LOC104804249' => 'tha', 'THA.LOC104808315' => 'tha', 'THA.LOC104809238' => 'tha', 'THA.LOC104825484' => 'tha', 'Thecc.01G025500' => 'tca', 'Thecc.03G015800' => 'tca', 'Thecc.03G018000' => 'tca', 'Thecc.03G134800' => 'tca', 'Thecc.04G014700' => 'tca', 'Thhalv10006991m.g' => 'esa', 'Thhalv10012707m.g' => 'esa', 'Thhalv10015739m.g' => 'esa', 'Thhalv10024553m.g' => 'esa', 'Thhalv10024673m.g' => 'esa', 'Thhalv10029187m.g' => 'esa', 'TPR.G12971' => 'tpr', 'TPR.G29396' => 'tpr', 'TPR.G33376' => 'tpr', 'TPR.G35508' => 'tpr', 'TPR.G35516' => 'tpr', 'TPR.G37317' => 'tpr', 'TPR.G37389' => 'tpr', 'TPR.G37523' => 'tpr', 'TPR.G559' => 'tpr', 'TWI14G0070' => 'twi', 'TWI14G0729' => 'twi', 'TWI18G0596' => 'twi', 'TWI39G0780' => 'twi', 'TWI39G0850' => 'twi', 'TWI73G1052' => 'twi', 'unitig_52.g17485' => 'ugi', 'unitig_61.g26355' => 'ugi', 'vmacro01040' => 'vma', 'vmacro16731' => 'vma', 'vmacro18270' => 'vma', 'vmacro19142' => 'vma', 'vmacro19407' => 'vma', 'vmacro19408' => 'vma', 'vmacro21899' => 'vma', 'vmacro21900' => 'vma', 'vmacro21901' => 'vma', 'VMungo0251G0490' => 'vmu', 'VMungo0251G1748' => 'vmu', 'VMungo1309G0421' => 'vmu', 'Zm00001eb086500' => 'zma', 'Zm00001eb150680' => 'zma', 'Zm00001eb162330' => 'zma', 'Zm00001eb203130' => 'zma', 'Zm00001eb369480' => 'zma', 'Zm00001eb382340' => 'zma', 'Zm00001eb416360' => 'zma' ) $gf_id = 'HOM05D000902' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000902' ) $data_identifier = 'HOM05D000902' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 13, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 10, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 6, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 9, 'hma' => (int) 12, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 4, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 6, 'ppa' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 6, 'rch' => (int) 9, 'rsi' => (int) 9, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 12, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 3, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416360' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000902', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '663', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02470' => 'bna', 'A01p16260' => 'bna', 'A02p01680' => 'bna', 'A03p16600' => 'bna', 'A03p55660' => 'bna', 'A03p64160' => 'bna', 'A03p64170' => 'bna', 'A08p31900' => 'bna', 'A09p59530' => 'bna', 'A10p08230' => 'bna', 'A10p25090' => 'bna', 'Aa31LG3G7100' => 'aar', 'Aa31LG3G7110' => 'aar', 'Aa31LG6G13160' => 'aar', 'Aa31LG7G10770' => 'aar', 'Aa31LG7G3830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2723' => 'aag', 'Actinidia08045' => 'ach', 'Actinidia08888' => 'ach', 'Actinidia18333' => 'ach', 'Actinidia19334' => 'ach', 'Actinidia25552' => 'ach', 'Actinidia26089' => 'ach', 'Actinidia30615' => 'ach', 'Actinidia30616' => 'ach', 'Actinidia33083' => 'ach', 'Actinidia35762' => 'ach', 'Ah.02g110620' => 'amhyb', 'Ah.11g046390' => 'amhyb', 'AL1G31670' => 'aly', 'AL6G23730' => 'aly', 'AL7G14740' => 'aly', 'AL7G14750' => 'aly', 'AL7G14760' => 'aly', 'AL7G28220' => 'aly', 'AL8G24940' => 'aly', 'Aqoxy3G01665' => 'aox', 'Aqoxy3G02853' => 'aox', 'Aqoxy5G01513' => 'aox', 'Aqoxy5G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8SKA4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ75LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKDA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0LJZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7REX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZP4YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWX7I5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2QKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS0L9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPCD8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q161UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC7XCF' => 'arhy', 'AT1G19100' => 'ath', 'AT4G24970' => 'ath', 'AT4G36270' => 'ath', 'AT4G36280' => 'ath', 'AT4G36290' => 'ath', 'AT5G13130' => 'ath', 'AT5G50780' => 'ath', 'ATR0582G266' => 'atr', 'ATR0661G195' => 'atr', 'ATR1152G031' => 'atr', 'Atru.chr11.2382' => 'acertr', 'Atru.chr12.2337' => 'acertr', 'Atru.chr3.744' => 'acertr', 'Atru.chr6.1870' => 'acertr', 'Atru.chr9.2515' => 'acertr', 'AUR62004120' => 'cqu', 'AUR62005667' => 'cqu', 'AUR62007634' => 'cqu', 'AUR62008186' => 'cqu', 'AUR62008187' => 'cqu', 'AUR62008188' => 'cqu', 'AUR62027954' => 'cqu', 'AUR62028766' => 'cqu', 'AUR62028767' => 'cqu', 'AUR62028768' => 'cqu', 'AUR62028886' => 'cqu', 'AUR62029563' => 'cqu', 'AUR62038832' => 'cqu', 'BcaB01g04149' => 'bca', 'BcaB03g12940' => 'bca', 'BcaB03g13090' => 'bca', 'BcaB03g14466' => 'bca', 'BcaB05g24035' => 'bca', 'BcaC01g06050' => 'bca', 'BcaC04g19148' => 'bca', 'BcaC04g20761' => 'bca', 'BcaC06g32845' => 'bca', 'BcaC07g41274' => 'bca', 'BcaC09g50827' => 'bca', 'BcaNung00741' => 'bca', 'BcaNung00742' => 'bca', 'BcaNung01859' => 'bca', 'BcaNung03985' => 'bca', 'BcaNung03989' => 'bca', 'BcaNung05661' => 'bca', 'BolC1t00257H' => 'bol', 'BolC1t01956H' => 'bol', 'BolC2t06534H' => 'bol', 'BolC3t14334H' => 'bol', 'BolC5t30451H' => 'bol', 'BolC7t45880H' => 'bol', 'BolC7t46586H' => 'bol', 'BolC8t49301H' => 'bol', 'BolC8t51837H' => 'bol', 'BolC9t56822H' => 'bol', 'BolC9t59235H' => 'bol', 'BraA01t00234Z' => 'bra', 'BraA01t01563Z' => 'bra', 'BraA02t05147Z' => 'bra', 'BraA03t10947Z' => 'bra', 'BraA03t14633Z' => 'bra', 'BraA08t35112Z' => 'bra', 'BraA09t41330Z' => 'bra', 'BraA10t44570Z' => 'bra', 'C01p02670' => 'bna', 'C01p20260' => 'bna', 'C02p05890' => 'bna', 'C03p19530' => 'bna', 'C05p17470' => 'bna', 'C07p53900' => 'bna', 'C07p61630' => 'bna', 'C08p16800' => 'bna', 'C08p42810' => 'bna', 'C09p39480' => 'bna', 'C09p63980' => 'bna', 'CAN.G1001.7' => 'can', 'CAN.G1034.55' => 'can', 'CAN.G143.7' => 'can', 'CAN.G3340.1' => 'can', 'CAN.G358.19' => 'can', 'CAN.G373.2' => 'can', 'CAN.G674.16' => 'can', 'CAN.G674.17' => 'can', 'CAN.G674.18' => 'can', 'CAN.G732.2' => 'can', 'CAN.G732.3' => 'can', 'CAN.G993.39' => 'can', 'CANSAT01G2052' => 'cansat', 'CANSAT80G0070' => 'cansat', 'CANSAT80G0483' => 'cansat', 'CANSAT80G0625' => 'cansat', 'CARHR019690' => 'chi', 'CARHR080280' => 'chi', 'CARHR152750' => 'chi', 'CARHR152760' => 'chi', 'CARHR152770' => 'chi', 'CARHR200340' => 'chi', 'CARHR232370' => 'chi', 'CARHR244670' => 'chi', 'CARHR244680' => 'chi', 'CARHR257520' => 'chi', 'Carub.0001s1872' => 'cru', 'Carub.0006s1130' => 'cru', 'Carub.0007s0396' => 'cru', 'Carub.0007s0397' => 'cru', 'Carub.0007s1608' => 'cru', 'Carub.0008s1068' => 'cru', 'Carub.0008s1077' => 'cru', 'Ca_16158_v3' => 'car', 'Ca_17571_v3' => 'car', 'Ca_21936_v3' => 'car', 'Ca_22350_v3' => 'car', 'CBR_g22445' => 'cbr', 'CBR_g26290' => 'cbr', 'Cc04_g09610' => 'ccan', 'Cc04_g12280' => 'ccan', 'Cc07_g10230' => 'ccan', 'CDE02G0093' => 'cde', 'CDE02G0701' => 'cde', 'CDE04G1050' => 'cde', 'CDE05G1833' => 'cde', 'CDE05G3058' => 'cde', 'CDE05G3380' => 'cde', 'CDE06G0536' => 'cde', 'Cfa006923' => 'cfa', 'Cfa009402' => 'cfa', 'Cfa018751' => 'cfa', 'Cfa019164' => 'cfa', 'Cfa022935' => 'cfa', 'Ciclev10019081m.g' => 'ccl', 'Ciclev10025076m.g' => 'ccl', 'Ciclev10030712m.g' => 'ccl', 'Ciclev10033760m.g' => 'ccl', 'CiPaw.05G105600' => 'cil', 'CiPaw.08G136700' => 'cil', 'CiPaw.11G003900' => 'cil', 'CiPaw.11G023700' => 'cil', 'CiPaw.12G003700' => 'cil', 'ClCG06G017100' => 'cla', 'ClCG06G018110' => 'cla', 'ClCG07G008800' => 'cla', 'ClCG07G015330' => 'cla', 'COL.COLO4_13698' => 'col', 'COL.COLO4_16659' => 'col', 'COL.COLO4_21986' => 'col', 'COL.COLO4_24049' => 'col', 'COL.COLO4_29061' => 'col', 'COL.COLO4_29075' => 'col', 'COL.COLO4_30094' => 'col', 'Cpa.g.c33689' => 'cpa', 'Cpa.g.sc108.39' => 'cpa', 'Cpa.g.sc108.41' => 'cpa', 'Cpa.g.sc1163.1' => 'cpa', 'Cpa.g.sc4.155' => 'cpa', 'Cpa.g.sc6.194' => 'cpa', 'CsaV3_1G000340' => 'csa', 'CsaV3_1G001400' => 'csa', 'CsaV3_4G002220' => 'csa', 'CsaV3_4G005370' => 'csa', 'CSS0007487' => 'camsi', 'CSS0008066' => 'camsi', 'CSS0009120' => 'camsi', 'CSS0015512' => 'camsi', 'CSS0022409' => 'camsi', 'CSS0025358' => 'camsi', 'CSS0044547' => 'camsi', 'DCAR_013057' => 'dca', 'DCAR_015058' => 'dca', 'DCAR_016027' => 'dca', 'DCAR_017327' => 'dca', 'DCAR_020743' => 'dca', 'DCAR_026157' => 'dca', 'DCAR_032339' => 'dca', 'DCAR_032340' => 'dca', 'Dinv11200' => 'din', 'Dinv11201' => 'din', 'Dinv20631' => 'din', 'Dinv23182' => 'din', 'Dinv33466' => 'din', 'Dinv33583' => 'din', 'Dinv38565' => 'din', 'Duzib068G0200' => 'dzi', 'Duzib147G0132' => 'dzi', 'Duzib147G0635' => 'dzi', 'Duzib205G1670' => 'dzi', 'Duzib251G0606' => 'dzi', 'ECA232G3336' => 'eca', 'ECA232G3763' => 'eca', 'ECA232G4845' => 'eca', 'ECA234G1607' => 'eca', 'ECA246G0932' => 'eca', 'ECA247G0781' => 'eca', 'ECA247G1932' => 'eca', 'ECA247G2079' => 'eca', 'ECA247G3338' => 'eca', 'ECA247G4115' => 'eca', 'EL10Ac3g06552' => 'bvu', 'EL10Ac5g10721' => 'bvu', 'EL10Ac5g10722' => 'bvu', 'EL10Ac5g10723' => 'bvu', 'EL10Ac5g11361' => 'bvu', 'EL10Ac6g13553' => 'bvu', 'EL10As8g23872' => 'bvu', 'Eucgr.B00250' => 'egr', 'Eucgr.B00251' => 'egr', 'Eucgr.B03533' => 'egr', 'Eucgr.I02381' => 'egr', 'Eucgr.K02700' => 'egr', 'FAN02G0174' => 'fan', 'FAN02G3146' => 'fan', 'FAN04G1672' => 'fan', 'FAN04G2273' => 'fan', 'FAN05G2791' => 'fan', 'FAN05G4035' => 'fan', 'FAN07G0834' => 'fan', 'FAN08G1198' => 'fan', 'FAN09G4182' => 'fan', 'FAN12G0496' => 'fan', 'FAN13G1027' => 'fan', 'FAN13G2951' => 'fan', 'FAN14G0705' => 'fan', 'FAN14G0720' => 'fan', 'FAN17G0201' => 'fan', 'FAN17G2665' => 'fan', 'FAN18G1456' => 'fan', 'FAN18G1525' => 'fan', 'FAN18G3500' => 'fan', 'FAN28G2670' => 'fan', 'FvH4_1g12391' => 'fve', 'FvH4_4g23220' => 'fve', 'FvH4_5g08810' => 'fve', 'FvH4_5g28960' => 'fve', 'FvH4_6g42820' => 'fve', 'FvH4_6g51110' => 'fve', 'Glyma.02G051802' => 'gma', 'Glyma.04G185300' => 'gma', 'Glyma.05G202900' => 'gma', 'Glyma.08G010300' => 'gma', 'Glyma.16G131900' => 'gma', 'Glyma.17G087900' => 'gma', 'Gohir.A07G048600' => 'ghi', 'Gohir.A11G179000' => 'ghi', 'Gohir.A12G140900' => 'ghi', 'Gohir.A12G140950' => 'ghi', 'Gohir.A12G191700' => 'ghi', 'Gohir.A13G086300' => 'ghi', 'Gohir.D07G052900' => 'ghi', 'Gohir.D11G186600' => 'ghi', 'Gohir.D12G145575' => 'ghi', 'Gohir.D12G145650' => 'ghi', 'Gohir.D12G145725' => 'ghi', 'Gohir.D12G194050' => 'ghi', 'Gohir.D13G091800' => 'ghi', 'Gorai.001G055900' => 'gra', 'Gorai.007G198400' => 'gra', 'Gorai.008G157000' => 'gra', 'Gorai.008G157100' => 'gra', 'Gorai.008G208700' => 'gra', 'Gorai.010G138700' => 'gra', 'GSVIVG01000977001' => 'vvi', 'GSVIVG01007708001' => 'vvi', 'GSVIVG01008587001' => 'vvi', 'GSVIVG01018849001' => 'vvi', 'GSVIVG01032432001' => 'vvi', 'HanXRQChr02g0034131' => 'han', 'HanXRQChr02g0035981' => 'han', 'HanXRQChr02g0035991' => 'han', 'HanXRQChr05g0155611' => 'han', 'HanXRQChr05g0155621' => 'han', 'HanXRQChr08g0236501' => 'han', 'HanXRQChr09g0261321' => 'han', 'HanXRQChr09g0272081' => 'han', 'HanXRQChr10g0310741' => 'han', 'HanXRQChr11g0325591' => 'han', 'HanXRQChr12g0385691' => 'han', 'HanXRQChr13g0387801' => 'han', 'HanXRQChr15g0463011' => 'han', 'Haze_03826' => 'cav', 'Haze_03827' => 'cav', 'Haze_07183' => 'cav', 'Haze_07537' => 'cav', 'Haze_07539' => 'cav', 'Haze_12461' => 'cav', 'Haze_16115' => 'cav', 'Haze_16808' => 'cav', 'Haze_18531' => 'cav', 'Hma1.2p1_0046F.1_g026700' => 'hma', 'Hma1.2p1_0046F.1_g026710' => 'hma', 'Hma1.2p1_0168F.1_g074340' => 'hma', 'Hma1.2p1_0266F.1_g107030' => 'hma', 'Hma1.2p1_0266F.1_g107060' => 'hma', 'Hma1.2p1_0275F.1_g110510' => 'hma', 'Hma1.2p1_0592F.1_g185490' => 'hma', 'Hma1.2p1_0592F.1_g185500' => 'hma', 'Hma1.2p1_0592F.1_g185510' => 'hma', 'Hma1.2p1_0592F.1_g185520' => 'hma', 'Hma1.2p1_0592F.1_g185530' => 'hma', 'Hma1.2p1_0818F.1_g223450' => 'hma', 'HPP92_009708' => 'vpl', 'HPP92_009793' => 'vpl', 'HPP92_009796' => 'vpl', 'HPP92_009797' => 'vpl', 'HPP92_014940' => 'vpl', 'HPP92_014988' => 'vpl', 'Hund02463' => 'sun', 'Hund02760' => 'sun', 'Hund05071' => 'sun', 'Hund10108' => 'sun', 'Hund11204' => 'sun', 'Hund14016' => 'sun', 'Hund16464' => 'sun', 'Lalb_Chr09g0333391' => 'lal', 'Lalb_Chr11g0070461' => 'lal', 'Lalb_Chr12g0201671' => 'lal', 'Lalb_Chr13g0297161' => 'lal', 'Lj1g0002823' => 'lja', 'Lj3C1074T6' => 'lonja', 'Lj4A212T28' => 'lonja', 'Lj4g0005516' => 'lja', 'Lj4g0013705' => 'lja', 'Lj4g0027865' => 'lja', 'Lj5C92G16' => 'lonja', 'Lj5C92T12' => 'lonja', 'Lj7C596T3' => 'lonja', 'Lj9A446G59' => 'lonja', 'Lj9A482G21' => 'lonja', 'Lsat_1_v5_gn_1_28261' => 'lsa', 'Lsat_1_v5_gn_1_28281' => 'lsa', 'Lsat_1_v5_gn_1_32721' => 'lsa', 'Lsat_1_v5_gn_4_151760' => 'lsa', 'Lsat_1_v5_gn_4_2120' => 'lsa', 'Lsat_1_v5_gn_4_75761' => 'lsa', 'Lsat_1_v5_gn_5_10920' => 'lsa', 'Manes.02G099900' => 'mes', 'Manes.11G096200' => 'mes', 'Manes.12G007200' => 'mes', 'Manes.14G048300' => 'mes', 'Manes.17G114700' => 'mes', 'Mapoly0002s0070' => 'mpo', 'Mapoly0029s0099' => 'mpo', 'MBI07_g24742_MAGBIO' => 'mbi', 'MBI10_g27988_MAGBIO' => 'mbi', 'MBI11_g13057_MAGBIO' => 'mbi', 'MD02G1137200' => 'mdo', 'MD06G1137200' => 'mdo', 'MD07G1122300' => 'mdo', 'MD09G1078200' => 'mdo', 'MD13G1123700' => 'mdo', 'MD14G1151900' => 'mdo', 'MD17G1030900' => 'mdo', 'MD17G1068200' => 'mdo', 'MD17G1068600' => 'mdo', 'Medtr3g077540' => 'mtr', 'Medtr4g105530' => 'mtr', 'Medtr8g076580' => 'mtr', 'Medtr8g076590' => 'mtr', 'Medtr8g096410' => 'mtr', 'MELO3C016411.2' => 'cme', 'MELO3C017780.2' => 'cme', 'MELO3C022560.2' => 'cme', 'MELO3C026187.2' => 'cme', 'MELO3C026286.2' => 'cme', 'MELO3C032854.2' => 'cme', 'Migut.H02495' => 'egut', 'Migut.I00561' => 'egut', 'Migut.K01015' => 'egut', 'Migut.K01016' => 'egut', 'Migut.L00743' => 'egut', 'Migut.L00744' => 'egut', 'Migut.L00746' => 'egut', 'Migut.L00798' => 'egut', 'Migut.L00799' => 'egut', 'Migut.N02096' => 'egut', 'MSTRG.11259' => 'ama', 'MSTRG.23142' => 'ama', 'MSTRG.2499' => 'ama', 'Nitab4.5_0000003g0730' => 'nta', 'Nitab4.5_0000137g0020' => 'nta', 'Nitab4.5_0000721g0210' => 'nta', 'Nitab4.5_0000723g0050' => 'nta', 'Nitab4.5_0000913g0070' => 'nta', 'Nitab4.5_0001332g0040' => 'nta', 'Nitab4.5_0001771g0050' => 'nta', 'Nitab4.5_0001918g0050' => 'nta', 'Nitab4.5_0002686g0030' => 'nta', 'Nitab4.5_0003156g0020' => 'nta', 'Nitab4.5_0003383g0040' => 'nta', 'Nitab4.5_0003918g0010' => 'nta', 'Nitab4.5_0006760g0010' => 'nta', 'Nn1g05981' => 'nnu', 'Nn1g06288' => 'nnu', 'Nn3g16371' => 'nnu', 'Nn3g16786' => 'nnu', 'Nn4g22232' => 'nnu', 'Oeu005144.1' => 'oeu', 'Oeu005145.1' => 'oeu', 'Oeu011348.1' => 'oeu', 'Oeu016415.1' => 'oeu', 'Oeu023501.1' => 'oeu', 'Oeu044473.1' => 'oeu', 'Oeu048892.2' => 'oeu', 'Os01g0549200' => 'osa', 'Os02g0469300' => 'osa', 'Os04g0311100' => 'osa', 'Os06g0474900' => 'osa', 'Os10g0181700' => 'osa', 'Os11g0454800' => 'osa', 'Peaxi162Scf00037g00714' => 'pax', 'Peaxi162Scf00084g01217' => 'pax', 'Peaxi162Scf00257g00217' => 'pax', 'Peaxi162Scf00516g00215' => 'pax', 'Peaxi162Scf00689g00123' => 'pax', 'PGR044G2719' => 'pgr', 'PGR083G1360' => 'pgr', 'PGR102G2849' => 'pgr', 'PGR119G2534' => 'pgr', 'PGSC0003DMG400003538' => 'stu', 'PGSC0003DMG400028138' => 'stu', 'PGSC0003DMG400031732' => 'stu', 'PGSC0003DMG400038165' => 'stu', 'Phvul.002G284600' => 'pvu', 'Phvul.003G258200' => 'pvu', 'Phvul.009G176500' => 'pvu', 'Potri.003G167201' => 'ptr', 'Potri.005G118400' => 'ptr', 'Potri.012G089000' => 'ptr', 'Potri.012G102800' => 'ptr', 'Potri.015G079400' => 'ptr', 'Potri.015G100900' => 'ptr', 'Pp3c14_9810' => 'ppa', 'Pp3c15_10450' => 'ppa', 'Pp3c20_19150' => 'ppa', 'Pp3c23_12740' => 'ppa', 'Pp3c23_6310' => 'ppa', 'Pp3c24_3720' => 'ppa', 'Pp3c27_2580' => 'ppa', 'Pp3c9_8990' => 'ppa', 'PRCOL_00002854' => 'pco', 'Prupe.1G221200' => 'ppe', 'Prupe.3G289000' => 'ppe', 'Prupe.5G147000' => 'ppe', 'Prupe.6G157300' => 'ppe', 'Prupe.7G163400' => 'ppe', 'Psat0s2177g0040' => 'psa', 'Psat3g174760' => 'psa', 'Psat3g192160' => 'psa', 'Psat4g058520' => 'psa', 'Psat4g096840' => 'psa', 'Psat7g037320' => 'psa', 'PSO017G1274' => 'pso', 'PSO017G5166' => 'pso', 'PSO063G4558' => 'pso', 'PSO170G4458' => 'pso', 'PSO170G5005' => 'pso', 'PSO210G6156' => 'pso', 'PSO210G6635' => 'pso', 'PSO210G7397' => 'pso', 'PSO210G7700' => 'pso', 'PSO455G0035' => 'pso', 'PSO455G0180' => 'pso', 'PSO478G4515' => 'pso', 'PSO832G1305' => 'pso', 'PSO832G3489' => 'pso', 'QL02p075247' => 'qlo', 'QL03p051148' => 'qlo', 'QL05p010313' => 'qlo', 'QL06p034627' => 'qlo', 'QL10p001889' => 'qlo', 'QL10p010846' => 'qlo', 'RcHm_v2.0_Chr1g0350621' => 'rch', 'RcHm_v2.0_Chr1g0350641' => 'rch', 'RcHm_v2.0_Chr2g0092891' => 'rch', 'RcHm_v2.0_Chr2g0100251' => 'rch', 'RcHm_v2.0_Chr2g0158661' => 'rch', 'RcHm_v2.0_Chr2g0172741' => 'rch', 'RcHm_v2.0_Chr4g0429571' => 'rch', 'RcHm_v2.0_Chr5g0042471' => 'rch', 'RcHm_v2.0_Chr7g0189451' => 'rch', 'Rhsim08G0052000' => 'rsi', 'Rhsim08G0174400' => 'rsi', 'Rhsim08G0193200' => 'rsi', 'Rhsim10G0214800' => 'rsi', 'Rhsim10G0214900' => 'rsi', 'Rhsim10G0215000' => 'rsi', 'Rhsim12G0022900' => 'rsi', 'Rhsim12G0177500' => 'rsi', 'Rhsim12G0177700' => 'rsi', 'Sabra03G0122600' => 'sbr', 'Sabra05G0097400' => 'sbr', 'Sabra12G0064100' => 'sbr', 'Sabra15G0121300' => 'sbr', 'SalBow2G0642' => 'sbo', 'SalBow5G2667' => 'sbo', 'SalBow5G4873' => 'sbo', 'SalBow8G2395' => 'sbo', 'Sc03g0003290' => 'sci', 'Sc10g0010130' => 'sci', 'Sc22g0003650' => 'sci', 'Sed0001603' => 'sed', 'Sed0004259' => 'sed', 'Sed0006789' => 'sed', 'Sed0011838' => 'sed', 'Sed0012964' => 'sed', 'Sed0016383' => 'sed', 'Sed0019010' => 'sed', 'Sed0020188' => 'sed', 'SEGI_04702' => 'sgi', 'SEGI_17231' => 'sgi', 'SEGI_18877' => 'sgi', 'SEGI_25196' => 'sgi', 'SEGI_25515' => 'sgi', 'SEGI_28445' => 'sgi', 'SEGI_37452' => 'sgi', 'SGA_v2.0_scaffold188G40336' => 'sas', 'SGA_v2.0_scaffold228G43247' => 'sas', 'SGA_v2.0_scaffold280G46853' => 'sas', 'SGA_v2.0_scaffold34G13808' => 'sas', 'SGA_v2.0_scaffold40G15576' => 'sas', 'SGA_v2.0_scaffold611G53188' => 'sas', 'SGA_v2.0_scaffold78G25461' => 'sas', 'SGA_v2.0_scaffold90G27888' => 'sas', 'SHI08601' => 'shi', 'SHI08606' => 'shi', 'SHI17117' => 'shi', 'SHI17119' => 'shi', 'SMO118G0201' => 'smo', 'SMO169G0247' => 'smo', 'SMO176G0006' => 'smo', 'SMO176G0015' => 'smo', 'SMO202G0006' => 'smo', 'SMO240G0050' => 'smo', 'SMO286G0009' => 'smo', 'SMO338G0033' => 'smo', 'SMO356G0533' => 'smo', 'SMO364G0382' => 'smo', 'SMO367G0166' => 'smo', 'SMO367G1098' => 'smo', 'Solyc01g009920.3' => 'sly', 'Solyc01g099300.3' => 'sly', 'Solyc02g084700.3' => 'sly', 'Solyc03g097520.3' => 'sly', 'Solyc06g071580.3' => 'sly', 'Solyc10g081760.3' => 'sly', 'Sopen01g005480' => 'spe', 'Sopen01g042850' => 'spe', 'Sopen02g029370' => 'spe', 'Sopen03g028280' => 'spe', 'Sopen06g027870' => 'spe', 'Sopen10g032270' => 'spe', 'Sp5g18180' => 'spa', 'Sp6g12880' => 'spa', 'Sp6g30850' => 'spa', 'Sp7g22960' => 'spa', 'Sp7g34010' => 'spa', 'SpUn1326_0010' => 'spa', 'TAR371G0242' => 'tar', 'TAR622G0638' => 'tar', 'TAR628G1548' => 'tar', 'TAR629G1079' => 'tar', 'TAR629G3413' => 'tar', 'THA.LOC104804249' => 'tha', 'THA.LOC104808315' => 'tha', 'THA.LOC104809238' => 'tha', 'THA.LOC104825484' => 'tha', 'Thecc.01G025500' => 'tca', 'Thecc.03G015800' => 'tca', 'Thecc.03G018000' => 'tca', 'Thecc.03G134800' => 'tca', 'Thecc.04G014700' => 'tca', 'Thhalv10006991m.g' => 'esa', 'Thhalv10012707m.g' => 'esa', 'Thhalv10015739m.g' => 'esa', 'Thhalv10024553m.g' => 'esa', 'Thhalv10024673m.g' => 'esa', 'Thhalv10029187m.g' => 'esa', 'TPR.G12971' => 'tpr', 'TPR.G29396' => 'tpr', 'TPR.G33376' => 'tpr', 'TPR.G35508' => 'tpr', 'TPR.G35516' => 'tpr', 'TPR.G37317' => 'tpr', 'TPR.G37389' => 'tpr', 'TPR.G37523' => 'tpr', 'TPR.G559' => 'tpr', 'TWI14G0070' => 'twi', 'TWI14G0729' => 'twi', 'TWI18G0596' => 'twi', 'TWI39G0780' => 'twi', 'TWI39G0850' => 'twi', 'TWI73G1052' => 'twi', 'unitig_52.g17485' => 'ugi', 'unitig_61.g26355' => 'ugi', 'vmacro01040' => 'vma', 'vmacro16731' => 'vma', 'vmacro18270' => 'vma', 'vmacro19142' => 'vma', 'vmacro19407' => 'vma', 'vmacro19408' => 'vma', 'vmacro21899' => 'vma', 'vmacro21900' => 'vma', 'vmacro21901' => 'vma', 'VMungo0251G0490' => 'vmu', 'VMungo0251G1748' => 'vmu', 'VMungo1309G0421' => 'vmu', 'Zm00001eb086500' => 'zma', 'Zm00001eb150680' => 'zma', 'Zm00001eb162330' => 'zma', 'Zm00001eb203130' => 'zma', 'Zm00001eb369480' => 'zma', 'Zm00001eb382340' => 'zma', 'Zm00001eb416360' => 'zma' ), 'gf_id' => 'HOM05D000902', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000902' ), 'data_identifier' => 'HOM05D000902', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000902', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '663', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02470' => 'bna', 'A01p16260' => 'bna', 'A02p01680' => 'bna', 'A03p16600' => 'bna', 'A03p55660' => 'bna', 'A03p64160' => 'bna', 'A03p64170' => 'bna', 'A08p31900' => 'bna', 'A09p59530' => 'bna', 'A10p08230' => 'bna', 'A10p25090' => 'bna', 'Aa31LG3G7100' => 'aar', 'Aa31LG3G7110' => 'aar', 'Aa31LG6G13160' => 'aar', 'Aa31LG7G10770' => 'aar', 'Aa31LG7G3830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2723' => 'aag', 'Actinidia08045' => 'ach', 'Actinidia08888' => 'ach', 'Actinidia18333' => 'ach', 'Actinidia19334' => 'ach', 'Actinidia25552' => 'ach', 'Actinidia26089' => 'ach', 'Actinidia30615' => 'ach', 'Actinidia30616' => 'ach', 'Actinidia33083' => 'ach', 'Actinidia35762' => 'ach', 'Ah.02g110620' => 'amhyb', 'Ah.11g046390' => 'amhyb', 'AL1G31670' => 'aly', 'AL6G23730' => 'aly', 'AL7G14740' => 'aly', 'AL7G14750' => 'aly', 'AL7G14760' => 'aly', 'AL7G28220' => 'aly', 'AL8G24940' => 'aly', 'Aqoxy3G01665' => 'aox', 'Aqoxy3G02853' => 'aox', 'Aqoxy5G01513' => 'aox', 'Aqoxy5G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8SKA4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ75LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKDA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0LJZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7REX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZP4YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWX7I5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2QKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS0L9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPCD8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q161UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC7XCF' => 'arhy', 'AT1G19100' => 'ath', 'AT4G24970' => 'ath', 'AT4G36270' => 'ath', 'AT4G36280' => 'ath', 'AT4G36290' => 'ath', 'AT5G13130' => 'ath', 'AT5G50780' => 'ath', 'ATR0582G266' => 'atr', 'ATR0661G195' => 'atr', 'ATR1152G031' => 'atr', 'Atru.chr11.2382' => 'acertr', 'Atru.chr12.2337' => 'acertr', 'Atru.chr3.744' => 'acertr', 'Atru.chr6.1870' => 'acertr', 'Atru.chr9.2515' => 'acertr', 'AUR62004120' => 'cqu', 'AUR62005667' => 'cqu', 'AUR62007634' => 'cqu', 'AUR62008186' => 'cqu', 'AUR62008187' => 'cqu', 'AUR62008188' => 'cqu', 'AUR62027954' => 'cqu', 'AUR62028766' => 'cqu', 'AUR62028767' => 'cqu', 'AUR62028768' => 'cqu', 'AUR62028886' => 'cqu', 'AUR62029563' => 'cqu', 'AUR62038832' => 'cqu', 'BcaB01g04149' => 'bca', 'BcaB03g12940' => 'bca', 'BcaB03g13090' => 'bca', 'BcaB03g14466' => 'bca', 'BcaB05g24035' => 'bca', 'BcaC01g06050' => 'bca', 'BcaC04g19148' => 'bca', 'BcaC04g20761' => 'bca', 'BcaC06g32845' => 'bca', 'BcaC07g41274' => 'bca', 'BcaC09g50827' => 'bca', 'BcaNung00741' => 'bca', 'BcaNung00742' => 'bca', 'BcaNung01859' => 'bca', 'BcaNung03985' => 'bca', 'BcaNung03989' => 'bca', 'BcaNung05661' => 'bca', 'BolC1t00257H' => 'bol', 'BolC1t01956H' => 'bol', 'BolC2t06534H' => 'bol', 'BolC3t14334H' => 'bol', 'BolC5t30451H' => 'bol', 'BolC7t45880H' => 'bol', 'BolC7t46586H' => 'bol', 'BolC8t49301H' => 'bol', 'BolC8t51837H' => 'bol', 'BolC9t56822H' => 'bol', 'BolC9t59235H' => 'bol', 'BraA01t00234Z' => 'bra', 'BraA01t01563Z' => 'bra', 'BraA02t05147Z' => 'bra', 'BraA03t10947Z' => 'bra', 'BraA03t14633Z' => 'bra', 'BraA08t35112Z' => 'bra', 'BraA09t41330Z' => 'bra', 'BraA10t44570Z' => 'bra', 'C01p02670' => 'bna', 'C01p20260' => 'bna', 'C02p05890' => 'bna', 'C03p19530' => 'bna', 'C05p17470' => 'bna', 'C07p53900' => 'bna', 'C07p61630' => 'bna', 'C08p16800' => 'bna', 'C08p42810' => 'bna', 'C09p39480' => 'bna', 'C09p63980' => 'bna', 'CAN.G1001.7' => 'can', 'CAN.G1034.55' => 'can', 'CAN.G143.7' => 'can', 'CAN.G3340.1' => 'can', 'CAN.G358.19' => 'can', 'CAN.G373.2' => 'can', 'CAN.G674.16' => 'can', 'CAN.G674.17' => 'can', 'CAN.G674.18' => 'can', 'CAN.G732.2' => 'can', 'CAN.G732.3' => 'can', 'CAN.G993.39' => 'can', 'CANSAT01G2052' => 'cansat', 'CANSAT80G0070' => 'cansat', 'CANSAT80G0483' => 'cansat', 'CANSAT80G0625' => 'cansat', 'CARHR019690' => 'chi', 'CARHR080280' => 'chi', 'CARHR152750' => 'chi', 'CARHR152760' => 'chi', 'CARHR152770' => 'chi', 'CARHR200340' => 'chi', 'CARHR232370' => 'chi', 'CARHR244670' => 'chi', 'CARHR244680' => 'chi', 'CARHR257520' => 'chi', 'Carub.0001s1872' => 'cru', 'Carub.0006s1130' => 'cru', 'Carub.0007s0396' => 'cru', 'Carub.0007s0397' => 'cru', 'Carub.0007s1608' => 'cru', 'Carub.0008s1068' => 'cru', 'Carub.0008s1077' => 'cru', 'Ca_16158_v3' => 'car', 'Ca_17571_v3' => 'car', 'Ca_21936_v3' => 'car', 'Ca_22350_v3' => 'car', 'CBR_g22445' => 'cbr', 'CBR_g26290' => 'cbr', 'Cc04_g09610' => 'ccan', 'Cc04_g12280' => 'ccan', 'Cc07_g10230' => 'ccan', 'CDE02G0093' => 'cde', 'CDE02G0701' => 'cde', 'CDE04G1050' => 'cde', 'CDE05G1833' => 'cde', 'CDE05G3058' => 'cde', 'CDE05G3380' => 'cde', 'CDE06G0536' => 'cde', 'Cfa006923' => 'cfa', 'Cfa009402' => 'cfa', 'Cfa018751' => 'cfa', 'Cfa019164' => 'cfa', 'Cfa022935' => 'cfa', 'Ciclev10019081m.g' => 'ccl', 'Ciclev10025076m.g' => 'ccl', 'Ciclev10030712m.g' => 'ccl', 'Ciclev10033760m.g' => 'ccl', 'CiPaw.05G105600' => 'cil', 'CiPaw.08G136700' => 'cil', 'CiPaw.11G003900' => 'cil', 'CiPaw.11G023700' => 'cil', 'CiPaw.12G003700' => 'cil', 'ClCG06G017100' => 'cla', 'ClCG06G018110' => 'cla', 'ClCG07G008800' => 'cla', 'ClCG07G015330' => 'cla', 'COL.COLO4_13698' => 'col', 'COL.COLO4_16659' => 'col', 'COL.COLO4_21986' => 'col', 'COL.COLO4_24049' => 'col', 'COL.COLO4_29061' => 'col', 'COL.COLO4_29075' => 'col', 'COL.COLO4_30094' => 'col', 'Cpa.g.c33689' => 'cpa', 'Cpa.g.sc108.39' => 'cpa', 'Cpa.g.sc108.41' => 'cpa', 'Cpa.g.sc1163.1' => 'cpa', 'Cpa.g.sc4.155' => 'cpa', 'Cpa.g.sc6.194' => 'cpa', 'CsaV3_1G000340' => 'csa', 'CsaV3_1G001400' => 'csa', 'CsaV3_4G002220' => 'csa', 'CsaV3_4G005370' => 'csa', 'CSS0007487' => 'camsi', 'CSS0008066' => 'camsi', 'CSS0009120' => 'camsi', 'CSS0015512' => 'camsi', 'CSS0022409' => 'camsi', 'CSS0025358' => 'camsi', 'CSS0044547' => 'camsi', 'DCAR_013057' => 'dca', 'DCAR_015058' => 'dca', 'DCAR_016027' => 'dca', 'DCAR_017327' => 'dca', 'DCAR_020743' => 'dca', 'DCAR_026157' => 'dca', 'DCAR_032339' => 'dca', 'DCAR_032340' => 'dca', 'Dinv11200' => 'din', 'Dinv11201' => 'din', 'Dinv20631' => 'din', 'Dinv23182' => 'din', 'Dinv33466' => 'din', 'Dinv33583' => 'din', 'Dinv38565' => 'din', 'Duzib068G0200' => 'dzi', 'Duzib147G0132' => 'dzi', 'Duzib147G0635' => 'dzi', 'Duzib205G1670' => 'dzi', 'Duzib251G0606' => 'dzi', 'ECA232G3336' => 'eca', 'ECA232G3763' => 'eca', 'ECA232G4845' => 'eca', 'ECA234G1607' => 'eca', 'ECA246G0932' => 'eca', 'ECA247G0781' => 'eca', 'ECA247G1932' => 'eca', 'ECA247G2079' => 'eca', 'ECA247G3338' => 'eca', 'ECA247G4115' => 'eca', 'EL10Ac3g06552' => 'bvu', 'EL10Ac5g10721' => 'bvu', 'EL10Ac5g10722' => 'bvu', 'EL10Ac5g10723' => 'bvu', 'EL10Ac5g11361' => 'bvu', 'EL10Ac6g13553' => 'bvu', 'EL10As8g23872' => 'bvu', 'Eucgr.B00250' => 'egr', 'Eucgr.B00251' => 'egr', 'Eucgr.B03533' => 'egr', 'Eucgr.I02381' => 'egr', 'Eucgr.K02700' => 'egr', 'FAN02G0174' => 'fan', 'FAN02G3146' => 'fan', 'FAN04G1672' => 'fan', 'FAN04G2273' => 'fan', 'FAN05G2791' => 'fan', 'FAN05G4035' => 'fan', 'FAN07G0834' => 'fan', 'FAN08G1198' => 'fan', 'FAN09G4182' => 'fan', 'FAN12G0496' => 'fan', 'FAN13G1027' => 'fan', 'FAN13G2951' => 'fan', 'FAN14G0705' => 'fan', 'FAN14G0720' => 'fan', 'FAN17G0201' => 'fan', 'FAN17G2665' => 'fan', 'FAN18G1456' => 'fan', 'FAN18G1525' => 'fan', 'FAN18G3500' => 'fan', 'FAN28G2670' => 'fan', 'FvH4_1g12391' => 'fve', 'FvH4_4g23220' => 'fve', 'FvH4_5g08810' => 'fve', 'FvH4_5g28960' => 'fve', 'FvH4_6g42820' => 'fve', 'FvH4_6g51110' => 'fve', 'Glyma.02G051802' => 'gma', 'Glyma.04G185300' => 'gma', 'Glyma.05G202900' => 'gma', 'Glyma.08G010300' => 'gma', 'Glyma.16G131900' => 'gma', 'Glyma.17G087900' => 'gma', 'Gohir.A07G048600' => 'ghi', 'Gohir.A11G179000' => 'ghi', 'Gohir.A12G140900' => 'ghi', 'Gohir.A12G140950' => 'ghi', 'Gohir.A12G191700' => 'ghi', 'Gohir.A13G086300' => 'ghi', 'Gohir.D07G052900' => 'ghi', 'Gohir.D11G186600' => 'ghi', 'Gohir.D12G145575' => 'ghi', 'Gohir.D12G145650' => 'ghi', 'Gohir.D12G145725' => 'ghi', 'Gohir.D12G194050' => 'ghi', 'Gohir.D13G091800' => 'ghi', 'Gorai.001G055900' => 'gra', 'Gorai.007G198400' => 'gra', 'Gorai.008G157000' => 'gra', 'Gorai.008G157100' => 'gra', 'Gorai.008G208700' => 'gra', 'Gorai.010G138700' => 'gra', 'GSVIVG01000977001' => 'vvi', 'GSVIVG01007708001' => 'vvi', 'GSVIVG01008587001' => 'vvi', 'GSVIVG01018849001' => 'vvi', 'GSVIVG01032432001' => 'vvi', 'HanXRQChr02g0034131' => 'han', 'HanXRQChr02g0035981' => 'han', 'HanXRQChr02g0035991' => 'han', 'HanXRQChr05g0155611' => 'han', 'HanXRQChr05g0155621' => 'han', 'HanXRQChr08g0236501' => 'han', 'HanXRQChr09g0261321' => 'han', 'HanXRQChr09g0272081' => 'han', 'HanXRQChr10g0310741' => 'han', 'HanXRQChr11g0325591' => 'han', 'HanXRQChr12g0385691' => 'han', 'HanXRQChr13g0387801' => 'han', 'HanXRQChr15g0463011' => 'han', 'Haze_03826' => 'cav', 'Haze_03827' => 'cav', 'Haze_07183' => 'cav', 'Haze_07537' => 'cav', 'Haze_07539' => 'cav', 'Haze_12461' => 'cav', 'Haze_16115' => 'cav', 'Haze_16808' => 'cav', 'Haze_18531' => 'cav', 'Hma1.2p1_0046F.1_g026700' => 'hma', 'Hma1.2p1_0046F.1_g026710' => 'hma', 'Hma1.2p1_0168F.1_g074340' => 'hma', 'Hma1.2p1_0266F.1_g107030' => 'hma', 'Hma1.2p1_0266F.1_g107060' => 'hma', 'Hma1.2p1_0275F.1_g110510' => 'hma', 'Hma1.2p1_0592F.1_g185490' => 'hma', 'Hma1.2p1_0592F.1_g185500' => 'hma', 'Hma1.2p1_0592F.1_g185510' => 'hma', 'Hma1.2p1_0592F.1_g185520' => 'hma', 'Hma1.2p1_0592F.1_g185530' => 'hma', 'Hma1.2p1_0818F.1_g223450' => 'hma', 'HPP92_009708' => 'vpl', 'HPP92_009793' => 'vpl', 'HPP92_009796' => 'vpl', 'HPP92_009797' => 'vpl', 'HPP92_014940' => 'vpl', 'HPP92_014988' => 'vpl', 'Hund02463' => 'sun', 'Hund02760' => 'sun', 'Hund05071' => 'sun', 'Hund10108' => 'sun', 'Hund11204' => 'sun', 'Hund14016' => 'sun', 'Hund16464' => 'sun', 'Lalb_Chr09g0333391' => 'lal', 'Lalb_Chr11g0070461' => 'lal', 'Lalb_Chr12g0201671' => 'lal', 'Lalb_Chr13g0297161' => 'lal', 'Lj1g0002823' => 'lja', 'Lj3C1074T6' => 'lonja', 'Lj4A212T28' => 'lonja', 'Lj4g0005516' => 'lja', 'Lj4g0013705' => 'lja', 'Lj4g0027865' => 'lja', 'Lj5C92G16' => 'lonja', 'Lj5C92T12' => 'lonja', 'Lj7C596T3' => 'lonja', 'Lj9A446G59' => 'lonja', 'Lj9A482G21' => 'lonja', 'Lsat_1_v5_gn_1_28261' => 'lsa', 'Lsat_1_v5_gn_1_28281' => 'lsa', 'Lsat_1_v5_gn_1_32721' => 'lsa', 'Lsat_1_v5_gn_4_151760' => 'lsa', 'Lsat_1_v5_gn_4_2120' => 'lsa', 'Lsat_1_v5_gn_4_75761' => 'lsa', 'Lsat_1_v5_gn_5_10920' => 'lsa', 'Manes.02G099900' => 'mes', 'Manes.11G096200' => 'mes', 'Manes.12G007200' => 'mes', 'Manes.14G048300' => 'mes', 'Manes.17G114700' => 'mes', 'Mapoly0002s0070' => 'mpo', 'Mapoly0029s0099' => 'mpo', 'MBI07_g24742_MAGBIO' => 'mbi', 'MBI10_g27988_MAGBIO' => 'mbi', 'MBI11_g13057_MAGBIO' => 'mbi', 'MD02G1137200' => 'mdo', 'MD06G1137200' => 'mdo', 'MD07G1122300' => 'mdo', 'MD09G1078200' => 'mdo', 'MD13G1123700' => 'mdo', 'MD14G1151900' => 'mdo', 'MD17G1030900' => 'mdo', 'MD17G1068200' => 'mdo', 'MD17G1068600' => 'mdo', 'Medtr3g077540' => 'mtr', 'Medtr4g105530' => 'mtr', 'Medtr8g076580' => 'mtr', 'Medtr8g076590' => 'mtr', 'Medtr8g096410' => 'mtr', 'MELO3C016411.2' => 'cme', 'MELO3C017780.2' => 'cme', 'MELO3C022560.2' => 'cme', 'MELO3C026187.2' => 'cme', 'MELO3C026286.2' => 'cme', 'MELO3C032854.2' => 'cme', 'Migut.H02495' => 'egut', 'Migut.I00561' => 'egut', 'Migut.K01015' => 'egut', 'Migut.K01016' => 'egut', 'Migut.L00743' => 'egut', 'Migut.L00744' => 'egut', 'Migut.L00746' => 'egut', 'Migut.L00798' => 'egut', 'Migut.L00799' => 'egut', 'Migut.N02096' => 'egut', 'MSTRG.11259' => 'ama', 'MSTRG.23142' => 'ama', 'MSTRG.2499' => 'ama', 'Nitab4.5_0000003g0730' => 'nta', 'Nitab4.5_0000137g0020' => 'nta', 'Nitab4.5_0000721g0210' => 'nta', 'Nitab4.5_0000723g0050' => 'nta', 'Nitab4.5_0000913g0070' => 'nta', 'Nitab4.5_0001332g0040' => 'nta', 'Nitab4.5_0001771g0050' => 'nta', 'Nitab4.5_0001918g0050' => 'nta', 'Nitab4.5_0002686g0030' => 'nta', 'Nitab4.5_0003156g0020' => 'nta', 'Nitab4.5_0003383g0040' => 'nta', 'Nitab4.5_0003918g0010' => 'nta', 'Nitab4.5_0006760g0010' => 'nta', 'Nn1g05981' => 'nnu', 'Nn1g06288' => 'nnu', 'Nn3g16371' => 'nnu', 'Nn3g16786' => 'nnu', 'Nn4g22232' => 'nnu', 'Oeu005144.1' => 'oeu', 'Oeu005145.1' => 'oeu', 'Oeu011348.1' => 'oeu', 'Oeu016415.1' => 'oeu', 'Oeu023501.1' => 'oeu', 'Oeu044473.1' => 'oeu', 'Oeu048892.2' => 'oeu', 'Os01g0549200' => 'osa', 'Os02g0469300' => 'osa', 'Os04g0311100' => 'osa', 'Os06g0474900' => 'osa', 'Os10g0181700' => 'osa', 'Os11g0454800' => 'osa', 'Peaxi162Scf00037g00714' => 'pax', 'Peaxi162Scf00084g01217' => 'pax', 'Peaxi162Scf00257g00217' => 'pax', 'Peaxi162Scf00516g00215' => 'pax', 'Peaxi162Scf00689g00123' => 'pax', 'PGR044G2719' => 'pgr', 'PGR083G1360' => 'pgr', 'PGR102G2849' => 'pgr', 'PGR119G2534' => 'pgr', 'PGSC0003DMG400003538' => 'stu', 'PGSC0003DMG400028138' => 'stu', 'PGSC0003DMG400031732' => 'stu', 'PGSC0003DMG400038165' => 'stu', 'Phvul.002G284600' => 'pvu', 'Phvul.003G258200' => 'pvu', 'Phvul.009G176500' => 'pvu', 'Potri.003G167201' => 'ptr', 'Potri.005G118400' => 'ptr', 'Potri.012G089000' => 'ptr', 'Potri.012G102800' => 'ptr', 'Potri.015G079400' => 'ptr', 'Potri.015G100900' => 'ptr', 'Pp3c14_9810' => 'ppa', 'Pp3c15_10450' => 'ppa', 'Pp3c20_19150' => 'ppa', 'Pp3c23_12740' => 'ppa', 'Pp3c23_6310' => 'ppa', 'Pp3c24_3720' => 'ppa', 'Pp3c27_2580' => 'ppa', 'Pp3c9_8990' => 'ppa', 'PRCOL_00002854' => 'pco', 'Prupe.1G221200' => 'ppe', 'Prupe.3G289000' => 'ppe', 'Prupe.5G147000' => 'ppe', 'Prupe.6G157300' => 'ppe', 'Prupe.7G163400' => 'ppe', 'Psat0s2177g0040' => 'psa', 'Psat3g174760' => 'psa', 'Psat3g192160' => 'psa', 'Psat4g058520' => 'psa', 'Psat4g096840' => 'psa', 'Psat7g037320' => 'psa', 'PSO017G1274' => 'pso', 'PSO017G5166' => 'pso', 'PSO063G4558' => 'pso', 'PSO170G4458' => 'pso', 'PSO170G5005' => 'pso', 'PSO210G6156' => 'pso', 'PSO210G6635' => 'pso', 'PSO210G7397' => 'pso', 'PSO210G7700' => 'pso', 'PSO455G0035' => 'pso', 'PSO455G0180' => 'pso', 'PSO478G4515' => 'pso', 'PSO832G1305' => 'pso', 'PSO832G3489' => 'pso', 'QL02p075247' => 'qlo', 'QL03p051148' => 'qlo', 'QL05p010313' => 'qlo', 'QL06p034627' => 'qlo', 'QL10p001889' => 'qlo', 'QL10p010846' => 'qlo', 'RcHm_v2.0_Chr1g0350621' => 'rch', 'RcHm_v2.0_Chr1g0350641' => 'rch', 'RcHm_v2.0_Chr2g0092891' => 'rch', 'RcHm_v2.0_Chr2g0100251' => 'rch', 'RcHm_v2.0_Chr2g0158661' => 'rch', 'RcHm_v2.0_Chr2g0172741' => 'rch', 'RcHm_v2.0_Chr4g0429571' => 'rch', 'RcHm_v2.0_Chr5g0042471' => 'rch', 'RcHm_v2.0_Chr7g0189451' => 'rch', 'Rhsim08G0052000' => 'rsi', 'Rhsim08G0174400' => 'rsi', 'Rhsim08G0193200' => 'rsi', 'Rhsim10G0214800' => 'rsi', 'Rhsim10G0214900' => 'rsi', 'Rhsim10G0215000' => 'rsi', 'Rhsim12G0022900' => 'rsi', 'Rhsim12G0177500' => 'rsi', 'Rhsim12G0177700' => 'rsi', 'Sabra03G0122600' => 'sbr', 'Sabra05G0097400' => 'sbr', 'Sabra12G0064100' => 'sbr', 'Sabra15G0121300' => 'sbr', 'SalBow2G0642' => 'sbo', 'SalBow5G2667' => 'sbo', 'SalBow5G4873' => 'sbo', 'SalBow8G2395' => 'sbo', 'Sc03g0003290' => 'sci', 'Sc10g0010130' => 'sci', 'Sc22g0003650' => 'sci', 'Sed0001603' => 'sed', 'Sed0004259' => 'sed', 'Sed0006789' => 'sed', 'Sed0011838' => 'sed', 'Sed0012964' => 'sed', 'Sed0016383' => 'sed', 'Sed0019010' => 'sed', 'Sed0020188' => 'sed', 'SEGI_04702' => 'sgi', 'SEGI_17231' => 'sgi', 'SEGI_18877' => 'sgi', 'SEGI_25196' => 'sgi', 'SEGI_25515' => 'sgi', 'SEGI_28445' => 'sgi', 'SEGI_37452' => 'sgi', 'SGA_v2.0_scaffold188G40336' => 'sas', 'SGA_v2.0_scaffold228G43247' => 'sas', 'SGA_v2.0_scaffold280G46853' => 'sas', 'SGA_v2.0_scaffold34G13808' => 'sas', 'SGA_v2.0_scaffold40G15576' => 'sas', 'SGA_v2.0_scaffold611G53188' => 'sas', 'SGA_v2.0_scaffold78G25461' => 'sas', 'SGA_v2.0_scaffold90G27888' => 'sas', 'SHI08601' => 'shi', 'SHI08606' => 'shi', 'SHI17117' => 'shi', 'SHI17119' => 'shi', 'SMO118G0201' => 'smo', 'SMO169G0247' => 'smo', 'SMO176G0006' => 'smo', 'SMO176G0015' => 'smo', 'SMO202G0006' => 'smo', 'SMO240G0050' => 'smo', 'SMO286G0009' => 'smo', 'SMO338G0033' => 'smo', 'SMO356G0533' => 'smo', 'SMO364G0382' => 'smo', 'SMO367G0166' => 'smo', 'SMO367G1098' => 'smo', 'Solyc01g009920.3' => 'sly', 'Solyc01g099300.3' => 'sly', 'Solyc02g084700.3' => 'sly', 'Solyc03g097520.3' => 'sly', 'Solyc06g071580.3' => 'sly', 'Solyc10g081760.3' => 'sly', 'Sopen01g005480' => 'spe', 'Sopen01g042850' => 'spe', 'Sopen02g029370' => 'spe', 'Sopen03g028280' => 'spe', 'Sopen06g027870' => 'spe', 'Sopen10g032270' => 'spe', 'Sp5g18180' => 'spa', 'Sp6g12880' => 'spa', 'Sp6g30850' => 'spa', 'Sp7g22960' => 'spa', 'Sp7g34010' => 'spa', 'SpUn1326_0010' => 'spa', 'TAR371G0242' => 'tar', 'TAR622G0638' => 'tar', 'TAR628G1548' => 'tar', 'TAR629G1079' => 'tar', 'TAR629G3413' => 'tar', 'THA.LOC104804249' => 'tha', 'THA.LOC104808315' => 'tha', 'THA.LOC104809238' => 'tha', 'THA.LOC104825484' => 'tha', 'Thecc.01G025500' => 'tca', 'Thecc.03G015800' => 'tca', 'Thecc.03G018000' => 'tca', 'Thecc.03G134800' => 'tca', 'Thecc.04G014700' => 'tca', 'Thhalv10006991m.g' => 'esa', 'Thhalv10012707m.g' => 'esa', 'Thhalv10015739m.g' => 'esa', 'Thhalv10024553m.g' => 'esa', 'Thhalv10024673m.g' => 'esa', 'Thhalv10029187m.g' => 'esa', 'TPR.G12971' => 'tpr', 'TPR.G29396' => 'tpr', 'TPR.G33376' => 'tpr', 'TPR.G35508' => 'tpr', 'TPR.G35516' => 'tpr', 'TPR.G37317' => 'tpr', 'TPR.G37389' => 'tpr', 'TPR.G37523' => 'tpr', 'TPR.G559' => 'tpr', 'TWI14G0070' => 'twi', 'TWI14G0729' => 'twi', 'TWI18G0596' => 'twi', 'TWI39G0780' => 'twi', 'TWI39G0850' => 'twi', 'TWI73G1052' => 'twi', 'unitig_52.g17485' => 'ugi', 'unitig_61.g26355' => 'ugi', 'vmacro01040' => 'vma', 'vmacro16731' => 'vma', 'vmacro18270' => 'vma', 'vmacro19142' => 'vma', 'vmacro19407' => 'vma', 'vmacro19408' => 'vma', 'vmacro21899' => 'vma', 'vmacro21900' => 'vma', 'vmacro21901' => 'vma', 'VMungo0251G0490' => 'vmu', 'VMungo0251G1748' => 'vmu', 'VMungo1309G0421' => 'vmu', 'Zm00001eb086500' => 'zma', 'Zm00001eb150680' => 'zma', 'Zm00001eb162330' => 'zma', 'Zm00001eb203130' => 'zma', 'Zm00001eb369480' => 'zma', 'Zm00001eb382340' => 'zma', 'Zm00001eb416360' => 'zma' ) $gf_id = 'HOM05D000902' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000902' ) $data_identifier = 'HOM05D000902' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 13, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 10, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 6, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 9, 'hma' => (int) 12, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 4, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 6, 'ppa' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 6, 'rch' => (int) 9, 'rsi' => (int) 9, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 12, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 3, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416360' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000902', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '663', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02470' => 'bna', 'A01p16260' => 'bna', 'A02p01680' => 'bna', 'A03p16600' => 'bna', 'A03p55660' => 'bna', 'A03p64160' => 'bna', 'A03p64170' => 'bna', 'A08p31900' => 'bna', 'A09p59530' => 'bna', 'A10p08230' => 'bna', 'A10p25090' => 'bna', 'Aa31LG3G7100' => 'aar', 'Aa31LG3G7110' => 'aar', 'Aa31LG6G13160' => 'aar', 'Aa31LG7G10770' => 'aar', 'Aa31LG7G3830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2723' => 'aag', 'Actinidia08045' => 'ach', 'Actinidia08888' => 'ach', 'Actinidia18333' => 'ach', 'Actinidia19334' => 'ach', 'Actinidia25552' => 'ach', 'Actinidia26089' => 'ach', 'Actinidia30615' => 'ach', 'Actinidia30616' => 'ach', 'Actinidia33083' => 'ach', 'Actinidia35762' => 'ach', 'Ah.02g110620' => 'amhyb', 'Ah.11g046390' => 'amhyb', 'AL1G31670' => 'aly', 'AL6G23730' => 'aly', 'AL7G14740' => 'aly', 'AL7G14750' => 'aly', 'AL7G14760' => 'aly', 'AL7G28220' => 'aly', 'AL8G24940' => 'aly', 'Aqoxy3G01665' => 'aox', 'Aqoxy3G02853' => 'aox', 'Aqoxy5G01513' => 'aox', 'Aqoxy5G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8SKA4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ75LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKDA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0LJZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7REX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZP4YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWX7I5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2QKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS0L9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPCD8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q161UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC7XCF' => 'arhy', 'AT1G19100' => 'ath', 'AT4G24970' => 'ath', 'AT4G36270' => 'ath', 'AT4G36280' => 'ath', 'AT4G36290' => 'ath', 'AT5G13130' => 'ath', 'AT5G50780' => 'ath', 'ATR0582G266' => 'atr', 'ATR0661G195' => 'atr', 'ATR1152G031' => 'atr', 'Atru.chr11.2382' => 'acertr', 'Atru.chr12.2337' => 'acertr', 'Atru.chr3.744' => 'acertr', 'Atru.chr6.1870' => 'acertr', 'Atru.chr9.2515' => 'acertr', 'AUR62004120' => 'cqu', 'AUR62005667' => 'cqu', 'AUR62007634' => 'cqu', 'AUR62008186' => 'cqu', 'AUR62008187' => 'cqu', 'AUR62008188' => 'cqu', 'AUR62027954' => 'cqu', 'AUR62028766' => 'cqu', 'AUR62028767' => 'cqu', 'AUR62028768' => 'cqu', 'AUR62028886' => 'cqu', 'AUR62029563' => 'cqu', 'AUR62038832' => 'cqu', 'BcaB01g04149' => 'bca', 'BcaB03g12940' => 'bca', 'BcaB03g13090' => 'bca', 'BcaB03g14466' => 'bca', 'BcaB05g24035' => 'bca', 'BcaC01g06050' => 'bca', 'BcaC04g19148' => 'bca', 'BcaC04g20761' => 'bca', 'BcaC06g32845' => 'bca', 'BcaC07g41274' => 'bca', 'BcaC09g50827' => 'bca', 'BcaNung00741' => 'bca', 'BcaNung00742' => 'bca', 'BcaNung01859' => 'bca', 'BcaNung03985' => 'bca', 'BcaNung03989' => 'bca', 'BcaNung05661' => 'bca', 'BolC1t00257H' => 'bol', 'BolC1t01956H' => 'bol', 'BolC2t06534H' => 'bol', 'BolC3t14334H' => 'bol', 'BolC5t30451H' => 'bol', 'BolC7t45880H' => 'bol', 'BolC7t46586H' => 'bol', 'BolC8t49301H' => 'bol', 'BolC8t51837H' => 'bol', 'BolC9t56822H' => 'bol', 'BolC9t59235H' => 'bol', 'BraA01t00234Z' => 'bra', 'BraA01t01563Z' => 'bra', 'BraA02t05147Z' => 'bra', 'BraA03t10947Z' => 'bra', 'BraA03t14633Z' => 'bra', 'BraA08t35112Z' => 'bra', 'BraA09t41330Z' => 'bra', 'BraA10t44570Z' => 'bra', 'C01p02670' => 'bna', 'C01p20260' => 'bna', 'C02p05890' => 'bna', 'C03p19530' => 'bna', 'C05p17470' => 'bna', 'C07p53900' => 'bna', 'C07p61630' => 'bna', 'C08p16800' => 'bna', 'C08p42810' => 'bna', 'C09p39480' => 'bna', 'C09p63980' => 'bna', 'CAN.G1001.7' => 'can', 'CAN.G1034.55' => 'can', 'CAN.G143.7' => 'can', 'CAN.G3340.1' => 'can', 'CAN.G358.19' => 'can', 'CAN.G373.2' => 'can', 'CAN.G674.16' => 'can', 'CAN.G674.17' => 'can', 'CAN.G674.18' => 'can', 'CAN.G732.2' => 'can', 'CAN.G732.3' => 'can', 'CAN.G993.39' => 'can', 'CANSAT01G2052' => 'cansat', 'CANSAT80G0070' => 'cansat', 'CANSAT80G0483' => 'cansat', 'CANSAT80G0625' => 'cansat', 'CARHR019690' => 'chi', 'CARHR080280' => 'chi', 'CARHR152750' => 'chi', 'CARHR152760' => 'chi', 'CARHR152770' => 'chi', 'CARHR200340' => 'chi', 'CARHR232370' => 'chi', 'CARHR244670' => 'chi', 'CARHR244680' => 'chi', 'CARHR257520' => 'chi', 'Carub.0001s1872' => 'cru', 'Carub.0006s1130' => 'cru', 'Carub.0007s0396' => 'cru', 'Carub.0007s0397' => 'cru', 'Carub.0007s1608' => 'cru', 'Carub.0008s1068' => 'cru', 'Carub.0008s1077' => 'cru', 'Ca_16158_v3' => 'car', 'Ca_17571_v3' => 'car', 'Ca_21936_v3' => 'car', 'Ca_22350_v3' => 'car', 'CBR_g22445' => 'cbr', 'CBR_g26290' => 'cbr', 'Cc04_g09610' => 'ccan', 'Cc04_g12280' => 'ccan', 'Cc07_g10230' => 'ccan', 'CDE02G0093' => 'cde', 'CDE02G0701' => 'cde', 'CDE04G1050' => 'cde', 'CDE05G1833' => 'cde', 'CDE05G3058' => 'cde', 'CDE05G3380' => 'cde', 'CDE06G0536' => 'cde', 'Cfa006923' => 'cfa', 'Cfa009402' => 'cfa', 'Cfa018751' => 'cfa', 'Cfa019164' => 'cfa', 'Cfa022935' => 'cfa', 'Ciclev10019081m.g' => 'ccl', 'Ciclev10025076m.g' => 'ccl', 'Ciclev10030712m.g' => 'ccl', 'Ciclev10033760m.g' => 'ccl', 'CiPaw.05G105600' => 'cil', 'CiPaw.08G136700' => 'cil', 'CiPaw.11G003900' => 'cil', 'CiPaw.11G023700' => 'cil', 'CiPaw.12G003700' => 'cil', 'ClCG06G017100' => 'cla', 'ClCG06G018110' => 'cla', 'ClCG07G008800' => 'cla', 'ClCG07G015330' => 'cla', 'COL.COLO4_13698' => 'col', 'COL.COLO4_16659' => 'col', 'COL.COLO4_21986' => 'col', 'COL.COLO4_24049' => 'col', 'COL.COLO4_29061' => 'col', 'COL.COLO4_29075' => 'col', 'COL.COLO4_30094' => 'col', 'Cpa.g.c33689' => 'cpa', 'Cpa.g.sc108.39' => 'cpa', 'Cpa.g.sc108.41' => 'cpa', 'Cpa.g.sc1163.1' => 'cpa', 'Cpa.g.sc4.155' => 'cpa', 'Cpa.g.sc6.194' => 'cpa', 'CsaV3_1G000340' => 'csa', 'CsaV3_1G001400' => 'csa', 'CsaV3_4G002220' => 'csa', 'CsaV3_4G005370' => 'csa', 'CSS0007487' => 'camsi', 'CSS0008066' => 'camsi', 'CSS0009120' => 'camsi', 'CSS0015512' => 'camsi', 'CSS0022409' => 'camsi', 'CSS0025358' => 'camsi', 'CSS0044547' => 'camsi', 'DCAR_013057' => 'dca', 'DCAR_015058' => 'dca', 'DCAR_016027' => 'dca', 'DCAR_017327' => 'dca', 'DCAR_020743' => 'dca', 'DCAR_026157' => 'dca', 'DCAR_032339' => 'dca', 'DCAR_032340' => 'dca', 'Dinv11200' => 'din', 'Dinv11201' => 'din', 'Dinv20631' => 'din', 'Dinv23182' => 'din', 'Dinv33466' => 'din', 'Dinv33583' => 'din', 'Dinv38565' => 'din', 'Duzib068G0200' => 'dzi', 'Duzib147G0132' => 'dzi', 'Duzib147G0635' => 'dzi', 'Duzib205G1670' => 'dzi', 'Duzib251G0606' => 'dzi', 'ECA232G3336' => 'eca', 'ECA232G3763' => 'eca', 'ECA232G4845' => 'eca', 'ECA234G1607' => 'eca', 'ECA246G0932' => 'eca', 'ECA247G0781' => 'eca', 'ECA247G1932' => 'eca', 'ECA247G2079' => 'eca', 'ECA247G3338' => 'eca', 'ECA247G4115' => 'eca', 'EL10Ac3g06552' => 'bvu', 'EL10Ac5g10721' => 'bvu', 'EL10Ac5g10722' => 'bvu', 'EL10Ac5g10723' => 'bvu', 'EL10Ac5g11361' => 'bvu', 'EL10Ac6g13553' => 'bvu', 'EL10As8g23872' => 'bvu', 'Eucgr.B00250' => 'egr', 'Eucgr.B00251' => 'egr', 'Eucgr.B03533' => 'egr', 'Eucgr.I02381' => 'egr', 'Eucgr.K02700' => 'egr', 'FAN02G0174' => 'fan', 'FAN02G3146' => 'fan', 'FAN04G1672' => 'fan', 'FAN04G2273' => 'fan', 'FAN05G2791' => 'fan', 'FAN05G4035' => 'fan', 'FAN07G0834' => 'fan', 'FAN08G1198' => 'fan', 'FAN09G4182' => 'fan', 'FAN12G0496' => 'fan', 'FAN13G1027' => 'fan', 'FAN13G2951' => 'fan', 'FAN14G0705' => 'fan', 'FAN14G0720' => 'fan', 'FAN17G0201' => 'fan', 'FAN17G2665' => 'fan', 'FAN18G1456' => 'fan', 'FAN18G1525' => 'fan', 'FAN18G3500' => 'fan', 'FAN28G2670' => 'fan', 'FvH4_1g12391' => 'fve', 'FvH4_4g23220' => 'fve', 'FvH4_5g08810' => 'fve', 'FvH4_5g28960' => 'fve', 'FvH4_6g42820' => 'fve', 'FvH4_6g51110' => 'fve', 'Glyma.02G051802' => 'gma', 'Glyma.04G185300' => 'gma', 'Glyma.05G202900' => 'gma', 'Glyma.08G010300' => 'gma', 'Glyma.16G131900' => 'gma', 'Glyma.17G087900' => 'gma', 'Gohir.A07G048600' => 'ghi', 'Gohir.A11G179000' => 'ghi', 'Gohir.A12G140900' => 'ghi', 'Gohir.A12G140950' => 'ghi', 'Gohir.A12G191700' => 'ghi', 'Gohir.A13G086300' => 'ghi', 'Gohir.D07G052900' => 'ghi', 'Gohir.D11G186600' => 'ghi', 'Gohir.D12G145575' => 'ghi', 'Gohir.D12G145650' => 'ghi', 'Gohir.D12G145725' => 'ghi', 'Gohir.D12G194050' => 'ghi', 'Gohir.D13G091800' => 'ghi', 'Gorai.001G055900' => 'gra', 'Gorai.007G198400' => 'gra', 'Gorai.008G157000' => 'gra', 'Gorai.008G157100' => 'gra', 'Gorai.008G208700' => 'gra', 'Gorai.010G138700' => 'gra', 'GSVIVG01000977001' => 'vvi', 'GSVIVG01007708001' => 'vvi', 'GSVIVG01008587001' => 'vvi', 'GSVIVG01018849001' => 'vvi', 'GSVIVG01032432001' => 'vvi', 'HanXRQChr02g0034131' => 'han', 'HanXRQChr02g0035981' => 'han', 'HanXRQChr02g0035991' => 'han', 'HanXRQChr05g0155611' => 'han', 'HanXRQChr05g0155621' => 'han', 'HanXRQChr08g0236501' => 'han', 'HanXRQChr09g0261321' => 'han', 'HanXRQChr09g0272081' => 'han', 'HanXRQChr10g0310741' => 'han', 'HanXRQChr11g0325591' => 'han', 'HanXRQChr12g0385691' => 'han', 'HanXRQChr13g0387801' => 'han', 'HanXRQChr15g0463011' => 'han', 'Haze_03826' => 'cav', 'Haze_03827' => 'cav', 'Haze_07183' => 'cav', 'Haze_07537' => 'cav', 'Haze_07539' => 'cav', 'Haze_12461' => 'cav', 'Haze_16115' => 'cav', 'Haze_16808' => 'cav', 'Haze_18531' => 'cav', 'Hma1.2p1_0046F.1_g026700' => 'hma', 'Hma1.2p1_0046F.1_g026710' => 'hma', 'Hma1.2p1_0168F.1_g074340' => 'hma', 'Hma1.2p1_0266F.1_g107030' => 'hma', 'Hma1.2p1_0266F.1_g107060' => 'hma', 'Hma1.2p1_0275F.1_g110510' => 'hma', 'Hma1.2p1_0592F.1_g185490' => 'hma', 'Hma1.2p1_0592F.1_g185500' => 'hma', 'Hma1.2p1_0592F.1_g185510' => 'hma', 'Hma1.2p1_0592F.1_g185520' => 'hma', 'Hma1.2p1_0592F.1_g185530' => 'hma', 'Hma1.2p1_0818F.1_g223450' => 'hma', 'HPP92_009708' => 'vpl', 'HPP92_009793' => 'vpl', 'HPP92_009796' => 'vpl', 'HPP92_009797' => 'vpl', 'HPP92_014940' => 'vpl', 'HPP92_014988' => 'vpl', 'Hund02463' => 'sun', 'Hund02760' => 'sun', 'Hund05071' => 'sun', 'Hund10108' => 'sun', 'Hund11204' => 'sun', 'Hund14016' => 'sun', 'Hund16464' => 'sun', 'Lalb_Chr09g0333391' => 'lal', 'Lalb_Chr11g0070461' => 'lal', 'Lalb_Chr12g0201671' => 'lal', 'Lalb_Chr13g0297161' => 'lal', 'Lj1g0002823' => 'lja', 'Lj3C1074T6' => 'lonja', 'Lj4A212T28' => 'lonja', 'Lj4g0005516' => 'lja', 'Lj4g0013705' => 'lja', 'Lj4g0027865' => 'lja', 'Lj5C92G16' => 'lonja', 'Lj5C92T12' => 'lonja', 'Lj7C596T3' => 'lonja', 'Lj9A446G59' => 'lonja', 'Lj9A482G21' => 'lonja', 'Lsat_1_v5_gn_1_28261' => 'lsa', 'Lsat_1_v5_gn_1_28281' => 'lsa', 'Lsat_1_v5_gn_1_32721' => 'lsa', 'Lsat_1_v5_gn_4_151760' => 'lsa', 'Lsat_1_v5_gn_4_2120' => 'lsa', 'Lsat_1_v5_gn_4_75761' => 'lsa', 'Lsat_1_v5_gn_5_10920' => 'lsa', 'Manes.02G099900' => 'mes', 'Manes.11G096200' => 'mes', 'Manes.12G007200' => 'mes', 'Manes.14G048300' => 'mes', 'Manes.17G114700' => 'mes', 'Mapoly0002s0070' => 'mpo', 'Mapoly0029s0099' => 'mpo', 'MBI07_g24742_MAGBIO' => 'mbi', 'MBI10_g27988_MAGBIO' => 'mbi', 'MBI11_g13057_MAGBIO' => 'mbi', 'MD02G1137200' => 'mdo', 'MD06G1137200' => 'mdo', 'MD07G1122300' => 'mdo', 'MD09G1078200' => 'mdo', 'MD13G1123700' => 'mdo', 'MD14G1151900' => 'mdo', 'MD17G1030900' => 'mdo', 'MD17G1068200' => 'mdo', 'MD17G1068600' => 'mdo', 'Medtr3g077540' => 'mtr', 'Medtr4g105530' => 'mtr', 'Medtr8g076580' => 'mtr', 'Medtr8g076590' => 'mtr', 'Medtr8g096410' => 'mtr', 'MELO3C016411.2' => 'cme', 'MELO3C017780.2' => 'cme', 'MELO3C022560.2' => 'cme', 'MELO3C026187.2' => 'cme', 'MELO3C026286.2' => 'cme', 'MELO3C032854.2' => 'cme', 'Migut.H02495' => 'egut', 'Migut.I00561' => 'egut', 'Migut.K01015' => 'egut', 'Migut.K01016' => 'egut', 'Migut.L00743' => 'egut', 'Migut.L00744' => 'egut', 'Migut.L00746' => 'egut', 'Migut.L00798' => 'egut', 'Migut.L00799' => 'egut', 'Migut.N02096' => 'egut', 'MSTRG.11259' => 'ama', 'MSTRG.23142' => 'ama', 'MSTRG.2499' => 'ama', 'Nitab4.5_0000003g0730' => 'nta', 'Nitab4.5_0000137g0020' => 'nta', 'Nitab4.5_0000721g0210' => 'nta', 'Nitab4.5_0000723g0050' => 'nta', 'Nitab4.5_0000913g0070' => 'nta', 'Nitab4.5_0001332g0040' => 'nta', 'Nitab4.5_0001771g0050' => 'nta', 'Nitab4.5_0001918g0050' => 'nta', 'Nitab4.5_0002686g0030' => 'nta', 'Nitab4.5_0003156g0020' => 'nta', 'Nitab4.5_0003383g0040' => 'nta', 'Nitab4.5_0003918g0010' => 'nta', 'Nitab4.5_0006760g0010' => 'nta', 'Nn1g05981' => 'nnu', 'Nn1g06288' => 'nnu', 'Nn3g16371' => 'nnu', 'Nn3g16786' => 'nnu', 'Nn4g22232' => 'nnu', 'Oeu005144.1' => 'oeu', 'Oeu005145.1' => 'oeu', 'Oeu011348.1' => 'oeu', 'Oeu016415.1' => 'oeu', 'Oeu023501.1' => 'oeu', 'Oeu044473.1' => 'oeu', 'Oeu048892.2' => 'oeu', 'Os01g0549200' => 'osa', 'Os02g0469300' => 'osa', 'Os04g0311100' => 'osa', 'Os06g0474900' => 'osa', 'Os10g0181700' => 'osa', 'Os11g0454800' => 'osa', 'Peaxi162Scf00037g00714' => 'pax', 'Peaxi162Scf00084g01217' => 'pax', 'Peaxi162Scf00257g00217' => 'pax', 'Peaxi162Scf00516g00215' => 'pax', 'Peaxi162Scf00689g00123' => 'pax', 'PGR044G2719' => 'pgr', 'PGR083G1360' => 'pgr', 'PGR102G2849' => 'pgr', 'PGR119G2534' => 'pgr', 'PGSC0003DMG400003538' => 'stu', 'PGSC0003DMG400028138' => 'stu', 'PGSC0003DMG400031732' => 'stu', 'PGSC0003DMG400038165' => 'stu', 'Phvul.002G284600' => 'pvu', 'Phvul.003G258200' => 'pvu', 'Phvul.009G176500' => 'pvu', 'Potri.003G167201' => 'ptr', 'Potri.005G118400' => 'ptr', 'Potri.012G089000' => 'ptr', 'Potri.012G102800' => 'ptr', 'Potri.015G079400' => 'ptr', 'Potri.015G100900' => 'ptr', 'Pp3c14_9810' => 'ppa', 'Pp3c15_10450' => 'ppa', 'Pp3c20_19150' => 'ppa', 'Pp3c23_12740' => 'ppa', 'Pp3c23_6310' => 'ppa', 'Pp3c24_3720' => 'ppa', 'Pp3c27_2580' => 'ppa', 'Pp3c9_8990' => 'ppa', 'PRCOL_00002854' => 'pco', 'Prupe.1G221200' => 'ppe', 'Prupe.3G289000' => 'ppe', 'Prupe.5G147000' => 'ppe', 'Prupe.6G157300' => 'ppe', 'Prupe.7G163400' => 'ppe', 'Psat0s2177g0040' => 'psa', 'Psat3g174760' => 'psa', 'Psat3g192160' => 'psa', 'Psat4g058520' => 'psa', 'Psat4g096840' => 'psa', 'Psat7g037320' => 'psa', 'PSO017G1274' => 'pso', 'PSO017G5166' => 'pso', 'PSO063G4558' => 'pso', 'PSO170G4458' => 'pso', 'PSO170G5005' => 'pso', 'PSO210G6156' => 'pso', 'PSO210G6635' => 'pso', 'PSO210G7397' => 'pso', 'PSO210G7700' => 'pso', 'PSO455G0035' => 'pso', 'PSO455G0180' => 'pso', 'PSO478G4515' => 'pso', 'PSO832G1305' => 'pso', 'PSO832G3489' => 'pso', 'QL02p075247' => 'qlo', 'QL03p051148' => 'qlo', 'QL05p010313' => 'qlo', 'QL06p034627' => 'qlo', 'QL10p001889' => 'qlo', 'QL10p010846' => 'qlo', 'RcHm_v2.0_Chr1g0350621' => 'rch', 'RcHm_v2.0_Chr1g0350641' => 'rch', 'RcHm_v2.0_Chr2g0092891' => 'rch', 'RcHm_v2.0_Chr2g0100251' => 'rch', 'RcHm_v2.0_Chr2g0158661' => 'rch', 'RcHm_v2.0_Chr2g0172741' => 'rch', 'RcHm_v2.0_Chr4g0429571' => 'rch', 'RcHm_v2.0_Chr5g0042471' => 'rch', 'RcHm_v2.0_Chr7g0189451' => 'rch', 'Rhsim08G0052000' => 'rsi', 'Rhsim08G0174400' => 'rsi', 'Rhsim08G0193200' => 'rsi', 'Rhsim10G0214800' => 'rsi', 'Rhsim10G0214900' => 'rsi', 'Rhsim10G0215000' => 'rsi', 'Rhsim12G0022900' => 'rsi', 'Rhsim12G0177500' => 'rsi', 'Rhsim12G0177700' => 'rsi', 'Sabra03G0122600' => 'sbr', 'Sabra05G0097400' => 'sbr', 'Sabra12G0064100' => 'sbr', 'Sabra15G0121300' => 'sbr', 'SalBow2G0642' => 'sbo', 'SalBow5G2667' => 'sbo', 'SalBow5G4873' => 'sbo', 'SalBow8G2395' => 'sbo', 'Sc03g0003290' => 'sci', 'Sc10g0010130' => 'sci', 'Sc22g0003650' => 'sci', 'Sed0001603' => 'sed', 'Sed0004259' => 'sed', 'Sed0006789' => 'sed', 'Sed0011838' => 'sed', 'Sed0012964' => 'sed', 'Sed0016383' => 'sed', 'Sed0019010' => 'sed', 'Sed0020188' => 'sed', 'SEGI_04702' => 'sgi', 'SEGI_17231' => 'sgi', 'SEGI_18877' => 'sgi', 'SEGI_25196' => 'sgi', 'SEGI_25515' => 'sgi', 'SEGI_28445' => 'sgi', 'SEGI_37452' => 'sgi', 'SGA_v2.0_scaffold188G40336' => 'sas', 'SGA_v2.0_scaffold228G43247' => 'sas', 'SGA_v2.0_scaffold280G46853' => 'sas', 'SGA_v2.0_scaffold34G13808' => 'sas', 'SGA_v2.0_scaffold40G15576' => 'sas', 'SGA_v2.0_scaffold611G53188' => 'sas', 'SGA_v2.0_scaffold78G25461' => 'sas', 'SGA_v2.0_scaffold90G27888' => 'sas', 'SHI08601' => 'shi', 'SHI08606' => 'shi', 'SHI17117' => 'shi', 'SHI17119' => 'shi', 'SMO118G0201' => 'smo', 'SMO169G0247' => 'smo', 'SMO176G0006' => 'smo', 'SMO176G0015' => 'smo', 'SMO202G0006' => 'smo', 'SMO240G0050' => 'smo', 'SMO286G0009' => 'smo', 'SMO338G0033' => 'smo', 'SMO356G0533' => 'smo', 'SMO364G0382' => 'smo', 'SMO367G0166' => 'smo', 'SMO367G1098' => 'smo', 'Solyc01g009920.3' => 'sly', 'Solyc01g099300.3' => 'sly', 'Solyc02g084700.3' => 'sly', 'Solyc03g097520.3' => 'sly', 'Solyc06g071580.3' => 'sly', 'Solyc10g081760.3' => 'sly', 'Sopen01g005480' => 'spe', 'Sopen01g042850' => 'spe', 'Sopen02g029370' => 'spe', 'Sopen03g028280' => 'spe', 'Sopen06g027870' => 'spe', 'Sopen10g032270' => 'spe', 'Sp5g18180' => 'spa', 'Sp6g12880' => 'spa', 'Sp6g30850' => 'spa', 'Sp7g22960' => 'spa', 'Sp7g34010' => 'spa', 'SpUn1326_0010' => 'spa', 'TAR371G0242' => 'tar', 'TAR622G0638' => 'tar', 'TAR628G1548' => 'tar', 'TAR629G1079' => 'tar', 'TAR629G3413' => 'tar', 'THA.LOC104804249' => 'tha', 'THA.LOC104808315' => 'tha', 'THA.LOC104809238' => 'tha', 'THA.LOC104825484' => 'tha', 'Thecc.01G025500' => 'tca', 'Thecc.03G015800' => 'tca', 'Thecc.03G018000' => 'tca', 'Thecc.03G134800' => 'tca', 'Thecc.04G014700' => 'tca', 'Thhalv10006991m.g' => 'esa', 'Thhalv10012707m.g' => 'esa', 'Thhalv10015739m.g' => 'esa', 'Thhalv10024553m.g' => 'esa', 'Thhalv10024673m.g' => 'esa', 'Thhalv10029187m.g' => 'esa', 'TPR.G12971' => 'tpr', 'TPR.G29396' => 'tpr', 'TPR.G33376' => 'tpr', 'TPR.G35508' => 'tpr', 'TPR.G35516' => 'tpr', 'TPR.G37317' => 'tpr', 'TPR.G37389' => 'tpr', 'TPR.G37523' => 'tpr', 'TPR.G559' => 'tpr', 'TWI14G0070' => 'twi', 'TWI14G0729' => 'twi', 'TWI18G0596' => 'twi', 'TWI39G0780' => 'twi', 'TWI39G0850' => 'twi', 'TWI73G1052' => 'twi', 'unitig_52.g17485' => 'ugi', 'unitig_61.g26355' => 'ugi', 'vmacro01040' => 'vma', 'vmacro16731' => 'vma', 'vmacro18270' => 'vma', 'vmacro19142' => 'vma', 'vmacro19407' => 'vma', 'vmacro19408' => 'vma', 'vmacro21899' => 'vma', 'vmacro21900' => 'vma', 'vmacro21901' => 'vma', 'VMungo0251G0490' => 'vmu', 'VMungo0251G1748' => 'vmu', 'VMungo1309G0421' => 'vmu', 'Zm00001eb086500' => 'zma', 'Zm00001eb150680' => 'zma', 'Zm00001eb162330' => 'zma', 'Zm00001eb203130' => 'zma', 'Zm00001eb369480' => 'zma', 'Zm00001eb382340' => 'zma', 'Zm00001eb416360' => 'zma' ), 'gf_id' => 'HOM05D000902', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000902' ), 'data_identifier' => 'HOM05D000902', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000902', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '663', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02470' => 'bna', 'A01p16260' => 'bna', 'A02p01680' => 'bna', 'A03p16600' => 'bna', 'A03p55660' => 'bna', 'A03p64160' => 'bna', 'A03p64170' => 'bna', 'A08p31900' => 'bna', 'A09p59530' => 'bna', 'A10p08230' => 'bna', 'A10p25090' => 'bna', 'Aa31LG3G7100' => 'aar', 'Aa31LG3G7110' => 'aar', 'Aa31LG6G13160' => 'aar', 'Aa31LG7G10770' => 'aar', 'Aa31LG7G3830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2723' => 'aag', 'Actinidia08045' => 'ach', 'Actinidia08888' => 'ach', 'Actinidia18333' => 'ach', 'Actinidia19334' => 'ach', 'Actinidia25552' => 'ach', 'Actinidia26089' => 'ach', 'Actinidia30615' => 'ach', 'Actinidia30616' => 'ach', 'Actinidia33083' => 'ach', 'Actinidia35762' => 'ach', 'Ah.02g110620' => 'amhyb', 'Ah.11g046390' => 'amhyb', 'AL1G31670' => 'aly', 'AL6G23730' => 'aly', 'AL7G14740' => 'aly', 'AL7G14750' => 'aly', 'AL7G14760' => 'aly', 'AL7G28220' => 'aly', 'AL8G24940' => 'aly', 'Aqoxy3G01665' => 'aox', 'Aqoxy3G02853' => 'aox', 'Aqoxy5G01513' => 'aox', 'Aqoxy5G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8SKA4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ75LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKDA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0LJZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7REX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZP4YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWX7I5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2QKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS0L9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPCD8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q161UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC7XCF' => 'arhy', 'AT1G19100' => 'ath', 'AT4G24970' => 'ath', 'AT4G36270' => 'ath', 'AT4G36280' => 'ath', 'AT4G36290' => 'ath', 'AT5G13130' => 'ath', 'AT5G50780' => 'ath', 'ATR0582G266' => 'atr', 'ATR0661G195' => 'atr', 'ATR1152G031' => 'atr', 'Atru.chr11.2382' => 'acertr', 'Atru.chr12.2337' => 'acertr', 'Atru.chr3.744' => 'acertr', 'Atru.chr6.1870' => 'acertr', 'Atru.chr9.2515' => 'acertr', 'AUR62004120' => 'cqu', 'AUR62005667' => 'cqu', 'AUR62007634' => 'cqu', 'AUR62008186' => 'cqu', 'AUR62008187' => 'cqu', 'AUR62008188' => 'cqu', 'AUR62027954' => 'cqu', 'AUR62028766' => 'cqu', 'AUR62028767' => 'cqu', 'AUR62028768' => 'cqu', 'AUR62028886' => 'cqu', 'AUR62029563' => 'cqu', 'AUR62038832' => 'cqu', 'BcaB01g04149' => 'bca', 'BcaB03g12940' => 'bca', 'BcaB03g13090' => 'bca', 'BcaB03g14466' => 'bca', 'BcaB05g24035' => 'bca', 'BcaC01g06050' => 'bca', 'BcaC04g19148' => 'bca', 'BcaC04g20761' => 'bca', 'BcaC06g32845' => 'bca', 'BcaC07g41274' => 'bca', 'BcaC09g50827' => 'bca', 'BcaNung00741' => 'bca', 'BcaNung00742' => 'bca', 'BcaNung01859' => 'bca', 'BcaNung03985' => 'bca', 'BcaNung03989' => 'bca', 'BcaNung05661' => 'bca', 'BolC1t00257H' => 'bol', 'BolC1t01956H' => 'bol', 'BolC2t06534H' => 'bol', 'BolC3t14334H' => 'bol', 'BolC5t30451H' => 'bol', 'BolC7t45880H' => 'bol', 'BolC7t46586H' => 'bol', 'BolC8t49301H' => 'bol', 'BolC8t51837H' => 'bol', 'BolC9t56822H' => 'bol', 'BolC9t59235H' => 'bol', 'BraA01t00234Z' => 'bra', 'BraA01t01563Z' => 'bra', 'BraA02t05147Z' => 'bra', 'BraA03t10947Z' => 'bra', 'BraA03t14633Z' => 'bra', 'BraA08t35112Z' => 'bra', 'BraA09t41330Z' => 'bra', 'BraA10t44570Z' => 'bra', 'C01p02670' => 'bna', 'C01p20260' => 'bna', 'C02p05890' => 'bna', 'C03p19530' => 'bna', 'C05p17470' => 'bna', 'C07p53900' => 'bna', 'C07p61630' => 'bna', 'C08p16800' => 'bna', 'C08p42810' => 'bna', 'C09p39480' => 'bna', 'C09p63980' => 'bna', 'CAN.G1001.7' => 'can', 'CAN.G1034.55' => 'can', 'CAN.G143.7' => 'can', 'CAN.G3340.1' => 'can', 'CAN.G358.19' => 'can', 'CAN.G373.2' => 'can', 'CAN.G674.16' => 'can', 'CAN.G674.17' => 'can', 'CAN.G674.18' => 'can', 'CAN.G732.2' => 'can', 'CAN.G732.3' => 'can', 'CAN.G993.39' => 'can', 'CANSAT01G2052' => 'cansat', 'CANSAT80G0070' => 'cansat', 'CANSAT80G0483' => 'cansat', 'CANSAT80G0625' => 'cansat', 'CARHR019690' => 'chi', 'CARHR080280' => 'chi', 'CARHR152750' => 'chi', 'CARHR152760' => 'chi', 'CARHR152770' => 'chi', 'CARHR200340' => 'chi', 'CARHR232370' => 'chi', 'CARHR244670' => 'chi', 'CARHR244680' => 'chi', 'CARHR257520' => 'chi', 'Carub.0001s1872' => 'cru', 'Carub.0006s1130' => 'cru', 'Carub.0007s0396' => 'cru', 'Carub.0007s0397' => 'cru', 'Carub.0007s1608' => 'cru', 'Carub.0008s1068' => 'cru', 'Carub.0008s1077' => 'cru', 'Ca_16158_v3' => 'car', 'Ca_17571_v3' => 'car', 'Ca_21936_v3' => 'car', 'Ca_22350_v3' => 'car', 'CBR_g22445' => 'cbr', 'CBR_g26290' => 'cbr', 'Cc04_g09610' => 'ccan', 'Cc04_g12280' => 'ccan', 'Cc07_g10230' => 'ccan', 'CDE02G0093' => 'cde', 'CDE02G0701' => 'cde', 'CDE04G1050' => 'cde', 'CDE05G1833' => 'cde', 'CDE05G3058' => 'cde', 'CDE05G3380' => 'cde', 'CDE06G0536' => 'cde', 'Cfa006923' => 'cfa', 'Cfa009402' => 'cfa', 'Cfa018751' => 'cfa', 'Cfa019164' => 'cfa', 'Cfa022935' => 'cfa', 'Ciclev10019081m.g' => 'ccl', 'Ciclev10025076m.g' => 'ccl', 'Ciclev10030712m.g' => 'ccl', 'Ciclev10033760m.g' => 'ccl', 'CiPaw.05G105600' => 'cil', 'CiPaw.08G136700' => 'cil', 'CiPaw.11G003900' => 'cil', 'CiPaw.11G023700' => 'cil', 'CiPaw.12G003700' => 'cil', 'ClCG06G017100' => 'cla', 'ClCG06G018110' => 'cla', 'ClCG07G008800' => 'cla', 'ClCG07G015330' => 'cla', 'COL.COLO4_13698' => 'col', 'COL.COLO4_16659' => 'col', 'COL.COLO4_21986' => 'col', 'COL.COLO4_24049' => 'col', 'COL.COLO4_29061' => 'col', 'COL.COLO4_29075' => 'col', 'COL.COLO4_30094' => 'col', 'Cpa.g.c33689' => 'cpa', 'Cpa.g.sc108.39' => 'cpa', 'Cpa.g.sc108.41' => 'cpa', 'Cpa.g.sc1163.1' => 'cpa', 'Cpa.g.sc4.155' => 'cpa', 'Cpa.g.sc6.194' => 'cpa', 'CsaV3_1G000340' => 'csa', 'CsaV3_1G001400' => 'csa', 'CsaV3_4G002220' => 'csa', 'CsaV3_4G005370' => 'csa', 'CSS0007487' => 'camsi', 'CSS0008066' => 'camsi', 'CSS0009120' => 'camsi', 'CSS0015512' => 'camsi', 'CSS0022409' => 'camsi', 'CSS0025358' => 'camsi', 'CSS0044547' => 'camsi', 'DCAR_013057' => 'dca', 'DCAR_015058' => 'dca', 'DCAR_016027' => 'dca', 'DCAR_017327' => 'dca', 'DCAR_020743' => 'dca', 'DCAR_026157' => 'dca', 'DCAR_032339' => 'dca', 'DCAR_032340' => 'dca', 'Dinv11200' => 'din', 'Dinv11201' => 'din', 'Dinv20631' => 'din', 'Dinv23182' => 'din', 'Dinv33466' => 'din', 'Dinv33583' => 'din', 'Dinv38565' => 'din', 'Duzib068G0200' => 'dzi', 'Duzib147G0132' => 'dzi', 'Duzib147G0635' => 'dzi', 'Duzib205G1670' => 'dzi', 'Duzib251G0606' => 'dzi', 'ECA232G3336' => 'eca', 'ECA232G3763' => 'eca', 'ECA232G4845' => 'eca', 'ECA234G1607' => 'eca', 'ECA246G0932' => 'eca', 'ECA247G0781' => 'eca', 'ECA247G1932' => 'eca', 'ECA247G2079' => 'eca', 'ECA247G3338' => 'eca', 'ECA247G4115' => 'eca', 'EL10Ac3g06552' => 'bvu', 'EL10Ac5g10721' => 'bvu', 'EL10Ac5g10722' => 'bvu', 'EL10Ac5g10723' => 'bvu', 'EL10Ac5g11361' => 'bvu', 'EL10Ac6g13553' => 'bvu', 'EL10As8g23872' => 'bvu', 'Eucgr.B00250' => 'egr', 'Eucgr.B00251' => 'egr', 'Eucgr.B03533' => 'egr', 'Eucgr.I02381' => 'egr', 'Eucgr.K02700' => 'egr', 'FAN02G0174' => 'fan', 'FAN02G3146' => 'fan', 'FAN04G1672' => 'fan', 'FAN04G2273' => 'fan', 'FAN05G2791' => 'fan', 'FAN05G4035' => 'fan', 'FAN07G0834' => 'fan', 'FAN08G1198' => 'fan', 'FAN09G4182' => 'fan', 'FAN12G0496' => 'fan', 'FAN13G1027' => 'fan', 'FAN13G2951' => 'fan', 'FAN14G0705' => 'fan', 'FAN14G0720' => 'fan', 'FAN17G0201' => 'fan', 'FAN17G2665' => 'fan', 'FAN18G1456' => 'fan', 'FAN18G1525' => 'fan', 'FAN18G3500' => 'fan', 'FAN28G2670' => 'fan', 'FvH4_1g12391' => 'fve', 'FvH4_4g23220' => 'fve', 'FvH4_5g08810' => 'fve', 'FvH4_5g28960' => 'fve', 'FvH4_6g42820' => 'fve', 'FvH4_6g51110' => 'fve', 'Glyma.02G051802' => 'gma', 'Glyma.04G185300' => 'gma', 'Glyma.05G202900' => 'gma', 'Glyma.08G010300' => 'gma', 'Glyma.16G131900' => 'gma', 'Glyma.17G087900' => 'gma', 'Gohir.A07G048600' => 'ghi', 'Gohir.A11G179000' => 'ghi', 'Gohir.A12G140900' => 'ghi', 'Gohir.A12G140950' => 'ghi', 'Gohir.A12G191700' => 'ghi', 'Gohir.A13G086300' => 'ghi', 'Gohir.D07G052900' => 'ghi', 'Gohir.D11G186600' => 'ghi', 'Gohir.D12G145575' => 'ghi', 'Gohir.D12G145650' => 'ghi', 'Gohir.D12G145725' => 'ghi', 'Gohir.D12G194050' => 'ghi', 'Gohir.D13G091800' => 'ghi', 'Gorai.001G055900' => 'gra', 'Gorai.007G198400' => 'gra', 'Gorai.008G157000' => 'gra', 'Gorai.008G157100' => 'gra', 'Gorai.008G208700' => 'gra', 'Gorai.010G138700' => 'gra', 'GSVIVG01000977001' => 'vvi', 'GSVIVG01007708001' => 'vvi', 'GSVIVG01008587001' => 'vvi', 'GSVIVG01018849001' => 'vvi', 'GSVIVG01032432001' => 'vvi', 'HanXRQChr02g0034131' => 'han', 'HanXRQChr02g0035981' => 'han', 'HanXRQChr02g0035991' => 'han', 'HanXRQChr05g0155611' => 'han', 'HanXRQChr05g0155621' => 'han', 'HanXRQChr08g0236501' => 'han', 'HanXRQChr09g0261321' => 'han', 'HanXRQChr09g0272081' => 'han', 'HanXRQChr10g0310741' => 'han', 'HanXRQChr11g0325591' => 'han', 'HanXRQChr12g0385691' => 'han', 'HanXRQChr13g0387801' => 'han', 'HanXRQChr15g0463011' => 'han', 'Haze_03826' => 'cav', 'Haze_03827' => 'cav', 'Haze_07183' => 'cav', 'Haze_07537' => 'cav', 'Haze_07539' => 'cav', 'Haze_12461' => 'cav', 'Haze_16115' => 'cav', 'Haze_16808' => 'cav', 'Haze_18531' => 'cav', 'Hma1.2p1_0046F.1_g026700' => 'hma', 'Hma1.2p1_0046F.1_g026710' => 'hma', 'Hma1.2p1_0168F.1_g074340' => 'hma', 'Hma1.2p1_0266F.1_g107030' => 'hma', 'Hma1.2p1_0266F.1_g107060' => 'hma', 'Hma1.2p1_0275F.1_g110510' => 'hma', 'Hma1.2p1_0592F.1_g185490' => 'hma', 'Hma1.2p1_0592F.1_g185500' => 'hma', 'Hma1.2p1_0592F.1_g185510' => 'hma', 'Hma1.2p1_0592F.1_g185520' => 'hma', 'Hma1.2p1_0592F.1_g185530' => 'hma', 'Hma1.2p1_0818F.1_g223450' => 'hma', 'HPP92_009708' => 'vpl', 'HPP92_009793' => 'vpl', 'HPP92_009796' => 'vpl', 'HPP92_009797' => 'vpl', 'HPP92_014940' => 'vpl', 'HPP92_014988' => 'vpl', 'Hund02463' => 'sun', 'Hund02760' => 'sun', 'Hund05071' => 'sun', 'Hund10108' => 'sun', 'Hund11204' => 'sun', 'Hund14016' => 'sun', 'Hund16464' => 'sun', 'Lalb_Chr09g0333391' => 'lal', 'Lalb_Chr11g0070461' => 'lal', 'Lalb_Chr12g0201671' => 'lal', 'Lalb_Chr13g0297161' => 'lal', 'Lj1g0002823' => 'lja', 'Lj3C1074T6' => 'lonja', 'Lj4A212T28' => 'lonja', 'Lj4g0005516' => 'lja', 'Lj4g0013705' => 'lja', 'Lj4g0027865' => 'lja', 'Lj5C92G16' => 'lonja', 'Lj5C92T12' => 'lonja', 'Lj7C596T3' => 'lonja', 'Lj9A446G59' => 'lonja', 'Lj9A482G21' => 'lonja', 'Lsat_1_v5_gn_1_28261' => 'lsa', 'Lsat_1_v5_gn_1_28281' => 'lsa', 'Lsat_1_v5_gn_1_32721' => 'lsa', 'Lsat_1_v5_gn_4_151760' => 'lsa', 'Lsat_1_v5_gn_4_2120' => 'lsa', 'Lsat_1_v5_gn_4_75761' => 'lsa', 'Lsat_1_v5_gn_5_10920' => 'lsa', 'Manes.02G099900' => 'mes', 'Manes.11G096200' => 'mes', 'Manes.12G007200' => 'mes', 'Manes.14G048300' => 'mes', 'Manes.17G114700' => 'mes', 'Mapoly0002s0070' => 'mpo', 'Mapoly0029s0099' => 'mpo', 'MBI07_g24742_MAGBIO' => 'mbi', 'MBI10_g27988_MAGBIO' => 'mbi', 'MBI11_g13057_MAGBIO' => 'mbi', 'MD02G1137200' => 'mdo', 'MD06G1137200' => 'mdo', 'MD07G1122300' => 'mdo', 'MD09G1078200' => 'mdo', 'MD13G1123700' => 'mdo', 'MD14G1151900' => 'mdo', 'MD17G1030900' => 'mdo', 'MD17G1068200' => 'mdo', 'MD17G1068600' => 'mdo', 'Medtr3g077540' => 'mtr', 'Medtr4g105530' => 'mtr', 'Medtr8g076580' => 'mtr', 'Medtr8g076590' => 'mtr', 'Medtr8g096410' => 'mtr', 'MELO3C016411.2' => 'cme', 'MELO3C017780.2' => 'cme', 'MELO3C022560.2' => 'cme', 'MELO3C026187.2' => 'cme', 'MELO3C026286.2' => 'cme', 'MELO3C032854.2' => 'cme', 'Migut.H02495' => 'egut', 'Migut.I00561' => 'egut', 'Migut.K01015' => 'egut', 'Migut.K01016' => 'egut', 'Migut.L00743' => 'egut', 'Migut.L00744' => 'egut', 'Migut.L00746' => 'egut', 'Migut.L00798' => 'egut', 'Migut.L00799' => 'egut', 'Migut.N02096' => 'egut', 'MSTRG.11259' => 'ama', 'MSTRG.23142' => 'ama', 'MSTRG.2499' => 'ama', 'Nitab4.5_0000003g0730' => 'nta', 'Nitab4.5_0000137g0020' => 'nta', 'Nitab4.5_0000721g0210' => 'nta', 'Nitab4.5_0000723g0050' => 'nta', 'Nitab4.5_0000913g0070' => 'nta', 'Nitab4.5_0001332g0040' => 'nta', 'Nitab4.5_0001771g0050' => 'nta', 'Nitab4.5_0001918g0050' => 'nta', 'Nitab4.5_0002686g0030' => 'nta', 'Nitab4.5_0003156g0020' => 'nta', 'Nitab4.5_0003383g0040' => 'nta', 'Nitab4.5_0003918g0010' => 'nta', 'Nitab4.5_0006760g0010' => 'nta', 'Nn1g05981' => 'nnu', 'Nn1g06288' => 'nnu', 'Nn3g16371' => 'nnu', 'Nn3g16786' => 'nnu', 'Nn4g22232' => 'nnu', 'Oeu005144.1' => 'oeu', 'Oeu005145.1' => 'oeu', 'Oeu011348.1' => 'oeu', 'Oeu016415.1' => 'oeu', 'Oeu023501.1' => 'oeu', 'Oeu044473.1' => 'oeu', 'Oeu048892.2' => 'oeu', 'Os01g0549200' => 'osa', 'Os02g0469300' => 'osa', 'Os04g0311100' => 'osa', 'Os06g0474900' => 'osa', 'Os10g0181700' => 'osa', 'Os11g0454800' => 'osa', 'Peaxi162Scf00037g00714' => 'pax', 'Peaxi162Scf00084g01217' => 'pax', 'Peaxi162Scf00257g00217' => 'pax', 'Peaxi162Scf00516g00215' => 'pax', 'Peaxi162Scf00689g00123' => 'pax', 'PGR044G2719' => 'pgr', 'PGR083G1360' => 'pgr', 'PGR102G2849' => 'pgr', 'PGR119G2534' => 'pgr', 'PGSC0003DMG400003538' => 'stu', 'PGSC0003DMG400028138' => 'stu', 'PGSC0003DMG400031732' => 'stu', 'PGSC0003DMG400038165' => 'stu', 'Phvul.002G284600' => 'pvu', 'Phvul.003G258200' => 'pvu', 'Phvul.009G176500' => 'pvu', 'Potri.003G167201' => 'ptr', 'Potri.005G118400' => 'ptr', 'Potri.012G089000' => 'ptr', 'Potri.012G102800' => 'ptr', 'Potri.015G079400' => 'ptr', 'Potri.015G100900' => 'ptr', 'Pp3c14_9810' => 'ppa', 'Pp3c15_10450' => 'ppa', 'Pp3c20_19150' => 'ppa', 'Pp3c23_12740' => 'ppa', 'Pp3c23_6310' => 'ppa', 'Pp3c24_3720' => 'ppa', 'Pp3c27_2580' => 'ppa', 'Pp3c9_8990' => 'ppa', 'PRCOL_00002854' => 'pco', 'Prupe.1G221200' => 'ppe', 'Prupe.3G289000' => 'ppe', 'Prupe.5G147000' => 'ppe', 'Prupe.6G157300' => 'ppe', 'Prupe.7G163400' => 'ppe', 'Psat0s2177g0040' => 'psa', 'Psat3g174760' => 'psa', 'Psat3g192160' => 'psa', 'Psat4g058520' => 'psa', 'Psat4g096840' => 'psa', 'Psat7g037320' => 'psa', 'PSO017G1274' => 'pso', 'PSO017G5166' => 'pso', 'PSO063G4558' => 'pso', 'PSO170G4458' => 'pso', 'PSO170G5005' => 'pso', 'PSO210G6156' => 'pso', 'PSO210G6635' => 'pso', 'PSO210G7397' => 'pso', 'PSO210G7700' => 'pso', 'PSO455G0035' => 'pso', 'PSO455G0180' => 'pso', 'PSO478G4515' => 'pso', 'PSO832G1305' => 'pso', 'PSO832G3489' => 'pso', 'QL02p075247' => 'qlo', 'QL03p051148' => 'qlo', 'QL05p010313' => 'qlo', 'QL06p034627' => 'qlo', 'QL10p001889' => 'qlo', 'QL10p010846' => 'qlo', 'RcHm_v2.0_Chr1g0350621' => 'rch', 'RcHm_v2.0_Chr1g0350641' => 'rch', 'RcHm_v2.0_Chr2g0092891' => 'rch', 'RcHm_v2.0_Chr2g0100251' => 'rch', 'RcHm_v2.0_Chr2g0158661' => 'rch', 'RcHm_v2.0_Chr2g0172741' => 'rch', 'RcHm_v2.0_Chr4g0429571' => 'rch', 'RcHm_v2.0_Chr5g0042471' => 'rch', 'RcHm_v2.0_Chr7g0189451' => 'rch', 'Rhsim08G0052000' => 'rsi', 'Rhsim08G0174400' => 'rsi', 'Rhsim08G0193200' => 'rsi', 'Rhsim10G0214800' => 'rsi', 'Rhsim10G0214900' => 'rsi', 'Rhsim10G0215000' => 'rsi', 'Rhsim12G0022900' => 'rsi', 'Rhsim12G0177500' => 'rsi', 'Rhsim12G0177700' => 'rsi', 'Sabra03G0122600' => 'sbr', 'Sabra05G0097400' => 'sbr', 'Sabra12G0064100' => 'sbr', 'Sabra15G0121300' => 'sbr', 'SalBow2G0642' => 'sbo', 'SalBow5G2667' => 'sbo', 'SalBow5G4873' => 'sbo', 'SalBow8G2395' => 'sbo', 'Sc03g0003290' => 'sci', 'Sc10g0010130' => 'sci', 'Sc22g0003650' => 'sci', 'Sed0001603' => 'sed', 'Sed0004259' => 'sed', 'Sed0006789' => 'sed', 'Sed0011838' => 'sed', 'Sed0012964' => 'sed', 'Sed0016383' => 'sed', 'Sed0019010' => 'sed', 'Sed0020188' => 'sed', 'SEGI_04702' => 'sgi', 'SEGI_17231' => 'sgi', 'SEGI_18877' => 'sgi', 'SEGI_25196' => 'sgi', 'SEGI_25515' => 'sgi', 'SEGI_28445' => 'sgi', 'SEGI_37452' => 'sgi', 'SGA_v2.0_scaffold188G40336' => 'sas', 'SGA_v2.0_scaffold228G43247' => 'sas', 'SGA_v2.0_scaffold280G46853' => 'sas', 'SGA_v2.0_scaffold34G13808' => 'sas', 'SGA_v2.0_scaffold40G15576' => 'sas', 'SGA_v2.0_scaffold611G53188' => 'sas', 'SGA_v2.0_scaffold78G25461' => 'sas', 'SGA_v2.0_scaffold90G27888' => 'sas', 'SHI08601' => 'shi', 'SHI08606' => 'shi', 'SHI17117' => 'shi', 'SHI17119' => 'shi', 'SMO118G0201' => 'smo', 'SMO169G0247' => 'smo', 'SMO176G0006' => 'smo', 'SMO176G0015' => 'smo', 'SMO202G0006' => 'smo', 'SMO240G0050' => 'smo', 'SMO286G0009' => 'smo', 'SMO338G0033' => 'smo', 'SMO356G0533' => 'smo', 'SMO364G0382' => 'smo', 'SMO367G0166' => 'smo', 'SMO367G1098' => 'smo', 'Solyc01g009920.3' => 'sly', 'Solyc01g099300.3' => 'sly', 'Solyc02g084700.3' => 'sly', 'Solyc03g097520.3' => 'sly', 'Solyc06g071580.3' => 'sly', 'Solyc10g081760.3' => 'sly', 'Sopen01g005480' => 'spe', 'Sopen01g042850' => 'spe', 'Sopen02g029370' => 'spe', 'Sopen03g028280' => 'spe', 'Sopen06g027870' => 'spe', 'Sopen10g032270' => 'spe', 'Sp5g18180' => 'spa', 'Sp6g12880' => 'spa', 'Sp6g30850' => 'spa', 'Sp7g22960' => 'spa', 'Sp7g34010' => 'spa', 'SpUn1326_0010' => 'spa', 'TAR371G0242' => 'tar', 'TAR622G0638' => 'tar', 'TAR628G1548' => 'tar', 'TAR629G1079' => 'tar', 'TAR629G3413' => 'tar', 'THA.LOC104804249' => 'tha', 'THA.LOC104808315' => 'tha', 'THA.LOC104809238' => 'tha', 'THA.LOC104825484' => 'tha', 'Thecc.01G025500' => 'tca', 'Thecc.03G015800' => 'tca', 'Thecc.03G018000' => 'tca', 'Thecc.03G134800' => 'tca', 'Thecc.04G014700' => 'tca', 'Thhalv10006991m.g' => 'esa', 'Thhalv10012707m.g' => 'esa', 'Thhalv10015739m.g' => 'esa', 'Thhalv10024553m.g' => 'esa', 'Thhalv10024673m.g' => 'esa', 'Thhalv10029187m.g' => 'esa', 'TPR.G12971' => 'tpr', 'TPR.G29396' => 'tpr', 'TPR.G33376' => 'tpr', 'TPR.G35508' => 'tpr', 'TPR.G35516' => 'tpr', 'TPR.G37317' => 'tpr', 'TPR.G37389' => 'tpr', 'TPR.G37523' => 'tpr', 'TPR.G559' => 'tpr', 'TWI14G0070' => 'twi', 'TWI14G0729' => 'twi', 'TWI18G0596' => 'twi', 'TWI39G0780' => 'twi', 'TWI39G0850' => 'twi', 'TWI73G1052' => 'twi', 'unitig_52.g17485' => 'ugi', 'unitig_61.g26355' => 'ugi', 'vmacro01040' => 'vma', 'vmacro16731' => 'vma', 'vmacro18270' => 'vma', 'vmacro19142' => 'vma', 'vmacro19407' => 'vma', 'vmacro19408' => 'vma', 'vmacro21899' => 'vma', 'vmacro21900' => 'vma', 'vmacro21901' => 'vma', 'VMungo0251G0490' => 'vmu', 'VMungo0251G1748' => 'vmu', 'VMungo1309G0421' => 'vmu', 'Zm00001eb086500' => 'zma', 'Zm00001eb150680' => 'zma', 'Zm00001eb162330' => 'zma', 'Zm00001eb203130' => 'zma', 'Zm00001eb369480' => 'zma', 'Zm00001eb382340' => 'zma', 'Zm00001eb416360' => 'zma' ) $gf_id = 'HOM05D000902' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000902' ) $data_identifier = 'HOM05D000902' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 13, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 10, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 6, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 9, 'hma' => (int) 12, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 4, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 6, 'ppa' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 6, 'rch' => (int) 9, 'rsi' => (int) 9, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 12, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 3, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416360' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000902', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '663', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02470' => 'bna', 'A01p16260' => 'bna', 'A02p01680' => 'bna', 'A03p16600' => 'bna', 'A03p55660' => 'bna', 'A03p64160' => 'bna', 'A03p64170' => 'bna', 'A08p31900' => 'bna', 'A09p59530' => 'bna', 'A10p08230' => 'bna', 'A10p25090' => 'bna', 'Aa31LG3G7100' => 'aar', 'Aa31LG3G7110' => 'aar', 'Aa31LG6G13160' => 'aar', 'Aa31LG7G10770' => 'aar', 'Aa31LG7G3830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2723' => 'aag', 'Actinidia08045' => 'ach', 'Actinidia08888' => 'ach', 'Actinidia18333' => 'ach', 'Actinidia19334' => 'ach', 'Actinidia25552' => 'ach', 'Actinidia26089' => 'ach', 'Actinidia30615' => 'ach', 'Actinidia30616' => 'ach', 'Actinidia33083' => 'ach', 'Actinidia35762' => 'ach', 'Ah.02g110620' => 'amhyb', 'Ah.11g046390' => 'amhyb', 'AL1G31670' => 'aly', 'AL6G23730' => 'aly', 'AL7G14740' => 'aly', 'AL7G14750' => 'aly', 'AL7G14760' => 'aly', 'AL7G28220' => 'aly', 'AL8G24940' => 'aly', 'Aqoxy3G01665' => 'aox', 'Aqoxy3G02853' => 'aox', 'Aqoxy5G01513' => 'aox', 'Aqoxy5G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8SKA4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ75LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKDA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0LJZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7REX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZP4YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWX7I5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2QKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS0L9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPCD8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q161UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC7XCF' => 'arhy', 'AT1G19100' => 'ath', 'AT4G24970' => 'ath', 'AT4G36270' => 'ath', 'AT4G36280' => 'ath', 'AT4G36290' => 'ath', 'AT5G13130' => 'ath', 'AT5G50780' => 'ath', 'ATR0582G266' => 'atr', 'ATR0661G195' => 'atr', 'ATR1152G031' => 'atr', 'Atru.chr11.2382' => 'acertr', 'Atru.chr12.2337' => 'acertr', 'Atru.chr3.744' => 'acertr', 'Atru.chr6.1870' => 'acertr', 'Atru.chr9.2515' => 'acertr', 'AUR62004120' => 'cqu', 'AUR62005667' => 'cqu', 'AUR62007634' => 'cqu', 'AUR62008186' => 'cqu', 'AUR62008187' => 'cqu', 'AUR62008188' => 'cqu', 'AUR62027954' => 'cqu', 'AUR62028766' => 'cqu', 'AUR62028767' => 'cqu', 'AUR62028768' => 'cqu', 'AUR62028886' => 'cqu', 'AUR62029563' => 'cqu', 'AUR62038832' => 'cqu', 'BcaB01g04149' => 'bca', 'BcaB03g12940' => 'bca', 'BcaB03g13090' => 'bca', 'BcaB03g14466' => 'bca', 'BcaB05g24035' => 'bca', 'BcaC01g06050' => 'bca', 'BcaC04g19148' => 'bca', 'BcaC04g20761' => 'bca', 'BcaC06g32845' => 'bca', 'BcaC07g41274' => 'bca', 'BcaC09g50827' => 'bca', 'BcaNung00741' => 'bca', 'BcaNung00742' => 'bca', 'BcaNung01859' => 'bca', 'BcaNung03985' => 'bca', 'BcaNung03989' => 'bca', 'BcaNung05661' => 'bca', 'BolC1t00257H' => 'bol', 'BolC1t01956H' => 'bol', 'BolC2t06534H' => 'bol', 'BolC3t14334H' => 'bol', 'BolC5t30451H' => 'bol', 'BolC7t45880H' => 'bol', 'BolC7t46586H' => 'bol', 'BolC8t49301H' => 'bol', 'BolC8t51837H' => 'bol', 'BolC9t56822H' => 'bol', 'BolC9t59235H' => 'bol', 'BraA01t00234Z' => 'bra', 'BraA01t01563Z' => 'bra', 'BraA02t05147Z' => 'bra', 'BraA03t10947Z' => 'bra', 'BraA03t14633Z' => 'bra', 'BraA08t35112Z' => 'bra', 'BraA09t41330Z' => 'bra', 'BraA10t44570Z' => 'bra', 'C01p02670' => 'bna', 'C01p20260' => 'bna', 'C02p05890' => 'bna', 'C03p19530' => 'bna', 'C05p17470' => 'bna', 'C07p53900' => 'bna', 'C07p61630' => 'bna', 'C08p16800' => 'bna', 'C08p42810' => 'bna', 'C09p39480' => 'bna', 'C09p63980' => 'bna', 'CAN.G1001.7' => 'can', 'CAN.G1034.55' => 'can', 'CAN.G143.7' => 'can', 'CAN.G3340.1' => 'can', 'CAN.G358.19' => 'can', 'CAN.G373.2' => 'can', 'CAN.G674.16' => 'can', 'CAN.G674.17' => 'can', 'CAN.G674.18' => 'can', 'CAN.G732.2' => 'can', 'CAN.G732.3' => 'can', 'CAN.G993.39' => 'can', 'CANSAT01G2052' => 'cansat', 'CANSAT80G0070' => 'cansat', 'CANSAT80G0483' => 'cansat', 'CANSAT80G0625' => 'cansat', 'CARHR019690' => 'chi', 'CARHR080280' => 'chi', 'CARHR152750' => 'chi', 'CARHR152760' => 'chi', 'CARHR152770' => 'chi', 'CARHR200340' => 'chi', 'CARHR232370' => 'chi', 'CARHR244670' => 'chi', 'CARHR244680' => 'chi', 'CARHR257520' => 'chi', 'Carub.0001s1872' => 'cru', 'Carub.0006s1130' => 'cru', 'Carub.0007s0396' => 'cru', 'Carub.0007s0397' => 'cru', 'Carub.0007s1608' => 'cru', 'Carub.0008s1068' => 'cru', 'Carub.0008s1077' => 'cru', 'Ca_16158_v3' => 'car', 'Ca_17571_v3' => 'car', 'Ca_21936_v3' => 'car', 'Ca_22350_v3' => 'car', 'CBR_g22445' => 'cbr', 'CBR_g26290' => 'cbr', 'Cc04_g09610' => 'ccan', 'Cc04_g12280' => 'ccan', 'Cc07_g10230' => 'ccan', 'CDE02G0093' => 'cde', 'CDE02G0701' => 'cde', 'CDE04G1050' => 'cde', 'CDE05G1833' => 'cde', 'CDE05G3058' => 'cde', 'CDE05G3380' => 'cde', 'CDE06G0536' => 'cde', 'Cfa006923' => 'cfa', 'Cfa009402' => 'cfa', 'Cfa018751' => 'cfa', 'Cfa019164' => 'cfa', 'Cfa022935' => 'cfa', 'Ciclev10019081m.g' => 'ccl', 'Ciclev10025076m.g' => 'ccl', 'Ciclev10030712m.g' => 'ccl', 'Ciclev10033760m.g' => 'ccl', 'CiPaw.05G105600' => 'cil', 'CiPaw.08G136700' => 'cil', 'CiPaw.11G003900' => 'cil', 'CiPaw.11G023700' => 'cil', 'CiPaw.12G003700' => 'cil', 'ClCG06G017100' => 'cla', 'ClCG06G018110' => 'cla', 'ClCG07G008800' => 'cla', 'ClCG07G015330' => 'cla', 'COL.COLO4_13698' => 'col', 'COL.COLO4_16659' => 'col', 'COL.COLO4_21986' => 'col', 'COL.COLO4_24049' => 'col', 'COL.COLO4_29061' => 'col', 'COL.COLO4_29075' => 'col', 'COL.COLO4_30094' => 'col', 'Cpa.g.c33689' => 'cpa', 'Cpa.g.sc108.39' => 'cpa', 'Cpa.g.sc108.41' => 'cpa', 'Cpa.g.sc1163.1' => 'cpa', 'Cpa.g.sc4.155' => 'cpa', 'Cpa.g.sc6.194' => 'cpa', 'CsaV3_1G000340' => 'csa', 'CsaV3_1G001400' => 'csa', 'CsaV3_4G002220' => 'csa', 'CsaV3_4G005370' => 'csa', 'CSS0007487' => 'camsi', 'CSS0008066' => 'camsi', 'CSS0009120' => 'camsi', 'CSS0015512' => 'camsi', 'CSS0022409' => 'camsi', 'CSS0025358' => 'camsi', 'CSS0044547' => 'camsi', 'DCAR_013057' => 'dca', 'DCAR_015058' => 'dca', 'DCAR_016027' => 'dca', 'DCAR_017327' => 'dca', 'DCAR_020743' => 'dca', 'DCAR_026157' => 'dca', 'DCAR_032339' => 'dca', 'DCAR_032340' => 'dca', 'Dinv11200' => 'din', 'Dinv11201' => 'din', 'Dinv20631' => 'din', 'Dinv23182' => 'din', 'Dinv33466' => 'din', 'Dinv33583' => 'din', 'Dinv38565' => 'din', 'Duzib068G0200' => 'dzi', 'Duzib147G0132' => 'dzi', 'Duzib147G0635' => 'dzi', 'Duzib205G1670' => 'dzi', 'Duzib251G0606' => 'dzi', 'ECA232G3336' => 'eca', 'ECA232G3763' => 'eca', 'ECA232G4845' => 'eca', 'ECA234G1607' => 'eca', 'ECA246G0932' => 'eca', 'ECA247G0781' => 'eca', 'ECA247G1932' => 'eca', 'ECA247G2079' => 'eca', 'ECA247G3338' => 'eca', 'ECA247G4115' => 'eca', 'EL10Ac3g06552' => 'bvu', 'EL10Ac5g10721' => 'bvu', 'EL10Ac5g10722' => 'bvu', 'EL10Ac5g10723' => 'bvu', 'EL10Ac5g11361' => 'bvu', 'EL10Ac6g13553' => 'bvu', 'EL10As8g23872' => 'bvu', 'Eucgr.B00250' => 'egr', 'Eucgr.B00251' => 'egr', 'Eucgr.B03533' => 'egr', 'Eucgr.I02381' => 'egr', 'Eucgr.K02700' => 'egr', 'FAN02G0174' => 'fan', 'FAN02G3146' => 'fan', 'FAN04G1672' => 'fan', 'FAN04G2273' => 'fan', 'FAN05G2791' => 'fan', 'FAN05G4035' => 'fan', 'FAN07G0834' => 'fan', 'FAN08G1198' => 'fan', 'FAN09G4182' => 'fan', 'FAN12G0496' => 'fan', 'FAN13G1027' => 'fan', 'FAN13G2951' => 'fan', 'FAN14G0705' => 'fan', 'FAN14G0720' => 'fan', 'FAN17G0201' => 'fan', 'FAN17G2665' => 'fan', 'FAN18G1456' => 'fan', 'FAN18G1525' => 'fan', 'FAN18G3500' => 'fan', 'FAN28G2670' => 'fan', 'FvH4_1g12391' => 'fve', 'FvH4_4g23220' => 'fve', 'FvH4_5g08810' => 'fve', 'FvH4_5g28960' => 'fve', 'FvH4_6g42820' => 'fve', 'FvH4_6g51110' => 'fve', 'Glyma.02G051802' => 'gma', 'Glyma.04G185300' => 'gma', 'Glyma.05G202900' => 'gma', 'Glyma.08G010300' => 'gma', 'Glyma.16G131900' => 'gma', 'Glyma.17G087900' => 'gma', 'Gohir.A07G048600' => 'ghi', 'Gohir.A11G179000' => 'ghi', 'Gohir.A12G140900' => 'ghi', 'Gohir.A12G140950' => 'ghi', 'Gohir.A12G191700' => 'ghi', 'Gohir.A13G086300' => 'ghi', 'Gohir.D07G052900' => 'ghi', 'Gohir.D11G186600' => 'ghi', 'Gohir.D12G145575' => 'ghi', 'Gohir.D12G145650' => 'ghi', 'Gohir.D12G145725' => 'ghi', 'Gohir.D12G194050' => 'ghi', 'Gohir.D13G091800' => 'ghi', 'Gorai.001G055900' => 'gra', 'Gorai.007G198400' => 'gra', 'Gorai.008G157000' => 'gra', 'Gorai.008G157100' => 'gra', 'Gorai.008G208700' => 'gra', 'Gorai.010G138700' => 'gra', 'GSVIVG01000977001' => 'vvi', 'GSVIVG01007708001' => 'vvi', 'GSVIVG01008587001' => 'vvi', 'GSVIVG01018849001' => 'vvi', 'GSVIVG01032432001' => 'vvi', 'HanXRQChr02g0034131' => 'han', 'HanXRQChr02g0035981' => 'han', 'HanXRQChr02g0035991' => 'han', 'HanXRQChr05g0155611' => 'han', 'HanXRQChr05g0155621' => 'han', 'HanXRQChr08g0236501' => 'han', 'HanXRQChr09g0261321' => 'han', 'HanXRQChr09g0272081' => 'han', 'HanXRQChr10g0310741' => 'han', 'HanXRQChr11g0325591' => 'han', 'HanXRQChr12g0385691' => 'han', 'HanXRQChr13g0387801' => 'han', 'HanXRQChr15g0463011' => 'han', 'Haze_03826' => 'cav', 'Haze_03827' => 'cav', 'Haze_07183' => 'cav', 'Haze_07537' => 'cav', 'Haze_07539' => 'cav', 'Haze_12461' => 'cav', 'Haze_16115' => 'cav', 'Haze_16808' => 'cav', 'Haze_18531' => 'cav', 'Hma1.2p1_0046F.1_g026700' => 'hma', 'Hma1.2p1_0046F.1_g026710' => 'hma', 'Hma1.2p1_0168F.1_g074340' => 'hma', 'Hma1.2p1_0266F.1_g107030' => 'hma', 'Hma1.2p1_0266F.1_g107060' => 'hma', 'Hma1.2p1_0275F.1_g110510' => 'hma', 'Hma1.2p1_0592F.1_g185490' => 'hma', 'Hma1.2p1_0592F.1_g185500' => 'hma', 'Hma1.2p1_0592F.1_g185510' => 'hma', 'Hma1.2p1_0592F.1_g185520' => 'hma', 'Hma1.2p1_0592F.1_g185530' => 'hma', 'Hma1.2p1_0818F.1_g223450' => 'hma', 'HPP92_009708' => 'vpl', 'HPP92_009793' => 'vpl', 'HPP92_009796' => 'vpl', 'HPP92_009797' => 'vpl', 'HPP92_014940' => 'vpl', 'HPP92_014988' => 'vpl', 'Hund02463' => 'sun', 'Hund02760' => 'sun', 'Hund05071' => 'sun', 'Hund10108' => 'sun', 'Hund11204' => 'sun', 'Hund14016' => 'sun', 'Hund16464' => 'sun', 'Lalb_Chr09g0333391' => 'lal', 'Lalb_Chr11g0070461' => 'lal', 'Lalb_Chr12g0201671' => 'lal', 'Lalb_Chr13g0297161' => 'lal', 'Lj1g0002823' => 'lja', 'Lj3C1074T6' => 'lonja', 'Lj4A212T28' => 'lonja', 'Lj4g0005516' => 'lja', 'Lj4g0013705' => 'lja', 'Lj4g0027865' => 'lja', 'Lj5C92G16' => 'lonja', 'Lj5C92T12' => 'lonja', 'Lj7C596T3' => 'lonja', 'Lj9A446G59' => 'lonja', 'Lj9A482G21' => 'lonja', 'Lsat_1_v5_gn_1_28261' => 'lsa', 'Lsat_1_v5_gn_1_28281' => 'lsa', 'Lsat_1_v5_gn_1_32721' => 'lsa', 'Lsat_1_v5_gn_4_151760' => 'lsa', 'Lsat_1_v5_gn_4_2120' => 'lsa', 'Lsat_1_v5_gn_4_75761' => 'lsa', 'Lsat_1_v5_gn_5_10920' => 'lsa', 'Manes.02G099900' => 'mes', 'Manes.11G096200' => 'mes', 'Manes.12G007200' => 'mes', 'Manes.14G048300' => 'mes', 'Manes.17G114700' => 'mes', 'Mapoly0002s0070' => 'mpo', 'Mapoly0029s0099' => 'mpo', 'MBI07_g24742_MAGBIO' => 'mbi', 'MBI10_g27988_MAGBIO' => 'mbi', 'MBI11_g13057_MAGBIO' => 'mbi', 'MD02G1137200' => 'mdo', 'MD06G1137200' => 'mdo', 'MD07G1122300' => 'mdo', 'MD09G1078200' => 'mdo', 'MD13G1123700' => 'mdo', 'MD14G1151900' => 'mdo', 'MD17G1030900' => 'mdo', 'MD17G1068200' => 'mdo', 'MD17G1068600' => 'mdo', 'Medtr3g077540' => 'mtr', 'Medtr4g105530' => 'mtr', 'Medtr8g076580' => 'mtr', 'Medtr8g076590' => 'mtr', 'Medtr8g096410' => 'mtr', 'MELO3C016411.2' => 'cme', 'MELO3C017780.2' => 'cme', 'MELO3C022560.2' => 'cme', 'MELO3C026187.2' => 'cme', 'MELO3C026286.2' => 'cme', 'MELO3C032854.2' => 'cme', 'Migut.H02495' => 'egut', 'Migut.I00561' => 'egut', 'Migut.K01015' => 'egut', 'Migut.K01016' => 'egut', 'Migut.L00743' => 'egut', 'Migut.L00744' => 'egut', 'Migut.L00746' => 'egut', 'Migut.L00798' => 'egut', 'Migut.L00799' => 'egut', 'Migut.N02096' => 'egut', 'MSTRG.11259' => 'ama', 'MSTRG.23142' => 'ama', 'MSTRG.2499' => 'ama', 'Nitab4.5_0000003g0730' => 'nta', 'Nitab4.5_0000137g0020' => 'nta', 'Nitab4.5_0000721g0210' => 'nta', 'Nitab4.5_0000723g0050' => 'nta', 'Nitab4.5_0000913g0070' => 'nta', 'Nitab4.5_0001332g0040' => 'nta', 'Nitab4.5_0001771g0050' => 'nta', 'Nitab4.5_0001918g0050' => 'nta', 'Nitab4.5_0002686g0030' => 'nta', 'Nitab4.5_0003156g0020' => 'nta', 'Nitab4.5_0003383g0040' => 'nta', 'Nitab4.5_0003918g0010' => 'nta', 'Nitab4.5_0006760g0010' => 'nta', 'Nn1g05981' => 'nnu', 'Nn1g06288' => 'nnu', 'Nn3g16371' => 'nnu', 'Nn3g16786' => 'nnu', 'Nn4g22232' => 'nnu', 'Oeu005144.1' => 'oeu', 'Oeu005145.1' => 'oeu', 'Oeu011348.1' => 'oeu', 'Oeu016415.1' => 'oeu', 'Oeu023501.1' => 'oeu', 'Oeu044473.1' => 'oeu', 'Oeu048892.2' => 'oeu', 'Os01g0549200' => 'osa', 'Os02g0469300' => 'osa', 'Os04g0311100' => 'osa', 'Os06g0474900' => 'osa', 'Os10g0181700' => 'osa', 'Os11g0454800' => 'osa', 'Peaxi162Scf00037g00714' => 'pax', 'Peaxi162Scf00084g01217' => 'pax', 'Peaxi162Scf00257g00217' => 'pax', 'Peaxi162Scf00516g00215' => 'pax', 'Peaxi162Scf00689g00123' => 'pax', 'PGR044G2719' => 'pgr', 'PGR083G1360' => 'pgr', 'PGR102G2849' => 'pgr', 'PGR119G2534' => 'pgr', 'PGSC0003DMG400003538' => 'stu', 'PGSC0003DMG400028138' => 'stu', 'PGSC0003DMG400031732' => 'stu', 'PGSC0003DMG400038165' => 'stu', 'Phvul.002G284600' => 'pvu', 'Phvul.003G258200' => 'pvu', 'Phvul.009G176500' => 'pvu', 'Potri.003G167201' => 'ptr', 'Potri.005G118400' => 'ptr', 'Potri.012G089000' => 'ptr', 'Potri.012G102800' => 'ptr', 'Potri.015G079400' => 'ptr', 'Potri.015G100900' => 'ptr', 'Pp3c14_9810' => 'ppa', 'Pp3c15_10450' => 'ppa', 'Pp3c20_19150' => 'ppa', 'Pp3c23_12740' => 'ppa', 'Pp3c23_6310' => 'ppa', 'Pp3c24_3720' => 'ppa', 'Pp3c27_2580' => 'ppa', 'Pp3c9_8990' => 'ppa', 'PRCOL_00002854' => 'pco', 'Prupe.1G221200' => 'ppe', 'Prupe.3G289000' => 'ppe', 'Prupe.5G147000' => 'ppe', 'Prupe.6G157300' => 'ppe', 'Prupe.7G163400' => 'ppe', 'Psat0s2177g0040' => 'psa', 'Psat3g174760' => 'psa', 'Psat3g192160' => 'psa', 'Psat4g058520' => 'psa', 'Psat4g096840' => 'psa', 'Psat7g037320' => 'psa', 'PSO017G1274' => 'pso', 'PSO017G5166' => 'pso', 'PSO063G4558' => 'pso', 'PSO170G4458' => 'pso', 'PSO170G5005' => 'pso', 'PSO210G6156' => 'pso', 'PSO210G6635' => 'pso', 'PSO210G7397' => 'pso', 'PSO210G7700' => 'pso', 'PSO455G0035' => 'pso', 'PSO455G0180' => 'pso', 'PSO478G4515' => 'pso', 'PSO832G1305' => 'pso', 'PSO832G3489' => 'pso', 'QL02p075247' => 'qlo', 'QL03p051148' => 'qlo', 'QL05p010313' => 'qlo', 'QL06p034627' => 'qlo', 'QL10p001889' => 'qlo', 'QL10p010846' => 'qlo', 'RcHm_v2.0_Chr1g0350621' => 'rch', 'RcHm_v2.0_Chr1g0350641' => 'rch', 'RcHm_v2.0_Chr2g0092891' => 'rch', 'RcHm_v2.0_Chr2g0100251' => 'rch', 'RcHm_v2.0_Chr2g0158661' => 'rch', 'RcHm_v2.0_Chr2g0172741' => 'rch', 'RcHm_v2.0_Chr4g0429571' => 'rch', 'RcHm_v2.0_Chr5g0042471' => 'rch', 'RcHm_v2.0_Chr7g0189451' => 'rch', 'Rhsim08G0052000' => 'rsi', 'Rhsim08G0174400' => 'rsi', 'Rhsim08G0193200' => 'rsi', 'Rhsim10G0214800' => 'rsi', 'Rhsim10G0214900' => 'rsi', 'Rhsim10G0215000' => 'rsi', 'Rhsim12G0022900' => 'rsi', 'Rhsim12G0177500' => 'rsi', 'Rhsim12G0177700' => 'rsi', 'Sabra03G0122600' => 'sbr', 'Sabra05G0097400' => 'sbr', 'Sabra12G0064100' => 'sbr', 'Sabra15G0121300' => 'sbr', 'SalBow2G0642' => 'sbo', 'SalBow5G2667' => 'sbo', 'SalBow5G4873' => 'sbo', 'SalBow8G2395' => 'sbo', 'Sc03g0003290' => 'sci', 'Sc10g0010130' => 'sci', 'Sc22g0003650' => 'sci', 'Sed0001603' => 'sed', 'Sed0004259' => 'sed', 'Sed0006789' => 'sed', 'Sed0011838' => 'sed', 'Sed0012964' => 'sed', 'Sed0016383' => 'sed', 'Sed0019010' => 'sed', 'Sed0020188' => 'sed', 'SEGI_04702' => 'sgi', 'SEGI_17231' => 'sgi', 'SEGI_18877' => 'sgi', 'SEGI_25196' => 'sgi', 'SEGI_25515' => 'sgi', 'SEGI_28445' => 'sgi', 'SEGI_37452' => 'sgi', 'SGA_v2.0_scaffold188G40336' => 'sas', 'SGA_v2.0_scaffold228G43247' => 'sas', 'SGA_v2.0_scaffold280G46853' => 'sas', 'SGA_v2.0_scaffold34G13808' => 'sas', 'SGA_v2.0_scaffold40G15576' => 'sas', 'SGA_v2.0_scaffold611G53188' => 'sas', 'SGA_v2.0_scaffold78G25461' => 'sas', 'SGA_v2.0_scaffold90G27888' => 'sas', 'SHI08601' => 'shi', 'SHI08606' => 'shi', 'SHI17117' => 'shi', 'SHI17119' => 'shi', 'SMO118G0201' => 'smo', 'SMO169G0247' => 'smo', 'SMO176G0006' => 'smo', 'SMO176G0015' => 'smo', 'SMO202G0006' => 'smo', 'SMO240G0050' => 'smo', 'SMO286G0009' => 'smo', 'SMO338G0033' => 'smo', 'SMO356G0533' => 'smo', 'SMO364G0382' => 'smo', 'SMO367G0166' => 'smo', 'SMO367G1098' => 'smo', 'Solyc01g009920.3' => 'sly', 'Solyc01g099300.3' => 'sly', 'Solyc02g084700.3' => 'sly', 'Solyc03g097520.3' => 'sly', 'Solyc06g071580.3' => 'sly', 'Solyc10g081760.3' => 'sly', 'Sopen01g005480' => 'spe', 'Sopen01g042850' => 'spe', 'Sopen02g029370' => 'spe', 'Sopen03g028280' => 'spe', 'Sopen06g027870' => 'spe', 'Sopen10g032270' => 'spe', 'Sp5g18180' => 'spa', 'Sp6g12880' => 'spa', 'Sp6g30850' => 'spa', 'Sp7g22960' => 'spa', 'Sp7g34010' => 'spa', 'SpUn1326_0010' => 'spa', 'TAR371G0242' => 'tar', 'TAR622G0638' => 'tar', 'TAR628G1548' => 'tar', 'TAR629G1079' => 'tar', 'TAR629G3413' => 'tar', 'THA.LOC104804249' => 'tha', 'THA.LOC104808315' => 'tha', 'THA.LOC104809238' => 'tha', 'THA.LOC104825484' => 'tha', 'Thecc.01G025500' => 'tca', 'Thecc.03G015800' => 'tca', 'Thecc.03G018000' => 'tca', 'Thecc.03G134800' => 'tca', 'Thecc.04G014700' => 'tca', 'Thhalv10006991m.g' => 'esa', 'Thhalv10012707m.g' => 'esa', 'Thhalv10015739m.g' => 'esa', 'Thhalv10024553m.g' => 'esa', 'Thhalv10024673m.g' => 'esa', 'Thhalv10029187m.g' => 'esa', 'TPR.G12971' => 'tpr', 'TPR.G29396' => 'tpr', 'TPR.G33376' => 'tpr', 'TPR.G35508' => 'tpr', 'TPR.G35516' => 'tpr', 'TPR.G37317' => 'tpr', 'TPR.G37389' => 'tpr', 'TPR.G37523' => 'tpr', 'TPR.G559' => 'tpr', 'TWI14G0070' => 'twi', 'TWI14G0729' => 'twi', 'TWI18G0596' => 'twi', 'TWI39G0780' => 'twi', 'TWI39G0850' => 'twi', 'TWI73G1052' => 'twi', 'unitig_52.g17485' => 'ugi', 'unitig_61.g26355' => 'ugi', 'vmacro01040' => 'vma', 'vmacro16731' => 'vma', 'vmacro18270' => 'vma', 'vmacro19142' => 'vma', 'vmacro19407' => 'vma', 'vmacro19408' => 'vma', 'vmacro21899' => 'vma', 'vmacro21900' => 'vma', 'vmacro21901' => 'vma', 'VMungo0251G0490' => 'vmu', 'VMungo0251G1748' => 'vmu', 'VMungo1309G0421' => 'vmu', 'Zm00001eb086500' => 'zma', 'Zm00001eb150680' => 'zma', 'Zm00001eb162330' => 'zma', 'Zm00001eb203130' => 'zma', 'Zm00001eb369480' => 'zma', 'Zm00001eb382340' => 'zma', 'Zm00001eb416360' => 'zma' ), 'gf_id' => 'HOM05D000902', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000902' ), 'data_identifier' => 'HOM05D000902', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000902', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '663', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02470' => 'bna', 'A01p16260' => 'bna', 'A02p01680' => 'bna', 'A03p16600' => 'bna', 'A03p55660' => 'bna', 'A03p64160' => 'bna', 'A03p64170' => 'bna', 'A08p31900' => 'bna', 'A09p59530' => 'bna', 'A10p08230' => 'bna', 'A10p25090' => 'bna', 'Aa31LG3G7100' => 'aar', 'Aa31LG3G7110' => 'aar', 'Aa31LG6G13160' => 'aar', 'Aa31LG7G10770' => 'aar', 'Aa31LG7G3830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2723' => 'aag', 'Actinidia08045' => 'ach', 'Actinidia08888' => 'ach', 'Actinidia18333' => 'ach', 'Actinidia19334' => 'ach', 'Actinidia25552' => 'ach', 'Actinidia26089' => 'ach', 'Actinidia30615' => 'ach', 'Actinidia30616' => 'ach', 'Actinidia33083' => 'ach', 'Actinidia35762' => 'ach', 'Ah.02g110620' => 'amhyb', 'Ah.11g046390' => 'amhyb', 'AL1G31670' => 'aly', 'AL6G23730' => 'aly', 'AL7G14740' => 'aly', 'AL7G14750' => 'aly', 'AL7G14760' => 'aly', 'AL7G28220' => 'aly', 'AL8G24940' => 'aly', 'Aqoxy3G01665' => 'aox', 'Aqoxy3G02853' => 'aox', 'Aqoxy5G01513' => 'aox', 'Aqoxy5G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8SKA4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ75LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKDA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0LJZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7REX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZP4YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWX7I5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2QKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS0L9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPCD8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q161UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC7XCF' => 'arhy', 'AT1G19100' => 'ath', 'AT4G24970' => 'ath', 'AT4G36270' => 'ath', 'AT4G36280' => 'ath', 'AT4G36290' => 'ath', 'AT5G13130' => 'ath', 'AT5G50780' => 'ath', 'ATR0582G266' => 'atr', 'ATR0661G195' => 'atr', 'ATR1152G031' => 'atr', 'Atru.chr11.2382' => 'acertr', 'Atru.chr12.2337' => 'acertr', 'Atru.chr3.744' => 'acertr', 'Atru.chr6.1870' => 'acertr', 'Atru.chr9.2515' => 'acertr', 'AUR62004120' => 'cqu', 'AUR62005667' => 'cqu', 'AUR62007634' => 'cqu', 'AUR62008186' => 'cqu', 'AUR62008187' => 'cqu', 'AUR62008188' => 'cqu', 'AUR62027954' => 'cqu', 'AUR62028766' => 'cqu', 'AUR62028767' => 'cqu', 'AUR62028768' => 'cqu', 'AUR62028886' => 'cqu', 'AUR62029563' => 'cqu', 'AUR62038832' => 'cqu', 'BcaB01g04149' => 'bca', 'BcaB03g12940' => 'bca', 'BcaB03g13090' => 'bca', 'BcaB03g14466' => 'bca', 'BcaB05g24035' => 'bca', 'BcaC01g06050' => 'bca', 'BcaC04g19148' => 'bca', 'BcaC04g20761' => 'bca', 'BcaC06g32845' => 'bca', 'BcaC07g41274' => 'bca', 'BcaC09g50827' => 'bca', 'BcaNung00741' => 'bca', 'BcaNung00742' => 'bca', 'BcaNung01859' => 'bca', 'BcaNung03985' => 'bca', 'BcaNung03989' => 'bca', 'BcaNung05661' => 'bca', 'BolC1t00257H' => 'bol', 'BolC1t01956H' => 'bol', 'BolC2t06534H' => 'bol', 'BolC3t14334H' => 'bol', 'BolC5t30451H' => 'bol', 'BolC7t45880H' => 'bol', 'BolC7t46586H' => 'bol', 'BolC8t49301H' => 'bol', 'BolC8t51837H' => 'bol', 'BolC9t56822H' => 'bol', 'BolC9t59235H' => 'bol', 'BraA01t00234Z' => 'bra', 'BraA01t01563Z' => 'bra', 'BraA02t05147Z' => 'bra', 'BraA03t10947Z' => 'bra', 'BraA03t14633Z' => 'bra', 'BraA08t35112Z' => 'bra', 'BraA09t41330Z' => 'bra', 'BraA10t44570Z' => 'bra', 'C01p02670' => 'bna', 'C01p20260' => 'bna', 'C02p05890' => 'bna', 'C03p19530' => 'bna', 'C05p17470' => 'bna', 'C07p53900' => 'bna', 'C07p61630' => 'bna', 'C08p16800' => 'bna', 'C08p42810' => 'bna', 'C09p39480' => 'bna', 'C09p63980' => 'bna', 'CAN.G1001.7' => 'can', 'CAN.G1034.55' => 'can', 'CAN.G143.7' => 'can', 'CAN.G3340.1' => 'can', 'CAN.G358.19' => 'can', 'CAN.G373.2' => 'can', 'CAN.G674.16' => 'can', 'CAN.G674.17' => 'can', 'CAN.G674.18' => 'can', 'CAN.G732.2' => 'can', 'CAN.G732.3' => 'can', 'CAN.G993.39' => 'can', 'CANSAT01G2052' => 'cansat', 'CANSAT80G0070' => 'cansat', 'CANSAT80G0483' => 'cansat', 'CANSAT80G0625' => 'cansat', 'CARHR019690' => 'chi', 'CARHR080280' => 'chi', 'CARHR152750' => 'chi', 'CARHR152760' => 'chi', 'CARHR152770' => 'chi', 'CARHR200340' => 'chi', 'CARHR232370' => 'chi', 'CARHR244670' => 'chi', 'CARHR244680' => 'chi', 'CARHR257520' => 'chi', 'Carub.0001s1872' => 'cru', 'Carub.0006s1130' => 'cru', 'Carub.0007s0396' => 'cru', 'Carub.0007s0397' => 'cru', 'Carub.0007s1608' => 'cru', 'Carub.0008s1068' => 'cru', 'Carub.0008s1077' => 'cru', 'Ca_16158_v3' => 'car', 'Ca_17571_v3' => 'car', 'Ca_21936_v3' => 'car', 'Ca_22350_v3' => 'car', 'CBR_g22445' => 'cbr', 'CBR_g26290' => 'cbr', 'Cc04_g09610' => 'ccan', 'Cc04_g12280' => 'ccan', 'Cc07_g10230' => 'ccan', 'CDE02G0093' => 'cde', 'CDE02G0701' => 'cde', 'CDE04G1050' => 'cde', 'CDE05G1833' => 'cde', 'CDE05G3058' => 'cde', 'CDE05G3380' => 'cde', 'CDE06G0536' => 'cde', 'Cfa006923' => 'cfa', 'Cfa009402' => 'cfa', 'Cfa018751' => 'cfa', 'Cfa019164' => 'cfa', 'Cfa022935' => 'cfa', 'Ciclev10019081m.g' => 'ccl', 'Ciclev10025076m.g' => 'ccl', 'Ciclev10030712m.g' => 'ccl', 'Ciclev10033760m.g' => 'ccl', 'CiPaw.05G105600' => 'cil', 'CiPaw.08G136700' => 'cil', 'CiPaw.11G003900' => 'cil', 'CiPaw.11G023700' => 'cil', 'CiPaw.12G003700' => 'cil', 'ClCG06G017100' => 'cla', 'ClCG06G018110' => 'cla', 'ClCG07G008800' => 'cla', 'ClCG07G015330' => 'cla', 'COL.COLO4_13698' => 'col', 'COL.COLO4_16659' => 'col', 'COL.COLO4_21986' => 'col', 'COL.COLO4_24049' => 'col', 'COL.COLO4_29061' => 'col', 'COL.COLO4_29075' => 'col', 'COL.COLO4_30094' => 'col', 'Cpa.g.c33689' => 'cpa', 'Cpa.g.sc108.39' => 'cpa', 'Cpa.g.sc108.41' => 'cpa', 'Cpa.g.sc1163.1' => 'cpa', 'Cpa.g.sc4.155' => 'cpa', 'Cpa.g.sc6.194' => 'cpa', 'CsaV3_1G000340' => 'csa', 'CsaV3_1G001400' => 'csa', 'CsaV3_4G002220' => 'csa', 'CsaV3_4G005370' => 'csa', 'CSS0007487' => 'camsi', 'CSS0008066' => 'camsi', 'CSS0009120' => 'camsi', 'CSS0015512' => 'camsi', 'CSS0022409' => 'camsi', 'CSS0025358' => 'camsi', 'CSS0044547' => 'camsi', 'DCAR_013057' => 'dca', 'DCAR_015058' => 'dca', 'DCAR_016027' => 'dca', 'DCAR_017327' => 'dca', 'DCAR_020743' => 'dca', 'DCAR_026157' => 'dca', 'DCAR_032339' => 'dca', 'DCAR_032340' => 'dca', 'Dinv11200' => 'din', 'Dinv11201' => 'din', 'Dinv20631' => 'din', 'Dinv23182' => 'din', 'Dinv33466' => 'din', 'Dinv33583' => 'din', 'Dinv38565' => 'din', 'Duzib068G0200' => 'dzi', 'Duzib147G0132' => 'dzi', 'Duzib147G0635' => 'dzi', 'Duzib205G1670' => 'dzi', 'Duzib251G0606' => 'dzi', 'ECA232G3336' => 'eca', 'ECA232G3763' => 'eca', 'ECA232G4845' => 'eca', 'ECA234G1607' => 'eca', 'ECA246G0932' => 'eca', 'ECA247G0781' => 'eca', 'ECA247G1932' => 'eca', 'ECA247G2079' => 'eca', 'ECA247G3338' => 'eca', 'ECA247G4115' => 'eca', 'EL10Ac3g06552' => 'bvu', 'EL10Ac5g10721' => 'bvu', 'EL10Ac5g10722' => 'bvu', 'EL10Ac5g10723' => 'bvu', 'EL10Ac5g11361' => 'bvu', 'EL10Ac6g13553' => 'bvu', 'EL10As8g23872' => 'bvu', 'Eucgr.B00250' => 'egr', 'Eucgr.B00251' => 'egr', 'Eucgr.B03533' => 'egr', 'Eucgr.I02381' => 'egr', 'Eucgr.K02700' => 'egr', 'FAN02G0174' => 'fan', 'FAN02G3146' => 'fan', 'FAN04G1672' => 'fan', 'FAN04G2273' => 'fan', 'FAN05G2791' => 'fan', 'FAN05G4035' => 'fan', 'FAN07G0834' => 'fan', 'FAN08G1198' => 'fan', 'FAN09G4182' => 'fan', 'FAN12G0496' => 'fan', 'FAN13G1027' => 'fan', 'FAN13G2951' => 'fan', 'FAN14G0705' => 'fan', 'FAN14G0720' => 'fan', 'FAN17G0201' => 'fan', 'FAN17G2665' => 'fan', 'FAN18G1456' => 'fan', 'FAN18G1525' => 'fan', 'FAN18G3500' => 'fan', 'FAN28G2670' => 'fan', 'FvH4_1g12391' => 'fve', 'FvH4_4g23220' => 'fve', 'FvH4_5g08810' => 'fve', 'FvH4_5g28960' => 'fve', 'FvH4_6g42820' => 'fve', 'FvH4_6g51110' => 'fve', 'Glyma.02G051802' => 'gma', 'Glyma.04G185300' => 'gma', 'Glyma.05G202900' => 'gma', 'Glyma.08G010300' => 'gma', 'Glyma.16G131900' => 'gma', 'Glyma.17G087900' => 'gma', 'Gohir.A07G048600' => 'ghi', 'Gohir.A11G179000' => 'ghi', 'Gohir.A12G140900' => 'ghi', 'Gohir.A12G140950' => 'ghi', 'Gohir.A12G191700' => 'ghi', 'Gohir.A13G086300' => 'ghi', 'Gohir.D07G052900' => 'ghi', 'Gohir.D11G186600' => 'ghi', 'Gohir.D12G145575' => 'ghi', 'Gohir.D12G145650' => 'ghi', 'Gohir.D12G145725' => 'ghi', 'Gohir.D12G194050' => 'ghi', 'Gohir.D13G091800' => 'ghi', 'Gorai.001G055900' => 'gra', 'Gorai.007G198400' => 'gra', 'Gorai.008G157000' => 'gra', 'Gorai.008G157100' => 'gra', 'Gorai.008G208700' => 'gra', 'Gorai.010G138700' => 'gra', 'GSVIVG01000977001' => 'vvi', 'GSVIVG01007708001' => 'vvi', 'GSVIVG01008587001' => 'vvi', 'GSVIVG01018849001' => 'vvi', 'GSVIVG01032432001' => 'vvi', 'HanXRQChr02g0034131' => 'han', 'HanXRQChr02g0035981' => 'han', 'HanXRQChr02g0035991' => 'han', 'HanXRQChr05g0155611' => 'han', 'HanXRQChr05g0155621' => 'han', 'HanXRQChr08g0236501' => 'han', 'HanXRQChr09g0261321' => 'han', 'HanXRQChr09g0272081' => 'han', 'HanXRQChr10g0310741' => 'han', 'HanXRQChr11g0325591' => 'han', 'HanXRQChr12g0385691' => 'han', 'HanXRQChr13g0387801' => 'han', 'HanXRQChr15g0463011' => 'han', 'Haze_03826' => 'cav', 'Haze_03827' => 'cav', 'Haze_07183' => 'cav', 'Haze_07537' => 'cav', 'Haze_07539' => 'cav', 'Haze_12461' => 'cav', 'Haze_16115' => 'cav', 'Haze_16808' => 'cav', 'Haze_18531' => 'cav', 'Hma1.2p1_0046F.1_g026700' => 'hma', 'Hma1.2p1_0046F.1_g026710' => 'hma', 'Hma1.2p1_0168F.1_g074340' => 'hma', 'Hma1.2p1_0266F.1_g107030' => 'hma', 'Hma1.2p1_0266F.1_g107060' => 'hma', 'Hma1.2p1_0275F.1_g110510' => 'hma', 'Hma1.2p1_0592F.1_g185490' => 'hma', 'Hma1.2p1_0592F.1_g185500' => 'hma', 'Hma1.2p1_0592F.1_g185510' => 'hma', 'Hma1.2p1_0592F.1_g185520' => 'hma', 'Hma1.2p1_0592F.1_g185530' => 'hma', 'Hma1.2p1_0818F.1_g223450' => 'hma', 'HPP92_009708' => 'vpl', 'HPP92_009793' => 'vpl', 'HPP92_009796' => 'vpl', 'HPP92_009797' => 'vpl', 'HPP92_014940' => 'vpl', 'HPP92_014988' => 'vpl', 'Hund02463' => 'sun', 'Hund02760' => 'sun', 'Hund05071' => 'sun', 'Hund10108' => 'sun', 'Hund11204' => 'sun', 'Hund14016' => 'sun', 'Hund16464' => 'sun', 'Lalb_Chr09g0333391' => 'lal', 'Lalb_Chr11g0070461' => 'lal', 'Lalb_Chr12g0201671' => 'lal', 'Lalb_Chr13g0297161' => 'lal', 'Lj1g0002823' => 'lja', 'Lj3C1074T6' => 'lonja', 'Lj4A212T28' => 'lonja', 'Lj4g0005516' => 'lja', 'Lj4g0013705' => 'lja', 'Lj4g0027865' => 'lja', 'Lj5C92G16' => 'lonja', 'Lj5C92T12' => 'lonja', 'Lj7C596T3' => 'lonja', 'Lj9A446G59' => 'lonja', 'Lj9A482G21' => 'lonja', 'Lsat_1_v5_gn_1_28261' => 'lsa', 'Lsat_1_v5_gn_1_28281' => 'lsa', 'Lsat_1_v5_gn_1_32721' => 'lsa', 'Lsat_1_v5_gn_4_151760' => 'lsa', 'Lsat_1_v5_gn_4_2120' => 'lsa', 'Lsat_1_v5_gn_4_75761' => 'lsa', 'Lsat_1_v5_gn_5_10920' => 'lsa', 'Manes.02G099900' => 'mes', 'Manes.11G096200' => 'mes', 'Manes.12G007200' => 'mes', 'Manes.14G048300' => 'mes', 'Manes.17G114700' => 'mes', 'Mapoly0002s0070' => 'mpo', 'Mapoly0029s0099' => 'mpo', 'MBI07_g24742_MAGBIO' => 'mbi', 'MBI10_g27988_MAGBIO' => 'mbi', 'MBI11_g13057_MAGBIO' => 'mbi', 'MD02G1137200' => 'mdo', 'MD06G1137200' => 'mdo', 'MD07G1122300' => 'mdo', 'MD09G1078200' => 'mdo', 'MD13G1123700' => 'mdo', 'MD14G1151900' => 'mdo', 'MD17G1030900' => 'mdo', 'MD17G1068200' => 'mdo', 'MD17G1068600' => 'mdo', 'Medtr3g077540' => 'mtr', 'Medtr4g105530' => 'mtr', 'Medtr8g076580' => 'mtr', 'Medtr8g076590' => 'mtr', 'Medtr8g096410' => 'mtr', 'MELO3C016411.2' => 'cme', 'MELO3C017780.2' => 'cme', 'MELO3C022560.2' => 'cme', 'MELO3C026187.2' => 'cme', 'MELO3C026286.2' => 'cme', 'MELO3C032854.2' => 'cme', 'Migut.H02495' => 'egut', 'Migut.I00561' => 'egut', 'Migut.K01015' => 'egut', 'Migut.K01016' => 'egut', 'Migut.L00743' => 'egut', 'Migut.L00744' => 'egut', 'Migut.L00746' => 'egut', 'Migut.L00798' => 'egut', 'Migut.L00799' => 'egut', 'Migut.N02096' => 'egut', 'MSTRG.11259' => 'ama', 'MSTRG.23142' => 'ama', 'MSTRG.2499' => 'ama', 'Nitab4.5_0000003g0730' => 'nta', 'Nitab4.5_0000137g0020' => 'nta', 'Nitab4.5_0000721g0210' => 'nta', 'Nitab4.5_0000723g0050' => 'nta', 'Nitab4.5_0000913g0070' => 'nta', 'Nitab4.5_0001332g0040' => 'nta', 'Nitab4.5_0001771g0050' => 'nta', 'Nitab4.5_0001918g0050' => 'nta', 'Nitab4.5_0002686g0030' => 'nta', 'Nitab4.5_0003156g0020' => 'nta', 'Nitab4.5_0003383g0040' => 'nta', 'Nitab4.5_0003918g0010' => 'nta', 'Nitab4.5_0006760g0010' => 'nta', 'Nn1g05981' => 'nnu', 'Nn1g06288' => 'nnu', 'Nn3g16371' => 'nnu', 'Nn3g16786' => 'nnu', 'Nn4g22232' => 'nnu', 'Oeu005144.1' => 'oeu', 'Oeu005145.1' => 'oeu', 'Oeu011348.1' => 'oeu', 'Oeu016415.1' => 'oeu', 'Oeu023501.1' => 'oeu', 'Oeu044473.1' => 'oeu', 'Oeu048892.2' => 'oeu', 'Os01g0549200' => 'osa', 'Os02g0469300' => 'osa', 'Os04g0311100' => 'osa', 'Os06g0474900' => 'osa', 'Os10g0181700' => 'osa', 'Os11g0454800' => 'osa', 'Peaxi162Scf00037g00714' => 'pax', 'Peaxi162Scf00084g01217' => 'pax', 'Peaxi162Scf00257g00217' => 'pax', 'Peaxi162Scf00516g00215' => 'pax', 'Peaxi162Scf00689g00123' => 'pax', 'PGR044G2719' => 'pgr', 'PGR083G1360' => 'pgr', 'PGR102G2849' => 'pgr', 'PGR119G2534' => 'pgr', 'PGSC0003DMG400003538' => 'stu', 'PGSC0003DMG400028138' => 'stu', 'PGSC0003DMG400031732' => 'stu', 'PGSC0003DMG400038165' => 'stu', 'Phvul.002G284600' => 'pvu', 'Phvul.003G258200' => 'pvu', 'Phvul.009G176500' => 'pvu', 'Potri.003G167201' => 'ptr', 'Potri.005G118400' => 'ptr', 'Potri.012G089000' => 'ptr', 'Potri.012G102800' => 'ptr', 'Potri.015G079400' => 'ptr', 'Potri.015G100900' => 'ptr', 'Pp3c14_9810' => 'ppa', 'Pp3c15_10450' => 'ppa', 'Pp3c20_19150' => 'ppa', 'Pp3c23_12740' => 'ppa', 'Pp3c23_6310' => 'ppa', 'Pp3c24_3720' => 'ppa', 'Pp3c27_2580' => 'ppa', 'Pp3c9_8990' => 'ppa', 'PRCOL_00002854' => 'pco', 'Prupe.1G221200' => 'ppe', 'Prupe.3G289000' => 'ppe', 'Prupe.5G147000' => 'ppe', 'Prupe.6G157300' => 'ppe', 'Prupe.7G163400' => 'ppe', 'Psat0s2177g0040' => 'psa', 'Psat3g174760' => 'psa', 'Psat3g192160' => 'psa', 'Psat4g058520' => 'psa', 'Psat4g096840' => 'psa', 'Psat7g037320' => 'psa', 'PSO017G1274' => 'pso', 'PSO017G5166' => 'pso', 'PSO063G4558' => 'pso', 'PSO170G4458' => 'pso', 'PSO170G5005' => 'pso', 'PSO210G6156' => 'pso', 'PSO210G6635' => 'pso', 'PSO210G7397' => 'pso', 'PSO210G7700' => 'pso', 'PSO455G0035' => 'pso', 'PSO455G0180' => 'pso', 'PSO478G4515' => 'pso', 'PSO832G1305' => 'pso', 'PSO832G3489' => 'pso', 'QL02p075247' => 'qlo', 'QL03p051148' => 'qlo', 'QL05p010313' => 'qlo', 'QL06p034627' => 'qlo', 'QL10p001889' => 'qlo', 'QL10p010846' => 'qlo', 'RcHm_v2.0_Chr1g0350621' => 'rch', 'RcHm_v2.0_Chr1g0350641' => 'rch', 'RcHm_v2.0_Chr2g0092891' => 'rch', 'RcHm_v2.0_Chr2g0100251' => 'rch', 'RcHm_v2.0_Chr2g0158661' => 'rch', 'RcHm_v2.0_Chr2g0172741' => 'rch', 'RcHm_v2.0_Chr4g0429571' => 'rch', 'RcHm_v2.0_Chr5g0042471' => 'rch', 'RcHm_v2.0_Chr7g0189451' => 'rch', 'Rhsim08G0052000' => 'rsi', 'Rhsim08G0174400' => 'rsi', 'Rhsim08G0193200' => 'rsi', 'Rhsim10G0214800' => 'rsi', 'Rhsim10G0214900' => 'rsi', 'Rhsim10G0215000' => 'rsi', 'Rhsim12G0022900' => 'rsi', 'Rhsim12G0177500' => 'rsi', 'Rhsim12G0177700' => 'rsi', 'Sabra03G0122600' => 'sbr', 'Sabra05G0097400' => 'sbr', 'Sabra12G0064100' => 'sbr', 'Sabra15G0121300' => 'sbr', 'SalBow2G0642' => 'sbo', 'SalBow5G2667' => 'sbo', 'SalBow5G4873' => 'sbo', 'SalBow8G2395' => 'sbo', 'Sc03g0003290' => 'sci', 'Sc10g0010130' => 'sci', 'Sc22g0003650' => 'sci', 'Sed0001603' => 'sed', 'Sed0004259' => 'sed', 'Sed0006789' => 'sed', 'Sed0011838' => 'sed', 'Sed0012964' => 'sed', 'Sed0016383' => 'sed', 'Sed0019010' => 'sed', 'Sed0020188' => 'sed', 'SEGI_04702' => 'sgi', 'SEGI_17231' => 'sgi', 'SEGI_18877' => 'sgi', 'SEGI_25196' => 'sgi', 'SEGI_25515' => 'sgi', 'SEGI_28445' => 'sgi', 'SEGI_37452' => 'sgi', 'SGA_v2.0_scaffold188G40336' => 'sas', 'SGA_v2.0_scaffold228G43247' => 'sas', 'SGA_v2.0_scaffold280G46853' => 'sas', 'SGA_v2.0_scaffold34G13808' => 'sas', 'SGA_v2.0_scaffold40G15576' => 'sas', 'SGA_v2.0_scaffold611G53188' => 'sas', 'SGA_v2.0_scaffold78G25461' => 'sas', 'SGA_v2.0_scaffold90G27888' => 'sas', 'SHI08601' => 'shi', 'SHI08606' => 'shi', 'SHI17117' => 'shi', 'SHI17119' => 'shi', 'SMO118G0201' => 'smo', 'SMO169G0247' => 'smo', 'SMO176G0006' => 'smo', 'SMO176G0015' => 'smo', 'SMO202G0006' => 'smo', 'SMO240G0050' => 'smo', 'SMO286G0009' => 'smo', 'SMO338G0033' => 'smo', 'SMO356G0533' => 'smo', 'SMO364G0382' => 'smo', 'SMO367G0166' => 'smo', 'SMO367G1098' => 'smo', 'Solyc01g009920.3' => 'sly', 'Solyc01g099300.3' => 'sly', 'Solyc02g084700.3' => 'sly', 'Solyc03g097520.3' => 'sly', 'Solyc06g071580.3' => 'sly', 'Solyc10g081760.3' => 'sly', 'Sopen01g005480' => 'spe', 'Sopen01g042850' => 'spe', 'Sopen02g029370' => 'spe', 'Sopen03g028280' => 'spe', 'Sopen06g027870' => 'spe', 'Sopen10g032270' => 'spe', 'Sp5g18180' => 'spa', 'Sp6g12880' => 'spa', 'Sp6g30850' => 'spa', 'Sp7g22960' => 'spa', 'Sp7g34010' => 'spa', 'SpUn1326_0010' => 'spa', 'TAR371G0242' => 'tar', 'TAR622G0638' => 'tar', 'TAR628G1548' => 'tar', 'TAR629G1079' => 'tar', 'TAR629G3413' => 'tar', 'THA.LOC104804249' => 'tha', 'THA.LOC104808315' => 'tha', 'THA.LOC104809238' => 'tha', 'THA.LOC104825484' => 'tha', 'Thecc.01G025500' => 'tca', 'Thecc.03G015800' => 'tca', 'Thecc.03G018000' => 'tca', 'Thecc.03G134800' => 'tca', 'Thecc.04G014700' => 'tca', 'Thhalv10006991m.g' => 'esa', 'Thhalv10012707m.g' => 'esa', 'Thhalv10015739m.g' => 'esa', 'Thhalv10024553m.g' => 'esa', 'Thhalv10024673m.g' => 'esa', 'Thhalv10029187m.g' => 'esa', 'TPR.G12971' => 'tpr', 'TPR.G29396' => 'tpr', 'TPR.G33376' => 'tpr', 'TPR.G35508' => 'tpr', 'TPR.G35516' => 'tpr', 'TPR.G37317' => 'tpr', 'TPR.G37389' => 'tpr', 'TPR.G37523' => 'tpr', 'TPR.G559' => 'tpr', 'TWI14G0070' => 'twi', 'TWI14G0729' => 'twi', 'TWI18G0596' => 'twi', 'TWI39G0780' => 'twi', 'TWI39G0850' => 'twi', 'TWI73G1052' => 'twi', 'unitig_52.g17485' => 'ugi', 'unitig_61.g26355' => 'ugi', 'vmacro01040' => 'vma', 'vmacro16731' => 'vma', 'vmacro18270' => 'vma', 'vmacro19142' => 'vma', 'vmacro19407' => 'vma', 'vmacro19408' => 'vma', 'vmacro21899' => 'vma', 'vmacro21900' => 'vma', 'vmacro21901' => 'vma', 'VMungo0251G0490' => 'vmu', 'VMungo0251G1748' => 'vmu', 'VMungo1309G0421' => 'vmu', 'Zm00001eb086500' => 'zma', 'Zm00001eb150680' => 'zma', 'Zm00001eb162330' => 'zma', 'Zm00001eb203130' => 'zma', 'Zm00001eb369480' => 'zma', 'Zm00001eb382340' => 'zma', 'Zm00001eb416360' => 'zma' ) $gf_id = 'HOM05D000902' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000902' ) $data_identifier = 'HOM05D000902' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 13, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 10, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 6, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 9, 'hma' => (int) 12, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 4, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 6, 'ppa' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 6, 'rch' => (int) 9, 'rsi' => (int) 9, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 12, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 3, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416360' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000902', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '663', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02470' => 'bna', 'A01p16260' => 'bna', 'A02p01680' => 'bna', 'A03p16600' => 'bna', 'A03p55660' => 'bna', 'A03p64160' => 'bna', 'A03p64170' => 'bna', 'A08p31900' => 'bna', 'A09p59530' => 'bna', 'A10p08230' => 'bna', 'A10p25090' => 'bna', 'Aa31LG3G7100' => 'aar', 'Aa31LG3G7110' => 'aar', 'Aa31LG6G13160' => 'aar', 'Aa31LG7G10770' => 'aar', 'Aa31LG7G3830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2723' => 'aag', 'Actinidia08045' => 'ach', 'Actinidia08888' => 'ach', 'Actinidia18333' => 'ach', 'Actinidia19334' => 'ach', 'Actinidia25552' => 'ach', 'Actinidia26089' => 'ach', 'Actinidia30615' => 'ach', 'Actinidia30616' => 'ach', 'Actinidia33083' => 'ach', 'Actinidia35762' => 'ach', 'Ah.02g110620' => 'amhyb', 'Ah.11g046390' => 'amhyb', 'AL1G31670' => 'aly', 'AL6G23730' => 'aly', 'AL7G14740' => 'aly', 'AL7G14750' => 'aly', 'AL7G14760' => 'aly', 'AL7G28220' => 'aly', 'AL8G24940' => 'aly', 'Aqoxy3G01665' => 'aox', 'Aqoxy3G02853' => 'aox', 'Aqoxy5G01513' => 'aox', 'Aqoxy5G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8SKA4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ75LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKDA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0LJZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7REX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZP4YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWX7I5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2QKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS0L9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPCD8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q161UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC7XCF' => 'arhy', 'AT1G19100' => 'ath', 'AT4G24970' => 'ath', 'AT4G36270' => 'ath', 'AT4G36280' => 'ath', 'AT4G36290' => 'ath', 'AT5G13130' => 'ath', 'AT5G50780' => 'ath', 'ATR0582G266' => 'atr', 'ATR0661G195' => 'atr', 'ATR1152G031' => 'atr', 'Atru.chr11.2382' => 'acertr', 'Atru.chr12.2337' => 'acertr', 'Atru.chr3.744' => 'acertr', 'Atru.chr6.1870' => 'acertr', 'Atru.chr9.2515' => 'acertr', 'AUR62004120' => 'cqu', 'AUR62005667' => 'cqu', 'AUR62007634' => 'cqu', 'AUR62008186' => 'cqu', 'AUR62008187' => 'cqu', 'AUR62008188' => 'cqu', 'AUR62027954' => 'cqu', 'AUR62028766' => 'cqu', 'AUR62028767' => 'cqu', 'AUR62028768' => 'cqu', 'AUR62028886' => 'cqu', 'AUR62029563' => 'cqu', 'AUR62038832' => 'cqu', 'BcaB01g04149' => 'bca', 'BcaB03g12940' => 'bca', 'BcaB03g13090' => 'bca', 'BcaB03g14466' => 'bca', 'BcaB05g24035' => 'bca', 'BcaC01g06050' => 'bca', 'BcaC04g19148' => 'bca', 'BcaC04g20761' => 'bca', 'BcaC06g32845' => 'bca', 'BcaC07g41274' => 'bca', 'BcaC09g50827' => 'bca', 'BcaNung00741' => 'bca', 'BcaNung00742' => 'bca', 'BcaNung01859' => 'bca', 'BcaNung03985' => 'bca', 'BcaNung03989' => 'bca', 'BcaNung05661' => 'bca', 'BolC1t00257H' => 'bol', 'BolC1t01956H' => 'bol', 'BolC2t06534H' => 'bol', 'BolC3t14334H' => 'bol', 'BolC5t30451H' => 'bol', 'BolC7t45880H' => 'bol', 'BolC7t46586H' => 'bol', 'BolC8t49301H' => 'bol', 'BolC8t51837H' => 'bol', 'BolC9t56822H' => 'bol', 'BolC9t59235H' => 'bol', 'BraA01t00234Z' => 'bra', 'BraA01t01563Z' => 'bra', 'BraA02t05147Z' => 'bra', 'BraA03t10947Z' => 'bra', 'BraA03t14633Z' => 'bra', 'BraA08t35112Z' => 'bra', 'BraA09t41330Z' => 'bra', 'BraA10t44570Z' => 'bra', 'C01p02670' => 'bna', 'C01p20260' => 'bna', 'C02p05890' => 'bna', 'C03p19530' => 'bna', 'C05p17470' => 'bna', 'C07p53900' => 'bna', 'C07p61630' => 'bna', 'C08p16800' => 'bna', 'C08p42810' => 'bna', 'C09p39480' => 'bna', 'C09p63980' => 'bna', 'CAN.G1001.7' => 'can', 'CAN.G1034.55' => 'can', 'CAN.G143.7' => 'can', 'CAN.G3340.1' => 'can', 'CAN.G358.19' => 'can', 'CAN.G373.2' => 'can', 'CAN.G674.16' => 'can', 'CAN.G674.17' => 'can', 'CAN.G674.18' => 'can', 'CAN.G732.2' => 'can', 'CAN.G732.3' => 'can', 'CAN.G993.39' => 'can', 'CANSAT01G2052' => 'cansat', 'CANSAT80G0070' => 'cansat', 'CANSAT80G0483' => 'cansat', 'CANSAT80G0625' => 'cansat', 'CARHR019690' => 'chi', 'CARHR080280' => 'chi', 'CARHR152750' => 'chi', 'CARHR152760' => 'chi', 'CARHR152770' => 'chi', 'CARHR200340' => 'chi', 'CARHR232370' => 'chi', 'CARHR244670' => 'chi', 'CARHR244680' => 'chi', 'CARHR257520' => 'chi', 'Carub.0001s1872' => 'cru', 'Carub.0006s1130' => 'cru', 'Carub.0007s0396' => 'cru', 'Carub.0007s0397' => 'cru', 'Carub.0007s1608' => 'cru', 'Carub.0008s1068' => 'cru', 'Carub.0008s1077' => 'cru', 'Ca_16158_v3' => 'car', 'Ca_17571_v3' => 'car', 'Ca_21936_v3' => 'car', 'Ca_22350_v3' => 'car', 'CBR_g22445' => 'cbr', 'CBR_g26290' => 'cbr', 'Cc04_g09610' => 'ccan', 'Cc04_g12280' => 'ccan', 'Cc07_g10230' => 'ccan', 'CDE02G0093' => 'cde', 'CDE02G0701' => 'cde', 'CDE04G1050' => 'cde', 'CDE05G1833' => 'cde', 'CDE05G3058' => 'cde', 'CDE05G3380' => 'cde', 'CDE06G0536' => 'cde', 'Cfa006923' => 'cfa', 'Cfa009402' => 'cfa', 'Cfa018751' => 'cfa', 'Cfa019164' => 'cfa', 'Cfa022935' => 'cfa', 'Ciclev10019081m.g' => 'ccl', 'Ciclev10025076m.g' => 'ccl', 'Ciclev10030712m.g' => 'ccl', 'Ciclev10033760m.g' => 'ccl', 'CiPaw.05G105600' => 'cil', 'CiPaw.08G136700' => 'cil', 'CiPaw.11G003900' => 'cil', 'CiPaw.11G023700' => 'cil', 'CiPaw.12G003700' => 'cil', 'ClCG06G017100' => 'cla', 'ClCG06G018110' => 'cla', 'ClCG07G008800' => 'cla', 'ClCG07G015330' => 'cla', 'COL.COLO4_13698' => 'col', 'COL.COLO4_16659' => 'col', 'COL.COLO4_21986' => 'col', 'COL.COLO4_24049' => 'col', 'COL.COLO4_29061' => 'col', 'COL.COLO4_29075' => 'col', 'COL.COLO4_30094' => 'col', 'Cpa.g.c33689' => 'cpa', 'Cpa.g.sc108.39' => 'cpa', 'Cpa.g.sc108.41' => 'cpa', 'Cpa.g.sc1163.1' => 'cpa', 'Cpa.g.sc4.155' => 'cpa', 'Cpa.g.sc6.194' => 'cpa', 'CsaV3_1G000340' => 'csa', 'CsaV3_1G001400' => 'csa', 'CsaV3_4G002220' => 'csa', 'CsaV3_4G005370' => 'csa', 'CSS0007487' => 'camsi', 'CSS0008066' => 'camsi', 'CSS0009120' => 'camsi', 'CSS0015512' => 'camsi', 'CSS0022409' => 'camsi', 'CSS0025358' => 'camsi', 'CSS0044547' => 'camsi', 'DCAR_013057' => 'dca', 'DCAR_015058' => 'dca', 'DCAR_016027' => 'dca', 'DCAR_017327' => 'dca', 'DCAR_020743' => 'dca', 'DCAR_026157' => 'dca', 'DCAR_032339' => 'dca', 'DCAR_032340' => 'dca', 'Dinv11200' => 'din', 'Dinv11201' => 'din', 'Dinv20631' => 'din', 'Dinv23182' => 'din', 'Dinv33466' => 'din', 'Dinv33583' => 'din', 'Dinv38565' => 'din', 'Duzib068G0200' => 'dzi', 'Duzib147G0132' => 'dzi', 'Duzib147G0635' => 'dzi', 'Duzib205G1670' => 'dzi', 'Duzib251G0606' => 'dzi', 'ECA232G3336' => 'eca', 'ECA232G3763' => 'eca', 'ECA232G4845' => 'eca', 'ECA234G1607' => 'eca', 'ECA246G0932' => 'eca', 'ECA247G0781' => 'eca', 'ECA247G1932' => 'eca', 'ECA247G2079' => 'eca', 'ECA247G3338' => 'eca', 'ECA247G4115' => 'eca', 'EL10Ac3g06552' => 'bvu', 'EL10Ac5g10721' => 'bvu', 'EL10Ac5g10722' => 'bvu', 'EL10Ac5g10723' => 'bvu', 'EL10Ac5g11361' => 'bvu', 'EL10Ac6g13553' => 'bvu', 'EL10As8g23872' => 'bvu', 'Eucgr.B00250' => 'egr', 'Eucgr.B00251' => 'egr', 'Eucgr.B03533' => 'egr', 'Eucgr.I02381' => 'egr', 'Eucgr.K02700' => 'egr', 'FAN02G0174' => 'fan', 'FAN02G3146' => 'fan', 'FAN04G1672' => 'fan', 'FAN04G2273' => 'fan', 'FAN05G2791' => 'fan', 'FAN05G4035' => 'fan', 'FAN07G0834' => 'fan', 'FAN08G1198' => 'fan', 'FAN09G4182' => 'fan', 'FAN12G0496' => 'fan', 'FAN13G1027' => 'fan', 'FAN13G2951' => 'fan', 'FAN14G0705' => 'fan', 'FAN14G0720' => 'fan', 'FAN17G0201' => 'fan', 'FAN17G2665' => 'fan', 'FAN18G1456' => 'fan', 'FAN18G1525' => 'fan', 'FAN18G3500' => 'fan', 'FAN28G2670' => 'fan', 'FvH4_1g12391' => 'fve', 'FvH4_4g23220' => 'fve', 'FvH4_5g08810' => 'fve', 'FvH4_5g28960' => 'fve', 'FvH4_6g42820' => 'fve', 'FvH4_6g51110' => 'fve', 'Glyma.02G051802' => 'gma', 'Glyma.04G185300' => 'gma', 'Glyma.05G202900' => 'gma', 'Glyma.08G010300' => 'gma', 'Glyma.16G131900' => 'gma', 'Glyma.17G087900' => 'gma', 'Gohir.A07G048600' => 'ghi', 'Gohir.A11G179000' => 'ghi', 'Gohir.A12G140900' => 'ghi', 'Gohir.A12G140950' => 'ghi', 'Gohir.A12G191700' => 'ghi', 'Gohir.A13G086300' => 'ghi', 'Gohir.D07G052900' => 'ghi', 'Gohir.D11G186600' => 'ghi', 'Gohir.D12G145575' => 'ghi', 'Gohir.D12G145650' => 'ghi', 'Gohir.D12G145725' => 'ghi', 'Gohir.D12G194050' => 'ghi', 'Gohir.D13G091800' => 'ghi', 'Gorai.001G055900' => 'gra', 'Gorai.007G198400' => 'gra', 'Gorai.008G157000' => 'gra', 'Gorai.008G157100' => 'gra', 'Gorai.008G208700' => 'gra', 'Gorai.010G138700' => 'gra', 'GSVIVG01000977001' => 'vvi', 'GSVIVG01007708001' => 'vvi', 'GSVIVG01008587001' => 'vvi', 'GSVIVG01018849001' => 'vvi', 'GSVIVG01032432001' => 'vvi', 'HanXRQChr02g0034131' => 'han', 'HanXRQChr02g0035981' => 'han', 'HanXRQChr02g0035991' => 'han', 'HanXRQChr05g0155611' => 'han', 'HanXRQChr05g0155621' => 'han', 'HanXRQChr08g0236501' => 'han', 'HanXRQChr09g0261321' => 'han', 'HanXRQChr09g0272081' => 'han', 'HanXRQChr10g0310741' => 'han', 'HanXRQChr11g0325591' => 'han', 'HanXRQChr12g0385691' => 'han', 'HanXRQChr13g0387801' => 'han', 'HanXRQChr15g0463011' => 'han', 'Haze_03826' => 'cav', 'Haze_03827' => 'cav', 'Haze_07183' => 'cav', 'Haze_07537' => 'cav', 'Haze_07539' => 'cav', 'Haze_12461' => 'cav', 'Haze_16115' => 'cav', 'Haze_16808' => 'cav', 'Haze_18531' => 'cav', 'Hma1.2p1_0046F.1_g026700' => 'hma', 'Hma1.2p1_0046F.1_g026710' => 'hma', 'Hma1.2p1_0168F.1_g074340' => 'hma', 'Hma1.2p1_0266F.1_g107030' => 'hma', 'Hma1.2p1_0266F.1_g107060' => 'hma', 'Hma1.2p1_0275F.1_g110510' => 'hma', 'Hma1.2p1_0592F.1_g185490' => 'hma', 'Hma1.2p1_0592F.1_g185500' => 'hma', 'Hma1.2p1_0592F.1_g185510' => 'hma', 'Hma1.2p1_0592F.1_g185520' => 'hma', 'Hma1.2p1_0592F.1_g185530' => 'hma', 'Hma1.2p1_0818F.1_g223450' => 'hma', 'HPP92_009708' => 'vpl', 'HPP92_009793' => 'vpl', 'HPP92_009796' => 'vpl', 'HPP92_009797' => 'vpl', 'HPP92_014940' => 'vpl', 'HPP92_014988' => 'vpl', 'Hund02463' => 'sun', 'Hund02760' => 'sun', 'Hund05071' => 'sun', 'Hund10108' => 'sun', 'Hund11204' => 'sun', 'Hund14016' => 'sun', 'Hund16464' => 'sun', 'Lalb_Chr09g0333391' => 'lal', 'Lalb_Chr11g0070461' => 'lal', 'Lalb_Chr12g0201671' => 'lal', 'Lalb_Chr13g0297161' => 'lal', 'Lj1g0002823' => 'lja', 'Lj3C1074T6' => 'lonja', 'Lj4A212T28' => 'lonja', 'Lj4g0005516' => 'lja', 'Lj4g0013705' => 'lja', 'Lj4g0027865' => 'lja', 'Lj5C92G16' => 'lonja', 'Lj5C92T12' => 'lonja', 'Lj7C596T3' => 'lonja', 'Lj9A446G59' => 'lonja', 'Lj9A482G21' => 'lonja', 'Lsat_1_v5_gn_1_28261' => 'lsa', 'Lsat_1_v5_gn_1_28281' => 'lsa', 'Lsat_1_v5_gn_1_32721' => 'lsa', 'Lsat_1_v5_gn_4_151760' => 'lsa', 'Lsat_1_v5_gn_4_2120' => 'lsa', 'Lsat_1_v5_gn_4_75761' => 'lsa', 'Lsat_1_v5_gn_5_10920' => 'lsa', 'Manes.02G099900' => 'mes', 'Manes.11G096200' => 'mes', 'Manes.12G007200' => 'mes', 'Manes.14G048300' => 'mes', 'Manes.17G114700' => 'mes', 'Mapoly0002s0070' => 'mpo', 'Mapoly0029s0099' => 'mpo', 'MBI07_g24742_MAGBIO' => 'mbi', 'MBI10_g27988_MAGBIO' => 'mbi', 'MBI11_g13057_MAGBIO' => 'mbi', 'MD02G1137200' => 'mdo', 'MD06G1137200' => 'mdo', 'MD07G1122300' => 'mdo', 'MD09G1078200' => 'mdo', 'MD13G1123700' => 'mdo', 'MD14G1151900' => 'mdo', 'MD17G1030900' => 'mdo', 'MD17G1068200' => 'mdo', 'MD17G1068600' => 'mdo', 'Medtr3g077540' => 'mtr', 'Medtr4g105530' => 'mtr', 'Medtr8g076580' => 'mtr', 'Medtr8g076590' => 'mtr', 'Medtr8g096410' => 'mtr', 'MELO3C016411.2' => 'cme', 'MELO3C017780.2' => 'cme', 'MELO3C022560.2' => 'cme', 'MELO3C026187.2' => 'cme', 'MELO3C026286.2' => 'cme', 'MELO3C032854.2' => 'cme', 'Migut.H02495' => 'egut', 'Migut.I00561' => 'egut', 'Migut.K01015' => 'egut', 'Migut.K01016' => 'egut', 'Migut.L00743' => 'egut', 'Migut.L00744' => 'egut', 'Migut.L00746' => 'egut', 'Migut.L00798' => 'egut', 'Migut.L00799' => 'egut', 'Migut.N02096' => 'egut', 'MSTRG.11259' => 'ama', 'MSTRG.23142' => 'ama', 'MSTRG.2499' => 'ama', 'Nitab4.5_0000003g0730' => 'nta', 'Nitab4.5_0000137g0020' => 'nta', 'Nitab4.5_0000721g0210' => 'nta', 'Nitab4.5_0000723g0050' => 'nta', 'Nitab4.5_0000913g0070' => 'nta', 'Nitab4.5_0001332g0040' => 'nta', 'Nitab4.5_0001771g0050' => 'nta', 'Nitab4.5_0001918g0050' => 'nta', 'Nitab4.5_0002686g0030' => 'nta', 'Nitab4.5_0003156g0020' => 'nta', 'Nitab4.5_0003383g0040' => 'nta', 'Nitab4.5_0003918g0010' => 'nta', 'Nitab4.5_0006760g0010' => 'nta', 'Nn1g05981' => 'nnu', 'Nn1g06288' => 'nnu', 'Nn3g16371' => 'nnu', 'Nn3g16786' => 'nnu', 'Nn4g22232' => 'nnu', 'Oeu005144.1' => 'oeu', 'Oeu005145.1' => 'oeu', 'Oeu011348.1' => 'oeu', 'Oeu016415.1' => 'oeu', 'Oeu023501.1' => 'oeu', 'Oeu044473.1' => 'oeu', 'Oeu048892.2' => 'oeu', 'Os01g0549200' => 'osa', 'Os02g0469300' => 'osa', 'Os04g0311100' => 'osa', 'Os06g0474900' => 'osa', 'Os10g0181700' => 'osa', 'Os11g0454800' => 'osa', 'Peaxi162Scf00037g00714' => 'pax', 'Peaxi162Scf00084g01217' => 'pax', 'Peaxi162Scf00257g00217' => 'pax', 'Peaxi162Scf00516g00215' => 'pax', 'Peaxi162Scf00689g00123' => 'pax', 'PGR044G2719' => 'pgr', 'PGR083G1360' => 'pgr', 'PGR102G2849' => 'pgr', 'PGR119G2534' => 'pgr', 'PGSC0003DMG400003538' => 'stu', 'PGSC0003DMG400028138' => 'stu', 'PGSC0003DMG400031732' => 'stu', 'PGSC0003DMG400038165' => 'stu', 'Phvul.002G284600' => 'pvu', 'Phvul.003G258200' => 'pvu', 'Phvul.009G176500' => 'pvu', 'Potri.003G167201' => 'ptr', 'Potri.005G118400' => 'ptr', 'Potri.012G089000' => 'ptr', 'Potri.012G102800' => 'ptr', 'Potri.015G079400' => 'ptr', 'Potri.015G100900' => 'ptr', 'Pp3c14_9810' => 'ppa', 'Pp3c15_10450' => 'ppa', 'Pp3c20_19150' => 'ppa', 'Pp3c23_12740' => 'ppa', 'Pp3c23_6310' => 'ppa', 'Pp3c24_3720' => 'ppa', 'Pp3c27_2580' => 'ppa', 'Pp3c9_8990' => 'ppa', 'PRCOL_00002854' => 'pco', 'Prupe.1G221200' => 'ppe', 'Prupe.3G289000' => 'ppe', 'Prupe.5G147000' => 'ppe', 'Prupe.6G157300' => 'ppe', 'Prupe.7G163400' => 'ppe', 'Psat0s2177g0040' => 'psa', 'Psat3g174760' => 'psa', 'Psat3g192160' => 'psa', 'Psat4g058520' => 'psa', 'Psat4g096840' => 'psa', 'Psat7g037320' => 'psa', 'PSO017G1274' => 'pso', 'PSO017G5166' => 'pso', 'PSO063G4558' => 'pso', 'PSO170G4458' => 'pso', 'PSO170G5005' => 'pso', 'PSO210G6156' => 'pso', 'PSO210G6635' => 'pso', 'PSO210G7397' => 'pso', 'PSO210G7700' => 'pso', 'PSO455G0035' => 'pso', 'PSO455G0180' => 'pso', 'PSO478G4515' => 'pso', 'PSO832G1305' => 'pso', 'PSO832G3489' => 'pso', 'QL02p075247' => 'qlo', 'QL03p051148' => 'qlo', 'QL05p010313' => 'qlo', 'QL06p034627' => 'qlo', 'QL10p001889' => 'qlo', 'QL10p010846' => 'qlo', 'RcHm_v2.0_Chr1g0350621' => 'rch', 'RcHm_v2.0_Chr1g0350641' => 'rch', 'RcHm_v2.0_Chr2g0092891' => 'rch', 'RcHm_v2.0_Chr2g0100251' => 'rch', 'RcHm_v2.0_Chr2g0158661' => 'rch', 'RcHm_v2.0_Chr2g0172741' => 'rch', 'RcHm_v2.0_Chr4g0429571' => 'rch', 'RcHm_v2.0_Chr5g0042471' => 'rch', 'RcHm_v2.0_Chr7g0189451' => 'rch', 'Rhsim08G0052000' => 'rsi', 'Rhsim08G0174400' => 'rsi', 'Rhsim08G0193200' => 'rsi', 'Rhsim10G0214800' => 'rsi', 'Rhsim10G0214900' => 'rsi', 'Rhsim10G0215000' => 'rsi', 'Rhsim12G0022900' => 'rsi', 'Rhsim12G0177500' => 'rsi', 'Rhsim12G0177700' => 'rsi', 'Sabra03G0122600' => 'sbr', 'Sabra05G0097400' => 'sbr', 'Sabra12G0064100' => 'sbr', 'Sabra15G0121300' => 'sbr', 'SalBow2G0642' => 'sbo', 'SalBow5G2667' => 'sbo', 'SalBow5G4873' => 'sbo', 'SalBow8G2395' => 'sbo', 'Sc03g0003290' => 'sci', 'Sc10g0010130' => 'sci', 'Sc22g0003650' => 'sci', 'Sed0001603' => 'sed', 'Sed0004259' => 'sed', 'Sed0006789' => 'sed', 'Sed0011838' => 'sed', 'Sed0012964' => 'sed', 'Sed0016383' => 'sed', 'Sed0019010' => 'sed', 'Sed0020188' => 'sed', 'SEGI_04702' => 'sgi', 'SEGI_17231' => 'sgi', 'SEGI_18877' => 'sgi', 'SEGI_25196' => 'sgi', 'SEGI_25515' => 'sgi', 'SEGI_28445' => 'sgi', 'SEGI_37452' => 'sgi', 'SGA_v2.0_scaffold188G40336' => 'sas', 'SGA_v2.0_scaffold228G43247' => 'sas', 'SGA_v2.0_scaffold280G46853' => 'sas', 'SGA_v2.0_scaffold34G13808' => 'sas', 'SGA_v2.0_scaffold40G15576' => 'sas', 'SGA_v2.0_scaffold611G53188' => 'sas', 'SGA_v2.0_scaffold78G25461' => 'sas', 'SGA_v2.0_scaffold90G27888' => 'sas', 'SHI08601' => 'shi', 'SHI08606' => 'shi', 'SHI17117' => 'shi', 'SHI17119' => 'shi', 'SMO118G0201' => 'smo', 'SMO169G0247' => 'smo', 'SMO176G0006' => 'smo', 'SMO176G0015' => 'smo', 'SMO202G0006' => 'smo', 'SMO240G0050' => 'smo', 'SMO286G0009' => 'smo', 'SMO338G0033' => 'smo', 'SMO356G0533' => 'smo', 'SMO364G0382' => 'smo', 'SMO367G0166' => 'smo', 'SMO367G1098' => 'smo', 'Solyc01g009920.3' => 'sly', 'Solyc01g099300.3' => 'sly', 'Solyc02g084700.3' => 'sly', 'Solyc03g097520.3' => 'sly', 'Solyc06g071580.3' => 'sly', 'Solyc10g081760.3' => 'sly', 'Sopen01g005480' => 'spe', 'Sopen01g042850' => 'spe', 'Sopen02g029370' => 'spe', 'Sopen03g028280' => 'spe', 'Sopen06g027870' => 'spe', 'Sopen10g032270' => 'spe', 'Sp5g18180' => 'spa', 'Sp6g12880' => 'spa', 'Sp6g30850' => 'spa', 'Sp7g22960' => 'spa', 'Sp7g34010' => 'spa', 'SpUn1326_0010' => 'spa', 'TAR371G0242' => 'tar', 'TAR622G0638' => 'tar', 'TAR628G1548' => 'tar', 'TAR629G1079' => 'tar', 'TAR629G3413' => 'tar', 'THA.LOC104804249' => 'tha', 'THA.LOC104808315' => 'tha', 'THA.LOC104809238' => 'tha', 'THA.LOC104825484' => 'tha', 'Thecc.01G025500' => 'tca', 'Thecc.03G015800' => 'tca', 'Thecc.03G018000' => 'tca', 'Thecc.03G134800' => 'tca', 'Thecc.04G014700' => 'tca', 'Thhalv10006991m.g' => 'esa', 'Thhalv10012707m.g' => 'esa', 'Thhalv10015739m.g' => 'esa', 'Thhalv10024553m.g' => 'esa', 'Thhalv10024673m.g' => 'esa', 'Thhalv10029187m.g' => 'esa', 'TPR.G12971' => 'tpr', 'TPR.G29396' => 'tpr', 'TPR.G33376' => 'tpr', 'TPR.G35508' => 'tpr', 'TPR.G35516' => 'tpr', 'TPR.G37317' => 'tpr', 'TPR.G37389' => 'tpr', 'TPR.G37523' => 'tpr', 'TPR.G559' => 'tpr', 'TWI14G0070' => 'twi', 'TWI14G0729' => 'twi', 'TWI18G0596' => 'twi', 'TWI39G0780' => 'twi', 'TWI39G0850' => 'twi', 'TWI73G1052' => 'twi', 'unitig_52.g17485' => 'ugi', 'unitig_61.g26355' => 'ugi', 'vmacro01040' => 'vma', 'vmacro16731' => 'vma', 'vmacro18270' => 'vma', 'vmacro19142' => 'vma', 'vmacro19407' => 'vma', 'vmacro19408' => 'vma', 'vmacro21899' => 'vma', 'vmacro21900' => 'vma', 'vmacro21901' => 'vma', 'VMungo0251G0490' => 'vmu', 'VMungo0251G1748' => 'vmu', 'VMungo1309G0421' => 'vmu', 'Zm00001eb086500' => 'zma', 'Zm00001eb150680' => 'zma', 'Zm00001eb162330' => 'zma', 'Zm00001eb203130' => 'zma', 'Zm00001eb369480' => 'zma', 'Zm00001eb382340' => 'zma', 'Zm00001eb416360' => 'zma' ), 'gf_id' => 'HOM05D000902', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000902' ), 'data_identifier' => 'HOM05D000902', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000902', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '663', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02470' => 'bna', 'A01p16260' => 'bna', 'A02p01680' => 'bna', 'A03p16600' => 'bna', 'A03p55660' => 'bna', 'A03p64160' => 'bna', 'A03p64170' => 'bna', 'A08p31900' => 'bna', 'A09p59530' => 'bna', 'A10p08230' => 'bna', 'A10p25090' => 'bna', 'Aa31LG3G7100' => 'aar', 'Aa31LG3G7110' => 'aar', 'Aa31LG6G13160' => 'aar', 'Aa31LG7G10770' => 'aar', 'Aa31LG7G3830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2723' => 'aag', 'Actinidia08045' => 'ach', 'Actinidia08888' => 'ach', 'Actinidia18333' => 'ach', 'Actinidia19334' => 'ach', 'Actinidia25552' => 'ach', 'Actinidia26089' => 'ach', 'Actinidia30615' => 'ach', 'Actinidia30616' => 'ach', 'Actinidia33083' => 'ach', 'Actinidia35762' => 'ach', 'Ah.02g110620' => 'amhyb', 'Ah.11g046390' => 'amhyb', 'AL1G31670' => 'aly', 'AL6G23730' => 'aly', 'AL7G14740' => 'aly', 'AL7G14750' => 'aly', 'AL7G14760' => 'aly', 'AL7G28220' => 'aly', 'AL8G24940' => 'aly', 'Aqoxy3G01665' => 'aox', 'Aqoxy3G02853' => 'aox', 'Aqoxy5G01513' => 'aox', 'Aqoxy5G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8SKA4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ75LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKDA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0LJZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7REX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZP4YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWX7I5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2QKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS0L9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPCD8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q161UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC7XCF' => 'arhy', 'AT1G19100' => 'ath', 'AT4G24970' => 'ath', 'AT4G36270' => 'ath', 'AT4G36280' => 'ath', 'AT4G36290' => 'ath', 'AT5G13130' => 'ath', 'AT5G50780' => 'ath', 'ATR0582G266' => 'atr', 'ATR0661G195' => 'atr', 'ATR1152G031' => 'atr', 'Atru.chr11.2382' => 'acertr', 'Atru.chr12.2337' => 'acertr', 'Atru.chr3.744' => 'acertr', 'Atru.chr6.1870' => 'acertr', 'Atru.chr9.2515' => 'acertr', 'AUR62004120' => 'cqu', 'AUR62005667' => 'cqu', 'AUR62007634' => 'cqu', 'AUR62008186' => 'cqu', 'AUR62008187' => 'cqu', 'AUR62008188' => 'cqu', 'AUR62027954' => 'cqu', 'AUR62028766' => 'cqu', 'AUR62028767' => 'cqu', 'AUR62028768' => 'cqu', 'AUR62028886' => 'cqu', 'AUR62029563' => 'cqu', 'AUR62038832' => 'cqu', 'BcaB01g04149' => 'bca', 'BcaB03g12940' => 'bca', 'BcaB03g13090' => 'bca', 'BcaB03g14466' => 'bca', 'BcaB05g24035' => 'bca', 'BcaC01g06050' => 'bca', 'BcaC04g19148' => 'bca', 'BcaC04g20761' => 'bca', 'BcaC06g32845' => 'bca', 'BcaC07g41274' => 'bca', 'BcaC09g50827' => 'bca', 'BcaNung00741' => 'bca', 'BcaNung00742' => 'bca', 'BcaNung01859' => 'bca', 'BcaNung03985' => 'bca', 'BcaNung03989' => 'bca', 'BcaNung05661' => 'bca', 'BolC1t00257H' => 'bol', 'BolC1t01956H' => 'bol', 'BolC2t06534H' => 'bol', 'BolC3t14334H' => 'bol', 'BolC5t30451H' => 'bol', 'BolC7t45880H' => 'bol', 'BolC7t46586H' => 'bol', 'BolC8t49301H' => 'bol', 'BolC8t51837H' => 'bol', 'BolC9t56822H' => 'bol', 'BolC9t59235H' => 'bol', 'BraA01t00234Z' => 'bra', 'BraA01t01563Z' => 'bra', 'BraA02t05147Z' => 'bra', 'BraA03t10947Z' => 'bra', 'BraA03t14633Z' => 'bra', 'BraA08t35112Z' => 'bra', 'BraA09t41330Z' => 'bra', 'BraA10t44570Z' => 'bra', 'C01p02670' => 'bna', 'C01p20260' => 'bna', 'C02p05890' => 'bna', 'C03p19530' => 'bna', 'C05p17470' => 'bna', 'C07p53900' => 'bna', 'C07p61630' => 'bna', 'C08p16800' => 'bna', 'C08p42810' => 'bna', 'C09p39480' => 'bna', 'C09p63980' => 'bna', 'CAN.G1001.7' => 'can', 'CAN.G1034.55' => 'can', 'CAN.G143.7' => 'can', 'CAN.G3340.1' => 'can', 'CAN.G358.19' => 'can', 'CAN.G373.2' => 'can', 'CAN.G674.16' => 'can', 'CAN.G674.17' => 'can', 'CAN.G674.18' => 'can', 'CAN.G732.2' => 'can', 'CAN.G732.3' => 'can', 'CAN.G993.39' => 'can', 'CANSAT01G2052' => 'cansat', 'CANSAT80G0070' => 'cansat', 'CANSAT80G0483' => 'cansat', 'CANSAT80G0625' => 'cansat', 'CARHR019690' => 'chi', 'CARHR080280' => 'chi', 'CARHR152750' => 'chi', 'CARHR152760' => 'chi', 'CARHR152770' => 'chi', 'CARHR200340' => 'chi', 'CARHR232370' => 'chi', 'CARHR244670' => 'chi', 'CARHR244680' => 'chi', 'CARHR257520' => 'chi', 'Carub.0001s1872' => 'cru', 'Carub.0006s1130' => 'cru', 'Carub.0007s0396' => 'cru', 'Carub.0007s0397' => 'cru', 'Carub.0007s1608' => 'cru', 'Carub.0008s1068' => 'cru', 'Carub.0008s1077' => 'cru', 'Ca_16158_v3' => 'car', 'Ca_17571_v3' => 'car', 'Ca_21936_v3' => 'car', 'Ca_22350_v3' => 'car', 'CBR_g22445' => 'cbr', 'CBR_g26290' => 'cbr', 'Cc04_g09610' => 'ccan', 'Cc04_g12280' => 'ccan', 'Cc07_g10230' => 'ccan', 'CDE02G0093' => 'cde', 'CDE02G0701' => 'cde', 'CDE04G1050' => 'cde', 'CDE05G1833' => 'cde', 'CDE05G3058' => 'cde', 'CDE05G3380' => 'cde', 'CDE06G0536' => 'cde', 'Cfa006923' => 'cfa', 'Cfa009402' => 'cfa', 'Cfa018751' => 'cfa', 'Cfa019164' => 'cfa', 'Cfa022935' => 'cfa', 'Ciclev10019081m.g' => 'ccl', 'Ciclev10025076m.g' => 'ccl', 'Ciclev10030712m.g' => 'ccl', 'Ciclev10033760m.g' => 'ccl', 'CiPaw.05G105600' => 'cil', 'CiPaw.08G136700' => 'cil', 'CiPaw.11G003900' => 'cil', 'CiPaw.11G023700' => 'cil', 'CiPaw.12G003700' => 'cil', 'ClCG06G017100' => 'cla', 'ClCG06G018110' => 'cla', 'ClCG07G008800' => 'cla', 'ClCG07G015330' => 'cla', 'COL.COLO4_13698' => 'col', 'COL.COLO4_16659' => 'col', 'COL.COLO4_21986' => 'col', 'COL.COLO4_24049' => 'col', 'COL.COLO4_29061' => 'col', 'COL.COLO4_29075' => 'col', 'COL.COLO4_30094' => 'col', 'Cpa.g.c33689' => 'cpa', 'Cpa.g.sc108.39' => 'cpa', 'Cpa.g.sc108.41' => 'cpa', 'Cpa.g.sc1163.1' => 'cpa', 'Cpa.g.sc4.155' => 'cpa', 'Cpa.g.sc6.194' => 'cpa', 'CsaV3_1G000340' => 'csa', 'CsaV3_1G001400' => 'csa', 'CsaV3_4G002220' => 'csa', 'CsaV3_4G005370' => 'csa', 'CSS0007487' => 'camsi', 'CSS0008066' => 'camsi', 'CSS0009120' => 'camsi', 'CSS0015512' => 'camsi', 'CSS0022409' => 'camsi', 'CSS0025358' => 'camsi', 'CSS0044547' => 'camsi', 'DCAR_013057' => 'dca', 'DCAR_015058' => 'dca', 'DCAR_016027' => 'dca', 'DCAR_017327' => 'dca', 'DCAR_020743' => 'dca', 'DCAR_026157' => 'dca', 'DCAR_032339' => 'dca', 'DCAR_032340' => 'dca', 'Dinv11200' => 'din', 'Dinv11201' => 'din', 'Dinv20631' => 'din', 'Dinv23182' => 'din', 'Dinv33466' => 'din', 'Dinv33583' => 'din', 'Dinv38565' => 'din', 'Duzib068G0200' => 'dzi', 'Duzib147G0132' => 'dzi', 'Duzib147G0635' => 'dzi', 'Duzib205G1670' => 'dzi', 'Duzib251G0606' => 'dzi', 'ECA232G3336' => 'eca', 'ECA232G3763' => 'eca', 'ECA232G4845' => 'eca', 'ECA234G1607' => 'eca', 'ECA246G0932' => 'eca', 'ECA247G0781' => 'eca', 'ECA247G1932' => 'eca', 'ECA247G2079' => 'eca', 'ECA247G3338' => 'eca', 'ECA247G4115' => 'eca', 'EL10Ac3g06552' => 'bvu', 'EL10Ac5g10721' => 'bvu', 'EL10Ac5g10722' => 'bvu', 'EL10Ac5g10723' => 'bvu', 'EL10Ac5g11361' => 'bvu', 'EL10Ac6g13553' => 'bvu', 'EL10As8g23872' => 'bvu', 'Eucgr.B00250' => 'egr', 'Eucgr.B00251' => 'egr', 'Eucgr.B03533' => 'egr', 'Eucgr.I02381' => 'egr', 'Eucgr.K02700' => 'egr', 'FAN02G0174' => 'fan', 'FAN02G3146' => 'fan', 'FAN04G1672' => 'fan', 'FAN04G2273' => 'fan', 'FAN05G2791' => 'fan', 'FAN05G4035' => 'fan', 'FAN07G0834' => 'fan', 'FAN08G1198' => 'fan', 'FAN09G4182' => 'fan', 'FAN12G0496' => 'fan', 'FAN13G1027' => 'fan', 'FAN13G2951' => 'fan', 'FAN14G0705' => 'fan', 'FAN14G0720' => 'fan', 'FAN17G0201' => 'fan', 'FAN17G2665' => 'fan', 'FAN18G1456' => 'fan', 'FAN18G1525' => 'fan', 'FAN18G3500' => 'fan', 'FAN28G2670' => 'fan', 'FvH4_1g12391' => 'fve', 'FvH4_4g23220' => 'fve', 'FvH4_5g08810' => 'fve', 'FvH4_5g28960' => 'fve', 'FvH4_6g42820' => 'fve', 'FvH4_6g51110' => 'fve', 'Glyma.02G051802' => 'gma', 'Glyma.04G185300' => 'gma', 'Glyma.05G202900' => 'gma', 'Glyma.08G010300' => 'gma', 'Glyma.16G131900' => 'gma', 'Glyma.17G087900' => 'gma', 'Gohir.A07G048600' => 'ghi', 'Gohir.A11G179000' => 'ghi', 'Gohir.A12G140900' => 'ghi', 'Gohir.A12G140950' => 'ghi', 'Gohir.A12G191700' => 'ghi', 'Gohir.A13G086300' => 'ghi', 'Gohir.D07G052900' => 'ghi', 'Gohir.D11G186600' => 'ghi', 'Gohir.D12G145575' => 'ghi', 'Gohir.D12G145650' => 'ghi', 'Gohir.D12G145725' => 'ghi', 'Gohir.D12G194050' => 'ghi', 'Gohir.D13G091800' => 'ghi', 'Gorai.001G055900' => 'gra', 'Gorai.007G198400' => 'gra', 'Gorai.008G157000' => 'gra', 'Gorai.008G157100' => 'gra', 'Gorai.008G208700' => 'gra', 'Gorai.010G138700' => 'gra', 'GSVIVG01000977001' => 'vvi', 'GSVIVG01007708001' => 'vvi', 'GSVIVG01008587001' => 'vvi', 'GSVIVG01018849001' => 'vvi', 'GSVIVG01032432001' => 'vvi', 'HanXRQChr02g0034131' => 'han', 'HanXRQChr02g0035981' => 'han', 'HanXRQChr02g0035991' => 'han', 'HanXRQChr05g0155611' => 'han', 'HanXRQChr05g0155621' => 'han', 'HanXRQChr08g0236501' => 'han', 'HanXRQChr09g0261321' => 'han', 'HanXRQChr09g0272081' => 'han', 'HanXRQChr10g0310741' => 'han', 'HanXRQChr11g0325591' => 'han', 'HanXRQChr12g0385691' => 'han', 'HanXRQChr13g0387801' => 'han', 'HanXRQChr15g0463011' => 'han', 'Haze_03826' => 'cav', 'Haze_03827' => 'cav', 'Haze_07183' => 'cav', 'Haze_07537' => 'cav', 'Haze_07539' => 'cav', 'Haze_12461' => 'cav', 'Haze_16115' => 'cav', 'Haze_16808' => 'cav', 'Haze_18531' => 'cav', 'Hma1.2p1_0046F.1_g026700' => 'hma', 'Hma1.2p1_0046F.1_g026710' => 'hma', 'Hma1.2p1_0168F.1_g074340' => 'hma', 'Hma1.2p1_0266F.1_g107030' => 'hma', 'Hma1.2p1_0266F.1_g107060' => 'hma', 'Hma1.2p1_0275F.1_g110510' => 'hma', 'Hma1.2p1_0592F.1_g185490' => 'hma', 'Hma1.2p1_0592F.1_g185500' => 'hma', 'Hma1.2p1_0592F.1_g185510' => 'hma', 'Hma1.2p1_0592F.1_g185520' => 'hma', 'Hma1.2p1_0592F.1_g185530' => 'hma', 'Hma1.2p1_0818F.1_g223450' => 'hma', 'HPP92_009708' => 'vpl', 'HPP92_009793' => 'vpl', 'HPP92_009796' => 'vpl', 'HPP92_009797' => 'vpl', 'HPP92_014940' => 'vpl', 'HPP92_014988' => 'vpl', 'Hund02463' => 'sun', 'Hund02760' => 'sun', 'Hund05071' => 'sun', 'Hund10108' => 'sun', 'Hund11204' => 'sun', 'Hund14016' => 'sun', 'Hund16464' => 'sun', 'Lalb_Chr09g0333391' => 'lal', 'Lalb_Chr11g0070461' => 'lal', 'Lalb_Chr12g0201671' => 'lal', 'Lalb_Chr13g0297161' => 'lal', 'Lj1g0002823' => 'lja', 'Lj3C1074T6' => 'lonja', 'Lj4A212T28' => 'lonja', 'Lj4g0005516' => 'lja', 'Lj4g0013705' => 'lja', 'Lj4g0027865' => 'lja', 'Lj5C92G16' => 'lonja', 'Lj5C92T12' => 'lonja', 'Lj7C596T3' => 'lonja', 'Lj9A446G59' => 'lonja', 'Lj9A482G21' => 'lonja', 'Lsat_1_v5_gn_1_28261' => 'lsa', 'Lsat_1_v5_gn_1_28281' => 'lsa', 'Lsat_1_v5_gn_1_32721' => 'lsa', 'Lsat_1_v5_gn_4_151760' => 'lsa', 'Lsat_1_v5_gn_4_2120' => 'lsa', 'Lsat_1_v5_gn_4_75761' => 'lsa', 'Lsat_1_v5_gn_5_10920' => 'lsa', 'Manes.02G099900' => 'mes', 'Manes.11G096200' => 'mes', 'Manes.12G007200' => 'mes', 'Manes.14G048300' => 'mes', 'Manes.17G114700' => 'mes', 'Mapoly0002s0070' => 'mpo', 'Mapoly0029s0099' => 'mpo', 'MBI07_g24742_MAGBIO' => 'mbi', 'MBI10_g27988_MAGBIO' => 'mbi', 'MBI11_g13057_MAGBIO' => 'mbi', 'MD02G1137200' => 'mdo', 'MD06G1137200' => 'mdo', 'MD07G1122300' => 'mdo', 'MD09G1078200' => 'mdo', 'MD13G1123700' => 'mdo', 'MD14G1151900' => 'mdo', 'MD17G1030900' => 'mdo', 'MD17G1068200' => 'mdo', 'MD17G1068600' => 'mdo', 'Medtr3g077540' => 'mtr', 'Medtr4g105530' => 'mtr', 'Medtr8g076580' => 'mtr', 'Medtr8g076590' => 'mtr', 'Medtr8g096410' => 'mtr', 'MELO3C016411.2' => 'cme', 'MELO3C017780.2' => 'cme', 'MELO3C022560.2' => 'cme', 'MELO3C026187.2' => 'cme', 'MELO3C026286.2' => 'cme', 'MELO3C032854.2' => 'cme', 'Migut.H02495' => 'egut', 'Migut.I00561' => 'egut', 'Migut.K01015' => 'egut', 'Migut.K01016' => 'egut', 'Migut.L00743' => 'egut', 'Migut.L00744' => 'egut', 'Migut.L00746' => 'egut', 'Migut.L00798' => 'egut', 'Migut.L00799' => 'egut', 'Migut.N02096' => 'egut', 'MSTRG.11259' => 'ama', 'MSTRG.23142' => 'ama', 'MSTRG.2499' => 'ama', 'Nitab4.5_0000003g0730' => 'nta', 'Nitab4.5_0000137g0020' => 'nta', 'Nitab4.5_0000721g0210' => 'nta', 'Nitab4.5_0000723g0050' => 'nta', 'Nitab4.5_0000913g0070' => 'nta', 'Nitab4.5_0001332g0040' => 'nta', 'Nitab4.5_0001771g0050' => 'nta', 'Nitab4.5_0001918g0050' => 'nta', 'Nitab4.5_0002686g0030' => 'nta', 'Nitab4.5_0003156g0020' => 'nta', 'Nitab4.5_0003383g0040' => 'nta', 'Nitab4.5_0003918g0010' => 'nta', 'Nitab4.5_0006760g0010' => 'nta', 'Nn1g05981' => 'nnu', 'Nn1g06288' => 'nnu', 'Nn3g16371' => 'nnu', 'Nn3g16786' => 'nnu', 'Nn4g22232' => 'nnu', 'Oeu005144.1' => 'oeu', 'Oeu005145.1' => 'oeu', 'Oeu011348.1' => 'oeu', 'Oeu016415.1' => 'oeu', 'Oeu023501.1' => 'oeu', 'Oeu044473.1' => 'oeu', 'Oeu048892.2' => 'oeu', 'Os01g0549200' => 'osa', 'Os02g0469300' => 'osa', 'Os04g0311100' => 'osa', 'Os06g0474900' => 'osa', 'Os10g0181700' => 'osa', 'Os11g0454800' => 'osa', 'Peaxi162Scf00037g00714' => 'pax', 'Peaxi162Scf00084g01217' => 'pax', 'Peaxi162Scf00257g00217' => 'pax', 'Peaxi162Scf00516g00215' => 'pax', 'Peaxi162Scf00689g00123' => 'pax', 'PGR044G2719' => 'pgr', 'PGR083G1360' => 'pgr', 'PGR102G2849' => 'pgr', 'PGR119G2534' => 'pgr', 'PGSC0003DMG400003538' => 'stu', 'PGSC0003DMG400028138' => 'stu', 'PGSC0003DMG400031732' => 'stu', 'PGSC0003DMG400038165' => 'stu', 'Phvul.002G284600' => 'pvu', 'Phvul.003G258200' => 'pvu', 'Phvul.009G176500' => 'pvu', 'Potri.003G167201' => 'ptr', 'Potri.005G118400' => 'ptr', 'Potri.012G089000' => 'ptr', 'Potri.012G102800' => 'ptr', 'Potri.015G079400' => 'ptr', 'Potri.015G100900' => 'ptr', 'Pp3c14_9810' => 'ppa', 'Pp3c15_10450' => 'ppa', 'Pp3c20_19150' => 'ppa', 'Pp3c23_12740' => 'ppa', 'Pp3c23_6310' => 'ppa', 'Pp3c24_3720' => 'ppa', 'Pp3c27_2580' => 'ppa', 'Pp3c9_8990' => 'ppa', 'PRCOL_00002854' => 'pco', 'Prupe.1G221200' => 'ppe', 'Prupe.3G289000' => 'ppe', 'Prupe.5G147000' => 'ppe', 'Prupe.6G157300' => 'ppe', 'Prupe.7G163400' => 'ppe', 'Psat0s2177g0040' => 'psa', 'Psat3g174760' => 'psa', 'Psat3g192160' => 'psa', 'Psat4g058520' => 'psa', 'Psat4g096840' => 'psa', 'Psat7g037320' => 'psa', 'PSO017G1274' => 'pso', 'PSO017G5166' => 'pso', 'PSO063G4558' => 'pso', 'PSO170G4458' => 'pso', 'PSO170G5005' => 'pso', 'PSO210G6156' => 'pso', 'PSO210G6635' => 'pso', 'PSO210G7397' => 'pso', 'PSO210G7700' => 'pso', 'PSO455G0035' => 'pso', 'PSO455G0180' => 'pso', 'PSO478G4515' => 'pso', 'PSO832G1305' => 'pso', 'PSO832G3489' => 'pso', 'QL02p075247' => 'qlo', 'QL03p051148' => 'qlo', 'QL05p010313' => 'qlo', 'QL06p034627' => 'qlo', 'QL10p001889' => 'qlo', 'QL10p010846' => 'qlo', 'RcHm_v2.0_Chr1g0350621' => 'rch', 'RcHm_v2.0_Chr1g0350641' => 'rch', 'RcHm_v2.0_Chr2g0092891' => 'rch', 'RcHm_v2.0_Chr2g0100251' => 'rch', 'RcHm_v2.0_Chr2g0158661' => 'rch', 'RcHm_v2.0_Chr2g0172741' => 'rch', 'RcHm_v2.0_Chr4g0429571' => 'rch', 'RcHm_v2.0_Chr5g0042471' => 'rch', 'RcHm_v2.0_Chr7g0189451' => 'rch', 'Rhsim08G0052000' => 'rsi', 'Rhsim08G0174400' => 'rsi', 'Rhsim08G0193200' => 'rsi', 'Rhsim10G0214800' => 'rsi', 'Rhsim10G0214900' => 'rsi', 'Rhsim10G0215000' => 'rsi', 'Rhsim12G0022900' => 'rsi', 'Rhsim12G0177500' => 'rsi', 'Rhsim12G0177700' => 'rsi', 'Sabra03G0122600' => 'sbr', 'Sabra05G0097400' => 'sbr', 'Sabra12G0064100' => 'sbr', 'Sabra15G0121300' => 'sbr', 'SalBow2G0642' => 'sbo', 'SalBow5G2667' => 'sbo', 'SalBow5G4873' => 'sbo', 'SalBow8G2395' => 'sbo', 'Sc03g0003290' => 'sci', 'Sc10g0010130' => 'sci', 'Sc22g0003650' => 'sci', 'Sed0001603' => 'sed', 'Sed0004259' => 'sed', 'Sed0006789' => 'sed', 'Sed0011838' => 'sed', 'Sed0012964' => 'sed', 'Sed0016383' => 'sed', 'Sed0019010' => 'sed', 'Sed0020188' => 'sed', 'SEGI_04702' => 'sgi', 'SEGI_17231' => 'sgi', 'SEGI_18877' => 'sgi', 'SEGI_25196' => 'sgi', 'SEGI_25515' => 'sgi', 'SEGI_28445' => 'sgi', 'SEGI_37452' => 'sgi', 'SGA_v2.0_scaffold188G40336' => 'sas', 'SGA_v2.0_scaffold228G43247' => 'sas', 'SGA_v2.0_scaffold280G46853' => 'sas', 'SGA_v2.0_scaffold34G13808' => 'sas', 'SGA_v2.0_scaffold40G15576' => 'sas', 'SGA_v2.0_scaffold611G53188' => 'sas', 'SGA_v2.0_scaffold78G25461' => 'sas', 'SGA_v2.0_scaffold90G27888' => 'sas', 'SHI08601' => 'shi', 'SHI08606' => 'shi', 'SHI17117' => 'shi', 'SHI17119' => 'shi', 'SMO118G0201' => 'smo', 'SMO169G0247' => 'smo', 'SMO176G0006' => 'smo', 'SMO176G0015' => 'smo', 'SMO202G0006' => 'smo', 'SMO240G0050' => 'smo', 'SMO286G0009' => 'smo', 'SMO338G0033' => 'smo', 'SMO356G0533' => 'smo', 'SMO364G0382' => 'smo', 'SMO367G0166' => 'smo', 'SMO367G1098' => 'smo', 'Solyc01g009920.3' => 'sly', 'Solyc01g099300.3' => 'sly', 'Solyc02g084700.3' => 'sly', 'Solyc03g097520.3' => 'sly', 'Solyc06g071580.3' => 'sly', 'Solyc10g081760.3' => 'sly', 'Sopen01g005480' => 'spe', 'Sopen01g042850' => 'spe', 'Sopen02g029370' => 'spe', 'Sopen03g028280' => 'spe', 'Sopen06g027870' => 'spe', 'Sopen10g032270' => 'spe', 'Sp5g18180' => 'spa', 'Sp6g12880' => 'spa', 'Sp6g30850' => 'spa', 'Sp7g22960' => 'spa', 'Sp7g34010' => 'spa', 'SpUn1326_0010' => 'spa', 'TAR371G0242' => 'tar', 'TAR622G0638' => 'tar', 'TAR628G1548' => 'tar', 'TAR629G1079' => 'tar', 'TAR629G3413' => 'tar', 'THA.LOC104804249' => 'tha', 'THA.LOC104808315' => 'tha', 'THA.LOC104809238' => 'tha', 'THA.LOC104825484' => 'tha', 'Thecc.01G025500' => 'tca', 'Thecc.03G015800' => 'tca', 'Thecc.03G018000' => 'tca', 'Thecc.03G134800' => 'tca', 'Thecc.04G014700' => 'tca', 'Thhalv10006991m.g' => 'esa', 'Thhalv10012707m.g' => 'esa', 'Thhalv10015739m.g' => 'esa', 'Thhalv10024553m.g' => 'esa', 'Thhalv10024673m.g' => 'esa', 'Thhalv10029187m.g' => 'esa', 'TPR.G12971' => 'tpr', 'TPR.G29396' => 'tpr', 'TPR.G33376' => 'tpr', 'TPR.G35508' => 'tpr', 'TPR.G35516' => 'tpr', 'TPR.G37317' => 'tpr', 'TPR.G37389' => 'tpr', 'TPR.G37523' => 'tpr', 'TPR.G559' => 'tpr', 'TWI14G0070' => 'twi', 'TWI14G0729' => 'twi', 'TWI18G0596' => 'twi', 'TWI39G0780' => 'twi', 'TWI39G0850' => 'twi', 'TWI73G1052' => 'twi', 'unitig_52.g17485' => 'ugi', 'unitig_61.g26355' => 'ugi', 'vmacro01040' => 'vma', 'vmacro16731' => 'vma', 'vmacro18270' => 'vma', 'vmacro19142' => 'vma', 'vmacro19407' => 'vma', 'vmacro19408' => 'vma', 'vmacro21899' => 'vma', 'vmacro21900' => 'vma', 'vmacro21901' => 'vma', 'VMungo0251G0490' => 'vmu', 'VMungo0251G1748' => 'vmu', 'VMungo1309G0421' => 'vmu', 'Zm00001eb086500' => 'zma', 'Zm00001eb150680' => 'zma', 'Zm00001eb162330' => 'zma', 'Zm00001eb203130' => 'zma', 'Zm00001eb369480' => 'zma', 'Zm00001eb382340' => 'zma', 'Zm00001eb416360' => 'zma' ) $gf_id = 'HOM05D000902' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000902' ) $data_identifier = 'HOM05D000902' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 13, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 10, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 6, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 9, 'hma' => (int) 12, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 4, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 6, 'ppa' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 6, 'rch' => (int) 9, 'rsi' => (int) 9, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 12, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 3, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416360' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000902', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '663', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02470' => 'bna', 'A01p16260' => 'bna', 'A02p01680' => 'bna', 'A03p16600' => 'bna', 'A03p55660' => 'bna', 'A03p64160' => 'bna', 'A03p64170' => 'bna', 'A08p31900' => 'bna', 'A09p59530' => 'bna', 'A10p08230' => 'bna', 'A10p25090' => 'bna', 'Aa31LG3G7100' => 'aar', 'Aa31LG3G7110' => 'aar', 'Aa31LG6G13160' => 'aar', 'Aa31LG7G10770' => 'aar', 'Aa31LG7G3830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2723' => 'aag', 'Actinidia08045' => 'ach', 'Actinidia08888' => 'ach', 'Actinidia18333' => 'ach', 'Actinidia19334' => 'ach', 'Actinidia25552' => 'ach', 'Actinidia26089' => 'ach', 'Actinidia30615' => 'ach', 'Actinidia30616' => 'ach', 'Actinidia33083' => 'ach', 'Actinidia35762' => 'ach', 'Ah.02g110620' => 'amhyb', 'Ah.11g046390' => 'amhyb', 'AL1G31670' => 'aly', 'AL6G23730' => 'aly', 'AL7G14740' => 'aly', 'AL7G14750' => 'aly', 'AL7G14760' => 'aly', 'AL7G28220' => 'aly', 'AL8G24940' => 'aly', 'Aqoxy3G01665' => 'aox', 'Aqoxy3G02853' => 'aox', 'Aqoxy5G01513' => 'aox', 'Aqoxy5G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8SKA4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ75LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKDA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0LJZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7REX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZP4YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWX7I5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2QKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS0L9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPCD8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q161UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC7XCF' => 'arhy', 'AT1G19100' => 'ath', 'AT4G24970' => 'ath', 'AT4G36270' => 'ath', 'AT4G36280' => 'ath', 'AT4G36290' => 'ath', 'AT5G13130' => 'ath', 'AT5G50780' => 'ath', 'ATR0582G266' => 'atr', 'ATR0661G195' => 'atr', 'ATR1152G031' => 'atr', 'Atru.chr11.2382' => 'acertr', 'Atru.chr12.2337' => 'acertr', 'Atru.chr3.744' => 'acertr', 'Atru.chr6.1870' => 'acertr', 'Atru.chr9.2515' => 'acertr', 'AUR62004120' => 'cqu', 'AUR62005667' => 'cqu', 'AUR62007634' => 'cqu', 'AUR62008186' => 'cqu', 'AUR62008187' => 'cqu', 'AUR62008188' => 'cqu', 'AUR62027954' => 'cqu', 'AUR62028766' => 'cqu', 'AUR62028767' => 'cqu', 'AUR62028768' => 'cqu', 'AUR62028886' => 'cqu', 'AUR62029563' => 'cqu', 'AUR62038832' => 'cqu', 'BcaB01g04149' => 'bca', 'BcaB03g12940' => 'bca', 'BcaB03g13090' => 'bca', 'BcaB03g14466' => 'bca', 'BcaB05g24035' => 'bca', 'BcaC01g06050' => 'bca', 'BcaC04g19148' => 'bca', 'BcaC04g20761' => 'bca', 'BcaC06g32845' => 'bca', 'BcaC07g41274' => 'bca', 'BcaC09g50827' => 'bca', 'BcaNung00741' => 'bca', 'BcaNung00742' => 'bca', 'BcaNung01859' => 'bca', 'BcaNung03985' => 'bca', 'BcaNung03989' => 'bca', 'BcaNung05661' => 'bca', 'BolC1t00257H' => 'bol', 'BolC1t01956H' => 'bol', 'BolC2t06534H' => 'bol', 'BolC3t14334H' => 'bol', 'BolC5t30451H' => 'bol', 'BolC7t45880H' => 'bol', 'BolC7t46586H' => 'bol', 'BolC8t49301H' => 'bol', 'BolC8t51837H' => 'bol', 'BolC9t56822H' => 'bol', 'BolC9t59235H' => 'bol', 'BraA01t00234Z' => 'bra', 'BraA01t01563Z' => 'bra', 'BraA02t05147Z' => 'bra', 'BraA03t10947Z' => 'bra', 'BraA03t14633Z' => 'bra', 'BraA08t35112Z' => 'bra', 'BraA09t41330Z' => 'bra', 'BraA10t44570Z' => 'bra', 'C01p02670' => 'bna', 'C01p20260' => 'bna', 'C02p05890' => 'bna', 'C03p19530' => 'bna', 'C05p17470' => 'bna', 'C07p53900' => 'bna', 'C07p61630' => 'bna', 'C08p16800' => 'bna', 'C08p42810' => 'bna', 'C09p39480' => 'bna', 'C09p63980' => 'bna', 'CAN.G1001.7' => 'can', 'CAN.G1034.55' => 'can', 'CAN.G143.7' => 'can', 'CAN.G3340.1' => 'can', 'CAN.G358.19' => 'can', 'CAN.G373.2' => 'can', 'CAN.G674.16' => 'can', 'CAN.G674.17' => 'can', 'CAN.G674.18' => 'can', 'CAN.G732.2' => 'can', 'CAN.G732.3' => 'can', 'CAN.G993.39' => 'can', 'CANSAT01G2052' => 'cansat', 'CANSAT80G0070' => 'cansat', 'CANSAT80G0483' => 'cansat', 'CANSAT80G0625' => 'cansat', 'CARHR019690' => 'chi', 'CARHR080280' => 'chi', 'CARHR152750' => 'chi', 'CARHR152760' => 'chi', 'CARHR152770' => 'chi', 'CARHR200340' => 'chi', 'CARHR232370' => 'chi', 'CARHR244670' => 'chi', 'CARHR244680' => 'chi', 'CARHR257520' => 'chi', 'Carub.0001s1872' => 'cru', 'Carub.0006s1130' => 'cru', 'Carub.0007s0396' => 'cru', 'Carub.0007s0397' => 'cru', 'Carub.0007s1608' => 'cru', 'Carub.0008s1068' => 'cru', 'Carub.0008s1077' => 'cru', 'Ca_16158_v3' => 'car', 'Ca_17571_v3' => 'car', 'Ca_21936_v3' => 'car', 'Ca_22350_v3' => 'car', 'CBR_g22445' => 'cbr', 'CBR_g26290' => 'cbr', 'Cc04_g09610' => 'ccan', 'Cc04_g12280' => 'ccan', 'Cc07_g10230' => 'ccan', 'CDE02G0093' => 'cde', 'CDE02G0701' => 'cde', 'CDE04G1050' => 'cde', 'CDE05G1833' => 'cde', 'CDE05G3058' => 'cde', 'CDE05G3380' => 'cde', 'CDE06G0536' => 'cde', 'Cfa006923' => 'cfa', 'Cfa009402' => 'cfa', 'Cfa018751' => 'cfa', 'Cfa019164' => 'cfa', 'Cfa022935' => 'cfa', 'Ciclev10019081m.g' => 'ccl', 'Ciclev10025076m.g' => 'ccl', 'Ciclev10030712m.g' => 'ccl', 'Ciclev10033760m.g' => 'ccl', 'CiPaw.05G105600' => 'cil', 'CiPaw.08G136700' => 'cil', 'CiPaw.11G003900' => 'cil', 'CiPaw.11G023700' => 'cil', 'CiPaw.12G003700' => 'cil', 'ClCG06G017100' => 'cla', 'ClCG06G018110' => 'cla', 'ClCG07G008800' => 'cla', 'ClCG07G015330' => 'cla', 'COL.COLO4_13698' => 'col', 'COL.COLO4_16659' => 'col', 'COL.COLO4_21986' => 'col', 'COL.COLO4_24049' => 'col', 'COL.COLO4_29061' => 'col', 'COL.COLO4_29075' => 'col', 'COL.COLO4_30094' => 'col', 'Cpa.g.c33689' => 'cpa', 'Cpa.g.sc108.39' => 'cpa', 'Cpa.g.sc108.41' => 'cpa', 'Cpa.g.sc1163.1' => 'cpa', 'Cpa.g.sc4.155' => 'cpa', 'Cpa.g.sc6.194' => 'cpa', 'CsaV3_1G000340' => 'csa', 'CsaV3_1G001400' => 'csa', 'CsaV3_4G002220' => 'csa', 'CsaV3_4G005370' => 'csa', 'CSS0007487' => 'camsi', 'CSS0008066' => 'camsi', 'CSS0009120' => 'camsi', 'CSS0015512' => 'camsi', 'CSS0022409' => 'camsi', 'CSS0025358' => 'camsi', 'CSS0044547' => 'camsi', 'DCAR_013057' => 'dca', 'DCAR_015058' => 'dca', 'DCAR_016027' => 'dca', 'DCAR_017327' => 'dca', 'DCAR_020743' => 'dca', 'DCAR_026157' => 'dca', 'DCAR_032339' => 'dca', 'DCAR_032340' => 'dca', 'Dinv11200' => 'din', 'Dinv11201' => 'din', 'Dinv20631' => 'din', 'Dinv23182' => 'din', 'Dinv33466' => 'din', 'Dinv33583' => 'din', 'Dinv38565' => 'din', 'Duzib068G0200' => 'dzi', 'Duzib147G0132' => 'dzi', 'Duzib147G0635' => 'dzi', 'Duzib205G1670' => 'dzi', 'Duzib251G0606' => 'dzi', 'ECA232G3336' => 'eca', 'ECA232G3763' => 'eca', 'ECA232G4845' => 'eca', 'ECA234G1607' => 'eca', 'ECA246G0932' => 'eca', 'ECA247G0781' => 'eca', 'ECA247G1932' => 'eca', 'ECA247G2079' => 'eca', 'ECA247G3338' => 'eca', 'ECA247G4115' => 'eca', 'EL10Ac3g06552' => 'bvu', 'EL10Ac5g10721' => 'bvu', 'EL10Ac5g10722' => 'bvu', 'EL10Ac5g10723' => 'bvu', 'EL10Ac5g11361' => 'bvu', 'EL10Ac6g13553' => 'bvu', 'EL10As8g23872' => 'bvu', 'Eucgr.B00250' => 'egr', 'Eucgr.B00251' => 'egr', 'Eucgr.B03533' => 'egr', 'Eucgr.I02381' => 'egr', 'Eucgr.K02700' => 'egr', 'FAN02G0174' => 'fan', 'FAN02G3146' => 'fan', 'FAN04G1672' => 'fan', 'FAN04G2273' => 'fan', 'FAN05G2791' => 'fan', 'FAN05G4035' => 'fan', 'FAN07G0834' => 'fan', 'FAN08G1198' => 'fan', 'FAN09G4182' => 'fan', 'FAN12G0496' => 'fan', 'FAN13G1027' => 'fan', 'FAN13G2951' => 'fan', 'FAN14G0705' => 'fan', 'FAN14G0720' => 'fan', 'FAN17G0201' => 'fan', 'FAN17G2665' => 'fan', 'FAN18G1456' => 'fan', 'FAN18G1525' => 'fan', 'FAN18G3500' => 'fan', 'FAN28G2670' => 'fan', 'FvH4_1g12391' => 'fve', 'FvH4_4g23220' => 'fve', 'FvH4_5g08810' => 'fve', 'FvH4_5g28960' => 'fve', 'FvH4_6g42820' => 'fve', 'FvH4_6g51110' => 'fve', 'Glyma.02G051802' => 'gma', 'Glyma.04G185300' => 'gma', 'Glyma.05G202900' => 'gma', 'Glyma.08G010300' => 'gma', 'Glyma.16G131900' => 'gma', 'Glyma.17G087900' => 'gma', 'Gohir.A07G048600' => 'ghi', 'Gohir.A11G179000' => 'ghi', 'Gohir.A12G140900' => 'ghi', 'Gohir.A12G140950' => 'ghi', 'Gohir.A12G191700' => 'ghi', 'Gohir.A13G086300' => 'ghi', 'Gohir.D07G052900' => 'ghi', 'Gohir.D11G186600' => 'ghi', 'Gohir.D12G145575' => 'ghi', 'Gohir.D12G145650' => 'ghi', 'Gohir.D12G145725' => 'ghi', 'Gohir.D12G194050' => 'ghi', 'Gohir.D13G091800' => 'ghi', 'Gorai.001G055900' => 'gra', 'Gorai.007G198400' => 'gra', 'Gorai.008G157000' => 'gra', 'Gorai.008G157100' => 'gra', 'Gorai.008G208700' => 'gra', 'Gorai.010G138700' => 'gra', 'GSVIVG01000977001' => 'vvi', 'GSVIVG01007708001' => 'vvi', 'GSVIVG01008587001' => 'vvi', 'GSVIVG01018849001' => 'vvi', 'GSVIVG01032432001' => 'vvi', 'HanXRQChr02g0034131' => 'han', 'HanXRQChr02g0035981' => 'han', 'HanXRQChr02g0035991' => 'han', 'HanXRQChr05g0155611' => 'han', 'HanXRQChr05g0155621' => 'han', 'HanXRQChr08g0236501' => 'han', 'HanXRQChr09g0261321' => 'han', 'HanXRQChr09g0272081' => 'han', 'HanXRQChr10g0310741' => 'han', 'HanXRQChr11g0325591' => 'han', 'HanXRQChr12g0385691' => 'han', 'HanXRQChr13g0387801' => 'han', 'HanXRQChr15g0463011' => 'han', 'Haze_03826' => 'cav', 'Haze_03827' => 'cav', 'Haze_07183' => 'cav', 'Haze_07537' => 'cav', 'Haze_07539' => 'cav', 'Haze_12461' => 'cav', 'Haze_16115' => 'cav', 'Haze_16808' => 'cav', 'Haze_18531' => 'cav', 'Hma1.2p1_0046F.1_g026700' => 'hma', 'Hma1.2p1_0046F.1_g026710' => 'hma', 'Hma1.2p1_0168F.1_g074340' => 'hma', 'Hma1.2p1_0266F.1_g107030' => 'hma', 'Hma1.2p1_0266F.1_g107060' => 'hma', 'Hma1.2p1_0275F.1_g110510' => 'hma', 'Hma1.2p1_0592F.1_g185490' => 'hma', 'Hma1.2p1_0592F.1_g185500' => 'hma', 'Hma1.2p1_0592F.1_g185510' => 'hma', 'Hma1.2p1_0592F.1_g185520' => 'hma', 'Hma1.2p1_0592F.1_g185530' => 'hma', 'Hma1.2p1_0818F.1_g223450' => 'hma', 'HPP92_009708' => 'vpl', 'HPP92_009793' => 'vpl', 'HPP92_009796' => 'vpl', 'HPP92_009797' => 'vpl', 'HPP92_014940' => 'vpl', 'HPP92_014988' => 'vpl', 'Hund02463' => 'sun', 'Hund02760' => 'sun', 'Hund05071' => 'sun', 'Hund10108' => 'sun', 'Hund11204' => 'sun', 'Hund14016' => 'sun', 'Hund16464' => 'sun', 'Lalb_Chr09g0333391' => 'lal', 'Lalb_Chr11g0070461' => 'lal', 'Lalb_Chr12g0201671' => 'lal', 'Lalb_Chr13g0297161' => 'lal', 'Lj1g0002823' => 'lja', 'Lj3C1074T6' => 'lonja', 'Lj4A212T28' => 'lonja', 'Lj4g0005516' => 'lja', 'Lj4g0013705' => 'lja', 'Lj4g0027865' => 'lja', 'Lj5C92G16' => 'lonja', 'Lj5C92T12' => 'lonja', 'Lj7C596T3' => 'lonja', 'Lj9A446G59' => 'lonja', 'Lj9A482G21' => 'lonja', 'Lsat_1_v5_gn_1_28261' => 'lsa', 'Lsat_1_v5_gn_1_28281' => 'lsa', 'Lsat_1_v5_gn_1_32721' => 'lsa', 'Lsat_1_v5_gn_4_151760' => 'lsa', 'Lsat_1_v5_gn_4_2120' => 'lsa', 'Lsat_1_v5_gn_4_75761' => 'lsa', 'Lsat_1_v5_gn_5_10920' => 'lsa', 'Manes.02G099900' => 'mes', 'Manes.11G096200' => 'mes', 'Manes.12G007200' => 'mes', 'Manes.14G048300' => 'mes', 'Manes.17G114700' => 'mes', 'Mapoly0002s0070' => 'mpo', 'Mapoly0029s0099' => 'mpo', 'MBI07_g24742_MAGBIO' => 'mbi', 'MBI10_g27988_MAGBIO' => 'mbi', 'MBI11_g13057_MAGBIO' => 'mbi', 'MD02G1137200' => 'mdo', 'MD06G1137200' => 'mdo', 'MD07G1122300' => 'mdo', 'MD09G1078200' => 'mdo', 'MD13G1123700' => 'mdo', 'MD14G1151900' => 'mdo', 'MD17G1030900' => 'mdo', 'MD17G1068200' => 'mdo', 'MD17G1068600' => 'mdo', 'Medtr3g077540' => 'mtr', 'Medtr4g105530' => 'mtr', 'Medtr8g076580' => 'mtr', 'Medtr8g076590' => 'mtr', 'Medtr8g096410' => 'mtr', 'MELO3C016411.2' => 'cme', 'MELO3C017780.2' => 'cme', 'MELO3C022560.2' => 'cme', 'MELO3C026187.2' => 'cme', 'MELO3C026286.2' => 'cme', 'MELO3C032854.2' => 'cme', 'Migut.H02495' => 'egut', 'Migut.I00561' => 'egut', 'Migut.K01015' => 'egut', 'Migut.K01016' => 'egut', 'Migut.L00743' => 'egut', 'Migut.L00744' => 'egut', 'Migut.L00746' => 'egut', 'Migut.L00798' => 'egut', 'Migut.L00799' => 'egut', 'Migut.N02096' => 'egut', 'MSTRG.11259' => 'ama', 'MSTRG.23142' => 'ama', 'MSTRG.2499' => 'ama', 'Nitab4.5_0000003g0730' => 'nta', 'Nitab4.5_0000137g0020' => 'nta', 'Nitab4.5_0000721g0210' => 'nta', 'Nitab4.5_0000723g0050' => 'nta', 'Nitab4.5_0000913g0070' => 'nta', 'Nitab4.5_0001332g0040' => 'nta', 'Nitab4.5_0001771g0050' => 'nta', 'Nitab4.5_0001918g0050' => 'nta', 'Nitab4.5_0002686g0030' => 'nta', 'Nitab4.5_0003156g0020' => 'nta', 'Nitab4.5_0003383g0040' => 'nta', 'Nitab4.5_0003918g0010' => 'nta', 'Nitab4.5_0006760g0010' => 'nta', 'Nn1g05981' => 'nnu', 'Nn1g06288' => 'nnu', 'Nn3g16371' => 'nnu', 'Nn3g16786' => 'nnu', 'Nn4g22232' => 'nnu', 'Oeu005144.1' => 'oeu', 'Oeu005145.1' => 'oeu', 'Oeu011348.1' => 'oeu', 'Oeu016415.1' => 'oeu', 'Oeu023501.1' => 'oeu', 'Oeu044473.1' => 'oeu', 'Oeu048892.2' => 'oeu', 'Os01g0549200' => 'osa', 'Os02g0469300' => 'osa', 'Os04g0311100' => 'osa', 'Os06g0474900' => 'osa', 'Os10g0181700' => 'osa', 'Os11g0454800' => 'osa', 'Peaxi162Scf00037g00714' => 'pax', 'Peaxi162Scf00084g01217' => 'pax', 'Peaxi162Scf00257g00217' => 'pax', 'Peaxi162Scf00516g00215' => 'pax', 'Peaxi162Scf00689g00123' => 'pax', 'PGR044G2719' => 'pgr', 'PGR083G1360' => 'pgr', 'PGR102G2849' => 'pgr', 'PGR119G2534' => 'pgr', 'PGSC0003DMG400003538' => 'stu', 'PGSC0003DMG400028138' => 'stu', 'PGSC0003DMG400031732' => 'stu', 'PGSC0003DMG400038165' => 'stu', 'Phvul.002G284600' => 'pvu', 'Phvul.003G258200' => 'pvu', 'Phvul.009G176500' => 'pvu', 'Potri.003G167201' => 'ptr', 'Potri.005G118400' => 'ptr', 'Potri.012G089000' => 'ptr', 'Potri.012G102800' => 'ptr', 'Potri.015G079400' => 'ptr', 'Potri.015G100900' => 'ptr', 'Pp3c14_9810' => 'ppa', 'Pp3c15_10450' => 'ppa', 'Pp3c20_19150' => 'ppa', 'Pp3c23_12740' => 'ppa', 'Pp3c23_6310' => 'ppa', 'Pp3c24_3720' => 'ppa', 'Pp3c27_2580' => 'ppa', 'Pp3c9_8990' => 'ppa', 'PRCOL_00002854' => 'pco', 'Prupe.1G221200' => 'ppe', 'Prupe.3G289000' => 'ppe', 'Prupe.5G147000' => 'ppe', 'Prupe.6G157300' => 'ppe', 'Prupe.7G163400' => 'ppe', 'Psat0s2177g0040' => 'psa', 'Psat3g174760' => 'psa', 'Psat3g192160' => 'psa', 'Psat4g058520' => 'psa', 'Psat4g096840' => 'psa', 'Psat7g037320' => 'psa', 'PSO017G1274' => 'pso', 'PSO017G5166' => 'pso', 'PSO063G4558' => 'pso', 'PSO170G4458' => 'pso', 'PSO170G5005' => 'pso', 'PSO210G6156' => 'pso', 'PSO210G6635' => 'pso', 'PSO210G7397' => 'pso', 'PSO210G7700' => 'pso', 'PSO455G0035' => 'pso', 'PSO455G0180' => 'pso', 'PSO478G4515' => 'pso', 'PSO832G1305' => 'pso', 'PSO832G3489' => 'pso', 'QL02p075247' => 'qlo', 'QL03p051148' => 'qlo', 'QL05p010313' => 'qlo', 'QL06p034627' => 'qlo', 'QL10p001889' => 'qlo', 'QL10p010846' => 'qlo', 'RcHm_v2.0_Chr1g0350621' => 'rch', 'RcHm_v2.0_Chr1g0350641' => 'rch', 'RcHm_v2.0_Chr2g0092891' => 'rch', 'RcHm_v2.0_Chr2g0100251' => 'rch', 'RcHm_v2.0_Chr2g0158661' => 'rch', 'RcHm_v2.0_Chr2g0172741' => 'rch', 'RcHm_v2.0_Chr4g0429571' => 'rch', 'RcHm_v2.0_Chr5g0042471' => 'rch', 'RcHm_v2.0_Chr7g0189451' => 'rch', 'Rhsim08G0052000' => 'rsi', 'Rhsim08G0174400' => 'rsi', 'Rhsim08G0193200' => 'rsi', 'Rhsim10G0214800' => 'rsi', 'Rhsim10G0214900' => 'rsi', 'Rhsim10G0215000' => 'rsi', 'Rhsim12G0022900' => 'rsi', 'Rhsim12G0177500' => 'rsi', 'Rhsim12G0177700' => 'rsi', 'Sabra03G0122600' => 'sbr', 'Sabra05G0097400' => 'sbr', 'Sabra12G0064100' => 'sbr', 'Sabra15G0121300' => 'sbr', 'SalBow2G0642' => 'sbo', 'SalBow5G2667' => 'sbo', 'SalBow5G4873' => 'sbo', 'SalBow8G2395' => 'sbo', 'Sc03g0003290' => 'sci', 'Sc10g0010130' => 'sci', 'Sc22g0003650' => 'sci', 'Sed0001603' => 'sed', 'Sed0004259' => 'sed', 'Sed0006789' => 'sed', 'Sed0011838' => 'sed', 'Sed0012964' => 'sed', 'Sed0016383' => 'sed', 'Sed0019010' => 'sed', 'Sed0020188' => 'sed', 'SEGI_04702' => 'sgi', 'SEGI_17231' => 'sgi', 'SEGI_18877' => 'sgi', 'SEGI_25196' => 'sgi', 'SEGI_25515' => 'sgi', 'SEGI_28445' => 'sgi', 'SEGI_37452' => 'sgi', 'SGA_v2.0_scaffold188G40336' => 'sas', 'SGA_v2.0_scaffold228G43247' => 'sas', 'SGA_v2.0_scaffold280G46853' => 'sas', 'SGA_v2.0_scaffold34G13808' => 'sas', 'SGA_v2.0_scaffold40G15576' => 'sas', 'SGA_v2.0_scaffold611G53188' => 'sas', 'SGA_v2.0_scaffold78G25461' => 'sas', 'SGA_v2.0_scaffold90G27888' => 'sas', 'SHI08601' => 'shi', 'SHI08606' => 'shi', 'SHI17117' => 'shi', 'SHI17119' => 'shi', 'SMO118G0201' => 'smo', 'SMO169G0247' => 'smo', 'SMO176G0006' => 'smo', 'SMO176G0015' => 'smo', 'SMO202G0006' => 'smo', 'SMO240G0050' => 'smo', 'SMO286G0009' => 'smo', 'SMO338G0033' => 'smo', 'SMO356G0533' => 'smo', 'SMO364G0382' => 'smo', 'SMO367G0166' => 'smo', 'SMO367G1098' => 'smo', 'Solyc01g009920.3' => 'sly', 'Solyc01g099300.3' => 'sly', 'Solyc02g084700.3' => 'sly', 'Solyc03g097520.3' => 'sly', 'Solyc06g071580.3' => 'sly', 'Solyc10g081760.3' => 'sly', 'Sopen01g005480' => 'spe', 'Sopen01g042850' => 'spe', 'Sopen02g029370' => 'spe', 'Sopen03g028280' => 'spe', 'Sopen06g027870' => 'spe', 'Sopen10g032270' => 'spe', 'Sp5g18180' => 'spa', 'Sp6g12880' => 'spa', 'Sp6g30850' => 'spa', 'Sp7g22960' => 'spa', 'Sp7g34010' => 'spa', 'SpUn1326_0010' => 'spa', 'TAR371G0242' => 'tar', 'TAR622G0638' => 'tar', 'TAR628G1548' => 'tar', 'TAR629G1079' => 'tar', 'TAR629G3413' => 'tar', 'THA.LOC104804249' => 'tha', 'THA.LOC104808315' => 'tha', 'THA.LOC104809238' => 'tha', 'THA.LOC104825484' => 'tha', 'Thecc.01G025500' => 'tca', 'Thecc.03G015800' => 'tca', 'Thecc.03G018000' => 'tca', 'Thecc.03G134800' => 'tca', 'Thecc.04G014700' => 'tca', 'Thhalv10006991m.g' => 'esa', 'Thhalv10012707m.g' => 'esa', 'Thhalv10015739m.g' => 'esa', 'Thhalv10024553m.g' => 'esa', 'Thhalv10024673m.g' => 'esa', 'Thhalv10029187m.g' => 'esa', 'TPR.G12971' => 'tpr', 'TPR.G29396' => 'tpr', 'TPR.G33376' => 'tpr', 'TPR.G35508' => 'tpr', 'TPR.G35516' => 'tpr', 'TPR.G37317' => 'tpr', 'TPR.G37389' => 'tpr', 'TPR.G37523' => 'tpr', 'TPR.G559' => 'tpr', 'TWI14G0070' => 'twi', 'TWI14G0729' => 'twi', 'TWI18G0596' => 'twi', 'TWI39G0780' => 'twi', 'TWI39G0850' => 'twi', 'TWI73G1052' => 'twi', 'unitig_52.g17485' => 'ugi', 'unitig_61.g26355' => 'ugi', 'vmacro01040' => 'vma', 'vmacro16731' => 'vma', 'vmacro18270' => 'vma', 'vmacro19142' => 'vma', 'vmacro19407' => 'vma', 'vmacro19408' => 'vma', 'vmacro21899' => 'vma', 'vmacro21900' => 'vma', 'vmacro21901' => 'vma', 'VMungo0251G0490' => 'vmu', 'VMungo0251G1748' => 'vmu', 'VMungo1309G0421' => 'vmu', 'Zm00001eb086500' => 'zma', 'Zm00001eb150680' => 'zma', 'Zm00001eb162330' => 'zma', 'Zm00001eb203130' => 'zma', 'Zm00001eb369480' => 'zma', 'Zm00001eb382340' => 'zma', 'Zm00001eb416360' => 'zma' ), 'gf_id' => 'HOM05D000902', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000902' ), 'data_identifier' => 'HOM05D000902', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000902', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '663', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02470' => 'bna', 'A01p16260' => 'bna', 'A02p01680' => 'bna', 'A03p16600' => 'bna', 'A03p55660' => 'bna', 'A03p64160' => 'bna', 'A03p64170' => 'bna', 'A08p31900' => 'bna', 'A09p59530' => 'bna', 'A10p08230' => 'bna', 'A10p25090' => 'bna', 'Aa31LG3G7100' => 'aar', 'Aa31LG3G7110' => 'aar', 'Aa31LG6G13160' => 'aar', 'Aa31LG7G10770' => 'aar', 'Aa31LG7G3830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2723' => 'aag', 'Actinidia08045' => 'ach', 'Actinidia08888' => 'ach', 'Actinidia18333' => 'ach', 'Actinidia19334' => 'ach', 'Actinidia25552' => 'ach', 'Actinidia26089' => 'ach', 'Actinidia30615' => 'ach', 'Actinidia30616' => 'ach', 'Actinidia33083' => 'ach', 'Actinidia35762' => 'ach', 'Ah.02g110620' => 'amhyb', 'Ah.11g046390' => 'amhyb', 'AL1G31670' => 'aly', 'AL6G23730' => 'aly', 'AL7G14740' => 'aly', 'AL7G14750' => 'aly', 'AL7G14760' => 'aly', 'AL7G28220' => 'aly', 'AL8G24940' => 'aly', 'Aqoxy3G01665' => 'aox', 'Aqoxy3G02853' => 'aox', 'Aqoxy5G01513' => 'aox', 'Aqoxy5G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8SKA4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ75LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKDA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0LJZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7REX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZP4YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWX7I5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2QKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS0L9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPCD8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q161UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC7XCF' => 'arhy', 'AT1G19100' => 'ath', 'AT4G24970' => 'ath', 'AT4G36270' => 'ath', 'AT4G36280' => 'ath', 'AT4G36290' => 'ath', 'AT5G13130' => 'ath', 'AT5G50780' => 'ath', 'ATR0582G266' => 'atr', 'ATR0661G195' => 'atr', 'ATR1152G031' => 'atr', 'Atru.chr11.2382' => 'acertr', 'Atru.chr12.2337' => 'acertr', 'Atru.chr3.744' => 'acertr', 'Atru.chr6.1870' => 'acertr', 'Atru.chr9.2515' => 'acertr', 'AUR62004120' => 'cqu', 'AUR62005667' => 'cqu', 'AUR62007634' => 'cqu', 'AUR62008186' => 'cqu', 'AUR62008187' => 'cqu', 'AUR62008188' => 'cqu', 'AUR62027954' => 'cqu', 'AUR62028766' => 'cqu', 'AUR62028767' => 'cqu', 'AUR62028768' => 'cqu', 'AUR62028886' => 'cqu', 'AUR62029563' => 'cqu', 'AUR62038832' => 'cqu', 'BcaB01g04149' => 'bca', 'BcaB03g12940' => 'bca', 'BcaB03g13090' => 'bca', 'BcaB03g14466' => 'bca', 'BcaB05g24035' => 'bca', 'BcaC01g06050' => 'bca', 'BcaC04g19148' => 'bca', 'BcaC04g20761' => 'bca', 'BcaC06g32845' => 'bca', 'BcaC07g41274' => 'bca', 'BcaC09g50827' => 'bca', 'BcaNung00741' => 'bca', 'BcaNung00742' => 'bca', 'BcaNung01859' => 'bca', 'BcaNung03985' => 'bca', 'BcaNung03989' => 'bca', 'BcaNung05661' => 'bca', 'BolC1t00257H' => 'bol', 'BolC1t01956H' => 'bol', 'BolC2t06534H' => 'bol', 'BolC3t14334H' => 'bol', 'BolC5t30451H' => 'bol', 'BolC7t45880H' => 'bol', 'BolC7t46586H' => 'bol', 'BolC8t49301H' => 'bol', 'BolC8t51837H' => 'bol', 'BolC9t56822H' => 'bol', 'BolC9t59235H' => 'bol', 'BraA01t00234Z' => 'bra', 'BraA01t01563Z' => 'bra', 'BraA02t05147Z' => 'bra', 'BraA03t10947Z' => 'bra', 'BraA03t14633Z' => 'bra', 'BraA08t35112Z' => 'bra', 'BraA09t41330Z' => 'bra', 'BraA10t44570Z' => 'bra', 'C01p02670' => 'bna', 'C01p20260' => 'bna', 'C02p05890' => 'bna', 'C03p19530' => 'bna', 'C05p17470' => 'bna', 'C07p53900' => 'bna', 'C07p61630' => 'bna', 'C08p16800' => 'bna', 'C08p42810' => 'bna', 'C09p39480' => 'bna', 'C09p63980' => 'bna', 'CAN.G1001.7' => 'can', 'CAN.G1034.55' => 'can', 'CAN.G143.7' => 'can', 'CAN.G3340.1' => 'can', 'CAN.G358.19' => 'can', 'CAN.G373.2' => 'can', 'CAN.G674.16' => 'can', 'CAN.G674.17' => 'can', 'CAN.G674.18' => 'can', 'CAN.G732.2' => 'can', 'CAN.G732.3' => 'can', 'CAN.G993.39' => 'can', 'CANSAT01G2052' => 'cansat', 'CANSAT80G0070' => 'cansat', 'CANSAT80G0483' => 'cansat', 'CANSAT80G0625' => 'cansat', 'CARHR019690' => 'chi', 'CARHR080280' => 'chi', 'CARHR152750' => 'chi', 'CARHR152760' => 'chi', 'CARHR152770' => 'chi', 'CARHR200340' => 'chi', 'CARHR232370' => 'chi', 'CARHR244670' => 'chi', 'CARHR244680' => 'chi', 'CARHR257520' => 'chi', 'Carub.0001s1872' => 'cru', 'Carub.0006s1130' => 'cru', 'Carub.0007s0396' => 'cru', 'Carub.0007s0397' => 'cru', 'Carub.0007s1608' => 'cru', 'Carub.0008s1068' => 'cru', 'Carub.0008s1077' => 'cru', 'Ca_16158_v3' => 'car', 'Ca_17571_v3' => 'car', 'Ca_21936_v3' => 'car', 'Ca_22350_v3' => 'car', 'CBR_g22445' => 'cbr', 'CBR_g26290' => 'cbr', 'Cc04_g09610' => 'ccan', 'Cc04_g12280' => 'ccan', 'Cc07_g10230' => 'ccan', 'CDE02G0093' => 'cde', 'CDE02G0701' => 'cde', 'CDE04G1050' => 'cde', 'CDE05G1833' => 'cde', 'CDE05G3058' => 'cde', 'CDE05G3380' => 'cde', 'CDE06G0536' => 'cde', 'Cfa006923' => 'cfa', 'Cfa009402' => 'cfa', 'Cfa018751' => 'cfa', 'Cfa019164' => 'cfa', 'Cfa022935' => 'cfa', 'Ciclev10019081m.g' => 'ccl', 'Ciclev10025076m.g' => 'ccl', 'Ciclev10030712m.g' => 'ccl', 'Ciclev10033760m.g' => 'ccl', 'CiPaw.05G105600' => 'cil', 'CiPaw.08G136700' => 'cil', 'CiPaw.11G003900' => 'cil', 'CiPaw.11G023700' => 'cil', 'CiPaw.12G003700' => 'cil', 'ClCG06G017100' => 'cla', 'ClCG06G018110' => 'cla', 'ClCG07G008800' => 'cla', 'ClCG07G015330' => 'cla', 'COL.COLO4_13698' => 'col', 'COL.COLO4_16659' => 'col', 'COL.COLO4_21986' => 'col', 'COL.COLO4_24049' => 'col', 'COL.COLO4_29061' => 'col', 'COL.COLO4_29075' => 'col', 'COL.COLO4_30094' => 'col', 'Cpa.g.c33689' => 'cpa', 'Cpa.g.sc108.39' => 'cpa', 'Cpa.g.sc108.41' => 'cpa', 'Cpa.g.sc1163.1' => 'cpa', 'Cpa.g.sc4.155' => 'cpa', 'Cpa.g.sc6.194' => 'cpa', 'CsaV3_1G000340' => 'csa', 'CsaV3_1G001400' => 'csa', 'CsaV3_4G002220' => 'csa', 'CsaV3_4G005370' => 'csa', 'CSS0007487' => 'camsi', 'CSS0008066' => 'camsi', 'CSS0009120' => 'camsi', 'CSS0015512' => 'camsi', 'CSS0022409' => 'camsi', 'CSS0025358' => 'camsi', 'CSS0044547' => 'camsi', 'DCAR_013057' => 'dca', 'DCAR_015058' => 'dca', 'DCAR_016027' => 'dca', 'DCAR_017327' => 'dca', 'DCAR_020743' => 'dca', 'DCAR_026157' => 'dca', 'DCAR_032339' => 'dca', 'DCAR_032340' => 'dca', 'Dinv11200' => 'din', 'Dinv11201' => 'din', 'Dinv20631' => 'din', 'Dinv23182' => 'din', 'Dinv33466' => 'din', 'Dinv33583' => 'din', 'Dinv38565' => 'din', 'Duzib068G0200' => 'dzi', 'Duzib147G0132' => 'dzi', 'Duzib147G0635' => 'dzi', 'Duzib205G1670' => 'dzi', 'Duzib251G0606' => 'dzi', 'ECA232G3336' => 'eca', 'ECA232G3763' => 'eca', 'ECA232G4845' => 'eca', 'ECA234G1607' => 'eca', 'ECA246G0932' => 'eca', 'ECA247G0781' => 'eca', 'ECA247G1932' => 'eca', 'ECA247G2079' => 'eca', 'ECA247G3338' => 'eca', 'ECA247G4115' => 'eca', 'EL10Ac3g06552' => 'bvu', 'EL10Ac5g10721' => 'bvu', 'EL10Ac5g10722' => 'bvu', 'EL10Ac5g10723' => 'bvu', 'EL10Ac5g11361' => 'bvu', 'EL10Ac6g13553' => 'bvu', 'EL10As8g23872' => 'bvu', 'Eucgr.B00250' => 'egr', 'Eucgr.B00251' => 'egr', 'Eucgr.B03533' => 'egr', 'Eucgr.I02381' => 'egr', 'Eucgr.K02700' => 'egr', 'FAN02G0174' => 'fan', 'FAN02G3146' => 'fan', 'FAN04G1672' => 'fan', 'FAN04G2273' => 'fan', 'FAN05G2791' => 'fan', 'FAN05G4035' => 'fan', 'FAN07G0834' => 'fan', 'FAN08G1198' => 'fan', 'FAN09G4182' => 'fan', 'FAN12G0496' => 'fan', 'FAN13G1027' => 'fan', 'FAN13G2951' => 'fan', 'FAN14G0705' => 'fan', 'FAN14G0720' => 'fan', 'FAN17G0201' => 'fan', 'FAN17G2665' => 'fan', 'FAN18G1456' => 'fan', 'FAN18G1525' => 'fan', 'FAN18G3500' => 'fan', 'FAN28G2670' => 'fan', 'FvH4_1g12391' => 'fve', 'FvH4_4g23220' => 'fve', 'FvH4_5g08810' => 'fve', 'FvH4_5g28960' => 'fve', 'FvH4_6g42820' => 'fve', 'FvH4_6g51110' => 'fve', 'Glyma.02G051802' => 'gma', 'Glyma.04G185300' => 'gma', 'Glyma.05G202900' => 'gma', 'Glyma.08G010300' => 'gma', 'Glyma.16G131900' => 'gma', 'Glyma.17G087900' => 'gma', 'Gohir.A07G048600' => 'ghi', 'Gohir.A11G179000' => 'ghi', 'Gohir.A12G140900' => 'ghi', 'Gohir.A12G140950' => 'ghi', 'Gohir.A12G191700' => 'ghi', 'Gohir.A13G086300' => 'ghi', 'Gohir.D07G052900' => 'ghi', 'Gohir.D11G186600' => 'ghi', 'Gohir.D12G145575' => 'ghi', 'Gohir.D12G145650' => 'ghi', 'Gohir.D12G145725' => 'ghi', 'Gohir.D12G194050' => 'ghi', 'Gohir.D13G091800' => 'ghi', 'Gorai.001G055900' => 'gra', 'Gorai.007G198400' => 'gra', 'Gorai.008G157000' => 'gra', 'Gorai.008G157100' => 'gra', 'Gorai.008G208700' => 'gra', 'Gorai.010G138700' => 'gra', 'GSVIVG01000977001' => 'vvi', 'GSVIVG01007708001' => 'vvi', 'GSVIVG01008587001' => 'vvi', 'GSVIVG01018849001' => 'vvi', 'GSVIVG01032432001' => 'vvi', 'HanXRQChr02g0034131' => 'han', 'HanXRQChr02g0035981' => 'han', 'HanXRQChr02g0035991' => 'han', 'HanXRQChr05g0155611' => 'han', 'HanXRQChr05g0155621' => 'han', 'HanXRQChr08g0236501' => 'han', 'HanXRQChr09g0261321' => 'han', 'HanXRQChr09g0272081' => 'han', 'HanXRQChr10g0310741' => 'han', 'HanXRQChr11g0325591' => 'han', 'HanXRQChr12g0385691' => 'han', 'HanXRQChr13g0387801' => 'han', 'HanXRQChr15g0463011' => 'han', 'Haze_03826' => 'cav', 'Haze_03827' => 'cav', 'Haze_07183' => 'cav', 'Haze_07537' => 'cav', 'Haze_07539' => 'cav', 'Haze_12461' => 'cav', 'Haze_16115' => 'cav', 'Haze_16808' => 'cav', 'Haze_18531' => 'cav', 'Hma1.2p1_0046F.1_g026700' => 'hma', 'Hma1.2p1_0046F.1_g026710' => 'hma', 'Hma1.2p1_0168F.1_g074340' => 'hma', 'Hma1.2p1_0266F.1_g107030' => 'hma', 'Hma1.2p1_0266F.1_g107060' => 'hma', 'Hma1.2p1_0275F.1_g110510' => 'hma', 'Hma1.2p1_0592F.1_g185490' => 'hma', 'Hma1.2p1_0592F.1_g185500' => 'hma', 'Hma1.2p1_0592F.1_g185510' => 'hma', 'Hma1.2p1_0592F.1_g185520' => 'hma', 'Hma1.2p1_0592F.1_g185530' => 'hma', 'Hma1.2p1_0818F.1_g223450' => 'hma', 'HPP92_009708' => 'vpl', 'HPP92_009793' => 'vpl', 'HPP92_009796' => 'vpl', 'HPP92_009797' => 'vpl', 'HPP92_014940' => 'vpl', 'HPP92_014988' => 'vpl', 'Hund02463' => 'sun', 'Hund02760' => 'sun', 'Hund05071' => 'sun', 'Hund10108' => 'sun', 'Hund11204' => 'sun', 'Hund14016' => 'sun', 'Hund16464' => 'sun', 'Lalb_Chr09g0333391' => 'lal', 'Lalb_Chr11g0070461' => 'lal', 'Lalb_Chr12g0201671' => 'lal', 'Lalb_Chr13g0297161' => 'lal', 'Lj1g0002823' => 'lja', 'Lj3C1074T6' => 'lonja', 'Lj4A212T28' => 'lonja', 'Lj4g0005516' => 'lja', 'Lj4g0013705' => 'lja', 'Lj4g0027865' => 'lja', 'Lj5C92G16' => 'lonja', 'Lj5C92T12' => 'lonja', 'Lj7C596T3' => 'lonja', 'Lj9A446G59' => 'lonja', 'Lj9A482G21' => 'lonja', 'Lsat_1_v5_gn_1_28261' => 'lsa', 'Lsat_1_v5_gn_1_28281' => 'lsa', 'Lsat_1_v5_gn_1_32721' => 'lsa', 'Lsat_1_v5_gn_4_151760' => 'lsa', 'Lsat_1_v5_gn_4_2120' => 'lsa', 'Lsat_1_v5_gn_4_75761' => 'lsa', 'Lsat_1_v5_gn_5_10920' => 'lsa', 'Manes.02G099900' => 'mes', 'Manes.11G096200' => 'mes', 'Manes.12G007200' => 'mes', 'Manes.14G048300' => 'mes', 'Manes.17G114700' => 'mes', 'Mapoly0002s0070' => 'mpo', 'Mapoly0029s0099' => 'mpo', 'MBI07_g24742_MAGBIO' => 'mbi', 'MBI10_g27988_MAGBIO' => 'mbi', 'MBI11_g13057_MAGBIO' => 'mbi', 'MD02G1137200' => 'mdo', 'MD06G1137200' => 'mdo', 'MD07G1122300' => 'mdo', 'MD09G1078200' => 'mdo', 'MD13G1123700' => 'mdo', 'MD14G1151900' => 'mdo', 'MD17G1030900' => 'mdo', 'MD17G1068200' => 'mdo', 'MD17G1068600' => 'mdo', 'Medtr3g077540' => 'mtr', 'Medtr4g105530' => 'mtr', 'Medtr8g076580' => 'mtr', 'Medtr8g076590' => 'mtr', 'Medtr8g096410' => 'mtr', 'MELO3C016411.2' => 'cme', 'MELO3C017780.2' => 'cme', 'MELO3C022560.2' => 'cme', 'MELO3C026187.2' => 'cme', 'MELO3C026286.2' => 'cme', 'MELO3C032854.2' => 'cme', 'Migut.H02495' => 'egut', 'Migut.I00561' => 'egut', 'Migut.K01015' => 'egut', 'Migut.K01016' => 'egut', 'Migut.L00743' => 'egut', 'Migut.L00744' => 'egut', 'Migut.L00746' => 'egut', 'Migut.L00798' => 'egut', 'Migut.L00799' => 'egut', 'Migut.N02096' => 'egut', 'MSTRG.11259' => 'ama', 'MSTRG.23142' => 'ama', 'MSTRG.2499' => 'ama', 'Nitab4.5_0000003g0730' => 'nta', 'Nitab4.5_0000137g0020' => 'nta', 'Nitab4.5_0000721g0210' => 'nta', 'Nitab4.5_0000723g0050' => 'nta', 'Nitab4.5_0000913g0070' => 'nta', 'Nitab4.5_0001332g0040' => 'nta', 'Nitab4.5_0001771g0050' => 'nta', 'Nitab4.5_0001918g0050' => 'nta', 'Nitab4.5_0002686g0030' => 'nta', 'Nitab4.5_0003156g0020' => 'nta', 'Nitab4.5_0003383g0040' => 'nta', 'Nitab4.5_0003918g0010' => 'nta', 'Nitab4.5_0006760g0010' => 'nta', 'Nn1g05981' => 'nnu', 'Nn1g06288' => 'nnu', 'Nn3g16371' => 'nnu', 'Nn3g16786' => 'nnu', 'Nn4g22232' => 'nnu', 'Oeu005144.1' => 'oeu', 'Oeu005145.1' => 'oeu', 'Oeu011348.1' => 'oeu', 'Oeu016415.1' => 'oeu', 'Oeu023501.1' => 'oeu', 'Oeu044473.1' => 'oeu', 'Oeu048892.2' => 'oeu', 'Os01g0549200' => 'osa', 'Os02g0469300' => 'osa', 'Os04g0311100' => 'osa', 'Os06g0474900' => 'osa', 'Os10g0181700' => 'osa', 'Os11g0454800' => 'osa', 'Peaxi162Scf00037g00714' => 'pax', 'Peaxi162Scf00084g01217' => 'pax', 'Peaxi162Scf00257g00217' => 'pax', 'Peaxi162Scf00516g00215' => 'pax', 'Peaxi162Scf00689g00123' => 'pax', 'PGR044G2719' => 'pgr', 'PGR083G1360' => 'pgr', 'PGR102G2849' => 'pgr', 'PGR119G2534' => 'pgr', 'PGSC0003DMG400003538' => 'stu', 'PGSC0003DMG400028138' => 'stu', 'PGSC0003DMG400031732' => 'stu', 'PGSC0003DMG400038165' => 'stu', 'Phvul.002G284600' => 'pvu', 'Phvul.003G258200' => 'pvu', 'Phvul.009G176500' => 'pvu', 'Potri.003G167201' => 'ptr', 'Potri.005G118400' => 'ptr', 'Potri.012G089000' => 'ptr', 'Potri.012G102800' => 'ptr', 'Potri.015G079400' => 'ptr', 'Potri.015G100900' => 'ptr', 'Pp3c14_9810' => 'ppa', 'Pp3c15_10450' => 'ppa', 'Pp3c20_19150' => 'ppa', 'Pp3c23_12740' => 'ppa', 'Pp3c23_6310' => 'ppa', 'Pp3c24_3720' => 'ppa', 'Pp3c27_2580' => 'ppa', 'Pp3c9_8990' => 'ppa', 'PRCOL_00002854' => 'pco', 'Prupe.1G221200' => 'ppe', 'Prupe.3G289000' => 'ppe', 'Prupe.5G147000' => 'ppe', 'Prupe.6G157300' => 'ppe', 'Prupe.7G163400' => 'ppe', 'Psat0s2177g0040' => 'psa', 'Psat3g174760' => 'psa', 'Psat3g192160' => 'psa', 'Psat4g058520' => 'psa', 'Psat4g096840' => 'psa', 'Psat7g037320' => 'psa', 'PSO017G1274' => 'pso', 'PSO017G5166' => 'pso', 'PSO063G4558' => 'pso', 'PSO170G4458' => 'pso', 'PSO170G5005' => 'pso', 'PSO210G6156' => 'pso', 'PSO210G6635' => 'pso', 'PSO210G7397' => 'pso', 'PSO210G7700' => 'pso', 'PSO455G0035' => 'pso', 'PSO455G0180' => 'pso', 'PSO478G4515' => 'pso', 'PSO832G1305' => 'pso', 'PSO832G3489' => 'pso', 'QL02p075247' => 'qlo', 'QL03p051148' => 'qlo', 'QL05p010313' => 'qlo', 'QL06p034627' => 'qlo', 'QL10p001889' => 'qlo', 'QL10p010846' => 'qlo', 'RcHm_v2.0_Chr1g0350621' => 'rch', 'RcHm_v2.0_Chr1g0350641' => 'rch', 'RcHm_v2.0_Chr2g0092891' => 'rch', 'RcHm_v2.0_Chr2g0100251' => 'rch', 'RcHm_v2.0_Chr2g0158661' => 'rch', 'RcHm_v2.0_Chr2g0172741' => 'rch', 'RcHm_v2.0_Chr4g0429571' => 'rch', 'RcHm_v2.0_Chr5g0042471' => 'rch', 'RcHm_v2.0_Chr7g0189451' => 'rch', 'Rhsim08G0052000' => 'rsi', 'Rhsim08G0174400' => 'rsi', 'Rhsim08G0193200' => 'rsi', 'Rhsim10G0214800' => 'rsi', 'Rhsim10G0214900' => 'rsi', 'Rhsim10G0215000' => 'rsi', 'Rhsim12G0022900' => 'rsi', 'Rhsim12G0177500' => 'rsi', 'Rhsim12G0177700' => 'rsi', 'Sabra03G0122600' => 'sbr', 'Sabra05G0097400' => 'sbr', 'Sabra12G0064100' => 'sbr', 'Sabra15G0121300' => 'sbr', 'SalBow2G0642' => 'sbo', 'SalBow5G2667' => 'sbo', 'SalBow5G4873' => 'sbo', 'SalBow8G2395' => 'sbo', 'Sc03g0003290' => 'sci', 'Sc10g0010130' => 'sci', 'Sc22g0003650' => 'sci', 'Sed0001603' => 'sed', 'Sed0004259' => 'sed', 'Sed0006789' => 'sed', 'Sed0011838' => 'sed', 'Sed0012964' => 'sed', 'Sed0016383' => 'sed', 'Sed0019010' => 'sed', 'Sed0020188' => 'sed', 'SEGI_04702' => 'sgi', 'SEGI_17231' => 'sgi', 'SEGI_18877' => 'sgi', 'SEGI_25196' => 'sgi', 'SEGI_25515' => 'sgi', 'SEGI_28445' => 'sgi', 'SEGI_37452' => 'sgi', 'SGA_v2.0_scaffold188G40336' => 'sas', 'SGA_v2.0_scaffold228G43247' => 'sas', 'SGA_v2.0_scaffold280G46853' => 'sas', 'SGA_v2.0_scaffold34G13808' => 'sas', 'SGA_v2.0_scaffold40G15576' => 'sas', 'SGA_v2.0_scaffold611G53188' => 'sas', 'SGA_v2.0_scaffold78G25461' => 'sas', 'SGA_v2.0_scaffold90G27888' => 'sas', 'SHI08601' => 'shi', 'SHI08606' => 'shi', 'SHI17117' => 'shi', 'SHI17119' => 'shi', 'SMO118G0201' => 'smo', 'SMO169G0247' => 'smo', 'SMO176G0006' => 'smo', 'SMO176G0015' => 'smo', 'SMO202G0006' => 'smo', 'SMO240G0050' => 'smo', 'SMO286G0009' => 'smo', 'SMO338G0033' => 'smo', 'SMO356G0533' => 'smo', 'SMO364G0382' => 'smo', 'SMO367G0166' => 'smo', 'SMO367G1098' => 'smo', 'Solyc01g009920.3' => 'sly', 'Solyc01g099300.3' => 'sly', 'Solyc02g084700.3' => 'sly', 'Solyc03g097520.3' => 'sly', 'Solyc06g071580.3' => 'sly', 'Solyc10g081760.3' => 'sly', 'Sopen01g005480' => 'spe', 'Sopen01g042850' => 'spe', 'Sopen02g029370' => 'spe', 'Sopen03g028280' => 'spe', 'Sopen06g027870' => 'spe', 'Sopen10g032270' => 'spe', 'Sp5g18180' => 'spa', 'Sp6g12880' => 'spa', 'Sp6g30850' => 'spa', 'Sp7g22960' => 'spa', 'Sp7g34010' => 'spa', 'SpUn1326_0010' => 'spa', 'TAR371G0242' => 'tar', 'TAR622G0638' => 'tar', 'TAR628G1548' => 'tar', 'TAR629G1079' => 'tar', 'TAR629G3413' => 'tar', 'THA.LOC104804249' => 'tha', 'THA.LOC104808315' => 'tha', 'THA.LOC104809238' => 'tha', 'THA.LOC104825484' => 'tha', 'Thecc.01G025500' => 'tca', 'Thecc.03G015800' => 'tca', 'Thecc.03G018000' => 'tca', 'Thecc.03G134800' => 'tca', 'Thecc.04G014700' => 'tca', 'Thhalv10006991m.g' => 'esa', 'Thhalv10012707m.g' => 'esa', 'Thhalv10015739m.g' => 'esa', 'Thhalv10024553m.g' => 'esa', 'Thhalv10024673m.g' => 'esa', 'Thhalv10029187m.g' => 'esa', 'TPR.G12971' => 'tpr', 'TPR.G29396' => 'tpr', 'TPR.G33376' => 'tpr', 'TPR.G35508' => 'tpr', 'TPR.G35516' => 'tpr', 'TPR.G37317' => 'tpr', 'TPR.G37389' => 'tpr', 'TPR.G37523' => 'tpr', 'TPR.G559' => 'tpr', 'TWI14G0070' => 'twi', 'TWI14G0729' => 'twi', 'TWI18G0596' => 'twi', 'TWI39G0780' => 'twi', 'TWI39G0850' => 'twi', 'TWI73G1052' => 'twi', 'unitig_52.g17485' => 'ugi', 'unitig_61.g26355' => 'ugi', 'vmacro01040' => 'vma', 'vmacro16731' => 'vma', 'vmacro18270' => 'vma', 'vmacro19142' => 'vma', 'vmacro19407' => 'vma', 'vmacro19408' => 'vma', 'vmacro21899' => 'vma', 'vmacro21900' => 'vma', 'vmacro21901' => 'vma', 'VMungo0251G0490' => 'vmu', 'VMungo0251G1748' => 'vmu', 'VMungo1309G0421' => 'vmu', 'Zm00001eb086500' => 'zma', 'Zm00001eb150680' => 'zma', 'Zm00001eb162330' => 'zma', 'Zm00001eb203130' => 'zma', 'Zm00001eb369480' => 'zma', 'Zm00001eb382340' => 'zma', 'Zm00001eb416360' => 'zma' ) $gf_id = 'HOM05D000902' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000902' ) $data_identifier = 'HOM05D000902' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 13, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 10, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 6, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 9, 'hma' => (int) 12, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 4, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 6, 'ppa' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 6, 'rch' => (int) 9, 'rsi' => (int) 9, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 12, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 3, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416360' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000902', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '663', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02470' => 'bna', 'A01p16260' => 'bna', 'A02p01680' => 'bna', 'A03p16600' => 'bna', 'A03p55660' => 'bna', 'A03p64160' => 'bna', 'A03p64170' => 'bna', 'A08p31900' => 'bna', 'A09p59530' => 'bna', 'A10p08230' => 'bna', 'A10p25090' => 'bna', 'Aa31LG3G7100' => 'aar', 'Aa31LG3G7110' => 'aar', 'Aa31LG6G13160' => 'aar', 'Aa31LG7G10770' => 'aar', 'Aa31LG7G3830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2723' => 'aag', 'Actinidia08045' => 'ach', 'Actinidia08888' => 'ach', 'Actinidia18333' => 'ach', 'Actinidia19334' => 'ach', 'Actinidia25552' => 'ach', 'Actinidia26089' => 'ach', 'Actinidia30615' => 'ach', 'Actinidia30616' => 'ach', 'Actinidia33083' => 'ach', 'Actinidia35762' => 'ach', 'Ah.02g110620' => 'amhyb', 'Ah.11g046390' => 'amhyb', 'AL1G31670' => 'aly', 'AL6G23730' => 'aly', 'AL7G14740' => 'aly', 'AL7G14750' => 'aly', 'AL7G14760' => 'aly', 'AL7G28220' => 'aly', 'AL8G24940' => 'aly', 'Aqoxy3G01665' => 'aox', 'Aqoxy3G02853' => 'aox', 'Aqoxy5G01513' => 'aox', 'Aqoxy5G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8SKA4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ75LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKDA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0LJZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7REX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZP4YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWX7I5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2QKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS0L9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPCD8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q161UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC7XCF' => 'arhy', 'AT1G19100' => 'ath', 'AT4G24970' => 'ath', 'AT4G36270' => 'ath', 'AT4G36280' => 'ath', 'AT4G36290' => 'ath', 'AT5G13130' => 'ath', 'AT5G50780' => 'ath', 'ATR0582G266' => 'atr', 'ATR0661G195' => 'atr', 'ATR1152G031' => 'atr', 'Atru.chr11.2382' => 'acertr', 'Atru.chr12.2337' => 'acertr', 'Atru.chr3.744' => 'acertr', 'Atru.chr6.1870' => 'acertr', 'Atru.chr9.2515' => 'acertr', 'AUR62004120' => 'cqu', 'AUR62005667' => 'cqu', 'AUR62007634' => 'cqu', 'AUR62008186' => 'cqu', 'AUR62008187' => 'cqu', 'AUR62008188' => 'cqu', 'AUR62027954' => 'cqu', 'AUR62028766' => 'cqu', 'AUR62028767' => 'cqu', 'AUR62028768' => 'cqu', 'AUR62028886' => 'cqu', 'AUR62029563' => 'cqu', 'AUR62038832' => 'cqu', 'BcaB01g04149' => 'bca', 'BcaB03g12940' => 'bca', 'BcaB03g13090' => 'bca', 'BcaB03g14466' => 'bca', 'BcaB05g24035' => 'bca', 'BcaC01g06050' => 'bca', 'BcaC04g19148' => 'bca', 'BcaC04g20761' => 'bca', 'BcaC06g32845' => 'bca', 'BcaC07g41274' => 'bca', 'BcaC09g50827' => 'bca', 'BcaNung00741' => 'bca', 'BcaNung00742' => 'bca', 'BcaNung01859' => 'bca', 'BcaNung03985' => 'bca', 'BcaNung03989' => 'bca', 'BcaNung05661' => 'bca', 'BolC1t00257H' => 'bol', 'BolC1t01956H' => 'bol', 'BolC2t06534H' => 'bol', 'BolC3t14334H' => 'bol', 'BolC5t30451H' => 'bol', 'BolC7t45880H' => 'bol', 'BolC7t46586H' => 'bol', 'BolC8t49301H' => 'bol', 'BolC8t51837H' => 'bol', 'BolC9t56822H' => 'bol', 'BolC9t59235H' => 'bol', 'BraA01t00234Z' => 'bra', 'BraA01t01563Z' => 'bra', 'BraA02t05147Z' => 'bra', 'BraA03t10947Z' => 'bra', 'BraA03t14633Z' => 'bra', 'BraA08t35112Z' => 'bra', 'BraA09t41330Z' => 'bra', 'BraA10t44570Z' => 'bra', 'C01p02670' => 'bna', 'C01p20260' => 'bna', 'C02p05890' => 'bna', 'C03p19530' => 'bna', 'C05p17470' => 'bna', 'C07p53900' => 'bna', 'C07p61630' => 'bna', 'C08p16800' => 'bna', 'C08p42810' => 'bna', 'C09p39480' => 'bna', 'C09p63980' => 'bna', 'CAN.G1001.7' => 'can', 'CAN.G1034.55' => 'can', 'CAN.G143.7' => 'can', 'CAN.G3340.1' => 'can', 'CAN.G358.19' => 'can', 'CAN.G373.2' => 'can', 'CAN.G674.16' => 'can', 'CAN.G674.17' => 'can', 'CAN.G674.18' => 'can', 'CAN.G732.2' => 'can', 'CAN.G732.3' => 'can', 'CAN.G993.39' => 'can', 'CANSAT01G2052' => 'cansat', 'CANSAT80G0070' => 'cansat', 'CANSAT80G0483' => 'cansat', 'CANSAT80G0625' => 'cansat', 'CARHR019690' => 'chi', 'CARHR080280' => 'chi', 'CARHR152750' => 'chi', 'CARHR152760' => 'chi', 'CARHR152770' => 'chi', 'CARHR200340' => 'chi', 'CARHR232370' => 'chi', 'CARHR244670' => 'chi', 'CARHR244680' => 'chi', 'CARHR257520' => 'chi', 'Carub.0001s1872' => 'cru', 'Carub.0006s1130' => 'cru', 'Carub.0007s0396' => 'cru', 'Carub.0007s0397' => 'cru', 'Carub.0007s1608' => 'cru', 'Carub.0008s1068' => 'cru', 'Carub.0008s1077' => 'cru', 'Ca_16158_v3' => 'car', 'Ca_17571_v3' => 'car', 'Ca_21936_v3' => 'car', 'Ca_22350_v3' => 'car', 'CBR_g22445' => 'cbr', 'CBR_g26290' => 'cbr', 'Cc04_g09610' => 'ccan', 'Cc04_g12280' => 'ccan', 'Cc07_g10230' => 'ccan', 'CDE02G0093' => 'cde', 'CDE02G0701' => 'cde', 'CDE04G1050' => 'cde', 'CDE05G1833' => 'cde', 'CDE05G3058' => 'cde', 'CDE05G3380' => 'cde', 'CDE06G0536' => 'cde', 'Cfa006923' => 'cfa', 'Cfa009402' => 'cfa', 'Cfa018751' => 'cfa', 'Cfa019164' => 'cfa', 'Cfa022935' => 'cfa', 'Ciclev10019081m.g' => 'ccl', 'Ciclev10025076m.g' => 'ccl', 'Ciclev10030712m.g' => 'ccl', 'Ciclev10033760m.g' => 'ccl', 'CiPaw.05G105600' => 'cil', 'CiPaw.08G136700' => 'cil', 'CiPaw.11G003900' => 'cil', 'CiPaw.11G023700' => 'cil', 'CiPaw.12G003700' => 'cil', 'ClCG06G017100' => 'cla', 'ClCG06G018110' => 'cla', 'ClCG07G008800' => 'cla', 'ClCG07G015330' => 'cla', 'COL.COLO4_13698' => 'col', 'COL.COLO4_16659' => 'col', 'COL.COLO4_21986' => 'col', 'COL.COLO4_24049' => 'col', 'COL.COLO4_29061' => 'col', 'COL.COLO4_29075' => 'col', 'COL.COLO4_30094' => 'col', 'Cpa.g.c33689' => 'cpa', 'Cpa.g.sc108.39' => 'cpa', 'Cpa.g.sc108.41' => 'cpa', 'Cpa.g.sc1163.1' => 'cpa', 'Cpa.g.sc4.155' => 'cpa', 'Cpa.g.sc6.194' => 'cpa', 'CsaV3_1G000340' => 'csa', 'CsaV3_1G001400' => 'csa', 'CsaV3_4G002220' => 'csa', 'CsaV3_4G005370' => 'csa', 'CSS0007487' => 'camsi', 'CSS0008066' => 'camsi', 'CSS0009120' => 'camsi', 'CSS0015512' => 'camsi', 'CSS0022409' => 'camsi', 'CSS0025358' => 'camsi', 'CSS0044547' => 'camsi', 'DCAR_013057' => 'dca', 'DCAR_015058' => 'dca', 'DCAR_016027' => 'dca', 'DCAR_017327' => 'dca', 'DCAR_020743' => 'dca', 'DCAR_026157' => 'dca', 'DCAR_032339' => 'dca', 'DCAR_032340' => 'dca', 'Dinv11200' => 'din', 'Dinv11201' => 'din', 'Dinv20631' => 'din', 'Dinv23182' => 'din', 'Dinv33466' => 'din', 'Dinv33583' => 'din', 'Dinv38565' => 'din', 'Duzib068G0200' => 'dzi', 'Duzib147G0132' => 'dzi', 'Duzib147G0635' => 'dzi', 'Duzib205G1670' => 'dzi', 'Duzib251G0606' => 'dzi', 'ECA232G3336' => 'eca', 'ECA232G3763' => 'eca', 'ECA232G4845' => 'eca', 'ECA234G1607' => 'eca', 'ECA246G0932' => 'eca', 'ECA247G0781' => 'eca', 'ECA247G1932' => 'eca', 'ECA247G2079' => 'eca', 'ECA247G3338' => 'eca', 'ECA247G4115' => 'eca', 'EL10Ac3g06552' => 'bvu', 'EL10Ac5g10721' => 'bvu', 'EL10Ac5g10722' => 'bvu', 'EL10Ac5g10723' => 'bvu', 'EL10Ac5g11361' => 'bvu', 'EL10Ac6g13553' => 'bvu', 'EL10As8g23872' => 'bvu', 'Eucgr.B00250' => 'egr', 'Eucgr.B00251' => 'egr', 'Eucgr.B03533' => 'egr', 'Eucgr.I02381' => 'egr', 'Eucgr.K02700' => 'egr', 'FAN02G0174' => 'fan', 'FAN02G3146' => 'fan', 'FAN04G1672' => 'fan', 'FAN04G2273' => 'fan', 'FAN05G2791' => 'fan', 'FAN05G4035' => 'fan', 'FAN07G0834' => 'fan', 'FAN08G1198' => 'fan', 'FAN09G4182' => 'fan', 'FAN12G0496' => 'fan', 'FAN13G1027' => 'fan', 'FAN13G2951' => 'fan', 'FAN14G0705' => 'fan', 'FAN14G0720' => 'fan', 'FAN17G0201' => 'fan', 'FAN17G2665' => 'fan', 'FAN18G1456' => 'fan', 'FAN18G1525' => 'fan', 'FAN18G3500' => 'fan', 'FAN28G2670' => 'fan', 'FvH4_1g12391' => 'fve', 'FvH4_4g23220' => 'fve', 'FvH4_5g08810' => 'fve', 'FvH4_5g28960' => 'fve', 'FvH4_6g42820' => 'fve', 'FvH4_6g51110' => 'fve', 'Glyma.02G051802' => 'gma', 'Glyma.04G185300' => 'gma', 'Glyma.05G202900' => 'gma', 'Glyma.08G010300' => 'gma', 'Glyma.16G131900' => 'gma', 'Glyma.17G087900' => 'gma', 'Gohir.A07G048600' => 'ghi', 'Gohir.A11G179000' => 'ghi', 'Gohir.A12G140900' => 'ghi', 'Gohir.A12G140950' => 'ghi', 'Gohir.A12G191700' => 'ghi', 'Gohir.A13G086300' => 'ghi', 'Gohir.D07G052900' => 'ghi', 'Gohir.D11G186600' => 'ghi', 'Gohir.D12G145575' => 'ghi', 'Gohir.D12G145650' => 'ghi', 'Gohir.D12G145725' => 'ghi', 'Gohir.D12G194050' => 'ghi', 'Gohir.D13G091800' => 'ghi', 'Gorai.001G055900' => 'gra', 'Gorai.007G198400' => 'gra', 'Gorai.008G157000' => 'gra', 'Gorai.008G157100' => 'gra', 'Gorai.008G208700' => 'gra', 'Gorai.010G138700' => 'gra', 'GSVIVG01000977001' => 'vvi', 'GSVIVG01007708001' => 'vvi', 'GSVIVG01008587001' => 'vvi', 'GSVIVG01018849001' => 'vvi', 'GSVIVG01032432001' => 'vvi', 'HanXRQChr02g0034131' => 'han', 'HanXRQChr02g0035981' => 'han', 'HanXRQChr02g0035991' => 'han', 'HanXRQChr05g0155611' => 'han', 'HanXRQChr05g0155621' => 'han', 'HanXRQChr08g0236501' => 'han', 'HanXRQChr09g0261321' => 'han', 'HanXRQChr09g0272081' => 'han', 'HanXRQChr10g0310741' => 'han', 'HanXRQChr11g0325591' => 'han', 'HanXRQChr12g0385691' => 'han', 'HanXRQChr13g0387801' => 'han', 'HanXRQChr15g0463011' => 'han', 'Haze_03826' => 'cav', 'Haze_03827' => 'cav', 'Haze_07183' => 'cav', 'Haze_07537' => 'cav', 'Haze_07539' => 'cav', 'Haze_12461' => 'cav', 'Haze_16115' => 'cav', 'Haze_16808' => 'cav', 'Haze_18531' => 'cav', 'Hma1.2p1_0046F.1_g026700' => 'hma', 'Hma1.2p1_0046F.1_g026710' => 'hma', 'Hma1.2p1_0168F.1_g074340' => 'hma', 'Hma1.2p1_0266F.1_g107030' => 'hma', 'Hma1.2p1_0266F.1_g107060' => 'hma', 'Hma1.2p1_0275F.1_g110510' => 'hma', 'Hma1.2p1_0592F.1_g185490' => 'hma', 'Hma1.2p1_0592F.1_g185500' => 'hma', 'Hma1.2p1_0592F.1_g185510' => 'hma', 'Hma1.2p1_0592F.1_g185520' => 'hma', 'Hma1.2p1_0592F.1_g185530' => 'hma', 'Hma1.2p1_0818F.1_g223450' => 'hma', 'HPP92_009708' => 'vpl', 'HPP92_009793' => 'vpl', 'HPP92_009796' => 'vpl', 'HPP92_009797' => 'vpl', 'HPP92_014940' => 'vpl', 'HPP92_014988' => 'vpl', 'Hund02463' => 'sun', 'Hund02760' => 'sun', 'Hund05071' => 'sun', 'Hund10108' => 'sun', 'Hund11204' => 'sun', 'Hund14016' => 'sun', 'Hund16464' => 'sun', 'Lalb_Chr09g0333391' => 'lal', 'Lalb_Chr11g0070461' => 'lal', 'Lalb_Chr12g0201671' => 'lal', 'Lalb_Chr13g0297161' => 'lal', 'Lj1g0002823' => 'lja', 'Lj3C1074T6' => 'lonja', 'Lj4A212T28' => 'lonja', 'Lj4g0005516' => 'lja', 'Lj4g0013705' => 'lja', 'Lj4g0027865' => 'lja', 'Lj5C92G16' => 'lonja', 'Lj5C92T12' => 'lonja', 'Lj7C596T3' => 'lonja', 'Lj9A446G59' => 'lonja', 'Lj9A482G21' => 'lonja', 'Lsat_1_v5_gn_1_28261' => 'lsa', 'Lsat_1_v5_gn_1_28281' => 'lsa', 'Lsat_1_v5_gn_1_32721' => 'lsa', 'Lsat_1_v5_gn_4_151760' => 'lsa', 'Lsat_1_v5_gn_4_2120' => 'lsa', 'Lsat_1_v5_gn_4_75761' => 'lsa', 'Lsat_1_v5_gn_5_10920' => 'lsa', 'Manes.02G099900' => 'mes', 'Manes.11G096200' => 'mes', 'Manes.12G007200' => 'mes', 'Manes.14G048300' => 'mes', 'Manes.17G114700' => 'mes', 'Mapoly0002s0070' => 'mpo', 'Mapoly0029s0099' => 'mpo', 'MBI07_g24742_MAGBIO' => 'mbi', 'MBI10_g27988_MAGBIO' => 'mbi', 'MBI11_g13057_MAGBIO' => 'mbi', 'MD02G1137200' => 'mdo', 'MD06G1137200' => 'mdo', 'MD07G1122300' => 'mdo', 'MD09G1078200' => 'mdo', 'MD13G1123700' => 'mdo', 'MD14G1151900' => 'mdo', 'MD17G1030900' => 'mdo', 'MD17G1068200' => 'mdo', 'MD17G1068600' => 'mdo', 'Medtr3g077540' => 'mtr', 'Medtr4g105530' => 'mtr', 'Medtr8g076580' => 'mtr', 'Medtr8g076590' => 'mtr', 'Medtr8g096410' => 'mtr', 'MELO3C016411.2' => 'cme', 'MELO3C017780.2' => 'cme', 'MELO3C022560.2' => 'cme', 'MELO3C026187.2' => 'cme', 'MELO3C026286.2' => 'cme', 'MELO3C032854.2' => 'cme', 'Migut.H02495' => 'egut', 'Migut.I00561' => 'egut', 'Migut.K01015' => 'egut', 'Migut.K01016' => 'egut', 'Migut.L00743' => 'egut', 'Migut.L00744' => 'egut', 'Migut.L00746' => 'egut', 'Migut.L00798' => 'egut', 'Migut.L00799' => 'egut', 'Migut.N02096' => 'egut', 'MSTRG.11259' => 'ama', 'MSTRG.23142' => 'ama', 'MSTRG.2499' => 'ama', 'Nitab4.5_0000003g0730' => 'nta', 'Nitab4.5_0000137g0020' => 'nta', 'Nitab4.5_0000721g0210' => 'nta', 'Nitab4.5_0000723g0050' => 'nta', 'Nitab4.5_0000913g0070' => 'nta', 'Nitab4.5_0001332g0040' => 'nta', 'Nitab4.5_0001771g0050' => 'nta', 'Nitab4.5_0001918g0050' => 'nta', 'Nitab4.5_0002686g0030' => 'nta', 'Nitab4.5_0003156g0020' => 'nta', 'Nitab4.5_0003383g0040' => 'nta', 'Nitab4.5_0003918g0010' => 'nta', 'Nitab4.5_0006760g0010' => 'nta', 'Nn1g05981' => 'nnu', 'Nn1g06288' => 'nnu', 'Nn3g16371' => 'nnu', 'Nn3g16786' => 'nnu', 'Nn4g22232' => 'nnu', 'Oeu005144.1' => 'oeu', 'Oeu005145.1' => 'oeu', 'Oeu011348.1' => 'oeu', 'Oeu016415.1' => 'oeu', 'Oeu023501.1' => 'oeu', 'Oeu044473.1' => 'oeu', 'Oeu048892.2' => 'oeu', 'Os01g0549200' => 'osa', 'Os02g0469300' => 'osa', 'Os04g0311100' => 'osa', 'Os06g0474900' => 'osa', 'Os10g0181700' => 'osa', 'Os11g0454800' => 'osa', 'Peaxi162Scf00037g00714' => 'pax', 'Peaxi162Scf00084g01217' => 'pax', 'Peaxi162Scf00257g00217' => 'pax', 'Peaxi162Scf00516g00215' => 'pax', 'Peaxi162Scf00689g00123' => 'pax', 'PGR044G2719' => 'pgr', 'PGR083G1360' => 'pgr', 'PGR102G2849' => 'pgr', 'PGR119G2534' => 'pgr', 'PGSC0003DMG400003538' => 'stu', 'PGSC0003DMG400028138' => 'stu', 'PGSC0003DMG400031732' => 'stu', 'PGSC0003DMG400038165' => 'stu', 'Phvul.002G284600' => 'pvu', 'Phvul.003G258200' => 'pvu', 'Phvul.009G176500' => 'pvu', 'Potri.003G167201' => 'ptr', 'Potri.005G118400' => 'ptr', 'Potri.012G089000' => 'ptr', 'Potri.012G102800' => 'ptr', 'Potri.015G079400' => 'ptr', 'Potri.015G100900' => 'ptr', 'Pp3c14_9810' => 'ppa', 'Pp3c15_10450' => 'ppa', 'Pp3c20_19150' => 'ppa', 'Pp3c23_12740' => 'ppa', 'Pp3c23_6310' => 'ppa', 'Pp3c24_3720' => 'ppa', 'Pp3c27_2580' => 'ppa', 'Pp3c9_8990' => 'ppa', 'PRCOL_00002854' => 'pco', 'Prupe.1G221200' => 'ppe', 'Prupe.3G289000' => 'ppe', 'Prupe.5G147000' => 'ppe', 'Prupe.6G157300' => 'ppe', 'Prupe.7G163400' => 'ppe', 'Psat0s2177g0040' => 'psa', 'Psat3g174760' => 'psa', 'Psat3g192160' => 'psa', 'Psat4g058520' => 'psa', 'Psat4g096840' => 'psa', 'Psat7g037320' => 'psa', 'PSO017G1274' => 'pso', 'PSO017G5166' => 'pso', 'PSO063G4558' => 'pso', 'PSO170G4458' => 'pso', 'PSO170G5005' => 'pso', 'PSO210G6156' => 'pso', 'PSO210G6635' => 'pso', 'PSO210G7397' => 'pso', 'PSO210G7700' => 'pso', 'PSO455G0035' => 'pso', 'PSO455G0180' => 'pso', 'PSO478G4515' => 'pso', 'PSO832G1305' => 'pso', 'PSO832G3489' => 'pso', 'QL02p075247' => 'qlo', 'QL03p051148' => 'qlo', 'QL05p010313' => 'qlo', 'QL06p034627' => 'qlo', 'QL10p001889' => 'qlo', 'QL10p010846' => 'qlo', 'RcHm_v2.0_Chr1g0350621' => 'rch', 'RcHm_v2.0_Chr1g0350641' => 'rch', 'RcHm_v2.0_Chr2g0092891' => 'rch', 'RcHm_v2.0_Chr2g0100251' => 'rch', 'RcHm_v2.0_Chr2g0158661' => 'rch', 'RcHm_v2.0_Chr2g0172741' => 'rch', 'RcHm_v2.0_Chr4g0429571' => 'rch', 'RcHm_v2.0_Chr5g0042471' => 'rch', 'RcHm_v2.0_Chr7g0189451' => 'rch', 'Rhsim08G0052000' => 'rsi', 'Rhsim08G0174400' => 'rsi', 'Rhsim08G0193200' => 'rsi', 'Rhsim10G0214800' => 'rsi', 'Rhsim10G0214900' => 'rsi', 'Rhsim10G0215000' => 'rsi', 'Rhsim12G0022900' => 'rsi', 'Rhsim12G0177500' => 'rsi', 'Rhsim12G0177700' => 'rsi', 'Sabra03G0122600' => 'sbr', 'Sabra05G0097400' => 'sbr', 'Sabra12G0064100' => 'sbr', 'Sabra15G0121300' => 'sbr', 'SalBow2G0642' => 'sbo', 'SalBow5G2667' => 'sbo', 'SalBow5G4873' => 'sbo', 'SalBow8G2395' => 'sbo', 'Sc03g0003290' => 'sci', 'Sc10g0010130' => 'sci', 'Sc22g0003650' => 'sci', 'Sed0001603' => 'sed', 'Sed0004259' => 'sed', 'Sed0006789' => 'sed', 'Sed0011838' => 'sed', 'Sed0012964' => 'sed', 'Sed0016383' => 'sed', 'Sed0019010' => 'sed', 'Sed0020188' => 'sed', 'SEGI_04702' => 'sgi', 'SEGI_17231' => 'sgi', 'SEGI_18877' => 'sgi', 'SEGI_25196' => 'sgi', 'SEGI_25515' => 'sgi', 'SEGI_28445' => 'sgi', 'SEGI_37452' => 'sgi', 'SGA_v2.0_scaffold188G40336' => 'sas', 'SGA_v2.0_scaffold228G43247' => 'sas', 'SGA_v2.0_scaffold280G46853' => 'sas', 'SGA_v2.0_scaffold34G13808' => 'sas', 'SGA_v2.0_scaffold40G15576' => 'sas', 'SGA_v2.0_scaffold611G53188' => 'sas', 'SGA_v2.0_scaffold78G25461' => 'sas', 'SGA_v2.0_scaffold90G27888' => 'sas', 'SHI08601' => 'shi', 'SHI08606' => 'shi', 'SHI17117' => 'shi', 'SHI17119' => 'shi', 'SMO118G0201' => 'smo', 'SMO169G0247' => 'smo', 'SMO176G0006' => 'smo', 'SMO176G0015' => 'smo', 'SMO202G0006' => 'smo', 'SMO240G0050' => 'smo', 'SMO286G0009' => 'smo', 'SMO338G0033' => 'smo', 'SMO356G0533' => 'smo', 'SMO364G0382' => 'smo', 'SMO367G0166' => 'smo', 'SMO367G1098' => 'smo', 'Solyc01g009920.3' => 'sly', 'Solyc01g099300.3' => 'sly', 'Solyc02g084700.3' => 'sly', 'Solyc03g097520.3' => 'sly', 'Solyc06g071580.3' => 'sly', 'Solyc10g081760.3' => 'sly', 'Sopen01g005480' => 'spe', 'Sopen01g042850' => 'spe', 'Sopen02g029370' => 'spe', 'Sopen03g028280' => 'spe', 'Sopen06g027870' => 'spe', 'Sopen10g032270' => 'spe', 'Sp5g18180' => 'spa', 'Sp6g12880' => 'spa', 'Sp6g30850' => 'spa', 'Sp7g22960' => 'spa', 'Sp7g34010' => 'spa', 'SpUn1326_0010' => 'spa', 'TAR371G0242' => 'tar', 'TAR622G0638' => 'tar', 'TAR628G1548' => 'tar', 'TAR629G1079' => 'tar', 'TAR629G3413' => 'tar', 'THA.LOC104804249' => 'tha', 'THA.LOC104808315' => 'tha', 'THA.LOC104809238' => 'tha', 'THA.LOC104825484' => 'tha', 'Thecc.01G025500' => 'tca', 'Thecc.03G015800' => 'tca', 'Thecc.03G018000' => 'tca', 'Thecc.03G134800' => 'tca', 'Thecc.04G014700' => 'tca', 'Thhalv10006991m.g' => 'esa', 'Thhalv10012707m.g' => 'esa', 'Thhalv10015739m.g' => 'esa', 'Thhalv10024553m.g' => 'esa', 'Thhalv10024673m.g' => 'esa', 'Thhalv10029187m.g' => 'esa', 'TPR.G12971' => 'tpr', 'TPR.G29396' => 'tpr', 'TPR.G33376' => 'tpr', 'TPR.G35508' => 'tpr', 'TPR.G35516' => 'tpr', 'TPR.G37317' => 'tpr', 'TPR.G37389' => 'tpr', 'TPR.G37523' => 'tpr', 'TPR.G559' => 'tpr', 'TWI14G0070' => 'twi', 'TWI14G0729' => 'twi', 'TWI18G0596' => 'twi', 'TWI39G0780' => 'twi', 'TWI39G0850' => 'twi', 'TWI73G1052' => 'twi', 'unitig_52.g17485' => 'ugi', 'unitig_61.g26355' => 'ugi', 'vmacro01040' => 'vma', 'vmacro16731' => 'vma', 'vmacro18270' => 'vma', 'vmacro19142' => 'vma', 'vmacro19407' => 'vma', 'vmacro19408' => 'vma', 'vmacro21899' => 'vma', 'vmacro21900' => 'vma', 'vmacro21901' => 'vma', 'VMungo0251G0490' => 'vmu', 'VMungo0251G1748' => 'vmu', 'VMungo1309G0421' => 'vmu', 'Zm00001eb086500' => 'zma', 'Zm00001eb150680' => 'zma', 'Zm00001eb162330' => 'zma', 'Zm00001eb203130' => 'zma', 'Zm00001eb369480' => 'zma', 'Zm00001eb382340' => 'zma', 'Zm00001eb416360' => 'zma' ), 'gf_id' => 'HOM05D000902', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000902' ), 'data_identifier' => 'HOM05D000902', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000902', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '663', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02470' => 'bna', 'A01p16260' => 'bna', 'A02p01680' => 'bna', 'A03p16600' => 'bna', 'A03p55660' => 'bna', 'A03p64160' => 'bna', 'A03p64170' => 'bna', 'A08p31900' => 'bna', 'A09p59530' => 'bna', 'A10p08230' => 'bna', 'A10p25090' => 'bna', 'Aa31LG3G7100' => 'aar', 'Aa31LG3G7110' => 'aar', 'Aa31LG6G13160' => 'aar', 'Aa31LG7G10770' => 'aar', 'Aa31LG7G3830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2723' => 'aag', 'Actinidia08045' => 'ach', 'Actinidia08888' => 'ach', 'Actinidia18333' => 'ach', 'Actinidia19334' => 'ach', 'Actinidia25552' => 'ach', 'Actinidia26089' => 'ach', 'Actinidia30615' => 'ach', 'Actinidia30616' => 'ach', 'Actinidia33083' => 'ach', 'Actinidia35762' => 'ach', 'Ah.02g110620' => 'amhyb', 'Ah.11g046390' => 'amhyb', 'AL1G31670' => 'aly', 'AL6G23730' => 'aly', 'AL7G14740' => 'aly', 'AL7G14750' => 'aly', 'AL7G14760' => 'aly', 'AL7G28220' => 'aly', 'AL8G24940' => 'aly', 'Aqoxy3G01665' => 'aox', 'Aqoxy3G02853' => 'aox', 'Aqoxy5G01513' => 'aox', 'Aqoxy5G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8SKA4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ75LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKDA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0LJZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7REX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZP4YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWX7I5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2QKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS0L9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPCD8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q161UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC7XCF' => 'arhy', 'AT1G19100' => 'ath', 'AT4G24970' => 'ath', 'AT4G36270' => 'ath', 'AT4G36280' => 'ath', 'AT4G36290' => 'ath', 'AT5G13130' => 'ath', 'AT5G50780' => 'ath', 'ATR0582G266' => 'atr', 'ATR0661G195' => 'atr', 'ATR1152G031' => 'atr', 'Atru.chr11.2382' => 'acertr', 'Atru.chr12.2337' => 'acertr', 'Atru.chr3.744' => 'acertr', 'Atru.chr6.1870' => 'acertr', 'Atru.chr9.2515' => 'acertr', 'AUR62004120' => 'cqu', 'AUR62005667' => 'cqu', 'AUR62007634' => 'cqu', 'AUR62008186' => 'cqu', 'AUR62008187' => 'cqu', 'AUR62008188' => 'cqu', 'AUR62027954' => 'cqu', 'AUR62028766' => 'cqu', 'AUR62028767' => 'cqu', 'AUR62028768' => 'cqu', 'AUR62028886' => 'cqu', 'AUR62029563' => 'cqu', 'AUR62038832' => 'cqu', 'BcaB01g04149' => 'bca', 'BcaB03g12940' => 'bca', 'BcaB03g13090' => 'bca', 'BcaB03g14466' => 'bca', 'BcaB05g24035' => 'bca', 'BcaC01g06050' => 'bca', 'BcaC04g19148' => 'bca', 'BcaC04g20761' => 'bca', 'BcaC06g32845' => 'bca', 'BcaC07g41274' => 'bca', 'BcaC09g50827' => 'bca', 'BcaNung00741' => 'bca', 'BcaNung00742' => 'bca', 'BcaNung01859' => 'bca', 'BcaNung03985' => 'bca', 'BcaNung03989' => 'bca', 'BcaNung05661' => 'bca', 'BolC1t00257H' => 'bol', 'BolC1t01956H' => 'bol', 'BolC2t06534H' => 'bol', 'BolC3t14334H' => 'bol', 'BolC5t30451H' => 'bol', 'BolC7t45880H' => 'bol', 'BolC7t46586H' => 'bol', 'BolC8t49301H' => 'bol', 'BolC8t51837H' => 'bol', 'BolC9t56822H' => 'bol', 'BolC9t59235H' => 'bol', 'BraA01t00234Z' => 'bra', 'BraA01t01563Z' => 'bra', 'BraA02t05147Z' => 'bra', 'BraA03t10947Z' => 'bra', 'BraA03t14633Z' => 'bra', 'BraA08t35112Z' => 'bra', 'BraA09t41330Z' => 'bra', 'BraA10t44570Z' => 'bra', 'C01p02670' => 'bna', 'C01p20260' => 'bna', 'C02p05890' => 'bna', 'C03p19530' => 'bna', 'C05p17470' => 'bna', 'C07p53900' => 'bna', 'C07p61630' => 'bna', 'C08p16800' => 'bna', 'C08p42810' => 'bna', 'C09p39480' => 'bna', 'C09p63980' => 'bna', 'CAN.G1001.7' => 'can', 'CAN.G1034.55' => 'can', 'CAN.G143.7' => 'can', 'CAN.G3340.1' => 'can', 'CAN.G358.19' => 'can', 'CAN.G373.2' => 'can', 'CAN.G674.16' => 'can', 'CAN.G674.17' => 'can', 'CAN.G674.18' => 'can', 'CAN.G732.2' => 'can', 'CAN.G732.3' => 'can', 'CAN.G993.39' => 'can', 'CANSAT01G2052' => 'cansat', 'CANSAT80G0070' => 'cansat', 'CANSAT80G0483' => 'cansat', 'CANSAT80G0625' => 'cansat', 'CARHR019690' => 'chi', 'CARHR080280' => 'chi', 'CARHR152750' => 'chi', 'CARHR152760' => 'chi', 'CARHR152770' => 'chi', 'CARHR200340' => 'chi', 'CARHR232370' => 'chi', 'CARHR244670' => 'chi', 'CARHR244680' => 'chi', 'CARHR257520' => 'chi', 'Carub.0001s1872' => 'cru', 'Carub.0006s1130' => 'cru', 'Carub.0007s0396' => 'cru', 'Carub.0007s0397' => 'cru', 'Carub.0007s1608' => 'cru', 'Carub.0008s1068' => 'cru', 'Carub.0008s1077' => 'cru', 'Ca_16158_v3' => 'car', 'Ca_17571_v3' => 'car', 'Ca_21936_v3' => 'car', 'Ca_22350_v3' => 'car', 'CBR_g22445' => 'cbr', 'CBR_g26290' => 'cbr', 'Cc04_g09610' => 'ccan', 'Cc04_g12280' => 'ccan', 'Cc07_g10230' => 'ccan', 'CDE02G0093' => 'cde', 'CDE02G0701' => 'cde', 'CDE04G1050' => 'cde', 'CDE05G1833' => 'cde', 'CDE05G3058' => 'cde', 'CDE05G3380' => 'cde', 'CDE06G0536' => 'cde', 'Cfa006923' => 'cfa', 'Cfa009402' => 'cfa', 'Cfa018751' => 'cfa', 'Cfa019164' => 'cfa', 'Cfa022935' => 'cfa', 'Ciclev10019081m.g' => 'ccl', 'Ciclev10025076m.g' => 'ccl', 'Ciclev10030712m.g' => 'ccl', 'Ciclev10033760m.g' => 'ccl', 'CiPaw.05G105600' => 'cil', 'CiPaw.08G136700' => 'cil', 'CiPaw.11G003900' => 'cil', 'CiPaw.11G023700' => 'cil', 'CiPaw.12G003700' => 'cil', 'ClCG06G017100' => 'cla', 'ClCG06G018110' => 'cla', 'ClCG07G008800' => 'cla', 'ClCG07G015330' => 'cla', 'COL.COLO4_13698' => 'col', 'COL.COLO4_16659' => 'col', 'COL.COLO4_21986' => 'col', 'COL.COLO4_24049' => 'col', 'COL.COLO4_29061' => 'col', 'COL.COLO4_29075' => 'col', 'COL.COLO4_30094' => 'col', 'Cpa.g.c33689' => 'cpa', 'Cpa.g.sc108.39' => 'cpa', 'Cpa.g.sc108.41' => 'cpa', 'Cpa.g.sc1163.1' => 'cpa', 'Cpa.g.sc4.155' => 'cpa', 'Cpa.g.sc6.194' => 'cpa', 'CsaV3_1G000340' => 'csa', 'CsaV3_1G001400' => 'csa', 'CsaV3_4G002220' => 'csa', 'CsaV3_4G005370' => 'csa', 'CSS0007487' => 'camsi', 'CSS0008066' => 'camsi', 'CSS0009120' => 'camsi', 'CSS0015512' => 'camsi', 'CSS0022409' => 'camsi', 'CSS0025358' => 'camsi', 'CSS0044547' => 'camsi', 'DCAR_013057' => 'dca', 'DCAR_015058' => 'dca', 'DCAR_016027' => 'dca', 'DCAR_017327' => 'dca', 'DCAR_020743' => 'dca', 'DCAR_026157' => 'dca', 'DCAR_032339' => 'dca', 'DCAR_032340' => 'dca', 'Dinv11200' => 'din', 'Dinv11201' => 'din', 'Dinv20631' => 'din', 'Dinv23182' => 'din', 'Dinv33466' => 'din', 'Dinv33583' => 'din', 'Dinv38565' => 'din', 'Duzib068G0200' => 'dzi', 'Duzib147G0132' => 'dzi', 'Duzib147G0635' => 'dzi', 'Duzib205G1670' => 'dzi', 'Duzib251G0606' => 'dzi', 'ECA232G3336' => 'eca', 'ECA232G3763' => 'eca', 'ECA232G4845' => 'eca', 'ECA234G1607' => 'eca', 'ECA246G0932' => 'eca', 'ECA247G0781' => 'eca', 'ECA247G1932' => 'eca', 'ECA247G2079' => 'eca', 'ECA247G3338' => 'eca', 'ECA247G4115' => 'eca', 'EL10Ac3g06552' => 'bvu', 'EL10Ac5g10721' => 'bvu', 'EL10Ac5g10722' => 'bvu', 'EL10Ac5g10723' => 'bvu', 'EL10Ac5g11361' => 'bvu', 'EL10Ac6g13553' => 'bvu', 'EL10As8g23872' => 'bvu', 'Eucgr.B00250' => 'egr', 'Eucgr.B00251' => 'egr', 'Eucgr.B03533' => 'egr', 'Eucgr.I02381' => 'egr', 'Eucgr.K02700' => 'egr', 'FAN02G0174' => 'fan', 'FAN02G3146' => 'fan', 'FAN04G1672' => 'fan', 'FAN04G2273' => 'fan', 'FAN05G2791' => 'fan', 'FAN05G4035' => 'fan', 'FAN07G0834' => 'fan', 'FAN08G1198' => 'fan', 'FAN09G4182' => 'fan', 'FAN12G0496' => 'fan', 'FAN13G1027' => 'fan', 'FAN13G2951' => 'fan', 'FAN14G0705' => 'fan', 'FAN14G0720' => 'fan', 'FAN17G0201' => 'fan', 'FAN17G2665' => 'fan', 'FAN18G1456' => 'fan', 'FAN18G1525' => 'fan', 'FAN18G3500' => 'fan', 'FAN28G2670' => 'fan', 'FvH4_1g12391' => 'fve', 'FvH4_4g23220' => 'fve', 'FvH4_5g08810' => 'fve', 'FvH4_5g28960' => 'fve', 'FvH4_6g42820' => 'fve', 'FvH4_6g51110' => 'fve', 'Glyma.02G051802' => 'gma', 'Glyma.04G185300' => 'gma', 'Glyma.05G202900' => 'gma', 'Glyma.08G010300' => 'gma', 'Glyma.16G131900' => 'gma', 'Glyma.17G087900' => 'gma', 'Gohir.A07G048600' => 'ghi', 'Gohir.A11G179000' => 'ghi', 'Gohir.A12G140900' => 'ghi', 'Gohir.A12G140950' => 'ghi', 'Gohir.A12G191700' => 'ghi', 'Gohir.A13G086300' => 'ghi', 'Gohir.D07G052900' => 'ghi', 'Gohir.D11G186600' => 'ghi', 'Gohir.D12G145575' => 'ghi', 'Gohir.D12G145650' => 'ghi', 'Gohir.D12G145725' => 'ghi', 'Gohir.D12G194050' => 'ghi', 'Gohir.D13G091800' => 'ghi', 'Gorai.001G055900' => 'gra', 'Gorai.007G198400' => 'gra', 'Gorai.008G157000' => 'gra', 'Gorai.008G157100' => 'gra', 'Gorai.008G208700' => 'gra', 'Gorai.010G138700' => 'gra', 'GSVIVG01000977001' => 'vvi', 'GSVIVG01007708001' => 'vvi', 'GSVIVG01008587001' => 'vvi', 'GSVIVG01018849001' => 'vvi', 'GSVIVG01032432001' => 'vvi', 'HanXRQChr02g0034131' => 'han', 'HanXRQChr02g0035981' => 'han', 'HanXRQChr02g0035991' => 'han', 'HanXRQChr05g0155611' => 'han', 'HanXRQChr05g0155621' => 'han', 'HanXRQChr08g0236501' => 'han', 'HanXRQChr09g0261321' => 'han', 'HanXRQChr09g0272081' => 'han', 'HanXRQChr10g0310741' => 'han', 'HanXRQChr11g0325591' => 'han', 'HanXRQChr12g0385691' => 'han', 'HanXRQChr13g0387801' => 'han', 'HanXRQChr15g0463011' => 'han', 'Haze_03826' => 'cav', 'Haze_03827' => 'cav', 'Haze_07183' => 'cav', 'Haze_07537' => 'cav', 'Haze_07539' => 'cav', 'Haze_12461' => 'cav', 'Haze_16115' => 'cav', 'Haze_16808' => 'cav', 'Haze_18531' => 'cav', 'Hma1.2p1_0046F.1_g026700' => 'hma', 'Hma1.2p1_0046F.1_g026710' => 'hma', 'Hma1.2p1_0168F.1_g074340' => 'hma', 'Hma1.2p1_0266F.1_g107030' => 'hma', 'Hma1.2p1_0266F.1_g107060' => 'hma', 'Hma1.2p1_0275F.1_g110510' => 'hma', 'Hma1.2p1_0592F.1_g185490' => 'hma', 'Hma1.2p1_0592F.1_g185500' => 'hma', 'Hma1.2p1_0592F.1_g185510' => 'hma', 'Hma1.2p1_0592F.1_g185520' => 'hma', 'Hma1.2p1_0592F.1_g185530' => 'hma', 'Hma1.2p1_0818F.1_g223450' => 'hma', 'HPP92_009708' => 'vpl', 'HPP92_009793' => 'vpl', 'HPP92_009796' => 'vpl', 'HPP92_009797' => 'vpl', 'HPP92_014940' => 'vpl', 'HPP92_014988' => 'vpl', 'Hund02463' => 'sun', 'Hund02760' => 'sun', 'Hund05071' => 'sun', 'Hund10108' => 'sun', 'Hund11204' => 'sun', 'Hund14016' => 'sun', 'Hund16464' => 'sun', 'Lalb_Chr09g0333391' => 'lal', 'Lalb_Chr11g0070461' => 'lal', 'Lalb_Chr12g0201671' => 'lal', 'Lalb_Chr13g0297161' => 'lal', 'Lj1g0002823' => 'lja', 'Lj3C1074T6' => 'lonja', 'Lj4A212T28' => 'lonja', 'Lj4g0005516' => 'lja', 'Lj4g0013705' => 'lja', 'Lj4g0027865' => 'lja', 'Lj5C92G16' => 'lonja', 'Lj5C92T12' => 'lonja', 'Lj7C596T3' => 'lonja', 'Lj9A446G59' => 'lonja', 'Lj9A482G21' => 'lonja', 'Lsat_1_v5_gn_1_28261' => 'lsa', 'Lsat_1_v5_gn_1_28281' => 'lsa', 'Lsat_1_v5_gn_1_32721' => 'lsa', 'Lsat_1_v5_gn_4_151760' => 'lsa', 'Lsat_1_v5_gn_4_2120' => 'lsa', 'Lsat_1_v5_gn_4_75761' => 'lsa', 'Lsat_1_v5_gn_5_10920' => 'lsa', 'Manes.02G099900' => 'mes', 'Manes.11G096200' => 'mes', 'Manes.12G007200' => 'mes', 'Manes.14G048300' => 'mes', 'Manes.17G114700' => 'mes', 'Mapoly0002s0070' => 'mpo', 'Mapoly0029s0099' => 'mpo', 'MBI07_g24742_MAGBIO' => 'mbi', 'MBI10_g27988_MAGBIO' => 'mbi', 'MBI11_g13057_MAGBIO' => 'mbi', 'MD02G1137200' => 'mdo', 'MD06G1137200' => 'mdo', 'MD07G1122300' => 'mdo', 'MD09G1078200' => 'mdo', 'MD13G1123700' => 'mdo', 'MD14G1151900' => 'mdo', 'MD17G1030900' => 'mdo', 'MD17G1068200' => 'mdo', 'MD17G1068600' => 'mdo', 'Medtr3g077540' => 'mtr', 'Medtr4g105530' => 'mtr', 'Medtr8g076580' => 'mtr', 'Medtr8g076590' => 'mtr', 'Medtr8g096410' => 'mtr', 'MELO3C016411.2' => 'cme', 'MELO3C017780.2' => 'cme', 'MELO3C022560.2' => 'cme', 'MELO3C026187.2' => 'cme', 'MELO3C026286.2' => 'cme', 'MELO3C032854.2' => 'cme', 'Migut.H02495' => 'egut', 'Migut.I00561' => 'egut', 'Migut.K01015' => 'egut', 'Migut.K01016' => 'egut', 'Migut.L00743' => 'egut', 'Migut.L00744' => 'egut', 'Migut.L00746' => 'egut', 'Migut.L00798' => 'egut', 'Migut.L00799' => 'egut', 'Migut.N02096' => 'egut', 'MSTRG.11259' => 'ama', 'MSTRG.23142' => 'ama', 'MSTRG.2499' => 'ama', 'Nitab4.5_0000003g0730' => 'nta', 'Nitab4.5_0000137g0020' => 'nta', 'Nitab4.5_0000721g0210' => 'nta', 'Nitab4.5_0000723g0050' => 'nta', 'Nitab4.5_0000913g0070' => 'nta', 'Nitab4.5_0001332g0040' => 'nta', 'Nitab4.5_0001771g0050' => 'nta', 'Nitab4.5_0001918g0050' => 'nta', 'Nitab4.5_0002686g0030' => 'nta', 'Nitab4.5_0003156g0020' => 'nta', 'Nitab4.5_0003383g0040' => 'nta', 'Nitab4.5_0003918g0010' => 'nta', 'Nitab4.5_0006760g0010' => 'nta', 'Nn1g05981' => 'nnu', 'Nn1g06288' => 'nnu', 'Nn3g16371' => 'nnu', 'Nn3g16786' => 'nnu', 'Nn4g22232' => 'nnu', 'Oeu005144.1' => 'oeu', 'Oeu005145.1' => 'oeu', 'Oeu011348.1' => 'oeu', 'Oeu016415.1' => 'oeu', 'Oeu023501.1' => 'oeu', 'Oeu044473.1' => 'oeu', 'Oeu048892.2' => 'oeu', 'Os01g0549200' => 'osa', 'Os02g0469300' => 'osa', 'Os04g0311100' => 'osa', 'Os06g0474900' => 'osa', 'Os10g0181700' => 'osa', 'Os11g0454800' => 'osa', 'Peaxi162Scf00037g00714' => 'pax', 'Peaxi162Scf00084g01217' => 'pax', 'Peaxi162Scf00257g00217' => 'pax', 'Peaxi162Scf00516g00215' => 'pax', 'Peaxi162Scf00689g00123' => 'pax', 'PGR044G2719' => 'pgr', 'PGR083G1360' => 'pgr', 'PGR102G2849' => 'pgr', 'PGR119G2534' => 'pgr', 'PGSC0003DMG400003538' => 'stu', 'PGSC0003DMG400028138' => 'stu', 'PGSC0003DMG400031732' => 'stu', 'PGSC0003DMG400038165' => 'stu', 'Phvul.002G284600' => 'pvu', 'Phvul.003G258200' => 'pvu', 'Phvul.009G176500' => 'pvu', 'Potri.003G167201' => 'ptr', 'Potri.005G118400' => 'ptr', 'Potri.012G089000' => 'ptr', 'Potri.012G102800' => 'ptr', 'Potri.015G079400' => 'ptr', 'Potri.015G100900' => 'ptr', 'Pp3c14_9810' => 'ppa', 'Pp3c15_10450' => 'ppa', 'Pp3c20_19150' => 'ppa', 'Pp3c23_12740' => 'ppa', 'Pp3c23_6310' => 'ppa', 'Pp3c24_3720' => 'ppa', 'Pp3c27_2580' => 'ppa', 'Pp3c9_8990' => 'ppa', 'PRCOL_00002854' => 'pco', 'Prupe.1G221200' => 'ppe', 'Prupe.3G289000' => 'ppe', 'Prupe.5G147000' => 'ppe', 'Prupe.6G157300' => 'ppe', 'Prupe.7G163400' => 'ppe', 'Psat0s2177g0040' => 'psa', 'Psat3g174760' => 'psa', 'Psat3g192160' => 'psa', 'Psat4g058520' => 'psa', 'Psat4g096840' => 'psa', 'Psat7g037320' => 'psa', 'PSO017G1274' => 'pso', 'PSO017G5166' => 'pso', 'PSO063G4558' => 'pso', 'PSO170G4458' => 'pso', 'PSO170G5005' => 'pso', 'PSO210G6156' => 'pso', 'PSO210G6635' => 'pso', 'PSO210G7397' => 'pso', 'PSO210G7700' => 'pso', 'PSO455G0035' => 'pso', 'PSO455G0180' => 'pso', 'PSO478G4515' => 'pso', 'PSO832G1305' => 'pso', 'PSO832G3489' => 'pso', 'QL02p075247' => 'qlo', 'QL03p051148' => 'qlo', 'QL05p010313' => 'qlo', 'QL06p034627' => 'qlo', 'QL10p001889' => 'qlo', 'QL10p010846' => 'qlo', 'RcHm_v2.0_Chr1g0350621' => 'rch', 'RcHm_v2.0_Chr1g0350641' => 'rch', 'RcHm_v2.0_Chr2g0092891' => 'rch', 'RcHm_v2.0_Chr2g0100251' => 'rch', 'RcHm_v2.0_Chr2g0158661' => 'rch', 'RcHm_v2.0_Chr2g0172741' => 'rch', 'RcHm_v2.0_Chr4g0429571' => 'rch', 'RcHm_v2.0_Chr5g0042471' => 'rch', 'RcHm_v2.0_Chr7g0189451' => 'rch', 'Rhsim08G0052000' => 'rsi', 'Rhsim08G0174400' => 'rsi', 'Rhsim08G0193200' => 'rsi', 'Rhsim10G0214800' => 'rsi', 'Rhsim10G0214900' => 'rsi', 'Rhsim10G0215000' => 'rsi', 'Rhsim12G0022900' => 'rsi', 'Rhsim12G0177500' => 'rsi', 'Rhsim12G0177700' => 'rsi', 'Sabra03G0122600' => 'sbr', 'Sabra05G0097400' => 'sbr', 'Sabra12G0064100' => 'sbr', 'Sabra15G0121300' => 'sbr', 'SalBow2G0642' => 'sbo', 'SalBow5G2667' => 'sbo', 'SalBow5G4873' => 'sbo', 'SalBow8G2395' => 'sbo', 'Sc03g0003290' => 'sci', 'Sc10g0010130' => 'sci', 'Sc22g0003650' => 'sci', 'Sed0001603' => 'sed', 'Sed0004259' => 'sed', 'Sed0006789' => 'sed', 'Sed0011838' => 'sed', 'Sed0012964' => 'sed', 'Sed0016383' => 'sed', 'Sed0019010' => 'sed', 'Sed0020188' => 'sed', 'SEGI_04702' => 'sgi', 'SEGI_17231' => 'sgi', 'SEGI_18877' => 'sgi', 'SEGI_25196' => 'sgi', 'SEGI_25515' => 'sgi', 'SEGI_28445' => 'sgi', 'SEGI_37452' => 'sgi', 'SGA_v2.0_scaffold188G40336' => 'sas', 'SGA_v2.0_scaffold228G43247' => 'sas', 'SGA_v2.0_scaffold280G46853' => 'sas', 'SGA_v2.0_scaffold34G13808' => 'sas', 'SGA_v2.0_scaffold40G15576' => 'sas', 'SGA_v2.0_scaffold611G53188' => 'sas', 'SGA_v2.0_scaffold78G25461' => 'sas', 'SGA_v2.0_scaffold90G27888' => 'sas', 'SHI08601' => 'shi', 'SHI08606' => 'shi', 'SHI17117' => 'shi', 'SHI17119' => 'shi', 'SMO118G0201' => 'smo', 'SMO169G0247' => 'smo', 'SMO176G0006' => 'smo', 'SMO176G0015' => 'smo', 'SMO202G0006' => 'smo', 'SMO240G0050' => 'smo', 'SMO286G0009' => 'smo', 'SMO338G0033' => 'smo', 'SMO356G0533' => 'smo', 'SMO364G0382' => 'smo', 'SMO367G0166' => 'smo', 'SMO367G1098' => 'smo', 'Solyc01g009920.3' => 'sly', 'Solyc01g099300.3' => 'sly', 'Solyc02g084700.3' => 'sly', 'Solyc03g097520.3' => 'sly', 'Solyc06g071580.3' => 'sly', 'Solyc10g081760.3' => 'sly', 'Sopen01g005480' => 'spe', 'Sopen01g042850' => 'spe', 'Sopen02g029370' => 'spe', 'Sopen03g028280' => 'spe', 'Sopen06g027870' => 'spe', 'Sopen10g032270' => 'spe', 'Sp5g18180' => 'spa', 'Sp6g12880' => 'spa', 'Sp6g30850' => 'spa', 'Sp7g22960' => 'spa', 'Sp7g34010' => 'spa', 'SpUn1326_0010' => 'spa', 'TAR371G0242' => 'tar', 'TAR622G0638' => 'tar', 'TAR628G1548' => 'tar', 'TAR629G1079' => 'tar', 'TAR629G3413' => 'tar', 'THA.LOC104804249' => 'tha', 'THA.LOC104808315' => 'tha', 'THA.LOC104809238' => 'tha', 'THA.LOC104825484' => 'tha', 'Thecc.01G025500' => 'tca', 'Thecc.03G015800' => 'tca', 'Thecc.03G018000' => 'tca', 'Thecc.03G134800' => 'tca', 'Thecc.04G014700' => 'tca', 'Thhalv10006991m.g' => 'esa', 'Thhalv10012707m.g' => 'esa', 'Thhalv10015739m.g' => 'esa', 'Thhalv10024553m.g' => 'esa', 'Thhalv10024673m.g' => 'esa', 'Thhalv10029187m.g' => 'esa', 'TPR.G12971' => 'tpr', 'TPR.G29396' => 'tpr', 'TPR.G33376' => 'tpr', 'TPR.G35508' => 'tpr', 'TPR.G35516' => 'tpr', 'TPR.G37317' => 'tpr', 'TPR.G37389' => 'tpr', 'TPR.G37523' => 'tpr', 'TPR.G559' => 'tpr', 'TWI14G0070' => 'twi', 'TWI14G0729' => 'twi', 'TWI18G0596' => 'twi', 'TWI39G0780' => 'twi', 'TWI39G0850' => 'twi', 'TWI73G1052' => 'twi', 'unitig_52.g17485' => 'ugi', 'unitig_61.g26355' => 'ugi', 'vmacro01040' => 'vma', 'vmacro16731' => 'vma', 'vmacro18270' => 'vma', 'vmacro19142' => 'vma', 'vmacro19407' => 'vma', 'vmacro19408' => 'vma', 'vmacro21899' => 'vma', 'vmacro21900' => 'vma', 'vmacro21901' => 'vma', 'VMungo0251G0490' => 'vmu', 'VMungo0251G1748' => 'vmu', 'VMungo1309G0421' => 'vmu', 'Zm00001eb086500' => 'zma', 'Zm00001eb150680' => 'zma', 'Zm00001eb162330' => 'zma', 'Zm00001eb203130' => 'zma', 'Zm00001eb369480' => 'zma', 'Zm00001eb382340' => 'zma', 'Zm00001eb416360' => 'zma' ) $gf_id = 'HOM05D000902' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000902' ) $data_identifier = 'HOM05D000902' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 13, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 10, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 6, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 9, 'hma' => (int) 12, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 4, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 6, 'ppa' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 6, 'rch' => (int) 9, 'rsi' => (int) 9, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 12, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 3, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416360' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000902', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '663', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02470' => 'bna', 'A01p16260' => 'bna', 'A02p01680' => 'bna', 'A03p16600' => 'bna', 'A03p55660' => 'bna', 'A03p64160' => 'bna', 'A03p64170' => 'bna', 'A08p31900' => 'bna', 'A09p59530' => 'bna', 'A10p08230' => 'bna', 'A10p25090' => 'bna', 'Aa31LG3G7100' => 'aar', 'Aa31LG3G7110' => 'aar', 'Aa31LG6G13160' => 'aar', 'Aa31LG7G10770' => 'aar', 'Aa31LG7G3830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2723' => 'aag', 'Actinidia08045' => 'ach', 'Actinidia08888' => 'ach', 'Actinidia18333' => 'ach', 'Actinidia19334' => 'ach', 'Actinidia25552' => 'ach', 'Actinidia26089' => 'ach', 'Actinidia30615' => 'ach', 'Actinidia30616' => 'ach', 'Actinidia33083' => 'ach', 'Actinidia35762' => 'ach', 'Ah.02g110620' => 'amhyb', 'Ah.11g046390' => 'amhyb', 'AL1G31670' => 'aly', 'AL6G23730' => 'aly', 'AL7G14740' => 'aly', 'AL7G14750' => 'aly', 'AL7G14760' => 'aly', 'AL7G28220' => 'aly', 'AL8G24940' => 'aly', 'Aqoxy3G01665' => 'aox', 'Aqoxy3G02853' => 'aox', 'Aqoxy5G01513' => 'aox', 'Aqoxy5G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8SKA4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ75LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKDA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0LJZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7REX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZP4YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWX7I5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2QKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS0L9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPCD8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q161UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC7XCF' => 'arhy', 'AT1G19100' => 'ath', 'AT4G24970' => 'ath', 'AT4G36270' => 'ath', 'AT4G36280' => 'ath', 'AT4G36290' => 'ath', 'AT5G13130' => 'ath', 'AT5G50780' => 'ath', 'ATR0582G266' => 'atr', 'ATR0661G195' => 'atr', 'ATR1152G031' => 'atr', 'Atru.chr11.2382' => 'acertr', 'Atru.chr12.2337' => 'acertr', 'Atru.chr3.744' => 'acertr', 'Atru.chr6.1870' => 'acertr', 'Atru.chr9.2515' => 'acertr', 'AUR62004120' => 'cqu', 'AUR62005667' => 'cqu', 'AUR62007634' => 'cqu', 'AUR62008186' => 'cqu', 'AUR62008187' => 'cqu', 'AUR62008188' => 'cqu', 'AUR62027954' => 'cqu', 'AUR62028766' => 'cqu', 'AUR62028767' => 'cqu', 'AUR62028768' => 'cqu', 'AUR62028886' => 'cqu', 'AUR62029563' => 'cqu', 'AUR62038832' => 'cqu', 'BcaB01g04149' => 'bca', 'BcaB03g12940' => 'bca', 'BcaB03g13090' => 'bca', 'BcaB03g14466' => 'bca', 'BcaB05g24035' => 'bca', 'BcaC01g06050' => 'bca', 'BcaC04g19148' => 'bca', 'BcaC04g20761' => 'bca', 'BcaC06g32845' => 'bca', 'BcaC07g41274' => 'bca', 'BcaC09g50827' => 'bca', 'BcaNung00741' => 'bca', 'BcaNung00742' => 'bca', 'BcaNung01859' => 'bca', 'BcaNung03985' => 'bca', 'BcaNung03989' => 'bca', 'BcaNung05661' => 'bca', 'BolC1t00257H' => 'bol', 'BolC1t01956H' => 'bol', 'BolC2t06534H' => 'bol', 'BolC3t14334H' => 'bol', 'BolC5t30451H' => 'bol', 'BolC7t45880H' => 'bol', 'BolC7t46586H' => 'bol', 'BolC8t49301H' => 'bol', 'BolC8t51837H' => 'bol', 'BolC9t56822H' => 'bol', 'BolC9t59235H' => 'bol', 'BraA01t00234Z' => 'bra', 'BraA01t01563Z' => 'bra', 'BraA02t05147Z' => 'bra', 'BraA03t10947Z' => 'bra', 'BraA03t14633Z' => 'bra', 'BraA08t35112Z' => 'bra', 'BraA09t41330Z' => 'bra', 'BraA10t44570Z' => 'bra', 'C01p02670' => 'bna', 'C01p20260' => 'bna', 'C02p05890' => 'bna', 'C03p19530' => 'bna', 'C05p17470' => 'bna', 'C07p53900' => 'bna', 'C07p61630' => 'bna', 'C08p16800' => 'bna', 'C08p42810' => 'bna', 'C09p39480' => 'bna', 'C09p63980' => 'bna', 'CAN.G1001.7' => 'can', 'CAN.G1034.55' => 'can', 'CAN.G143.7' => 'can', 'CAN.G3340.1' => 'can', 'CAN.G358.19' => 'can', 'CAN.G373.2' => 'can', 'CAN.G674.16' => 'can', 'CAN.G674.17' => 'can', 'CAN.G674.18' => 'can', 'CAN.G732.2' => 'can', 'CAN.G732.3' => 'can', 'CAN.G993.39' => 'can', 'CANSAT01G2052' => 'cansat', 'CANSAT80G0070' => 'cansat', 'CANSAT80G0483' => 'cansat', 'CANSAT80G0625' => 'cansat', 'CARHR019690' => 'chi', 'CARHR080280' => 'chi', 'CARHR152750' => 'chi', 'CARHR152760' => 'chi', 'CARHR152770' => 'chi', 'CARHR200340' => 'chi', 'CARHR232370' => 'chi', 'CARHR244670' => 'chi', 'CARHR244680' => 'chi', 'CARHR257520' => 'chi', 'Carub.0001s1872' => 'cru', 'Carub.0006s1130' => 'cru', 'Carub.0007s0396' => 'cru', 'Carub.0007s0397' => 'cru', 'Carub.0007s1608' => 'cru', 'Carub.0008s1068' => 'cru', 'Carub.0008s1077' => 'cru', 'Ca_16158_v3' => 'car', 'Ca_17571_v3' => 'car', 'Ca_21936_v3' => 'car', 'Ca_22350_v3' => 'car', 'CBR_g22445' => 'cbr', 'CBR_g26290' => 'cbr', 'Cc04_g09610' => 'ccan', 'Cc04_g12280' => 'ccan', 'Cc07_g10230' => 'ccan', 'CDE02G0093' => 'cde', 'CDE02G0701' => 'cde', 'CDE04G1050' => 'cde', 'CDE05G1833' => 'cde', 'CDE05G3058' => 'cde', 'CDE05G3380' => 'cde', 'CDE06G0536' => 'cde', 'Cfa006923' => 'cfa', 'Cfa009402' => 'cfa', 'Cfa018751' => 'cfa', 'Cfa019164' => 'cfa', 'Cfa022935' => 'cfa', 'Ciclev10019081m.g' => 'ccl', 'Ciclev10025076m.g' => 'ccl', 'Ciclev10030712m.g' => 'ccl', 'Ciclev10033760m.g' => 'ccl', 'CiPaw.05G105600' => 'cil', 'CiPaw.08G136700' => 'cil', 'CiPaw.11G003900' => 'cil', 'CiPaw.11G023700' => 'cil', 'CiPaw.12G003700' => 'cil', 'ClCG06G017100' => 'cla', 'ClCG06G018110' => 'cla', 'ClCG07G008800' => 'cla', 'ClCG07G015330' => 'cla', 'COL.COLO4_13698' => 'col', 'COL.COLO4_16659' => 'col', 'COL.COLO4_21986' => 'col', 'COL.COLO4_24049' => 'col', 'COL.COLO4_29061' => 'col', 'COL.COLO4_29075' => 'col', 'COL.COLO4_30094' => 'col', 'Cpa.g.c33689' => 'cpa', 'Cpa.g.sc108.39' => 'cpa', 'Cpa.g.sc108.41' => 'cpa', 'Cpa.g.sc1163.1' => 'cpa', 'Cpa.g.sc4.155' => 'cpa', 'Cpa.g.sc6.194' => 'cpa', 'CsaV3_1G000340' => 'csa', 'CsaV3_1G001400' => 'csa', 'CsaV3_4G002220' => 'csa', 'CsaV3_4G005370' => 'csa', 'CSS0007487' => 'camsi', 'CSS0008066' => 'camsi', 'CSS0009120' => 'camsi', 'CSS0015512' => 'camsi', 'CSS0022409' => 'camsi', 'CSS0025358' => 'camsi', 'CSS0044547' => 'camsi', 'DCAR_013057' => 'dca', 'DCAR_015058' => 'dca', 'DCAR_016027' => 'dca', 'DCAR_017327' => 'dca', 'DCAR_020743' => 'dca', 'DCAR_026157' => 'dca', 'DCAR_032339' => 'dca', 'DCAR_032340' => 'dca', 'Dinv11200' => 'din', 'Dinv11201' => 'din', 'Dinv20631' => 'din', 'Dinv23182' => 'din', 'Dinv33466' => 'din', 'Dinv33583' => 'din', 'Dinv38565' => 'din', 'Duzib068G0200' => 'dzi', 'Duzib147G0132' => 'dzi', 'Duzib147G0635' => 'dzi', 'Duzib205G1670' => 'dzi', 'Duzib251G0606' => 'dzi', 'ECA232G3336' => 'eca', 'ECA232G3763' => 'eca', 'ECA232G4845' => 'eca', 'ECA234G1607' => 'eca', 'ECA246G0932' => 'eca', 'ECA247G0781' => 'eca', 'ECA247G1932' => 'eca', 'ECA247G2079' => 'eca', 'ECA247G3338' => 'eca', 'ECA247G4115' => 'eca', 'EL10Ac3g06552' => 'bvu', 'EL10Ac5g10721' => 'bvu', 'EL10Ac5g10722' => 'bvu', 'EL10Ac5g10723' => 'bvu', 'EL10Ac5g11361' => 'bvu', 'EL10Ac6g13553' => 'bvu', 'EL10As8g23872' => 'bvu', 'Eucgr.B00250' => 'egr', 'Eucgr.B00251' => 'egr', 'Eucgr.B03533' => 'egr', 'Eucgr.I02381' => 'egr', 'Eucgr.K02700' => 'egr', 'FAN02G0174' => 'fan', 'FAN02G3146' => 'fan', 'FAN04G1672' => 'fan', 'FAN04G2273' => 'fan', 'FAN05G2791' => 'fan', 'FAN05G4035' => 'fan', 'FAN07G0834' => 'fan', 'FAN08G1198' => 'fan', 'FAN09G4182' => 'fan', 'FAN12G0496' => 'fan', 'FAN13G1027' => 'fan', 'FAN13G2951' => 'fan', 'FAN14G0705' => 'fan', 'FAN14G0720' => 'fan', 'FAN17G0201' => 'fan', 'FAN17G2665' => 'fan', 'FAN18G1456' => 'fan', 'FAN18G1525' => 'fan', 'FAN18G3500' => 'fan', 'FAN28G2670' => 'fan', 'FvH4_1g12391' => 'fve', 'FvH4_4g23220' => 'fve', 'FvH4_5g08810' => 'fve', 'FvH4_5g28960' => 'fve', 'FvH4_6g42820' => 'fve', 'FvH4_6g51110' => 'fve', 'Glyma.02G051802' => 'gma', 'Glyma.04G185300' => 'gma', 'Glyma.05G202900' => 'gma', 'Glyma.08G010300' => 'gma', 'Glyma.16G131900' => 'gma', 'Glyma.17G087900' => 'gma', 'Gohir.A07G048600' => 'ghi', 'Gohir.A11G179000' => 'ghi', 'Gohir.A12G140900' => 'ghi', 'Gohir.A12G140950' => 'ghi', 'Gohir.A12G191700' => 'ghi', 'Gohir.A13G086300' => 'ghi', 'Gohir.D07G052900' => 'ghi', 'Gohir.D11G186600' => 'ghi', 'Gohir.D12G145575' => 'ghi', 'Gohir.D12G145650' => 'ghi', 'Gohir.D12G145725' => 'ghi', 'Gohir.D12G194050' => 'ghi', 'Gohir.D13G091800' => 'ghi', 'Gorai.001G055900' => 'gra', 'Gorai.007G198400' => 'gra', 'Gorai.008G157000' => 'gra', 'Gorai.008G157100' => 'gra', 'Gorai.008G208700' => 'gra', 'Gorai.010G138700' => 'gra', 'GSVIVG01000977001' => 'vvi', 'GSVIVG01007708001' => 'vvi', 'GSVIVG01008587001' => 'vvi', 'GSVIVG01018849001' => 'vvi', 'GSVIVG01032432001' => 'vvi', 'HanXRQChr02g0034131' => 'han', 'HanXRQChr02g0035981' => 'han', 'HanXRQChr02g0035991' => 'han', 'HanXRQChr05g0155611' => 'han', 'HanXRQChr05g0155621' => 'han', 'HanXRQChr08g0236501' => 'han', 'HanXRQChr09g0261321' => 'han', 'HanXRQChr09g0272081' => 'han', 'HanXRQChr10g0310741' => 'han', 'HanXRQChr11g0325591' => 'han', 'HanXRQChr12g0385691' => 'han', 'HanXRQChr13g0387801' => 'han', 'HanXRQChr15g0463011' => 'han', 'Haze_03826' => 'cav', 'Haze_03827' => 'cav', 'Haze_07183' => 'cav', 'Haze_07537' => 'cav', 'Haze_07539' => 'cav', 'Haze_12461' => 'cav', 'Haze_16115' => 'cav', 'Haze_16808' => 'cav', 'Haze_18531' => 'cav', 'Hma1.2p1_0046F.1_g026700' => 'hma', 'Hma1.2p1_0046F.1_g026710' => 'hma', 'Hma1.2p1_0168F.1_g074340' => 'hma', 'Hma1.2p1_0266F.1_g107030' => 'hma', 'Hma1.2p1_0266F.1_g107060' => 'hma', 'Hma1.2p1_0275F.1_g110510' => 'hma', 'Hma1.2p1_0592F.1_g185490' => 'hma', 'Hma1.2p1_0592F.1_g185500' => 'hma', 'Hma1.2p1_0592F.1_g185510' => 'hma', 'Hma1.2p1_0592F.1_g185520' => 'hma', 'Hma1.2p1_0592F.1_g185530' => 'hma', 'Hma1.2p1_0818F.1_g223450' => 'hma', 'HPP92_009708' => 'vpl', 'HPP92_009793' => 'vpl', 'HPP92_009796' => 'vpl', 'HPP92_009797' => 'vpl', 'HPP92_014940' => 'vpl', 'HPP92_014988' => 'vpl', 'Hund02463' => 'sun', 'Hund02760' => 'sun', 'Hund05071' => 'sun', 'Hund10108' => 'sun', 'Hund11204' => 'sun', 'Hund14016' => 'sun', 'Hund16464' => 'sun', 'Lalb_Chr09g0333391' => 'lal', 'Lalb_Chr11g0070461' => 'lal', 'Lalb_Chr12g0201671' => 'lal', 'Lalb_Chr13g0297161' => 'lal', 'Lj1g0002823' => 'lja', 'Lj3C1074T6' => 'lonja', 'Lj4A212T28' => 'lonja', 'Lj4g0005516' => 'lja', 'Lj4g0013705' => 'lja', 'Lj4g0027865' => 'lja', 'Lj5C92G16' => 'lonja', 'Lj5C92T12' => 'lonja', 'Lj7C596T3' => 'lonja', 'Lj9A446G59' => 'lonja', 'Lj9A482G21' => 'lonja', 'Lsat_1_v5_gn_1_28261' => 'lsa', 'Lsat_1_v5_gn_1_28281' => 'lsa', 'Lsat_1_v5_gn_1_32721' => 'lsa', 'Lsat_1_v5_gn_4_151760' => 'lsa', 'Lsat_1_v5_gn_4_2120' => 'lsa', 'Lsat_1_v5_gn_4_75761' => 'lsa', 'Lsat_1_v5_gn_5_10920' => 'lsa', 'Manes.02G099900' => 'mes', 'Manes.11G096200' => 'mes', 'Manes.12G007200' => 'mes', 'Manes.14G048300' => 'mes', 'Manes.17G114700' => 'mes', 'Mapoly0002s0070' => 'mpo', 'Mapoly0029s0099' => 'mpo', 'MBI07_g24742_MAGBIO' => 'mbi', 'MBI10_g27988_MAGBIO' => 'mbi', 'MBI11_g13057_MAGBIO' => 'mbi', 'MD02G1137200' => 'mdo', 'MD06G1137200' => 'mdo', 'MD07G1122300' => 'mdo', 'MD09G1078200' => 'mdo', 'MD13G1123700' => 'mdo', 'MD14G1151900' => 'mdo', 'MD17G1030900' => 'mdo', 'MD17G1068200' => 'mdo', 'MD17G1068600' => 'mdo', 'Medtr3g077540' => 'mtr', 'Medtr4g105530' => 'mtr', 'Medtr8g076580' => 'mtr', 'Medtr8g076590' => 'mtr', 'Medtr8g096410' => 'mtr', 'MELO3C016411.2' => 'cme', 'MELO3C017780.2' => 'cme', 'MELO3C022560.2' => 'cme', 'MELO3C026187.2' => 'cme', 'MELO3C026286.2' => 'cme', 'MELO3C032854.2' => 'cme', 'Migut.H02495' => 'egut', 'Migut.I00561' => 'egut', 'Migut.K01015' => 'egut', 'Migut.K01016' => 'egut', 'Migut.L00743' => 'egut', 'Migut.L00744' => 'egut', 'Migut.L00746' => 'egut', 'Migut.L00798' => 'egut', 'Migut.L00799' => 'egut', 'Migut.N02096' => 'egut', 'MSTRG.11259' => 'ama', 'MSTRG.23142' => 'ama', 'MSTRG.2499' => 'ama', 'Nitab4.5_0000003g0730' => 'nta', 'Nitab4.5_0000137g0020' => 'nta', 'Nitab4.5_0000721g0210' => 'nta', 'Nitab4.5_0000723g0050' => 'nta', 'Nitab4.5_0000913g0070' => 'nta', 'Nitab4.5_0001332g0040' => 'nta', 'Nitab4.5_0001771g0050' => 'nta', 'Nitab4.5_0001918g0050' => 'nta', 'Nitab4.5_0002686g0030' => 'nta', 'Nitab4.5_0003156g0020' => 'nta', 'Nitab4.5_0003383g0040' => 'nta', 'Nitab4.5_0003918g0010' => 'nta', 'Nitab4.5_0006760g0010' => 'nta', 'Nn1g05981' => 'nnu', 'Nn1g06288' => 'nnu', 'Nn3g16371' => 'nnu', 'Nn3g16786' => 'nnu', 'Nn4g22232' => 'nnu', 'Oeu005144.1' => 'oeu', 'Oeu005145.1' => 'oeu', 'Oeu011348.1' => 'oeu', 'Oeu016415.1' => 'oeu', 'Oeu023501.1' => 'oeu', 'Oeu044473.1' => 'oeu', 'Oeu048892.2' => 'oeu', 'Os01g0549200' => 'osa', 'Os02g0469300' => 'osa', 'Os04g0311100' => 'osa', 'Os06g0474900' => 'osa', 'Os10g0181700' => 'osa', 'Os11g0454800' => 'osa', 'Peaxi162Scf00037g00714' => 'pax', 'Peaxi162Scf00084g01217' => 'pax', 'Peaxi162Scf00257g00217' => 'pax', 'Peaxi162Scf00516g00215' => 'pax', 'Peaxi162Scf00689g00123' => 'pax', 'PGR044G2719' => 'pgr', 'PGR083G1360' => 'pgr', 'PGR102G2849' => 'pgr', 'PGR119G2534' => 'pgr', 'PGSC0003DMG400003538' => 'stu', 'PGSC0003DMG400028138' => 'stu', 'PGSC0003DMG400031732' => 'stu', 'PGSC0003DMG400038165' => 'stu', 'Phvul.002G284600' => 'pvu', 'Phvul.003G258200' => 'pvu', 'Phvul.009G176500' => 'pvu', 'Potri.003G167201' => 'ptr', 'Potri.005G118400' => 'ptr', 'Potri.012G089000' => 'ptr', 'Potri.012G102800' => 'ptr', 'Potri.015G079400' => 'ptr', 'Potri.015G100900' => 'ptr', 'Pp3c14_9810' => 'ppa', 'Pp3c15_10450' => 'ppa', 'Pp3c20_19150' => 'ppa', 'Pp3c23_12740' => 'ppa', 'Pp3c23_6310' => 'ppa', 'Pp3c24_3720' => 'ppa', 'Pp3c27_2580' => 'ppa', 'Pp3c9_8990' => 'ppa', 'PRCOL_00002854' => 'pco', 'Prupe.1G221200' => 'ppe', 'Prupe.3G289000' => 'ppe', 'Prupe.5G147000' => 'ppe', 'Prupe.6G157300' => 'ppe', 'Prupe.7G163400' => 'ppe', 'Psat0s2177g0040' => 'psa', 'Psat3g174760' => 'psa', 'Psat3g192160' => 'psa', 'Psat4g058520' => 'psa', 'Psat4g096840' => 'psa', 'Psat7g037320' => 'psa', 'PSO017G1274' => 'pso', 'PSO017G5166' => 'pso', 'PSO063G4558' => 'pso', 'PSO170G4458' => 'pso', 'PSO170G5005' => 'pso', 'PSO210G6156' => 'pso', 'PSO210G6635' => 'pso', 'PSO210G7397' => 'pso', 'PSO210G7700' => 'pso', 'PSO455G0035' => 'pso', 'PSO455G0180' => 'pso', 'PSO478G4515' => 'pso', 'PSO832G1305' => 'pso', 'PSO832G3489' => 'pso', 'QL02p075247' => 'qlo', 'QL03p051148' => 'qlo', 'QL05p010313' => 'qlo', 'QL06p034627' => 'qlo', 'QL10p001889' => 'qlo', 'QL10p010846' => 'qlo', 'RcHm_v2.0_Chr1g0350621' => 'rch', 'RcHm_v2.0_Chr1g0350641' => 'rch', 'RcHm_v2.0_Chr2g0092891' => 'rch', 'RcHm_v2.0_Chr2g0100251' => 'rch', 'RcHm_v2.0_Chr2g0158661' => 'rch', 'RcHm_v2.0_Chr2g0172741' => 'rch', 'RcHm_v2.0_Chr4g0429571' => 'rch', 'RcHm_v2.0_Chr5g0042471' => 'rch', 'RcHm_v2.0_Chr7g0189451' => 'rch', 'Rhsim08G0052000' => 'rsi', 'Rhsim08G0174400' => 'rsi', 'Rhsim08G0193200' => 'rsi', 'Rhsim10G0214800' => 'rsi', 'Rhsim10G0214900' => 'rsi', 'Rhsim10G0215000' => 'rsi', 'Rhsim12G0022900' => 'rsi', 'Rhsim12G0177500' => 'rsi', 'Rhsim12G0177700' => 'rsi', 'Sabra03G0122600' => 'sbr', 'Sabra05G0097400' => 'sbr', 'Sabra12G0064100' => 'sbr', 'Sabra15G0121300' => 'sbr', 'SalBow2G0642' => 'sbo', 'SalBow5G2667' => 'sbo', 'SalBow5G4873' => 'sbo', 'SalBow8G2395' => 'sbo', 'Sc03g0003290' => 'sci', 'Sc10g0010130' => 'sci', 'Sc22g0003650' => 'sci', 'Sed0001603' => 'sed', 'Sed0004259' => 'sed', 'Sed0006789' => 'sed', 'Sed0011838' => 'sed', 'Sed0012964' => 'sed', 'Sed0016383' => 'sed', 'Sed0019010' => 'sed', 'Sed0020188' => 'sed', 'SEGI_04702' => 'sgi', 'SEGI_17231' => 'sgi', 'SEGI_18877' => 'sgi', 'SEGI_25196' => 'sgi', 'SEGI_25515' => 'sgi', 'SEGI_28445' => 'sgi', 'SEGI_37452' => 'sgi', 'SGA_v2.0_scaffold188G40336' => 'sas', 'SGA_v2.0_scaffold228G43247' => 'sas', 'SGA_v2.0_scaffold280G46853' => 'sas', 'SGA_v2.0_scaffold34G13808' => 'sas', 'SGA_v2.0_scaffold40G15576' => 'sas', 'SGA_v2.0_scaffold611G53188' => 'sas', 'SGA_v2.0_scaffold78G25461' => 'sas', 'SGA_v2.0_scaffold90G27888' => 'sas', 'SHI08601' => 'shi', 'SHI08606' => 'shi', 'SHI17117' => 'shi', 'SHI17119' => 'shi', 'SMO118G0201' => 'smo', 'SMO169G0247' => 'smo', 'SMO176G0006' => 'smo', 'SMO176G0015' => 'smo', 'SMO202G0006' => 'smo', 'SMO240G0050' => 'smo', 'SMO286G0009' => 'smo', 'SMO338G0033' => 'smo', 'SMO356G0533' => 'smo', 'SMO364G0382' => 'smo', 'SMO367G0166' => 'smo', 'SMO367G1098' => 'smo', 'Solyc01g009920.3' => 'sly', 'Solyc01g099300.3' => 'sly', 'Solyc02g084700.3' => 'sly', 'Solyc03g097520.3' => 'sly', 'Solyc06g071580.3' => 'sly', 'Solyc10g081760.3' => 'sly', 'Sopen01g005480' => 'spe', 'Sopen01g042850' => 'spe', 'Sopen02g029370' => 'spe', 'Sopen03g028280' => 'spe', 'Sopen06g027870' => 'spe', 'Sopen10g032270' => 'spe', 'Sp5g18180' => 'spa', 'Sp6g12880' => 'spa', 'Sp6g30850' => 'spa', 'Sp7g22960' => 'spa', 'Sp7g34010' => 'spa', 'SpUn1326_0010' => 'spa', 'TAR371G0242' => 'tar', 'TAR622G0638' => 'tar', 'TAR628G1548' => 'tar', 'TAR629G1079' => 'tar', 'TAR629G3413' => 'tar', 'THA.LOC104804249' => 'tha', 'THA.LOC104808315' => 'tha', 'THA.LOC104809238' => 'tha', 'THA.LOC104825484' => 'tha', 'Thecc.01G025500' => 'tca', 'Thecc.03G015800' => 'tca', 'Thecc.03G018000' => 'tca', 'Thecc.03G134800' => 'tca', 'Thecc.04G014700' => 'tca', 'Thhalv10006991m.g' => 'esa', 'Thhalv10012707m.g' => 'esa', 'Thhalv10015739m.g' => 'esa', 'Thhalv10024553m.g' => 'esa', 'Thhalv10024673m.g' => 'esa', 'Thhalv10029187m.g' => 'esa', 'TPR.G12971' => 'tpr', 'TPR.G29396' => 'tpr', 'TPR.G33376' => 'tpr', 'TPR.G35508' => 'tpr', 'TPR.G35516' => 'tpr', 'TPR.G37317' => 'tpr', 'TPR.G37389' => 'tpr', 'TPR.G37523' => 'tpr', 'TPR.G559' => 'tpr', 'TWI14G0070' => 'twi', 'TWI14G0729' => 'twi', 'TWI18G0596' => 'twi', 'TWI39G0780' => 'twi', 'TWI39G0850' => 'twi', 'TWI73G1052' => 'twi', 'unitig_52.g17485' => 'ugi', 'unitig_61.g26355' => 'ugi', 'vmacro01040' => 'vma', 'vmacro16731' => 'vma', 'vmacro18270' => 'vma', 'vmacro19142' => 'vma', 'vmacro19407' => 'vma', 'vmacro19408' => 'vma', 'vmacro21899' => 'vma', 'vmacro21900' => 'vma', 'vmacro21901' => 'vma', 'VMungo0251G0490' => 'vmu', 'VMungo0251G1748' => 'vmu', 'VMungo1309G0421' => 'vmu', 'Zm00001eb086500' => 'zma', 'Zm00001eb150680' => 'zma', 'Zm00001eb162330' => 'zma', 'Zm00001eb203130' => 'zma', 'Zm00001eb369480' => 'zma', 'Zm00001eb382340' => 'zma', 'Zm00001eb416360' => 'zma' ), 'gf_id' => 'HOM05D000902', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000902' ), 'data_identifier' => 'HOM05D000902', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000902', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '663', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02470' => 'bna', 'A01p16260' => 'bna', 'A02p01680' => 'bna', 'A03p16600' => 'bna', 'A03p55660' => 'bna', 'A03p64160' => 'bna', 'A03p64170' => 'bna', 'A08p31900' => 'bna', 'A09p59530' => 'bna', 'A10p08230' => 'bna', 'A10p25090' => 'bna', 'Aa31LG3G7100' => 'aar', 'Aa31LG3G7110' => 'aar', 'Aa31LG6G13160' => 'aar', 'Aa31LG7G10770' => 'aar', 'Aa31LG7G3830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2723' => 'aag', 'Actinidia08045' => 'ach', 'Actinidia08888' => 'ach', 'Actinidia18333' => 'ach', 'Actinidia19334' => 'ach', 'Actinidia25552' => 'ach', 'Actinidia26089' => 'ach', 'Actinidia30615' => 'ach', 'Actinidia30616' => 'ach', 'Actinidia33083' => 'ach', 'Actinidia35762' => 'ach', 'Ah.02g110620' => 'amhyb', 'Ah.11g046390' => 'amhyb', 'AL1G31670' => 'aly', 'AL6G23730' => 'aly', 'AL7G14740' => 'aly', 'AL7G14750' => 'aly', 'AL7G14760' => 'aly', 'AL7G28220' => 'aly', 'AL8G24940' => 'aly', 'Aqoxy3G01665' => 'aox', 'Aqoxy3G02853' => 'aox', 'Aqoxy5G01513' => 'aox', 'Aqoxy5G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8SKA4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ75LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKDA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0LJZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7REX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZP4YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWX7I5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2QKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS0L9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPCD8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q161UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC7XCF' => 'arhy', 'AT1G19100' => 'ath', 'AT4G24970' => 'ath', 'AT4G36270' => 'ath', 'AT4G36280' => 'ath', 'AT4G36290' => 'ath', 'AT5G13130' => 'ath', 'AT5G50780' => 'ath', 'ATR0582G266' => 'atr', 'ATR0661G195' => 'atr', 'ATR1152G031' => 'atr', 'Atru.chr11.2382' => 'acertr', 'Atru.chr12.2337' => 'acertr', 'Atru.chr3.744' => 'acertr', 'Atru.chr6.1870' => 'acertr', 'Atru.chr9.2515' => 'acertr', 'AUR62004120' => 'cqu', 'AUR62005667' => 'cqu', 'AUR62007634' => 'cqu', 'AUR62008186' => 'cqu', 'AUR62008187' => 'cqu', 'AUR62008188' => 'cqu', 'AUR62027954' => 'cqu', 'AUR62028766' => 'cqu', 'AUR62028767' => 'cqu', 'AUR62028768' => 'cqu', 'AUR62028886' => 'cqu', 'AUR62029563' => 'cqu', 'AUR62038832' => 'cqu', 'BcaB01g04149' => 'bca', 'BcaB03g12940' => 'bca', 'BcaB03g13090' => 'bca', 'BcaB03g14466' => 'bca', 'BcaB05g24035' => 'bca', 'BcaC01g06050' => 'bca', 'BcaC04g19148' => 'bca', 'BcaC04g20761' => 'bca', 'BcaC06g32845' => 'bca', 'BcaC07g41274' => 'bca', 'BcaC09g50827' => 'bca', 'BcaNung00741' => 'bca', 'BcaNung00742' => 'bca', 'BcaNung01859' => 'bca', 'BcaNung03985' => 'bca', 'BcaNung03989' => 'bca', 'BcaNung05661' => 'bca', 'BolC1t00257H' => 'bol', 'BolC1t01956H' => 'bol', 'BolC2t06534H' => 'bol', 'BolC3t14334H' => 'bol', 'BolC5t30451H' => 'bol', 'BolC7t45880H' => 'bol', 'BolC7t46586H' => 'bol', 'BolC8t49301H' => 'bol', 'BolC8t51837H' => 'bol', 'BolC9t56822H' => 'bol', 'BolC9t59235H' => 'bol', 'BraA01t00234Z' => 'bra', 'BraA01t01563Z' => 'bra', 'BraA02t05147Z' => 'bra', 'BraA03t10947Z' => 'bra', 'BraA03t14633Z' => 'bra', 'BraA08t35112Z' => 'bra', 'BraA09t41330Z' => 'bra', 'BraA10t44570Z' => 'bra', 'C01p02670' => 'bna', 'C01p20260' => 'bna', 'C02p05890' => 'bna', 'C03p19530' => 'bna', 'C05p17470' => 'bna', 'C07p53900' => 'bna', 'C07p61630' => 'bna', 'C08p16800' => 'bna', 'C08p42810' => 'bna', 'C09p39480' => 'bna', 'C09p63980' => 'bna', 'CAN.G1001.7' => 'can', 'CAN.G1034.55' => 'can', 'CAN.G143.7' => 'can', 'CAN.G3340.1' => 'can', 'CAN.G358.19' => 'can', 'CAN.G373.2' => 'can', 'CAN.G674.16' => 'can', 'CAN.G674.17' => 'can', 'CAN.G674.18' => 'can', 'CAN.G732.2' => 'can', 'CAN.G732.3' => 'can', 'CAN.G993.39' => 'can', 'CANSAT01G2052' => 'cansat', 'CANSAT80G0070' => 'cansat', 'CANSAT80G0483' => 'cansat', 'CANSAT80G0625' => 'cansat', 'CARHR019690' => 'chi', 'CARHR080280' => 'chi', 'CARHR152750' => 'chi', 'CARHR152760' => 'chi', 'CARHR152770' => 'chi', 'CARHR200340' => 'chi', 'CARHR232370' => 'chi', 'CARHR244670' => 'chi', 'CARHR244680' => 'chi', 'CARHR257520' => 'chi', 'Carub.0001s1872' => 'cru', 'Carub.0006s1130' => 'cru', 'Carub.0007s0396' => 'cru', 'Carub.0007s0397' => 'cru', 'Carub.0007s1608' => 'cru', 'Carub.0008s1068' => 'cru', 'Carub.0008s1077' => 'cru', 'Ca_16158_v3' => 'car', 'Ca_17571_v3' => 'car', 'Ca_21936_v3' => 'car', 'Ca_22350_v3' => 'car', 'CBR_g22445' => 'cbr', 'CBR_g26290' => 'cbr', 'Cc04_g09610' => 'ccan', 'Cc04_g12280' => 'ccan', 'Cc07_g10230' => 'ccan', 'CDE02G0093' => 'cde', 'CDE02G0701' => 'cde', 'CDE04G1050' => 'cde', 'CDE05G1833' => 'cde', 'CDE05G3058' => 'cde', 'CDE05G3380' => 'cde', 'CDE06G0536' => 'cde', 'Cfa006923' => 'cfa', 'Cfa009402' => 'cfa', 'Cfa018751' => 'cfa', 'Cfa019164' => 'cfa', 'Cfa022935' => 'cfa', 'Ciclev10019081m.g' => 'ccl', 'Ciclev10025076m.g' => 'ccl', 'Ciclev10030712m.g' => 'ccl', 'Ciclev10033760m.g' => 'ccl', 'CiPaw.05G105600' => 'cil', 'CiPaw.08G136700' => 'cil', 'CiPaw.11G003900' => 'cil', 'CiPaw.11G023700' => 'cil', 'CiPaw.12G003700' => 'cil', 'ClCG06G017100' => 'cla', 'ClCG06G018110' => 'cla', 'ClCG07G008800' => 'cla', 'ClCG07G015330' => 'cla', 'COL.COLO4_13698' => 'col', 'COL.COLO4_16659' => 'col', 'COL.COLO4_21986' => 'col', 'COL.COLO4_24049' => 'col', 'COL.COLO4_29061' => 'col', 'COL.COLO4_29075' => 'col', 'COL.COLO4_30094' => 'col', 'Cpa.g.c33689' => 'cpa', 'Cpa.g.sc108.39' => 'cpa', 'Cpa.g.sc108.41' => 'cpa', 'Cpa.g.sc1163.1' => 'cpa', 'Cpa.g.sc4.155' => 'cpa', 'Cpa.g.sc6.194' => 'cpa', 'CsaV3_1G000340' => 'csa', 'CsaV3_1G001400' => 'csa', 'CsaV3_4G002220' => 'csa', 'CsaV3_4G005370' => 'csa', 'CSS0007487' => 'camsi', 'CSS0008066' => 'camsi', 'CSS0009120' => 'camsi', 'CSS0015512' => 'camsi', 'CSS0022409' => 'camsi', 'CSS0025358' => 'camsi', 'CSS0044547' => 'camsi', 'DCAR_013057' => 'dca', 'DCAR_015058' => 'dca', 'DCAR_016027' => 'dca', 'DCAR_017327' => 'dca', 'DCAR_020743' => 'dca', 'DCAR_026157' => 'dca', 'DCAR_032339' => 'dca', 'DCAR_032340' => 'dca', 'Dinv11200' => 'din', 'Dinv11201' => 'din', 'Dinv20631' => 'din', 'Dinv23182' => 'din', 'Dinv33466' => 'din', 'Dinv33583' => 'din', 'Dinv38565' => 'din', 'Duzib068G0200' => 'dzi', 'Duzib147G0132' => 'dzi', 'Duzib147G0635' => 'dzi', 'Duzib205G1670' => 'dzi', 'Duzib251G0606' => 'dzi', 'ECA232G3336' => 'eca', 'ECA232G3763' => 'eca', 'ECA232G4845' => 'eca', 'ECA234G1607' => 'eca', 'ECA246G0932' => 'eca', 'ECA247G0781' => 'eca', 'ECA247G1932' => 'eca', 'ECA247G2079' => 'eca', 'ECA247G3338' => 'eca', 'ECA247G4115' => 'eca', 'EL10Ac3g06552' => 'bvu', 'EL10Ac5g10721' => 'bvu', 'EL10Ac5g10722' => 'bvu', 'EL10Ac5g10723' => 'bvu', 'EL10Ac5g11361' => 'bvu', 'EL10Ac6g13553' => 'bvu', 'EL10As8g23872' => 'bvu', 'Eucgr.B00250' => 'egr', 'Eucgr.B00251' => 'egr', 'Eucgr.B03533' => 'egr', 'Eucgr.I02381' => 'egr', 'Eucgr.K02700' => 'egr', 'FAN02G0174' => 'fan', 'FAN02G3146' => 'fan', 'FAN04G1672' => 'fan', 'FAN04G2273' => 'fan', 'FAN05G2791' => 'fan', 'FAN05G4035' => 'fan', 'FAN07G0834' => 'fan', 'FAN08G1198' => 'fan', 'FAN09G4182' => 'fan', 'FAN12G0496' => 'fan', 'FAN13G1027' => 'fan', 'FAN13G2951' => 'fan', 'FAN14G0705' => 'fan', 'FAN14G0720' => 'fan', 'FAN17G0201' => 'fan', 'FAN17G2665' => 'fan', 'FAN18G1456' => 'fan', 'FAN18G1525' => 'fan', 'FAN18G3500' => 'fan', 'FAN28G2670' => 'fan', 'FvH4_1g12391' => 'fve', 'FvH4_4g23220' => 'fve', 'FvH4_5g08810' => 'fve', 'FvH4_5g28960' => 'fve', 'FvH4_6g42820' => 'fve', 'FvH4_6g51110' => 'fve', 'Glyma.02G051802' => 'gma', 'Glyma.04G185300' => 'gma', 'Glyma.05G202900' => 'gma', 'Glyma.08G010300' => 'gma', 'Glyma.16G131900' => 'gma', 'Glyma.17G087900' => 'gma', 'Gohir.A07G048600' => 'ghi', 'Gohir.A11G179000' => 'ghi', 'Gohir.A12G140900' => 'ghi', 'Gohir.A12G140950' => 'ghi', 'Gohir.A12G191700' => 'ghi', 'Gohir.A13G086300' => 'ghi', 'Gohir.D07G052900' => 'ghi', 'Gohir.D11G186600' => 'ghi', 'Gohir.D12G145575' => 'ghi', 'Gohir.D12G145650' => 'ghi', 'Gohir.D12G145725' => 'ghi', 'Gohir.D12G194050' => 'ghi', 'Gohir.D13G091800' => 'ghi', 'Gorai.001G055900' => 'gra', 'Gorai.007G198400' => 'gra', 'Gorai.008G157000' => 'gra', 'Gorai.008G157100' => 'gra', 'Gorai.008G208700' => 'gra', 'Gorai.010G138700' => 'gra', 'GSVIVG01000977001' => 'vvi', 'GSVIVG01007708001' => 'vvi', 'GSVIVG01008587001' => 'vvi', 'GSVIVG01018849001' => 'vvi', 'GSVIVG01032432001' => 'vvi', 'HanXRQChr02g0034131' => 'han', 'HanXRQChr02g0035981' => 'han', 'HanXRQChr02g0035991' => 'han', 'HanXRQChr05g0155611' => 'han', 'HanXRQChr05g0155621' => 'han', 'HanXRQChr08g0236501' => 'han', 'HanXRQChr09g0261321' => 'han', 'HanXRQChr09g0272081' => 'han', 'HanXRQChr10g0310741' => 'han', 'HanXRQChr11g0325591' => 'han', 'HanXRQChr12g0385691' => 'han', 'HanXRQChr13g0387801' => 'han', 'HanXRQChr15g0463011' => 'han', 'Haze_03826' => 'cav', 'Haze_03827' => 'cav', 'Haze_07183' => 'cav', 'Haze_07537' => 'cav', 'Haze_07539' => 'cav', 'Haze_12461' => 'cav', 'Haze_16115' => 'cav', 'Haze_16808' => 'cav', 'Haze_18531' => 'cav', 'Hma1.2p1_0046F.1_g026700' => 'hma', 'Hma1.2p1_0046F.1_g026710' => 'hma', 'Hma1.2p1_0168F.1_g074340' => 'hma', 'Hma1.2p1_0266F.1_g107030' => 'hma', 'Hma1.2p1_0266F.1_g107060' => 'hma', 'Hma1.2p1_0275F.1_g110510' => 'hma', 'Hma1.2p1_0592F.1_g185490' => 'hma', 'Hma1.2p1_0592F.1_g185500' => 'hma', 'Hma1.2p1_0592F.1_g185510' => 'hma', 'Hma1.2p1_0592F.1_g185520' => 'hma', 'Hma1.2p1_0592F.1_g185530' => 'hma', 'Hma1.2p1_0818F.1_g223450' => 'hma', 'HPP92_009708' => 'vpl', 'HPP92_009793' => 'vpl', 'HPP92_009796' => 'vpl', 'HPP92_009797' => 'vpl', 'HPP92_014940' => 'vpl', 'HPP92_014988' => 'vpl', 'Hund02463' => 'sun', 'Hund02760' => 'sun', 'Hund05071' => 'sun', 'Hund10108' => 'sun', 'Hund11204' => 'sun', 'Hund14016' => 'sun', 'Hund16464' => 'sun', 'Lalb_Chr09g0333391' => 'lal', 'Lalb_Chr11g0070461' => 'lal', 'Lalb_Chr12g0201671' => 'lal', 'Lalb_Chr13g0297161' => 'lal', 'Lj1g0002823' => 'lja', 'Lj3C1074T6' => 'lonja', 'Lj4A212T28' => 'lonja', 'Lj4g0005516' => 'lja', 'Lj4g0013705' => 'lja', 'Lj4g0027865' => 'lja', 'Lj5C92G16' => 'lonja', 'Lj5C92T12' => 'lonja', 'Lj7C596T3' => 'lonja', 'Lj9A446G59' => 'lonja', 'Lj9A482G21' => 'lonja', 'Lsat_1_v5_gn_1_28261' => 'lsa', 'Lsat_1_v5_gn_1_28281' => 'lsa', 'Lsat_1_v5_gn_1_32721' => 'lsa', 'Lsat_1_v5_gn_4_151760' => 'lsa', 'Lsat_1_v5_gn_4_2120' => 'lsa', 'Lsat_1_v5_gn_4_75761' => 'lsa', 'Lsat_1_v5_gn_5_10920' => 'lsa', 'Manes.02G099900' => 'mes', 'Manes.11G096200' => 'mes', 'Manes.12G007200' => 'mes', 'Manes.14G048300' => 'mes', 'Manes.17G114700' => 'mes', 'Mapoly0002s0070' => 'mpo', 'Mapoly0029s0099' => 'mpo', 'MBI07_g24742_MAGBIO' => 'mbi', 'MBI10_g27988_MAGBIO' => 'mbi', 'MBI11_g13057_MAGBIO' => 'mbi', 'MD02G1137200' => 'mdo', 'MD06G1137200' => 'mdo', 'MD07G1122300' => 'mdo', 'MD09G1078200' => 'mdo', 'MD13G1123700' => 'mdo', 'MD14G1151900' => 'mdo', 'MD17G1030900' => 'mdo', 'MD17G1068200' => 'mdo', 'MD17G1068600' => 'mdo', 'Medtr3g077540' => 'mtr', 'Medtr4g105530' => 'mtr', 'Medtr8g076580' => 'mtr', 'Medtr8g076590' => 'mtr', 'Medtr8g096410' => 'mtr', 'MELO3C016411.2' => 'cme', 'MELO3C017780.2' => 'cme', 'MELO3C022560.2' => 'cme', 'MELO3C026187.2' => 'cme', 'MELO3C026286.2' => 'cme', 'MELO3C032854.2' => 'cme', 'Migut.H02495' => 'egut', 'Migut.I00561' => 'egut', 'Migut.K01015' => 'egut', 'Migut.K01016' => 'egut', 'Migut.L00743' => 'egut', 'Migut.L00744' => 'egut', 'Migut.L00746' => 'egut', 'Migut.L00798' => 'egut', 'Migut.L00799' => 'egut', 'Migut.N02096' => 'egut', 'MSTRG.11259' => 'ama', 'MSTRG.23142' => 'ama', 'MSTRG.2499' => 'ama', 'Nitab4.5_0000003g0730' => 'nta', 'Nitab4.5_0000137g0020' => 'nta', 'Nitab4.5_0000721g0210' => 'nta', 'Nitab4.5_0000723g0050' => 'nta', 'Nitab4.5_0000913g0070' => 'nta', 'Nitab4.5_0001332g0040' => 'nta', 'Nitab4.5_0001771g0050' => 'nta', 'Nitab4.5_0001918g0050' => 'nta', 'Nitab4.5_0002686g0030' => 'nta', 'Nitab4.5_0003156g0020' => 'nta', 'Nitab4.5_0003383g0040' => 'nta', 'Nitab4.5_0003918g0010' => 'nta', 'Nitab4.5_0006760g0010' => 'nta', 'Nn1g05981' => 'nnu', 'Nn1g06288' => 'nnu', 'Nn3g16371' => 'nnu', 'Nn3g16786' => 'nnu', 'Nn4g22232' => 'nnu', 'Oeu005144.1' => 'oeu', 'Oeu005145.1' => 'oeu', 'Oeu011348.1' => 'oeu', 'Oeu016415.1' => 'oeu', 'Oeu023501.1' => 'oeu', 'Oeu044473.1' => 'oeu', 'Oeu048892.2' => 'oeu', 'Os01g0549200' => 'osa', 'Os02g0469300' => 'osa', 'Os04g0311100' => 'osa', 'Os06g0474900' => 'osa', 'Os10g0181700' => 'osa', 'Os11g0454800' => 'osa', 'Peaxi162Scf00037g00714' => 'pax', 'Peaxi162Scf00084g01217' => 'pax', 'Peaxi162Scf00257g00217' => 'pax', 'Peaxi162Scf00516g00215' => 'pax', 'Peaxi162Scf00689g00123' => 'pax', 'PGR044G2719' => 'pgr', 'PGR083G1360' => 'pgr', 'PGR102G2849' => 'pgr', 'PGR119G2534' => 'pgr', 'PGSC0003DMG400003538' => 'stu', 'PGSC0003DMG400028138' => 'stu', 'PGSC0003DMG400031732' => 'stu', 'PGSC0003DMG400038165' => 'stu', 'Phvul.002G284600' => 'pvu', 'Phvul.003G258200' => 'pvu', 'Phvul.009G176500' => 'pvu', 'Potri.003G167201' => 'ptr', 'Potri.005G118400' => 'ptr', 'Potri.012G089000' => 'ptr', 'Potri.012G102800' => 'ptr', 'Potri.015G079400' => 'ptr', 'Potri.015G100900' => 'ptr', 'Pp3c14_9810' => 'ppa', 'Pp3c15_10450' => 'ppa', 'Pp3c20_19150' => 'ppa', 'Pp3c23_12740' => 'ppa', 'Pp3c23_6310' => 'ppa', 'Pp3c24_3720' => 'ppa', 'Pp3c27_2580' => 'ppa', 'Pp3c9_8990' => 'ppa', 'PRCOL_00002854' => 'pco', 'Prupe.1G221200' => 'ppe', 'Prupe.3G289000' => 'ppe', 'Prupe.5G147000' => 'ppe', 'Prupe.6G157300' => 'ppe', 'Prupe.7G163400' => 'ppe', 'Psat0s2177g0040' => 'psa', 'Psat3g174760' => 'psa', 'Psat3g192160' => 'psa', 'Psat4g058520' => 'psa', 'Psat4g096840' => 'psa', 'Psat7g037320' => 'psa', 'PSO017G1274' => 'pso', 'PSO017G5166' => 'pso', 'PSO063G4558' => 'pso', 'PSO170G4458' => 'pso', 'PSO170G5005' => 'pso', 'PSO210G6156' => 'pso', 'PSO210G6635' => 'pso', 'PSO210G7397' => 'pso', 'PSO210G7700' => 'pso', 'PSO455G0035' => 'pso', 'PSO455G0180' => 'pso', 'PSO478G4515' => 'pso', 'PSO832G1305' => 'pso', 'PSO832G3489' => 'pso', 'QL02p075247' => 'qlo', 'QL03p051148' => 'qlo', 'QL05p010313' => 'qlo', 'QL06p034627' => 'qlo', 'QL10p001889' => 'qlo', 'QL10p010846' => 'qlo', 'RcHm_v2.0_Chr1g0350621' => 'rch', 'RcHm_v2.0_Chr1g0350641' => 'rch', 'RcHm_v2.0_Chr2g0092891' => 'rch', 'RcHm_v2.0_Chr2g0100251' => 'rch', 'RcHm_v2.0_Chr2g0158661' => 'rch', 'RcHm_v2.0_Chr2g0172741' => 'rch', 'RcHm_v2.0_Chr4g0429571' => 'rch', 'RcHm_v2.0_Chr5g0042471' => 'rch', 'RcHm_v2.0_Chr7g0189451' => 'rch', 'Rhsim08G0052000' => 'rsi', 'Rhsim08G0174400' => 'rsi', 'Rhsim08G0193200' => 'rsi', 'Rhsim10G0214800' => 'rsi', 'Rhsim10G0214900' => 'rsi', 'Rhsim10G0215000' => 'rsi', 'Rhsim12G0022900' => 'rsi', 'Rhsim12G0177500' => 'rsi', 'Rhsim12G0177700' => 'rsi', 'Sabra03G0122600' => 'sbr', 'Sabra05G0097400' => 'sbr', 'Sabra12G0064100' => 'sbr', 'Sabra15G0121300' => 'sbr', 'SalBow2G0642' => 'sbo', 'SalBow5G2667' => 'sbo', 'SalBow5G4873' => 'sbo', 'SalBow8G2395' => 'sbo', 'Sc03g0003290' => 'sci', 'Sc10g0010130' => 'sci', 'Sc22g0003650' => 'sci', 'Sed0001603' => 'sed', 'Sed0004259' => 'sed', 'Sed0006789' => 'sed', 'Sed0011838' => 'sed', 'Sed0012964' => 'sed', 'Sed0016383' => 'sed', 'Sed0019010' => 'sed', 'Sed0020188' => 'sed', 'SEGI_04702' => 'sgi', 'SEGI_17231' => 'sgi', 'SEGI_18877' => 'sgi', 'SEGI_25196' => 'sgi', 'SEGI_25515' => 'sgi', 'SEGI_28445' => 'sgi', 'SEGI_37452' => 'sgi', 'SGA_v2.0_scaffold188G40336' => 'sas', 'SGA_v2.0_scaffold228G43247' => 'sas', 'SGA_v2.0_scaffold280G46853' => 'sas', 'SGA_v2.0_scaffold34G13808' => 'sas', 'SGA_v2.0_scaffold40G15576' => 'sas', 'SGA_v2.0_scaffold611G53188' => 'sas', 'SGA_v2.0_scaffold78G25461' => 'sas', 'SGA_v2.0_scaffold90G27888' => 'sas', 'SHI08601' => 'shi', 'SHI08606' => 'shi', 'SHI17117' => 'shi', 'SHI17119' => 'shi', 'SMO118G0201' => 'smo', 'SMO169G0247' => 'smo', 'SMO176G0006' => 'smo', 'SMO176G0015' => 'smo', 'SMO202G0006' => 'smo', 'SMO240G0050' => 'smo', 'SMO286G0009' => 'smo', 'SMO338G0033' => 'smo', 'SMO356G0533' => 'smo', 'SMO364G0382' => 'smo', 'SMO367G0166' => 'smo', 'SMO367G1098' => 'smo', 'Solyc01g009920.3' => 'sly', 'Solyc01g099300.3' => 'sly', 'Solyc02g084700.3' => 'sly', 'Solyc03g097520.3' => 'sly', 'Solyc06g071580.3' => 'sly', 'Solyc10g081760.3' => 'sly', 'Sopen01g005480' => 'spe', 'Sopen01g042850' => 'spe', 'Sopen02g029370' => 'spe', 'Sopen03g028280' => 'spe', 'Sopen06g027870' => 'spe', 'Sopen10g032270' => 'spe', 'Sp5g18180' => 'spa', 'Sp6g12880' => 'spa', 'Sp6g30850' => 'spa', 'Sp7g22960' => 'spa', 'Sp7g34010' => 'spa', 'SpUn1326_0010' => 'spa', 'TAR371G0242' => 'tar', 'TAR622G0638' => 'tar', 'TAR628G1548' => 'tar', 'TAR629G1079' => 'tar', 'TAR629G3413' => 'tar', 'THA.LOC104804249' => 'tha', 'THA.LOC104808315' => 'tha', 'THA.LOC104809238' => 'tha', 'THA.LOC104825484' => 'tha', 'Thecc.01G025500' => 'tca', 'Thecc.03G015800' => 'tca', 'Thecc.03G018000' => 'tca', 'Thecc.03G134800' => 'tca', 'Thecc.04G014700' => 'tca', 'Thhalv10006991m.g' => 'esa', 'Thhalv10012707m.g' => 'esa', 'Thhalv10015739m.g' => 'esa', 'Thhalv10024553m.g' => 'esa', 'Thhalv10024673m.g' => 'esa', 'Thhalv10029187m.g' => 'esa', 'TPR.G12971' => 'tpr', 'TPR.G29396' => 'tpr', 'TPR.G33376' => 'tpr', 'TPR.G35508' => 'tpr', 'TPR.G35516' => 'tpr', 'TPR.G37317' => 'tpr', 'TPR.G37389' => 'tpr', 'TPR.G37523' => 'tpr', 'TPR.G559' => 'tpr', 'TWI14G0070' => 'twi', 'TWI14G0729' => 'twi', 'TWI18G0596' => 'twi', 'TWI39G0780' => 'twi', 'TWI39G0850' => 'twi', 'TWI73G1052' => 'twi', 'unitig_52.g17485' => 'ugi', 'unitig_61.g26355' => 'ugi', 'vmacro01040' => 'vma', 'vmacro16731' => 'vma', 'vmacro18270' => 'vma', 'vmacro19142' => 'vma', 'vmacro19407' => 'vma', 'vmacro19408' => 'vma', 'vmacro21899' => 'vma', 'vmacro21900' => 'vma', 'vmacro21901' => 'vma', 'VMungo0251G0490' => 'vmu', 'VMungo0251G1748' => 'vmu', 'VMungo1309G0421' => 'vmu', 'Zm00001eb086500' => 'zma', 'Zm00001eb150680' => 'zma', 'Zm00001eb162330' => 'zma', 'Zm00001eb203130' => 'zma', 'Zm00001eb369480' => 'zma', 'Zm00001eb382340' => 'zma', 'Zm00001eb416360' => 'zma' ) $gf_id = 'HOM05D000902' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000902' ) $data_identifier = 'HOM05D000902' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 13, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 10, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 6, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 9, 'hma' => (int) 12, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 4, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 6, 'ppa' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 6, 'rch' => (int) 9, 'rsi' => (int) 9, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 12, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 3, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416360' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000902', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '663', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02470' => 'bna', 'A01p16260' => 'bna', 'A02p01680' => 'bna', 'A03p16600' => 'bna', 'A03p55660' => 'bna', 'A03p64160' => 'bna', 'A03p64170' => 'bna', 'A08p31900' => 'bna', 'A09p59530' => 'bna', 'A10p08230' => 'bna', 'A10p25090' => 'bna', 'Aa31LG3G7100' => 'aar', 'Aa31LG3G7110' => 'aar', 'Aa31LG6G13160' => 'aar', 'Aa31LG7G10770' => 'aar', 'Aa31LG7G3830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2723' => 'aag', 'Actinidia08045' => 'ach', 'Actinidia08888' => 'ach', 'Actinidia18333' => 'ach', 'Actinidia19334' => 'ach', 'Actinidia25552' => 'ach', 'Actinidia26089' => 'ach', 'Actinidia30615' => 'ach', 'Actinidia30616' => 'ach', 'Actinidia33083' => 'ach', 'Actinidia35762' => 'ach', 'Ah.02g110620' => 'amhyb', 'Ah.11g046390' => 'amhyb', 'AL1G31670' => 'aly', 'AL6G23730' => 'aly', 'AL7G14740' => 'aly', 'AL7G14750' => 'aly', 'AL7G14760' => 'aly', 'AL7G28220' => 'aly', 'AL8G24940' => 'aly', 'Aqoxy3G01665' => 'aox', 'Aqoxy3G02853' => 'aox', 'Aqoxy5G01513' => 'aox', 'Aqoxy5G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8SKA4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ75LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKDA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0LJZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7REX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZP4YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWX7I5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2QKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS0L9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPCD8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q161UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC7XCF' => 'arhy', 'AT1G19100' => 'ath', 'AT4G24970' => 'ath', 'AT4G36270' => 'ath', 'AT4G36280' => 'ath', 'AT4G36290' => 'ath', 'AT5G13130' => 'ath', 'AT5G50780' => 'ath', 'ATR0582G266' => 'atr', 'ATR0661G195' => 'atr', 'ATR1152G031' => 'atr', 'Atru.chr11.2382' => 'acertr', 'Atru.chr12.2337' => 'acertr', 'Atru.chr3.744' => 'acertr', 'Atru.chr6.1870' => 'acertr', 'Atru.chr9.2515' => 'acertr', 'AUR62004120' => 'cqu', 'AUR62005667' => 'cqu', 'AUR62007634' => 'cqu', 'AUR62008186' => 'cqu', 'AUR62008187' => 'cqu', 'AUR62008188' => 'cqu', 'AUR62027954' => 'cqu', 'AUR62028766' => 'cqu', 'AUR62028767' => 'cqu', 'AUR62028768' => 'cqu', 'AUR62028886' => 'cqu', 'AUR62029563' => 'cqu', 'AUR62038832' => 'cqu', 'BcaB01g04149' => 'bca', 'BcaB03g12940' => 'bca', 'BcaB03g13090' => 'bca', 'BcaB03g14466' => 'bca', 'BcaB05g24035' => 'bca', 'BcaC01g06050' => 'bca', 'BcaC04g19148' => 'bca', 'BcaC04g20761' => 'bca', 'BcaC06g32845' => 'bca', 'BcaC07g41274' => 'bca', 'BcaC09g50827' => 'bca', 'BcaNung00741' => 'bca', 'BcaNung00742' => 'bca', 'BcaNung01859' => 'bca', 'BcaNung03985' => 'bca', 'BcaNung03989' => 'bca', 'BcaNung05661' => 'bca', 'BolC1t00257H' => 'bol', 'BolC1t01956H' => 'bol', 'BolC2t06534H' => 'bol', 'BolC3t14334H' => 'bol', 'BolC5t30451H' => 'bol', 'BolC7t45880H' => 'bol', 'BolC7t46586H' => 'bol', 'BolC8t49301H' => 'bol', 'BolC8t51837H' => 'bol', 'BolC9t56822H' => 'bol', 'BolC9t59235H' => 'bol', 'BraA01t00234Z' => 'bra', 'BraA01t01563Z' => 'bra', 'BraA02t05147Z' => 'bra', 'BraA03t10947Z' => 'bra', 'BraA03t14633Z' => 'bra', 'BraA08t35112Z' => 'bra', 'BraA09t41330Z' => 'bra', 'BraA10t44570Z' => 'bra', 'C01p02670' => 'bna', 'C01p20260' => 'bna', 'C02p05890' => 'bna', 'C03p19530' => 'bna', 'C05p17470' => 'bna', 'C07p53900' => 'bna', 'C07p61630' => 'bna', 'C08p16800' => 'bna', 'C08p42810' => 'bna', 'C09p39480' => 'bna', 'C09p63980' => 'bna', 'CAN.G1001.7' => 'can', 'CAN.G1034.55' => 'can', 'CAN.G143.7' => 'can', 'CAN.G3340.1' => 'can', 'CAN.G358.19' => 'can', 'CAN.G373.2' => 'can', 'CAN.G674.16' => 'can', 'CAN.G674.17' => 'can', 'CAN.G674.18' => 'can', 'CAN.G732.2' => 'can', 'CAN.G732.3' => 'can', 'CAN.G993.39' => 'can', 'CANSAT01G2052' => 'cansat', 'CANSAT80G0070' => 'cansat', 'CANSAT80G0483' => 'cansat', 'CANSAT80G0625' => 'cansat', 'CARHR019690' => 'chi', 'CARHR080280' => 'chi', 'CARHR152750' => 'chi', 'CARHR152760' => 'chi', 'CARHR152770' => 'chi', 'CARHR200340' => 'chi', 'CARHR232370' => 'chi', 'CARHR244670' => 'chi', 'CARHR244680' => 'chi', 'CARHR257520' => 'chi', 'Carub.0001s1872' => 'cru', 'Carub.0006s1130' => 'cru', 'Carub.0007s0396' => 'cru', 'Carub.0007s0397' => 'cru', 'Carub.0007s1608' => 'cru', 'Carub.0008s1068' => 'cru', 'Carub.0008s1077' => 'cru', 'Ca_16158_v3' => 'car', 'Ca_17571_v3' => 'car', 'Ca_21936_v3' => 'car', 'Ca_22350_v3' => 'car', 'CBR_g22445' => 'cbr', 'CBR_g26290' => 'cbr', 'Cc04_g09610' => 'ccan', 'Cc04_g12280' => 'ccan', 'Cc07_g10230' => 'ccan', 'CDE02G0093' => 'cde', 'CDE02G0701' => 'cde', 'CDE04G1050' => 'cde', 'CDE05G1833' => 'cde', 'CDE05G3058' => 'cde', 'CDE05G3380' => 'cde', 'CDE06G0536' => 'cde', 'Cfa006923' => 'cfa', 'Cfa009402' => 'cfa', 'Cfa018751' => 'cfa', 'Cfa019164' => 'cfa', 'Cfa022935' => 'cfa', 'Ciclev10019081m.g' => 'ccl', 'Ciclev10025076m.g' => 'ccl', 'Ciclev10030712m.g' => 'ccl', 'Ciclev10033760m.g' => 'ccl', 'CiPaw.05G105600' => 'cil', 'CiPaw.08G136700' => 'cil', 'CiPaw.11G003900' => 'cil', 'CiPaw.11G023700' => 'cil', 'CiPaw.12G003700' => 'cil', 'ClCG06G017100' => 'cla', 'ClCG06G018110' => 'cla', 'ClCG07G008800' => 'cla', 'ClCG07G015330' => 'cla', 'COL.COLO4_13698' => 'col', 'COL.COLO4_16659' => 'col', 'COL.COLO4_21986' => 'col', 'COL.COLO4_24049' => 'col', 'COL.COLO4_29061' => 'col', 'COL.COLO4_29075' => 'col', 'COL.COLO4_30094' => 'col', 'Cpa.g.c33689' => 'cpa', 'Cpa.g.sc108.39' => 'cpa', 'Cpa.g.sc108.41' => 'cpa', 'Cpa.g.sc1163.1' => 'cpa', 'Cpa.g.sc4.155' => 'cpa', 'Cpa.g.sc6.194' => 'cpa', 'CsaV3_1G000340' => 'csa', 'CsaV3_1G001400' => 'csa', 'CsaV3_4G002220' => 'csa', 'CsaV3_4G005370' => 'csa', 'CSS0007487' => 'camsi', 'CSS0008066' => 'camsi', 'CSS0009120' => 'camsi', 'CSS0015512' => 'camsi', 'CSS0022409' => 'camsi', 'CSS0025358' => 'camsi', 'CSS0044547' => 'camsi', 'DCAR_013057' => 'dca', 'DCAR_015058' => 'dca', 'DCAR_016027' => 'dca', 'DCAR_017327' => 'dca', 'DCAR_020743' => 'dca', 'DCAR_026157' => 'dca', 'DCAR_032339' => 'dca', 'DCAR_032340' => 'dca', 'Dinv11200' => 'din', 'Dinv11201' => 'din', 'Dinv20631' => 'din', 'Dinv23182' => 'din', 'Dinv33466' => 'din', 'Dinv33583' => 'din', 'Dinv38565' => 'din', 'Duzib068G0200' => 'dzi', 'Duzib147G0132' => 'dzi', 'Duzib147G0635' => 'dzi', 'Duzib205G1670' => 'dzi', 'Duzib251G0606' => 'dzi', 'ECA232G3336' => 'eca', 'ECA232G3763' => 'eca', 'ECA232G4845' => 'eca', 'ECA234G1607' => 'eca', 'ECA246G0932' => 'eca', 'ECA247G0781' => 'eca', 'ECA247G1932' => 'eca', 'ECA247G2079' => 'eca', 'ECA247G3338' => 'eca', 'ECA247G4115' => 'eca', 'EL10Ac3g06552' => 'bvu', 'EL10Ac5g10721' => 'bvu', 'EL10Ac5g10722' => 'bvu', 'EL10Ac5g10723' => 'bvu', 'EL10Ac5g11361' => 'bvu', 'EL10Ac6g13553' => 'bvu', 'EL10As8g23872' => 'bvu', 'Eucgr.B00250' => 'egr', 'Eucgr.B00251' => 'egr', 'Eucgr.B03533' => 'egr', 'Eucgr.I02381' => 'egr', 'Eucgr.K02700' => 'egr', 'FAN02G0174' => 'fan', 'FAN02G3146' => 'fan', 'FAN04G1672' => 'fan', 'FAN04G2273' => 'fan', 'FAN05G2791' => 'fan', 'FAN05G4035' => 'fan', 'FAN07G0834' => 'fan', 'FAN08G1198' => 'fan', 'FAN09G4182' => 'fan', 'FAN12G0496' => 'fan', 'FAN13G1027' => 'fan', 'FAN13G2951' => 'fan', 'FAN14G0705' => 'fan', 'FAN14G0720' => 'fan', 'FAN17G0201' => 'fan', 'FAN17G2665' => 'fan', 'FAN18G1456' => 'fan', 'FAN18G1525' => 'fan', 'FAN18G3500' => 'fan', 'FAN28G2670' => 'fan', 'FvH4_1g12391' => 'fve', 'FvH4_4g23220' => 'fve', 'FvH4_5g08810' => 'fve', 'FvH4_5g28960' => 'fve', 'FvH4_6g42820' => 'fve', 'FvH4_6g51110' => 'fve', 'Glyma.02G051802' => 'gma', 'Glyma.04G185300' => 'gma', 'Glyma.05G202900' => 'gma', 'Glyma.08G010300' => 'gma', 'Glyma.16G131900' => 'gma', 'Glyma.17G087900' => 'gma', 'Gohir.A07G048600' => 'ghi', 'Gohir.A11G179000' => 'ghi', 'Gohir.A12G140900' => 'ghi', 'Gohir.A12G140950' => 'ghi', 'Gohir.A12G191700' => 'ghi', 'Gohir.A13G086300' => 'ghi', 'Gohir.D07G052900' => 'ghi', 'Gohir.D11G186600' => 'ghi', 'Gohir.D12G145575' => 'ghi', 'Gohir.D12G145650' => 'ghi', 'Gohir.D12G145725' => 'ghi', 'Gohir.D12G194050' => 'ghi', 'Gohir.D13G091800' => 'ghi', 'Gorai.001G055900' => 'gra', 'Gorai.007G198400' => 'gra', 'Gorai.008G157000' => 'gra', 'Gorai.008G157100' => 'gra', 'Gorai.008G208700' => 'gra', 'Gorai.010G138700' => 'gra', 'GSVIVG01000977001' => 'vvi', 'GSVIVG01007708001' => 'vvi', 'GSVIVG01008587001' => 'vvi', 'GSVIVG01018849001' => 'vvi', 'GSVIVG01032432001' => 'vvi', 'HanXRQChr02g0034131' => 'han', 'HanXRQChr02g0035981' => 'han', 'HanXRQChr02g0035991' => 'han', 'HanXRQChr05g0155611' => 'han', 'HanXRQChr05g0155621' => 'han', 'HanXRQChr08g0236501' => 'han', 'HanXRQChr09g0261321' => 'han', 'HanXRQChr09g0272081' => 'han', 'HanXRQChr10g0310741' => 'han', 'HanXRQChr11g0325591' => 'han', 'HanXRQChr12g0385691' => 'han', 'HanXRQChr13g0387801' => 'han', 'HanXRQChr15g0463011' => 'han', 'Haze_03826' => 'cav', 'Haze_03827' => 'cav', 'Haze_07183' => 'cav', 'Haze_07537' => 'cav', 'Haze_07539' => 'cav', 'Haze_12461' => 'cav', 'Haze_16115' => 'cav', 'Haze_16808' => 'cav', 'Haze_18531' => 'cav', 'Hma1.2p1_0046F.1_g026700' => 'hma', 'Hma1.2p1_0046F.1_g026710' => 'hma', 'Hma1.2p1_0168F.1_g074340' => 'hma', 'Hma1.2p1_0266F.1_g107030' => 'hma', 'Hma1.2p1_0266F.1_g107060' => 'hma', 'Hma1.2p1_0275F.1_g110510' => 'hma', 'Hma1.2p1_0592F.1_g185490' => 'hma', 'Hma1.2p1_0592F.1_g185500' => 'hma', 'Hma1.2p1_0592F.1_g185510' => 'hma', 'Hma1.2p1_0592F.1_g185520' => 'hma', 'Hma1.2p1_0592F.1_g185530' => 'hma', 'Hma1.2p1_0818F.1_g223450' => 'hma', 'HPP92_009708' => 'vpl', 'HPP92_009793' => 'vpl', 'HPP92_009796' => 'vpl', 'HPP92_009797' => 'vpl', 'HPP92_014940' => 'vpl', 'HPP92_014988' => 'vpl', 'Hund02463' => 'sun', 'Hund02760' => 'sun', 'Hund05071' => 'sun', 'Hund10108' => 'sun', 'Hund11204' => 'sun', 'Hund14016' => 'sun', 'Hund16464' => 'sun', 'Lalb_Chr09g0333391' => 'lal', 'Lalb_Chr11g0070461' => 'lal', 'Lalb_Chr12g0201671' => 'lal', 'Lalb_Chr13g0297161' => 'lal', 'Lj1g0002823' => 'lja', 'Lj3C1074T6' => 'lonja', 'Lj4A212T28' => 'lonja', 'Lj4g0005516' => 'lja', 'Lj4g0013705' => 'lja', 'Lj4g0027865' => 'lja', 'Lj5C92G16' => 'lonja', 'Lj5C92T12' => 'lonja', 'Lj7C596T3' => 'lonja', 'Lj9A446G59' => 'lonja', 'Lj9A482G21' => 'lonja', 'Lsat_1_v5_gn_1_28261' => 'lsa', 'Lsat_1_v5_gn_1_28281' => 'lsa', 'Lsat_1_v5_gn_1_32721' => 'lsa', 'Lsat_1_v5_gn_4_151760' => 'lsa', 'Lsat_1_v5_gn_4_2120' => 'lsa', 'Lsat_1_v5_gn_4_75761' => 'lsa', 'Lsat_1_v5_gn_5_10920' => 'lsa', 'Manes.02G099900' => 'mes', 'Manes.11G096200' => 'mes', 'Manes.12G007200' => 'mes', 'Manes.14G048300' => 'mes', 'Manes.17G114700' => 'mes', 'Mapoly0002s0070' => 'mpo', 'Mapoly0029s0099' => 'mpo', 'MBI07_g24742_MAGBIO' => 'mbi', 'MBI10_g27988_MAGBIO' => 'mbi', 'MBI11_g13057_MAGBIO' => 'mbi', 'MD02G1137200' => 'mdo', 'MD06G1137200' => 'mdo', 'MD07G1122300' => 'mdo', 'MD09G1078200' => 'mdo', 'MD13G1123700' => 'mdo', 'MD14G1151900' => 'mdo', 'MD17G1030900' => 'mdo', 'MD17G1068200' => 'mdo', 'MD17G1068600' => 'mdo', 'Medtr3g077540' => 'mtr', 'Medtr4g105530' => 'mtr', 'Medtr8g076580' => 'mtr', 'Medtr8g076590' => 'mtr', 'Medtr8g096410' => 'mtr', 'MELO3C016411.2' => 'cme', 'MELO3C017780.2' => 'cme', 'MELO3C022560.2' => 'cme', 'MELO3C026187.2' => 'cme', 'MELO3C026286.2' => 'cme', 'MELO3C032854.2' => 'cme', 'Migut.H02495' => 'egut', 'Migut.I00561' => 'egut', 'Migut.K01015' => 'egut', 'Migut.K01016' => 'egut', 'Migut.L00743' => 'egut', 'Migut.L00744' => 'egut', 'Migut.L00746' => 'egut', 'Migut.L00798' => 'egut', 'Migut.L00799' => 'egut', 'Migut.N02096' => 'egut', 'MSTRG.11259' => 'ama', 'MSTRG.23142' => 'ama', 'MSTRG.2499' => 'ama', 'Nitab4.5_0000003g0730' => 'nta', 'Nitab4.5_0000137g0020' => 'nta', 'Nitab4.5_0000721g0210' => 'nta', 'Nitab4.5_0000723g0050' => 'nta', 'Nitab4.5_0000913g0070' => 'nta', 'Nitab4.5_0001332g0040' => 'nta', 'Nitab4.5_0001771g0050' => 'nta', 'Nitab4.5_0001918g0050' => 'nta', 'Nitab4.5_0002686g0030' => 'nta', 'Nitab4.5_0003156g0020' => 'nta', 'Nitab4.5_0003383g0040' => 'nta', 'Nitab4.5_0003918g0010' => 'nta', 'Nitab4.5_0006760g0010' => 'nta', 'Nn1g05981' => 'nnu', 'Nn1g06288' => 'nnu', 'Nn3g16371' => 'nnu', 'Nn3g16786' => 'nnu', 'Nn4g22232' => 'nnu', 'Oeu005144.1' => 'oeu', 'Oeu005145.1' => 'oeu', 'Oeu011348.1' => 'oeu', 'Oeu016415.1' => 'oeu', 'Oeu023501.1' => 'oeu', 'Oeu044473.1' => 'oeu', 'Oeu048892.2' => 'oeu', 'Os01g0549200' => 'osa', 'Os02g0469300' => 'osa', 'Os04g0311100' => 'osa', 'Os06g0474900' => 'osa', 'Os10g0181700' => 'osa', 'Os11g0454800' => 'osa', 'Peaxi162Scf00037g00714' => 'pax', 'Peaxi162Scf00084g01217' => 'pax', 'Peaxi162Scf00257g00217' => 'pax', 'Peaxi162Scf00516g00215' => 'pax', 'Peaxi162Scf00689g00123' => 'pax', 'PGR044G2719' => 'pgr', 'PGR083G1360' => 'pgr', 'PGR102G2849' => 'pgr', 'PGR119G2534' => 'pgr', 'PGSC0003DMG400003538' => 'stu', 'PGSC0003DMG400028138' => 'stu', 'PGSC0003DMG400031732' => 'stu', 'PGSC0003DMG400038165' => 'stu', 'Phvul.002G284600' => 'pvu', 'Phvul.003G258200' => 'pvu', 'Phvul.009G176500' => 'pvu', 'Potri.003G167201' => 'ptr', 'Potri.005G118400' => 'ptr', 'Potri.012G089000' => 'ptr', 'Potri.012G102800' => 'ptr', 'Potri.015G079400' => 'ptr', 'Potri.015G100900' => 'ptr', 'Pp3c14_9810' => 'ppa', 'Pp3c15_10450' => 'ppa', 'Pp3c20_19150' => 'ppa', 'Pp3c23_12740' => 'ppa', 'Pp3c23_6310' => 'ppa', 'Pp3c24_3720' => 'ppa', 'Pp3c27_2580' => 'ppa', 'Pp3c9_8990' => 'ppa', 'PRCOL_00002854' => 'pco', 'Prupe.1G221200' => 'ppe', 'Prupe.3G289000' => 'ppe', 'Prupe.5G147000' => 'ppe', 'Prupe.6G157300' => 'ppe', 'Prupe.7G163400' => 'ppe', 'Psat0s2177g0040' => 'psa', 'Psat3g174760' => 'psa', 'Psat3g192160' => 'psa', 'Psat4g058520' => 'psa', 'Psat4g096840' => 'psa', 'Psat7g037320' => 'psa', 'PSO017G1274' => 'pso', 'PSO017G5166' => 'pso', 'PSO063G4558' => 'pso', 'PSO170G4458' => 'pso', 'PSO170G5005' => 'pso', 'PSO210G6156' => 'pso', 'PSO210G6635' => 'pso', 'PSO210G7397' => 'pso', 'PSO210G7700' => 'pso', 'PSO455G0035' => 'pso', 'PSO455G0180' => 'pso', 'PSO478G4515' => 'pso', 'PSO832G1305' => 'pso', 'PSO832G3489' => 'pso', 'QL02p075247' => 'qlo', 'QL03p051148' => 'qlo', 'QL05p010313' => 'qlo', 'QL06p034627' => 'qlo', 'QL10p001889' => 'qlo', 'QL10p010846' => 'qlo', 'RcHm_v2.0_Chr1g0350621' => 'rch', 'RcHm_v2.0_Chr1g0350641' => 'rch', 'RcHm_v2.0_Chr2g0092891' => 'rch', 'RcHm_v2.0_Chr2g0100251' => 'rch', 'RcHm_v2.0_Chr2g0158661' => 'rch', 'RcHm_v2.0_Chr2g0172741' => 'rch', 'RcHm_v2.0_Chr4g0429571' => 'rch', 'RcHm_v2.0_Chr5g0042471' => 'rch', 'RcHm_v2.0_Chr7g0189451' => 'rch', 'Rhsim08G0052000' => 'rsi', 'Rhsim08G0174400' => 'rsi', 'Rhsim08G0193200' => 'rsi', 'Rhsim10G0214800' => 'rsi', 'Rhsim10G0214900' => 'rsi', 'Rhsim10G0215000' => 'rsi', 'Rhsim12G0022900' => 'rsi', 'Rhsim12G0177500' => 'rsi', 'Rhsim12G0177700' => 'rsi', 'Sabra03G0122600' => 'sbr', 'Sabra05G0097400' => 'sbr', 'Sabra12G0064100' => 'sbr', 'Sabra15G0121300' => 'sbr', 'SalBow2G0642' => 'sbo', 'SalBow5G2667' => 'sbo', 'SalBow5G4873' => 'sbo', 'SalBow8G2395' => 'sbo', 'Sc03g0003290' => 'sci', 'Sc10g0010130' => 'sci', 'Sc22g0003650' => 'sci', 'Sed0001603' => 'sed', 'Sed0004259' => 'sed', 'Sed0006789' => 'sed', 'Sed0011838' => 'sed', 'Sed0012964' => 'sed', 'Sed0016383' => 'sed', 'Sed0019010' => 'sed', 'Sed0020188' => 'sed', 'SEGI_04702' => 'sgi', 'SEGI_17231' => 'sgi', 'SEGI_18877' => 'sgi', 'SEGI_25196' => 'sgi', 'SEGI_25515' => 'sgi', 'SEGI_28445' => 'sgi', 'SEGI_37452' => 'sgi', 'SGA_v2.0_scaffold188G40336' => 'sas', 'SGA_v2.0_scaffold228G43247' => 'sas', 'SGA_v2.0_scaffold280G46853' => 'sas', 'SGA_v2.0_scaffold34G13808' => 'sas', 'SGA_v2.0_scaffold40G15576' => 'sas', 'SGA_v2.0_scaffold611G53188' => 'sas', 'SGA_v2.0_scaffold78G25461' => 'sas', 'SGA_v2.0_scaffold90G27888' => 'sas', 'SHI08601' => 'shi', 'SHI08606' => 'shi', 'SHI17117' => 'shi', 'SHI17119' => 'shi', 'SMO118G0201' => 'smo', 'SMO169G0247' => 'smo', 'SMO176G0006' => 'smo', 'SMO176G0015' => 'smo', 'SMO202G0006' => 'smo', 'SMO240G0050' => 'smo', 'SMO286G0009' => 'smo', 'SMO338G0033' => 'smo', 'SMO356G0533' => 'smo', 'SMO364G0382' => 'smo', 'SMO367G0166' => 'smo', 'SMO367G1098' => 'smo', 'Solyc01g009920.3' => 'sly', 'Solyc01g099300.3' => 'sly', 'Solyc02g084700.3' => 'sly', 'Solyc03g097520.3' => 'sly', 'Solyc06g071580.3' => 'sly', 'Solyc10g081760.3' => 'sly', 'Sopen01g005480' => 'spe', 'Sopen01g042850' => 'spe', 'Sopen02g029370' => 'spe', 'Sopen03g028280' => 'spe', 'Sopen06g027870' => 'spe', 'Sopen10g032270' => 'spe', 'Sp5g18180' => 'spa', 'Sp6g12880' => 'spa', 'Sp6g30850' => 'spa', 'Sp7g22960' => 'spa', 'Sp7g34010' => 'spa', 'SpUn1326_0010' => 'spa', 'TAR371G0242' => 'tar', 'TAR622G0638' => 'tar', 'TAR628G1548' => 'tar', 'TAR629G1079' => 'tar', 'TAR629G3413' => 'tar', 'THA.LOC104804249' => 'tha', 'THA.LOC104808315' => 'tha', 'THA.LOC104809238' => 'tha', 'THA.LOC104825484' => 'tha', 'Thecc.01G025500' => 'tca', 'Thecc.03G015800' => 'tca', 'Thecc.03G018000' => 'tca', 'Thecc.03G134800' => 'tca', 'Thecc.04G014700' => 'tca', 'Thhalv10006991m.g' => 'esa', 'Thhalv10012707m.g' => 'esa', 'Thhalv10015739m.g' => 'esa', 'Thhalv10024553m.g' => 'esa', 'Thhalv10024673m.g' => 'esa', 'Thhalv10029187m.g' => 'esa', 'TPR.G12971' => 'tpr', 'TPR.G29396' => 'tpr', 'TPR.G33376' => 'tpr', 'TPR.G35508' => 'tpr', 'TPR.G35516' => 'tpr', 'TPR.G37317' => 'tpr', 'TPR.G37389' => 'tpr', 'TPR.G37523' => 'tpr', 'TPR.G559' => 'tpr', 'TWI14G0070' => 'twi', 'TWI14G0729' => 'twi', 'TWI18G0596' => 'twi', 'TWI39G0780' => 'twi', 'TWI39G0850' => 'twi', 'TWI73G1052' => 'twi', 'unitig_52.g17485' => 'ugi', 'unitig_61.g26355' => 'ugi', 'vmacro01040' => 'vma', 'vmacro16731' => 'vma', 'vmacro18270' => 'vma', 'vmacro19142' => 'vma', 'vmacro19407' => 'vma', 'vmacro19408' => 'vma', 'vmacro21899' => 'vma', 'vmacro21900' => 'vma', 'vmacro21901' => 'vma', 'VMungo0251G0490' => 'vmu', 'VMungo0251G1748' => 'vmu', 'VMungo1309G0421' => 'vmu', 'Zm00001eb086500' => 'zma', 'Zm00001eb150680' => 'zma', 'Zm00001eb162330' => 'zma', 'Zm00001eb203130' => 'zma', 'Zm00001eb369480' => 'zma', 'Zm00001eb382340' => 'zma', 'Zm00001eb416360' => 'zma' ), 'gf_id' => 'HOM05D000902', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000902' ), 'data_identifier' => 'HOM05D000902', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000902', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '663', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02470' => 'bna', 'A01p16260' => 'bna', 'A02p01680' => 'bna', 'A03p16600' => 'bna', 'A03p55660' => 'bna', 'A03p64160' => 'bna', 'A03p64170' => 'bna', 'A08p31900' => 'bna', 'A09p59530' => 'bna', 'A10p08230' => 'bna', 'A10p25090' => 'bna', 'Aa31LG3G7100' => 'aar', 'Aa31LG3G7110' => 'aar', 'Aa31LG6G13160' => 'aar', 'Aa31LG7G10770' => 'aar', 'Aa31LG7G3830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2723' => 'aag', 'Actinidia08045' => 'ach', 'Actinidia08888' => 'ach', 'Actinidia18333' => 'ach', 'Actinidia19334' => 'ach', 'Actinidia25552' => 'ach', 'Actinidia26089' => 'ach', 'Actinidia30615' => 'ach', 'Actinidia30616' => 'ach', 'Actinidia33083' => 'ach', 'Actinidia35762' => 'ach', 'Ah.02g110620' => 'amhyb', 'Ah.11g046390' => 'amhyb', 'AL1G31670' => 'aly', 'AL6G23730' => 'aly', 'AL7G14740' => 'aly', 'AL7G14750' => 'aly', 'AL7G14760' => 'aly', 'AL7G28220' => 'aly', 'AL8G24940' => 'aly', 'Aqoxy3G01665' => 'aox', 'Aqoxy3G02853' => 'aox', 'Aqoxy5G01513' => 'aox', 'Aqoxy5G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8SKA4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ75LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKDA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0LJZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7REX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZP4YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWX7I5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2QKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS0L9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPCD8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q161UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC7XCF' => 'arhy', 'AT1G19100' => 'ath', 'AT4G24970' => 'ath', 'AT4G36270' => 'ath', 'AT4G36280' => 'ath', 'AT4G36290' => 'ath', 'AT5G13130' => 'ath', 'AT5G50780' => 'ath', 'ATR0582G266' => 'atr', 'ATR0661G195' => 'atr', 'ATR1152G031' => 'atr', 'Atru.chr11.2382' => 'acertr', 'Atru.chr12.2337' => 'acertr', 'Atru.chr3.744' => 'acertr', 'Atru.chr6.1870' => 'acertr', 'Atru.chr9.2515' => 'acertr', 'AUR62004120' => 'cqu', 'AUR62005667' => 'cqu', 'AUR62007634' => 'cqu', 'AUR62008186' => 'cqu', 'AUR62008187' => 'cqu', 'AUR62008188' => 'cqu', 'AUR62027954' => 'cqu', 'AUR62028766' => 'cqu', 'AUR62028767' => 'cqu', 'AUR62028768' => 'cqu', 'AUR62028886' => 'cqu', 'AUR62029563' => 'cqu', 'AUR62038832' => 'cqu', 'BcaB01g04149' => 'bca', 'BcaB03g12940' => 'bca', 'BcaB03g13090' => 'bca', 'BcaB03g14466' => 'bca', 'BcaB05g24035' => 'bca', 'BcaC01g06050' => 'bca', 'BcaC04g19148' => 'bca', 'BcaC04g20761' => 'bca', 'BcaC06g32845' => 'bca', 'BcaC07g41274' => 'bca', 'BcaC09g50827' => 'bca', 'BcaNung00741' => 'bca', 'BcaNung00742' => 'bca', 'BcaNung01859' => 'bca', 'BcaNung03985' => 'bca', 'BcaNung03989' => 'bca', 'BcaNung05661' => 'bca', 'BolC1t00257H' => 'bol', 'BolC1t01956H' => 'bol', 'BolC2t06534H' => 'bol', 'BolC3t14334H' => 'bol', 'BolC5t30451H' => 'bol', 'BolC7t45880H' => 'bol', 'BolC7t46586H' => 'bol', 'BolC8t49301H' => 'bol', 'BolC8t51837H' => 'bol', 'BolC9t56822H' => 'bol', 'BolC9t59235H' => 'bol', 'BraA01t00234Z' => 'bra', 'BraA01t01563Z' => 'bra', 'BraA02t05147Z' => 'bra', 'BraA03t10947Z' => 'bra', 'BraA03t14633Z' => 'bra', 'BraA08t35112Z' => 'bra', 'BraA09t41330Z' => 'bra', 'BraA10t44570Z' => 'bra', 'C01p02670' => 'bna', 'C01p20260' => 'bna', 'C02p05890' => 'bna', 'C03p19530' => 'bna', 'C05p17470' => 'bna', 'C07p53900' => 'bna', 'C07p61630' => 'bna', 'C08p16800' => 'bna', 'C08p42810' => 'bna', 'C09p39480' => 'bna', 'C09p63980' => 'bna', 'CAN.G1001.7' => 'can', 'CAN.G1034.55' => 'can', 'CAN.G143.7' => 'can', 'CAN.G3340.1' => 'can', 'CAN.G358.19' => 'can', 'CAN.G373.2' => 'can', 'CAN.G674.16' => 'can', 'CAN.G674.17' => 'can', 'CAN.G674.18' => 'can', 'CAN.G732.2' => 'can', 'CAN.G732.3' => 'can', 'CAN.G993.39' => 'can', 'CANSAT01G2052' => 'cansat', 'CANSAT80G0070' => 'cansat', 'CANSAT80G0483' => 'cansat', 'CANSAT80G0625' => 'cansat', 'CARHR019690' => 'chi', 'CARHR080280' => 'chi', 'CARHR152750' => 'chi', 'CARHR152760' => 'chi', 'CARHR152770' => 'chi', 'CARHR200340' => 'chi', 'CARHR232370' => 'chi', 'CARHR244670' => 'chi', 'CARHR244680' => 'chi', 'CARHR257520' => 'chi', 'Carub.0001s1872' => 'cru', 'Carub.0006s1130' => 'cru', 'Carub.0007s0396' => 'cru', 'Carub.0007s0397' => 'cru', 'Carub.0007s1608' => 'cru', 'Carub.0008s1068' => 'cru', 'Carub.0008s1077' => 'cru', 'Ca_16158_v3' => 'car', 'Ca_17571_v3' => 'car', 'Ca_21936_v3' => 'car', 'Ca_22350_v3' => 'car', 'CBR_g22445' => 'cbr', 'CBR_g26290' => 'cbr', 'Cc04_g09610' => 'ccan', 'Cc04_g12280' => 'ccan', 'Cc07_g10230' => 'ccan', 'CDE02G0093' => 'cde', 'CDE02G0701' => 'cde', 'CDE04G1050' => 'cde', 'CDE05G1833' => 'cde', 'CDE05G3058' => 'cde', 'CDE05G3380' => 'cde', 'CDE06G0536' => 'cde', 'Cfa006923' => 'cfa', 'Cfa009402' => 'cfa', 'Cfa018751' => 'cfa', 'Cfa019164' => 'cfa', 'Cfa022935' => 'cfa', 'Ciclev10019081m.g' => 'ccl', 'Ciclev10025076m.g' => 'ccl', 'Ciclev10030712m.g' => 'ccl', 'Ciclev10033760m.g' => 'ccl', 'CiPaw.05G105600' => 'cil', 'CiPaw.08G136700' => 'cil', 'CiPaw.11G003900' => 'cil', 'CiPaw.11G023700' => 'cil', 'CiPaw.12G003700' => 'cil', 'ClCG06G017100' => 'cla', 'ClCG06G018110' => 'cla', 'ClCG07G008800' => 'cla', 'ClCG07G015330' => 'cla', 'COL.COLO4_13698' => 'col', 'COL.COLO4_16659' => 'col', 'COL.COLO4_21986' => 'col', 'COL.COLO4_24049' => 'col', 'COL.COLO4_29061' => 'col', 'COL.COLO4_29075' => 'col', 'COL.COLO4_30094' => 'col', 'Cpa.g.c33689' => 'cpa', 'Cpa.g.sc108.39' => 'cpa', 'Cpa.g.sc108.41' => 'cpa', 'Cpa.g.sc1163.1' => 'cpa', 'Cpa.g.sc4.155' => 'cpa', 'Cpa.g.sc6.194' => 'cpa', 'CsaV3_1G000340' => 'csa', 'CsaV3_1G001400' => 'csa', 'CsaV3_4G002220' => 'csa', 'CsaV3_4G005370' => 'csa', 'CSS0007487' => 'camsi', 'CSS0008066' => 'camsi', 'CSS0009120' => 'camsi', 'CSS0015512' => 'camsi', 'CSS0022409' => 'camsi', 'CSS0025358' => 'camsi', 'CSS0044547' => 'camsi', 'DCAR_013057' => 'dca', 'DCAR_015058' => 'dca', 'DCAR_016027' => 'dca', 'DCAR_017327' => 'dca', 'DCAR_020743' => 'dca', 'DCAR_026157' => 'dca', 'DCAR_032339' => 'dca', 'DCAR_032340' => 'dca', 'Dinv11200' => 'din', 'Dinv11201' => 'din', 'Dinv20631' => 'din', 'Dinv23182' => 'din', 'Dinv33466' => 'din', 'Dinv33583' => 'din', 'Dinv38565' => 'din', 'Duzib068G0200' => 'dzi', 'Duzib147G0132' => 'dzi', 'Duzib147G0635' => 'dzi', 'Duzib205G1670' => 'dzi', 'Duzib251G0606' => 'dzi', 'ECA232G3336' => 'eca', 'ECA232G3763' => 'eca', 'ECA232G4845' => 'eca', 'ECA234G1607' => 'eca', 'ECA246G0932' => 'eca', 'ECA247G0781' => 'eca', 'ECA247G1932' => 'eca', 'ECA247G2079' => 'eca', 'ECA247G3338' => 'eca', 'ECA247G4115' => 'eca', 'EL10Ac3g06552' => 'bvu', 'EL10Ac5g10721' => 'bvu', 'EL10Ac5g10722' => 'bvu', 'EL10Ac5g10723' => 'bvu', 'EL10Ac5g11361' => 'bvu', 'EL10Ac6g13553' => 'bvu', 'EL10As8g23872' => 'bvu', 'Eucgr.B00250' => 'egr', 'Eucgr.B00251' => 'egr', 'Eucgr.B03533' => 'egr', 'Eucgr.I02381' => 'egr', 'Eucgr.K02700' => 'egr', 'FAN02G0174' => 'fan', 'FAN02G3146' => 'fan', 'FAN04G1672' => 'fan', 'FAN04G2273' => 'fan', 'FAN05G2791' => 'fan', 'FAN05G4035' => 'fan', 'FAN07G0834' => 'fan', 'FAN08G1198' => 'fan', 'FAN09G4182' => 'fan', 'FAN12G0496' => 'fan', 'FAN13G1027' => 'fan', 'FAN13G2951' => 'fan', 'FAN14G0705' => 'fan', 'FAN14G0720' => 'fan', 'FAN17G0201' => 'fan', 'FAN17G2665' => 'fan', 'FAN18G1456' => 'fan', 'FAN18G1525' => 'fan', 'FAN18G3500' => 'fan', 'FAN28G2670' => 'fan', 'FvH4_1g12391' => 'fve', 'FvH4_4g23220' => 'fve', 'FvH4_5g08810' => 'fve', 'FvH4_5g28960' => 'fve', 'FvH4_6g42820' => 'fve', 'FvH4_6g51110' => 'fve', 'Glyma.02G051802' => 'gma', 'Glyma.04G185300' => 'gma', 'Glyma.05G202900' => 'gma', 'Glyma.08G010300' => 'gma', 'Glyma.16G131900' => 'gma', 'Glyma.17G087900' => 'gma', 'Gohir.A07G048600' => 'ghi', 'Gohir.A11G179000' => 'ghi', 'Gohir.A12G140900' => 'ghi', 'Gohir.A12G140950' => 'ghi', 'Gohir.A12G191700' => 'ghi', 'Gohir.A13G086300' => 'ghi', 'Gohir.D07G052900' => 'ghi', 'Gohir.D11G186600' => 'ghi', 'Gohir.D12G145575' => 'ghi', 'Gohir.D12G145650' => 'ghi', 'Gohir.D12G145725' => 'ghi', 'Gohir.D12G194050' => 'ghi', 'Gohir.D13G091800' => 'ghi', 'Gorai.001G055900' => 'gra', 'Gorai.007G198400' => 'gra', 'Gorai.008G157000' => 'gra', 'Gorai.008G157100' => 'gra', 'Gorai.008G208700' => 'gra', 'Gorai.010G138700' => 'gra', 'GSVIVG01000977001' => 'vvi', 'GSVIVG01007708001' => 'vvi', 'GSVIVG01008587001' => 'vvi', 'GSVIVG01018849001' => 'vvi', 'GSVIVG01032432001' => 'vvi', 'HanXRQChr02g0034131' => 'han', 'HanXRQChr02g0035981' => 'han', 'HanXRQChr02g0035991' => 'han', 'HanXRQChr05g0155611' => 'han', 'HanXRQChr05g0155621' => 'han', 'HanXRQChr08g0236501' => 'han', 'HanXRQChr09g0261321' => 'han', 'HanXRQChr09g0272081' => 'han', 'HanXRQChr10g0310741' => 'han', 'HanXRQChr11g0325591' => 'han', 'HanXRQChr12g0385691' => 'han', 'HanXRQChr13g0387801' => 'han', 'HanXRQChr15g0463011' => 'han', 'Haze_03826' => 'cav', 'Haze_03827' => 'cav', 'Haze_07183' => 'cav', 'Haze_07537' => 'cav', 'Haze_07539' => 'cav', 'Haze_12461' => 'cav', 'Haze_16115' => 'cav', 'Haze_16808' => 'cav', 'Haze_18531' => 'cav', 'Hma1.2p1_0046F.1_g026700' => 'hma', 'Hma1.2p1_0046F.1_g026710' => 'hma', 'Hma1.2p1_0168F.1_g074340' => 'hma', 'Hma1.2p1_0266F.1_g107030' => 'hma', 'Hma1.2p1_0266F.1_g107060' => 'hma', 'Hma1.2p1_0275F.1_g110510' => 'hma', 'Hma1.2p1_0592F.1_g185490' => 'hma', 'Hma1.2p1_0592F.1_g185500' => 'hma', 'Hma1.2p1_0592F.1_g185510' => 'hma', 'Hma1.2p1_0592F.1_g185520' => 'hma', 'Hma1.2p1_0592F.1_g185530' => 'hma', 'Hma1.2p1_0818F.1_g223450' => 'hma', 'HPP92_009708' => 'vpl', 'HPP92_009793' => 'vpl', 'HPP92_009796' => 'vpl', 'HPP92_009797' => 'vpl', 'HPP92_014940' => 'vpl', 'HPP92_014988' => 'vpl', 'Hund02463' => 'sun', 'Hund02760' => 'sun', 'Hund05071' => 'sun', 'Hund10108' => 'sun', 'Hund11204' => 'sun', 'Hund14016' => 'sun', 'Hund16464' => 'sun', 'Lalb_Chr09g0333391' => 'lal', 'Lalb_Chr11g0070461' => 'lal', 'Lalb_Chr12g0201671' => 'lal', 'Lalb_Chr13g0297161' => 'lal', 'Lj1g0002823' => 'lja', 'Lj3C1074T6' => 'lonja', 'Lj4A212T28' => 'lonja', 'Lj4g0005516' => 'lja', 'Lj4g0013705' => 'lja', 'Lj4g0027865' => 'lja', 'Lj5C92G16' => 'lonja', 'Lj5C92T12' => 'lonja', 'Lj7C596T3' => 'lonja', 'Lj9A446G59' => 'lonja', 'Lj9A482G21' => 'lonja', 'Lsat_1_v5_gn_1_28261' => 'lsa', 'Lsat_1_v5_gn_1_28281' => 'lsa', 'Lsat_1_v5_gn_1_32721' => 'lsa', 'Lsat_1_v5_gn_4_151760' => 'lsa', 'Lsat_1_v5_gn_4_2120' => 'lsa', 'Lsat_1_v5_gn_4_75761' => 'lsa', 'Lsat_1_v5_gn_5_10920' => 'lsa', 'Manes.02G099900' => 'mes', 'Manes.11G096200' => 'mes', 'Manes.12G007200' => 'mes', 'Manes.14G048300' => 'mes', 'Manes.17G114700' => 'mes', 'Mapoly0002s0070' => 'mpo', 'Mapoly0029s0099' => 'mpo', 'MBI07_g24742_MAGBIO' => 'mbi', 'MBI10_g27988_MAGBIO' => 'mbi', 'MBI11_g13057_MAGBIO' => 'mbi', 'MD02G1137200' => 'mdo', 'MD06G1137200' => 'mdo', 'MD07G1122300' => 'mdo', 'MD09G1078200' => 'mdo', 'MD13G1123700' => 'mdo', 'MD14G1151900' => 'mdo', 'MD17G1030900' => 'mdo', 'MD17G1068200' => 'mdo', 'MD17G1068600' => 'mdo', 'Medtr3g077540' => 'mtr', 'Medtr4g105530' => 'mtr', 'Medtr8g076580' => 'mtr', 'Medtr8g076590' => 'mtr', 'Medtr8g096410' => 'mtr', 'MELO3C016411.2' => 'cme', 'MELO3C017780.2' => 'cme', 'MELO3C022560.2' => 'cme', 'MELO3C026187.2' => 'cme', 'MELO3C026286.2' => 'cme', 'MELO3C032854.2' => 'cme', 'Migut.H02495' => 'egut', 'Migut.I00561' => 'egut', 'Migut.K01015' => 'egut', 'Migut.K01016' => 'egut', 'Migut.L00743' => 'egut', 'Migut.L00744' => 'egut', 'Migut.L00746' => 'egut', 'Migut.L00798' => 'egut', 'Migut.L00799' => 'egut', 'Migut.N02096' => 'egut', 'MSTRG.11259' => 'ama', 'MSTRG.23142' => 'ama', 'MSTRG.2499' => 'ama', 'Nitab4.5_0000003g0730' => 'nta', 'Nitab4.5_0000137g0020' => 'nta', 'Nitab4.5_0000721g0210' => 'nta', 'Nitab4.5_0000723g0050' => 'nta', 'Nitab4.5_0000913g0070' => 'nta', 'Nitab4.5_0001332g0040' => 'nta', 'Nitab4.5_0001771g0050' => 'nta', 'Nitab4.5_0001918g0050' => 'nta', 'Nitab4.5_0002686g0030' => 'nta', 'Nitab4.5_0003156g0020' => 'nta', 'Nitab4.5_0003383g0040' => 'nta', 'Nitab4.5_0003918g0010' => 'nta', 'Nitab4.5_0006760g0010' => 'nta', 'Nn1g05981' => 'nnu', 'Nn1g06288' => 'nnu', 'Nn3g16371' => 'nnu', 'Nn3g16786' => 'nnu', 'Nn4g22232' => 'nnu', 'Oeu005144.1' => 'oeu', 'Oeu005145.1' => 'oeu', 'Oeu011348.1' => 'oeu', 'Oeu016415.1' => 'oeu', 'Oeu023501.1' => 'oeu', 'Oeu044473.1' => 'oeu', 'Oeu048892.2' => 'oeu', 'Os01g0549200' => 'osa', 'Os02g0469300' => 'osa', 'Os04g0311100' => 'osa', 'Os06g0474900' => 'osa', 'Os10g0181700' => 'osa', 'Os11g0454800' => 'osa', 'Peaxi162Scf00037g00714' => 'pax', 'Peaxi162Scf00084g01217' => 'pax', 'Peaxi162Scf00257g00217' => 'pax', 'Peaxi162Scf00516g00215' => 'pax', 'Peaxi162Scf00689g00123' => 'pax', 'PGR044G2719' => 'pgr', 'PGR083G1360' => 'pgr', 'PGR102G2849' => 'pgr', 'PGR119G2534' => 'pgr', 'PGSC0003DMG400003538' => 'stu', 'PGSC0003DMG400028138' => 'stu', 'PGSC0003DMG400031732' => 'stu', 'PGSC0003DMG400038165' => 'stu', 'Phvul.002G284600' => 'pvu', 'Phvul.003G258200' => 'pvu', 'Phvul.009G176500' => 'pvu', 'Potri.003G167201' => 'ptr', 'Potri.005G118400' => 'ptr', 'Potri.012G089000' => 'ptr', 'Potri.012G102800' => 'ptr', 'Potri.015G079400' => 'ptr', 'Potri.015G100900' => 'ptr', 'Pp3c14_9810' => 'ppa', 'Pp3c15_10450' => 'ppa', 'Pp3c20_19150' => 'ppa', 'Pp3c23_12740' => 'ppa', 'Pp3c23_6310' => 'ppa', 'Pp3c24_3720' => 'ppa', 'Pp3c27_2580' => 'ppa', 'Pp3c9_8990' => 'ppa', 'PRCOL_00002854' => 'pco', 'Prupe.1G221200' => 'ppe', 'Prupe.3G289000' => 'ppe', 'Prupe.5G147000' => 'ppe', 'Prupe.6G157300' => 'ppe', 'Prupe.7G163400' => 'ppe', 'Psat0s2177g0040' => 'psa', 'Psat3g174760' => 'psa', 'Psat3g192160' => 'psa', 'Psat4g058520' => 'psa', 'Psat4g096840' => 'psa', 'Psat7g037320' => 'psa', 'PSO017G1274' => 'pso', 'PSO017G5166' => 'pso', 'PSO063G4558' => 'pso', 'PSO170G4458' => 'pso', 'PSO170G5005' => 'pso', 'PSO210G6156' => 'pso', 'PSO210G6635' => 'pso', 'PSO210G7397' => 'pso', 'PSO210G7700' => 'pso', 'PSO455G0035' => 'pso', 'PSO455G0180' => 'pso', 'PSO478G4515' => 'pso', 'PSO832G1305' => 'pso', 'PSO832G3489' => 'pso', 'QL02p075247' => 'qlo', 'QL03p051148' => 'qlo', 'QL05p010313' => 'qlo', 'QL06p034627' => 'qlo', 'QL10p001889' => 'qlo', 'QL10p010846' => 'qlo', 'RcHm_v2.0_Chr1g0350621' => 'rch', 'RcHm_v2.0_Chr1g0350641' => 'rch', 'RcHm_v2.0_Chr2g0092891' => 'rch', 'RcHm_v2.0_Chr2g0100251' => 'rch', 'RcHm_v2.0_Chr2g0158661' => 'rch', 'RcHm_v2.0_Chr2g0172741' => 'rch', 'RcHm_v2.0_Chr4g0429571' => 'rch', 'RcHm_v2.0_Chr5g0042471' => 'rch', 'RcHm_v2.0_Chr7g0189451' => 'rch', 'Rhsim08G0052000' => 'rsi', 'Rhsim08G0174400' => 'rsi', 'Rhsim08G0193200' => 'rsi', 'Rhsim10G0214800' => 'rsi', 'Rhsim10G0214900' => 'rsi', 'Rhsim10G0215000' => 'rsi', 'Rhsim12G0022900' => 'rsi', 'Rhsim12G0177500' => 'rsi', 'Rhsim12G0177700' => 'rsi', 'Sabra03G0122600' => 'sbr', 'Sabra05G0097400' => 'sbr', 'Sabra12G0064100' => 'sbr', 'Sabra15G0121300' => 'sbr', 'SalBow2G0642' => 'sbo', 'SalBow5G2667' => 'sbo', 'SalBow5G4873' => 'sbo', 'SalBow8G2395' => 'sbo', 'Sc03g0003290' => 'sci', 'Sc10g0010130' => 'sci', 'Sc22g0003650' => 'sci', 'Sed0001603' => 'sed', 'Sed0004259' => 'sed', 'Sed0006789' => 'sed', 'Sed0011838' => 'sed', 'Sed0012964' => 'sed', 'Sed0016383' => 'sed', 'Sed0019010' => 'sed', 'Sed0020188' => 'sed', 'SEGI_04702' => 'sgi', 'SEGI_17231' => 'sgi', 'SEGI_18877' => 'sgi', 'SEGI_25196' => 'sgi', 'SEGI_25515' => 'sgi', 'SEGI_28445' => 'sgi', 'SEGI_37452' => 'sgi', 'SGA_v2.0_scaffold188G40336' => 'sas', 'SGA_v2.0_scaffold228G43247' => 'sas', 'SGA_v2.0_scaffold280G46853' => 'sas', 'SGA_v2.0_scaffold34G13808' => 'sas', 'SGA_v2.0_scaffold40G15576' => 'sas', 'SGA_v2.0_scaffold611G53188' => 'sas', 'SGA_v2.0_scaffold78G25461' => 'sas', 'SGA_v2.0_scaffold90G27888' => 'sas', 'SHI08601' => 'shi', 'SHI08606' => 'shi', 'SHI17117' => 'shi', 'SHI17119' => 'shi', 'SMO118G0201' => 'smo', 'SMO169G0247' => 'smo', 'SMO176G0006' => 'smo', 'SMO176G0015' => 'smo', 'SMO202G0006' => 'smo', 'SMO240G0050' => 'smo', 'SMO286G0009' => 'smo', 'SMO338G0033' => 'smo', 'SMO356G0533' => 'smo', 'SMO364G0382' => 'smo', 'SMO367G0166' => 'smo', 'SMO367G1098' => 'smo', 'Solyc01g009920.3' => 'sly', 'Solyc01g099300.3' => 'sly', 'Solyc02g084700.3' => 'sly', 'Solyc03g097520.3' => 'sly', 'Solyc06g071580.3' => 'sly', 'Solyc10g081760.3' => 'sly', 'Sopen01g005480' => 'spe', 'Sopen01g042850' => 'spe', 'Sopen02g029370' => 'spe', 'Sopen03g028280' => 'spe', 'Sopen06g027870' => 'spe', 'Sopen10g032270' => 'spe', 'Sp5g18180' => 'spa', 'Sp6g12880' => 'spa', 'Sp6g30850' => 'spa', 'Sp7g22960' => 'spa', 'Sp7g34010' => 'spa', 'SpUn1326_0010' => 'spa', 'TAR371G0242' => 'tar', 'TAR622G0638' => 'tar', 'TAR628G1548' => 'tar', 'TAR629G1079' => 'tar', 'TAR629G3413' => 'tar', 'THA.LOC104804249' => 'tha', 'THA.LOC104808315' => 'tha', 'THA.LOC104809238' => 'tha', 'THA.LOC104825484' => 'tha', 'Thecc.01G025500' => 'tca', 'Thecc.03G015800' => 'tca', 'Thecc.03G018000' => 'tca', 'Thecc.03G134800' => 'tca', 'Thecc.04G014700' => 'tca', 'Thhalv10006991m.g' => 'esa', 'Thhalv10012707m.g' => 'esa', 'Thhalv10015739m.g' => 'esa', 'Thhalv10024553m.g' => 'esa', 'Thhalv10024673m.g' => 'esa', 'Thhalv10029187m.g' => 'esa', 'TPR.G12971' => 'tpr', 'TPR.G29396' => 'tpr', 'TPR.G33376' => 'tpr', 'TPR.G35508' => 'tpr', 'TPR.G35516' => 'tpr', 'TPR.G37317' => 'tpr', 'TPR.G37389' => 'tpr', 'TPR.G37523' => 'tpr', 'TPR.G559' => 'tpr', 'TWI14G0070' => 'twi', 'TWI14G0729' => 'twi', 'TWI18G0596' => 'twi', 'TWI39G0780' => 'twi', 'TWI39G0850' => 'twi', 'TWI73G1052' => 'twi', 'unitig_52.g17485' => 'ugi', 'unitig_61.g26355' => 'ugi', 'vmacro01040' => 'vma', 'vmacro16731' => 'vma', 'vmacro18270' => 'vma', 'vmacro19142' => 'vma', 'vmacro19407' => 'vma', 'vmacro19408' => 'vma', 'vmacro21899' => 'vma', 'vmacro21900' => 'vma', 'vmacro21901' => 'vma', 'VMungo0251G0490' => 'vmu', 'VMungo0251G1748' => 'vmu', 'VMungo1309G0421' => 'vmu', 'Zm00001eb086500' => 'zma', 'Zm00001eb150680' => 'zma', 'Zm00001eb162330' => 'zma', 'Zm00001eb203130' => 'zma', 'Zm00001eb369480' => 'zma', 'Zm00001eb382340' => 'zma', 'Zm00001eb416360' => 'zma' ) $gf_id = 'HOM05D000902' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000902' ) $data_identifier = 'HOM05D000902' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 13, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 10, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 6, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 9, 'hma' => (int) 12, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 4, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 6, 'ppa' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 6, 'rch' => (int) 9, 'rsi' => (int) 9, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 12, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 3, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416360' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000902', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '663', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02470' => 'bna', 'A01p16260' => 'bna', 'A02p01680' => 'bna', 'A03p16600' => 'bna', 'A03p55660' => 'bna', 'A03p64160' => 'bna', 'A03p64170' => 'bna', 'A08p31900' => 'bna', 'A09p59530' => 'bna', 'A10p08230' => 'bna', 'A10p25090' => 'bna', 'Aa31LG3G7100' => 'aar', 'Aa31LG3G7110' => 'aar', 'Aa31LG6G13160' => 'aar', 'Aa31LG7G10770' => 'aar', 'Aa31LG7G3830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2723' => 'aag', 'Actinidia08045' => 'ach', 'Actinidia08888' => 'ach', 'Actinidia18333' => 'ach', 'Actinidia19334' => 'ach', 'Actinidia25552' => 'ach', 'Actinidia26089' => 'ach', 'Actinidia30615' => 'ach', 'Actinidia30616' => 'ach', 'Actinidia33083' => 'ach', 'Actinidia35762' => 'ach', 'Ah.02g110620' => 'amhyb', 'Ah.11g046390' => 'amhyb', 'AL1G31670' => 'aly', 'AL6G23730' => 'aly', 'AL7G14740' => 'aly', 'AL7G14750' => 'aly', 'AL7G14760' => 'aly', 'AL7G28220' => 'aly', 'AL8G24940' => 'aly', 'Aqoxy3G01665' => 'aox', 'Aqoxy3G02853' => 'aox', 'Aqoxy5G01513' => 'aox', 'Aqoxy5G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8SKA4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ75LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKDA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0LJZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7REX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZP4YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWX7I5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2QKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS0L9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPCD8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q161UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC7XCF' => 'arhy', 'AT1G19100' => 'ath', 'AT4G24970' => 'ath', 'AT4G36270' => 'ath', 'AT4G36280' => 'ath', 'AT4G36290' => 'ath', 'AT5G13130' => 'ath', 'AT5G50780' => 'ath', 'ATR0582G266' => 'atr', 'ATR0661G195' => 'atr', 'ATR1152G031' => 'atr', 'Atru.chr11.2382' => 'acertr', 'Atru.chr12.2337' => 'acertr', 'Atru.chr3.744' => 'acertr', 'Atru.chr6.1870' => 'acertr', 'Atru.chr9.2515' => 'acertr', 'AUR62004120' => 'cqu', 'AUR62005667' => 'cqu', 'AUR62007634' => 'cqu', 'AUR62008186' => 'cqu', 'AUR62008187' => 'cqu', 'AUR62008188' => 'cqu', 'AUR62027954' => 'cqu', 'AUR62028766' => 'cqu', 'AUR62028767' => 'cqu', 'AUR62028768' => 'cqu', 'AUR62028886' => 'cqu', 'AUR62029563' => 'cqu', 'AUR62038832' => 'cqu', 'BcaB01g04149' => 'bca', 'BcaB03g12940' => 'bca', 'BcaB03g13090' => 'bca', 'BcaB03g14466' => 'bca', 'BcaB05g24035' => 'bca', 'BcaC01g06050' => 'bca', 'BcaC04g19148' => 'bca', 'BcaC04g20761' => 'bca', 'BcaC06g32845' => 'bca', 'BcaC07g41274' => 'bca', 'BcaC09g50827' => 'bca', 'BcaNung00741' => 'bca', 'BcaNung00742' => 'bca', 'BcaNung01859' => 'bca', 'BcaNung03985' => 'bca', 'BcaNung03989' => 'bca', 'BcaNung05661' => 'bca', 'BolC1t00257H' => 'bol', 'BolC1t01956H' => 'bol', 'BolC2t06534H' => 'bol', 'BolC3t14334H' => 'bol', 'BolC5t30451H' => 'bol', 'BolC7t45880H' => 'bol', 'BolC7t46586H' => 'bol', 'BolC8t49301H' => 'bol', 'BolC8t51837H' => 'bol', 'BolC9t56822H' => 'bol', 'BolC9t59235H' => 'bol', 'BraA01t00234Z' => 'bra', 'BraA01t01563Z' => 'bra', 'BraA02t05147Z' => 'bra', 'BraA03t10947Z' => 'bra', 'BraA03t14633Z' => 'bra', 'BraA08t35112Z' => 'bra', 'BraA09t41330Z' => 'bra', 'BraA10t44570Z' => 'bra', 'C01p02670' => 'bna', 'C01p20260' => 'bna', 'C02p05890' => 'bna', 'C03p19530' => 'bna', 'C05p17470' => 'bna', 'C07p53900' => 'bna', 'C07p61630' => 'bna', 'C08p16800' => 'bna', 'C08p42810' => 'bna', 'C09p39480' => 'bna', 'C09p63980' => 'bna', 'CAN.G1001.7' => 'can', 'CAN.G1034.55' => 'can', 'CAN.G143.7' => 'can', 'CAN.G3340.1' => 'can', 'CAN.G358.19' => 'can', 'CAN.G373.2' => 'can', 'CAN.G674.16' => 'can', 'CAN.G674.17' => 'can', 'CAN.G674.18' => 'can', 'CAN.G732.2' => 'can', 'CAN.G732.3' => 'can', 'CAN.G993.39' => 'can', 'CANSAT01G2052' => 'cansat', 'CANSAT80G0070' => 'cansat', 'CANSAT80G0483' => 'cansat', 'CANSAT80G0625' => 'cansat', 'CARHR019690' => 'chi', 'CARHR080280' => 'chi', 'CARHR152750' => 'chi', 'CARHR152760' => 'chi', 'CARHR152770' => 'chi', 'CARHR200340' => 'chi', 'CARHR232370' => 'chi', 'CARHR244670' => 'chi', 'CARHR244680' => 'chi', 'CARHR257520' => 'chi', 'Carub.0001s1872' => 'cru', 'Carub.0006s1130' => 'cru', 'Carub.0007s0396' => 'cru', 'Carub.0007s0397' => 'cru', 'Carub.0007s1608' => 'cru', 'Carub.0008s1068' => 'cru', 'Carub.0008s1077' => 'cru', 'Ca_16158_v3' => 'car', 'Ca_17571_v3' => 'car', 'Ca_21936_v3' => 'car', 'Ca_22350_v3' => 'car', 'CBR_g22445' => 'cbr', 'CBR_g26290' => 'cbr', 'Cc04_g09610' => 'ccan', 'Cc04_g12280' => 'ccan', 'Cc07_g10230' => 'ccan', 'CDE02G0093' => 'cde', 'CDE02G0701' => 'cde', 'CDE04G1050' => 'cde', 'CDE05G1833' => 'cde', 'CDE05G3058' => 'cde', 'CDE05G3380' => 'cde', 'CDE06G0536' => 'cde', 'Cfa006923' => 'cfa', 'Cfa009402' => 'cfa', 'Cfa018751' => 'cfa', 'Cfa019164' => 'cfa', 'Cfa022935' => 'cfa', 'Ciclev10019081m.g' => 'ccl', 'Ciclev10025076m.g' => 'ccl', 'Ciclev10030712m.g' => 'ccl', 'Ciclev10033760m.g' => 'ccl', 'CiPaw.05G105600' => 'cil', 'CiPaw.08G136700' => 'cil', 'CiPaw.11G003900' => 'cil', 'CiPaw.11G023700' => 'cil', 'CiPaw.12G003700' => 'cil', 'ClCG06G017100' => 'cla', 'ClCG06G018110' => 'cla', 'ClCG07G008800' => 'cla', 'ClCG07G015330' => 'cla', 'COL.COLO4_13698' => 'col', 'COL.COLO4_16659' => 'col', 'COL.COLO4_21986' => 'col', 'COL.COLO4_24049' => 'col', 'COL.COLO4_29061' => 'col', 'COL.COLO4_29075' => 'col', 'COL.COLO4_30094' => 'col', 'Cpa.g.c33689' => 'cpa', 'Cpa.g.sc108.39' => 'cpa', 'Cpa.g.sc108.41' => 'cpa', 'Cpa.g.sc1163.1' => 'cpa', 'Cpa.g.sc4.155' => 'cpa', 'Cpa.g.sc6.194' => 'cpa', 'CsaV3_1G000340' => 'csa', 'CsaV3_1G001400' => 'csa', 'CsaV3_4G002220' => 'csa', 'CsaV3_4G005370' => 'csa', 'CSS0007487' => 'camsi', 'CSS0008066' => 'camsi', 'CSS0009120' => 'camsi', 'CSS0015512' => 'camsi', 'CSS0022409' => 'camsi', 'CSS0025358' => 'camsi', 'CSS0044547' => 'camsi', 'DCAR_013057' => 'dca', 'DCAR_015058' => 'dca', 'DCAR_016027' => 'dca', 'DCAR_017327' => 'dca', 'DCAR_020743' => 'dca', 'DCAR_026157' => 'dca', 'DCAR_032339' => 'dca', 'DCAR_032340' => 'dca', 'Dinv11200' => 'din', 'Dinv11201' => 'din', 'Dinv20631' => 'din', 'Dinv23182' => 'din', 'Dinv33466' => 'din', 'Dinv33583' => 'din', 'Dinv38565' => 'din', 'Duzib068G0200' => 'dzi', 'Duzib147G0132' => 'dzi', 'Duzib147G0635' => 'dzi', 'Duzib205G1670' => 'dzi', 'Duzib251G0606' => 'dzi', 'ECA232G3336' => 'eca', 'ECA232G3763' => 'eca', 'ECA232G4845' => 'eca', 'ECA234G1607' => 'eca', 'ECA246G0932' => 'eca', 'ECA247G0781' => 'eca', 'ECA247G1932' => 'eca', 'ECA247G2079' => 'eca', 'ECA247G3338' => 'eca', 'ECA247G4115' => 'eca', 'EL10Ac3g06552' => 'bvu', 'EL10Ac5g10721' => 'bvu', 'EL10Ac5g10722' => 'bvu', 'EL10Ac5g10723' => 'bvu', 'EL10Ac5g11361' => 'bvu', 'EL10Ac6g13553' => 'bvu', 'EL10As8g23872' => 'bvu', 'Eucgr.B00250' => 'egr', 'Eucgr.B00251' => 'egr', 'Eucgr.B03533' => 'egr', 'Eucgr.I02381' => 'egr', 'Eucgr.K02700' => 'egr', 'FAN02G0174' => 'fan', 'FAN02G3146' => 'fan', 'FAN04G1672' => 'fan', 'FAN04G2273' => 'fan', 'FAN05G2791' => 'fan', 'FAN05G4035' => 'fan', 'FAN07G0834' => 'fan', 'FAN08G1198' => 'fan', 'FAN09G4182' => 'fan', 'FAN12G0496' => 'fan', 'FAN13G1027' => 'fan', 'FAN13G2951' => 'fan', 'FAN14G0705' => 'fan', 'FAN14G0720' => 'fan', 'FAN17G0201' => 'fan', 'FAN17G2665' => 'fan', 'FAN18G1456' => 'fan', 'FAN18G1525' => 'fan', 'FAN18G3500' => 'fan', 'FAN28G2670' => 'fan', 'FvH4_1g12391' => 'fve', 'FvH4_4g23220' => 'fve', 'FvH4_5g08810' => 'fve', 'FvH4_5g28960' => 'fve', 'FvH4_6g42820' => 'fve', 'FvH4_6g51110' => 'fve', 'Glyma.02G051802' => 'gma', 'Glyma.04G185300' => 'gma', 'Glyma.05G202900' => 'gma', 'Glyma.08G010300' => 'gma', 'Glyma.16G131900' => 'gma', 'Glyma.17G087900' => 'gma', 'Gohir.A07G048600' => 'ghi', 'Gohir.A11G179000' => 'ghi', 'Gohir.A12G140900' => 'ghi', 'Gohir.A12G140950' => 'ghi', 'Gohir.A12G191700' => 'ghi', 'Gohir.A13G086300' => 'ghi', 'Gohir.D07G052900' => 'ghi', 'Gohir.D11G186600' => 'ghi', 'Gohir.D12G145575' => 'ghi', 'Gohir.D12G145650' => 'ghi', 'Gohir.D12G145725' => 'ghi', 'Gohir.D12G194050' => 'ghi', 'Gohir.D13G091800' => 'ghi', 'Gorai.001G055900' => 'gra', 'Gorai.007G198400' => 'gra', 'Gorai.008G157000' => 'gra', 'Gorai.008G157100' => 'gra', 'Gorai.008G208700' => 'gra', 'Gorai.010G138700' => 'gra', 'GSVIVG01000977001' => 'vvi', 'GSVIVG01007708001' => 'vvi', 'GSVIVG01008587001' => 'vvi', 'GSVIVG01018849001' => 'vvi', 'GSVIVG01032432001' => 'vvi', 'HanXRQChr02g0034131' => 'han', 'HanXRQChr02g0035981' => 'han', 'HanXRQChr02g0035991' => 'han', 'HanXRQChr05g0155611' => 'han', 'HanXRQChr05g0155621' => 'han', 'HanXRQChr08g0236501' => 'han', 'HanXRQChr09g0261321' => 'han', 'HanXRQChr09g0272081' => 'han', 'HanXRQChr10g0310741' => 'han', 'HanXRQChr11g0325591' => 'han', 'HanXRQChr12g0385691' => 'han', 'HanXRQChr13g0387801' => 'han', 'HanXRQChr15g0463011' => 'han', 'Haze_03826' => 'cav', 'Haze_03827' => 'cav', 'Haze_07183' => 'cav', 'Haze_07537' => 'cav', 'Haze_07539' => 'cav', 'Haze_12461' => 'cav', 'Haze_16115' => 'cav', 'Haze_16808' => 'cav', 'Haze_18531' => 'cav', 'Hma1.2p1_0046F.1_g026700' => 'hma', 'Hma1.2p1_0046F.1_g026710' => 'hma', 'Hma1.2p1_0168F.1_g074340' => 'hma', 'Hma1.2p1_0266F.1_g107030' => 'hma', 'Hma1.2p1_0266F.1_g107060' => 'hma', 'Hma1.2p1_0275F.1_g110510' => 'hma', 'Hma1.2p1_0592F.1_g185490' => 'hma', 'Hma1.2p1_0592F.1_g185500' => 'hma', 'Hma1.2p1_0592F.1_g185510' => 'hma', 'Hma1.2p1_0592F.1_g185520' => 'hma', 'Hma1.2p1_0592F.1_g185530' => 'hma', 'Hma1.2p1_0818F.1_g223450' => 'hma', 'HPP92_009708' => 'vpl', 'HPP92_009793' => 'vpl', 'HPP92_009796' => 'vpl', 'HPP92_009797' => 'vpl', 'HPP92_014940' => 'vpl', 'HPP92_014988' => 'vpl', 'Hund02463' => 'sun', 'Hund02760' => 'sun', 'Hund05071' => 'sun', 'Hund10108' => 'sun', 'Hund11204' => 'sun', 'Hund14016' => 'sun', 'Hund16464' => 'sun', 'Lalb_Chr09g0333391' => 'lal', 'Lalb_Chr11g0070461' => 'lal', 'Lalb_Chr12g0201671' => 'lal', 'Lalb_Chr13g0297161' => 'lal', 'Lj1g0002823' => 'lja', 'Lj3C1074T6' => 'lonja', 'Lj4A212T28' => 'lonja', 'Lj4g0005516' => 'lja', 'Lj4g0013705' => 'lja', 'Lj4g0027865' => 'lja', 'Lj5C92G16' => 'lonja', 'Lj5C92T12' => 'lonja', 'Lj7C596T3' => 'lonja', 'Lj9A446G59' => 'lonja', 'Lj9A482G21' => 'lonja', 'Lsat_1_v5_gn_1_28261' => 'lsa', 'Lsat_1_v5_gn_1_28281' => 'lsa', 'Lsat_1_v5_gn_1_32721' => 'lsa', 'Lsat_1_v5_gn_4_151760' => 'lsa', 'Lsat_1_v5_gn_4_2120' => 'lsa', 'Lsat_1_v5_gn_4_75761' => 'lsa', 'Lsat_1_v5_gn_5_10920' => 'lsa', 'Manes.02G099900' => 'mes', 'Manes.11G096200' => 'mes', 'Manes.12G007200' => 'mes', 'Manes.14G048300' => 'mes', 'Manes.17G114700' => 'mes', 'Mapoly0002s0070' => 'mpo', 'Mapoly0029s0099' => 'mpo', 'MBI07_g24742_MAGBIO' => 'mbi', 'MBI10_g27988_MAGBIO' => 'mbi', 'MBI11_g13057_MAGBIO' => 'mbi', 'MD02G1137200' => 'mdo', 'MD06G1137200' => 'mdo', 'MD07G1122300' => 'mdo', 'MD09G1078200' => 'mdo', 'MD13G1123700' => 'mdo', 'MD14G1151900' => 'mdo', 'MD17G1030900' => 'mdo', 'MD17G1068200' => 'mdo', 'MD17G1068600' => 'mdo', 'Medtr3g077540' => 'mtr', 'Medtr4g105530' => 'mtr', 'Medtr8g076580' => 'mtr', 'Medtr8g076590' => 'mtr', 'Medtr8g096410' => 'mtr', 'MELO3C016411.2' => 'cme', 'MELO3C017780.2' => 'cme', 'MELO3C022560.2' => 'cme', 'MELO3C026187.2' => 'cme', 'MELO3C026286.2' => 'cme', 'MELO3C032854.2' => 'cme', 'Migut.H02495' => 'egut', 'Migut.I00561' => 'egut', 'Migut.K01015' => 'egut', 'Migut.K01016' => 'egut', 'Migut.L00743' => 'egut', 'Migut.L00744' => 'egut', 'Migut.L00746' => 'egut', 'Migut.L00798' => 'egut', 'Migut.L00799' => 'egut', 'Migut.N02096' => 'egut', 'MSTRG.11259' => 'ama', 'MSTRG.23142' => 'ama', 'MSTRG.2499' => 'ama', 'Nitab4.5_0000003g0730' => 'nta', 'Nitab4.5_0000137g0020' => 'nta', 'Nitab4.5_0000721g0210' => 'nta', 'Nitab4.5_0000723g0050' => 'nta', 'Nitab4.5_0000913g0070' => 'nta', 'Nitab4.5_0001332g0040' => 'nta', 'Nitab4.5_0001771g0050' => 'nta', 'Nitab4.5_0001918g0050' => 'nta', 'Nitab4.5_0002686g0030' => 'nta', 'Nitab4.5_0003156g0020' => 'nta', 'Nitab4.5_0003383g0040' => 'nta', 'Nitab4.5_0003918g0010' => 'nta', 'Nitab4.5_0006760g0010' => 'nta', 'Nn1g05981' => 'nnu', 'Nn1g06288' => 'nnu', 'Nn3g16371' => 'nnu', 'Nn3g16786' => 'nnu', 'Nn4g22232' => 'nnu', 'Oeu005144.1' => 'oeu', 'Oeu005145.1' => 'oeu', 'Oeu011348.1' => 'oeu', 'Oeu016415.1' => 'oeu', 'Oeu023501.1' => 'oeu', 'Oeu044473.1' => 'oeu', 'Oeu048892.2' => 'oeu', 'Os01g0549200' => 'osa', 'Os02g0469300' => 'osa', 'Os04g0311100' => 'osa', 'Os06g0474900' => 'osa', 'Os10g0181700' => 'osa', 'Os11g0454800' => 'osa', 'Peaxi162Scf00037g00714' => 'pax', 'Peaxi162Scf00084g01217' => 'pax', 'Peaxi162Scf00257g00217' => 'pax', 'Peaxi162Scf00516g00215' => 'pax', 'Peaxi162Scf00689g00123' => 'pax', 'PGR044G2719' => 'pgr', 'PGR083G1360' => 'pgr', 'PGR102G2849' => 'pgr', 'PGR119G2534' => 'pgr', 'PGSC0003DMG400003538' => 'stu', 'PGSC0003DMG400028138' => 'stu', 'PGSC0003DMG400031732' => 'stu', 'PGSC0003DMG400038165' => 'stu', 'Phvul.002G284600' => 'pvu', 'Phvul.003G258200' => 'pvu', 'Phvul.009G176500' => 'pvu', 'Potri.003G167201' => 'ptr', 'Potri.005G118400' => 'ptr', 'Potri.012G089000' => 'ptr', 'Potri.012G102800' => 'ptr', 'Potri.015G079400' => 'ptr', 'Potri.015G100900' => 'ptr', 'Pp3c14_9810' => 'ppa', 'Pp3c15_10450' => 'ppa', 'Pp3c20_19150' => 'ppa', 'Pp3c23_12740' => 'ppa', 'Pp3c23_6310' => 'ppa', 'Pp3c24_3720' => 'ppa', 'Pp3c27_2580' => 'ppa', 'Pp3c9_8990' => 'ppa', 'PRCOL_00002854' => 'pco', 'Prupe.1G221200' => 'ppe', 'Prupe.3G289000' => 'ppe', 'Prupe.5G147000' => 'ppe', 'Prupe.6G157300' => 'ppe', 'Prupe.7G163400' => 'ppe', 'Psat0s2177g0040' => 'psa', 'Psat3g174760' => 'psa', 'Psat3g192160' => 'psa', 'Psat4g058520' => 'psa', 'Psat4g096840' => 'psa', 'Psat7g037320' => 'psa', 'PSO017G1274' => 'pso', 'PSO017G5166' => 'pso', 'PSO063G4558' => 'pso', 'PSO170G4458' => 'pso', 'PSO170G5005' => 'pso', 'PSO210G6156' => 'pso', 'PSO210G6635' => 'pso', 'PSO210G7397' => 'pso', 'PSO210G7700' => 'pso', 'PSO455G0035' => 'pso', 'PSO455G0180' => 'pso', 'PSO478G4515' => 'pso', 'PSO832G1305' => 'pso', 'PSO832G3489' => 'pso', 'QL02p075247' => 'qlo', 'QL03p051148' => 'qlo', 'QL05p010313' => 'qlo', 'QL06p034627' => 'qlo', 'QL10p001889' => 'qlo', 'QL10p010846' => 'qlo', 'RcHm_v2.0_Chr1g0350621' => 'rch', 'RcHm_v2.0_Chr1g0350641' => 'rch', 'RcHm_v2.0_Chr2g0092891' => 'rch', 'RcHm_v2.0_Chr2g0100251' => 'rch', 'RcHm_v2.0_Chr2g0158661' => 'rch', 'RcHm_v2.0_Chr2g0172741' => 'rch', 'RcHm_v2.0_Chr4g0429571' => 'rch', 'RcHm_v2.0_Chr5g0042471' => 'rch', 'RcHm_v2.0_Chr7g0189451' => 'rch', 'Rhsim08G0052000' => 'rsi', 'Rhsim08G0174400' => 'rsi', 'Rhsim08G0193200' => 'rsi', 'Rhsim10G0214800' => 'rsi', 'Rhsim10G0214900' => 'rsi', 'Rhsim10G0215000' => 'rsi', 'Rhsim12G0022900' => 'rsi', 'Rhsim12G0177500' => 'rsi', 'Rhsim12G0177700' => 'rsi', 'Sabra03G0122600' => 'sbr', 'Sabra05G0097400' => 'sbr', 'Sabra12G0064100' => 'sbr', 'Sabra15G0121300' => 'sbr', 'SalBow2G0642' => 'sbo', 'SalBow5G2667' => 'sbo', 'SalBow5G4873' => 'sbo', 'SalBow8G2395' => 'sbo', 'Sc03g0003290' => 'sci', 'Sc10g0010130' => 'sci', 'Sc22g0003650' => 'sci', 'Sed0001603' => 'sed', 'Sed0004259' => 'sed', 'Sed0006789' => 'sed', 'Sed0011838' => 'sed', 'Sed0012964' => 'sed', 'Sed0016383' => 'sed', 'Sed0019010' => 'sed', 'Sed0020188' => 'sed', 'SEGI_04702' => 'sgi', 'SEGI_17231' => 'sgi', 'SEGI_18877' => 'sgi', 'SEGI_25196' => 'sgi', 'SEGI_25515' => 'sgi', 'SEGI_28445' => 'sgi', 'SEGI_37452' => 'sgi', 'SGA_v2.0_scaffold188G40336' => 'sas', 'SGA_v2.0_scaffold228G43247' => 'sas', 'SGA_v2.0_scaffold280G46853' => 'sas', 'SGA_v2.0_scaffold34G13808' => 'sas', 'SGA_v2.0_scaffold40G15576' => 'sas', 'SGA_v2.0_scaffold611G53188' => 'sas', 'SGA_v2.0_scaffold78G25461' => 'sas', 'SGA_v2.0_scaffold90G27888' => 'sas', 'SHI08601' => 'shi', 'SHI08606' => 'shi', 'SHI17117' => 'shi', 'SHI17119' => 'shi', 'SMO118G0201' => 'smo', 'SMO169G0247' => 'smo', 'SMO176G0006' => 'smo', 'SMO176G0015' => 'smo', 'SMO202G0006' => 'smo', 'SMO240G0050' => 'smo', 'SMO286G0009' => 'smo', 'SMO338G0033' => 'smo', 'SMO356G0533' => 'smo', 'SMO364G0382' => 'smo', 'SMO367G0166' => 'smo', 'SMO367G1098' => 'smo', 'Solyc01g009920.3' => 'sly', 'Solyc01g099300.3' => 'sly', 'Solyc02g084700.3' => 'sly', 'Solyc03g097520.3' => 'sly', 'Solyc06g071580.3' => 'sly', 'Solyc10g081760.3' => 'sly', 'Sopen01g005480' => 'spe', 'Sopen01g042850' => 'spe', 'Sopen02g029370' => 'spe', 'Sopen03g028280' => 'spe', 'Sopen06g027870' => 'spe', 'Sopen10g032270' => 'spe', 'Sp5g18180' => 'spa', 'Sp6g12880' => 'spa', 'Sp6g30850' => 'spa', 'Sp7g22960' => 'spa', 'Sp7g34010' => 'spa', 'SpUn1326_0010' => 'spa', 'TAR371G0242' => 'tar', 'TAR622G0638' => 'tar', 'TAR628G1548' => 'tar', 'TAR629G1079' => 'tar', 'TAR629G3413' => 'tar', 'THA.LOC104804249' => 'tha', 'THA.LOC104808315' => 'tha', 'THA.LOC104809238' => 'tha', 'THA.LOC104825484' => 'tha', 'Thecc.01G025500' => 'tca', 'Thecc.03G015800' => 'tca', 'Thecc.03G018000' => 'tca', 'Thecc.03G134800' => 'tca', 'Thecc.04G014700' => 'tca', 'Thhalv10006991m.g' => 'esa', 'Thhalv10012707m.g' => 'esa', 'Thhalv10015739m.g' => 'esa', 'Thhalv10024553m.g' => 'esa', 'Thhalv10024673m.g' => 'esa', 'Thhalv10029187m.g' => 'esa', 'TPR.G12971' => 'tpr', 'TPR.G29396' => 'tpr', 'TPR.G33376' => 'tpr', 'TPR.G35508' => 'tpr', 'TPR.G35516' => 'tpr', 'TPR.G37317' => 'tpr', 'TPR.G37389' => 'tpr', 'TPR.G37523' => 'tpr', 'TPR.G559' => 'tpr', 'TWI14G0070' => 'twi', 'TWI14G0729' => 'twi', 'TWI18G0596' => 'twi', 'TWI39G0780' => 'twi', 'TWI39G0850' => 'twi', 'TWI73G1052' => 'twi', 'unitig_52.g17485' => 'ugi', 'unitig_61.g26355' => 'ugi', 'vmacro01040' => 'vma', 'vmacro16731' => 'vma', 'vmacro18270' => 'vma', 'vmacro19142' => 'vma', 'vmacro19407' => 'vma', 'vmacro19408' => 'vma', 'vmacro21899' => 'vma', 'vmacro21900' => 'vma', 'vmacro21901' => 'vma', 'VMungo0251G0490' => 'vmu', 'VMungo0251G1748' => 'vmu', 'VMungo1309G0421' => 'vmu', 'Zm00001eb086500' => 'zma', 'Zm00001eb150680' => 'zma', 'Zm00001eb162330' => 'zma', 'Zm00001eb203130' => 'zma', 'Zm00001eb369480' => 'zma', 'Zm00001eb382340' => 'zma', 'Zm00001eb416360' => 'zma' ), 'gf_id' => 'HOM05D000902', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000902' ), 'data_identifier' => 'HOM05D000902', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000902', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '663', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02470' => 'bna', 'A01p16260' => 'bna', 'A02p01680' => 'bna', 'A03p16600' => 'bna', 'A03p55660' => 'bna', 'A03p64160' => 'bna', 'A03p64170' => 'bna', 'A08p31900' => 'bna', 'A09p59530' => 'bna', 'A10p08230' => 'bna', 'A10p25090' => 'bna', 'Aa31LG3G7100' => 'aar', 'Aa31LG3G7110' => 'aar', 'Aa31LG6G13160' => 'aar', 'Aa31LG7G10770' => 'aar', 'Aa31LG7G3830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2723' => 'aag', 'Actinidia08045' => 'ach', 'Actinidia08888' => 'ach', 'Actinidia18333' => 'ach', 'Actinidia19334' => 'ach', 'Actinidia25552' => 'ach', 'Actinidia26089' => 'ach', 'Actinidia30615' => 'ach', 'Actinidia30616' => 'ach', 'Actinidia33083' => 'ach', 'Actinidia35762' => 'ach', 'Ah.02g110620' => 'amhyb', 'Ah.11g046390' => 'amhyb', 'AL1G31670' => 'aly', 'AL6G23730' => 'aly', 'AL7G14740' => 'aly', 'AL7G14750' => 'aly', 'AL7G14760' => 'aly', 'AL7G28220' => 'aly', 'AL8G24940' => 'aly', 'Aqoxy3G01665' => 'aox', 'Aqoxy3G02853' => 'aox', 'Aqoxy5G01513' => 'aox', 'Aqoxy5G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8SKA4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ75LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKDA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0LJZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7REX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZP4YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWX7I5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2QKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS0L9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPCD8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q161UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC7XCF' => 'arhy', 'AT1G19100' => 'ath', 'AT4G24970' => 'ath', 'AT4G36270' => 'ath', 'AT4G36280' => 'ath', 'AT4G36290' => 'ath', 'AT5G13130' => 'ath', 'AT5G50780' => 'ath', 'ATR0582G266' => 'atr', 'ATR0661G195' => 'atr', 'ATR1152G031' => 'atr', 'Atru.chr11.2382' => 'acertr', 'Atru.chr12.2337' => 'acertr', 'Atru.chr3.744' => 'acertr', 'Atru.chr6.1870' => 'acertr', 'Atru.chr9.2515' => 'acertr', 'AUR62004120' => 'cqu', 'AUR62005667' => 'cqu', 'AUR62007634' => 'cqu', 'AUR62008186' => 'cqu', 'AUR62008187' => 'cqu', 'AUR62008188' => 'cqu', 'AUR62027954' => 'cqu', 'AUR62028766' => 'cqu', 'AUR62028767' => 'cqu', 'AUR62028768' => 'cqu', 'AUR62028886' => 'cqu', 'AUR62029563' => 'cqu', 'AUR62038832' => 'cqu', 'BcaB01g04149' => 'bca', 'BcaB03g12940' => 'bca', 'BcaB03g13090' => 'bca', 'BcaB03g14466' => 'bca', 'BcaB05g24035' => 'bca', 'BcaC01g06050' => 'bca', 'BcaC04g19148' => 'bca', 'BcaC04g20761' => 'bca', 'BcaC06g32845' => 'bca', 'BcaC07g41274' => 'bca', 'BcaC09g50827' => 'bca', 'BcaNung00741' => 'bca', 'BcaNung00742' => 'bca', 'BcaNung01859' => 'bca', 'BcaNung03985' => 'bca', 'BcaNung03989' => 'bca', 'BcaNung05661' => 'bca', 'BolC1t00257H' => 'bol', 'BolC1t01956H' => 'bol', 'BolC2t06534H' => 'bol', 'BolC3t14334H' => 'bol', 'BolC5t30451H' => 'bol', 'BolC7t45880H' => 'bol', 'BolC7t46586H' => 'bol', 'BolC8t49301H' => 'bol', 'BolC8t51837H' => 'bol', 'BolC9t56822H' => 'bol', 'BolC9t59235H' => 'bol', 'BraA01t00234Z' => 'bra', 'BraA01t01563Z' => 'bra', 'BraA02t05147Z' => 'bra', 'BraA03t10947Z' => 'bra', 'BraA03t14633Z' => 'bra', 'BraA08t35112Z' => 'bra', 'BraA09t41330Z' => 'bra', 'BraA10t44570Z' => 'bra', 'C01p02670' => 'bna', 'C01p20260' => 'bna', 'C02p05890' => 'bna', 'C03p19530' => 'bna', 'C05p17470' => 'bna', 'C07p53900' => 'bna', 'C07p61630' => 'bna', 'C08p16800' => 'bna', 'C08p42810' => 'bna', 'C09p39480' => 'bna', 'C09p63980' => 'bna', 'CAN.G1001.7' => 'can', 'CAN.G1034.55' => 'can', 'CAN.G143.7' => 'can', 'CAN.G3340.1' => 'can', 'CAN.G358.19' => 'can', 'CAN.G373.2' => 'can', 'CAN.G674.16' => 'can', 'CAN.G674.17' => 'can', 'CAN.G674.18' => 'can', 'CAN.G732.2' => 'can', 'CAN.G732.3' => 'can', 'CAN.G993.39' => 'can', 'CANSAT01G2052' => 'cansat', 'CANSAT80G0070' => 'cansat', 'CANSAT80G0483' => 'cansat', 'CANSAT80G0625' => 'cansat', 'CARHR019690' => 'chi', 'CARHR080280' => 'chi', 'CARHR152750' => 'chi', 'CARHR152760' => 'chi', 'CARHR152770' => 'chi', 'CARHR200340' => 'chi', 'CARHR232370' => 'chi', 'CARHR244670' => 'chi', 'CARHR244680' => 'chi', 'CARHR257520' => 'chi', 'Carub.0001s1872' => 'cru', 'Carub.0006s1130' => 'cru', 'Carub.0007s0396' => 'cru', 'Carub.0007s0397' => 'cru', 'Carub.0007s1608' => 'cru', 'Carub.0008s1068' => 'cru', 'Carub.0008s1077' => 'cru', 'Ca_16158_v3' => 'car', 'Ca_17571_v3' => 'car', 'Ca_21936_v3' => 'car', 'Ca_22350_v3' => 'car', 'CBR_g22445' => 'cbr', 'CBR_g26290' => 'cbr', 'Cc04_g09610' => 'ccan', 'Cc04_g12280' => 'ccan', 'Cc07_g10230' => 'ccan', 'CDE02G0093' => 'cde', 'CDE02G0701' => 'cde', 'CDE04G1050' => 'cde', 'CDE05G1833' => 'cde', 'CDE05G3058' => 'cde', 'CDE05G3380' => 'cde', 'CDE06G0536' => 'cde', 'Cfa006923' => 'cfa', 'Cfa009402' => 'cfa', 'Cfa018751' => 'cfa', 'Cfa019164' => 'cfa', 'Cfa022935' => 'cfa', 'Ciclev10019081m.g' => 'ccl', 'Ciclev10025076m.g' => 'ccl', 'Ciclev10030712m.g' => 'ccl', 'Ciclev10033760m.g' => 'ccl', 'CiPaw.05G105600' => 'cil', 'CiPaw.08G136700' => 'cil', 'CiPaw.11G003900' => 'cil', 'CiPaw.11G023700' => 'cil', 'CiPaw.12G003700' => 'cil', 'ClCG06G017100' => 'cla', 'ClCG06G018110' => 'cla', 'ClCG07G008800' => 'cla', 'ClCG07G015330' => 'cla', 'COL.COLO4_13698' => 'col', 'COL.COLO4_16659' => 'col', 'COL.COLO4_21986' => 'col', 'COL.COLO4_24049' => 'col', 'COL.COLO4_29061' => 'col', 'COL.COLO4_29075' => 'col', 'COL.COLO4_30094' => 'col', 'Cpa.g.c33689' => 'cpa', 'Cpa.g.sc108.39' => 'cpa', 'Cpa.g.sc108.41' => 'cpa', 'Cpa.g.sc1163.1' => 'cpa', 'Cpa.g.sc4.155' => 'cpa', 'Cpa.g.sc6.194' => 'cpa', 'CsaV3_1G000340' => 'csa', 'CsaV3_1G001400' => 'csa', 'CsaV3_4G002220' => 'csa', 'CsaV3_4G005370' => 'csa', 'CSS0007487' => 'camsi', 'CSS0008066' => 'camsi', 'CSS0009120' => 'camsi', 'CSS0015512' => 'camsi', 'CSS0022409' => 'camsi', 'CSS0025358' => 'camsi', 'CSS0044547' => 'camsi', 'DCAR_013057' => 'dca', 'DCAR_015058' => 'dca', 'DCAR_016027' => 'dca', 'DCAR_017327' => 'dca', 'DCAR_020743' => 'dca', 'DCAR_026157' => 'dca', 'DCAR_032339' => 'dca', 'DCAR_032340' => 'dca', 'Dinv11200' => 'din', 'Dinv11201' => 'din', 'Dinv20631' => 'din', 'Dinv23182' => 'din', 'Dinv33466' => 'din', 'Dinv33583' => 'din', 'Dinv38565' => 'din', 'Duzib068G0200' => 'dzi', 'Duzib147G0132' => 'dzi', 'Duzib147G0635' => 'dzi', 'Duzib205G1670' => 'dzi', 'Duzib251G0606' => 'dzi', 'ECA232G3336' => 'eca', 'ECA232G3763' => 'eca', 'ECA232G4845' => 'eca', 'ECA234G1607' => 'eca', 'ECA246G0932' => 'eca', 'ECA247G0781' => 'eca', 'ECA247G1932' => 'eca', 'ECA247G2079' => 'eca', 'ECA247G3338' => 'eca', 'ECA247G4115' => 'eca', 'EL10Ac3g06552' => 'bvu', 'EL10Ac5g10721' => 'bvu', 'EL10Ac5g10722' => 'bvu', 'EL10Ac5g10723' => 'bvu', 'EL10Ac5g11361' => 'bvu', 'EL10Ac6g13553' => 'bvu', 'EL10As8g23872' => 'bvu', 'Eucgr.B00250' => 'egr', 'Eucgr.B00251' => 'egr', 'Eucgr.B03533' => 'egr', 'Eucgr.I02381' => 'egr', 'Eucgr.K02700' => 'egr', 'FAN02G0174' => 'fan', 'FAN02G3146' => 'fan', 'FAN04G1672' => 'fan', 'FAN04G2273' => 'fan', 'FAN05G2791' => 'fan', 'FAN05G4035' => 'fan', 'FAN07G0834' => 'fan', 'FAN08G1198' => 'fan', 'FAN09G4182' => 'fan', 'FAN12G0496' => 'fan', 'FAN13G1027' => 'fan', 'FAN13G2951' => 'fan', 'FAN14G0705' => 'fan', 'FAN14G0720' => 'fan', 'FAN17G0201' => 'fan', 'FAN17G2665' => 'fan', 'FAN18G1456' => 'fan', 'FAN18G1525' => 'fan', 'FAN18G3500' => 'fan', 'FAN28G2670' => 'fan', 'FvH4_1g12391' => 'fve', 'FvH4_4g23220' => 'fve', 'FvH4_5g08810' => 'fve', 'FvH4_5g28960' => 'fve', 'FvH4_6g42820' => 'fve', 'FvH4_6g51110' => 'fve', 'Glyma.02G051802' => 'gma', 'Glyma.04G185300' => 'gma', 'Glyma.05G202900' => 'gma', 'Glyma.08G010300' => 'gma', 'Glyma.16G131900' => 'gma', 'Glyma.17G087900' => 'gma', 'Gohir.A07G048600' => 'ghi', 'Gohir.A11G179000' => 'ghi', 'Gohir.A12G140900' => 'ghi', 'Gohir.A12G140950' => 'ghi', 'Gohir.A12G191700' => 'ghi', 'Gohir.A13G086300' => 'ghi', 'Gohir.D07G052900' => 'ghi', 'Gohir.D11G186600' => 'ghi', 'Gohir.D12G145575' => 'ghi', 'Gohir.D12G145650' => 'ghi', 'Gohir.D12G145725' => 'ghi', 'Gohir.D12G194050' => 'ghi', 'Gohir.D13G091800' => 'ghi', 'Gorai.001G055900' => 'gra', 'Gorai.007G198400' => 'gra', 'Gorai.008G157000' => 'gra', 'Gorai.008G157100' => 'gra', 'Gorai.008G208700' => 'gra', 'Gorai.010G138700' => 'gra', 'GSVIVG01000977001' => 'vvi', 'GSVIVG01007708001' => 'vvi', 'GSVIVG01008587001' => 'vvi', 'GSVIVG01018849001' => 'vvi', 'GSVIVG01032432001' => 'vvi', 'HanXRQChr02g0034131' => 'han', 'HanXRQChr02g0035981' => 'han', 'HanXRQChr02g0035991' => 'han', 'HanXRQChr05g0155611' => 'han', 'HanXRQChr05g0155621' => 'han', 'HanXRQChr08g0236501' => 'han', 'HanXRQChr09g0261321' => 'han', 'HanXRQChr09g0272081' => 'han', 'HanXRQChr10g0310741' => 'han', 'HanXRQChr11g0325591' => 'han', 'HanXRQChr12g0385691' => 'han', 'HanXRQChr13g0387801' => 'han', 'HanXRQChr15g0463011' => 'han', 'Haze_03826' => 'cav', 'Haze_03827' => 'cav', 'Haze_07183' => 'cav', 'Haze_07537' => 'cav', 'Haze_07539' => 'cav', 'Haze_12461' => 'cav', 'Haze_16115' => 'cav', 'Haze_16808' => 'cav', 'Haze_18531' => 'cav', 'Hma1.2p1_0046F.1_g026700' => 'hma', 'Hma1.2p1_0046F.1_g026710' => 'hma', 'Hma1.2p1_0168F.1_g074340' => 'hma', 'Hma1.2p1_0266F.1_g107030' => 'hma', 'Hma1.2p1_0266F.1_g107060' => 'hma', 'Hma1.2p1_0275F.1_g110510' => 'hma', 'Hma1.2p1_0592F.1_g185490' => 'hma', 'Hma1.2p1_0592F.1_g185500' => 'hma', 'Hma1.2p1_0592F.1_g185510' => 'hma', 'Hma1.2p1_0592F.1_g185520' => 'hma', 'Hma1.2p1_0592F.1_g185530' => 'hma', 'Hma1.2p1_0818F.1_g223450' => 'hma', 'HPP92_009708' => 'vpl', 'HPP92_009793' => 'vpl', 'HPP92_009796' => 'vpl', 'HPP92_009797' => 'vpl', 'HPP92_014940' => 'vpl', 'HPP92_014988' => 'vpl', 'Hund02463' => 'sun', 'Hund02760' => 'sun', 'Hund05071' => 'sun', 'Hund10108' => 'sun', 'Hund11204' => 'sun', 'Hund14016' => 'sun', 'Hund16464' => 'sun', 'Lalb_Chr09g0333391' => 'lal', 'Lalb_Chr11g0070461' => 'lal', 'Lalb_Chr12g0201671' => 'lal', 'Lalb_Chr13g0297161' => 'lal', 'Lj1g0002823' => 'lja', 'Lj3C1074T6' => 'lonja', 'Lj4A212T28' => 'lonja', 'Lj4g0005516' => 'lja', 'Lj4g0013705' => 'lja', 'Lj4g0027865' => 'lja', 'Lj5C92G16' => 'lonja', 'Lj5C92T12' => 'lonja', 'Lj7C596T3' => 'lonja', 'Lj9A446G59' => 'lonja', 'Lj9A482G21' => 'lonja', 'Lsat_1_v5_gn_1_28261' => 'lsa', 'Lsat_1_v5_gn_1_28281' => 'lsa', 'Lsat_1_v5_gn_1_32721' => 'lsa', 'Lsat_1_v5_gn_4_151760' => 'lsa', 'Lsat_1_v5_gn_4_2120' => 'lsa', 'Lsat_1_v5_gn_4_75761' => 'lsa', 'Lsat_1_v5_gn_5_10920' => 'lsa', 'Manes.02G099900' => 'mes', 'Manes.11G096200' => 'mes', 'Manes.12G007200' => 'mes', 'Manes.14G048300' => 'mes', 'Manes.17G114700' => 'mes', 'Mapoly0002s0070' => 'mpo', 'Mapoly0029s0099' => 'mpo', 'MBI07_g24742_MAGBIO' => 'mbi', 'MBI10_g27988_MAGBIO' => 'mbi', 'MBI11_g13057_MAGBIO' => 'mbi', 'MD02G1137200' => 'mdo', 'MD06G1137200' => 'mdo', 'MD07G1122300' => 'mdo', 'MD09G1078200' => 'mdo', 'MD13G1123700' => 'mdo', 'MD14G1151900' => 'mdo', 'MD17G1030900' => 'mdo', 'MD17G1068200' => 'mdo', 'MD17G1068600' => 'mdo', 'Medtr3g077540' => 'mtr', 'Medtr4g105530' => 'mtr', 'Medtr8g076580' => 'mtr', 'Medtr8g076590' => 'mtr', 'Medtr8g096410' => 'mtr', 'MELO3C016411.2' => 'cme', 'MELO3C017780.2' => 'cme', 'MELO3C022560.2' => 'cme', 'MELO3C026187.2' => 'cme', 'MELO3C026286.2' => 'cme', 'MELO3C032854.2' => 'cme', 'Migut.H02495' => 'egut', 'Migut.I00561' => 'egut', 'Migut.K01015' => 'egut', 'Migut.K01016' => 'egut', 'Migut.L00743' => 'egut', 'Migut.L00744' => 'egut', 'Migut.L00746' => 'egut', 'Migut.L00798' => 'egut', 'Migut.L00799' => 'egut', 'Migut.N02096' => 'egut', 'MSTRG.11259' => 'ama', 'MSTRG.23142' => 'ama', 'MSTRG.2499' => 'ama', 'Nitab4.5_0000003g0730' => 'nta', 'Nitab4.5_0000137g0020' => 'nta', 'Nitab4.5_0000721g0210' => 'nta', 'Nitab4.5_0000723g0050' => 'nta', 'Nitab4.5_0000913g0070' => 'nta', 'Nitab4.5_0001332g0040' => 'nta', 'Nitab4.5_0001771g0050' => 'nta', 'Nitab4.5_0001918g0050' => 'nta', 'Nitab4.5_0002686g0030' => 'nta', 'Nitab4.5_0003156g0020' => 'nta', 'Nitab4.5_0003383g0040' => 'nta', 'Nitab4.5_0003918g0010' => 'nta', 'Nitab4.5_0006760g0010' => 'nta', 'Nn1g05981' => 'nnu', 'Nn1g06288' => 'nnu', 'Nn3g16371' => 'nnu', 'Nn3g16786' => 'nnu', 'Nn4g22232' => 'nnu', 'Oeu005144.1' => 'oeu', 'Oeu005145.1' => 'oeu', 'Oeu011348.1' => 'oeu', 'Oeu016415.1' => 'oeu', 'Oeu023501.1' => 'oeu', 'Oeu044473.1' => 'oeu', 'Oeu048892.2' => 'oeu', 'Os01g0549200' => 'osa', 'Os02g0469300' => 'osa', 'Os04g0311100' => 'osa', 'Os06g0474900' => 'osa', 'Os10g0181700' => 'osa', 'Os11g0454800' => 'osa', 'Peaxi162Scf00037g00714' => 'pax', 'Peaxi162Scf00084g01217' => 'pax', 'Peaxi162Scf00257g00217' => 'pax', 'Peaxi162Scf00516g00215' => 'pax', 'Peaxi162Scf00689g00123' => 'pax', 'PGR044G2719' => 'pgr', 'PGR083G1360' => 'pgr', 'PGR102G2849' => 'pgr', 'PGR119G2534' => 'pgr', 'PGSC0003DMG400003538' => 'stu', 'PGSC0003DMG400028138' => 'stu', 'PGSC0003DMG400031732' => 'stu', 'PGSC0003DMG400038165' => 'stu', 'Phvul.002G284600' => 'pvu', 'Phvul.003G258200' => 'pvu', 'Phvul.009G176500' => 'pvu', 'Potri.003G167201' => 'ptr', 'Potri.005G118400' => 'ptr', 'Potri.012G089000' => 'ptr', 'Potri.012G102800' => 'ptr', 'Potri.015G079400' => 'ptr', 'Potri.015G100900' => 'ptr', 'Pp3c14_9810' => 'ppa', 'Pp3c15_10450' => 'ppa', 'Pp3c20_19150' => 'ppa', 'Pp3c23_12740' => 'ppa', 'Pp3c23_6310' => 'ppa', 'Pp3c24_3720' => 'ppa', 'Pp3c27_2580' => 'ppa', 'Pp3c9_8990' => 'ppa', 'PRCOL_00002854' => 'pco', 'Prupe.1G221200' => 'ppe', 'Prupe.3G289000' => 'ppe', 'Prupe.5G147000' => 'ppe', 'Prupe.6G157300' => 'ppe', 'Prupe.7G163400' => 'ppe', 'Psat0s2177g0040' => 'psa', 'Psat3g174760' => 'psa', 'Psat3g192160' => 'psa', 'Psat4g058520' => 'psa', 'Psat4g096840' => 'psa', 'Psat7g037320' => 'psa', 'PSO017G1274' => 'pso', 'PSO017G5166' => 'pso', 'PSO063G4558' => 'pso', 'PSO170G4458' => 'pso', 'PSO170G5005' => 'pso', 'PSO210G6156' => 'pso', 'PSO210G6635' => 'pso', 'PSO210G7397' => 'pso', 'PSO210G7700' => 'pso', 'PSO455G0035' => 'pso', 'PSO455G0180' => 'pso', 'PSO478G4515' => 'pso', 'PSO832G1305' => 'pso', 'PSO832G3489' => 'pso', 'QL02p075247' => 'qlo', 'QL03p051148' => 'qlo', 'QL05p010313' => 'qlo', 'QL06p034627' => 'qlo', 'QL10p001889' => 'qlo', 'QL10p010846' => 'qlo', 'RcHm_v2.0_Chr1g0350621' => 'rch', 'RcHm_v2.0_Chr1g0350641' => 'rch', 'RcHm_v2.0_Chr2g0092891' => 'rch', 'RcHm_v2.0_Chr2g0100251' => 'rch', 'RcHm_v2.0_Chr2g0158661' => 'rch', 'RcHm_v2.0_Chr2g0172741' => 'rch', 'RcHm_v2.0_Chr4g0429571' => 'rch', 'RcHm_v2.0_Chr5g0042471' => 'rch', 'RcHm_v2.0_Chr7g0189451' => 'rch', 'Rhsim08G0052000' => 'rsi', 'Rhsim08G0174400' => 'rsi', 'Rhsim08G0193200' => 'rsi', 'Rhsim10G0214800' => 'rsi', 'Rhsim10G0214900' => 'rsi', 'Rhsim10G0215000' => 'rsi', 'Rhsim12G0022900' => 'rsi', 'Rhsim12G0177500' => 'rsi', 'Rhsim12G0177700' => 'rsi', 'Sabra03G0122600' => 'sbr', 'Sabra05G0097400' => 'sbr', 'Sabra12G0064100' => 'sbr', 'Sabra15G0121300' => 'sbr', 'SalBow2G0642' => 'sbo', 'SalBow5G2667' => 'sbo', 'SalBow5G4873' => 'sbo', 'SalBow8G2395' => 'sbo', 'Sc03g0003290' => 'sci', 'Sc10g0010130' => 'sci', 'Sc22g0003650' => 'sci', 'Sed0001603' => 'sed', 'Sed0004259' => 'sed', 'Sed0006789' => 'sed', 'Sed0011838' => 'sed', 'Sed0012964' => 'sed', 'Sed0016383' => 'sed', 'Sed0019010' => 'sed', 'Sed0020188' => 'sed', 'SEGI_04702' => 'sgi', 'SEGI_17231' => 'sgi', 'SEGI_18877' => 'sgi', 'SEGI_25196' => 'sgi', 'SEGI_25515' => 'sgi', 'SEGI_28445' => 'sgi', 'SEGI_37452' => 'sgi', 'SGA_v2.0_scaffold188G40336' => 'sas', 'SGA_v2.0_scaffold228G43247' => 'sas', 'SGA_v2.0_scaffold280G46853' => 'sas', 'SGA_v2.0_scaffold34G13808' => 'sas', 'SGA_v2.0_scaffold40G15576' => 'sas', 'SGA_v2.0_scaffold611G53188' => 'sas', 'SGA_v2.0_scaffold78G25461' => 'sas', 'SGA_v2.0_scaffold90G27888' => 'sas', 'SHI08601' => 'shi', 'SHI08606' => 'shi', 'SHI17117' => 'shi', 'SHI17119' => 'shi', 'SMO118G0201' => 'smo', 'SMO169G0247' => 'smo', 'SMO176G0006' => 'smo', 'SMO176G0015' => 'smo', 'SMO202G0006' => 'smo', 'SMO240G0050' => 'smo', 'SMO286G0009' => 'smo', 'SMO338G0033' => 'smo', 'SMO356G0533' => 'smo', 'SMO364G0382' => 'smo', 'SMO367G0166' => 'smo', 'SMO367G1098' => 'smo', 'Solyc01g009920.3' => 'sly', 'Solyc01g099300.3' => 'sly', 'Solyc02g084700.3' => 'sly', 'Solyc03g097520.3' => 'sly', 'Solyc06g071580.3' => 'sly', 'Solyc10g081760.3' => 'sly', 'Sopen01g005480' => 'spe', 'Sopen01g042850' => 'spe', 'Sopen02g029370' => 'spe', 'Sopen03g028280' => 'spe', 'Sopen06g027870' => 'spe', 'Sopen10g032270' => 'spe', 'Sp5g18180' => 'spa', 'Sp6g12880' => 'spa', 'Sp6g30850' => 'spa', 'Sp7g22960' => 'spa', 'Sp7g34010' => 'spa', 'SpUn1326_0010' => 'spa', 'TAR371G0242' => 'tar', 'TAR622G0638' => 'tar', 'TAR628G1548' => 'tar', 'TAR629G1079' => 'tar', 'TAR629G3413' => 'tar', 'THA.LOC104804249' => 'tha', 'THA.LOC104808315' => 'tha', 'THA.LOC104809238' => 'tha', 'THA.LOC104825484' => 'tha', 'Thecc.01G025500' => 'tca', 'Thecc.03G015800' => 'tca', 'Thecc.03G018000' => 'tca', 'Thecc.03G134800' => 'tca', 'Thecc.04G014700' => 'tca', 'Thhalv10006991m.g' => 'esa', 'Thhalv10012707m.g' => 'esa', 'Thhalv10015739m.g' => 'esa', 'Thhalv10024553m.g' => 'esa', 'Thhalv10024673m.g' => 'esa', 'Thhalv10029187m.g' => 'esa', 'TPR.G12971' => 'tpr', 'TPR.G29396' => 'tpr', 'TPR.G33376' => 'tpr', 'TPR.G35508' => 'tpr', 'TPR.G35516' => 'tpr', 'TPR.G37317' => 'tpr', 'TPR.G37389' => 'tpr', 'TPR.G37523' => 'tpr', 'TPR.G559' => 'tpr', 'TWI14G0070' => 'twi', 'TWI14G0729' => 'twi', 'TWI18G0596' => 'twi', 'TWI39G0780' => 'twi', 'TWI39G0850' => 'twi', 'TWI73G1052' => 'twi', 'unitig_52.g17485' => 'ugi', 'unitig_61.g26355' => 'ugi', 'vmacro01040' => 'vma', 'vmacro16731' => 'vma', 'vmacro18270' => 'vma', 'vmacro19142' => 'vma', 'vmacro19407' => 'vma', 'vmacro19408' => 'vma', 'vmacro21899' => 'vma', 'vmacro21900' => 'vma', 'vmacro21901' => 'vma', 'VMungo0251G0490' => 'vmu', 'VMungo0251G1748' => 'vmu', 'VMungo1309G0421' => 'vmu', 'Zm00001eb086500' => 'zma', 'Zm00001eb150680' => 'zma', 'Zm00001eb162330' => 'zma', 'Zm00001eb203130' => 'zma', 'Zm00001eb369480' => 'zma', 'Zm00001eb382340' => 'zma', 'Zm00001eb416360' => 'zma' ) $gf_id = 'HOM05D000902' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000902' ) $data_identifier = 'HOM05D000902' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 13, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 10, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 6, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 9, 'hma' => (int) 12, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 4, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 6, 'ppa' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 6, 'rch' => (int) 9, 'rsi' => (int) 9, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 12, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 3, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416360' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000902', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '663', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02470' => 'bna', 'A01p16260' => 'bna', 'A02p01680' => 'bna', 'A03p16600' => 'bna', 'A03p55660' => 'bna', 'A03p64160' => 'bna', 'A03p64170' => 'bna', 'A08p31900' => 'bna', 'A09p59530' => 'bna', 'A10p08230' => 'bna', 'A10p25090' => 'bna', 'Aa31LG3G7100' => 'aar', 'Aa31LG3G7110' => 'aar', 'Aa31LG6G13160' => 'aar', 'Aa31LG7G10770' => 'aar', 'Aa31LG7G3830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2723' => 'aag', 'Actinidia08045' => 'ach', 'Actinidia08888' => 'ach', 'Actinidia18333' => 'ach', 'Actinidia19334' => 'ach', 'Actinidia25552' => 'ach', 'Actinidia26089' => 'ach', 'Actinidia30615' => 'ach', 'Actinidia30616' => 'ach', 'Actinidia33083' => 'ach', 'Actinidia35762' => 'ach', 'Ah.02g110620' => 'amhyb', 'Ah.11g046390' => 'amhyb', 'AL1G31670' => 'aly', 'AL6G23730' => 'aly', 'AL7G14740' => 'aly', 'AL7G14750' => 'aly', 'AL7G14760' => 'aly', 'AL7G28220' => 'aly', 'AL8G24940' => 'aly', 'Aqoxy3G01665' => 'aox', 'Aqoxy3G02853' => 'aox', 'Aqoxy5G01513' => 'aox', 'Aqoxy5G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8SKA4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ75LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKDA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0LJZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7REX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZP4YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWX7I5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2QKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS0L9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPCD8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q161UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC7XCF' => 'arhy', 'AT1G19100' => 'ath', 'AT4G24970' => 'ath', 'AT4G36270' => 'ath', 'AT4G36280' => 'ath', 'AT4G36290' => 'ath', 'AT5G13130' => 'ath', 'AT5G50780' => 'ath', 'ATR0582G266' => 'atr', 'ATR0661G195' => 'atr', 'ATR1152G031' => 'atr', 'Atru.chr11.2382' => 'acertr', 'Atru.chr12.2337' => 'acertr', 'Atru.chr3.744' => 'acertr', 'Atru.chr6.1870' => 'acertr', 'Atru.chr9.2515' => 'acertr', 'AUR62004120' => 'cqu', 'AUR62005667' => 'cqu', 'AUR62007634' => 'cqu', 'AUR62008186' => 'cqu', 'AUR62008187' => 'cqu', 'AUR62008188' => 'cqu', 'AUR62027954' => 'cqu', 'AUR62028766' => 'cqu', 'AUR62028767' => 'cqu', 'AUR62028768' => 'cqu', 'AUR62028886' => 'cqu', 'AUR62029563' => 'cqu', 'AUR62038832' => 'cqu', 'BcaB01g04149' => 'bca', 'BcaB03g12940' => 'bca', 'BcaB03g13090' => 'bca', 'BcaB03g14466' => 'bca', 'BcaB05g24035' => 'bca', 'BcaC01g06050' => 'bca', 'BcaC04g19148' => 'bca', 'BcaC04g20761' => 'bca', 'BcaC06g32845' => 'bca', 'BcaC07g41274' => 'bca', 'BcaC09g50827' => 'bca', 'BcaNung00741' => 'bca', 'BcaNung00742' => 'bca', 'BcaNung01859' => 'bca', 'BcaNung03985' => 'bca', 'BcaNung03989' => 'bca', 'BcaNung05661' => 'bca', 'BolC1t00257H' => 'bol', 'BolC1t01956H' => 'bol', 'BolC2t06534H' => 'bol', 'BolC3t14334H' => 'bol', 'BolC5t30451H' => 'bol', 'BolC7t45880H' => 'bol', 'BolC7t46586H' => 'bol', 'BolC8t49301H' => 'bol', 'BolC8t51837H' => 'bol', 'BolC9t56822H' => 'bol', 'BolC9t59235H' => 'bol', 'BraA01t00234Z' => 'bra', 'BraA01t01563Z' => 'bra', 'BraA02t05147Z' => 'bra', 'BraA03t10947Z' => 'bra', 'BraA03t14633Z' => 'bra', 'BraA08t35112Z' => 'bra', 'BraA09t41330Z' => 'bra', 'BraA10t44570Z' => 'bra', 'C01p02670' => 'bna', 'C01p20260' => 'bna', 'C02p05890' => 'bna', 'C03p19530' => 'bna', 'C05p17470' => 'bna', 'C07p53900' => 'bna', 'C07p61630' => 'bna', 'C08p16800' => 'bna', 'C08p42810' => 'bna', 'C09p39480' => 'bna', 'C09p63980' => 'bna', 'CAN.G1001.7' => 'can', 'CAN.G1034.55' => 'can', 'CAN.G143.7' => 'can', 'CAN.G3340.1' => 'can', 'CAN.G358.19' => 'can', 'CAN.G373.2' => 'can', 'CAN.G674.16' => 'can', 'CAN.G674.17' => 'can', 'CAN.G674.18' => 'can', 'CAN.G732.2' => 'can', 'CAN.G732.3' => 'can', 'CAN.G993.39' => 'can', 'CANSAT01G2052' => 'cansat', 'CANSAT80G0070' => 'cansat', 'CANSAT80G0483' => 'cansat', 'CANSAT80G0625' => 'cansat', 'CARHR019690' => 'chi', 'CARHR080280' => 'chi', 'CARHR152750' => 'chi', 'CARHR152760' => 'chi', 'CARHR152770' => 'chi', 'CARHR200340' => 'chi', 'CARHR232370' => 'chi', 'CARHR244670' => 'chi', 'CARHR244680' => 'chi', 'CARHR257520' => 'chi', 'Carub.0001s1872' => 'cru', 'Carub.0006s1130' => 'cru', 'Carub.0007s0396' => 'cru', 'Carub.0007s0397' => 'cru', 'Carub.0007s1608' => 'cru', 'Carub.0008s1068' => 'cru', 'Carub.0008s1077' => 'cru', 'Ca_16158_v3' => 'car', 'Ca_17571_v3' => 'car', 'Ca_21936_v3' => 'car', 'Ca_22350_v3' => 'car', 'CBR_g22445' => 'cbr', 'CBR_g26290' => 'cbr', 'Cc04_g09610' => 'ccan', 'Cc04_g12280' => 'ccan', 'Cc07_g10230' => 'ccan', 'CDE02G0093' => 'cde', 'CDE02G0701' => 'cde', 'CDE04G1050' => 'cde', 'CDE05G1833' => 'cde', 'CDE05G3058' => 'cde', 'CDE05G3380' => 'cde', 'CDE06G0536' => 'cde', 'Cfa006923' => 'cfa', 'Cfa009402' => 'cfa', 'Cfa018751' => 'cfa', 'Cfa019164' => 'cfa', 'Cfa022935' => 'cfa', 'Ciclev10019081m.g' => 'ccl', 'Ciclev10025076m.g' => 'ccl', 'Ciclev10030712m.g' => 'ccl', 'Ciclev10033760m.g' => 'ccl', 'CiPaw.05G105600' => 'cil', 'CiPaw.08G136700' => 'cil', 'CiPaw.11G003900' => 'cil', 'CiPaw.11G023700' => 'cil', 'CiPaw.12G003700' => 'cil', 'ClCG06G017100' => 'cla', 'ClCG06G018110' => 'cla', 'ClCG07G008800' => 'cla', 'ClCG07G015330' => 'cla', 'COL.COLO4_13698' => 'col', 'COL.COLO4_16659' => 'col', 'COL.COLO4_21986' => 'col', 'COL.COLO4_24049' => 'col', 'COL.COLO4_29061' => 'col', 'COL.COLO4_29075' => 'col', 'COL.COLO4_30094' => 'col', 'Cpa.g.c33689' => 'cpa', 'Cpa.g.sc108.39' => 'cpa', 'Cpa.g.sc108.41' => 'cpa', 'Cpa.g.sc1163.1' => 'cpa', 'Cpa.g.sc4.155' => 'cpa', 'Cpa.g.sc6.194' => 'cpa', 'CsaV3_1G000340' => 'csa', 'CsaV3_1G001400' => 'csa', 'CsaV3_4G002220' => 'csa', 'CsaV3_4G005370' => 'csa', 'CSS0007487' => 'camsi', 'CSS0008066' => 'camsi', 'CSS0009120' => 'camsi', 'CSS0015512' => 'camsi', 'CSS0022409' => 'camsi', 'CSS0025358' => 'camsi', 'CSS0044547' => 'camsi', 'DCAR_013057' => 'dca', 'DCAR_015058' => 'dca', 'DCAR_016027' => 'dca', 'DCAR_017327' => 'dca', 'DCAR_020743' => 'dca', 'DCAR_026157' => 'dca', 'DCAR_032339' => 'dca', 'DCAR_032340' => 'dca', 'Dinv11200' => 'din', 'Dinv11201' => 'din', 'Dinv20631' => 'din', 'Dinv23182' => 'din', 'Dinv33466' => 'din', 'Dinv33583' => 'din', 'Dinv38565' => 'din', 'Duzib068G0200' => 'dzi', 'Duzib147G0132' => 'dzi', 'Duzib147G0635' => 'dzi', 'Duzib205G1670' => 'dzi', 'Duzib251G0606' => 'dzi', 'ECA232G3336' => 'eca', 'ECA232G3763' => 'eca', 'ECA232G4845' => 'eca', 'ECA234G1607' => 'eca', 'ECA246G0932' => 'eca', 'ECA247G0781' => 'eca', 'ECA247G1932' => 'eca', 'ECA247G2079' => 'eca', 'ECA247G3338' => 'eca', 'ECA247G4115' => 'eca', 'EL10Ac3g06552' => 'bvu', 'EL10Ac5g10721' => 'bvu', 'EL10Ac5g10722' => 'bvu', 'EL10Ac5g10723' => 'bvu', 'EL10Ac5g11361' => 'bvu', 'EL10Ac6g13553' => 'bvu', 'EL10As8g23872' => 'bvu', 'Eucgr.B00250' => 'egr', 'Eucgr.B00251' => 'egr', 'Eucgr.B03533' => 'egr', 'Eucgr.I02381' => 'egr', 'Eucgr.K02700' => 'egr', 'FAN02G0174' => 'fan', 'FAN02G3146' => 'fan', 'FAN04G1672' => 'fan', 'FAN04G2273' => 'fan', 'FAN05G2791' => 'fan', 'FAN05G4035' => 'fan', 'FAN07G0834' => 'fan', 'FAN08G1198' => 'fan', 'FAN09G4182' => 'fan', 'FAN12G0496' => 'fan', 'FAN13G1027' => 'fan', 'FAN13G2951' => 'fan', 'FAN14G0705' => 'fan', 'FAN14G0720' => 'fan', 'FAN17G0201' => 'fan', 'FAN17G2665' => 'fan', 'FAN18G1456' => 'fan', 'FAN18G1525' => 'fan', 'FAN18G3500' => 'fan', 'FAN28G2670' => 'fan', 'FvH4_1g12391' => 'fve', 'FvH4_4g23220' => 'fve', 'FvH4_5g08810' => 'fve', 'FvH4_5g28960' => 'fve', 'FvH4_6g42820' => 'fve', 'FvH4_6g51110' => 'fve', 'Glyma.02G051802' => 'gma', 'Glyma.04G185300' => 'gma', 'Glyma.05G202900' => 'gma', 'Glyma.08G010300' => 'gma', 'Glyma.16G131900' => 'gma', 'Glyma.17G087900' => 'gma', 'Gohir.A07G048600' => 'ghi', 'Gohir.A11G179000' => 'ghi', 'Gohir.A12G140900' => 'ghi', 'Gohir.A12G140950' => 'ghi', 'Gohir.A12G191700' => 'ghi', 'Gohir.A13G086300' => 'ghi', 'Gohir.D07G052900' => 'ghi', 'Gohir.D11G186600' => 'ghi', 'Gohir.D12G145575' => 'ghi', 'Gohir.D12G145650' => 'ghi', 'Gohir.D12G145725' => 'ghi', 'Gohir.D12G194050' => 'ghi', 'Gohir.D13G091800' => 'ghi', 'Gorai.001G055900' => 'gra', 'Gorai.007G198400' => 'gra', 'Gorai.008G157000' => 'gra', 'Gorai.008G157100' => 'gra', 'Gorai.008G208700' => 'gra', 'Gorai.010G138700' => 'gra', 'GSVIVG01000977001' => 'vvi', 'GSVIVG01007708001' => 'vvi', 'GSVIVG01008587001' => 'vvi', 'GSVIVG01018849001' => 'vvi', 'GSVIVG01032432001' => 'vvi', 'HanXRQChr02g0034131' => 'han', 'HanXRQChr02g0035981' => 'han', 'HanXRQChr02g0035991' => 'han', 'HanXRQChr05g0155611' => 'han', 'HanXRQChr05g0155621' => 'han', 'HanXRQChr08g0236501' => 'han', 'HanXRQChr09g0261321' => 'han', 'HanXRQChr09g0272081' => 'han', 'HanXRQChr10g0310741' => 'han', 'HanXRQChr11g0325591' => 'han', 'HanXRQChr12g0385691' => 'han', 'HanXRQChr13g0387801' => 'han', 'HanXRQChr15g0463011' => 'han', 'Haze_03826' => 'cav', 'Haze_03827' => 'cav', 'Haze_07183' => 'cav', 'Haze_07537' => 'cav', 'Haze_07539' => 'cav', 'Haze_12461' => 'cav', 'Haze_16115' => 'cav', 'Haze_16808' => 'cav', 'Haze_18531' => 'cav', 'Hma1.2p1_0046F.1_g026700' => 'hma', 'Hma1.2p1_0046F.1_g026710' => 'hma', 'Hma1.2p1_0168F.1_g074340' => 'hma', 'Hma1.2p1_0266F.1_g107030' => 'hma', 'Hma1.2p1_0266F.1_g107060' => 'hma', 'Hma1.2p1_0275F.1_g110510' => 'hma', 'Hma1.2p1_0592F.1_g185490' => 'hma', 'Hma1.2p1_0592F.1_g185500' => 'hma', 'Hma1.2p1_0592F.1_g185510' => 'hma', 'Hma1.2p1_0592F.1_g185520' => 'hma', 'Hma1.2p1_0592F.1_g185530' => 'hma', 'Hma1.2p1_0818F.1_g223450' => 'hma', 'HPP92_009708' => 'vpl', 'HPP92_009793' => 'vpl', 'HPP92_009796' => 'vpl', 'HPP92_009797' => 'vpl', 'HPP92_014940' => 'vpl', 'HPP92_014988' => 'vpl', 'Hund02463' => 'sun', 'Hund02760' => 'sun', 'Hund05071' => 'sun', 'Hund10108' => 'sun', 'Hund11204' => 'sun', 'Hund14016' => 'sun', 'Hund16464' => 'sun', 'Lalb_Chr09g0333391' => 'lal', 'Lalb_Chr11g0070461' => 'lal', 'Lalb_Chr12g0201671' => 'lal', 'Lalb_Chr13g0297161' => 'lal', 'Lj1g0002823' => 'lja', 'Lj3C1074T6' => 'lonja', 'Lj4A212T28' => 'lonja', 'Lj4g0005516' => 'lja', 'Lj4g0013705' => 'lja', 'Lj4g0027865' => 'lja', 'Lj5C92G16' => 'lonja', 'Lj5C92T12' => 'lonja', 'Lj7C596T3' => 'lonja', 'Lj9A446G59' => 'lonja', 'Lj9A482G21' => 'lonja', 'Lsat_1_v5_gn_1_28261' => 'lsa', 'Lsat_1_v5_gn_1_28281' => 'lsa', 'Lsat_1_v5_gn_1_32721' => 'lsa', 'Lsat_1_v5_gn_4_151760' => 'lsa', 'Lsat_1_v5_gn_4_2120' => 'lsa', 'Lsat_1_v5_gn_4_75761' => 'lsa', 'Lsat_1_v5_gn_5_10920' => 'lsa', 'Manes.02G099900' => 'mes', 'Manes.11G096200' => 'mes', 'Manes.12G007200' => 'mes', 'Manes.14G048300' => 'mes', 'Manes.17G114700' => 'mes', 'Mapoly0002s0070' => 'mpo', 'Mapoly0029s0099' => 'mpo', 'MBI07_g24742_MAGBIO' => 'mbi', 'MBI10_g27988_MAGBIO' => 'mbi', 'MBI11_g13057_MAGBIO' => 'mbi', 'MD02G1137200' => 'mdo', 'MD06G1137200' => 'mdo', 'MD07G1122300' => 'mdo', 'MD09G1078200' => 'mdo', 'MD13G1123700' => 'mdo', 'MD14G1151900' => 'mdo', 'MD17G1030900' => 'mdo', 'MD17G1068200' => 'mdo', 'MD17G1068600' => 'mdo', 'Medtr3g077540' => 'mtr', 'Medtr4g105530' => 'mtr', 'Medtr8g076580' => 'mtr', 'Medtr8g076590' => 'mtr', 'Medtr8g096410' => 'mtr', 'MELO3C016411.2' => 'cme', 'MELO3C017780.2' => 'cme', 'MELO3C022560.2' => 'cme', 'MELO3C026187.2' => 'cme', 'MELO3C026286.2' => 'cme', 'MELO3C032854.2' => 'cme', 'Migut.H02495' => 'egut', 'Migut.I00561' => 'egut', 'Migut.K01015' => 'egut', 'Migut.K01016' => 'egut', 'Migut.L00743' => 'egut', 'Migut.L00744' => 'egut', 'Migut.L00746' => 'egut', 'Migut.L00798' => 'egut', 'Migut.L00799' => 'egut', 'Migut.N02096' => 'egut', 'MSTRG.11259' => 'ama', 'MSTRG.23142' => 'ama', 'MSTRG.2499' => 'ama', 'Nitab4.5_0000003g0730' => 'nta', 'Nitab4.5_0000137g0020' => 'nta', 'Nitab4.5_0000721g0210' => 'nta', 'Nitab4.5_0000723g0050' => 'nta', 'Nitab4.5_0000913g0070' => 'nta', 'Nitab4.5_0001332g0040' => 'nta', 'Nitab4.5_0001771g0050' => 'nta', 'Nitab4.5_0001918g0050' => 'nta', 'Nitab4.5_0002686g0030' => 'nta', 'Nitab4.5_0003156g0020' => 'nta', 'Nitab4.5_0003383g0040' => 'nta', 'Nitab4.5_0003918g0010' => 'nta', 'Nitab4.5_0006760g0010' => 'nta', 'Nn1g05981' => 'nnu', 'Nn1g06288' => 'nnu', 'Nn3g16371' => 'nnu', 'Nn3g16786' => 'nnu', 'Nn4g22232' => 'nnu', 'Oeu005144.1' => 'oeu', 'Oeu005145.1' => 'oeu', 'Oeu011348.1' => 'oeu', 'Oeu016415.1' => 'oeu', 'Oeu023501.1' => 'oeu', 'Oeu044473.1' => 'oeu', 'Oeu048892.2' => 'oeu', 'Os01g0549200' => 'osa', 'Os02g0469300' => 'osa', 'Os04g0311100' => 'osa', 'Os06g0474900' => 'osa', 'Os10g0181700' => 'osa', 'Os11g0454800' => 'osa', 'Peaxi162Scf00037g00714' => 'pax', 'Peaxi162Scf00084g01217' => 'pax', 'Peaxi162Scf00257g00217' => 'pax', 'Peaxi162Scf00516g00215' => 'pax', 'Peaxi162Scf00689g00123' => 'pax', 'PGR044G2719' => 'pgr', 'PGR083G1360' => 'pgr', 'PGR102G2849' => 'pgr', 'PGR119G2534' => 'pgr', 'PGSC0003DMG400003538' => 'stu', 'PGSC0003DMG400028138' => 'stu', 'PGSC0003DMG400031732' => 'stu', 'PGSC0003DMG400038165' => 'stu', 'Phvul.002G284600' => 'pvu', 'Phvul.003G258200' => 'pvu', 'Phvul.009G176500' => 'pvu', 'Potri.003G167201' => 'ptr', 'Potri.005G118400' => 'ptr', 'Potri.012G089000' => 'ptr', 'Potri.012G102800' => 'ptr', 'Potri.015G079400' => 'ptr', 'Potri.015G100900' => 'ptr', 'Pp3c14_9810' => 'ppa', 'Pp3c15_10450' => 'ppa', 'Pp3c20_19150' => 'ppa', 'Pp3c23_12740' => 'ppa', 'Pp3c23_6310' => 'ppa', 'Pp3c24_3720' => 'ppa', 'Pp3c27_2580' => 'ppa', 'Pp3c9_8990' => 'ppa', 'PRCOL_00002854' => 'pco', 'Prupe.1G221200' => 'ppe', 'Prupe.3G289000' => 'ppe', 'Prupe.5G147000' => 'ppe', 'Prupe.6G157300' => 'ppe', 'Prupe.7G163400' => 'ppe', 'Psat0s2177g0040' => 'psa', 'Psat3g174760' => 'psa', 'Psat3g192160' => 'psa', 'Psat4g058520' => 'psa', 'Psat4g096840' => 'psa', 'Psat7g037320' => 'psa', 'PSO017G1274' => 'pso', 'PSO017G5166' => 'pso', 'PSO063G4558' => 'pso', 'PSO170G4458' => 'pso', 'PSO170G5005' => 'pso', 'PSO210G6156' => 'pso', 'PSO210G6635' => 'pso', 'PSO210G7397' => 'pso', 'PSO210G7700' => 'pso', 'PSO455G0035' => 'pso', 'PSO455G0180' => 'pso', 'PSO478G4515' => 'pso', 'PSO832G1305' => 'pso', 'PSO832G3489' => 'pso', 'QL02p075247' => 'qlo', 'QL03p051148' => 'qlo', 'QL05p010313' => 'qlo', 'QL06p034627' => 'qlo', 'QL10p001889' => 'qlo', 'QL10p010846' => 'qlo', 'RcHm_v2.0_Chr1g0350621' => 'rch', 'RcHm_v2.0_Chr1g0350641' => 'rch', 'RcHm_v2.0_Chr2g0092891' => 'rch', 'RcHm_v2.0_Chr2g0100251' => 'rch', 'RcHm_v2.0_Chr2g0158661' => 'rch', 'RcHm_v2.0_Chr2g0172741' => 'rch', 'RcHm_v2.0_Chr4g0429571' => 'rch', 'RcHm_v2.0_Chr5g0042471' => 'rch', 'RcHm_v2.0_Chr7g0189451' => 'rch', 'Rhsim08G0052000' => 'rsi', 'Rhsim08G0174400' => 'rsi', 'Rhsim08G0193200' => 'rsi', 'Rhsim10G0214800' => 'rsi', 'Rhsim10G0214900' => 'rsi', 'Rhsim10G0215000' => 'rsi', 'Rhsim12G0022900' => 'rsi', 'Rhsim12G0177500' => 'rsi', 'Rhsim12G0177700' => 'rsi', 'Sabra03G0122600' => 'sbr', 'Sabra05G0097400' => 'sbr', 'Sabra12G0064100' => 'sbr', 'Sabra15G0121300' => 'sbr', 'SalBow2G0642' => 'sbo', 'SalBow5G2667' => 'sbo', 'SalBow5G4873' => 'sbo', 'SalBow8G2395' => 'sbo', 'Sc03g0003290' => 'sci', 'Sc10g0010130' => 'sci', 'Sc22g0003650' => 'sci', 'Sed0001603' => 'sed', 'Sed0004259' => 'sed', 'Sed0006789' => 'sed', 'Sed0011838' => 'sed', 'Sed0012964' => 'sed', 'Sed0016383' => 'sed', 'Sed0019010' => 'sed', 'Sed0020188' => 'sed', 'SEGI_04702' => 'sgi', 'SEGI_17231' => 'sgi', 'SEGI_18877' => 'sgi', 'SEGI_25196' => 'sgi', 'SEGI_25515' => 'sgi', 'SEGI_28445' => 'sgi', 'SEGI_37452' => 'sgi', 'SGA_v2.0_scaffold188G40336' => 'sas', 'SGA_v2.0_scaffold228G43247' => 'sas', 'SGA_v2.0_scaffold280G46853' => 'sas', 'SGA_v2.0_scaffold34G13808' => 'sas', 'SGA_v2.0_scaffold40G15576' => 'sas', 'SGA_v2.0_scaffold611G53188' => 'sas', 'SGA_v2.0_scaffold78G25461' => 'sas', 'SGA_v2.0_scaffold90G27888' => 'sas', 'SHI08601' => 'shi', 'SHI08606' => 'shi', 'SHI17117' => 'shi', 'SHI17119' => 'shi', 'SMO118G0201' => 'smo', 'SMO169G0247' => 'smo', 'SMO176G0006' => 'smo', 'SMO176G0015' => 'smo', 'SMO202G0006' => 'smo', 'SMO240G0050' => 'smo', 'SMO286G0009' => 'smo', 'SMO338G0033' => 'smo', 'SMO356G0533' => 'smo', 'SMO364G0382' => 'smo', 'SMO367G0166' => 'smo', 'SMO367G1098' => 'smo', 'Solyc01g009920.3' => 'sly', 'Solyc01g099300.3' => 'sly', 'Solyc02g084700.3' => 'sly', 'Solyc03g097520.3' => 'sly', 'Solyc06g071580.3' => 'sly', 'Solyc10g081760.3' => 'sly', 'Sopen01g005480' => 'spe', 'Sopen01g042850' => 'spe', 'Sopen02g029370' => 'spe', 'Sopen03g028280' => 'spe', 'Sopen06g027870' => 'spe', 'Sopen10g032270' => 'spe', 'Sp5g18180' => 'spa', 'Sp6g12880' => 'spa', 'Sp6g30850' => 'spa', 'Sp7g22960' => 'spa', 'Sp7g34010' => 'spa', 'SpUn1326_0010' => 'spa', 'TAR371G0242' => 'tar', 'TAR622G0638' => 'tar', 'TAR628G1548' => 'tar', 'TAR629G1079' => 'tar', 'TAR629G3413' => 'tar', 'THA.LOC104804249' => 'tha', 'THA.LOC104808315' => 'tha', 'THA.LOC104809238' => 'tha', 'THA.LOC104825484' => 'tha', 'Thecc.01G025500' => 'tca', 'Thecc.03G015800' => 'tca', 'Thecc.03G018000' => 'tca', 'Thecc.03G134800' => 'tca', 'Thecc.04G014700' => 'tca', 'Thhalv10006991m.g' => 'esa', 'Thhalv10012707m.g' => 'esa', 'Thhalv10015739m.g' => 'esa', 'Thhalv10024553m.g' => 'esa', 'Thhalv10024673m.g' => 'esa', 'Thhalv10029187m.g' => 'esa', 'TPR.G12971' => 'tpr', 'TPR.G29396' => 'tpr', 'TPR.G33376' => 'tpr', 'TPR.G35508' => 'tpr', 'TPR.G35516' => 'tpr', 'TPR.G37317' => 'tpr', 'TPR.G37389' => 'tpr', 'TPR.G37523' => 'tpr', 'TPR.G559' => 'tpr', 'TWI14G0070' => 'twi', 'TWI14G0729' => 'twi', 'TWI18G0596' => 'twi', 'TWI39G0780' => 'twi', 'TWI39G0850' => 'twi', 'TWI73G1052' => 'twi', 'unitig_52.g17485' => 'ugi', 'unitig_61.g26355' => 'ugi', 'vmacro01040' => 'vma', 'vmacro16731' => 'vma', 'vmacro18270' => 'vma', 'vmacro19142' => 'vma', 'vmacro19407' => 'vma', 'vmacro19408' => 'vma', 'vmacro21899' => 'vma', 'vmacro21900' => 'vma', 'vmacro21901' => 'vma', 'VMungo0251G0490' => 'vmu', 'VMungo0251G1748' => 'vmu', 'VMungo1309G0421' => 'vmu', 'Zm00001eb086500' => 'zma', 'Zm00001eb150680' => 'zma', 'Zm00001eb162330' => 'zma', 'Zm00001eb203130' => 'zma', 'Zm00001eb369480' => 'zma', 'Zm00001eb382340' => 'zma', 'Zm00001eb416360' => 'zma' ), 'gf_id' => 'HOM05D000902', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000902' ), 'data_identifier' => 'HOM05D000902', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000902', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '663', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02470' => 'bna', 'A01p16260' => 'bna', 'A02p01680' => 'bna', 'A03p16600' => 'bna', 'A03p55660' => 'bna', 'A03p64160' => 'bna', 'A03p64170' => 'bna', 'A08p31900' => 'bna', 'A09p59530' => 'bna', 'A10p08230' => 'bna', 'A10p25090' => 'bna', 'Aa31LG3G7100' => 'aar', 'Aa31LG3G7110' => 'aar', 'Aa31LG6G13160' => 'aar', 'Aa31LG7G10770' => 'aar', 'Aa31LG7G3830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2723' => 'aag', 'Actinidia08045' => 'ach', 'Actinidia08888' => 'ach', 'Actinidia18333' => 'ach', 'Actinidia19334' => 'ach', 'Actinidia25552' => 'ach', 'Actinidia26089' => 'ach', 'Actinidia30615' => 'ach', 'Actinidia30616' => 'ach', 'Actinidia33083' => 'ach', 'Actinidia35762' => 'ach', 'Ah.02g110620' => 'amhyb', 'Ah.11g046390' => 'amhyb', 'AL1G31670' => 'aly', 'AL6G23730' => 'aly', 'AL7G14740' => 'aly', 'AL7G14750' => 'aly', 'AL7G14760' => 'aly', 'AL7G28220' => 'aly', 'AL8G24940' => 'aly', 'Aqoxy3G01665' => 'aox', 'Aqoxy3G02853' => 'aox', 'Aqoxy5G01513' => 'aox', 'Aqoxy5G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8SKA4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ75LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKDA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0LJZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7REX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZP4YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWX7I5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2QKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS0L9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPCD8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q161UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC7XCF' => 'arhy', 'AT1G19100' => 'ath', 'AT4G24970' => 'ath', 'AT4G36270' => 'ath', 'AT4G36280' => 'ath', 'AT4G36290' => 'ath', 'AT5G13130' => 'ath', 'AT5G50780' => 'ath', 'ATR0582G266' => 'atr', 'ATR0661G195' => 'atr', 'ATR1152G031' => 'atr', 'Atru.chr11.2382' => 'acertr', 'Atru.chr12.2337' => 'acertr', 'Atru.chr3.744' => 'acertr', 'Atru.chr6.1870' => 'acertr', 'Atru.chr9.2515' => 'acertr', 'AUR62004120' => 'cqu', 'AUR62005667' => 'cqu', 'AUR62007634' => 'cqu', 'AUR62008186' => 'cqu', 'AUR62008187' => 'cqu', 'AUR62008188' => 'cqu', 'AUR62027954' => 'cqu', 'AUR62028766' => 'cqu', 'AUR62028767' => 'cqu', 'AUR62028768' => 'cqu', 'AUR62028886' => 'cqu', 'AUR62029563' => 'cqu', 'AUR62038832' => 'cqu', 'BcaB01g04149' => 'bca', 'BcaB03g12940' => 'bca', 'BcaB03g13090' => 'bca', 'BcaB03g14466' => 'bca', 'BcaB05g24035' => 'bca', 'BcaC01g06050' => 'bca', 'BcaC04g19148' => 'bca', 'BcaC04g20761' => 'bca', 'BcaC06g32845' => 'bca', 'BcaC07g41274' => 'bca', 'BcaC09g50827' => 'bca', 'BcaNung00741' => 'bca', 'BcaNung00742' => 'bca', 'BcaNung01859' => 'bca', 'BcaNung03985' => 'bca', 'BcaNung03989' => 'bca', 'BcaNung05661' => 'bca', 'BolC1t00257H' => 'bol', 'BolC1t01956H' => 'bol', 'BolC2t06534H' => 'bol', 'BolC3t14334H' => 'bol', 'BolC5t30451H' => 'bol', 'BolC7t45880H' => 'bol', 'BolC7t46586H' => 'bol', 'BolC8t49301H' => 'bol', 'BolC8t51837H' => 'bol', 'BolC9t56822H' => 'bol', 'BolC9t59235H' => 'bol', 'BraA01t00234Z' => 'bra', 'BraA01t01563Z' => 'bra', 'BraA02t05147Z' => 'bra', 'BraA03t10947Z' => 'bra', 'BraA03t14633Z' => 'bra', 'BraA08t35112Z' => 'bra', 'BraA09t41330Z' => 'bra', 'BraA10t44570Z' => 'bra', 'C01p02670' => 'bna', 'C01p20260' => 'bna', 'C02p05890' => 'bna', 'C03p19530' => 'bna', 'C05p17470' => 'bna', 'C07p53900' => 'bna', 'C07p61630' => 'bna', 'C08p16800' => 'bna', 'C08p42810' => 'bna', 'C09p39480' => 'bna', 'C09p63980' => 'bna', 'CAN.G1001.7' => 'can', 'CAN.G1034.55' => 'can', 'CAN.G143.7' => 'can', 'CAN.G3340.1' => 'can', 'CAN.G358.19' => 'can', 'CAN.G373.2' => 'can', 'CAN.G674.16' => 'can', 'CAN.G674.17' => 'can', 'CAN.G674.18' => 'can', 'CAN.G732.2' => 'can', 'CAN.G732.3' => 'can', 'CAN.G993.39' => 'can', 'CANSAT01G2052' => 'cansat', 'CANSAT80G0070' => 'cansat', 'CANSAT80G0483' => 'cansat', 'CANSAT80G0625' => 'cansat', 'CARHR019690' => 'chi', 'CARHR080280' => 'chi', 'CARHR152750' => 'chi', 'CARHR152760' => 'chi', 'CARHR152770' => 'chi', 'CARHR200340' => 'chi', 'CARHR232370' => 'chi', 'CARHR244670' => 'chi', 'CARHR244680' => 'chi', 'CARHR257520' => 'chi', 'Carub.0001s1872' => 'cru', 'Carub.0006s1130' => 'cru', 'Carub.0007s0396' => 'cru', 'Carub.0007s0397' => 'cru', 'Carub.0007s1608' => 'cru', 'Carub.0008s1068' => 'cru', 'Carub.0008s1077' => 'cru', 'Ca_16158_v3' => 'car', 'Ca_17571_v3' => 'car', 'Ca_21936_v3' => 'car', 'Ca_22350_v3' => 'car', 'CBR_g22445' => 'cbr', 'CBR_g26290' => 'cbr', 'Cc04_g09610' => 'ccan', 'Cc04_g12280' => 'ccan', 'Cc07_g10230' => 'ccan', 'CDE02G0093' => 'cde', 'CDE02G0701' => 'cde', 'CDE04G1050' => 'cde', 'CDE05G1833' => 'cde', 'CDE05G3058' => 'cde', 'CDE05G3380' => 'cde', 'CDE06G0536' => 'cde', 'Cfa006923' => 'cfa', 'Cfa009402' => 'cfa', 'Cfa018751' => 'cfa', 'Cfa019164' => 'cfa', 'Cfa022935' => 'cfa', 'Ciclev10019081m.g' => 'ccl', 'Ciclev10025076m.g' => 'ccl', 'Ciclev10030712m.g' => 'ccl', 'Ciclev10033760m.g' => 'ccl', 'CiPaw.05G105600' => 'cil', 'CiPaw.08G136700' => 'cil', 'CiPaw.11G003900' => 'cil', 'CiPaw.11G023700' => 'cil', 'CiPaw.12G003700' => 'cil', 'ClCG06G017100' => 'cla', 'ClCG06G018110' => 'cla', 'ClCG07G008800' => 'cla', 'ClCG07G015330' => 'cla', 'COL.COLO4_13698' => 'col', 'COL.COLO4_16659' => 'col', 'COL.COLO4_21986' => 'col', 'COL.COLO4_24049' => 'col', 'COL.COLO4_29061' => 'col', 'COL.COLO4_29075' => 'col', 'COL.COLO4_30094' => 'col', 'Cpa.g.c33689' => 'cpa', 'Cpa.g.sc108.39' => 'cpa', 'Cpa.g.sc108.41' => 'cpa', 'Cpa.g.sc1163.1' => 'cpa', 'Cpa.g.sc4.155' => 'cpa', 'Cpa.g.sc6.194' => 'cpa', 'CsaV3_1G000340' => 'csa', 'CsaV3_1G001400' => 'csa', 'CsaV3_4G002220' => 'csa', 'CsaV3_4G005370' => 'csa', 'CSS0007487' => 'camsi', 'CSS0008066' => 'camsi', 'CSS0009120' => 'camsi', 'CSS0015512' => 'camsi', 'CSS0022409' => 'camsi', 'CSS0025358' => 'camsi', 'CSS0044547' => 'camsi', 'DCAR_013057' => 'dca', 'DCAR_015058' => 'dca', 'DCAR_016027' => 'dca', 'DCAR_017327' => 'dca', 'DCAR_020743' => 'dca', 'DCAR_026157' => 'dca', 'DCAR_032339' => 'dca', 'DCAR_032340' => 'dca', 'Dinv11200' => 'din', 'Dinv11201' => 'din', 'Dinv20631' => 'din', 'Dinv23182' => 'din', 'Dinv33466' => 'din', 'Dinv33583' => 'din', 'Dinv38565' => 'din', 'Duzib068G0200' => 'dzi', 'Duzib147G0132' => 'dzi', 'Duzib147G0635' => 'dzi', 'Duzib205G1670' => 'dzi', 'Duzib251G0606' => 'dzi', 'ECA232G3336' => 'eca', 'ECA232G3763' => 'eca', 'ECA232G4845' => 'eca', 'ECA234G1607' => 'eca', 'ECA246G0932' => 'eca', 'ECA247G0781' => 'eca', 'ECA247G1932' => 'eca', 'ECA247G2079' => 'eca', 'ECA247G3338' => 'eca', 'ECA247G4115' => 'eca', 'EL10Ac3g06552' => 'bvu', 'EL10Ac5g10721' => 'bvu', 'EL10Ac5g10722' => 'bvu', 'EL10Ac5g10723' => 'bvu', 'EL10Ac5g11361' => 'bvu', 'EL10Ac6g13553' => 'bvu', 'EL10As8g23872' => 'bvu', 'Eucgr.B00250' => 'egr', 'Eucgr.B00251' => 'egr', 'Eucgr.B03533' => 'egr', 'Eucgr.I02381' => 'egr', 'Eucgr.K02700' => 'egr', 'FAN02G0174' => 'fan', 'FAN02G3146' => 'fan', 'FAN04G1672' => 'fan', 'FAN04G2273' => 'fan', 'FAN05G2791' => 'fan', 'FAN05G4035' => 'fan', 'FAN07G0834' => 'fan', 'FAN08G1198' => 'fan', 'FAN09G4182' => 'fan', 'FAN12G0496' => 'fan', 'FAN13G1027' => 'fan', 'FAN13G2951' => 'fan', 'FAN14G0705' => 'fan', 'FAN14G0720' => 'fan', 'FAN17G0201' => 'fan', 'FAN17G2665' => 'fan', 'FAN18G1456' => 'fan', 'FAN18G1525' => 'fan', 'FAN18G3500' => 'fan', 'FAN28G2670' => 'fan', 'FvH4_1g12391' => 'fve', 'FvH4_4g23220' => 'fve', 'FvH4_5g08810' => 'fve', 'FvH4_5g28960' => 'fve', 'FvH4_6g42820' => 'fve', 'FvH4_6g51110' => 'fve', 'Glyma.02G051802' => 'gma', 'Glyma.04G185300' => 'gma', 'Glyma.05G202900' => 'gma', 'Glyma.08G010300' => 'gma', 'Glyma.16G131900' => 'gma', 'Glyma.17G087900' => 'gma', 'Gohir.A07G048600' => 'ghi', 'Gohir.A11G179000' => 'ghi', 'Gohir.A12G140900' => 'ghi', 'Gohir.A12G140950' => 'ghi', 'Gohir.A12G191700' => 'ghi', 'Gohir.A13G086300' => 'ghi', 'Gohir.D07G052900' => 'ghi', 'Gohir.D11G186600' => 'ghi', 'Gohir.D12G145575' => 'ghi', 'Gohir.D12G145650' => 'ghi', 'Gohir.D12G145725' => 'ghi', 'Gohir.D12G194050' => 'ghi', 'Gohir.D13G091800' => 'ghi', 'Gorai.001G055900' => 'gra', 'Gorai.007G198400' => 'gra', 'Gorai.008G157000' => 'gra', 'Gorai.008G157100' => 'gra', 'Gorai.008G208700' => 'gra', 'Gorai.010G138700' => 'gra', 'GSVIVG01000977001' => 'vvi', 'GSVIVG01007708001' => 'vvi', 'GSVIVG01008587001' => 'vvi', 'GSVIVG01018849001' => 'vvi', 'GSVIVG01032432001' => 'vvi', 'HanXRQChr02g0034131' => 'han', 'HanXRQChr02g0035981' => 'han', 'HanXRQChr02g0035991' => 'han', 'HanXRQChr05g0155611' => 'han', 'HanXRQChr05g0155621' => 'han', 'HanXRQChr08g0236501' => 'han', 'HanXRQChr09g0261321' => 'han', 'HanXRQChr09g0272081' => 'han', 'HanXRQChr10g0310741' => 'han', 'HanXRQChr11g0325591' => 'han', 'HanXRQChr12g0385691' => 'han', 'HanXRQChr13g0387801' => 'han', 'HanXRQChr15g0463011' => 'han', 'Haze_03826' => 'cav', 'Haze_03827' => 'cav', 'Haze_07183' => 'cav', 'Haze_07537' => 'cav', 'Haze_07539' => 'cav', 'Haze_12461' => 'cav', 'Haze_16115' => 'cav', 'Haze_16808' => 'cav', 'Haze_18531' => 'cav', 'Hma1.2p1_0046F.1_g026700' => 'hma', 'Hma1.2p1_0046F.1_g026710' => 'hma', 'Hma1.2p1_0168F.1_g074340' => 'hma', 'Hma1.2p1_0266F.1_g107030' => 'hma', 'Hma1.2p1_0266F.1_g107060' => 'hma', 'Hma1.2p1_0275F.1_g110510' => 'hma', 'Hma1.2p1_0592F.1_g185490' => 'hma', 'Hma1.2p1_0592F.1_g185500' => 'hma', 'Hma1.2p1_0592F.1_g185510' => 'hma', 'Hma1.2p1_0592F.1_g185520' => 'hma', 'Hma1.2p1_0592F.1_g185530' => 'hma', 'Hma1.2p1_0818F.1_g223450' => 'hma', 'HPP92_009708' => 'vpl', 'HPP92_009793' => 'vpl', 'HPP92_009796' => 'vpl', 'HPP92_009797' => 'vpl', 'HPP92_014940' => 'vpl', 'HPP92_014988' => 'vpl', 'Hund02463' => 'sun', 'Hund02760' => 'sun', 'Hund05071' => 'sun', 'Hund10108' => 'sun', 'Hund11204' => 'sun', 'Hund14016' => 'sun', 'Hund16464' => 'sun', 'Lalb_Chr09g0333391' => 'lal', 'Lalb_Chr11g0070461' => 'lal', 'Lalb_Chr12g0201671' => 'lal', 'Lalb_Chr13g0297161' => 'lal', 'Lj1g0002823' => 'lja', 'Lj3C1074T6' => 'lonja', 'Lj4A212T28' => 'lonja', 'Lj4g0005516' => 'lja', 'Lj4g0013705' => 'lja', 'Lj4g0027865' => 'lja', 'Lj5C92G16' => 'lonja', 'Lj5C92T12' => 'lonja', 'Lj7C596T3' => 'lonja', 'Lj9A446G59' => 'lonja', 'Lj9A482G21' => 'lonja', 'Lsat_1_v5_gn_1_28261' => 'lsa', 'Lsat_1_v5_gn_1_28281' => 'lsa', 'Lsat_1_v5_gn_1_32721' => 'lsa', 'Lsat_1_v5_gn_4_151760' => 'lsa', 'Lsat_1_v5_gn_4_2120' => 'lsa', 'Lsat_1_v5_gn_4_75761' => 'lsa', 'Lsat_1_v5_gn_5_10920' => 'lsa', 'Manes.02G099900' => 'mes', 'Manes.11G096200' => 'mes', 'Manes.12G007200' => 'mes', 'Manes.14G048300' => 'mes', 'Manes.17G114700' => 'mes', 'Mapoly0002s0070' => 'mpo', 'Mapoly0029s0099' => 'mpo', 'MBI07_g24742_MAGBIO' => 'mbi', 'MBI10_g27988_MAGBIO' => 'mbi', 'MBI11_g13057_MAGBIO' => 'mbi', 'MD02G1137200' => 'mdo', 'MD06G1137200' => 'mdo', 'MD07G1122300' => 'mdo', 'MD09G1078200' => 'mdo', 'MD13G1123700' => 'mdo', 'MD14G1151900' => 'mdo', 'MD17G1030900' => 'mdo', 'MD17G1068200' => 'mdo', 'MD17G1068600' => 'mdo', 'Medtr3g077540' => 'mtr', 'Medtr4g105530' => 'mtr', 'Medtr8g076580' => 'mtr', 'Medtr8g076590' => 'mtr', 'Medtr8g096410' => 'mtr', 'MELO3C016411.2' => 'cme', 'MELO3C017780.2' => 'cme', 'MELO3C022560.2' => 'cme', 'MELO3C026187.2' => 'cme', 'MELO3C026286.2' => 'cme', 'MELO3C032854.2' => 'cme', 'Migut.H02495' => 'egut', 'Migut.I00561' => 'egut', 'Migut.K01015' => 'egut', 'Migut.K01016' => 'egut', 'Migut.L00743' => 'egut', 'Migut.L00744' => 'egut', 'Migut.L00746' => 'egut', 'Migut.L00798' => 'egut', 'Migut.L00799' => 'egut', 'Migut.N02096' => 'egut', 'MSTRG.11259' => 'ama', 'MSTRG.23142' => 'ama', 'MSTRG.2499' => 'ama', 'Nitab4.5_0000003g0730' => 'nta', 'Nitab4.5_0000137g0020' => 'nta', 'Nitab4.5_0000721g0210' => 'nta', 'Nitab4.5_0000723g0050' => 'nta', 'Nitab4.5_0000913g0070' => 'nta', 'Nitab4.5_0001332g0040' => 'nta', 'Nitab4.5_0001771g0050' => 'nta', 'Nitab4.5_0001918g0050' => 'nta', 'Nitab4.5_0002686g0030' => 'nta', 'Nitab4.5_0003156g0020' => 'nta', 'Nitab4.5_0003383g0040' => 'nta', 'Nitab4.5_0003918g0010' => 'nta', 'Nitab4.5_0006760g0010' => 'nta', 'Nn1g05981' => 'nnu', 'Nn1g06288' => 'nnu', 'Nn3g16371' => 'nnu', 'Nn3g16786' => 'nnu', 'Nn4g22232' => 'nnu', 'Oeu005144.1' => 'oeu', 'Oeu005145.1' => 'oeu', 'Oeu011348.1' => 'oeu', 'Oeu016415.1' => 'oeu', 'Oeu023501.1' => 'oeu', 'Oeu044473.1' => 'oeu', 'Oeu048892.2' => 'oeu', 'Os01g0549200' => 'osa', 'Os02g0469300' => 'osa', 'Os04g0311100' => 'osa', 'Os06g0474900' => 'osa', 'Os10g0181700' => 'osa', 'Os11g0454800' => 'osa', 'Peaxi162Scf00037g00714' => 'pax', 'Peaxi162Scf00084g01217' => 'pax', 'Peaxi162Scf00257g00217' => 'pax', 'Peaxi162Scf00516g00215' => 'pax', 'Peaxi162Scf00689g00123' => 'pax', 'PGR044G2719' => 'pgr', 'PGR083G1360' => 'pgr', 'PGR102G2849' => 'pgr', 'PGR119G2534' => 'pgr', 'PGSC0003DMG400003538' => 'stu', 'PGSC0003DMG400028138' => 'stu', 'PGSC0003DMG400031732' => 'stu', 'PGSC0003DMG400038165' => 'stu', 'Phvul.002G284600' => 'pvu', 'Phvul.003G258200' => 'pvu', 'Phvul.009G176500' => 'pvu', 'Potri.003G167201' => 'ptr', 'Potri.005G118400' => 'ptr', 'Potri.012G089000' => 'ptr', 'Potri.012G102800' => 'ptr', 'Potri.015G079400' => 'ptr', 'Potri.015G100900' => 'ptr', 'Pp3c14_9810' => 'ppa', 'Pp3c15_10450' => 'ppa', 'Pp3c20_19150' => 'ppa', 'Pp3c23_12740' => 'ppa', 'Pp3c23_6310' => 'ppa', 'Pp3c24_3720' => 'ppa', 'Pp3c27_2580' => 'ppa', 'Pp3c9_8990' => 'ppa', 'PRCOL_00002854' => 'pco', 'Prupe.1G221200' => 'ppe', 'Prupe.3G289000' => 'ppe', 'Prupe.5G147000' => 'ppe', 'Prupe.6G157300' => 'ppe', 'Prupe.7G163400' => 'ppe', 'Psat0s2177g0040' => 'psa', 'Psat3g174760' => 'psa', 'Psat3g192160' => 'psa', 'Psat4g058520' => 'psa', 'Psat4g096840' => 'psa', 'Psat7g037320' => 'psa', 'PSO017G1274' => 'pso', 'PSO017G5166' => 'pso', 'PSO063G4558' => 'pso', 'PSO170G4458' => 'pso', 'PSO170G5005' => 'pso', 'PSO210G6156' => 'pso', 'PSO210G6635' => 'pso', 'PSO210G7397' => 'pso', 'PSO210G7700' => 'pso', 'PSO455G0035' => 'pso', 'PSO455G0180' => 'pso', 'PSO478G4515' => 'pso', 'PSO832G1305' => 'pso', 'PSO832G3489' => 'pso', 'QL02p075247' => 'qlo', 'QL03p051148' => 'qlo', 'QL05p010313' => 'qlo', 'QL06p034627' => 'qlo', 'QL10p001889' => 'qlo', 'QL10p010846' => 'qlo', 'RcHm_v2.0_Chr1g0350621' => 'rch', 'RcHm_v2.0_Chr1g0350641' => 'rch', 'RcHm_v2.0_Chr2g0092891' => 'rch', 'RcHm_v2.0_Chr2g0100251' => 'rch', 'RcHm_v2.0_Chr2g0158661' => 'rch', 'RcHm_v2.0_Chr2g0172741' => 'rch', 'RcHm_v2.0_Chr4g0429571' => 'rch', 'RcHm_v2.0_Chr5g0042471' => 'rch', 'RcHm_v2.0_Chr7g0189451' => 'rch', 'Rhsim08G0052000' => 'rsi', 'Rhsim08G0174400' => 'rsi', 'Rhsim08G0193200' => 'rsi', 'Rhsim10G0214800' => 'rsi', 'Rhsim10G0214900' => 'rsi', 'Rhsim10G0215000' => 'rsi', 'Rhsim12G0022900' => 'rsi', 'Rhsim12G0177500' => 'rsi', 'Rhsim12G0177700' => 'rsi', 'Sabra03G0122600' => 'sbr', 'Sabra05G0097400' => 'sbr', 'Sabra12G0064100' => 'sbr', 'Sabra15G0121300' => 'sbr', 'SalBow2G0642' => 'sbo', 'SalBow5G2667' => 'sbo', 'SalBow5G4873' => 'sbo', 'SalBow8G2395' => 'sbo', 'Sc03g0003290' => 'sci', 'Sc10g0010130' => 'sci', 'Sc22g0003650' => 'sci', 'Sed0001603' => 'sed', 'Sed0004259' => 'sed', 'Sed0006789' => 'sed', 'Sed0011838' => 'sed', 'Sed0012964' => 'sed', 'Sed0016383' => 'sed', 'Sed0019010' => 'sed', 'Sed0020188' => 'sed', 'SEGI_04702' => 'sgi', 'SEGI_17231' => 'sgi', 'SEGI_18877' => 'sgi', 'SEGI_25196' => 'sgi', 'SEGI_25515' => 'sgi', 'SEGI_28445' => 'sgi', 'SEGI_37452' => 'sgi', 'SGA_v2.0_scaffold188G40336' => 'sas', 'SGA_v2.0_scaffold228G43247' => 'sas', 'SGA_v2.0_scaffold280G46853' => 'sas', 'SGA_v2.0_scaffold34G13808' => 'sas', 'SGA_v2.0_scaffold40G15576' => 'sas', 'SGA_v2.0_scaffold611G53188' => 'sas', 'SGA_v2.0_scaffold78G25461' => 'sas', 'SGA_v2.0_scaffold90G27888' => 'sas', 'SHI08601' => 'shi', 'SHI08606' => 'shi', 'SHI17117' => 'shi', 'SHI17119' => 'shi', 'SMO118G0201' => 'smo', 'SMO169G0247' => 'smo', 'SMO176G0006' => 'smo', 'SMO176G0015' => 'smo', 'SMO202G0006' => 'smo', 'SMO240G0050' => 'smo', 'SMO286G0009' => 'smo', 'SMO338G0033' => 'smo', 'SMO356G0533' => 'smo', 'SMO364G0382' => 'smo', 'SMO367G0166' => 'smo', 'SMO367G1098' => 'smo', 'Solyc01g009920.3' => 'sly', 'Solyc01g099300.3' => 'sly', 'Solyc02g084700.3' => 'sly', 'Solyc03g097520.3' => 'sly', 'Solyc06g071580.3' => 'sly', 'Solyc10g081760.3' => 'sly', 'Sopen01g005480' => 'spe', 'Sopen01g042850' => 'spe', 'Sopen02g029370' => 'spe', 'Sopen03g028280' => 'spe', 'Sopen06g027870' => 'spe', 'Sopen10g032270' => 'spe', 'Sp5g18180' => 'spa', 'Sp6g12880' => 'spa', 'Sp6g30850' => 'spa', 'Sp7g22960' => 'spa', 'Sp7g34010' => 'spa', 'SpUn1326_0010' => 'spa', 'TAR371G0242' => 'tar', 'TAR622G0638' => 'tar', 'TAR628G1548' => 'tar', 'TAR629G1079' => 'tar', 'TAR629G3413' => 'tar', 'THA.LOC104804249' => 'tha', 'THA.LOC104808315' => 'tha', 'THA.LOC104809238' => 'tha', 'THA.LOC104825484' => 'tha', 'Thecc.01G025500' => 'tca', 'Thecc.03G015800' => 'tca', 'Thecc.03G018000' => 'tca', 'Thecc.03G134800' => 'tca', 'Thecc.04G014700' => 'tca', 'Thhalv10006991m.g' => 'esa', 'Thhalv10012707m.g' => 'esa', 'Thhalv10015739m.g' => 'esa', 'Thhalv10024553m.g' => 'esa', 'Thhalv10024673m.g' => 'esa', 'Thhalv10029187m.g' => 'esa', 'TPR.G12971' => 'tpr', 'TPR.G29396' => 'tpr', 'TPR.G33376' => 'tpr', 'TPR.G35508' => 'tpr', 'TPR.G35516' => 'tpr', 'TPR.G37317' => 'tpr', 'TPR.G37389' => 'tpr', 'TPR.G37523' => 'tpr', 'TPR.G559' => 'tpr', 'TWI14G0070' => 'twi', 'TWI14G0729' => 'twi', 'TWI18G0596' => 'twi', 'TWI39G0780' => 'twi', 'TWI39G0850' => 'twi', 'TWI73G1052' => 'twi', 'unitig_52.g17485' => 'ugi', 'unitig_61.g26355' => 'ugi', 'vmacro01040' => 'vma', 'vmacro16731' => 'vma', 'vmacro18270' => 'vma', 'vmacro19142' => 'vma', 'vmacro19407' => 'vma', 'vmacro19408' => 'vma', 'vmacro21899' => 'vma', 'vmacro21900' => 'vma', 'vmacro21901' => 'vma', 'VMungo0251G0490' => 'vmu', 'VMungo0251G1748' => 'vmu', 'VMungo1309G0421' => 'vmu', 'Zm00001eb086500' => 'zma', 'Zm00001eb150680' => 'zma', 'Zm00001eb162330' => 'zma', 'Zm00001eb203130' => 'zma', 'Zm00001eb369480' => 'zma', 'Zm00001eb382340' => 'zma', 'Zm00001eb416360' => 'zma' ) $gf_id = 'HOM05D000902' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000902' ) $data_identifier = 'HOM05D000902' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 13, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 10, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 6, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 9, 'hma' => (int) 12, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 4, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 6, 'ppa' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 6, 'rch' => (int) 9, 'rsi' => (int) 9, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 12, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 3, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416360' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000902', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '663', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02470' => 'bna', 'A01p16260' => 'bna', 'A02p01680' => 'bna', 'A03p16600' => 'bna', 'A03p55660' => 'bna', 'A03p64160' => 'bna', 'A03p64170' => 'bna', 'A08p31900' => 'bna', 'A09p59530' => 'bna', 'A10p08230' => 'bna', 'A10p25090' => 'bna', 'Aa31LG3G7100' => 'aar', 'Aa31LG3G7110' => 'aar', 'Aa31LG6G13160' => 'aar', 'Aa31LG7G10770' => 'aar', 'Aa31LG7G3830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2723' => 'aag', 'Actinidia08045' => 'ach', 'Actinidia08888' => 'ach', 'Actinidia18333' => 'ach', 'Actinidia19334' => 'ach', 'Actinidia25552' => 'ach', 'Actinidia26089' => 'ach', 'Actinidia30615' => 'ach', 'Actinidia30616' => 'ach', 'Actinidia33083' => 'ach', 'Actinidia35762' => 'ach', 'Ah.02g110620' => 'amhyb', 'Ah.11g046390' => 'amhyb', 'AL1G31670' => 'aly', 'AL6G23730' => 'aly', 'AL7G14740' => 'aly', 'AL7G14750' => 'aly', 'AL7G14760' => 'aly', 'AL7G28220' => 'aly', 'AL8G24940' => 'aly', 'Aqoxy3G01665' => 'aox', 'Aqoxy3G02853' => 'aox', 'Aqoxy5G01513' => 'aox', 'Aqoxy5G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8SKA4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ75LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKDA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0LJZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7REX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZP4YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWX7I5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2QKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS0L9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPCD8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q161UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC7XCF' => 'arhy', 'AT1G19100' => 'ath', 'AT4G24970' => 'ath', 'AT4G36270' => 'ath', 'AT4G36280' => 'ath', 'AT4G36290' => 'ath', 'AT5G13130' => 'ath', 'AT5G50780' => 'ath', 'ATR0582G266' => 'atr', 'ATR0661G195' => 'atr', 'ATR1152G031' => 'atr', 'Atru.chr11.2382' => 'acertr', 'Atru.chr12.2337' => 'acertr', 'Atru.chr3.744' => 'acertr', 'Atru.chr6.1870' => 'acertr', 'Atru.chr9.2515' => 'acertr', 'AUR62004120' => 'cqu', 'AUR62005667' => 'cqu', 'AUR62007634' => 'cqu', 'AUR62008186' => 'cqu', 'AUR62008187' => 'cqu', 'AUR62008188' => 'cqu', 'AUR62027954' => 'cqu', 'AUR62028766' => 'cqu', 'AUR62028767' => 'cqu', 'AUR62028768' => 'cqu', 'AUR62028886' => 'cqu', 'AUR62029563' => 'cqu', 'AUR62038832' => 'cqu', 'BcaB01g04149' => 'bca', 'BcaB03g12940' => 'bca', 'BcaB03g13090' => 'bca', 'BcaB03g14466' => 'bca', 'BcaB05g24035' => 'bca', 'BcaC01g06050' => 'bca', 'BcaC04g19148' => 'bca', 'BcaC04g20761' => 'bca', 'BcaC06g32845' => 'bca', 'BcaC07g41274' => 'bca', 'BcaC09g50827' => 'bca', 'BcaNung00741' => 'bca', 'BcaNung00742' => 'bca', 'BcaNung01859' => 'bca', 'BcaNung03985' => 'bca', 'BcaNung03989' => 'bca', 'BcaNung05661' => 'bca', 'BolC1t00257H' => 'bol', 'BolC1t01956H' => 'bol', 'BolC2t06534H' => 'bol', 'BolC3t14334H' => 'bol', 'BolC5t30451H' => 'bol', 'BolC7t45880H' => 'bol', 'BolC7t46586H' => 'bol', 'BolC8t49301H' => 'bol', 'BolC8t51837H' => 'bol', 'BolC9t56822H' => 'bol', 'BolC9t59235H' => 'bol', 'BraA01t00234Z' => 'bra', 'BraA01t01563Z' => 'bra', 'BraA02t05147Z' => 'bra', 'BraA03t10947Z' => 'bra', 'BraA03t14633Z' => 'bra', 'BraA08t35112Z' => 'bra', 'BraA09t41330Z' => 'bra', 'BraA10t44570Z' => 'bra', 'C01p02670' => 'bna', 'C01p20260' => 'bna', 'C02p05890' => 'bna', 'C03p19530' => 'bna', 'C05p17470' => 'bna', 'C07p53900' => 'bna', 'C07p61630' => 'bna', 'C08p16800' => 'bna', 'C08p42810' => 'bna', 'C09p39480' => 'bna', 'C09p63980' => 'bna', 'CAN.G1001.7' => 'can', 'CAN.G1034.55' => 'can', 'CAN.G143.7' => 'can', 'CAN.G3340.1' => 'can', 'CAN.G358.19' => 'can', 'CAN.G373.2' => 'can', 'CAN.G674.16' => 'can', 'CAN.G674.17' => 'can', 'CAN.G674.18' => 'can', 'CAN.G732.2' => 'can', 'CAN.G732.3' => 'can', 'CAN.G993.39' => 'can', 'CANSAT01G2052' => 'cansat', 'CANSAT80G0070' => 'cansat', 'CANSAT80G0483' => 'cansat', 'CANSAT80G0625' => 'cansat', 'CARHR019690' => 'chi', 'CARHR080280' => 'chi', 'CARHR152750' => 'chi', 'CARHR152760' => 'chi', 'CARHR152770' => 'chi', 'CARHR200340' => 'chi', 'CARHR232370' => 'chi', 'CARHR244670' => 'chi', 'CARHR244680' => 'chi', 'CARHR257520' => 'chi', 'Carub.0001s1872' => 'cru', 'Carub.0006s1130' => 'cru', 'Carub.0007s0396' => 'cru', 'Carub.0007s0397' => 'cru', 'Carub.0007s1608' => 'cru', 'Carub.0008s1068' => 'cru', 'Carub.0008s1077' => 'cru', 'Ca_16158_v3' => 'car', 'Ca_17571_v3' => 'car', 'Ca_21936_v3' => 'car', 'Ca_22350_v3' => 'car', 'CBR_g22445' => 'cbr', 'CBR_g26290' => 'cbr', 'Cc04_g09610' => 'ccan', 'Cc04_g12280' => 'ccan', 'Cc07_g10230' => 'ccan', 'CDE02G0093' => 'cde', 'CDE02G0701' => 'cde', 'CDE04G1050' => 'cde', 'CDE05G1833' => 'cde', 'CDE05G3058' => 'cde', 'CDE05G3380' => 'cde', 'CDE06G0536' => 'cde', 'Cfa006923' => 'cfa', 'Cfa009402' => 'cfa', 'Cfa018751' => 'cfa', 'Cfa019164' => 'cfa', 'Cfa022935' => 'cfa', 'Ciclev10019081m.g' => 'ccl', 'Ciclev10025076m.g' => 'ccl', 'Ciclev10030712m.g' => 'ccl', 'Ciclev10033760m.g' => 'ccl', 'CiPaw.05G105600' => 'cil', 'CiPaw.08G136700' => 'cil', 'CiPaw.11G003900' => 'cil', 'CiPaw.11G023700' => 'cil', 'CiPaw.12G003700' => 'cil', 'ClCG06G017100' => 'cla', 'ClCG06G018110' => 'cla', 'ClCG07G008800' => 'cla', 'ClCG07G015330' => 'cla', 'COL.COLO4_13698' => 'col', 'COL.COLO4_16659' => 'col', 'COL.COLO4_21986' => 'col', 'COL.COLO4_24049' => 'col', 'COL.COLO4_29061' => 'col', 'COL.COLO4_29075' => 'col', 'COL.COLO4_30094' => 'col', 'Cpa.g.c33689' => 'cpa', 'Cpa.g.sc108.39' => 'cpa', 'Cpa.g.sc108.41' => 'cpa', 'Cpa.g.sc1163.1' => 'cpa', 'Cpa.g.sc4.155' => 'cpa', 'Cpa.g.sc6.194' => 'cpa', 'CsaV3_1G000340' => 'csa', 'CsaV3_1G001400' => 'csa', 'CsaV3_4G002220' => 'csa', 'CsaV3_4G005370' => 'csa', 'CSS0007487' => 'camsi', 'CSS0008066' => 'camsi', 'CSS0009120' => 'camsi', 'CSS0015512' => 'camsi', 'CSS0022409' => 'camsi', 'CSS0025358' => 'camsi', 'CSS0044547' => 'camsi', 'DCAR_013057' => 'dca', 'DCAR_015058' => 'dca', 'DCAR_016027' => 'dca', 'DCAR_017327' => 'dca', 'DCAR_020743' => 'dca', 'DCAR_026157' => 'dca', 'DCAR_032339' => 'dca', 'DCAR_032340' => 'dca', 'Dinv11200' => 'din', 'Dinv11201' => 'din', 'Dinv20631' => 'din', 'Dinv23182' => 'din', 'Dinv33466' => 'din', 'Dinv33583' => 'din', 'Dinv38565' => 'din', 'Duzib068G0200' => 'dzi', 'Duzib147G0132' => 'dzi', 'Duzib147G0635' => 'dzi', 'Duzib205G1670' => 'dzi', 'Duzib251G0606' => 'dzi', 'ECA232G3336' => 'eca', 'ECA232G3763' => 'eca', 'ECA232G4845' => 'eca', 'ECA234G1607' => 'eca', 'ECA246G0932' => 'eca', 'ECA247G0781' => 'eca', 'ECA247G1932' => 'eca', 'ECA247G2079' => 'eca', 'ECA247G3338' => 'eca', 'ECA247G4115' => 'eca', 'EL10Ac3g06552' => 'bvu', 'EL10Ac5g10721' => 'bvu', 'EL10Ac5g10722' => 'bvu', 'EL10Ac5g10723' => 'bvu', 'EL10Ac5g11361' => 'bvu', 'EL10Ac6g13553' => 'bvu', 'EL10As8g23872' => 'bvu', 'Eucgr.B00250' => 'egr', 'Eucgr.B00251' => 'egr', 'Eucgr.B03533' => 'egr', 'Eucgr.I02381' => 'egr', 'Eucgr.K02700' => 'egr', 'FAN02G0174' => 'fan', 'FAN02G3146' => 'fan', 'FAN04G1672' => 'fan', 'FAN04G2273' => 'fan', 'FAN05G2791' => 'fan', 'FAN05G4035' => 'fan', 'FAN07G0834' => 'fan', 'FAN08G1198' => 'fan', 'FAN09G4182' => 'fan', 'FAN12G0496' => 'fan', 'FAN13G1027' => 'fan', 'FAN13G2951' => 'fan', 'FAN14G0705' => 'fan', 'FAN14G0720' => 'fan', 'FAN17G0201' => 'fan', 'FAN17G2665' => 'fan', 'FAN18G1456' => 'fan', 'FAN18G1525' => 'fan', 'FAN18G3500' => 'fan', 'FAN28G2670' => 'fan', 'FvH4_1g12391' => 'fve', 'FvH4_4g23220' => 'fve', 'FvH4_5g08810' => 'fve', 'FvH4_5g28960' => 'fve', 'FvH4_6g42820' => 'fve', 'FvH4_6g51110' => 'fve', 'Glyma.02G051802' => 'gma', 'Glyma.04G185300' => 'gma', 'Glyma.05G202900' => 'gma', 'Glyma.08G010300' => 'gma', 'Glyma.16G131900' => 'gma', 'Glyma.17G087900' => 'gma', 'Gohir.A07G048600' => 'ghi', 'Gohir.A11G179000' => 'ghi', 'Gohir.A12G140900' => 'ghi', 'Gohir.A12G140950' => 'ghi', 'Gohir.A12G191700' => 'ghi', 'Gohir.A13G086300' => 'ghi', 'Gohir.D07G052900' => 'ghi', 'Gohir.D11G186600' => 'ghi', 'Gohir.D12G145575' => 'ghi', 'Gohir.D12G145650' => 'ghi', 'Gohir.D12G145725' => 'ghi', 'Gohir.D12G194050' => 'ghi', 'Gohir.D13G091800' => 'ghi', 'Gorai.001G055900' => 'gra', 'Gorai.007G198400' => 'gra', 'Gorai.008G157000' => 'gra', 'Gorai.008G157100' => 'gra', 'Gorai.008G208700' => 'gra', 'Gorai.010G138700' => 'gra', 'GSVIVG01000977001' => 'vvi', 'GSVIVG01007708001' => 'vvi', 'GSVIVG01008587001' => 'vvi', 'GSVIVG01018849001' => 'vvi', 'GSVIVG01032432001' => 'vvi', 'HanXRQChr02g0034131' => 'han', 'HanXRQChr02g0035981' => 'han', 'HanXRQChr02g0035991' => 'han', 'HanXRQChr05g0155611' => 'han', 'HanXRQChr05g0155621' => 'han', 'HanXRQChr08g0236501' => 'han', 'HanXRQChr09g0261321' => 'han', 'HanXRQChr09g0272081' => 'han', 'HanXRQChr10g0310741' => 'han', 'HanXRQChr11g0325591' => 'han', 'HanXRQChr12g0385691' => 'han', 'HanXRQChr13g0387801' => 'han', 'HanXRQChr15g0463011' => 'han', 'Haze_03826' => 'cav', 'Haze_03827' => 'cav', 'Haze_07183' => 'cav', 'Haze_07537' => 'cav', 'Haze_07539' => 'cav', 'Haze_12461' => 'cav', 'Haze_16115' => 'cav', 'Haze_16808' => 'cav', 'Haze_18531' => 'cav', 'Hma1.2p1_0046F.1_g026700' => 'hma', 'Hma1.2p1_0046F.1_g026710' => 'hma', 'Hma1.2p1_0168F.1_g074340' => 'hma', 'Hma1.2p1_0266F.1_g107030' => 'hma', 'Hma1.2p1_0266F.1_g107060' => 'hma', 'Hma1.2p1_0275F.1_g110510' => 'hma', 'Hma1.2p1_0592F.1_g185490' => 'hma', 'Hma1.2p1_0592F.1_g185500' => 'hma', 'Hma1.2p1_0592F.1_g185510' => 'hma', 'Hma1.2p1_0592F.1_g185520' => 'hma', 'Hma1.2p1_0592F.1_g185530' => 'hma', 'Hma1.2p1_0818F.1_g223450' => 'hma', 'HPP92_009708' => 'vpl', 'HPP92_009793' => 'vpl', 'HPP92_009796' => 'vpl', 'HPP92_009797' => 'vpl', 'HPP92_014940' => 'vpl', 'HPP92_014988' => 'vpl', 'Hund02463' => 'sun', 'Hund02760' => 'sun', 'Hund05071' => 'sun', 'Hund10108' => 'sun', 'Hund11204' => 'sun', 'Hund14016' => 'sun', 'Hund16464' => 'sun', 'Lalb_Chr09g0333391' => 'lal', 'Lalb_Chr11g0070461' => 'lal', 'Lalb_Chr12g0201671' => 'lal', 'Lalb_Chr13g0297161' => 'lal', 'Lj1g0002823' => 'lja', 'Lj3C1074T6' => 'lonja', 'Lj4A212T28' => 'lonja', 'Lj4g0005516' => 'lja', 'Lj4g0013705' => 'lja', 'Lj4g0027865' => 'lja', 'Lj5C92G16' => 'lonja', 'Lj5C92T12' => 'lonja', 'Lj7C596T3' => 'lonja', 'Lj9A446G59' => 'lonja', 'Lj9A482G21' => 'lonja', 'Lsat_1_v5_gn_1_28261' => 'lsa', 'Lsat_1_v5_gn_1_28281' => 'lsa', 'Lsat_1_v5_gn_1_32721' => 'lsa', 'Lsat_1_v5_gn_4_151760' => 'lsa', 'Lsat_1_v5_gn_4_2120' => 'lsa', 'Lsat_1_v5_gn_4_75761' => 'lsa', 'Lsat_1_v5_gn_5_10920' => 'lsa', 'Manes.02G099900' => 'mes', 'Manes.11G096200' => 'mes', 'Manes.12G007200' => 'mes', 'Manes.14G048300' => 'mes', 'Manes.17G114700' => 'mes', 'Mapoly0002s0070' => 'mpo', 'Mapoly0029s0099' => 'mpo', 'MBI07_g24742_MAGBIO' => 'mbi', 'MBI10_g27988_MAGBIO' => 'mbi', 'MBI11_g13057_MAGBIO' => 'mbi', 'MD02G1137200' => 'mdo', 'MD06G1137200' => 'mdo', 'MD07G1122300' => 'mdo', 'MD09G1078200' => 'mdo', 'MD13G1123700' => 'mdo', 'MD14G1151900' => 'mdo', 'MD17G1030900' => 'mdo', 'MD17G1068200' => 'mdo', 'MD17G1068600' => 'mdo', 'Medtr3g077540' => 'mtr', 'Medtr4g105530' => 'mtr', 'Medtr8g076580' => 'mtr', 'Medtr8g076590' => 'mtr', 'Medtr8g096410' => 'mtr', 'MELO3C016411.2' => 'cme', 'MELO3C017780.2' => 'cme', 'MELO3C022560.2' => 'cme', 'MELO3C026187.2' => 'cme', 'MELO3C026286.2' => 'cme', 'MELO3C032854.2' => 'cme', 'Migut.H02495' => 'egut', 'Migut.I00561' => 'egut', 'Migut.K01015' => 'egut', 'Migut.K01016' => 'egut', 'Migut.L00743' => 'egut', 'Migut.L00744' => 'egut', 'Migut.L00746' => 'egut', 'Migut.L00798' => 'egut', 'Migut.L00799' => 'egut', 'Migut.N02096' => 'egut', 'MSTRG.11259' => 'ama', 'MSTRG.23142' => 'ama', 'MSTRG.2499' => 'ama', 'Nitab4.5_0000003g0730' => 'nta', 'Nitab4.5_0000137g0020' => 'nta', 'Nitab4.5_0000721g0210' => 'nta', 'Nitab4.5_0000723g0050' => 'nta', 'Nitab4.5_0000913g0070' => 'nta', 'Nitab4.5_0001332g0040' => 'nta', 'Nitab4.5_0001771g0050' => 'nta', 'Nitab4.5_0001918g0050' => 'nta', 'Nitab4.5_0002686g0030' => 'nta', 'Nitab4.5_0003156g0020' => 'nta', 'Nitab4.5_0003383g0040' => 'nta', 'Nitab4.5_0003918g0010' => 'nta', 'Nitab4.5_0006760g0010' => 'nta', 'Nn1g05981' => 'nnu', 'Nn1g06288' => 'nnu', 'Nn3g16371' => 'nnu', 'Nn3g16786' => 'nnu', 'Nn4g22232' => 'nnu', 'Oeu005144.1' => 'oeu', 'Oeu005145.1' => 'oeu', 'Oeu011348.1' => 'oeu', 'Oeu016415.1' => 'oeu', 'Oeu023501.1' => 'oeu', 'Oeu044473.1' => 'oeu', 'Oeu048892.2' => 'oeu', 'Os01g0549200' => 'osa', 'Os02g0469300' => 'osa', 'Os04g0311100' => 'osa', 'Os06g0474900' => 'osa', 'Os10g0181700' => 'osa', 'Os11g0454800' => 'osa', 'Peaxi162Scf00037g00714' => 'pax', 'Peaxi162Scf00084g01217' => 'pax', 'Peaxi162Scf00257g00217' => 'pax', 'Peaxi162Scf00516g00215' => 'pax', 'Peaxi162Scf00689g00123' => 'pax', 'PGR044G2719' => 'pgr', 'PGR083G1360' => 'pgr', 'PGR102G2849' => 'pgr', 'PGR119G2534' => 'pgr', 'PGSC0003DMG400003538' => 'stu', 'PGSC0003DMG400028138' => 'stu', 'PGSC0003DMG400031732' => 'stu', 'PGSC0003DMG400038165' => 'stu', 'Phvul.002G284600' => 'pvu', 'Phvul.003G258200' => 'pvu', 'Phvul.009G176500' => 'pvu', 'Potri.003G167201' => 'ptr', 'Potri.005G118400' => 'ptr', 'Potri.012G089000' => 'ptr', 'Potri.012G102800' => 'ptr', 'Potri.015G079400' => 'ptr', 'Potri.015G100900' => 'ptr', 'Pp3c14_9810' => 'ppa', 'Pp3c15_10450' => 'ppa', 'Pp3c20_19150' => 'ppa', 'Pp3c23_12740' => 'ppa', 'Pp3c23_6310' => 'ppa', 'Pp3c24_3720' => 'ppa', 'Pp3c27_2580' => 'ppa', 'Pp3c9_8990' => 'ppa', 'PRCOL_00002854' => 'pco', 'Prupe.1G221200' => 'ppe', 'Prupe.3G289000' => 'ppe', 'Prupe.5G147000' => 'ppe', 'Prupe.6G157300' => 'ppe', 'Prupe.7G163400' => 'ppe', 'Psat0s2177g0040' => 'psa', 'Psat3g174760' => 'psa', 'Psat3g192160' => 'psa', 'Psat4g058520' => 'psa', 'Psat4g096840' => 'psa', 'Psat7g037320' => 'psa', 'PSO017G1274' => 'pso', 'PSO017G5166' => 'pso', 'PSO063G4558' => 'pso', 'PSO170G4458' => 'pso', 'PSO170G5005' => 'pso', 'PSO210G6156' => 'pso', 'PSO210G6635' => 'pso', 'PSO210G7397' => 'pso', 'PSO210G7700' => 'pso', 'PSO455G0035' => 'pso', 'PSO455G0180' => 'pso', 'PSO478G4515' => 'pso', 'PSO832G1305' => 'pso', 'PSO832G3489' => 'pso', 'QL02p075247' => 'qlo', 'QL03p051148' => 'qlo', 'QL05p010313' => 'qlo', 'QL06p034627' => 'qlo', 'QL10p001889' => 'qlo', 'QL10p010846' => 'qlo', 'RcHm_v2.0_Chr1g0350621' => 'rch', 'RcHm_v2.0_Chr1g0350641' => 'rch', 'RcHm_v2.0_Chr2g0092891' => 'rch', 'RcHm_v2.0_Chr2g0100251' => 'rch', 'RcHm_v2.0_Chr2g0158661' => 'rch', 'RcHm_v2.0_Chr2g0172741' => 'rch', 'RcHm_v2.0_Chr4g0429571' => 'rch', 'RcHm_v2.0_Chr5g0042471' => 'rch', 'RcHm_v2.0_Chr7g0189451' => 'rch', 'Rhsim08G0052000' => 'rsi', 'Rhsim08G0174400' => 'rsi', 'Rhsim08G0193200' => 'rsi', 'Rhsim10G0214800' => 'rsi', 'Rhsim10G0214900' => 'rsi', 'Rhsim10G0215000' => 'rsi', 'Rhsim12G0022900' => 'rsi', 'Rhsim12G0177500' => 'rsi', 'Rhsim12G0177700' => 'rsi', 'Sabra03G0122600' => 'sbr', 'Sabra05G0097400' => 'sbr', 'Sabra12G0064100' => 'sbr', 'Sabra15G0121300' => 'sbr', 'SalBow2G0642' => 'sbo', 'SalBow5G2667' => 'sbo', 'SalBow5G4873' => 'sbo', 'SalBow8G2395' => 'sbo', 'Sc03g0003290' => 'sci', 'Sc10g0010130' => 'sci', 'Sc22g0003650' => 'sci', 'Sed0001603' => 'sed', 'Sed0004259' => 'sed', 'Sed0006789' => 'sed', 'Sed0011838' => 'sed', 'Sed0012964' => 'sed', 'Sed0016383' => 'sed', 'Sed0019010' => 'sed', 'Sed0020188' => 'sed', 'SEGI_04702' => 'sgi', 'SEGI_17231' => 'sgi', 'SEGI_18877' => 'sgi', 'SEGI_25196' => 'sgi', 'SEGI_25515' => 'sgi', 'SEGI_28445' => 'sgi', 'SEGI_37452' => 'sgi', 'SGA_v2.0_scaffold188G40336' => 'sas', 'SGA_v2.0_scaffold228G43247' => 'sas', 'SGA_v2.0_scaffold280G46853' => 'sas', 'SGA_v2.0_scaffold34G13808' => 'sas', 'SGA_v2.0_scaffold40G15576' => 'sas', 'SGA_v2.0_scaffold611G53188' => 'sas', 'SGA_v2.0_scaffold78G25461' => 'sas', 'SGA_v2.0_scaffold90G27888' => 'sas', 'SHI08601' => 'shi', 'SHI08606' => 'shi', 'SHI17117' => 'shi', 'SHI17119' => 'shi', 'SMO118G0201' => 'smo', 'SMO169G0247' => 'smo', 'SMO176G0006' => 'smo', 'SMO176G0015' => 'smo', 'SMO202G0006' => 'smo', 'SMO240G0050' => 'smo', 'SMO286G0009' => 'smo', 'SMO338G0033' => 'smo', 'SMO356G0533' => 'smo', 'SMO364G0382' => 'smo', 'SMO367G0166' => 'smo', 'SMO367G1098' => 'smo', 'Solyc01g009920.3' => 'sly', 'Solyc01g099300.3' => 'sly', 'Solyc02g084700.3' => 'sly', 'Solyc03g097520.3' => 'sly', 'Solyc06g071580.3' => 'sly', 'Solyc10g081760.3' => 'sly', 'Sopen01g005480' => 'spe', 'Sopen01g042850' => 'spe', 'Sopen02g029370' => 'spe', 'Sopen03g028280' => 'spe', 'Sopen06g027870' => 'spe', 'Sopen10g032270' => 'spe', 'Sp5g18180' => 'spa', 'Sp6g12880' => 'spa', 'Sp6g30850' => 'spa', 'Sp7g22960' => 'spa', 'Sp7g34010' => 'spa', 'SpUn1326_0010' => 'spa', 'TAR371G0242' => 'tar', 'TAR622G0638' => 'tar', 'TAR628G1548' => 'tar', 'TAR629G1079' => 'tar', 'TAR629G3413' => 'tar', 'THA.LOC104804249' => 'tha', 'THA.LOC104808315' => 'tha', 'THA.LOC104809238' => 'tha', 'THA.LOC104825484' => 'tha', 'Thecc.01G025500' => 'tca', 'Thecc.03G015800' => 'tca', 'Thecc.03G018000' => 'tca', 'Thecc.03G134800' => 'tca', 'Thecc.04G014700' => 'tca', 'Thhalv10006991m.g' => 'esa', 'Thhalv10012707m.g' => 'esa', 'Thhalv10015739m.g' => 'esa', 'Thhalv10024553m.g' => 'esa', 'Thhalv10024673m.g' => 'esa', 'Thhalv10029187m.g' => 'esa', 'TPR.G12971' => 'tpr', 'TPR.G29396' => 'tpr', 'TPR.G33376' => 'tpr', 'TPR.G35508' => 'tpr', 'TPR.G35516' => 'tpr', 'TPR.G37317' => 'tpr', 'TPR.G37389' => 'tpr', 'TPR.G37523' => 'tpr', 'TPR.G559' => 'tpr', 'TWI14G0070' => 'twi', 'TWI14G0729' => 'twi', 'TWI18G0596' => 'twi', 'TWI39G0780' => 'twi', 'TWI39G0850' => 'twi', 'TWI73G1052' => 'twi', 'unitig_52.g17485' => 'ugi', 'unitig_61.g26355' => 'ugi', 'vmacro01040' => 'vma', 'vmacro16731' => 'vma', 'vmacro18270' => 'vma', 'vmacro19142' => 'vma', 'vmacro19407' => 'vma', 'vmacro19408' => 'vma', 'vmacro21899' => 'vma', 'vmacro21900' => 'vma', 'vmacro21901' => 'vma', 'VMungo0251G0490' => 'vmu', 'VMungo0251G1748' => 'vmu', 'VMungo1309G0421' => 'vmu', 'Zm00001eb086500' => 'zma', 'Zm00001eb150680' => 'zma', 'Zm00001eb162330' => 'zma', 'Zm00001eb203130' => 'zma', 'Zm00001eb369480' => 'zma', 'Zm00001eb382340' => 'zma', 'Zm00001eb416360' => 'zma' ), 'gf_id' => 'HOM05D000902', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000902' ), 'data_identifier' => 'HOM05D000902', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000902', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '663', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02470' => 'bna', 'A01p16260' => 'bna', 'A02p01680' => 'bna', 'A03p16600' => 'bna', 'A03p55660' => 'bna', 'A03p64160' => 'bna', 'A03p64170' => 'bna', 'A08p31900' => 'bna', 'A09p59530' => 'bna', 'A10p08230' => 'bna', 'A10p25090' => 'bna', 'Aa31LG3G7100' => 'aar', 'Aa31LG3G7110' => 'aar', 'Aa31LG6G13160' => 'aar', 'Aa31LG7G10770' => 'aar', 'Aa31LG7G3830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2723' => 'aag', 'Actinidia08045' => 'ach', 'Actinidia08888' => 'ach', 'Actinidia18333' => 'ach', 'Actinidia19334' => 'ach', 'Actinidia25552' => 'ach', 'Actinidia26089' => 'ach', 'Actinidia30615' => 'ach', 'Actinidia30616' => 'ach', 'Actinidia33083' => 'ach', 'Actinidia35762' => 'ach', 'Ah.02g110620' => 'amhyb', 'Ah.11g046390' => 'amhyb', 'AL1G31670' => 'aly', 'AL6G23730' => 'aly', 'AL7G14740' => 'aly', 'AL7G14750' => 'aly', 'AL7G14760' => 'aly', 'AL7G28220' => 'aly', 'AL8G24940' => 'aly', 'Aqoxy3G01665' => 'aox', 'Aqoxy3G02853' => 'aox', 'Aqoxy5G01513' => 'aox', 'Aqoxy5G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8SKA4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ75LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKDA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0LJZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7REX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZP4YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWX7I5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2QKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS0L9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPCD8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q161UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC7XCF' => 'arhy', 'AT1G19100' => 'ath', 'AT4G24970' => 'ath', 'AT4G36270' => 'ath', 'AT4G36280' => 'ath', 'AT4G36290' => 'ath', 'AT5G13130' => 'ath', 'AT5G50780' => 'ath', 'ATR0582G266' => 'atr', 'ATR0661G195' => 'atr', 'ATR1152G031' => 'atr', 'Atru.chr11.2382' => 'acertr', 'Atru.chr12.2337' => 'acertr', 'Atru.chr3.744' => 'acertr', 'Atru.chr6.1870' => 'acertr', 'Atru.chr9.2515' => 'acertr', 'AUR62004120' => 'cqu', 'AUR62005667' => 'cqu', 'AUR62007634' => 'cqu', 'AUR62008186' => 'cqu', 'AUR62008187' => 'cqu', 'AUR62008188' => 'cqu', 'AUR62027954' => 'cqu', 'AUR62028766' => 'cqu', 'AUR62028767' => 'cqu', 'AUR62028768' => 'cqu', 'AUR62028886' => 'cqu', 'AUR62029563' => 'cqu', 'AUR62038832' => 'cqu', 'BcaB01g04149' => 'bca', 'BcaB03g12940' => 'bca', 'BcaB03g13090' => 'bca', 'BcaB03g14466' => 'bca', 'BcaB05g24035' => 'bca', 'BcaC01g06050' => 'bca', 'BcaC04g19148' => 'bca', 'BcaC04g20761' => 'bca', 'BcaC06g32845' => 'bca', 'BcaC07g41274' => 'bca', 'BcaC09g50827' => 'bca', 'BcaNung00741' => 'bca', 'BcaNung00742' => 'bca', 'BcaNung01859' => 'bca', 'BcaNung03985' => 'bca', 'BcaNung03989' => 'bca', 'BcaNung05661' => 'bca', 'BolC1t00257H' => 'bol', 'BolC1t01956H' => 'bol', 'BolC2t06534H' => 'bol', 'BolC3t14334H' => 'bol', 'BolC5t30451H' => 'bol', 'BolC7t45880H' => 'bol', 'BolC7t46586H' => 'bol', 'BolC8t49301H' => 'bol', 'BolC8t51837H' => 'bol', 'BolC9t56822H' => 'bol', 'BolC9t59235H' => 'bol', 'BraA01t00234Z' => 'bra', 'BraA01t01563Z' => 'bra', 'BraA02t05147Z' => 'bra', 'BraA03t10947Z' => 'bra', 'BraA03t14633Z' => 'bra', 'BraA08t35112Z' => 'bra', 'BraA09t41330Z' => 'bra', 'BraA10t44570Z' => 'bra', 'C01p02670' => 'bna', 'C01p20260' => 'bna', 'C02p05890' => 'bna', 'C03p19530' => 'bna', 'C05p17470' => 'bna', 'C07p53900' => 'bna', 'C07p61630' => 'bna', 'C08p16800' => 'bna', 'C08p42810' => 'bna', 'C09p39480' => 'bna', 'C09p63980' => 'bna', 'CAN.G1001.7' => 'can', 'CAN.G1034.55' => 'can', 'CAN.G143.7' => 'can', 'CAN.G3340.1' => 'can', 'CAN.G358.19' => 'can', 'CAN.G373.2' => 'can', 'CAN.G674.16' => 'can', 'CAN.G674.17' => 'can', 'CAN.G674.18' => 'can', 'CAN.G732.2' => 'can', 'CAN.G732.3' => 'can', 'CAN.G993.39' => 'can', 'CANSAT01G2052' => 'cansat', 'CANSAT80G0070' => 'cansat', 'CANSAT80G0483' => 'cansat', 'CANSAT80G0625' => 'cansat', 'CARHR019690' => 'chi', 'CARHR080280' => 'chi', 'CARHR152750' => 'chi', 'CARHR152760' => 'chi', 'CARHR152770' => 'chi', 'CARHR200340' => 'chi', 'CARHR232370' => 'chi', 'CARHR244670' => 'chi', 'CARHR244680' => 'chi', 'CARHR257520' => 'chi', 'Carub.0001s1872' => 'cru', 'Carub.0006s1130' => 'cru', 'Carub.0007s0396' => 'cru', 'Carub.0007s0397' => 'cru', 'Carub.0007s1608' => 'cru', 'Carub.0008s1068' => 'cru', 'Carub.0008s1077' => 'cru', 'Ca_16158_v3' => 'car', 'Ca_17571_v3' => 'car', 'Ca_21936_v3' => 'car', 'Ca_22350_v3' => 'car', 'CBR_g22445' => 'cbr', 'CBR_g26290' => 'cbr', 'Cc04_g09610' => 'ccan', 'Cc04_g12280' => 'ccan', 'Cc07_g10230' => 'ccan', 'CDE02G0093' => 'cde', 'CDE02G0701' => 'cde', 'CDE04G1050' => 'cde', 'CDE05G1833' => 'cde', 'CDE05G3058' => 'cde', 'CDE05G3380' => 'cde', 'CDE06G0536' => 'cde', 'Cfa006923' => 'cfa', 'Cfa009402' => 'cfa', 'Cfa018751' => 'cfa', 'Cfa019164' => 'cfa', 'Cfa022935' => 'cfa', 'Ciclev10019081m.g' => 'ccl', 'Ciclev10025076m.g' => 'ccl', 'Ciclev10030712m.g' => 'ccl', 'Ciclev10033760m.g' => 'ccl', 'CiPaw.05G105600' => 'cil', 'CiPaw.08G136700' => 'cil', 'CiPaw.11G003900' => 'cil', 'CiPaw.11G023700' => 'cil', 'CiPaw.12G003700' => 'cil', 'ClCG06G017100' => 'cla', 'ClCG06G018110' => 'cla', 'ClCG07G008800' => 'cla', 'ClCG07G015330' => 'cla', 'COL.COLO4_13698' => 'col', 'COL.COLO4_16659' => 'col', 'COL.COLO4_21986' => 'col', 'COL.COLO4_24049' => 'col', 'COL.COLO4_29061' => 'col', 'COL.COLO4_29075' => 'col', 'COL.COLO4_30094' => 'col', 'Cpa.g.c33689' => 'cpa', 'Cpa.g.sc108.39' => 'cpa', 'Cpa.g.sc108.41' => 'cpa', 'Cpa.g.sc1163.1' => 'cpa', 'Cpa.g.sc4.155' => 'cpa', 'Cpa.g.sc6.194' => 'cpa', 'CsaV3_1G000340' => 'csa', 'CsaV3_1G001400' => 'csa', 'CsaV3_4G002220' => 'csa', 'CsaV3_4G005370' => 'csa', 'CSS0007487' => 'camsi', 'CSS0008066' => 'camsi', 'CSS0009120' => 'camsi', 'CSS0015512' => 'camsi', 'CSS0022409' => 'camsi', 'CSS0025358' => 'camsi', 'CSS0044547' => 'camsi', 'DCAR_013057' => 'dca', 'DCAR_015058' => 'dca', 'DCAR_016027' => 'dca', 'DCAR_017327' => 'dca', 'DCAR_020743' => 'dca', 'DCAR_026157' => 'dca', 'DCAR_032339' => 'dca', 'DCAR_032340' => 'dca', 'Dinv11200' => 'din', 'Dinv11201' => 'din', 'Dinv20631' => 'din', 'Dinv23182' => 'din', 'Dinv33466' => 'din', 'Dinv33583' => 'din', 'Dinv38565' => 'din', 'Duzib068G0200' => 'dzi', 'Duzib147G0132' => 'dzi', 'Duzib147G0635' => 'dzi', 'Duzib205G1670' => 'dzi', 'Duzib251G0606' => 'dzi', 'ECA232G3336' => 'eca', 'ECA232G3763' => 'eca', 'ECA232G4845' => 'eca', 'ECA234G1607' => 'eca', 'ECA246G0932' => 'eca', 'ECA247G0781' => 'eca', 'ECA247G1932' => 'eca', 'ECA247G2079' => 'eca', 'ECA247G3338' => 'eca', 'ECA247G4115' => 'eca', 'EL10Ac3g06552' => 'bvu', 'EL10Ac5g10721' => 'bvu', 'EL10Ac5g10722' => 'bvu', 'EL10Ac5g10723' => 'bvu', 'EL10Ac5g11361' => 'bvu', 'EL10Ac6g13553' => 'bvu', 'EL10As8g23872' => 'bvu', 'Eucgr.B00250' => 'egr', 'Eucgr.B00251' => 'egr', 'Eucgr.B03533' => 'egr', 'Eucgr.I02381' => 'egr', 'Eucgr.K02700' => 'egr', 'FAN02G0174' => 'fan', 'FAN02G3146' => 'fan', 'FAN04G1672' => 'fan', 'FAN04G2273' => 'fan', 'FAN05G2791' => 'fan', 'FAN05G4035' => 'fan', 'FAN07G0834' => 'fan', 'FAN08G1198' => 'fan', 'FAN09G4182' => 'fan', 'FAN12G0496' => 'fan', 'FAN13G1027' => 'fan', 'FAN13G2951' => 'fan', 'FAN14G0705' => 'fan', 'FAN14G0720' => 'fan', 'FAN17G0201' => 'fan', 'FAN17G2665' => 'fan', 'FAN18G1456' => 'fan', 'FAN18G1525' => 'fan', 'FAN18G3500' => 'fan', 'FAN28G2670' => 'fan', 'FvH4_1g12391' => 'fve', 'FvH4_4g23220' => 'fve', 'FvH4_5g08810' => 'fve', 'FvH4_5g28960' => 'fve', 'FvH4_6g42820' => 'fve', 'FvH4_6g51110' => 'fve', 'Glyma.02G051802' => 'gma', 'Glyma.04G185300' => 'gma', 'Glyma.05G202900' => 'gma', 'Glyma.08G010300' => 'gma', 'Glyma.16G131900' => 'gma', 'Glyma.17G087900' => 'gma', 'Gohir.A07G048600' => 'ghi', 'Gohir.A11G179000' => 'ghi', 'Gohir.A12G140900' => 'ghi', 'Gohir.A12G140950' => 'ghi', 'Gohir.A12G191700' => 'ghi', 'Gohir.A13G086300' => 'ghi', 'Gohir.D07G052900' => 'ghi', 'Gohir.D11G186600' => 'ghi', 'Gohir.D12G145575' => 'ghi', 'Gohir.D12G145650' => 'ghi', 'Gohir.D12G145725' => 'ghi', 'Gohir.D12G194050' => 'ghi', 'Gohir.D13G091800' => 'ghi', 'Gorai.001G055900' => 'gra', 'Gorai.007G198400' => 'gra', 'Gorai.008G157000' => 'gra', 'Gorai.008G157100' => 'gra', 'Gorai.008G208700' => 'gra', 'Gorai.010G138700' => 'gra', 'GSVIVG01000977001' => 'vvi', 'GSVIVG01007708001' => 'vvi', 'GSVIVG01008587001' => 'vvi', 'GSVIVG01018849001' => 'vvi', 'GSVIVG01032432001' => 'vvi', 'HanXRQChr02g0034131' => 'han', 'HanXRQChr02g0035981' => 'han', 'HanXRQChr02g0035991' => 'han', 'HanXRQChr05g0155611' => 'han', 'HanXRQChr05g0155621' => 'han', 'HanXRQChr08g0236501' => 'han', 'HanXRQChr09g0261321' => 'han', 'HanXRQChr09g0272081' => 'han', 'HanXRQChr10g0310741' => 'han', 'HanXRQChr11g0325591' => 'han', 'HanXRQChr12g0385691' => 'han', 'HanXRQChr13g0387801' => 'han', 'HanXRQChr15g0463011' => 'han', 'Haze_03826' => 'cav', 'Haze_03827' => 'cav', 'Haze_07183' => 'cav', 'Haze_07537' => 'cav', 'Haze_07539' => 'cav', 'Haze_12461' => 'cav', 'Haze_16115' => 'cav', 'Haze_16808' => 'cav', 'Haze_18531' => 'cav', 'Hma1.2p1_0046F.1_g026700' => 'hma', 'Hma1.2p1_0046F.1_g026710' => 'hma', 'Hma1.2p1_0168F.1_g074340' => 'hma', 'Hma1.2p1_0266F.1_g107030' => 'hma', 'Hma1.2p1_0266F.1_g107060' => 'hma', 'Hma1.2p1_0275F.1_g110510' => 'hma', 'Hma1.2p1_0592F.1_g185490' => 'hma', 'Hma1.2p1_0592F.1_g185500' => 'hma', 'Hma1.2p1_0592F.1_g185510' => 'hma', 'Hma1.2p1_0592F.1_g185520' => 'hma', 'Hma1.2p1_0592F.1_g185530' => 'hma', 'Hma1.2p1_0818F.1_g223450' => 'hma', 'HPP92_009708' => 'vpl', 'HPP92_009793' => 'vpl', 'HPP92_009796' => 'vpl', 'HPP92_009797' => 'vpl', 'HPP92_014940' => 'vpl', 'HPP92_014988' => 'vpl', 'Hund02463' => 'sun', 'Hund02760' => 'sun', 'Hund05071' => 'sun', 'Hund10108' => 'sun', 'Hund11204' => 'sun', 'Hund14016' => 'sun', 'Hund16464' => 'sun', 'Lalb_Chr09g0333391' => 'lal', 'Lalb_Chr11g0070461' => 'lal', 'Lalb_Chr12g0201671' => 'lal', 'Lalb_Chr13g0297161' => 'lal', 'Lj1g0002823' => 'lja', 'Lj3C1074T6' => 'lonja', 'Lj4A212T28' => 'lonja', 'Lj4g0005516' => 'lja', 'Lj4g0013705' => 'lja', 'Lj4g0027865' => 'lja', 'Lj5C92G16' => 'lonja', 'Lj5C92T12' => 'lonja', 'Lj7C596T3' => 'lonja', 'Lj9A446G59' => 'lonja', 'Lj9A482G21' => 'lonja', 'Lsat_1_v5_gn_1_28261' => 'lsa', 'Lsat_1_v5_gn_1_28281' => 'lsa', 'Lsat_1_v5_gn_1_32721' => 'lsa', 'Lsat_1_v5_gn_4_151760' => 'lsa', 'Lsat_1_v5_gn_4_2120' => 'lsa', 'Lsat_1_v5_gn_4_75761' => 'lsa', 'Lsat_1_v5_gn_5_10920' => 'lsa', 'Manes.02G099900' => 'mes', 'Manes.11G096200' => 'mes', 'Manes.12G007200' => 'mes', 'Manes.14G048300' => 'mes', 'Manes.17G114700' => 'mes', 'Mapoly0002s0070' => 'mpo', 'Mapoly0029s0099' => 'mpo', 'MBI07_g24742_MAGBIO' => 'mbi', 'MBI10_g27988_MAGBIO' => 'mbi', 'MBI11_g13057_MAGBIO' => 'mbi', 'MD02G1137200' => 'mdo', 'MD06G1137200' => 'mdo', 'MD07G1122300' => 'mdo', 'MD09G1078200' => 'mdo', 'MD13G1123700' => 'mdo', 'MD14G1151900' => 'mdo', 'MD17G1030900' => 'mdo', 'MD17G1068200' => 'mdo', 'MD17G1068600' => 'mdo', 'Medtr3g077540' => 'mtr', 'Medtr4g105530' => 'mtr', 'Medtr8g076580' => 'mtr', 'Medtr8g076590' => 'mtr', 'Medtr8g096410' => 'mtr', 'MELO3C016411.2' => 'cme', 'MELO3C017780.2' => 'cme', 'MELO3C022560.2' => 'cme', 'MELO3C026187.2' => 'cme', 'MELO3C026286.2' => 'cme', 'MELO3C032854.2' => 'cme', 'Migut.H02495' => 'egut', 'Migut.I00561' => 'egut', 'Migut.K01015' => 'egut', 'Migut.K01016' => 'egut', 'Migut.L00743' => 'egut', 'Migut.L00744' => 'egut', 'Migut.L00746' => 'egut', 'Migut.L00798' => 'egut', 'Migut.L00799' => 'egut', 'Migut.N02096' => 'egut', 'MSTRG.11259' => 'ama', 'MSTRG.23142' => 'ama', 'MSTRG.2499' => 'ama', 'Nitab4.5_0000003g0730' => 'nta', 'Nitab4.5_0000137g0020' => 'nta', 'Nitab4.5_0000721g0210' => 'nta', 'Nitab4.5_0000723g0050' => 'nta', 'Nitab4.5_0000913g0070' => 'nta', 'Nitab4.5_0001332g0040' => 'nta', 'Nitab4.5_0001771g0050' => 'nta', 'Nitab4.5_0001918g0050' => 'nta', 'Nitab4.5_0002686g0030' => 'nta', 'Nitab4.5_0003156g0020' => 'nta', 'Nitab4.5_0003383g0040' => 'nta', 'Nitab4.5_0003918g0010' => 'nta', 'Nitab4.5_0006760g0010' => 'nta', 'Nn1g05981' => 'nnu', 'Nn1g06288' => 'nnu', 'Nn3g16371' => 'nnu', 'Nn3g16786' => 'nnu', 'Nn4g22232' => 'nnu', 'Oeu005144.1' => 'oeu', 'Oeu005145.1' => 'oeu', 'Oeu011348.1' => 'oeu', 'Oeu016415.1' => 'oeu', 'Oeu023501.1' => 'oeu', 'Oeu044473.1' => 'oeu', 'Oeu048892.2' => 'oeu', 'Os01g0549200' => 'osa', 'Os02g0469300' => 'osa', 'Os04g0311100' => 'osa', 'Os06g0474900' => 'osa', 'Os10g0181700' => 'osa', 'Os11g0454800' => 'osa', 'Peaxi162Scf00037g00714' => 'pax', 'Peaxi162Scf00084g01217' => 'pax', 'Peaxi162Scf00257g00217' => 'pax', 'Peaxi162Scf00516g00215' => 'pax', 'Peaxi162Scf00689g00123' => 'pax', 'PGR044G2719' => 'pgr', 'PGR083G1360' => 'pgr', 'PGR102G2849' => 'pgr', 'PGR119G2534' => 'pgr', 'PGSC0003DMG400003538' => 'stu', 'PGSC0003DMG400028138' => 'stu', 'PGSC0003DMG400031732' => 'stu', 'PGSC0003DMG400038165' => 'stu', 'Phvul.002G284600' => 'pvu', 'Phvul.003G258200' => 'pvu', 'Phvul.009G176500' => 'pvu', 'Potri.003G167201' => 'ptr', 'Potri.005G118400' => 'ptr', 'Potri.012G089000' => 'ptr', 'Potri.012G102800' => 'ptr', 'Potri.015G079400' => 'ptr', 'Potri.015G100900' => 'ptr', 'Pp3c14_9810' => 'ppa', 'Pp3c15_10450' => 'ppa', 'Pp3c20_19150' => 'ppa', 'Pp3c23_12740' => 'ppa', 'Pp3c23_6310' => 'ppa', 'Pp3c24_3720' => 'ppa', 'Pp3c27_2580' => 'ppa', 'Pp3c9_8990' => 'ppa', 'PRCOL_00002854' => 'pco', 'Prupe.1G221200' => 'ppe', 'Prupe.3G289000' => 'ppe', 'Prupe.5G147000' => 'ppe', 'Prupe.6G157300' => 'ppe', 'Prupe.7G163400' => 'ppe', 'Psat0s2177g0040' => 'psa', 'Psat3g174760' => 'psa', 'Psat3g192160' => 'psa', 'Psat4g058520' => 'psa', 'Psat4g096840' => 'psa', 'Psat7g037320' => 'psa', 'PSO017G1274' => 'pso', 'PSO017G5166' => 'pso', 'PSO063G4558' => 'pso', 'PSO170G4458' => 'pso', 'PSO170G5005' => 'pso', 'PSO210G6156' => 'pso', 'PSO210G6635' => 'pso', 'PSO210G7397' => 'pso', 'PSO210G7700' => 'pso', 'PSO455G0035' => 'pso', 'PSO455G0180' => 'pso', 'PSO478G4515' => 'pso', 'PSO832G1305' => 'pso', 'PSO832G3489' => 'pso', 'QL02p075247' => 'qlo', 'QL03p051148' => 'qlo', 'QL05p010313' => 'qlo', 'QL06p034627' => 'qlo', 'QL10p001889' => 'qlo', 'QL10p010846' => 'qlo', 'RcHm_v2.0_Chr1g0350621' => 'rch', 'RcHm_v2.0_Chr1g0350641' => 'rch', 'RcHm_v2.0_Chr2g0092891' => 'rch', 'RcHm_v2.0_Chr2g0100251' => 'rch', 'RcHm_v2.0_Chr2g0158661' => 'rch', 'RcHm_v2.0_Chr2g0172741' => 'rch', 'RcHm_v2.0_Chr4g0429571' => 'rch', 'RcHm_v2.0_Chr5g0042471' => 'rch', 'RcHm_v2.0_Chr7g0189451' => 'rch', 'Rhsim08G0052000' => 'rsi', 'Rhsim08G0174400' => 'rsi', 'Rhsim08G0193200' => 'rsi', 'Rhsim10G0214800' => 'rsi', 'Rhsim10G0214900' => 'rsi', 'Rhsim10G0215000' => 'rsi', 'Rhsim12G0022900' => 'rsi', 'Rhsim12G0177500' => 'rsi', 'Rhsim12G0177700' => 'rsi', 'Sabra03G0122600' => 'sbr', 'Sabra05G0097400' => 'sbr', 'Sabra12G0064100' => 'sbr', 'Sabra15G0121300' => 'sbr', 'SalBow2G0642' => 'sbo', 'SalBow5G2667' => 'sbo', 'SalBow5G4873' => 'sbo', 'SalBow8G2395' => 'sbo', 'Sc03g0003290' => 'sci', 'Sc10g0010130' => 'sci', 'Sc22g0003650' => 'sci', 'Sed0001603' => 'sed', 'Sed0004259' => 'sed', 'Sed0006789' => 'sed', 'Sed0011838' => 'sed', 'Sed0012964' => 'sed', 'Sed0016383' => 'sed', 'Sed0019010' => 'sed', 'Sed0020188' => 'sed', 'SEGI_04702' => 'sgi', 'SEGI_17231' => 'sgi', 'SEGI_18877' => 'sgi', 'SEGI_25196' => 'sgi', 'SEGI_25515' => 'sgi', 'SEGI_28445' => 'sgi', 'SEGI_37452' => 'sgi', 'SGA_v2.0_scaffold188G40336' => 'sas', 'SGA_v2.0_scaffold228G43247' => 'sas', 'SGA_v2.0_scaffold280G46853' => 'sas', 'SGA_v2.0_scaffold34G13808' => 'sas', 'SGA_v2.0_scaffold40G15576' => 'sas', 'SGA_v2.0_scaffold611G53188' => 'sas', 'SGA_v2.0_scaffold78G25461' => 'sas', 'SGA_v2.0_scaffold90G27888' => 'sas', 'SHI08601' => 'shi', 'SHI08606' => 'shi', 'SHI17117' => 'shi', 'SHI17119' => 'shi', 'SMO118G0201' => 'smo', 'SMO169G0247' => 'smo', 'SMO176G0006' => 'smo', 'SMO176G0015' => 'smo', 'SMO202G0006' => 'smo', 'SMO240G0050' => 'smo', 'SMO286G0009' => 'smo', 'SMO338G0033' => 'smo', 'SMO356G0533' => 'smo', 'SMO364G0382' => 'smo', 'SMO367G0166' => 'smo', 'SMO367G1098' => 'smo', 'Solyc01g009920.3' => 'sly', 'Solyc01g099300.3' => 'sly', 'Solyc02g084700.3' => 'sly', 'Solyc03g097520.3' => 'sly', 'Solyc06g071580.3' => 'sly', 'Solyc10g081760.3' => 'sly', 'Sopen01g005480' => 'spe', 'Sopen01g042850' => 'spe', 'Sopen02g029370' => 'spe', 'Sopen03g028280' => 'spe', 'Sopen06g027870' => 'spe', 'Sopen10g032270' => 'spe', 'Sp5g18180' => 'spa', 'Sp6g12880' => 'spa', 'Sp6g30850' => 'spa', 'Sp7g22960' => 'spa', 'Sp7g34010' => 'spa', 'SpUn1326_0010' => 'spa', 'TAR371G0242' => 'tar', 'TAR622G0638' => 'tar', 'TAR628G1548' => 'tar', 'TAR629G1079' => 'tar', 'TAR629G3413' => 'tar', 'THA.LOC104804249' => 'tha', 'THA.LOC104808315' => 'tha', 'THA.LOC104809238' => 'tha', 'THA.LOC104825484' => 'tha', 'Thecc.01G025500' => 'tca', 'Thecc.03G015800' => 'tca', 'Thecc.03G018000' => 'tca', 'Thecc.03G134800' => 'tca', 'Thecc.04G014700' => 'tca', 'Thhalv10006991m.g' => 'esa', 'Thhalv10012707m.g' => 'esa', 'Thhalv10015739m.g' => 'esa', 'Thhalv10024553m.g' => 'esa', 'Thhalv10024673m.g' => 'esa', 'Thhalv10029187m.g' => 'esa', 'TPR.G12971' => 'tpr', 'TPR.G29396' => 'tpr', 'TPR.G33376' => 'tpr', 'TPR.G35508' => 'tpr', 'TPR.G35516' => 'tpr', 'TPR.G37317' => 'tpr', 'TPR.G37389' => 'tpr', 'TPR.G37523' => 'tpr', 'TPR.G559' => 'tpr', 'TWI14G0070' => 'twi', 'TWI14G0729' => 'twi', 'TWI18G0596' => 'twi', 'TWI39G0780' => 'twi', 'TWI39G0850' => 'twi', 'TWI73G1052' => 'twi', 'unitig_52.g17485' => 'ugi', 'unitig_61.g26355' => 'ugi', 'vmacro01040' => 'vma', 'vmacro16731' => 'vma', 'vmacro18270' => 'vma', 'vmacro19142' => 'vma', 'vmacro19407' => 'vma', 'vmacro19408' => 'vma', 'vmacro21899' => 'vma', 'vmacro21900' => 'vma', 'vmacro21901' => 'vma', 'VMungo0251G0490' => 'vmu', 'VMungo0251G1748' => 'vmu', 'VMungo1309G0421' => 'vmu', 'Zm00001eb086500' => 'zma', 'Zm00001eb150680' => 'zma', 'Zm00001eb162330' => 'zma', 'Zm00001eb203130' => 'zma', 'Zm00001eb369480' => 'zma', 'Zm00001eb382340' => 'zma', 'Zm00001eb416360' => 'zma' ) $gf_id = 'HOM05D000902' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000902' ) $data_identifier = 'HOM05D000902' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 13, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 10, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 6, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 9, 'hma' => (int) 12, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 4, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 6, 'ppa' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 6, 'rch' => (int) 9, 'rsi' => (int) 9, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 12, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 3, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416360' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000902', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '663', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02470' => 'bna', 'A01p16260' => 'bna', 'A02p01680' => 'bna', 'A03p16600' => 'bna', 'A03p55660' => 'bna', 'A03p64160' => 'bna', 'A03p64170' => 'bna', 'A08p31900' => 'bna', 'A09p59530' => 'bna', 'A10p08230' => 'bna', 'A10p25090' => 'bna', 'Aa31LG3G7100' => 'aar', 'Aa31LG3G7110' => 'aar', 'Aa31LG6G13160' => 'aar', 'Aa31LG7G10770' => 'aar', 'Aa31LG7G3830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2723' => 'aag', 'Actinidia08045' => 'ach', 'Actinidia08888' => 'ach', 'Actinidia18333' => 'ach', 'Actinidia19334' => 'ach', 'Actinidia25552' => 'ach', 'Actinidia26089' => 'ach', 'Actinidia30615' => 'ach', 'Actinidia30616' => 'ach', 'Actinidia33083' => 'ach', 'Actinidia35762' => 'ach', 'Ah.02g110620' => 'amhyb', 'Ah.11g046390' => 'amhyb', 'AL1G31670' => 'aly', 'AL6G23730' => 'aly', 'AL7G14740' => 'aly', 'AL7G14750' => 'aly', 'AL7G14760' => 'aly', 'AL7G28220' => 'aly', 'AL8G24940' => 'aly', 'Aqoxy3G01665' => 'aox', 'Aqoxy3G02853' => 'aox', 'Aqoxy5G01513' => 'aox', 'Aqoxy5G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8SKA4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ75LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKDA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0LJZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7REX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZP4YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWX7I5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2QKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS0L9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPCD8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q161UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC7XCF' => 'arhy', 'AT1G19100' => 'ath', 'AT4G24970' => 'ath', 'AT4G36270' => 'ath', 'AT4G36280' => 'ath', 'AT4G36290' => 'ath', 'AT5G13130' => 'ath', 'AT5G50780' => 'ath', 'ATR0582G266' => 'atr', 'ATR0661G195' => 'atr', 'ATR1152G031' => 'atr', 'Atru.chr11.2382' => 'acertr', 'Atru.chr12.2337' => 'acertr', 'Atru.chr3.744' => 'acertr', 'Atru.chr6.1870' => 'acertr', 'Atru.chr9.2515' => 'acertr', 'AUR62004120' => 'cqu', 'AUR62005667' => 'cqu', 'AUR62007634' => 'cqu', 'AUR62008186' => 'cqu', 'AUR62008187' => 'cqu', 'AUR62008188' => 'cqu', 'AUR62027954' => 'cqu', 'AUR62028766' => 'cqu', 'AUR62028767' => 'cqu', 'AUR62028768' => 'cqu', 'AUR62028886' => 'cqu', 'AUR62029563' => 'cqu', 'AUR62038832' => 'cqu', 'BcaB01g04149' => 'bca', 'BcaB03g12940' => 'bca', 'BcaB03g13090' => 'bca', 'BcaB03g14466' => 'bca', 'BcaB05g24035' => 'bca', 'BcaC01g06050' => 'bca', 'BcaC04g19148' => 'bca', 'BcaC04g20761' => 'bca', 'BcaC06g32845' => 'bca', 'BcaC07g41274' => 'bca', 'BcaC09g50827' => 'bca', 'BcaNung00741' => 'bca', 'BcaNung00742' => 'bca', 'BcaNung01859' => 'bca', 'BcaNung03985' => 'bca', 'BcaNung03989' => 'bca', 'BcaNung05661' => 'bca', 'BolC1t00257H' => 'bol', 'BolC1t01956H' => 'bol', 'BolC2t06534H' => 'bol', 'BolC3t14334H' => 'bol', 'BolC5t30451H' => 'bol', 'BolC7t45880H' => 'bol', 'BolC7t46586H' => 'bol', 'BolC8t49301H' => 'bol', 'BolC8t51837H' => 'bol', 'BolC9t56822H' => 'bol', 'BolC9t59235H' => 'bol', 'BraA01t00234Z' => 'bra', 'BraA01t01563Z' => 'bra', 'BraA02t05147Z' => 'bra', 'BraA03t10947Z' => 'bra', 'BraA03t14633Z' => 'bra', 'BraA08t35112Z' => 'bra', 'BraA09t41330Z' => 'bra', 'BraA10t44570Z' => 'bra', 'C01p02670' => 'bna', 'C01p20260' => 'bna', 'C02p05890' => 'bna', 'C03p19530' => 'bna', 'C05p17470' => 'bna', 'C07p53900' => 'bna', 'C07p61630' => 'bna', 'C08p16800' => 'bna', 'C08p42810' => 'bna', 'C09p39480' => 'bna', 'C09p63980' => 'bna', 'CAN.G1001.7' => 'can', 'CAN.G1034.55' => 'can', 'CAN.G143.7' => 'can', 'CAN.G3340.1' => 'can', 'CAN.G358.19' => 'can', 'CAN.G373.2' => 'can', 'CAN.G674.16' => 'can', 'CAN.G674.17' => 'can', 'CAN.G674.18' => 'can', 'CAN.G732.2' => 'can', 'CAN.G732.3' => 'can', 'CAN.G993.39' => 'can', 'CANSAT01G2052' => 'cansat', 'CANSAT80G0070' => 'cansat', 'CANSAT80G0483' => 'cansat', 'CANSAT80G0625' => 'cansat', 'CARHR019690' => 'chi', 'CARHR080280' => 'chi', 'CARHR152750' => 'chi', 'CARHR152760' => 'chi', 'CARHR152770' => 'chi', 'CARHR200340' => 'chi', 'CARHR232370' => 'chi', 'CARHR244670' => 'chi', 'CARHR244680' => 'chi', 'CARHR257520' => 'chi', 'Carub.0001s1872' => 'cru', 'Carub.0006s1130' => 'cru', 'Carub.0007s0396' => 'cru', 'Carub.0007s0397' => 'cru', 'Carub.0007s1608' => 'cru', 'Carub.0008s1068' => 'cru', 'Carub.0008s1077' => 'cru', 'Ca_16158_v3' => 'car', 'Ca_17571_v3' => 'car', 'Ca_21936_v3' => 'car', 'Ca_22350_v3' => 'car', 'CBR_g22445' => 'cbr', 'CBR_g26290' => 'cbr', 'Cc04_g09610' => 'ccan', 'Cc04_g12280' => 'ccan', 'Cc07_g10230' => 'ccan', 'CDE02G0093' => 'cde', 'CDE02G0701' => 'cde', 'CDE04G1050' => 'cde', 'CDE05G1833' => 'cde', 'CDE05G3058' => 'cde', 'CDE05G3380' => 'cde', 'CDE06G0536' => 'cde', 'Cfa006923' => 'cfa', 'Cfa009402' => 'cfa', 'Cfa018751' => 'cfa', 'Cfa019164' => 'cfa', 'Cfa022935' => 'cfa', 'Ciclev10019081m.g' => 'ccl', 'Ciclev10025076m.g' => 'ccl', 'Ciclev10030712m.g' => 'ccl', 'Ciclev10033760m.g' => 'ccl', 'CiPaw.05G105600' => 'cil', 'CiPaw.08G136700' => 'cil', 'CiPaw.11G003900' => 'cil', 'CiPaw.11G023700' => 'cil', 'CiPaw.12G003700' => 'cil', 'ClCG06G017100' => 'cla', 'ClCG06G018110' => 'cla', 'ClCG07G008800' => 'cla', 'ClCG07G015330' => 'cla', 'COL.COLO4_13698' => 'col', 'COL.COLO4_16659' => 'col', 'COL.COLO4_21986' => 'col', 'COL.COLO4_24049' => 'col', 'COL.COLO4_29061' => 'col', 'COL.COLO4_29075' => 'col', 'COL.COLO4_30094' => 'col', 'Cpa.g.c33689' => 'cpa', 'Cpa.g.sc108.39' => 'cpa', 'Cpa.g.sc108.41' => 'cpa', 'Cpa.g.sc1163.1' => 'cpa', 'Cpa.g.sc4.155' => 'cpa', 'Cpa.g.sc6.194' => 'cpa', 'CsaV3_1G000340' => 'csa', 'CsaV3_1G001400' => 'csa', 'CsaV3_4G002220' => 'csa', 'CsaV3_4G005370' => 'csa', 'CSS0007487' => 'camsi', 'CSS0008066' => 'camsi', 'CSS0009120' => 'camsi', 'CSS0015512' => 'camsi', 'CSS0022409' => 'camsi', 'CSS0025358' => 'camsi', 'CSS0044547' => 'camsi', 'DCAR_013057' => 'dca', 'DCAR_015058' => 'dca', 'DCAR_016027' => 'dca', 'DCAR_017327' => 'dca', 'DCAR_020743' => 'dca', 'DCAR_026157' => 'dca', 'DCAR_032339' => 'dca', 'DCAR_032340' => 'dca', 'Dinv11200' => 'din', 'Dinv11201' => 'din', 'Dinv20631' => 'din', 'Dinv23182' => 'din', 'Dinv33466' => 'din', 'Dinv33583' => 'din', 'Dinv38565' => 'din', 'Duzib068G0200' => 'dzi', 'Duzib147G0132' => 'dzi', 'Duzib147G0635' => 'dzi', 'Duzib205G1670' => 'dzi', 'Duzib251G0606' => 'dzi', 'ECA232G3336' => 'eca', 'ECA232G3763' => 'eca', 'ECA232G4845' => 'eca', 'ECA234G1607' => 'eca', 'ECA246G0932' => 'eca', 'ECA247G0781' => 'eca', 'ECA247G1932' => 'eca', 'ECA247G2079' => 'eca', 'ECA247G3338' => 'eca', 'ECA247G4115' => 'eca', 'EL10Ac3g06552' => 'bvu', 'EL10Ac5g10721' => 'bvu', 'EL10Ac5g10722' => 'bvu', 'EL10Ac5g10723' => 'bvu', 'EL10Ac5g11361' => 'bvu', 'EL10Ac6g13553' => 'bvu', 'EL10As8g23872' => 'bvu', 'Eucgr.B00250' => 'egr', 'Eucgr.B00251' => 'egr', 'Eucgr.B03533' => 'egr', 'Eucgr.I02381' => 'egr', 'Eucgr.K02700' => 'egr', 'FAN02G0174' => 'fan', 'FAN02G3146' => 'fan', 'FAN04G1672' => 'fan', 'FAN04G2273' => 'fan', 'FAN05G2791' => 'fan', 'FAN05G4035' => 'fan', 'FAN07G0834' => 'fan', 'FAN08G1198' => 'fan', 'FAN09G4182' => 'fan', 'FAN12G0496' => 'fan', 'FAN13G1027' => 'fan', 'FAN13G2951' => 'fan', 'FAN14G0705' => 'fan', 'FAN14G0720' => 'fan', 'FAN17G0201' => 'fan', 'FAN17G2665' => 'fan', 'FAN18G1456' => 'fan', 'FAN18G1525' => 'fan', 'FAN18G3500' => 'fan', 'FAN28G2670' => 'fan', 'FvH4_1g12391' => 'fve', 'FvH4_4g23220' => 'fve', 'FvH4_5g08810' => 'fve', 'FvH4_5g28960' => 'fve', 'FvH4_6g42820' => 'fve', 'FvH4_6g51110' => 'fve', 'Glyma.02G051802' => 'gma', 'Glyma.04G185300' => 'gma', 'Glyma.05G202900' => 'gma', 'Glyma.08G010300' => 'gma', 'Glyma.16G131900' => 'gma', 'Glyma.17G087900' => 'gma', 'Gohir.A07G048600' => 'ghi', 'Gohir.A11G179000' => 'ghi', 'Gohir.A12G140900' => 'ghi', 'Gohir.A12G140950' => 'ghi', 'Gohir.A12G191700' => 'ghi', 'Gohir.A13G086300' => 'ghi', 'Gohir.D07G052900' => 'ghi', 'Gohir.D11G186600' => 'ghi', 'Gohir.D12G145575' => 'ghi', 'Gohir.D12G145650' => 'ghi', 'Gohir.D12G145725' => 'ghi', 'Gohir.D12G194050' => 'ghi', 'Gohir.D13G091800' => 'ghi', 'Gorai.001G055900' => 'gra', 'Gorai.007G198400' => 'gra', 'Gorai.008G157000' => 'gra', 'Gorai.008G157100' => 'gra', 'Gorai.008G208700' => 'gra', 'Gorai.010G138700' => 'gra', 'GSVIVG01000977001' => 'vvi', 'GSVIVG01007708001' => 'vvi', 'GSVIVG01008587001' => 'vvi', 'GSVIVG01018849001' => 'vvi', 'GSVIVG01032432001' => 'vvi', 'HanXRQChr02g0034131' => 'han', 'HanXRQChr02g0035981' => 'han', 'HanXRQChr02g0035991' => 'han', 'HanXRQChr05g0155611' => 'han', 'HanXRQChr05g0155621' => 'han', 'HanXRQChr08g0236501' => 'han', 'HanXRQChr09g0261321' => 'han', 'HanXRQChr09g0272081' => 'han', 'HanXRQChr10g0310741' => 'han', 'HanXRQChr11g0325591' => 'han', 'HanXRQChr12g0385691' => 'han', 'HanXRQChr13g0387801' => 'han', 'HanXRQChr15g0463011' => 'han', 'Haze_03826' => 'cav', 'Haze_03827' => 'cav', 'Haze_07183' => 'cav', 'Haze_07537' => 'cav', 'Haze_07539' => 'cav', 'Haze_12461' => 'cav', 'Haze_16115' => 'cav', 'Haze_16808' => 'cav', 'Haze_18531' => 'cav', 'Hma1.2p1_0046F.1_g026700' => 'hma', 'Hma1.2p1_0046F.1_g026710' => 'hma', 'Hma1.2p1_0168F.1_g074340' => 'hma', 'Hma1.2p1_0266F.1_g107030' => 'hma', 'Hma1.2p1_0266F.1_g107060' => 'hma', 'Hma1.2p1_0275F.1_g110510' => 'hma', 'Hma1.2p1_0592F.1_g185490' => 'hma', 'Hma1.2p1_0592F.1_g185500' => 'hma', 'Hma1.2p1_0592F.1_g185510' => 'hma', 'Hma1.2p1_0592F.1_g185520' => 'hma', 'Hma1.2p1_0592F.1_g185530' => 'hma', 'Hma1.2p1_0818F.1_g223450' => 'hma', 'HPP92_009708' => 'vpl', 'HPP92_009793' => 'vpl', 'HPP92_009796' => 'vpl', 'HPP92_009797' => 'vpl', 'HPP92_014940' => 'vpl', 'HPP92_014988' => 'vpl', 'Hund02463' => 'sun', 'Hund02760' => 'sun', 'Hund05071' => 'sun', 'Hund10108' => 'sun', 'Hund11204' => 'sun', 'Hund14016' => 'sun', 'Hund16464' => 'sun', 'Lalb_Chr09g0333391' => 'lal', 'Lalb_Chr11g0070461' => 'lal', 'Lalb_Chr12g0201671' => 'lal', 'Lalb_Chr13g0297161' => 'lal', 'Lj1g0002823' => 'lja', 'Lj3C1074T6' => 'lonja', 'Lj4A212T28' => 'lonja', 'Lj4g0005516' => 'lja', 'Lj4g0013705' => 'lja', 'Lj4g0027865' => 'lja', 'Lj5C92G16' => 'lonja', 'Lj5C92T12' => 'lonja', 'Lj7C596T3' => 'lonja', 'Lj9A446G59' => 'lonja', 'Lj9A482G21' => 'lonja', 'Lsat_1_v5_gn_1_28261' => 'lsa', 'Lsat_1_v5_gn_1_28281' => 'lsa', 'Lsat_1_v5_gn_1_32721' => 'lsa', 'Lsat_1_v5_gn_4_151760' => 'lsa', 'Lsat_1_v5_gn_4_2120' => 'lsa', 'Lsat_1_v5_gn_4_75761' => 'lsa', 'Lsat_1_v5_gn_5_10920' => 'lsa', 'Manes.02G099900' => 'mes', 'Manes.11G096200' => 'mes', 'Manes.12G007200' => 'mes', 'Manes.14G048300' => 'mes', 'Manes.17G114700' => 'mes', 'Mapoly0002s0070' => 'mpo', 'Mapoly0029s0099' => 'mpo', 'MBI07_g24742_MAGBIO' => 'mbi', 'MBI10_g27988_MAGBIO' => 'mbi', 'MBI11_g13057_MAGBIO' => 'mbi', 'MD02G1137200' => 'mdo', 'MD06G1137200' => 'mdo', 'MD07G1122300' => 'mdo', 'MD09G1078200' => 'mdo', 'MD13G1123700' => 'mdo', 'MD14G1151900' => 'mdo', 'MD17G1030900' => 'mdo', 'MD17G1068200' => 'mdo', 'MD17G1068600' => 'mdo', 'Medtr3g077540' => 'mtr', 'Medtr4g105530' => 'mtr', 'Medtr8g076580' => 'mtr', 'Medtr8g076590' => 'mtr', 'Medtr8g096410' => 'mtr', 'MELO3C016411.2' => 'cme', 'MELO3C017780.2' => 'cme', 'MELO3C022560.2' => 'cme', 'MELO3C026187.2' => 'cme', 'MELO3C026286.2' => 'cme', 'MELO3C032854.2' => 'cme', 'Migut.H02495' => 'egut', 'Migut.I00561' => 'egut', 'Migut.K01015' => 'egut', 'Migut.K01016' => 'egut', 'Migut.L00743' => 'egut', 'Migut.L00744' => 'egut', 'Migut.L00746' => 'egut', 'Migut.L00798' => 'egut', 'Migut.L00799' => 'egut', 'Migut.N02096' => 'egut', 'MSTRG.11259' => 'ama', 'MSTRG.23142' => 'ama', 'MSTRG.2499' => 'ama', 'Nitab4.5_0000003g0730' => 'nta', 'Nitab4.5_0000137g0020' => 'nta', 'Nitab4.5_0000721g0210' => 'nta', 'Nitab4.5_0000723g0050' => 'nta', 'Nitab4.5_0000913g0070' => 'nta', 'Nitab4.5_0001332g0040' => 'nta', 'Nitab4.5_0001771g0050' => 'nta', 'Nitab4.5_0001918g0050' => 'nta', 'Nitab4.5_0002686g0030' => 'nta', 'Nitab4.5_0003156g0020' => 'nta', 'Nitab4.5_0003383g0040' => 'nta', 'Nitab4.5_0003918g0010' => 'nta', 'Nitab4.5_0006760g0010' => 'nta', 'Nn1g05981' => 'nnu', 'Nn1g06288' => 'nnu', 'Nn3g16371' => 'nnu', 'Nn3g16786' => 'nnu', 'Nn4g22232' => 'nnu', 'Oeu005144.1' => 'oeu', 'Oeu005145.1' => 'oeu', 'Oeu011348.1' => 'oeu', 'Oeu016415.1' => 'oeu', 'Oeu023501.1' => 'oeu', 'Oeu044473.1' => 'oeu', 'Oeu048892.2' => 'oeu', 'Os01g0549200' => 'osa', 'Os02g0469300' => 'osa', 'Os04g0311100' => 'osa', 'Os06g0474900' => 'osa', 'Os10g0181700' => 'osa', 'Os11g0454800' => 'osa', 'Peaxi162Scf00037g00714' => 'pax', 'Peaxi162Scf00084g01217' => 'pax', 'Peaxi162Scf00257g00217' => 'pax', 'Peaxi162Scf00516g00215' => 'pax', 'Peaxi162Scf00689g00123' => 'pax', 'PGR044G2719' => 'pgr', 'PGR083G1360' => 'pgr', 'PGR102G2849' => 'pgr', 'PGR119G2534' => 'pgr', 'PGSC0003DMG400003538' => 'stu', 'PGSC0003DMG400028138' => 'stu', 'PGSC0003DMG400031732' => 'stu', 'PGSC0003DMG400038165' => 'stu', 'Phvul.002G284600' => 'pvu', 'Phvul.003G258200' => 'pvu', 'Phvul.009G176500' => 'pvu', 'Potri.003G167201' => 'ptr', 'Potri.005G118400' => 'ptr', 'Potri.012G089000' => 'ptr', 'Potri.012G102800' => 'ptr', 'Potri.015G079400' => 'ptr', 'Potri.015G100900' => 'ptr', 'Pp3c14_9810' => 'ppa', 'Pp3c15_10450' => 'ppa', 'Pp3c20_19150' => 'ppa', 'Pp3c23_12740' => 'ppa', 'Pp3c23_6310' => 'ppa', 'Pp3c24_3720' => 'ppa', 'Pp3c27_2580' => 'ppa', 'Pp3c9_8990' => 'ppa', 'PRCOL_00002854' => 'pco', 'Prupe.1G221200' => 'ppe', 'Prupe.3G289000' => 'ppe', 'Prupe.5G147000' => 'ppe', 'Prupe.6G157300' => 'ppe', 'Prupe.7G163400' => 'ppe', 'Psat0s2177g0040' => 'psa', 'Psat3g174760' => 'psa', 'Psat3g192160' => 'psa', 'Psat4g058520' => 'psa', 'Psat4g096840' => 'psa', 'Psat7g037320' => 'psa', 'PSO017G1274' => 'pso', 'PSO017G5166' => 'pso', 'PSO063G4558' => 'pso', 'PSO170G4458' => 'pso', 'PSO170G5005' => 'pso', 'PSO210G6156' => 'pso', 'PSO210G6635' => 'pso', 'PSO210G7397' => 'pso', 'PSO210G7700' => 'pso', 'PSO455G0035' => 'pso', 'PSO455G0180' => 'pso', 'PSO478G4515' => 'pso', 'PSO832G1305' => 'pso', 'PSO832G3489' => 'pso', 'QL02p075247' => 'qlo', 'QL03p051148' => 'qlo', 'QL05p010313' => 'qlo', 'QL06p034627' => 'qlo', 'QL10p001889' => 'qlo', 'QL10p010846' => 'qlo', 'RcHm_v2.0_Chr1g0350621' => 'rch', 'RcHm_v2.0_Chr1g0350641' => 'rch', 'RcHm_v2.0_Chr2g0092891' => 'rch', 'RcHm_v2.0_Chr2g0100251' => 'rch', 'RcHm_v2.0_Chr2g0158661' => 'rch', 'RcHm_v2.0_Chr2g0172741' => 'rch', 'RcHm_v2.0_Chr4g0429571' => 'rch', 'RcHm_v2.0_Chr5g0042471' => 'rch', 'RcHm_v2.0_Chr7g0189451' => 'rch', 'Rhsim08G0052000' => 'rsi', 'Rhsim08G0174400' => 'rsi', 'Rhsim08G0193200' => 'rsi', 'Rhsim10G0214800' => 'rsi', 'Rhsim10G0214900' => 'rsi', 'Rhsim10G0215000' => 'rsi', 'Rhsim12G0022900' => 'rsi', 'Rhsim12G0177500' => 'rsi', 'Rhsim12G0177700' => 'rsi', 'Sabra03G0122600' => 'sbr', 'Sabra05G0097400' => 'sbr', 'Sabra12G0064100' => 'sbr', 'Sabra15G0121300' => 'sbr', 'SalBow2G0642' => 'sbo', 'SalBow5G2667' => 'sbo', 'SalBow5G4873' => 'sbo', 'SalBow8G2395' => 'sbo', 'Sc03g0003290' => 'sci', 'Sc10g0010130' => 'sci', 'Sc22g0003650' => 'sci', 'Sed0001603' => 'sed', 'Sed0004259' => 'sed', 'Sed0006789' => 'sed', 'Sed0011838' => 'sed', 'Sed0012964' => 'sed', 'Sed0016383' => 'sed', 'Sed0019010' => 'sed', 'Sed0020188' => 'sed', 'SEGI_04702' => 'sgi', 'SEGI_17231' => 'sgi', 'SEGI_18877' => 'sgi', 'SEGI_25196' => 'sgi', 'SEGI_25515' => 'sgi', 'SEGI_28445' => 'sgi', 'SEGI_37452' => 'sgi', 'SGA_v2.0_scaffold188G40336' => 'sas', 'SGA_v2.0_scaffold228G43247' => 'sas', 'SGA_v2.0_scaffold280G46853' => 'sas', 'SGA_v2.0_scaffold34G13808' => 'sas', 'SGA_v2.0_scaffold40G15576' => 'sas', 'SGA_v2.0_scaffold611G53188' => 'sas', 'SGA_v2.0_scaffold78G25461' => 'sas', 'SGA_v2.0_scaffold90G27888' => 'sas', 'SHI08601' => 'shi', 'SHI08606' => 'shi', 'SHI17117' => 'shi', 'SHI17119' => 'shi', 'SMO118G0201' => 'smo', 'SMO169G0247' => 'smo', 'SMO176G0006' => 'smo', 'SMO176G0015' => 'smo', 'SMO202G0006' => 'smo', 'SMO240G0050' => 'smo', 'SMO286G0009' => 'smo', 'SMO338G0033' => 'smo', 'SMO356G0533' => 'smo', 'SMO364G0382' => 'smo', 'SMO367G0166' => 'smo', 'SMO367G1098' => 'smo', 'Solyc01g009920.3' => 'sly', 'Solyc01g099300.3' => 'sly', 'Solyc02g084700.3' => 'sly', 'Solyc03g097520.3' => 'sly', 'Solyc06g071580.3' => 'sly', 'Solyc10g081760.3' => 'sly', 'Sopen01g005480' => 'spe', 'Sopen01g042850' => 'spe', 'Sopen02g029370' => 'spe', 'Sopen03g028280' => 'spe', 'Sopen06g027870' => 'spe', 'Sopen10g032270' => 'spe', 'Sp5g18180' => 'spa', 'Sp6g12880' => 'spa', 'Sp6g30850' => 'spa', 'Sp7g22960' => 'spa', 'Sp7g34010' => 'spa', 'SpUn1326_0010' => 'spa', 'TAR371G0242' => 'tar', 'TAR622G0638' => 'tar', 'TAR628G1548' => 'tar', 'TAR629G1079' => 'tar', 'TAR629G3413' => 'tar', 'THA.LOC104804249' => 'tha', 'THA.LOC104808315' => 'tha', 'THA.LOC104809238' => 'tha', 'THA.LOC104825484' => 'tha', 'Thecc.01G025500' => 'tca', 'Thecc.03G015800' => 'tca', 'Thecc.03G018000' => 'tca', 'Thecc.03G134800' => 'tca', 'Thecc.04G014700' => 'tca', 'Thhalv10006991m.g' => 'esa', 'Thhalv10012707m.g' => 'esa', 'Thhalv10015739m.g' => 'esa', 'Thhalv10024553m.g' => 'esa', 'Thhalv10024673m.g' => 'esa', 'Thhalv10029187m.g' => 'esa', 'TPR.G12971' => 'tpr', 'TPR.G29396' => 'tpr', 'TPR.G33376' => 'tpr', 'TPR.G35508' => 'tpr', 'TPR.G35516' => 'tpr', 'TPR.G37317' => 'tpr', 'TPR.G37389' => 'tpr', 'TPR.G37523' => 'tpr', 'TPR.G559' => 'tpr', 'TWI14G0070' => 'twi', 'TWI14G0729' => 'twi', 'TWI18G0596' => 'twi', 'TWI39G0780' => 'twi', 'TWI39G0850' => 'twi', 'TWI73G1052' => 'twi', 'unitig_52.g17485' => 'ugi', 'unitig_61.g26355' => 'ugi', 'vmacro01040' => 'vma', 'vmacro16731' => 'vma', 'vmacro18270' => 'vma', 'vmacro19142' => 'vma', 'vmacro19407' => 'vma', 'vmacro19408' => 'vma', 'vmacro21899' => 'vma', 'vmacro21900' => 'vma', 'vmacro21901' => 'vma', 'VMungo0251G0490' => 'vmu', 'VMungo0251G1748' => 'vmu', 'VMungo1309G0421' => 'vmu', 'Zm00001eb086500' => 'zma', 'Zm00001eb150680' => 'zma', 'Zm00001eb162330' => 'zma', 'Zm00001eb203130' => 'zma', 'Zm00001eb369480' => 'zma', 'Zm00001eb382340' => 'zma', 'Zm00001eb416360' => 'zma' ), 'gf_id' => 'HOM05D000902', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000902' ), 'data_identifier' => 'HOM05D000902', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000902', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '663', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02470' => 'bna', 'A01p16260' => 'bna', 'A02p01680' => 'bna', 'A03p16600' => 'bna', 'A03p55660' => 'bna', 'A03p64160' => 'bna', 'A03p64170' => 'bna', 'A08p31900' => 'bna', 'A09p59530' => 'bna', 'A10p08230' => 'bna', 'A10p25090' => 'bna', 'Aa31LG3G7100' => 'aar', 'Aa31LG3G7110' => 'aar', 'Aa31LG6G13160' => 'aar', 'Aa31LG7G10770' => 'aar', 'Aa31LG7G3830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2723' => 'aag', 'Actinidia08045' => 'ach', 'Actinidia08888' => 'ach', 'Actinidia18333' => 'ach', 'Actinidia19334' => 'ach', 'Actinidia25552' => 'ach', 'Actinidia26089' => 'ach', 'Actinidia30615' => 'ach', 'Actinidia30616' => 'ach', 'Actinidia33083' => 'ach', 'Actinidia35762' => 'ach', 'Ah.02g110620' => 'amhyb', 'Ah.11g046390' => 'amhyb', 'AL1G31670' => 'aly', 'AL6G23730' => 'aly', 'AL7G14740' => 'aly', 'AL7G14750' => 'aly', 'AL7G14760' => 'aly', 'AL7G28220' => 'aly', 'AL8G24940' => 'aly', 'Aqoxy3G01665' => 'aox', 'Aqoxy3G02853' => 'aox', 'Aqoxy5G01513' => 'aox', 'Aqoxy5G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8SKA4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ75LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKDA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0LJZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7REX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZP4YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWX7I5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2QKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS0L9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPCD8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q161UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC7XCF' => 'arhy', 'AT1G19100' => 'ath', 'AT4G24970' => 'ath', 'AT4G36270' => 'ath', 'AT4G36280' => 'ath', 'AT4G36290' => 'ath', 'AT5G13130' => 'ath', 'AT5G50780' => 'ath', 'ATR0582G266' => 'atr', 'ATR0661G195' => 'atr', 'ATR1152G031' => 'atr', 'Atru.chr11.2382' => 'acertr', 'Atru.chr12.2337' => 'acertr', 'Atru.chr3.744' => 'acertr', 'Atru.chr6.1870' => 'acertr', 'Atru.chr9.2515' => 'acertr', 'AUR62004120' => 'cqu', 'AUR62005667' => 'cqu', 'AUR62007634' => 'cqu', 'AUR62008186' => 'cqu', 'AUR62008187' => 'cqu', 'AUR62008188' => 'cqu', 'AUR62027954' => 'cqu', 'AUR62028766' => 'cqu', 'AUR62028767' => 'cqu', 'AUR62028768' => 'cqu', 'AUR62028886' => 'cqu', 'AUR62029563' => 'cqu', 'AUR62038832' => 'cqu', 'BcaB01g04149' => 'bca', 'BcaB03g12940' => 'bca', 'BcaB03g13090' => 'bca', 'BcaB03g14466' => 'bca', 'BcaB05g24035' => 'bca', 'BcaC01g06050' => 'bca', 'BcaC04g19148' => 'bca', 'BcaC04g20761' => 'bca', 'BcaC06g32845' => 'bca', 'BcaC07g41274' => 'bca', 'BcaC09g50827' => 'bca', 'BcaNung00741' => 'bca', 'BcaNung00742' => 'bca', 'BcaNung01859' => 'bca', 'BcaNung03985' => 'bca', 'BcaNung03989' => 'bca', 'BcaNung05661' => 'bca', 'BolC1t00257H' => 'bol', 'BolC1t01956H' => 'bol', 'BolC2t06534H' => 'bol', 'BolC3t14334H' => 'bol', 'BolC5t30451H' => 'bol', 'BolC7t45880H' => 'bol', 'BolC7t46586H' => 'bol', 'BolC8t49301H' => 'bol', 'BolC8t51837H' => 'bol', 'BolC9t56822H' => 'bol', 'BolC9t59235H' => 'bol', 'BraA01t00234Z' => 'bra', 'BraA01t01563Z' => 'bra', 'BraA02t05147Z' => 'bra', 'BraA03t10947Z' => 'bra', 'BraA03t14633Z' => 'bra', 'BraA08t35112Z' => 'bra', 'BraA09t41330Z' => 'bra', 'BraA10t44570Z' => 'bra', 'C01p02670' => 'bna', 'C01p20260' => 'bna', 'C02p05890' => 'bna', 'C03p19530' => 'bna', 'C05p17470' => 'bna', 'C07p53900' => 'bna', 'C07p61630' => 'bna', 'C08p16800' => 'bna', 'C08p42810' => 'bna', 'C09p39480' => 'bna', 'C09p63980' => 'bna', 'CAN.G1001.7' => 'can', 'CAN.G1034.55' => 'can', 'CAN.G143.7' => 'can', 'CAN.G3340.1' => 'can', 'CAN.G358.19' => 'can', 'CAN.G373.2' => 'can', 'CAN.G674.16' => 'can', 'CAN.G674.17' => 'can', 'CAN.G674.18' => 'can', 'CAN.G732.2' => 'can', 'CAN.G732.3' => 'can', 'CAN.G993.39' => 'can', 'CANSAT01G2052' => 'cansat', 'CANSAT80G0070' => 'cansat', 'CANSAT80G0483' => 'cansat', 'CANSAT80G0625' => 'cansat', 'CARHR019690' => 'chi', 'CARHR080280' => 'chi', 'CARHR152750' => 'chi', 'CARHR152760' => 'chi', 'CARHR152770' => 'chi', 'CARHR200340' => 'chi', 'CARHR232370' => 'chi', 'CARHR244670' => 'chi', 'CARHR244680' => 'chi', 'CARHR257520' => 'chi', 'Carub.0001s1872' => 'cru', 'Carub.0006s1130' => 'cru', 'Carub.0007s0396' => 'cru', 'Carub.0007s0397' => 'cru', 'Carub.0007s1608' => 'cru', 'Carub.0008s1068' => 'cru', 'Carub.0008s1077' => 'cru', 'Ca_16158_v3' => 'car', 'Ca_17571_v3' => 'car', 'Ca_21936_v3' => 'car', 'Ca_22350_v3' => 'car', 'CBR_g22445' => 'cbr', 'CBR_g26290' => 'cbr', 'Cc04_g09610' => 'ccan', 'Cc04_g12280' => 'ccan', 'Cc07_g10230' => 'ccan', 'CDE02G0093' => 'cde', 'CDE02G0701' => 'cde', 'CDE04G1050' => 'cde', 'CDE05G1833' => 'cde', 'CDE05G3058' => 'cde', 'CDE05G3380' => 'cde', 'CDE06G0536' => 'cde', 'Cfa006923' => 'cfa', 'Cfa009402' => 'cfa', 'Cfa018751' => 'cfa', 'Cfa019164' => 'cfa', 'Cfa022935' => 'cfa', 'Ciclev10019081m.g' => 'ccl', 'Ciclev10025076m.g' => 'ccl', 'Ciclev10030712m.g' => 'ccl', 'Ciclev10033760m.g' => 'ccl', 'CiPaw.05G105600' => 'cil', 'CiPaw.08G136700' => 'cil', 'CiPaw.11G003900' => 'cil', 'CiPaw.11G023700' => 'cil', 'CiPaw.12G003700' => 'cil', 'ClCG06G017100' => 'cla', 'ClCG06G018110' => 'cla', 'ClCG07G008800' => 'cla', 'ClCG07G015330' => 'cla', 'COL.COLO4_13698' => 'col', 'COL.COLO4_16659' => 'col', 'COL.COLO4_21986' => 'col', 'COL.COLO4_24049' => 'col', 'COL.COLO4_29061' => 'col', 'COL.COLO4_29075' => 'col', 'COL.COLO4_30094' => 'col', 'Cpa.g.c33689' => 'cpa', 'Cpa.g.sc108.39' => 'cpa', 'Cpa.g.sc108.41' => 'cpa', 'Cpa.g.sc1163.1' => 'cpa', 'Cpa.g.sc4.155' => 'cpa', 'Cpa.g.sc6.194' => 'cpa', 'CsaV3_1G000340' => 'csa', 'CsaV3_1G001400' => 'csa', 'CsaV3_4G002220' => 'csa', 'CsaV3_4G005370' => 'csa', 'CSS0007487' => 'camsi', 'CSS0008066' => 'camsi', 'CSS0009120' => 'camsi', 'CSS0015512' => 'camsi', 'CSS0022409' => 'camsi', 'CSS0025358' => 'camsi', 'CSS0044547' => 'camsi', 'DCAR_013057' => 'dca', 'DCAR_015058' => 'dca', 'DCAR_016027' => 'dca', 'DCAR_017327' => 'dca', 'DCAR_020743' => 'dca', 'DCAR_026157' => 'dca', 'DCAR_032339' => 'dca', 'DCAR_032340' => 'dca', 'Dinv11200' => 'din', 'Dinv11201' => 'din', 'Dinv20631' => 'din', 'Dinv23182' => 'din', 'Dinv33466' => 'din', 'Dinv33583' => 'din', 'Dinv38565' => 'din', 'Duzib068G0200' => 'dzi', 'Duzib147G0132' => 'dzi', 'Duzib147G0635' => 'dzi', 'Duzib205G1670' => 'dzi', 'Duzib251G0606' => 'dzi', 'ECA232G3336' => 'eca', 'ECA232G3763' => 'eca', 'ECA232G4845' => 'eca', 'ECA234G1607' => 'eca', 'ECA246G0932' => 'eca', 'ECA247G0781' => 'eca', 'ECA247G1932' => 'eca', 'ECA247G2079' => 'eca', 'ECA247G3338' => 'eca', 'ECA247G4115' => 'eca', 'EL10Ac3g06552' => 'bvu', 'EL10Ac5g10721' => 'bvu', 'EL10Ac5g10722' => 'bvu', 'EL10Ac5g10723' => 'bvu', 'EL10Ac5g11361' => 'bvu', 'EL10Ac6g13553' => 'bvu', 'EL10As8g23872' => 'bvu', 'Eucgr.B00250' => 'egr', 'Eucgr.B00251' => 'egr', 'Eucgr.B03533' => 'egr', 'Eucgr.I02381' => 'egr', 'Eucgr.K02700' => 'egr', 'FAN02G0174' => 'fan', 'FAN02G3146' => 'fan', 'FAN04G1672' => 'fan', 'FAN04G2273' => 'fan', 'FAN05G2791' => 'fan', 'FAN05G4035' => 'fan', 'FAN07G0834' => 'fan', 'FAN08G1198' => 'fan', 'FAN09G4182' => 'fan', 'FAN12G0496' => 'fan', 'FAN13G1027' => 'fan', 'FAN13G2951' => 'fan', 'FAN14G0705' => 'fan', 'FAN14G0720' => 'fan', 'FAN17G0201' => 'fan', 'FAN17G2665' => 'fan', 'FAN18G1456' => 'fan', 'FAN18G1525' => 'fan', 'FAN18G3500' => 'fan', 'FAN28G2670' => 'fan', 'FvH4_1g12391' => 'fve', 'FvH4_4g23220' => 'fve', 'FvH4_5g08810' => 'fve', 'FvH4_5g28960' => 'fve', 'FvH4_6g42820' => 'fve', 'FvH4_6g51110' => 'fve', 'Glyma.02G051802' => 'gma', 'Glyma.04G185300' => 'gma', 'Glyma.05G202900' => 'gma', 'Glyma.08G010300' => 'gma', 'Glyma.16G131900' => 'gma', 'Glyma.17G087900' => 'gma', 'Gohir.A07G048600' => 'ghi', 'Gohir.A11G179000' => 'ghi', 'Gohir.A12G140900' => 'ghi', 'Gohir.A12G140950' => 'ghi', 'Gohir.A12G191700' => 'ghi', 'Gohir.A13G086300' => 'ghi', 'Gohir.D07G052900' => 'ghi', 'Gohir.D11G186600' => 'ghi', 'Gohir.D12G145575' => 'ghi', 'Gohir.D12G145650' => 'ghi', 'Gohir.D12G145725' => 'ghi', 'Gohir.D12G194050' => 'ghi', 'Gohir.D13G091800' => 'ghi', 'Gorai.001G055900' => 'gra', 'Gorai.007G198400' => 'gra', 'Gorai.008G157000' => 'gra', 'Gorai.008G157100' => 'gra', 'Gorai.008G208700' => 'gra', 'Gorai.010G138700' => 'gra', 'GSVIVG01000977001' => 'vvi', 'GSVIVG01007708001' => 'vvi', 'GSVIVG01008587001' => 'vvi', 'GSVIVG01018849001' => 'vvi', 'GSVIVG01032432001' => 'vvi', 'HanXRQChr02g0034131' => 'han', 'HanXRQChr02g0035981' => 'han', 'HanXRQChr02g0035991' => 'han', 'HanXRQChr05g0155611' => 'han', 'HanXRQChr05g0155621' => 'han', 'HanXRQChr08g0236501' => 'han', 'HanXRQChr09g0261321' => 'han', 'HanXRQChr09g0272081' => 'han', 'HanXRQChr10g0310741' => 'han', 'HanXRQChr11g0325591' => 'han', 'HanXRQChr12g0385691' => 'han', 'HanXRQChr13g0387801' => 'han', 'HanXRQChr15g0463011' => 'han', 'Haze_03826' => 'cav', 'Haze_03827' => 'cav', 'Haze_07183' => 'cav', 'Haze_07537' => 'cav', 'Haze_07539' => 'cav', 'Haze_12461' => 'cav', 'Haze_16115' => 'cav', 'Haze_16808' => 'cav', 'Haze_18531' => 'cav', 'Hma1.2p1_0046F.1_g026700' => 'hma', 'Hma1.2p1_0046F.1_g026710' => 'hma', 'Hma1.2p1_0168F.1_g074340' => 'hma', 'Hma1.2p1_0266F.1_g107030' => 'hma', 'Hma1.2p1_0266F.1_g107060' => 'hma', 'Hma1.2p1_0275F.1_g110510' => 'hma', 'Hma1.2p1_0592F.1_g185490' => 'hma', 'Hma1.2p1_0592F.1_g185500' => 'hma', 'Hma1.2p1_0592F.1_g185510' => 'hma', 'Hma1.2p1_0592F.1_g185520' => 'hma', 'Hma1.2p1_0592F.1_g185530' => 'hma', 'Hma1.2p1_0818F.1_g223450' => 'hma', 'HPP92_009708' => 'vpl', 'HPP92_009793' => 'vpl', 'HPP92_009796' => 'vpl', 'HPP92_009797' => 'vpl', 'HPP92_014940' => 'vpl', 'HPP92_014988' => 'vpl', 'Hund02463' => 'sun', 'Hund02760' => 'sun', 'Hund05071' => 'sun', 'Hund10108' => 'sun', 'Hund11204' => 'sun', 'Hund14016' => 'sun', 'Hund16464' => 'sun', 'Lalb_Chr09g0333391' => 'lal', 'Lalb_Chr11g0070461' => 'lal', 'Lalb_Chr12g0201671' => 'lal', 'Lalb_Chr13g0297161' => 'lal', 'Lj1g0002823' => 'lja', 'Lj3C1074T6' => 'lonja', 'Lj4A212T28' => 'lonja', 'Lj4g0005516' => 'lja', 'Lj4g0013705' => 'lja', 'Lj4g0027865' => 'lja', 'Lj5C92G16' => 'lonja', 'Lj5C92T12' => 'lonja', 'Lj7C596T3' => 'lonja', 'Lj9A446G59' => 'lonja', 'Lj9A482G21' => 'lonja', 'Lsat_1_v5_gn_1_28261' => 'lsa', 'Lsat_1_v5_gn_1_28281' => 'lsa', 'Lsat_1_v5_gn_1_32721' => 'lsa', 'Lsat_1_v5_gn_4_151760' => 'lsa', 'Lsat_1_v5_gn_4_2120' => 'lsa', 'Lsat_1_v5_gn_4_75761' => 'lsa', 'Lsat_1_v5_gn_5_10920' => 'lsa', 'Manes.02G099900' => 'mes', 'Manes.11G096200' => 'mes', 'Manes.12G007200' => 'mes', 'Manes.14G048300' => 'mes', 'Manes.17G114700' => 'mes', 'Mapoly0002s0070' => 'mpo', 'Mapoly0029s0099' => 'mpo', 'MBI07_g24742_MAGBIO' => 'mbi', 'MBI10_g27988_MAGBIO' => 'mbi', 'MBI11_g13057_MAGBIO' => 'mbi', 'MD02G1137200' => 'mdo', 'MD06G1137200' => 'mdo', 'MD07G1122300' => 'mdo', 'MD09G1078200' => 'mdo', 'MD13G1123700' => 'mdo', 'MD14G1151900' => 'mdo', 'MD17G1030900' => 'mdo', 'MD17G1068200' => 'mdo', 'MD17G1068600' => 'mdo', 'Medtr3g077540' => 'mtr', 'Medtr4g105530' => 'mtr', 'Medtr8g076580' => 'mtr', 'Medtr8g076590' => 'mtr', 'Medtr8g096410' => 'mtr', 'MELO3C016411.2' => 'cme', 'MELO3C017780.2' => 'cme', 'MELO3C022560.2' => 'cme', 'MELO3C026187.2' => 'cme', 'MELO3C026286.2' => 'cme', 'MELO3C032854.2' => 'cme', 'Migut.H02495' => 'egut', 'Migut.I00561' => 'egut', 'Migut.K01015' => 'egut', 'Migut.K01016' => 'egut', 'Migut.L00743' => 'egut', 'Migut.L00744' => 'egut', 'Migut.L00746' => 'egut', 'Migut.L00798' => 'egut', 'Migut.L00799' => 'egut', 'Migut.N02096' => 'egut', 'MSTRG.11259' => 'ama', 'MSTRG.23142' => 'ama', 'MSTRG.2499' => 'ama', 'Nitab4.5_0000003g0730' => 'nta', 'Nitab4.5_0000137g0020' => 'nta', 'Nitab4.5_0000721g0210' => 'nta', 'Nitab4.5_0000723g0050' => 'nta', 'Nitab4.5_0000913g0070' => 'nta', 'Nitab4.5_0001332g0040' => 'nta', 'Nitab4.5_0001771g0050' => 'nta', 'Nitab4.5_0001918g0050' => 'nta', 'Nitab4.5_0002686g0030' => 'nta', 'Nitab4.5_0003156g0020' => 'nta', 'Nitab4.5_0003383g0040' => 'nta', 'Nitab4.5_0003918g0010' => 'nta', 'Nitab4.5_0006760g0010' => 'nta', 'Nn1g05981' => 'nnu', 'Nn1g06288' => 'nnu', 'Nn3g16371' => 'nnu', 'Nn3g16786' => 'nnu', 'Nn4g22232' => 'nnu', 'Oeu005144.1' => 'oeu', 'Oeu005145.1' => 'oeu', 'Oeu011348.1' => 'oeu', 'Oeu016415.1' => 'oeu', 'Oeu023501.1' => 'oeu', 'Oeu044473.1' => 'oeu', 'Oeu048892.2' => 'oeu', 'Os01g0549200' => 'osa', 'Os02g0469300' => 'osa', 'Os04g0311100' => 'osa', 'Os06g0474900' => 'osa', 'Os10g0181700' => 'osa', 'Os11g0454800' => 'osa', 'Peaxi162Scf00037g00714' => 'pax', 'Peaxi162Scf00084g01217' => 'pax', 'Peaxi162Scf00257g00217' => 'pax', 'Peaxi162Scf00516g00215' => 'pax', 'Peaxi162Scf00689g00123' => 'pax', 'PGR044G2719' => 'pgr', 'PGR083G1360' => 'pgr', 'PGR102G2849' => 'pgr', 'PGR119G2534' => 'pgr', 'PGSC0003DMG400003538' => 'stu', 'PGSC0003DMG400028138' => 'stu', 'PGSC0003DMG400031732' => 'stu', 'PGSC0003DMG400038165' => 'stu', 'Phvul.002G284600' => 'pvu', 'Phvul.003G258200' => 'pvu', 'Phvul.009G176500' => 'pvu', 'Potri.003G167201' => 'ptr', 'Potri.005G118400' => 'ptr', 'Potri.012G089000' => 'ptr', 'Potri.012G102800' => 'ptr', 'Potri.015G079400' => 'ptr', 'Potri.015G100900' => 'ptr', 'Pp3c14_9810' => 'ppa', 'Pp3c15_10450' => 'ppa', 'Pp3c20_19150' => 'ppa', 'Pp3c23_12740' => 'ppa', 'Pp3c23_6310' => 'ppa', 'Pp3c24_3720' => 'ppa', 'Pp3c27_2580' => 'ppa', 'Pp3c9_8990' => 'ppa', 'PRCOL_00002854' => 'pco', 'Prupe.1G221200' => 'ppe', 'Prupe.3G289000' => 'ppe', 'Prupe.5G147000' => 'ppe', 'Prupe.6G157300' => 'ppe', 'Prupe.7G163400' => 'ppe', 'Psat0s2177g0040' => 'psa', 'Psat3g174760' => 'psa', 'Psat3g192160' => 'psa', 'Psat4g058520' => 'psa', 'Psat4g096840' => 'psa', 'Psat7g037320' => 'psa', 'PSO017G1274' => 'pso', 'PSO017G5166' => 'pso', 'PSO063G4558' => 'pso', 'PSO170G4458' => 'pso', 'PSO170G5005' => 'pso', 'PSO210G6156' => 'pso', 'PSO210G6635' => 'pso', 'PSO210G7397' => 'pso', 'PSO210G7700' => 'pso', 'PSO455G0035' => 'pso', 'PSO455G0180' => 'pso', 'PSO478G4515' => 'pso', 'PSO832G1305' => 'pso', 'PSO832G3489' => 'pso', 'QL02p075247' => 'qlo', 'QL03p051148' => 'qlo', 'QL05p010313' => 'qlo', 'QL06p034627' => 'qlo', 'QL10p001889' => 'qlo', 'QL10p010846' => 'qlo', 'RcHm_v2.0_Chr1g0350621' => 'rch', 'RcHm_v2.0_Chr1g0350641' => 'rch', 'RcHm_v2.0_Chr2g0092891' => 'rch', 'RcHm_v2.0_Chr2g0100251' => 'rch', 'RcHm_v2.0_Chr2g0158661' => 'rch', 'RcHm_v2.0_Chr2g0172741' => 'rch', 'RcHm_v2.0_Chr4g0429571' => 'rch', 'RcHm_v2.0_Chr5g0042471' => 'rch', 'RcHm_v2.0_Chr7g0189451' => 'rch', 'Rhsim08G0052000' => 'rsi', 'Rhsim08G0174400' => 'rsi', 'Rhsim08G0193200' => 'rsi', 'Rhsim10G0214800' => 'rsi', 'Rhsim10G0214900' => 'rsi', 'Rhsim10G0215000' => 'rsi', 'Rhsim12G0022900' => 'rsi', 'Rhsim12G0177500' => 'rsi', 'Rhsim12G0177700' => 'rsi', 'Sabra03G0122600' => 'sbr', 'Sabra05G0097400' => 'sbr', 'Sabra12G0064100' => 'sbr', 'Sabra15G0121300' => 'sbr', 'SalBow2G0642' => 'sbo', 'SalBow5G2667' => 'sbo', 'SalBow5G4873' => 'sbo', 'SalBow8G2395' => 'sbo', 'Sc03g0003290' => 'sci', 'Sc10g0010130' => 'sci', 'Sc22g0003650' => 'sci', 'Sed0001603' => 'sed', 'Sed0004259' => 'sed', 'Sed0006789' => 'sed', 'Sed0011838' => 'sed', 'Sed0012964' => 'sed', 'Sed0016383' => 'sed', 'Sed0019010' => 'sed', 'Sed0020188' => 'sed', 'SEGI_04702' => 'sgi', 'SEGI_17231' => 'sgi', 'SEGI_18877' => 'sgi', 'SEGI_25196' => 'sgi', 'SEGI_25515' => 'sgi', 'SEGI_28445' => 'sgi', 'SEGI_37452' => 'sgi', 'SGA_v2.0_scaffold188G40336' => 'sas', 'SGA_v2.0_scaffold228G43247' => 'sas', 'SGA_v2.0_scaffold280G46853' => 'sas', 'SGA_v2.0_scaffold34G13808' => 'sas', 'SGA_v2.0_scaffold40G15576' => 'sas', 'SGA_v2.0_scaffold611G53188' => 'sas', 'SGA_v2.0_scaffold78G25461' => 'sas', 'SGA_v2.0_scaffold90G27888' => 'sas', 'SHI08601' => 'shi', 'SHI08606' => 'shi', 'SHI17117' => 'shi', 'SHI17119' => 'shi', 'SMO118G0201' => 'smo', 'SMO169G0247' => 'smo', 'SMO176G0006' => 'smo', 'SMO176G0015' => 'smo', 'SMO202G0006' => 'smo', 'SMO240G0050' => 'smo', 'SMO286G0009' => 'smo', 'SMO338G0033' => 'smo', 'SMO356G0533' => 'smo', 'SMO364G0382' => 'smo', 'SMO367G0166' => 'smo', 'SMO367G1098' => 'smo', 'Solyc01g009920.3' => 'sly', 'Solyc01g099300.3' => 'sly', 'Solyc02g084700.3' => 'sly', 'Solyc03g097520.3' => 'sly', 'Solyc06g071580.3' => 'sly', 'Solyc10g081760.3' => 'sly', 'Sopen01g005480' => 'spe', 'Sopen01g042850' => 'spe', 'Sopen02g029370' => 'spe', 'Sopen03g028280' => 'spe', 'Sopen06g027870' => 'spe', 'Sopen10g032270' => 'spe', 'Sp5g18180' => 'spa', 'Sp6g12880' => 'spa', 'Sp6g30850' => 'spa', 'Sp7g22960' => 'spa', 'Sp7g34010' => 'spa', 'SpUn1326_0010' => 'spa', 'TAR371G0242' => 'tar', 'TAR622G0638' => 'tar', 'TAR628G1548' => 'tar', 'TAR629G1079' => 'tar', 'TAR629G3413' => 'tar', 'THA.LOC104804249' => 'tha', 'THA.LOC104808315' => 'tha', 'THA.LOC104809238' => 'tha', 'THA.LOC104825484' => 'tha', 'Thecc.01G025500' => 'tca', 'Thecc.03G015800' => 'tca', 'Thecc.03G018000' => 'tca', 'Thecc.03G134800' => 'tca', 'Thecc.04G014700' => 'tca', 'Thhalv10006991m.g' => 'esa', 'Thhalv10012707m.g' => 'esa', 'Thhalv10015739m.g' => 'esa', 'Thhalv10024553m.g' => 'esa', 'Thhalv10024673m.g' => 'esa', 'Thhalv10029187m.g' => 'esa', 'TPR.G12971' => 'tpr', 'TPR.G29396' => 'tpr', 'TPR.G33376' => 'tpr', 'TPR.G35508' => 'tpr', 'TPR.G35516' => 'tpr', 'TPR.G37317' => 'tpr', 'TPR.G37389' => 'tpr', 'TPR.G37523' => 'tpr', 'TPR.G559' => 'tpr', 'TWI14G0070' => 'twi', 'TWI14G0729' => 'twi', 'TWI18G0596' => 'twi', 'TWI39G0780' => 'twi', 'TWI39G0850' => 'twi', 'TWI73G1052' => 'twi', 'unitig_52.g17485' => 'ugi', 'unitig_61.g26355' => 'ugi', 'vmacro01040' => 'vma', 'vmacro16731' => 'vma', 'vmacro18270' => 'vma', 'vmacro19142' => 'vma', 'vmacro19407' => 'vma', 'vmacro19408' => 'vma', 'vmacro21899' => 'vma', 'vmacro21900' => 'vma', 'vmacro21901' => 'vma', 'VMungo0251G0490' => 'vmu', 'VMungo0251G1748' => 'vmu', 'VMungo1309G0421' => 'vmu', 'Zm00001eb086500' => 'zma', 'Zm00001eb150680' => 'zma', 'Zm00001eb162330' => 'zma', 'Zm00001eb203130' => 'zma', 'Zm00001eb369480' => 'zma', 'Zm00001eb382340' => 'zma', 'Zm00001eb416360' => 'zma' ) $gf_id = 'HOM05D000902' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000902' ) $data_identifier = 'HOM05D000902' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 13, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 10, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 6, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 9, 'hma' => (int) 12, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 4, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 6, 'ppa' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 6, 'rch' => (int) 9, 'rsi' => (int) 9, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 12, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 3, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416360' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000902', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '663', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02470' => 'bna', 'A01p16260' => 'bna', 'A02p01680' => 'bna', 'A03p16600' => 'bna', 'A03p55660' => 'bna', 'A03p64160' => 'bna', 'A03p64170' => 'bna', 'A08p31900' => 'bna', 'A09p59530' => 'bna', 'A10p08230' => 'bna', 'A10p25090' => 'bna', 'Aa31LG3G7100' => 'aar', 'Aa31LG3G7110' => 'aar', 'Aa31LG6G13160' => 'aar', 'Aa31LG7G10770' => 'aar', 'Aa31LG7G3830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2723' => 'aag', 'Actinidia08045' => 'ach', 'Actinidia08888' => 'ach', 'Actinidia18333' => 'ach', 'Actinidia19334' => 'ach', 'Actinidia25552' => 'ach', 'Actinidia26089' => 'ach', 'Actinidia30615' => 'ach', 'Actinidia30616' => 'ach', 'Actinidia33083' => 'ach', 'Actinidia35762' => 'ach', 'Ah.02g110620' => 'amhyb', 'Ah.11g046390' => 'amhyb', 'AL1G31670' => 'aly', 'AL6G23730' => 'aly', 'AL7G14740' => 'aly', 'AL7G14750' => 'aly', 'AL7G14760' => 'aly', 'AL7G28220' => 'aly', 'AL8G24940' => 'aly', 'Aqoxy3G01665' => 'aox', 'Aqoxy3G02853' => 'aox', 'Aqoxy5G01513' => 'aox', 'Aqoxy5G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8SKA4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ75LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKDA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0LJZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7REX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZP4YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWX7I5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2QKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS0L9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPCD8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q161UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC7XCF' => 'arhy', 'AT1G19100' => 'ath', 'AT4G24970' => 'ath', 'AT4G36270' => 'ath', 'AT4G36280' => 'ath', 'AT4G36290' => 'ath', 'AT5G13130' => 'ath', 'AT5G50780' => 'ath', 'ATR0582G266' => 'atr', 'ATR0661G195' => 'atr', 'ATR1152G031' => 'atr', 'Atru.chr11.2382' => 'acertr', 'Atru.chr12.2337' => 'acertr', 'Atru.chr3.744' => 'acertr', 'Atru.chr6.1870' => 'acertr', 'Atru.chr9.2515' => 'acertr', 'AUR62004120' => 'cqu', 'AUR62005667' => 'cqu', 'AUR62007634' => 'cqu', 'AUR62008186' => 'cqu', 'AUR62008187' => 'cqu', 'AUR62008188' => 'cqu', 'AUR62027954' => 'cqu', 'AUR62028766' => 'cqu', 'AUR62028767' => 'cqu', 'AUR62028768' => 'cqu', 'AUR62028886' => 'cqu', 'AUR62029563' => 'cqu', 'AUR62038832' => 'cqu', 'BcaB01g04149' => 'bca', 'BcaB03g12940' => 'bca', 'BcaB03g13090' => 'bca', 'BcaB03g14466' => 'bca', 'BcaB05g24035' => 'bca', 'BcaC01g06050' => 'bca', 'BcaC04g19148' => 'bca', 'BcaC04g20761' => 'bca', 'BcaC06g32845' => 'bca', 'BcaC07g41274' => 'bca', 'BcaC09g50827' => 'bca', 'BcaNung00741' => 'bca', 'BcaNung00742' => 'bca', 'BcaNung01859' => 'bca', 'BcaNung03985' => 'bca', 'BcaNung03989' => 'bca', 'BcaNung05661' => 'bca', 'BolC1t00257H' => 'bol', 'BolC1t01956H' => 'bol', 'BolC2t06534H' => 'bol', 'BolC3t14334H' => 'bol', 'BolC5t30451H' => 'bol', 'BolC7t45880H' => 'bol', 'BolC7t46586H' => 'bol', 'BolC8t49301H' => 'bol', 'BolC8t51837H' => 'bol', 'BolC9t56822H' => 'bol', 'BolC9t59235H' => 'bol', 'BraA01t00234Z' => 'bra', 'BraA01t01563Z' => 'bra', 'BraA02t05147Z' => 'bra', 'BraA03t10947Z' => 'bra', 'BraA03t14633Z' => 'bra', 'BraA08t35112Z' => 'bra', 'BraA09t41330Z' => 'bra', 'BraA10t44570Z' => 'bra', 'C01p02670' => 'bna', 'C01p20260' => 'bna', 'C02p05890' => 'bna', 'C03p19530' => 'bna', 'C05p17470' => 'bna', 'C07p53900' => 'bna', 'C07p61630' => 'bna', 'C08p16800' => 'bna', 'C08p42810' => 'bna', 'C09p39480' => 'bna', 'C09p63980' => 'bna', 'CAN.G1001.7' => 'can', 'CAN.G1034.55' => 'can', 'CAN.G143.7' => 'can', 'CAN.G3340.1' => 'can', 'CAN.G358.19' => 'can', 'CAN.G373.2' => 'can', 'CAN.G674.16' => 'can', 'CAN.G674.17' => 'can', 'CAN.G674.18' => 'can', 'CAN.G732.2' => 'can', 'CAN.G732.3' => 'can', 'CAN.G993.39' => 'can', 'CANSAT01G2052' => 'cansat', 'CANSAT80G0070' => 'cansat', 'CANSAT80G0483' => 'cansat', 'CANSAT80G0625' => 'cansat', 'CARHR019690' => 'chi', 'CARHR080280' => 'chi', 'CARHR152750' => 'chi', 'CARHR152760' => 'chi', 'CARHR152770' => 'chi', 'CARHR200340' => 'chi', 'CARHR232370' => 'chi', 'CARHR244670' => 'chi', 'CARHR244680' => 'chi', 'CARHR257520' => 'chi', 'Carub.0001s1872' => 'cru', 'Carub.0006s1130' => 'cru', 'Carub.0007s0396' => 'cru', 'Carub.0007s0397' => 'cru', 'Carub.0007s1608' => 'cru', 'Carub.0008s1068' => 'cru', 'Carub.0008s1077' => 'cru', 'Ca_16158_v3' => 'car', 'Ca_17571_v3' => 'car', 'Ca_21936_v3' => 'car', 'Ca_22350_v3' => 'car', 'CBR_g22445' => 'cbr', 'CBR_g26290' => 'cbr', 'Cc04_g09610' => 'ccan', 'Cc04_g12280' => 'ccan', 'Cc07_g10230' => 'ccan', 'CDE02G0093' => 'cde', 'CDE02G0701' => 'cde', 'CDE04G1050' => 'cde', 'CDE05G1833' => 'cde', 'CDE05G3058' => 'cde', 'CDE05G3380' => 'cde', 'CDE06G0536' => 'cde', 'Cfa006923' => 'cfa', 'Cfa009402' => 'cfa', 'Cfa018751' => 'cfa', 'Cfa019164' => 'cfa', 'Cfa022935' => 'cfa', 'Ciclev10019081m.g' => 'ccl', 'Ciclev10025076m.g' => 'ccl', 'Ciclev10030712m.g' => 'ccl', 'Ciclev10033760m.g' => 'ccl', 'CiPaw.05G105600' => 'cil', 'CiPaw.08G136700' => 'cil', 'CiPaw.11G003900' => 'cil', 'CiPaw.11G023700' => 'cil', 'CiPaw.12G003700' => 'cil', 'ClCG06G017100' => 'cla', 'ClCG06G018110' => 'cla', 'ClCG07G008800' => 'cla', 'ClCG07G015330' => 'cla', 'COL.COLO4_13698' => 'col', 'COL.COLO4_16659' => 'col', 'COL.COLO4_21986' => 'col', 'COL.COLO4_24049' => 'col', 'COL.COLO4_29061' => 'col', 'COL.COLO4_29075' => 'col', 'COL.COLO4_30094' => 'col', 'Cpa.g.c33689' => 'cpa', 'Cpa.g.sc108.39' => 'cpa', 'Cpa.g.sc108.41' => 'cpa', 'Cpa.g.sc1163.1' => 'cpa', 'Cpa.g.sc4.155' => 'cpa', 'Cpa.g.sc6.194' => 'cpa', 'CsaV3_1G000340' => 'csa', 'CsaV3_1G001400' => 'csa', 'CsaV3_4G002220' => 'csa', 'CsaV3_4G005370' => 'csa', 'CSS0007487' => 'camsi', 'CSS0008066' => 'camsi', 'CSS0009120' => 'camsi', 'CSS0015512' => 'camsi', 'CSS0022409' => 'camsi', 'CSS0025358' => 'camsi', 'CSS0044547' => 'camsi', 'DCAR_013057' => 'dca', 'DCAR_015058' => 'dca', 'DCAR_016027' => 'dca', 'DCAR_017327' => 'dca', 'DCAR_020743' => 'dca', 'DCAR_026157' => 'dca', 'DCAR_032339' => 'dca', 'DCAR_032340' => 'dca', 'Dinv11200' => 'din', 'Dinv11201' => 'din', 'Dinv20631' => 'din', 'Dinv23182' => 'din', 'Dinv33466' => 'din', 'Dinv33583' => 'din', 'Dinv38565' => 'din', 'Duzib068G0200' => 'dzi', 'Duzib147G0132' => 'dzi', 'Duzib147G0635' => 'dzi', 'Duzib205G1670' => 'dzi', 'Duzib251G0606' => 'dzi', 'ECA232G3336' => 'eca', 'ECA232G3763' => 'eca', 'ECA232G4845' => 'eca', 'ECA234G1607' => 'eca', 'ECA246G0932' => 'eca', 'ECA247G0781' => 'eca', 'ECA247G1932' => 'eca', 'ECA247G2079' => 'eca', 'ECA247G3338' => 'eca', 'ECA247G4115' => 'eca', 'EL10Ac3g06552' => 'bvu', 'EL10Ac5g10721' => 'bvu', 'EL10Ac5g10722' => 'bvu', 'EL10Ac5g10723' => 'bvu', 'EL10Ac5g11361' => 'bvu', 'EL10Ac6g13553' => 'bvu', 'EL10As8g23872' => 'bvu', 'Eucgr.B00250' => 'egr', 'Eucgr.B00251' => 'egr', 'Eucgr.B03533' => 'egr', 'Eucgr.I02381' => 'egr', 'Eucgr.K02700' => 'egr', 'FAN02G0174' => 'fan', 'FAN02G3146' => 'fan', 'FAN04G1672' => 'fan', 'FAN04G2273' => 'fan', 'FAN05G2791' => 'fan', 'FAN05G4035' => 'fan', 'FAN07G0834' => 'fan', 'FAN08G1198' => 'fan', 'FAN09G4182' => 'fan', 'FAN12G0496' => 'fan', 'FAN13G1027' => 'fan', 'FAN13G2951' => 'fan', 'FAN14G0705' => 'fan', 'FAN14G0720' => 'fan', 'FAN17G0201' => 'fan', 'FAN17G2665' => 'fan', 'FAN18G1456' => 'fan', 'FAN18G1525' => 'fan', 'FAN18G3500' => 'fan', 'FAN28G2670' => 'fan', 'FvH4_1g12391' => 'fve', 'FvH4_4g23220' => 'fve', 'FvH4_5g08810' => 'fve', 'FvH4_5g28960' => 'fve', 'FvH4_6g42820' => 'fve', 'FvH4_6g51110' => 'fve', 'Glyma.02G051802' => 'gma', 'Glyma.04G185300' => 'gma', 'Glyma.05G202900' => 'gma', 'Glyma.08G010300' => 'gma', 'Glyma.16G131900' => 'gma', 'Glyma.17G087900' => 'gma', 'Gohir.A07G048600' => 'ghi', 'Gohir.A11G179000' => 'ghi', 'Gohir.A12G140900' => 'ghi', 'Gohir.A12G140950' => 'ghi', 'Gohir.A12G191700' => 'ghi', 'Gohir.A13G086300' => 'ghi', 'Gohir.D07G052900' => 'ghi', 'Gohir.D11G186600' => 'ghi', 'Gohir.D12G145575' => 'ghi', 'Gohir.D12G145650' => 'ghi', 'Gohir.D12G145725' => 'ghi', 'Gohir.D12G194050' => 'ghi', 'Gohir.D13G091800' => 'ghi', 'Gorai.001G055900' => 'gra', 'Gorai.007G198400' => 'gra', 'Gorai.008G157000' => 'gra', 'Gorai.008G157100' => 'gra', 'Gorai.008G208700' => 'gra', 'Gorai.010G138700' => 'gra', 'GSVIVG01000977001' => 'vvi', 'GSVIVG01007708001' => 'vvi', 'GSVIVG01008587001' => 'vvi', 'GSVIVG01018849001' => 'vvi', 'GSVIVG01032432001' => 'vvi', 'HanXRQChr02g0034131' => 'han', 'HanXRQChr02g0035981' => 'han', 'HanXRQChr02g0035991' => 'han', 'HanXRQChr05g0155611' => 'han', 'HanXRQChr05g0155621' => 'han', 'HanXRQChr08g0236501' => 'han', 'HanXRQChr09g0261321' => 'han', 'HanXRQChr09g0272081' => 'han', 'HanXRQChr10g0310741' => 'han', 'HanXRQChr11g0325591' => 'han', 'HanXRQChr12g0385691' => 'han', 'HanXRQChr13g0387801' => 'han', 'HanXRQChr15g0463011' => 'han', 'Haze_03826' => 'cav', 'Haze_03827' => 'cav', 'Haze_07183' => 'cav', 'Haze_07537' => 'cav', 'Haze_07539' => 'cav', 'Haze_12461' => 'cav', 'Haze_16115' => 'cav', 'Haze_16808' => 'cav', 'Haze_18531' => 'cav', 'Hma1.2p1_0046F.1_g026700' => 'hma', 'Hma1.2p1_0046F.1_g026710' => 'hma', 'Hma1.2p1_0168F.1_g074340' => 'hma', 'Hma1.2p1_0266F.1_g107030' => 'hma', 'Hma1.2p1_0266F.1_g107060' => 'hma', 'Hma1.2p1_0275F.1_g110510' => 'hma', 'Hma1.2p1_0592F.1_g185490' => 'hma', 'Hma1.2p1_0592F.1_g185500' => 'hma', 'Hma1.2p1_0592F.1_g185510' => 'hma', 'Hma1.2p1_0592F.1_g185520' => 'hma', 'Hma1.2p1_0592F.1_g185530' => 'hma', 'Hma1.2p1_0818F.1_g223450' => 'hma', 'HPP92_009708' => 'vpl', 'HPP92_009793' => 'vpl', 'HPP92_009796' => 'vpl', 'HPP92_009797' => 'vpl', 'HPP92_014940' => 'vpl', 'HPP92_014988' => 'vpl', 'Hund02463' => 'sun', 'Hund02760' => 'sun', 'Hund05071' => 'sun', 'Hund10108' => 'sun', 'Hund11204' => 'sun', 'Hund14016' => 'sun', 'Hund16464' => 'sun', 'Lalb_Chr09g0333391' => 'lal', 'Lalb_Chr11g0070461' => 'lal', 'Lalb_Chr12g0201671' => 'lal', 'Lalb_Chr13g0297161' => 'lal', 'Lj1g0002823' => 'lja', 'Lj3C1074T6' => 'lonja', 'Lj4A212T28' => 'lonja', 'Lj4g0005516' => 'lja', 'Lj4g0013705' => 'lja', 'Lj4g0027865' => 'lja', 'Lj5C92G16' => 'lonja', 'Lj5C92T12' => 'lonja', 'Lj7C596T3' => 'lonja', 'Lj9A446G59' => 'lonja', 'Lj9A482G21' => 'lonja', 'Lsat_1_v5_gn_1_28261' => 'lsa', 'Lsat_1_v5_gn_1_28281' => 'lsa', 'Lsat_1_v5_gn_1_32721' => 'lsa', 'Lsat_1_v5_gn_4_151760' => 'lsa', 'Lsat_1_v5_gn_4_2120' => 'lsa', 'Lsat_1_v5_gn_4_75761' => 'lsa', 'Lsat_1_v5_gn_5_10920' => 'lsa', 'Manes.02G099900' => 'mes', 'Manes.11G096200' => 'mes', 'Manes.12G007200' => 'mes', 'Manes.14G048300' => 'mes', 'Manes.17G114700' => 'mes', 'Mapoly0002s0070' => 'mpo', 'Mapoly0029s0099' => 'mpo', 'MBI07_g24742_MAGBIO' => 'mbi', 'MBI10_g27988_MAGBIO' => 'mbi', 'MBI11_g13057_MAGBIO' => 'mbi', 'MD02G1137200' => 'mdo', 'MD06G1137200' => 'mdo', 'MD07G1122300' => 'mdo', 'MD09G1078200' => 'mdo', 'MD13G1123700' => 'mdo', 'MD14G1151900' => 'mdo', 'MD17G1030900' => 'mdo', 'MD17G1068200' => 'mdo', 'MD17G1068600' => 'mdo', 'Medtr3g077540' => 'mtr', 'Medtr4g105530' => 'mtr', 'Medtr8g076580' => 'mtr', 'Medtr8g076590' => 'mtr', 'Medtr8g096410' => 'mtr', 'MELO3C016411.2' => 'cme', 'MELO3C017780.2' => 'cme', 'MELO3C022560.2' => 'cme', 'MELO3C026187.2' => 'cme', 'MELO3C026286.2' => 'cme', 'MELO3C032854.2' => 'cme', 'Migut.H02495' => 'egut', 'Migut.I00561' => 'egut', 'Migut.K01015' => 'egut', 'Migut.K01016' => 'egut', 'Migut.L00743' => 'egut', 'Migut.L00744' => 'egut', 'Migut.L00746' => 'egut', 'Migut.L00798' => 'egut', 'Migut.L00799' => 'egut', 'Migut.N02096' => 'egut', 'MSTRG.11259' => 'ama', 'MSTRG.23142' => 'ama', 'MSTRG.2499' => 'ama', 'Nitab4.5_0000003g0730' => 'nta', 'Nitab4.5_0000137g0020' => 'nta', 'Nitab4.5_0000721g0210' => 'nta', 'Nitab4.5_0000723g0050' => 'nta', 'Nitab4.5_0000913g0070' => 'nta', 'Nitab4.5_0001332g0040' => 'nta', 'Nitab4.5_0001771g0050' => 'nta', 'Nitab4.5_0001918g0050' => 'nta', 'Nitab4.5_0002686g0030' => 'nta', 'Nitab4.5_0003156g0020' => 'nta', 'Nitab4.5_0003383g0040' => 'nta', 'Nitab4.5_0003918g0010' => 'nta', 'Nitab4.5_0006760g0010' => 'nta', 'Nn1g05981' => 'nnu', 'Nn1g06288' => 'nnu', 'Nn3g16371' => 'nnu', 'Nn3g16786' => 'nnu', 'Nn4g22232' => 'nnu', 'Oeu005144.1' => 'oeu', 'Oeu005145.1' => 'oeu', 'Oeu011348.1' => 'oeu', 'Oeu016415.1' => 'oeu', 'Oeu023501.1' => 'oeu', 'Oeu044473.1' => 'oeu', 'Oeu048892.2' => 'oeu', 'Os01g0549200' => 'osa', 'Os02g0469300' => 'osa', 'Os04g0311100' => 'osa', 'Os06g0474900' => 'osa', 'Os10g0181700' => 'osa', 'Os11g0454800' => 'osa', 'Peaxi162Scf00037g00714' => 'pax', 'Peaxi162Scf00084g01217' => 'pax', 'Peaxi162Scf00257g00217' => 'pax', 'Peaxi162Scf00516g00215' => 'pax', 'Peaxi162Scf00689g00123' => 'pax', 'PGR044G2719' => 'pgr', 'PGR083G1360' => 'pgr', 'PGR102G2849' => 'pgr', 'PGR119G2534' => 'pgr', 'PGSC0003DMG400003538' => 'stu', 'PGSC0003DMG400028138' => 'stu', 'PGSC0003DMG400031732' => 'stu', 'PGSC0003DMG400038165' => 'stu', 'Phvul.002G284600' => 'pvu', 'Phvul.003G258200' => 'pvu', 'Phvul.009G176500' => 'pvu', 'Potri.003G167201' => 'ptr', 'Potri.005G118400' => 'ptr', 'Potri.012G089000' => 'ptr', 'Potri.012G102800' => 'ptr', 'Potri.015G079400' => 'ptr', 'Potri.015G100900' => 'ptr', 'Pp3c14_9810' => 'ppa', 'Pp3c15_10450' => 'ppa', 'Pp3c20_19150' => 'ppa', 'Pp3c23_12740' => 'ppa', 'Pp3c23_6310' => 'ppa', 'Pp3c24_3720' => 'ppa', 'Pp3c27_2580' => 'ppa', 'Pp3c9_8990' => 'ppa', 'PRCOL_00002854' => 'pco', 'Prupe.1G221200' => 'ppe', 'Prupe.3G289000' => 'ppe', 'Prupe.5G147000' => 'ppe', 'Prupe.6G157300' => 'ppe', 'Prupe.7G163400' => 'ppe', 'Psat0s2177g0040' => 'psa', 'Psat3g174760' => 'psa', 'Psat3g192160' => 'psa', 'Psat4g058520' => 'psa', 'Psat4g096840' => 'psa', 'Psat7g037320' => 'psa', 'PSO017G1274' => 'pso', 'PSO017G5166' => 'pso', 'PSO063G4558' => 'pso', 'PSO170G4458' => 'pso', 'PSO170G5005' => 'pso', 'PSO210G6156' => 'pso', 'PSO210G6635' => 'pso', 'PSO210G7397' => 'pso', 'PSO210G7700' => 'pso', 'PSO455G0035' => 'pso', 'PSO455G0180' => 'pso', 'PSO478G4515' => 'pso', 'PSO832G1305' => 'pso', 'PSO832G3489' => 'pso', 'QL02p075247' => 'qlo', 'QL03p051148' => 'qlo', 'QL05p010313' => 'qlo', 'QL06p034627' => 'qlo', 'QL10p001889' => 'qlo', 'QL10p010846' => 'qlo', 'RcHm_v2.0_Chr1g0350621' => 'rch', 'RcHm_v2.0_Chr1g0350641' => 'rch', 'RcHm_v2.0_Chr2g0092891' => 'rch', 'RcHm_v2.0_Chr2g0100251' => 'rch', 'RcHm_v2.0_Chr2g0158661' => 'rch', 'RcHm_v2.0_Chr2g0172741' => 'rch', 'RcHm_v2.0_Chr4g0429571' => 'rch', 'RcHm_v2.0_Chr5g0042471' => 'rch', 'RcHm_v2.0_Chr7g0189451' => 'rch', 'Rhsim08G0052000' => 'rsi', 'Rhsim08G0174400' => 'rsi', 'Rhsim08G0193200' => 'rsi', 'Rhsim10G0214800' => 'rsi', 'Rhsim10G0214900' => 'rsi', 'Rhsim10G0215000' => 'rsi', 'Rhsim12G0022900' => 'rsi', 'Rhsim12G0177500' => 'rsi', 'Rhsim12G0177700' => 'rsi', 'Sabra03G0122600' => 'sbr', 'Sabra05G0097400' => 'sbr', 'Sabra12G0064100' => 'sbr', 'Sabra15G0121300' => 'sbr', 'SalBow2G0642' => 'sbo', 'SalBow5G2667' => 'sbo', 'SalBow5G4873' => 'sbo', 'SalBow8G2395' => 'sbo', 'Sc03g0003290' => 'sci', 'Sc10g0010130' => 'sci', 'Sc22g0003650' => 'sci', 'Sed0001603' => 'sed', 'Sed0004259' => 'sed', 'Sed0006789' => 'sed', 'Sed0011838' => 'sed', 'Sed0012964' => 'sed', 'Sed0016383' => 'sed', 'Sed0019010' => 'sed', 'Sed0020188' => 'sed', 'SEGI_04702' => 'sgi', 'SEGI_17231' => 'sgi', 'SEGI_18877' => 'sgi', 'SEGI_25196' => 'sgi', 'SEGI_25515' => 'sgi', 'SEGI_28445' => 'sgi', 'SEGI_37452' => 'sgi', 'SGA_v2.0_scaffold188G40336' => 'sas', 'SGA_v2.0_scaffold228G43247' => 'sas', 'SGA_v2.0_scaffold280G46853' => 'sas', 'SGA_v2.0_scaffold34G13808' => 'sas', 'SGA_v2.0_scaffold40G15576' => 'sas', 'SGA_v2.0_scaffold611G53188' => 'sas', 'SGA_v2.0_scaffold78G25461' => 'sas', 'SGA_v2.0_scaffold90G27888' => 'sas', 'SHI08601' => 'shi', 'SHI08606' => 'shi', 'SHI17117' => 'shi', 'SHI17119' => 'shi', 'SMO118G0201' => 'smo', 'SMO169G0247' => 'smo', 'SMO176G0006' => 'smo', 'SMO176G0015' => 'smo', 'SMO202G0006' => 'smo', 'SMO240G0050' => 'smo', 'SMO286G0009' => 'smo', 'SMO338G0033' => 'smo', 'SMO356G0533' => 'smo', 'SMO364G0382' => 'smo', 'SMO367G0166' => 'smo', 'SMO367G1098' => 'smo', 'Solyc01g009920.3' => 'sly', 'Solyc01g099300.3' => 'sly', 'Solyc02g084700.3' => 'sly', 'Solyc03g097520.3' => 'sly', 'Solyc06g071580.3' => 'sly', 'Solyc10g081760.3' => 'sly', 'Sopen01g005480' => 'spe', 'Sopen01g042850' => 'spe', 'Sopen02g029370' => 'spe', 'Sopen03g028280' => 'spe', 'Sopen06g027870' => 'spe', 'Sopen10g032270' => 'spe', 'Sp5g18180' => 'spa', 'Sp6g12880' => 'spa', 'Sp6g30850' => 'spa', 'Sp7g22960' => 'spa', 'Sp7g34010' => 'spa', 'SpUn1326_0010' => 'spa', 'TAR371G0242' => 'tar', 'TAR622G0638' => 'tar', 'TAR628G1548' => 'tar', 'TAR629G1079' => 'tar', 'TAR629G3413' => 'tar', 'THA.LOC104804249' => 'tha', 'THA.LOC104808315' => 'tha', 'THA.LOC104809238' => 'tha', 'THA.LOC104825484' => 'tha', 'Thecc.01G025500' => 'tca', 'Thecc.03G015800' => 'tca', 'Thecc.03G018000' => 'tca', 'Thecc.03G134800' => 'tca', 'Thecc.04G014700' => 'tca', 'Thhalv10006991m.g' => 'esa', 'Thhalv10012707m.g' => 'esa', 'Thhalv10015739m.g' => 'esa', 'Thhalv10024553m.g' => 'esa', 'Thhalv10024673m.g' => 'esa', 'Thhalv10029187m.g' => 'esa', 'TPR.G12971' => 'tpr', 'TPR.G29396' => 'tpr', 'TPR.G33376' => 'tpr', 'TPR.G35508' => 'tpr', 'TPR.G35516' => 'tpr', 'TPR.G37317' => 'tpr', 'TPR.G37389' => 'tpr', 'TPR.G37523' => 'tpr', 'TPR.G559' => 'tpr', 'TWI14G0070' => 'twi', 'TWI14G0729' => 'twi', 'TWI18G0596' => 'twi', 'TWI39G0780' => 'twi', 'TWI39G0850' => 'twi', 'TWI73G1052' => 'twi', 'unitig_52.g17485' => 'ugi', 'unitig_61.g26355' => 'ugi', 'vmacro01040' => 'vma', 'vmacro16731' => 'vma', 'vmacro18270' => 'vma', 'vmacro19142' => 'vma', 'vmacro19407' => 'vma', 'vmacro19408' => 'vma', 'vmacro21899' => 'vma', 'vmacro21900' => 'vma', 'vmacro21901' => 'vma', 'VMungo0251G0490' => 'vmu', 'VMungo0251G1748' => 'vmu', 'VMungo1309G0421' => 'vmu', 'Zm00001eb086500' => 'zma', 'Zm00001eb150680' => 'zma', 'Zm00001eb162330' => 'zma', 'Zm00001eb203130' => 'zma', 'Zm00001eb369480' => 'zma', 'Zm00001eb382340' => 'zma', 'Zm00001eb416360' => 'zma' ), 'gf_id' => 'HOM05D000902', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000902' ), 'data_identifier' => 'HOM05D000902', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000902', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '663', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02470' => 'bna', 'A01p16260' => 'bna', 'A02p01680' => 'bna', 'A03p16600' => 'bna', 'A03p55660' => 'bna', 'A03p64160' => 'bna', 'A03p64170' => 'bna', 'A08p31900' => 'bna', 'A09p59530' => 'bna', 'A10p08230' => 'bna', 'A10p25090' => 'bna', 'Aa31LG3G7100' => 'aar', 'Aa31LG3G7110' => 'aar', 'Aa31LG6G13160' => 'aar', 'Aa31LG7G10770' => 'aar', 'Aa31LG7G3830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2723' => 'aag', 'Actinidia08045' => 'ach', 'Actinidia08888' => 'ach', 'Actinidia18333' => 'ach', 'Actinidia19334' => 'ach', 'Actinidia25552' => 'ach', 'Actinidia26089' => 'ach', 'Actinidia30615' => 'ach', 'Actinidia30616' => 'ach', 'Actinidia33083' => 'ach', 'Actinidia35762' => 'ach', 'Ah.02g110620' => 'amhyb', 'Ah.11g046390' => 'amhyb', 'AL1G31670' => 'aly', 'AL6G23730' => 'aly', 'AL7G14740' => 'aly', 'AL7G14750' => 'aly', 'AL7G14760' => 'aly', 'AL7G28220' => 'aly', 'AL8G24940' => 'aly', 'Aqoxy3G01665' => 'aox', 'Aqoxy3G02853' => 'aox', 'Aqoxy5G01513' => 'aox', 'Aqoxy5G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8SKA4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ75LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKDA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0LJZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7REX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZP4YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWX7I5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2QKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS0L9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPCD8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q161UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC7XCF' => 'arhy', 'AT1G19100' => 'ath', 'AT4G24970' => 'ath', 'AT4G36270' => 'ath', 'AT4G36280' => 'ath', 'AT4G36290' => 'ath', 'AT5G13130' => 'ath', 'AT5G50780' => 'ath', 'ATR0582G266' => 'atr', 'ATR0661G195' => 'atr', 'ATR1152G031' => 'atr', 'Atru.chr11.2382' => 'acertr', 'Atru.chr12.2337' => 'acertr', 'Atru.chr3.744' => 'acertr', 'Atru.chr6.1870' => 'acertr', 'Atru.chr9.2515' => 'acertr', 'AUR62004120' => 'cqu', 'AUR62005667' => 'cqu', 'AUR62007634' => 'cqu', 'AUR62008186' => 'cqu', 'AUR62008187' => 'cqu', 'AUR62008188' => 'cqu', 'AUR62027954' => 'cqu', 'AUR62028766' => 'cqu', 'AUR62028767' => 'cqu', 'AUR62028768' => 'cqu', 'AUR62028886' => 'cqu', 'AUR62029563' => 'cqu', 'AUR62038832' => 'cqu', 'BcaB01g04149' => 'bca', 'BcaB03g12940' => 'bca', 'BcaB03g13090' => 'bca', 'BcaB03g14466' => 'bca', 'BcaB05g24035' => 'bca', 'BcaC01g06050' => 'bca', 'BcaC04g19148' => 'bca', 'BcaC04g20761' => 'bca', 'BcaC06g32845' => 'bca', 'BcaC07g41274' => 'bca', 'BcaC09g50827' => 'bca', 'BcaNung00741' => 'bca', 'BcaNung00742' => 'bca', 'BcaNung01859' => 'bca', 'BcaNung03985' => 'bca', 'BcaNung03989' => 'bca', 'BcaNung05661' => 'bca', 'BolC1t00257H' => 'bol', 'BolC1t01956H' => 'bol', 'BolC2t06534H' => 'bol', 'BolC3t14334H' => 'bol', 'BolC5t30451H' => 'bol', 'BolC7t45880H' => 'bol', 'BolC7t46586H' => 'bol', 'BolC8t49301H' => 'bol', 'BolC8t51837H' => 'bol', 'BolC9t56822H' => 'bol', 'BolC9t59235H' => 'bol', 'BraA01t00234Z' => 'bra', 'BraA01t01563Z' => 'bra', 'BraA02t05147Z' => 'bra', 'BraA03t10947Z' => 'bra', 'BraA03t14633Z' => 'bra', 'BraA08t35112Z' => 'bra', 'BraA09t41330Z' => 'bra', 'BraA10t44570Z' => 'bra', 'C01p02670' => 'bna', 'C01p20260' => 'bna', 'C02p05890' => 'bna', 'C03p19530' => 'bna', 'C05p17470' => 'bna', 'C07p53900' => 'bna', 'C07p61630' => 'bna', 'C08p16800' => 'bna', 'C08p42810' => 'bna', 'C09p39480' => 'bna', 'C09p63980' => 'bna', 'CAN.G1001.7' => 'can', 'CAN.G1034.55' => 'can', 'CAN.G143.7' => 'can', 'CAN.G3340.1' => 'can', 'CAN.G358.19' => 'can', 'CAN.G373.2' => 'can', 'CAN.G674.16' => 'can', 'CAN.G674.17' => 'can', 'CAN.G674.18' => 'can', 'CAN.G732.2' => 'can', 'CAN.G732.3' => 'can', 'CAN.G993.39' => 'can', 'CANSAT01G2052' => 'cansat', 'CANSAT80G0070' => 'cansat', 'CANSAT80G0483' => 'cansat', 'CANSAT80G0625' => 'cansat', 'CARHR019690' => 'chi', 'CARHR080280' => 'chi', 'CARHR152750' => 'chi', 'CARHR152760' => 'chi', 'CARHR152770' => 'chi', 'CARHR200340' => 'chi', 'CARHR232370' => 'chi', 'CARHR244670' => 'chi', 'CARHR244680' => 'chi', 'CARHR257520' => 'chi', 'Carub.0001s1872' => 'cru', 'Carub.0006s1130' => 'cru', 'Carub.0007s0396' => 'cru', 'Carub.0007s0397' => 'cru', 'Carub.0007s1608' => 'cru', 'Carub.0008s1068' => 'cru', 'Carub.0008s1077' => 'cru', 'Ca_16158_v3' => 'car', 'Ca_17571_v3' => 'car', 'Ca_21936_v3' => 'car', 'Ca_22350_v3' => 'car', 'CBR_g22445' => 'cbr', 'CBR_g26290' => 'cbr', 'Cc04_g09610' => 'ccan', 'Cc04_g12280' => 'ccan', 'Cc07_g10230' => 'ccan', 'CDE02G0093' => 'cde', 'CDE02G0701' => 'cde', 'CDE04G1050' => 'cde', 'CDE05G1833' => 'cde', 'CDE05G3058' => 'cde', 'CDE05G3380' => 'cde', 'CDE06G0536' => 'cde', 'Cfa006923' => 'cfa', 'Cfa009402' => 'cfa', 'Cfa018751' => 'cfa', 'Cfa019164' => 'cfa', 'Cfa022935' => 'cfa', 'Ciclev10019081m.g' => 'ccl', 'Ciclev10025076m.g' => 'ccl', 'Ciclev10030712m.g' => 'ccl', 'Ciclev10033760m.g' => 'ccl', 'CiPaw.05G105600' => 'cil', 'CiPaw.08G136700' => 'cil', 'CiPaw.11G003900' => 'cil', 'CiPaw.11G023700' => 'cil', 'CiPaw.12G003700' => 'cil', 'ClCG06G017100' => 'cla', 'ClCG06G018110' => 'cla', 'ClCG07G008800' => 'cla', 'ClCG07G015330' => 'cla', 'COL.COLO4_13698' => 'col', 'COL.COLO4_16659' => 'col', 'COL.COLO4_21986' => 'col', 'COL.COLO4_24049' => 'col', 'COL.COLO4_29061' => 'col', 'COL.COLO4_29075' => 'col', 'COL.COLO4_30094' => 'col', 'Cpa.g.c33689' => 'cpa', 'Cpa.g.sc108.39' => 'cpa', 'Cpa.g.sc108.41' => 'cpa', 'Cpa.g.sc1163.1' => 'cpa', 'Cpa.g.sc4.155' => 'cpa', 'Cpa.g.sc6.194' => 'cpa', 'CsaV3_1G000340' => 'csa', 'CsaV3_1G001400' => 'csa', 'CsaV3_4G002220' => 'csa', 'CsaV3_4G005370' => 'csa', 'CSS0007487' => 'camsi', 'CSS0008066' => 'camsi', 'CSS0009120' => 'camsi', 'CSS0015512' => 'camsi', 'CSS0022409' => 'camsi', 'CSS0025358' => 'camsi', 'CSS0044547' => 'camsi', 'DCAR_013057' => 'dca', 'DCAR_015058' => 'dca', 'DCAR_016027' => 'dca', 'DCAR_017327' => 'dca', 'DCAR_020743' => 'dca', 'DCAR_026157' => 'dca', 'DCAR_032339' => 'dca', 'DCAR_032340' => 'dca', 'Dinv11200' => 'din', 'Dinv11201' => 'din', 'Dinv20631' => 'din', 'Dinv23182' => 'din', 'Dinv33466' => 'din', 'Dinv33583' => 'din', 'Dinv38565' => 'din', 'Duzib068G0200' => 'dzi', 'Duzib147G0132' => 'dzi', 'Duzib147G0635' => 'dzi', 'Duzib205G1670' => 'dzi', 'Duzib251G0606' => 'dzi', 'ECA232G3336' => 'eca', 'ECA232G3763' => 'eca', 'ECA232G4845' => 'eca', 'ECA234G1607' => 'eca', 'ECA246G0932' => 'eca', 'ECA247G0781' => 'eca', 'ECA247G1932' => 'eca', 'ECA247G2079' => 'eca', 'ECA247G3338' => 'eca', 'ECA247G4115' => 'eca', 'EL10Ac3g06552' => 'bvu', 'EL10Ac5g10721' => 'bvu', 'EL10Ac5g10722' => 'bvu', 'EL10Ac5g10723' => 'bvu', 'EL10Ac5g11361' => 'bvu', 'EL10Ac6g13553' => 'bvu', 'EL10As8g23872' => 'bvu', 'Eucgr.B00250' => 'egr', 'Eucgr.B00251' => 'egr', 'Eucgr.B03533' => 'egr', 'Eucgr.I02381' => 'egr', 'Eucgr.K02700' => 'egr', 'FAN02G0174' => 'fan', 'FAN02G3146' => 'fan', 'FAN04G1672' => 'fan', 'FAN04G2273' => 'fan', 'FAN05G2791' => 'fan', 'FAN05G4035' => 'fan', 'FAN07G0834' => 'fan', 'FAN08G1198' => 'fan', 'FAN09G4182' => 'fan', 'FAN12G0496' => 'fan', 'FAN13G1027' => 'fan', 'FAN13G2951' => 'fan', 'FAN14G0705' => 'fan', 'FAN14G0720' => 'fan', 'FAN17G0201' => 'fan', 'FAN17G2665' => 'fan', 'FAN18G1456' => 'fan', 'FAN18G1525' => 'fan', 'FAN18G3500' => 'fan', 'FAN28G2670' => 'fan', 'FvH4_1g12391' => 'fve', 'FvH4_4g23220' => 'fve', 'FvH4_5g08810' => 'fve', 'FvH4_5g28960' => 'fve', 'FvH4_6g42820' => 'fve', 'FvH4_6g51110' => 'fve', 'Glyma.02G051802' => 'gma', 'Glyma.04G185300' => 'gma', 'Glyma.05G202900' => 'gma', 'Glyma.08G010300' => 'gma', 'Glyma.16G131900' => 'gma', 'Glyma.17G087900' => 'gma', 'Gohir.A07G048600' => 'ghi', 'Gohir.A11G179000' => 'ghi', 'Gohir.A12G140900' => 'ghi', 'Gohir.A12G140950' => 'ghi', 'Gohir.A12G191700' => 'ghi', 'Gohir.A13G086300' => 'ghi', 'Gohir.D07G052900' => 'ghi', 'Gohir.D11G186600' => 'ghi', 'Gohir.D12G145575' => 'ghi', 'Gohir.D12G145650' => 'ghi', 'Gohir.D12G145725' => 'ghi', 'Gohir.D12G194050' => 'ghi', 'Gohir.D13G091800' => 'ghi', 'Gorai.001G055900' => 'gra', 'Gorai.007G198400' => 'gra', 'Gorai.008G157000' => 'gra', 'Gorai.008G157100' => 'gra', 'Gorai.008G208700' => 'gra', 'Gorai.010G138700' => 'gra', 'GSVIVG01000977001' => 'vvi', 'GSVIVG01007708001' => 'vvi', 'GSVIVG01008587001' => 'vvi', 'GSVIVG01018849001' => 'vvi', 'GSVIVG01032432001' => 'vvi', 'HanXRQChr02g0034131' => 'han', 'HanXRQChr02g0035981' => 'han', 'HanXRQChr02g0035991' => 'han', 'HanXRQChr05g0155611' => 'han', 'HanXRQChr05g0155621' => 'han', 'HanXRQChr08g0236501' => 'han', 'HanXRQChr09g0261321' => 'han', 'HanXRQChr09g0272081' => 'han', 'HanXRQChr10g0310741' => 'han', 'HanXRQChr11g0325591' => 'han', 'HanXRQChr12g0385691' => 'han', 'HanXRQChr13g0387801' => 'han', 'HanXRQChr15g0463011' => 'han', 'Haze_03826' => 'cav', 'Haze_03827' => 'cav', 'Haze_07183' => 'cav', 'Haze_07537' => 'cav', 'Haze_07539' => 'cav', 'Haze_12461' => 'cav', 'Haze_16115' => 'cav', 'Haze_16808' => 'cav', 'Haze_18531' => 'cav', 'Hma1.2p1_0046F.1_g026700' => 'hma', 'Hma1.2p1_0046F.1_g026710' => 'hma', 'Hma1.2p1_0168F.1_g074340' => 'hma', 'Hma1.2p1_0266F.1_g107030' => 'hma', 'Hma1.2p1_0266F.1_g107060' => 'hma', 'Hma1.2p1_0275F.1_g110510' => 'hma', 'Hma1.2p1_0592F.1_g185490' => 'hma', 'Hma1.2p1_0592F.1_g185500' => 'hma', 'Hma1.2p1_0592F.1_g185510' => 'hma', 'Hma1.2p1_0592F.1_g185520' => 'hma', 'Hma1.2p1_0592F.1_g185530' => 'hma', 'Hma1.2p1_0818F.1_g223450' => 'hma', 'HPP92_009708' => 'vpl', 'HPP92_009793' => 'vpl', 'HPP92_009796' => 'vpl', 'HPP92_009797' => 'vpl', 'HPP92_014940' => 'vpl', 'HPP92_014988' => 'vpl', 'Hund02463' => 'sun', 'Hund02760' => 'sun', 'Hund05071' => 'sun', 'Hund10108' => 'sun', 'Hund11204' => 'sun', 'Hund14016' => 'sun', 'Hund16464' => 'sun', 'Lalb_Chr09g0333391' => 'lal', 'Lalb_Chr11g0070461' => 'lal', 'Lalb_Chr12g0201671' => 'lal', 'Lalb_Chr13g0297161' => 'lal', 'Lj1g0002823' => 'lja', 'Lj3C1074T6' => 'lonja', 'Lj4A212T28' => 'lonja', 'Lj4g0005516' => 'lja', 'Lj4g0013705' => 'lja', 'Lj4g0027865' => 'lja', 'Lj5C92G16' => 'lonja', 'Lj5C92T12' => 'lonja', 'Lj7C596T3' => 'lonja', 'Lj9A446G59' => 'lonja', 'Lj9A482G21' => 'lonja', 'Lsat_1_v5_gn_1_28261' => 'lsa', 'Lsat_1_v5_gn_1_28281' => 'lsa', 'Lsat_1_v5_gn_1_32721' => 'lsa', 'Lsat_1_v5_gn_4_151760' => 'lsa', 'Lsat_1_v5_gn_4_2120' => 'lsa', 'Lsat_1_v5_gn_4_75761' => 'lsa', 'Lsat_1_v5_gn_5_10920' => 'lsa', 'Manes.02G099900' => 'mes', 'Manes.11G096200' => 'mes', 'Manes.12G007200' => 'mes', 'Manes.14G048300' => 'mes', 'Manes.17G114700' => 'mes', 'Mapoly0002s0070' => 'mpo', 'Mapoly0029s0099' => 'mpo', 'MBI07_g24742_MAGBIO' => 'mbi', 'MBI10_g27988_MAGBIO' => 'mbi', 'MBI11_g13057_MAGBIO' => 'mbi', 'MD02G1137200' => 'mdo', 'MD06G1137200' => 'mdo', 'MD07G1122300' => 'mdo', 'MD09G1078200' => 'mdo', 'MD13G1123700' => 'mdo', 'MD14G1151900' => 'mdo', 'MD17G1030900' => 'mdo', 'MD17G1068200' => 'mdo', 'MD17G1068600' => 'mdo', 'Medtr3g077540' => 'mtr', 'Medtr4g105530' => 'mtr', 'Medtr8g076580' => 'mtr', 'Medtr8g076590' => 'mtr', 'Medtr8g096410' => 'mtr', 'MELO3C016411.2' => 'cme', 'MELO3C017780.2' => 'cme', 'MELO3C022560.2' => 'cme', 'MELO3C026187.2' => 'cme', 'MELO3C026286.2' => 'cme', 'MELO3C032854.2' => 'cme', 'Migut.H02495' => 'egut', 'Migut.I00561' => 'egut', 'Migut.K01015' => 'egut', 'Migut.K01016' => 'egut', 'Migut.L00743' => 'egut', 'Migut.L00744' => 'egut', 'Migut.L00746' => 'egut', 'Migut.L00798' => 'egut', 'Migut.L00799' => 'egut', 'Migut.N02096' => 'egut', 'MSTRG.11259' => 'ama', 'MSTRG.23142' => 'ama', 'MSTRG.2499' => 'ama', 'Nitab4.5_0000003g0730' => 'nta', 'Nitab4.5_0000137g0020' => 'nta', 'Nitab4.5_0000721g0210' => 'nta', 'Nitab4.5_0000723g0050' => 'nta', 'Nitab4.5_0000913g0070' => 'nta', 'Nitab4.5_0001332g0040' => 'nta', 'Nitab4.5_0001771g0050' => 'nta', 'Nitab4.5_0001918g0050' => 'nta', 'Nitab4.5_0002686g0030' => 'nta', 'Nitab4.5_0003156g0020' => 'nta', 'Nitab4.5_0003383g0040' => 'nta', 'Nitab4.5_0003918g0010' => 'nta', 'Nitab4.5_0006760g0010' => 'nta', 'Nn1g05981' => 'nnu', 'Nn1g06288' => 'nnu', 'Nn3g16371' => 'nnu', 'Nn3g16786' => 'nnu', 'Nn4g22232' => 'nnu', 'Oeu005144.1' => 'oeu', 'Oeu005145.1' => 'oeu', 'Oeu011348.1' => 'oeu', 'Oeu016415.1' => 'oeu', 'Oeu023501.1' => 'oeu', 'Oeu044473.1' => 'oeu', 'Oeu048892.2' => 'oeu', 'Os01g0549200' => 'osa', 'Os02g0469300' => 'osa', 'Os04g0311100' => 'osa', 'Os06g0474900' => 'osa', 'Os10g0181700' => 'osa', 'Os11g0454800' => 'osa', 'Peaxi162Scf00037g00714' => 'pax', 'Peaxi162Scf00084g01217' => 'pax', 'Peaxi162Scf00257g00217' => 'pax', 'Peaxi162Scf00516g00215' => 'pax', 'Peaxi162Scf00689g00123' => 'pax', 'PGR044G2719' => 'pgr', 'PGR083G1360' => 'pgr', 'PGR102G2849' => 'pgr', 'PGR119G2534' => 'pgr', 'PGSC0003DMG400003538' => 'stu', 'PGSC0003DMG400028138' => 'stu', 'PGSC0003DMG400031732' => 'stu', 'PGSC0003DMG400038165' => 'stu', 'Phvul.002G284600' => 'pvu', 'Phvul.003G258200' => 'pvu', 'Phvul.009G176500' => 'pvu', 'Potri.003G167201' => 'ptr', 'Potri.005G118400' => 'ptr', 'Potri.012G089000' => 'ptr', 'Potri.012G102800' => 'ptr', 'Potri.015G079400' => 'ptr', 'Potri.015G100900' => 'ptr', 'Pp3c14_9810' => 'ppa', 'Pp3c15_10450' => 'ppa', 'Pp3c20_19150' => 'ppa', 'Pp3c23_12740' => 'ppa', 'Pp3c23_6310' => 'ppa', 'Pp3c24_3720' => 'ppa', 'Pp3c27_2580' => 'ppa', 'Pp3c9_8990' => 'ppa', 'PRCOL_00002854' => 'pco', 'Prupe.1G221200' => 'ppe', 'Prupe.3G289000' => 'ppe', 'Prupe.5G147000' => 'ppe', 'Prupe.6G157300' => 'ppe', 'Prupe.7G163400' => 'ppe', 'Psat0s2177g0040' => 'psa', 'Psat3g174760' => 'psa', 'Psat3g192160' => 'psa', 'Psat4g058520' => 'psa', 'Psat4g096840' => 'psa', 'Psat7g037320' => 'psa', 'PSO017G1274' => 'pso', 'PSO017G5166' => 'pso', 'PSO063G4558' => 'pso', 'PSO170G4458' => 'pso', 'PSO170G5005' => 'pso', 'PSO210G6156' => 'pso', 'PSO210G6635' => 'pso', 'PSO210G7397' => 'pso', 'PSO210G7700' => 'pso', 'PSO455G0035' => 'pso', 'PSO455G0180' => 'pso', 'PSO478G4515' => 'pso', 'PSO832G1305' => 'pso', 'PSO832G3489' => 'pso', 'QL02p075247' => 'qlo', 'QL03p051148' => 'qlo', 'QL05p010313' => 'qlo', 'QL06p034627' => 'qlo', 'QL10p001889' => 'qlo', 'QL10p010846' => 'qlo', 'RcHm_v2.0_Chr1g0350621' => 'rch', 'RcHm_v2.0_Chr1g0350641' => 'rch', 'RcHm_v2.0_Chr2g0092891' => 'rch', 'RcHm_v2.0_Chr2g0100251' => 'rch', 'RcHm_v2.0_Chr2g0158661' => 'rch', 'RcHm_v2.0_Chr2g0172741' => 'rch', 'RcHm_v2.0_Chr4g0429571' => 'rch', 'RcHm_v2.0_Chr5g0042471' => 'rch', 'RcHm_v2.0_Chr7g0189451' => 'rch', 'Rhsim08G0052000' => 'rsi', 'Rhsim08G0174400' => 'rsi', 'Rhsim08G0193200' => 'rsi', 'Rhsim10G0214800' => 'rsi', 'Rhsim10G0214900' => 'rsi', 'Rhsim10G0215000' => 'rsi', 'Rhsim12G0022900' => 'rsi', 'Rhsim12G0177500' => 'rsi', 'Rhsim12G0177700' => 'rsi', 'Sabra03G0122600' => 'sbr', 'Sabra05G0097400' => 'sbr', 'Sabra12G0064100' => 'sbr', 'Sabra15G0121300' => 'sbr', 'SalBow2G0642' => 'sbo', 'SalBow5G2667' => 'sbo', 'SalBow5G4873' => 'sbo', 'SalBow8G2395' => 'sbo', 'Sc03g0003290' => 'sci', 'Sc10g0010130' => 'sci', 'Sc22g0003650' => 'sci', 'Sed0001603' => 'sed', 'Sed0004259' => 'sed', 'Sed0006789' => 'sed', 'Sed0011838' => 'sed', 'Sed0012964' => 'sed', 'Sed0016383' => 'sed', 'Sed0019010' => 'sed', 'Sed0020188' => 'sed', 'SEGI_04702' => 'sgi', 'SEGI_17231' => 'sgi', 'SEGI_18877' => 'sgi', 'SEGI_25196' => 'sgi', 'SEGI_25515' => 'sgi', 'SEGI_28445' => 'sgi', 'SEGI_37452' => 'sgi', 'SGA_v2.0_scaffold188G40336' => 'sas', 'SGA_v2.0_scaffold228G43247' => 'sas', 'SGA_v2.0_scaffold280G46853' => 'sas', 'SGA_v2.0_scaffold34G13808' => 'sas', 'SGA_v2.0_scaffold40G15576' => 'sas', 'SGA_v2.0_scaffold611G53188' => 'sas', 'SGA_v2.0_scaffold78G25461' => 'sas', 'SGA_v2.0_scaffold90G27888' => 'sas', 'SHI08601' => 'shi', 'SHI08606' => 'shi', 'SHI17117' => 'shi', 'SHI17119' => 'shi', 'SMO118G0201' => 'smo', 'SMO169G0247' => 'smo', 'SMO176G0006' => 'smo', 'SMO176G0015' => 'smo', 'SMO202G0006' => 'smo', 'SMO240G0050' => 'smo', 'SMO286G0009' => 'smo', 'SMO338G0033' => 'smo', 'SMO356G0533' => 'smo', 'SMO364G0382' => 'smo', 'SMO367G0166' => 'smo', 'SMO367G1098' => 'smo', 'Solyc01g009920.3' => 'sly', 'Solyc01g099300.3' => 'sly', 'Solyc02g084700.3' => 'sly', 'Solyc03g097520.3' => 'sly', 'Solyc06g071580.3' => 'sly', 'Solyc10g081760.3' => 'sly', 'Sopen01g005480' => 'spe', 'Sopen01g042850' => 'spe', 'Sopen02g029370' => 'spe', 'Sopen03g028280' => 'spe', 'Sopen06g027870' => 'spe', 'Sopen10g032270' => 'spe', 'Sp5g18180' => 'spa', 'Sp6g12880' => 'spa', 'Sp6g30850' => 'spa', 'Sp7g22960' => 'spa', 'Sp7g34010' => 'spa', 'SpUn1326_0010' => 'spa', 'TAR371G0242' => 'tar', 'TAR622G0638' => 'tar', 'TAR628G1548' => 'tar', 'TAR629G1079' => 'tar', 'TAR629G3413' => 'tar', 'THA.LOC104804249' => 'tha', 'THA.LOC104808315' => 'tha', 'THA.LOC104809238' => 'tha', 'THA.LOC104825484' => 'tha', 'Thecc.01G025500' => 'tca', 'Thecc.03G015800' => 'tca', 'Thecc.03G018000' => 'tca', 'Thecc.03G134800' => 'tca', 'Thecc.04G014700' => 'tca', 'Thhalv10006991m.g' => 'esa', 'Thhalv10012707m.g' => 'esa', 'Thhalv10015739m.g' => 'esa', 'Thhalv10024553m.g' => 'esa', 'Thhalv10024673m.g' => 'esa', 'Thhalv10029187m.g' => 'esa', 'TPR.G12971' => 'tpr', 'TPR.G29396' => 'tpr', 'TPR.G33376' => 'tpr', 'TPR.G35508' => 'tpr', 'TPR.G35516' => 'tpr', 'TPR.G37317' => 'tpr', 'TPR.G37389' => 'tpr', 'TPR.G37523' => 'tpr', 'TPR.G559' => 'tpr', 'TWI14G0070' => 'twi', 'TWI14G0729' => 'twi', 'TWI18G0596' => 'twi', 'TWI39G0780' => 'twi', 'TWI39G0850' => 'twi', 'TWI73G1052' => 'twi', 'unitig_52.g17485' => 'ugi', 'unitig_61.g26355' => 'ugi', 'vmacro01040' => 'vma', 'vmacro16731' => 'vma', 'vmacro18270' => 'vma', 'vmacro19142' => 'vma', 'vmacro19407' => 'vma', 'vmacro19408' => 'vma', 'vmacro21899' => 'vma', 'vmacro21900' => 'vma', 'vmacro21901' => 'vma', 'VMungo0251G0490' => 'vmu', 'VMungo0251G1748' => 'vmu', 'VMungo1309G0421' => 'vmu', 'Zm00001eb086500' => 'zma', 'Zm00001eb150680' => 'zma', 'Zm00001eb162330' => 'zma', 'Zm00001eb203130' => 'zma', 'Zm00001eb369480' => 'zma', 'Zm00001eb382340' => 'zma', 'Zm00001eb416360' => 'zma' ) $gf_id = 'HOM05D000902' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000902' ) $data_identifier = 'HOM05D000902' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 13, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 10, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 6, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 9, 'hma' => (int) 12, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 4, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 6, 'ppa' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 6, 'rch' => (int) 9, 'rsi' => (int) 9, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 12, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 3, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416360' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000902', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '663', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02470' => 'bna', 'A01p16260' => 'bna', 'A02p01680' => 'bna', 'A03p16600' => 'bna', 'A03p55660' => 'bna', 'A03p64160' => 'bna', 'A03p64170' => 'bna', 'A08p31900' => 'bna', 'A09p59530' => 'bna', 'A10p08230' => 'bna', 'A10p25090' => 'bna', 'Aa31LG3G7100' => 'aar', 'Aa31LG3G7110' => 'aar', 'Aa31LG6G13160' => 'aar', 'Aa31LG7G10770' => 'aar', 'Aa31LG7G3830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2723' => 'aag', 'Actinidia08045' => 'ach', 'Actinidia08888' => 'ach', 'Actinidia18333' => 'ach', 'Actinidia19334' => 'ach', 'Actinidia25552' => 'ach', 'Actinidia26089' => 'ach', 'Actinidia30615' => 'ach', 'Actinidia30616' => 'ach', 'Actinidia33083' => 'ach', 'Actinidia35762' => 'ach', 'Ah.02g110620' => 'amhyb', 'Ah.11g046390' => 'amhyb', 'AL1G31670' => 'aly', 'AL6G23730' => 'aly', 'AL7G14740' => 'aly', 'AL7G14750' => 'aly', 'AL7G14760' => 'aly', 'AL7G28220' => 'aly', 'AL8G24940' => 'aly', 'Aqoxy3G01665' => 'aox', 'Aqoxy3G02853' => 'aox', 'Aqoxy5G01513' => 'aox', 'Aqoxy5G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8SKA4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ75LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKDA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0LJZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7REX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZP4YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWX7I5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2QKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS0L9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPCD8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q161UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC7XCF' => 'arhy', 'AT1G19100' => 'ath', 'AT4G24970' => 'ath', 'AT4G36270' => 'ath', 'AT4G36280' => 'ath', 'AT4G36290' => 'ath', 'AT5G13130' => 'ath', 'AT5G50780' => 'ath', 'ATR0582G266' => 'atr', 'ATR0661G195' => 'atr', 'ATR1152G031' => 'atr', 'Atru.chr11.2382' => 'acertr', 'Atru.chr12.2337' => 'acertr', 'Atru.chr3.744' => 'acertr', 'Atru.chr6.1870' => 'acertr', 'Atru.chr9.2515' => 'acertr', 'AUR62004120' => 'cqu', 'AUR62005667' => 'cqu', 'AUR62007634' => 'cqu', 'AUR62008186' => 'cqu', 'AUR62008187' => 'cqu', 'AUR62008188' => 'cqu', 'AUR62027954' => 'cqu', 'AUR62028766' => 'cqu', 'AUR62028767' => 'cqu', 'AUR62028768' => 'cqu', 'AUR62028886' => 'cqu', 'AUR62029563' => 'cqu', 'AUR62038832' => 'cqu', 'BcaB01g04149' => 'bca', 'BcaB03g12940' => 'bca', 'BcaB03g13090' => 'bca', 'BcaB03g14466' => 'bca', 'BcaB05g24035' => 'bca', 'BcaC01g06050' => 'bca', 'BcaC04g19148' => 'bca', 'BcaC04g20761' => 'bca', 'BcaC06g32845' => 'bca', 'BcaC07g41274' => 'bca', 'BcaC09g50827' => 'bca', 'BcaNung00741' => 'bca', 'BcaNung00742' => 'bca', 'BcaNung01859' => 'bca', 'BcaNung03985' => 'bca', 'BcaNung03989' => 'bca', 'BcaNung05661' => 'bca', 'BolC1t00257H' => 'bol', 'BolC1t01956H' => 'bol', 'BolC2t06534H' => 'bol', 'BolC3t14334H' => 'bol', 'BolC5t30451H' => 'bol', 'BolC7t45880H' => 'bol', 'BolC7t46586H' => 'bol', 'BolC8t49301H' => 'bol', 'BolC8t51837H' => 'bol', 'BolC9t56822H' => 'bol', 'BolC9t59235H' => 'bol', 'BraA01t00234Z' => 'bra', 'BraA01t01563Z' => 'bra', 'BraA02t05147Z' => 'bra', 'BraA03t10947Z' => 'bra', 'BraA03t14633Z' => 'bra', 'BraA08t35112Z' => 'bra', 'BraA09t41330Z' => 'bra', 'BraA10t44570Z' => 'bra', 'C01p02670' => 'bna', 'C01p20260' => 'bna', 'C02p05890' => 'bna', 'C03p19530' => 'bna', 'C05p17470' => 'bna', 'C07p53900' => 'bna', 'C07p61630' => 'bna', 'C08p16800' => 'bna', 'C08p42810' => 'bna', 'C09p39480' => 'bna', 'C09p63980' => 'bna', 'CAN.G1001.7' => 'can', 'CAN.G1034.55' => 'can', 'CAN.G143.7' => 'can', 'CAN.G3340.1' => 'can', 'CAN.G358.19' => 'can', 'CAN.G373.2' => 'can', 'CAN.G674.16' => 'can', 'CAN.G674.17' => 'can', 'CAN.G674.18' => 'can', 'CAN.G732.2' => 'can', 'CAN.G732.3' => 'can', 'CAN.G993.39' => 'can', 'CANSAT01G2052' => 'cansat', 'CANSAT80G0070' => 'cansat', 'CANSAT80G0483' => 'cansat', 'CANSAT80G0625' => 'cansat', 'CARHR019690' => 'chi', 'CARHR080280' => 'chi', 'CARHR152750' => 'chi', 'CARHR152760' => 'chi', 'CARHR152770' => 'chi', 'CARHR200340' => 'chi', 'CARHR232370' => 'chi', 'CARHR244670' => 'chi', 'CARHR244680' => 'chi', 'CARHR257520' => 'chi', 'Carub.0001s1872' => 'cru', 'Carub.0006s1130' => 'cru', 'Carub.0007s0396' => 'cru', 'Carub.0007s0397' => 'cru', 'Carub.0007s1608' => 'cru', 'Carub.0008s1068' => 'cru', 'Carub.0008s1077' => 'cru', 'Ca_16158_v3' => 'car', 'Ca_17571_v3' => 'car', 'Ca_21936_v3' => 'car', 'Ca_22350_v3' => 'car', 'CBR_g22445' => 'cbr', 'CBR_g26290' => 'cbr', 'Cc04_g09610' => 'ccan', 'Cc04_g12280' => 'ccan', 'Cc07_g10230' => 'ccan', 'CDE02G0093' => 'cde', 'CDE02G0701' => 'cde', 'CDE04G1050' => 'cde', 'CDE05G1833' => 'cde', 'CDE05G3058' => 'cde', 'CDE05G3380' => 'cde', 'CDE06G0536' => 'cde', 'Cfa006923' => 'cfa', 'Cfa009402' => 'cfa', 'Cfa018751' => 'cfa', 'Cfa019164' => 'cfa', 'Cfa022935' => 'cfa', 'Ciclev10019081m.g' => 'ccl', 'Ciclev10025076m.g' => 'ccl', 'Ciclev10030712m.g' => 'ccl', 'Ciclev10033760m.g' => 'ccl', 'CiPaw.05G105600' => 'cil', 'CiPaw.08G136700' => 'cil', 'CiPaw.11G003900' => 'cil', 'CiPaw.11G023700' => 'cil', 'CiPaw.12G003700' => 'cil', 'ClCG06G017100' => 'cla', 'ClCG06G018110' => 'cla', 'ClCG07G008800' => 'cla', 'ClCG07G015330' => 'cla', 'COL.COLO4_13698' => 'col', 'COL.COLO4_16659' => 'col', 'COL.COLO4_21986' => 'col', 'COL.COLO4_24049' => 'col', 'COL.COLO4_29061' => 'col', 'COL.COLO4_29075' => 'col', 'COL.COLO4_30094' => 'col', 'Cpa.g.c33689' => 'cpa', 'Cpa.g.sc108.39' => 'cpa', 'Cpa.g.sc108.41' => 'cpa', 'Cpa.g.sc1163.1' => 'cpa', 'Cpa.g.sc4.155' => 'cpa', 'Cpa.g.sc6.194' => 'cpa', 'CsaV3_1G000340' => 'csa', 'CsaV3_1G001400' => 'csa', 'CsaV3_4G002220' => 'csa', 'CsaV3_4G005370' => 'csa', 'CSS0007487' => 'camsi', 'CSS0008066' => 'camsi', 'CSS0009120' => 'camsi', 'CSS0015512' => 'camsi', 'CSS0022409' => 'camsi', 'CSS0025358' => 'camsi', 'CSS0044547' => 'camsi', 'DCAR_013057' => 'dca', 'DCAR_015058' => 'dca', 'DCAR_016027' => 'dca', 'DCAR_017327' => 'dca', 'DCAR_020743' => 'dca', 'DCAR_026157' => 'dca', 'DCAR_032339' => 'dca', 'DCAR_032340' => 'dca', 'Dinv11200' => 'din', 'Dinv11201' => 'din', 'Dinv20631' => 'din', 'Dinv23182' => 'din', 'Dinv33466' => 'din', 'Dinv33583' => 'din', 'Dinv38565' => 'din', 'Duzib068G0200' => 'dzi', 'Duzib147G0132' => 'dzi', 'Duzib147G0635' => 'dzi', 'Duzib205G1670' => 'dzi', 'Duzib251G0606' => 'dzi', 'ECA232G3336' => 'eca', 'ECA232G3763' => 'eca', 'ECA232G4845' => 'eca', 'ECA234G1607' => 'eca', 'ECA246G0932' => 'eca', 'ECA247G0781' => 'eca', 'ECA247G1932' => 'eca', 'ECA247G2079' => 'eca', 'ECA247G3338' => 'eca', 'ECA247G4115' => 'eca', 'EL10Ac3g06552' => 'bvu', 'EL10Ac5g10721' => 'bvu', 'EL10Ac5g10722' => 'bvu', 'EL10Ac5g10723' => 'bvu', 'EL10Ac5g11361' => 'bvu', 'EL10Ac6g13553' => 'bvu', 'EL10As8g23872' => 'bvu', 'Eucgr.B00250' => 'egr', 'Eucgr.B00251' => 'egr', 'Eucgr.B03533' => 'egr', 'Eucgr.I02381' => 'egr', 'Eucgr.K02700' => 'egr', 'FAN02G0174' => 'fan', 'FAN02G3146' => 'fan', 'FAN04G1672' => 'fan', 'FAN04G2273' => 'fan', 'FAN05G2791' => 'fan', 'FAN05G4035' => 'fan', 'FAN07G0834' => 'fan', 'FAN08G1198' => 'fan', 'FAN09G4182' => 'fan', 'FAN12G0496' => 'fan', 'FAN13G1027' => 'fan', 'FAN13G2951' => 'fan', 'FAN14G0705' => 'fan', 'FAN14G0720' => 'fan', 'FAN17G0201' => 'fan', 'FAN17G2665' => 'fan', 'FAN18G1456' => 'fan', 'FAN18G1525' => 'fan', 'FAN18G3500' => 'fan', 'FAN28G2670' => 'fan', 'FvH4_1g12391' => 'fve', 'FvH4_4g23220' => 'fve', 'FvH4_5g08810' => 'fve', 'FvH4_5g28960' => 'fve', 'FvH4_6g42820' => 'fve', 'FvH4_6g51110' => 'fve', 'Glyma.02G051802' => 'gma', 'Glyma.04G185300' => 'gma', 'Glyma.05G202900' => 'gma', 'Glyma.08G010300' => 'gma', 'Glyma.16G131900' => 'gma', 'Glyma.17G087900' => 'gma', 'Gohir.A07G048600' => 'ghi', 'Gohir.A11G179000' => 'ghi', 'Gohir.A12G140900' => 'ghi', 'Gohir.A12G140950' => 'ghi', 'Gohir.A12G191700' => 'ghi', 'Gohir.A13G086300' => 'ghi', 'Gohir.D07G052900' => 'ghi', 'Gohir.D11G186600' => 'ghi', 'Gohir.D12G145575' => 'ghi', 'Gohir.D12G145650' => 'ghi', 'Gohir.D12G145725' => 'ghi', 'Gohir.D12G194050' => 'ghi', 'Gohir.D13G091800' => 'ghi', 'Gorai.001G055900' => 'gra', 'Gorai.007G198400' => 'gra', 'Gorai.008G157000' => 'gra', 'Gorai.008G157100' => 'gra', 'Gorai.008G208700' => 'gra', 'Gorai.010G138700' => 'gra', 'GSVIVG01000977001' => 'vvi', 'GSVIVG01007708001' => 'vvi', 'GSVIVG01008587001' => 'vvi', 'GSVIVG01018849001' => 'vvi', 'GSVIVG01032432001' => 'vvi', 'HanXRQChr02g0034131' => 'han', 'HanXRQChr02g0035981' => 'han', 'HanXRQChr02g0035991' => 'han', 'HanXRQChr05g0155611' => 'han', 'HanXRQChr05g0155621' => 'han', 'HanXRQChr08g0236501' => 'han', 'HanXRQChr09g0261321' => 'han', 'HanXRQChr09g0272081' => 'han', 'HanXRQChr10g0310741' => 'han', 'HanXRQChr11g0325591' => 'han', 'HanXRQChr12g0385691' => 'han', 'HanXRQChr13g0387801' => 'han', 'HanXRQChr15g0463011' => 'han', 'Haze_03826' => 'cav', 'Haze_03827' => 'cav', 'Haze_07183' => 'cav', 'Haze_07537' => 'cav', 'Haze_07539' => 'cav', 'Haze_12461' => 'cav', 'Haze_16115' => 'cav', 'Haze_16808' => 'cav', 'Haze_18531' => 'cav', 'Hma1.2p1_0046F.1_g026700' => 'hma', 'Hma1.2p1_0046F.1_g026710' => 'hma', 'Hma1.2p1_0168F.1_g074340' => 'hma', 'Hma1.2p1_0266F.1_g107030' => 'hma', 'Hma1.2p1_0266F.1_g107060' => 'hma', 'Hma1.2p1_0275F.1_g110510' => 'hma', 'Hma1.2p1_0592F.1_g185490' => 'hma', 'Hma1.2p1_0592F.1_g185500' => 'hma', 'Hma1.2p1_0592F.1_g185510' => 'hma', 'Hma1.2p1_0592F.1_g185520' => 'hma', 'Hma1.2p1_0592F.1_g185530' => 'hma', 'Hma1.2p1_0818F.1_g223450' => 'hma', 'HPP92_009708' => 'vpl', 'HPP92_009793' => 'vpl', 'HPP92_009796' => 'vpl', 'HPP92_009797' => 'vpl', 'HPP92_014940' => 'vpl', 'HPP92_014988' => 'vpl', 'Hund02463' => 'sun', 'Hund02760' => 'sun', 'Hund05071' => 'sun', 'Hund10108' => 'sun', 'Hund11204' => 'sun', 'Hund14016' => 'sun', 'Hund16464' => 'sun', 'Lalb_Chr09g0333391' => 'lal', 'Lalb_Chr11g0070461' => 'lal', 'Lalb_Chr12g0201671' => 'lal', 'Lalb_Chr13g0297161' => 'lal', 'Lj1g0002823' => 'lja', 'Lj3C1074T6' => 'lonja', 'Lj4A212T28' => 'lonja', 'Lj4g0005516' => 'lja', 'Lj4g0013705' => 'lja', 'Lj4g0027865' => 'lja', 'Lj5C92G16' => 'lonja', 'Lj5C92T12' => 'lonja', 'Lj7C596T3' => 'lonja', 'Lj9A446G59' => 'lonja', 'Lj9A482G21' => 'lonja', 'Lsat_1_v5_gn_1_28261' => 'lsa', 'Lsat_1_v5_gn_1_28281' => 'lsa', 'Lsat_1_v5_gn_1_32721' => 'lsa', 'Lsat_1_v5_gn_4_151760' => 'lsa', 'Lsat_1_v5_gn_4_2120' => 'lsa', 'Lsat_1_v5_gn_4_75761' => 'lsa', 'Lsat_1_v5_gn_5_10920' => 'lsa', 'Manes.02G099900' => 'mes', 'Manes.11G096200' => 'mes', 'Manes.12G007200' => 'mes', 'Manes.14G048300' => 'mes', 'Manes.17G114700' => 'mes', 'Mapoly0002s0070' => 'mpo', 'Mapoly0029s0099' => 'mpo', 'MBI07_g24742_MAGBIO' => 'mbi', 'MBI10_g27988_MAGBIO' => 'mbi', 'MBI11_g13057_MAGBIO' => 'mbi', 'MD02G1137200' => 'mdo', 'MD06G1137200' => 'mdo', 'MD07G1122300' => 'mdo', 'MD09G1078200' => 'mdo', 'MD13G1123700' => 'mdo', 'MD14G1151900' => 'mdo', 'MD17G1030900' => 'mdo', 'MD17G1068200' => 'mdo', 'MD17G1068600' => 'mdo', 'Medtr3g077540' => 'mtr', 'Medtr4g105530' => 'mtr', 'Medtr8g076580' => 'mtr', 'Medtr8g076590' => 'mtr', 'Medtr8g096410' => 'mtr', 'MELO3C016411.2' => 'cme', 'MELO3C017780.2' => 'cme', 'MELO3C022560.2' => 'cme', 'MELO3C026187.2' => 'cme', 'MELO3C026286.2' => 'cme', 'MELO3C032854.2' => 'cme', 'Migut.H02495' => 'egut', 'Migut.I00561' => 'egut', 'Migut.K01015' => 'egut', 'Migut.K01016' => 'egut', 'Migut.L00743' => 'egut', 'Migut.L00744' => 'egut', 'Migut.L00746' => 'egut', 'Migut.L00798' => 'egut', 'Migut.L00799' => 'egut', 'Migut.N02096' => 'egut', 'MSTRG.11259' => 'ama', 'MSTRG.23142' => 'ama', 'MSTRG.2499' => 'ama', 'Nitab4.5_0000003g0730' => 'nta', 'Nitab4.5_0000137g0020' => 'nta', 'Nitab4.5_0000721g0210' => 'nta', 'Nitab4.5_0000723g0050' => 'nta', 'Nitab4.5_0000913g0070' => 'nta', 'Nitab4.5_0001332g0040' => 'nta', 'Nitab4.5_0001771g0050' => 'nta', 'Nitab4.5_0001918g0050' => 'nta', 'Nitab4.5_0002686g0030' => 'nta', 'Nitab4.5_0003156g0020' => 'nta', 'Nitab4.5_0003383g0040' => 'nta', 'Nitab4.5_0003918g0010' => 'nta', 'Nitab4.5_0006760g0010' => 'nta', 'Nn1g05981' => 'nnu', 'Nn1g06288' => 'nnu', 'Nn3g16371' => 'nnu', 'Nn3g16786' => 'nnu', 'Nn4g22232' => 'nnu', 'Oeu005144.1' => 'oeu', 'Oeu005145.1' => 'oeu', 'Oeu011348.1' => 'oeu', 'Oeu016415.1' => 'oeu', 'Oeu023501.1' => 'oeu', 'Oeu044473.1' => 'oeu', 'Oeu048892.2' => 'oeu', 'Os01g0549200' => 'osa', 'Os02g0469300' => 'osa', 'Os04g0311100' => 'osa', 'Os06g0474900' => 'osa', 'Os10g0181700' => 'osa', 'Os11g0454800' => 'osa', 'Peaxi162Scf00037g00714' => 'pax', 'Peaxi162Scf00084g01217' => 'pax', 'Peaxi162Scf00257g00217' => 'pax', 'Peaxi162Scf00516g00215' => 'pax', 'Peaxi162Scf00689g00123' => 'pax', 'PGR044G2719' => 'pgr', 'PGR083G1360' => 'pgr', 'PGR102G2849' => 'pgr', 'PGR119G2534' => 'pgr', 'PGSC0003DMG400003538' => 'stu', 'PGSC0003DMG400028138' => 'stu', 'PGSC0003DMG400031732' => 'stu', 'PGSC0003DMG400038165' => 'stu', 'Phvul.002G284600' => 'pvu', 'Phvul.003G258200' => 'pvu', 'Phvul.009G176500' => 'pvu', 'Potri.003G167201' => 'ptr', 'Potri.005G118400' => 'ptr', 'Potri.012G089000' => 'ptr', 'Potri.012G102800' => 'ptr', 'Potri.015G079400' => 'ptr', 'Potri.015G100900' => 'ptr', 'Pp3c14_9810' => 'ppa', 'Pp3c15_10450' => 'ppa', 'Pp3c20_19150' => 'ppa', 'Pp3c23_12740' => 'ppa', 'Pp3c23_6310' => 'ppa', 'Pp3c24_3720' => 'ppa', 'Pp3c27_2580' => 'ppa', 'Pp3c9_8990' => 'ppa', 'PRCOL_00002854' => 'pco', 'Prupe.1G221200' => 'ppe', 'Prupe.3G289000' => 'ppe', 'Prupe.5G147000' => 'ppe', 'Prupe.6G157300' => 'ppe', 'Prupe.7G163400' => 'ppe', 'Psat0s2177g0040' => 'psa', 'Psat3g174760' => 'psa', 'Psat3g192160' => 'psa', 'Psat4g058520' => 'psa', 'Psat4g096840' => 'psa', 'Psat7g037320' => 'psa', 'PSO017G1274' => 'pso', 'PSO017G5166' => 'pso', 'PSO063G4558' => 'pso', 'PSO170G4458' => 'pso', 'PSO170G5005' => 'pso', 'PSO210G6156' => 'pso', 'PSO210G6635' => 'pso', 'PSO210G7397' => 'pso', 'PSO210G7700' => 'pso', 'PSO455G0035' => 'pso', 'PSO455G0180' => 'pso', 'PSO478G4515' => 'pso', 'PSO832G1305' => 'pso', 'PSO832G3489' => 'pso', 'QL02p075247' => 'qlo', 'QL03p051148' => 'qlo', 'QL05p010313' => 'qlo', 'QL06p034627' => 'qlo', 'QL10p001889' => 'qlo', 'QL10p010846' => 'qlo', 'RcHm_v2.0_Chr1g0350621' => 'rch', 'RcHm_v2.0_Chr1g0350641' => 'rch', 'RcHm_v2.0_Chr2g0092891' => 'rch', 'RcHm_v2.0_Chr2g0100251' => 'rch', 'RcHm_v2.0_Chr2g0158661' => 'rch', 'RcHm_v2.0_Chr2g0172741' => 'rch', 'RcHm_v2.0_Chr4g0429571' => 'rch', 'RcHm_v2.0_Chr5g0042471' => 'rch', 'RcHm_v2.0_Chr7g0189451' => 'rch', 'Rhsim08G0052000' => 'rsi', 'Rhsim08G0174400' => 'rsi', 'Rhsim08G0193200' => 'rsi', 'Rhsim10G0214800' => 'rsi', 'Rhsim10G0214900' => 'rsi', 'Rhsim10G0215000' => 'rsi', 'Rhsim12G0022900' => 'rsi', 'Rhsim12G0177500' => 'rsi', 'Rhsim12G0177700' => 'rsi', 'Sabra03G0122600' => 'sbr', 'Sabra05G0097400' => 'sbr', 'Sabra12G0064100' => 'sbr', 'Sabra15G0121300' => 'sbr', 'SalBow2G0642' => 'sbo', 'SalBow5G2667' => 'sbo', 'SalBow5G4873' => 'sbo', 'SalBow8G2395' => 'sbo', 'Sc03g0003290' => 'sci', 'Sc10g0010130' => 'sci', 'Sc22g0003650' => 'sci', 'Sed0001603' => 'sed', 'Sed0004259' => 'sed', 'Sed0006789' => 'sed', 'Sed0011838' => 'sed', 'Sed0012964' => 'sed', 'Sed0016383' => 'sed', 'Sed0019010' => 'sed', 'Sed0020188' => 'sed', 'SEGI_04702' => 'sgi', 'SEGI_17231' => 'sgi', 'SEGI_18877' => 'sgi', 'SEGI_25196' => 'sgi', 'SEGI_25515' => 'sgi', 'SEGI_28445' => 'sgi', 'SEGI_37452' => 'sgi', 'SGA_v2.0_scaffold188G40336' => 'sas', 'SGA_v2.0_scaffold228G43247' => 'sas', 'SGA_v2.0_scaffold280G46853' => 'sas', 'SGA_v2.0_scaffold34G13808' => 'sas', 'SGA_v2.0_scaffold40G15576' => 'sas', 'SGA_v2.0_scaffold611G53188' => 'sas', 'SGA_v2.0_scaffold78G25461' => 'sas', 'SGA_v2.0_scaffold90G27888' => 'sas', 'SHI08601' => 'shi', 'SHI08606' => 'shi', 'SHI17117' => 'shi', 'SHI17119' => 'shi', 'SMO118G0201' => 'smo', 'SMO169G0247' => 'smo', 'SMO176G0006' => 'smo', 'SMO176G0015' => 'smo', 'SMO202G0006' => 'smo', 'SMO240G0050' => 'smo', 'SMO286G0009' => 'smo', 'SMO338G0033' => 'smo', 'SMO356G0533' => 'smo', 'SMO364G0382' => 'smo', 'SMO367G0166' => 'smo', 'SMO367G1098' => 'smo', 'Solyc01g009920.3' => 'sly', 'Solyc01g099300.3' => 'sly', 'Solyc02g084700.3' => 'sly', 'Solyc03g097520.3' => 'sly', 'Solyc06g071580.3' => 'sly', 'Solyc10g081760.3' => 'sly', 'Sopen01g005480' => 'spe', 'Sopen01g042850' => 'spe', 'Sopen02g029370' => 'spe', 'Sopen03g028280' => 'spe', 'Sopen06g027870' => 'spe', 'Sopen10g032270' => 'spe', 'Sp5g18180' => 'spa', 'Sp6g12880' => 'spa', 'Sp6g30850' => 'spa', 'Sp7g22960' => 'spa', 'Sp7g34010' => 'spa', 'SpUn1326_0010' => 'spa', 'TAR371G0242' => 'tar', 'TAR622G0638' => 'tar', 'TAR628G1548' => 'tar', 'TAR629G1079' => 'tar', 'TAR629G3413' => 'tar', 'THA.LOC104804249' => 'tha', 'THA.LOC104808315' => 'tha', 'THA.LOC104809238' => 'tha', 'THA.LOC104825484' => 'tha', 'Thecc.01G025500' => 'tca', 'Thecc.03G015800' => 'tca', 'Thecc.03G018000' => 'tca', 'Thecc.03G134800' => 'tca', 'Thecc.04G014700' => 'tca', 'Thhalv10006991m.g' => 'esa', 'Thhalv10012707m.g' => 'esa', 'Thhalv10015739m.g' => 'esa', 'Thhalv10024553m.g' => 'esa', 'Thhalv10024673m.g' => 'esa', 'Thhalv10029187m.g' => 'esa', 'TPR.G12971' => 'tpr', 'TPR.G29396' => 'tpr', 'TPR.G33376' => 'tpr', 'TPR.G35508' => 'tpr', 'TPR.G35516' => 'tpr', 'TPR.G37317' => 'tpr', 'TPR.G37389' => 'tpr', 'TPR.G37523' => 'tpr', 'TPR.G559' => 'tpr', 'TWI14G0070' => 'twi', 'TWI14G0729' => 'twi', 'TWI18G0596' => 'twi', 'TWI39G0780' => 'twi', 'TWI39G0850' => 'twi', 'TWI73G1052' => 'twi', 'unitig_52.g17485' => 'ugi', 'unitig_61.g26355' => 'ugi', 'vmacro01040' => 'vma', 'vmacro16731' => 'vma', 'vmacro18270' => 'vma', 'vmacro19142' => 'vma', 'vmacro19407' => 'vma', 'vmacro19408' => 'vma', 'vmacro21899' => 'vma', 'vmacro21900' => 'vma', 'vmacro21901' => 'vma', 'VMungo0251G0490' => 'vmu', 'VMungo0251G1748' => 'vmu', 'VMungo1309G0421' => 'vmu', 'Zm00001eb086500' => 'zma', 'Zm00001eb150680' => 'zma', 'Zm00001eb162330' => 'zma', 'Zm00001eb203130' => 'zma', 'Zm00001eb369480' => 'zma', 'Zm00001eb382340' => 'zma', 'Zm00001eb416360' => 'zma' ), 'gf_id' => 'HOM05D000902', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000902' ), 'data_identifier' => 'HOM05D000902', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000902', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '663', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02470' => 'bna', 'A01p16260' => 'bna', 'A02p01680' => 'bna', 'A03p16600' => 'bna', 'A03p55660' => 'bna', 'A03p64160' => 'bna', 'A03p64170' => 'bna', 'A08p31900' => 'bna', 'A09p59530' => 'bna', 'A10p08230' => 'bna', 'A10p25090' => 'bna', 'Aa31LG3G7100' => 'aar', 'Aa31LG3G7110' => 'aar', 'Aa31LG6G13160' => 'aar', 'Aa31LG7G10770' => 'aar', 'Aa31LG7G3830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2723' => 'aag', 'Actinidia08045' => 'ach', 'Actinidia08888' => 'ach', 'Actinidia18333' => 'ach', 'Actinidia19334' => 'ach', 'Actinidia25552' => 'ach', 'Actinidia26089' => 'ach', 'Actinidia30615' => 'ach', 'Actinidia30616' => 'ach', 'Actinidia33083' => 'ach', 'Actinidia35762' => 'ach', 'Ah.02g110620' => 'amhyb', 'Ah.11g046390' => 'amhyb', 'AL1G31670' => 'aly', 'AL6G23730' => 'aly', 'AL7G14740' => 'aly', 'AL7G14750' => 'aly', 'AL7G14760' => 'aly', 'AL7G28220' => 'aly', 'AL8G24940' => 'aly', 'Aqoxy3G01665' => 'aox', 'Aqoxy3G02853' => 'aox', 'Aqoxy5G01513' => 'aox', 'Aqoxy5G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8SKA4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ75LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKDA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0LJZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7REX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZP4YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWX7I5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2QKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS0L9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPCD8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q161UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC7XCF' => 'arhy', 'AT1G19100' => 'ath', 'AT4G24970' => 'ath', 'AT4G36270' => 'ath', 'AT4G36280' => 'ath', 'AT4G36290' => 'ath', 'AT5G13130' => 'ath', 'AT5G50780' => 'ath', 'ATR0582G266' => 'atr', 'ATR0661G195' => 'atr', 'ATR1152G031' => 'atr', 'Atru.chr11.2382' => 'acertr', 'Atru.chr12.2337' => 'acertr', 'Atru.chr3.744' => 'acertr', 'Atru.chr6.1870' => 'acertr', 'Atru.chr9.2515' => 'acertr', 'AUR62004120' => 'cqu', 'AUR62005667' => 'cqu', 'AUR62007634' => 'cqu', 'AUR62008186' => 'cqu', 'AUR62008187' => 'cqu', 'AUR62008188' => 'cqu', 'AUR62027954' => 'cqu', 'AUR62028766' => 'cqu', 'AUR62028767' => 'cqu', 'AUR62028768' => 'cqu', 'AUR62028886' => 'cqu', 'AUR62029563' => 'cqu', 'AUR62038832' => 'cqu', 'BcaB01g04149' => 'bca', 'BcaB03g12940' => 'bca', 'BcaB03g13090' => 'bca', 'BcaB03g14466' => 'bca', 'BcaB05g24035' => 'bca', 'BcaC01g06050' => 'bca', 'BcaC04g19148' => 'bca', 'BcaC04g20761' => 'bca', 'BcaC06g32845' => 'bca', 'BcaC07g41274' => 'bca', 'BcaC09g50827' => 'bca', 'BcaNung00741' => 'bca', 'BcaNung00742' => 'bca', 'BcaNung01859' => 'bca', 'BcaNung03985' => 'bca', 'BcaNung03989' => 'bca', 'BcaNung05661' => 'bca', 'BolC1t00257H' => 'bol', 'BolC1t01956H' => 'bol', 'BolC2t06534H' => 'bol', 'BolC3t14334H' => 'bol', 'BolC5t30451H' => 'bol', 'BolC7t45880H' => 'bol', 'BolC7t46586H' => 'bol', 'BolC8t49301H' => 'bol', 'BolC8t51837H' => 'bol', 'BolC9t56822H' => 'bol', 'BolC9t59235H' => 'bol', 'BraA01t00234Z' => 'bra', 'BraA01t01563Z' => 'bra', 'BraA02t05147Z' => 'bra', 'BraA03t10947Z' => 'bra', 'BraA03t14633Z' => 'bra', 'BraA08t35112Z' => 'bra', 'BraA09t41330Z' => 'bra', 'BraA10t44570Z' => 'bra', 'C01p02670' => 'bna', 'C01p20260' => 'bna', 'C02p05890' => 'bna', 'C03p19530' => 'bna', 'C05p17470' => 'bna', 'C07p53900' => 'bna', 'C07p61630' => 'bna', 'C08p16800' => 'bna', 'C08p42810' => 'bna', 'C09p39480' => 'bna', 'C09p63980' => 'bna', 'CAN.G1001.7' => 'can', 'CAN.G1034.55' => 'can', 'CAN.G143.7' => 'can', 'CAN.G3340.1' => 'can', 'CAN.G358.19' => 'can', 'CAN.G373.2' => 'can', 'CAN.G674.16' => 'can', 'CAN.G674.17' => 'can', 'CAN.G674.18' => 'can', 'CAN.G732.2' => 'can', 'CAN.G732.3' => 'can', 'CAN.G993.39' => 'can', 'CANSAT01G2052' => 'cansat', 'CANSAT80G0070' => 'cansat', 'CANSAT80G0483' => 'cansat', 'CANSAT80G0625' => 'cansat', 'CARHR019690' => 'chi', 'CARHR080280' => 'chi', 'CARHR152750' => 'chi', 'CARHR152760' => 'chi', 'CARHR152770' => 'chi', 'CARHR200340' => 'chi', 'CARHR232370' => 'chi', 'CARHR244670' => 'chi', 'CARHR244680' => 'chi', 'CARHR257520' => 'chi', 'Carub.0001s1872' => 'cru', 'Carub.0006s1130' => 'cru', 'Carub.0007s0396' => 'cru', 'Carub.0007s0397' => 'cru', 'Carub.0007s1608' => 'cru', 'Carub.0008s1068' => 'cru', 'Carub.0008s1077' => 'cru', 'Ca_16158_v3' => 'car', 'Ca_17571_v3' => 'car', 'Ca_21936_v3' => 'car', 'Ca_22350_v3' => 'car', 'CBR_g22445' => 'cbr', 'CBR_g26290' => 'cbr', 'Cc04_g09610' => 'ccan', 'Cc04_g12280' => 'ccan', 'Cc07_g10230' => 'ccan', 'CDE02G0093' => 'cde', 'CDE02G0701' => 'cde', 'CDE04G1050' => 'cde', 'CDE05G1833' => 'cde', 'CDE05G3058' => 'cde', 'CDE05G3380' => 'cde', 'CDE06G0536' => 'cde', 'Cfa006923' => 'cfa', 'Cfa009402' => 'cfa', 'Cfa018751' => 'cfa', 'Cfa019164' => 'cfa', 'Cfa022935' => 'cfa', 'Ciclev10019081m.g' => 'ccl', 'Ciclev10025076m.g' => 'ccl', 'Ciclev10030712m.g' => 'ccl', 'Ciclev10033760m.g' => 'ccl', 'CiPaw.05G105600' => 'cil', 'CiPaw.08G136700' => 'cil', 'CiPaw.11G003900' => 'cil', 'CiPaw.11G023700' => 'cil', 'CiPaw.12G003700' => 'cil', 'ClCG06G017100' => 'cla', 'ClCG06G018110' => 'cla', 'ClCG07G008800' => 'cla', 'ClCG07G015330' => 'cla', 'COL.COLO4_13698' => 'col', 'COL.COLO4_16659' => 'col', 'COL.COLO4_21986' => 'col', 'COL.COLO4_24049' => 'col', 'COL.COLO4_29061' => 'col', 'COL.COLO4_29075' => 'col', 'COL.COLO4_30094' => 'col', 'Cpa.g.c33689' => 'cpa', 'Cpa.g.sc108.39' => 'cpa', 'Cpa.g.sc108.41' => 'cpa', 'Cpa.g.sc1163.1' => 'cpa', 'Cpa.g.sc4.155' => 'cpa', 'Cpa.g.sc6.194' => 'cpa', 'CsaV3_1G000340' => 'csa', 'CsaV3_1G001400' => 'csa', 'CsaV3_4G002220' => 'csa', 'CsaV3_4G005370' => 'csa', 'CSS0007487' => 'camsi', 'CSS0008066' => 'camsi', 'CSS0009120' => 'camsi', 'CSS0015512' => 'camsi', 'CSS0022409' => 'camsi', 'CSS0025358' => 'camsi', 'CSS0044547' => 'camsi', 'DCAR_013057' => 'dca', 'DCAR_015058' => 'dca', 'DCAR_016027' => 'dca', 'DCAR_017327' => 'dca', 'DCAR_020743' => 'dca', 'DCAR_026157' => 'dca', 'DCAR_032339' => 'dca', 'DCAR_032340' => 'dca', 'Dinv11200' => 'din', 'Dinv11201' => 'din', 'Dinv20631' => 'din', 'Dinv23182' => 'din', 'Dinv33466' => 'din', 'Dinv33583' => 'din', 'Dinv38565' => 'din', 'Duzib068G0200' => 'dzi', 'Duzib147G0132' => 'dzi', 'Duzib147G0635' => 'dzi', 'Duzib205G1670' => 'dzi', 'Duzib251G0606' => 'dzi', 'ECA232G3336' => 'eca', 'ECA232G3763' => 'eca', 'ECA232G4845' => 'eca', 'ECA234G1607' => 'eca', 'ECA246G0932' => 'eca', 'ECA247G0781' => 'eca', 'ECA247G1932' => 'eca', 'ECA247G2079' => 'eca', 'ECA247G3338' => 'eca', 'ECA247G4115' => 'eca', 'EL10Ac3g06552' => 'bvu', 'EL10Ac5g10721' => 'bvu', 'EL10Ac5g10722' => 'bvu', 'EL10Ac5g10723' => 'bvu', 'EL10Ac5g11361' => 'bvu', 'EL10Ac6g13553' => 'bvu', 'EL10As8g23872' => 'bvu', 'Eucgr.B00250' => 'egr', 'Eucgr.B00251' => 'egr', 'Eucgr.B03533' => 'egr', 'Eucgr.I02381' => 'egr', 'Eucgr.K02700' => 'egr', 'FAN02G0174' => 'fan', 'FAN02G3146' => 'fan', 'FAN04G1672' => 'fan', 'FAN04G2273' => 'fan', 'FAN05G2791' => 'fan', 'FAN05G4035' => 'fan', 'FAN07G0834' => 'fan', 'FAN08G1198' => 'fan', 'FAN09G4182' => 'fan', 'FAN12G0496' => 'fan', 'FAN13G1027' => 'fan', 'FAN13G2951' => 'fan', 'FAN14G0705' => 'fan', 'FAN14G0720' => 'fan', 'FAN17G0201' => 'fan', 'FAN17G2665' => 'fan', 'FAN18G1456' => 'fan', 'FAN18G1525' => 'fan', 'FAN18G3500' => 'fan', 'FAN28G2670' => 'fan', 'FvH4_1g12391' => 'fve', 'FvH4_4g23220' => 'fve', 'FvH4_5g08810' => 'fve', 'FvH4_5g28960' => 'fve', 'FvH4_6g42820' => 'fve', 'FvH4_6g51110' => 'fve', 'Glyma.02G051802' => 'gma', 'Glyma.04G185300' => 'gma', 'Glyma.05G202900' => 'gma', 'Glyma.08G010300' => 'gma', 'Glyma.16G131900' => 'gma', 'Glyma.17G087900' => 'gma', 'Gohir.A07G048600' => 'ghi', 'Gohir.A11G179000' => 'ghi', 'Gohir.A12G140900' => 'ghi', 'Gohir.A12G140950' => 'ghi', 'Gohir.A12G191700' => 'ghi', 'Gohir.A13G086300' => 'ghi', 'Gohir.D07G052900' => 'ghi', 'Gohir.D11G186600' => 'ghi', 'Gohir.D12G145575' => 'ghi', 'Gohir.D12G145650' => 'ghi', 'Gohir.D12G145725' => 'ghi', 'Gohir.D12G194050' => 'ghi', 'Gohir.D13G091800' => 'ghi', 'Gorai.001G055900' => 'gra', 'Gorai.007G198400' => 'gra', 'Gorai.008G157000' => 'gra', 'Gorai.008G157100' => 'gra', 'Gorai.008G208700' => 'gra', 'Gorai.010G138700' => 'gra', 'GSVIVG01000977001' => 'vvi', 'GSVIVG01007708001' => 'vvi', 'GSVIVG01008587001' => 'vvi', 'GSVIVG01018849001' => 'vvi', 'GSVIVG01032432001' => 'vvi', 'HanXRQChr02g0034131' => 'han', 'HanXRQChr02g0035981' => 'han', 'HanXRQChr02g0035991' => 'han', 'HanXRQChr05g0155611' => 'han', 'HanXRQChr05g0155621' => 'han', 'HanXRQChr08g0236501' => 'han', 'HanXRQChr09g0261321' => 'han', 'HanXRQChr09g0272081' => 'han', 'HanXRQChr10g0310741' => 'han', 'HanXRQChr11g0325591' => 'han', 'HanXRQChr12g0385691' => 'han', 'HanXRQChr13g0387801' => 'han', 'HanXRQChr15g0463011' => 'han', 'Haze_03826' => 'cav', 'Haze_03827' => 'cav', 'Haze_07183' => 'cav', 'Haze_07537' => 'cav', 'Haze_07539' => 'cav', 'Haze_12461' => 'cav', 'Haze_16115' => 'cav', 'Haze_16808' => 'cav', 'Haze_18531' => 'cav', 'Hma1.2p1_0046F.1_g026700' => 'hma', 'Hma1.2p1_0046F.1_g026710' => 'hma', 'Hma1.2p1_0168F.1_g074340' => 'hma', 'Hma1.2p1_0266F.1_g107030' => 'hma', 'Hma1.2p1_0266F.1_g107060' => 'hma', 'Hma1.2p1_0275F.1_g110510' => 'hma', 'Hma1.2p1_0592F.1_g185490' => 'hma', 'Hma1.2p1_0592F.1_g185500' => 'hma', 'Hma1.2p1_0592F.1_g185510' => 'hma', 'Hma1.2p1_0592F.1_g185520' => 'hma', 'Hma1.2p1_0592F.1_g185530' => 'hma', 'Hma1.2p1_0818F.1_g223450' => 'hma', 'HPP92_009708' => 'vpl', 'HPP92_009793' => 'vpl', 'HPP92_009796' => 'vpl', 'HPP92_009797' => 'vpl', 'HPP92_014940' => 'vpl', 'HPP92_014988' => 'vpl', 'Hund02463' => 'sun', 'Hund02760' => 'sun', 'Hund05071' => 'sun', 'Hund10108' => 'sun', 'Hund11204' => 'sun', 'Hund14016' => 'sun', 'Hund16464' => 'sun', 'Lalb_Chr09g0333391' => 'lal', 'Lalb_Chr11g0070461' => 'lal', 'Lalb_Chr12g0201671' => 'lal', 'Lalb_Chr13g0297161' => 'lal', 'Lj1g0002823' => 'lja', 'Lj3C1074T6' => 'lonja', 'Lj4A212T28' => 'lonja', 'Lj4g0005516' => 'lja', 'Lj4g0013705' => 'lja', 'Lj4g0027865' => 'lja', 'Lj5C92G16' => 'lonja', 'Lj5C92T12' => 'lonja', 'Lj7C596T3' => 'lonja', 'Lj9A446G59' => 'lonja', 'Lj9A482G21' => 'lonja', 'Lsat_1_v5_gn_1_28261' => 'lsa', 'Lsat_1_v5_gn_1_28281' => 'lsa', 'Lsat_1_v5_gn_1_32721' => 'lsa', 'Lsat_1_v5_gn_4_151760' => 'lsa', 'Lsat_1_v5_gn_4_2120' => 'lsa', 'Lsat_1_v5_gn_4_75761' => 'lsa', 'Lsat_1_v5_gn_5_10920' => 'lsa', 'Manes.02G099900' => 'mes', 'Manes.11G096200' => 'mes', 'Manes.12G007200' => 'mes', 'Manes.14G048300' => 'mes', 'Manes.17G114700' => 'mes', 'Mapoly0002s0070' => 'mpo', 'Mapoly0029s0099' => 'mpo', 'MBI07_g24742_MAGBIO' => 'mbi', 'MBI10_g27988_MAGBIO' => 'mbi', 'MBI11_g13057_MAGBIO' => 'mbi', 'MD02G1137200' => 'mdo', 'MD06G1137200' => 'mdo', 'MD07G1122300' => 'mdo', 'MD09G1078200' => 'mdo', 'MD13G1123700' => 'mdo', 'MD14G1151900' => 'mdo', 'MD17G1030900' => 'mdo', 'MD17G1068200' => 'mdo', 'MD17G1068600' => 'mdo', 'Medtr3g077540' => 'mtr', 'Medtr4g105530' => 'mtr', 'Medtr8g076580' => 'mtr', 'Medtr8g076590' => 'mtr', 'Medtr8g096410' => 'mtr', 'MELO3C016411.2' => 'cme', 'MELO3C017780.2' => 'cme', 'MELO3C022560.2' => 'cme', 'MELO3C026187.2' => 'cme', 'MELO3C026286.2' => 'cme', 'MELO3C032854.2' => 'cme', 'Migut.H02495' => 'egut', 'Migut.I00561' => 'egut', 'Migut.K01015' => 'egut', 'Migut.K01016' => 'egut', 'Migut.L00743' => 'egut', 'Migut.L00744' => 'egut', 'Migut.L00746' => 'egut', 'Migut.L00798' => 'egut', 'Migut.L00799' => 'egut', 'Migut.N02096' => 'egut', 'MSTRG.11259' => 'ama', 'MSTRG.23142' => 'ama', 'MSTRG.2499' => 'ama', 'Nitab4.5_0000003g0730' => 'nta', 'Nitab4.5_0000137g0020' => 'nta', 'Nitab4.5_0000721g0210' => 'nta', 'Nitab4.5_0000723g0050' => 'nta', 'Nitab4.5_0000913g0070' => 'nta', 'Nitab4.5_0001332g0040' => 'nta', 'Nitab4.5_0001771g0050' => 'nta', 'Nitab4.5_0001918g0050' => 'nta', 'Nitab4.5_0002686g0030' => 'nta', 'Nitab4.5_0003156g0020' => 'nta', 'Nitab4.5_0003383g0040' => 'nta', 'Nitab4.5_0003918g0010' => 'nta', 'Nitab4.5_0006760g0010' => 'nta', 'Nn1g05981' => 'nnu', 'Nn1g06288' => 'nnu', 'Nn3g16371' => 'nnu', 'Nn3g16786' => 'nnu', 'Nn4g22232' => 'nnu', 'Oeu005144.1' => 'oeu', 'Oeu005145.1' => 'oeu', 'Oeu011348.1' => 'oeu', 'Oeu016415.1' => 'oeu', 'Oeu023501.1' => 'oeu', 'Oeu044473.1' => 'oeu', 'Oeu048892.2' => 'oeu', 'Os01g0549200' => 'osa', 'Os02g0469300' => 'osa', 'Os04g0311100' => 'osa', 'Os06g0474900' => 'osa', 'Os10g0181700' => 'osa', 'Os11g0454800' => 'osa', 'Peaxi162Scf00037g00714' => 'pax', 'Peaxi162Scf00084g01217' => 'pax', 'Peaxi162Scf00257g00217' => 'pax', 'Peaxi162Scf00516g00215' => 'pax', 'Peaxi162Scf00689g00123' => 'pax', 'PGR044G2719' => 'pgr', 'PGR083G1360' => 'pgr', 'PGR102G2849' => 'pgr', 'PGR119G2534' => 'pgr', 'PGSC0003DMG400003538' => 'stu', 'PGSC0003DMG400028138' => 'stu', 'PGSC0003DMG400031732' => 'stu', 'PGSC0003DMG400038165' => 'stu', 'Phvul.002G284600' => 'pvu', 'Phvul.003G258200' => 'pvu', 'Phvul.009G176500' => 'pvu', 'Potri.003G167201' => 'ptr', 'Potri.005G118400' => 'ptr', 'Potri.012G089000' => 'ptr', 'Potri.012G102800' => 'ptr', 'Potri.015G079400' => 'ptr', 'Potri.015G100900' => 'ptr', 'Pp3c14_9810' => 'ppa', 'Pp3c15_10450' => 'ppa', 'Pp3c20_19150' => 'ppa', 'Pp3c23_12740' => 'ppa', 'Pp3c23_6310' => 'ppa', 'Pp3c24_3720' => 'ppa', 'Pp3c27_2580' => 'ppa', 'Pp3c9_8990' => 'ppa', 'PRCOL_00002854' => 'pco', 'Prupe.1G221200' => 'ppe', 'Prupe.3G289000' => 'ppe', 'Prupe.5G147000' => 'ppe', 'Prupe.6G157300' => 'ppe', 'Prupe.7G163400' => 'ppe', 'Psat0s2177g0040' => 'psa', 'Psat3g174760' => 'psa', 'Psat3g192160' => 'psa', 'Psat4g058520' => 'psa', 'Psat4g096840' => 'psa', 'Psat7g037320' => 'psa', 'PSO017G1274' => 'pso', 'PSO017G5166' => 'pso', 'PSO063G4558' => 'pso', 'PSO170G4458' => 'pso', 'PSO170G5005' => 'pso', 'PSO210G6156' => 'pso', 'PSO210G6635' => 'pso', 'PSO210G7397' => 'pso', 'PSO210G7700' => 'pso', 'PSO455G0035' => 'pso', 'PSO455G0180' => 'pso', 'PSO478G4515' => 'pso', 'PSO832G1305' => 'pso', 'PSO832G3489' => 'pso', 'QL02p075247' => 'qlo', 'QL03p051148' => 'qlo', 'QL05p010313' => 'qlo', 'QL06p034627' => 'qlo', 'QL10p001889' => 'qlo', 'QL10p010846' => 'qlo', 'RcHm_v2.0_Chr1g0350621' => 'rch', 'RcHm_v2.0_Chr1g0350641' => 'rch', 'RcHm_v2.0_Chr2g0092891' => 'rch', 'RcHm_v2.0_Chr2g0100251' => 'rch', 'RcHm_v2.0_Chr2g0158661' => 'rch', 'RcHm_v2.0_Chr2g0172741' => 'rch', 'RcHm_v2.0_Chr4g0429571' => 'rch', 'RcHm_v2.0_Chr5g0042471' => 'rch', 'RcHm_v2.0_Chr7g0189451' => 'rch', 'Rhsim08G0052000' => 'rsi', 'Rhsim08G0174400' => 'rsi', 'Rhsim08G0193200' => 'rsi', 'Rhsim10G0214800' => 'rsi', 'Rhsim10G0214900' => 'rsi', 'Rhsim10G0215000' => 'rsi', 'Rhsim12G0022900' => 'rsi', 'Rhsim12G0177500' => 'rsi', 'Rhsim12G0177700' => 'rsi', 'Sabra03G0122600' => 'sbr', 'Sabra05G0097400' => 'sbr', 'Sabra12G0064100' => 'sbr', 'Sabra15G0121300' => 'sbr', 'SalBow2G0642' => 'sbo', 'SalBow5G2667' => 'sbo', 'SalBow5G4873' => 'sbo', 'SalBow8G2395' => 'sbo', 'Sc03g0003290' => 'sci', 'Sc10g0010130' => 'sci', 'Sc22g0003650' => 'sci', 'Sed0001603' => 'sed', 'Sed0004259' => 'sed', 'Sed0006789' => 'sed', 'Sed0011838' => 'sed', 'Sed0012964' => 'sed', 'Sed0016383' => 'sed', 'Sed0019010' => 'sed', 'Sed0020188' => 'sed', 'SEGI_04702' => 'sgi', 'SEGI_17231' => 'sgi', 'SEGI_18877' => 'sgi', 'SEGI_25196' => 'sgi', 'SEGI_25515' => 'sgi', 'SEGI_28445' => 'sgi', 'SEGI_37452' => 'sgi', 'SGA_v2.0_scaffold188G40336' => 'sas', 'SGA_v2.0_scaffold228G43247' => 'sas', 'SGA_v2.0_scaffold280G46853' => 'sas', 'SGA_v2.0_scaffold34G13808' => 'sas', 'SGA_v2.0_scaffold40G15576' => 'sas', 'SGA_v2.0_scaffold611G53188' => 'sas', 'SGA_v2.0_scaffold78G25461' => 'sas', 'SGA_v2.0_scaffold90G27888' => 'sas', 'SHI08601' => 'shi', 'SHI08606' => 'shi', 'SHI17117' => 'shi', 'SHI17119' => 'shi', 'SMO118G0201' => 'smo', 'SMO169G0247' => 'smo', 'SMO176G0006' => 'smo', 'SMO176G0015' => 'smo', 'SMO202G0006' => 'smo', 'SMO240G0050' => 'smo', 'SMO286G0009' => 'smo', 'SMO338G0033' => 'smo', 'SMO356G0533' => 'smo', 'SMO364G0382' => 'smo', 'SMO367G0166' => 'smo', 'SMO367G1098' => 'smo', 'Solyc01g009920.3' => 'sly', 'Solyc01g099300.3' => 'sly', 'Solyc02g084700.3' => 'sly', 'Solyc03g097520.3' => 'sly', 'Solyc06g071580.3' => 'sly', 'Solyc10g081760.3' => 'sly', 'Sopen01g005480' => 'spe', 'Sopen01g042850' => 'spe', 'Sopen02g029370' => 'spe', 'Sopen03g028280' => 'spe', 'Sopen06g027870' => 'spe', 'Sopen10g032270' => 'spe', 'Sp5g18180' => 'spa', 'Sp6g12880' => 'spa', 'Sp6g30850' => 'spa', 'Sp7g22960' => 'spa', 'Sp7g34010' => 'spa', 'SpUn1326_0010' => 'spa', 'TAR371G0242' => 'tar', 'TAR622G0638' => 'tar', 'TAR628G1548' => 'tar', 'TAR629G1079' => 'tar', 'TAR629G3413' => 'tar', 'THA.LOC104804249' => 'tha', 'THA.LOC104808315' => 'tha', 'THA.LOC104809238' => 'tha', 'THA.LOC104825484' => 'tha', 'Thecc.01G025500' => 'tca', 'Thecc.03G015800' => 'tca', 'Thecc.03G018000' => 'tca', 'Thecc.03G134800' => 'tca', 'Thecc.04G014700' => 'tca', 'Thhalv10006991m.g' => 'esa', 'Thhalv10012707m.g' => 'esa', 'Thhalv10015739m.g' => 'esa', 'Thhalv10024553m.g' => 'esa', 'Thhalv10024673m.g' => 'esa', 'Thhalv10029187m.g' => 'esa', 'TPR.G12971' => 'tpr', 'TPR.G29396' => 'tpr', 'TPR.G33376' => 'tpr', 'TPR.G35508' => 'tpr', 'TPR.G35516' => 'tpr', 'TPR.G37317' => 'tpr', 'TPR.G37389' => 'tpr', 'TPR.G37523' => 'tpr', 'TPR.G559' => 'tpr', 'TWI14G0070' => 'twi', 'TWI14G0729' => 'twi', 'TWI18G0596' => 'twi', 'TWI39G0780' => 'twi', 'TWI39G0850' => 'twi', 'TWI73G1052' => 'twi', 'unitig_52.g17485' => 'ugi', 'unitig_61.g26355' => 'ugi', 'vmacro01040' => 'vma', 'vmacro16731' => 'vma', 'vmacro18270' => 'vma', 'vmacro19142' => 'vma', 'vmacro19407' => 'vma', 'vmacro19408' => 'vma', 'vmacro21899' => 'vma', 'vmacro21900' => 'vma', 'vmacro21901' => 'vma', 'VMungo0251G0490' => 'vmu', 'VMungo0251G1748' => 'vmu', 'VMungo1309G0421' => 'vmu', 'Zm00001eb086500' => 'zma', 'Zm00001eb150680' => 'zma', 'Zm00001eb162330' => 'zma', 'Zm00001eb203130' => 'zma', 'Zm00001eb369480' => 'zma', 'Zm00001eb382340' => 'zma', 'Zm00001eb416360' => 'zma' ) $gf_id = 'HOM05D000902' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000902' ) $data_identifier = 'HOM05D000902' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 13, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 10, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 6, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 9, 'hma' => (int) 12, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 4, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 6, 'ppa' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 6, 'rch' => (int) 9, 'rsi' => (int) 9, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 12, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 3, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416360' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000902', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '663', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02470' => 'bna', 'A01p16260' => 'bna', 'A02p01680' => 'bna', 'A03p16600' => 'bna', 'A03p55660' => 'bna', 'A03p64160' => 'bna', 'A03p64170' => 'bna', 'A08p31900' => 'bna', 'A09p59530' => 'bna', 'A10p08230' => 'bna', 'A10p25090' => 'bna', 'Aa31LG3G7100' => 'aar', 'Aa31LG3G7110' => 'aar', 'Aa31LG6G13160' => 'aar', 'Aa31LG7G10770' => 'aar', 'Aa31LG7G3830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2723' => 'aag', 'Actinidia08045' => 'ach', 'Actinidia08888' => 'ach', 'Actinidia18333' => 'ach', 'Actinidia19334' => 'ach', 'Actinidia25552' => 'ach', 'Actinidia26089' => 'ach', 'Actinidia30615' => 'ach', 'Actinidia30616' => 'ach', 'Actinidia33083' => 'ach', 'Actinidia35762' => 'ach', 'Ah.02g110620' => 'amhyb', 'Ah.11g046390' => 'amhyb', 'AL1G31670' => 'aly', 'AL6G23730' => 'aly', 'AL7G14740' => 'aly', 'AL7G14750' => 'aly', 'AL7G14760' => 'aly', 'AL7G28220' => 'aly', 'AL8G24940' => 'aly', 'Aqoxy3G01665' => 'aox', 'Aqoxy3G02853' => 'aox', 'Aqoxy5G01513' => 'aox', 'Aqoxy5G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8SKA4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ75LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKDA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0LJZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7REX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZP4YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWX7I5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2QKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS0L9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPCD8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q161UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC7XCF' => 'arhy', 'AT1G19100' => 'ath', 'AT4G24970' => 'ath', 'AT4G36270' => 'ath', 'AT4G36280' => 'ath', 'AT4G36290' => 'ath', 'AT5G13130' => 'ath', 'AT5G50780' => 'ath', 'ATR0582G266' => 'atr', 'ATR0661G195' => 'atr', 'ATR1152G031' => 'atr', 'Atru.chr11.2382' => 'acertr', 'Atru.chr12.2337' => 'acertr', 'Atru.chr3.744' => 'acertr', 'Atru.chr6.1870' => 'acertr', 'Atru.chr9.2515' => 'acertr', 'AUR62004120' => 'cqu', 'AUR62005667' => 'cqu', 'AUR62007634' => 'cqu', 'AUR62008186' => 'cqu', 'AUR62008187' => 'cqu', 'AUR62008188' => 'cqu', 'AUR62027954' => 'cqu', 'AUR62028766' => 'cqu', 'AUR62028767' => 'cqu', 'AUR62028768' => 'cqu', 'AUR62028886' => 'cqu', 'AUR62029563' => 'cqu', 'AUR62038832' => 'cqu', 'BcaB01g04149' => 'bca', 'BcaB03g12940' => 'bca', 'BcaB03g13090' => 'bca', 'BcaB03g14466' => 'bca', 'BcaB05g24035' => 'bca', 'BcaC01g06050' => 'bca', 'BcaC04g19148' => 'bca', 'BcaC04g20761' => 'bca', 'BcaC06g32845' => 'bca', 'BcaC07g41274' => 'bca', 'BcaC09g50827' => 'bca', 'BcaNung00741' => 'bca', 'BcaNung00742' => 'bca', 'BcaNung01859' => 'bca', 'BcaNung03985' => 'bca', 'BcaNung03989' => 'bca', 'BcaNung05661' => 'bca', 'BolC1t00257H' => 'bol', 'BolC1t01956H' => 'bol', 'BolC2t06534H' => 'bol', 'BolC3t14334H' => 'bol', 'BolC5t30451H' => 'bol', 'BolC7t45880H' => 'bol', 'BolC7t46586H' => 'bol', 'BolC8t49301H' => 'bol', 'BolC8t51837H' => 'bol', 'BolC9t56822H' => 'bol', 'BolC9t59235H' => 'bol', 'BraA01t00234Z' => 'bra', 'BraA01t01563Z' => 'bra', 'BraA02t05147Z' => 'bra', 'BraA03t10947Z' => 'bra', 'BraA03t14633Z' => 'bra', 'BraA08t35112Z' => 'bra', 'BraA09t41330Z' => 'bra', 'BraA10t44570Z' => 'bra', 'C01p02670' => 'bna', 'C01p20260' => 'bna', 'C02p05890' => 'bna', 'C03p19530' => 'bna', 'C05p17470' => 'bna', 'C07p53900' => 'bna', 'C07p61630' => 'bna', 'C08p16800' => 'bna', 'C08p42810' => 'bna', 'C09p39480' => 'bna', 'C09p63980' => 'bna', 'CAN.G1001.7' => 'can', 'CAN.G1034.55' => 'can', 'CAN.G143.7' => 'can', 'CAN.G3340.1' => 'can', 'CAN.G358.19' => 'can', 'CAN.G373.2' => 'can', 'CAN.G674.16' => 'can', 'CAN.G674.17' => 'can', 'CAN.G674.18' => 'can', 'CAN.G732.2' => 'can', 'CAN.G732.3' => 'can', 'CAN.G993.39' => 'can', 'CANSAT01G2052' => 'cansat', 'CANSAT80G0070' => 'cansat', 'CANSAT80G0483' => 'cansat', 'CANSAT80G0625' => 'cansat', 'CARHR019690' => 'chi', 'CARHR080280' => 'chi', 'CARHR152750' => 'chi', 'CARHR152760' => 'chi', 'CARHR152770' => 'chi', 'CARHR200340' => 'chi', 'CARHR232370' => 'chi', 'CARHR244670' => 'chi', 'CARHR244680' => 'chi', 'CARHR257520' => 'chi', 'Carub.0001s1872' => 'cru', 'Carub.0006s1130' => 'cru', 'Carub.0007s0396' => 'cru', 'Carub.0007s0397' => 'cru', 'Carub.0007s1608' => 'cru', 'Carub.0008s1068' => 'cru', 'Carub.0008s1077' => 'cru', 'Ca_16158_v3' => 'car', 'Ca_17571_v3' => 'car', 'Ca_21936_v3' => 'car', 'Ca_22350_v3' => 'car', 'CBR_g22445' => 'cbr', 'CBR_g26290' => 'cbr', 'Cc04_g09610' => 'ccan', 'Cc04_g12280' => 'ccan', 'Cc07_g10230' => 'ccan', 'CDE02G0093' => 'cde', 'CDE02G0701' => 'cde', 'CDE04G1050' => 'cde', 'CDE05G1833' => 'cde', 'CDE05G3058' => 'cde', 'CDE05G3380' => 'cde', 'CDE06G0536' => 'cde', 'Cfa006923' => 'cfa', 'Cfa009402' => 'cfa', 'Cfa018751' => 'cfa', 'Cfa019164' => 'cfa', 'Cfa022935' => 'cfa', 'Ciclev10019081m.g' => 'ccl', 'Ciclev10025076m.g' => 'ccl', 'Ciclev10030712m.g' => 'ccl', 'Ciclev10033760m.g' => 'ccl', 'CiPaw.05G105600' => 'cil', 'CiPaw.08G136700' => 'cil', 'CiPaw.11G003900' => 'cil', 'CiPaw.11G023700' => 'cil', 'CiPaw.12G003700' => 'cil', 'ClCG06G017100' => 'cla', 'ClCG06G018110' => 'cla', 'ClCG07G008800' => 'cla', 'ClCG07G015330' => 'cla', 'COL.COLO4_13698' => 'col', 'COL.COLO4_16659' => 'col', 'COL.COLO4_21986' => 'col', 'COL.COLO4_24049' => 'col', 'COL.COLO4_29061' => 'col', 'COL.COLO4_29075' => 'col', 'COL.COLO4_30094' => 'col', 'Cpa.g.c33689' => 'cpa', 'Cpa.g.sc108.39' => 'cpa', 'Cpa.g.sc108.41' => 'cpa', 'Cpa.g.sc1163.1' => 'cpa', 'Cpa.g.sc4.155' => 'cpa', 'Cpa.g.sc6.194' => 'cpa', 'CsaV3_1G000340' => 'csa', 'CsaV3_1G001400' => 'csa', 'CsaV3_4G002220' => 'csa', 'CsaV3_4G005370' => 'csa', 'CSS0007487' => 'camsi', 'CSS0008066' => 'camsi', 'CSS0009120' => 'camsi', 'CSS0015512' => 'camsi', 'CSS0022409' => 'camsi', 'CSS0025358' => 'camsi', 'CSS0044547' => 'camsi', 'DCAR_013057' => 'dca', 'DCAR_015058' => 'dca', 'DCAR_016027' => 'dca', 'DCAR_017327' => 'dca', 'DCAR_020743' => 'dca', 'DCAR_026157' => 'dca', 'DCAR_032339' => 'dca', 'DCAR_032340' => 'dca', 'Dinv11200' => 'din', 'Dinv11201' => 'din', 'Dinv20631' => 'din', 'Dinv23182' => 'din', 'Dinv33466' => 'din', 'Dinv33583' => 'din', 'Dinv38565' => 'din', 'Duzib068G0200' => 'dzi', 'Duzib147G0132' => 'dzi', 'Duzib147G0635' => 'dzi', 'Duzib205G1670' => 'dzi', 'Duzib251G0606' => 'dzi', 'ECA232G3336' => 'eca', 'ECA232G3763' => 'eca', 'ECA232G4845' => 'eca', 'ECA234G1607' => 'eca', 'ECA246G0932' => 'eca', 'ECA247G0781' => 'eca', 'ECA247G1932' => 'eca', 'ECA247G2079' => 'eca', 'ECA247G3338' => 'eca', 'ECA247G4115' => 'eca', 'EL10Ac3g06552' => 'bvu', 'EL10Ac5g10721' => 'bvu', 'EL10Ac5g10722' => 'bvu', 'EL10Ac5g10723' => 'bvu', 'EL10Ac5g11361' => 'bvu', 'EL10Ac6g13553' => 'bvu', 'EL10As8g23872' => 'bvu', 'Eucgr.B00250' => 'egr', 'Eucgr.B00251' => 'egr', 'Eucgr.B03533' => 'egr', 'Eucgr.I02381' => 'egr', 'Eucgr.K02700' => 'egr', 'FAN02G0174' => 'fan', 'FAN02G3146' => 'fan', 'FAN04G1672' => 'fan', 'FAN04G2273' => 'fan', 'FAN05G2791' => 'fan', 'FAN05G4035' => 'fan', 'FAN07G0834' => 'fan', 'FAN08G1198' => 'fan', 'FAN09G4182' => 'fan', 'FAN12G0496' => 'fan', 'FAN13G1027' => 'fan', 'FAN13G2951' => 'fan', 'FAN14G0705' => 'fan', 'FAN14G0720' => 'fan', 'FAN17G0201' => 'fan', 'FAN17G2665' => 'fan', 'FAN18G1456' => 'fan', 'FAN18G1525' => 'fan', 'FAN18G3500' => 'fan', 'FAN28G2670' => 'fan', 'FvH4_1g12391' => 'fve', 'FvH4_4g23220' => 'fve', 'FvH4_5g08810' => 'fve', 'FvH4_5g28960' => 'fve', 'FvH4_6g42820' => 'fve', 'FvH4_6g51110' => 'fve', 'Glyma.02G051802' => 'gma', 'Glyma.04G185300' => 'gma', 'Glyma.05G202900' => 'gma', 'Glyma.08G010300' => 'gma', 'Glyma.16G131900' => 'gma', 'Glyma.17G087900' => 'gma', 'Gohir.A07G048600' => 'ghi', 'Gohir.A11G179000' => 'ghi', 'Gohir.A12G140900' => 'ghi', 'Gohir.A12G140950' => 'ghi', 'Gohir.A12G191700' => 'ghi', 'Gohir.A13G086300' => 'ghi', 'Gohir.D07G052900' => 'ghi', 'Gohir.D11G186600' => 'ghi', 'Gohir.D12G145575' => 'ghi', 'Gohir.D12G145650' => 'ghi', 'Gohir.D12G145725' => 'ghi', 'Gohir.D12G194050' => 'ghi', 'Gohir.D13G091800' => 'ghi', 'Gorai.001G055900' => 'gra', 'Gorai.007G198400' => 'gra', 'Gorai.008G157000' => 'gra', 'Gorai.008G157100' => 'gra', 'Gorai.008G208700' => 'gra', 'Gorai.010G138700' => 'gra', 'GSVIVG01000977001' => 'vvi', 'GSVIVG01007708001' => 'vvi', 'GSVIVG01008587001' => 'vvi', 'GSVIVG01018849001' => 'vvi', 'GSVIVG01032432001' => 'vvi', 'HanXRQChr02g0034131' => 'han', 'HanXRQChr02g0035981' => 'han', 'HanXRQChr02g0035991' => 'han', 'HanXRQChr05g0155611' => 'han', 'HanXRQChr05g0155621' => 'han', 'HanXRQChr08g0236501' => 'han', 'HanXRQChr09g0261321' => 'han', 'HanXRQChr09g0272081' => 'han', 'HanXRQChr10g0310741' => 'han', 'HanXRQChr11g0325591' => 'han', 'HanXRQChr12g0385691' => 'han', 'HanXRQChr13g0387801' => 'han', 'HanXRQChr15g0463011' => 'han', 'Haze_03826' => 'cav', 'Haze_03827' => 'cav', 'Haze_07183' => 'cav', 'Haze_07537' => 'cav', 'Haze_07539' => 'cav', 'Haze_12461' => 'cav', 'Haze_16115' => 'cav', 'Haze_16808' => 'cav', 'Haze_18531' => 'cav', 'Hma1.2p1_0046F.1_g026700' => 'hma', 'Hma1.2p1_0046F.1_g026710' => 'hma', 'Hma1.2p1_0168F.1_g074340' => 'hma', 'Hma1.2p1_0266F.1_g107030' => 'hma', 'Hma1.2p1_0266F.1_g107060' => 'hma', 'Hma1.2p1_0275F.1_g110510' => 'hma', 'Hma1.2p1_0592F.1_g185490' => 'hma', 'Hma1.2p1_0592F.1_g185500' => 'hma', 'Hma1.2p1_0592F.1_g185510' => 'hma', 'Hma1.2p1_0592F.1_g185520' => 'hma', 'Hma1.2p1_0592F.1_g185530' => 'hma', 'Hma1.2p1_0818F.1_g223450' => 'hma', 'HPP92_009708' => 'vpl', 'HPP92_009793' => 'vpl', 'HPP92_009796' => 'vpl', 'HPP92_009797' => 'vpl', 'HPP92_014940' => 'vpl', 'HPP92_014988' => 'vpl', 'Hund02463' => 'sun', 'Hund02760' => 'sun', 'Hund05071' => 'sun', 'Hund10108' => 'sun', 'Hund11204' => 'sun', 'Hund14016' => 'sun', 'Hund16464' => 'sun', 'Lalb_Chr09g0333391' => 'lal', 'Lalb_Chr11g0070461' => 'lal', 'Lalb_Chr12g0201671' => 'lal', 'Lalb_Chr13g0297161' => 'lal', 'Lj1g0002823' => 'lja', 'Lj3C1074T6' => 'lonja', 'Lj4A212T28' => 'lonja', 'Lj4g0005516' => 'lja', 'Lj4g0013705' => 'lja', 'Lj4g0027865' => 'lja', 'Lj5C92G16' => 'lonja', 'Lj5C92T12' => 'lonja', 'Lj7C596T3' => 'lonja', 'Lj9A446G59' => 'lonja', 'Lj9A482G21' => 'lonja', 'Lsat_1_v5_gn_1_28261' => 'lsa', 'Lsat_1_v5_gn_1_28281' => 'lsa', 'Lsat_1_v5_gn_1_32721' => 'lsa', 'Lsat_1_v5_gn_4_151760' => 'lsa', 'Lsat_1_v5_gn_4_2120' => 'lsa', 'Lsat_1_v5_gn_4_75761' => 'lsa', 'Lsat_1_v5_gn_5_10920' => 'lsa', 'Manes.02G099900' => 'mes', 'Manes.11G096200' => 'mes', 'Manes.12G007200' => 'mes', 'Manes.14G048300' => 'mes', 'Manes.17G114700' => 'mes', 'Mapoly0002s0070' => 'mpo', 'Mapoly0029s0099' => 'mpo', 'MBI07_g24742_MAGBIO' => 'mbi', 'MBI10_g27988_MAGBIO' => 'mbi', 'MBI11_g13057_MAGBIO' => 'mbi', 'MD02G1137200' => 'mdo', 'MD06G1137200' => 'mdo', 'MD07G1122300' => 'mdo', 'MD09G1078200' => 'mdo', 'MD13G1123700' => 'mdo', 'MD14G1151900' => 'mdo', 'MD17G1030900' => 'mdo', 'MD17G1068200' => 'mdo', 'MD17G1068600' => 'mdo', 'Medtr3g077540' => 'mtr', 'Medtr4g105530' => 'mtr', 'Medtr8g076580' => 'mtr', 'Medtr8g076590' => 'mtr', 'Medtr8g096410' => 'mtr', 'MELO3C016411.2' => 'cme', 'MELO3C017780.2' => 'cme', 'MELO3C022560.2' => 'cme', 'MELO3C026187.2' => 'cme', 'MELO3C026286.2' => 'cme', 'MELO3C032854.2' => 'cme', 'Migut.H02495' => 'egut', 'Migut.I00561' => 'egut', 'Migut.K01015' => 'egut', 'Migut.K01016' => 'egut', 'Migut.L00743' => 'egut', 'Migut.L00744' => 'egut', 'Migut.L00746' => 'egut', 'Migut.L00798' => 'egut', 'Migut.L00799' => 'egut', 'Migut.N02096' => 'egut', 'MSTRG.11259' => 'ama', 'MSTRG.23142' => 'ama', 'MSTRG.2499' => 'ama', 'Nitab4.5_0000003g0730' => 'nta', 'Nitab4.5_0000137g0020' => 'nta', 'Nitab4.5_0000721g0210' => 'nta', 'Nitab4.5_0000723g0050' => 'nta', 'Nitab4.5_0000913g0070' => 'nta', 'Nitab4.5_0001332g0040' => 'nta', 'Nitab4.5_0001771g0050' => 'nta', 'Nitab4.5_0001918g0050' => 'nta', 'Nitab4.5_0002686g0030' => 'nta', 'Nitab4.5_0003156g0020' => 'nta', 'Nitab4.5_0003383g0040' => 'nta', 'Nitab4.5_0003918g0010' => 'nta', 'Nitab4.5_0006760g0010' => 'nta', 'Nn1g05981' => 'nnu', 'Nn1g06288' => 'nnu', 'Nn3g16371' => 'nnu', 'Nn3g16786' => 'nnu', 'Nn4g22232' => 'nnu', 'Oeu005144.1' => 'oeu', 'Oeu005145.1' => 'oeu', 'Oeu011348.1' => 'oeu', 'Oeu016415.1' => 'oeu', 'Oeu023501.1' => 'oeu', 'Oeu044473.1' => 'oeu', 'Oeu048892.2' => 'oeu', 'Os01g0549200' => 'osa', 'Os02g0469300' => 'osa', 'Os04g0311100' => 'osa', 'Os06g0474900' => 'osa', 'Os10g0181700' => 'osa', 'Os11g0454800' => 'osa', 'Peaxi162Scf00037g00714' => 'pax', 'Peaxi162Scf00084g01217' => 'pax', 'Peaxi162Scf00257g00217' => 'pax', 'Peaxi162Scf00516g00215' => 'pax', 'Peaxi162Scf00689g00123' => 'pax', 'PGR044G2719' => 'pgr', 'PGR083G1360' => 'pgr', 'PGR102G2849' => 'pgr', 'PGR119G2534' => 'pgr', 'PGSC0003DMG400003538' => 'stu', 'PGSC0003DMG400028138' => 'stu', 'PGSC0003DMG400031732' => 'stu', 'PGSC0003DMG400038165' => 'stu', 'Phvul.002G284600' => 'pvu', 'Phvul.003G258200' => 'pvu', 'Phvul.009G176500' => 'pvu', 'Potri.003G167201' => 'ptr', 'Potri.005G118400' => 'ptr', 'Potri.012G089000' => 'ptr', 'Potri.012G102800' => 'ptr', 'Potri.015G079400' => 'ptr', 'Potri.015G100900' => 'ptr', 'Pp3c14_9810' => 'ppa', 'Pp3c15_10450' => 'ppa', 'Pp3c20_19150' => 'ppa', 'Pp3c23_12740' => 'ppa', 'Pp3c23_6310' => 'ppa', 'Pp3c24_3720' => 'ppa', 'Pp3c27_2580' => 'ppa', 'Pp3c9_8990' => 'ppa', 'PRCOL_00002854' => 'pco', 'Prupe.1G221200' => 'ppe', 'Prupe.3G289000' => 'ppe', 'Prupe.5G147000' => 'ppe', 'Prupe.6G157300' => 'ppe', 'Prupe.7G163400' => 'ppe', 'Psat0s2177g0040' => 'psa', 'Psat3g174760' => 'psa', 'Psat3g192160' => 'psa', 'Psat4g058520' => 'psa', 'Psat4g096840' => 'psa', 'Psat7g037320' => 'psa', 'PSO017G1274' => 'pso', 'PSO017G5166' => 'pso', 'PSO063G4558' => 'pso', 'PSO170G4458' => 'pso', 'PSO170G5005' => 'pso', 'PSO210G6156' => 'pso', 'PSO210G6635' => 'pso', 'PSO210G7397' => 'pso', 'PSO210G7700' => 'pso', 'PSO455G0035' => 'pso', 'PSO455G0180' => 'pso', 'PSO478G4515' => 'pso', 'PSO832G1305' => 'pso', 'PSO832G3489' => 'pso', 'QL02p075247' => 'qlo', 'QL03p051148' => 'qlo', 'QL05p010313' => 'qlo', 'QL06p034627' => 'qlo', 'QL10p001889' => 'qlo', 'QL10p010846' => 'qlo', 'RcHm_v2.0_Chr1g0350621' => 'rch', 'RcHm_v2.0_Chr1g0350641' => 'rch', 'RcHm_v2.0_Chr2g0092891' => 'rch', 'RcHm_v2.0_Chr2g0100251' => 'rch', 'RcHm_v2.0_Chr2g0158661' => 'rch', 'RcHm_v2.0_Chr2g0172741' => 'rch', 'RcHm_v2.0_Chr4g0429571' => 'rch', 'RcHm_v2.0_Chr5g0042471' => 'rch', 'RcHm_v2.0_Chr7g0189451' => 'rch', 'Rhsim08G0052000' => 'rsi', 'Rhsim08G0174400' => 'rsi', 'Rhsim08G0193200' => 'rsi', 'Rhsim10G0214800' => 'rsi', 'Rhsim10G0214900' => 'rsi', 'Rhsim10G0215000' => 'rsi', 'Rhsim12G0022900' => 'rsi', 'Rhsim12G0177500' => 'rsi', 'Rhsim12G0177700' => 'rsi', 'Sabra03G0122600' => 'sbr', 'Sabra05G0097400' => 'sbr', 'Sabra12G0064100' => 'sbr', 'Sabra15G0121300' => 'sbr', 'SalBow2G0642' => 'sbo', 'SalBow5G2667' => 'sbo', 'SalBow5G4873' => 'sbo', 'SalBow8G2395' => 'sbo', 'Sc03g0003290' => 'sci', 'Sc10g0010130' => 'sci', 'Sc22g0003650' => 'sci', 'Sed0001603' => 'sed', 'Sed0004259' => 'sed', 'Sed0006789' => 'sed', 'Sed0011838' => 'sed', 'Sed0012964' => 'sed', 'Sed0016383' => 'sed', 'Sed0019010' => 'sed', 'Sed0020188' => 'sed', 'SEGI_04702' => 'sgi', 'SEGI_17231' => 'sgi', 'SEGI_18877' => 'sgi', 'SEGI_25196' => 'sgi', 'SEGI_25515' => 'sgi', 'SEGI_28445' => 'sgi', 'SEGI_37452' => 'sgi', 'SGA_v2.0_scaffold188G40336' => 'sas', 'SGA_v2.0_scaffold228G43247' => 'sas', 'SGA_v2.0_scaffold280G46853' => 'sas', 'SGA_v2.0_scaffold34G13808' => 'sas', 'SGA_v2.0_scaffold40G15576' => 'sas', 'SGA_v2.0_scaffold611G53188' => 'sas', 'SGA_v2.0_scaffold78G25461' => 'sas', 'SGA_v2.0_scaffold90G27888' => 'sas', 'SHI08601' => 'shi', 'SHI08606' => 'shi', 'SHI17117' => 'shi', 'SHI17119' => 'shi', 'SMO118G0201' => 'smo', 'SMO169G0247' => 'smo', 'SMO176G0006' => 'smo', 'SMO176G0015' => 'smo', 'SMO202G0006' => 'smo', 'SMO240G0050' => 'smo', 'SMO286G0009' => 'smo', 'SMO338G0033' => 'smo', 'SMO356G0533' => 'smo', 'SMO364G0382' => 'smo', 'SMO367G0166' => 'smo', 'SMO367G1098' => 'smo', 'Solyc01g009920.3' => 'sly', 'Solyc01g099300.3' => 'sly', 'Solyc02g084700.3' => 'sly', 'Solyc03g097520.3' => 'sly', 'Solyc06g071580.3' => 'sly', 'Solyc10g081760.3' => 'sly', 'Sopen01g005480' => 'spe', 'Sopen01g042850' => 'spe', 'Sopen02g029370' => 'spe', 'Sopen03g028280' => 'spe', 'Sopen06g027870' => 'spe', 'Sopen10g032270' => 'spe', 'Sp5g18180' => 'spa', 'Sp6g12880' => 'spa', 'Sp6g30850' => 'spa', 'Sp7g22960' => 'spa', 'Sp7g34010' => 'spa', 'SpUn1326_0010' => 'spa', 'TAR371G0242' => 'tar', 'TAR622G0638' => 'tar', 'TAR628G1548' => 'tar', 'TAR629G1079' => 'tar', 'TAR629G3413' => 'tar', 'THA.LOC104804249' => 'tha', 'THA.LOC104808315' => 'tha', 'THA.LOC104809238' => 'tha', 'THA.LOC104825484' => 'tha', 'Thecc.01G025500' => 'tca', 'Thecc.03G015800' => 'tca', 'Thecc.03G018000' => 'tca', 'Thecc.03G134800' => 'tca', 'Thecc.04G014700' => 'tca', 'Thhalv10006991m.g' => 'esa', 'Thhalv10012707m.g' => 'esa', 'Thhalv10015739m.g' => 'esa', 'Thhalv10024553m.g' => 'esa', 'Thhalv10024673m.g' => 'esa', 'Thhalv10029187m.g' => 'esa', 'TPR.G12971' => 'tpr', 'TPR.G29396' => 'tpr', 'TPR.G33376' => 'tpr', 'TPR.G35508' => 'tpr', 'TPR.G35516' => 'tpr', 'TPR.G37317' => 'tpr', 'TPR.G37389' => 'tpr', 'TPR.G37523' => 'tpr', 'TPR.G559' => 'tpr', 'TWI14G0070' => 'twi', 'TWI14G0729' => 'twi', 'TWI18G0596' => 'twi', 'TWI39G0780' => 'twi', 'TWI39G0850' => 'twi', 'TWI73G1052' => 'twi', 'unitig_52.g17485' => 'ugi', 'unitig_61.g26355' => 'ugi', 'vmacro01040' => 'vma', 'vmacro16731' => 'vma', 'vmacro18270' => 'vma', 'vmacro19142' => 'vma', 'vmacro19407' => 'vma', 'vmacro19408' => 'vma', 'vmacro21899' => 'vma', 'vmacro21900' => 'vma', 'vmacro21901' => 'vma', 'VMungo0251G0490' => 'vmu', 'VMungo0251G1748' => 'vmu', 'VMungo1309G0421' => 'vmu', 'Zm00001eb086500' => 'zma', 'Zm00001eb150680' => 'zma', 'Zm00001eb162330' => 'zma', 'Zm00001eb203130' => 'zma', 'Zm00001eb369480' => 'zma', 'Zm00001eb382340' => 'zma', 'Zm00001eb416360' => 'zma' ), 'gf_id' => 'HOM05D000902', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000902' ), 'data_identifier' => 'HOM05D000902', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000902', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '663', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02470' => 'bna', 'A01p16260' => 'bna', 'A02p01680' => 'bna', 'A03p16600' => 'bna', 'A03p55660' => 'bna', 'A03p64160' => 'bna', 'A03p64170' => 'bna', 'A08p31900' => 'bna', 'A09p59530' => 'bna', 'A10p08230' => 'bna', 'A10p25090' => 'bna', 'Aa31LG3G7100' => 'aar', 'Aa31LG3G7110' => 'aar', 'Aa31LG6G13160' => 'aar', 'Aa31LG7G10770' => 'aar', 'Aa31LG7G3830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2723' => 'aag', 'Actinidia08045' => 'ach', 'Actinidia08888' => 'ach', 'Actinidia18333' => 'ach', 'Actinidia19334' => 'ach', 'Actinidia25552' => 'ach', 'Actinidia26089' => 'ach', 'Actinidia30615' => 'ach', 'Actinidia30616' => 'ach', 'Actinidia33083' => 'ach', 'Actinidia35762' => 'ach', 'Ah.02g110620' => 'amhyb', 'Ah.11g046390' => 'amhyb', 'AL1G31670' => 'aly', 'AL6G23730' => 'aly', 'AL7G14740' => 'aly', 'AL7G14750' => 'aly', 'AL7G14760' => 'aly', 'AL7G28220' => 'aly', 'AL8G24940' => 'aly', 'Aqoxy3G01665' => 'aox', 'Aqoxy3G02853' => 'aox', 'Aqoxy5G01513' => 'aox', 'Aqoxy5G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8SKA4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ75LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKDA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0LJZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7REX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZP4YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWX7I5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2QKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS0L9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPCD8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q161UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC7XCF' => 'arhy', 'AT1G19100' => 'ath', 'AT4G24970' => 'ath', 'AT4G36270' => 'ath', 'AT4G36280' => 'ath', 'AT4G36290' => 'ath', 'AT5G13130' => 'ath', 'AT5G50780' => 'ath', 'ATR0582G266' => 'atr', 'ATR0661G195' => 'atr', 'ATR1152G031' => 'atr', 'Atru.chr11.2382' => 'acertr', 'Atru.chr12.2337' => 'acertr', 'Atru.chr3.744' => 'acertr', 'Atru.chr6.1870' => 'acertr', 'Atru.chr9.2515' => 'acertr', 'AUR62004120' => 'cqu', 'AUR62005667' => 'cqu', 'AUR62007634' => 'cqu', 'AUR62008186' => 'cqu', 'AUR62008187' => 'cqu', 'AUR62008188' => 'cqu', 'AUR62027954' => 'cqu', 'AUR62028766' => 'cqu', 'AUR62028767' => 'cqu', 'AUR62028768' => 'cqu', 'AUR62028886' => 'cqu', 'AUR62029563' => 'cqu', 'AUR62038832' => 'cqu', 'BcaB01g04149' => 'bca', 'BcaB03g12940' => 'bca', 'BcaB03g13090' => 'bca', 'BcaB03g14466' => 'bca', 'BcaB05g24035' => 'bca', 'BcaC01g06050' => 'bca', 'BcaC04g19148' => 'bca', 'BcaC04g20761' => 'bca', 'BcaC06g32845' => 'bca', 'BcaC07g41274' => 'bca', 'BcaC09g50827' => 'bca', 'BcaNung00741' => 'bca', 'BcaNung00742' => 'bca', 'BcaNung01859' => 'bca', 'BcaNung03985' => 'bca', 'BcaNung03989' => 'bca', 'BcaNung05661' => 'bca', 'BolC1t00257H' => 'bol', 'BolC1t01956H' => 'bol', 'BolC2t06534H' => 'bol', 'BolC3t14334H' => 'bol', 'BolC5t30451H' => 'bol', 'BolC7t45880H' => 'bol', 'BolC7t46586H' => 'bol', 'BolC8t49301H' => 'bol', 'BolC8t51837H' => 'bol', 'BolC9t56822H' => 'bol', 'BolC9t59235H' => 'bol', 'BraA01t00234Z' => 'bra', 'BraA01t01563Z' => 'bra', 'BraA02t05147Z' => 'bra', 'BraA03t10947Z' => 'bra', 'BraA03t14633Z' => 'bra', 'BraA08t35112Z' => 'bra', 'BraA09t41330Z' => 'bra', 'BraA10t44570Z' => 'bra', 'C01p02670' => 'bna', 'C01p20260' => 'bna', 'C02p05890' => 'bna', 'C03p19530' => 'bna', 'C05p17470' => 'bna', 'C07p53900' => 'bna', 'C07p61630' => 'bna', 'C08p16800' => 'bna', 'C08p42810' => 'bna', 'C09p39480' => 'bna', 'C09p63980' => 'bna', 'CAN.G1001.7' => 'can', 'CAN.G1034.55' => 'can', 'CAN.G143.7' => 'can', 'CAN.G3340.1' => 'can', 'CAN.G358.19' => 'can', 'CAN.G373.2' => 'can', 'CAN.G674.16' => 'can', 'CAN.G674.17' => 'can', 'CAN.G674.18' => 'can', 'CAN.G732.2' => 'can', 'CAN.G732.3' => 'can', 'CAN.G993.39' => 'can', 'CANSAT01G2052' => 'cansat', 'CANSAT80G0070' => 'cansat', 'CANSAT80G0483' => 'cansat', 'CANSAT80G0625' => 'cansat', 'CARHR019690' => 'chi', 'CARHR080280' => 'chi', 'CARHR152750' => 'chi', 'CARHR152760' => 'chi', 'CARHR152770' => 'chi', 'CARHR200340' => 'chi', 'CARHR232370' => 'chi', 'CARHR244670' => 'chi', 'CARHR244680' => 'chi', 'CARHR257520' => 'chi', 'Carub.0001s1872' => 'cru', 'Carub.0006s1130' => 'cru', 'Carub.0007s0396' => 'cru', 'Carub.0007s0397' => 'cru', 'Carub.0007s1608' => 'cru', 'Carub.0008s1068' => 'cru', 'Carub.0008s1077' => 'cru', 'Ca_16158_v3' => 'car', 'Ca_17571_v3' => 'car', 'Ca_21936_v3' => 'car', 'Ca_22350_v3' => 'car', 'CBR_g22445' => 'cbr', 'CBR_g26290' => 'cbr', 'Cc04_g09610' => 'ccan', 'Cc04_g12280' => 'ccan', 'Cc07_g10230' => 'ccan', 'CDE02G0093' => 'cde', 'CDE02G0701' => 'cde', 'CDE04G1050' => 'cde', 'CDE05G1833' => 'cde', 'CDE05G3058' => 'cde', 'CDE05G3380' => 'cde', 'CDE06G0536' => 'cde', 'Cfa006923' => 'cfa', 'Cfa009402' => 'cfa', 'Cfa018751' => 'cfa', 'Cfa019164' => 'cfa', 'Cfa022935' => 'cfa', 'Ciclev10019081m.g' => 'ccl', 'Ciclev10025076m.g' => 'ccl', 'Ciclev10030712m.g' => 'ccl', 'Ciclev10033760m.g' => 'ccl', 'CiPaw.05G105600' => 'cil', 'CiPaw.08G136700' => 'cil', 'CiPaw.11G003900' => 'cil', 'CiPaw.11G023700' => 'cil', 'CiPaw.12G003700' => 'cil', 'ClCG06G017100' => 'cla', 'ClCG06G018110' => 'cla', 'ClCG07G008800' => 'cla', 'ClCG07G015330' => 'cla', 'COL.COLO4_13698' => 'col', 'COL.COLO4_16659' => 'col', 'COL.COLO4_21986' => 'col', 'COL.COLO4_24049' => 'col', 'COL.COLO4_29061' => 'col', 'COL.COLO4_29075' => 'col', 'COL.COLO4_30094' => 'col', 'Cpa.g.c33689' => 'cpa', 'Cpa.g.sc108.39' => 'cpa', 'Cpa.g.sc108.41' => 'cpa', 'Cpa.g.sc1163.1' => 'cpa', 'Cpa.g.sc4.155' => 'cpa', 'Cpa.g.sc6.194' => 'cpa', 'CsaV3_1G000340' => 'csa', 'CsaV3_1G001400' => 'csa', 'CsaV3_4G002220' => 'csa', 'CsaV3_4G005370' => 'csa', 'CSS0007487' => 'camsi', 'CSS0008066' => 'camsi', 'CSS0009120' => 'camsi', 'CSS0015512' => 'camsi', 'CSS0022409' => 'camsi', 'CSS0025358' => 'camsi', 'CSS0044547' => 'camsi', 'DCAR_013057' => 'dca', 'DCAR_015058' => 'dca', 'DCAR_016027' => 'dca', 'DCAR_017327' => 'dca', 'DCAR_020743' => 'dca', 'DCAR_026157' => 'dca', 'DCAR_032339' => 'dca', 'DCAR_032340' => 'dca', 'Dinv11200' => 'din', 'Dinv11201' => 'din', 'Dinv20631' => 'din', 'Dinv23182' => 'din', 'Dinv33466' => 'din', 'Dinv33583' => 'din', 'Dinv38565' => 'din', 'Duzib068G0200' => 'dzi', 'Duzib147G0132' => 'dzi', 'Duzib147G0635' => 'dzi', 'Duzib205G1670' => 'dzi', 'Duzib251G0606' => 'dzi', 'ECA232G3336' => 'eca', 'ECA232G3763' => 'eca', 'ECA232G4845' => 'eca', 'ECA234G1607' => 'eca', 'ECA246G0932' => 'eca', 'ECA247G0781' => 'eca', 'ECA247G1932' => 'eca', 'ECA247G2079' => 'eca', 'ECA247G3338' => 'eca', 'ECA247G4115' => 'eca', 'EL10Ac3g06552' => 'bvu', 'EL10Ac5g10721' => 'bvu', 'EL10Ac5g10722' => 'bvu', 'EL10Ac5g10723' => 'bvu', 'EL10Ac5g11361' => 'bvu', 'EL10Ac6g13553' => 'bvu', 'EL10As8g23872' => 'bvu', 'Eucgr.B00250' => 'egr', 'Eucgr.B00251' => 'egr', 'Eucgr.B03533' => 'egr', 'Eucgr.I02381' => 'egr', 'Eucgr.K02700' => 'egr', 'FAN02G0174' => 'fan', 'FAN02G3146' => 'fan', 'FAN04G1672' => 'fan', 'FAN04G2273' => 'fan', 'FAN05G2791' => 'fan', 'FAN05G4035' => 'fan', 'FAN07G0834' => 'fan', 'FAN08G1198' => 'fan', 'FAN09G4182' => 'fan', 'FAN12G0496' => 'fan', 'FAN13G1027' => 'fan', 'FAN13G2951' => 'fan', 'FAN14G0705' => 'fan', 'FAN14G0720' => 'fan', 'FAN17G0201' => 'fan', 'FAN17G2665' => 'fan', 'FAN18G1456' => 'fan', 'FAN18G1525' => 'fan', 'FAN18G3500' => 'fan', 'FAN28G2670' => 'fan', 'FvH4_1g12391' => 'fve', 'FvH4_4g23220' => 'fve', 'FvH4_5g08810' => 'fve', 'FvH4_5g28960' => 'fve', 'FvH4_6g42820' => 'fve', 'FvH4_6g51110' => 'fve', 'Glyma.02G051802' => 'gma', 'Glyma.04G185300' => 'gma', 'Glyma.05G202900' => 'gma', 'Glyma.08G010300' => 'gma', 'Glyma.16G131900' => 'gma', 'Glyma.17G087900' => 'gma', 'Gohir.A07G048600' => 'ghi', 'Gohir.A11G179000' => 'ghi', 'Gohir.A12G140900' => 'ghi', 'Gohir.A12G140950' => 'ghi', 'Gohir.A12G191700' => 'ghi', 'Gohir.A13G086300' => 'ghi', 'Gohir.D07G052900' => 'ghi', 'Gohir.D11G186600' => 'ghi', 'Gohir.D12G145575' => 'ghi', 'Gohir.D12G145650' => 'ghi', 'Gohir.D12G145725' => 'ghi', 'Gohir.D12G194050' => 'ghi', 'Gohir.D13G091800' => 'ghi', 'Gorai.001G055900' => 'gra', 'Gorai.007G198400' => 'gra', 'Gorai.008G157000' => 'gra', 'Gorai.008G157100' => 'gra', 'Gorai.008G208700' => 'gra', 'Gorai.010G138700' => 'gra', 'GSVIVG01000977001' => 'vvi', 'GSVIVG01007708001' => 'vvi', 'GSVIVG01008587001' => 'vvi', 'GSVIVG01018849001' => 'vvi', 'GSVIVG01032432001' => 'vvi', 'HanXRQChr02g0034131' => 'han', 'HanXRQChr02g0035981' => 'han', 'HanXRQChr02g0035991' => 'han', 'HanXRQChr05g0155611' => 'han', 'HanXRQChr05g0155621' => 'han', 'HanXRQChr08g0236501' => 'han', 'HanXRQChr09g0261321' => 'han', 'HanXRQChr09g0272081' => 'han', 'HanXRQChr10g0310741' => 'han', 'HanXRQChr11g0325591' => 'han', 'HanXRQChr12g0385691' => 'han', 'HanXRQChr13g0387801' => 'han', 'HanXRQChr15g0463011' => 'han', 'Haze_03826' => 'cav', 'Haze_03827' => 'cav', 'Haze_07183' => 'cav', 'Haze_07537' => 'cav', 'Haze_07539' => 'cav', 'Haze_12461' => 'cav', 'Haze_16115' => 'cav', 'Haze_16808' => 'cav', 'Haze_18531' => 'cav', 'Hma1.2p1_0046F.1_g026700' => 'hma', 'Hma1.2p1_0046F.1_g026710' => 'hma', 'Hma1.2p1_0168F.1_g074340' => 'hma', 'Hma1.2p1_0266F.1_g107030' => 'hma', 'Hma1.2p1_0266F.1_g107060' => 'hma', 'Hma1.2p1_0275F.1_g110510' => 'hma', 'Hma1.2p1_0592F.1_g185490' => 'hma', 'Hma1.2p1_0592F.1_g185500' => 'hma', 'Hma1.2p1_0592F.1_g185510' => 'hma', 'Hma1.2p1_0592F.1_g185520' => 'hma', 'Hma1.2p1_0592F.1_g185530' => 'hma', 'Hma1.2p1_0818F.1_g223450' => 'hma', 'HPP92_009708' => 'vpl', 'HPP92_009793' => 'vpl', 'HPP92_009796' => 'vpl', 'HPP92_009797' => 'vpl', 'HPP92_014940' => 'vpl', 'HPP92_014988' => 'vpl', 'Hund02463' => 'sun', 'Hund02760' => 'sun', 'Hund05071' => 'sun', 'Hund10108' => 'sun', 'Hund11204' => 'sun', 'Hund14016' => 'sun', 'Hund16464' => 'sun', 'Lalb_Chr09g0333391' => 'lal', 'Lalb_Chr11g0070461' => 'lal', 'Lalb_Chr12g0201671' => 'lal', 'Lalb_Chr13g0297161' => 'lal', 'Lj1g0002823' => 'lja', 'Lj3C1074T6' => 'lonja', 'Lj4A212T28' => 'lonja', 'Lj4g0005516' => 'lja', 'Lj4g0013705' => 'lja', 'Lj4g0027865' => 'lja', 'Lj5C92G16' => 'lonja', 'Lj5C92T12' => 'lonja', 'Lj7C596T3' => 'lonja', 'Lj9A446G59' => 'lonja', 'Lj9A482G21' => 'lonja', 'Lsat_1_v5_gn_1_28261' => 'lsa', 'Lsat_1_v5_gn_1_28281' => 'lsa', 'Lsat_1_v5_gn_1_32721' => 'lsa', 'Lsat_1_v5_gn_4_151760' => 'lsa', 'Lsat_1_v5_gn_4_2120' => 'lsa', 'Lsat_1_v5_gn_4_75761' => 'lsa', 'Lsat_1_v5_gn_5_10920' => 'lsa', 'Manes.02G099900' => 'mes', 'Manes.11G096200' => 'mes', 'Manes.12G007200' => 'mes', 'Manes.14G048300' => 'mes', 'Manes.17G114700' => 'mes', 'Mapoly0002s0070' => 'mpo', 'Mapoly0029s0099' => 'mpo', 'MBI07_g24742_MAGBIO' => 'mbi', 'MBI10_g27988_MAGBIO' => 'mbi', 'MBI11_g13057_MAGBIO' => 'mbi', 'MD02G1137200' => 'mdo', 'MD06G1137200' => 'mdo', 'MD07G1122300' => 'mdo', 'MD09G1078200' => 'mdo', 'MD13G1123700' => 'mdo', 'MD14G1151900' => 'mdo', 'MD17G1030900' => 'mdo', 'MD17G1068200' => 'mdo', 'MD17G1068600' => 'mdo', 'Medtr3g077540' => 'mtr', 'Medtr4g105530' => 'mtr', 'Medtr8g076580' => 'mtr', 'Medtr8g076590' => 'mtr', 'Medtr8g096410' => 'mtr', 'MELO3C016411.2' => 'cme', 'MELO3C017780.2' => 'cme', 'MELO3C022560.2' => 'cme', 'MELO3C026187.2' => 'cme', 'MELO3C026286.2' => 'cme', 'MELO3C032854.2' => 'cme', 'Migut.H02495' => 'egut', 'Migut.I00561' => 'egut', 'Migut.K01015' => 'egut', 'Migut.K01016' => 'egut', 'Migut.L00743' => 'egut', 'Migut.L00744' => 'egut', 'Migut.L00746' => 'egut', 'Migut.L00798' => 'egut', 'Migut.L00799' => 'egut', 'Migut.N02096' => 'egut', 'MSTRG.11259' => 'ama', 'MSTRG.23142' => 'ama', 'MSTRG.2499' => 'ama', 'Nitab4.5_0000003g0730' => 'nta', 'Nitab4.5_0000137g0020' => 'nta', 'Nitab4.5_0000721g0210' => 'nta', 'Nitab4.5_0000723g0050' => 'nta', 'Nitab4.5_0000913g0070' => 'nta', 'Nitab4.5_0001332g0040' => 'nta', 'Nitab4.5_0001771g0050' => 'nta', 'Nitab4.5_0001918g0050' => 'nta', 'Nitab4.5_0002686g0030' => 'nta', 'Nitab4.5_0003156g0020' => 'nta', 'Nitab4.5_0003383g0040' => 'nta', 'Nitab4.5_0003918g0010' => 'nta', 'Nitab4.5_0006760g0010' => 'nta', 'Nn1g05981' => 'nnu', 'Nn1g06288' => 'nnu', 'Nn3g16371' => 'nnu', 'Nn3g16786' => 'nnu', 'Nn4g22232' => 'nnu', 'Oeu005144.1' => 'oeu', 'Oeu005145.1' => 'oeu', 'Oeu011348.1' => 'oeu', 'Oeu016415.1' => 'oeu', 'Oeu023501.1' => 'oeu', 'Oeu044473.1' => 'oeu', 'Oeu048892.2' => 'oeu', 'Os01g0549200' => 'osa', 'Os02g0469300' => 'osa', 'Os04g0311100' => 'osa', 'Os06g0474900' => 'osa', 'Os10g0181700' => 'osa', 'Os11g0454800' => 'osa', 'Peaxi162Scf00037g00714' => 'pax', 'Peaxi162Scf00084g01217' => 'pax', 'Peaxi162Scf00257g00217' => 'pax', 'Peaxi162Scf00516g00215' => 'pax', 'Peaxi162Scf00689g00123' => 'pax', 'PGR044G2719' => 'pgr', 'PGR083G1360' => 'pgr', 'PGR102G2849' => 'pgr', 'PGR119G2534' => 'pgr', 'PGSC0003DMG400003538' => 'stu', 'PGSC0003DMG400028138' => 'stu', 'PGSC0003DMG400031732' => 'stu', 'PGSC0003DMG400038165' => 'stu', 'Phvul.002G284600' => 'pvu', 'Phvul.003G258200' => 'pvu', 'Phvul.009G176500' => 'pvu', 'Potri.003G167201' => 'ptr', 'Potri.005G118400' => 'ptr', 'Potri.012G089000' => 'ptr', 'Potri.012G102800' => 'ptr', 'Potri.015G079400' => 'ptr', 'Potri.015G100900' => 'ptr', 'Pp3c14_9810' => 'ppa', 'Pp3c15_10450' => 'ppa', 'Pp3c20_19150' => 'ppa', 'Pp3c23_12740' => 'ppa', 'Pp3c23_6310' => 'ppa', 'Pp3c24_3720' => 'ppa', 'Pp3c27_2580' => 'ppa', 'Pp3c9_8990' => 'ppa', 'PRCOL_00002854' => 'pco', 'Prupe.1G221200' => 'ppe', 'Prupe.3G289000' => 'ppe', 'Prupe.5G147000' => 'ppe', 'Prupe.6G157300' => 'ppe', 'Prupe.7G163400' => 'ppe', 'Psat0s2177g0040' => 'psa', 'Psat3g174760' => 'psa', 'Psat3g192160' => 'psa', 'Psat4g058520' => 'psa', 'Psat4g096840' => 'psa', 'Psat7g037320' => 'psa', 'PSO017G1274' => 'pso', 'PSO017G5166' => 'pso', 'PSO063G4558' => 'pso', 'PSO170G4458' => 'pso', 'PSO170G5005' => 'pso', 'PSO210G6156' => 'pso', 'PSO210G6635' => 'pso', 'PSO210G7397' => 'pso', 'PSO210G7700' => 'pso', 'PSO455G0035' => 'pso', 'PSO455G0180' => 'pso', 'PSO478G4515' => 'pso', 'PSO832G1305' => 'pso', 'PSO832G3489' => 'pso', 'QL02p075247' => 'qlo', 'QL03p051148' => 'qlo', 'QL05p010313' => 'qlo', 'QL06p034627' => 'qlo', 'QL10p001889' => 'qlo', 'QL10p010846' => 'qlo', 'RcHm_v2.0_Chr1g0350621' => 'rch', 'RcHm_v2.0_Chr1g0350641' => 'rch', 'RcHm_v2.0_Chr2g0092891' => 'rch', 'RcHm_v2.0_Chr2g0100251' => 'rch', 'RcHm_v2.0_Chr2g0158661' => 'rch', 'RcHm_v2.0_Chr2g0172741' => 'rch', 'RcHm_v2.0_Chr4g0429571' => 'rch', 'RcHm_v2.0_Chr5g0042471' => 'rch', 'RcHm_v2.0_Chr7g0189451' => 'rch', 'Rhsim08G0052000' => 'rsi', 'Rhsim08G0174400' => 'rsi', 'Rhsim08G0193200' => 'rsi', 'Rhsim10G0214800' => 'rsi', 'Rhsim10G0214900' => 'rsi', 'Rhsim10G0215000' => 'rsi', 'Rhsim12G0022900' => 'rsi', 'Rhsim12G0177500' => 'rsi', 'Rhsim12G0177700' => 'rsi', 'Sabra03G0122600' => 'sbr', 'Sabra05G0097400' => 'sbr', 'Sabra12G0064100' => 'sbr', 'Sabra15G0121300' => 'sbr', 'SalBow2G0642' => 'sbo', 'SalBow5G2667' => 'sbo', 'SalBow5G4873' => 'sbo', 'SalBow8G2395' => 'sbo', 'Sc03g0003290' => 'sci', 'Sc10g0010130' => 'sci', 'Sc22g0003650' => 'sci', 'Sed0001603' => 'sed', 'Sed0004259' => 'sed', 'Sed0006789' => 'sed', 'Sed0011838' => 'sed', 'Sed0012964' => 'sed', 'Sed0016383' => 'sed', 'Sed0019010' => 'sed', 'Sed0020188' => 'sed', 'SEGI_04702' => 'sgi', 'SEGI_17231' => 'sgi', 'SEGI_18877' => 'sgi', 'SEGI_25196' => 'sgi', 'SEGI_25515' => 'sgi', 'SEGI_28445' => 'sgi', 'SEGI_37452' => 'sgi', 'SGA_v2.0_scaffold188G40336' => 'sas', 'SGA_v2.0_scaffold228G43247' => 'sas', 'SGA_v2.0_scaffold280G46853' => 'sas', 'SGA_v2.0_scaffold34G13808' => 'sas', 'SGA_v2.0_scaffold40G15576' => 'sas', 'SGA_v2.0_scaffold611G53188' => 'sas', 'SGA_v2.0_scaffold78G25461' => 'sas', 'SGA_v2.0_scaffold90G27888' => 'sas', 'SHI08601' => 'shi', 'SHI08606' => 'shi', 'SHI17117' => 'shi', 'SHI17119' => 'shi', 'SMO118G0201' => 'smo', 'SMO169G0247' => 'smo', 'SMO176G0006' => 'smo', 'SMO176G0015' => 'smo', 'SMO202G0006' => 'smo', 'SMO240G0050' => 'smo', 'SMO286G0009' => 'smo', 'SMO338G0033' => 'smo', 'SMO356G0533' => 'smo', 'SMO364G0382' => 'smo', 'SMO367G0166' => 'smo', 'SMO367G1098' => 'smo', 'Solyc01g009920.3' => 'sly', 'Solyc01g099300.3' => 'sly', 'Solyc02g084700.3' => 'sly', 'Solyc03g097520.3' => 'sly', 'Solyc06g071580.3' => 'sly', 'Solyc10g081760.3' => 'sly', 'Sopen01g005480' => 'spe', 'Sopen01g042850' => 'spe', 'Sopen02g029370' => 'spe', 'Sopen03g028280' => 'spe', 'Sopen06g027870' => 'spe', 'Sopen10g032270' => 'spe', 'Sp5g18180' => 'spa', 'Sp6g12880' => 'spa', 'Sp6g30850' => 'spa', 'Sp7g22960' => 'spa', 'Sp7g34010' => 'spa', 'SpUn1326_0010' => 'spa', 'TAR371G0242' => 'tar', 'TAR622G0638' => 'tar', 'TAR628G1548' => 'tar', 'TAR629G1079' => 'tar', 'TAR629G3413' => 'tar', 'THA.LOC104804249' => 'tha', 'THA.LOC104808315' => 'tha', 'THA.LOC104809238' => 'tha', 'THA.LOC104825484' => 'tha', 'Thecc.01G025500' => 'tca', 'Thecc.03G015800' => 'tca', 'Thecc.03G018000' => 'tca', 'Thecc.03G134800' => 'tca', 'Thecc.04G014700' => 'tca', 'Thhalv10006991m.g' => 'esa', 'Thhalv10012707m.g' => 'esa', 'Thhalv10015739m.g' => 'esa', 'Thhalv10024553m.g' => 'esa', 'Thhalv10024673m.g' => 'esa', 'Thhalv10029187m.g' => 'esa', 'TPR.G12971' => 'tpr', 'TPR.G29396' => 'tpr', 'TPR.G33376' => 'tpr', 'TPR.G35508' => 'tpr', 'TPR.G35516' => 'tpr', 'TPR.G37317' => 'tpr', 'TPR.G37389' => 'tpr', 'TPR.G37523' => 'tpr', 'TPR.G559' => 'tpr', 'TWI14G0070' => 'twi', 'TWI14G0729' => 'twi', 'TWI18G0596' => 'twi', 'TWI39G0780' => 'twi', 'TWI39G0850' => 'twi', 'TWI73G1052' => 'twi', 'unitig_52.g17485' => 'ugi', 'unitig_61.g26355' => 'ugi', 'vmacro01040' => 'vma', 'vmacro16731' => 'vma', 'vmacro18270' => 'vma', 'vmacro19142' => 'vma', 'vmacro19407' => 'vma', 'vmacro19408' => 'vma', 'vmacro21899' => 'vma', 'vmacro21900' => 'vma', 'vmacro21901' => 'vma', 'VMungo0251G0490' => 'vmu', 'VMungo0251G1748' => 'vmu', 'VMungo1309G0421' => 'vmu', 'Zm00001eb086500' => 'zma', 'Zm00001eb150680' => 'zma', 'Zm00001eb162330' => 'zma', 'Zm00001eb203130' => 'zma', 'Zm00001eb369480' => 'zma', 'Zm00001eb382340' => 'zma', 'Zm00001eb416360' => 'zma' ) $gf_id = 'HOM05D000902' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000902' ) $data_identifier = 'HOM05D000902' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 13, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 10, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 6, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 9, 'hma' => (int) 12, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 4, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 6, 'ppa' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 6, 'rch' => (int) 9, 'rsi' => (int) 9, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 12, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 3, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416360' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000902', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '663', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02470' => 'bna', 'A01p16260' => 'bna', 'A02p01680' => 'bna', 'A03p16600' => 'bna', 'A03p55660' => 'bna', 'A03p64160' => 'bna', 'A03p64170' => 'bna', 'A08p31900' => 'bna', 'A09p59530' => 'bna', 'A10p08230' => 'bna', 'A10p25090' => 'bna', 'Aa31LG3G7100' => 'aar', 'Aa31LG3G7110' => 'aar', 'Aa31LG6G13160' => 'aar', 'Aa31LG7G10770' => 'aar', 'Aa31LG7G3830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2723' => 'aag', 'Actinidia08045' => 'ach', 'Actinidia08888' => 'ach', 'Actinidia18333' => 'ach', 'Actinidia19334' => 'ach', 'Actinidia25552' => 'ach', 'Actinidia26089' => 'ach', 'Actinidia30615' => 'ach', 'Actinidia30616' => 'ach', 'Actinidia33083' => 'ach', 'Actinidia35762' => 'ach', 'Ah.02g110620' => 'amhyb', 'Ah.11g046390' => 'amhyb', 'AL1G31670' => 'aly', 'AL6G23730' => 'aly', 'AL7G14740' => 'aly', 'AL7G14750' => 'aly', 'AL7G14760' => 'aly', 'AL7G28220' => 'aly', 'AL8G24940' => 'aly', 'Aqoxy3G01665' => 'aox', 'Aqoxy3G02853' => 'aox', 'Aqoxy5G01513' => 'aox', 'Aqoxy5G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8SKA4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ75LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKDA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0LJZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7REX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZP4YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWX7I5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2QKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS0L9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPCD8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q161UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC7XCF' => 'arhy', 'AT1G19100' => 'ath', 'AT4G24970' => 'ath', 'AT4G36270' => 'ath', 'AT4G36280' => 'ath', 'AT4G36290' => 'ath', 'AT5G13130' => 'ath', 'AT5G50780' => 'ath', 'ATR0582G266' => 'atr', 'ATR0661G195' => 'atr', 'ATR1152G031' => 'atr', 'Atru.chr11.2382' => 'acertr', 'Atru.chr12.2337' => 'acertr', 'Atru.chr3.744' => 'acertr', 'Atru.chr6.1870' => 'acertr', 'Atru.chr9.2515' => 'acertr', 'AUR62004120' => 'cqu', 'AUR62005667' => 'cqu', 'AUR62007634' => 'cqu', 'AUR62008186' => 'cqu', 'AUR62008187' => 'cqu', 'AUR62008188' => 'cqu', 'AUR62027954' => 'cqu', 'AUR62028766' => 'cqu', 'AUR62028767' => 'cqu', 'AUR62028768' => 'cqu', 'AUR62028886' => 'cqu', 'AUR62029563' => 'cqu', 'AUR62038832' => 'cqu', 'BcaB01g04149' => 'bca', 'BcaB03g12940' => 'bca', 'BcaB03g13090' => 'bca', 'BcaB03g14466' => 'bca', 'BcaB05g24035' => 'bca', 'BcaC01g06050' => 'bca', 'BcaC04g19148' => 'bca', 'BcaC04g20761' => 'bca', 'BcaC06g32845' => 'bca', 'BcaC07g41274' => 'bca', 'BcaC09g50827' => 'bca', 'BcaNung00741' => 'bca', 'BcaNung00742' => 'bca', 'BcaNung01859' => 'bca', 'BcaNung03985' => 'bca', 'BcaNung03989' => 'bca', 'BcaNung05661' => 'bca', 'BolC1t00257H' => 'bol', 'BolC1t01956H' => 'bol', 'BolC2t06534H' => 'bol', 'BolC3t14334H' => 'bol', 'BolC5t30451H' => 'bol', 'BolC7t45880H' => 'bol', 'BolC7t46586H' => 'bol', 'BolC8t49301H' => 'bol', 'BolC8t51837H' => 'bol', 'BolC9t56822H' => 'bol', 'BolC9t59235H' => 'bol', 'BraA01t00234Z' => 'bra', 'BraA01t01563Z' => 'bra', 'BraA02t05147Z' => 'bra', 'BraA03t10947Z' => 'bra', 'BraA03t14633Z' => 'bra', 'BraA08t35112Z' => 'bra', 'BraA09t41330Z' => 'bra', 'BraA10t44570Z' => 'bra', 'C01p02670' => 'bna', 'C01p20260' => 'bna', 'C02p05890' => 'bna', 'C03p19530' => 'bna', 'C05p17470' => 'bna', 'C07p53900' => 'bna', 'C07p61630' => 'bna', 'C08p16800' => 'bna', 'C08p42810' => 'bna', 'C09p39480' => 'bna', 'C09p63980' => 'bna', 'CAN.G1001.7' => 'can', 'CAN.G1034.55' => 'can', 'CAN.G143.7' => 'can', 'CAN.G3340.1' => 'can', 'CAN.G358.19' => 'can', 'CAN.G373.2' => 'can', 'CAN.G674.16' => 'can', 'CAN.G674.17' => 'can', 'CAN.G674.18' => 'can', 'CAN.G732.2' => 'can', 'CAN.G732.3' => 'can', 'CAN.G993.39' => 'can', 'CANSAT01G2052' => 'cansat', 'CANSAT80G0070' => 'cansat', 'CANSAT80G0483' => 'cansat', 'CANSAT80G0625' => 'cansat', 'CARHR019690' => 'chi', 'CARHR080280' => 'chi', 'CARHR152750' => 'chi', 'CARHR152760' => 'chi', 'CARHR152770' => 'chi', 'CARHR200340' => 'chi', 'CARHR232370' => 'chi', 'CARHR244670' => 'chi', 'CARHR244680' => 'chi', 'CARHR257520' => 'chi', 'Carub.0001s1872' => 'cru', 'Carub.0006s1130' => 'cru', 'Carub.0007s0396' => 'cru', 'Carub.0007s0397' => 'cru', 'Carub.0007s1608' => 'cru', 'Carub.0008s1068' => 'cru', 'Carub.0008s1077' => 'cru', 'Ca_16158_v3' => 'car', 'Ca_17571_v3' => 'car', 'Ca_21936_v3' => 'car', 'Ca_22350_v3' => 'car', 'CBR_g22445' => 'cbr', 'CBR_g26290' => 'cbr', 'Cc04_g09610' => 'ccan', 'Cc04_g12280' => 'ccan', 'Cc07_g10230' => 'ccan', 'CDE02G0093' => 'cde', 'CDE02G0701' => 'cde', 'CDE04G1050' => 'cde', 'CDE05G1833' => 'cde', 'CDE05G3058' => 'cde', 'CDE05G3380' => 'cde', 'CDE06G0536' => 'cde', 'Cfa006923' => 'cfa', 'Cfa009402' => 'cfa', 'Cfa018751' => 'cfa', 'Cfa019164' => 'cfa', 'Cfa022935' => 'cfa', 'Ciclev10019081m.g' => 'ccl', 'Ciclev10025076m.g' => 'ccl', 'Ciclev10030712m.g' => 'ccl', 'Ciclev10033760m.g' => 'ccl', 'CiPaw.05G105600' => 'cil', 'CiPaw.08G136700' => 'cil', 'CiPaw.11G003900' => 'cil', 'CiPaw.11G023700' => 'cil', 'CiPaw.12G003700' => 'cil', 'ClCG06G017100' => 'cla', 'ClCG06G018110' => 'cla', 'ClCG07G008800' => 'cla', 'ClCG07G015330' => 'cla', 'COL.COLO4_13698' => 'col', 'COL.COLO4_16659' => 'col', 'COL.COLO4_21986' => 'col', 'COL.COLO4_24049' => 'col', 'COL.COLO4_29061' => 'col', 'COL.COLO4_29075' => 'col', 'COL.COLO4_30094' => 'col', 'Cpa.g.c33689' => 'cpa', 'Cpa.g.sc108.39' => 'cpa', 'Cpa.g.sc108.41' => 'cpa', 'Cpa.g.sc1163.1' => 'cpa', 'Cpa.g.sc4.155' => 'cpa', 'Cpa.g.sc6.194' => 'cpa', 'CsaV3_1G000340' => 'csa', 'CsaV3_1G001400' => 'csa', 'CsaV3_4G002220' => 'csa', 'CsaV3_4G005370' => 'csa', 'CSS0007487' => 'camsi', 'CSS0008066' => 'camsi', 'CSS0009120' => 'camsi', 'CSS0015512' => 'camsi', 'CSS0022409' => 'camsi', 'CSS0025358' => 'camsi', 'CSS0044547' => 'camsi', 'DCAR_013057' => 'dca', 'DCAR_015058' => 'dca', 'DCAR_016027' => 'dca', 'DCAR_017327' => 'dca', 'DCAR_020743' => 'dca', 'DCAR_026157' => 'dca', 'DCAR_032339' => 'dca', 'DCAR_032340' => 'dca', 'Dinv11200' => 'din', 'Dinv11201' => 'din', 'Dinv20631' => 'din', 'Dinv23182' => 'din', 'Dinv33466' => 'din', 'Dinv33583' => 'din', 'Dinv38565' => 'din', 'Duzib068G0200' => 'dzi', 'Duzib147G0132' => 'dzi', 'Duzib147G0635' => 'dzi', 'Duzib205G1670' => 'dzi', 'Duzib251G0606' => 'dzi', 'ECA232G3336' => 'eca', 'ECA232G3763' => 'eca', 'ECA232G4845' => 'eca', 'ECA234G1607' => 'eca', 'ECA246G0932' => 'eca', 'ECA247G0781' => 'eca', 'ECA247G1932' => 'eca', 'ECA247G2079' => 'eca', 'ECA247G3338' => 'eca', 'ECA247G4115' => 'eca', 'EL10Ac3g06552' => 'bvu', 'EL10Ac5g10721' => 'bvu', 'EL10Ac5g10722' => 'bvu', 'EL10Ac5g10723' => 'bvu', 'EL10Ac5g11361' => 'bvu', 'EL10Ac6g13553' => 'bvu', 'EL10As8g23872' => 'bvu', 'Eucgr.B00250' => 'egr', 'Eucgr.B00251' => 'egr', 'Eucgr.B03533' => 'egr', 'Eucgr.I02381' => 'egr', 'Eucgr.K02700' => 'egr', 'FAN02G0174' => 'fan', 'FAN02G3146' => 'fan', 'FAN04G1672' => 'fan', 'FAN04G2273' => 'fan', 'FAN05G2791' => 'fan', 'FAN05G4035' => 'fan', 'FAN07G0834' => 'fan', 'FAN08G1198' => 'fan', 'FAN09G4182' => 'fan', 'FAN12G0496' => 'fan', 'FAN13G1027' => 'fan', 'FAN13G2951' => 'fan', 'FAN14G0705' => 'fan', 'FAN14G0720' => 'fan', 'FAN17G0201' => 'fan', 'FAN17G2665' => 'fan', 'FAN18G1456' => 'fan', 'FAN18G1525' => 'fan', 'FAN18G3500' => 'fan', 'FAN28G2670' => 'fan', 'FvH4_1g12391' => 'fve', 'FvH4_4g23220' => 'fve', 'FvH4_5g08810' => 'fve', 'FvH4_5g28960' => 'fve', 'FvH4_6g42820' => 'fve', 'FvH4_6g51110' => 'fve', 'Glyma.02G051802' => 'gma', 'Glyma.04G185300' => 'gma', 'Glyma.05G202900' => 'gma', 'Glyma.08G010300' => 'gma', 'Glyma.16G131900' => 'gma', 'Glyma.17G087900' => 'gma', 'Gohir.A07G048600' => 'ghi', 'Gohir.A11G179000' => 'ghi', 'Gohir.A12G140900' => 'ghi', 'Gohir.A12G140950' => 'ghi', 'Gohir.A12G191700' => 'ghi', 'Gohir.A13G086300' => 'ghi', 'Gohir.D07G052900' => 'ghi', 'Gohir.D11G186600' => 'ghi', 'Gohir.D12G145575' => 'ghi', 'Gohir.D12G145650' => 'ghi', 'Gohir.D12G145725' => 'ghi', 'Gohir.D12G194050' => 'ghi', 'Gohir.D13G091800' => 'ghi', 'Gorai.001G055900' => 'gra', 'Gorai.007G198400' => 'gra', 'Gorai.008G157000' => 'gra', 'Gorai.008G157100' => 'gra', 'Gorai.008G208700' => 'gra', 'Gorai.010G138700' => 'gra', 'GSVIVG01000977001' => 'vvi', 'GSVIVG01007708001' => 'vvi', 'GSVIVG01008587001' => 'vvi', 'GSVIVG01018849001' => 'vvi', 'GSVIVG01032432001' => 'vvi', 'HanXRQChr02g0034131' => 'han', 'HanXRQChr02g0035981' => 'han', 'HanXRQChr02g0035991' => 'han', 'HanXRQChr05g0155611' => 'han', 'HanXRQChr05g0155621' => 'han', 'HanXRQChr08g0236501' => 'han', 'HanXRQChr09g0261321' => 'han', 'HanXRQChr09g0272081' => 'han', 'HanXRQChr10g0310741' => 'han', 'HanXRQChr11g0325591' => 'han', 'HanXRQChr12g0385691' => 'han', 'HanXRQChr13g0387801' => 'han', 'HanXRQChr15g0463011' => 'han', 'Haze_03826' => 'cav', 'Haze_03827' => 'cav', 'Haze_07183' => 'cav', 'Haze_07537' => 'cav', 'Haze_07539' => 'cav', 'Haze_12461' => 'cav', 'Haze_16115' => 'cav', 'Haze_16808' => 'cav', 'Haze_18531' => 'cav', 'Hma1.2p1_0046F.1_g026700' => 'hma', 'Hma1.2p1_0046F.1_g026710' => 'hma', 'Hma1.2p1_0168F.1_g074340' => 'hma', 'Hma1.2p1_0266F.1_g107030' => 'hma', 'Hma1.2p1_0266F.1_g107060' => 'hma', 'Hma1.2p1_0275F.1_g110510' => 'hma', 'Hma1.2p1_0592F.1_g185490' => 'hma', 'Hma1.2p1_0592F.1_g185500' => 'hma', 'Hma1.2p1_0592F.1_g185510' => 'hma', 'Hma1.2p1_0592F.1_g185520' => 'hma', 'Hma1.2p1_0592F.1_g185530' => 'hma', 'Hma1.2p1_0818F.1_g223450' => 'hma', 'HPP92_009708' => 'vpl', 'HPP92_009793' => 'vpl', 'HPP92_009796' => 'vpl', 'HPP92_009797' => 'vpl', 'HPP92_014940' => 'vpl', 'HPP92_014988' => 'vpl', 'Hund02463' => 'sun', 'Hund02760' => 'sun', 'Hund05071' => 'sun', 'Hund10108' => 'sun', 'Hund11204' => 'sun', 'Hund14016' => 'sun', 'Hund16464' => 'sun', 'Lalb_Chr09g0333391' => 'lal', 'Lalb_Chr11g0070461' => 'lal', 'Lalb_Chr12g0201671' => 'lal', 'Lalb_Chr13g0297161' => 'lal', 'Lj1g0002823' => 'lja', 'Lj3C1074T6' => 'lonja', 'Lj4A212T28' => 'lonja', 'Lj4g0005516' => 'lja', 'Lj4g0013705' => 'lja', 'Lj4g0027865' => 'lja', 'Lj5C92G16' => 'lonja', 'Lj5C92T12' => 'lonja', 'Lj7C596T3' => 'lonja', 'Lj9A446G59' => 'lonja', 'Lj9A482G21' => 'lonja', 'Lsat_1_v5_gn_1_28261' => 'lsa', 'Lsat_1_v5_gn_1_28281' => 'lsa', 'Lsat_1_v5_gn_1_32721' => 'lsa', 'Lsat_1_v5_gn_4_151760' => 'lsa', 'Lsat_1_v5_gn_4_2120' => 'lsa', 'Lsat_1_v5_gn_4_75761' => 'lsa', 'Lsat_1_v5_gn_5_10920' => 'lsa', 'Manes.02G099900' => 'mes', 'Manes.11G096200' => 'mes', 'Manes.12G007200' => 'mes', 'Manes.14G048300' => 'mes', 'Manes.17G114700' => 'mes', 'Mapoly0002s0070' => 'mpo', 'Mapoly0029s0099' => 'mpo', 'MBI07_g24742_MAGBIO' => 'mbi', 'MBI10_g27988_MAGBIO' => 'mbi', 'MBI11_g13057_MAGBIO' => 'mbi', 'MD02G1137200' => 'mdo', 'MD06G1137200' => 'mdo', 'MD07G1122300' => 'mdo', 'MD09G1078200' => 'mdo', 'MD13G1123700' => 'mdo', 'MD14G1151900' => 'mdo', 'MD17G1030900' => 'mdo', 'MD17G1068200' => 'mdo', 'MD17G1068600' => 'mdo', 'Medtr3g077540' => 'mtr', 'Medtr4g105530' => 'mtr', 'Medtr8g076580' => 'mtr', 'Medtr8g076590' => 'mtr', 'Medtr8g096410' => 'mtr', 'MELO3C016411.2' => 'cme', 'MELO3C017780.2' => 'cme', 'MELO3C022560.2' => 'cme', 'MELO3C026187.2' => 'cme', 'MELO3C026286.2' => 'cme', 'MELO3C032854.2' => 'cme', 'Migut.H02495' => 'egut', 'Migut.I00561' => 'egut', 'Migut.K01015' => 'egut', 'Migut.K01016' => 'egut', 'Migut.L00743' => 'egut', 'Migut.L00744' => 'egut', 'Migut.L00746' => 'egut', 'Migut.L00798' => 'egut', 'Migut.L00799' => 'egut', 'Migut.N02096' => 'egut', 'MSTRG.11259' => 'ama', 'MSTRG.23142' => 'ama', 'MSTRG.2499' => 'ama', 'Nitab4.5_0000003g0730' => 'nta', 'Nitab4.5_0000137g0020' => 'nta', 'Nitab4.5_0000721g0210' => 'nta', 'Nitab4.5_0000723g0050' => 'nta', 'Nitab4.5_0000913g0070' => 'nta', 'Nitab4.5_0001332g0040' => 'nta', 'Nitab4.5_0001771g0050' => 'nta', 'Nitab4.5_0001918g0050' => 'nta', 'Nitab4.5_0002686g0030' => 'nta', 'Nitab4.5_0003156g0020' => 'nta', 'Nitab4.5_0003383g0040' => 'nta', 'Nitab4.5_0003918g0010' => 'nta', 'Nitab4.5_0006760g0010' => 'nta', 'Nn1g05981' => 'nnu', 'Nn1g06288' => 'nnu', 'Nn3g16371' => 'nnu', 'Nn3g16786' => 'nnu', 'Nn4g22232' => 'nnu', 'Oeu005144.1' => 'oeu', 'Oeu005145.1' => 'oeu', 'Oeu011348.1' => 'oeu', 'Oeu016415.1' => 'oeu', 'Oeu023501.1' => 'oeu', 'Oeu044473.1' => 'oeu', 'Oeu048892.2' => 'oeu', 'Os01g0549200' => 'osa', 'Os02g0469300' => 'osa', 'Os04g0311100' => 'osa', 'Os06g0474900' => 'osa', 'Os10g0181700' => 'osa', 'Os11g0454800' => 'osa', 'Peaxi162Scf00037g00714' => 'pax', 'Peaxi162Scf00084g01217' => 'pax', 'Peaxi162Scf00257g00217' => 'pax', 'Peaxi162Scf00516g00215' => 'pax', 'Peaxi162Scf00689g00123' => 'pax', 'PGR044G2719' => 'pgr', 'PGR083G1360' => 'pgr', 'PGR102G2849' => 'pgr', 'PGR119G2534' => 'pgr', 'PGSC0003DMG400003538' => 'stu', 'PGSC0003DMG400028138' => 'stu', 'PGSC0003DMG400031732' => 'stu', 'PGSC0003DMG400038165' => 'stu', 'Phvul.002G284600' => 'pvu', 'Phvul.003G258200' => 'pvu', 'Phvul.009G176500' => 'pvu', 'Potri.003G167201' => 'ptr', 'Potri.005G118400' => 'ptr', 'Potri.012G089000' => 'ptr', 'Potri.012G102800' => 'ptr', 'Potri.015G079400' => 'ptr', 'Potri.015G100900' => 'ptr', 'Pp3c14_9810' => 'ppa', 'Pp3c15_10450' => 'ppa', 'Pp3c20_19150' => 'ppa', 'Pp3c23_12740' => 'ppa', 'Pp3c23_6310' => 'ppa', 'Pp3c24_3720' => 'ppa', 'Pp3c27_2580' => 'ppa', 'Pp3c9_8990' => 'ppa', 'PRCOL_00002854' => 'pco', 'Prupe.1G221200' => 'ppe', 'Prupe.3G289000' => 'ppe', 'Prupe.5G147000' => 'ppe', 'Prupe.6G157300' => 'ppe', 'Prupe.7G163400' => 'ppe', 'Psat0s2177g0040' => 'psa', 'Psat3g174760' => 'psa', 'Psat3g192160' => 'psa', 'Psat4g058520' => 'psa', 'Psat4g096840' => 'psa', 'Psat7g037320' => 'psa', 'PSO017G1274' => 'pso', 'PSO017G5166' => 'pso', 'PSO063G4558' => 'pso', 'PSO170G4458' => 'pso', 'PSO170G5005' => 'pso', 'PSO210G6156' => 'pso', 'PSO210G6635' => 'pso', 'PSO210G7397' => 'pso', 'PSO210G7700' => 'pso', 'PSO455G0035' => 'pso', 'PSO455G0180' => 'pso', 'PSO478G4515' => 'pso', 'PSO832G1305' => 'pso', 'PSO832G3489' => 'pso', 'QL02p075247' => 'qlo', 'QL03p051148' => 'qlo', 'QL05p010313' => 'qlo', 'QL06p034627' => 'qlo', 'QL10p001889' => 'qlo', 'QL10p010846' => 'qlo', 'RcHm_v2.0_Chr1g0350621' => 'rch', 'RcHm_v2.0_Chr1g0350641' => 'rch', 'RcHm_v2.0_Chr2g0092891' => 'rch', 'RcHm_v2.0_Chr2g0100251' => 'rch', 'RcHm_v2.0_Chr2g0158661' => 'rch', 'RcHm_v2.0_Chr2g0172741' => 'rch', 'RcHm_v2.0_Chr4g0429571' => 'rch', 'RcHm_v2.0_Chr5g0042471' => 'rch', 'RcHm_v2.0_Chr7g0189451' => 'rch', 'Rhsim08G0052000' => 'rsi', 'Rhsim08G0174400' => 'rsi', 'Rhsim08G0193200' => 'rsi', 'Rhsim10G0214800' => 'rsi', 'Rhsim10G0214900' => 'rsi', 'Rhsim10G0215000' => 'rsi', 'Rhsim12G0022900' => 'rsi', 'Rhsim12G0177500' => 'rsi', 'Rhsim12G0177700' => 'rsi', 'Sabra03G0122600' => 'sbr', 'Sabra05G0097400' => 'sbr', 'Sabra12G0064100' => 'sbr', 'Sabra15G0121300' => 'sbr', 'SalBow2G0642' => 'sbo', 'SalBow5G2667' => 'sbo', 'SalBow5G4873' => 'sbo', 'SalBow8G2395' => 'sbo', 'Sc03g0003290' => 'sci', 'Sc10g0010130' => 'sci', 'Sc22g0003650' => 'sci', 'Sed0001603' => 'sed', 'Sed0004259' => 'sed', 'Sed0006789' => 'sed', 'Sed0011838' => 'sed', 'Sed0012964' => 'sed', 'Sed0016383' => 'sed', 'Sed0019010' => 'sed', 'Sed0020188' => 'sed', 'SEGI_04702' => 'sgi', 'SEGI_17231' => 'sgi', 'SEGI_18877' => 'sgi', 'SEGI_25196' => 'sgi', 'SEGI_25515' => 'sgi', 'SEGI_28445' => 'sgi', 'SEGI_37452' => 'sgi', 'SGA_v2.0_scaffold188G40336' => 'sas', 'SGA_v2.0_scaffold228G43247' => 'sas', 'SGA_v2.0_scaffold280G46853' => 'sas', 'SGA_v2.0_scaffold34G13808' => 'sas', 'SGA_v2.0_scaffold40G15576' => 'sas', 'SGA_v2.0_scaffold611G53188' => 'sas', 'SGA_v2.0_scaffold78G25461' => 'sas', 'SGA_v2.0_scaffold90G27888' => 'sas', 'SHI08601' => 'shi', 'SHI08606' => 'shi', 'SHI17117' => 'shi', 'SHI17119' => 'shi', 'SMO118G0201' => 'smo', 'SMO169G0247' => 'smo', 'SMO176G0006' => 'smo', 'SMO176G0015' => 'smo', 'SMO202G0006' => 'smo', 'SMO240G0050' => 'smo', 'SMO286G0009' => 'smo', 'SMO338G0033' => 'smo', 'SMO356G0533' => 'smo', 'SMO364G0382' => 'smo', 'SMO367G0166' => 'smo', 'SMO367G1098' => 'smo', 'Solyc01g009920.3' => 'sly', 'Solyc01g099300.3' => 'sly', 'Solyc02g084700.3' => 'sly', 'Solyc03g097520.3' => 'sly', 'Solyc06g071580.3' => 'sly', 'Solyc10g081760.3' => 'sly', 'Sopen01g005480' => 'spe', 'Sopen01g042850' => 'spe', 'Sopen02g029370' => 'spe', 'Sopen03g028280' => 'spe', 'Sopen06g027870' => 'spe', 'Sopen10g032270' => 'spe', 'Sp5g18180' => 'spa', 'Sp6g12880' => 'spa', 'Sp6g30850' => 'spa', 'Sp7g22960' => 'spa', 'Sp7g34010' => 'spa', 'SpUn1326_0010' => 'spa', 'TAR371G0242' => 'tar', 'TAR622G0638' => 'tar', 'TAR628G1548' => 'tar', 'TAR629G1079' => 'tar', 'TAR629G3413' => 'tar', 'THA.LOC104804249' => 'tha', 'THA.LOC104808315' => 'tha', 'THA.LOC104809238' => 'tha', 'THA.LOC104825484' => 'tha', 'Thecc.01G025500' => 'tca', 'Thecc.03G015800' => 'tca', 'Thecc.03G018000' => 'tca', 'Thecc.03G134800' => 'tca', 'Thecc.04G014700' => 'tca', 'Thhalv10006991m.g' => 'esa', 'Thhalv10012707m.g' => 'esa', 'Thhalv10015739m.g' => 'esa', 'Thhalv10024553m.g' => 'esa', 'Thhalv10024673m.g' => 'esa', 'Thhalv10029187m.g' => 'esa', 'TPR.G12971' => 'tpr', 'TPR.G29396' => 'tpr', 'TPR.G33376' => 'tpr', 'TPR.G35508' => 'tpr', 'TPR.G35516' => 'tpr', 'TPR.G37317' => 'tpr', 'TPR.G37389' => 'tpr', 'TPR.G37523' => 'tpr', 'TPR.G559' => 'tpr', 'TWI14G0070' => 'twi', 'TWI14G0729' => 'twi', 'TWI18G0596' => 'twi', 'TWI39G0780' => 'twi', 'TWI39G0850' => 'twi', 'TWI73G1052' => 'twi', 'unitig_52.g17485' => 'ugi', 'unitig_61.g26355' => 'ugi', 'vmacro01040' => 'vma', 'vmacro16731' => 'vma', 'vmacro18270' => 'vma', 'vmacro19142' => 'vma', 'vmacro19407' => 'vma', 'vmacro19408' => 'vma', 'vmacro21899' => 'vma', 'vmacro21900' => 'vma', 'vmacro21901' => 'vma', 'VMungo0251G0490' => 'vmu', 'VMungo0251G1748' => 'vmu', 'VMungo1309G0421' => 'vmu', 'Zm00001eb086500' => 'zma', 'Zm00001eb150680' => 'zma', 'Zm00001eb162330' => 'zma', 'Zm00001eb203130' => 'zma', 'Zm00001eb369480' => 'zma', 'Zm00001eb382340' => 'zma', 'Zm00001eb416360' => 'zma' ), 'gf_id' => 'HOM05D000902', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000902' ), 'data_identifier' => 'HOM05D000902', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000902', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '663', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02470' => 'bna', 'A01p16260' => 'bna', 'A02p01680' => 'bna', 'A03p16600' => 'bna', 'A03p55660' => 'bna', 'A03p64160' => 'bna', 'A03p64170' => 'bna', 'A08p31900' => 'bna', 'A09p59530' => 'bna', 'A10p08230' => 'bna', 'A10p25090' => 'bna', 'Aa31LG3G7100' => 'aar', 'Aa31LG3G7110' => 'aar', 'Aa31LG6G13160' => 'aar', 'Aa31LG7G10770' => 'aar', 'Aa31LG7G3830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2723' => 'aag', 'Actinidia08045' => 'ach', 'Actinidia08888' => 'ach', 'Actinidia18333' => 'ach', 'Actinidia19334' => 'ach', 'Actinidia25552' => 'ach', 'Actinidia26089' => 'ach', 'Actinidia30615' => 'ach', 'Actinidia30616' => 'ach', 'Actinidia33083' => 'ach', 'Actinidia35762' => 'ach', 'Ah.02g110620' => 'amhyb', 'Ah.11g046390' => 'amhyb', 'AL1G31670' => 'aly', 'AL6G23730' => 'aly', 'AL7G14740' => 'aly', 'AL7G14750' => 'aly', 'AL7G14760' => 'aly', 'AL7G28220' => 'aly', 'AL8G24940' => 'aly', 'Aqoxy3G01665' => 'aox', 'Aqoxy3G02853' => 'aox', 'Aqoxy5G01513' => 'aox', 'Aqoxy5G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8SKA4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ75LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKDA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0LJZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7REX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZP4YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWX7I5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2QKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS0L9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPCD8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q161UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC7XCF' => 'arhy', 'AT1G19100' => 'ath', 'AT4G24970' => 'ath', 'AT4G36270' => 'ath', 'AT4G36280' => 'ath', 'AT4G36290' => 'ath', 'AT5G13130' => 'ath', 'AT5G50780' => 'ath', 'ATR0582G266' => 'atr', 'ATR0661G195' => 'atr', 'ATR1152G031' => 'atr', 'Atru.chr11.2382' => 'acertr', 'Atru.chr12.2337' => 'acertr', 'Atru.chr3.744' => 'acertr', 'Atru.chr6.1870' => 'acertr', 'Atru.chr9.2515' => 'acertr', 'AUR62004120' => 'cqu', 'AUR62005667' => 'cqu', 'AUR62007634' => 'cqu', 'AUR62008186' => 'cqu', 'AUR62008187' => 'cqu', 'AUR62008188' => 'cqu', 'AUR62027954' => 'cqu', 'AUR62028766' => 'cqu', 'AUR62028767' => 'cqu', 'AUR62028768' => 'cqu', 'AUR62028886' => 'cqu', 'AUR62029563' => 'cqu', 'AUR62038832' => 'cqu', 'BcaB01g04149' => 'bca', 'BcaB03g12940' => 'bca', 'BcaB03g13090' => 'bca', 'BcaB03g14466' => 'bca', 'BcaB05g24035' => 'bca', 'BcaC01g06050' => 'bca', 'BcaC04g19148' => 'bca', 'BcaC04g20761' => 'bca', 'BcaC06g32845' => 'bca', 'BcaC07g41274' => 'bca', 'BcaC09g50827' => 'bca', 'BcaNung00741' => 'bca', 'BcaNung00742' => 'bca', 'BcaNung01859' => 'bca', 'BcaNung03985' => 'bca', 'BcaNung03989' => 'bca', 'BcaNung05661' => 'bca', 'BolC1t00257H' => 'bol', 'BolC1t01956H' => 'bol', 'BolC2t06534H' => 'bol', 'BolC3t14334H' => 'bol', 'BolC5t30451H' => 'bol', 'BolC7t45880H' => 'bol', 'BolC7t46586H' => 'bol', 'BolC8t49301H' => 'bol', 'BolC8t51837H' => 'bol', 'BolC9t56822H' => 'bol', 'BolC9t59235H' => 'bol', 'BraA01t00234Z' => 'bra', 'BraA01t01563Z' => 'bra', 'BraA02t05147Z' => 'bra', 'BraA03t10947Z' => 'bra', 'BraA03t14633Z' => 'bra', 'BraA08t35112Z' => 'bra', 'BraA09t41330Z' => 'bra', 'BraA10t44570Z' => 'bra', 'C01p02670' => 'bna', 'C01p20260' => 'bna', 'C02p05890' => 'bna', 'C03p19530' => 'bna', 'C05p17470' => 'bna', 'C07p53900' => 'bna', 'C07p61630' => 'bna', 'C08p16800' => 'bna', 'C08p42810' => 'bna', 'C09p39480' => 'bna', 'C09p63980' => 'bna', 'CAN.G1001.7' => 'can', 'CAN.G1034.55' => 'can', 'CAN.G143.7' => 'can', 'CAN.G3340.1' => 'can', 'CAN.G358.19' => 'can', 'CAN.G373.2' => 'can', 'CAN.G674.16' => 'can', 'CAN.G674.17' => 'can', 'CAN.G674.18' => 'can', 'CAN.G732.2' => 'can', 'CAN.G732.3' => 'can', 'CAN.G993.39' => 'can', 'CANSAT01G2052' => 'cansat', 'CANSAT80G0070' => 'cansat', 'CANSAT80G0483' => 'cansat', 'CANSAT80G0625' => 'cansat', 'CARHR019690' => 'chi', 'CARHR080280' => 'chi', 'CARHR152750' => 'chi', 'CARHR152760' => 'chi', 'CARHR152770' => 'chi', 'CARHR200340' => 'chi', 'CARHR232370' => 'chi', 'CARHR244670' => 'chi', 'CARHR244680' => 'chi', 'CARHR257520' => 'chi', 'Carub.0001s1872' => 'cru', 'Carub.0006s1130' => 'cru', 'Carub.0007s0396' => 'cru', 'Carub.0007s0397' => 'cru', 'Carub.0007s1608' => 'cru', 'Carub.0008s1068' => 'cru', 'Carub.0008s1077' => 'cru', 'Ca_16158_v3' => 'car', 'Ca_17571_v3' => 'car', 'Ca_21936_v3' => 'car', 'Ca_22350_v3' => 'car', 'CBR_g22445' => 'cbr', 'CBR_g26290' => 'cbr', 'Cc04_g09610' => 'ccan', 'Cc04_g12280' => 'ccan', 'Cc07_g10230' => 'ccan', 'CDE02G0093' => 'cde', 'CDE02G0701' => 'cde', 'CDE04G1050' => 'cde', 'CDE05G1833' => 'cde', 'CDE05G3058' => 'cde', 'CDE05G3380' => 'cde', 'CDE06G0536' => 'cde', 'Cfa006923' => 'cfa', 'Cfa009402' => 'cfa', 'Cfa018751' => 'cfa', 'Cfa019164' => 'cfa', 'Cfa022935' => 'cfa', 'Ciclev10019081m.g' => 'ccl', 'Ciclev10025076m.g' => 'ccl', 'Ciclev10030712m.g' => 'ccl', 'Ciclev10033760m.g' => 'ccl', 'CiPaw.05G105600' => 'cil', 'CiPaw.08G136700' => 'cil', 'CiPaw.11G003900' => 'cil', 'CiPaw.11G023700' => 'cil', 'CiPaw.12G003700' => 'cil', 'ClCG06G017100' => 'cla', 'ClCG06G018110' => 'cla', 'ClCG07G008800' => 'cla', 'ClCG07G015330' => 'cla', 'COL.COLO4_13698' => 'col', 'COL.COLO4_16659' => 'col', 'COL.COLO4_21986' => 'col', 'COL.COLO4_24049' => 'col', 'COL.COLO4_29061' => 'col', 'COL.COLO4_29075' => 'col', 'COL.COLO4_30094' => 'col', 'Cpa.g.c33689' => 'cpa', 'Cpa.g.sc108.39' => 'cpa', 'Cpa.g.sc108.41' => 'cpa', 'Cpa.g.sc1163.1' => 'cpa', 'Cpa.g.sc4.155' => 'cpa', 'Cpa.g.sc6.194' => 'cpa', 'CsaV3_1G000340' => 'csa', 'CsaV3_1G001400' => 'csa', 'CsaV3_4G002220' => 'csa', 'CsaV3_4G005370' => 'csa', 'CSS0007487' => 'camsi', 'CSS0008066' => 'camsi', 'CSS0009120' => 'camsi', 'CSS0015512' => 'camsi', 'CSS0022409' => 'camsi', 'CSS0025358' => 'camsi', 'CSS0044547' => 'camsi', 'DCAR_013057' => 'dca', 'DCAR_015058' => 'dca', 'DCAR_016027' => 'dca', 'DCAR_017327' => 'dca', 'DCAR_020743' => 'dca', 'DCAR_026157' => 'dca', 'DCAR_032339' => 'dca', 'DCAR_032340' => 'dca', 'Dinv11200' => 'din', 'Dinv11201' => 'din', 'Dinv20631' => 'din', 'Dinv23182' => 'din', 'Dinv33466' => 'din', 'Dinv33583' => 'din', 'Dinv38565' => 'din', 'Duzib068G0200' => 'dzi', 'Duzib147G0132' => 'dzi', 'Duzib147G0635' => 'dzi', 'Duzib205G1670' => 'dzi', 'Duzib251G0606' => 'dzi', 'ECA232G3336' => 'eca', 'ECA232G3763' => 'eca', 'ECA232G4845' => 'eca', 'ECA234G1607' => 'eca', 'ECA246G0932' => 'eca', 'ECA247G0781' => 'eca', 'ECA247G1932' => 'eca', 'ECA247G2079' => 'eca', 'ECA247G3338' => 'eca', 'ECA247G4115' => 'eca', 'EL10Ac3g06552' => 'bvu', 'EL10Ac5g10721' => 'bvu', 'EL10Ac5g10722' => 'bvu', 'EL10Ac5g10723' => 'bvu', 'EL10Ac5g11361' => 'bvu', 'EL10Ac6g13553' => 'bvu', 'EL10As8g23872' => 'bvu', 'Eucgr.B00250' => 'egr', 'Eucgr.B00251' => 'egr', 'Eucgr.B03533' => 'egr', 'Eucgr.I02381' => 'egr', 'Eucgr.K02700' => 'egr', 'FAN02G0174' => 'fan', 'FAN02G3146' => 'fan', 'FAN04G1672' => 'fan', 'FAN04G2273' => 'fan', 'FAN05G2791' => 'fan', 'FAN05G4035' => 'fan', 'FAN07G0834' => 'fan', 'FAN08G1198' => 'fan', 'FAN09G4182' => 'fan', 'FAN12G0496' => 'fan', 'FAN13G1027' => 'fan', 'FAN13G2951' => 'fan', 'FAN14G0705' => 'fan', 'FAN14G0720' => 'fan', 'FAN17G0201' => 'fan', 'FAN17G2665' => 'fan', 'FAN18G1456' => 'fan', 'FAN18G1525' => 'fan', 'FAN18G3500' => 'fan', 'FAN28G2670' => 'fan', 'FvH4_1g12391' => 'fve', 'FvH4_4g23220' => 'fve', 'FvH4_5g08810' => 'fve', 'FvH4_5g28960' => 'fve', 'FvH4_6g42820' => 'fve', 'FvH4_6g51110' => 'fve', 'Glyma.02G051802' => 'gma', 'Glyma.04G185300' => 'gma', 'Glyma.05G202900' => 'gma', 'Glyma.08G010300' => 'gma', 'Glyma.16G131900' => 'gma', 'Glyma.17G087900' => 'gma', 'Gohir.A07G048600' => 'ghi', 'Gohir.A11G179000' => 'ghi', 'Gohir.A12G140900' => 'ghi', 'Gohir.A12G140950' => 'ghi', 'Gohir.A12G191700' => 'ghi', 'Gohir.A13G086300' => 'ghi', 'Gohir.D07G052900' => 'ghi', 'Gohir.D11G186600' => 'ghi', 'Gohir.D12G145575' => 'ghi', 'Gohir.D12G145650' => 'ghi', 'Gohir.D12G145725' => 'ghi', 'Gohir.D12G194050' => 'ghi', 'Gohir.D13G091800' => 'ghi', 'Gorai.001G055900' => 'gra', 'Gorai.007G198400' => 'gra', 'Gorai.008G157000' => 'gra', 'Gorai.008G157100' => 'gra', 'Gorai.008G208700' => 'gra', 'Gorai.010G138700' => 'gra', 'GSVIVG01000977001' => 'vvi', 'GSVIVG01007708001' => 'vvi', 'GSVIVG01008587001' => 'vvi', 'GSVIVG01018849001' => 'vvi', 'GSVIVG01032432001' => 'vvi', 'HanXRQChr02g0034131' => 'han', 'HanXRQChr02g0035981' => 'han', 'HanXRQChr02g0035991' => 'han', 'HanXRQChr05g0155611' => 'han', 'HanXRQChr05g0155621' => 'han', 'HanXRQChr08g0236501' => 'han', 'HanXRQChr09g0261321' => 'han', 'HanXRQChr09g0272081' => 'han', 'HanXRQChr10g0310741' => 'han', 'HanXRQChr11g0325591' => 'han', 'HanXRQChr12g0385691' => 'han', 'HanXRQChr13g0387801' => 'han', 'HanXRQChr15g0463011' => 'han', 'Haze_03826' => 'cav', 'Haze_03827' => 'cav', 'Haze_07183' => 'cav', 'Haze_07537' => 'cav', 'Haze_07539' => 'cav', 'Haze_12461' => 'cav', 'Haze_16115' => 'cav', 'Haze_16808' => 'cav', 'Haze_18531' => 'cav', 'Hma1.2p1_0046F.1_g026700' => 'hma', 'Hma1.2p1_0046F.1_g026710' => 'hma', 'Hma1.2p1_0168F.1_g074340' => 'hma', 'Hma1.2p1_0266F.1_g107030' => 'hma', 'Hma1.2p1_0266F.1_g107060' => 'hma', 'Hma1.2p1_0275F.1_g110510' => 'hma', 'Hma1.2p1_0592F.1_g185490' => 'hma', 'Hma1.2p1_0592F.1_g185500' => 'hma', 'Hma1.2p1_0592F.1_g185510' => 'hma', 'Hma1.2p1_0592F.1_g185520' => 'hma', 'Hma1.2p1_0592F.1_g185530' => 'hma', 'Hma1.2p1_0818F.1_g223450' => 'hma', 'HPP92_009708' => 'vpl', 'HPP92_009793' => 'vpl', 'HPP92_009796' => 'vpl', 'HPP92_009797' => 'vpl', 'HPP92_014940' => 'vpl', 'HPP92_014988' => 'vpl', 'Hund02463' => 'sun', 'Hund02760' => 'sun', 'Hund05071' => 'sun', 'Hund10108' => 'sun', 'Hund11204' => 'sun', 'Hund14016' => 'sun', 'Hund16464' => 'sun', 'Lalb_Chr09g0333391' => 'lal', 'Lalb_Chr11g0070461' => 'lal', 'Lalb_Chr12g0201671' => 'lal', 'Lalb_Chr13g0297161' => 'lal', 'Lj1g0002823' => 'lja', 'Lj3C1074T6' => 'lonja', 'Lj4A212T28' => 'lonja', 'Lj4g0005516' => 'lja', 'Lj4g0013705' => 'lja', 'Lj4g0027865' => 'lja', 'Lj5C92G16' => 'lonja', 'Lj5C92T12' => 'lonja', 'Lj7C596T3' => 'lonja', 'Lj9A446G59' => 'lonja', 'Lj9A482G21' => 'lonja', 'Lsat_1_v5_gn_1_28261' => 'lsa', 'Lsat_1_v5_gn_1_28281' => 'lsa', 'Lsat_1_v5_gn_1_32721' => 'lsa', 'Lsat_1_v5_gn_4_151760' => 'lsa', 'Lsat_1_v5_gn_4_2120' => 'lsa', 'Lsat_1_v5_gn_4_75761' => 'lsa', 'Lsat_1_v5_gn_5_10920' => 'lsa', 'Manes.02G099900' => 'mes', 'Manes.11G096200' => 'mes', 'Manes.12G007200' => 'mes', 'Manes.14G048300' => 'mes', 'Manes.17G114700' => 'mes', 'Mapoly0002s0070' => 'mpo', 'Mapoly0029s0099' => 'mpo', 'MBI07_g24742_MAGBIO' => 'mbi', 'MBI10_g27988_MAGBIO' => 'mbi', 'MBI11_g13057_MAGBIO' => 'mbi', 'MD02G1137200' => 'mdo', 'MD06G1137200' => 'mdo', 'MD07G1122300' => 'mdo', 'MD09G1078200' => 'mdo', 'MD13G1123700' => 'mdo', 'MD14G1151900' => 'mdo', 'MD17G1030900' => 'mdo', 'MD17G1068200' => 'mdo', 'MD17G1068600' => 'mdo', 'Medtr3g077540' => 'mtr', 'Medtr4g105530' => 'mtr', 'Medtr8g076580' => 'mtr', 'Medtr8g076590' => 'mtr', 'Medtr8g096410' => 'mtr', 'MELO3C016411.2' => 'cme', 'MELO3C017780.2' => 'cme', 'MELO3C022560.2' => 'cme', 'MELO3C026187.2' => 'cme', 'MELO3C026286.2' => 'cme', 'MELO3C032854.2' => 'cme', 'Migut.H02495' => 'egut', 'Migut.I00561' => 'egut', 'Migut.K01015' => 'egut', 'Migut.K01016' => 'egut', 'Migut.L00743' => 'egut', 'Migut.L00744' => 'egut', 'Migut.L00746' => 'egut', 'Migut.L00798' => 'egut', 'Migut.L00799' => 'egut', 'Migut.N02096' => 'egut', 'MSTRG.11259' => 'ama', 'MSTRG.23142' => 'ama', 'MSTRG.2499' => 'ama', 'Nitab4.5_0000003g0730' => 'nta', 'Nitab4.5_0000137g0020' => 'nta', 'Nitab4.5_0000721g0210' => 'nta', 'Nitab4.5_0000723g0050' => 'nta', 'Nitab4.5_0000913g0070' => 'nta', 'Nitab4.5_0001332g0040' => 'nta', 'Nitab4.5_0001771g0050' => 'nta', 'Nitab4.5_0001918g0050' => 'nta', 'Nitab4.5_0002686g0030' => 'nta', 'Nitab4.5_0003156g0020' => 'nta', 'Nitab4.5_0003383g0040' => 'nta', 'Nitab4.5_0003918g0010' => 'nta', 'Nitab4.5_0006760g0010' => 'nta', 'Nn1g05981' => 'nnu', 'Nn1g06288' => 'nnu', 'Nn3g16371' => 'nnu', 'Nn3g16786' => 'nnu', 'Nn4g22232' => 'nnu', 'Oeu005144.1' => 'oeu', 'Oeu005145.1' => 'oeu', 'Oeu011348.1' => 'oeu', 'Oeu016415.1' => 'oeu', 'Oeu023501.1' => 'oeu', 'Oeu044473.1' => 'oeu', 'Oeu048892.2' => 'oeu', 'Os01g0549200' => 'osa', 'Os02g0469300' => 'osa', 'Os04g0311100' => 'osa', 'Os06g0474900' => 'osa', 'Os10g0181700' => 'osa', 'Os11g0454800' => 'osa', 'Peaxi162Scf00037g00714' => 'pax', 'Peaxi162Scf00084g01217' => 'pax', 'Peaxi162Scf00257g00217' => 'pax', 'Peaxi162Scf00516g00215' => 'pax', 'Peaxi162Scf00689g00123' => 'pax', 'PGR044G2719' => 'pgr', 'PGR083G1360' => 'pgr', 'PGR102G2849' => 'pgr', 'PGR119G2534' => 'pgr', 'PGSC0003DMG400003538' => 'stu', 'PGSC0003DMG400028138' => 'stu', 'PGSC0003DMG400031732' => 'stu', 'PGSC0003DMG400038165' => 'stu', 'Phvul.002G284600' => 'pvu', 'Phvul.003G258200' => 'pvu', 'Phvul.009G176500' => 'pvu', 'Potri.003G167201' => 'ptr', 'Potri.005G118400' => 'ptr', 'Potri.012G089000' => 'ptr', 'Potri.012G102800' => 'ptr', 'Potri.015G079400' => 'ptr', 'Potri.015G100900' => 'ptr', 'Pp3c14_9810' => 'ppa', 'Pp3c15_10450' => 'ppa', 'Pp3c20_19150' => 'ppa', 'Pp3c23_12740' => 'ppa', 'Pp3c23_6310' => 'ppa', 'Pp3c24_3720' => 'ppa', 'Pp3c27_2580' => 'ppa', 'Pp3c9_8990' => 'ppa', 'PRCOL_00002854' => 'pco', 'Prupe.1G221200' => 'ppe', 'Prupe.3G289000' => 'ppe', 'Prupe.5G147000' => 'ppe', 'Prupe.6G157300' => 'ppe', 'Prupe.7G163400' => 'ppe', 'Psat0s2177g0040' => 'psa', 'Psat3g174760' => 'psa', 'Psat3g192160' => 'psa', 'Psat4g058520' => 'psa', 'Psat4g096840' => 'psa', 'Psat7g037320' => 'psa', 'PSO017G1274' => 'pso', 'PSO017G5166' => 'pso', 'PSO063G4558' => 'pso', 'PSO170G4458' => 'pso', 'PSO170G5005' => 'pso', 'PSO210G6156' => 'pso', 'PSO210G6635' => 'pso', 'PSO210G7397' => 'pso', 'PSO210G7700' => 'pso', 'PSO455G0035' => 'pso', 'PSO455G0180' => 'pso', 'PSO478G4515' => 'pso', 'PSO832G1305' => 'pso', 'PSO832G3489' => 'pso', 'QL02p075247' => 'qlo', 'QL03p051148' => 'qlo', 'QL05p010313' => 'qlo', 'QL06p034627' => 'qlo', 'QL10p001889' => 'qlo', 'QL10p010846' => 'qlo', 'RcHm_v2.0_Chr1g0350621' => 'rch', 'RcHm_v2.0_Chr1g0350641' => 'rch', 'RcHm_v2.0_Chr2g0092891' => 'rch', 'RcHm_v2.0_Chr2g0100251' => 'rch', 'RcHm_v2.0_Chr2g0158661' => 'rch', 'RcHm_v2.0_Chr2g0172741' => 'rch', 'RcHm_v2.0_Chr4g0429571' => 'rch', 'RcHm_v2.0_Chr5g0042471' => 'rch', 'RcHm_v2.0_Chr7g0189451' => 'rch', 'Rhsim08G0052000' => 'rsi', 'Rhsim08G0174400' => 'rsi', 'Rhsim08G0193200' => 'rsi', 'Rhsim10G0214800' => 'rsi', 'Rhsim10G0214900' => 'rsi', 'Rhsim10G0215000' => 'rsi', 'Rhsim12G0022900' => 'rsi', 'Rhsim12G0177500' => 'rsi', 'Rhsim12G0177700' => 'rsi', 'Sabra03G0122600' => 'sbr', 'Sabra05G0097400' => 'sbr', 'Sabra12G0064100' => 'sbr', 'Sabra15G0121300' => 'sbr', 'SalBow2G0642' => 'sbo', 'SalBow5G2667' => 'sbo', 'SalBow5G4873' => 'sbo', 'SalBow8G2395' => 'sbo', 'Sc03g0003290' => 'sci', 'Sc10g0010130' => 'sci', 'Sc22g0003650' => 'sci', 'Sed0001603' => 'sed', 'Sed0004259' => 'sed', 'Sed0006789' => 'sed', 'Sed0011838' => 'sed', 'Sed0012964' => 'sed', 'Sed0016383' => 'sed', 'Sed0019010' => 'sed', 'Sed0020188' => 'sed', 'SEGI_04702' => 'sgi', 'SEGI_17231' => 'sgi', 'SEGI_18877' => 'sgi', 'SEGI_25196' => 'sgi', 'SEGI_25515' => 'sgi', 'SEGI_28445' => 'sgi', 'SEGI_37452' => 'sgi', 'SGA_v2.0_scaffold188G40336' => 'sas', 'SGA_v2.0_scaffold228G43247' => 'sas', 'SGA_v2.0_scaffold280G46853' => 'sas', 'SGA_v2.0_scaffold34G13808' => 'sas', 'SGA_v2.0_scaffold40G15576' => 'sas', 'SGA_v2.0_scaffold611G53188' => 'sas', 'SGA_v2.0_scaffold78G25461' => 'sas', 'SGA_v2.0_scaffold90G27888' => 'sas', 'SHI08601' => 'shi', 'SHI08606' => 'shi', 'SHI17117' => 'shi', 'SHI17119' => 'shi', 'SMO118G0201' => 'smo', 'SMO169G0247' => 'smo', 'SMO176G0006' => 'smo', 'SMO176G0015' => 'smo', 'SMO202G0006' => 'smo', 'SMO240G0050' => 'smo', 'SMO286G0009' => 'smo', 'SMO338G0033' => 'smo', 'SMO356G0533' => 'smo', 'SMO364G0382' => 'smo', 'SMO367G0166' => 'smo', 'SMO367G1098' => 'smo', 'Solyc01g009920.3' => 'sly', 'Solyc01g099300.3' => 'sly', 'Solyc02g084700.3' => 'sly', 'Solyc03g097520.3' => 'sly', 'Solyc06g071580.3' => 'sly', 'Solyc10g081760.3' => 'sly', 'Sopen01g005480' => 'spe', 'Sopen01g042850' => 'spe', 'Sopen02g029370' => 'spe', 'Sopen03g028280' => 'spe', 'Sopen06g027870' => 'spe', 'Sopen10g032270' => 'spe', 'Sp5g18180' => 'spa', 'Sp6g12880' => 'spa', 'Sp6g30850' => 'spa', 'Sp7g22960' => 'spa', 'Sp7g34010' => 'spa', 'SpUn1326_0010' => 'spa', 'TAR371G0242' => 'tar', 'TAR622G0638' => 'tar', 'TAR628G1548' => 'tar', 'TAR629G1079' => 'tar', 'TAR629G3413' => 'tar', 'THA.LOC104804249' => 'tha', 'THA.LOC104808315' => 'tha', 'THA.LOC104809238' => 'tha', 'THA.LOC104825484' => 'tha', 'Thecc.01G025500' => 'tca', 'Thecc.03G015800' => 'tca', 'Thecc.03G018000' => 'tca', 'Thecc.03G134800' => 'tca', 'Thecc.04G014700' => 'tca', 'Thhalv10006991m.g' => 'esa', 'Thhalv10012707m.g' => 'esa', 'Thhalv10015739m.g' => 'esa', 'Thhalv10024553m.g' => 'esa', 'Thhalv10024673m.g' => 'esa', 'Thhalv10029187m.g' => 'esa', 'TPR.G12971' => 'tpr', 'TPR.G29396' => 'tpr', 'TPR.G33376' => 'tpr', 'TPR.G35508' => 'tpr', 'TPR.G35516' => 'tpr', 'TPR.G37317' => 'tpr', 'TPR.G37389' => 'tpr', 'TPR.G37523' => 'tpr', 'TPR.G559' => 'tpr', 'TWI14G0070' => 'twi', 'TWI14G0729' => 'twi', 'TWI18G0596' => 'twi', 'TWI39G0780' => 'twi', 'TWI39G0850' => 'twi', 'TWI73G1052' => 'twi', 'unitig_52.g17485' => 'ugi', 'unitig_61.g26355' => 'ugi', 'vmacro01040' => 'vma', 'vmacro16731' => 'vma', 'vmacro18270' => 'vma', 'vmacro19142' => 'vma', 'vmacro19407' => 'vma', 'vmacro19408' => 'vma', 'vmacro21899' => 'vma', 'vmacro21900' => 'vma', 'vmacro21901' => 'vma', 'VMungo0251G0490' => 'vmu', 'VMungo0251G1748' => 'vmu', 'VMungo1309G0421' => 'vmu', 'Zm00001eb086500' => 'zma', 'Zm00001eb150680' => 'zma', 'Zm00001eb162330' => 'zma', 'Zm00001eb203130' => 'zma', 'Zm00001eb369480' => 'zma', 'Zm00001eb382340' => 'zma', 'Zm00001eb416360' => 'zma' ) $gf_id = 'HOM05D000902' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000902' ) $data_identifier = 'HOM05D000902' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 13, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 10, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 6, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 9, 'hma' => (int) 12, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 4, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 6, 'ppa' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 6, 'rch' => (int) 9, 'rsi' => (int) 9, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 12, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 3, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416360' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000902', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '663', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02470' => 'bna', 'A01p16260' => 'bna', 'A02p01680' => 'bna', 'A03p16600' => 'bna', 'A03p55660' => 'bna', 'A03p64160' => 'bna', 'A03p64170' => 'bna', 'A08p31900' => 'bna', 'A09p59530' => 'bna', 'A10p08230' => 'bna', 'A10p25090' => 'bna', 'Aa31LG3G7100' => 'aar', 'Aa31LG3G7110' => 'aar', 'Aa31LG6G13160' => 'aar', 'Aa31LG7G10770' => 'aar', 'Aa31LG7G3830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2723' => 'aag', 'Actinidia08045' => 'ach', 'Actinidia08888' => 'ach', 'Actinidia18333' => 'ach', 'Actinidia19334' => 'ach', 'Actinidia25552' => 'ach', 'Actinidia26089' => 'ach', 'Actinidia30615' => 'ach', 'Actinidia30616' => 'ach', 'Actinidia33083' => 'ach', 'Actinidia35762' => 'ach', 'Ah.02g110620' => 'amhyb', 'Ah.11g046390' => 'amhyb', 'AL1G31670' => 'aly', 'AL6G23730' => 'aly', 'AL7G14740' => 'aly', 'AL7G14750' => 'aly', 'AL7G14760' => 'aly', 'AL7G28220' => 'aly', 'AL8G24940' => 'aly', 'Aqoxy3G01665' => 'aox', 'Aqoxy3G02853' => 'aox', 'Aqoxy5G01513' => 'aox', 'Aqoxy5G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8SKA4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ75LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKDA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0LJZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7REX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZP4YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWX7I5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2QKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS0L9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPCD8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q161UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC7XCF' => 'arhy', 'AT1G19100' => 'ath', 'AT4G24970' => 'ath', 'AT4G36270' => 'ath', 'AT4G36280' => 'ath', 'AT4G36290' => 'ath', 'AT5G13130' => 'ath', 'AT5G50780' => 'ath', 'ATR0582G266' => 'atr', 'ATR0661G195' => 'atr', 'ATR1152G031' => 'atr', 'Atru.chr11.2382' => 'acertr', 'Atru.chr12.2337' => 'acertr', 'Atru.chr3.744' => 'acertr', 'Atru.chr6.1870' => 'acertr', 'Atru.chr9.2515' => 'acertr', 'AUR62004120' => 'cqu', 'AUR62005667' => 'cqu', 'AUR62007634' => 'cqu', 'AUR62008186' => 'cqu', 'AUR62008187' => 'cqu', 'AUR62008188' => 'cqu', 'AUR62027954' => 'cqu', 'AUR62028766' => 'cqu', 'AUR62028767' => 'cqu', 'AUR62028768' => 'cqu', 'AUR62028886' => 'cqu', 'AUR62029563' => 'cqu', 'AUR62038832' => 'cqu', 'BcaB01g04149' => 'bca', 'BcaB03g12940' => 'bca', 'BcaB03g13090' => 'bca', 'BcaB03g14466' => 'bca', 'BcaB05g24035' => 'bca', 'BcaC01g06050' => 'bca', 'BcaC04g19148' => 'bca', 'BcaC04g20761' => 'bca', 'BcaC06g32845' => 'bca', 'BcaC07g41274' => 'bca', 'BcaC09g50827' => 'bca', 'BcaNung00741' => 'bca', 'BcaNung00742' => 'bca', 'BcaNung01859' => 'bca', 'BcaNung03985' => 'bca', 'BcaNung03989' => 'bca', 'BcaNung05661' => 'bca', 'BolC1t00257H' => 'bol', 'BolC1t01956H' => 'bol', 'BolC2t06534H' => 'bol', 'BolC3t14334H' => 'bol', 'BolC5t30451H' => 'bol', 'BolC7t45880H' => 'bol', 'BolC7t46586H' => 'bol', 'BolC8t49301H' => 'bol', 'BolC8t51837H' => 'bol', 'BolC9t56822H' => 'bol', 'BolC9t59235H' => 'bol', 'BraA01t00234Z' => 'bra', 'BraA01t01563Z' => 'bra', 'BraA02t05147Z' => 'bra', 'BraA03t10947Z' => 'bra', 'BraA03t14633Z' => 'bra', 'BraA08t35112Z' => 'bra', 'BraA09t41330Z' => 'bra', 'BraA10t44570Z' => 'bra', 'C01p02670' => 'bna', 'C01p20260' => 'bna', 'C02p05890' => 'bna', 'C03p19530' => 'bna', 'C05p17470' => 'bna', 'C07p53900' => 'bna', 'C07p61630' => 'bna', 'C08p16800' => 'bna', 'C08p42810' => 'bna', 'C09p39480' => 'bna', 'C09p63980' => 'bna', 'CAN.G1001.7' => 'can', 'CAN.G1034.55' => 'can', 'CAN.G143.7' => 'can', 'CAN.G3340.1' => 'can', 'CAN.G358.19' => 'can', 'CAN.G373.2' => 'can', 'CAN.G674.16' => 'can', 'CAN.G674.17' => 'can', 'CAN.G674.18' => 'can', 'CAN.G732.2' => 'can', 'CAN.G732.3' => 'can', 'CAN.G993.39' => 'can', 'CANSAT01G2052' => 'cansat', 'CANSAT80G0070' => 'cansat', 'CANSAT80G0483' => 'cansat', 'CANSAT80G0625' => 'cansat', 'CARHR019690' => 'chi', 'CARHR080280' => 'chi', 'CARHR152750' => 'chi', 'CARHR152760' => 'chi', 'CARHR152770' => 'chi', 'CARHR200340' => 'chi', 'CARHR232370' => 'chi', 'CARHR244670' => 'chi', 'CARHR244680' => 'chi', 'CARHR257520' => 'chi', 'Carub.0001s1872' => 'cru', 'Carub.0006s1130' => 'cru', 'Carub.0007s0396' => 'cru', 'Carub.0007s0397' => 'cru', 'Carub.0007s1608' => 'cru', 'Carub.0008s1068' => 'cru', 'Carub.0008s1077' => 'cru', 'Ca_16158_v3' => 'car', 'Ca_17571_v3' => 'car', 'Ca_21936_v3' => 'car', 'Ca_22350_v3' => 'car', 'CBR_g22445' => 'cbr', 'CBR_g26290' => 'cbr', 'Cc04_g09610' => 'ccan', 'Cc04_g12280' => 'ccan', 'Cc07_g10230' => 'ccan', 'CDE02G0093' => 'cde', 'CDE02G0701' => 'cde', 'CDE04G1050' => 'cde', 'CDE05G1833' => 'cde', 'CDE05G3058' => 'cde', 'CDE05G3380' => 'cde', 'CDE06G0536' => 'cde', 'Cfa006923' => 'cfa', 'Cfa009402' => 'cfa', 'Cfa018751' => 'cfa', 'Cfa019164' => 'cfa', 'Cfa022935' => 'cfa', 'Ciclev10019081m.g' => 'ccl', 'Ciclev10025076m.g' => 'ccl', 'Ciclev10030712m.g' => 'ccl', 'Ciclev10033760m.g' => 'ccl', 'CiPaw.05G105600' => 'cil', 'CiPaw.08G136700' => 'cil', 'CiPaw.11G003900' => 'cil', 'CiPaw.11G023700' => 'cil', 'CiPaw.12G003700' => 'cil', 'ClCG06G017100' => 'cla', 'ClCG06G018110' => 'cla', 'ClCG07G008800' => 'cla', 'ClCG07G015330' => 'cla', 'COL.COLO4_13698' => 'col', 'COL.COLO4_16659' => 'col', 'COL.COLO4_21986' => 'col', 'COL.COLO4_24049' => 'col', 'COL.COLO4_29061' => 'col', 'COL.COLO4_29075' => 'col', 'COL.COLO4_30094' => 'col', 'Cpa.g.c33689' => 'cpa', 'Cpa.g.sc108.39' => 'cpa', 'Cpa.g.sc108.41' => 'cpa', 'Cpa.g.sc1163.1' => 'cpa', 'Cpa.g.sc4.155' => 'cpa', 'Cpa.g.sc6.194' => 'cpa', 'CsaV3_1G000340' => 'csa', 'CsaV3_1G001400' => 'csa', 'CsaV3_4G002220' => 'csa', 'CsaV3_4G005370' => 'csa', 'CSS0007487' => 'camsi', 'CSS0008066' => 'camsi', 'CSS0009120' => 'camsi', 'CSS0015512' => 'camsi', 'CSS0022409' => 'camsi', 'CSS0025358' => 'camsi', 'CSS0044547' => 'camsi', 'DCAR_013057' => 'dca', 'DCAR_015058' => 'dca', 'DCAR_016027' => 'dca', 'DCAR_017327' => 'dca', 'DCAR_020743' => 'dca', 'DCAR_026157' => 'dca', 'DCAR_032339' => 'dca', 'DCAR_032340' => 'dca', 'Dinv11200' => 'din', 'Dinv11201' => 'din', 'Dinv20631' => 'din', 'Dinv23182' => 'din', 'Dinv33466' => 'din', 'Dinv33583' => 'din', 'Dinv38565' => 'din', 'Duzib068G0200' => 'dzi', 'Duzib147G0132' => 'dzi', 'Duzib147G0635' => 'dzi', 'Duzib205G1670' => 'dzi', 'Duzib251G0606' => 'dzi', 'ECA232G3336' => 'eca', 'ECA232G3763' => 'eca', 'ECA232G4845' => 'eca', 'ECA234G1607' => 'eca', 'ECA246G0932' => 'eca', 'ECA247G0781' => 'eca', 'ECA247G1932' => 'eca', 'ECA247G2079' => 'eca', 'ECA247G3338' => 'eca', 'ECA247G4115' => 'eca', 'EL10Ac3g06552' => 'bvu', 'EL10Ac5g10721' => 'bvu', 'EL10Ac5g10722' => 'bvu', 'EL10Ac5g10723' => 'bvu', 'EL10Ac5g11361' => 'bvu', 'EL10Ac6g13553' => 'bvu', 'EL10As8g23872' => 'bvu', 'Eucgr.B00250' => 'egr', 'Eucgr.B00251' => 'egr', 'Eucgr.B03533' => 'egr', 'Eucgr.I02381' => 'egr', 'Eucgr.K02700' => 'egr', 'FAN02G0174' => 'fan', 'FAN02G3146' => 'fan', 'FAN04G1672' => 'fan', 'FAN04G2273' => 'fan', 'FAN05G2791' => 'fan', 'FAN05G4035' => 'fan', 'FAN07G0834' => 'fan', 'FAN08G1198' => 'fan', 'FAN09G4182' => 'fan', 'FAN12G0496' => 'fan', 'FAN13G1027' => 'fan', 'FAN13G2951' => 'fan', 'FAN14G0705' => 'fan', 'FAN14G0720' => 'fan', 'FAN17G0201' => 'fan', 'FAN17G2665' => 'fan', 'FAN18G1456' => 'fan', 'FAN18G1525' => 'fan', 'FAN18G3500' => 'fan', 'FAN28G2670' => 'fan', 'FvH4_1g12391' => 'fve', 'FvH4_4g23220' => 'fve', 'FvH4_5g08810' => 'fve', 'FvH4_5g28960' => 'fve', 'FvH4_6g42820' => 'fve', 'FvH4_6g51110' => 'fve', 'Glyma.02G051802' => 'gma', 'Glyma.04G185300' => 'gma', 'Glyma.05G202900' => 'gma', 'Glyma.08G010300' => 'gma', 'Glyma.16G131900' => 'gma', 'Glyma.17G087900' => 'gma', 'Gohir.A07G048600' => 'ghi', 'Gohir.A11G179000' => 'ghi', 'Gohir.A12G140900' => 'ghi', 'Gohir.A12G140950' => 'ghi', 'Gohir.A12G191700' => 'ghi', 'Gohir.A13G086300' => 'ghi', 'Gohir.D07G052900' => 'ghi', 'Gohir.D11G186600' => 'ghi', 'Gohir.D12G145575' => 'ghi', 'Gohir.D12G145650' => 'ghi', 'Gohir.D12G145725' => 'ghi', 'Gohir.D12G194050' => 'ghi', 'Gohir.D13G091800' => 'ghi', 'Gorai.001G055900' => 'gra', 'Gorai.007G198400' => 'gra', 'Gorai.008G157000' => 'gra', 'Gorai.008G157100' => 'gra', 'Gorai.008G208700' => 'gra', 'Gorai.010G138700' => 'gra', 'GSVIVG01000977001' => 'vvi', 'GSVIVG01007708001' => 'vvi', 'GSVIVG01008587001' => 'vvi', 'GSVIVG01018849001' => 'vvi', 'GSVIVG01032432001' => 'vvi', 'HanXRQChr02g0034131' => 'han', 'HanXRQChr02g0035981' => 'han', 'HanXRQChr02g0035991' => 'han', 'HanXRQChr05g0155611' => 'han', 'HanXRQChr05g0155621' => 'han', 'HanXRQChr08g0236501' => 'han', 'HanXRQChr09g0261321' => 'han', 'HanXRQChr09g0272081' => 'han', 'HanXRQChr10g0310741' => 'han', 'HanXRQChr11g0325591' => 'han', 'HanXRQChr12g0385691' => 'han', 'HanXRQChr13g0387801' => 'han', 'HanXRQChr15g0463011' => 'han', 'Haze_03826' => 'cav', 'Haze_03827' => 'cav', 'Haze_07183' => 'cav', 'Haze_07537' => 'cav', 'Haze_07539' => 'cav', 'Haze_12461' => 'cav', 'Haze_16115' => 'cav', 'Haze_16808' => 'cav', 'Haze_18531' => 'cav', 'Hma1.2p1_0046F.1_g026700' => 'hma', 'Hma1.2p1_0046F.1_g026710' => 'hma', 'Hma1.2p1_0168F.1_g074340' => 'hma', 'Hma1.2p1_0266F.1_g107030' => 'hma', 'Hma1.2p1_0266F.1_g107060' => 'hma', 'Hma1.2p1_0275F.1_g110510' => 'hma', 'Hma1.2p1_0592F.1_g185490' => 'hma', 'Hma1.2p1_0592F.1_g185500' => 'hma', 'Hma1.2p1_0592F.1_g185510' => 'hma', 'Hma1.2p1_0592F.1_g185520' => 'hma', 'Hma1.2p1_0592F.1_g185530' => 'hma', 'Hma1.2p1_0818F.1_g223450' => 'hma', 'HPP92_009708' => 'vpl', 'HPP92_009793' => 'vpl', 'HPP92_009796' => 'vpl', 'HPP92_009797' => 'vpl', 'HPP92_014940' => 'vpl', 'HPP92_014988' => 'vpl', 'Hund02463' => 'sun', 'Hund02760' => 'sun', 'Hund05071' => 'sun', 'Hund10108' => 'sun', 'Hund11204' => 'sun', 'Hund14016' => 'sun', 'Hund16464' => 'sun', 'Lalb_Chr09g0333391' => 'lal', 'Lalb_Chr11g0070461' => 'lal', 'Lalb_Chr12g0201671' => 'lal', 'Lalb_Chr13g0297161' => 'lal', 'Lj1g0002823' => 'lja', 'Lj3C1074T6' => 'lonja', 'Lj4A212T28' => 'lonja', 'Lj4g0005516' => 'lja', 'Lj4g0013705' => 'lja', 'Lj4g0027865' => 'lja', 'Lj5C92G16' => 'lonja', 'Lj5C92T12' => 'lonja', 'Lj7C596T3' => 'lonja', 'Lj9A446G59' => 'lonja', 'Lj9A482G21' => 'lonja', 'Lsat_1_v5_gn_1_28261' => 'lsa', 'Lsat_1_v5_gn_1_28281' => 'lsa', 'Lsat_1_v5_gn_1_32721' => 'lsa', 'Lsat_1_v5_gn_4_151760' => 'lsa', 'Lsat_1_v5_gn_4_2120' => 'lsa', 'Lsat_1_v5_gn_4_75761' => 'lsa', 'Lsat_1_v5_gn_5_10920' => 'lsa', 'Manes.02G099900' => 'mes', 'Manes.11G096200' => 'mes', 'Manes.12G007200' => 'mes', 'Manes.14G048300' => 'mes', 'Manes.17G114700' => 'mes', 'Mapoly0002s0070' => 'mpo', 'Mapoly0029s0099' => 'mpo', 'MBI07_g24742_MAGBIO' => 'mbi', 'MBI10_g27988_MAGBIO' => 'mbi', 'MBI11_g13057_MAGBIO' => 'mbi', 'MD02G1137200' => 'mdo', 'MD06G1137200' => 'mdo', 'MD07G1122300' => 'mdo', 'MD09G1078200' => 'mdo', 'MD13G1123700' => 'mdo', 'MD14G1151900' => 'mdo', 'MD17G1030900' => 'mdo', 'MD17G1068200' => 'mdo', 'MD17G1068600' => 'mdo', 'Medtr3g077540' => 'mtr', 'Medtr4g105530' => 'mtr', 'Medtr8g076580' => 'mtr', 'Medtr8g076590' => 'mtr', 'Medtr8g096410' => 'mtr', 'MELO3C016411.2' => 'cme', 'MELO3C017780.2' => 'cme', 'MELO3C022560.2' => 'cme', 'MELO3C026187.2' => 'cme', 'MELO3C026286.2' => 'cme', 'MELO3C032854.2' => 'cme', 'Migut.H02495' => 'egut', 'Migut.I00561' => 'egut', 'Migut.K01015' => 'egut', 'Migut.K01016' => 'egut', 'Migut.L00743' => 'egut', 'Migut.L00744' => 'egut', 'Migut.L00746' => 'egut', 'Migut.L00798' => 'egut', 'Migut.L00799' => 'egut', 'Migut.N02096' => 'egut', 'MSTRG.11259' => 'ama', 'MSTRG.23142' => 'ama', 'MSTRG.2499' => 'ama', 'Nitab4.5_0000003g0730' => 'nta', 'Nitab4.5_0000137g0020' => 'nta', 'Nitab4.5_0000721g0210' => 'nta', 'Nitab4.5_0000723g0050' => 'nta', 'Nitab4.5_0000913g0070' => 'nta', 'Nitab4.5_0001332g0040' => 'nta', 'Nitab4.5_0001771g0050' => 'nta', 'Nitab4.5_0001918g0050' => 'nta', 'Nitab4.5_0002686g0030' => 'nta', 'Nitab4.5_0003156g0020' => 'nta', 'Nitab4.5_0003383g0040' => 'nta', 'Nitab4.5_0003918g0010' => 'nta', 'Nitab4.5_0006760g0010' => 'nta', 'Nn1g05981' => 'nnu', 'Nn1g06288' => 'nnu', 'Nn3g16371' => 'nnu', 'Nn3g16786' => 'nnu', 'Nn4g22232' => 'nnu', 'Oeu005144.1' => 'oeu', 'Oeu005145.1' => 'oeu', 'Oeu011348.1' => 'oeu', 'Oeu016415.1' => 'oeu', 'Oeu023501.1' => 'oeu', 'Oeu044473.1' => 'oeu', 'Oeu048892.2' => 'oeu', 'Os01g0549200' => 'osa', 'Os02g0469300' => 'osa', 'Os04g0311100' => 'osa', 'Os06g0474900' => 'osa', 'Os10g0181700' => 'osa', 'Os11g0454800' => 'osa', 'Peaxi162Scf00037g00714' => 'pax', 'Peaxi162Scf00084g01217' => 'pax', 'Peaxi162Scf00257g00217' => 'pax', 'Peaxi162Scf00516g00215' => 'pax', 'Peaxi162Scf00689g00123' => 'pax', 'PGR044G2719' => 'pgr', 'PGR083G1360' => 'pgr', 'PGR102G2849' => 'pgr', 'PGR119G2534' => 'pgr', 'PGSC0003DMG400003538' => 'stu', 'PGSC0003DMG400028138' => 'stu', 'PGSC0003DMG400031732' => 'stu', 'PGSC0003DMG400038165' => 'stu', 'Phvul.002G284600' => 'pvu', 'Phvul.003G258200' => 'pvu', 'Phvul.009G176500' => 'pvu', 'Potri.003G167201' => 'ptr', 'Potri.005G118400' => 'ptr', 'Potri.012G089000' => 'ptr', 'Potri.012G102800' => 'ptr', 'Potri.015G079400' => 'ptr', 'Potri.015G100900' => 'ptr', 'Pp3c14_9810' => 'ppa', 'Pp3c15_10450' => 'ppa', 'Pp3c20_19150' => 'ppa', 'Pp3c23_12740' => 'ppa', 'Pp3c23_6310' => 'ppa', 'Pp3c24_3720' => 'ppa', 'Pp3c27_2580' => 'ppa', 'Pp3c9_8990' => 'ppa', 'PRCOL_00002854' => 'pco', 'Prupe.1G221200' => 'ppe', 'Prupe.3G289000' => 'ppe', 'Prupe.5G147000' => 'ppe', 'Prupe.6G157300' => 'ppe', 'Prupe.7G163400' => 'ppe', 'Psat0s2177g0040' => 'psa', 'Psat3g174760' => 'psa', 'Psat3g192160' => 'psa', 'Psat4g058520' => 'psa', 'Psat4g096840' => 'psa', 'Psat7g037320' => 'psa', 'PSO017G1274' => 'pso', 'PSO017G5166' => 'pso', 'PSO063G4558' => 'pso', 'PSO170G4458' => 'pso', 'PSO170G5005' => 'pso', 'PSO210G6156' => 'pso', 'PSO210G6635' => 'pso', 'PSO210G7397' => 'pso', 'PSO210G7700' => 'pso', 'PSO455G0035' => 'pso', 'PSO455G0180' => 'pso', 'PSO478G4515' => 'pso', 'PSO832G1305' => 'pso', 'PSO832G3489' => 'pso', 'QL02p075247' => 'qlo', 'QL03p051148' => 'qlo', 'QL05p010313' => 'qlo', 'QL06p034627' => 'qlo', 'QL10p001889' => 'qlo', 'QL10p010846' => 'qlo', 'RcHm_v2.0_Chr1g0350621' => 'rch', 'RcHm_v2.0_Chr1g0350641' => 'rch', 'RcHm_v2.0_Chr2g0092891' => 'rch', 'RcHm_v2.0_Chr2g0100251' => 'rch', 'RcHm_v2.0_Chr2g0158661' => 'rch', 'RcHm_v2.0_Chr2g0172741' => 'rch', 'RcHm_v2.0_Chr4g0429571' => 'rch', 'RcHm_v2.0_Chr5g0042471' => 'rch', 'RcHm_v2.0_Chr7g0189451' => 'rch', 'Rhsim08G0052000' => 'rsi', 'Rhsim08G0174400' => 'rsi', 'Rhsim08G0193200' => 'rsi', 'Rhsim10G0214800' => 'rsi', 'Rhsim10G0214900' => 'rsi', 'Rhsim10G0215000' => 'rsi', 'Rhsim12G0022900' => 'rsi', 'Rhsim12G0177500' => 'rsi', 'Rhsim12G0177700' => 'rsi', 'Sabra03G0122600' => 'sbr', 'Sabra05G0097400' => 'sbr', 'Sabra12G0064100' => 'sbr', 'Sabra15G0121300' => 'sbr', 'SalBow2G0642' => 'sbo', 'SalBow5G2667' => 'sbo', 'SalBow5G4873' => 'sbo', 'SalBow8G2395' => 'sbo', 'Sc03g0003290' => 'sci', 'Sc10g0010130' => 'sci', 'Sc22g0003650' => 'sci', 'Sed0001603' => 'sed', 'Sed0004259' => 'sed', 'Sed0006789' => 'sed', 'Sed0011838' => 'sed', 'Sed0012964' => 'sed', 'Sed0016383' => 'sed', 'Sed0019010' => 'sed', 'Sed0020188' => 'sed', 'SEGI_04702' => 'sgi', 'SEGI_17231' => 'sgi', 'SEGI_18877' => 'sgi', 'SEGI_25196' => 'sgi', 'SEGI_25515' => 'sgi', 'SEGI_28445' => 'sgi', 'SEGI_37452' => 'sgi', 'SGA_v2.0_scaffold188G40336' => 'sas', 'SGA_v2.0_scaffold228G43247' => 'sas', 'SGA_v2.0_scaffold280G46853' => 'sas', 'SGA_v2.0_scaffold34G13808' => 'sas', 'SGA_v2.0_scaffold40G15576' => 'sas', 'SGA_v2.0_scaffold611G53188' => 'sas', 'SGA_v2.0_scaffold78G25461' => 'sas', 'SGA_v2.0_scaffold90G27888' => 'sas', 'SHI08601' => 'shi', 'SHI08606' => 'shi', 'SHI17117' => 'shi', 'SHI17119' => 'shi', 'SMO118G0201' => 'smo', 'SMO169G0247' => 'smo', 'SMO176G0006' => 'smo', 'SMO176G0015' => 'smo', 'SMO202G0006' => 'smo', 'SMO240G0050' => 'smo', 'SMO286G0009' => 'smo', 'SMO338G0033' => 'smo', 'SMO356G0533' => 'smo', 'SMO364G0382' => 'smo', 'SMO367G0166' => 'smo', 'SMO367G1098' => 'smo', 'Solyc01g009920.3' => 'sly', 'Solyc01g099300.3' => 'sly', 'Solyc02g084700.3' => 'sly', 'Solyc03g097520.3' => 'sly', 'Solyc06g071580.3' => 'sly', 'Solyc10g081760.3' => 'sly', 'Sopen01g005480' => 'spe', 'Sopen01g042850' => 'spe', 'Sopen02g029370' => 'spe', 'Sopen03g028280' => 'spe', 'Sopen06g027870' => 'spe', 'Sopen10g032270' => 'spe', 'Sp5g18180' => 'spa', 'Sp6g12880' => 'spa', 'Sp6g30850' => 'spa', 'Sp7g22960' => 'spa', 'Sp7g34010' => 'spa', 'SpUn1326_0010' => 'spa', 'TAR371G0242' => 'tar', 'TAR622G0638' => 'tar', 'TAR628G1548' => 'tar', 'TAR629G1079' => 'tar', 'TAR629G3413' => 'tar', 'THA.LOC104804249' => 'tha', 'THA.LOC104808315' => 'tha', 'THA.LOC104809238' => 'tha', 'THA.LOC104825484' => 'tha', 'Thecc.01G025500' => 'tca', 'Thecc.03G015800' => 'tca', 'Thecc.03G018000' => 'tca', 'Thecc.03G134800' => 'tca', 'Thecc.04G014700' => 'tca', 'Thhalv10006991m.g' => 'esa', 'Thhalv10012707m.g' => 'esa', 'Thhalv10015739m.g' => 'esa', 'Thhalv10024553m.g' => 'esa', 'Thhalv10024673m.g' => 'esa', 'Thhalv10029187m.g' => 'esa', 'TPR.G12971' => 'tpr', 'TPR.G29396' => 'tpr', 'TPR.G33376' => 'tpr', 'TPR.G35508' => 'tpr', 'TPR.G35516' => 'tpr', 'TPR.G37317' => 'tpr', 'TPR.G37389' => 'tpr', 'TPR.G37523' => 'tpr', 'TPR.G559' => 'tpr', 'TWI14G0070' => 'twi', 'TWI14G0729' => 'twi', 'TWI18G0596' => 'twi', 'TWI39G0780' => 'twi', 'TWI39G0850' => 'twi', 'TWI73G1052' => 'twi', 'unitig_52.g17485' => 'ugi', 'unitig_61.g26355' => 'ugi', 'vmacro01040' => 'vma', 'vmacro16731' => 'vma', 'vmacro18270' => 'vma', 'vmacro19142' => 'vma', 'vmacro19407' => 'vma', 'vmacro19408' => 'vma', 'vmacro21899' => 'vma', 'vmacro21900' => 'vma', 'vmacro21901' => 'vma', 'VMungo0251G0490' => 'vmu', 'VMungo0251G1748' => 'vmu', 'VMungo1309G0421' => 'vmu', 'Zm00001eb086500' => 'zma', 'Zm00001eb150680' => 'zma', 'Zm00001eb162330' => 'zma', 'Zm00001eb203130' => 'zma', 'Zm00001eb369480' => 'zma', 'Zm00001eb382340' => 'zma', 'Zm00001eb416360' => 'zma' ), 'gf_id' => 'HOM05D000902', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000902' ), 'data_identifier' => 'HOM05D000902', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000902', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '663', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02470' => 'bna', 'A01p16260' => 'bna', 'A02p01680' => 'bna', 'A03p16600' => 'bna', 'A03p55660' => 'bna', 'A03p64160' => 'bna', 'A03p64170' => 'bna', 'A08p31900' => 'bna', 'A09p59530' => 'bna', 'A10p08230' => 'bna', 'A10p25090' => 'bna', 'Aa31LG3G7100' => 'aar', 'Aa31LG3G7110' => 'aar', 'Aa31LG6G13160' => 'aar', 'Aa31LG7G10770' => 'aar', 'Aa31LG7G3830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2723' => 'aag', 'Actinidia08045' => 'ach', 'Actinidia08888' => 'ach', 'Actinidia18333' => 'ach', 'Actinidia19334' => 'ach', 'Actinidia25552' => 'ach', 'Actinidia26089' => 'ach', 'Actinidia30615' => 'ach', 'Actinidia30616' => 'ach', 'Actinidia33083' => 'ach', 'Actinidia35762' => 'ach', 'Ah.02g110620' => 'amhyb', 'Ah.11g046390' => 'amhyb', 'AL1G31670' => 'aly', 'AL6G23730' => 'aly', 'AL7G14740' => 'aly', 'AL7G14750' => 'aly', 'AL7G14760' => 'aly', 'AL7G28220' => 'aly', 'AL8G24940' => 'aly', 'Aqoxy3G01665' => 'aox', 'Aqoxy3G02853' => 'aox', 'Aqoxy5G01513' => 'aox', 'Aqoxy5G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8SKA4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ75LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKDA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0LJZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7REX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZP4YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWX7I5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2QKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS0L9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPCD8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q161UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC7XCF' => 'arhy', 'AT1G19100' => 'ath', 'AT4G24970' => 'ath', 'AT4G36270' => 'ath', 'AT4G36280' => 'ath', 'AT4G36290' => 'ath', 'AT5G13130' => 'ath', 'AT5G50780' => 'ath', 'ATR0582G266' => 'atr', 'ATR0661G195' => 'atr', 'ATR1152G031' => 'atr', 'Atru.chr11.2382' => 'acertr', 'Atru.chr12.2337' => 'acertr', 'Atru.chr3.744' => 'acertr', 'Atru.chr6.1870' => 'acertr', 'Atru.chr9.2515' => 'acertr', 'AUR62004120' => 'cqu', 'AUR62005667' => 'cqu', 'AUR62007634' => 'cqu', 'AUR62008186' => 'cqu', 'AUR62008187' => 'cqu', 'AUR62008188' => 'cqu', 'AUR62027954' => 'cqu', 'AUR62028766' => 'cqu', 'AUR62028767' => 'cqu', 'AUR62028768' => 'cqu', 'AUR62028886' => 'cqu', 'AUR62029563' => 'cqu', 'AUR62038832' => 'cqu', 'BcaB01g04149' => 'bca', 'BcaB03g12940' => 'bca', 'BcaB03g13090' => 'bca', 'BcaB03g14466' => 'bca', 'BcaB05g24035' => 'bca', 'BcaC01g06050' => 'bca', 'BcaC04g19148' => 'bca', 'BcaC04g20761' => 'bca', 'BcaC06g32845' => 'bca', 'BcaC07g41274' => 'bca', 'BcaC09g50827' => 'bca', 'BcaNung00741' => 'bca', 'BcaNung00742' => 'bca', 'BcaNung01859' => 'bca', 'BcaNung03985' => 'bca', 'BcaNung03989' => 'bca', 'BcaNung05661' => 'bca', 'BolC1t00257H' => 'bol', 'BolC1t01956H' => 'bol', 'BolC2t06534H' => 'bol', 'BolC3t14334H' => 'bol', 'BolC5t30451H' => 'bol', 'BolC7t45880H' => 'bol', 'BolC7t46586H' => 'bol', 'BolC8t49301H' => 'bol', 'BolC8t51837H' => 'bol', 'BolC9t56822H' => 'bol', 'BolC9t59235H' => 'bol', 'BraA01t00234Z' => 'bra', 'BraA01t01563Z' => 'bra', 'BraA02t05147Z' => 'bra', 'BraA03t10947Z' => 'bra', 'BraA03t14633Z' => 'bra', 'BraA08t35112Z' => 'bra', 'BraA09t41330Z' => 'bra', 'BraA10t44570Z' => 'bra', 'C01p02670' => 'bna', 'C01p20260' => 'bna', 'C02p05890' => 'bna', 'C03p19530' => 'bna', 'C05p17470' => 'bna', 'C07p53900' => 'bna', 'C07p61630' => 'bna', 'C08p16800' => 'bna', 'C08p42810' => 'bna', 'C09p39480' => 'bna', 'C09p63980' => 'bna', 'CAN.G1001.7' => 'can', 'CAN.G1034.55' => 'can', 'CAN.G143.7' => 'can', 'CAN.G3340.1' => 'can', 'CAN.G358.19' => 'can', 'CAN.G373.2' => 'can', 'CAN.G674.16' => 'can', 'CAN.G674.17' => 'can', 'CAN.G674.18' => 'can', 'CAN.G732.2' => 'can', 'CAN.G732.3' => 'can', 'CAN.G993.39' => 'can', 'CANSAT01G2052' => 'cansat', 'CANSAT80G0070' => 'cansat', 'CANSAT80G0483' => 'cansat', 'CANSAT80G0625' => 'cansat', 'CARHR019690' => 'chi', 'CARHR080280' => 'chi', 'CARHR152750' => 'chi', 'CARHR152760' => 'chi', 'CARHR152770' => 'chi', 'CARHR200340' => 'chi', 'CARHR232370' => 'chi', 'CARHR244670' => 'chi', 'CARHR244680' => 'chi', 'CARHR257520' => 'chi', 'Carub.0001s1872' => 'cru', 'Carub.0006s1130' => 'cru', 'Carub.0007s0396' => 'cru', 'Carub.0007s0397' => 'cru', 'Carub.0007s1608' => 'cru', 'Carub.0008s1068' => 'cru', 'Carub.0008s1077' => 'cru', 'Ca_16158_v3' => 'car', 'Ca_17571_v3' => 'car', 'Ca_21936_v3' => 'car', 'Ca_22350_v3' => 'car', 'CBR_g22445' => 'cbr', 'CBR_g26290' => 'cbr', 'Cc04_g09610' => 'ccan', 'Cc04_g12280' => 'ccan', 'Cc07_g10230' => 'ccan', 'CDE02G0093' => 'cde', 'CDE02G0701' => 'cde', 'CDE04G1050' => 'cde', 'CDE05G1833' => 'cde', 'CDE05G3058' => 'cde', 'CDE05G3380' => 'cde', 'CDE06G0536' => 'cde', 'Cfa006923' => 'cfa', 'Cfa009402' => 'cfa', 'Cfa018751' => 'cfa', 'Cfa019164' => 'cfa', 'Cfa022935' => 'cfa', 'Ciclev10019081m.g' => 'ccl', 'Ciclev10025076m.g' => 'ccl', 'Ciclev10030712m.g' => 'ccl', 'Ciclev10033760m.g' => 'ccl', 'CiPaw.05G105600' => 'cil', 'CiPaw.08G136700' => 'cil', 'CiPaw.11G003900' => 'cil', 'CiPaw.11G023700' => 'cil', 'CiPaw.12G003700' => 'cil', 'ClCG06G017100' => 'cla', 'ClCG06G018110' => 'cla', 'ClCG07G008800' => 'cla', 'ClCG07G015330' => 'cla', 'COL.COLO4_13698' => 'col', 'COL.COLO4_16659' => 'col', 'COL.COLO4_21986' => 'col', 'COL.COLO4_24049' => 'col', 'COL.COLO4_29061' => 'col', 'COL.COLO4_29075' => 'col', 'COL.COLO4_30094' => 'col', 'Cpa.g.c33689' => 'cpa', 'Cpa.g.sc108.39' => 'cpa', 'Cpa.g.sc108.41' => 'cpa', 'Cpa.g.sc1163.1' => 'cpa', 'Cpa.g.sc4.155' => 'cpa', 'Cpa.g.sc6.194' => 'cpa', 'CsaV3_1G000340' => 'csa', 'CsaV3_1G001400' => 'csa', 'CsaV3_4G002220' => 'csa', 'CsaV3_4G005370' => 'csa', 'CSS0007487' => 'camsi', 'CSS0008066' => 'camsi', 'CSS0009120' => 'camsi', 'CSS0015512' => 'camsi', 'CSS0022409' => 'camsi', 'CSS0025358' => 'camsi', 'CSS0044547' => 'camsi', 'DCAR_013057' => 'dca', 'DCAR_015058' => 'dca', 'DCAR_016027' => 'dca', 'DCAR_017327' => 'dca', 'DCAR_020743' => 'dca', 'DCAR_026157' => 'dca', 'DCAR_032339' => 'dca', 'DCAR_032340' => 'dca', 'Dinv11200' => 'din', 'Dinv11201' => 'din', 'Dinv20631' => 'din', 'Dinv23182' => 'din', 'Dinv33466' => 'din', 'Dinv33583' => 'din', 'Dinv38565' => 'din', 'Duzib068G0200' => 'dzi', 'Duzib147G0132' => 'dzi', 'Duzib147G0635' => 'dzi', 'Duzib205G1670' => 'dzi', 'Duzib251G0606' => 'dzi', 'ECA232G3336' => 'eca', 'ECA232G3763' => 'eca', 'ECA232G4845' => 'eca', 'ECA234G1607' => 'eca', 'ECA246G0932' => 'eca', 'ECA247G0781' => 'eca', 'ECA247G1932' => 'eca', 'ECA247G2079' => 'eca', 'ECA247G3338' => 'eca', 'ECA247G4115' => 'eca', 'EL10Ac3g06552' => 'bvu', 'EL10Ac5g10721' => 'bvu', 'EL10Ac5g10722' => 'bvu', 'EL10Ac5g10723' => 'bvu', 'EL10Ac5g11361' => 'bvu', 'EL10Ac6g13553' => 'bvu', 'EL10As8g23872' => 'bvu', 'Eucgr.B00250' => 'egr', 'Eucgr.B00251' => 'egr', 'Eucgr.B03533' => 'egr', 'Eucgr.I02381' => 'egr', 'Eucgr.K02700' => 'egr', 'FAN02G0174' => 'fan', 'FAN02G3146' => 'fan', 'FAN04G1672' => 'fan', 'FAN04G2273' => 'fan', 'FAN05G2791' => 'fan', 'FAN05G4035' => 'fan', 'FAN07G0834' => 'fan', 'FAN08G1198' => 'fan', 'FAN09G4182' => 'fan', 'FAN12G0496' => 'fan', 'FAN13G1027' => 'fan', 'FAN13G2951' => 'fan', 'FAN14G0705' => 'fan', 'FAN14G0720' => 'fan', 'FAN17G0201' => 'fan', 'FAN17G2665' => 'fan', 'FAN18G1456' => 'fan', 'FAN18G1525' => 'fan', 'FAN18G3500' => 'fan', 'FAN28G2670' => 'fan', 'FvH4_1g12391' => 'fve', 'FvH4_4g23220' => 'fve', 'FvH4_5g08810' => 'fve', 'FvH4_5g28960' => 'fve', 'FvH4_6g42820' => 'fve', 'FvH4_6g51110' => 'fve', 'Glyma.02G051802' => 'gma', 'Glyma.04G185300' => 'gma', 'Glyma.05G202900' => 'gma', 'Glyma.08G010300' => 'gma', 'Glyma.16G131900' => 'gma', 'Glyma.17G087900' => 'gma', 'Gohir.A07G048600' => 'ghi', 'Gohir.A11G179000' => 'ghi', 'Gohir.A12G140900' => 'ghi', 'Gohir.A12G140950' => 'ghi', 'Gohir.A12G191700' => 'ghi', 'Gohir.A13G086300' => 'ghi', 'Gohir.D07G052900' => 'ghi', 'Gohir.D11G186600' => 'ghi', 'Gohir.D12G145575' => 'ghi', 'Gohir.D12G145650' => 'ghi', 'Gohir.D12G145725' => 'ghi', 'Gohir.D12G194050' => 'ghi', 'Gohir.D13G091800' => 'ghi', 'Gorai.001G055900' => 'gra', 'Gorai.007G198400' => 'gra', 'Gorai.008G157000' => 'gra', 'Gorai.008G157100' => 'gra', 'Gorai.008G208700' => 'gra', 'Gorai.010G138700' => 'gra', 'GSVIVG01000977001' => 'vvi', 'GSVIVG01007708001' => 'vvi', 'GSVIVG01008587001' => 'vvi', 'GSVIVG01018849001' => 'vvi', 'GSVIVG01032432001' => 'vvi', 'HanXRQChr02g0034131' => 'han', 'HanXRQChr02g0035981' => 'han', 'HanXRQChr02g0035991' => 'han', 'HanXRQChr05g0155611' => 'han', 'HanXRQChr05g0155621' => 'han', 'HanXRQChr08g0236501' => 'han', 'HanXRQChr09g0261321' => 'han', 'HanXRQChr09g0272081' => 'han', 'HanXRQChr10g0310741' => 'han', 'HanXRQChr11g0325591' => 'han', 'HanXRQChr12g0385691' => 'han', 'HanXRQChr13g0387801' => 'han', 'HanXRQChr15g0463011' => 'han', 'Haze_03826' => 'cav', 'Haze_03827' => 'cav', 'Haze_07183' => 'cav', 'Haze_07537' => 'cav', 'Haze_07539' => 'cav', 'Haze_12461' => 'cav', 'Haze_16115' => 'cav', 'Haze_16808' => 'cav', 'Haze_18531' => 'cav', 'Hma1.2p1_0046F.1_g026700' => 'hma', 'Hma1.2p1_0046F.1_g026710' => 'hma', 'Hma1.2p1_0168F.1_g074340' => 'hma', 'Hma1.2p1_0266F.1_g107030' => 'hma', 'Hma1.2p1_0266F.1_g107060' => 'hma', 'Hma1.2p1_0275F.1_g110510' => 'hma', 'Hma1.2p1_0592F.1_g185490' => 'hma', 'Hma1.2p1_0592F.1_g185500' => 'hma', 'Hma1.2p1_0592F.1_g185510' => 'hma', 'Hma1.2p1_0592F.1_g185520' => 'hma', 'Hma1.2p1_0592F.1_g185530' => 'hma', 'Hma1.2p1_0818F.1_g223450' => 'hma', 'HPP92_009708' => 'vpl', 'HPP92_009793' => 'vpl', 'HPP92_009796' => 'vpl', 'HPP92_009797' => 'vpl', 'HPP92_014940' => 'vpl', 'HPP92_014988' => 'vpl', 'Hund02463' => 'sun', 'Hund02760' => 'sun', 'Hund05071' => 'sun', 'Hund10108' => 'sun', 'Hund11204' => 'sun', 'Hund14016' => 'sun', 'Hund16464' => 'sun', 'Lalb_Chr09g0333391' => 'lal', 'Lalb_Chr11g0070461' => 'lal', 'Lalb_Chr12g0201671' => 'lal', 'Lalb_Chr13g0297161' => 'lal', 'Lj1g0002823' => 'lja', 'Lj3C1074T6' => 'lonja', 'Lj4A212T28' => 'lonja', 'Lj4g0005516' => 'lja', 'Lj4g0013705' => 'lja', 'Lj4g0027865' => 'lja', 'Lj5C92G16' => 'lonja', 'Lj5C92T12' => 'lonja', 'Lj7C596T3' => 'lonja', 'Lj9A446G59' => 'lonja', 'Lj9A482G21' => 'lonja', 'Lsat_1_v5_gn_1_28261' => 'lsa', 'Lsat_1_v5_gn_1_28281' => 'lsa', 'Lsat_1_v5_gn_1_32721' => 'lsa', 'Lsat_1_v5_gn_4_151760' => 'lsa', 'Lsat_1_v5_gn_4_2120' => 'lsa', 'Lsat_1_v5_gn_4_75761' => 'lsa', 'Lsat_1_v5_gn_5_10920' => 'lsa', 'Manes.02G099900' => 'mes', 'Manes.11G096200' => 'mes', 'Manes.12G007200' => 'mes', 'Manes.14G048300' => 'mes', 'Manes.17G114700' => 'mes', 'Mapoly0002s0070' => 'mpo', 'Mapoly0029s0099' => 'mpo', 'MBI07_g24742_MAGBIO' => 'mbi', 'MBI10_g27988_MAGBIO' => 'mbi', 'MBI11_g13057_MAGBIO' => 'mbi', 'MD02G1137200' => 'mdo', 'MD06G1137200' => 'mdo', 'MD07G1122300' => 'mdo', 'MD09G1078200' => 'mdo', 'MD13G1123700' => 'mdo', 'MD14G1151900' => 'mdo', 'MD17G1030900' => 'mdo', 'MD17G1068200' => 'mdo', 'MD17G1068600' => 'mdo', 'Medtr3g077540' => 'mtr', 'Medtr4g105530' => 'mtr', 'Medtr8g076580' => 'mtr', 'Medtr8g076590' => 'mtr', 'Medtr8g096410' => 'mtr', 'MELO3C016411.2' => 'cme', 'MELO3C017780.2' => 'cme', 'MELO3C022560.2' => 'cme', 'MELO3C026187.2' => 'cme', 'MELO3C026286.2' => 'cme', 'MELO3C032854.2' => 'cme', 'Migut.H02495' => 'egut', 'Migut.I00561' => 'egut', 'Migut.K01015' => 'egut', 'Migut.K01016' => 'egut', 'Migut.L00743' => 'egut', 'Migut.L00744' => 'egut', 'Migut.L00746' => 'egut', 'Migut.L00798' => 'egut', 'Migut.L00799' => 'egut', 'Migut.N02096' => 'egut', 'MSTRG.11259' => 'ama', 'MSTRG.23142' => 'ama', 'MSTRG.2499' => 'ama', 'Nitab4.5_0000003g0730' => 'nta', 'Nitab4.5_0000137g0020' => 'nta', 'Nitab4.5_0000721g0210' => 'nta', 'Nitab4.5_0000723g0050' => 'nta', 'Nitab4.5_0000913g0070' => 'nta', 'Nitab4.5_0001332g0040' => 'nta', 'Nitab4.5_0001771g0050' => 'nta', 'Nitab4.5_0001918g0050' => 'nta', 'Nitab4.5_0002686g0030' => 'nta', 'Nitab4.5_0003156g0020' => 'nta', 'Nitab4.5_0003383g0040' => 'nta', 'Nitab4.5_0003918g0010' => 'nta', 'Nitab4.5_0006760g0010' => 'nta', 'Nn1g05981' => 'nnu', 'Nn1g06288' => 'nnu', 'Nn3g16371' => 'nnu', 'Nn3g16786' => 'nnu', 'Nn4g22232' => 'nnu', 'Oeu005144.1' => 'oeu', 'Oeu005145.1' => 'oeu', 'Oeu011348.1' => 'oeu', 'Oeu016415.1' => 'oeu', 'Oeu023501.1' => 'oeu', 'Oeu044473.1' => 'oeu', 'Oeu048892.2' => 'oeu', 'Os01g0549200' => 'osa', 'Os02g0469300' => 'osa', 'Os04g0311100' => 'osa', 'Os06g0474900' => 'osa', 'Os10g0181700' => 'osa', 'Os11g0454800' => 'osa', 'Peaxi162Scf00037g00714' => 'pax', 'Peaxi162Scf00084g01217' => 'pax', 'Peaxi162Scf00257g00217' => 'pax', 'Peaxi162Scf00516g00215' => 'pax', 'Peaxi162Scf00689g00123' => 'pax', 'PGR044G2719' => 'pgr', 'PGR083G1360' => 'pgr', 'PGR102G2849' => 'pgr', 'PGR119G2534' => 'pgr', 'PGSC0003DMG400003538' => 'stu', 'PGSC0003DMG400028138' => 'stu', 'PGSC0003DMG400031732' => 'stu', 'PGSC0003DMG400038165' => 'stu', 'Phvul.002G284600' => 'pvu', 'Phvul.003G258200' => 'pvu', 'Phvul.009G176500' => 'pvu', 'Potri.003G167201' => 'ptr', 'Potri.005G118400' => 'ptr', 'Potri.012G089000' => 'ptr', 'Potri.012G102800' => 'ptr', 'Potri.015G079400' => 'ptr', 'Potri.015G100900' => 'ptr', 'Pp3c14_9810' => 'ppa', 'Pp3c15_10450' => 'ppa', 'Pp3c20_19150' => 'ppa', 'Pp3c23_12740' => 'ppa', 'Pp3c23_6310' => 'ppa', 'Pp3c24_3720' => 'ppa', 'Pp3c27_2580' => 'ppa', 'Pp3c9_8990' => 'ppa', 'PRCOL_00002854' => 'pco', 'Prupe.1G221200' => 'ppe', 'Prupe.3G289000' => 'ppe', 'Prupe.5G147000' => 'ppe', 'Prupe.6G157300' => 'ppe', 'Prupe.7G163400' => 'ppe', 'Psat0s2177g0040' => 'psa', 'Psat3g174760' => 'psa', 'Psat3g192160' => 'psa', 'Psat4g058520' => 'psa', 'Psat4g096840' => 'psa', 'Psat7g037320' => 'psa', 'PSO017G1274' => 'pso', 'PSO017G5166' => 'pso', 'PSO063G4558' => 'pso', 'PSO170G4458' => 'pso', 'PSO170G5005' => 'pso', 'PSO210G6156' => 'pso', 'PSO210G6635' => 'pso', 'PSO210G7397' => 'pso', 'PSO210G7700' => 'pso', 'PSO455G0035' => 'pso', 'PSO455G0180' => 'pso', 'PSO478G4515' => 'pso', 'PSO832G1305' => 'pso', 'PSO832G3489' => 'pso', 'QL02p075247' => 'qlo', 'QL03p051148' => 'qlo', 'QL05p010313' => 'qlo', 'QL06p034627' => 'qlo', 'QL10p001889' => 'qlo', 'QL10p010846' => 'qlo', 'RcHm_v2.0_Chr1g0350621' => 'rch', 'RcHm_v2.0_Chr1g0350641' => 'rch', 'RcHm_v2.0_Chr2g0092891' => 'rch', 'RcHm_v2.0_Chr2g0100251' => 'rch', 'RcHm_v2.0_Chr2g0158661' => 'rch', 'RcHm_v2.0_Chr2g0172741' => 'rch', 'RcHm_v2.0_Chr4g0429571' => 'rch', 'RcHm_v2.0_Chr5g0042471' => 'rch', 'RcHm_v2.0_Chr7g0189451' => 'rch', 'Rhsim08G0052000' => 'rsi', 'Rhsim08G0174400' => 'rsi', 'Rhsim08G0193200' => 'rsi', 'Rhsim10G0214800' => 'rsi', 'Rhsim10G0214900' => 'rsi', 'Rhsim10G0215000' => 'rsi', 'Rhsim12G0022900' => 'rsi', 'Rhsim12G0177500' => 'rsi', 'Rhsim12G0177700' => 'rsi', 'Sabra03G0122600' => 'sbr', 'Sabra05G0097400' => 'sbr', 'Sabra12G0064100' => 'sbr', 'Sabra15G0121300' => 'sbr', 'SalBow2G0642' => 'sbo', 'SalBow5G2667' => 'sbo', 'SalBow5G4873' => 'sbo', 'SalBow8G2395' => 'sbo', 'Sc03g0003290' => 'sci', 'Sc10g0010130' => 'sci', 'Sc22g0003650' => 'sci', 'Sed0001603' => 'sed', 'Sed0004259' => 'sed', 'Sed0006789' => 'sed', 'Sed0011838' => 'sed', 'Sed0012964' => 'sed', 'Sed0016383' => 'sed', 'Sed0019010' => 'sed', 'Sed0020188' => 'sed', 'SEGI_04702' => 'sgi', 'SEGI_17231' => 'sgi', 'SEGI_18877' => 'sgi', 'SEGI_25196' => 'sgi', 'SEGI_25515' => 'sgi', 'SEGI_28445' => 'sgi', 'SEGI_37452' => 'sgi', 'SGA_v2.0_scaffold188G40336' => 'sas', 'SGA_v2.0_scaffold228G43247' => 'sas', 'SGA_v2.0_scaffold280G46853' => 'sas', 'SGA_v2.0_scaffold34G13808' => 'sas', 'SGA_v2.0_scaffold40G15576' => 'sas', 'SGA_v2.0_scaffold611G53188' => 'sas', 'SGA_v2.0_scaffold78G25461' => 'sas', 'SGA_v2.0_scaffold90G27888' => 'sas', 'SHI08601' => 'shi', 'SHI08606' => 'shi', 'SHI17117' => 'shi', 'SHI17119' => 'shi', 'SMO118G0201' => 'smo', 'SMO169G0247' => 'smo', 'SMO176G0006' => 'smo', 'SMO176G0015' => 'smo', 'SMO202G0006' => 'smo', 'SMO240G0050' => 'smo', 'SMO286G0009' => 'smo', 'SMO338G0033' => 'smo', 'SMO356G0533' => 'smo', 'SMO364G0382' => 'smo', 'SMO367G0166' => 'smo', 'SMO367G1098' => 'smo', 'Solyc01g009920.3' => 'sly', 'Solyc01g099300.3' => 'sly', 'Solyc02g084700.3' => 'sly', 'Solyc03g097520.3' => 'sly', 'Solyc06g071580.3' => 'sly', 'Solyc10g081760.3' => 'sly', 'Sopen01g005480' => 'spe', 'Sopen01g042850' => 'spe', 'Sopen02g029370' => 'spe', 'Sopen03g028280' => 'spe', 'Sopen06g027870' => 'spe', 'Sopen10g032270' => 'spe', 'Sp5g18180' => 'spa', 'Sp6g12880' => 'spa', 'Sp6g30850' => 'spa', 'Sp7g22960' => 'spa', 'Sp7g34010' => 'spa', 'SpUn1326_0010' => 'spa', 'TAR371G0242' => 'tar', 'TAR622G0638' => 'tar', 'TAR628G1548' => 'tar', 'TAR629G1079' => 'tar', 'TAR629G3413' => 'tar', 'THA.LOC104804249' => 'tha', 'THA.LOC104808315' => 'tha', 'THA.LOC104809238' => 'tha', 'THA.LOC104825484' => 'tha', 'Thecc.01G025500' => 'tca', 'Thecc.03G015800' => 'tca', 'Thecc.03G018000' => 'tca', 'Thecc.03G134800' => 'tca', 'Thecc.04G014700' => 'tca', 'Thhalv10006991m.g' => 'esa', 'Thhalv10012707m.g' => 'esa', 'Thhalv10015739m.g' => 'esa', 'Thhalv10024553m.g' => 'esa', 'Thhalv10024673m.g' => 'esa', 'Thhalv10029187m.g' => 'esa', 'TPR.G12971' => 'tpr', 'TPR.G29396' => 'tpr', 'TPR.G33376' => 'tpr', 'TPR.G35508' => 'tpr', 'TPR.G35516' => 'tpr', 'TPR.G37317' => 'tpr', 'TPR.G37389' => 'tpr', 'TPR.G37523' => 'tpr', 'TPR.G559' => 'tpr', 'TWI14G0070' => 'twi', 'TWI14G0729' => 'twi', 'TWI18G0596' => 'twi', 'TWI39G0780' => 'twi', 'TWI39G0850' => 'twi', 'TWI73G1052' => 'twi', 'unitig_52.g17485' => 'ugi', 'unitig_61.g26355' => 'ugi', 'vmacro01040' => 'vma', 'vmacro16731' => 'vma', 'vmacro18270' => 'vma', 'vmacro19142' => 'vma', 'vmacro19407' => 'vma', 'vmacro19408' => 'vma', 'vmacro21899' => 'vma', 'vmacro21900' => 'vma', 'vmacro21901' => 'vma', 'VMungo0251G0490' => 'vmu', 'VMungo0251G1748' => 'vmu', 'VMungo1309G0421' => 'vmu', 'Zm00001eb086500' => 'zma', 'Zm00001eb150680' => 'zma', 'Zm00001eb162330' => 'zma', 'Zm00001eb203130' => 'zma', 'Zm00001eb369480' => 'zma', 'Zm00001eb382340' => 'zma', 'Zm00001eb416360' => 'zma' ) $gf_id = 'HOM05D000902' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000902' ) $data_identifier = 'HOM05D000902' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 13, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 10, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 6, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 9, 'hma' => (int) 12, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 4, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 6, 'ppa' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 6, 'rch' => (int) 9, 'rsi' => (int) 9, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 12, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 3, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416360' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000902', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '663', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02470' => 'bna', 'A01p16260' => 'bna', 'A02p01680' => 'bna', 'A03p16600' => 'bna', 'A03p55660' => 'bna', 'A03p64160' => 'bna', 'A03p64170' => 'bna', 'A08p31900' => 'bna', 'A09p59530' => 'bna', 'A10p08230' => 'bna', 'A10p25090' => 'bna', 'Aa31LG3G7100' => 'aar', 'Aa31LG3G7110' => 'aar', 'Aa31LG6G13160' => 'aar', 'Aa31LG7G10770' => 'aar', 'Aa31LG7G3830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2723' => 'aag', 'Actinidia08045' => 'ach', 'Actinidia08888' => 'ach', 'Actinidia18333' => 'ach', 'Actinidia19334' => 'ach', 'Actinidia25552' => 'ach', 'Actinidia26089' => 'ach', 'Actinidia30615' => 'ach', 'Actinidia30616' => 'ach', 'Actinidia33083' => 'ach', 'Actinidia35762' => 'ach', 'Ah.02g110620' => 'amhyb', 'Ah.11g046390' => 'amhyb', 'AL1G31670' => 'aly', 'AL6G23730' => 'aly', 'AL7G14740' => 'aly', 'AL7G14750' => 'aly', 'AL7G14760' => 'aly', 'AL7G28220' => 'aly', 'AL8G24940' => 'aly', 'Aqoxy3G01665' => 'aox', 'Aqoxy3G02853' => 'aox', 'Aqoxy5G01513' => 'aox', 'Aqoxy5G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8SKA4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ75LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKDA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0LJZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7REX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZP4YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWX7I5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2QKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS0L9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPCD8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q161UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC7XCF' => 'arhy', 'AT1G19100' => 'ath', 'AT4G24970' => 'ath', 'AT4G36270' => 'ath', 'AT4G36280' => 'ath', 'AT4G36290' => 'ath', 'AT5G13130' => 'ath', 'AT5G50780' => 'ath', 'ATR0582G266' => 'atr', 'ATR0661G195' => 'atr', 'ATR1152G031' => 'atr', 'Atru.chr11.2382' => 'acertr', 'Atru.chr12.2337' => 'acertr', 'Atru.chr3.744' => 'acertr', 'Atru.chr6.1870' => 'acertr', 'Atru.chr9.2515' => 'acertr', 'AUR62004120' => 'cqu', 'AUR62005667' => 'cqu', 'AUR62007634' => 'cqu', 'AUR62008186' => 'cqu', 'AUR62008187' => 'cqu', 'AUR62008188' => 'cqu', 'AUR62027954' => 'cqu', 'AUR62028766' => 'cqu', 'AUR62028767' => 'cqu', 'AUR62028768' => 'cqu', 'AUR62028886' => 'cqu', 'AUR62029563' => 'cqu', 'AUR62038832' => 'cqu', 'BcaB01g04149' => 'bca', 'BcaB03g12940' => 'bca', 'BcaB03g13090' => 'bca', 'BcaB03g14466' => 'bca', 'BcaB05g24035' => 'bca', 'BcaC01g06050' => 'bca', 'BcaC04g19148' => 'bca', 'BcaC04g20761' => 'bca', 'BcaC06g32845' => 'bca', 'BcaC07g41274' => 'bca', 'BcaC09g50827' => 'bca', 'BcaNung00741' => 'bca', 'BcaNung00742' => 'bca', 'BcaNung01859' => 'bca', 'BcaNung03985' => 'bca', 'BcaNung03989' => 'bca', 'BcaNung05661' => 'bca', 'BolC1t00257H' => 'bol', 'BolC1t01956H' => 'bol', 'BolC2t06534H' => 'bol', 'BolC3t14334H' => 'bol', 'BolC5t30451H' => 'bol', 'BolC7t45880H' => 'bol', 'BolC7t46586H' => 'bol', 'BolC8t49301H' => 'bol', 'BolC8t51837H' => 'bol', 'BolC9t56822H' => 'bol', 'BolC9t59235H' => 'bol', 'BraA01t00234Z' => 'bra', 'BraA01t01563Z' => 'bra', 'BraA02t05147Z' => 'bra', 'BraA03t10947Z' => 'bra', 'BraA03t14633Z' => 'bra', 'BraA08t35112Z' => 'bra', 'BraA09t41330Z' => 'bra', 'BraA10t44570Z' => 'bra', 'C01p02670' => 'bna', 'C01p20260' => 'bna', 'C02p05890' => 'bna', 'C03p19530' => 'bna', 'C05p17470' => 'bna', 'C07p53900' => 'bna', 'C07p61630' => 'bna', 'C08p16800' => 'bna', 'C08p42810' => 'bna', 'C09p39480' => 'bna', 'C09p63980' => 'bna', 'CAN.G1001.7' => 'can', 'CAN.G1034.55' => 'can', 'CAN.G143.7' => 'can', 'CAN.G3340.1' => 'can', 'CAN.G358.19' => 'can', 'CAN.G373.2' => 'can', 'CAN.G674.16' => 'can', 'CAN.G674.17' => 'can', 'CAN.G674.18' => 'can', 'CAN.G732.2' => 'can', 'CAN.G732.3' => 'can', 'CAN.G993.39' => 'can', 'CANSAT01G2052' => 'cansat', 'CANSAT80G0070' => 'cansat', 'CANSAT80G0483' => 'cansat', 'CANSAT80G0625' => 'cansat', 'CARHR019690' => 'chi', 'CARHR080280' => 'chi', 'CARHR152750' => 'chi', 'CARHR152760' => 'chi', 'CARHR152770' => 'chi', 'CARHR200340' => 'chi', 'CARHR232370' => 'chi', 'CARHR244670' => 'chi', 'CARHR244680' => 'chi', 'CARHR257520' => 'chi', 'Carub.0001s1872' => 'cru', 'Carub.0006s1130' => 'cru', 'Carub.0007s0396' => 'cru', 'Carub.0007s0397' => 'cru', 'Carub.0007s1608' => 'cru', 'Carub.0008s1068' => 'cru', 'Carub.0008s1077' => 'cru', 'Ca_16158_v3' => 'car', 'Ca_17571_v3' => 'car', 'Ca_21936_v3' => 'car', 'Ca_22350_v3' => 'car', 'CBR_g22445' => 'cbr', 'CBR_g26290' => 'cbr', 'Cc04_g09610' => 'ccan', 'Cc04_g12280' => 'ccan', 'Cc07_g10230' => 'ccan', 'CDE02G0093' => 'cde', 'CDE02G0701' => 'cde', 'CDE04G1050' => 'cde', 'CDE05G1833' => 'cde', 'CDE05G3058' => 'cde', 'CDE05G3380' => 'cde', 'CDE06G0536' => 'cde', 'Cfa006923' => 'cfa', 'Cfa009402' => 'cfa', 'Cfa018751' => 'cfa', 'Cfa019164' => 'cfa', 'Cfa022935' => 'cfa', 'Ciclev10019081m.g' => 'ccl', 'Ciclev10025076m.g' => 'ccl', 'Ciclev10030712m.g' => 'ccl', 'Ciclev10033760m.g' => 'ccl', 'CiPaw.05G105600' => 'cil', 'CiPaw.08G136700' => 'cil', 'CiPaw.11G003900' => 'cil', 'CiPaw.11G023700' => 'cil', 'CiPaw.12G003700' => 'cil', 'ClCG06G017100' => 'cla', 'ClCG06G018110' => 'cla', 'ClCG07G008800' => 'cla', 'ClCG07G015330' => 'cla', 'COL.COLO4_13698' => 'col', 'COL.COLO4_16659' => 'col', 'COL.COLO4_21986' => 'col', 'COL.COLO4_24049' => 'col', 'COL.COLO4_29061' => 'col', 'COL.COLO4_29075' => 'col', 'COL.COLO4_30094' => 'col', 'Cpa.g.c33689' => 'cpa', 'Cpa.g.sc108.39' => 'cpa', 'Cpa.g.sc108.41' => 'cpa', 'Cpa.g.sc1163.1' => 'cpa', 'Cpa.g.sc4.155' => 'cpa', 'Cpa.g.sc6.194' => 'cpa', 'CsaV3_1G000340' => 'csa', 'CsaV3_1G001400' => 'csa', 'CsaV3_4G002220' => 'csa', 'CsaV3_4G005370' => 'csa', 'CSS0007487' => 'camsi', 'CSS0008066' => 'camsi', 'CSS0009120' => 'camsi', 'CSS0015512' => 'camsi', 'CSS0022409' => 'camsi', 'CSS0025358' => 'camsi', 'CSS0044547' => 'camsi', 'DCAR_013057' => 'dca', 'DCAR_015058' => 'dca', 'DCAR_016027' => 'dca', 'DCAR_017327' => 'dca', 'DCAR_020743' => 'dca', 'DCAR_026157' => 'dca', 'DCAR_032339' => 'dca', 'DCAR_032340' => 'dca', 'Dinv11200' => 'din', 'Dinv11201' => 'din', 'Dinv20631' => 'din', 'Dinv23182' => 'din', 'Dinv33466' => 'din', 'Dinv33583' => 'din', 'Dinv38565' => 'din', 'Duzib068G0200' => 'dzi', 'Duzib147G0132' => 'dzi', 'Duzib147G0635' => 'dzi', 'Duzib205G1670' => 'dzi', 'Duzib251G0606' => 'dzi', 'ECA232G3336' => 'eca', 'ECA232G3763' => 'eca', 'ECA232G4845' => 'eca', 'ECA234G1607' => 'eca', 'ECA246G0932' => 'eca', 'ECA247G0781' => 'eca', 'ECA247G1932' => 'eca', 'ECA247G2079' => 'eca', 'ECA247G3338' => 'eca', 'ECA247G4115' => 'eca', 'EL10Ac3g06552' => 'bvu', 'EL10Ac5g10721' => 'bvu', 'EL10Ac5g10722' => 'bvu', 'EL10Ac5g10723' => 'bvu', 'EL10Ac5g11361' => 'bvu', 'EL10Ac6g13553' => 'bvu', 'EL10As8g23872' => 'bvu', 'Eucgr.B00250' => 'egr', 'Eucgr.B00251' => 'egr', 'Eucgr.B03533' => 'egr', 'Eucgr.I02381' => 'egr', 'Eucgr.K02700' => 'egr', 'FAN02G0174' => 'fan', 'FAN02G3146' => 'fan', 'FAN04G1672' => 'fan', 'FAN04G2273' => 'fan', 'FAN05G2791' => 'fan', 'FAN05G4035' => 'fan', 'FAN07G0834' => 'fan', 'FAN08G1198' => 'fan', 'FAN09G4182' => 'fan', 'FAN12G0496' => 'fan', 'FAN13G1027' => 'fan', 'FAN13G2951' => 'fan', 'FAN14G0705' => 'fan', 'FAN14G0720' => 'fan', 'FAN17G0201' => 'fan', 'FAN17G2665' => 'fan', 'FAN18G1456' => 'fan', 'FAN18G1525' => 'fan', 'FAN18G3500' => 'fan', 'FAN28G2670' => 'fan', 'FvH4_1g12391' => 'fve', 'FvH4_4g23220' => 'fve', 'FvH4_5g08810' => 'fve', 'FvH4_5g28960' => 'fve', 'FvH4_6g42820' => 'fve', 'FvH4_6g51110' => 'fve', 'Glyma.02G051802' => 'gma', 'Glyma.04G185300' => 'gma', 'Glyma.05G202900' => 'gma', 'Glyma.08G010300' => 'gma', 'Glyma.16G131900' => 'gma', 'Glyma.17G087900' => 'gma', 'Gohir.A07G048600' => 'ghi', 'Gohir.A11G179000' => 'ghi', 'Gohir.A12G140900' => 'ghi', 'Gohir.A12G140950' => 'ghi', 'Gohir.A12G191700' => 'ghi', 'Gohir.A13G086300' => 'ghi', 'Gohir.D07G052900' => 'ghi', 'Gohir.D11G186600' => 'ghi', 'Gohir.D12G145575' => 'ghi', 'Gohir.D12G145650' => 'ghi', 'Gohir.D12G145725' => 'ghi', 'Gohir.D12G194050' => 'ghi', 'Gohir.D13G091800' => 'ghi', 'Gorai.001G055900' => 'gra', 'Gorai.007G198400' => 'gra', 'Gorai.008G157000' => 'gra', 'Gorai.008G157100' => 'gra', 'Gorai.008G208700' => 'gra', 'Gorai.010G138700' => 'gra', 'GSVIVG01000977001' => 'vvi', 'GSVIVG01007708001' => 'vvi', 'GSVIVG01008587001' => 'vvi', 'GSVIVG01018849001' => 'vvi', 'GSVIVG01032432001' => 'vvi', 'HanXRQChr02g0034131' => 'han', 'HanXRQChr02g0035981' => 'han', 'HanXRQChr02g0035991' => 'han', 'HanXRQChr05g0155611' => 'han', 'HanXRQChr05g0155621' => 'han', 'HanXRQChr08g0236501' => 'han', 'HanXRQChr09g0261321' => 'han', 'HanXRQChr09g0272081' => 'han', 'HanXRQChr10g0310741' => 'han', 'HanXRQChr11g0325591' => 'han', 'HanXRQChr12g0385691' => 'han', 'HanXRQChr13g0387801' => 'han', 'HanXRQChr15g0463011' => 'han', 'Haze_03826' => 'cav', 'Haze_03827' => 'cav', 'Haze_07183' => 'cav', 'Haze_07537' => 'cav', 'Haze_07539' => 'cav', 'Haze_12461' => 'cav', 'Haze_16115' => 'cav', 'Haze_16808' => 'cav', 'Haze_18531' => 'cav', 'Hma1.2p1_0046F.1_g026700' => 'hma', 'Hma1.2p1_0046F.1_g026710' => 'hma', 'Hma1.2p1_0168F.1_g074340' => 'hma', 'Hma1.2p1_0266F.1_g107030' => 'hma', 'Hma1.2p1_0266F.1_g107060' => 'hma', 'Hma1.2p1_0275F.1_g110510' => 'hma', 'Hma1.2p1_0592F.1_g185490' => 'hma', 'Hma1.2p1_0592F.1_g185500' => 'hma', 'Hma1.2p1_0592F.1_g185510' => 'hma', 'Hma1.2p1_0592F.1_g185520' => 'hma', 'Hma1.2p1_0592F.1_g185530' => 'hma', 'Hma1.2p1_0818F.1_g223450' => 'hma', 'HPP92_009708' => 'vpl', 'HPP92_009793' => 'vpl', 'HPP92_009796' => 'vpl', 'HPP92_009797' => 'vpl', 'HPP92_014940' => 'vpl', 'HPP92_014988' => 'vpl', 'Hund02463' => 'sun', 'Hund02760' => 'sun', 'Hund05071' => 'sun', 'Hund10108' => 'sun', 'Hund11204' => 'sun', 'Hund14016' => 'sun', 'Hund16464' => 'sun', 'Lalb_Chr09g0333391' => 'lal', 'Lalb_Chr11g0070461' => 'lal', 'Lalb_Chr12g0201671' => 'lal', 'Lalb_Chr13g0297161' => 'lal', 'Lj1g0002823' => 'lja', 'Lj3C1074T6' => 'lonja', 'Lj4A212T28' => 'lonja', 'Lj4g0005516' => 'lja', 'Lj4g0013705' => 'lja', 'Lj4g0027865' => 'lja', 'Lj5C92G16' => 'lonja', 'Lj5C92T12' => 'lonja', 'Lj7C596T3' => 'lonja', 'Lj9A446G59' => 'lonja', 'Lj9A482G21' => 'lonja', 'Lsat_1_v5_gn_1_28261' => 'lsa', 'Lsat_1_v5_gn_1_28281' => 'lsa', 'Lsat_1_v5_gn_1_32721' => 'lsa', 'Lsat_1_v5_gn_4_151760' => 'lsa', 'Lsat_1_v5_gn_4_2120' => 'lsa', 'Lsat_1_v5_gn_4_75761' => 'lsa', 'Lsat_1_v5_gn_5_10920' => 'lsa', 'Manes.02G099900' => 'mes', 'Manes.11G096200' => 'mes', 'Manes.12G007200' => 'mes', 'Manes.14G048300' => 'mes', 'Manes.17G114700' => 'mes', 'Mapoly0002s0070' => 'mpo', 'Mapoly0029s0099' => 'mpo', 'MBI07_g24742_MAGBIO' => 'mbi', 'MBI10_g27988_MAGBIO' => 'mbi', 'MBI11_g13057_MAGBIO' => 'mbi', 'MD02G1137200' => 'mdo', 'MD06G1137200' => 'mdo', 'MD07G1122300' => 'mdo', 'MD09G1078200' => 'mdo', 'MD13G1123700' => 'mdo', 'MD14G1151900' => 'mdo', 'MD17G1030900' => 'mdo', 'MD17G1068200' => 'mdo', 'MD17G1068600' => 'mdo', 'Medtr3g077540' => 'mtr', 'Medtr4g105530' => 'mtr', 'Medtr8g076580' => 'mtr', 'Medtr8g076590' => 'mtr', 'Medtr8g096410' => 'mtr', 'MELO3C016411.2' => 'cme', 'MELO3C017780.2' => 'cme', 'MELO3C022560.2' => 'cme', 'MELO3C026187.2' => 'cme', 'MELO3C026286.2' => 'cme', 'MELO3C032854.2' => 'cme', 'Migut.H02495' => 'egut', 'Migut.I00561' => 'egut', 'Migut.K01015' => 'egut', 'Migut.K01016' => 'egut', 'Migut.L00743' => 'egut', 'Migut.L00744' => 'egut', 'Migut.L00746' => 'egut', 'Migut.L00798' => 'egut', 'Migut.L00799' => 'egut', 'Migut.N02096' => 'egut', 'MSTRG.11259' => 'ama', 'MSTRG.23142' => 'ama', 'MSTRG.2499' => 'ama', 'Nitab4.5_0000003g0730' => 'nta', 'Nitab4.5_0000137g0020' => 'nta', 'Nitab4.5_0000721g0210' => 'nta', 'Nitab4.5_0000723g0050' => 'nta', 'Nitab4.5_0000913g0070' => 'nta', 'Nitab4.5_0001332g0040' => 'nta', 'Nitab4.5_0001771g0050' => 'nta', 'Nitab4.5_0001918g0050' => 'nta', 'Nitab4.5_0002686g0030' => 'nta', 'Nitab4.5_0003156g0020' => 'nta', 'Nitab4.5_0003383g0040' => 'nta', 'Nitab4.5_0003918g0010' => 'nta', 'Nitab4.5_0006760g0010' => 'nta', 'Nn1g05981' => 'nnu', 'Nn1g06288' => 'nnu', 'Nn3g16371' => 'nnu', 'Nn3g16786' => 'nnu', 'Nn4g22232' => 'nnu', 'Oeu005144.1' => 'oeu', 'Oeu005145.1' => 'oeu', 'Oeu011348.1' => 'oeu', 'Oeu016415.1' => 'oeu', 'Oeu023501.1' => 'oeu', 'Oeu044473.1' => 'oeu', 'Oeu048892.2' => 'oeu', 'Os01g0549200' => 'osa', 'Os02g0469300' => 'osa', 'Os04g0311100' => 'osa', 'Os06g0474900' => 'osa', 'Os10g0181700' => 'osa', 'Os11g0454800' => 'osa', 'Peaxi162Scf00037g00714' => 'pax', 'Peaxi162Scf00084g01217' => 'pax', 'Peaxi162Scf00257g00217' => 'pax', 'Peaxi162Scf00516g00215' => 'pax', 'Peaxi162Scf00689g00123' => 'pax', 'PGR044G2719' => 'pgr', 'PGR083G1360' => 'pgr', 'PGR102G2849' => 'pgr', 'PGR119G2534' => 'pgr', 'PGSC0003DMG400003538' => 'stu', 'PGSC0003DMG400028138' => 'stu', 'PGSC0003DMG400031732' => 'stu', 'PGSC0003DMG400038165' => 'stu', 'Phvul.002G284600' => 'pvu', 'Phvul.003G258200' => 'pvu', 'Phvul.009G176500' => 'pvu', 'Potri.003G167201' => 'ptr', 'Potri.005G118400' => 'ptr', 'Potri.012G089000' => 'ptr', 'Potri.012G102800' => 'ptr', 'Potri.015G079400' => 'ptr', 'Potri.015G100900' => 'ptr', 'Pp3c14_9810' => 'ppa', 'Pp3c15_10450' => 'ppa', 'Pp3c20_19150' => 'ppa', 'Pp3c23_12740' => 'ppa', 'Pp3c23_6310' => 'ppa', 'Pp3c24_3720' => 'ppa', 'Pp3c27_2580' => 'ppa', 'Pp3c9_8990' => 'ppa', 'PRCOL_00002854' => 'pco', 'Prupe.1G221200' => 'ppe', 'Prupe.3G289000' => 'ppe', 'Prupe.5G147000' => 'ppe', 'Prupe.6G157300' => 'ppe', 'Prupe.7G163400' => 'ppe', 'Psat0s2177g0040' => 'psa', 'Psat3g174760' => 'psa', 'Psat3g192160' => 'psa', 'Psat4g058520' => 'psa', 'Psat4g096840' => 'psa', 'Psat7g037320' => 'psa', 'PSO017G1274' => 'pso', 'PSO017G5166' => 'pso', 'PSO063G4558' => 'pso', 'PSO170G4458' => 'pso', 'PSO170G5005' => 'pso', 'PSO210G6156' => 'pso', 'PSO210G6635' => 'pso', 'PSO210G7397' => 'pso', 'PSO210G7700' => 'pso', 'PSO455G0035' => 'pso', 'PSO455G0180' => 'pso', 'PSO478G4515' => 'pso', 'PSO832G1305' => 'pso', 'PSO832G3489' => 'pso', 'QL02p075247' => 'qlo', 'QL03p051148' => 'qlo', 'QL05p010313' => 'qlo', 'QL06p034627' => 'qlo', 'QL10p001889' => 'qlo', 'QL10p010846' => 'qlo', 'RcHm_v2.0_Chr1g0350621' => 'rch', 'RcHm_v2.0_Chr1g0350641' => 'rch', 'RcHm_v2.0_Chr2g0092891' => 'rch', 'RcHm_v2.0_Chr2g0100251' => 'rch', 'RcHm_v2.0_Chr2g0158661' => 'rch', 'RcHm_v2.0_Chr2g0172741' => 'rch', 'RcHm_v2.0_Chr4g0429571' => 'rch', 'RcHm_v2.0_Chr5g0042471' => 'rch', 'RcHm_v2.0_Chr7g0189451' => 'rch', 'Rhsim08G0052000' => 'rsi', 'Rhsim08G0174400' => 'rsi', 'Rhsim08G0193200' => 'rsi', 'Rhsim10G0214800' => 'rsi', 'Rhsim10G0214900' => 'rsi', 'Rhsim10G0215000' => 'rsi', 'Rhsim12G0022900' => 'rsi', 'Rhsim12G0177500' => 'rsi', 'Rhsim12G0177700' => 'rsi', 'Sabra03G0122600' => 'sbr', 'Sabra05G0097400' => 'sbr', 'Sabra12G0064100' => 'sbr', 'Sabra15G0121300' => 'sbr', 'SalBow2G0642' => 'sbo', 'SalBow5G2667' => 'sbo', 'SalBow5G4873' => 'sbo', 'SalBow8G2395' => 'sbo', 'Sc03g0003290' => 'sci', 'Sc10g0010130' => 'sci', 'Sc22g0003650' => 'sci', 'Sed0001603' => 'sed', 'Sed0004259' => 'sed', 'Sed0006789' => 'sed', 'Sed0011838' => 'sed', 'Sed0012964' => 'sed', 'Sed0016383' => 'sed', 'Sed0019010' => 'sed', 'Sed0020188' => 'sed', 'SEGI_04702' => 'sgi', 'SEGI_17231' => 'sgi', 'SEGI_18877' => 'sgi', 'SEGI_25196' => 'sgi', 'SEGI_25515' => 'sgi', 'SEGI_28445' => 'sgi', 'SEGI_37452' => 'sgi', 'SGA_v2.0_scaffold188G40336' => 'sas', 'SGA_v2.0_scaffold228G43247' => 'sas', 'SGA_v2.0_scaffold280G46853' => 'sas', 'SGA_v2.0_scaffold34G13808' => 'sas', 'SGA_v2.0_scaffold40G15576' => 'sas', 'SGA_v2.0_scaffold611G53188' => 'sas', 'SGA_v2.0_scaffold78G25461' => 'sas', 'SGA_v2.0_scaffold90G27888' => 'sas', 'SHI08601' => 'shi', 'SHI08606' => 'shi', 'SHI17117' => 'shi', 'SHI17119' => 'shi', 'SMO118G0201' => 'smo', 'SMO169G0247' => 'smo', 'SMO176G0006' => 'smo', 'SMO176G0015' => 'smo', 'SMO202G0006' => 'smo', 'SMO240G0050' => 'smo', 'SMO286G0009' => 'smo', 'SMO338G0033' => 'smo', 'SMO356G0533' => 'smo', 'SMO364G0382' => 'smo', 'SMO367G0166' => 'smo', 'SMO367G1098' => 'smo', 'Solyc01g009920.3' => 'sly', 'Solyc01g099300.3' => 'sly', 'Solyc02g084700.3' => 'sly', 'Solyc03g097520.3' => 'sly', 'Solyc06g071580.3' => 'sly', 'Solyc10g081760.3' => 'sly', 'Sopen01g005480' => 'spe', 'Sopen01g042850' => 'spe', 'Sopen02g029370' => 'spe', 'Sopen03g028280' => 'spe', 'Sopen06g027870' => 'spe', 'Sopen10g032270' => 'spe', 'Sp5g18180' => 'spa', 'Sp6g12880' => 'spa', 'Sp6g30850' => 'spa', 'Sp7g22960' => 'spa', 'Sp7g34010' => 'spa', 'SpUn1326_0010' => 'spa', 'TAR371G0242' => 'tar', 'TAR622G0638' => 'tar', 'TAR628G1548' => 'tar', 'TAR629G1079' => 'tar', 'TAR629G3413' => 'tar', 'THA.LOC104804249' => 'tha', 'THA.LOC104808315' => 'tha', 'THA.LOC104809238' => 'tha', 'THA.LOC104825484' => 'tha', 'Thecc.01G025500' => 'tca', 'Thecc.03G015800' => 'tca', 'Thecc.03G018000' => 'tca', 'Thecc.03G134800' => 'tca', 'Thecc.04G014700' => 'tca', 'Thhalv10006991m.g' => 'esa', 'Thhalv10012707m.g' => 'esa', 'Thhalv10015739m.g' => 'esa', 'Thhalv10024553m.g' => 'esa', 'Thhalv10024673m.g' => 'esa', 'Thhalv10029187m.g' => 'esa', 'TPR.G12971' => 'tpr', 'TPR.G29396' => 'tpr', 'TPR.G33376' => 'tpr', 'TPR.G35508' => 'tpr', 'TPR.G35516' => 'tpr', 'TPR.G37317' => 'tpr', 'TPR.G37389' => 'tpr', 'TPR.G37523' => 'tpr', 'TPR.G559' => 'tpr', 'TWI14G0070' => 'twi', 'TWI14G0729' => 'twi', 'TWI18G0596' => 'twi', 'TWI39G0780' => 'twi', 'TWI39G0850' => 'twi', 'TWI73G1052' => 'twi', 'unitig_52.g17485' => 'ugi', 'unitig_61.g26355' => 'ugi', 'vmacro01040' => 'vma', 'vmacro16731' => 'vma', 'vmacro18270' => 'vma', 'vmacro19142' => 'vma', 'vmacro19407' => 'vma', 'vmacro19408' => 'vma', 'vmacro21899' => 'vma', 'vmacro21900' => 'vma', 'vmacro21901' => 'vma', 'VMungo0251G0490' => 'vmu', 'VMungo0251G1748' => 'vmu', 'VMungo1309G0421' => 'vmu', 'Zm00001eb086500' => 'zma', 'Zm00001eb150680' => 'zma', 'Zm00001eb162330' => 'zma', 'Zm00001eb203130' => 'zma', 'Zm00001eb369480' => 'zma', 'Zm00001eb382340' => 'zma', 'Zm00001eb416360' => 'zma' ), 'gf_id' => 'HOM05D000902', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000902' ), 'data_identifier' => 'HOM05D000902', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000902', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '663', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02470' => 'bna', 'A01p16260' => 'bna', 'A02p01680' => 'bna', 'A03p16600' => 'bna', 'A03p55660' => 'bna', 'A03p64160' => 'bna', 'A03p64170' => 'bna', 'A08p31900' => 'bna', 'A09p59530' => 'bna', 'A10p08230' => 'bna', 'A10p25090' => 'bna', 'Aa31LG3G7100' => 'aar', 'Aa31LG3G7110' => 'aar', 'Aa31LG6G13160' => 'aar', 'Aa31LG7G10770' => 'aar', 'Aa31LG7G3830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2723' => 'aag', 'Actinidia08045' => 'ach', 'Actinidia08888' => 'ach', 'Actinidia18333' => 'ach', 'Actinidia19334' => 'ach', 'Actinidia25552' => 'ach', 'Actinidia26089' => 'ach', 'Actinidia30615' => 'ach', 'Actinidia30616' => 'ach', 'Actinidia33083' => 'ach', 'Actinidia35762' => 'ach', 'Ah.02g110620' => 'amhyb', 'Ah.11g046390' => 'amhyb', 'AL1G31670' => 'aly', 'AL6G23730' => 'aly', 'AL7G14740' => 'aly', 'AL7G14750' => 'aly', 'AL7G14760' => 'aly', 'AL7G28220' => 'aly', 'AL8G24940' => 'aly', 'Aqoxy3G01665' => 'aox', 'Aqoxy3G02853' => 'aox', 'Aqoxy5G01513' => 'aox', 'Aqoxy5G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8SKA4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ75LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKDA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0LJZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7REX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZP4YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWX7I5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2QKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS0L9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPCD8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q161UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC7XCF' => 'arhy', 'AT1G19100' => 'ath', 'AT4G24970' => 'ath', 'AT4G36270' => 'ath', 'AT4G36280' => 'ath', 'AT4G36290' => 'ath', 'AT5G13130' => 'ath', 'AT5G50780' => 'ath', 'ATR0582G266' => 'atr', 'ATR0661G195' => 'atr', 'ATR1152G031' => 'atr', 'Atru.chr11.2382' => 'acertr', 'Atru.chr12.2337' => 'acertr', 'Atru.chr3.744' => 'acertr', 'Atru.chr6.1870' => 'acertr', 'Atru.chr9.2515' => 'acertr', 'AUR62004120' => 'cqu', 'AUR62005667' => 'cqu', 'AUR62007634' => 'cqu', 'AUR62008186' => 'cqu', 'AUR62008187' => 'cqu', 'AUR62008188' => 'cqu', 'AUR62027954' => 'cqu', 'AUR62028766' => 'cqu', 'AUR62028767' => 'cqu', 'AUR62028768' => 'cqu', 'AUR62028886' => 'cqu', 'AUR62029563' => 'cqu', 'AUR62038832' => 'cqu', 'BcaB01g04149' => 'bca', 'BcaB03g12940' => 'bca', 'BcaB03g13090' => 'bca', 'BcaB03g14466' => 'bca', 'BcaB05g24035' => 'bca', 'BcaC01g06050' => 'bca', 'BcaC04g19148' => 'bca', 'BcaC04g20761' => 'bca', 'BcaC06g32845' => 'bca', 'BcaC07g41274' => 'bca', 'BcaC09g50827' => 'bca', 'BcaNung00741' => 'bca', 'BcaNung00742' => 'bca', 'BcaNung01859' => 'bca', 'BcaNung03985' => 'bca', 'BcaNung03989' => 'bca', 'BcaNung05661' => 'bca', 'BolC1t00257H' => 'bol', 'BolC1t01956H' => 'bol', 'BolC2t06534H' => 'bol', 'BolC3t14334H' => 'bol', 'BolC5t30451H' => 'bol', 'BolC7t45880H' => 'bol', 'BolC7t46586H' => 'bol', 'BolC8t49301H' => 'bol', 'BolC8t51837H' => 'bol', 'BolC9t56822H' => 'bol', 'BolC9t59235H' => 'bol', 'BraA01t00234Z' => 'bra', 'BraA01t01563Z' => 'bra', 'BraA02t05147Z' => 'bra', 'BraA03t10947Z' => 'bra', 'BraA03t14633Z' => 'bra', 'BraA08t35112Z' => 'bra', 'BraA09t41330Z' => 'bra', 'BraA10t44570Z' => 'bra', 'C01p02670' => 'bna', 'C01p20260' => 'bna', 'C02p05890' => 'bna', 'C03p19530' => 'bna', 'C05p17470' => 'bna', 'C07p53900' => 'bna', 'C07p61630' => 'bna', 'C08p16800' => 'bna', 'C08p42810' => 'bna', 'C09p39480' => 'bna', 'C09p63980' => 'bna', 'CAN.G1001.7' => 'can', 'CAN.G1034.55' => 'can', 'CAN.G143.7' => 'can', 'CAN.G3340.1' => 'can', 'CAN.G358.19' => 'can', 'CAN.G373.2' => 'can', 'CAN.G674.16' => 'can', 'CAN.G674.17' => 'can', 'CAN.G674.18' => 'can', 'CAN.G732.2' => 'can', 'CAN.G732.3' => 'can', 'CAN.G993.39' => 'can', 'CANSAT01G2052' => 'cansat', 'CANSAT80G0070' => 'cansat', 'CANSAT80G0483' => 'cansat', 'CANSAT80G0625' => 'cansat', 'CARHR019690' => 'chi', 'CARHR080280' => 'chi', 'CARHR152750' => 'chi', 'CARHR152760' => 'chi', 'CARHR152770' => 'chi', 'CARHR200340' => 'chi', 'CARHR232370' => 'chi', 'CARHR244670' => 'chi', 'CARHR244680' => 'chi', 'CARHR257520' => 'chi', 'Carub.0001s1872' => 'cru', 'Carub.0006s1130' => 'cru', 'Carub.0007s0396' => 'cru', 'Carub.0007s0397' => 'cru', 'Carub.0007s1608' => 'cru', 'Carub.0008s1068' => 'cru', 'Carub.0008s1077' => 'cru', 'Ca_16158_v3' => 'car', 'Ca_17571_v3' => 'car', 'Ca_21936_v3' => 'car', 'Ca_22350_v3' => 'car', 'CBR_g22445' => 'cbr', 'CBR_g26290' => 'cbr', 'Cc04_g09610' => 'ccan', 'Cc04_g12280' => 'ccan', 'Cc07_g10230' => 'ccan', 'CDE02G0093' => 'cde', 'CDE02G0701' => 'cde', 'CDE04G1050' => 'cde', 'CDE05G1833' => 'cde', 'CDE05G3058' => 'cde', 'CDE05G3380' => 'cde', 'CDE06G0536' => 'cde', 'Cfa006923' => 'cfa', 'Cfa009402' => 'cfa', 'Cfa018751' => 'cfa', 'Cfa019164' => 'cfa', 'Cfa022935' => 'cfa', 'Ciclev10019081m.g' => 'ccl', 'Ciclev10025076m.g' => 'ccl', 'Ciclev10030712m.g' => 'ccl', 'Ciclev10033760m.g' => 'ccl', 'CiPaw.05G105600' => 'cil', 'CiPaw.08G136700' => 'cil', 'CiPaw.11G003900' => 'cil', 'CiPaw.11G023700' => 'cil', 'CiPaw.12G003700' => 'cil', 'ClCG06G017100' => 'cla', 'ClCG06G018110' => 'cla', 'ClCG07G008800' => 'cla', 'ClCG07G015330' => 'cla', 'COL.COLO4_13698' => 'col', 'COL.COLO4_16659' => 'col', 'COL.COLO4_21986' => 'col', 'COL.COLO4_24049' => 'col', 'COL.COLO4_29061' => 'col', 'COL.COLO4_29075' => 'col', 'COL.COLO4_30094' => 'col', 'Cpa.g.c33689' => 'cpa', 'Cpa.g.sc108.39' => 'cpa', 'Cpa.g.sc108.41' => 'cpa', 'Cpa.g.sc1163.1' => 'cpa', 'Cpa.g.sc4.155' => 'cpa', 'Cpa.g.sc6.194' => 'cpa', 'CsaV3_1G000340' => 'csa', 'CsaV3_1G001400' => 'csa', 'CsaV3_4G002220' => 'csa', 'CsaV3_4G005370' => 'csa', 'CSS0007487' => 'camsi', 'CSS0008066' => 'camsi', 'CSS0009120' => 'camsi', 'CSS0015512' => 'camsi', 'CSS0022409' => 'camsi', 'CSS0025358' => 'camsi', 'CSS0044547' => 'camsi', 'DCAR_013057' => 'dca', 'DCAR_015058' => 'dca', 'DCAR_016027' => 'dca', 'DCAR_017327' => 'dca', 'DCAR_020743' => 'dca', 'DCAR_026157' => 'dca', 'DCAR_032339' => 'dca', 'DCAR_032340' => 'dca', 'Dinv11200' => 'din', 'Dinv11201' => 'din', 'Dinv20631' => 'din', 'Dinv23182' => 'din', 'Dinv33466' => 'din', 'Dinv33583' => 'din', 'Dinv38565' => 'din', 'Duzib068G0200' => 'dzi', 'Duzib147G0132' => 'dzi', 'Duzib147G0635' => 'dzi', 'Duzib205G1670' => 'dzi', 'Duzib251G0606' => 'dzi', 'ECA232G3336' => 'eca', 'ECA232G3763' => 'eca', 'ECA232G4845' => 'eca', 'ECA234G1607' => 'eca', 'ECA246G0932' => 'eca', 'ECA247G0781' => 'eca', 'ECA247G1932' => 'eca', 'ECA247G2079' => 'eca', 'ECA247G3338' => 'eca', 'ECA247G4115' => 'eca', 'EL10Ac3g06552' => 'bvu', 'EL10Ac5g10721' => 'bvu', 'EL10Ac5g10722' => 'bvu', 'EL10Ac5g10723' => 'bvu', 'EL10Ac5g11361' => 'bvu', 'EL10Ac6g13553' => 'bvu', 'EL10As8g23872' => 'bvu', 'Eucgr.B00250' => 'egr', 'Eucgr.B00251' => 'egr', 'Eucgr.B03533' => 'egr', 'Eucgr.I02381' => 'egr', 'Eucgr.K02700' => 'egr', 'FAN02G0174' => 'fan', 'FAN02G3146' => 'fan', 'FAN04G1672' => 'fan', 'FAN04G2273' => 'fan', 'FAN05G2791' => 'fan', 'FAN05G4035' => 'fan', 'FAN07G0834' => 'fan', 'FAN08G1198' => 'fan', 'FAN09G4182' => 'fan', 'FAN12G0496' => 'fan', 'FAN13G1027' => 'fan', 'FAN13G2951' => 'fan', 'FAN14G0705' => 'fan', 'FAN14G0720' => 'fan', 'FAN17G0201' => 'fan', 'FAN17G2665' => 'fan', 'FAN18G1456' => 'fan', 'FAN18G1525' => 'fan', 'FAN18G3500' => 'fan', 'FAN28G2670' => 'fan', 'FvH4_1g12391' => 'fve', 'FvH4_4g23220' => 'fve', 'FvH4_5g08810' => 'fve', 'FvH4_5g28960' => 'fve', 'FvH4_6g42820' => 'fve', 'FvH4_6g51110' => 'fve', 'Glyma.02G051802' => 'gma', 'Glyma.04G185300' => 'gma', 'Glyma.05G202900' => 'gma', 'Glyma.08G010300' => 'gma', 'Glyma.16G131900' => 'gma', 'Glyma.17G087900' => 'gma', 'Gohir.A07G048600' => 'ghi', 'Gohir.A11G179000' => 'ghi', 'Gohir.A12G140900' => 'ghi', 'Gohir.A12G140950' => 'ghi', 'Gohir.A12G191700' => 'ghi', 'Gohir.A13G086300' => 'ghi', 'Gohir.D07G052900' => 'ghi', 'Gohir.D11G186600' => 'ghi', 'Gohir.D12G145575' => 'ghi', 'Gohir.D12G145650' => 'ghi', 'Gohir.D12G145725' => 'ghi', 'Gohir.D12G194050' => 'ghi', 'Gohir.D13G091800' => 'ghi', 'Gorai.001G055900' => 'gra', 'Gorai.007G198400' => 'gra', 'Gorai.008G157000' => 'gra', 'Gorai.008G157100' => 'gra', 'Gorai.008G208700' => 'gra', 'Gorai.010G138700' => 'gra', 'GSVIVG01000977001' => 'vvi', 'GSVIVG01007708001' => 'vvi', 'GSVIVG01008587001' => 'vvi', 'GSVIVG01018849001' => 'vvi', 'GSVIVG01032432001' => 'vvi', 'HanXRQChr02g0034131' => 'han', 'HanXRQChr02g0035981' => 'han', 'HanXRQChr02g0035991' => 'han', 'HanXRQChr05g0155611' => 'han', 'HanXRQChr05g0155621' => 'han', 'HanXRQChr08g0236501' => 'han', 'HanXRQChr09g0261321' => 'han', 'HanXRQChr09g0272081' => 'han', 'HanXRQChr10g0310741' => 'han', 'HanXRQChr11g0325591' => 'han', 'HanXRQChr12g0385691' => 'han', 'HanXRQChr13g0387801' => 'han', 'HanXRQChr15g0463011' => 'han', 'Haze_03826' => 'cav', 'Haze_03827' => 'cav', 'Haze_07183' => 'cav', 'Haze_07537' => 'cav', 'Haze_07539' => 'cav', 'Haze_12461' => 'cav', 'Haze_16115' => 'cav', 'Haze_16808' => 'cav', 'Haze_18531' => 'cav', 'Hma1.2p1_0046F.1_g026700' => 'hma', 'Hma1.2p1_0046F.1_g026710' => 'hma', 'Hma1.2p1_0168F.1_g074340' => 'hma', 'Hma1.2p1_0266F.1_g107030' => 'hma', 'Hma1.2p1_0266F.1_g107060' => 'hma', 'Hma1.2p1_0275F.1_g110510' => 'hma', 'Hma1.2p1_0592F.1_g185490' => 'hma', 'Hma1.2p1_0592F.1_g185500' => 'hma', 'Hma1.2p1_0592F.1_g185510' => 'hma', 'Hma1.2p1_0592F.1_g185520' => 'hma', 'Hma1.2p1_0592F.1_g185530' => 'hma', 'Hma1.2p1_0818F.1_g223450' => 'hma', 'HPP92_009708' => 'vpl', 'HPP92_009793' => 'vpl', 'HPP92_009796' => 'vpl', 'HPP92_009797' => 'vpl', 'HPP92_014940' => 'vpl', 'HPP92_014988' => 'vpl', 'Hund02463' => 'sun', 'Hund02760' => 'sun', 'Hund05071' => 'sun', 'Hund10108' => 'sun', 'Hund11204' => 'sun', 'Hund14016' => 'sun', 'Hund16464' => 'sun', 'Lalb_Chr09g0333391' => 'lal', 'Lalb_Chr11g0070461' => 'lal', 'Lalb_Chr12g0201671' => 'lal', 'Lalb_Chr13g0297161' => 'lal', 'Lj1g0002823' => 'lja', 'Lj3C1074T6' => 'lonja', 'Lj4A212T28' => 'lonja', 'Lj4g0005516' => 'lja', 'Lj4g0013705' => 'lja', 'Lj4g0027865' => 'lja', 'Lj5C92G16' => 'lonja', 'Lj5C92T12' => 'lonja', 'Lj7C596T3' => 'lonja', 'Lj9A446G59' => 'lonja', 'Lj9A482G21' => 'lonja', 'Lsat_1_v5_gn_1_28261' => 'lsa', 'Lsat_1_v5_gn_1_28281' => 'lsa', 'Lsat_1_v5_gn_1_32721' => 'lsa', 'Lsat_1_v5_gn_4_151760' => 'lsa', 'Lsat_1_v5_gn_4_2120' => 'lsa', 'Lsat_1_v5_gn_4_75761' => 'lsa', 'Lsat_1_v5_gn_5_10920' => 'lsa', 'Manes.02G099900' => 'mes', 'Manes.11G096200' => 'mes', 'Manes.12G007200' => 'mes', 'Manes.14G048300' => 'mes', 'Manes.17G114700' => 'mes', 'Mapoly0002s0070' => 'mpo', 'Mapoly0029s0099' => 'mpo', 'MBI07_g24742_MAGBIO' => 'mbi', 'MBI10_g27988_MAGBIO' => 'mbi', 'MBI11_g13057_MAGBIO' => 'mbi', 'MD02G1137200' => 'mdo', 'MD06G1137200' => 'mdo', 'MD07G1122300' => 'mdo', 'MD09G1078200' => 'mdo', 'MD13G1123700' => 'mdo', 'MD14G1151900' => 'mdo', 'MD17G1030900' => 'mdo', 'MD17G1068200' => 'mdo', 'MD17G1068600' => 'mdo', 'Medtr3g077540' => 'mtr', 'Medtr4g105530' => 'mtr', 'Medtr8g076580' => 'mtr', 'Medtr8g076590' => 'mtr', 'Medtr8g096410' => 'mtr', 'MELO3C016411.2' => 'cme', 'MELO3C017780.2' => 'cme', 'MELO3C022560.2' => 'cme', 'MELO3C026187.2' => 'cme', 'MELO3C026286.2' => 'cme', 'MELO3C032854.2' => 'cme', 'Migut.H02495' => 'egut', 'Migut.I00561' => 'egut', 'Migut.K01015' => 'egut', 'Migut.K01016' => 'egut', 'Migut.L00743' => 'egut', 'Migut.L00744' => 'egut', 'Migut.L00746' => 'egut', 'Migut.L00798' => 'egut', 'Migut.L00799' => 'egut', 'Migut.N02096' => 'egut', 'MSTRG.11259' => 'ama', 'MSTRG.23142' => 'ama', 'MSTRG.2499' => 'ama', 'Nitab4.5_0000003g0730' => 'nta', 'Nitab4.5_0000137g0020' => 'nta', 'Nitab4.5_0000721g0210' => 'nta', 'Nitab4.5_0000723g0050' => 'nta', 'Nitab4.5_0000913g0070' => 'nta', 'Nitab4.5_0001332g0040' => 'nta', 'Nitab4.5_0001771g0050' => 'nta', 'Nitab4.5_0001918g0050' => 'nta', 'Nitab4.5_0002686g0030' => 'nta', 'Nitab4.5_0003156g0020' => 'nta', 'Nitab4.5_0003383g0040' => 'nta', 'Nitab4.5_0003918g0010' => 'nta', 'Nitab4.5_0006760g0010' => 'nta', 'Nn1g05981' => 'nnu', 'Nn1g06288' => 'nnu', 'Nn3g16371' => 'nnu', 'Nn3g16786' => 'nnu', 'Nn4g22232' => 'nnu', 'Oeu005144.1' => 'oeu', 'Oeu005145.1' => 'oeu', 'Oeu011348.1' => 'oeu', 'Oeu016415.1' => 'oeu', 'Oeu023501.1' => 'oeu', 'Oeu044473.1' => 'oeu', 'Oeu048892.2' => 'oeu', 'Os01g0549200' => 'osa', 'Os02g0469300' => 'osa', 'Os04g0311100' => 'osa', 'Os06g0474900' => 'osa', 'Os10g0181700' => 'osa', 'Os11g0454800' => 'osa', 'Peaxi162Scf00037g00714' => 'pax', 'Peaxi162Scf00084g01217' => 'pax', 'Peaxi162Scf00257g00217' => 'pax', 'Peaxi162Scf00516g00215' => 'pax', 'Peaxi162Scf00689g00123' => 'pax', 'PGR044G2719' => 'pgr', 'PGR083G1360' => 'pgr', 'PGR102G2849' => 'pgr', 'PGR119G2534' => 'pgr', 'PGSC0003DMG400003538' => 'stu', 'PGSC0003DMG400028138' => 'stu', 'PGSC0003DMG400031732' => 'stu', 'PGSC0003DMG400038165' => 'stu', 'Phvul.002G284600' => 'pvu', 'Phvul.003G258200' => 'pvu', 'Phvul.009G176500' => 'pvu', 'Potri.003G167201' => 'ptr', 'Potri.005G118400' => 'ptr', 'Potri.012G089000' => 'ptr', 'Potri.012G102800' => 'ptr', 'Potri.015G079400' => 'ptr', 'Potri.015G100900' => 'ptr', 'Pp3c14_9810' => 'ppa', 'Pp3c15_10450' => 'ppa', 'Pp3c20_19150' => 'ppa', 'Pp3c23_12740' => 'ppa', 'Pp3c23_6310' => 'ppa', 'Pp3c24_3720' => 'ppa', 'Pp3c27_2580' => 'ppa', 'Pp3c9_8990' => 'ppa', 'PRCOL_00002854' => 'pco', 'Prupe.1G221200' => 'ppe', 'Prupe.3G289000' => 'ppe', 'Prupe.5G147000' => 'ppe', 'Prupe.6G157300' => 'ppe', 'Prupe.7G163400' => 'ppe', 'Psat0s2177g0040' => 'psa', 'Psat3g174760' => 'psa', 'Psat3g192160' => 'psa', 'Psat4g058520' => 'psa', 'Psat4g096840' => 'psa', 'Psat7g037320' => 'psa', 'PSO017G1274' => 'pso', 'PSO017G5166' => 'pso', 'PSO063G4558' => 'pso', 'PSO170G4458' => 'pso', 'PSO170G5005' => 'pso', 'PSO210G6156' => 'pso', 'PSO210G6635' => 'pso', 'PSO210G7397' => 'pso', 'PSO210G7700' => 'pso', 'PSO455G0035' => 'pso', 'PSO455G0180' => 'pso', 'PSO478G4515' => 'pso', 'PSO832G1305' => 'pso', 'PSO832G3489' => 'pso', 'QL02p075247' => 'qlo', 'QL03p051148' => 'qlo', 'QL05p010313' => 'qlo', 'QL06p034627' => 'qlo', 'QL10p001889' => 'qlo', 'QL10p010846' => 'qlo', 'RcHm_v2.0_Chr1g0350621' => 'rch', 'RcHm_v2.0_Chr1g0350641' => 'rch', 'RcHm_v2.0_Chr2g0092891' => 'rch', 'RcHm_v2.0_Chr2g0100251' => 'rch', 'RcHm_v2.0_Chr2g0158661' => 'rch', 'RcHm_v2.0_Chr2g0172741' => 'rch', 'RcHm_v2.0_Chr4g0429571' => 'rch', 'RcHm_v2.0_Chr5g0042471' => 'rch', 'RcHm_v2.0_Chr7g0189451' => 'rch', 'Rhsim08G0052000' => 'rsi', 'Rhsim08G0174400' => 'rsi', 'Rhsim08G0193200' => 'rsi', 'Rhsim10G0214800' => 'rsi', 'Rhsim10G0214900' => 'rsi', 'Rhsim10G0215000' => 'rsi', 'Rhsim12G0022900' => 'rsi', 'Rhsim12G0177500' => 'rsi', 'Rhsim12G0177700' => 'rsi', 'Sabra03G0122600' => 'sbr', 'Sabra05G0097400' => 'sbr', 'Sabra12G0064100' => 'sbr', 'Sabra15G0121300' => 'sbr', 'SalBow2G0642' => 'sbo', 'SalBow5G2667' => 'sbo', 'SalBow5G4873' => 'sbo', 'SalBow8G2395' => 'sbo', 'Sc03g0003290' => 'sci', 'Sc10g0010130' => 'sci', 'Sc22g0003650' => 'sci', 'Sed0001603' => 'sed', 'Sed0004259' => 'sed', 'Sed0006789' => 'sed', 'Sed0011838' => 'sed', 'Sed0012964' => 'sed', 'Sed0016383' => 'sed', 'Sed0019010' => 'sed', 'Sed0020188' => 'sed', 'SEGI_04702' => 'sgi', 'SEGI_17231' => 'sgi', 'SEGI_18877' => 'sgi', 'SEGI_25196' => 'sgi', 'SEGI_25515' => 'sgi', 'SEGI_28445' => 'sgi', 'SEGI_37452' => 'sgi', 'SGA_v2.0_scaffold188G40336' => 'sas', 'SGA_v2.0_scaffold228G43247' => 'sas', 'SGA_v2.0_scaffold280G46853' => 'sas', 'SGA_v2.0_scaffold34G13808' => 'sas', 'SGA_v2.0_scaffold40G15576' => 'sas', 'SGA_v2.0_scaffold611G53188' => 'sas', 'SGA_v2.0_scaffold78G25461' => 'sas', 'SGA_v2.0_scaffold90G27888' => 'sas', 'SHI08601' => 'shi', 'SHI08606' => 'shi', 'SHI17117' => 'shi', 'SHI17119' => 'shi', 'SMO118G0201' => 'smo', 'SMO169G0247' => 'smo', 'SMO176G0006' => 'smo', 'SMO176G0015' => 'smo', 'SMO202G0006' => 'smo', 'SMO240G0050' => 'smo', 'SMO286G0009' => 'smo', 'SMO338G0033' => 'smo', 'SMO356G0533' => 'smo', 'SMO364G0382' => 'smo', 'SMO367G0166' => 'smo', 'SMO367G1098' => 'smo', 'Solyc01g009920.3' => 'sly', 'Solyc01g099300.3' => 'sly', 'Solyc02g084700.3' => 'sly', 'Solyc03g097520.3' => 'sly', 'Solyc06g071580.3' => 'sly', 'Solyc10g081760.3' => 'sly', 'Sopen01g005480' => 'spe', 'Sopen01g042850' => 'spe', 'Sopen02g029370' => 'spe', 'Sopen03g028280' => 'spe', 'Sopen06g027870' => 'spe', 'Sopen10g032270' => 'spe', 'Sp5g18180' => 'spa', 'Sp6g12880' => 'spa', 'Sp6g30850' => 'spa', 'Sp7g22960' => 'spa', 'Sp7g34010' => 'spa', 'SpUn1326_0010' => 'spa', 'TAR371G0242' => 'tar', 'TAR622G0638' => 'tar', 'TAR628G1548' => 'tar', 'TAR629G1079' => 'tar', 'TAR629G3413' => 'tar', 'THA.LOC104804249' => 'tha', 'THA.LOC104808315' => 'tha', 'THA.LOC104809238' => 'tha', 'THA.LOC104825484' => 'tha', 'Thecc.01G025500' => 'tca', 'Thecc.03G015800' => 'tca', 'Thecc.03G018000' => 'tca', 'Thecc.03G134800' => 'tca', 'Thecc.04G014700' => 'tca', 'Thhalv10006991m.g' => 'esa', 'Thhalv10012707m.g' => 'esa', 'Thhalv10015739m.g' => 'esa', 'Thhalv10024553m.g' => 'esa', 'Thhalv10024673m.g' => 'esa', 'Thhalv10029187m.g' => 'esa', 'TPR.G12971' => 'tpr', 'TPR.G29396' => 'tpr', 'TPR.G33376' => 'tpr', 'TPR.G35508' => 'tpr', 'TPR.G35516' => 'tpr', 'TPR.G37317' => 'tpr', 'TPR.G37389' => 'tpr', 'TPR.G37523' => 'tpr', 'TPR.G559' => 'tpr', 'TWI14G0070' => 'twi', 'TWI14G0729' => 'twi', 'TWI18G0596' => 'twi', 'TWI39G0780' => 'twi', 'TWI39G0850' => 'twi', 'TWI73G1052' => 'twi', 'unitig_52.g17485' => 'ugi', 'unitig_61.g26355' => 'ugi', 'vmacro01040' => 'vma', 'vmacro16731' => 'vma', 'vmacro18270' => 'vma', 'vmacro19142' => 'vma', 'vmacro19407' => 'vma', 'vmacro19408' => 'vma', 'vmacro21899' => 'vma', 'vmacro21900' => 'vma', 'vmacro21901' => 'vma', 'VMungo0251G0490' => 'vmu', 'VMungo0251G1748' => 'vmu', 'VMungo1309G0421' => 'vmu', 'Zm00001eb086500' => 'zma', 'Zm00001eb150680' => 'zma', 'Zm00001eb162330' => 'zma', 'Zm00001eb203130' => 'zma', 'Zm00001eb369480' => 'zma', 'Zm00001eb382340' => 'zma', 'Zm00001eb416360' => 'zma' ) $gf_id = 'HOM05D000902' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000902' ) $data_identifier = 'HOM05D000902' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 13, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 10, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 6, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 9, 'hma' => (int) 12, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 4, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 6, 'ppa' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 6, 'rch' => (int) 9, 'rsi' => (int) 9, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 12, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 3, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416360' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000902', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '663', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02470' => 'bna', 'A01p16260' => 'bna', 'A02p01680' => 'bna', 'A03p16600' => 'bna', 'A03p55660' => 'bna', 'A03p64160' => 'bna', 'A03p64170' => 'bna', 'A08p31900' => 'bna', 'A09p59530' => 'bna', 'A10p08230' => 'bna', 'A10p25090' => 'bna', 'Aa31LG3G7100' => 'aar', 'Aa31LG3G7110' => 'aar', 'Aa31LG6G13160' => 'aar', 'Aa31LG7G10770' => 'aar', 'Aa31LG7G3830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2723' => 'aag', 'Actinidia08045' => 'ach', 'Actinidia08888' => 'ach', 'Actinidia18333' => 'ach', 'Actinidia19334' => 'ach', 'Actinidia25552' => 'ach', 'Actinidia26089' => 'ach', 'Actinidia30615' => 'ach', 'Actinidia30616' => 'ach', 'Actinidia33083' => 'ach', 'Actinidia35762' => 'ach', 'Ah.02g110620' => 'amhyb', 'Ah.11g046390' => 'amhyb', 'AL1G31670' => 'aly', 'AL6G23730' => 'aly', 'AL7G14740' => 'aly', 'AL7G14750' => 'aly', 'AL7G14760' => 'aly', 'AL7G28220' => 'aly', 'AL8G24940' => 'aly', 'Aqoxy3G01665' => 'aox', 'Aqoxy3G02853' => 'aox', 'Aqoxy5G01513' => 'aox', 'Aqoxy5G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8SKA4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ75LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKDA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0LJZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7REX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZP4YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWX7I5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2QKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS0L9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPCD8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q161UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC7XCF' => 'arhy', 'AT1G19100' => 'ath', 'AT4G24970' => 'ath', 'AT4G36270' => 'ath', 'AT4G36280' => 'ath', 'AT4G36290' => 'ath', 'AT5G13130' => 'ath', 'AT5G50780' => 'ath', 'ATR0582G266' => 'atr', 'ATR0661G195' => 'atr', 'ATR1152G031' => 'atr', 'Atru.chr11.2382' => 'acertr', 'Atru.chr12.2337' => 'acertr', 'Atru.chr3.744' => 'acertr', 'Atru.chr6.1870' => 'acertr', 'Atru.chr9.2515' => 'acertr', 'AUR62004120' => 'cqu', 'AUR62005667' => 'cqu', 'AUR62007634' => 'cqu', 'AUR62008186' => 'cqu', 'AUR62008187' => 'cqu', 'AUR62008188' => 'cqu', 'AUR62027954' => 'cqu', 'AUR62028766' => 'cqu', 'AUR62028767' => 'cqu', 'AUR62028768' => 'cqu', 'AUR62028886' => 'cqu', 'AUR62029563' => 'cqu', 'AUR62038832' => 'cqu', 'BcaB01g04149' => 'bca', 'BcaB03g12940' => 'bca', 'BcaB03g13090' => 'bca', 'BcaB03g14466' => 'bca', 'BcaB05g24035' => 'bca', 'BcaC01g06050' => 'bca', 'BcaC04g19148' => 'bca', 'BcaC04g20761' => 'bca', 'BcaC06g32845' => 'bca', 'BcaC07g41274' => 'bca', 'BcaC09g50827' => 'bca', 'BcaNung00741' => 'bca', 'BcaNung00742' => 'bca', 'BcaNung01859' => 'bca', 'BcaNung03985' => 'bca', 'BcaNung03989' => 'bca', 'BcaNung05661' => 'bca', 'BolC1t00257H' => 'bol', 'BolC1t01956H' => 'bol', 'BolC2t06534H' => 'bol', 'BolC3t14334H' => 'bol', 'BolC5t30451H' => 'bol', 'BolC7t45880H' => 'bol', 'BolC7t46586H' => 'bol', 'BolC8t49301H' => 'bol', 'BolC8t51837H' => 'bol', 'BolC9t56822H' => 'bol', 'BolC9t59235H' => 'bol', 'BraA01t00234Z' => 'bra', 'BraA01t01563Z' => 'bra', 'BraA02t05147Z' => 'bra', 'BraA03t10947Z' => 'bra', 'BraA03t14633Z' => 'bra', 'BraA08t35112Z' => 'bra', 'BraA09t41330Z' => 'bra', 'BraA10t44570Z' => 'bra', 'C01p02670' => 'bna', 'C01p20260' => 'bna', 'C02p05890' => 'bna', 'C03p19530' => 'bna', 'C05p17470' => 'bna', 'C07p53900' => 'bna', 'C07p61630' => 'bna', 'C08p16800' => 'bna', 'C08p42810' => 'bna', 'C09p39480' => 'bna', 'C09p63980' => 'bna', 'CAN.G1001.7' => 'can', 'CAN.G1034.55' => 'can', 'CAN.G143.7' => 'can', 'CAN.G3340.1' => 'can', 'CAN.G358.19' => 'can', 'CAN.G373.2' => 'can', 'CAN.G674.16' => 'can', 'CAN.G674.17' => 'can', 'CAN.G674.18' => 'can', 'CAN.G732.2' => 'can', 'CAN.G732.3' => 'can', 'CAN.G993.39' => 'can', 'CANSAT01G2052' => 'cansat', 'CANSAT80G0070' => 'cansat', 'CANSAT80G0483' => 'cansat', 'CANSAT80G0625' => 'cansat', 'CARHR019690' => 'chi', 'CARHR080280' => 'chi', 'CARHR152750' => 'chi', 'CARHR152760' => 'chi', 'CARHR152770' => 'chi', 'CARHR200340' => 'chi', 'CARHR232370' => 'chi', 'CARHR244670' => 'chi', 'CARHR244680' => 'chi', 'CARHR257520' => 'chi', 'Carub.0001s1872' => 'cru', 'Carub.0006s1130' => 'cru', 'Carub.0007s0396' => 'cru', 'Carub.0007s0397' => 'cru', 'Carub.0007s1608' => 'cru', 'Carub.0008s1068' => 'cru', 'Carub.0008s1077' => 'cru', 'Ca_16158_v3' => 'car', 'Ca_17571_v3' => 'car', 'Ca_21936_v3' => 'car', 'Ca_22350_v3' => 'car', 'CBR_g22445' => 'cbr', 'CBR_g26290' => 'cbr', 'Cc04_g09610' => 'ccan', 'Cc04_g12280' => 'ccan', 'Cc07_g10230' => 'ccan', 'CDE02G0093' => 'cde', 'CDE02G0701' => 'cde', 'CDE04G1050' => 'cde', 'CDE05G1833' => 'cde', 'CDE05G3058' => 'cde', 'CDE05G3380' => 'cde', 'CDE06G0536' => 'cde', 'Cfa006923' => 'cfa', 'Cfa009402' => 'cfa', 'Cfa018751' => 'cfa', 'Cfa019164' => 'cfa', 'Cfa022935' => 'cfa', 'Ciclev10019081m.g' => 'ccl', 'Ciclev10025076m.g' => 'ccl', 'Ciclev10030712m.g' => 'ccl', 'Ciclev10033760m.g' => 'ccl', 'CiPaw.05G105600' => 'cil', 'CiPaw.08G136700' => 'cil', 'CiPaw.11G003900' => 'cil', 'CiPaw.11G023700' => 'cil', 'CiPaw.12G003700' => 'cil', 'ClCG06G017100' => 'cla', 'ClCG06G018110' => 'cla', 'ClCG07G008800' => 'cla', 'ClCG07G015330' => 'cla', 'COL.COLO4_13698' => 'col', 'COL.COLO4_16659' => 'col', 'COL.COLO4_21986' => 'col', 'COL.COLO4_24049' => 'col', 'COL.COLO4_29061' => 'col', 'COL.COLO4_29075' => 'col', 'COL.COLO4_30094' => 'col', 'Cpa.g.c33689' => 'cpa', 'Cpa.g.sc108.39' => 'cpa', 'Cpa.g.sc108.41' => 'cpa', 'Cpa.g.sc1163.1' => 'cpa', 'Cpa.g.sc4.155' => 'cpa', 'Cpa.g.sc6.194' => 'cpa', 'CsaV3_1G000340' => 'csa', 'CsaV3_1G001400' => 'csa', 'CsaV3_4G002220' => 'csa', 'CsaV3_4G005370' => 'csa', 'CSS0007487' => 'camsi', 'CSS0008066' => 'camsi', 'CSS0009120' => 'camsi', 'CSS0015512' => 'camsi', 'CSS0022409' => 'camsi', 'CSS0025358' => 'camsi', 'CSS0044547' => 'camsi', 'DCAR_013057' => 'dca', 'DCAR_015058' => 'dca', 'DCAR_016027' => 'dca', 'DCAR_017327' => 'dca', 'DCAR_020743' => 'dca', 'DCAR_026157' => 'dca', 'DCAR_032339' => 'dca', 'DCAR_032340' => 'dca', 'Dinv11200' => 'din', 'Dinv11201' => 'din', 'Dinv20631' => 'din', 'Dinv23182' => 'din', 'Dinv33466' => 'din', 'Dinv33583' => 'din', 'Dinv38565' => 'din', 'Duzib068G0200' => 'dzi', 'Duzib147G0132' => 'dzi', 'Duzib147G0635' => 'dzi', 'Duzib205G1670' => 'dzi', 'Duzib251G0606' => 'dzi', 'ECA232G3336' => 'eca', 'ECA232G3763' => 'eca', 'ECA232G4845' => 'eca', 'ECA234G1607' => 'eca', 'ECA246G0932' => 'eca', 'ECA247G0781' => 'eca', 'ECA247G1932' => 'eca', 'ECA247G2079' => 'eca', 'ECA247G3338' => 'eca', 'ECA247G4115' => 'eca', 'EL10Ac3g06552' => 'bvu', 'EL10Ac5g10721' => 'bvu', 'EL10Ac5g10722' => 'bvu', 'EL10Ac5g10723' => 'bvu', 'EL10Ac5g11361' => 'bvu', 'EL10Ac6g13553' => 'bvu', 'EL10As8g23872' => 'bvu', 'Eucgr.B00250' => 'egr', 'Eucgr.B00251' => 'egr', 'Eucgr.B03533' => 'egr', 'Eucgr.I02381' => 'egr', 'Eucgr.K02700' => 'egr', 'FAN02G0174' => 'fan', 'FAN02G3146' => 'fan', 'FAN04G1672' => 'fan', 'FAN04G2273' => 'fan', 'FAN05G2791' => 'fan', 'FAN05G4035' => 'fan', 'FAN07G0834' => 'fan', 'FAN08G1198' => 'fan', 'FAN09G4182' => 'fan', 'FAN12G0496' => 'fan', 'FAN13G1027' => 'fan', 'FAN13G2951' => 'fan', 'FAN14G0705' => 'fan', 'FAN14G0720' => 'fan', 'FAN17G0201' => 'fan', 'FAN17G2665' => 'fan', 'FAN18G1456' => 'fan', 'FAN18G1525' => 'fan', 'FAN18G3500' => 'fan', 'FAN28G2670' => 'fan', 'FvH4_1g12391' => 'fve', 'FvH4_4g23220' => 'fve', 'FvH4_5g08810' => 'fve', 'FvH4_5g28960' => 'fve', 'FvH4_6g42820' => 'fve', 'FvH4_6g51110' => 'fve', 'Glyma.02G051802' => 'gma', 'Glyma.04G185300' => 'gma', 'Glyma.05G202900' => 'gma', 'Glyma.08G010300' => 'gma', 'Glyma.16G131900' => 'gma', 'Glyma.17G087900' => 'gma', 'Gohir.A07G048600' => 'ghi', 'Gohir.A11G179000' => 'ghi', 'Gohir.A12G140900' => 'ghi', 'Gohir.A12G140950' => 'ghi', 'Gohir.A12G191700' => 'ghi', 'Gohir.A13G086300' => 'ghi', 'Gohir.D07G052900' => 'ghi', 'Gohir.D11G186600' => 'ghi', 'Gohir.D12G145575' => 'ghi', 'Gohir.D12G145650' => 'ghi', 'Gohir.D12G145725' => 'ghi', 'Gohir.D12G194050' => 'ghi', 'Gohir.D13G091800' => 'ghi', 'Gorai.001G055900' => 'gra', 'Gorai.007G198400' => 'gra', 'Gorai.008G157000' => 'gra', 'Gorai.008G157100' => 'gra', 'Gorai.008G208700' => 'gra', 'Gorai.010G138700' => 'gra', 'GSVIVG01000977001' => 'vvi', 'GSVIVG01007708001' => 'vvi', 'GSVIVG01008587001' => 'vvi', 'GSVIVG01018849001' => 'vvi', 'GSVIVG01032432001' => 'vvi', 'HanXRQChr02g0034131' => 'han', 'HanXRQChr02g0035981' => 'han', 'HanXRQChr02g0035991' => 'han', 'HanXRQChr05g0155611' => 'han', 'HanXRQChr05g0155621' => 'han', 'HanXRQChr08g0236501' => 'han', 'HanXRQChr09g0261321' => 'han', 'HanXRQChr09g0272081' => 'han', 'HanXRQChr10g0310741' => 'han', 'HanXRQChr11g0325591' => 'han', 'HanXRQChr12g0385691' => 'han', 'HanXRQChr13g0387801' => 'han', 'HanXRQChr15g0463011' => 'han', 'Haze_03826' => 'cav', 'Haze_03827' => 'cav', 'Haze_07183' => 'cav', 'Haze_07537' => 'cav', 'Haze_07539' => 'cav', 'Haze_12461' => 'cav', 'Haze_16115' => 'cav', 'Haze_16808' => 'cav', 'Haze_18531' => 'cav', 'Hma1.2p1_0046F.1_g026700' => 'hma', 'Hma1.2p1_0046F.1_g026710' => 'hma', 'Hma1.2p1_0168F.1_g074340' => 'hma', 'Hma1.2p1_0266F.1_g107030' => 'hma', 'Hma1.2p1_0266F.1_g107060' => 'hma', 'Hma1.2p1_0275F.1_g110510' => 'hma', 'Hma1.2p1_0592F.1_g185490' => 'hma', 'Hma1.2p1_0592F.1_g185500' => 'hma', 'Hma1.2p1_0592F.1_g185510' => 'hma', 'Hma1.2p1_0592F.1_g185520' => 'hma', 'Hma1.2p1_0592F.1_g185530' => 'hma', 'Hma1.2p1_0818F.1_g223450' => 'hma', 'HPP92_009708' => 'vpl', 'HPP92_009793' => 'vpl', 'HPP92_009796' => 'vpl', 'HPP92_009797' => 'vpl', 'HPP92_014940' => 'vpl', 'HPP92_014988' => 'vpl', 'Hund02463' => 'sun', 'Hund02760' => 'sun', 'Hund05071' => 'sun', 'Hund10108' => 'sun', 'Hund11204' => 'sun', 'Hund14016' => 'sun', 'Hund16464' => 'sun', 'Lalb_Chr09g0333391' => 'lal', 'Lalb_Chr11g0070461' => 'lal', 'Lalb_Chr12g0201671' => 'lal', 'Lalb_Chr13g0297161' => 'lal', 'Lj1g0002823' => 'lja', 'Lj3C1074T6' => 'lonja', 'Lj4A212T28' => 'lonja', 'Lj4g0005516' => 'lja', 'Lj4g0013705' => 'lja', 'Lj4g0027865' => 'lja', 'Lj5C92G16' => 'lonja', 'Lj5C92T12' => 'lonja', 'Lj7C596T3' => 'lonja', 'Lj9A446G59' => 'lonja', 'Lj9A482G21' => 'lonja', 'Lsat_1_v5_gn_1_28261' => 'lsa', 'Lsat_1_v5_gn_1_28281' => 'lsa', 'Lsat_1_v5_gn_1_32721' => 'lsa', 'Lsat_1_v5_gn_4_151760' => 'lsa', 'Lsat_1_v5_gn_4_2120' => 'lsa', 'Lsat_1_v5_gn_4_75761' => 'lsa', 'Lsat_1_v5_gn_5_10920' => 'lsa', 'Manes.02G099900' => 'mes', 'Manes.11G096200' => 'mes', 'Manes.12G007200' => 'mes', 'Manes.14G048300' => 'mes', 'Manes.17G114700' => 'mes', 'Mapoly0002s0070' => 'mpo', 'Mapoly0029s0099' => 'mpo', 'MBI07_g24742_MAGBIO' => 'mbi', 'MBI10_g27988_MAGBIO' => 'mbi', 'MBI11_g13057_MAGBIO' => 'mbi', 'MD02G1137200' => 'mdo', 'MD06G1137200' => 'mdo', 'MD07G1122300' => 'mdo', 'MD09G1078200' => 'mdo', 'MD13G1123700' => 'mdo', 'MD14G1151900' => 'mdo', 'MD17G1030900' => 'mdo', 'MD17G1068200' => 'mdo', 'MD17G1068600' => 'mdo', 'Medtr3g077540' => 'mtr', 'Medtr4g105530' => 'mtr', 'Medtr8g076580' => 'mtr', 'Medtr8g076590' => 'mtr', 'Medtr8g096410' => 'mtr', 'MELO3C016411.2' => 'cme', 'MELO3C017780.2' => 'cme', 'MELO3C022560.2' => 'cme', 'MELO3C026187.2' => 'cme', 'MELO3C026286.2' => 'cme', 'MELO3C032854.2' => 'cme', 'Migut.H02495' => 'egut', 'Migut.I00561' => 'egut', 'Migut.K01015' => 'egut', 'Migut.K01016' => 'egut', 'Migut.L00743' => 'egut', 'Migut.L00744' => 'egut', 'Migut.L00746' => 'egut', 'Migut.L00798' => 'egut', 'Migut.L00799' => 'egut', 'Migut.N02096' => 'egut', 'MSTRG.11259' => 'ama', 'MSTRG.23142' => 'ama', 'MSTRG.2499' => 'ama', 'Nitab4.5_0000003g0730' => 'nta', 'Nitab4.5_0000137g0020' => 'nta', 'Nitab4.5_0000721g0210' => 'nta', 'Nitab4.5_0000723g0050' => 'nta', 'Nitab4.5_0000913g0070' => 'nta', 'Nitab4.5_0001332g0040' => 'nta', 'Nitab4.5_0001771g0050' => 'nta', 'Nitab4.5_0001918g0050' => 'nta', 'Nitab4.5_0002686g0030' => 'nta', 'Nitab4.5_0003156g0020' => 'nta', 'Nitab4.5_0003383g0040' => 'nta', 'Nitab4.5_0003918g0010' => 'nta', 'Nitab4.5_0006760g0010' => 'nta', 'Nn1g05981' => 'nnu', 'Nn1g06288' => 'nnu', 'Nn3g16371' => 'nnu', 'Nn3g16786' => 'nnu', 'Nn4g22232' => 'nnu', 'Oeu005144.1' => 'oeu', 'Oeu005145.1' => 'oeu', 'Oeu011348.1' => 'oeu', 'Oeu016415.1' => 'oeu', 'Oeu023501.1' => 'oeu', 'Oeu044473.1' => 'oeu', 'Oeu048892.2' => 'oeu', 'Os01g0549200' => 'osa', 'Os02g0469300' => 'osa', 'Os04g0311100' => 'osa', 'Os06g0474900' => 'osa', 'Os10g0181700' => 'osa', 'Os11g0454800' => 'osa', 'Peaxi162Scf00037g00714' => 'pax', 'Peaxi162Scf00084g01217' => 'pax', 'Peaxi162Scf00257g00217' => 'pax', 'Peaxi162Scf00516g00215' => 'pax', 'Peaxi162Scf00689g00123' => 'pax', 'PGR044G2719' => 'pgr', 'PGR083G1360' => 'pgr', 'PGR102G2849' => 'pgr', 'PGR119G2534' => 'pgr', 'PGSC0003DMG400003538' => 'stu', 'PGSC0003DMG400028138' => 'stu', 'PGSC0003DMG400031732' => 'stu', 'PGSC0003DMG400038165' => 'stu', 'Phvul.002G284600' => 'pvu', 'Phvul.003G258200' => 'pvu', 'Phvul.009G176500' => 'pvu', 'Potri.003G167201' => 'ptr', 'Potri.005G118400' => 'ptr', 'Potri.012G089000' => 'ptr', 'Potri.012G102800' => 'ptr', 'Potri.015G079400' => 'ptr', 'Potri.015G100900' => 'ptr', 'Pp3c14_9810' => 'ppa', 'Pp3c15_10450' => 'ppa', 'Pp3c20_19150' => 'ppa', 'Pp3c23_12740' => 'ppa', 'Pp3c23_6310' => 'ppa', 'Pp3c24_3720' => 'ppa', 'Pp3c27_2580' => 'ppa', 'Pp3c9_8990' => 'ppa', 'PRCOL_00002854' => 'pco', 'Prupe.1G221200' => 'ppe', 'Prupe.3G289000' => 'ppe', 'Prupe.5G147000' => 'ppe', 'Prupe.6G157300' => 'ppe', 'Prupe.7G163400' => 'ppe', 'Psat0s2177g0040' => 'psa', 'Psat3g174760' => 'psa', 'Psat3g192160' => 'psa', 'Psat4g058520' => 'psa', 'Psat4g096840' => 'psa', 'Psat7g037320' => 'psa', 'PSO017G1274' => 'pso', 'PSO017G5166' => 'pso', 'PSO063G4558' => 'pso', 'PSO170G4458' => 'pso', 'PSO170G5005' => 'pso', 'PSO210G6156' => 'pso', 'PSO210G6635' => 'pso', 'PSO210G7397' => 'pso', 'PSO210G7700' => 'pso', 'PSO455G0035' => 'pso', 'PSO455G0180' => 'pso', 'PSO478G4515' => 'pso', 'PSO832G1305' => 'pso', 'PSO832G3489' => 'pso', 'QL02p075247' => 'qlo', 'QL03p051148' => 'qlo', 'QL05p010313' => 'qlo', 'QL06p034627' => 'qlo', 'QL10p001889' => 'qlo', 'QL10p010846' => 'qlo', 'RcHm_v2.0_Chr1g0350621' => 'rch', 'RcHm_v2.0_Chr1g0350641' => 'rch', 'RcHm_v2.0_Chr2g0092891' => 'rch', 'RcHm_v2.0_Chr2g0100251' => 'rch', 'RcHm_v2.0_Chr2g0158661' => 'rch', 'RcHm_v2.0_Chr2g0172741' => 'rch', 'RcHm_v2.0_Chr4g0429571' => 'rch', 'RcHm_v2.0_Chr5g0042471' => 'rch', 'RcHm_v2.0_Chr7g0189451' => 'rch', 'Rhsim08G0052000' => 'rsi', 'Rhsim08G0174400' => 'rsi', 'Rhsim08G0193200' => 'rsi', 'Rhsim10G0214800' => 'rsi', 'Rhsim10G0214900' => 'rsi', 'Rhsim10G0215000' => 'rsi', 'Rhsim12G0022900' => 'rsi', 'Rhsim12G0177500' => 'rsi', 'Rhsim12G0177700' => 'rsi', 'Sabra03G0122600' => 'sbr', 'Sabra05G0097400' => 'sbr', 'Sabra12G0064100' => 'sbr', 'Sabra15G0121300' => 'sbr', 'SalBow2G0642' => 'sbo', 'SalBow5G2667' => 'sbo', 'SalBow5G4873' => 'sbo', 'SalBow8G2395' => 'sbo', 'Sc03g0003290' => 'sci', 'Sc10g0010130' => 'sci', 'Sc22g0003650' => 'sci', 'Sed0001603' => 'sed', 'Sed0004259' => 'sed', 'Sed0006789' => 'sed', 'Sed0011838' => 'sed', 'Sed0012964' => 'sed', 'Sed0016383' => 'sed', 'Sed0019010' => 'sed', 'Sed0020188' => 'sed', 'SEGI_04702' => 'sgi', 'SEGI_17231' => 'sgi', 'SEGI_18877' => 'sgi', 'SEGI_25196' => 'sgi', 'SEGI_25515' => 'sgi', 'SEGI_28445' => 'sgi', 'SEGI_37452' => 'sgi', 'SGA_v2.0_scaffold188G40336' => 'sas', 'SGA_v2.0_scaffold228G43247' => 'sas', 'SGA_v2.0_scaffold280G46853' => 'sas', 'SGA_v2.0_scaffold34G13808' => 'sas', 'SGA_v2.0_scaffold40G15576' => 'sas', 'SGA_v2.0_scaffold611G53188' => 'sas', 'SGA_v2.0_scaffold78G25461' => 'sas', 'SGA_v2.0_scaffold90G27888' => 'sas', 'SHI08601' => 'shi', 'SHI08606' => 'shi', 'SHI17117' => 'shi', 'SHI17119' => 'shi', 'SMO118G0201' => 'smo', 'SMO169G0247' => 'smo', 'SMO176G0006' => 'smo', 'SMO176G0015' => 'smo', 'SMO202G0006' => 'smo', 'SMO240G0050' => 'smo', 'SMO286G0009' => 'smo', 'SMO338G0033' => 'smo', 'SMO356G0533' => 'smo', 'SMO364G0382' => 'smo', 'SMO367G0166' => 'smo', 'SMO367G1098' => 'smo', 'Solyc01g009920.3' => 'sly', 'Solyc01g099300.3' => 'sly', 'Solyc02g084700.3' => 'sly', 'Solyc03g097520.3' => 'sly', 'Solyc06g071580.3' => 'sly', 'Solyc10g081760.3' => 'sly', 'Sopen01g005480' => 'spe', 'Sopen01g042850' => 'spe', 'Sopen02g029370' => 'spe', 'Sopen03g028280' => 'spe', 'Sopen06g027870' => 'spe', 'Sopen10g032270' => 'spe', 'Sp5g18180' => 'spa', 'Sp6g12880' => 'spa', 'Sp6g30850' => 'spa', 'Sp7g22960' => 'spa', 'Sp7g34010' => 'spa', 'SpUn1326_0010' => 'spa', 'TAR371G0242' => 'tar', 'TAR622G0638' => 'tar', 'TAR628G1548' => 'tar', 'TAR629G1079' => 'tar', 'TAR629G3413' => 'tar', 'THA.LOC104804249' => 'tha', 'THA.LOC104808315' => 'tha', 'THA.LOC104809238' => 'tha', 'THA.LOC104825484' => 'tha', 'Thecc.01G025500' => 'tca', 'Thecc.03G015800' => 'tca', 'Thecc.03G018000' => 'tca', 'Thecc.03G134800' => 'tca', 'Thecc.04G014700' => 'tca', 'Thhalv10006991m.g' => 'esa', 'Thhalv10012707m.g' => 'esa', 'Thhalv10015739m.g' => 'esa', 'Thhalv10024553m.g' => 'esa', 'Thhalv10024673m.g' => 'esa', 'Thhalv10029187m.g' => 'esa', 'TPR.G12971' => 'tpr', 'TPR.G29396' => 'tpr', 'TPR.G33376' => 'tpr', 'TPR.G35508' => 'tpr', 'TPR.G35516' => 'tpr', 'TPR.G37317' => 'tpr', 'TPR.G37389' => 'tpr', 'TPR.G37523' => 'tpr', 'TPR.G559' => 'tpr', 'TWI14G0070' => 'twi', 'TWI14G0729' => 'twi', 'TWI18G0596' => 'twi', 'TWI39G0780' => 'twi', 'TWI39G0850' => 'twi', 'TWI73G1052' => 'twi', 'unitig_52.g17485' => 'ugi', 'unitig_61.g26355' => 'ugi', 'vmacro01040' => 'vma', 'vmacro16731' => 'vma', 'vmacro18270' => 'vma', 'vmacro19142' => 'vma', 'vmacro19407' => 'vma', 'vmacro19408' => 'vma', 'vmacro21899' => 'vma', 'vmacro21900' => 'vma', 'vmacro21901' => 'vma', 'VMungo0251G0490' => 'vmu', 'VMungo0251G1748' => 'vmu', 'VMungo1309G0421' => 'vmu', 'Zm00001eb086500' => 'zma', 'Zm00001eb150680' => 'zma', 'Zm00001eb162330' => 'zma', 'Zm00001eb203130' => 'zma', 'Zm00001eb369480' => 'zma', 'Zm00001eb382340' => 'zma', 'Zm00001eb416360' => 'zma' ), 'gf_id' => 'HOM05D000902', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000902' ), 'data_identifier' => 'HOM05D000902', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000902', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '663', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02470' => 'bna', 'A01p16260' => 'bna', 'A02p01680' => 'bna', 'A03p16600' => 'bna', 'A03p55660' => 'bna', 'A03p64160' => 'bna', 'A03p64170' => 'bna', 'A08p31900' => 'bna', 'A09p59530' => 'bna', 'A10p08230' => 'bna', 'A10p25090' => 'bna', 'Aa31LG3G7100' => 'aar', 'Aa31LG3G7110' => 'aar', 'Aa31LG6G13160' => 'aar', 'Aa31LG7G10770' => 'aar', 'Aa31LG7G3830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2723' => 'aag', 'Actinidia08045' => 'ach', 'Actinidia08888' => 'ach', 'Actinidia18333' => 'ach', 'Actinidia19334' => 'ach', 'Actinidia25552' => 'ach', 'Actinidia26089' => 'ach', 'Actinidia30615' => 'ach', 'Actinidia30616' => 'ach', 'Actinidia33083' => 'ach', 'Actinidia35762' => 'ach', 'Ah.02g110620' => 'amhyb', 'Ah.11g046390' => 'amhyb', 'AL1G31670' => 'aly', 'AL6G23730' => 'aly', 'AL7G14740' => 'aly', 'AL7G14750' => 'aly', 'AL7G14760' => 'aly', 'AL7G28220' => 'aly', 'AL8G24940' => 'aly', 'Aqoxy3G01665' => 'aox', 'Aqoxy3G02853' => 'aox', 'Aqoxy5G01513' => 'aox', 'Aqoxy5G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8SKA4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ75LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKDA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0LJZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7REX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZP4YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWX7I5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2QKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS0L9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPCD8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q161UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC7XCF' => 'arhy', 'AT1G19100' => 'ath', 'AT4G24970' => 'ath', 'AT4G36270' => 'ath', 'AT4G36280' => 'ath', 'AT4G36290' => 'ath', 'AT5G13130' => 'ath', 'AT5G50780' => 'ath', 'ATR0582G266' => 'atr', 'ATR0661G195' => 'atr', 'ATR1152G031' => 'atr', 'Atru.chr11.2382' => 'acertr', 'Atru.chr12.2337' => 'acertr', 'Atru.chr3.744' => 'acertr', 'Atru.chr6.1870' => 'acertr', 'Atru.chr9.2515' => 'acertr', 'AUR62004120' => 'cqu', 'AUR62005667' => 'cqu', 'AUR62007634' => 'cqu', 'AUR62008186' => 'cqu', 'AUR62008187' => 'cqu', 'AUR62008188' => 'cqu', 'AUR62027954' => 'cqu', 'AUR62028766' => 'cqu', 'AUR62028767' => 'cqu', 'AUR62028768' => 'cqu', 'AUR62028886' => 'cqu', 'AUR62029563' => 'cqu', 'AUR62038832' => 'cqu', 'BcaB01g04149' => 'bca', 'BcaB03g12940' => 'bca', 'BcaB03g13090' => 'bca', 'BcaB03g14466' => 'bca', 'BcaB05g24035' => 'bca', 'BcaC01g06050' => 'bca', 'BcaC04g19148' => 'bca', 'BcaC04g20761' => 'bca', 'BcaC06g32845' => 'bca', 'BcaC07g41274' => 'bca', 'BcaC09g50827' => 'bca', 'BcaNung00741' => 'bca', 'BcaNung00742' => 'bca', 'BcaNung01859' => 'bca', 'BcaNung03985' => 'bca', 'BcaNung03989' => 'bca', 'BcaNung05661' => 'bca', 'BolC1t00257H' => 'bol', 'BolC1t01956H' => 'bol', 'BolC2t06534H' => 'bol', 'BolC3t14334H' => 'bol', 'BolC5t30451H' => 'bol', 'BolC7t45880H' => 'bol', 'BolC7t46586H' => 'bol', 'BolC8t49301H' => 'bol', 'BolC8t51837H' => 'bol', 'BolC9t56822H' => 'bol', 'BolC9t59235H' => 'bol', 'BraA01t00234Z' => 'bra', 'BraA01t01563Z' => 'bra', 'BraA02t05147Z' => 'bra', 'BraA03t10947Z' => 'bra', 'BraA03t14633Z' => 'bra', 'BraA08t35112Z' => 'bra', 'BraA09t41330Z' => 'bra', 'BraA10t44570Z' => 'bra', 'C01p02670' => 'bna', 'C01p20260' => 'bna', 'C02p05890' => 'bna', 'C03p19530' => 'bna', 'C05p17470' => 'bna', 'C07p53900' => 'bna', 'C07p61630' => 'bna', 'C08p16800' => 'bna', 'C08p42810' => 'bna', 'C09p39480' => 'bna', 'C09p63980' => 'bna', 'CAN.G1001.7' => 'can', 'CAN.G1034.55' => 'can', 'CAN.G143.7' => 'can', 'CAN.G3340.1' => 'can', 'CAN.G358.19' => 'can', 'CAN.G373.2' => 'can', 'CAN.G674.16' => 'can', 'CAN.G674.17' => 'can', 'CAN.G674.18' => 'can', 'CAN.G732.2' => 'can', 'CAN.G732.3' => 'can', 'CAN.G993.39' => 'can', 'CANSAT01G2052' => 'cansat', 'CANSAT80G0070' => 'cansat', 'CANSAT80G0483' => 'cansat', 'CANSAT80G0625' => 'cansat', 'CARHR019690' => 'chi', 'CARHR080280' => 'chi', 'CARHR152750' => 'chi', 'CARHR152760' => 'chi', 'CARHR152770' => 'chi', 'CARHR200340' => 'chi', 'CARHR232370' => 'chi', 'CARHR244670' => 'chi', 'CARHR244680' => 'chi', 'CARHR257520' => 'chi', 'Carub.0001s1872' => 'cru', 'Carub.0006s1130' => 'cru', 'Carub.0007s0396' => 'cru', 'Carub.0007s0397' => 'cru', 'Carub.0007s1608' => 'cru', 'Carub.0008s1068' => 'cru', 'Carub.0008s1077' => 'cru', 'Ca_16158_v3' => 'car', 'Ca_17571_v3' => 'car', 'Ca_21936_v3' => 'car', 'Ca_22350_v3' => 'car', 'CBR_g22445' => 'cbr', 'CBR_g26290' => 'cbr', 'Cc04_g09610' => 'ccan', 'Cc04_g12280' => 'ccan', 'Cc07_g10230' => 'ccan', 'CDE02G0093' => 'cde', 'CDE02G0701' => 'cde', 'CDE04G1050' => 'cde', 'CDE05G1833' => 'cde', 'CDE05G3058' => 'cde', 'CDE05G3380' => 'cde', 'CDE06G0536' => 'cde', 'Cfa006923' => 'cfa', 'Cfa009402' => 'cfa', 'Cfa018751' => 'cfa', 'Cfa019164' => 'cfa', 'Cfa022935' => 'cfa', 'Ciclev10019081m.g' => 'ccl', 'Ciclev10025076m.g' => 'ccl', 'Ciclev10030712m.g' => 'ccl', 'Ciclev10033760m.g' => 'ccl', 'CiPaw.05G105600' => 'cil', 'CiPaw.08G136700' => 'cil', 'CiPaw.11G003900' => 'cil', 'CiPaw.11G023700' => 'cil', 'CiPaw.12G003700' => 'cil', 'ClCG06G017100' => 'cla', 'ClCG06G018110' => 'cla', 'ClCG07G008800' => 'cla', 'ClCG07G015330' => 'cla', 'COL.COLO4_13698' => 'col', 'COL.COLO4_16659' => 'col', 'COL.COLO4_21986' => 'col', 'COL.COLO4_24049' => 'col', 'COL.COLO4_29061' => 'col', 'COL.COLO4_29075' => 'col', 'COL.COLO4_30094' => 'col', 'Cpa.g.c33689' => 'cpa', 'Cpa.g.sc108.39' => 'cpa', 'Cpa.g.sc108.41' => 'cpa', 'Cpa.g.sc1163.1' => 'cpa', 'Cpa.g.sc4.155' => 'cpa', 'Cpa.g.sc6.194' => 'cpa', 'CsaV3_1G000340' => 'csa', 'CsaV3_1G001400' => 'csa', 'CsaV3_4G002220' => 'csa', 'CsaV3_4G005370' => 'csa', 'CSS0007487' => 'camsi', 'CSS0008066' => 'camsi', 'CSS0009120' => 'camsi', 'CSS0015512' => 'camsi', 'CSS0022409' => 'camsi', 'CSS0025358' => 'camsi', 'CSS0044547' => 'camsi', 'DCAR_013057' => 'dca', 'DCAR_015058' => 'dca', 'DCAR_016027' => 'dca', 'DCAR_017327' => 'dca', 'DCAR_020743' => 'dca', 'DCAR_026157' => 'dca', 'DCAR_032339' => 'dca', 'DCAR_032340' => 'dca', 'Dinv11200' => 'din', 'Dinv11201' => 'din', 'Dinv20631' => 'din', 'Dinv23182' => 'din', 'Dinv33466' => 'din', 'Dinv33583' => 'din', 'Dinv38565' => 'din', 'Duzib068G0200' => 'dzi', 'Duzib147G0132' => 'dzi', 'Duzib147G0635' => 'dzi', 'Duzib205G1670' => 'dzi', 'Duzib251G0606' => 'dzi', 'ECA232G3336' => 'eca', 'ECA232G3763' => 'eca', 'ECA232G4845' => 'eca', 'ECA234G1607' => 'eca', 'ECA246G0932' => 'eca', 'ECA247G0781' => 'eca', 'ECA247G1932' => 'eca', 'ECA247G2079' => 'eca', 'ECA247G3338' => 'eca', 'ECA247G4115' => 'eca', 'EL10Ac3g06552' => 'bvu', 'EL10Ac5g10721' => 'bvu', 'EL10Ac5g10722' => 'bvu', 'EL10Ac5g10723' => 'bvu', 'EL10Ac5g11361' => 'bvu', 'EL10Ac6g13553' => 'bvu', 'EL10As8g23872' => 'bvu', 'Eucgr.B00250' => 'egr', 'Eucgr.B00251' => 'egr', 'Eucgr.B03533' => 'egr', 'Eucgr.I02381' => 'egr', 'Eucgr.K02700' => 'egr', 'FAN02G0174' => 'fan', 'FAN02G3146' => 'fan', 'FAN04G1672' => 'fan', 'FAN04G2273' => 'fan', 'FAN05G2791' => 'fan', 'FAN05G4035' => 'fan', 'FAN07G0834' => 'fan', 'FAN08G1198' => 'fan', 'FAN09G4182' => 'fan', 'FAN12G0496' => 'fan', 'FAN13G1027' => 'fan', 'FAN13G2951' => 'fan', 'FAN14G0705' => 'fan', 'FAN14G0720' => 'fan', 'FAN17G0201' => 'fan', 'FAN17G2665' => 'fan', 'FAN18G1456' => 'fan', 'FAN18G1525' => 'fan', 'FAN18G3500' => 'fan', 'FAN28G2670' => 'fan', 'FvH4_1g12391' => 'fve', 'FvH4_4g23220' => 'fve', 'FvH4_5g08810' => 'fve', 'FvH4_5g28960' => 'fve', 'FvH4_6g42820' => 'fve', 'FvH4_6g51110' => 'fve', 'Glyma.02G051802' => 'gma', 'Glyma.04G185300' => 'gma', 'Glyma.05G202900' => 'gma', 'Glyma.08G010300' => 'gma', 'Glyma.16G131900' => 'gma', 'Glyma.17G087900' => 'gma', 'Gohir.A07G048600' => 'ghi', 'Gohir.A11G179000' => 'ghi', 'Gohir.A12G140900' => 'ghi', 'Gohir.A12G140950' => 'ghi', 'Gohir.A12G191700' => 'ghi', 'Gohir.A13G086300' => 'ghi', 'Gohir.D07G052900' => 'ghi', 'Gohir.D11G186600' => 'ghi', 'Gohir.D12G145575' => 'ghi', 'Gohir.D12G145650' => 'ghi', 'Gohir.D12G145725' => 'ghi', 'Gohir.D12G194050' => 'ghi', 'Gohir.D13G091800' => 'ghi', 'Gorai.001G055900' => 'gra', 'Gorai.007G198400' => 'gra', 'Gorai.008G157000' => 'gra', 'Gorai.008G157100' => 'gra', 'Gorai.008G208700' => 'gra', 'Gorai.010G138700' => 'gra', 'GSVIVG01000977001' => 'vvi', 'GSVIVG01007708001' => 'vvi', 'GSVIVG01008587001' => 'vvi', 'GSVIVG01018849001' => 'vvi', 'GSVIVG01032432001' => 'vvi', 'HanXRQChr02g0034131' => 'han', 'HanXRQChr02g0035981' => 'han', 'HanXRQChr02g0035991' => 'han', 'HanXRQChr05g0155611' => 'han', 'HanXRQChr05g0155621' => 'han', 'HanXRQChr08g0236501' => 'han', 'HanXRQChr09g0261321' => 'han', 'HanXRQChr09g0272081' => 'han', 'HanXRQChr10g0310741' => 'han', 'HanXRQChr11g0325591' => 'han', 'HanXRQChr12g0385691' => 'han', 'HanXRQChr13g0387801' => 'han', 'HanXRQChr15g0463011' => 'han', 'Haze_03826' => 'cav', 'Haze_03827' => 'cav', 'Haze_07183' => 'cav', 'Haze_07537' => 'cav', 'Haze_07539' => 'cav', 'Haze_12461' => 'cav', 'Haze_16115' => 'cav', 'Haze_16808' => 'cav', 'Haze_18531' => 'cav', 'Hma1.2p1_0046F.1_g026700' => 'hma', 'Hma1.2p1_0046F.1_g026710' => 'hma', 'Hma1.2p1_0168F.1_g074340' => 'hma', 'Hma1.2p1_0266F.1_g107030' => 'hma', 'Hma1.2p1_0266F.1_g107060' => 'hma', 'Hma1.2p1_0275F.1_g110510' => 'hma', 'Hma1.2p1_0592F.1_g185490' => 'hma', 'Hma1.2p1_0592F.1_g185500' => 'hma', 'Hma1.2p1_0592F.1_g185510' => 'hma', 'Hma1.2p1_0592F.1_g185520' => 'hma', 'Hma1.2p1_0592F.1_g185530' => 'hma', 'Hma1.2p1_0818F.1_g223450' => 'hma', 'HPP92_009708' => 'vpl', 'HPP92_009793' => 'vpl', 'HPP92_009796' => 'vpl', 'HPP92_009797' => 'vpl', 'HPP92_014940' => 'vpl', 'HPP92_014988' => 'vpl', 'Hund02463' => 'sun', 'Hund02760' => 'sun', 'Hund05071' => 'sun', 'Hund10108' => 'sun', 'Hund11204' => 'sun', 'Hund14016' => 'sun', 'Hund16464' => 'sun', 'Lalb_Chr09g0333391' => 'lal', 'Lalb_Chr11g0070461' => 'lal', 'Lalb_Chr12g0201671' => 'lal', 'Lalb_Chr13g0297161' => 'lal', 'Lj1g0002823' => 'lja', 'Lj3C1074T6' => 'lonja', 'Lj4A212T28' => 'lonja', 'Lj4g0005516' => 'lja', 'Lj4g0013705' => 'lja', 'Lj4g0027865' => 'lja', 'Lj5C92G16' => 'lonja', 'Lj5C92T12' => 'lonja', 'Lj7C596T3' => 'lonja', 'Lj9A446G59' => 'lonja', 'Lj9A482G21' => 'lonja', 'Lsat_1_v5_gn_1_28261' => 'lsa', 'Lsat_1_v5_gn_1_28281' => 'lsa', 'Lsat_1_v5_gn_1_32721' => 'lsa', 'Lsat_1_v5_gn_4_151760' => 'lsa', 'Lsat_1_v5_gn_4_2120' => 'lsa', 'Lsat_1_v5_gn_4_75761' => 'lsa', 'Lsat_1_v5_gn_5_10920' => 'lsa', 'Manes.02G099900' => 'mes', 'Manes.11G096200' => 'mes', 'Manes.12G007200' => 'mes', 'Manes.14G048300' => 'mes', 'Manes.17G114700' => 'mes', 'Mapoly0002s0070' => 'mpo', 'Mapoly0029s0099' => 'mpo', 'MBI07_g24742_MAGBIO' => 'mbi', 'MBI10_g27988_MAGBIO' => 'mbi', 'MBI11_g13057_MAGBIO' => 'mbi', 'MD02G1137200' => 'mdo', 'MD06G1137200' => 'mdo', 'MD07G1122300' => 'mdo', 'MD09G1078200' => 'mdo', 'MD13G1123700' => 'mdo', 'MD14G1151900' => 'mdo', 'MD17G1030900' => 'mdo', 'MD17G1068200' => 'mdo', 'MD17G1068600' => 'mdo', 'Medtr3g077540' => 'mtr', 'Medtr4g105530' => 'mtr', 'Medtr8g076580' => 'mtr', 'Medtr8g076590' => 'mtr', 'Medtr8g096410' => 'mtr', 'MELO3C016411.2' => 'cme', 'MELO3C017780.2' => 'cme', 'MELO3C022560.2' => 'cme', 'MELO3C026187.2' => 'cme', 'MELO3C026286.2' => 'cme', 'MELO3C032854.2' => 'cme', 'Migut.H02495' => 'egut', 'Migut.I00561' => 'egut', 'Migut.K01015' => 'egut', 'Migut.K01016' => 'egut', 'Migut.L00743' => 'egut', 'Migut.L00744' => 'egut', 'Migut.L00746' => 'egut', 'Migut.L00798' => 'egut', 'Migut.L00799' => 'egut', 'Migut.N02096' => 'egut', 'MSTRG.11259' => 'ama', 'MSTRG.23142' => 'ama', 'MSTRG.2499' => 'ama', 'Nitab4.5_0000003g0730' => 'nta', 'Nitab4.5_0000137g0020' => 'nta', 'Nitab4.5_0000721g0210' => 'nta', 'Nitab4.5_0000723g0050' => 'nta', 'Nitab4.5_0000913g0070' => 'nta', 'Nitab4.5_0001332g0040' => 'nta', 'Nitab4.5_0001771g0050' => 'nta', 'Nitab4.5_0001918g0050' => 'nta', 'Nitab4.5_0002686g0030' => 'nta', 'Nitab4.5_0003156g0020' => 'nta', 'Nitab4.5_0003383g0040' => 'nta', 'Nitab4.5_0003918g0010' => 'nta', 'Nitab4.5_0006760g0010' => 'nta', 'Nn1g05981' => 'nnu', 'Nn1g06288' => 'nnu', 'Nn3g16371' => 'nnu', 'Nn3g16786' => 'nnu', 'Nn4g22232' => 'nnu', 'Oeu005144.1' => 'oeu', 'Oeu005145.1' => 'oeu', 'Oeu011348.1' => 'oeu', 'Oeu016415.1' => 'oeu', 'Oeu023501.1' => 'oeu', 'Oeu044473.1' => 'oeu', 'Oeu048892.2' => 'oeu', 'Os01g0549200' => 'osa', 'Os02g0469300' => 'osa', 'Os04g0311100' => 'osa', 'Os06g0474900' => 'osa', 'Os10g0181700' => 'osa', 'Os11g0454800' => 'osa', 'Peaxi162Scf00037g00714' => 'pax', 'Peaxi162Scf00084g01217' => 'pax', 'Peaxi162Scf00257g00217' => 'pax', 'Peaxi162Scf00516g00215' => 'pax', 'Peaxi162Scf00689g00123' => 'pax', 'PGR044G2719' => 'pgr', 'PGR083G1360' => 'pgr', 'PGR102G2849' => 'pgr', 'PGR119G2534' => 'pgr', 'PGSC0003DMG400003538' => 'stu', 'PGSC0003DMG400028138' => 'stu', 'PGSC0003DMG400031732' => 'stu', 'PGSC0003DMG400038165' => 'stu', 'Phvul.002G284600' => 'pvu', 'Phvul.003G258200' => 'pvu', 'Phvul.009G176500' => 'pvu', 'Potri.003G167201' => 'ptr', 'Potri.005G118400' => 'ptr', 'Potri.012G089000' => 'ptr', 'Potri.012G102800' => 'ptr', 'Potri.015G079400' => 'ptr', 'Potri.015G100900' => 'ptr', 'Pp3c14_9810' => 'ppa', 'Pp3c15_10450' => 'ppa', 'Pp3c20_19150' => 'ppa', 'Pp3c23_12740' => 'ppa', 'Pp3c23_6310' => 'ppa', 'Pp3c24_3720' => 'ppa', 'Pp3c27_2580' => 'ppa', 'Pp3c9_8990' => 'ppa', 'PRCOL_00002854' => 'pco', 'Prupe.1G221200' => 'ppe', 'Prupe.3G289000' => 'ppe', 'Prupe.5G147000' => 'ppe', 'Prupe.6G157300' => 'ppe', 'Prupe.7G163400' => 'ppe', 'Psat0s2177g0040' => 'psa', 'Psat3g174760' => 'psa', 'Psat3g192160' => 'psa', 'Psat4g058520' => 'psa', 'Psat4g096840' => 'psa', 'Psat7g037320' => 'psa', 'PSO017G1274' => 'pso', 'PSO017G5166' => 'pso', 'PSO063G4558' => 'pso', 'PSO170G4458' => 'pso', 'PSO170G5005' => 'pso', 'PSO210G6156' => 'pso', 'PSO210G6635' => 'pso', 'PSO210G7397' => 'pso', 'PSO210G7700' => 'pso', 'PSO455G0035' => 'pso', 'PSO455G0180' => 'pso', 'PSO478G4515' => 'pso', 'PSO832G1305' => 'pso', 'PSO832G3489' => 'pso', 'QL02p075247' => 'qlo', 'QL03p051148' => 'qlo', 'QL05p010313' => 'qlo', 'QL06p034627' => 'qlo', 'QL10p001889' => 'qlo', 'QL10p010846' => 'qlo', 'RcHm_v2.0_Chr1g0350621' => 'rch', 'RcHm_v2.0_Chr1g0350641' => 'rch', 'RcHm_v2.0_Chr2g0092891' => 'rch', 'RcHm_v2.0_Chr2g0100251' => 'rch', 'RcHm_v2.0_Chr2g0158661' => 'rch', 'RcHm_v2.0_Chr2g0172741' => 'rch', 'RcHm_v2.0_Chr4g0429571' => 'rch', 'RcHm_v2.0_Chr5g0042471' => 'rch', 'RcHm_v2.0_Chr7g0189451' => 'rch', 'Rhsim08G0052000' => 'rsi', 'Rhsim08G0174400' => 'rsi', 'Rhsim08G0193200' => 'rsi', 'Rhsim10G0214800' => 'rsi', 'Rhsim10G0214900' => 'rsi', 'Rhsim10G0215000' => 'rsi', 'Rhsim12G0022900' => 'rsi', 'Rhsim12G0177500' => 'rsi', 'Rhsim12G0177700' => 'rsi', 'Sabra03G0122600' => 'sbr', 'Sabra05G0097400' => 'sbr', 'Sabra12G0064100' => 'sbr', 'Sabra15G0121300' => 'sbr', 'SalBow2G0642' => 'sbo', 'SalBow5G2667' => 'sbo', 'SalBow5G4873' => 'sbo', 'SalBow8G2395' => 'sbo', 'Sc03g0003290' => 'sci', 'Sc10g0010130' => 'sci', 'Sc22g0003650' => 'sci', 'Sed0001603' => 'sed', 'Sed0004259' => 'sed', 'Sed0006789' => 'sed', 'Sed0011838' => 'sed', 'Sed0012964' => 'sed', 'Sed0016383' => 'sed', 'Sed0019010' => 'sed', 'Sed0020188' => 'sed', 'SEGI_04702' => 'sgi', 'SEGI_17231' => 'sgi', 'SEGI_18877' => 'sgi', 'SEGI_25196' => 'sgi', 'SEGI_25515' => 'sgi', 'SEGI_28445' => 'sgi', 'SEGI_37452' => 'sgi', 'SGA_v2.0_scaffold188G40336' => 'sas', 'SGA_v2.0_scaffold228G43247' => 'sas', 'SGA_v2.0_scaffold280G46853' => 'sas', 'SGA_v2.0_scaffold34G13808' => 'sas', 'SGA_v2.0_scaffold40G15576' => 'sas', 'SGA_v2.0_scaffold611G53188' => 'sas', 'SGA_v2.0_scaffold78G25461' => 'sas', 'SGA_v2.0_scaffold90G27888' => 'sas', 'SHI08601' => 'shi', 'SHI08606' => 'shi', 'SHI17117' => 'shi', 'SHI17119' => 'shi', 'SMO118G0201' => 'smo', 'SMO169G0247' => 'smo', 'SMO176G0006' => 'smo', 'SMO176G0015' => 'smo', 'SMO202G0006' => 'smo', 'SMO240G0050' => 'smo', 'SMO286G0009' => 'smo', 'SMO338G0033' => 'smo', 'SMO356G0533' => 'smo', 'SMO364G0382' => 'smo', 'SMO367G0166' => 'smo', 'SMO367G1098' => 'smo', 'Solyc01g009920.3' => 'sly', 'Solyc01g099300.3' => 'sly', 'Solyc02g084700.3' => 'sly', 'Solyc03g097520.3' => 'sly', 'Solyc06g071580.3' => 'sly', 'Solyc10g081760.3' => 'sly', 'Sopen01g005480' => 'spe', 'Sopen01g042850' => 'spe', 'Sopen02g029370' => 'spe', 'Sopen03g028280' => 'spe', 'Sopen06g027870' => 'spe', 'Sopen10g032270' => 'spe', 'Sp5g18180' => 'spa', 'Sp6g12880' => 'spa', 'Sp6g30850' => 'spa', 'Sp7g22960' => 'spa', 'Sp7g34010' => 'spa', 'SpUn1326_0010' => 'spa', 'TAR371G0242' => 'tar', 'TAR622G0638' => 'tar', 'TAR628G1548' => 'tar', 'TAR629G1079' => 'tar', 'TAR629G3413' => 'tar', 'THA.LOC104804249' => 'tha', 'THA.LOC104808315' => 'tha', 'THA.LOC104809238' => 'tha', 'THA.LOC104825484' => 'tha', 'Thecc.01G025500' => 'tca', 'Thecc.03G015800' => 'tca', 'Thecc.03G018000' => 'tca', 'Thecc.03G134800' => 'tca', 'Thecc.04G014700' => 'tca', 'Thhalv10006991m.g' => 'esa', 'Thhalv10012707m.g' => 'esa', 'Thhalv10015739m.g' => 'esa', 'Thhalv10024553m.g' => 'esa', 'Thhalv10024673m.g' => 'esa', 'Thhalv10029187m.g' => 'esa', 'TPR.G12971' => 'tpr', 'TPR.G29396' => 'tpr', 'TPR.G33376' => 'tpr', 'TPR.G35508' => 'tpr', 'TPR.G35516' => 'tpr', 'TPR.G37317' => 'tpr', 'TPR.G37389' => 'tpr', 'TPR.G37523' => 'tpr', 'TPR.G559' => 'tpr', 'TWI14G0070' => 'twi', 'TWI14G0729' => 'twi', 'TWI18G0596' => 'twi', 'TWI39G0780' => 'twi', 'TWI39G0850' => 'twi', 'TWI73G1052' => 'twi', 'unitig_52.g17485' => 'ugi', 'unitig_61.g26355' => 'ugi', 'vmacro01040' => 'vma', 'vmacro16731' => 'vma', 'vmacro18270' => 'vma', 'vmacro19142' => 'vma', 'vmacro19407' => 'vma', 'vmacro19408' => 'vma', 'vmacro21899' => 'vma', 'vmacro21900' => 'vma', 'vmacro21901' => 'vma', 'VMungo0251G0490' => 'vmu', 'VMungo0251G1748' => 'vmu', 'VMungo1309G0421' => 'vmu', 'Zm00001eb086500' => 'zma', 'Zm00001eb150680' => 'zma', 'Zm00001eb162330' => 'zma', 'Zm00001eb203130' => 'zma', 'Zm00001eb369480' => 'zma', 'Zm00001eb382340' => 'zma', 'Zm00001eb416360' => 'zma' ) $gf_id = 'HOM05D000902' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000902' ) $data_identifier = 'HOM05D000902' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 13, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 10, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 6, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 9, 'hma' => (int) 12, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 4, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 6, 'ppa' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 6, 'rch' => (int) 9, 'rsi' => (int) 9, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 12, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 3, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416360' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000902', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '663', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02470' => 'bna', 'A01p16260' => 'bna', 'A02p01680' => 'bna', 'A03p16600' => 'bna', 'A03p55660' => 'bna', 'A03p64160' => 'bna', 'A03p64170' => 'bna', 'A08p31900' => 'bna', 'A09p59530' => 'bna', 'A10p08230' => 'bna', 'A10p25090' => 'bna', 'Aa31LG3G7100' => 'aar', 'Aa31LG3G7110' => 'aar', 'Aa31LG6G13160' => 'aar', 'Aa31LG7G10770' => 'aar', 'Aa31LG7G3830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2723' => 'aag', 'Actinidia08045' => 'ach', 'Actinidia08888' => 'ach', 'Actinidia18333' => 'ach', 'Actinidia19334' => 'ach', 'Actinidia25552' => 'ach', 'Actinidia26089' => 'ach', 'Actinidia30615' => 'ach', 'Actinidia30616' => 'ach', 'Actinidia33083' => 'ach', 'Actinidia35762' => 'ach', 'Ah.02g110620' => 'amhyb', 'Ah.11g046390' => 'amhyb', 'AL1G31670' => 'aly', 'AL6G23730' => 'aly', 'AL7G14740' => 'aly', 'AL7G14750' => 'aly', 'AL7G14760' => 'aly', 'AL7G28220' => 'aly', 'AL8G24940' => 'aly', 'Aqoxy3G01665' => 'aox', 'Aqoxy3G02853' => 'aox', 'Aqoxy5G01513' => 'aox', 'Aqoxy5G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8SKA4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ75LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKDA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0LJZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7REX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZP4YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWX7I5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2QKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS0L9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPCD8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q161UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC7XCF' => 'arhy', 'AT1G19100' => 'ath', 'AT4G24970' => 'ath', 'AT4G36270' => 'ath', 'AT4G36280' => 'ath', 'AT4G36290' => 'ath', 'AT5G13130' => 'ath', 'AT5G50780' => 'ath', 'ATR0582G266' => 'atr', 'ATR0661G195' => 'atr', 'ATR1152G031' => 'atr', 'Atru.chr11.2382' => 'acertr', 'Atru.chr12.2337' => 'acertr', 'Atru.chr3.744' => 'acertr', 'Atru.chr6.1870' => 'acertr', 'Atru.chr9.2515' => 'acertr', 'AUR62004120' => 'cqu', 'AUR62005667' => 'cqu', 'AUR62007634' => 'cqu', 'AUR62008186' => 'cqu', 'AUR62008187' => 'cqu', 'AUR62008188' => 'cqu', 'AUR62027954' => 'cqu', 'AUR62028766' => 'cqu', 'AUR62028767' => 'cqu', 'AUR62028768' => 'cqu', 'AUR62028886' => 'cqu', 'AUR62029563' => 'cqu', 'AUR62038832' => 'cqu', 'BcaB01g04149' => 'bca', 'BcaB03g12940' => 'bca', 'BcaB03g13090' => 'bca', 'BcaB03g14466' => 'bca', 'BcaB05g24035' => 'bca', 'BcaC01g06050' => 'bca', 'BcaC04g19148' => 'bca', 'BcaC04g20761' => 'bca', 'BcaC06g32845' => 'bca', 'BcaC07g41274' => 'bca', 'BcaC09g50827' => 'bca', 'BcaNung00741' => 'bca', 'BcaNung00742' => 'bca', 'BcaNung01859' => 'bca', 'BcaNung03985' => 'bca', 'BcaNung03989' => 'bca', 'BcaNung05661' => 'bca', 'BolC1t00257H' => 'bol', 'BolC1t01956H' => 'bol', 'BolC2t06534H' => 'bol', 'BolC3t14334H' => 'bol', 'BolC5t30451H' => 'bol', 'BolC7t45880H' => 'bol', 'BolC7t46586H' => 'bol', 'BolC8t49301H' => 'bol', 'BolC8t51837H' => 'bol', 'BolC9t56822H' => 'bol', 'BolC9t59235H' => 'bol', 'BraA01t00234Z' => 'bra', 'BraA01t01563Z' => 'bra', 'BraA02t05147Z' => 'bra', 'BraA03t10947Z' => 'bra', 'BraA03t14633Z' => 'bra', 'BraA08t35112Z' => 'bra', 'BraA09t41330Z' => 'bra', 'BraA10t44570Z' => 'bra', 'C01p02670' => 'bna', 'C01p20260' => 'bna', 'C02p05890' => 'bna', 'C03p19530' => 'bna', 'C05p17470' => 'bna', 'C07p53900' => 'bna', 'C07p61630' => 'bna', 'C08p16800' => 'bna', 'C08p42810' => 'bna', 'C09p39480' => 'bna', 'C09p63980' => 'bna', 'CAN.G1001.7' => 'can', 'CAN.G1034.55' => 'can', 'CAN.G143.7' => 'can', 'CAN.G3340.1' => 'can', 'CAN.G358.19' => 'can', 'CAN.G373.2' => 'can', 'CAN.G674.16' => 'can', 'CAN.G674.17' => 'can', 'CAN.G674.18' => 'can', 'CAN.G732.2' => 'can', 'CAN.G732.3' => 'can', 'CAN.G993.39' => 'can', 'CANSAT01G2052' => 'cansat', 'CANSAT80G0070' => 'cansat', 'CANSAT80G0483' => 'cansat', 'CANSAT80G0625' => 'cansat', 'CARHR019690' => 'chi', 'CARHR080280' => 'chi', 'CARHR152750' => 'chi', 'CARHR152760' => 'chi', 'CARHR152770' => 'chi', 'CARHR200340' => 'chi', 'CARHR232370' => 'chi', 'CARHR244670' => 'chi', 'CARHR244680' => 'chi', 'CARHR257520' => 'chi', 'Carub.0001s1872' => 'cru', 'Carub.0006s1130' => 'cru', 'Carub.0007s0396' => 'cru', 'Carub.0007s0397' => 'cru', 'Carub.0007s1608' => 'cru', 'Carub.0008s1068' => 'cru', 'Carub.0008s1077' => 'cru', 'Ca_16158_v3' => 'car', 'Ca_17571_v3' => 'car', 'Ca_21936_v3' => 'car', 'Ca_22350_v3' => 'car', 'CBR_g22445' => 'cbr', 'CBR_g26290' => 'cbr', 'Cc04_g09610' => 'ccan', 'Cc04_g12280' => 'ccan', 'Cc07_g10230' => 'ccan', 'CDE02G0093' => 'cde', 'CDE02G0701' => 'cde', 'CDE04G1050' => 'cde', 'CDE05G1833' => 'cde', 'CDE05G3058' => 'cde', 'CDE05G3380' => 'cde', 'CDE06G0536' => 'cde', 'Cfa006923' => 'cfa', 'Cfa009402' => 'cfa', 'Cfa018751' => 'cfa', 'Cfa019164' => 'cfa', 'Cfa022935' => 'cfa', 'Ciclev10019081m.g' => 'ccl', 'Ciclev10025076m.g' => 'ccl', 'Ciclev10030712m.g' => 'ccl', 'Ciclev10033760m.g' => 'ccl', 'CiPaw.05G105600' => 'cil', 'CiPaw.08G136700' => 'cil', 'CiPaw.11G003900' => 'cil', 'CiPaw.11G023700' => 'cil', 'CiPaw.12G003700' => 'cil', 'ClCG06G017100' => 'cla', 'ClCG06G018110' => 'cla', 'ClCG07G008800' => 'cla', 'ClCG07G015330' => 'cla', 'COL.COLO4_13698' => 'col', 'COL.COLO4_16659' => 'col', 'COL.COLO4_21986' => 'col', 'COL.COLO4_24049' => 'col', 'COL.COLO4_29061' => 'col', 'COL.COLO4_29075' => 'col', 'COL.COLO4_30094' => 'col', 'Cpa.g.c33689' => 'cpa', 'Cpa.g.sc108.39' => 'cpa', 'Cpa.g.sc108.41' => 'cpa', 'Cpa.g.sc1163.1' => 'cpa', 'Cpa.g.sc4.155' => 'cpa', 'Cpa.g.sc6.194' => 'cpa', 'CsaV3_1G000340' => 'csa', 'CsaV3_1G001400' => 'csa', 'CsaV3_4G002220' => 'csa', 'CsaV3_4G005370' => 'csa', 'CSS0007487' => 'camsi', 'CSS0008066' => 'camsi', 'CSS0009120' => 'camsi', 'CSS0015512' => 'camsi', 'CSS0022409' => 'camsi', 'CSS0025358' => 'camsi', 'CSS0044547' => 'camsi', 'DCAR_013057' => 'dca', 'DCAR_015058' => 'dca', 'DCAR_016027' => 'dca', 'DCAR_017327' => 'dca', 'DCAR_020743' => 'dca', 'DCAR_026157' => 'dca', 'DCAR_032339' => 'dca', 'DCAR_032340' => 'dca', 'Dinv11200' => 'din', 'Dinv11201' => 'din', 'Dinv20631' => 'din', 'Dinv23182' => 'din', 'Dinv33466' => 'din', 'Dinv33583' => 'din', 'Dinv38565' => 'din', 'Duzib068G0200' => 'dzi', 'Duzib147G0132' => 'dzi', 'Duzib147G0635' => 'dzi', 'Duzib205G1670' => 'dzi', 'Duzib251G0606' => 'dzi', 'ECA232G3336' => 'eca', 'ECA232G3763' => 'eca', 'ECA232G4845' => 'eca', 'ECA234G1607' => 'eca', 'ECA246G0932' => 'eca', 'ECA247G0781' => 'eca', 'ECA247G1932' => 'eca', 'ECA247G2079' => 'eca', 'ECA247G3338' => 'eca', 'ECA247G4115' => 'eca', 'EL10Ac3g06552' => 'bvu', 'EL10Ac5g10721' => 'bvu', 'EL10Ac5g10722' => 'bvu', 'EL10Ac5g10723' => 'bvu', 'EL10Ac5g11361' => 'bvu', 'EL10Ac6g13553' => 'bvu', 'EL10As8g23872' => 'bvu', 'Eucgr.B00250' => 'egr', 'Eucgr.B00251' => 'egr', 'Eucgr.B03533' => 'egr', 'Eucgr.I02381' => 'egr', 'Eucgr.K02700' => 'egr', 'FAN02G0174' => 'fan', 'FAN02G3146' => 'fan', 'FAN04G1672' => 'fan', 'FAN04G2273' => 'fan', 'FAN05G2791' => 'fan', 'FAN05G4035' => 'fan', 'FAN07G0834' => 'fan', 'FAN08G1198' => 'fan', 'FAN09G4182' => 'fan', 'FAN12G0496' => 'fan', 'FAN13G1027' => 'fan', 'FAN13G2951' => 'fan', 'FAN14G0705' => 'fan', 'FAN14G0720' => 'fan', 'FAN17G0201' => 'fan', 'FAN17G2665' => 'fan', 'FAN18G1456' => 'fan', 'FAN18G1525' => 'fan', 'FAN18G3500' => 'fan', 'FAN28G2670' => 'fan', 'FvH4_1g12391' => 'fve', 'FvH4_4g23220' => 'fve', 'FvH4_5g08810' => 'fve', 'FvH4_5g28960' => 'fve', 'FvH4_6g42820' => 'fve', 'FvH4_6g51110' => 'fve', 'Glyma.02G051802' => 'gma', 'Glyma.04G185300' => 'gma', 'Glyma.05G202900' => 'gma', 'Glyma.08G010300' => 'gma', 'Glyma.16G131900' => 'gma', 'Glyma.17G087900' => 'gma', 'Gohir.A07G048600' => 'ghi', 'Gohir.A11G179000' => 'ghi', 'Gohir.A12G140900' => 'ghi', 'Gohir.A12G140950' => 'ghi', 'Gohir.A12G191700' => 'ghi', 'Gohir.A13G086300' => 'ghi', 'Gohir.D07G052900' => 'ghi', 'Gohir.D11G186600' => 'ghi', 'Gohir.D12G145575' => 'ghi', 'Gohir.D12G145650' => 'ghi', 'Gohir.D12G145725' => 'ghi', 'Gohir.D12G194050' => 'ghi', 'Gohir.D13G091800' => 'ghi', 'Gorai.001G055900' => 'gra', 'Gorai.007G198400' => 'gra', 'Gorai.008G157000' => 'gra', 'Gorai.008G157100' => 'gra', 'Gorai.008G208700' => 'gra', 'Gorai.010G138700' => 'gra', 'GSVIVG01000977001' => 'vvi', 'GSVIVG01007708001' => 'vvi', 'GSVIVG01008587001' => 'vvi', 'GSVIVG01018849001' => 'vvi', 'GSVIVG01032432001' => 'vvi', 'HanXRQChr02g0034131' => 'han', 'HanXRQChr02g0035981' => 'han', 'HanXRQChr02g0035991' => 'han', 'HanXRQChr05g0155611' => 'han', 'HanXRQChr05g0155621' => 'han', 'HanXRQChr08g0236501' => 'han', 'HanXRQChr09g0261321' => 'han', 'HanXRQChr09g0272081' => 'han', 'HanXRQChr10g0310741' => 'han', 'HanXRQChr11g0325591' => 'han', 'HanXRQChr12g0385691' => 'han', 'HanXRQChr13g0387801' => 'han', 'HanXRQChr15g0463011' => 'han', 'Haze_03826' => 'cav', 'Haze_03827' => 'cav', 'Haze_07183' => 'cav', 'Haze_07537' => 'cav', 'Haze_07539' => 'cav', 'Haze_12461' => 'cav', 'Haze_16115' => 'cav', 'Haze_16808' => 'cav', 'Haze_18531' => 'cav', 'Hma1.2p1_0046F.1_g026700' => 'hma', 'Hma1.2p1_0046F.1_g026710' => 'hma', 'Hma1.2p1_0168F.1_g074340' => 'hma', 'Hma1.2p1_0266F.1_g107030' => 'hma', 'Hma1.2p1_0266F.1_g107060' => 'hma', 'Hma1.2p1_0275F.1_g110510' => 'hma', 'Hma1.2p1_0592F.1_g185490' => 'hma', 'Hma1.2p1_0592F.1_g185500' => 'hma', 'Hma1.2p1_0592F.1_g185510' => 'hma', 'Hma1.2p1_0592F.1_g185520' => 'hma', 'Hma1.2p1_0592F.1_g185530' => 'hma', 'Hma1.2p1_0818F.1_g223450' => 'hma', 'HPP92_009708' => 'vpl', 'HPP92_009793' => 'vpl', 'HPP92_009796' => 'vpl', 'HPP92_009797' => 'vpl', 'HPP92_014940' => 'vpl', 'HPP92_014988' => 'vpl', 'Hund02463' => 'sun', 'Hund02760' => 'sun', 'Hund05071' => 'sun', 'Hund10108' => 'sun', 'Hund11204' => 'sun', 'Hund14016' => 'sun', 'Hund16464' => 'sun', 'Lalb_Chr09g0333391' => 'lal', 'Lalb_Chr11g0070461' => 'lal', 'Lalb_Chr12g0201671' => 'lal', 'Lalb_Chr13g0297161' => 'lal', 'Lj1g0002823' => 'lja', 'Lj3C1074T6' => 'lonja', 'Lj4A212T28' => 'lonja', 'Lj4g0005516' => 'lja', 'Lj4g0013705' => 'lja', 'Lj4g0027865' => 'lja', 'Lj5C92G16' => 'lonja', 'Lj5C92T12' => 'lonja', 'Lj7C596T3' => 'lonja', 'Lj9A446G59' => 'lonja', 'Lj9A482G21' => 'lonja', 'Lsat_1_v5_gn_1_28261' => 'lsa', 'Lsat_1_v5_gn_1_28281' => 'lsa', 'Lsat_1_v5_gn_1_32721' => 'lsa', 'Lsat_1_v5_gn_4_151760' => 'lsa', 'Lsat_1_v5_gn_4_2120' => 'lsa', 'Lsat_1_v5_gn_4_75761' => 'lsa', 'Lsat_1_v5_gn_5_10920' => 'lsa', 'Manes.02G099900' => 'mes', 'Manes.11G096200' => 'mes', 'Manes.12G007200' => 'mes', 'Manes.14G048300' => 'mes', 'Manes.17G114700' => 'mes', 'Mapoly0002s0070' => 'mpo', 'Mapoly0029s0099' => 'mpo', 'MBI07_g24742_MAGBIO' => 'mbi', 'MBI10_g27988_MAGBIO' => 'mbi', 'MBI11_g13057_MAGBIO' => 'mbi', 'MD02G1137200' => 'mdo', 'MD06G1137200' => 'mdo', 'MD07G1122300' => 'mdo', 'MD09G1078200' => 'mdo', 'MD13G1123700' => 'mdo', 'MD14G1151900' => 'mdo', 'MD17G1030900' => 'mdo', 'MD17G1068200' => 'mdo', 'MD17G1068600' => 'mdo', 'Medtr3g077540' => 'mtr', 'Medtr4g105530' => 'mtr', 'Medtr8g076580' => 'mtr', 'Medtr8g076590' => 'mtr', 'Medtr8g096410' => 'mtr', 'MELO3C016411.2' => 'cme', 'MELO3C017780.2' => 'cme', 'MELO3C022560.2' => 'cme', 'MELO3C026187.2' => 'cme', 'MELO3C026286.2' => 'cme', 'MELO3C032854.2' => 'cme', 'Migut.H02495' => 'egut', 'Migut.I00561' => 'egut', 'Migut.K01015' => 'egut', 'Migut.K01016' => 'egut', 'Migut.L00743' => 'egut', 'Migut.L00744' => 'egut', 'Migut.L00746' => 'egut', 'Migut.L00798' => 'egut', 'Migut.L00799' => 'egut', 'Migut.N02096' => 'egut', 'MSTRG.11259' => 'ama', 'MSTRG.23142' => 'ama', 'MSTRG.2499' => 'ama', 'Nitab4.5_0000003g0730' => 'nta', 'Nitab4.5_0000137g0020' => 'nta', 'Nitab4.5_0000721g0210' => 'nta', 'Nitab4.5_0000723g0050' => 'nta', 'Nitab4.5_0000913g0070' => 'nta', 'Nitab4.5_0001332g0040' => 'nta', 'Nitab4.5_0001771g0050' => 'nta', 'Nitab4.5_0001918g0050' => 'nta', 'Nitab4.5_0002686g0030' => 'nta', 'Nitab4.5_0003156g0020' => 'nta', 'Nitab4.5_0003383g0040' => 'nta', 'Nitab4.5_0003918g0010' => 'nta', 'Nitab4.5_0006760g0010' => 'nta', 'Nn1g05981' => 'nnu', 'Nn1g06288' => 'nnu', 'Nn3g16371' => 'nnu', 'Nn3g16786' => 'nnu', 'Nn4g22232' => 'nnu', 'Oeu005144.1' => 'oeu', 'Oeu005145.1' => 'oeu', 'Oeu011348.1' => 'oeu', 'Oeu016415.1' => 'oeu', 'Oeu023501.1' => 'oeu', 'Oeu044473.1' => 'oeu', 'Oeu048892.2' => 'oeu', 'Os01g0549200' => 'osa', 'Os02g0469300' => 'osa', 'Os04g0311100' => 'osa', 'Os06g0474900' => 'osa', 'Os10g0181700' => 'osa', 'Os11g0454800' => 'osa', 'Peaxi162Scf00037g00714' => 'pax', 'Peaxi162Scf00084g01217' => 'pax', 'Peaxi162Scf00257g00217' => 'pax', 'Peaxi162Scf00516g00215' => 'pax', 'Peaxi162Scf00689g00123' => 'pax', 'PGR044G2719' => 'pgr', 'PGR083G1360' => 'pgr', 'PGR102G2849' => 'pgr', 'PGR119G2534' => 'pgr', 'PGSC0003DMG400003538' => 'stu', 'PGSC0003DMG400028138' => 'stu', 'PGSC0003DMG400031732' => 'stu', 'PGSC0003DMG400038165' => 'stu', 'Phvul.002G284600' => 'pvu', 'Phvul.003G258200' => 'pvu', 'Phvul.009G176500' => 'pvu', 'Potri.003G167201' => 'ptr', 'Potri.005G118400' => 'ptr', 'Potri.012G089000' => 'ptr', 'Potri.012G102800' => 'ptr', 'Potri.015G079400' => 'ptr', 'Potri.015G100900' => 'ptr', 'Pp3c14_9810' => 'ppa', 'Pp3c15_10450' => 'ppa', 'Pp3c20_19150' => 'ppa', 'Pp3c23_12740' => 'ppa', 'Pp3c23_6310' => 'ppa', 'Pp3c24_3720' => 'ppa', 'Pp3c27_2580' => 'ppa', 'Pp3c9_8990' => 'ppa', 'PRCOL_00002854' => 'pco', 'Prupe.1G221200' => 'ppe', 'Prupe.3G289000' => 'ppe', 'Prupe.5G147000' => 'ppe', 'Prupe.6G157300' => 'ppe', 'Prupe.7G163400' => 'ppe', 'Psat0s2177g0040' => 'psa', 'Psat3g174760' => 'psa', 'Psat3g192160' => 'psa', 'Psat4g058520' => 'psa', 'Psat4g096840' => 'psa', 'Psat7g037320' => 'psa', 'PSO017G1274' => 'pso', 'PSO017G5166' => 'pso', 'PSO063G4558' => 'pso', 'PSO170G4458' => 'pso', 'PSO170G5005' => 'pso', 'PSO210G6156' => 'pso', 'PSO210G6635' => 'pso', 'PSO210G7397' => 'pso', 'PSO210G7700' => 'pso', 'PSO455G0035' => 'pso', 'PSO455G0180' => 'pso', 'PSO478G4515' => 'pso', 'PSO832G1305' => 'pso', 'PSO832G3489' => 'pso', 'QL02p075247' => 'qlo', 'QL03p051148' => 'qlo', 'QL05p010313' => 'qlo', 'QL06p034627' => 'qlo', 'QL10p001889' => 'qlo', 'QL10p010846' => 'qlo', 'RcHm_v2.0_Chr1g0350621' => 'rch', 'RcHm_v2.0_Chr1g0350641' => 'rch', 'RcHm_v2.0_Chr2g0092891' => 'rch', 'RcHm_v2.0_Chr2g0100251' => 'rch', 'RcHm_v2.0_Chr2g0158661' => 'rch', 'RcHm_v2.0_Chr2g0172741' => 'rch', 'RcHm_v2.0_Chr4g0429571' => 'rch', 'RcHm_v2.0_Chr5g0042471' => 'rch', 'RcHm_v2.0_Chr7g0189451' => 'rch', 'Rhsim08G0052000' => 'rsi', 'Rhsim08G0174400' => 'rsi', 'Rhsim08G0193200' => 'rsi', 'Rhsim10G0214800' => 'rsi', 'Rhsim10G0214900' => 'rsi', 'Rhsim10G0215000' => 'rsi', 'Rhsim12G0022900' => 'rsi', 'Rhsim12G0177500' => 'rsi', 'Rhsim12G0177700' => 'rsi', 'Sabra03G0122600' => 'sbr', 'Sabra05G0097400' => 'sbr', 'Sabra12G0064100' => 'sbr', 'Sabra15G0121300' => 'sbr', 'SalBow2G0642' => 'sbo', 'SalBow5G2667' => 'sbo', 'SalBow5G4873' => 'sbo', 'SalBow8G2395' => 'sbo', 'Sc03g0003290' => 'sci', 'Sc10g0010130' => 'sci', 'Sc22g0003650' => 'sci', 'Sed0001603' => 'sed', 'Sed0004259' => 'sed', 'Sed0006789' => 'sed', 'Sed0011838' => 'sed', 'Sed0012964' => 'sed', 'Sed0016383' => 'sed', 'Sed0019010' => 'sed', 'Sed0020188' => 'sed', 'SEGI_04702' => 'sgi', 'SEGI_17231' => 'sgi', 'SEGI_18877' => 'sgi', 'SEGI_25196' => 'sgi', 'SEGI_25515' => 'sgi', 'SEGI_28445' => 'sgi', 'SEGI_37452' => 'sgi', 'SGA_v2.0_scaffold188G40336' => 'sas', 'SGA_v2.0_scaffold228G43247' => 'sas', 'SGA_v2.0_scaffold280G46853' => 'sas', 'SGA_v2.0_scaffold34G13808' => 'sas', 'SGA_v2.0_scaffold40G15576' => 'sas', 'SGA_v2.0_scaffold611G53188' => 'sas', 'SGA_v2.0_scaffold78G25461' => 'sas', 'SGA_v2.0_scaffold90G27888' => 'sas', 'SHI08601' => 'shi', 'SHI08606' => 'shi', 'SHI17117' => 'shi', 'SHI17119' => 'shi', 'SMO118G0201' => 'smo', 'SMO169G0247' => 'smo', 'SMO176G0006' => 'smo', 'SMO176G0015' => 'smo', 'SMO202G0006' => 'smo', 'SMO240G0050' => 'smo', 'SMO286G0009' => 'smo', 'SMO338G0033' => 'smo', 'SMO356G0533' => 'smo', 'SMO364G0382' => 'smo', 'SMO367G0166' => 'smo', 'SMO367G1098' => 'smo', 'Solyc01g009920.3' => 'sly', 'Solyc01g099300.3' => 'sly', 'Solyc02g084700.3' => 'sly', 'Solyc03g097520.3' => 'sly', 'Solyc06g071580.3' => 'sly', 'Solyc10g081760.3' => 'sly', 'Sopen01g005480' => 'spe', 'Sopen01g042850' => 'spe', 'Sopen02g029370' => 'spe', 'Sopen03g028280' => 'spe', 'Sopen06g027870' => 'spe', 'Sopen10g032270' => 'spe', 'Sp5g18180' => 'spa', 'Sp6g12880' => 'spa', 'Sp6g30850' => 'spa', 'Sp7g22960' => 'spa', 'Sp7g34010' => 'spa', 'SpUn1326_0010' => 'spa', 'TAR371G0242' => 'tar', 'TAR622G0638' => 'tar', 'TAR628G1548' => 'tar', 'TAR629G1079' => 'tar', 'TAR629G3413' => 'tar', 'THA.LOC104804249' => 'tha', 'THA.LOC104808315' => 'tha', 'THA.LOC104809238' => 'tha', 'THA.LOC104825484' => 'tha', 'Thecc.01G025500' => 'tca', 'Thecc.03G015800' => 'tca', 'Thecc.03G018000' => 'tca', 'Thecc.03G134800' => 'tca', 'Thecc.04G014700' => 'tca', 'Thhalv10006991m.g' => 'esa', 'Thhalv10012707m.g' => 'esa', 'Thhalv10015739m.g' => 'esa', 'Thhalv10024553m.g' => 'esa', 'Thhalv10024673m.g' => 'esa', 'Thhalv10029187m.g' => 'esa', 'TPR.G12971' => 'tpr', 'TPR.G29396' => 'tpr', 'TPR.G33376' => 'tpr', 'TPR.G35508' => 'tpr', 'TPR.G35516' => 'tpr', 'TPR.G37317' => 'tpr', 'TPR.G37389' => 'tpr', 'TPR.G37523' => 'tpr', 'TPR.G559' => 'tpr', 'TWI14G0070' => 'twi', 'TWI14G0729' => 'twi', 'TWI18G0596' => 'twi', 'TWI39G0780' => 'twi', 'TWI39G0850' => 'twi', 'TWI73G1052' => 'twi', 'unitig_52.g17485' => 'ugi', 'unitig_61.g26355' => 'ugi', 'vmacro01040' => 'vma', 'vmacro16731' => 'vma', 'vmacro18270' => 'vma', 'vmacro19142' => 'vma', 'vmacro19407' => 'vma', 'vmacro19408' => 'vma', 'vmacro21899' => 'vma', 'vmacro21900' => 'vma', 'vmacro21901' => 'vma', 'VMungo0251G0490' => 'vmu', 'VMungo0251G1748' => 'vmu', 'VMungo1309G0421' => 'vmu', 'Zm00001eb086500' => 'zma', 'Zm00001eb150680' => 'zma', 'Zm00001eb162330' => 'zma', 'Zm00001eb203130' => 'zma', 'Zm00001eb369480' => 'zma', 'Zm00001eb382340' => 'zma', 'Zm00001eb416360' => 'zma' ), 'gf_id' => 'HOM05D000902', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000902' ), 'data_identifier' => 'HOM05D000902', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000902', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '663', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02470' => 'bna', 'A01p16260' => 'bna', 'A02p01680' => 'bna', 'A03p16600' => 'bna', 'A03p55660' => 'bna', 'A03p64160' => 'bna', 'A03p64170' => 'bna', 'A08p31900' => 'bna', 'A09p59530' => 'bna', 'A10p08230' => 'bna', 'A10p25090' => 'bna', 'Aa31LG3G7100' => 'aar', 'Aa31LG3G7110' => 'aar', 'Aa31LG6G13160' => 'aar', 'Aa31LG7G10770' => 'aar', 'Aa31LG7G3830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2723' => 'aag', 'Actinidia08045' => 'ach', 'Actinidia08888' => 'ach', 'Actinidia18333' => 'ach', 'Actinidia19334' => 'ach', 'Actinidia25552' => 'ach', 'Actinidia26089' => 'ach', 'Actinidia30615' => 'ach', 'Actinidia30616' => 'ach', 'Actinidia33083' => 'ach', 'Actinidia35762' => 'ach', 'Ah.02g110620' => 'amhyb', 'Ah.11g046390' => 'amhyb', 'AL1G31670' => 'aly', 'AL6G23730' => 'aly', 'AL7G14740' => 'aly', 'AL7G14750' => 'aly', 'AL7G14760' => 'aly', 'AL7G28220' => 'aly', 'AL8G24940' => 'aly', 'Aqoxy3G01665' => 'aox', 'Aqoxy3G02853' => 'aox', 'Aqoxy5G01513' => 'aox', 'Aqoxy5G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8SKA4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ75LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKDA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0LJZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7REX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZP4YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWX7I5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2QKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS0L9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPCD8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q161UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC7XCF' => 'arhy', 'AT1G19100' => 'ath', 'AT4G24970' => 'ath', 'AT4G36270' => 'ath', 'AT4G36280' => 'ath', 'AT4G36290' => 'ath', 'AT5G13130' => 'ath', 'AT5G50780' => 'ath', 'ATR0582G266' => 'atr', 'ATR0661G195' => 'atr', 'ATR1152G031' => 'atr', 'Atru.chr11.2382' => 'acertr', 'Atru.chr12.2337' => 'acertr', 'Atru.chr3.744' => 'acertr', 'Atru.chr6.1870' => 'acertr', 'Atru.chr9.2515' => 'acertr', 'AUR62004120' => 'cqu', 'AUR62005667' => 'cqu', 'AUR62007634' => 'cqu', 'AUR62008186' => 'cqu', 'AUR62008187' => 'cqu', 'AUR62008188' => 'cqu', 'AUR62027954' => 'cqu', 'AUR62028766' => 'cqu', 'AUR62028767' => 'cqu', 'AUR62028768' => 'cqu', 'AUR62028886' => 'cqu', 'AUR62029563' => 'cqu', 'AUR62038832' => 'cqu', 'BcaB01g04149' => 'bca', 'BcaB03g12940' => 'bca', 'BcaB03g13090' => 'bca', 'BcaB03g14466' => 'bca', 'BcaB05g24035' => 'bca', 'BcaC01g06050' => 'bca', 'BcaC04g19148' => 'bca', 'BcaC04g20761' => 'bca', 'BcaC06g32845' => 'bca', 'BcaC07g41274' => 'bca', 'BcaC09g50827' => 'bca', 'BcaNung00741' => 'bca', 'BcaNung00742' => 'bca', 'BcaNung01859' => 'bca', 'BcaNung03985' => 'bca', 'BcaNung03989' => 'bca', 'BcaNung05661' => 'bca', 'BolC1t00257H' => 'bol', 'BolC1t01956H' => 'bol', 'BolC2t06534H' => 'bol', 'BolC3t14334H' => 'bol', 'BolC5t30451H' => 'bol', 'BolC7t45880H' => 'bol', 'BolC7t46586H' => 'bol', 'BolC8t49301H' => 'bol', 'BolC8t51837H' => 'bol', 'BolC9t56822H' => 'bol', 'BolC9t59235H' => 'bol', 'BraA01t00234Z' => 'bra', 'BraA01t01563Z' => 'bra', 'BraA02t05147Z' => 'bra', 'BraA03t10947Z' => 'bra', 'BraA03t14633Z' => 'bra', 'BraA08t35112Z' => 'bra', 'BraA09t41330Z' => 'bra', 'BraA10t44570Z' => 'bra', 'C01p02670' => 'bna', 'C01p20260' => 'bna', 'C02p05890' => 'bna', 'C03p19530' => 'bna', 'C05p17470' => 'bna', 'C07p53900' => 'bna', 'C07p61630' => 'bna', 'C08p16800' => 'bna', 'C08p42810' => 'bna', 'C09p39480' => 'bna', 'C09p63980' => 'bna', 'CAN.G1001.7' => 'can', 'CAN.G1034.55' => 'can', 'CAN.G143.7' => 'can', 'CAN.G3340.1' => 'can', 'CAN.G358.19' => 'can', 'CAN.G373.2' => 'can', 'CAN.G674.16' => 'can', 'CAN.G674.17' => 'can', 'CAN.G674.18' => 'can', 'CAN.G732.2' => 'can', 'CAN.G732.3' => 'can', 'CAN.G993.39' => 'can', 'CANSAT01G2052' => 'cansat', 'CANSAT80G0070' => 'cansat', 'CANSAT80G0483' => 'cansat', 'CANSAT80G0625' => 'cansat', 'CARHR019690' => 'chi', 'CARHR080280' => 'chi', 'CARHR152750' => 'chi', 'CARHR152760' => 'chi', 'CARHR152770' => 'chi', 'CARHR200340' => 'chi', 'CARHR232370' => 'chi', 'CARHR244670' => 'chi', 'CARHR244680' => 'chi', 'CARHR257520' => 'chi', 'Carub.0001s1872' => 'cru', 'Carub.0006s1130' => 'cru', 'Carub.0007s0396' => 'cru', 'Carub.0007s0397' => 'cru', 'Carub.0007s1608' => 'cru', 'Carub.0008s1068' => 'cru', 'Carub.0008s1077' => 'cru', 'Ca_16158_v3' => 'car', 'Ca_17571_v3' => 'car', 'Ca_21936_v3' => 'car', 'Ca_22350_v3' => 'car', 'CBR_g22445' => 'cbr', 'CBR_g26290' => 'cbr', 'Cc04_g09610' => 'ccan', 'Cc04_g12280' => 'ccan', 'Cc07_g10230' => 'ccan', 'CDE02G0093' => 'cde', 'CDE02G0701' => 'cde', 'CDE04G1050' => 'cde', 'CDE05G1833' => 'cde', 'CDE05G3058' => 'cde', 'CDE05G3380' => 'cde', 'CDE06G0536' => 'cde', 'Cfa006923' => 'cfa', 'Cfa009402' => 'cfa', 'Cfa018751' => 'cfa', 'Cfa019164' => 'cfa', 'Cfa022935' => 'cfa', 'Ciclev10019081m.g' => 'ccl', 'Ciclev10025076m.g' => 'ccl', 'Ciclev10030712m.g' => 'ccl', 'Ciclev10033760m.g' => 'ccl', 'CiPaw.05G105600' => 'cil', 'CiPaw.08G136700' => 'cil', 'CiPaw.11G003900' => 'cil', 'CiPaw.11G023700' => 'cil', 'CiPaw.12G003700' => 'cil', 'ClCG06G017100' => 'cla', 'ClCG06G018110' => 'cla', 'ClCG07G008800' => 'cla', 'ClCG07G015330' => 'cla', 'COL.COLO4_13698' => 'col', 'COL.COLO4_16659' => 'col', 'COL.COLO4_21986' => 'col', 'COL.COLO4_24049' => 'col', 'COL.COLO4_29061' => 'col', 'COL.COLO4_29075' => 'col', 'COL.COLO4_30094' => 'col', 'Cpa.g.c33689' => 'cpa', 'Cpa.g.sc108.39' => 'cpa', 'Cpa.g.sc108.41' => 'cpa', 'Cpa.g.sc1163.1' => 'cpa', 'Cpa.g.sc4.155' => 'cpa', 'Cpa.g.sc6.194' => 'cpa', 'CsaV3_1G000340' => 'csa', 'CsaV3_1G001400' => 'csa', 'CsaV3_4G002220' => 'csa', 'CsaV3_4G005370' => 'csa', 'CSS0007487' => 'camsi', 'CSS0008066' => 'camsi', 'CSS0009120' => 'camsi', 'CSS0015512' => 'camsi', 'CSS0022409' => 'camsi', 'CSS0025358' => 'camsi', 'CSS0044547' => 'camsi', 'DCAR_013057' => 'dca', 'DCAR_015058' => 'dca', 'DCAR_016027' => 'dca', 'DCAR_017327' => 'dca', 'DCAR_020743' => 'dca', 'DCAR_026157' => 'dca', 'DCAR_032339' => 'dca', 'DCAR_032340' => 'dca', 'Dinv11200' => 'din', 'Dinv11201' => 'din', 'Dinv20631' => 'din', 'Dinv23182' => 'din', 'Dinv33466' => 'din', 'Dinv33583' => 'din', 'Dinv38565' => 'din', 'Duzib068G0200' => 'dzi', 'Duzib147G0132' => 'dzi', 'Duzib147G0635' => 'dzi', 'Duzib205G1670' => 'dzi', 'Duzib251G0606' => 'dzi', 'ECA232G3336' => 'eca', 'ECA232G3763' => 'eca', 'ECA232G4845' => 'eca', 'ECA234G1607' => 'eca', 'ECA246G0932' => 'eca', 'ECA247G0781' => 'eca', 'ECA247G1932' => 'eca', 'ECA247G2079' => 'eca', 'ECA247G3338' => 'eca', 'ECA247G4115' => 'eca', 'EL10Ac3g06552' => 'bvu', 'EL10Ac5g10721' => 'bvu', 'EL10Ac5g10722' => 'bvu', 'EL10Ac5g10723' => 'bvu', 'EL10Ac5g11361' => 'bvu', 'EL10Ac6g13553' => 'bvu', 'EL10As8g23872' => 'bvu', 'Eucgr.B00250' => 'egr', 'Eucgr.B00251' => 'egr', 'Eucgr.B03533' => 'egr', 'Eucgr.I02381' => 'egr', 'Eucgr.K02700' => 'egr', 'FAN02G0174' => 'fan', 'FAN02G3146' => 'fan', 'FAN04G1672' => 'fan', 'FAN04G2273' => 'fan', 'FAN05G2791' => 'fan', 'FAN05G4035' => 'fan', 'FAN07G0834' => 'fan', 'FAN08G1198' => 'fan', 'FAN09G4182' => 'fan', 'FAN12G0496' => 'fan', 'FAN13G1027' => 'fan', 'FAN13G2951' => 'fan', 'FAN14G0705' => 'fan', 'FAN14G0720' => 'fan', 'FAN17G0201' => 'fan', 'FAN17G2665' => 'fan', 'FAN18G1456' => 'fan', 'FAN18G1525' => 'fan', 'FAN18G3500' => 'fan', 'FAN28G2670' => 'fan', 'FvH4_1g12391' => 'fve', 'FvH4_4g23220' => 'fve', 'FvH4_5g08810' => 'fve', 'FvH4_5g28960' => 'fve', 'FvH4_6g42820' => 'fve', 'FvH4_6g51110' => 'fve', 'Glyma.02G051802' => 'gma', 'Glyma.04G185300' => 'gma', 'Glyma.05G202900' => 'gma', 'Glyma.08G010300' => 'gma', 'Glyma.16G131900' => 'gma', 'Glyma.17G087900' => 'gma', 'Gohir.A07G048600' => 'ghi', 'Gohir.A11G179000' => 'ghi', 'Gohir.A12G140900' => 'ghi', 'Gohir.A12G140950' => 'ghi', 'Gohir.A12G191700' => 'ghi', 'Gohir.A13G086300' => 'ghi', 'Gohir.D07G052900' => 'ghi', 'Gohir.D11G186600' => 'ghi', 'Gohir.D12G145575' => 'ghi', 'Gohir.D12G145650' => 'ghi', 'Gohir.D12G145725' => 'ghi', 'Gohir.D12G194050' => 'ghi', 'Gohir.D13G091800' => 'ghi', 'Gorai.001G055900' => 'gra', 'Gorai.007G198400' => 'gra', 'Gorai.008G157000' => 'gra', 'Gorai.008G157100' => 'gra', 'Gorai.008G208700' => 'gra', 'Gorai.010G138700' => 'gra', 'GSVIVG01000977001' => 'vvi', 'GSVIVG01007708001' => 'vvi', 'GSVIVG01008587001' => 'vvi', 'GSVIVG01018849001' => 'vvi', 'GSVIVG01032432001' => 'vvi', 'HanXRQChr02g0034131' => 'han', 'HanXRQChr02g0035981' => 'han', 'HanXRQChr02g0035991' => 'han', 'HanXRQChr05g0155611' => 'han', 'HanXRQChr05g0155621' => 'han', 'HanXRQChr08g0236501' => 'han', 'HanXRQChr09g0261321' => 'han', 'HanXRQChr09g0272081' => 'han', 'HanXRQChr10g0310741' => 'han', 'HanXRQChr11g0325591' => 'han', 'HanXRQChr12g0385691' => 'han', 'HanXRQChr13g0387801' => 'han', 'HanXRQChr15g0463011' => 'han', 'Haze_03826' => 'cav', 'Haze_03827' => 'cav', 'Haze_07183' => 'cav', 'Haze_07537' => 'cav', 'Haze_07539' => 'cav', 'Haze_12461' => 'cav', 'Haze_16115' => 'cav', 'Haze_16808' => 'cav', 'Haze_18531' => 'cav', 'Hma1.2p1_0046F.1_g026700' => 'hma', 'Hma1.2p1_0046F.1_g026710' => 'hma', 'Hma1.2p1_0168F.1_g074340' => 'hma', 'Hma1.2p1_0266F.1_g107030' => 'hma', 'Hma1.2p1_0266F.1_g107060' => 'hma', 'Hma1.2p1_0275F.1_g110510' => 'hma', 'Hma1.2p1_0592F.1_g185490' => 'hma', 'Hma1.2p1_0592F.1_g185500' => 'hma', 'Hma1.2p1_0592F.1_g185510' => 'hma', 'Hma1.2p1_0592F.1_g185520' => 'hma', 'Hma1.2p1_0592F.1_g185530' => 'hma', 'Hma1.2p1_0818F.1_g223450' => 'hma', 'HPP92_009708' => 'vpl', 'HPP92_009793' => 'vpl', 'HPP92_009796' => 'vpl', 'HPP92_009797' => 'vpl', 'HPP92_014940' => 'vpl', 'HPP92_014988' => 'vpl', 'Hund02463' => 'sun', 'Hund02760' => 'sun', 'Hund05071' => 'sun', 'Hund10108' => 'sun', 'Hund11204' => 'sun', 'Hund14016' => 'sun', 'Hund16464' => 'sun', 'Lalb_Chr09g0333391' => 'lal', 'Lalb_Chr11g0070461' => 'lal', 'Lalb_Chr12g0201671' => 'lal', 'Lalb_Chr13g0297161' => 'lal', 'Lj1g0002823' => 'lja', 'Lj3C1074T6' => 'lonja', 'Lj4A212T28' => 'lonja', 'Lj4g0005516' => 'lja', 'Lj4g0013705' => 'lja', 'Lj4g0027865' => 'lja', 'Lj5C92G16' => 'lonja', 'Lj5C92T12' => 'lonja', 'Lj7C596T3' => 'lonja', 'Lj9A446G59' => 'lonja', 'Lj9A482G21' => 'lonja', 'Lsat_1_v5_gn_1_28261' => 'lsa', 'Lsat_1_v5_gn_1_28281' => 'lsa', 'Lsat_1_v5_gn_1_32721' => 'lsa', 'Lsat_1_v5_gn_4_151760' => 'lsa', 'Lsat_1_v5_gn_4_2120' => 'lsa', 'Lsat_1_v5_gn_4_75761' => 'lsa', 'Lsat_1_v5_gn_5_10920' => 'lsa', 'Manes.02G099900' => 'mes', 'Manes.11G096200' => 'mes', 'Manes.12G007200' => 'mes', 'Manes.14G048300' => 'mes', 'Manes.17G114700' => 'mes', 'Mapoly0002s0070' => 'mpo', 'Mapoly0029s0099' => 'mpo', 'MBI07_g24742_MAGBIO' => 'mbi', 'MBI10_g27988_MAGBIO' => 'mbi', 'MBI11_g13057_MAGBIO' => 'mbi', 'MD02G1137200' => 'mdo', 'MD06G1137200' => 'mdo', 'MD07G1122300' => 'mdo', 'MD09G1078200' => 'mdo', 'MD13G1123700' => 'mdo', 'MD14G1151900' => 'mdo', 'MD17G1030900' => 'mdo', 'MD17G1068200' => 'mdo', 'MD17G1068600' => 'mdo', 'Medtr3g077540' => 'mtr', 'Medtr4g105530' => 'mtr', 'Medtr8g076580' => 'mtr', 'Medtr8g076590' => 'mtr', 'Medtr8g096410' => 'mtr', 'MELO3C016411.2' => 'cme', 'MELO3C017780.2' => 'cme', 'MELO3C022560.2' => 'cme', 'MELO3C026187.2' => 'cme', 'MELO3C026286.2' => 'cme', 'MELO3C032854.2' => 'cme', 'Migut.H02495' => 'egut', 'Migut.I00561' => 'egut', 'Migut.K01015' => 'egut', 'Migut.K01016' => 'egut', 'Migut.L00743' => 'egut', 'Migut.L00744' => 'egut', 'Migut.L00746' => 'egut', 'Migut.L00798' => 'egut', 'Migut.L00799' => 'egut', 'Migut.N02096' => 'egut', 'MSTRG.11259' => 'ama', 'MSTRG.23142' => 'ama', 'MSTRG.2499' => 'ama', 'Nitab4.5_0000003g0730' => 'nta', 'Nitab4.5_0000137g0020' => 'nta', 'Nitab4.5_0000721g0210' => 'nta', 'Nitab4.5_0000723g0050' => 'nta', 'Nitab4.5_0000913g0070' => 'nta', 'Nitab4.5_0001332g0040' => 'nta', 'Nitab4.5_0001771g0050' => 'nta', 'Nitab4.5_0001918g0050' => 'nta', 'Nitab4.5_0002686g0030' => 'nta', 'Nitab4.5_0003156g0020' => 'nta', 'Nitab4.5_0003383g0040' => 'nta', 'Nitab4.5_0003918g0010' => 'nta', 'Nitab4.5_0006760g0010' => 'nta', 'Nn1g05981' => 'nnu', 'Nn1g06288' => 'nnu', 'Nn3g16371' => 'nnu', 'Nn3g16786' => 'nnu', 'Nn4g22232' => 'nnu', 'Oeu005144.1' => 'oeu', 'Oeu005145.1' => 'oeu', 'Oeu011348.1' => 'oeu', 'Oeu016415.1' => 'oeu', 'Oeu023501.1' => 'oeu', 'Oeu044473.1' => 'oeu', 'Oeu048892.2' => 'oeu', 'Os01g0549200' => 'osa', 'Os02g0469300' => 'osa', 'Os04g0311100' => 'osa', 'Os06g0474900' => 'osa', 'Os10g0181700' => 'osa', 'Os11g0454800' => 'osa', 'Peaxi162Scf00037g00714' => 'pax', 'Peaxi162Scf00084g01217' => 'pax', 'Peaxi162Scf00257g00217' => 'pax', 'Peaxi162Scf00516g00215' => 'pax', 'Peaxi162Scf00689g00123' => 'pax', 'PGR044G2719' => 'pgr', 'PGR083G1360' => 'pgr', 'PGR102G2849' => 'pgr', 'PGR119G2534' => 'pgr', 'PGSC0003DMG400003538' => 'stu', 'PGSC0003DMG400028138' => 'stu', 'PGSC0003DMG400031732' => 'stu', 'PGSC0003DMG400038165' => 'stu', 'Phvul.002G284600' => 'pvu', 'Phvul.003G258200' => 'pvu', 'Phvul.009G176500' => 'pvu', 'Potri.003G167201' => 'ptr', 'Potri.005G118400' => 'ptr', 'Potri.012G089000' => 'ptr', 'Potri.012G102800' => 'ptr', 'Potri.015G079400' => 'ptr', 'Potri.015G100900' => 'ptr', 'Pp3c14_9810' => 'ppa', 'Pp3c15_10450' => 'ppa', 'Pp3c20_19150' => 'ppa', 'Pp3c23_12740' => 'ppa', 'Pp3c23_6310' => 'ppa', 'Pp3c24_3720' => 'ppa', 'Pp3c27_2580' => 'ppa', 'Pp3c9_8990' => 'ppa', 'PRCOL_00002854' => 'pco', 'Prupe.1G221200' => 'ppe', 'Prupe.3G289000' => 'ppe', 'Prupe.5G147000' => 'ppe', 'Prupe.6G157300' => 'ppe', 'Prupe.7G163400' => 'ppe', 'Psat0s2177g0040' => 'psa', 'Psat3g174760' => 'psa', 'Psat3g192160' => 'psa', 'Psat4g058520' => 'psa', 'Psat4g096840' => 'psa', 'Psat7g037320' => 'psa', 'PSO017G1274' => 'pso', 'PSO017G5166' => 'pso', 'PSO063G4558' => 'pso', 'PSO170G4458' => 'pso', 'PSO170G5005' => 'pso', 'PSO210G6156' => 'pso', 'PSO210G6635' => 'pso', 'PSO210G7397' => 'pso', 'PSO210G7700' => 'pso', 'PSO455G0035' => 'pso', 'PSO455G0180' => 'pso', 'PSO478G4515' => 'pso', 'PSO832G1305' => 'pso', 'PSO832G3489' => 'pso', 'QL02p075247' => 'qlo', 'QL03p051148' => 'qlo', 'QL05p010313' => 'qlo', 'QL06p034627' => 'qlo', 'QL10p001889' => 'qlo', 'QL10p010846' => 'qlo', 'RcHm_v2.0_Chr1g0350621' => 'rch', 'RcHm_v2.0_Chr1g0350641' => 'rch', 'RcHm_v2.0_Chr2g0092891' => 'rch', 'RcHm_v2.0_Chr2g0100251' => 'rch', 'RcHm_v2.0_Chr2g0158661' => 'rch', 'RcHm_v2.0_Chr2g0172741' => 'rch', 'RcHm_v2.0_Chr4g0429571' => 'rch', 'RcHm_v2.0_Chr5g0042471' => 'rch', 'RcHm_v2.0_Chr7g0189451' => 'rch', 'Rhsim08G0052000' => 'rsi', 'Rhsim08G0174400' => 'rsi', 'Rhsim08G0193200' => 'rsi', 'Rhsim10G0214800' => 'rsi', 'Rhsim10G0214900' => 'rsi', 'Rhsim10G0215000' => 'rsi', 'Rhsim12G0022900' => 'rsi', 'Rhsim12G0177500' => 'rsi', 'Rhsim12G0177700' => 'rsi', 'Sabra03G0122600' => 'sbr', 'Sabra05G0097400' => 'sbr', 'Sabra12G0064100' => 'sbr', 'Sabra15G0121300' => 'sbr', 'SalBow2G0642' => 'sbo', 'SalBow5G2667' => 'sbo', 'SalBow5G4873' => 'sbo', 'SalBow8G2395' => 'sbo', 'Sc03g0003290' => 'sci', 'Sc10g0010130' => 'sci', 'Sc22g0003650' => 'sci', 'Sed0001603' => 'sed', 'Sed0004259' => 'sed', 'Sed0006789' => 'sed', 'Sed0011838' => 'sed', 'Sed0012964' => 'sed', 'Sed0016383' => 'sed', 'Sed0019010' => 'sed', 'Sed0020188' => 'sed', 'SEGI_04702' => 'sgi', 'SEGI_17231' => 'sgi', 'SEGI_18877' => 'sgi', 'SEGI_25196' => 'sgi', 'SEGI_25515' => 'sgi', 'SEGI_28445' => 'sgi', 'SEGI_37452' => 'sgi', 'SGA_v2.0_scaffold188G40336' => 'sas', 'SGA_v2.0_scaffold228G43247' => 'sas', 'SGA_v2.0_scaffold280G46853' => 'sas', 'SGA_v2.0_scaffold34G13808' => 'sas', 'SGA_v2.0_scaffold40G15576' => 'sas', 'SGA_v2.0_scaffold611G53188' => 'sas', 'SGA_v2.0_scaffold78G25461' => 'sas', 'SGA_v2.0_scaffold90G27888' => 'sas', 'SHI08601' => 'shi', 'SHI08606' => 'shi', 'SHI17117' => 'shi', 'SHI17119' => 'shi', 'SMO118G0201' => 'smo', 'SMO169G0247' => 'smo', 'SMO176G0006' => 'smo', 'SMO176G0015' => 'smo', 'SMO202G0006' => 'smo', 'SMO240G0050' => 'smo', 'SMO286G0009' => 'smo', 'SMO338G0033' => 'smo', 'SMO356G0533' => 'smo', 'SMO364G0382' => 'smo', 'SMO367G0166' => 'smo', 'SMO367G1098' => 'smo', 'Solyc01g009920.3' => 'sly', 'Solyc01g099300.3' => 'sly', 'Solyc02g084700.3' => 'sly', 'Solyc03g097520.3' => 'sly', 'Solyc06g071580.3' => 'sly', 'Solyc10g081760.3' => 'sly', 'Sopen01g005480' => 'spe', 'Sopen01g042850' => 'spe', 'Sopen02g029370' => 'spe', 'Sopen03g028280' => 'spe', 'Sopen06g027870' => 'spe', 'Sopen10g032270' => 'spe', 'Sp5g18180' => 'spa', 'Sp6g12880' => 'spa', 'Sp6g30850' => 'spa', 'Sp7g22960' => 'spa', 'Sp7g34010' => 'spa', 'SpUn1326_0010' => 'spa', 'TAR371G0242' => 'tar', 'TAR622G0638' => 'tar', 'TAR628G1548' => 'tar', 'TAR629G1079' => 'tar', 'TAR629G3413' => 'tar', 'THA.LOC104804249' => 'tha', 'THA.LOC104808315' => 'tha', 'THA.LOC104809238' => 'tha', 'THA.LOC104825484' => 'tha', 'Thecc.01G025500' => 'tca', 'Thecc.03G015800' => 'tca', 'Thecc.03G018000' => 'tca', 'Thecc.03G134800' => 'tca', 'Thecc.04G014700' => 'tca', 'Thhalv10006991m.g' => 'esa', 'Thhalv10012707m.g' => 'esa', 'Thhalv10015739m.g' => 'esa', 'Thhalv10024553m.g' => 'esa', 'Thhalv10024673m.g' => 'esa', 'Thhalv10029187m.g' => 'esa', 'TPR.G12971' => 'tpr', 'TPR.G29396' => 'tpr', 'TPR.G33376' => 'tpr', 'TPR.G35508' => 'tpr', 'TPR.G35516' => 'tpr', 'TPR.G37317' => 'tpr', 'TPR.G37389' => 'tpr', 'TPR.G37523' => 'tpr', 'TPR.G559' => 'tpr', 'TWI14G0070' => 'twi', 'TWI14G0729' => 'twi', 'TWI18G0596' => 'twi', 'TWI39G0780' => 'twi', 'TWI39G0850' => 'twi', 'TWI73G1052' => 'twi', 'unitig_52.g17485' => 'ugi', 'unitig_61.g26355' => 'ugi', 'vmacro01040' => 'vma', 'vmacro16731' => 'vma', 'vmacro18270' => 'vma', 'vmacro19142' => 'vma', 'vmacro19407' => 'vma', 'vmacro19408' => 'vma', 'vmacro21899' => 'vma', 'vmacro21900' => 'vma', 'vmacro21901' => 'vma', 'VMungo0251G0490' => 'vmu', 'VMungo0251G1748' => 'vmu', 'VMungo1309G0421' => 'vmu', 'Zm00001eb086500' => 'zma', 'Zm00001eb150680' => 'zma', 'Zm00001eb162330' => 'zma', 'Zm00001eb203130' => 'zma', 'Zm00001eb369480' => 'zma', 'Zm00001eb382340' => 'zma', 'Zm00001eb416360' => 'zma' ) $gf_id = 'HOM05D000902' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000902' ) $data_identifier = 'HOM05D000902' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 13, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 10, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 6, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 9, 'hma' => (int) 12, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 4, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 6, 'ppa' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 6, 'rch' => (int) 9, 'rsi' => (int) 9, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 12, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 3, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416360' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000902', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '663', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02470' => 'bna', 'A01p16260' => 'bna', 'A02p01680' => 'bna', 'A03p16600' => 'bna', 'A03p55660' => 'bna', 'A03p64160' => 'bna', 'A03p64170' => 'bna', 'A08p31900' => 'bna', 'A09p59530' => 'bna', 'A10p08230' => 'bna', 'A10p25090' => 'bna', 'Aa31LG3G7100' => 'aar', 'Aa31LG3G7110' => 'aar', 'Aa31LG6G13160' => 'aar', 'Aa31LG7G10770' => 'aar', 'Aa31LG7G3830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2723' => 'aag', 'Actinidia08045' => 'ach', 'Actinidia08888' => 'ach', 'Actinidia18333' => 'ach', 'Actinidia19334' => 'ach', 'Actinidia25552' => 'ach', 'Actinidia26089' => 'ach', 'Actinidia30615' => 'ach', 'Actinidia30616' => 'ach', 'Actinidia33083' => 'ach', 'Actinidia35762' => 'ach', 'Ah.02g110620' => 'amhyb', 'Ah.11g046390' => 'amhyb', 'AL1G31670' => 'aly', 'AL6G23730' => 'aly', 'AL7G14740' => 'aly', 'AL7G14750' => 'aly', 'AL7G14760' => 'aly', 'AL7G28220' => 'aly', 'AL8G24940' => 'aly', 'Aqoxy3G01665' => 'aox', 'Aqoxy3G02853' => 'aox', 'Aqoxy5G01513' => 'aox', 'Aqoxy5G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8SKA4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ75LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKDA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0LJZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7REX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZP4YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWX7I5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2QKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS0L9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPCD8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q161UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC7XCF' => 'arhy', 'AT1G19100' => 'ath', 'AT4G24970' => 'ath', 'AT4G36270' => 'ath', 'AT4G36280' => 'ath', 'AT4G36290' => 'ath', 'AT5G13130' => 'ath', 'AT5G50780' => 'ath', 'ATR0582G266' => 'atr', 'ATR0661G195' => 'atr', 'ATR1152G031' => 'atr', 'Atru.chr11.2382' => 'acertr', 'Atru.chr12.2337' => 'acertr', 'Atru.chr3.744' => 'acertr', 'Atru.chr6.1870' => 'acertr', 'Atru.chr9.2515' => 'acertr', 'AUR62004120' => 'cqu', 'AUR62005667' => 'cqu', 'AUR62007634' => 'cqu', 'AUR62008186' => 'cqu', 'AUR62008187' => 'cqu', 'AUR62008188' => 'cqu', 'AUR62027954' => 'cqu', 'AUR62028766' => 'cqu', 'AUR62028767' => 'cqu', 'AUR62028768' => 'cqu', 'AUR62028886' => 'cqu', 'AUR62029563' => 'cqu', 'AUR62038832' => 'cqu', 'BcaB01g04149' => 'bca', 'BcaB03g12940' => 'bca', 'BcaB03g13090' => 'bca', 'BcaB03g14466' => 'bca', 'BcaB05g24035' => 'bca', 'BcaC01g06050' => 'bca', 'BcaC04g19148' => 'bca', 'BcaC04g20761' => 'bca', 'BcaC06g32845' => 'bca', 'BcaC07g41274' => 'bca', 'BcaC09g50827' => 'bca', 'BcaNung00741' => 'bca', 'BcaNung00742' => 'bca', 'BcaNung01859' => 'bca', 'BcaNung03985' => 'bca', 'BcaNung03989' => 'bca', 'BcaNung05661' => 'bca', 'BolC1t00257H' => 'bol', 'BolC1t01956H' => 'bol', 'BolC2t06534H' => 'bol', 'BolC3t14334H' => 'bol', 'BolC5t30451H' => 'bol', 'BolC7t45880H' => 'bol', 'BolC7t46586H' => 'bol', 'BolC8t49301H' => 'bol', 'BolC8t51837H' => 'bol', 'BolC9t56822H' => 'bol', 'BolC9t59235H' => 'bol', 'BraA01t00234Z' => 'bra', 'BraA01t01563Z' => 'bra', 'BraA02t05147Z' => 'bra', 'BraA03t10947Z' => 'bra', 'BraA03t14633Z' => 'bra', 'BraA08t35112Z' => 'bra', 'BraA09t41330Z' => 'bra', 'BraA10t44570Z' => 'bra', 'C01p02670' => 'bna', 'C01p20260' => 'bna', 'C02p05890' => 'bna', 'C03p19530' => 'bna', 'C05p17470' => 'bna', 'C07p53900' => 'bna', 'C07p61630' => 'bna', 'C08p16800' => 'bna', 'C08p42810' => 'bna', 'C09p39480' => 'bna', 'C09p63980' => 'bna', 'CAN.G1001.7' => 'can', 'CAN.G1034.55' => 'can', 'CAN.G143.7' => 'can', 'CAN.G3340.1' => 'can', 'CAN.G358.19' => 'can', 'CAN.G373.2' => 'can', 'CAN.G674.16' => 'can', 'CAN.G674.17' => 'can', 'CAN.G674.18' => 'can', 'CAN.G732.2' => 'can', 'CAN.G732.3' => 'can', 'CAN.G993.39' => 'can', 'CANSAT01G2052' => 'cansat', 'CANSAT80G0070' => 'cansat', 'CANSAT80G0483' => 'cansat', 'CANSAT80G0625' => 'cansat', 'CARHR019690' => 'chi', 'CARHR080280' => 'chi', 'CARHR152750' => 'chi', 'CARHR152760' => 'chi', 'CARHR152770' => 'chi', 'CARHR200340' => 'chi', 'CARHR232370' => 'chi', 'CARHR244670' => 'chi', 'CARHR244680' => 'chi', 'CARHR257520' => 'chi', 'Carub.0001s1872' => 'cru', 'Carub.0006s1130' => 'cru', 'Carub.0007s0396' => 'cru', 'Carub.0007s0397' => 'cru', 'Carub.0007s1608' => 'cru', 'Carub.0008s1068' => 'cru', 'Carub.0008s1077' => 'cru', 'Ca_16158_v3' => 'car', 'Ca_17571_v3' => 'car', 'Ca_21936_v3' => 'car', 'Ca_22350_v3' => 'car', 'CBR_g22445' => 'cbr', 'CBR_g26290' => 'cbr', 'Cc04_g09610' => 'ccan', 'Cc04_g12280' => 'ccan', 'Cc07_g10230' => 'ccan', 'CDE02G0093' => 'cde', 'CDE02G0701' => 'cde', 'CDE04G1050' => 'cde', 'CDE05G1833' => 'cde', 'CDE05G3058' => 'cde', 'CDE05G3380' => 'cde', 'CDE06G0536' => 'cde', 'Cfa006923' => 'cfa', 'Cfa009402' => 'cfa', 'Cfa018751' => 'cfa', 'Cfa019164' => 'cfa', 'Cfa022935' => 'cfa', 'Ciclev10019081m.g' => 'ccl', 'Ciclev10025076m.g' => 'ccl', 'Ciclev10030712m.g' => 'ccl', 'Ciclev10033760m.g' => 'ccl', 'CiPaw.05G105600' => 'cil', 'CiPaw.08G136700' => 'cil', 'CiPaw.11G003900' => 'cil', 'CiPaw.11G023700' => 'cil', 'CiPaw.12G003700' => 'cil', 'ClCG06G017100' => 'cla', 'ClCG06G018110' => 'cla', 'ClCG07G008800' => 'cla', 'ClCG07G015330' => 'cla', 'COL.COLO4_13698' => 'col', 'COL.COLO4_16659' => 'col', 'COL.COLO4_21986' => 'col', 'COL.COLO4_24049' => 'col', 'COL.COLO4_29061' => 'col', 'COL.COLO4_29075' => 'col', 'COL.COLO4_30094' => 'col', 'Cpa.g.c33689' => 'cpa', 'Cpa.g.sc108.39' => 'cpa', 'Cpa.g.sc108.41' => 'cpa', 'Cpa.g.sc1163.1' => 'cpa', 'Cpa.g.sc4.155' => 'cpa', 'Cpa.g.sc6.194' => 'cpa', 'CsaV3_1G000340' => 'csa', 'CsaV3_1G001400' => 'csa', 'CsaV3_4G002220' => 'csa', 'CsaV3_4G005370' => 'csa', 'CSS0007487' => 'camsi', 'CSS0008066' => 'camsi', 'CSS0009120' => 'camsi', 'CSS0015512' => 'camsi', 'CSS0022409' => 'camsi', 'CSS0025358' => 'camsi', 'CSS0044547' => 'camsi', 'DCAR_013057' => 'dca', 'DCAR_015058' => 'dca', 'DCAR_016027' => 'dca', 'DCAR_017327' => 'dca', 'DCAR_020743' => 'dca', 'DCAR_026157' => 'dca', 'DCAR_032339' => 'dca', 'DCAR_032340' => 'dca', 'Dinv11200' => 'din', 'Dinv11201' => 'din', 'Dinv20631' => 'din', 'Dinv23182' => 'din', 'Dinv33466' => 'din', 'Dinv33583' => 'din', 'Dinv38565' => 'din', 'Duzib068G0200' => 'dzi', 'Duzib147G0132' => 'dzi', 'Duzib147G0635' => 'dzi', 'Duzib205G1670' => 'dzi', 'Duzib251G0606' => 'dzi', 'ECA232G3336' => 'eca', 'ECA232G3763' => 'eca', 'ECA232G4845' => 'eca', 'ECA234G1607' => 'eca', 'ECA246G0932' => 'eca', 'ECA247G0781' => 'eca', 'ECA247G1932' => 'eca', 'ECA247G2079' => 'eca', 'ECA247G3338' => 'eca', 'ECA247G4115' => 'eca', 'EL10Ac3g06552' => 'bvu', 'EL10Ac5g10721' => 'bvu', 'EL10Ac5g10722' => 'bvu', 'EL10Ac5g10723' => 'bvu', 'EL10Ac5g11361' => 'bvu', 'EL10Ac6g13553' => 'bvu', 'EL10As8g23872' => 'bvu', 'Eucgr.B00250' => 'egr', 'Eucgr.B00251' => 'egr', 'Eucgr.B03533' => 'egr', 'Eucgr.I02381' => 'egr', 'Eucgr.K02700' => 'egr', 'FAN02G0174' => 'fan', 'FAN02G3146' => 'fan', 'FAN04G1672' => 'fan', 'FAN04G2273' => 'fan', 'FAN05G2791' => 'fan', 'FAN05G4035' => 'fan', 'FAN07G0834' => 'fan', 'FAN08G1198' => 'fan', 'FAN09G4182' => 'fan', 'FAN12G0496' => 'fan', 'FAN13G1027' => 'fan', 'FAN13G2951' => 'fan', 'FAN14G0705' => 'fan', 'FAN14G0720' => 'fan', 'FAN17G0201' => 'fan', 'FAN17G2665' => 'fan', 'FAN18G1456' => 'fan', 'FAN18G1525' => 'fan', 'FAN18G3500' => 'fan', 'FAN28G2670' => 'fan', 'FvH4_1g12391' => 'fve', 'FvH4_4g23220' => 'fve', 'FvH4_5g08810' => 'fve', 'FvH4_5g28960' => 'fve', 'FvH4_6g42820' => 'fve', 'FvH4_6g51110' => 'fve', 'Glyma.02G051802' => 'gma', 'Glyma.04G185300' => 'gma', 'Glyma.05G202900' => 'gma', 'Glyma.08G010300' => 'gma', 'Glyma.16G131900' => 'gma', 'Glyma.17G087900' => 'gma', 'Gohir.A07G048600' => 'ghi', 'Gohir.A11G179000' => 'ghi', 'Gohir.A12G140900' => 'ghi', 'Gohir.A12G140950' => 'ghi', 'Gohir.A12G191700' => 'ghi', 'Gohir.A13G086300' => 'ghi', 'Gohir.D07G052900' => 'ghi', 'Gohir.D11G186600' => 'ghi', 'Gohir.D12G145575' => 'ghi', 'Gohir.D12G145650' => 'ghi', 'Gohir.D12G145725' => 'ghi', 'Gohir.D12G194050' => 'ghi', 'Gohir.D13G091800' => 'ghi', 'Gorai.001G055900' => 'gra', 'Gorai.007G198400' => 'gra', 'Gorai.008G157000' => 'gra', 'Gorai.008G157100' => 'gra', 'Gorai.008G208700' => 'gra', 'Gorai.010G138700' => 'gra', 'GSVIVG01000977001' => 'vvi', 'GSVIVG01007708001' => 'vvi', 'GSVIVG01008587001' => 'vvi', 'GSVIVG01018849001' => 'vvi', 'GSVIVG01032432001' => 'vvi', 'HanXRQChr02g0034131' => 'han', 'HanXRQChr02g0035981' => 'han', 'HanXRQChr02g0035991' => 'han', 'HanXRQChr05g0155611' => 'han', 'HanXRQChr05g0155621' => 'han', 'HanXRQChr08g0236501' => 'han', 'HanXRQChr09g0261321' => 'han', 'HanXRQChr09g0272081' => 'han', 'HanXRQChr10g0310741' => 'han', 'HanXRQChr11g0325591' => 'han', 'HanXRQChr12g0385691' => 'han', 'HanXRQChr13g0387801' => 'han', 'HanXRQChr15g0463011' => 'han', 'Haze_03826' => 'cav', 'Haze_03827' => 'cav', 'Haze_07183' => 'cav', 'Haze_07537' => 'cav', 'Haze_07539' => 'cav', 'Haze_12461' => 'cav', 'Haze_16115' => 'cav', 'Haze_16808' => 'cav', 'Haze_18531' => 'cav', 'Hma1.2p1_0046F.1_g026700' => 'hma', 'Hma1.2p1_0046F.1_g026710' => 'hma', 'Hma1.2p1_0168F.1_g074340' => 'hma', 'Hma1.2p1_0266F.1_g107030' => 'hma', 'Hma1.2p1_0266F.1_g107060' => 'hma', 'Hma1.2p1_0275F.1_g110510' => 'hma', 'Hma1.2p1_0592F.1_g185490' => 'hma', 'Hma1.2p1_0592F.1_g185500' => 'hma', 'Hma1.2p1_0592F.1_g185510' => 'hma', 'Hma1.2p1_0592F.1_g185520' => 'hma', 'Hma1.2p1_0592F.1_g185530' => 'hma', 'Hma1.2p1_0818F.1_g223450' => 'hma', 'HPP92_009708' => 'vpl', 'HPP92_009793' => 'vpl', 'HPP92_009796' => 'vpl', 'HPP92_009797' => 'vpl', 'HPP92_014940' => 'vpl', 'HPP92_014988' => 'vpl', 'Hund02463' => 'sun', 'Hund02760' => 'sun', 'Hund05071' => 'sun', 'Hund10108' => 'sun', 'Hund11204' => 'sun', 'Hund14016' => 'sun', 'Hund16464' => 'sun', 'Lalb_Chr09g0333391' => 'lal', 'Lalb_Chr11g0070461' => 'lal', 'Lalb_Chr12g0201671' => 'lal', 'Lalb_Chr13g0297161' => 'lal', 'Lj1g0002823' => 'lja', 'Lj3C1074T6' => 'lonja', 'Lj4A212T28' => 'lonja', 'Lj4g0005516' => 'lja', 'Lj4g0013705' => 'lja', 'Lj4g0027865' => 'lja', 'Lj5C92G16' => 'lonja', 'Lj5C92T12' => 'lonja', 'Lj7C596T3' => 'lonja', 'Lj9A446G59' => 'lonja', 'Lj9A482G21' => 'lonja', 'Lsat_1_v5_gn_1_28261' => 'lsa', 'Lsat_1_v5_gn_1_28281' => 'lsa', 'Lsat_1_v5_gn_1_32721' => 'lsa', 'Lsat_1_v5_gn_4_151760' => 'lsa', 'Lsat_1_v5_gn_4_2120' => 'lsa', 'Lsat_1_v5_gn_4_75761' => 'lsa', 'Lsat_1_v5_gn_5_10920' => 'lsa', 'Manes.02G099900' => 'mes', 'Manes.11G096200' => 'mes', 'Manes.12G007200' => 'mes', 'Manes.14G048300' => 'mes', 'Manes.17G114700' => 'mes', 'Mapoly0002s0070' => 'mpo', 'Mapoly0029s0099' => 'mpo', 'MBI07_g24742_MAGBIO' => 'mbi', 'MBI10_g27988_MAGBIO' => 'mbi', 'MBI11_g13057_MAGBIO' => 'mbi', 'MD02G1137200' => 'mdo', 'MD06G1137200' => 'mdo', 'MD07G1122300' => 'mdo', 'MD09G1078200' => 'mdo', 'MD13G1123700' => 'mdo', 'MD14G1151900' => 'mdo', 'MD17G1030900' => 'mdo', 'MD17G1068200' => 'mdo', 'MD17G1068600' => 'mdo', 'Medtr3g077540' => 'mtr', 'Medtr4g105530' => 'mtr', 'Medtr8g076580' => 'mtr', 'Medtr8g076590' => 'mtr', 'Medtr8g096410' => 'mtr', 'MELO3C016411.2' => 'cme', 'MELO3C017780.2' => 'cme', 'MELO3C022560.2' => 'cme', 'MELO3C026187.2' => 'cme', 'MELO3C026286.2' => 'cme', 'MELO3C032854.2' => 'cme', 'Migut.H02495' => 'egut', 'Migut.I00561' => 'egut', 'Migut.K01015' => 'egut', 'Migut.K01016' => 'egut', 'Migut.L00743' => 'egut', 'Migut.L00744' => 'egut', 'Migut.L00746' => 'egut', 'Migut.L00798' => 'egut', 'Migut.L00799' => 'egut', 'Migut.N02096' => 'egut', 'MSTRG.11259' => 'ama', 'MSTRG.23142' => 'ama', 'MSTRG.2499' => 'ama', 'Nitab4.5_0000003g0730' => 'nta', 'Nitab4.5_0000137g0020' => 'nta', 'Nitab4.5_0000721g0210' => 'nta', 'Nitab4.5_0000723g0050' => 'nta', 'Nitab4.5_0000913g0070' => 'nta', 'Nitab4.5_0001332g0040' => 'nta', 'Nitab4.5_0001771g0050' => 'nta', 'Nitab4.5_0001918g0050' => 'nta', 'Nitab4.5_0002686g0030' => 'nta', 'Nitab4.5_0003156g0020' => 'nta', 'Nitab4.5_0003383g0040' => 'nta', 'Nitab4.5_0003918g0010' => 'nta', 'Nitab4.5_0006760g0010' => 'nta', 'Nn1g05981' => 'nnu', 'Nn1g06288' => 'nnu', 'Nn3g16371' => 'nnu', 'Nn3g16786' => 'nnu', 'Nn4g22232' => 'nnu', 'Oeu005144.1' => 'oeu', 'Oeu005145.1' => 'oeu', 'Oeu011348.1' => 'oeu', 'Oeu016415.1' => 'oeu', 'Oeu023501.1' => 'oeu', 'Oeu044473.1' => 'oeu', 'Oeu048892.2' => 'oeu', 'Os01g0549200' => 'osa', 'Os02g0469300' => 'osa', 'Os04g0311100' => 'osa', 'Os06g0474900' => 'osa', 'Os10g0181700' => 'osa', 'Os11g0454800' => 'osa', 'Peaxi162Scf00037g00714' => 'pax', 'Peaxi162Scf00084g01217' => 'pax', 'Peaxi162Scf00257g00217' => 'pax', 'Peaxi162Scf00516g00215' => 'pax', 'Peaxi162Scf00689g00123' => 'pax', 'PGR044G2719' => 'pgr', 'PGR083G1360' => 'pgr', 'PGR102G2849' => 'pgr', 'PGR119G2534' => 'pgr', 'PGSC0003DMG400003538' => 'stu', 'PGSC0003DMG400028138' => 'stu', 'PGSC0003DMG400031732' => 'stu', 'PGSC0003DMG400038165' => 'stu', 'Phvul.002G284600' => 'pvu', 'Phvul.003G258200' => 'pvu', 'Phvul.009G176500' => 'pvu', 'Potri.003G167201' => 'ptr', 'Potri.005G118400' => 'ptr', 'Potri.012G089000' => 'ptr', 'Potri.012G102800' => 'ptr', 'Potri.015G079400' => 'ptr', 'Potri.015G100900' => 'ptr', 'Pp3c14_9810' => 'ppa', 'Pp3c15_10450' => 'ppa', 'Pp3c20_19150' => 'ppa', 'Pp3c23_12740' => 'ppa', 'Pp3c23_6310' => 'ppa', 'Pp3c24_3720' => 'ppa', 'Pp3c27_2580' => 'ppa', 'Pp3c9_8990' => 'ppa', 'PRCOL_00002854' => 'pco', 'Prupe.1G221200' => 'ppe', 'Prupe.3G289000' => 'ppe', 'Prupe.5G147000' => 'ppe', 'Prupe.6G157300' => 'ppe', 'Prupe.7G163400' => 'ppe', 'Psat0s2177g0040' => 'psa', 'Psat3g174760' => 'psa', 'Psat3g192160' => 'psa', 'Psat4g058520' => 'psa', 'Psat4g096840' => 'psa', 'Psat7g037320' => 'psa', 'PSO017G1274' => 'pso', 'PSO017G5166' => 'pso', 'PSO063G4558' => 'pso', 'PSO170G4458' => 'pso', 'PSO170G5005' => 'pso', 'PSO210G6156' => 'pso', 'PSO210G6635' => 'pso', 'PSO210G7397' => 'pso', 'PSO210G7700' => 'pso', 'PSO455G0035' => 'pso', 'PSO455G0180' => 'pso', 'PSO478G4515' => 'pso', 'PSO832G1305' => 'pso', 'PSO832G3489' => 'pso', 'QL02p075247' => 'qlo', 'QL03p051148' => 'qlo', 'QL05p010313' => 'qlo', 'QL06p034627' => 'qlo', 'QL10p001889' => 'qlo', 'QL10p010846' => 'qlo', 'RcHm_v2.0_Chr1g0350621' => 'rch', 'RcHm_v2.0_Chr1g0350641' => 'rch', 'RcHm_v2.0_Chr2g0092891' => 'rch', 'RcHm_v2.0_Chr2g0100251' => 'rch', 'RcHm_v2.0_Chr2g0158661' => 'rch', 'RcHm_v2.0_Chr2g0172741' => 'rch', 'RcHm_v2.0_Chr4g0429571' => 'rch', 'RcHm_v2.0_Chr5g0042471' => 'rch', 'RcHm_v2.0_Chr7g0189451' => 'rch', 'Rhsim08G0052000' => 'rsi', 'Rhsim08G0174400' => 'rsi', 'Rhsim08G0193200' => 'rsi', 'Rhsim10G0214800' => 'rsi', 'Rhsim10G0214900' => 'rsi', 'Rhsim10G0215000' => 'rsi', 'Rhsim12G0022900' => 'rsi', 'Rhsim12G0177500' => 'rsi', 'Rhsim12G0177700' => 'rsi', 'Sabra03G0122600' => 'sbr', 'Sabra05G0097400' => 'sbr', 'Sabra12G0064100' => 'sbr', 'Sabra15G0121300' => 'sbr', 'SalBow2G0642' => 'sbo', 'SalBow5G2667' => 'sbo', 'SalBow5G4873' => 'sbo', 'SalBow8G2395' => 'sbo', 'Sc03g0003290' => 'sci', 'Sc10g0010130' => 'sci', 'Sc22g0003650' => 'sci', 'Sed0001603' => 'sed', 'Sed0004259' => 'sed', 'Sed0006789' => 'sed', 'Sed0011838' => 'sed', 'Sed0012964' => 'sed', 'Sed0016383' => 'sed', 'Sed0019010' => 'sed', 'Sed0020188' => 'sed', 'SEGI_04702' => 'sgi', 'SEGI_17231' => 'sgi', 'SEGI_18877' => 'sgi', 'SEGI_25196' => 'sgi', 'SEGI_25515' => 'sgi', 'SEGI_28445' => 'sgi', 'SEGI_37452' => 'sgi', 'SGA_v2.0_scaffold188G40336' => 'sas', 'SGA_v2.0_scaffold228G43247' => 'sas', 'SGA_v2.0_scaffold280G46853' => 'sas', 'SGA_v2.0_scaffold34G13808' => 'sas', 'SGA_v2.0_scaffold40G15576' => 'sas', 'SGA_v2.0_scaffold611G53188' => 'sas', 'SGA_v2.0_scaffold78G25461' => 'sas', 'SGA_v2.0_scaffold90G27888' => 'sas', 'SHI08601' => 'shi', 'SHI08606' => 'shi', 'SHI17117' => 'shi', 'SHI17119' => 'shi', 'SMO118G0201' => 'smo', 'SMO169G0247' => 'smo', 'SMO176G0006' => 'smo', 'SMO176G0015' => 'smo', 'SMO202G0006' => 'smo', 'SMO240G0050' => 'smo', 'SMO286G0009' => 'smo', 'SMO338G0033' => 'smo', 'SMO356G0533' => 'smo', 'SMO364G0382' => 'smo', 'SMO367G0166' => 'smo', 'SMO367G1098' => 'smo', 'Solyc01g009920.3' => 'sly', 'Solyc01g099300.3' => 'sly', 'Solyc02g084700.3' => 'sly', 'Solyc03g097520.3' => 'sly', 'Solyc06g071580.3' => 'sly', 'Solyc10g081760.3' => 'sly', 'Sopen01g005480' => 'spe', 'Sopen01g042850' => 'spe', 'Sopen02g029370' => 'spe', 'Sopen03g028280' => 'spe', 'Sopen06g027870' => 'spe', 'Sopen10g032270' => 'spe', 'Sp5g18180' => 'spa', 'Sp6g12880' => 'spa', 'Sp6g30850' => 'spa', 'Sp7g22960' => 'spa', 'Sp7g34010' => 'spa', 'SpUn1326_0010' => 'spa', 'TAR371G0242' => 'tar', 'TAR622G0638' => 'tar', 'TAR628G1548' => 'tar', 'TAR629G1079' => 'tar', 'TAR629G3413' => 'tar', 'THA.LOC104804249' => 'tha', 'THA.LOC104808315' => 'tha', 'THA.LOC104809238' => 'tha', 'THA.LOC104825484' => 'tha', 'Thecc.01G025500' => 'tca', 'Thecc.03G015800' => 'tca', 'Thecc.03G018000' => 'tca', 'Thecc.03G134800' => 'tca', 'Thecc.04G014700' => 'tca', 'Thhalv10006991m.g' => 'esa', 'Thhalv10012707m.g' => 'esa', 'Thhalv10015739m.g' => 'esa', 'Thhalv10024553m.g' => 'esa', 'Thhalv10024673m.g' => 'esa', 'Thhalv10029187m.g' => 'esa', 'TPR.G12971' => 'tpr', 'TPR.G29396' => 'tpr', 'TPR.G33376' => 'tpr', 'TPR.G35508' => 'tpr', 'TPR.G35516' => 'tpr', 'TPR.G37317' => 'tpr', 'TPR.G37389' => 'tpr', 'TPR.G37523' => 'tpr', 'TPR.G559' => 'tpr', 'TWI14G0070' => 'twi', 'TWI14G0729' => 'twi', 'TWI18G0596' => 'twi', 'TWI39G0780' => 'twi', 'TWI39G0850' => 'twi', 'TWI73G1052' => 'twi', 'unitig_52.g17485' => 'ugi', 'unitig_61.g26355' => 'ugi', 'vmacro01040' => 'vma', 'vmacro16731' => 'vma', 'vmacro18270' => 'vma', 'vmacro19142' => 'vma', 'vmacro19407' => 'vma', 'vmacro19408' => 'vma', 'vmacro21899' => 'vma', 'vmacro21900' => 'vma', 'vmacro21901' => 'vma', 'VMungo0251G0490' => 'vmu', 'VMungo0251G1748' => 'vmu', 'VMungo1309G0421' => 'vmu', 'Zm00001eb086500' => 'zma', 'Zm00001eb150680' => 'zma', 'Zm00001eb162330' => 'zma', 'Zm00001eb203130' => 'zma', 'Zm00001eb369480' => 'zma', 'Zm00001eb382340' => 'zma', 'Zm00001eb416360' => 'zma' ), 'gf_id' => 'HOM05D000902', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000902' ), 'data_identifier' => 'HOM05D000902', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000902', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '663', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02470' => 'bna', 'A01p16260' => 'bna', 'A02p01680' => 'bna', 'A03p16600' => 'bna', 'A03p55660' => 'bna', 'A03p64160' => 'bna', 'A03p64170' => 'bna', 'A08p31900' => 'bna', 'A09p59530' => 'bna', 'A10p08230' => 'bna', 'A10p25090' => 'bna', 'Aa31LG3G7100' => 'aar', 'Aa31LG3G7110' => 'aar', 'Aa31LG6G13160' => 'aar', 'Aa31LG7G10770' => 'aar', 'Aa31LG7G3830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2723' => 'aag', 'Actinidia08045' => 'ach', 'Actinidia08888' => 'ach', 'Actinidia18333' => 'ach', 'Actinidia19334' => 'ach', 'Actinidia25552' => 'ach', 'Actinidia26089' => 'ach', 'Actinidia30615' => 'ach', 'Actinidia30616' => 'ach', 'Actinidia33083' => 'ach', 'Actinidia35762' => 'ach', 'Ah.02g110620' => 'amhyb', 'Ah.11g046390' => 'amhyb', 'AL1G31670' => 'aly', 'AL6G23730' => 'aly', 'AL7G14740' => 'aly', 'AL7G14750' => 'aly', 'AL7G14760' => 'aly', 'AL7G28220' => 'aly', 'AL8G24940' => 'aly', 'Aqoxy3G01665' => 'aox', 'Aqoxy3G02853' => 'aox', 'Aqoxy5G01513' => 'aox', 'Aqoxy5G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8SKA4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ75LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKDA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0LJZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7REX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZP4YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWX7I5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2QKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS0L9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPCD8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q161UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC7XCF' => 'arhy', 'AT1G19100' => 'ath', 'AT4G24970' => 'ath', 'AT4G36270' => 'ath', 'AT4G36280' => 'ath', 'AT4G36290' => 'ath', 'AT5G13130' => 'ath', 'AT5G50780' => 'ath', 'ATR0582G266' => 'atr', 'ATR0661G195' => 'atr', 'ATR1152G031' => 'atr', 'Atru.chr11.2382' => 'acertr', 'Atru.chr12.2337' => 'acertr', 'Atru.chr3.744' => 'acertr', 'Atru.chr6.1870' => 'acertr', 'Atru.chr9.2515' => 'acertr', 'AUR62004120' => 'cqu', 'AUR62005667' => 'cqu', 'AUR62007634' => 'cqu', 'AUR62008186' => 'cqu', 'AUR62008187' => 'cqu', 'AUR62008188' => 'cqu', 'AUR62027954' => 'cqu', 'AUR62028766' => 'cqu', 'AUR62028767' => 'cqu', 'AUR62028768' => 'cqu', 'AUR62028886' => 'cqu', 'AUR62029563' => 'cqu', 'AUR62038832' => 'cqu', 'BcaB01g04149' => 'bca', 'BcaB03g12940' => 'bca', 'BcaB03g13090' => 'bca', 'BcaB03g14466' => 'bca', 'BcaB05g24035' => 'bca', 'BcaC01g06050' => 'bca', 'BcaC04g19148' => 'bca', 'BcaC04g20761' => 'bca', 'BcaC06g32845' => 'bca', 'BcaC07g41274' => 'bca', 'BcaC09g50827' => 'bca', 'BcaNung00741' => 'bca', 'BcaNung00742' => 'bca', 'BcaNung01859' => 'bca', 'BcaNung03985' => 'bca', 'BcaNung03989' => 'bca', 'BcaNung05661' => 'bca', 'BolC1t00257H' => 'bol', 'BolC1t01956H' => 'bol', 'BolC2t06534H' => 'bol', 'BolC3t14334H' => 'bol', 'BolC5t30451H' => 'bol', 'BolC7t45880H' => 'bol', 'BolC7t46586H' => 'bol', 'BolC8t49301H' => 'bol', 'BolC8t51837H' => 'bol', 'BolC9t56822H' => 'bol', 'BolC9t59235H' => 'bol', 'BraA01t00234Z' => 'bra', 'BraA01t01563Z' => 'bra', 'BraA02t05147Z' => 'bra', 'BraA03t10947Z' => 'bra', 'BraA03t14633Z' => 'bra', 'BraA08t35112Z' => 'bra', 'BraA09t41330Z' => 'bra', 'BraA10t44570Z' => 'bra', 'C01p02670' => 'bna', 'C01p20260' => 'bna', 'C02p05890' => 'bna', 'C03p19530' => 'bna', 'C05p17470' => 'bna', 'C07p53900' => 'bna', 'C07p61630' => 'bna', 'C08p16800' => 'bna', 'C08p42810' => 'bna', 'C09p39480' => 'bna', 'C09p63980' => 'bna', 'CAN.G1001.7' => 'can', 'CAN.G1034.55' => 'can', 'CAN.G143.7' => 'can', 'CAN.G3340.1' => 'can', 'CAN.G358.19' => 'can', 'CAN.G373.2' => 'can', 'CAN.G674.16' => 'can', 'CAN.G674.17' => 'can', 'CAN.G674.18' => 'can', 'CAN.G732.2' => 'can', 'CAN.G732.3' => 'can', 'CAN.G993.39' => 'can', 'CANSAT01G2052' => 'cansat', 'CANSAT80G0070' => 'cansat', 'CANSAT80G0483' => 'cansat', 'CANSAT80G0625' => 'cansat', 'CARHR019690' => 'chi', 'CARHR080280' => 'chi', 'CARHR152750' => 'chi', 'CARHR152760' => 'chi', 'CARHR152770' => 'chi', 'CARHR200340' => 'chi', 'CARHR232370' => 'chi', 'CARHR244670' => 'chi', 'CARHR244680' => 'chi', 'CARHR257520' => 'chi', 'Carub.0001s1872' => 'cru', 'Carub.0006s1130' => 'cru', 'Carub.0007s0396' => 'cru', 'Carub.0007s0397' => 'cru', 'Carub.0007s1608' => 'cru', 'Carub.0008s1068' => 'cru', 'Carub.0008s1077' => 'cru', 'Ca_16158_v3' => 'car', 'Ca_17571_v3' => 'car', 'Ca_21936_v3' => 'car', 'Ca_22350_v3' => 'car', 'CBR_g22445' => 'cbr', 'CBR_g26290' => 'cbr', 'Cc04_g09610' => 'ccan', 'Cc04_g12280' => 'ccan', 'Cc07_g10230' => 'ccan', 'CDE02G0093' => 'cde', 'CDE02G0701' => 'cde', 'CDE04G1050' => 'cde', 'CDE05G1833' => 'cde', 'CDE05G3058' => 'cde', 'CDE05G3380' => 'cde', 'CDE06G0536' => 'cde', 'Cfa006923' => 'cfa', 'Cfa009402' => 'cfa', 'Cfa018751' => 'cfa', 'Cfa019164' => 'cfa', 'Cfa022935' => 'cfa', 'Ciclev10019081m.g' => 'ccl', 'Ciclev10025076m.g' => 'ccl', 'Ciclev10030712m.g' => 'ccl', 'Ciclev10033760m.g' => 'ccl', 'CiPaw.05G105600' => 'cil', 'CiPaw.08G136700' => 'cil', 'CiPaw.11G003900' => 'cil', 'CiPaw.11G023700' => 'cil', 'CiPaw.12G003700' => 'cil', 'ClCG06G017100' => 'cla', 'ClCG06G018110' => 'cla', 'ClCG07G008800' => 'cla', 'ClCG07G015330' => 'cla', 'COL.COLO4_13698' => 'col', 'COL.COLO4_16659' => 'col', 'COL.COLO4_21986' => 'col', 'COL.COLO4_24049' => 'col', 'COL.COLO4_29061' => 'col', 'COL.COLO4_29075' => 'col', 'COL.COLO4_30094' => 'col', 'Cpa.g.c33689' => 'cpa', 'Cpa.g.sc108.39' => 'cpa', 'Cpa.g.sc108.41' => 'cpa', 'Cpa.g.sc1163.1' => 'cpa', 'Cpa.g.sc4.155' => 'cpa', 'Cpa.g.sc6.194' => 'cpa', 'CsaV3_1G000340' => 'csa', 'CsaV3_1G001400' => 'csa', 'CsaV3_4G002220' => 'csa', 'CsaV3_4G005370' => 'csa', 'CSS0007487' => 'camsi', 'CSS0008066' => 'camsi', 'CSS0009120' => 'camsi', 'CSS0015512' => 'camsi', 'CSS0022409' => 'camsi', 'CSS0025358' => 'camsi', 'CSS0044547' => 'camsi', 'DCAR_013057' => 'dca', 'DCAR_015058' => 'dca', 'DCAR_016027' => 'dca', 'DCAR_017327' => 'dca', 'DCAR_020743' => 'dca', 'DCAR_026157' => 'dca', 'DCAR_032339' => 'dca', 'DCAR_032340' => 'dca', 'Dinv11200' => 'din', 'Dinv11201' => 'din', 'Dinv20631' => 'din', 'Dinv23182' => 'din', 'Dinv33466' => 'din', 'Dinv33583' => 'din', 'Dinv38565' => 'din', 'Duzib068G0200' => 'dzi', 'Duzib147G0132' => 'dzi', 'Duzib147G0635' => 'dzi', 'Duzib205G1670' => 'dzi', 'Duzib251G0606' => 'dzi', 'ECA232G3336' => 'eca', 'ECA232G3763' => 'eca', 'ECA232G4845' => 'eca', 'ECA234G1607' => 'eca', 'ECA246G0932' => 'eca', 'ECA247G0781' => 'eca', 'ECA247G1932' => 'eca', 'ECA247G2079' => 'eca', 'ECA247G3338' => 'eca', 'ECA247G4115' => 'eca', 'EL10Ac3g06552' => 'bvu', 'EL10Ac5g10721' => 'bvu', 'EL10Ac5g10722' => 'bvu', 'EL10Ac5g10723' => 'bvu', 'EL10Ac5g11361' => 'bvu', 'EL10Ac6g13553' => 'bvu', 'EL10As8g23872' => 'bvu', 'Eucgr.B00250' => 'egr', 'Eucgr.B00251' => 'egr', 'Eucgr.B03533' => 'egr', 'Eucgr.I02381' => 'egr', 'Eucgr.K02700' => 'egr', 'FAN02G0174' => 'fan', 'FAN02G3146' => 'fan', 'FAN04G1672' => 'fan', 'FAN04G2273' => 'fan', 'FAN05G2791' => 'fan', 'FAN05G4035' => 'fan', 'FAN07G0834' => 'fan', 'FAN08G1198' => 'fan', 'FAN09G4182' => 'fan', 'FAN12G0496' => 'fan', 'FAN13G1027' => 'fan', 'FAN13G2951' => 'fan', 'FAN14G0705' => 'fan', 'FAN14G0720' => 'fan', 'FAN17G0201' => 'fan', 'FAN17G2665' => 'fan', 'FAN18G1456' => 'fan', 'FAN18G1525' => 'fan', 'FAN18G3500' => 'fan', 'FAN28G2670' => 'fan', 'FvH4_1g12391' => 'fve', 'FvH4_4g23220' => 'fve', 'FvH4_5g08810' => 'fve', 'FvH4_5g28960' => 'fve', 'FvH4_6g42820' => 'fve', 'FvH4_6g51110' => 'fve', 'Glyma.02G051802' => 'gma', 'Glyma.04G185300' => 'gma', 'Glyma.05G202900' => 'gma', 'Glyma.08G010300' => 'gma', 'Glyma.16G131900' => 'gma', 'Glyma.17G087900' => 'gma', 'Gohir.A07G048600' => 'ghi', 'Gohir.A11G179000' => 'ghi', 'Gohir.A12G140900' => 'ghi', 'Gohir.A12G140950' => 'ghi', 'Gohir.A12G191700' => 'ghi', 'Gohir.A13G086300' => 'ghi', 'Gohir.D07G052900' => 'ghi', 'Gohir.D11G186600' => 'ghi', 'Gohir.D12G145575' => 'ghi', 'Gohir.D12G145650' => 'ghi', 'Gohir.D12G145725' => 'ghi', 'Gohir.D12G194050' => 'ghi', 'Gohir.D13G091800' => 'ghi', 'Gorai.001G055900' => 'gra', 'Gorai.007G198400' => 'gra', 'Gorai.008G157000' => 'gra', 'Gorai.008G157100' => 'gra', 'Gorai.008G208700' => 'gra', 'Gorai.010G138700' => 'gra', 'GSVIVG01000977001' => 'vvi', 'GSVIVG01007708001' => 'vvi', 'GSVIVG01008587001' => 'vvi', 'GSVIVG01018849001' => 'vvi', 'GSVIVG01032432001' => 'vvi', 'HanXRQChr02g0034131' => 'han', 'HanXRQChr02g0035981' => 'han', 'HanXRQChr02g0035991' => 'han', 'HanXRQChr05g0155611' => 'han', 'HanXRQChr05g0155621' => 'han', 'HanXRQChr08g0236501' => 'han', 'HanXRQChr09g0261321' => 'han', 'HanXRQChr09g0272081' => 'han', 'HanXRQChr10g0310741' => 'han', 'HanXRQChr11g0325591' => 'han', 'HanXRQChr12g0385691' => 'han', 'HanXRQChr13g0387801' => 'han', 'HanXRQChr15g0463011' => 'han', 'Haze_03826' => 'cav', 'Haze_03827' => 'cav', 'Haze_07183' => 'cav', 'Haze_07537' => 'cav', 'Haze_07539' => 'cav', 'Haze_12461' => 'cav', 'Haze_16115' => 'cav', 'Haze_16808' => 'cav', 'Haze_18531' => 'cav', 'Hma1.2p1_0046F.1_g026700' => 'hma', 'Hma1.2p1_0046F.1_g026710' => 'hma', 'Hma1.2p1_0168F.1_g074340' => 'hma', 'Hma1.2p1_0266F.1_g107030' => 'hma', 'Hma1.2p1_0266F.1_g107060' => 'hma', 'Hma1.2p1_0275F.1_g110510' => 'hma', 'Hma1.2p1_0592F.1_g185490' => 'hma', 'Hma1.2p1_0592F.1_g185500' => 'hma', 'Hma1.2p1_0592F.1_g185510' => 'hma', 'Hma1.2p1_0592F.1_g185520' => 'hma', 'Hma1.2p1_0592F.1_g185530' => 'hma', 'Hma1.2p1_0818F.1_g223450' => 'hma', 'HPP92_009708' => 'vpl', 'HPP92_009793' => 'vpl', 'HPP92_009796' => 'vpl', 'HPP92_009797' => 'vpl', 'HPP92_014940' => 'vpl', 'HPP92_014988' => 'vpl', 'Hund02463' => 'sun', 'Hund02760' => 'sun', 'Hund05071' => 'sun', 'Hund10108' => 'sun', 'Hund11204' => 'sun', 'Hund14016' => 'sun', 'Hund16464' => 'sun', 'Lalb_Chr09g0333391' => 'lal', 'Lalb_Chr11g0070461' => 'lal', 'Lalb_Chr12g0201671' => 'lal', 'Lalb_Chr13g0297161' => 'lal', 'Lj1g0002823' => 'lja', 'Lj3C1074T6' => 'lonja', 'Lj4A212T28' => 'lonja', 'Lj4g0005516' => 'lja', 'Lj4g0013705' => 'lja', 'Lj4g0027865' => 'lja', 'Lj5C92G16' => 'lonja', 'Lj5C92T12' => 'lonja', 'Lj7C596T3' => 'lonja', 'Lj9A446G59' => 'lonja', 'Lj9A482G21' => 'lonja', 'Lsat_1_v5_gn_1_28261' => 'lsa', 'Lsat_1_v5_gn_1_28281' => 'lsa', 'Lsat_1_v5_gn_1_32721' => 'lsa', 'Lsat_1_v5_gn_4_151760' => 'lsa', 'Lsat_1_v5_gn_4_2120' => 'lsa', 'Lsat_1_v5_gn_4_75761' => 'lsa', 'Lsat_1_v5_gn_5_10920' => 'lsa', 'Manes.02G099900' => 'mes', 'Manes.11G096200' => 'mes', 'Manes.12G007200' => 'mes', 'Manes.14G048300' => 'mes', 'Manes.17G114700' => 'mes', 'Mapoly0002s0070' => 'mpo', 'Mapoly0029s0099' => 'mpo', 'MBI07_g24742_MAGBIO' => 'mbi', 'MBI10_g27988_MAGBIO' => 'mbi', 'MBI11_g13057_MAGBIO' => 'mbi', 'MD02G1137200' => 'mdo', 'MD06G1137200' => 'mdo', 'MD07G1122300' => 'mdo', 'MD09G1078200' => 'mdo', 'MD13G1123700' => 'mdo', 'MD14G1151900' => 'mdo', 'MD17G1030900' => 'mdo', 'MD17G1068200' => 'mdo', 'MD17G1068600' => 'mdo', 'Medtr3g077540' => 'mtr', 'Medtr4g105530' => 'mtr', 'Medtr8g076580' => 'mtr', 'Medtr8g076590' => 'mtr', 'Medtr8g096410' => 'mtr', 'MELO3C016411.2' => 'cme', 'MELO3C017780.2' => 'cme', 'MELO3C022560.2' => 'cme', 'MELO3C026187.2' => 'cme', 'MELO3C026286.2' => 'cme', 'MELO3C032854.2' => 'cme', 'Migut.H02495' => 'egut', 'Migut.I00561' => 'egut', 'Migut.K01015' => 'egut', 'Migut.K01016' => 'egut', 'Migut.L00743' => 'egut', 'Migut.L00744' => 'egut', 'Migut.L00746' => 'egut', 'Migut.L00798' => 'egut', 'Migut.L00799' => 'egut', 'Migut.N02096' => 'egut', 'MSTRG.11259' => 'ama', 'MSTRG.23142' => 'ama', 'MSTRG.2499' => 'ama', 'Nitab4.5_0000003g0730' => 'nta', 'Nitab4.5_0000137g0020' => 'nta', 'Nitab4.5_0000721g0210' => 'nta', 'Nitab4.5_0000723g0050' => 'nta', 'Nitab4.5_0000913g0070' => 'nta', 'Nitab4.5_0001332g0040' => 'nta', 'Nitab4.5_0001771g0050' => 'nta', 'Nitab4.5_0001918g0050' => 'nta', 'Nitab4.5_0002686g0030' => 'nta', 'Nitab4.5_0003156g0020' => 'nta', 'Nitab4.5_0003383g0040' => 'nta', 'Nitab4.5_0003918g0010' => 'nta', 'Nitab4.5_0006760g0010' => 'nta', 'Nn1g05981' => 'nnu', 'Nn1g06288' => 'nnu', 'Nn3g16371' => 'nnu', 'Nn3g16786' => 'nnu', 'Nn4g22232' => 'nnu', 'Oeu005144.1' => 'oeu', 'Oeu005145.1' => 'oeu', 'Oeu011348.1' => 'oeu', 'Oeu016415.1' => 'oeu', 'Oeu023501.1' => 'oeu', 'Oeu044473.1' => 'oeu', 'Oeu048892.2' => 'oeu', 'Os01g0549200' => 'osa', 'Os02g0469300' => 'osa', 'Os04g0311100' => 'osa', 'Os06g0474900' => 'osa', 'Os10g0181700' => 'osa', 'Os11g0454800' => 'osa', 'Peaxi162Scf00037g00714' => 'pax', 'Peaxi162Scf00084g01217' => 'pax', 'Peaxi162Scf00257g00217' => 'pax', 'Peaxi162Scf00516g00215' => 'pax', 'Peaxi162Scf00689g00123' => 'pax', 'PGR044G2719' => 'pgr', 'PGR083G1360' => 'pgr', 'PGR102G2849' => 'pgr', 'PGR119G2534' => 'pgr', 'PGSC0003DMG400003538' => 'stu', 'PGSC0003DMG400028138' => 'stu', 'PGSC0003DMG400031732' => 'stu', 'PGSC0003DMG400038165' => 'stu', 'Phvul.002G284600' => 'pvu', 'Phvul.003G258200' => 'pvu', 'Phvul.009G176500' => 'pvu', 'Potri.003G167201' => 'ptr', 'Potri.005G118400' => 'ptr', 'Potri.012G089000' => 'ptr', 'Potri.012G102800' => 'ptr', 'Potri.015G079400' => 'ptr', 'Potri.015G100900' => 'ptr', 'Pp3c14_9810' => 'ppa', 'Pp3c15_10450' => 'ppa', 'Pp3c20_19150' => 'ppa', 'Pp3c23_12740' => 'ppa', 'Pp3c23_6310' => 'ppa', 'Pp3c24_3720' => 'ppa', 'Pp3c27_2580' => 'ppa', 'Pp3c9_8990' => 'ppa', 'PRCOL_00002854' => 'pco', 'Prupe.1G221200' => 'ppe', 'Prupe.3G289000' => 'ppe', 'Prupe.5G147000' => 'ppe', 'Prupe.6G157300' => 'ppe', 'Prupe.7G163400' => 'ppe', 'Psat0s2177g0040' => 'psa', 'Psat3g174760' => 'psa', 'Psat3g192160' => 'psa', 'Psat4g058520' => 'psa', 'Psat4g096840' => 'psa', 'Psat7g037320' => 'psa', 'PSO017G1274' => 'pso', 'PSO017G5166' => 'pso', 'PSO063G4558' => 'pso', 'PSO170G4458' => 'pso', 'PSO170G5005' => 'pso', 'PSO210G6156' => 'pso', 'PSO210G6635' => 'pso', 'PSO210G7397' => 'pso', 'PSO210G7700' => 'pso', 'PSO455G0035' => 'pso', 'PSO455G0180' => 'pso', 'PSO478G4515' => 'pso', 'PSO832G1305' => 'pso', 'PSO832G3489' => 'pso', 'QL02p075247' => 'qlo', 'QL03p051148' => 'qlo', 'QL05p010313' => 'qlo', 'QL06p034627' => 'qlo', 'QL10p001889' => 'qlo', 'QL10p010846' => 'qlo', 'RcHm_v2.0_Chr1g0350621' => 'rch', 'RcHm_v2.0_Chr1g0350641' => 'rch', 'RcHm_v2.0_Chr2g0092891' => 'rch', 'RcHm_v2.0_Chr2g0100251' => 'rch', 'RcHm_v2.0_Chr2g0158661' => 'rch', 'RcHm_v2.0_Chr2g0172741' => 'rch', 'RcHm_v2.0_Chr4g0429571' => 'rch', 'RcHm_v2.0_Chr5g0042471' => 'rch', 'RcHm_v2.0_Chr7g0189451' => 'rch', 'Rhsim08G0052000' => 'rsi', 'Rhsim08G0174400' => 'rsi', 'Rhsim08G0193200' => 'rsi', 'Rhsim10G0214800' => 'rsi', 'Rhsim10G0214900' => 'rsi', 'Rhsim10G0215000' => 'rsi', 'Rhsim12G0022900' => 'rsi', 'Rhsim12G0177500' => 'rsi', 'Rhsim12G0177700' => 'rsi', 'Sabra03G0122600' => 'sbr', 'Sabra05G0097400' => 'sbr', 'Sabra12G0064100' => 'sbr', 'Sabra15G0121300' => 'sbr', 'SalBow2G0642' => 'sbo', 'SalBow5G2667' => 'sbo', 'SalBow5G4873' => 'sbo', 'SalBow8G2395' => 'sbo', 'Sc03g0003290' => 'sci', 'Sc10g0010130' => 'sci', 'Sc22g0003650' => 'sci', 'Sed0001603' => 'sed', 'Sed0004259' => 'sed', 'Sed0006789' => 'sed', 'Sed0011838' => 'sed', 'Sed0012964' => 'sed', 'Sed0016383' => 'sed', 'Sed0019010' => 'sed', 'Sed0020188' => 'sed', 'SEGI_04702' => 'sgi', 'SEGI_17231' => 'sgi', 'SEGI_18877' => 'sgi', 'SEGI_25196' => 'sgi', 'SEGI_25515' => 'sgi', 'SEGI_28445' => 'sgi', 'SEGI_37452' => 'sgi', 'SGA_v2.0_scaffold188G40336' => 'sas', 'SGA_v2.0_scaffold228G43247' => 'sas', 'SGA_v2.0_scaffold280G46853' => 'sas', 'SGA_v2.0_scaffold34G13808' => 'sas', 'SGA_v2.0_scaffold40G15576' => 'sas', 'SGA_v2.0_scaffold611G53188' => 'sas', 'SGA_v2.0_scaffold78G25461' => 'sas', 'SGA_v2.0_scaffold90G27888' => 'sas', 'SHI08601' => 'shi', 'SHI08606' => 'shi', 'SHI17117' => 'shi', 'SHI17119' => 'shi', 'SMO118G0201' => 'smo', 'SMO169G0247' => 'smo', 'SMO176G0006' => 'smo', 'SMO176G0015' => 'smo', 'SMO202G0006' => 'smo', 'SMO240G0050' => 'smo', 'SMO286G0009' => 'smo', 'SMO338G0033' => 'smo', 'SMO356G0533' => 'smo', 'SMO364G0382' => 'smo', 'SMO367G0166' => 'smo', 'SMO367G1098' => 'smo', 'Solyc01g009920.3' => 'sly', 'Solyc01g099300.3' => 'sly', 'Solyc02g084700.3' => 'sly', 'Solyc03g097520.3' => 'sly', 'Solyc06g071580.3' => 'sly', 'Solyc10g081760.3' => 'sly', 'Sopen01g005480' => 'spe', 'Sopen01g042850' => 'spe', 'Sopen02g029370' => 'spe', 'Sopen03g028280' => 'spe', 'Sopen06g027870' => 'spe', 'Sopen10g032270' => 'spe', 'Sp5g18180' => 'spa', 'Sp6g12880' => 'spa', 'Sp6g30850' => 'spa', 'Sp7g22960' => 'spa', 'Sp7g34010' => 'spa', 'SpUn1326_0010' => 'spa', 'TAR371G0242' => 'tar', 'TAR622G0638' => 'tar', 'TAR628G1548' => 'tar', 'TAR629G1079' => 'tar', 'TAR629G3413' => 'tar', 'THA.LOC104804249' => 'tha', 'THA.LOC104808315' => 'tha', 'THA.LOC104809238' => 'tha', 'THA.LOC104825484' => 'tha', 'Thecc.01G025500' => 'tca', 'Thecc.03G015800' => 'tca', 'Thecc.03G018000' => 'tca', 'Thecc.03G134800' => 'tca', 'Thecc.04G014700' => 'tca', 'Thhalv10006991m.g' => 'esa', 'Thhalv10012707m.g' => 'esa', 'Thhalv10015739m.g' => 'esa', 'Thhalv10024553m.g' => 'esa', 'Thhalv10024673m.g' => 'esa', 'Thhalv10029187m.g' => 'esa', 'TPR.G12971' => 'tpr', 'TPR.G29396' => 'tpr', 'TPR.G33376' => 'tpr', 'TPR.G35508' => 'tpr', 'TPR.G35516' => 'tpr', 'TPR.G37317' => 'tpr', 'TPR.G37389' => 'tpr', 'TPR.G37523' => 'tpr', 'TPR.G559' => 'tpr', 'TWI14G0070' => 'twi', 'TWI14G0729' => 'twi', 'TWI18G0596' => 'twi', 'TWI39G0780' => 'twi', 'TWI39G0850' => 'twi', 'TWI73G1052' => 'twi', 'unitig_52.g17485' => 'ugi', 'unitig_61.g26355' => 'ugi', 'vmacro01040' => 'vma', 'vmacro16731' => 'vma', 'vmacro18270' => 'vma', 'vmacro19142' => 'vma', 'vmacro19407' => 'vma', 'vmacro19408' => 'vma', 'vmacro21899' => 'vma', 'vmacro21900' => 'vma', 'vmacro21901' => 'vma', 'VMungo0251G0490' => 'vmu', 'VMungo0251G1748' => 'vmu', 'VMungo1309G0421' => 'vmu', 'Zm00001eb086500' => 'zma', 'Zm00001eb150680' => 'zma', 'Zm00001eb162330' => 'zma', 'Zm00001eb203130' => 'zma', 'Zm00001eb369480' => 'zma', 'Zm00001eb382340' => 'zma', 'Zm00001eb416360' => 'zma' ) $gf_id = 'HOM05D000902' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000902' ) $data_identifier = 'HOM05D000902' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 13, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 10, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 6, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 9, 'hma' => (int) 12, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 4, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 6, 'ppa' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 6, 'rch' => (int) 9, 'rsi' => (int) 9, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 12, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 3, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416360' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000902', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '663', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02470' => 'bna', 'A01p16260' => 'bna', 'A02p01680' => 'bna', 'A03p16600' => 'bna', 'A03p55660' => 'bna', 'A03p64160' => 'bna', 'A03p64170' => 'bna', 'A08p31900' => 'bna', 'A09p59530' => 'bna', 'A10p08230' => 'bna', 'A10p25090' => 'bna', 'Aa31LG3G7100' => 'aar', 'Aa31LG3G7110' => 'aar', 'Aa31LG6G13160' => 'aar', 'Aa31LG7G10770' => 'aar', 'Aa31LG7G3830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2723' => 'aag', 'Actinidia08045' => 'ach', 'Actinidia08888' => 'ach', 'Actinidia18333' => 'ach', 'Actinidia19334' => 'ach', 'Actinidia25552' => 'ach', 'Actinidia26089' => 'ach', 'Actinidia30615' => 'ach', 'Actinidia30616' => 'ach', 'Actinidia33083' => 'ach', 'Actinidia35762' => 'ach', 'Ah.02g110620' => 'amhyb', 'Ah.11g046390' => 'amhyb', 'AL1G31670' => 'aly', 'AL6G23730' => 'aly', 'AL7G14740' => 'aly', 'AL7G14750' => 'aly', 'AL7G14760' => 'aly', 'AL7G28220' => 'aly', 'AL8G24940' => 'aly', 'Aqoxy3G01665' => 'aox', 'Aqoxy3G02853' => 'aox', 'Aqoxy5G01513' => 'aox', 'Aqoxy5G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8SKA4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ75LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKDA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0LJZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7REX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZP4YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWX7I5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2QKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS0L9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPCD8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q161UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC7XCF' => 'arhy', 'AT1G19100' => 'ath', 'AT4G24970' => 'ath', 'AT4G36270' => 'ath', 'AT4G36280' => 'ath', 'AT4G36290' => 'ath', 'AT5G13130' => 'ath', 'AT5G50780' => 'ath', 'ATR0582G266' => 'atr', 'ATR0661G195' => 'atr', 'ATR1152G031' => 'atr', 'Atru.chr11.2382' => 'acertr', 'Atru.chr12.2337' => 'acertr', 'Atru.chr3.744' => 'acertr', 'Atru.chr6.1870' => 'acertr', 'Atru.chr9.2515' => 'acertr', 'AUR62004120' => 'cqu', 'AUR62005667' => 'cqu', 'AUR62007634' => 'cqu', 'AUR62008186' => 'cqu', 'AUR62008187' => 'cqu', 'AUR62008188' => 'cqu', 'AUR62027954' => 'cqu', 'AUR62028766' => 'cqu', 'AUR62028767' => 'cqu', 'AUR62028768' => 'cqu', 'AUR62028886' => 'cqu', 'AUR62029563' => 'cqu', 'AUR62038832' => 'cqu', 'BcaB01g04149' => 'bca', 'BcaB03g12940' => 'bca', 'BcaB03g13090' => 'bca', 'BcaB03g14466' => 'bca', 'BcaB05g24035' => 'bca', 'BcaC01g06050' => 'bca', 'BcaC04g19148' => 'bca', 'BcaC04g20761' => 'bca', 'BcaC06g32845' => 'bca', 'BcaC07g41274' => 'bca', 'BcaC09g50827' => 'bca', 'BcaNung00741' => 'bca', 'BcaNung00742' => 'bca', 'BcaNung01859' => 'bca', 'BcaNung03985' => 'bca', 'BcaNung03989' => 'bca', 'BcaNung05661' => 'bca', 'BolC1t00257H' => 'bol', 'BolC1t01956H' => 'bol', 'BolC2t06534H' => 'bol', 'BolC3t14334H' => 'bol', 'BolC5t30451H' => 'bol', 'BolC7t45880H' => 'bol', 'BolC7t46586H' => 'bol', 'BolC8t49301H' => 'bol', 'BolC8t51837H' => 'bol', 'BolC9t56822H' => 'bol', 'BolC9t59235H' => 'bol', 'BraA01t00234Z' => 'bra', 'BraA01t01563Z' => 'bra', 'BraA02t05147Z' => 'bra', 'BraA03t10947Z' => 'bra', 'BraA03t14633Z' => 'bra', 'BraA08t35112Z' => 'bra', 'BraA09t41330Z' => 'bra', 'BraA10t44570Z' => 'bra', 'C01p02670' => 'bna', 'C01p20260' => 'bna', 'C02p05890' => 'bna', 'C03p19530' => 'bna', 'C05p17470' => 'bna', 'C07p53900' => 'bna', 'C07p61630' => 'bna', 'C08p16800' => 'bna', 'C08p42810' => 'bna', 'C09p39480' => 'bna', 'C09p63980' => 'bna', 'CAN.G1001.7' => 'can', 'CAN.G1034.55' => 'can', 'CAN.G143.7' => 'can', 'CAN.G3340.1' => 'can', 'CAN.G358.19' => 'can', 'CAN.G373.2' => 'can', 'CAN.G674.16' => 'can', 'CAN.G674.17' => 'can', 'CAN.G674.18' => 'can', 'CAN.G732.2' => 'can', 'CAN.G732.3' => 'can', 'CAN.G993.39' => 'can', 'CANSAT01G2052' => 'cansat', 'CANSAT80G0070' => 'cansat', 'CANSAT80G0483' => 'cansat', 'CANSAT80G0625' => 'cansat', 'CARHR019690' => 'chi', 'CARHR080280' => 'chi', 'CARHR152750' => 'chi', 'CARHR152760' => 'chi', 'CARHR152770' => 'chi', 'CARHR200340' => 'chi', 'CARHR232370' => 'chi', 'CARHR244670' => 'chi', 'CARHR244680' => 'chi', 'CARHR257520' => 'chi', 'Carub.0001s1872' => 'cru', 'Carub.0006s1130' => 'cru', 'Carub.0007s0396' => 'cru', 'Carub.0007s0397' => 'cru', 'Carub.0007s1608' => 'cru', 'Carub.0008s1068' => 'cru', 'Carub.0008s1077' => 'cru', 'Ca_16158_v3' => 'car', 'Ca_17571_v3' => 'car', 'Ca_21936_v3' => 'car', 'Ca_22350_v3' => 'car', 'CBR_g22445' => 'cbr', 'CBR_g26290' => 'cbr', 'Cc04_g09610' => 'ccan', 'Cc04_g12280' => 'ccan', 'Cc07_g10230' => 'ccan', 'CDE02G0093' => 'cde', 'CDE02G0701' => 'cde', 'CDE04G1050' => 'cde', 'CDE05G1833' => 'cde', 'CDE05G3058' => 'cde', 'CDE05G3380' => 'cde', 'CDE06G0536' => 'cde', 'Cfa006923' => 'cfa', 'Cfa009402' => 'cfa', 'Cfa018751' => 'cfa', 'Cfa019164' => 'cfa', 'Cfa022935' => 'cfa', 'Ciclev10019081m.g' => 'ccl', 'Ciclev10025076m.g' => 'ccl', 'Ciclev10030712m.g' => 'ccl', 'Ciclev10033760m.g' => 'ccl', 'CiPaw.05G105600' => 'cil', 'CiPaw.08G136700' => 'cil', 'CiPaw.11G003900' => 'cil', 'CiPaw.11G023700' => 'cil', 'CiPaw.12G003700' => 'cil', 'ClCG06G017100' => 'cla', 'ClCG06G018110' => 'cla', 'ClCG07G008800' => 'cla', 'ClCG07G015330' => 'cla', 'COL.COLO4_13698' => 'col', 'COL.COLO4_16659' => 'col', 'COL.COLO4_21986' => 'col', 'COL.COLO4_24049' => 'col', 'COL.COLO4_29061' => 'col', 'COL.COLO4_29075' => 'col', 'COL.COLO4_30094' => 'col', 'Cpa.g.c33689' => 'cpa', 'Cpa.g.sc108.39' => 'cpa', 'Cpa.g.sc108.41' => 'cpa', 'Cpa.g.sc1163.1' => 'cpa', 'Cpa.g.sc4.155' => 'cpa', 'Cpa.g.sc6.194' => 'cpa', 'CsaV3_1G000340' => 'csa', 'CsaV3_1G001400' => 'csa', 'CsaV3_4G002220' => 'csa', 'CsaV3_4G005370' => 'csa', 'CSS0007487' => 'camsi', 'CSS0008066' => 'camsi', 'CSS0009120' => 'camsi', 'CSS0015512' => 'camsi', 'CSS0022409' => 'camsi', 'CSS0025358' => 'camsi', 'CSS0044547' => 'camsi', 'DCAR_013057' => 'dca', 'DCAR_015058' => 'dca', 'DCAR_016027' => 'dca', 'DCAR_017327' => 'dca', 'DCAR_020743' => 'dca', 'DCAR_026157' => 'dca', 'DCAR_032339' => 'dca', 'DCAR_032340' => 'dca', 'Dinv11200' => 'din', 'Dinv11201' => 'din', 'Dinv20631' => 'din', 'Dinv23182' => 'din', 'Dinv33466' => 'din', 'Dinv33583' => 'din', 'Dinv38565' => 'din', 'Duzib068G0200' => 'dzi', 'Duzib147G0132' => 'dzi', 'Duzib147G0635' => 'dzi', 'Duzib205G1670' => 'dzi', 'Duzib251G0606' => 'dzi', 'ECA232G3336' => 'eca', 'ECA232G3763' => 'eca', 'ECA232G4845' => 'eca', 'ECA234G1607' => 'eca', 'ECA246G0932' => 'eca', 'ECA247G0781' => 'eca', 'ECA247G1932' => 'eca', 'ECA247G2079' => 'eca', 'ECA247G3338' => 'eca', 'ECA247G4115' => 'eca', 'EL10Ac3g06552' => 'bvu', 'EL10Ac5g10721' => 'bvu', 'EL10Ac5g10722' => 'bvu', 'EL10Ac5g10723' => 'bvu', 'EL10Ac5g11361' => 'bvu', 'EL10Ac6g13553' => 'bvu', 'EL10As8g23872' => 'bvu', 'Eucgr.B00250' => 'egr', 'Eucgr.B00251' => 'egr', 'Eucgr.B03533' => 'egr', 'Eucgr.I02381' => 'egr', 'Eucgr.K02700' => 'egr', 'FAN02G0174' => 'fan', 'FAN02G3146' => 'fan', 'FAN04G1672' => 'fan', 'FAN04G2273' => 'fan', 'FAN05G2791' => 'fan', 'FAN05G4035' => 'fan', 'FAN07G0834' => 'fan', 'FAN08G1198' => 'fan', 'FAN09G4182' => 'fan', 'FAN12G0496' => 'fan', 'FAN13G1027' => 'fan', 'FAN13G2951' => 'fan', 'FAN14G0705' => 'fan', 'FAN14G0720' => 'fan', 'FAN17G0201' => 'fan', 'FAN17G2665' => 'fan', 'FAN18G1456' => 'fan', 'FAN18G1525' => 'fan', 'FAN18G3500' => 'fan', 'FAN28G2670' => 'fan', 'FvH4_1g12391' => 'fve', 'FvH4_4g23220' => 'fve', 'FvH4_5g08810' => 'fve', 'FvH4_5g28960' => 'fve', 'FvH4_6g42820' => 'fve', 'FvH4_6g51110' => 'fve', 'Glyma.02G051802' => 'gma', 'Glyma.04G185300' => 'gma', 'Glyma.05G202900' => 'gma', 'Glyma.08G010300' => 'gma', 'Glyma.16G131900' => 'gma', 'Glyma.17G087900' => 'gma', 'Gohir.A07G048600' => 'ghi', 'Gohir.A11G179000' => 'ghi', 'Gohir.A12G140900' => 'ghi', 'Gohir.A12G140950' => 'ghi', 'Gohir.A12G191700' => 'ghi', 'Gohir.A13G086300' => 'ghi', 'Gohir.D07G052900' => 'ghi', 'Gohir.D11G186600' => 'ghi', 'Gohir.D12G145575' => 'ghi', 'Gohir.D12G145650' => 'ghi', 'Gohir.D12G145725' => 'ghi', 'Gohir.D12G194050' => 'ghi', 'Gohir.D13G091800' => 'ghi', 'Gorai.001G055900' => 'gra', 'Gorai.007G198400' => 'gra', 'Gorai.008G157000' => 'gra', 'Gorai.008G157100' => 'gra', 'Gorai.008G208700' => 'gra', 'Gorai.010G138700' => 'gra', 'GSVIVG01000977001' => 'vvi', 'GSVIVG01007708001' => 'vvi', 'GSVIVG01008587001' => 'vvi', 'GSVIVG01018849001' => 'vvi', 'GSVIVG01032432001' => 'vvi', 'HanXRQChr02g0034131' => 'han', 'HanXRQChr02g0035981' => 'han', 'HanXRQChr02g0035991' => 'han', 'HanXRQChr05g0155611' => 'han', 'HanXRQChr05g0155621' => 'han', 'HanXRQChr08g0236501' => 'han', 'HanXRQChr09g0261321' => 'han', 'HanXRQChr09g0272081' => 'han', 'HanXRQChr10g0310741' => 'han', 'HanXRQChr11g0325591' => 'han', 'HanXRQChr12g0385691' => 'han', 'HanXRQChr13g0387801' => 'han', 'HanXRQChr15g0463011' => 'han', 'Haze_03826' => 'cav', 'Haze_03827' => 'cav', 'Haze_07183' => 'cav', 'Haze_07537' => 'cav', 'Haze_07539' => 'cav', 'Haze_12461' => 'cav', 'Haze_16115' => 'cav', 'Haze_16808' => 'cav', 'Haze_18531' => 'cav', 'Hma1.2p1_0046F.1_g026700' => 'hma', 'Hma1.2p1_0046F.1_g026710' => 'hma', 'Hma1.2p1_0168F.1_g074340' => 'hma', 'Hma1.2p1_0266F.1_g107030' => 'hma', 'Hma1.2p1_0266F.1_g107060' => 'hma', 'Hma1.2p1_0275F.1_g110510' => 'hma', 'Hma1.2p1_0592F.1_g185490' => 'hma', 'Hma1.2p1_0592F.1_g185500' => 'hma', 'Hma1.2p1_0592F.1_g185510' => 'hma', 'Hma1.2p1_0592F.1_g185520' => 'hma', 'Hma1.2p1_0592F.1_g185530' => 'hma', 'Hma1.2p1_0818F.1_g223450' => 'hma', 'HPP92_009708' => 'vpl', 'HPP92_009793' => 'vpl', 'HPP92_009796' => 'vpl', 'HPP92_009797' => 'vpl', 'HPP92_014940' => 'vpl', 'HPP92_014988' => 'vpl', 'Hund02463' => 'sun', 'Hund02760' => 'sun', 'Hund05071' => 'sun', 'Hund10108' => 'sun', 'Hund11204' => 'sun', 'Hund14016' => 'sun', 'Hund16464' => 'sun', 'Lalb_Chr09g0333391' => 'lal', 'Lalb_Chr11g0070461' => 'lal', 'Lalb_Chr12g0201671' => 'lal', 'Lalb_Chr13g0297161' => 'lal', 'Lj1g0002823' => 'lja', 'Lj3C1074T6' => 'lonja', 'Lj4A212T28' => 'lonja', 'Lj4g0005516' => 'lja', 'Lj4g0013705' => 'lja', 'Lj4g0027865' => 'lja', 'Lj5C92G16' => 'lonja', 'Lj5C92T12' => 'lonja', 'Lj7C596T3' => 'lonja', 'Lj9A446G59' => 'lonja', 'Lj9A482G21' => 'lonja', 'Lsat_1_v5_gn_1_28261' => 'lsa', 'Lsat_1_v5_gn_1_28281' => 'lsa', 'Lsat_1_v5_gn_1_32721' => 'lsa', 'Lsat_1_v5_gn_4_151760' => 'lsa', 'Lsat_1_v5_gn_4_2120' => 'lsa', 'Lsat_1_v5_gn_4_75761' => 'lsa', 'Lsat_1_v5_gn_5_10920' => 'lsa', 'Manes.02G099900' => 'mes', 'Manes.11G096200' => 'mes', 'Manes.12G007200' => 'mes', 'Manes.14G048300' => 'mes', 'Manes.17G114700' => 'mes', 'Mapoly0002s0070' => 'mpo', 'Mapoly0029s0099' => 'mpo', 'MBI07_g24742_MAGBIO' => 'mbi', 'MBI10_g27988_MAGBIO' => 'mbi', 'MBI11_g13057_MAGBIO' => 'mbi', 'MD02G1137200' => 'mdo', 'MD06G1137200' => 'mdo', 'MD07G1122300' => 'mdo', 'MD09G1078200' => 'mdo', 'MD13G1123700' => 'mdo', 'MD14G1151900' => 'mdo', 'MD17G1030900' => 'mdo', 'MD17G1068200' => 'mdo', 'MD17G1068600' => 'mdo', 'Medtr3g077540' => 'mtr', 'Medtr4g105530' => 'mtr', 'Medtr8g076580' => 'mtr', 'Medtr8g076590' => 'mtr', 'Medtr8g096410' => 'mtr', 'MELO3C016411.2' => 'cme', 'MELO3C017780.2' => 'cme', 'MELO3C022560.2' => 'cme', 'MELO3C026187.2' => 'cme', 'MELO3C026286.2' => 'cme', 'MELO3C032854.2' => 'cme', 'Migut.H02495' => 'egut', 'Migut.I00561' => 'egut', 'Migut.K01015' => 'egut', 'Migut.K01016' => 'egut', 'Migut.L00743' => 'egut', 'Migut.L00744' => 'egut', 'Migut.L00746' => 'egut', 'Migut.L00798' => 'egut', 'Migut.L00799' => 'egut', 'Migut.N02096' => 'egut', 'MSTRG.11259' => 'ama', 'MSTRG.23142' => 'ama', 'MSTRG.2499' => 'ama', 'Nitab4.5_0000003g0730' => 'nta', 'Nitab4.5_0000137g0020' => 'nta', 'Nitab4.5_0000721g0210' => 'nta', 'Nitab4.5_0000723g0050' => 'nta', 'Nitab4.5_0000913g0070' => 'nta', 'Nitab4.5_0001332g0040' => 'nta', 'Nitab4.5_0001771g0050' => 'nta', 'Nitab4.5_0001918g0050' => 'nta', 'Nitab4.5_0002686g0030' => 'nta', 'Nitab4.5_0003156g0020' => 'nta', 'Nitab4.5_0003383g0040' => 'nta', 'Nitab4.5_0003918g0010' => 'nta', 'Nitab4.5_0006760g0010' => 'nta', 'Nn1g05981' => 'nnu', 'Nn1g06288' => 'nnu', 'Nn3g16371' => 'nnu', 'Nn3g16786' => 'nnu', 'Nn4g22232' => 'nnu', 'Oeu005144.1' => 'oeu', 'Oeu005145.1' => 'oeu', 'Oeu011348.1' => 'oeu', 'Oeu016415.1' => 'oeu', 'Oeu023501.1' => 'oeu', 'Oeu044473.1' => 'oeu', 'Oeu048892.2' => 'oeu', 'Os01g0549200' => 'osa', 'Os02g0469300' => 'osa', 'Os04g0311100' => 'osa', 'Os06g0474900' => 'osa', 'Os10g0181700' => 'osa', 'Os11g0454800' => 'osa', 'Peaxi162Scf00037g00714' => 'pax', 'Peaxi162Scf00084g01217' => 'pax', 'Peaxi162Scf00257g00217' => 'pax', 'Peaxi162Scf00516g00215' => 'pax', 'Peaxi162Scf00689g00123' => 'pax', 'PGR044G2719' => 'pgr', 'PGR083G1360' => 'pgr', 'PGR102G2849' => 'pgr', 'PGR119G2534' => 'pgr', 'PGSC0003DMG400003538' => 'stu', 'PGSC0003DMG400028138' => 'stu', 'PGSC0003DMG400031732' => 'stu', 'PGSC0003DMG400038165' => 'stu', 'Phvul.002G284600' => 'pvu', 'Phvul.003G258200' => 'pvu', 'Phvul.009G176500' => 'pvu', 'Potri.003G167201' => 'ptr', 'Potri.005G118400' => 'ptr', 'Potri.012G089000' => 'ptr', 'Potri.012G102800' => 'ptr', 'Potri.015G079400' => 'ptr', 'Potri.015G100900' => 'ptr', 'Pp3c14_9810' => 'ppa', 'Pp3c15_10450' => 'ppa', 'Pp3c20_19150' => 'ppa', 'Pp3c23_12740' => 'ppa', 'Pp3c23_6310' => 'ppa', 'Pp3c24_3720' => 'ppa', 'Pp3c27_2580' => 'ppa', 'Pp3c9_8990' => 'ppa', 'PRCOL_00002854' => 'pco', 'Prupe.1G221200' => 'ppe', 'Prupe.3G289000' => 'ppe', 'Prupe.5G147000' => 'ppe', 'Prupe.6G157300' => 'ppe', 'Prupe.7G163400' => 'ppe', 'Psat0s2177g0040' => 'psa', 'Psat3g174760' => 'psa', 'Psat3g192160' => 'psa', 'Psat4g058520' => 'psa', 'Psat4g096840' => 'psa', 'Psat7g037320' => 'psa', 'PSO017G1274' => 'pso', 'PSO017G5166' => 'pso', 'PSO063G4558' => 'pso', 'PSO170G4458' => 'pso', 'PSO170G5005' => 'pso', 'PSO210G6156' => 'pso', 'PSO210G6635' => 'pso', 'PSO210G7397' => 'pso', 'PSO210G7700' => 'pso', 'PSO455G0035' => 'pso', 'PSO455G0180' => 'pso', 'PSO478G4515' => 'pso', 'PSO832G1305' => 'pso', 'PSO832G3489' => 'pso', 'QL02p075247' => 'qlo', 'QL03p051148' => 'qlo', 'QL05p010313' => 'qlo', 'QL06p034627' => 'qlo', 'QL10p001889' => 'qlo', 'QL10p010846' => 'qlo', 'RcHm_v2.0_Chr1g0350621' => 'rch', 'RcHm_v2.0_Chr1g0350641' => 'rch', 'RcHm_v2.0_Chr2g0092891' => 'rch', 'RcHm_v2.0_Chr2g0100251' => 'rch', 'RcHm_v2.0_Chr2g0158661' => 'rch', 'RcHm_v2.0_Chr2g0172741' => 'rch', 'RcHm_v2.0_Chr4g0429571' => 'rch', 'RcHm_v2.0_Chr5g0042471' => 'rch', 'RcHm_v2.0_Chr7g0189451' => 'rch', 'Rhsim08G0052000' => 'rsi', 'Rhsim08G0174400' => 'rsi', 'Rhsim08G0193200' => 'rsi', 'Rhsim10G0214800' => 'rsi', 'Rhsim10G0214900' => 'rsi', 'Rhsim10G0215000' => 'rsi', 'Rhsim12G0022900' => 'rsi', 'Rhsim12G0177500' => 'rsi', 'Rhsim12G0177700' => 'rsi', 'Sabra03G0122600' => 'sbr', 'Sabra05G0097400' => 'sbr', 'Sabra12G0064100' => 'sbr', 'Sabra15G0121300' => 'sbr', 'SalBow2G0642' => 'sbo', 'SalBow5G2667' => 'sbo', 'SalBow5G4873' => 'sbo', 'SalBow8G2395' => 'sbo', 'Sc03g0003290' => 'sci', 'Sc10g0010130' => 'sci', 'Sc22g0003650' => 'sci', 'Sed0001603' => 'sed', 'Sed0004259' => 'sed', 'Sed0006789' => 'sed', 'Sed0011838' => 'sed', 'Sed0012964' => 'sed', 'Sed0016383' => 'sed', 'Sed0019010' => 'sed', 'Sed0020188' => 'sed', 'SEGI_04702' => 'sgi', 'SEGI_17231' => 'sgi', 'SEGI_18877' => 'sgi', 'SEGI_25196' => 'sgi', 'SEGI_25515' => 'sgi', 'SEGI_28445' => 'sgi', 'SEGI_37452' => 'sgi', 'SGA_v2.0_scaffold188G40336' => 'sas', 'SGA_v2.0_scaffold228G43247' => 'sas', 'SGA_v2.0_scaffold280G46853' => 'sas', 'SGA_v2.0_scaffold34G13808' => 'sas', 'SGA_v2.0_scaffold40G15576' => 'sas', 'SGA_v2.0_scaffold611G53188' => 'sas', 'SGA_v2.0_scaffold78G25461' => 'sas', 'SGA_v2.0_scaffold90G27888' => 'sas', 'SHI08601' => 'shi', 'SHI08606' => 'shi', 'SHI17117' => 'shi', 'SHI17119' => 'shi', 'SMO118G0201' => 'smo', 'SMO169G0247' => 'smo', 'SMO176G0006' => 'smo', 'SMO176G0015' => 'smo', 'SMO202G0006' => 'smo', 'SMO240G0050' => 'smo', 'SMO286G0009' => 'smo', 'SMO338G0033' => 'smo', 'SMO356G0533' => 'smo', 'SMO364G0382' => 'smo', 'SMO367G0166' => 'smo', 'SMO367G1098' => 'smo', 'Solyc01g009920.3' => 'sly', 'Solyc01g099300.3' => 'sly', 'Solyc02g084700.3' => 'sly', 'Solyc03g097520.3' => 'sly', 'Solyc06g071580.3' => 'sly', 'Solyc10g081760.3' => 'sly', 'Sopen01g005480' => 'spe', 'Sopen01g042850' => 'spe', 'Sopen02g029370' => 'spe', 'Sopen03g028280' => 'spe', 'Sopen06g027870' => 'spe', 'Sopen10g032270' => 'spe', 'Sp5g18180' => 'spa', 'Sp6g12880' => 'spa', 'Sp6g30850' => 'spa', 'Sp7g22960' => 'spa', 'Sp7g34010' => 'spa', 'SpUn1326_0010' => 'spa', 'TAR371G0242' => 'tar', 'TAR622G0638' => 'tar', 'TAR628G1548' => 'tar', 'TAR629G1079' => 'tar', 'TAR629G3413' => 'tar', 'THA.LOC104804249' => 'tha', 'THA.LOC104808315' => 'tha', 'THA.LOC104809238' => 'tha', 'THA.LOC104825484' => 'tha', 'Thecc.01G025500' => 'tca', 'Thecc.03G015800' => 'tca', 'Thecc.03G018000' => 'tca', 'Thecc.03G134800' => 'tca', 'Thecc.04G014700' => 'tca', 'Thhalv10006991m.g' => 'esa', 'Thhalv10012707m.g' => 'esa', 'Thhalv10015739m.g' => 'esa', 'Thhalv10024553m.g' => 'esa', 'Thhalv10024673m.g' => 'esa', 'Thhalv10029187m.g' => 'esa', 'TPR.G12971' => 'tpr', 'TPR.G29396' => 'tpr', 'TPR.G33376' => 'tpr', 'TPR.G35508' => 'tpr', 'TPR.G35516' => 'tpr', 'TPR.G37317' => 'tpr', 'TPR.G37389' => 'tpr', 'TPR.G37523' => 'tpr', 'TPR.G559' => 'tpr', 'TWI14G0070' => 'twi', 'TWI14G0729' => 'twi', 'TWI18G0596' => 'twi', 'TWI39G0780' => 'twi', 'TWI39G0850' => 'twi', 'TWI73G1052' => 'twi', 'unitig_52.g17485' => 'ugi', 'unitig_61.g26355' => 'ugi', 'vmacro01040' => 'vma', 'vmacro16731' => 'vma', 'vmacro18270' => 'vma', 'vmacro19142' => 'vma', 'vmacro19407' => 'vma', 'vmacro19408' => 'vma', 'vmacro21899' => 'vma', 'vmacro21900' => 'vma', 'vmacro21901' => 'vma', 'VMungo0251G0490' => 'vmu', 'VMungo0251G1748' => 'vmu', 'VMungo1309G0421' => 'vmu', 'Zm00001eb086500' => 'zma', 'Zm00001eb150680' => 'zma', 'Zm00001eb162330' => 'zma', 'Zm00001eb203130' => 'zma', 'Zm00001eb369480' => 'zma', 'Zm00001eb382340' => 'zma', 'Zm00001eb416360' => 'zma' ), 'gf_id' => 'HOM05D000902', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000902' ), 'data_identifier' => 'HOM05D000902', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000902', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '663', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02470' => 'bna', 'A01p16260' => 'bna', 'A02p01680' => 'bna', 'A03p16600' => 'bna', 'A03p55660' => 'bna', 'A03p64160' => 'bna', 'A03p64170' => 'bna', 'A08p31900' => 'bna', 'A09p59530' => 'bna', 'A10p08230' => 'bna', 'A10p25090' => 'bna', 'Aa31LG3G7100' => 'aar', 'Aa31LG3G7110' => 'aar', 'Aa31LG6G13160' => 'aar', 'Aa31LG7G10770' => 'aar', 'Aa31LG7G3830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2723' => 'aag', 'Actinidia08045' => 'ach', 'Actinidia08888' => 'ach', 'Actinidia18333' => 'ach', 'Actinidia19334' => 'ach', 'Actinidia25552' => 'ach', 'Actinidia26089' => 'ach', 'Actinidia30615' => 'ach', 'Actinidia30616' => 'ach', 'Actinidia33083' => 'ach', 'Actinidia35762' => 'ach', 'Ah.02g110620' => 'amhyb', 'Ah.11g046390' => 'amhyb', 'AL1G31670' => 'aly', 'AL6G23730' => 'aly', 'AL7G14740' => 'aly', 'AL7G14750' => 'aly', 'AL7G14760' => 'aly', 'AL7G28220' => 'aly', 'AL8G24940' => 'aly', 'Aqoxy3G01665' => 'aox', 'Aqoxy3G02853' => 'aox', 'Aqoxy5G01513' => 'aox', 'Aqoxy5G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8SKA4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ75LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKDA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0LJZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7REX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZP4YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWX7I5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2QKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS0L9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPCD8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q161UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC7XCF' => 'arhy', 'AT1G19100' => 'ath', 'AT4G24970' => 'ath', 'AT4G36270' => 'ath', 'AT4G36280' => 'ath', 'AT4G36290' => 'ath', 'AT5G13130' => 'ath', 'AT5G50780' => 'ath', 'ATR0582G266' => 'atr', 'ATR0661G195' => 'atr', 'ATR1152G031' => 'atr', 'Atru.chr11.2382' => 'acertr', 'Atru.chr12.2337' => 'acertr', 'Atru.chr3.744' => 'acertr', 'Atru.chr6.1870' => 'acertr', 'Atru.chr9.2515' => 'acertr', 'AUR62004120' => 'cqu', 'AUR62005667' => 'cqu', 'AUR62007634' => 'cqu', 'AUR62008186' => 'cqu', 'AUR62008187' => 'cqu', 'AUR62008188' => 'cqu', 'AUR62027954' => 'cqu', 'AUR62028766' => 'cqu', 'AUR62028767' => 'cqu', 'AUR62028768' => 'cqu', 'AUR62028886' => 'cqu', 'AUR62029563' => 'cqu', 'AUR62038832' => 'cqu', 'BcaB01g04149' => 'bca', 'BcaB03g12940' => 'bca', 'BcaB03g13090' => 'bca', 'BcaB03g14466' => 'bca', 'BcaB05g24035' => 'bca', 'BcaC01g06050' => 'bca', 'BcaC04g19148' => 'bca', 'BcaC04g20761' => 'bca', 'BcaC06g32845' => 'bca', 'BcaC07g41274' => 'bca', 'BcaC09g50827' => 'bca', 'BcaNung00741' => 'bca', 'BcaNung00742' => 'bca', 'BcaNung01859' => 'bca', 'BcaNung03985' => 'bca', 'BcaNung03989' => 'bca', 'BcaNung05661' => 'bca', 'BolC1t00257H' => 'bol', 'BolC1t01956H' => 'bol', 'BolC2t06534H' => 'bol', 'BolC3t14334H' => 'bol', 'BolC5t30451H' => 'bol', 'BolC7t45880H' => 'bol', 'BolC7t46586H' => 'bol', 'BolC8t49301H' => 'bol', 'BolC8t51837H' => 'bol', 'BolC9t56822H' => 'bol', 'BolC9t59235H' => 'bol', 'BraA01t00234Z' => 'bra', 'BraA01t01563Z' => 'bra', 'BraA02t05147Z' => 'bra', 'BraA03t10947Z' => 'bra', 'BraA03t14633Z' => 'bra', 'BraA08t35112Z' => 'bra', 'BraA09t41330Z' => 'bra', 'BraA10t44570Z' => 'bra', 'C01p02670' => 'bna', 'C01p20260' => 'bna', 'C02p05890' => 'bna', 'C03p19530' => 'bna', 'C05p17470' => 'bna', 'C07p53900' => 'bna', 'C07p61630' => 'bna', 'C08p16800' => 'bna', 'C08p42810' => 'bna', 'C09p39480' => 'bna', 'C09p63980' => 'bna', 'CAN.G1001.7' => 'can', 'CAN.G1034.55' => 'can', 'CAN.G143.7' => 'can', 'CAN.G3340.1' => 'can', 'CAN.G358.19' => 'can', 'CAN.G373.2' => 'can', 'CAN.G674.16' => 'can', 'CAN.G674.17' => 'can', 'CAN.G674.18' => 'can', 'CAN.G732.2' => 'can', 'CAN.G732.3' => 'can', 'CAN.G993.39' => 'can', 'CANSAT01G2052' => 'cansat', 'CANSAT80G0070' => 'cansat', 'CANSAT80G0483' => 'cansat', 'CANSAT80G0625' => 'cansat', 'CARHR019690' => 'chi', 'CARHR080280' => 'chi', 'CARHR152750' => 'chi', 'CARHR152760' => 'chi', 'CARHR152770' => 'chi', 'CARHR200340' => 'chi', 'CARHR232370' => 'chi', 'CARHR244670' => 'chi', 'CARHR244680' => 'chi', 'CARHR257520' => 'chi', 'Carub.0001s1872' => 'cru', 'Carub.0006s1130' => 'cru', 'Carub.0007s0396' => 'cru', 'Carub.0007s0397' => 'cru', 'Carub.0007s1608' => 'cru', 'Carub.0008s1068' => 'cru', 'Carub.0008s1077' => 'cru', 'Ca_16158_v3' => 'car', 'Ca_17571_v3' => 'car', 'Ca_21936_v3' => 'car', 'Ca_22350_v3' => 'car', 'CBR_g22445' => 'cbr', 'CBR_g26290' => 'cbr', 'Cc04_g09610' => 'ccan', 'Cc04_g12280' => 'ccan', 'Cc07_g10230' => 'ccan', 'CDE02G0093' => 'cde', 'CDE02G0701' => 'cde', 'CDE04G1050' => 'cde', 'CDE05G1833' => 'cde', 'CDE05G3058' => 'cde', 'CDE05G3380' => 'cde', 'CDE06G0536' => 'cde', 'Cfa006923' => 'cfa', 'Cfa009402' => 'cfa', 'Cfa018751' => 'cfa', 'Cfa019164' => 'cfa', 'Cfa022935' => 'cfa', 'Ciclev10019081m.g' => 'ccl', 'Ciclev10025076m.g' => 'ccl', 'Ciclev10030712m.g' => 'ccl', 'Ciclev10033760m.g' => 'ccl', 'CiPaw.05G105600' => 'cil', 'CiPaw.08G136700' => 'cil', 'CiPaw.11G003900' => 'cil', 'CiPaw.11G023700' => 'cil', 'CiPaw.12G003700' => 'cil', 'ClCG06G017100' => 'cla', 'ClCG06G018110' => 'cla', 'ClCG07G008800' => 'cla', 'ClCG07G015330' => 'cla', 'COL.COLO4_13698' => 'col', 'COL.COLO4_16659' => 'col', 'COL.COLO4_21986' => 'col', 'COL.COLO4_24049' => 'col', 'COL.COLO4_29061' => 'col', 'COL.COLO4_29075' => 'col', 'COL.COLO4_30094' => 'col', 'Cpa.g.c33689' => 'cpa', 'Cpa.g.sc108.39' => 'cpa', 'Cpa.g.sc108.41' => 'cpa', 'Cpa.g.sc1163.1' => 'cpa', 'Cpa.g.sc4.155' => 'cpa', 'Cpa.g.sc6.194' => 'cpa', 'CsaV3_1G000340' => 'csa', 'CsaV3_1G001400' => 'csa', 'CsaV3_4G002220' => 'csa', 'CsaV3_4G005370' => 'csa', 'CSS0007487' => 'camsi', 'CSS0008066' => 'camsi', 'CSS0009120' => 'camsi', 'CSS0015512' => 'camsi', 'CSS0022409' => 'camsi', 'CSS0025358' => 'camsi', 'CSS0044547' => 'camsi', 'DCAR_013057' => 'dca', 'DCAR_015058' => 'dca', 'DCAR_016027' => 'dca', 'DCAR_017327' => 'dca', 'DCAR_020743' => 'dca', 'DCAR_026157' => 'dca', 'DCAR_032339' => 'dca', 'DCAR_032340' => 'dca', 'Dinv11200' => 'din', 'Dinv11201' => 'din', 'Dinv20631' => 'din', 'Dinv23182' => 'din', 'Dinv33466' => 'din', 'Dinv33583' => 'din', 'Dinv38565' => 'din', 'Duzib068G0200' => 'dzi', 'Duzib147G0132' => 'dzi', 'Duzib147G0635' => 'dzi', 'Duzib205G1670' => 'dzi', 'Duzib251G0606' => 'dzi', 'ECA232G3336' => 'eca', 'ECA232G3763' => 'eca', 'ECA232G4845' => 'eca', 'ECA234G1607' => 'eca', 'ECA246G0932' => 'eca', 'ECA247G0781' => 'eca', 'ECA247G1932' => 'eca', 'ECA247G2079' => 'eca', 'ECA247G3338' => 'eca', 'ECA247G4115' => 'eca', 'EL10Ac3g06552' => 'bvu', 'EL10Ac5g10721' => 'bvu', 'EL10Ac5g10722' => 'bvu', 'EL10Ac5g10723' => 'bvu', 'EL10Ac5g11361' => 'bvu', 'EL10Ac6g13553' => 'bvu', 'EL10As8g23872' => 'bvu', 'Eucgr.B00250' => 'egr', 'Eucgr.B00251' => 'egr', 'Eucgr.B03533' => 'egr', 'Eucgr.I02381' => 'egr', 'Eucgr.K02700' => 'egr', 'FAN02G0174' => 'fan', 'FAN02G3146' => 'fan', 'FAN04G1672' => 'fan', 'FAN04G2273' => 'fan', 'FAN05G2791' => 'fan', 'FAN05G4035' => 'fan', 'FAN07G0834' => 'fan', 'FAN08G1198' => 'fan', 'FAN09G4182' => 'fan', 'FAN12G0496' => 'fan', 'FAN13G1027' => 'fan', 'FAN13G2951' => 'fan', 'FAN14G0705' => 'fan', 'FAN14G0720' => 'fan', 'FAN17G0201' => 'fan', 'FAN17G2665' => 'fan', 'FAN18G1456' => 'fan', 'FAN18G1525' => 'fan', 'FAN18G3500' => 'fan', 'FAN28G2670' => 'fan', 'FvH4_1g12391' => 'fve', 'FvH4_4g23220' => 'fve', 'FvH4_5g08810' => 'fve', 'FvH4_5g28960' => 'fve', 'FvH4_6g42820' => 'fve', 'FvH4_6g51110' => 'fve', 'Glyma.02G051802' => 'gma', 'Glyma.04G185300' => 'gma', 'Glyma.05G202900' => 'gma', 'Glyma.08G010300' => 'gma', 'Glyma.16G131900' => 'gma', 'Glyma.17G087900' => 'gma', 'Gohir.A07G048600' => 'ghi', 'Gohir.A11G179000' => 'ghi', 'Gohir.A12G140900' => 'ghi', 'Gohir.A12G140950' => 'ghi', 'Gohir.A12G191700' => 'ghi', 'Gohir.A13G086300' => 'ghi', 'Gohir.D07G052900' => 'ghi', 'Gohir.D11G186600' => 'ghi', 'Gohir.D12G145575' => 'ghi', 'Gohir.D12G145650' => 'ghi', 'Gohir.D12G145725' => 'ghi', 'Gohir.D12G194050' => 'ghi', 'Gohir.D13G091800' => 'ghi', 'Gorai.001G055900' => 'gra', 'Gorai.007G198400' => 'gra', 'Gorai.008G157000' => 'gra', 'Gorai.008G157100' => 'gra', 'Gorai.008G208700' => 'gra', 'Gorai.010G138700' => 'gra', 'GSVIVG01000977001' => 'vvi', 'GSVIVG01007708001' => 'vvi', 'GSVIVG01008587001' => 'vvi', 'GSVIVG01018849001' => 'vvi', 'GSVIVG01032432001' => 'vvi', 'HanXRQChr02g0034131' => 'han', 'HanXRQChr02g0035981' => 'han', 'HanXRQChr02g0035991' => 'han', 'HanXRQChr05g0155611' => 'han', 'HanXRQChr05g0155621' => 'han', 'HanXRQChr08g0236501' => 'han', 'HanXRQChr09g0261321' => 'han', 'HanXRQChr09g0272081' => 'han', 'HanXRQChr10g0310741' => 'han', 'HanXRQChr11g0325591' => 'han', 'HanXRQChr12g0385691' => 'han', 'HanXRQChr13g0387801' => 'han', 'HanXRQChr15g0463011' => 'han', 'Haze_03826' => 'cav', 'Haze_03827' => 'cav', 'Haze_07183' => 'cav', 'Haze_07537' => 'cav', 'Haze_07539' => 'cav', 'Haze_12461' => 'cav', 'Haze_16115' => 'cav', 'Haze_16808' => 'cav', 'Haze_18531' => 'cav', 'Hma1.2p1_0046F.1_g026700' => 'hma', 'Hma1.2p1_0046F.1_g026710' => 'hma', 'Hma1.2p1_0168F.1_g074340' => 'hma', 'Hma1.2p1_0266F.1_g107030' => 'hma', 'Hma1.2p1_0266F.1_g107060' => 'hma', 'Hma1.2p1_0275F.1_g110510' => 'hma', 'Hma1.2p1_0592F.1_g185490' => 'hma', 'Hma1.2p1_0592F.1_g185500' => 'hma', 'Hma1.2p1_0592F.1_g185510' => 'hma', 'Hma1.2p1_0592F.1_g185520' => 'hma', 'Hma1.2p1_0592F.1_g185530' => 'hma', 'Hma1.2p1_0818F.1_g223450' => 'hma', 'HPP92_009708' => 'vpl', 'HPP92_009793' => 'vpl', 'HPP92_009796' => 'vpl', 'HPP92_009797' => 'vpl', 'HPP92_014940' => 'vpl', 'HPP92_014988' => 'vpl', 'Hund02463' => 'sun', 'Hund02760' => 'sun', 'Hund05071' => 'sun', 'Hund10108' => 'sun', 'Hund11204' => 'sun', 'Hund14016' => 'sun', 'Hund16464' => 'sun', 'Lalb_Chr09g0333391' => 'lal', 'Lalb_Chr11g0070461' => 'lal', 'Lalb_Chr12g0201671' => 'lal', 'Lalb_Chr13g0297161' => 'lal', 'Lj1g0002823' => 'lja', 'Lj3C1074T6' => 'lonja', 'Lj4A212T28' => 'lonja', 'Lj4g0005516' => 'lja', 'Lj4g0013705' => 'lja', 'Lj4g0027865' => 'lja', 'Lj5C92G16' => 'lonja', 'Lj5C92T12' => 'lonja', 'Lj7C596T3' => 'lonja', 'Lj9A446G59' => 'lonja', 'Lj9A482G21' => 'lonja', 'Lsat_1_v5_gn_1_28261' => 'lsa', 'Lsat_1_v5_gn_1_28281' => 'lsa', 'Lsat_1_v5_gn_1_32721' => 'lsa', 'Lsat_1_v5_gn_4_151760' => 'lsa', 'Lsat_1_v5_gn_4_2120' => 'lsa', 'Lsat_1_v5_gn_4_75761' => 'lsa', 'Lsat_1_v5_gn_5_10920' => 'lsa', 'Manes.02G099900' => 'mes', 'Manes.11G096200' => 'mes', 'Manes.12G007200' => 'mes', 'Manes.14G048300' => 'mes', 'Manes.17G114700' => 'mes', 'Mapoly0002s0070' => 'mpo', 'Mapoly0029s0099' => 'mpo', 'MBI07_g24742_MAGBIO' => 'mbi', 'MBI10_g27988_MAGBIO' => 'mbi', 'MBI11_g13057_MAGBIO' => 'mbi', 'MD02G1137200' => 'mdo', 'MD06G1137200' => 'mdo', 'MD07G1122300' => 'mdo', 'MD09G1078200' => 'mdo', 'MD13G1123700' => 'mdo', 'MD14G1151900' => 'mdo', 'MD17G1030900' => 'mdo', 'MD17G1068200' => 'mdo', 'MD17G1068600' => 'mdo', 'Medtr3g077540' => 'mtr', 'Medtr4g105530' => 'mtr', 'Medtr8g076580' => 'mtr', 'Medtr8g076590' => 'mtr', 'Medtr8g096410' => 'mtr', 'MELO3C016411.2' => 'cme', 'MELO3C017780.2' => 'cme', 'MELO3C022560.2' => 'cme', 'MELO3C026187.2' => 'cme', 'MELO3C026286.2' => 'cme', 'MELO3C032854.2' => 'cme', 'Migut.H02495' => 'egut', 'Migut.I00561' => 'egut', 'Migut.K01015' => 'egut', 'Migut.K01016' => 'egut', 'Migut.L00743' => 'egut', 'Migut.L00744' => 'egut', 'Migut.L00746' => 'egut', 'Migut.L00798' => 'egut', 'Migut.L00799' => 'egut', 'Migut.N02096' => 'egut', 'MSTRG.11259' => 'ama', 'MSTRG.23142' => 'ama', 'MSTRG.2499' => 'ama', 'Nitab4.5_0000003g0730' => 'nta', 'Nitab4.5_0000137g0020' => 'nta', 'Nitab4.5_0000721g0210' => 'nta', 'Nitab4.5_0000723g0050' => 'nta', 'Nitab4.5_0000913g0070' => 'nta', 'Nitab4.5_0001332g0040' => 'nta', 'Nitab4.5_0001771g0050' => 'nta', 'Nitab4.5_0001918g0050' => 'nta', 'Nitab4.5_0002686g0030' => 'nta', 'Nitab4.5_0003156g0020' => 'nta', 'Nitab4.5_0003383g0040' => 'nta', 'Nitab4.5_0003918g0010' => 'nta', 'Nitab4.5_0006760g0010' => 'nta', 'Nn1g05981' => 'nnu', 'Nn1g06288' => 'nnu', 'Nn3g16371' => 'nnu', 'Nn3g16786' => 'nnu', 'Nn4g22232' => 'nnu', 'Oeu005144.1' => 'oeu', 'Oeu005145.1' => 'oeu', 'Oeu011348.1' => 'oeu', 'Oeu016415.1' => 'oeu', 'Oeu023501.1' => 'oeu', 'Oeu044473.1' => 'oeu', 'Oeu048892.2' => 'oeu', 'Os01g0549200' => 'osa', 'Os02g0469300' => 'osa', 'Os04g0311100' => 'osa', 'Os06g0474900' => 'osa', 'Os10g0181700' => 'osa', 'Os11g0454800' => 'osa', 'Peaxi162Scf00037g00714' => 'pax', 'Peaxi162Scf00084g01217' => 'pax', 'Peaxi162Scf00257g00217' => 'pax', 'Peaxi162Scf00516g00215' => 'pax', 'Peaxi162Scf00689g00123' => 'pax', 'PGR044G2719' => 'pgr', 'PGR083G1360' => 'pgr', 'PGR102G2849' => 'pgr', 'PGR119G2534' => 'pgr', 'PGSC0003DMG400003538' => 'stu', 'PGSC0003DMG400028138' => 'stu', 'PGSC0003DMG400031732' => 'stu', 'PGSC0003DMG400038165' => 'stu', 'Phvul.002G284600' => 'pvu', 'Phvul.003G258200' => 'pvu', 'Phvul.009G176500' => 'pvu', 'Potri.003G167201' => 'ptr', 'Potri.005G118400' => 'ptr', 'Potri.012G089000' => 'ptr', 'Potri.012G102800' => 'ptr', 'Potri.015G079400' => 'ptr', 'Potri.015G100900' => 'ptr', 'Pp3c14_9810' => 'ppa', 'Pp3c15_10450' => 'ppa', 'Pp3c20_19150' => 'ppa', 'Pp3c23_12740' => 'ppa', 'Pp3c23_6310' => 'ppa', 'Pp3c24_3720' => 'ppa', 'Pp3c27_2580' => 'ppa', 'Pp3c9_8990' => 'ppa', 'PRCOL_00002854' => 'pco', 'Prupe.1G221200' => 'ppe', 'Prupe.3G289000' => 'ppe', 'Prupe.5G147000' => 'ppe', 'Prupe.6G157300' => 'ppe', 'Prupe.7G163400' => 'ppe', 'Psat0s2177g0040' => 'psa', 'Psat3g174760' => 'psa', 'Psat3g192160' => 'psa', 'Psat4g058520' => 'psa', 'Psat4g096840' => 'psa', 'Psat7g037320' => 'psa', 'PSO017G1274' => 'pso', 'PSO017G5166' => 'pso', 'PSO063G4558' => 'pso', 'PSO170G4458' => 'pso', 'PSO170G5005' => 'pso', 'PSO210G6156' => 'pso', 'PSO210G6635' => 'pso', 'PSO210G7397' => 'pso', 'PSO210G7700' => 'pso', 'PSO455G0035' => 'pso', 'PSO455G0180' => 'pso', 'PSO478G4515' => 'pso', 'PSO832G1305' => 'pso', 'PSO832G3489' => 'pso', 'QL02p075247' => 'qlo', 'QL03p051148' => 'qlo', 'QL05p010313' => 'qlo', 'QL06p034627' => 'qlo', 'QL10p001889' => 'qlo', 'QL10p010846' => 'qlo', 'RcHm_v2.0_Chr1g0350621' => 'rch', 'RcHm_v2.0_Chr1g0350641' => 'rch', 'RcHm_v2.0_Chr2g0092891' => 'rch', 'RcHm_v2.0_Chr2g0100251' => 'rch', 'RcHm_v2.0_Chr2g0158661' => 'rch', 'RcHm_v2.0_Chr2g0172741' => 'rch', 'RcHm_v2.0_Chr4g0429571' => 'rch', 'RcHm_v2.0_Chr5g0042471' => 'rch', 'RcHm_v2.0_Chr7g0189451' => 'rch', 'Rhsim08G0052000' => 'rsi', 'Rhsim08G0174400' => 'rsi', 'Rhsim08G0193200' => 'rsi', 'Rhsim10G0214800' => 'rsi', 'Rhsim10G0214900' => 'rsi', 'Rhsim10G0215000' => 'rsi', 'Rhsim12G0022900' => 'rsi', 'Rhsim12G0177500' => 'rsi', 'Rhsim12G0177700' => 'rsi', 'Sabra03G0122600' => 'sbr', 'Sabra05G0097400' => 'sbr', 'Sabra12G0064100' => 'sbr', 'Sabra15G0121300' => 'sbr', 'SalBow2G0642' => 'sbo', 'SalBow5G2667' => 'sbo', 'SalBow5G4873' => 'sbo', 'SalBow8G2395' => 'sbo', 'Sc03g0003290' => 'sci', 'Sc10g0010130' => 'sci', 'Sc22g0003650' => 'sci', 'Sed0001603' => 'sed', 'Sed0004259' => 'sed', 'Sed0006789' => 'sed', 'Sed0011838' => 'sed', 'Sed0012964' => 'sed', 'Sed0016383' => 'sed', 'Sed0019010' => 'sed', 'Sed0020188' => 'sed', 'SEGI_04702' => 'sgi', 'SEGI_17231' => 'sgi', 'SEGI_18877' => 'sgi', 'SEGI_25196' => 'sgi', 'SEGI_25515' => 'sgi', 'SEGI_28445' => 'sgi', 'SEGI_37452' => 'sgi', 'SGA_v2.0_scaffold188G40336' => 'sas', 'SGA_v2.0_scaffold228G43247' => 'sas', 'SGA_v2.0_scaffold280G46853' => 'sas', 'SGA_v2.0_scaffold34G13808' => 'sas', 'SGA_v2.0_scaffold40G15576' => 'sas', 'SGA_v2.0_scaffold611G53188' => 'sas', 'SGA_v2.0_scaffold78G25461' => 'sas', 'SGA_v2.0_scaffold90G27888' => 'sas', 'SHI08601' => 'shi', 'SHI08606' => 'shi', 'SHI17117' => 'shi', 'SHI17119' => 'shi', 'SMO118G0201' => 'smo', 'SMO169G0247' => 'smo', 'SMO176G0006' => 'smo', 'SMO176G0015' => 'smo', 'SMO202G0006' => 'smo', 'SMO240G0050' => 'smo', 'SMO286G0009' => 'smo', 'SMO338G0033' => 'smo', 'SMO356G0533' => 'smo', 'SMO364G0382' => 'smo', 'SMO367G0166' => 'smo', 'SMO367G1098' => 'smo', 'Solyc01g009920.3' => 'sly', 'Solyc01g099300.3' => 'sly', 'Solyc02g084700.3' => 'sly', 'Solyc03g097520.3' => 'sly', 'Solyc06g071580.3' => 'sly', 'Solyc10g081760.3' => 'sly', 'Sopen01g005480' => 'spe', 'Sopen01g042850' => 'spe', 'Sopen02g029370' => 'spe', 'Sopen03g028280' => 'spe', 'Sopen06g027870' => 'spe', 'Sopen10g032270' => 'spe', 'Sp5g18180' => 'spa', 'Sp6g12880' => 'spa', 'Sp6g30850' => 'spa', 'Sp7g22960' => 'spa', 'Sp7g34010' => 'spa', 'SpUn1326_0010' => 'spa', 'TAR371G0242' => 'tar', 'TAR622G0638' => 'tar', 'TAR628G1548' => 'tar', 'TAR629G1079' => 'tar', 'TAR629G3413' => 'tar', 'THA.LOC104804249' => 'tha', 'THA.LOC104808315' => 'tha', 'THA.LOC104809238' => 'tha', 'THA.LOC104825484' => 'tha', 'Thecc.01G025500' => 'tca', 'Thecc.03G015800' => 'tca', 'Thecc.03G018000' => 'tca', 'Thecc.03G134800' => 'tca', 'Thecc.04G014700' => 'tca', 'Thhalv10006991m.g' => 'esa', 'Thhalv10012707m.g' => 'esa', 'Thhalv10015739m.g' => 'esa', 'Thhalv10024553m.g' => 'esa', 'Thhalv10024673m.g' => 'esa', 'Thhalv10029187m.g' => 'esa', 'TPR.G12971' => 'tpr', 'TPR.G29396' => 'tpr', 'TPR.G33376' => 'tpr', 'TPR.G35508' => 'tpr', 'TPR.G35516' => 'tpr', 'TPR.G37317' => 'tpr', 'TPR.G37389' => 'tpr', 'TPR.G37523' => 'tpr', 'TPR.G559' => 'tpr', 'TWI14G0070' => 'twi', 'TWI14G0729' => 'twi', 'TWI18G0596' => 'twi', 'TWI39G0780' => 'twi', 'TWI39G0850' => 'twi', 'TWI73G1052' => 'twi', 'unitig_52.g17485' => 'ugi', 'unitig_61.g26355' => 'ugi', 'vmacro01040' => 'vma', 'vmacro16731' => 'vma', 'vmacro18270' => 'vma', 'vmacro19142' => 'vma', 'vmacro19407' => 'vma', 'vmacro19408' => 'vma', 'vmacro21899' => 'vma', 'vmacro21900' => 'vma', 'vmacro21901' => 'vma', 'VMungo0251G0490' => 'vmu', 'VMungo0251G1748' => 'vmu', 'VMungo1309G0421' => 'vmu', 'Zm00001eb086500' => 'zma', 'Zm00001eb150680' => 'zma', 'Zm00001eb162330' => 'zma', 'Zm00001eb203130' => 'zma', 'Zm00001eb369480' => 'zma', 'Zm00001eb382340' => 'zma', 'Zm00001eb416360' => 'zma' ) $gf_id = 'HOM05D000902' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000902' ) $data_identifier = 'HOM05D000902' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 13, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 10, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 6, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 9, 'hma' => (int) 12, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 4, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 6, 'ppa' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 6, 'rch' => (int) 9, 'rsi' => (int) 9, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 12, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 3, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416360' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000902', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '663', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02470' => 'bna', 'A01p16260' => 'bna', 'A02p01680' => 'bna', 'A03p16600' => 'bna', 'A03p55660' => 'bna', 'A03p64160' => 'bna', 'A03p64170' => 'bna', 'A08p31900' => 'bna', 'A09p59530' => 'bna', 'A10p08230' => 'bna', 'A10p25090' => 'bna', 'Aa31LG3G7100' => 'aar', 'Aa31LG3G7110' => 'aar', 'Aa31LG6G13160' => 'aar', 'Aa31LG7G10770' => 'aar', 'Aa31LG7G3830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2723' => 'aag', 'Actinidia08045' => 'ach', 'Actinidia08888' => 'ach', 'Actinidia18333' => 'ach', 'Actinidia19334' => 'ach', 'Actinidia25552' => 'ach', 'Actinidia26089' => 'ach', 'Actinidia30615' => 'ach', 'Actinidia30616' => 'ach', 'Actinidia33083' => 'ach', 'Actinidia35762' => 'ach', 'Ah.02g110620' => 'amhyb', 'Ah.11g046390' => 'amhyb', 'AL1G31670' => 'aly', 'AL6G23730' => 'aly', 'AL7G14740' => 'aly', 'AL7G14750' => 'aly', 'AL7G14760' => 'aly', 'AL7G28220' => 'aly', 'AL8G24940' => 'aly', 'Aqoxy3G01665' => 'aox', 'Aqoxy3G02853' => 'aox', 'Aqoxy5G01513' => 'aox', 'Aqoxy5G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8SKA4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ75LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKDA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0LJZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7REX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZP4YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWX7I5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2QKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS0L9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPCD8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q161UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC7XCF' => 'arhy', 'AT1G19100' => 'ath', 'AT4G24970' => 'ath', 'AT4G36270' => 'ath', 'AT4G36280' => 'ath', 'AT4G36290' => 'ath', 'AT5G13130' => 'ath', 'AT5G50780' => 'ath', 'ATR0582G266' => 'atr', 'ATR0661G195' => 'atr', 'ATR1152G031' => 'atr', 'Atru.chr11.2382' => 'acertr', 'Atru.chr12.2337' => 'acertr', 'Atru.chr3.744' => 'acertr', 'Atru.chr6.1870' => 'acertr', 'Atru.chr9.2515' => 'acertr', 'AUR62004120' => 'cqu', 'AUR62005667' => 'cqu', 'AUR62007634' => 'cqu', 'AUR62008186' => 'cqu', 'AUR62008187' => 'cqu', 'AUR62008188' => 'cqu', 'AUR62027954' => 'cqu', 'AUR62028766' => 'cqu', 'AUR62028767' => 'cqu', 'AUR62028768' => 'cqu', 'AUR62028886' => 'cqu', 'AUR62029563' => 'cqu', 'AUR62038832' => 'cqu', 'BcaB01g04149' => 'bca', 'BcaB03g12940' => 'bca', 'BcaB03g13090' => 'bca', 'BcaB03g14466' => 'bca', 'BcaB05g24035' => 'bca', 'BcaC01g06050' => 'bca', 'BcaC04g19148' => 'bca', 'BcaC04g20761' => 'bca', 'BcaC06g32845' => 'bca', 'BcaC07g41274' => 'bca', 'BcaC09g50827' => 'bca', 'BcaNung00741' => 'bca', 'BcaNung00742' => 'bca', 'BcaNung01859' => 'bca', 'BcaNung03985' => 'bca', 'BcaNung03989' => 'bca', 'BcaNung05661' => 'bca', 'BolC1t00257H' => 'bol', 'BolC1t01956H' => 'bol', 'BolC2t06534H' => 'bol', 'BolC3t14334H' => 'bol', 'BolC5t30451H' => 'bol', 'BolC7t45880H' => 'bol', 'BolC7t46586H' => 'bol', 'BolC8t49301H' => 'bol', 'BolC8t51837H' => 'bol', 'BolC9t56822H' => 'bol', 'BolC9t59235H' => 'bol', 'BraA01t00234Z' => 'bra', 'BraA01t01563Z' => 'bra', 'BraA02t05147Z' => 'bra', 'BraA03t10947Z' => 'bra', 'BraA03t14633Z' => 'bra', 'BraA08t35112Z' => 'bra', 'BraA09t41330Z' => 'bra', 'BraA10t44570Z' => 'bra', 'C01p02670' => 'bna', 'C01p20260' => 'bna', 'C02p05890' => 'bna', 'C03p19530' => 'bna', 'C05p17470' => 'bna', 'C07p53900' => 'bna', 'C07p61630' => 'bna', 'C08p16800' => 'bna', 'C08p42810' => 'bna', 'C09p39480' => 'bna', 'C09p63980' => 'bna', 'CAN.G1001.7' => 'can', 'CAN.G1034.55' => 'can', 'CAN.G143.7' => 'can', 'CAN.G3340.1' => 'can', 'CAN.G358.19' => 'can', 'CAN.G373.2' => 'can', 'CAN.G674.16' => 'can', 'CAN.G674.17' => 'can', 'CAN.G674.18' => 'can', 'CAN.G732.2' => 'can', 'CAN.G732.3' => 'can', 'CAN.G993.39' => 'can', 'CANSAT01G2052' => 'cansat', 'CANSAT80G0070' => 'cansat', 'CANSAT80G0483' => 'cansat', 'CANSAT80G0625' => 'cansat', 'CARHR019690' => 'chi', 'CARHR080280' => 'chi', 'CARHR152750' => 'chi', 'CARHR152760' => 'chi', 'CARHR152770' => 'chi', 'CARHR200340' => 'chi', 'CARHR232370' => 'chi', 'CARHR244670' => 'chi', 'CARHR244680' => 'chi', 'CARHR257520' => 'chi', 'Carub.0001s1872' => 'cru', 'Carub.0006s1130' => 'cru', 'Carub.0007s0396' => 'cru', 'Carub.0007s0397' => 'cru', 'Carub.0007s1608' => 'cru', 'Carub.0008s1068' => 'cru', 'Carub.0008s1077' => 'cru', 'Ca_16158_v3' => 'car', 'Ca_17571_v3' => 'car', 'Ca_21936_v3' => 'car', 'Ca_22350_v3' => 'car', 'CBR_g22445' => 'cbr', 'CBR_g26290' => 'cbr', 'Cc04_g09610' => 'ccan', 'Cc04_g12280' => 'ccan', 'Cc07_g10230' => 'ccan', 'CDE02G0093' => 'cde', 'CDE02G0701' => 'cde', 'CDE04G1050' => 'cde', 'CDE05G1833' => 'cde', 'CDE05G3058' => 'cde', 'CDE05G3380' => 'cde', 'CDE06G0536' => 'cde', 'Cfa006923' => 'cfa', 'Cfa009402' => 'cfa', 'Cfa018751' => 'cfa', 'Cfa019164' => 'cfa', 'Cfa022935' => 'cfa', 'Ciclev10019081m.g' => 'ccl', 'Ciclev10025076m.g' => 'ccl', 'Ciclev10030712m.g' => 'ccl', 'Ciclev10033760m.g' => 'ccl', 'CiPaw.05G105600' => 'cil', 'CiPaw.08G136700' => 'cil', 'CiPaw.11G003900' => 'cil', 'CiPaw.11G023700' => 'cil', 'CiPaw.12G003700' => 'cil', 'ClCG06G017100' => 'cla', 'ClCG06G018110' => 'cla', 'ClCG07G008800' => 'cla', 'ClCG07G015330' => 'cla', 'COL.COLO4_13698' => 'col', 'COL.COLO4_16659' => 'col', 'COL.COLO4_21986' => 'col', 'COL.COLO4_24049' => 'col', 'COL.COLO4_29061' => 'col', 'COL.COLO4_29075' => 'col', 'COL.COLO4_30094' => 'col', 'Cpa.g.c33689' => 'cpa', 'Cpa.g.sc108.39' => 'cpa', 'Cpa.g.sc108.41' => 'cpa', 'Cpa.g.sc1163.1' => 'cpa', 'Cpa.g.sc4.155' => 'cpa', 'Cpa.g.sc6.194' => 'cpa', 'CsaV3_1G000340' => 'csa', 'CsaV3_1G001400' => 'csa', 'CsaV3_4G002220' => 'csa', 'CsaV3_4G005370' => 'csa', 'CSS0007487' => 'camsi', 'CSS0008066' => 'camsi', 'CSS0009120' => 'camsi', 'CSS0015512' => 'camsi', 'CSS0022409' => 'camsi', 'CSS0025358' => 'camsi', 'CSS0044547' => 'camsi', 'DCAR_013057' => 'dca', 'DCAR_015058' => 'dca', 'DCAR_016027' => 'dca', 'DCAR_017327' => 'dca', 'DCAR_020743' => 'dca', 'DCAR_026157' => 'dca', 'DCAR_032339' => 'dca', 'DCAR_032340' => 'dca', 'Dinv11200' => 'din', 'Dinv11201' => 'din', 'Dinv20631' => 'din', 'Dinv23182' => 'din', 'Dinv33466' => 'din', 'Dinv33583' => 'din', 'Dinv38565' => 'din', 'Duzib068G0200' => 'dzi', 'Duzib147G0132' => 'dzi', 'Duzib147G0635' => 'dzi', 'Duzib205G1670' => 'dzi', 'Duzib251G0606' => 'dzi', 'ECA232G3336' => 'eca', 'ECA232G3763' => 'eca', 'ECA232G4845' => 'eca', 'ECA234G1607' => 'eca', 'ECA246G0932' => 'eca', 'ECA247G0781' => 'eca', 'ECA247G1932' => 'eca', 'ECA247G2079' => 'eca', 'ECA247G3338' => 'eca', 'ECA247G4115' => 'eca', 'EL10Ac3g06552' => 'bvu', 'EL10Ac5g10721' => 'bvu', 'EL10Ac5g10722' => 'bvu', 'EL10Ac5g10723' => 'bvu', 'EL10Ac5g11361' => 'bvu', 'EL10Ac6g13553' => 'bvu', 'EL10As8g23872' => 'bvu', 'Eucgr.B00250' => 'egr', 'Eucgr.B00251' => 'egr', 'Eucgr.B03533' => 'egr', 'Eucgr.I02381' => 'egr', 'Eucgr.K02700' => 'egr', 'FAN02G0174' => 'fan', 'FAN02G3146' => 'fan', 'FAN04G1672' => 'fan', 'FAN04G2273' => 'fan', 'FAN05G2791' => 'fan', 'FAN05G4035' => 'fan', 'FAN07G0834' => 'fan', 'FAN08G1198' => 'fan', 'FAN09G4182' => 'fan', 'FAN12G0496' => 'fan', 'FAN13G1027' => 'fan', 'FAN13G2951' => 'fan', 'FAN14G0705' => 'fan', 'FAN14G0720' => 'fan', 'FAN17G0201' => 'fan', 'FAN17G2665' => 'fan', 'FAN18G1456' => 'fan', 'FAN18G1525' => 'fan', 'FAN18G3500' => 'fan', 'FAN28G2670' => 'fan', 'FvH4_1g12391' => 'fve', 'FvH4_4g23220' => 'fve', 'FvH4_5g08810' => 'fve', 'FvH4_5g28960' => 'fve', 'FvH4_6g42820' => 'fve', 'FvH4_6g51110' => 'fve', 'Glyma.02G051802' => 'gma', 'Glyma.04G185300' => 'gma', 'Glyma.05G202900' => 'gma', 'Glyma.08G010300' => 'gma', 'Glyma.16G131900' => 'gma', 'Glyma.17G087900' => 'gma', 'Gohir.A07G048600' => 'ghi', 'Gohir.A11G179000' => 'ghi', 'Gohir.A12G140900' => 'ghi', 'Gohir.A12G140950' => 'ghi', 'Gohir.A12G191700' => 'ghi', 'Gohir.A13G086300' => 'ghi', 'Gohir.D07G052900' => 'ghi', 'Gohir.D11G186600' => 'ghi', 'Gohir.D12G145575' => 'ghi', 'Gohir.D12G145650' => 'ghi', 'Gohir.D12G145725' => 'ghi', 'Gohir.D12G194050' => 'ghi', 'Gohir.D13G091800' => 'ghi', 'Gorai.001G055900' => 'gra', 'Gorai.007G198400' => 'gra', 'Gorai.008G157000' => 'gra', 'Gorai.008G157100' => 'gra', 'Gorai.008G208700' => 'gra', 'Gorai.010G138700' => 'gra', 'GSVIVG01000977001' => 'vvi', 'GSVIVG01007708001' => 'vvi', 'GSVIVG01008587001' => 'vvi', 'GSVIVG01018849001' => 'vvi', 'GSVIVG01032432001' => 'vvi', 'HanXRQChr02g0034131' => 'han', 'HanXRQChr02g0035981' => 'han', 'HanXRQChr02g0035991' => 'han', 'HanXRQChr05g0155611' => 'han', 'HanXRQChr05g0155621' => 'han', 'HanXRQChr08g0236501' => 'han', 'HanXRQChr09g0261321' => 'han', 'HanXRQChr09g0272081' => 'han', 'HanXRQChr10g0310741' => 'han', 'HanXRQChr11g0325591' => 'han', 'HanXRQChr12g0385691' => 'han', 'HanXRQChr13g0387801' => 'han', 'HanXRQChr15g0463011' => 'han', 'Haze_03826' => 'cav', 'Haze_03827' => 'cav', 'Haze_07183' => 'cav', 'Haze_07537' => 'cav', 'Haze_07539' => 'cav', 'Haze_12461' => 'cav', 'Haze_16115' => 'cav', 'Haze_16808' => 'cav', 'Haze_18531' => 'cav', 'Hma1.2p1_0046F.1_g026700' => 'hma', 'Hma1.2p1_0046F.1_g026710' => 'hma', 'Hma1.2p1_0168F.1_g074340' => 'hma', 'Hma1.2p1_0266F.1_g107030' => 'hma', 'Hma1.2p1_0266F.1_g107060' => 'hma', 'Hma1.2p1_0275F.1_g110510' => 'hma', 'Hma1.2p1_0592F.1_g185490' => 'hma', 'Hma1.2p1_0592F.1_g185500' => 'hma', 'Hma1.2p1_0592F.1_g185510' => 'hma', 'Hma1.2p1_0592F.1_g185520' => 'hma', 'Hma1.2p1_0592F.1_g185530' => 'hma', 'Hma1.2p1_0818F.1_g223450' => 'hma', 'HPP92_009708' => 'vpl', 'HPP92_009793' => 'vpl', 'HPP92_009796' => 'vpl', 'HPP92_009797' => 'vpl', 'HPP92_014940' => 'vpl', 'HPP92_014988' => 'vpl', 'Hund02463' => 'sun', 'Hund02760' => 'sun', 'Hund05071' => 'sun', 'Hund10108' => 'sun', 'Hund11204' => 'sun', 'Hund14016' => 'sun', 'Hund16464' => 'sun', 'Lalb_Chr09g0333391' => 'lal', 'Lalb_Chr11g0070461' => 'lal', 'Lalb_Chr12g0201671' => 'lal', 'Lalb_Chr13g0297161' => 'lal', 'Lj1g0002823' => 'lja', 'Lj3C1074T6' => 'lonja', 'Lj4A212T28' => 'lonja', 'Lj4g0005516' => 'lja', 'Lj4g0013705' => 'lja', 'Lj4g0027865' => 'lja', 'Lj5C92G16' => 'lonja', 'Lj5C92T12' => 'lonja', 'Lj7C596T3' => 'lonja', 'Lj9A446G59' => 'lonja', 'Lj9A482G21' => 'lonja', 'Lsat_1_v5_gn_1_28261' => 'lsa', 'Lsat_1_v5_gn_1_28281' => 'lsa', 'Lsat_1_v5_gn_1_32721' => 'lsa', 'Lsat_1_v5_gn_4_151760' => 'lsa', 'Lsat_1_v5_gn_4_2120' => 'lsa', 'Lsat_1_v5_gn_4_75761' => 'lsa', 'Lsat_1_v5_gn_5_10920' => 'lsa', 'Manes.02G099900' => 'mes', 'Manes.11G096200' => 'mes', 'Manes.12G007200' => 'mes', 'Manes.14G048300' => 'mes', 'Manes.17G114700' => 'mes', 'Mapoly0002s0070' => 'mpo', 'Mapoly0029s0099' => 'mpo', 'MBI07_g24742_MAGBIO' => 'mbi', 'MBI10_g27988_MAGBIO' => 'mbi', 'MBI11_g13057_MAGBIO' => 'mbi', 'MD02G1137200' => 'mdo', 'MD06G1137200' => 'mdo', 'MD07G1122300' => 'mdo', 'MD09G1078200' => 'mdo', 'MD13G1123700' => 'mdo', 'MD14G1151900' => 'mdo', 'MD17G1030900' => 'mdo', 'MD17G1068200' => 'mdo', 'MD17G1068600' => 'mdo', 'Medtr3g077540' => 'mtr', 'Medtr4g105530' => 'mtr', 'Medtr8g076580' => 'mtr', 'Medtr8g076590' => 'mtr', 'Medtr8g096410' => 'mtr', 'MELO3C016411.2' => 'cme', 'MELO3C017780.2' => 'cme', 'MELO3C022560.2' => 'cme', 'MELO3C026187.2' => 'cme', 'MELO3C026286.2' => 'cme', 'MELO3C032854.2' => 'cme', 'Migut.H02495' => 'egut', 'Migut.I00561' => 'egut', 'Migut.K01015' => 'egut', 'Migut.K01016' => 'egut', 'Migut.L00743' => 'egut', 'Migut.L00744' => 'egut', 'Migut.L00746' => 'egut', 'Migut.L00798' => 'egut', 'Migut.L00799' => 'egut', 'Migut.N02096' => 'egut', 'MSTRG.11259' => 'ama', 'MSTRG.23142' => 'ama', 'MSTRG.2499' => 'ama', 'Nitab4.5_0000003g0730' => 'nta', 'Nitab4.5_0000137g0020' => 'nta', 'Nitab4.5_0000721g0210' => 'nta', 'Nitab4.5_0000723g0050' => 'nta', 'Nitab4.5_0000913g0070' => 'nta', 'Nitab4.5_0001332g0040' => 'nta', 'Nitab4.5_0001771g0050' => 'nta', 'Nitab4.5_0001918g0050' => 'nta', 'Nitab4.5_0002686g0030' => 'nta', 'Nitab4.5_0003156g0020' => 'nta', 'Nitab4.5_0003383g0040' => 'nta', 'Nitab4.5_0003918g0010' => 'nta', 'Nitab4.5_0006760g0010' => 'nta', 'Nn1g05981' => 'nnu', 'Nn1g06288' => 'nnu', 'Nn3g16371' => 'nnu', 'Nn3g16786' => 'nnu', 'Nn4g22232' => 'nnu', 'Oeu005144.1' => 'oeu', 'Oeu005145.1' => 'oeu', 'Oeu011348.1' => 'oeu', 'Oeu016415.1' => 'oeu', 'Oeu023501.1' => 'oeu', 'Oeu044473.1' => 'oeu', 'Oeu048892.2' => 'oeu', 'Os01g0549200' => 'osa', 'Os02g0469300' => 'osa', 'Os04g0311100' => 'osa', 'Os06g0474900' => 'osa', 'Os10g0181700' => 'osa', 'Os11g0454800' => 'osa', 'Peaxi162Scf00037g00714' => 'pax', 'Peaxi162Scf00084g01217' => 'pax', 'Peaxi162Scf00257g00217' => 'pax', 'Peaxi162Scf00516g00215' => 'pax', 'Peaxi162Scf00689g00123' => 'pax', 'PGR044G2719' => 'pgr', 'PGR083G1360' => 'pgr', 'PGR102G2849' => 'pgr', 'PGR119G2534' => 'pgr', 'PGSC0003DMG400003538' => 'stu', 'PGSC0003DMG400028138' => 'stu', 'PGSC0003DMG400031732' => 'stu', 'PGSC0003DMG400038165' => 'stu', 'Phvul.002G284600' => 'pvu', 'Phvul.003G258200' => 'pvu', 'Phvul.009G176500' => 'pvu', 'Potri.003G167201' => 'ptr', 'Potri.005G118400' => 'ptr', 'Potri.012G089000' => 'ptr', 'Potri.012G102800' => 'ptr', 'Potri.015G079400' => 'ptr', 'Potri.015G100900' => 'ptr', 'Pp3c14_9810' => 'ppa', 'Pp3c15_10450' => 'ppa', 'Pp3c20_19150' => 'ppa', 'Pp3c23_12740' => 'ppa', 'Pp3c23_6310' => 'ppa', 'Pp3c24_3720' => 'ppa', 'Pp3c27_2580' => 'ppa', 'Pp3c9_8990' => 'ppa', 'PRCOL_00002854' => 'pco', 'Prupe.1G221200' => 'ppe', 'Prupe.3G289000' => 'ppe', 'Prupe.5G147000' => 'ppe', 'Prupe.6G157300' => 'ppe', 'Prupe.7G163400' => 'ppe', 'Psat0s2177g0040' => 'psa', 'Psat3g174760' => 'psa', 'Psat3g192160' => 'psa', 'Psat4g058520' => 'psa', 'Psat4g096840' => 'psa', 'Psat7g037320' => 'psa', 'PSO017G1274' => 'pso', 'PSO017G5166' => 'pso', 'PSO063G4558' => 'pso', 'PSO170G4458' => 'pso', 'PSO170G5005' => 'pso', 'PSO210G6156' => 'pso', 'PSO210G6635' => 'pso', 'PSO210G7397' => 'pso', 'PSO210G7700' => 'pso', 'PSO455G0035' => 'pso', 'PSO455G0180' => 'pso', 'PSO478G4515' => 'pso', 'PSO832G1305' => 'pso', 'PSO832G3489' => 'pso', 'QL02p075247' => 'qlo', 'QL03p051148' => 'qlo', 'QL05p010313' => 'qlo', 'QL06p034627' => 'qlo', 'QL10p001889' => 'qlo', 'QL10p010846' => 'qlo', 'RcHm_v2.0_Chr1g0350621' => 'rch', 'RcHm_v2.0_Chr1g0350641' => 'rch', 'RcHm_v2.0_Chr2g0092891' => 'rch', 'RcHm_v2.0_Chr2g0100251' => 'rch', 'RcHm_v2.0_Chr2g0158661' => 'rch', 'RcHm_v2.0_Chr2g0172741' => 'rch', 'RcHm_v2.0_Chr4g0429571' => 'rch', 'RcHm_v2.0_Chr5g0042471' => 'rch', 'RcHm_v2.0_Chr7g0189451' => 'rch', 'Rhsim08G0052000' => 'rsi', 'Rhsim08G0174400' => 'rsi', 'Rhsim08G0193200' => 'rsi', 'Rhsim10G0214800' => 'rsi', 'Rhsim10G0214900' => 'rsi', 'Rhsim10G0215000' => 'rsi', 'Rhsim12G0022900' => 'rsi', 'Rhsim12G0177500' => 'rsi', 'Rhsim12G0177700' => 'rsi', 'Sabra03G0122600' => 'sbr', 'Sabra05G0097400' => 'sbr', 'Sabra12G0064100' => 'sbr', 'Sabra15G0121300' => 'sbr', 'SalBow2G0642' => 'sbo', 'SalBow5G2667' => 'sbo', 'SalBow5G4873' => 'sbo', 'SalBow8G2395' => 'sbo', 'Sc03g0003290' => 'sci', 'Sc10g0010130' => 'sci', 'Sc22g0003650' => 'sci', 'Sed0001603' => 'sed', 'Sed0004259' => 'sed', 'Sed0006789' => 'sed', 'Sed0011838' => 'sed', 'Sed0012964' => 'sed', 'Sed0016383' => 'sed', 'Sed0019010' => 'sed', 'Sed0020188' => 'sed', 'SEGI_04702' => 'sgi', 'SEGI_17231' => 'sgi', 'SEGI_18877' => 'sgi', 'SEGI_25196' => 'sgi', 'SEGI_25515' => 'sgi', 'SEGI_28445' => 'sgi', 'SEGI_37452' => 'sgi', 'SGA_v2.0_scaffold188G40336' => 'sas', 'SGA_v2.0_scaffold228G43247' => 'sas', 'SGA_v2.0_scaffold280G46853' => 'sas', 'SGA_v2.0_scaffold34G13808' => 'sas', 'SGA_v2.0_scaffold40G15576' => 'sas', 'SGA_v2.0_scaffold611G53188' => 'sas', 'SGA_v2.0_scaffold78G25461' => 'sas', 'SGA_v2.0_scaffold90G27888' => 'sas', 'SHI08601' => 'shi', 'SHI08606' => 'shi', 'SHI17117' => 'shi', 'SHI17119' => 'shi', 'SMO118G0201' => 'smo', 'SMO169G0247' => 'smo', 'SMO176G0006' => 'smo', 'SMO176G0015' => 'smo', 'SMO202G0006' => 'smo', 'SMO240G0050' => 'smo', 'SMO286G0009' => 'smo', 'SMO338G0033' => 'smo', 'SMO356G0533' => 'smo', 'SMO364G0382' => 'smo', 'SMO367G0166' => 'smo', 'SMO367G1098' => 'smo', 'Solyc01g009920.3' => 'sly', 'Solyc01g099300.3' => 'sly', 'Solyc02g084700.3' => 'sly', 'Solyc03g097520.3' => 'sly', 'Solyc06g071580.3' => 'sly', 'Solyc10g081760.3' => 'sly', 'Sopen01g005480' => 'spe', 'Sopen01g042850' => 'spe', 'Sopen02g029370' => 'spe', 'Sopen03g028280' => 'spe', 'Sopen06g027870' => 'spe', 'Sopen10g032270' => 'spe', 'Sp5g18180' => 'spa', 'Sp6g12880' => 'spa', 'Sp6g30850' => 'spa', 'Sp7g22960' => 'spa', 'Sp7g34010' => 'spa', 'SpUn1326_0010' => 'spa', 'TAR371G0242' => 'tar', 'TAR622G0638' => 'tar', 'TAR628G1548' => 'tar', 'TAR629G1079' => 'tar', 'TAR629G3413' => 'tar', 'THA.LOC104804249' => 'tha', 'THA.LOC104808315' => 'tha', 'THA.LOC104809238' => 'tha', 'THA.LOC104825484' => 'tha', 'Thecc.01G025500' => 'tca', 'Thecc.03G015800' => 'tca', 'Thecc.03G018000' => 'tca', 'Thecc.03G134800' => 'tca', 'Thecc.04G014700' => 'tca', 'Thhalv10006991m.g' => 'esa', 'Thhalv10012707m.g' => 'esa', 'Thhalv10015739m.g' => 'esa', 'Thhalv10024553m.g' => 'esa', 'Thhalv10024673m.g' => 'esa', 'Thhalv10029187m.g' => 'esa', 'TPR.G12971' => 'tpr', 'TPR.G29396' => 'tpr', 'TPR.G33376' => 'tpr', 'TPR.G35508' => 'tpr', 'TPR.G35516' => 'tpr', 'TPR.G37317' => 'tpr', 'TPR.G37389' => 'tpr', 'TPR.G37523' => 'tpr', 'TPR.G559' => 'tpr', 'TWI14G0070' => 'twi', 'TWI14G0729' => 'twi', 'TWI18G0596' => 'twi', 'TWI39G0780' => 'twi', 'TWI39G0850' => 'twi', 'TWI73G1052' => 'twi', 'unitig_52.g17485' => 'ugi', 'unitig_61.g26355' => 'ugi', 'vmacro01040' => 'vma', 'vmacro16731' => 'vma', 'vmacro18270' => 'vma', 'vmacro19142' => 'vma', 'vmacro19407' => 'vma', 'vmacro19408' => 'vma', 'vmacro21899' => 'vma', 'vmacro21900' => 'vma', 'vmacro21901' => 'vma', 'VMungo0251G0490' => 'vmu', 'VMungo0251G1748' => 'vmu', 'VMungo1309G0421' => 'vmu', 'Zm00001eb086500' => 'zma', 'Zm00001eb150680' => 'zma', 'Zm00001eb162330' => 'zma', 'Zm00001eb203130' => 'zma', 'Zm00001eb369480' => 'zma', 'Zm00001eb382340' => 'zma', 'Zm00001eb416360' => 'zma' ), 'gf_id' => 'HOM05D000902', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000902' ), 'data_identifier' => 'HOM05D000902', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000902', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '663', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02470' => 'bna', 'A01p16260' => 'bna', 'A02p01680' => 'bna', 'A03p16600' => 'bna', 'A03p55660' => 'bna', 'A03p64160' => 'bna', 'A03p64170' => 'bna', 'A08p31900' => 'bna', 'A09p59530' => 'bna', 'A10p08230' => 'bna', 'A10p25090' => 'bna', 'Aa31LG3G7100' => 'aar', 'Aa31LG3G7110' => 'aar', 'Aa31LG6G13160' => 'aar', 'Aa31LG7G10770' => 'aar', 'Aa31LG7G3830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2723' => 'aag', 'Actinidia08045' => 'ach', 'Actinidia08888' => 'ach', 'Actinidia18333' => 'ach', 'Actinidia19334' => 'ach', 'Actinidia25552' => 'ach', 'Actinidia26089' => 'ach', 'Actinidia30615' => 'ach', 'Actinidia30616' => 'ach', 'Actinidia33083' => 'ach', 'Actinidia35762' => 'ach', 'Ah.02g110620' => 'amhyb', 'Ah.11g046390' => 'amhyb', 'AL1G31670' => 'aly', 'AL6G23730' => 'aly', 'AL7G14740' => 'aly', 'AL7G14750' => 'aly', 'AL7G14760' => 'aly', 'AL7G28220' => 'aly', 'AL8G24940' => 'aly', 'Aqoxy3G01665' => 'aox', 'Aqoxy3G02853' => 'aox', 'Aqoxy5G01513' => 'aox', 'Aqoxy5G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8SKA4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ75LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKDA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0LJZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7REX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZP4YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWX7I5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2QKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS0L9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPCD8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q161UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC7XCF' => 'arhy', 'AT1G19100' => 'ath', 'AT4G24970' => 'ath', 'AT4G36270' => 'ath', 'AT4G36280' => 'ath', 'AT4G36290' => 'ath', 'AT5G13130' => 'ath', 'AT5G50780' => 'ath', 'ATR0582G266' => 'atr', 'ATR0661G195' => 'atr', 'ATR1152G031' => 'atr', 'Atru.chr11.2382' => 'acertr', 'Atru.chr12.2337' => 'acertr', 'Atru.chr3.744' => 'acertr', 'Atru.chr6.1870' => 'acertr', 'Atru.chr9.2515' => 'acertr', 'AUR62004120' => 'cqu', 'AUR62005667' => 'cqu', 'AUR62007634' => 'cqu', 'AUR62008186' => 'cqu', 'AUR62008187' => 'cqu', 'AUR62008188' => 'cqu', 'AUR62027954' => 'cqu', 'AUR62028766' => 'cqu', 'AUR62028767' => 'cqu', 'AUR62028768' => 'cqu', 'AUR62028886' => 'cqu', 'AUR62029563' => 'cqu', 'AUR62038832' => 'cqu', 'BcaB01g04149' => 'bca', 'BcaB03g12940' => 'bca', 'BcaB03g13090' => 'bca', 'BcaB03g14466' => 'bca', 'BcaB05g24035' => 'bca', 'BcaC01g06050' => 'bca', 'BcaC04g19148' => 'bca', 'BcaC04g20761' => 'bca', 'BcaC06g32845' => 'bca', 'BcaC07g41274' => 'bca', 'BcaC09g50827' => 'bca', 'BcaNung00741' => 'bca', 'BcaNung00742' => 'bca', 'BcaNung01859' => 'bca', 'BcaNung03985' => 'bca', 'BcaNung03989' => 'bca', 'BcaNung05661' => 'bca', 'BolC1t00257H' => 'bol', 'BolC1t01956H' => 'bol', 'BolC2t06534H' => 'bol', 'BolC3t14334H' => 'bol', 'BolC5t30451H' => 'bol', 'BolC7t45880H' => 'bol', 'BolC7t46586H' => 'bol', 'BolC8t49301H' => 'bol', 'BolC8t51837H' => 'bol', 'BolC9t56822H' => 'bol', 'BolC9t59235H' => 'bol', 'BraA01t00234Z' => 'bra', 'BraA01t01563Z' => 'bra', 'BraA02t05147Z' => 'bra', 'BraA03t10947Z' => 'bra', 'BraA03t14633Z' => 'bra', 'BraA08t35112Z' => 'bra', 'BraA09t41330Z' => 'bra', 'BraA10t44570Z' => 'bra', 'C01p02670' => 'bna', 'C01p20260' => 'bna', 'C02p05890' => 'bna', 'C03p19530' => 'bna', 'C05p17470' => 'bna', 'C07p53900' => 'bna', 'C07p61630' => 'bna', 'C08p16800' => 'bna', 'C08p42810' => 'bna', 'C09p39480' => 'bna', 'C09p63980' => 'bna', 'CAN.G1001.7' => 'can', 'CAN.G1034.55' => 'can', 'CAN.G143.7' => 'can', 'CAN.G3340.1' => 'can', 'CAN.G358.19' => 'can', 'CAN.G373.2' => 'can', 'CAN.G674.16' => 'can', 'CAN.G674.17' => 'can', 'CAN.G674.18' => 'can', 'CAN.G732.2' => 'can', 'CAN.G732.3' => 'can', 'CAN.G993.39' => 'can', 'CANSAT01G2052' => 'cansat', 'CANSAT80G0070' => 'cansat', 'CANSAT80G0483' => 'cansat', 'CANSAT80G0625' => 'cansat', 'CARHR019690' => 'chi', 'CARHR080280' => 'chi', 'CARHR152750' => 'chi', 'CARHR152760' => 'chi', 'CARHR152770' => 'chi', 'CARHR200340' => 'chi', 'CARHR232370' => 'chi', 'CARHR244670' => 'chi', 'CARHR244680' => 'chi', 'CARHR257520' => 'chi', 'Carub.0001s1872' => 'cru', 'Carub.0006s1130' => 'cru', 'Carub.0007s0396' => 'cru', 'Carub.0007s0397' => 'cru', 'Carub.0007s1608' => 'cru', 'Carub.0008s1068' => 'cru', 'Carub.0008s1077' => 'cru', 'Ca_16158_v3' => 'car', 'Ca_17571_v3' => 'car', 'Ca_21936_v3' => 'car', 'Ca_22350_v3' => 'car', 'CBR_g22445' => 'cbr', 'CBR_g26290' => 'cbr', 'Cc04_g09610' => 'ccan', 'Cc04_g12280' => 'ccan', 'Cc07_g10230' => 'ccan', 'CDE02G0093' => 'cde', 'CDE02G0701' => 'cde', 'CDE04G1050' => 'cde', 'CDE05G1833' => 'cde', 'CDE05G3058' => 'cde', 'CDE05G3380' => 'cde', 'CDE06G0536' => 'cde', 'Cfa006923' => 'cfa', 'Cfa009402' => 'cfa', 'Cfa018751' => 'cfa', 'Cfa019164' => 'cfa', 'Cfa022935' => 'cfa', 'Ciclev10019081m.g' => 'ccl', 'Ciclev10025076m.g' => 'ccl', 'Ciclev10030712m.g' => 'ccl', 'Ciclev10033760m.g' => 'ccl', 'CiPaw.05G105600' => 'cil', 'CiPaw.08G136700' => 'cil', 'CiPaw.11G003900' => 'cil', 'CiPaw.11G023700' => 'cil', 'CiPaw.12G003700' => 'cil', 'ClCG06G017100' => 'cla', 'ClCG06G018110' => 'cla', 'ClCG07G008800' => 'cla', 'ClCG07G015330' => 'cla', 'COL.COLO4_13698' => 'col', 'COL.COLO4_16659' => 'col', 'COL.COLO4_21986' => 'col', 'COL.COLO4_24049' => 'col', 'COL.COLO4_29061' => 'col', 'COL.COLO4_29075' => 'col', 'COL.COLO4_30094' => 'col', 'Cpa.g.c33689' => 'cpa', 'Cpa.g.sc108.39' => 'cpa', 'Cpa.g.sc108.41' => 'cpa', 'Cpa.g.sc1163.1' => 'cpa', 'Cpa.g.sc4.155' => 'cpa', 'Cpa.g.sc6.194' => 'cpa', 'CsaV3_1G000340' => 'csa', 'CsaV3_1G001400' => 'csa', 'CsaV3_4G002220' => 'csa', 'CsaV3_4G005370' => 'csa', 'CSS0007487' => 'camsi', 'CSS0008066' => 'camsi', 'CSS0009120' => 'camsi', 'CSS0015512' => 'camsi', 'CSS0022409' => 'camsi', 'CSS0025358' => 'camsi', 'CSS0044547' => 'camsi', 'DCAR_013057' => 'dca', 'DCAR_015058' => 'dca', 'DCAR_016027' => 'dca', 'DCAR_017327' => 'dca', 'DCAR_020743' => 'dca', 'DCAR_026157' => 'dca', 'DCAR_032339' => 'dca', 'DCAR_032340' => 'dca', 'Dinv11200' => 'din', 'Dinv11201' => 'din', 'Dinv20631' => 'din', 'Dinv23182' => 'din', 'Dinv33466' => 'din', 'Dinv33583' => 'din', 'Dinv38565' => 'din', 'Duzib068G0200' => 'dzi', 'Duzib147G0132' => 'dzi', 'Duzib147G0635' => 'dzi', 'Duzib205G1670' => 'dzi', 'Duzib251G0606' => 'dzi', 'ECA232G3336' => 'eca', 'ECA232G3763' => 'eca', 'ECA232G4845' => 'eca', 'ECA234G1607' => 'eca', 'ECA246G0932' => 'eca', 'ECA247G0781' => 'eca', 'ECA247G1932' => 'eca', 'ECA247G2079' => 'eca', 'ECA247G3338' => 'eca', 'ECA247G4115' => 'eca', 'EL10Ac3g06552' => 'bvu', 'EL10Ac5g10721' => 'bvu', 'EL10Ac5g10722' => 'bvu', 'EL10Ac5g10723' => 'bvu', 'EL10Ac5g11361' => 'bvu', 'EL10Ac6g13553' => 'bvu', 'EL10As8g23872' => 'bvu', 'Eucgr.B00250' => 'egr', 'Eucgr.B00251' => 'egr', 'Eucgr.B03533' => 'egr', 'Eucgr.I02381' => 'egr', 'Eucgr.K02700' => 'egr', 'FAN02G0174' => 'fan', 'FAN02G3146' => 'fan', 'FAN04G1672' => 'fan', 'FAN04G2273' => 'fan', 'FAN05G2791' => 'fan', 'FAN05G4035' => 'fan', 'FAN07G0834' => 'fan', 'FAN08G1198' => 'fan', 'FAN09G4182' => 'fan', 'FAN12G0496' => 'fan', 'FAN13G1027' => 'fan', 'FAN13G2951' => 'fan', 'FAN14G0705' => 'fan', 'FAN14G0720' => 'fan', 'FAN17G0201' => 'fan', 'FAN17G2665' => 'fan', 'FAN18G1456' => 'fan', 'FAN18G1525' => 'fan', 'FAN18G3500' => 'fan', 'FAN28G2670' => 'fan', 'FvH4_1g12391' => 'fve', 'FvH4_4g23220' => 'fve', 'FvH4_5g08810' => 'fve', 'FvH4_5g28960' => 'fve', 'FvH4_6g42820' => 'fve', 'FvH4_6g51110' => 'fve', 'Glyma.02G051802' => 'gma', 'Glyma.04G185300' => 'gma', 'Glyma.05G202900' => 'gma', 'Glyma.08G010300' => 'gma', 'Glyma.16G131900' => 'gma', 'Glyma.17G087900' => 'gma', 'Gohir.A07G048600' => 'ghi', 'Gohir.A11G179000' => 'ghi', 'Gohir.A12G140900' => 'ghi', 'Gohir.A12G140950' => 'ghi', 'Gohir.A12G191700' => 'ghi', 'Gohir.A13G086300' => 'ghi', 'Gohir.D07G052900' => 'ghi', 'Gohir.D11G186600' => 'ghi', 'Gohir.D12G145575' => 'ghi', 'Gohir.D12G145650' => 'ghi', 'Gohir.D12G145725' => 'ghi', 'Gohir.D12G194050' => 'ghi', 'Gohir.D13G091800' => 'ghi', 'Gorai.001G055900' => 'gra', 'Gorai.007G198400' => 'gra', 'Gorai.008G157000' => 'gra', 'Gorai.008G157100' => 'gra', 'Gorai.008G208700' => 'gra', 'Gorai.010G138700' => 'gra', 'GSVIVG01000977001' => 'vvi', 'GSVIVG01007708001' => 'vvi', 'GSVIVG01008587001' => 'vvi', 'GSVIVG01018849001' => 'vvi', 'GSVIVG01032432001' => 'vvi', 'HanXRQChr02g0034131' => 'han', 'HanXRQChr02g0035981' => 'han', 'HanXRQChr02g0035991' => 'han', 'HanXRQChr05g0155611' => 'han', 'HanXRQChr05g0155621' => 'han', 'HanXRQChr08g0236501' => 'han', 'HanXRQChr09g0261321' => 'han', 'HanXRQChr09g0272081' => 'han', 'HanXRQChr10g0310741' => 'han', 'HanXRQChr11g0325591' => 'han', 'HanXRQChr12g0385691' => 'han', 'HanXRQChr13g0387801' => 'han', 'HanXRQChr15g0463011' => 'han', 'Haze_03826' => 'cav', 'Haze_03827' => 'cav', 'Haze_07183' => 'cav', 'Haze_07537' => 'cav', 'Haze_07539' => 'cav', 'Haze_12461' => 'cav', 'Haze_16115' => 'cav', 'Haze_16808' => 'cav', 'Haze_18531' => 'cav', 'Hma1.2p1_0046F.1_g026700' => 'hma', 'Hma1.2p1_0046F.1_g026710' => 'hma', 'Hma1.2p1_0168F.1_g074340' => 'hma', 'Hma1.2p1_0266F.1_g107030' => 'hma', 'Hma1.2p1_0266F.1_g107060' => 'hma', 'Hma1.2p1_0275F.1_g110510' => 'hma', 'Hma1.2p1_0592F.1_g185490' => 'hma', 'Hma1.2p1_0592F.1_g185500' => 'hma', 'Hma1.2p1_0592F.1_g185510' => 'hma', 'Hma1.2p1_0592F.1_g185520' => 'hma', 'Hma1.2p1_0592F.1_g185530' => 'hma', 'Hma1.2p1_0818F.1_g223450' => 'hma', 'HPP92_009708' => 'vpl', 'HPP92_009793' => 'vpl', 'HPP92_009796' => 'vpl', 'HPP92_009797' => 'vpl', 'HPP92_014940' => 'vpl', 'HPP92_014988' => 'vpl', 'Hund02463' => 'sun', 'Hund02760' => 'sun', 'Hund05071' => 'sun', 'Hund10108' => 'sun', 'Hund11204' => 'sun', 'Hund14016' => 'sun', 'Hund16464' => 'sun', 'Lalb_Chr09g0333391' => 'lal', 'Lalb_Chr11g0070461' => 'lal', 'Lalb_Chr12g0201671' => 'lal', 'Lalb_Chr13g0297161' => 'lal', 'Lj1g0002823' => 'lja', 'Lj3C1074T6' => 'lonja', 'Lj4A212T28' => 'lonja', 'Lj4g0005516' => 'lja', 'Lj4g0013705' => 'lja', 'Lj4g0027865' => 'lja', 'Lj5C92G16' => 'lonja', 'Lj5C92T12' => 'lonja', 'Lj7C596T3' => 'lonja', 'Lj9A446G59' => 'lonja', 'Lj9A482G21' => 'lonja', 'Lsat_1_v5_gn_1_28261' => 'lsa', 'Lsat_1_v5_gn_1_28281' => 'lsa', 'Lsat_1_v5_gn_1_32721' => 'lsa', 'Lsat_1_v5_gn_4_151760' => 'lsa', 'Lsat_1_v5_gn_4_2120' => 'lsa', 'Lsat_1_v5_gn_4_75761' => 'lsa', 'Lsat_1_v5_gn_5_10920' => 'lsa', 'Manes.02G099900' => 'mes', 'Manes.11G096200' => 'mes', 'Manes.12G007200' => 'mes', 'Manes.14G048300' => 'mes', 'Manes.17G114700' => 'mes', 'Mapoly0002s0070' => 'mpo', 'Mapoly0029s0099' => 'mpo', 'MBI07_g24742_MAGBIO' => 'mbi', 'MBI10_g27988_MAGBIO' => 'mbi', 'MBI11_g13057_MAGBIO' => 'mbi', 'MD02G1137200' => 'mdo', 'MD06G1137200' => 'mdo', 'MD07G1122300' => 'mdo', 'MD09G1078200' => 'mdo', 'MD13G1123700' => 'mdo', 'MD14G1151900' => 'mdo', 'MD17G1030900' => 'mdo', 'MD17G1068200' => 'mdo', 'MD17G1068600' => 'mdo', 'Medtr3g077540' => 'mtr', 'Medtr4g105530' => 'mtr', 'Medtr8g076580' => 'mtr', 'Medtr8g076590' => 'mtr', 'Medtr8g096410' => 'mtr', 'MELO3C016411.2' => 'cme', 'MELO3C017780.2' => 'cme', 'MELO3C022560.2' => 'cme', 'MELO3C026187.2' => 'cme', 'MELO3C026286.2' => 'cme', 'MELO3C032854.2' => 'cme', 'Migut.H02495' => 'egut', 'Migut.I00561' => 'egut', 'Migut.K01015' => 'egut', 'Migut.K01016' => 'egut', 'Migut.L00743' => 'egut', 'Migut.L00744' => 'egut', 'Migut.L00746' => 'egut', 'Migut.L00798' => 'egut', 'Migut.L00799' => 'egut', 'Migut.N02096' => 'egut', 'MSTRG.11259' => 'ama', 'MSTRG.23142' => 'ama', 'MSTRG.2499' => 'ama', 'Nitab4.5_0000003g0730' => 'nta', 'Nitab4.5_0000137g0020' => 'nta', 'Nitab4.5_0000721g0210' => 'nta', 'Nitab4.5_0000723g0050' => 'nta', 'Nitab4.5_0000913g0070' => 'nta', 'Nitab4.5_0001332g0040' => 'nta', 'Nitab4.5_0001771g0050' => 'nta', 'Nitab4.5_0001918g0050' => 'nta', 'Nitab4.5_0002686g0030' => 'nta', 'Nitab4.5_0003156g0020' => 'nta', 'Nitab4.5_0003383g0040' => 'nta', 'Nitab4.5_0003918g0010' => 'nta', 'Nitab4.5_0006760g0010' => 'nta', 'Nn1g05981' => 'nnu', 'Nn1g06288' => 'nnu', 'Nn3g16371' => 'nnu', 'Nn3g16786' => 'nnu', 'Nn4g22232' => 'nnu', 'Oeu005144.1' => 'oeu', 'Oeu005145.1' => 'oeu', 'Oeu011348.1' => 'oeu', 'Oeu016415.1' => 'oeu', 'Oeu023501.1' => 'oeu', 'Oeu044473.1' => 'oeu', 'Oeu048892.2' => 'oeu', 'Os01g0549200' => 'osa', 'Os02g0469300' => 'osa', 'Os04g0311100' => 'osa', 'Os06g0474900' => 'osa', 'Os10g0181700' => 'osa', 'Os11g0454800' => 'osa', 'Peaxi162Scf00037g00714' => 'pax', 'Peaxi162Scf00084g01217' => 'pax', 'Peaxi162Scf00257g00217' => 'pax', 'Peaxi162Scf00516g00215' => 'pax', 'Peaxi162Scf00689g00123' => 'pax', 'PGR044G2719' => 'pgr', 'PGR083G1360' => 'pgr', 'PGR102G2849' => 'pgr', 'PGR119G2534' => 'pgr', 'PGSC0003DMG400003538' => 'stu', 'PGSC0003DMG400028138' => 'stu', 'PGSC0003DMG400031732' => 'stu', 'PGSC0003DMG400038165' => 'stu', 'Phvul.002G284600' => 'pvu', 'Phvul.003G258200' => 'pvu', 'Phvul.009G176500' => 'pvu', 'Potri.003G167201' => 'ptr', 'Potri.005G118400' => 'ptr', 'Potri.012G089000' => 'ptr', 'Potri.012G102800' => 'ptr', 'Potri.015G079400' => 'ptr', 'Potri.015G100900' => 'ptr', 'Pp3c14_9810' => 'ppa', 'Pp3c15_10450' => 'ppa', 'Pp3c20_19150' => 'ppa', 'Pp3c23_12740' => 'ppa', 'Pp3c23_6310' => 'ppa', 'Pp3c24_3720' => 'ppa', 'Pp3c27_2580' => 'ppa', 'Pp3c9_8990' => 'ppa', 'PRCOL_00002854' => 'pco', 'Prupe.1G221200' => 'ppe', 'Prupe.3G289000' => 'ppe', 'Prupe.5G147000' => 'ppe', 'Prupe.6G157300' => 'ppe', 'Prupe.7G163400' => 'ppe', 'Psat0s2177g0040' => 'psa', 'Psat3g174760' => 'psa', 'Psat3g192160' => 'psa', 'Psat4g058520' => 'psa', 'Psat4g096840' => 'psa', 'Psat7g037320' => 'psa', 'PSO017G1274' => 'pso', 'PSO017G5166' => 'pso', 'PSO063G4558' => 'pso', 'PSO170G4458' => 'pso', 'PSO170G5005' => 'pso', 'PSO210G6156' => 'pso', 'PSO210G6635' => 'pso', 'PSO210G7397' => 'pso', 'PSO210G7700' => 'pso', 'PSO455G0035' => 'pso', 'PSO455G0180' => 'pso', 'PSO478G4515' => 'pso', 'PSO832G1305' => 'pso', 'PSO832G3489' => 'pso', 'QL02p075247' => 'qlo', 'QL03p051148' => 'qlo', 'QL05p010313' => 'qlo', 'QL06p034627' => 'qlo', 'QL10p001889' => 'qlo', 'QL10p010846' => 'qlo', 'RcHm_v2.0_Chr1g0350621' => 'rch', 'RcHm_v2.0_Chr1g0350641' => 'rch', 'RcHm_v2.0_Chr2g0092891' => 'rch', 'RcHm_v2.0_Chr2g0100251' => 'rch', 'RcHm_v2.0_Chr2g0158661' => 'rch', 'RcHm_v2.0_Chr2g0172741' => 'rch', 'RcHm_v2.0_Chr4g0429571' => 'rch', 'RcHm_v2.0_Chr5g0042471' => 'rch', 'RcHm_v2.0_Chr7g0189451' => 'rch', 'Rhsim08G0052000' => 'rsi', 'Rhsim08G0174400' => 'rsi', 'Rhsim08G0193200' => 'rsi', 'Rhsim10G0214800' => 'rsi', 'Rhsim10G0214900' => 'rsi', 'Rhsim10G0215000' => 'rsi', 'Rhsim12G0022900' => 'rsi', 'Rhsim12G0177500' => 'rsi', 'Rhsim12G0177700' => 'rsi', 'Sabra03G0122600' => 'sbr', 'Sabra05G0097400' => 'sbr', 'Sabra12G0064100' => 'sbr', 'Sabra15G0121300' => 'sbr', 'SalBow2G0642' => 'sbo', 'SalBow5G2667' => 'sbo', 'SalBow5G4873' => 'sbo', 'SalBow8G2395' => 'sbo', 'Sc03g0003290' => 'sci', 'Sc10g0010130' => 'sci', 'Sc22g0003650' => 'sci', 'Sed0001603' => 'sed', 'Sed0004259' => 'sed', 'Sed0006789' => 'sed', 'Sed0011838' => 'sed', 'Sed0012964' => 'sed', 'Sed0016383' => 'sed', 'Sed0019010' => 'sed', 'Sed0020188' => 'sed', 'SEGI_04702' => 'sgi', 'SEGI_17231' => 'sgi', 'SEGI_18877' => 'sgi', 'SEGI_25196' => 'sgi', 'SEGI_25515' => 'sgi', 'SEGI_28445' => 'sgi', 'SEGI_37452' => 'sgi', 'SGA_v2.0_scaffold188G40336' => 'sas', 'SGA_v2.0_scaffold228G43247' => 'sas', 'SGA_v2.0_scaffold280G46853' => 'sas', 'SGA_v2.0_scaffold34G13808' => 'sas', 'SGA_v2.0_scaffold40G15576' => 'sas', 'SGA_v2.0_scaffold611G53188' => 'sas', 'SGA_v2.0_scaffold78G25461' => 'sas', 'SGA_v2.0_scaffold90G27888' => 'sas', 'SHI08601' => 'shi', 'SHI08606' => 'shi', 'SHI17117' => 'shi', 'SHI17119' => 'shi', 'SMO118G0201' => 'smo', 'SMO169G0247' => 'smo', 'SMO176G0006' => 'smo', 'SMO176G0015' => 'smo', 'SMO202G0006' => 'smo', 'SMO240G0050' => 'smo', 'SMO286G0009' => 'smo', 'SMO338G0033' => 'smo', 'SMO356G0533' => 'smo', 'SMO364G0382' => 'smo', 'SMO367G0166' => 'smo', 'SMO367G1098' => 'smo', 'Solyc01g009920.3' => 'sly', 'Solyc01g099300.3' => 'sly', 'Solyc02g084700.3' => 'sly', 'Solyc03g097520.3' => 'sly', 'Solyc06g071580.3' => 'sly', 'Solyc10g081760.3' => 'sly', 'Sopen01g005480' => 'spe', 'Sopen01g042850' => 'spe', 'Sopen02g029370' => 'spe', 'Sopen03g028280' => 'spe', 'Sopen06g027870' => 'spe', 'Sopen10g032270' => 'spe', 'Sp5g18180' => 'spa', 'Sp6g12880' => 'spa', 'Sp6g30850' => 'spa', 'Sp7g22960' => 'spa', 'Sp7g34010' => 'spa', 'SpUn1326_0010' => 'spa', 'TAR371G0242' => 'tar', 'TAR622G0638' => 'tar', 'TAR628G1548' => 'tar', 'TAR629G1079' => 'tar', 'TAR629G3413' => 'tar', 'THA.LOC104804249' => 'tha', 'THA.LOC104808315' => 'tha', 'THA.LOC104809238' => 'tha', 'THA.LOC104825484' => 'tha', 'Thecc.01G025500' => 'tca', 'Thecc.03G015800' => 'tca', 'Thecc.03G018000' => 'tca', 'Thecc.03G134800' => 'tca', 'Thecc.04G014700' => 'tca', 'Thhalv10006991m.g' => 'esa', 'Thhalv10012707m.g' => 'esa', 'Thhalv10015739m.g' => 'esa', 'Thhalv10024553m.g' => 'esa', 'Thhalv10024673m.g' => 'esa', 'Thhalv10029187m.g' => 'esa', 'TPR.G12971' => 'tpr', 'TPR.G29396' => 'tpr', 'TPR.G33376' => 'tpr', 'TPR.G35508' => 'tpr', 'TPR.G35516' => 'tpr', 'TPR.G37317' => 'tpr', 'TPR.G37389' => 'tpr', 'TPR.G37523' => 'tpr', 'TPR.G559' => 'tpr', 'TWI14G0070' => 'twi', 'TWI14G0729' => 'twi', 'TWI18G0596' => 'twi', 'TWI39G0780' => 'twi', 'TWI39G0850' => 'twi', 'TWI73G1052' => 'twi', 'unitig_52.g17485' => 'ugi', 'unitig_61.g26355' => 'ugi', 'vmacro01040' => 'vma', 'vmacro16731' => 'vma', 'vmacro18270' => 'vma', 'vmacro19142' => 'vma', 'vmacro19407' => 'vma', 'vmacro19408' => 'vma', 'vmacro21899' => 'vma', 'vmacro21900' => 'vma', 'vmacro21901' => 'vma', 'VMungo0251G0490' => 'vmu', 'VMungo0251G1748' => 'vmu', 'VMungo1309G0421' => 'vmu', 'Zm00001eb086500' => 'zma', 'Zm00001eb150680' => 'zma', 'Zm00001eb162330' => 'zma', 'Zm00001eb203130' => 'zma', 'Zm00001eb369480' => 'zma', 'Zm00001eb382340' => 'zma', 'Zm00001eb416360' => 'zma' ) $gf_id = 'HOM05D000902' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000902' ) $data_identifier = 'HOM05D000902' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 13, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 10, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 6, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 9, 'hma' => (int) 12, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 4, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 6, 'ppa' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 6, 'rch' => (int) 9, 'rsi' => (int) 9, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 12, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 3, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416360' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000902', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '663', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02470' => 'bna', 'A01p16260' => 'bna', 'A02p01680' => 'bna', 'A03p16600' => 'bna', 'A03p55660' => 'bna', 'A03p64160' => 'bna', 'A03p64170' => 'bna', 'A08p31900' => 'bna', 'A09p59530' => 'bna', 'A10p08230' => 'bna', 'A10p25090' => 'bna', 'Aa31LG3G7100' => 'aar', 'Aa31LG3G7110' => 'aar', 'Aa31LG6G13160' => 'aar', 'Aa31LG7G10770' => 'aar', 'Aa31LG7G3830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2723' => 'aag', 'Actinidia08045' => 'ach', 'Actinidia08888' => 'ach', 'Actinidia18333' => 'ach', 'Actinidia19334' => 'ach', 'Actinidia25552' => 'ach', 'Actinidia26089' => 'ach', 'Actinidia30615' => 'ach', 'Actinidia30616' => 'ach', 'Actinidia33083' => 'ach', 'Actinidia35762' => 'ach', 'Ah.02g110620' => 'amhyb', 'Ah.11g046390' => 'amhyb', 'AL1G31670' => 'aly', 'AL6G23730' => 'aly', 'AL7G14740' => 'aly', 'AL7G14750' => 'aly', 'AL7G14760' => 'aly', 'AL7G28220' => 'aly', 'AL8G24940' => 'aly', 'Aqoxy3G01665' => 'aox', 'Aqoxy3G02853' => 'aox', 'Aqoxy5G01513' => 'aox', 'Aqoxy5G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8SKA4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ75LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKDA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0LJZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7REX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZP4YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWX7I5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2QKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS0L9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPCD8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q161UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC7XCF' => 'arhy', 'AT1G19100' => 'ath', 'AT4G24970' => 'ath', 'AT4G36270' => 'ath', 'AT4G36280' => 'ath', 'AT4G36290' => 'ath', 'AT5G13130' => 'ath', 'AT5G50780' => 'ath', 'ATR0582G266' => 'atr', 'ATR0661G195' => 'atr', 'ATR1152G031' => 'atr', 'Atru.chr11.2382' => 'acertr', 'Atru.chr12.2337' => 'acertr', 'Atru.chr3.744' => 'acertr', 'Atru.chr6.1870' => 'acertr', 'Atru.chr9.2515' => 'acertr', 'AUR62004120' => 'cqu', 'AUR62005667' => 'cqu', 'AUR62007634' => 'cqu', 'AUR62008186' => 'cqu', 'AUR62008187' => 'cqu', 'AUR62008188' => 'cqu', 'AUR62027954' => 'cqu', 'AUR62028766' => 'cqu', 'AUR62028767' => 'cqu', 'AUR62028768' => 'cqu', 'AUR62028886' => 'cqu', 'AUR62029563' => 'cqu', 'AUR62038832' => 'cqu', 'BcaB01g04149' => 'bca', 'BcaB03g12940' => 'bca', 'BcaB03g13090' => 'bca', 'BcaB03g14466' => 'bca', 'BcaB05g24035' => 'bca', 'BcaC01g06050' => 'bca', 'BcaC04g19148' => 'bca', 'BcaC04g20761' => 'bca', 'BcaC06g32845' => 'bca', 'BcaC07g41274' => 'bca', 'BcaC09g50827' => 'bca', 'BcaNung00741' => 'bca', 'BcaNung00742' => 'bca', 'BcaNung01859' => 'bca', 'BcaNung03985' => 'bca', 'BcaNung03989' => 'bca', 'BcaNung05661' => 'bca', 'BolC1t00257H' => 'bol', 'BolC1t01956H' => 'bol', 'BolC2t06534H' => 'bol', 'BolC3t14334H' => 'bol', 'BolC5t30451H' => 'bol', 'BolC7t45880H' => 'bol', 'BolC7t46586H' => 'bol', 'BolC8t49301H' => 'bol', 'BolC8t51837H' => 'bol', 'BolC9t56822H' => 'bol', 'BolC9t59235H' => 'bol', 'BraA01t00234Z' => 'bra', 'BraA01t01563Z' => 'bra', 'BraA02t05147Z' => 'bra', 'BraA03t10947Z' => 'bra', 'BraA03t14633Z' => 'bra', 'BraA08t35112Z' => 'bra', 'BraA09t41330Z' => 'bra', 'BraA10t44570Z' => 'bra', 'C01p02670' => 'bna', 'C01p20260' => 'bna', 'C02p05890' => 'bna', 'C03p19530' => 'bna', 'C05p17470' => 'bna', 'C07p53900' => 'bna', 'C07p61630' => 'bna', 'C08p16800' => 'bna', 'C08p42810' => 'bna', 'C09p39480' => 'bna', 'C09p63980' => 'bna', 'CAN.G1001.7' => 'can', 'CAN.G1034.55' => 'can', 'CAN.G143.7' => 'can', 'CAN.G3340.1' => 'can', 'CAN.G358.19' => 'can', 'CAN.G373.2' => 'can', 'CAN.G674.16' => 'can', 'CAN.G674.17' => 'can', 'CAN.G674.18' => 'can', 'CAN.G732.2' => 'can', 'CAN.G732.3' => 'can', 'CAN.G993.39' => 'can', 'CANSAT01G2052' => 'cansat', 'CANSAT80G0070' => 'cansat', 'CANSAT80G0483' => 'cansat', 'CANSAT80G0625' => 'cansat', 'CARHR019690' => 'chi', 'CARHR080280' => 'chi', 'CARHR152750' => 'chi', 'CARHR152760' => 'chi', 'CARHR152770' => 'chi', 'CARHR200340' => 'chi', 'CARHR232370' => 'chi', 'CARHR244670' => 'chi', 'CARHR244680' => 'chi', 'CARHR257520' => 'chi', 'Carub.0001s1872' => 'cru', 'Carub.0006s1130' => 'cru', 'Carub.0007s0396' => 'cru', 'Carub.0007s0397' => 'cru', 'Carub.0007s1608' => 'cru', 'Carub.0008s1068' => 'cru', 'Carub.0008s1077' => 'cru', 'Ca_16158_v3' => 'car', 'Ca_17571_v3' => 'car', 'Ca_21936_v3' => 'car', 'Ca_22350_v3' => 'car', 'CBR_g22445' => 'cbr', 'CBR_g26290' => 'cbr', 'Cc04_g09610' => 'ccan', 'Cc04_g12280' => 'ccan', 'Cc07_g10230' => 'ccan', 'CDE02G0093' => 'cde', 'CDE02G0701' => 'cde', 'CDE04G1050' => 'cde', 'CDE05G1833' => 'cde', 'CDE05G3058' => 'cde', 'CDE05G3380' => 'cde', 'CDE06G0536' => 'cde', 'Cfa006923' => 'cfa', 'Cfa009402' => 'cfa', 'Cfa018751' => 'cfa', 'Cfa019164' => 'cfa', 'Cfa022935' => 'cfa', 'Ciclev10019081m.g' => 'ccl', 'Ciclev10025076m.g' => 'ccl', 'Ciclev10030712m.g' => 'ccl', 'Ciclev10033760m.g' => 'ccl', 'CiPaw.05G105600' => 'cil', 'CiPaw.08G136700' => 'cil', 'CiPaw.11G003900' => 'cil', 'CiPaw.11G023700' => 'cil', 'CiPaw.12G003700' => 'cil', 'ClCG06G017100' => 'cla', 'ClCG06G018110' => 'cla', 'ClCG07G008800' => 'cla', 'ClCG07G015330' => 'cla', 'COL.COLO4_13698' => 'col', 'COL.COLO4_16659' => 'col', 'COL.COLO4_21986' => 'col', 'COL.COLO4_24049' => 'col', 'COL.COLO4_29061' => 'col', 'COL.COLO4_29075' => 'col', 'COL.COLO4_30094' => 'col', 'Cpa.g.c33689' => 'cpa', 'Cpa.g.sc108.39' => 'cpa', 'Cpa.g.sc108.41' => 'cpa', 'Cpa.g.sc1163.1' => 'cpa', 'Cpa.g.sc4.155' => 'cpa', 'Cpa.g.sc6.194' => 'cpa', 'CsaV3_1G000340' => 'csa', 'CsaV3_1G001400' => 'csa', 'CsaV3_4G002220' => 'csa', 'CsaV3_4G005370' => 'csa', 'CSS0007487' => 'camsi', 'CSS0008066' => 'camsi', 'CSS0009120' => 'camsi', 'CSS0015512' => 'camsi', 'CSS0022409' => 'camsi', 'CSS0025358' => 'camsi', 'CSS0044547' => 'camsi', 'DCAR_013057' => 'dca', 'DCAR_015058' => 'dca', 'DCAR_016027' => 'dca', 'DCAR_017327' => 'dca', 'DCAR_020743' => 'dca', 'DCAR_026157' => 'dca', 'DCAR_032339' => 'dca', 'DCAR_032340' => 'dca', 'Dinv11200' => 'din', 'Dinv11201' => 'din', 'Dinv20631' => 'din', 'Dinv23182' => 'din', 'Dinv33466' => 'din', 'Dinv33583' => 'din', 'Dinv38565' => 'din', 'Duzib068G0200' => 'dzi', 'Duzib147G0132' => 'dzi', 'Duzib147G0635' => 'dzi', 'Duzib205G1670' => 'dzi', 'Duzib251G0606' => 'dzi', 'ECA232G3336' => 'eca', 'ECA232G3763' => 'eca', 'ECA232G4845' => 'eca', 'ECA234G1607' => 'eca', 'ECA246G0932' => 'eca', 'ECA247G0781' => 'eca', 'ECA247G1932' => 'eca', 'ECA247G2079' => 'eca', 'ECA247G3338' => 'eca', 'ECA247G4115' => 'eca', 'EL10Ac3g06552' => 'bvu', 'EL10Ac5g10721' => 'bvu', 'EL10Ac5g10722' => 'bvu', 'EL10Ac5g10723' => 'bvu', 'EL10Ac5g11361' => 'bvu', 'EL10Ac6g13553' => 'bvu', 'EL10As8g23872' => 'bvu', 'Eucgr.B00250' => 'egr', 'Eucgr.B00251' => 'egr', 'Eucgr.B03533' => 'egr', 'Eucgr.I02381' => 'egr', 'Eucgr.K02700' => 'egr', 'FAN02G0174' => 'fan', 'FAN02G3146' => 'fan', 'FAN04G1672' => 'fan', 'FAN04G2273' => 'fan', 'FAN05G2791' => 'fan', 'FAN05G4035' => 'fan', 'FAN07G0834' => 'fan', 'FAN08G1198' => 'fan', 'FAN09G4182' => 'fan', 'FAN12G0496' => 'fan', 'FAN13G1027' => 'fan', 'FAN13G2951' => 'fan', 'FAN14G0705' => 'fan', 'FAN14G0720' => 'fan', 'FAN17G0201' => 'fan', 'FAN17G2665' => 'fan', 'FAN18G1456' => 'fan', 'FAN18G1525' => 'fan', 'FAN18G3500' => 'fan', 'FAN28G2670' => 'fan', 'FvH4_1g12391' => 'fve', 'FvH4_4g23220' => 'fve', 'FvH4_5g08810' => 'fve', 'FvH4_5g28960' => 'fve', 'FvH4_6g42820' => 'fve', 'FvH4_6g51110' => 'fve', 'Glyma.02G051802' => 'gma', 'Glyma.04G185300' => 'gma', 'Glyma.05G202900' => 'gma', 'Glyma.08G010300' => 'gma', 'Glyma.16G131900' => 'gma', 'Glyma.17G087900' => 'gma', 'Gohir.A07G048600' => 'ghi', 'Gohir.A11G179000' => 'ghi', 'Gohir.A12G140900' => 'ghi', 'Gohir.A12G140950' => 'ghi', 'Gohir.A12G191700' => 'ghi', 'Gohir.A13G086300' => 'ghi', 'Gohir.D07G052900' => 'ghi', 'Gohir.D11G186600' => 'ghi', 'Gohir.D12G145575' => 'ghi', 'Gohir.D12G145650' => 'ghi', 'Gohir.D12G145725' => 'ghi', 'Gohir.D12G194050' => 'ghi', 'Gohir.D13G091800' => 'ghi', 'Gorai.001G055900' => 'gra', 'Gorai.007G198400' => 'gra', 'Gorai.008G157000' => 'gra', 'Gorai.008G157100' => 'gra', 'Gorai.008G208700' => 'gra', 'Gorai.010G138700' => 'gra', 'GSVIVG01000977001' => 'vvi', 'GSVIVG01007708001' => 'vvi', 'GSVIVG01008587001' => 'vvi', 'GSVIVG01018849001' => 'vvi', 'GSVIVG01032432001' => 'vvi', 'HanXRQChr02g0034131' => 'han', 'HanXRQChr02g0035981' => 'han', 'HanXRQChr02g0035991' => 'han', 'HanXRQChr05g0155611' => 'han', 'HanXRQChr05g0155621' => 'han', 'HanXRQChr08g0236501' => 'han', 'HanXRQChr09g0261321' => 'han', 'HanXRQChr09g0272081' => 'han', 'HanXRQChr10g0310741' => 'han', 'HanXRQChr11g0325591' => 'han', 'HanXRQChr12g0385691' => 'han', 'HanXRQChr13g0387801' => 'han', 'HanXRQChr15g0463011' => 'han', 'Haze_03826' => 'cav', 'Haze_03827' => 'cav', 'Haze_07183' => 'cav', 'Haze_07537' => 'cav', 'Haze_07539' => 'cav', 'Haze_12461' => 'cav', 'Haze_16115' => 'cav', 'Haze_16808' => 'cav', 'Haze_18531' => 'cav', 'Hma1.2p1_0046F.1_g026700' => 'hma', 'Hma1.2p1_0046F.1_g026710' => 'hma', 'Hma1.2p1_0168F.1_g074340' => 'hma', 'Hma1.2p1_0266F.1_g107030' => 'hma', 'Hma1.2p1_0266F.1_g107060' => 'hma', 'Hma1.2p1_0275F.1_g110510' => 'hma', 'Hma1.2p1_0592F.1_g185490' => 'hma', 'Hma1.2p1_0592F.1_g185500' => 'hma', 'Hma1.2p1_0592F.1_g185510' => 'hma', 'Hma1.2p1_0592F.1_g185520' => 'hma', 'Hma1.2p1_0592F.1_g185530' => 'hma', 'Hma1.2p1_0818F.1_g223450' => 'hma', 'HPP92_009708' => 'vpl', 'HPP92_009793' => 'vpl', 'HPP92_009796' => 'vpl', 'HPP92_009797' => 'vpl', 'HPP92_014940' => 'vpl', 'HPP92_014988' => 'vpl', 'Hund02463' => 'sun', 'Hund02760' => 'sun', 'Hund05071' => 'sun', 'Hund10108' => 'sun', 'Hund11204' => 'sun', 'Hund14016' => 'sun', 'Hund16464' => 'sun', 'Lalb_Chr09g0333391' => 'lal', 'Lalb_Chr11g0070461' => 'lal', 'Lalb_Chr12g0201671' => 'lal', 'Lalb_Chr13g0297161' => 'lal', 'Lj1g0002823' => 'lja', 'Lj3C1074T6' => 'lonja', 'Lj4A212T28' => 'lonja', 'Lj4g0005516' => 'lja', 'Lj4g0013705' => 'lja', 'Lj4g0027865' => 'lja', 'Lj5C92G16' => 'lonja', 'Lj5C92T12' => 'lonja', 'Lj7C596T3' => 'lonja', 'Lj9A446G59' => 'lonja', 'Lj9A482G21' => 'lonja', 'Lsat_1_v5_gn_1_28261' => 'lsa', 'Lsat_1_v5_gn_1_28281' => 'lsa', 'Lsat_1_v5_gn_1_32721' => 'lsa', 'Lsat_1_v5_gn_4_151760' => 'lsa', 'Lsat_1_v5_gn_4_2120' => 'lsa', 'Lsat_1_v5_gn_4_75761' => 'lsa', 'Lsat_1_v5_gn_5_10920' => 'lsa', 'Manes.02G099900' => 'mes', 'Manes.11G096200' => 'mes', 'Manes.12G007200' => 'mes', 'Manes.14G048300' => 'mes', 'Manes.17G114700' => 'mes', 'Mapoly0002s0070' => 'mpo', 'Mapoly0029s0099' => 'mpo', 'MBI07_g24742_MAGBIO' => 'mbi', 'MBI10_g27988_MAGBIO' => 'mbi', 'MBI11_g13057_MAGBIO' => 'mbi', 'MD02G1137200' => 'mdo', 'MD06G1137200' => 'mdo', 'MD07G1122300' => 'mdo', 'MD09G1078200' => 'mdo', 'MD13G1123700' => 'mdo', 'MD14G1151900' => 'mdo', 'MD17G1030900' => 'mdo', 'MD17G1068200' => 'mdo', 'MD17G1068600' => 'mdo', 'Medtr3g077540' => 'mtr', 'Medtr4g105530' => 'mtr', 'Medtr8g076580' => 'mtr', 'Medtr8g076590' => 'mtr', 'Medtr8g096410' => 'mtr', 'MELO3C016411.2' => 'cme', 'MELO3C017780.2' => 'cme', 'MELO3C022560.2' => 'cme', 'MELO3C026187.2' => 'cme', 'MELO3C026286.2' => 'cme', 'MELO3C032854.2' => 'cme', 'Migut.H02495' => 'egut', 'Migut.I00561' => 'egut', 'Migut.K01015' => 'egut', 'Migut.K01016' => 'egut', 'Migut.L00743' => 'egut', 'Migut.L00744' => 'egut', 'Migut.L00746' => 'egut', 'Migut.L00798' => 'egut', 'Migut.L00799' => 'egut', 'Migut.N02096' => 'egut', 'MSTRG.11259' => 'ama', 'MSTRG.23142' => 'ama', 'MSTRG.2499' => 'ama', 'Nitab4.5_0000003g0730' => 'nta', 'Nitab4.5_0000137g0020' => 'nta', 'Nitab4.5_0000721g0210' => 'nta', 'Nitab4.5_0000723g0050' => 'nta', 'Nitab4.5_0000913g0070' => 'nta', 'Nitab4.5_0001332g0040' => 'nta', 'Nitab4.5_0001771g0050' => 'nta', 'Nitab4.5_0001918g0050' => 'nta', 'Nitab4.5_0002686g0030' => 'nta', 'Nitab4.5_0003156g0020' => 'nta', 'Nitab4.5_0003383g0040' => 'nta', 'Nitab4.5_0003918g0010' => 'nta', 'Nitab4.5_0006760g0010' => 'nta', 'Nn1g05981' => 'nnu', 'Nn1g06288' => 'nnu', 'Nn3g16371' => 'nnu', 'Nn3g16786' => 'nnu', 'Nn4g22232' => 'nnu', 'Oeu005144.1' => 'oeu', 'Oeu005145.1' => 'oeu', 'Oeu011348.1' => 'oeu', 'Oeu016415.1' => 'oeu', 'Oeu023501.1' => 'oeu', 'Oeu044473.1' => 'oeu', 'Oeu048892.2' => 'oeu', 'Os01g0549200' => 'osa', 'Os02g0469300' => 'osa', 'Os04g0311100' => 'osa', 'Os06g0474900' => 'osa', 'Os10g0181700' => 'osa', 'Os11g0454800' => 'osa', 'Peaxi162Scf00037g00714' => 'pax', 'Peaxi162Scf00084g01217' => 'pax', 'Peaxi162Scf00257g00217' => 'pax', 'Peaxi162Scf00516g00215' => 'pax', 'Peaxi162Scf00689g00123' => 'pax', 'PGR044G2719' => 'pgr', 'PGR083G1360' => 'pgr', 'PGR102G2849' => 'pgr', 'PGR119G2534' => 'pgr', 'PGSC0003DMG400003538' => 'stu', 'PGSC0003DMG400028138' => 'stu', 'PGSC0003DMG400031732' => 'stu', 'PGSC0003DMG400038165' => 'stu', 'Phvul.002G284600' => 'pvu', 'Phvul.003G258200' => 'pvu', 'Phvul.009G176500' => 'pvu', 'Potri.003G167201' => 'ptr', 'Potri.005G118400' => 'ptr', 'Potri.012G089000' => 'ptr', 'Potri.012G102800' => 'ptr', 'Potri.015G079400' => 'ptr', 'Potri.015G100900' => 'ptr', 'Pp3c14_9810' => 'ppa', 'Pp3c15_10450' => 'ppa', 'Pp3c20_19150' => 'ppa', 'Pp3c23_12740' => 'ppa', 'Pp3c23_6310' => 'ppa', 'Pp3c24_3720' => 'ppa', 'Pp3c27_2580' => 'ppa', 'Pp3c9_8990' => 'ppa', 'PRCOL_00002854' => 'pco', 'Prupe.1G221200' => 'ppe', 'Prupe.3G289000' => 'ppe', 'Prupe.5G147000' => 'ppe', 'Prupe.6G157300' => 'ppe', 'Prupe.7G163400' => 'ppe', 'Psat0s2177g0040' => 'psa', 'Psat3g174760' => 'psa', 'Psat3g192160' => 'psa', 'Psat4g058520' => 'psa', 'Psat4g096840' => 'psa', 'Psat7g037320' => 'psa', 'PSO017G1274' => 'pso', 'PSO017G5166' => 'pso', 'PSO063G4558' => 'pso', 'PSO170G4458' => 'pso', 'PSO170G5005' => 'pso', 'PSO210G6156' => 'pso', 'PSO210G6635' => 'pso', 'PSO210G7397' => 'pso', 'PSO210G7700' => 'pso', 'PSO455G0035' => 'pso', 'PSO455G0180' => 'pso', 'PSO478G4515' => 'pso', 'PSO832G1305' => 'pso', 'PSO832G3489' => 'pso', 'QL02p075247' => 'qlo', 'QL03p051148' => 'qlo', 'QL05p010313' => 'qlo', 'QL06p034627' => 'qlo', 'QL10p001889' => 'qlo', 'QL10p010846' => 'qlo', 'RcHm_v2.0_Chr1g0350621' => 'rch', 'RcHm_v2.0_Chr1g0350641' => 'rch', 'RcHm_v2.0_Chr2g0092891' => 'rch', 'RcHm_v2.0_Chr2g0100251' => 'rch', 'RcHm_v2.0_Chr2g0158661' => 'rch', 'RcHm_v2.0_Chr2g0172741' => 'rch', 'RcHm_v2.0_Chr4g0429571' => 'rch', 'RcHm_v2.0_Chr5g0042471' => 'rch', 'RcHm_v2.0_Chr7g0189451' => 'rch', 'Rhsim08G0052000' => 'rsi', 'Rhsim08G0174400' => 'rsi', 'Rhsim08G0193200' => 'rsi', 'Rhsim10G0214800' => 'rsi', 'Rhsim10G0214900' => 'rsi', 'Rhsim10G0215000' => 'rsi', 'Rhsim12G0022900' => 'rsi', 'Rhsim12G0177500' => 'rsi', 'Rhsim12G0177700' => 'rsi', 'Sabra03G0122600' => 'sbr', 'Sabra05G0097400' => 'sbr', 'Sabra12G0064100' => 'sbr', 'Sabra15G0121300' => 'sbr', 'SalBow2G0642' => 'sbo', 'SalBow5G2667' => 'sbo', 'SalBow5G4873' => 'sbo', 'SalBow8G2395' => 'sbo', 'Sc03g0003290' => 'sci', 'Sc10g0010130' => 'sci', 'Sc22g0003650' => 'sci', 'Sed0001603' => 'sed', 'Sed0004259' => 'sed', 'Sed0006789' => 'sed', 'Sed0011838' => 'sed', 'Sed0012964' => 'sed', 'Sed0016383' => 'sed', 'Sed0019010' => 'sed', 'Sed0020188' => 'sed', 'SEGI_04702' => 'sgi', 'SEGI_17231' => 'sgi', 'SEGI_18877' => 'sgi', 'SEGI_25196' => 'sgi', 'SEGI_25515' => 'sgi', 'SEGI_28445' => 'sgi', 'SEGI_37452' => 'sgi', 'SGA_v2.0_scaffold188G40336' => 'sas', 'SGA_v2.0_scaffold228G43247' => 'sas', 'SGA_v2.0_scaffold280G46853' => 'sas', 'SGA_v2.0_scaffold34G13808' => 'sas', 'SGA_v2.0_scaffold40G15576' => 'sas', 'SGA_v2.0_scaffold611G53188' => 'sas', 'SGA_v2.0_scaffold78G25461' => 'sas', 'SGA_v2.0_scaffold90G27888' => 'sas', 'SHI08601' => 'shi', 'SHI08606' => 'shi', 'SHI17117' => 'shi', 'SHI17119' => 'shi', 'SMO118G0201' => 'smo', 'SMO169G0247' => 'smo', 'SMO176G0006' => 'smo', 'SMO176G0015' => 'smo', 'SMO202G0006' => 'smo', 'SMO240G0050' => 'smo', 'SMO286G0009' => 'smo', 'SMO338G0033' => 'smo', 'SMO356G0533' => 'smo', 'SMO364G0382' => 'smo', 'SMO367G0166' => 'smo', 'SMO367G1098' => 'smo', 'Solyc01g009920.3' => 'sly', 'Solyc01g099300.3' => 'sly', 'Solyc02g084700.3' => 'sly', 'Solyc03g097520.3' => 'sly', 'Solyc06g071580.3' => 'sly', 'Solyc10g081760.3' => 'sly', 'Sopen01g005480' => 'spe', 'Sopen01g042850' => 'spe', 'Sopen02g029370' => 'spe', 'Sopen03g028280' => 'spe', 'Sopen06g027870' => 'spe', 'Sopen10g032270' => 'spe', 'Sp5g18180' => 'spa', 'Sp6g12880' => 'spa', 'Sp6g30850' => 'spa', 'Sp7g22960' => 'spa', 'Sp7g34010' => 'spa', 'SpUn1326_0010' => 'spa', 'TAR371G0242' => 'tar', 'TAR622G0638' => 'tar', 'TAR628G1548' => 'tar', 'TAR629G1079' => 'tar', 'TAR629G3413' => 'tar', 'THA.LOC104804249' => 'tha', 'THA.LOC104808315' => 'tha', 'THA.LOC104809238' => 'tha', 'THA.LOC104825484' => 'tha', 'Thecc.01G025500' => 'tca', 'Thecc.03G015800' => 'tca', 'Thecc.03G018000' => 'tca', 'Thecc.03G134800' => 'tca', 'Thecc.04G014700' => 'tca', 'Thhalv10006991m.g' => 'esa', 'Thhalv10012707m.g' => 'esa', 'Thhalv10015739m.g' => 'esa', 'Thhalv10024553m.g' => 'esa', 'Thhalv10024673m.g' => 'esa', 'Thhalv10029187m.g' => 'esa', 'TPR.G12971' => 'tpr', 'TPR.G29396' => 'tpr', 'TPR.G33376' => 'tpr', 'TPR.G35508' => 'tpr', 'TPR.G35516' => 'tpr', 'TPR.G37317' => 'tpr', 'TPR.G37389' => 'tpr', 'TPR.G37523' => 'tpr', 'TPR.G559' => 'tpr', 'TWI14G0070' => 'twi', 'TWI14G0729' => 'twi', 'TWI18G0596' => 'twi', 'TWI39G0780' => 'twi', 'TWI39G0850' => 'twi', 'TWI73G1052' => 'twi', 'unitig_52.g17485' => 'ugi', 'unitig_61.g26355' => 'ugi', 'vmacro01040' => 'vma', 'vmacro16731' => 'vma', 'vmacro18270' => 'vma', 'vmacro19142' => 'vma', 'vmacro19407' => 'vma', 'vmacro19408' => 'vma', 'vmacro21899' => 'vma', 'vmacro21900' => 'vma', 'vmacro21901' => 'vma', 'VMungo0251G0490' => 'vmu', 'VMungo0251G1748' => 'vmu', 'VMungo1309G0421' => 'vmu', 'Zm00001eb086500' => 'zma', 'Zm00001eb150680' => 'zma', 'Zm00001eb162330' => 'zma', 'Zm00001eb203130' => 'zma', 'Zm00001eb369480' => 'zma', 'Zm00001eb382340' => 'zma', 'Zm00001eb416360' => 'zma' ), 'gf_id' => 'HOM05D000902', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000902' ), 'data_identifier' => 'HOM05D000902', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000902', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '663', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02470' => 'bna', 'A01p16260' => 'bna', 'A02p01680' => 'bna', 'A03p16600' => 'bna', 'A03p55660' => 'bna', 'A03p64160' => 'bna', 'A03p64170' => 'bna', 'A08p31900' => 'bna', 'A09p59530' => 'bna', 'A10p08230' => 'bna', 'A10p25090' => 'bna', 'Aa31LG3G7100' => 'aar', 'Aa31LG3G7110' => 'aar', 'Aa31LG6G13160' => 'aar', 'Aa31LG7G10770' => 'aar', 'Aa31LG7G3830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2723' => 'aag', 'Actinidia08045' => 'ach', 'Actinidia08888' => 'ach', 'Actinidia18333' => 'ach', 'Actinidia19334' => 'ach', 'Actinidia25552' => 'ach', 'Actinidia26089' => 'ach', 'Actinidia30615' => 'ach', 'Actinidia30616' => 'ach', 'Actinidia33083' => 'ach', 'Actinidia35762' => 'ach', 'Ah.02g110620' => 'amhyb', 'Ah.11g046390' => 'amhyb', 'AL1G31670' => 'aly', 'AL6G23730' => 'aly', 'AL7G14740' => 'aly', 'AL7G14750' => 'aly', 'AL7G14760' => 'aly', 'AL7G28220' => 'aly', 'AL8G24940' => 'aly', 'Aqoxy3G01665' => 'aox', 'Aqoxy3G02853' => 'aox', 'Aqoxy5G01513' => 'aox', 'Aqoxy5G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8SKA4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ75LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKDA6G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0LJZ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7REX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZP4YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWX7I5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2QKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS0L9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPCD8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q161UF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UC7XCF' => 'arhy', 'AT1G19100' => 'ath', 'AT4G24970' => 'ath', 'AT4G36270' => 'ath', 'AT4G36280' => 'ath', 'AT4G36290' => 'ath', 'AT5G13130' => 'ath', 'AT5G50780' => 'ath', 'ATR0582G266' => 'atr', 'ATR0661G195' => 'atr', 'ATR1152G031' => 'atr', 'Atru.chr11.2382' => 'acertr', 'Atru.chr12.2337' => 'acertr', 'Atru.chr3.744' => 'acertr', 'Atru.chr6.1870' => 'acertr', 'Atru.chr9.2515' => 'acertr', 'AUR62004120' => 'cqu', 'AUR62005667' => 'cqu', 'AUR62007634' => 'cqu', 'AUR62008186' => 'cqu', 'AUR62008187' => 'cqu', 'AUR62008188' => 'cqu', 'AUR62027954' => 'cqu', 'AUR62028766' => 'cqu', 'AUR62028767' => 'cqu', 'AUR62028768' => 'cqu', 'AUR62028886' => 'cqu', 'AUR62029563' => 'cqu', 'AUR62038832' => 'cqu', 'BcaB01g04149' => 'bca', 'BcaB03g12940' => 'bca', 'BcaB03g13090' => 'bca', 'BcaB03g14466' => 'bca', 'BcaB05g24035' => 'bca', 'BcaC01g06050' => 'bca', 'BcaC04g19148' => 'bca', 'BcaC04g20761' => 'bca', 'BcaC06g32845' => 'bca', 'BcaC07g41274' => 'bca', 'BcaC09g50827' => 'bca', 'BcaNung00741' => 'bca', 'BcaNung00742' => 'bca', 'BcaNung01859' => 'bca', 'BcaNung03985' => 'bca', 'BcaNung03989' => 'bca', 'BcaNung05661' => 'bca', 'BolC1t00257H' => 'bol', 'BolC1t01956H' => 'bol', 'BolC2t06534H' => 'bol', 'BolC3t14334H' => 'bol', 'BolC5t30451H' => 'bol', 'BolC7t45880H' => 'bol', 'BolC7t46586H' => 'bol', 'BolC8t49301H' => 'bol', 'BolC8t51837H' => 'bol', 'BolC9t56822H' => 'bol', 'BolC9t59235H' => 'bol', 'BraA01t00234Z' => 'bra', 'BraA01t01563Z' => 'bra', 'BraA02t05147Z' => 'bra', 'BraA03t10947Z' => 'bra', 'BraA03t14633Z' => 'bra', 'BraA08t35112Z' => 'bra', 'BraA09t41330Z' => 'bra', 'BraA10t44570Z' => 'bra', 'C01p02670' => 'bna', 'C01p20260' => 'bna', 'C02p05890' => 'bna', 'C03p19530' => 'bna', 'C05p17470' => 'bna', 'C07p53900' => 'bna', 'C07p61630' => 'bna', 'C08p16800' => 'bna', 'C08p42810' => 'bna', 'C09p39480' => 'bna', 'C09p63980' => 'bna', 'CAN.G1001.7' => 'can', 'CAN.G1034.55' => 'can', 'CAN.G143.7' => 'can', 'CAN.G3340.1' => 'can', 'CAN.G358.19' => 'can', 'CAN.G373.2' => 'can', 'CAN.G674.16' => 'can', 'CAN.G674.17' => 'can', 'CAN.G674.18' => 'can', 'CAN.G732.2' => 'can', 'CAN.G732.3' => 'can', 'CAN.G993.39' => 'can', 'CANSAT01G2052' => 'cansat', 'CANSAT80G0070' => 'cansat', 'CANSAT80G0483' => 'cansat', 'CANSAT80G0625' => 'cansat', 'CARHR019690' => 'chi', 'CARHR080280' => 'chi', 'CARHR152750' => 'chi', 'CARHR152760' => 'chi', 'CARHR152770' => 'chi', 'CARHR200340' => 'chi', 'CARHR232370' => 'chi', 'CARHR244670' => 'chi', 'CARHR244680' => 'chi', 'CARHR257520' => 'chi', 'Carub.0001s1872' => 'cru', 'Carub.0006s1130' => 'cru', 'Carub.0007s0396' => 'cru', 'Carub.0007s0397' => 'cru', 'Carub.0007s1608' => 'cru', 'Carub.0008s1068' => 'cru', 'Carub.0008s1077' => 'cru', 'Ca_16158_v3' => 'car', 'Ca_17571_v3' => 'car', 'Ca_21936_v3' => 'car', 'Ca_22350_v3' => 'car', 'CBR_g22445' => 'cbr', 'CBR_g26290' => 'cbr', 'Cc04_g09610' => 'ccan', 'Cc04_g12280' => 'ccan', 'Cc07_g10230' => 'ccan', 'CDE02G0093' => 'cde', 'CDE02G0701' => 'cde', 'CDE04G1050' => 'cde', 'CDE05G1833' => 'cde', 'CDE05G3058' => 'cde', 'CDE05G3380' => 'cde', 'CDE06G0536' => 'cde', 'Cfa006923' => 'cfa', 'Cfa009402' => 'cfa', 'Cfa018751' => 'cfa', 'Cfa019164' => 'cfa', 'Cfa022935' => 'cfa', 'Ciclev10019081m.g' => 'ccl', 'Ciclev10025076m.g' => 'ccl', 'Ciclev10030712m.g' => 'ccl', 'Ciclev10033760m.g' => 'ccl', 'CiPaw.05G105600' => 'cil', 'CiPaw.08G136700' => 'cil', 'CiPaw.11G003900' => 'cil', 'CiPaw.11G023700' => 'cil', 'CiPaw.12G003700' => 'cil', 'ClCG06G017100' => 'cla', 'ClCG06G018110' => 'cla', 'ClCG07G008800' => 'cla', 'ClCG07G015330' => 'cla', 'COL.COLO4_13698' => 'col', 'COL.COLO4_16659' => 'col', 'COL.COLO4_21986' => 'col', 'COL.COLO4_24049' => 'col', 'COL.COLO4_29061' => 'col', 'COL.COLO4_29075' => 'col', 'COL.COLO4_30094' => 'col', 'Cpa.g.c33689' => 'cpa', 'Cpa.g.sc108.39' => 'cpa', 'Cpa.g.sc108.41' => 'cpa', 'Cpa.g.sc1163.1' => 'cpa', 'Cpa.g.sc4.155' => 'cpa', 'Cpa.g.sc6.194' => 'cpa', 'CsaV3_1G000340' => 'csa', 'CsaV3_1G001400' => 'csa', 'CsaV3_4G002220' => 'csa', 'CsaV3_4G005370' => 'csa', 'CSS0007487' => 'camsi', 'CSS0008066' => 'camsi', 'CSS0009120' => 'camsi', 'CSS0015512' => 'camsi', 'CSS0022409' => 'camsi', 'CSS0025358' => 'camsi', 'CSS0044547' => 'camsi', 'DCAR_013057' => 'dca', 'DCAR_015058' => 'dca', 'DCAR_016027' => 'dca', 'DCAR_017327' => 'dca', 'DCAR_020743' => 'dca', 'DCAR_026157' => 'dca', 'DCAR_032339' => 'dca', 'DCAR_032340' => 'dca', 'Dinv11200' => 'din', 'Dinv11201' => 'din', 'Dinv20631' => 'din', 'Dinv23182' => 'din', 'Dinv33466' => 'din', 'Dinv33583' => 'din', 'Dinv38565' => 'din', 'Duzib068G0200' => 'dzi', 'Duzib147G0132' => 'dzi', 'Duzib147G0635' => 'dzi', 'Duzib205G1670' => 'dzi', 'Duzib251G0606' => 'dzi', 'ECA232G3336' => 'eca', 'ECA232G3763' => 'eca', 'ECA232G4845' => 'eca', 'ECA234G1607' => 'eca', 'ECA246G0932' => 'eca', 'ECA247G0781' => 'eca', 'ECA247G1932' => 'eca', 'ECA247G2079' => 'eca', 'ECA247G3338' => 'eca', 'ECA247G4115' => 'eca', 'EL10Ac3g06552' => 'bvu', 'EL10Ac5g10721' => 'bvu', 'EL10Ac5g10722' => 'bvu', 'EL10Ac5g10723' => 'bvu', 'EL10Ac5g11361' => 'bvu', 'EL10Ac6g13553' => 'bvu', 'EL10As8g23872' => 'bvu', 'Eucgr.B00250' => 'egr', 'Eucgr.B00251' => 'egr', 'Eucgr.B03533' => 'egr', 'Eucgr.I02381' => 'egr', 'Eucgr.K02700' => 'egr', 'FAN02G0174' => 'fan', 'FAN02G3146' => 'fan', 'FAN04G1672' => 'fan', 'FAN04G2273' => 'fan', 'FAN05G2791' => 'fan', 'FAN05G4035' => 'fan', 'FAN07G0834' => 'fan', 'FAN08G1198' => 'fan', 'FAN09G4182' => 'fan', 'FAN12G0496' => 'fan', 'FAN13G1027' => 'fan', 'FAN13G2951' => 'fan', 'FAN14G0705' => 'fan', 'FAN14G0720' => 'fan', 'FAN17G0201' => 'fan', 'FAN17G2665' => 'fan', 'FAN18G1456' => 'fan', 'FAN18G1525' => 'fan', 'FAN18G3500' => 'fan', 'FAN28G2670' => 'fan', 'FvH4_1g12391' => 'fve', 'FvH4_4g23220' => 'fve', 'FvH4_5g08810' => 'fve', 'FvH4_5g28960' => 'fve', 'FvH4_6g42820' => 'fve', 'FvH4_6g51110' => 'fve', 'Glyma.02G051802' => 'gma', 'Glyma.04G185300' => 'gma', 'Glyma.05G202900' => 'gma', 'Glyma.08G010300' => 'gma', 'Glyma.16G131900' => 'gma', 'Glyma.17G087900' => 'gma', 'Gohir.A07G048600' => 'ghi', 'Gohir.A11G179000' => 'ghi', 'Gohir.A12G140900' => 'ghi', 'Gohir.A12G140950' => 'ghi', 'Gohir.A12G191700' => 'ghi', 'Gohir.A13G086300' => 'ghi', 'Gohir.D07G052900' => 'ghi', 'Gohir.D11G186600' => 'ghi', 'Gohir.D12G145575' => 'ghi', 'Gohir.D12G145650' => 'ghi', 'Gohir.D12G145725' => 'ghi', 'Gohir.D12G194050' => 'ghi', 'Gohir.D13G091800' => 'ghi', 'Gorai.001G055900' => 'gra', 'Gorai.007G198400' => 'gra', 'Gorai.008G157000' => 'gra', 'Gorai.008G157100' => 'gra', 'Gorai.008G208700' => 'gra', 'Gorai.010G138700' => 'gra', 'GSVIVG01000977001' => 'vvi', 'GSVIVG01007708001' => 'vvi', 'GSVIVG01008587001' => 'vvi', 'GSVIVG01018849001' => 'vvi', 'GSVIVG01032432001' => 'vvi', 'HanXRQChr02g0034131' => 'han', 'HanXRQChr02g0035981' => 'han', 'HanXRQChr02g0035991' => 'han', 'HanXRQChr05g0155611' => 'han', 'HanXRQChr05g0155621' => 'han', 'HanXRQChr08g0236501' => 'han', 'HanXRQChr09g0261321' => 'han', 'HanXRQChr09g0272081' => 'han', 'HanXRQChr10g0310741' => 'han', 'HanXRQChr11g0325591' => 'han', 'HanXRQChr12g0385691' => 'han', 'HanXRQChr13g0387801' => 'han', 'HanXRQChr15g0463011' => 'han', 'Haze_03826' => 'cav', 'Haze_03827' => 'cav', 'Haze_07183' => 'cav', 'Haze_07537' => 'cav', 'Haze_07539' => 'cav', 'Haze_12461' => 'cav', 'Haze_16115' => 'cav', 'Haze_16808' => 'cav', 'Haze_18531' => 'cav', 'Hma1.2p1_0046F.1_g026700' => 'hma', 'Hma1.2p1_0046F.1_g026710' => 'hma', 'Hma1.2p1_0168F.1_g074340' => 'hma', 'Hma1.2p1_0266F.1_g107030' => 'hma', 'Hma1.2p1_0266F.1_g107060' => 'hma', 'Hma1.2p1_0275F.1_g110510' => 'hma', 'Hma1.2p1_0592F.1_g185490' => 'hma', 'Hma1.2p1_0592F.1_g185500' => 'hma', 'Hma1.2p1_0592F.1_g185510' => 'hma', 'Hma1.2p1_0592F.1_g185520' => 'hma', 'Hma1.2p1_0592F.1_g185530' => 'hma', 'Hma1.2p1_0818F.1_g223450' => 'hma', 'HPP92_009708' => 'vpl', 'HPP92_009793' => 'vpl', 'HPP92_009796' => 'vpl', 'HPP92_009797' => 'vpl', 'HPP92_014940' => 'vpl', 'HPP92_014988' => 'vpl', 'Hund02463' => 'sun', 'Hund02760' => 'sun', 'Hund05071' => 'sun', 'Hund10108' => 'sun', 'Hund11204' => 'sun', 'Hund14016' => 'sun', 'Hund16464' => 'sun', 'Lalb_Chr09g0333391' => 'lal', 'Lalb_Chr11g0070461' => 'lal', 'Lalb_Chr12g0201671' => 'lal', 'Lalb_Chr13g0297161' => 'lal', 'Lj1g0002823' => 'lja', 'Lj3C1074T6' => 'lonja', 'Lj4A212T28' => 'lonja', 'Lj4g0005516' => 'lja', 'Lj4g0013705' => 'lja', 'Lj4g0027865' => 'lja', 'Lj5C92G16' => 'lonja', 'Lj5C92T12' => 'lonja', 'Lj7C596T3' => 'lonja', 'Lj9A446G59' => 'lonja', 'Lj9A482G21' => 'lonja', 'Lsat_1_v5_gn_1_28261' => 'lsa', 'Lsat_1_v5_gn_1_28281' => 'lsa', 'Lsat_1_v5_gn_1_32721' => 'lsa', 'Lsat_1_v5_gn_4_151760' => 'lsa', 'Lsat_1_v5_gn_4_2120' => 'lsa', 'Lsat_1_v5_gn_4_75761' => 'lsa', 'Lsat_1_v5_gn_5_10920' => 'lsa', 'Manes.02G099900' => 'mes', 'Manes.11G096200' => 'mes', 'Manes.12G007200' => 'mes', 'Manes.14G048300' => 'mes', 'Manes.17G114700' => 'mes', 'Mapoly0002s0070' => 'mpo', 'Mapoly0029s0099' => 'mpo', 'MBI07_g24742_MAGBIO' => 'mbi', 'MBI10_g27988_MAGBIO' => 'mbi', 'MBI11_g13057_MAGBIO' => 'mbi', 'MD02G1137200' => 'mdo', 'MD06G1137200' => 'mdo', 'MD07G1122300' => 'mdo', 'MD09G1078200' => 'mdo', 'MD13G1123700' => 'mdo', 'MD14G1151900' => 'mdo', 'MD17G1030900' => 'mdo', 'MD17G1068200' => 'mdo', 'MD17G1068600' => 'mdo', 'Medtr3g077540' => 'mtr', 'Medtr4g105530' => 'mtr', 'Medtr8g076580' => 'mtr', 'Medtr8g076590' => 'mtr', 'Medtr8g096410' => 'mtr', 'MELO3C016411.2' => 'cme', 'MELO3C017780.2' => 'cme', 'MELO3C022560.2' => 'cme', 'MELO3C026187.2' => 'cme', 'MELO3C026286.2' => 'cme', 'MELO3C032854.2' => 'cme', 'Migut.H02495' => 'egut', 'Migut.I00561' => 'egut', 'Migut.K01015' => 'egut', 'Migut.K01016' => 'egut', 'Migut.L00743' => 'egut', 'Migut.L00744' => 'egut', 'Migut.L00746' => 'egut', 'Migut.L00798' => 'egut', 'Migut.L00799' => 'egut', 'Migut.N02096' => 'egut', 'MSTRG.11259' => 'ama', 'MSTRG.23142' => 'ama', 'MSTRG.2499' => 'ama', 'Nitab4.5_0000003g0730' => 'nta', 'Nitab4.5_0000137g0020' => 'nta', 'Nitab4.5_0000721g0210' => 'nta', 'Nitab4.5_0000723g0050' => 'nta', 'Nitab4.5_0000913g0070' => 'nta', 'Nitab4.5_0001332g0040' => 'nta', 'Nitab4.5_0001771g0050' => 'nta', 'Nitab4.5_0001918g0050' => 'nta', 'Nitab4.5_0002686g0030' => 'nta', 'Nitab4.5_0003156g0020' => 'nta', 'Nitab4.5_0003383g0040' => 'nta', 'Nitab4.5_0003918g0010' => 'nta', 'Nitab4.5_0006760g0010' => 'nta', 'Nn1g05981' => 'nnu', 'Nn1g06288' => 'nnu', 'Nn3g16371' => 'nnu', 'Nn3g16786' => 'nnu', 'Nn4g22232' => 'nnu', 'Oeu005144.1' => 'oeu', 'Oeu005145.1' => 'oeu', 'Oeu011348.1' => 'oeu', 'Oeu016415.1' => 'oeu', 'Oeu023501.1' => 'oeu', 'Oeu044473.1' => 'oeu', 'Oeu048892.2' => 'oeu', 'Os01g0549200' => 'osa', 'Os02g0469300' => 'osa', 'Os04g0311100' => 'osa', 'Os06g0474900' => 'osa', 'Os10g0181700' => 'osa', 'Os11g0454800' => 'osa', 'Peaxi162Scf00037g00714' => 'pax', 'Peaxi162Scf00084g01217' => 'pax', 'Peaxi162Scf00257g00217' => 'pax', 'Peaxi162Scf00516g00215' => 'pax', 'Peaxi162Scf00689g00123' => 'pax', 'PGR044G2719' => 'pgr', 'PGR083G1360' => 'pgr', 'PGR102G2849' => 'pgr', 'PGR119G2534' => 'pgr', 'PGSC0003DMG400003538' => 'stu', 'PGSC0003DMG400028138' => 'stu', 'PGSC0003DMG400031732' => 'stu', 'PGSC0003DMG400038165' => 'stu', 'Phvul.002G284600' => 'pvu', 'Phvul.003G258200' => 'pvu', 'Phvul.009G176500' => 'pvu', 'Potri.003G167201' => 'ptr', 'Potri.005G118400' => 'ptr', 'Potri.012G089000' => 'ptr', 'Potri.012G102800' => 'ptr', 'Potri.015G079400' => 'ptr', 'Potri.015G100900' => 'ptr', 'Pp3c14_9810' => 'ppa', 'Pp3c15_10450' => 'ppa', 'Pp3c20_19150' => 'ppa', 'Pp3c23_12740' => 'ppa', 'Pp3c23_6310' => 'ppa', 'Pp3c24_3720' => 'ppa', 'Pp3c27_2580' => 'ppa', 'Pp3c9_8990' => 'ppa', 'PRCOL_00002854' => 'pco', 'Prupe.1G221200' => 'ppe', 'Prupe.3G289000' => 'ppe', 'Prupe.5G147000' => 'ppe', 'Prupe.6G157300' => 'ppe', 'Prupe.7G163400' => 'ppe', 'Psat0s2177g0040' => 'psa', 'Psat3g174760' => 'psa', 'Psat3g192160' => 'psa', 'Psat4g058520' => 'psa', 'Psat4g096840' => 'psa', 'Psat7g037320' => 'psa', 'PSO017G1274' => 'pso', 'PSO017G5166' => 'pso', 'PSO063G4558' => 'pso', 'PSO170G4458' => 'pso', 'PSO170G5005' => 'pso', 'PSO210G6156' => 'pso', 'PSO210G6635' => 'pso', 'PSO210G7397' => 'pso', 'PSO210G7700' => 'pso', 'PSO455G0035' => 'pso', 'PSO455G0180' => 'pso', 'PSO478G4515' => 'pso', 'PSO832G1305' => 'pso', 'PSO832G3489' => 'pso', 'QL02p075247' => 'qlo', 'QL03p051148' => 'qlo', 'QL05p010313' => 'qlo', 'QL06p034627' => 'qlo', 'QL10p001889' => 'qlo', 'QL10p010846' => 'qlo', 'RcHm_v2.0_Chr1g0350621' => 'rch', 'RcHm_v2.0_Chr1g0350641' => 'rch', 'RcHm_v2.0_Chr2g0092891' => 'rch', 'RcHm_v2.0_Chr2g0100251' => 'rch', 'RcHm_v2.0_Chr2g0158661' => 'rch', 'RcHm_v2.0_Chr2g0172741' => 'rch', 'RcHm_v2.0_Chr4g0429571' => 'rch', 'RcHm_v2.0_Chr5g0042471' => 'rch', 'RcHm_v2.0_Chr7g0189451' => 'rch', 'Rhsim08G0052000' => 'rsi', 'Rhsim08G0174400' => 'rsi', 'Rhsim08G0193200' => 'rsi', 'Rhsim10G0214800' => 'rsi', 'Rhsim10G0214900' => 'rsi', 'Rhsim10G0215000' => 'rsi', 'Rhsim12G0022900' => 'rsi', 'Rhsim12G0177500' => 'rsi', 'Rhsim12G0177700' => 'rsi', 'Sabra03G0122600' => 'sbr', 'Sabra05G0097400' => 'sbr', 'Sabra12G0064100' => 'sbr', 'Sabra15G0121300' => 'sbr', 'SalBow2G0642' => 'sbo', 'SalBow5G2667' => 'sbo', 'SalBow5G4873' => 'sbo', 'SalBow8G2395' => 'sbo', 'Sc03g0003290' => 'sci', 'Sc10g0010130' => 'sci', 'Sc22g0003650' => 'sci', 'Sed0001603' => 'sed', 'Sed0004259' => 'sed', 'Sed0006789' => 'sed', 'Sed0011838' => 'sed', 'Sed0012964' => 'sed', 'Sed0016383' => 'sed', 'Sed0019010' => 'sed', 'Sed0020188' => 'sed', 'SEGI_04702' => 'sgi', 'SEGI_17231' => 'sgi', 'SEGI_18877' => 'sgi', 'SEGI_25196' => 'sgi', 'SEGI_25515' => 'sgi', 'SEGI_28445' => 'sgi', 'SEGI_37452' => 'sgi', 'SGA_v2.0_scaffold188G40336' => 'sas', 'SGA_v2.0_scaffold228G43247' => 'sas', 'SGA_v2.0_scaffold280G46853' => 'sas', 'SGA_v2.0_scaffold34G13808' => 'sas', 'SGA_v2.0_scaffold40G15576' => 'sas', 'SGA_v2.0_scaffold611G53188' => 'sas', 'SGA_v2.0_scaffold78G25461' => 'sas', 'SGA_v2.0_scaffold90G27888' => 'sas', 'SHI08601' => 'shi', 'SHI08606' => 'shi', 'SHI17117' => 'shi', 'SHI17119' => 'shi', 'SMO118G0201' => 'smo', 'SMO169G0247' => 'smo', 'SMO176G0006' => 'smo', 'SMO176G0015' => 'smo', 'SMO202G0006' => 'smo', 'SMO240G0050' => 'smo', 'SMO286G0009' => 'smo', 'SMO338G0033' => 'smo', 'SMO356G0533' => 'smo', 'SMO364G0382' => 'smo', 'SMO367G0166' => 'smo', 'SMO367G1098' => 'smo', 'Solyc01g009920.3' => 'sly', 'Solyc01g099300.3' => 'sly', 'Solyc02g084700.3' => 'sly', 'Solyc03g097520.3' => 'sly', 'Solyc06g071580.3' => 'sly', 'Solyc10g081760.3' => 'sly', 'Sopen01g005480' => 'spe', 'Sopen01g042850' => 'spe', 'Sopen02g029370' => 'spe', 'Sopen03g028280' => 'spe', 'Sopen06g027870' => 'spe', 'Sopen10g032270' => 'spe', 'Sp5g18180' => 'spa', 'Sp6g12880' => 'spa', 'Sp6g30850' => 'spa', 'Sp7g22960' => 'spa', 'Sp7g34010' => 'spa', 'SpUn1326_0010' => 'spa', 'TAR371G0242' => 'tar', 'TAR622G0638' => 'tar', 'TAR628G1548' => 'tar', 'TAR629G1079' => 'tar', 'TAR629G3413' => 'tar', 'THA.LOC104804249' => 'tha', 'THA.LOC104808315' => 'tha', 'THA.LOC104809238' => 'tha', 'THA.LOC104825484' => 'tha', 'Thecc.01G025500' => 'tca', 'Thecc.03G015800' => 'tca', 'Thecc.03G018000' => 'tca', 'Thecc.03G134800' => 'tca', 'Thecc.04G014700' => 'tca', 'Thhalv10006991m.g' => 'esa', 'Thhalv10012707m.g' => 'esa', 'Thhalv10015739m.g' => 'esa', 'Thhalv10024553m.g' => 'esa', 'Thhalv10024673m.g' => 'esa', 'Thhalv10029187m.g' => 'esa', 'TPR.G12971' => 'tpr', 'TPR.G29396' => 'tpr', 'TPR.G33376' => 'tpr', 'TPR.G35508' => 'tpr', 'TPR.G35516' => 'tpr', 'TPR.G37317' => 'tpr', 'TPR.G37389' => 'tpr', 'TPR.G37523' => 'tpr', 'TPR.G559' => 'tpr', 'TWI14G0070' => 'twi', 'TWI14G0729' => 'twi', 'TWI18G0596' => 'twi', 'TWI39G0780' => 'twi', 'TWI39G0850' => 'twi', 'TWI73G1052' => 'twi', 'unitig_52.g17485' => 'ugi', 'unitig_61.g26355' => 'ugi', 'vmacro01040' => 'vma', 'vmacro16731' => 'vma', 'vmacro18270' => 'vma', 'vmacro19142' => 'vma', 'vmacro19407' => 'vma', 'vmacro19408' => 'vma', 'vmacro21899' => 'vma', 'vmacro21900' => 'vma', 'vmacro21901' => 'vma', 'VMungo0251G0490' => 'vmu', 'VMungo0251G1748' => 'vmu', 'VMungo1309G0421' => 'vmu', 'Zm00001eb086500' => 'zma', 'Zm00001eb150680' => 'zma', 'Zm00001eb162330' => 'zma', 'Zm00001eb203130' => 'zma', 'Zm00001eb369480' => 'zma', 'Zm00001eb382340' => 'zma', 'Zm00001eb416360' => 'zma' ) $gf_id = 'HOM05D000902' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000902' ) $data_identifier = 'HOM05D000902' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 13, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 10, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 6, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 9, 'hma' => (int) 12, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 4, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 10, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 6, 'ppa' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 6, 'rch' => (int) 9, 'rsi' => (int) 9, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 12, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 3, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416360' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1